BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780272|ref|YP_003064685.1| ATP-dependent Clp protease
proteolytic subunit [Candidatus Liberibacter asiaticus str. psy62]
         (216 letters)

Database: nr 
           13,984,884 sequences; 4,792,584,752 total letters

Searching..................................................done


Results from round 1


>gi|254780272|ref|YP_003064685.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254039949|gb|ACT56745.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 216

 Score =  450 bits (1157), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 216/216 (100%), Positives = 216/216 (100%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC
Sbjct: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS
Sbjct: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV
Sbjct: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           EKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK
Sbjct: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216


>gi|315122830|ref|YP_004063319.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313496232|gb|ADR52831.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 216

 Score =  377 bits (969), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/216 (82%), Positives = 196/216 (90%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           M FE  A++   D  LGLVPMVVEQTNRGERSYDIYSRLLKERIVF+TGQIEDHMA LIC
Sbjct: 1   MIFEEYAREGFNDTSLGLVPMVVEQTNRGERSYDIYSRLLKERIVFITGQIEDHMAALIC 60

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP+ST C+GQAASMGSLLL+
Sbjct: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPVSTLCIGQAASMGSLLLA 120

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG+KGMRFALPNARI+LHQPSGGFSGQASDIERHA+DI+KIK RLN IYVK+CG+ YEEV
Sbjct: 121 AGKKGMRFALPNARIMLHQPSGGFSGQASDIERHARDIIKIKHRLNNIYVKHCGRVYEEV 180

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           E+TLDRD  MSA +A  WG++DKVLMSR+DIEE  K
Sbjct: 181 EQTLDRDCFMSAEDAHAWGLIDKVLMSRVDIEEGGK 216


>gi|222085564|ref|YP_002544094.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Agrobacterium
           radiobacter K84]
 gi|221723012|gb|ACM26168.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Agrobacterium
           radiobacter K84]
          Length = 210

 Score =  357 bits (915), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 162/204 (79%), Positives = 188/204 (92%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           ++  D  + LVPMVVEQTNRGERSYDIYSRLLKERI+F+TG +EDHMATL+CAQLLFLEA
Sbjct: 2   RNPVDTAMALVPMVVEQTNRGERSYDIYSRLLKERIIFLTGPVEDHMATLVCAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI+LYINSPGGVVTAGMAIYDTMQFIKP IST C+GQAASMGSLLL+AG+K MRF
Sbjct: 62  ENPKKEIALYINSPGGVVTAGMAIYDTMQFIKPAISTLCIGQAASMGSLLLAAGDKDMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           A PN+RI++HQPSGGF GQASDIERHA+DI+K+KRRLNEIYVK+CG+TYEEVE+TLDRDH
Sbjct: 122 ATPNSRIMVHQPSGGFQGQASDIERHARDIIKMKRRLNEIYVKHCGRTYEEVEQTLDRDH 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIE 212
            MS+ EA DWG++DKVL SR ++E
Sbjct: 182 FMSSDEAKDWGLIDKVLTSRTEME 205


>gi|241204073|ref|YP_002975169.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240857963|gb|ACS55630.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 209

 Score =  353 bits (906), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 160/204 (78%), Positives = 185/204 (90%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           ++  D  + LVPMVVEQTNRGERSYDIYSRLLKERI+F+TG +EDHMATL+CAQLLFLEA
Sbjct: 2   RNPVDTAMALVPMVVEQTNRGERSYDIYSRLLKERIIFLTGTVEDHMATLVCAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI+LYINSPGGVVTAGMAIYDTMQFIKP +ST C+GQAASMGSLLL+AG K MRF
Sbjct: 62  ENPKKEIALYINSPGGVVTAGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLAAGHKDMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           A PN+RI++HQPSGGF GQASDIERHA+DI+K+KRRLNE+YVK+ G+TYEEVEKTLDRDH
Sbjct: 122 ATPNSRIMVHQPSGGFQGQASDIERHARDILKMKRRLNEVYVKHTGRTYEEVEKTLDRDH 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIE 212
            M A EA  WGV+DKVL SR+++E
Sbjct: 182 FMDADEAQSWGVIDKVLTSRLEME 205


>gi|161501794|ref|YP_767292.2| ATP-dependent Clp protease proteolytic subunit [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 209

 Score =  353 bits (905), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 160/204 (78%), Positives = 185/204 (90%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           ++  D  + LVPMVVEQTNRGERSYDIYSRLLKERI+F+TG +EDHMATL+CAQLLFLEA
Sbjct: 2   RNPVDTAMALVPMVVEQTNRGERSYDIYSRLLKERIIFLTGAVEDHMATLVCAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI+LYINSPGGVVTAGMAIYDTMQFIKP +ST C+GQAASMGSLLL+AG K MRF
Sbjct: 62  ENPKKEIALYINSPGGVVTAGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLAAGHKDMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           A PN+RI++HQPSGGF GQASDIERHA+DI+K+KRRLNE+YVK+ G+TYEEVEKTLDRDH
Sbjct: 122 ATPNSRIMVHQPSGGFQGQASDIERHARDILKMKRRLNEVYVKHTGRTYEEVEKTLDRDH 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIE 212
            M A EA  WGV+DKVL SR+++E
Sbjct: 182 FMDADEAQSWGVIDKVLTSRLEME 205


>gi|15965008|ref|NP_385361.1| ATP-dependent Clp protease proteolytic subunit [Sinorhizobium
           meliloti 1021]
 gi|307301080|ref|ZP_07580849.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sinorhizobium
           meliloti BL225C]
 gi|307317814|ref|ZP_07597252.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sinorhizobium
           meliloti AK83]
 gi|18202306|sp|P58278|CLPP2_RHIME RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|15074187|emb|CAC45834.1| Probable ATP-dependent CLP protease proteolytic subunit
           [Sinorhizobium meliloti 1021]
 gi|306896576|gb|EFN27324.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sinorhizobium
           meliloti AK83]
 gi|306904035|gb|EFN34621.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sinorhizobium
           meliloti BL225C]
          Length = 208

 Score =  353 bits (905), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 159/204 (77%), Positives = 186/204 (91%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           ++  D  + LVPMVVEQTNRGERSYDIYSRLLKERI+F+TG +EDHMATL+CAQLLFLEA
Sbjct: 2   RNPVDTAMALVPMVVEQTNRGERSYDIYSRLLKERIIFLTGPVEDHMATLVCAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KE++LYINSPGGVVTAGMAIYDTMQFIKP +ST C+GQAASMGSLLL+AG K MRF
Sbjct: 62  ENPKKEVALYINSPGGVVTAGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLAAGHKDMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           A PN+RI++HQPSGGF GQASDIERHA+DI+K+KRRLNE+YVK+CG+TYEEVE+TLDRDH
Sbjct: 122 ATPNSRIMVHQPSGGFQGQASDIERHARDILKMKRRLNEVYVKHCGRTYEEVEQTLDRDH 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIE 212
            MSA EA DWG++DKV+ SR  +E
Sbjct: 182 FMSADEALDWGLIDKVITSRDAVE 205


>gi|227821606|ref|YP_002825576.1| ATP-dependent Clp protease proteolytic subunit [Sinorhizobium
           fredii NGR234]
 gi|227340605|gb|ACP24823.1| ATP-dependent Clp protease proteolytic subunit [Sinorhizobium
           fredii NGR234]
          Length = 210

 Score =  352 bits (904), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 160/204 (78%), Positives = 186/204 (91%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           ++  D  + LVPMVVEQTNRGERSYDIYSRLLKERI+F+TG +EDHMATL+CAQLLFLEA
Sbjct: 2   RNPVDTAMALVPMVVEQTNRGERSYDIYSRLLKERIIFLTGPVEDHMATLVCAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI+LYINSPGGVVTAGMAIYDTMQFIKP +ST C+GQAASMGSLLL+AG K MRF
Sbjct: 62  ENPKKEIALYINSPGGVVTAGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLAAGHKDMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           A PNARI++HQPSGGF GQASDIERHA+DI+K+KRRLNE+YV++CG+TYEEVE+TLDRDH
Sbjct: 122 ATPNARIMVHQPSGGFQGQASDIERHARDILKMKRRLNEVYVRHCGRTYEEVEQTLDRDH 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIE 212
            MS+ EA DWG++DKV+ SR  IE
Sbjct: 182 FMSSDEALDWGLIDKVITSREAIE 205


>gi|150396095|ref|YP_001326562.1| ATP-dependent Clp protease proteolytic subunit [Sinorhizobium
           medicae WSM419]
 gi|150027610|gb|ABR59727.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sinorhizobium
           medicae WSM419]
          Length = 208

 Score =  352 bits (904), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 159/204 (77%), Positives = 186/204 (91%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           ++  D  + LVPMVVEQTNRGERSYDIYSRLLKERI+F+TG +EDHMATL+CAQLLFLEA
Sbjct: 2   RNPVDTAMALVPMVVEQTNRGERSYDIYSRLLKERIIFLTGPVEDHMATLVCAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI+LYINSPGGVVTAGMAIYDTMQFIKP +ST C+GQAASMGSLLL+AG K MRF
Sbjct: 62  ENPKKEIALYINSPGGVVTAGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLAAGHKDMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           A PN+RI++HQPSGGF GQASDIERHA+DI+K+KRRLNE+YVK+CG+TYEEVE+TLDRDH
Sbjct: 122 ATPNSRIMVHQPSGGFQGQASDIERHARDILKMKRRLNEVYVKHCGRTYEEVEQTLDRDH 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIE 212
            MS+ EA DWG++DKV+ SR  +E
Sbjct: 182 FMSSDEALDWGLIDKVITSRDAVE 205


>gi|86357224|ref|YP_469116.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli CFN
           42]
 gi|190891272|ref|YP_001977814.1| endopeptidase Clp protein, subunit 2 [Rhizobium etli CIAT 652]
 gi|209548850|ref|YP_002280767.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|116243117|sp|Q2K9U7|CLPP2_RHIEC RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|86281326|gb|ABC90389.1| endopeptidase Clp, subunit 2 protein [Rhizobium etli CFN 42]
 gi|190696551|gb|ACE90636.1| endopeptidase Clp protein, subunit 2 [Rhizobium etli CIAT 652]
 gi|209534606|gb|ACI54541.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|327188463|gb|EGE55677.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli
           CNPAF512]
          Length = 209

 Score =  352 bits (903), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 160/204 (78%), Positives = 185/204 (90%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           ++  D  + LVPMVVEQTNRGERSYDIYSRLLKERI+F+TG +EDHMATL+CAQLLFLEA
Sbjct: 2   RNPVDTAMALVPMVVEQTNRGERSYDIYSRLLKERIIFLTGAVEDHMATLVCAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI+LYINSPGGVVTAGMAIYDTMQFIKP +ST C+GQAASMGSLLL+AG K MRF
Sbjct: 62  ENPKKEIALYINSPGGVVTAGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLAAGHKDMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           A PN+RI++HQPSGGF GQASDIERHA+DI+K+KRRLNE+YVK+ G+TYEEVEKTLDRDH
Sbjct: 122 ATPNSRIMVHQPSGGFQGQASDIERHARDILKMKRRLNEVYVKHTGRTYEEVEKTLDRDH 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIE 212
            M A EA  WGV+DKVL SR+++E
Sbjct: 182 FMDADEAQGWGVIDKVLTSRLEME 205


>gi|116243118|sp|Q1MIM7|CLPP2_RHIL3 RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|115256102|emb|CAK07183.1| putative ATP-dependent Clp protease proteolytic subunit [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 201

 Score =  351 bits (900), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 159/197 (80%), Positives = 182/197 (92%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQTNRGERSYDIYSRLLKERI+F+TG +EDHMATL+CAQLLFLEAENP+KEI
Sbjct: 1   MALVPMVVEQTNRGERSYDIYSRLLKERIIFLTGAVEDHMATLVCAQLLFLEAENPKKEI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGGVVTAGMAIYDTMQFIKP +ST C+GQAASMGSLLL+AG K MRFA PN+RI
Sbjct: 61  ALYINSPGGVVTAGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLAAGHKDMRFATPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGGF GQASDIERHA+DI+K+KRRLNE+YVK+ G+TYEEVEKTLDRDH M A EA
Sbjct: 121 MVHQPSGGFQGQASDIERHARDILKMKRRLNEVYVKHTGRTYEEVEKTLDRDHFMDADEA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
             WGV+DKVL SR+++E
Sbjct: 181 QSWGVIDKVLTSRLEME 197


>gi|218514228|ref|ZP_03511068.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli
           8C-3]
          Length = 201

 Score =  350 bits (898), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 159/197 (80%), Positives = 182/197 (92%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQTNRGERSYDIYSRLLKERI+F+TG +EDHMATL+CAQLLFLEAENP+KEI
Sbjct: 1   MALVPMVVEQTNRGERSYDIYSRLLKERIIFLTGAVEDHMATLVCAQLLFLEAENPKKEI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGGVVTAGMAIYDTMQFIKP +ST C+GQAASMGSLLL+AG K MRFA PN+RI
Sbjct: 61  ALYINSPGGVVTAGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLAAGHKDMRFATPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGGF GQASDIERHA+DI+K+KRRLNE+YVK+ G+TYEEVEKTLDRDH M A EA
Sbjct: 121 MVHQPSGGFQGQASDIERHARDILKMKRRLNEVYVKHTGRTYEEVEKTLDRDHFMDADEA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
             WGV+DKVL SR+++E
Sbjct: 181 QGWGVIDKVLTSRLEME 197


>gi|218672748|ref|ZP_03522417.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli
           GR56]
          Length = 203

 Score =  350 bits (898), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 159/197 (80%), Positives = 182/197 (92%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQTNRGERSYDIYSRLLKERI+F+TG +EDHMATL+CAQLLFLEAENP+KEI
Sbjct: 1   MALVPMVVEQTNRGERSYDIYSRLLKERIIFLTGAVEDHMATLVCAQLLFLEAENPKKEI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGGVVTAGMAIYDTMQFIKP +ST C+GQAASMGSLLL+AG K MRFA PN+RI
Sbjct: 61  ALYINSPGGVVTAGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLAAGHKDMRFATPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGGF GQASDIERHA+DI+K+KRRLNE+YVK+ G+TYEEVEKTLDRDH M A EA
Sbjct: 121 MVHQPSGGFQGQASDIERHARDILKMKRRLNEVYVKHTGRTYEEVEKTLDRDHFMDADEA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
             WGV+DKVL SR+++E
Sbjct: 181 QGWGVIDKVLTSRLEME 197


>gi|325292625|ref|YP_004278489.1| ATP-dependent Clp protease, proteolytic subunit [Agrobacterium sp.
           H13-3]
 gi|325060478|gb|ADY64169.1| ATP-dependent Clp protease, proteolytic subunit [Agrobacterium sp.
           H13-3]
          Length = 210

 Score =  350 bits (897), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 159/204 (77%), Positives = 185/204 (90%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           K+  D  + LVPMVVEQTNRGERSYDI+SRLLKERI+F+TG +ED MA+L+CAQLLFLEA
Sbjct: 2   KNPVDTAMALVPMVVEQTNRGERSYDIFSRLLKERIIFLTGPVEDQMASLVCAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI+LYINSPGGVVTAGMAIYDTMQFI+P +ST C+GQAASMGSLLL+AGEKGMRF
Sbjct: 62  ENPKKEIALYINSPGGVVTAGMAIYDTMQFIRPAVSTLCVGQAASMGSLLLAAGEKGMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           A PNARI++HQPSGGF GQASDIERHA+DI+K+KRRLNE+YVK+ G+T EEVEKTLDRDH
Sbjct: 122 ATPNARIMVHQPSGGFQGQASDIERHARDIIKMKRRLNEVYVKHTGRTLEEVEKTLDRDH 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIE 212
            M A EA DWGV+DK+L SR ++E
Sbjct: 182 FMDADEAKDWGVIDKILTSRQEME 205


>gi|15888588|ref|NP_354269.1| ATP-dependent Clp protease proteolytic subunit [Agrobacterium
           tumefaciens str. C58]
 gi|21759066|sp|Q8UFY6|CLPP2_AGRT5 RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|15156306|gb|AAK87054.1| ATP-dependent Clp protease, proteolytic subunit [Agrobacterium
           tumefaciens str. C58]
          Length = 210

 Score =  350 bits (897), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 159/204 (77%), Positives = 185/204 (90%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           K+  D  + LVPMVVEQTNRGERSYDI+SRLLKERI+F+TG +ED MA+L+CAQLLFLEA
Sbjct: 2   KNPVDTAMALVPMVVEQTNRGERSYDIFSRLLKERIIFLTGPVEDQMASLVCAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI+LYINSPGGVVTAGMAIYDTMQFI+P +ST C+GQAASMGSLLL+AGEKGMRF
Sbjct: 62  ENPKKEIALYINSPGGVVTAGMAIYDTMQFIRPAVSTLCVGQAASMGSLLLAAGEKGMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           A PNARI++HQPSGGF GQASDIERHA+DI+K+KRRLNE+YVK+ G+T EEVEKTLDRDH
Sbjct: 122 ATPNARIMVHQPSGGFQGQASDIERHARDIIKMKRRLNEVYVKHTGRTLEEVEKTLDRDH 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIE 212
            M A EA DWGV+DK+L SR ++E
Sbjct: 182 FMDADEAKDWGVIDKILTSRQEME 205


>gi|222148264|ref|YP_002549221.1| ATP-dependent Clp protease proteolytic subunit [Agrobacterium vitis
           S4]
 gi|221735252|gb|ACM36215.1| ATP-dependent Clp protease proteolytic subunit ClpP [Agrobacterium
           vitis S4]
          Length = 210

 Score =  348 bits (894), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 156/204 (76%), Positives = 186/204 (91%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           ++  D  + LVPMVVEQTNRGERSYDIYSRLLKERI+F+TG +EDHMA+L+CAQLLFLEA
Sbjct: 2   RNPVDTAMALVPMVVEQTNRGERSYDIYSRLLKERIIFLTGPVEDHMASLVCAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI++YINSPGGVVTAGMAIYDTMQFI+P +ST C+GQAASMGSLLL+AGEKGMRF
Sbjct: 62  ENPKKEIAIYINSPGGVVTAGMAIYDTMQFIRPAVSTLCVGQAASMGSLLLAAGEKGMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           A PNARI++HQPSGGF GQASDIERHA+DI+K+KRRLNE+YVK+ G+T EEVE TLDRDH
Sbjct: 122 ATPNARIMVHQPSGGFQGQASDIERHARDIIKMKRRLNEVYVKHTGRTLEEVEHTLDRDH 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIE 212
            M ++EA DWG++DK+L +R +IE
Sbjct: 182 FMESTEAKDWGLIDKILTTRSEIE 205


>gi|163759316|ref|ZP_02166402.1| ATP-dependent Clp protease proteolytic subunit [Hoeflea
           phototrophica DFL-43]
 gi|162283720|gb|EDQ34005.1| ATP-dependent Clp protease proteolytic subunit [Hoeflea
           phototrophica DFL-43]
          Length = 210

 Score =  344 bits (882), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 157/200 (78%), Positives = 181/200 (90%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
           D  + LVPMVVEQTNRGERSYDI+SRLLKERI+F+TG +EDHMATL+CAQLLFLEAENP+
Sbjct: 6   DTAMALVPMVVEQTNRGERSYDIFSRLLKERIIFITGPVEDHMATLVCAQLLFLEAENPK 65

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           KEI+LYINSPGGVVTAGMAIYDTMQFIKP IST C+GQAASMGSLLL AGEKGMRFA PN
Sbjct: 66  KEIALYINSPGGVVTAGMAIYDTMQFIKPAISTLCVGQAASMGSLLLCAGEKGMRFATPN 125

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           AR+++HQPSGGF GQASDIERHAQDI+K+KRRLNE+YVK+ G+ YE VEKTLDRDH M+A
Sbjct: 126 ARVMVHQPSGGFQGQASDIERHAQDIIKMKRRLNEVYVKHTGQDYETVEKTLDRDHFMTA 185

Query: 193 SEACDWGVVDKVLMSRIDIE 212
            EA ++G++D+V   R +IE
Sbjct: 186 EEALEFGLIDRVFDKRENIE 205


>gi|260460897|ref|ZP_05809147.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mesorhizobium
           opportunistum WSM2075]
 gi|259033474|gb|EEW34735.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mesorhizobium
           opportunistum WSM2075]
          Length = 209

 Score =  342 bits (878), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 154/200 (77%), Positives = 183/200 (91%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           K+  + ++ LVPMVVEQTNRGER+YDI+SRLLKERI+F+TG +ED MATL+CAQLLFLEA
Sbjct: 2   KNPVETYMNLVPMVVEQTNRGERAYDIFSRLLKERIIFITGPVEDGMATLVCAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI+LYINSPGGVVT+GMAIYDTMQFIKP +ST C+GQAASMGSLLL+AG K MRF
Sbjct: 62  ENPKKEINLYINSPGGVVTSGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLTAGHKDMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           A PNARI++HQPSGGF GQASDIERHAQDI+K+KRRLNE+YVK+ GK+YEE+EKTLDRDH
Sbjct: 122 ATPNARIMVHQPSGGFQGQASDIERHAQDIIKLKRRLNEVYVKHTGKSYEEIEKTLDRDH 181

Query: 189 IMSASEACDWGVVDKVLMSR 208
            M+A EA D+G++DKV+ SR
Sbjct: 182 FMTADEARDFGLIDKVISSR 201


>gi|13476994|ref|NP_108564.1| ATP-dependent Clp protease proteolytic subunit [Mesorhizobium loti
           MAFF303099]
 gi|18202642|sp|Q982V6|CLPP2_RHILO RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|14027757|dbj|BAB54350.1| ATP-dependent Clp proteinase [Mesorhizobium loti MAFF303099]
          Length = 209

 Score =  340 bits (871), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 153/200 (76%), Positives = 182/200 (91%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           K+  + ++ LVPMVVEQTNRGER+YDI+SRLLKERI+F+TG +ED MATL+CAQLLFLEA
Sbjct: 2   KNPVETYMNLVPMVVEQTNRGERAYDIFSRLLKERIIFITGPVEDGMATLVCAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI+LYINSPGGVVT+GMAIYDTMQFIKP +ST C+GQAASMGSLLL+AG K MRF
Sbjct: 62  ENPKKEINLYINSPGGVVTSGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLTAGHKDMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           A PNARI++HQPSGGF GQASDIERHA DIVK+KRRLNE+YVK+ GK+YEE+E+TLDRDH
Sbjct: 122 ATPNARIMVHQPSGGFQGQASDIERHAMDIVKLKRRLNEVYVKHTGKSYEEIERTLDRDH 181

Query: 189 IMSASEACDWGVVDKVLMSR 208
            M+A EA D+G++DKV+ SR
Sbjct: 182 FMTADEAKDFGLIDKVISSR 201


>gi|319784104|ref|YP_004143580.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
 gi|317169992|gb|ADV13530.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
          Length = 209

 Score =  340 bits (871), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 153/200 (76%), Positives = 182/200 (91%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           K+  + ++ LVPMVVEQTNRGER+YDI+SRLLKERI+F+TG +ED MATL+CAQLLFLEA
Sbjct: 2   KNPVETYMNLVPMVVEQTNRGERAYDIFSRLLKERIIFITGPVEDGMATLVCAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI+LYINSPGGVVT+GMAIYDTMQFIKP +ST C+GQAASMGSLLL+AG K MRF
Sbjct: 62  ENPKKEINLYINSPGGVVTSGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLTAGHKDMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           A PNARI++HQPSGGF GQASDIERHA DI+K+KRRLNE+YVK+ GK+YEE+EKTLDRDH
Sbjct: 122 ATPNARIMVHQPSGGFQGQASDIERHALDIIKLKRRLNEVYVKHTGKSYEEIEKTLDRDH 181

Query: 189 IMSASEACDWGVVDKVLMSR 208
            M+A EA D+G++DKV+ SR
Sbjct: 182 FMTADEAKDFGLIDKVISSR 201


>gi|49474139|ref|YP_032181.1| ATP-dependent Clp protease proteolytic subunit [Bartonella quintana
           str. Toulouse]
 gi|67460275|sp|Q6G178|CLPP_BARQU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|49239643|emb|CAF26003.1| ATP-dependent clp protease proteolytic subunit [Bartonella quintana
           str. Toulouse]
          Length = 210

 Score =  331 bits (849), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 150/201 (74%), Positives = 178/201 (88%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           L LVPMV+EQTNRGER+YDI+SRLLKERI+F+ G +ED MA L+CAQLLFLEAENP+KEI
Sbjct: 9   LSLVPMVIEQTNRGERAYDIFSRLLKERIIFINGPVEDSMAMLVCAQLLFLEAENPKKEI 68

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGGVVT+GMAIYDTMQFI+PP+ST CMGQAASMGSLLL+AG KG RF LPNARI
Sbjct: 69  SLYINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGAKGHRFTLPNARI 128

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGGF GQASDIERHAQDI+K+KRRLNEIYV++ G+ YE +E+TLDRDH M+A EA
Sbjct: 129 MVHQPSGGFQGQASDIERHAQDIIKMKRRLNEIYVQHTGQDYEVIERTLDRDHFMTAEEA 188

Query: 196 CDWGVVDKVLMSRIDIEEKSK 216
             +G+VD V+  R + E++ K
Sbjct: 189 KQFGLVDDVIQYRAETEKEEK 209


>gi|153009536|ref|YP_001370751.1| ATP-dependent Clp protease proteolytic subunit [Ochrobactrum
           anthropi ATCC 49188]
 gi|151561424|gb|ABS14922.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ochrobactrum
           anthropi ATCC 49188]
          Length = 230

 Score =  331 bits (849), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 148/200 (74%), Positives = 179/200 (89%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  +  + LVPMVVEQTNRGER+YDI+SRLLKERI+FV G +ED M+ L+CAQLLFLEA
Sbjct: 23  RDPIETVMNLVPMVVEQTNRGERAYDIFSRLLKERIIFVNGPVEDGMSMLVCAQLLFLEA 82

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI++YINSPGGVVT+GMAIYDTMQFI+PP+ST CMGQAASMGSLLL+AG  G R+
Sbjct: 83  ENPKKEINMYINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGATGQRY 142

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           ALPNARI++HQPSGGF GQASDIERHAQDI+K+KRRLNEIYVK+ G+ YE +E+TLDRDH
Sbjct: 143 ALPNARIMVHQPSGGFQGQASDIERHAQDIIKMKRRLNEIYVKHTGRDYETIERTLDRDH 202

Query: 189 IMSASEACDWGVVDKVLMSR 208
            M+A EA ++G++DKV+ SR
Sbjct: 203 FMTAQEALEFGLIDKVVESR 222


>gi|90419399|ref|ZP_01227309.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90336336|gb|EAS50077.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 210

 Score =  331 bits (849), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 151/197 (76%), Positives = 178/197 (90%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQTNRGER+YDI+SRLLKER++F+TG IED MATL+CAQLLFLEAENP+KEI
Sbjct: 9   MNLVPMVVEQTNRGERAYDIFSRLLKERVIFITGPIEDSMATLVCAQLLFLEAENPKKEI 68

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGGVVT+GMAIYDTMQFIKP +ST C+GQAASMGSLLL AG K MRFA PNARI
Sbjct: 69  ALYINSPGGVVTSGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLCAGHKDMRFATPNARI 128

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGGFSGQASDIERHAQDI+K+KRRLNE+YV++ G+ YE VE+TLDRDH M+A EA
Sbjct: 129 MVHQPSGGFSGQASDIERHAQDIIKLKRRLNEVYVEHTGQDYETVERTLDRDHFMTAQEA 188

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G++DKV  SR  +E
Sbjct: 189 REFGLIDKVYSSRDALE 205


>gi|163868071|ref|YP_001609275.1| ATP-dependent Clp protease proteolytic subunit [Bartonella
           tribocorum CIP 105476]
 gi|189082448|sp|A9ISA4|CLPP_BART1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|161017722|emb|CAK01280.1| ATP-dependent Clp protease, proteolytic subunit [Bartonella
           tribocorum CIP 105476]
          Length = 210

 Score =  331 bits (848), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 152/207 (73%), Positives = 180/207 (86%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           D     L LVPMV+EQTNRGER+YDI+SRLLKERI+F+ G +ED MA L+CAQLLFLEAE
Sbjct: 3   DPMKTALSLVPMVIEQTNRGERAYDIFSRLLKERIIFINGPVEDGMAMLVCAQLLFLEAE 62

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP+KEISLYINSPGGVVT+GMAIYDTMQFI+PP+ST CMGQAASMGSLLL+AG KG RFA
Sbjct: 63  NPKKEISLYINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGAKGHRFA 122

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPNARI++HQPSGGF GQASDIERHAQDI+K+KRRLNEIYV++ G+ YE +E+TLDRDH 
Sbjct: 123 LPNARIMVHQPSGGFQGQASDIERHAQDIIKMKRRLNEIYVQHTGQGYEVIERTLDRDHF 182

Query: 190 MSASEACDWGVVDKVLMSRIDIEEKSK 216
           M+A EA  +G+VD V+  R + E++ K
Sbjct: 183 MTAEEAKAFGLVDDVIHYRAETEKEEK 209


>gi|239831859|ref|ZP_04680188.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ochrobactrum
           intermedium LMG 3301]
 gi|239824126|gb|EEQ95694.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ochrobactrum
           intermedium LMG 3301]
          Length = 230

 Score =  330 bits (847), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 147/200 (73%), Positives = 179/200 (89%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  +  + LVPMVVEQTNRGER+YDI+SRLLKERI+FV G +ED M+ L+CAQLLFLEA
Sbjct: 23  RDPIETVMNLVPMVVEQTNRGERAYDIFSRLLKERIIFVNGPVEDGMSMLVCAQLLFLEA 82

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI++YINSPGGVVT+GMAIYDTMQFI+PP+ST CMGQAASMGSLLL+AG  G R+
Sbjct: 83  ENPKKEINMYINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGATGQRY 142

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           ALPNARI++HQPSGGF GQASDIERHAQDI+K+KRRLNEIYVK+ G+ YE +E+TLDRDH
Sbjct: 143 ALPNARIMVHQPSGGFQGQASDIERHAQDIIKMKRRLNEIYVKHTGRDYETIERTLDRDH 202

Query: 189 IMSASEACDWGVVDKVLMSR 208
            M+A EA ++G++DKV+ +R
Sbjct: 203 FMTAQEALEFGLIDKVVEAR 222


>gi|114707244|ref|ZP_01440142.1| ATP-dependent Clp protease proteolytic subunit [Fulvimarina pelagi
           HTCC2506]
 gi|114537440|gb|EAU40566.1| ATP-dependent Clp protease proteolytic subunit [Fulvimarina pelagi
           HTCC2506]
          Length = 217

 Score =  330 bits (847), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 148/197 (75%), Positives = 178/197 (90%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQTNRGER+YDI+SRLLKER++F+TG IED MATL+CAQLLFLEAENP+KEI
Sbjct: 9   MNLVPMVVEQTNRGERAYDIFSRLLKERVIFITGPIEDSMATLVCAQLLFLEAENPKKEI 68

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGGVVT+GMAIYDTMQFI+P ++T C+GQAASMGSLLL AGEK MRFA PNARI
Sbjct: 69  ALYINSPGGVVTSGMAIYDTMQFIRPAVTTLCIGQAASMGSLLLCAGEKDMRFATPNARI 128

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGGF GQASDIERHAQDI+K+KRRLNE YVK+ G+ YE +E+TLDRDH M+A E+
Sbjct: 129 MVHQPSGGFQGQASDIERHAQDIIKLKRRLNETYVKHTGQDYETIERTLDRDHFMTAEES 188

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G++DKV  SR++ E
Sbjct: 189 LEFGLIDKVYSSRVEQE 205


>gi|240850274|ref|YP_002971667.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bartonella
           grahamii as4aup]
 gi|240267397|gb|ACS50985.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bartonella
           grahamii as4aup]
          Length = 210

 Score =  329 bits (844), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 150/201 (74%), Positives = 178/201 (88%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           L LVPMV+EQTNRGER+YDI+SRLLKERI+F+ G +ED MA L+CAQLLFLEAENP+KEI
Sbjct: 9   LSLVPMVIEQTNRGERAYDIFSRLLKERIIFINGPVEDGMAMLVCAQLLFLEAENPKKEI 68

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGGVVT+GMAIYDTMQFI+PP+ST CMGQAASMGSLLL+AG KG RF LPNARI
Sbjct: 69  SLYINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGAKGHRFTLPNARI 128

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGGF GQASDIERHAQDI+K+KRRLNEIYV++ G+ YE +E+TLDRDH M+A EA
Sbjct: 129 MVHQPSGGFQGQASDIERHAQDIIKMKRRLNEIYVQHTGQDYEIIERTLDRDHFMTAEEA 188

Query: 196 CDWGVVDKVLMSRIDIEEKSK 216
             +G+VD V+  R + E++ K
Sbjct: 189 KAFGLVDDVIQYRAETEKEEK 209


>gi|110633522|ref|YP_673730.1| ATP-dependent Clp protease proteolytic subunit [Mesorhizobium sp.
           BNC1]
 gi|116243101|sp|Q11J60|CLPP1_MESSB RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|110284506|gb|ABG62565.1| ATP-dependent Clp protease proteolytic subunit ClpP [Chelativorans
           sp. BNC1]
          Length = 210

 Score =  329 bits (844), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 150/204 (73%), Positives = 180/204 (88%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           K+  +  + LVPMVVEQTNRGER+YDI+SRLLKERI+F+TG +ED MATL+CAQLLFLEA
Sbjct: 2   KNPVETAMNLVPMVVEQTNRGERAYDIFSRLLKERIIFITGPVEDGMATLVCAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI+LYINSPGGVVT+GMAIYDTMQFI+PP+ST C+GQAASMGSLLL AG K MRF
Sbjct: 62  ENPKKEIALYINSPGGVVTSGMAIYDTMQFIQPPVSTLCIGQAASMGSLLLCAGHKDMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           A PNAR+++HQPSGGF GQASDIERHAQDI+K+KRRLNEIYVK+ G+ Y+ +E+TLDRDH
Sbjct: 122 ATPNARVMVHQPSGGFQGQASDIERHAQDIIKLKRRLNEIYVKHTGQDYDTIERTLDRDH 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIE 212
            M+A EA  +G+VD+V+  R  IE
Sbjct: 182 FMTADEAQAFGLVDRVISEREAIE 205


>gi|62290024|ref|YP_221817.1| ATP-dependent Clp protease proteolytic subunit [Brucella abortus
           bv. 1 str. 9-941]
 gi|82699951|ref|YP_414525.1| ATP-dependent Clp protease proteolytic subunit [Brucella melitensis
           biovar Abortus 2308]
 gi|161619061|ref|YP_001592948.1| ATP-dependent Clp protease proteolytic subunit [Brucella canis ATCC
           23365]
 gi|163843378|ref|YP_001627782.1| ATP-dependent Clp protease proteolytic subunit [Brucella suis ATCC
           23445]
 gi|189024264|ref|YP_001935032.1| Clp protease [Brucella abortus S19]
 gi|254689336|ref|ZP_05152590.1| ATP-dependent Clp protease proteolytic subunit [Brucella abortus
           bv. 6 str. 870]
 gi|254693820|ref|ZP_05155648.1| ATP-dependent Clp protease proteolytic subunit [Brucella abortus
           bv. 3 str. Tulya]
 gi|254697469|ref|ZP_05159297.1| ATP-dependent Clp protease proteolytic subunit [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|254701854|ref|ZP_05163682.1| ATP-dependent Clp protease proteolytic subunit [Brucella suis bv. 5
           str. 513]
 gi|254706705|ref|ZP_05168533.1| ATP-dependent Clp protease proteolytic subunit [Brucella
           pinnipedialis M163/99/10]
 gi|254710187|ref|ZP_05171998.1| ATP-dependent Clp protease proteolytic subunit [Brucella
           pinnipedialis B2/94]
 gi|254714185|ref|ZP_05175996.1| ATP-dependent Clp protease proteolytic subunit [Brucella ceti
           M644/93/1]
 gi|254717620|ref|ZP_05179431.1| ATP-dependent Clp protease proteolytic subunit [Brucella ceti
           M13/05/1]
 gi|254719174|ref|ZP_05180985.1| ATP-dependent Clp protease proteolytic subunit [Brucella sp. 83/13]
 gi|254730366|ref|ZP_05188944.1| ATP-dependent Clp protease proteolytic subunit [Brucella abortus
           bv. 4 str. 292]
 gi|256031681|ref|ZP_05445295.1| ATP-dependent Clp protease proteolytic subunit [Brucella
           pinnipedialis M292/94/1]
 gi|256061193|ref|ZP_05451345.1| ATP-dependent Clp protease proteolytic subunit [Brucella neotomae
           5K33]
 gi|256159837|ref|ZP_05457570.1| ATP-dependent Clp protease proteolytic subunit [Brucella ceti
           M490/95/1]
 gi|256255083|ref|ZP_05460619.1| ATP-dependent Clp protease proteolytic subunit [Brucella ceti
           B1/94]
 gi|256257582|ref|ZP_05463118.1| ATP-dependent Clp protease proteolytic subunit [Brucella abortus
           bv. 9 str. C68]
 gi|260168815|ref|ZP_05755626.1| ATP-dependent Clp protease proteolytic subunit [Brucella sp. F5/99]
 gi|260546576|ref|ZP_05822315.1| clp protease [Brucella abortus NCTC 8038]
 gi|260566355|ref|ZP_05836825.1| clp protease [Brucella suis bv. 4 str. 40]
 gi|260754852|ref|ZP_05867200.1| endopeptidase Clp [Brucella abortus bv. 6 str. 870]
 gi|260758069|ref|ZP_05870417.1| endopeptidase Clp [Brucella abortus bv. 4 str. 292]
 gi|260761893|ref|ZP_05874236.1| endopeptidase Clp [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883864|ref|ZP_05895478.1| ClpP [Brucella abortus bv. 9 str. C68]
 gi|261214103|ref|ZP_05928384.1| endopeptidase Clp [Brucella abortus bv. 3 str. Tulya]
 gi|261219456|ref|ZP_05933737.1| ATP-dependent Clp protease [Brucella ceti M13/05/1]
 gi|261222276|ref|ZP_05936557.1| ClpP [Brucella ceti B1/94]
 gi|261314167|ref|ZP_05953364.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261317744|ref|ZP_05956941.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261321952|ref|ZP_05961149.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|261325200|ref|ZP_05964397.1| ClpP [Brucella neotomae 5K33]
 gi|261752415|ref|ZP_05996124.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brucella suis
           bv. 5 str. 513]
 gi|261758300|ref|ZP_06002009.1| clp protease [Brucella sp. F5/99]
 gi|265984170|ref|ZP_06096905.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|265988775|ref|ZP_06101332.1| ClpP [Brucella pinnipedialis M292/94/1]
 gi|265998240|ref|ZP_06110797.1| ClpP [Brucella ceti M490/95/1]
 gi|294852448|ref|ZP_06793121.1| Clp protease [Brucella sp. NVSL 07-0026]
 gi|306838166|ref|ZP_07471022.1| ATP-dependent Clp protease proteolytic subunit [Brucella sp. NF
           2653]
 gi|306841836|ref|ZP_07474518.1| ATP-dependent Clp protease proteolytic subunit [Brucella sp. BO2]
 gi|306843974|ref|ZP_07476569.1| ATP-dependent Clp protease proteolytic subunit [Brucella sp. BO1]
 gi|18203228|sp|Q9L7X6|CLPP_BRUAB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|90101403|sp|Q2YPX1|CLPP_BRUA2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|189082449|sp|A9M5C2|CLPP_BRUC2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|189082450|sp|B0CGR1|CLPP_BRUSI RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706442|sp|B2S5W1|CLPP_BRUA1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|6942106|gb|AAF32318.1|AF218420_1 ClpP [Brucella abortus]
 gi|62196156|gb|AAX74456.1| ClpP, ATP-dependent Clp protease, proteolytic subunit ClpP
           [Brucella abortus bv. 1 str. 9-941]
 gi|82616052|emb|CAJ11088.1| Clp protease [Brucella melitensis biovar Abortus 2308]
 gi|161335872|gb|ABX62177.1| ATP-dependent Clp protease proteolytic subunit [Brucella canis ATCC
           23365]
 gi|163674101|gb|ABY38212.1| ATP-dependent Clp protease proteolytic subunit [Brucella suis ATCC
           23445]
 gi|189019836|gb|ACD72558.1| Clp protease [Brucella abortus S19]
 gi|260095626|gb|EEW79503.1| clp protease [Brucella abortus NCTC 8038]
 gi|260155873|gb|EEW90953.1| clp protease [Brucella suis bv. 4 str. 40]
 gi|260668387|gb|EEX55327.1| endopeptidase Clp [Brucella abortus bv. 4 str. 292]
 gi|260672325|gb|EEX59146.1| endopeptidase Clp [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674960|gb|EEX61781.1| endopeptidase Clp [Brucella abortus bv. 6 str. 870]
 gi|260873392|gb|EEX80461.1| ClpP [Brucella abortus bv. 9 str. C68]
 gi|260915710|gb|EEX82571.1| endopeptidase Clp [Brucella abortus bv. 3 str. Tulya]
 gi|260920860|gb|EEX87513.1| ClpP [Brucella ceti B1/94]
 gi|260924545|gb|EEX91113.1| ATP-dependent Clp protease [Brucella ceti M13/05/1]
 gi|261294642|gb|EEX98138.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|261296967|gb|EEY00464.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261301180|gb|EEY04677.1| ClpP [Brucella neotomae 5K33]
 gi|261303193|gb|EEY06690.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261738284|gb|EEY26280.1| clp protease [Brucella sp. F5/99]
 gi|261742168|gb|EEY30094.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brucella suis
           bv. 5 str. 513]
 gi|262552708|gb|EEZ08698.1| ClpP [Brucella ceti M490/95/1]
 gi|264660972|gb|EEZ31233.1| ClpP [Brucella pinnipedialis M292/94/1]
 gi|264662762|gb|EEZ33023.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|294821037|gb|EFG38036.1| Clp protease [Brucella sp. NVSL 07-0026]
 gi|306275729|gb|EFM57453.1| ATP-dependent Clp protease proteolytic subunit [Brucella sp. BO1]
 gi|306288063|gb|EFM59460.1| ATP-dependent Clp protease proteolytic subunit [Brucella sp. BO2]
 gi|306406756|gb|EFM62979.1| ATP-dependent Clp protease proteolytic subunit [Brucella sp. NF
           2653]
          Length = 209

 Score =  328 bits (842), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 148/208 (71%), Positives = 183/208 (87%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  +  + LVPMVVEQTNRGER+YDI+SRLLKERI+FV G +ED M+ L+CAQLLFLEA
Sbjct: 2   RDPIETVMNLVPMVVEQTNRGERAYDIFSRLLKERIIFVNGPVEDGMSMLVCAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI++YINSPGGVVT+GMAIYDTMQFI+PP+ST CMGQAASMGSLLL+AG  G R+
Sbjct: 62  ENPKKEINMYINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGATGHRY 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           ALPNARI++HQPSGGF GQASDIERHAQDI+K+KRRLNEIYVK+ G+ Y+ +E+TLDRDH
Sbjct: 122 ALPNARIMVHQPSGGFQGQASDIERHAQDIIKMKRRLNEIYVKHTGRDYDTIERTLDRDH 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIEEKSK 216
            M+A EA ++G++DKV+ +R    ++SK
Sbjct: 182 FMTAQEALEFGLIDKVVEARDVSADESK 209


>gi|319898776|ref|YP_004158869.1| ATP-dependent Clp protease, proteolytic subunit [Bartonella
           clarridgeiae 73]
 gi|319402740|emb|CBI76287.1| ATP-dependent Clp protease, proteolytic subunit [Bartonella
           clarridgeiae 73]
          Length = 210

 Score =  328 bits (842), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 149/201 (74%), Positives = 179/201 (89%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           L LVPMVVEQTNRGER+YDI+SRLLKERI+F+ G +ED+MA L+CAQLLFLEAENP+KEI
Sbjct: 9   LSLVPMVVEQTNRGERAYDIFSRLLKERIIFINGPVEDNMAMLVCAQLLFLEAENPKKEI 68

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGGVVT+GMAIYDTMQFI+P +ST CMGQAASMGSLLL+AG  G RFALPNARI
Sbjct: 69  NLYINSPGGVVTSGMAIYDTMQFIRPSVSTLCMGQAASMGSLLLTAGATGRRFALPNARI 128

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGGF GQASDIERHAQDIVK+KRRLNEIYV++ G++YE +EKTLDRDH M+A E+
Sbjct: 129 MVHQPSGGFQGQASDIERHAQDIVKMKRRLNEIYVQHTGQSYEVIEKTLDRDHFMTAEES 188

Query: 196 CDWGVVDKVLMSRIDIEEKSK 216
             +G++D V+  R + E++ K
Sbjct: 189 KQFGLIDDVIQYRAETEKEEK 209


>gi|148558952|ref|YP_001259031.1| ATP-dependent Clp protease proteolytic subunit [Brucella ovis ATCC
           25840]
 gi|297248424|ref|ZP_06932142.1| ATP-dependent Clp protease, protease subunit [Brucella abortus bv.
           5 str. B3196]
 gi|148370209|gb|ABQ60188.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brucella ovis
           ATCC 25840]
 gi|297175593|gb|EFH34940.1| ATP-dependent Clp protease, protease subunit [Brucella abortus bv.
           5 str. B3196]
          Length = 228

 Score =  328 bits (841), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 148/208 (71%), Positives = 183/208 (87%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  +  + LVPMVVEQTNRGER+YDI+SRLLKERI+FV G +ED M+ L+CAQLLFLEA
Sbjct: 21  RDPIETVMNLVPMVVEQTNRGERAYDIFSRLLKERIIFVNGPVEDGMSMLVCAQLLFLEA 80

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI++YINSPGGVVT+GMAIYDTMQFI+PP+ST CMGQAASMGSLLL+AG  G R+
Sbjct: 81  ENPKKEINMYINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGATGHRY 140

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           ALPNARI++HQPSGGF GQASDIERHAQDI+K+KRRLNEIYVK+ G+ Y+ +E+TLDRDH
Sbjct: 141 ALPNARIMVHQPSGGFQGQASDIERHAQDIIKMKRRLNEIYVKHTGRDYDTIERTLDRDH 200

Query: 189 IMSASEACDWGVVDKVLMSRIDIEEKSK 216
            M+A EA ++G++DKV+ +R    ++SK
Sbjct: 201 FMTAQEALEFGLIDKVVEARDVSADESK 228


>gi|49475380|ref|YP_033421.1| ATP-dependent Clp protease proteolytic subunit [Bartonella henselae
           str. Houston-1]
 gi|67460276|sp|Q6G3Z3|CLPP_BARHE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|49238186|emb|CAF27396.1| ATP-dependent clp protease proteolytic subunit [Bartonella henselae
           str. Houston-1]
          Length = 210

 Score =  328 bits (840), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 148/201 (73%), Positives = 178/201 (88%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           L LVPMV+EQTNRGER+YDI+SRLLKERI+F+ G +ED MA L+CAQLLFLEAENP+KEI
Sbjct: 9   LSLVPMVIEQTNRGERAYDIFSRLLKERIIFINGPVEDGMAMLVCAQLLFLEAENPKKEI 68

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGGVVT+GMAIYDTMQFI+PP+ST CMGQAASMGSLLL+AG KG RF LPNARI
Sbjct: 69  SLYINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGAKGHRFTLPNARI 128

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGGF GQASDIERHAQDI+K+K+RLNEIYV++ G+ Y+ +E+TLDRDH M+A EA
Sbjct: 129 MVHQPSGGFQGQASDIERHAQDIIKMKQRLNEIYVQHTGQNYDVIERTLDRDHFMTAEEA 188

Query: 196 CDWGVVDKVLMSRIDIEEKSK 216
             +G+VD V+  R + E++ K
Sbjct: 189 KQFGLVDDVIQYRAETEKEEK 209


>gi|319405542|emb|CBI79161.1| ATP-dependent Clp protease, proteolytic subunit [Bartonella sp. AR
           15-3]
          Length = 210

 Score =  328 bits (840), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 148/208 (71%), Positives = 180/208 (86%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D     L LVPMV+EQTNRGER+YDI+SRLLKERI+F+ G +ED+MA L+CAQLLFLEA
Sbjct: 2   RDPTKKVLSLVPMVIEQTNRGERAYDIFSRLLKERIIFINGPVEDNMAMLVCAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI+LYINSPGG+VT+GMAIYDTMQFI+P +ST CMGQAASMGSLLL+AG  G RF
Sbjct: 62  ENPKKEINLYINSPGGMVTSGMAIYDTMQFIRPSVSTLCMGQAASMGSLLLTAGAAGRRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           ALPNARI++HQPSGGF GQASDIERHAQDI+K+KRRLNEIYV++ G+ YE +EKTLDRDH
Sbjct: 122 ALPNARIMVHQPSGGFQGQASDIERHAQDIIKMKRRLNEIYVQHTGQNYEVIEKTLDRDH 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIEEKSK 216
            M+A EA  +G++D V+  R + E++ K
Sbjct: 182 FMTAEEAKQFGLIDDVIQYRAETEKEEK 209


>gi|225627583|ref|ZP_03785620.1| ATP-dependent Clp protease proteolytic subunit [Brucella ceti str.
           Cudo]
 gi|237815533|ref|ZP_04594530.1| ATP-dependent Clp protease proteolytic subunit [Brucella abortus
           str. 2308 A]
 gi|225617588|gb|EEH14633.1| ATP-dependent Clp protease proteolytic subunit [Brucella ceti str.
           Cudo]
 gi|237788831|gb|EEP63042.1| ATP-dependent Clp protease proteolytic subunit [Brucella abortus
           str. 2308 A]
          Length = 247

 Score =  327 bits (839), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 148/208 (71%), Positives = 183/208 (87%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  +  + LVPMVVEQTNRGER+YDI+SRLLKERI+FV G +ED M+ L+CAQLLFLEA
Sbjct: 40  RDPIETVMNLVPMVVEQTNRGERAYDIFSRLLKERIIFVNGPVEDGMSMLVCAQLLFLEA 99

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI++YINSPGGVVT+GMAIYDTMQFI+PP+ST CMGQAASMGSLLL+AG  G R+
Sbjct: 100 ENPKKEINMYINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGATGHRY 159

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           ALPNARI++HQPSGGF GQASDIERHAQDI+K+KRRLNEIYVK+ G+ Y+ +E+TLDRDH
Sbjct: 160 ALPNARIMVHQPSGGFQGQASDIERHAQDIIKMKRRLNEIYVKHTGRDYDTIERTLDRDH 219

Query: 189 IMSASEACDWGVVDKVLMSRIDIEEKSK 216
            M+A EA ++G++DKV+ +R    ++SK
Sbjct: 220 FMTAQEALEFGLIDKVVEARDVSADESK 247


>gi|23501987|ref|NP_698114.1| ATP-dependent Clp protease proteolytic subunit [Brucella suis 1330]
 gi|38257636|sp|Q8G0I4|CLPP_BRUSU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|23347937|gb|AAN30029.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brucella suis
           1330]
          Length = 209

 Score =  327 bits (838), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 148/208 (71%), Positives = 182/208 (87%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  +  + LVPMVVEQTNRGER+YDI+SRLLKERI+FV G +ED M+ L+CAQLLFLEA
Sbjct: 2   RDPIETVMNLVPMVVEQTNRGERAYDIFSRLLKERIIFVNGPVEDGMSMLVCAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI++YINSPGGVVT+GMAIYDTMQFI+PP+ST CMGQAASMGSLLL+AG  G R+
Sbjct: 62  ENPKKEINMYINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGATGHRY 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           ALPNARI++HQPSGGF GQASDIERHAQDI+K+KRRLNEIYVK+ G+ Y+ +E+TLDRDH
Sbjct: 122 ALPNARIMVHQPSGGFQGQASDIERHAQDIIKMKRRLNEIYVKHTGRDYDTIERTLDRDH 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIEEKSK 216
            M+A EA ++G++DKV+  R    ++SK
Sbjct: 182 FMTAQEALEFGLIDKVVEVRDVSADESK 209


>gi|319404099|emb|CBI77689.1| ATP-dependent Clp protease, proteolytic subunit [Bartonella
           rochalimae ATCC BAA-1498]
 gi|319407112|emb|CBI80749.1| ATP-dependent Clp protease, proteolytic subunit [Bartonella sp.
           1-1C]
          Length = 210

 Score =  326 bits (836), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 147/201 (73%), Positives = 178/201 (88%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           L LVPMVVEQTNRGER+YDI+SRLLKERI+F+ G +ED+MA L+CAQLLFLEAENP+KEI
Sbjct: 9   LSLVPMVVEQTNRGERAYDIFSRLLKERIIFINGPVEDNMAMLVCAQLLFLEAENPKKEI 68

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGGVVT+GMAIYDTMQFI+P +ST CMGQAASMGSLLL+AG  G RFALPNARI
Sbjct: 69  NLYINSPGGVVTSGMAIYDTMQFIRPSVSTLCMGQAASMGSLLLTAGATGRRFALPNARI 128

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGGF GQASDIERHAQDI+K+KRRLNEIYV++ G++YE +E TLDRDH M+A E+
Sbjct: 129 MVHQPSGGFQGQASDIERHAQDIIKMKRRLNEIYVQHTGQSYEVIENTLDRDHFMTAEES 188

Query: 196 CDWGVVDKVLMSRIDIEEKSK 216
             +G++D V+  R + E++ K
Sbjct: 189 KQFGLIDDVIQYRAETEKEEK 209


>gi|256369536|ref|YP_003107046.1| ATP-dependent Clp protease proteolytic subunit [Brucella microti
           CCM 4915]
 gi|255999698|gb|ACU48097.1| ATP-dependent Clp protease proteolytic subunit [Brucella microti
           CCM 4915]
          Length = 209

 Score =  325 bits (833), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 148/208 (71%), Positives = 182/208 (87%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  +  + LVPMVVEQTNRGER+YDI+SRLLKERI+FV G +ED M+ L+CAQLLFLEA
Sbjct: 2   RDPIETVMNLVPMVVEQTNRGERAYDIFSRLLKERIIFVNGPVEDGMSMLVCAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI++YINSPGGVVT+GMAIYDTMQFI+PP+ST CMGQAASMGSLLL+AG  G R+
Sbjct: 62  ENPKKEINMYINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGATGHRY 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           ALPNARI++HQPSGGF GQASDIERHAQDI+K+KRRLNEIYVK+ G+ Y+ +E TLDRDH
Sbjct: 122 ALPNARIMVHQPSGGFQGQASDIERHAQDIIKMKRRLNEIYVKHTGRDYDTIECTLDRDH 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIEEKSK 216
            M+A EA ++G++DKV+ +R    ++SK
Sbjct: 182 FMTAQEALEFGLIDKVVEARDVSADESK 209


>gi|239977100|sp|P0CAU1|CLPP_CAUCR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|239977114|sp|B8GX16|CLPP_CAUCN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
          Length = 209

 Score =  325 bits (833), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 149/199 (74%), Positives = 175/199 (87%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           D     + LVPMVVEQT+RGER++DI+SRLLKERI+F+TG +ED MA+LICAQLLFLE+E
Sbjct: 3   DPVSTAMNLVPMVVEQTSRGERAFDIFSRLLKERIIFLTGPVEDGMASLICAQLLFLESE 62

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP+KEI++YINSPGGVVTAG+AIYDTMQ+IK P+ST CMG AASMGSLLL+AG  G R +
Sbjct: 63  NPKKEIAMYINSPGGVVTAGLAIYDTMQYIKSPVSTVCMGMAASMGSLLLAAGAAGQRIS 122

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPNARI++HQPSGGF GQASDIERHA+DI+K KRRLNEIYVK+CG+TYEEVE+TLDRDH 
Sbjct: 123 LPNARIMVHQPSGGFRGQASDIERHAEDIIKTKRRLNEIYVKHCGRTYEEVERTLDRDHF 182

Query: 190 MSASEACDWGVVDKVLMSR 208
           MSA EA  WG+VD V  SR
Sbjct: 183 MSADEAKAWGLVDHVYDSR 201


>gi|121602655|ref|YP_988860.1| ATP-dependent Clp protease proteolytic subunit [Bartonella
           bacilliformis KC583]
 gi|166201800|sp|A1USA7|CLPP_BARBK RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|120614832|gb|ABM45433.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bartonella
           bacilliformis KC583]
          Length = 210

 Score =  325 bits (833), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 148/201 (73%), Positives = 177/201 (88%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           L LVPMVVEQTNRGER+YDI+SRLLKERI+F+ G +ED MA L+CAQLLFLEAENP+KEI
Sbjct: 9   LSLVPMVVEQTNRGERAYDIFSRLLKERIIFINGPVEDSMAMLVCAQLLFLEAENPKKEI 68

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGGVVT+GMAIYDTMQFI+PPIST CMGQAASMGSLLL+AG KG RF+LPNARI
Sbjct: 69  SLYINSPGGVVTSGMAIYDTMQFIRPPISTLCMGQAASMGSLLLTAGAKGHRFSLPNARI 128

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGGF GQASDIERHAQDI+++KR LNEIYV++ G+ YE +E TLDRDH M+A EA
Sbjct: 129 MVHQPSGGFQGQASDIERHAQDIIRMKRHLNEIYVQHTGQDYEIIENTLDRDHFMTAEEA 188

Query: 196 CDWGVVDKVLMSRIDIEEKSK 216
             +G++D V+  R + +++ K
Sbjct: 189 KMFGLIDDVIQYRAETKKEEK 209


>gi|295689638|ref|YP_003593331.1| endopeptidase Clp [Caulobacter segnis ATCC 21756]
 gi|295431541|gb|ADG10713.1| Endopeptidase Clp [Caulobacter segnis ATCC 21756]
          Length = 210

 Score =  325 bits (832), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 149/199 (74%), Positives = 175/199 (87%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           D     + LVPMVVEQT+RGER++DI+SRLLKERI+F+TG +ED MA+LICAQLLFLE+E
Sbjct: 4   DPVSTAMNLVPMVVEQTSRGERAFDIFSRLLKERIIFLTGPVEDGMASLICAQLLFLESE 63

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP+KEI++YINSPGGVVTAG+AIYDTMQ+IK P+ST CMG AASMGSLLL+AG  G R +
Sbjct: 64  NPKKEIAMYINSPGGVVTAGLAIYDTMQYIKSPVSTVCMGMAASMGSLLLAAGAAGQRIS 123

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPNARI++HQPSGGF GQASDIERHA+DI+K KRRLNEIYVK+CG+TYEEVE+TLDRDH 
Sbjct: 124 LPNARIMVHQPSGGFRGQASDIERHAEDIIKTKRRLNEIYVKHCGRTYEEVERTLDRDHF 183

Query: 190 MSASEACDWGVVDKVLMSR 208
           MSA EA  WG+VD V  SR
Sbjct: 184 MSADEAKAWGLVDHVYDSR 202


>gi|16126206|ref|NP_420770.1| ATP-dependent Clp protease, proteolytic subunit [Caulobacter
           crescentus CB15]
 gi|3688205|emb|CAA09090.1| endopeptidase clp [Caulobacter crescentus CB15]
 gi|13423424|gb|AAK23938.1| ATP-dependent Clp protease, proteolytic subunit [Caulobacter
           crescentus CB15]
          Length = 210

 Score =  325 bits (832), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 149/199 (74%), Positives = 175/199 (87%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           D     + LVPMVVEQT+RGER++DI+SRLLKERI+F+TG +ED MA+LICAQLLFLE+E
Sbjct: 4   DPVSTAMNLVPMVVEQTSRGERAFDIFSRLLKERIIFLTGPVEDGMASLICAQLLFLESE 63

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP+KEI++YINSPGGVVTAG+AIYDTMQ+IK P+ST CMG AASMGSLLL+AG  G R +
Sbjct: 64  NPKKEIAMYINSPGGVVTAGLAIYDTMQYIKSPVSTVCMGMAASMGSLLLAAGAAGQRIS 123

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPNARI++HQPSGGF GQASDIERHA+DI+K KRRLNEIYVK+CG+TYEEVE+TLDRDH 
Sbjct: 124 LPNARIMVHQPSGGFRGQASDIERHAEDIIKTKRRLNEIYVKHCGRTYEEVERTLDRDHF 183

Query: 190 MSASEACDWGVVDKVLMSR 208
           MSA EA  WG+VD V  SR
Sbjct: 184 MSADEAKAWGLVDHVYDSR 202


>gi|221234978|ref|YP_002517414.1| ATP-dependent Clp protease proteolytic subunit [Caulobacter
           crescentus NA1000]
 gi|220964150|gb|ACL95506.1| ATP-dependent endopeptidase clp, proteolytic subunit ClpP
           [Caulobacter crescentus NA1000]
          Length = 213

 Score =  324 bits (831), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 149/199 (74%), Positives = 175/199 (87%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           D     + LVPMVVEQT+RGER++DI+SRLLKERI+F+TG +ED MA+LICAQLLFLE+E
Sbjct: 7   DPVSTAMNLVPMVVEQTSRGERAFDIFSRLLKERIIFLTGPVEDGMASLICAQLLFLESE 66

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP+KEI++YINSPGGVVTAG+AIYDTMQ+IK P+ST CMG AASMGSLLL+AG  G R +
Sbjct: 67  NPKKEIAMYINSPGGVVTAGLAIYDTMQYIKSPVSTVCMGMAASMGSLLLAAGAAGQRIS 126

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPNARI++HQPSGGF GQASDIERHA+DI+K KRRLNEIYVK+CG+TYEEVE+TLDRDH 
Sbjct: 127 LPNARIMVHQPSGGFRGQASDIERHAEDIIKTKRRLNEIYVKHCGRTYEEVERTLDRDHF 186

Query: 190 MSASEACDWGVVDKVLMSR 208
           MSA EA  WG+VD V  SR
Sbjct: 187 MSADEAKAWGLVDHVYDSR 205


>gi|319408364|emb|CBI82017.1| ATP-dependent Clp protease, proteolytic subunit [Bartonella
           schoenbuchensis R1]
          Length = 210

 Score =  324 bits (831), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 147/199 (73%), Positives = 177/199 (88%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           L LVPMVVEQTNRGER+YDI+SRLLKERI+F+ G +ED MA L+CAQLLFLEAENP+KEI
Sbjct: 9   LNLVPMVVEQTNRGERAYDIFSRLLKERIIFINGPVEDGMAMLVCAQLLFLEAENPKKEI 68

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGGVVT+GMAIYDTMQFI+PP+ST CMGQAASMGSLLL+AG KG RF+LPNARI
Sbjct: 69  SLYINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGAKGHRFSLPNARI 128

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGGF GQ SDIERHAQDI+K+K+RLNEIYV++ G+ YE +EKTLDRDH M+A E+
Sbjct: 129 MVHQPSGGFQGQVSDIERHAQDIIKMKQRLNEIYVQHTGQDYEIIEKTLDRDHFMTAEES 188

Query: 196 CDWGVVDKVLMSRIDIEEK 214
            ++G++D V+  R   E++
Sbjct: 189 KNFGLIDDVIQYRTVTEKE 207


>gi|161511142|ref|NP_539791.2| ATP-dependent Clp protease proteolytic subunit [Brucella melitensis
           bv. 1 str. 16M]
 gi|225852610|ref|YP_002732843.1| ATP-dependent Clp protease proteolytic subunit [Brucella melitensis
           ATCC 23457]
 gi|256044767|ref|ZP_05447671.1| ATP-dependent Clp protease proteolytic subunit [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|256113666|ref|ZP_05454477.1| ATP-dependent Clp protease proteolytic subunit [Brucella melitensis
           bv. 3 str. Ether]
 gi|256263897|ref|ZP_05466429.1| ATP-dependent Clp protease proteolytic subunit [Brucella melitensis
           bv. 2 str. 63/9]
 gi|260565631|ref|ZP_05836115.1| ATP-dependent Clp protease proteolytic subunit [Brucella melitensis
           bv. 1 str. 16M]
 gi|265991190|ref|ZP_06103747.1| ATP-dependent Clp protease proteolytic subunit [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|265995026|ref|ZP_06107583.1| ATP-dependent Clp protease proteolytic subunit [Brucella melitensis
           bv. 3 str. Ether]
 gi|21759068|sp|Q8YHC8|CLPP_BRUME RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|254763784|sp|C0RJ81|CLPP_BRUMB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|225640975|gb|ACO00889.1| ATP-dependent Clp protease proteolytic subunit [Brucella melitensis
           ATCC 23457]
 gi|260151699|gb|EEW86793.1| ATP-dependent Clp protease proteolytic subunit [Brucella melitensis
           bv. 1 str. 16M]
 gi|262766139|gb|EEZ11928.1| ATP-dependent Clp protease proteolytic subunit [Brucella melitensis
           bv. 3 str. Ether]
 gi|263001974|gb|EEZ14549.1| ATP-dependent Clp protease proteolytic subunit [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|263094029|gb|EEZ17963.1| ATP-dependent Clp protease proteolytic subunit [Brucella melitensis
           bv. 2 str. 63/9]
 gi|326409129|gb|ADZ66194.1| ATP-dependent Clp protease proteolytic subunit [Brucella melitensis
           M28]
 gi|326538837|gb|ADZ87052.1| ATP-dependent Clp protease proteolytic subunit [Brucella melitensis
           M5-90]
          Length = 209

 Score =  324 bits (831), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 147/208 (70%), Positives = 182/208 (87%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  +  + LVPMVVEQTNRGER+YDI+SRLLKERI+FV G +ED M+ L+CAQLLFLEA
Sbjct: 2   RDPIETVMNLVPMVVEQTNRGERAYDIFSRLLKERIIFVNGPVEDGMSMLVCAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI++YINSPGGVVT+GMAIYDTMQFI+PP+ST CMGQAASMGSLLL+AG  G R+
Sbjct: 62  ENPKKEINMYINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGATGHRY 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           AL NARI++HQPSGGF GQASDIERHAQDI+K+KRRLNEIYVK+ G+ Y+ +E+TLDRDH
Sbjct: 122 ALLNARIMVHQPSGGFQGQASDIERHAQDIIKMKRRLNEIYVKHTGRDYDTIERTLDRDH 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIEEKSK 216
            M+A EA ++G++DKV+ +R    ++SK
Sbjct: 182 FMTAQEALEFGLIDKVVEARDVSADESK 209


>gi|167646810|ref|YP_001684473.1| ATP-dependent Clp protease proteolytic subunit [Caulobacter sp.
           K31]
 gi|189082451|sp|B0SZQ2|CLPP_CAUSK RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|167349240|gb|ABZ71975.1| Endopeptidase Clp [Caulobacter sp. K31]
          Length = 208

 Score =  324 bits (831), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 149/200 (74%), Positives = 177/200 (88%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT+RGER++DI+SRLLKERI+F+TG +ED MA+LICAQLLFLE+ENP+KEI
Sbjct: 9   MNLVPMVVEQTSRGERAFDIFSRLLKERIIFLTGPVEDGMASLICAQLLFLESENPKKEI 68

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           ++YINSPGGVVTAG+AIYDTMQ+IK P+ST CMG AASMGSLLL AG  G R ALPNARI
Sbjct: 69  AMYINSPGGVVTAGLAIYDTMQYIKSPVSTVCMGMAASMGSLLLQAGAPGHRIALPNARI 128

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGGF GQASDIERHA+DI+K KRRLNEIYVK+ G+TYEEVEKTLDRDH MSA EA
Sbjct: 129 MVHQPSGGFRGQASDIERHAEDIIKTKRRLNEIYVKHTGRTYEEVEKTLDRDHFMSAEEA 188

Query: 196 CDWGVVDKVLMSRIDIEEKS 215
             WG++D +  SR + +EK+
Sbjct: 189 KAWGLIDHINESRDEADEKA 208


>gi|17982823|gb|AAL52055.1| ATP-dependent clp protease proteolytic subunit [Brucella melitensis
           bv. 1 str. 16M]
          Length = 247

 Score =  323 bits (828), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 147/208 (70%), Positives = 182/208 (87%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  +  + LVPMVVEQTNRGER+YDI+SRLLKERI+FV G +ED M+ L+CAQLLFLEA
Sbjct: 40  RDPIETVMNLVPMVVEQTNRGERAYDIFSRLLKERIIFVNGPVEDGMSMLVCAQLLFLEA 99

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI++YINSPGGVVT+GMAIYDTMQFI+PP+ST CMGQAASMGSLLL+AG  G R+
Sbjct: 100 ENPKKEINMYINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGATGHRY 159

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           AL NARI++HQPSGGF GQASDIERHAQDI+K+KRRLNEIYVK+ G+ Y+ +E+TLDRDH
Sbjct: 160 ALLNARIMVHQPSGGFQGQASDIERHAQDIIKMKRRLNEIYVKHTGRDYDTIERTLDRDH 219

Query: 189 IMSASEACDWGVVDKVLMSRIDIEEKSK 216
            M+A EA ++G++DKV+ +R    ++SK
Sbjct: 220 FMTAQEALEFGLIDKVVEARDVSADESK 247


>gi|218678052|ref|ZP_03525949.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli CIAT
           894]
          Length = 176

 Score =  322 bits (825), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 146/175 (83%), Positives = 165/175 (94%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQTNRGERSYDIYSRLLKERI+F+TG +EDHMATL+CAQLLFLEAENP+KEI
Sbjct: 1   MALVPMVVEQTNRGERSYDIYSRLLKERIIFLTGAVEDHMATLVCAQLLFLEAENPKKEI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGGVVTAGMAIYDTMQFIKP +ST C+GQAASMGSLLL+AG K MRFA PN+RI
Sbjct: 61  ALYINSPGGVVTAGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLAAGHKDMRFATPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           ++HQPSGGF GQASDIERHA+DI+K+KRRLNE+YVK+ G+TYEEVEKTLDRDH M
Sbjct: 121 MVHQPSGGFQGQASDIERHARDILKMKRRLNEVYVKHTGRTYEEVEKTLDRDHFM 175


>gi|300023469|ref|YP_003756080.1| endopeptidase Clp [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525290|gb|ADJ23759.1| Endopeptidase Clp [Hyphomicrobium denitrificans ATCC 51888]
          Length = 217

 Score =  321 bits (823), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 146/193 (75%), Positives = 174/193 (90%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           PMVVEQT RGER YD+ SRLLKERI+FVTG +EDHMA  IC QLLFLE+ENP+KEIS+YI
Sbjct: 14  PMVVEQTTRGERGYDLPSRLLKERIIFVTGPVEDHMAASICMQLLFLESENPKKEISMYI 73

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGGVVTAGMAIYDTMQF+KPP++T C+GQAASMGSLLL AG K MRFALPNARI++HQ
Sbjct: 74  NSPGGVVTAGMAIYDTMQFVKPPVATLCIGQAASMGSLLLCAGAKDMRFALPNARIMVHQ 133

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           PSGGFSGQASDIERHA+DI+K+KRRLNE YVK+ G++YE +EKTLDRD+ M+A +A D+G
Sbjct: 134 PSGGFSGQASDIERHAEDIIKMKRRLNETYVKHTGQSYEMIEKTLDRDYFMTADQARDFG 193

Query: 200 VVDKVLMSRIDIE 212
           ++DKVL SR +++
Sbjct: 194 IIDKVLESRDEVD 206


>gi|114569888|ref|YP_756568.1| ATP-dependent Clp protease proteolytic subunit ClpP [Maricaulis
           maris MCS10]
 gi|122316141|sp|Q0AQ07|CLPP_MARMM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|114340350|gb|ABI65630.1| ATP-dependent Clp protease proteolytic subunit ClpP [Maricaulis
           maris MCS10]
          Length = 211

 Score =  320 bits (821), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 147/205 (71%), Positives = 179/205 (87%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           D +DV + LVP+VVEQT+RGERS+DIYSRLLKERI+F+TG IEDHMA+LI AQLLFLE+E
Sbjct: 3   DPQDVMMNLVPIVVEQTSRGERSFDIYSRLLKERIIFITGPIEDHMASLIIAQLLFLESE 62

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP+KEIS+YINSPGGVV+AG+ IYDTMQ+I+ P+ST C+G AASMGSLLL+AGEK MRFA
Sbjct: 63  NPKKEISMYINSPGGVVSAGLGIYDTMQYIRSPVSTMCLGMAASMGSLLLTAGEKDMRFA 122

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
            PNARI++HQPSGGF GQASDIERHA DI KIKRRLNEIYV + G+TY+E+E  LDRD+ 
Sbjct: 123 APNARIMVHQPSGGFRGQASDIERHAADIQKIKRRLNEIYVHHTGRTYDEIESALDRDNF 182

Query: 190 MSASEACDWGVVDKVLMSRIDIEEK 214
           MSA E  ++G+VDKV+  R + E++
Sbjct: 183 MSAQEGLEFGLVDKVIERRAEDEKE 207


>gi|304391391|ref|ZP_07373333.1| Clp protease [Ahrensia sp. R2A130]
 gi|303295620|gb|EFL89978.1| Clp protease [Ahrensia sp. R2A130]
          Length = 212

 Score =  318 bits (815), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 146/204 (71%), Positives = 176/204 (86%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D     + LVPMVVEQTNRGER+YDI+SRLLKERI+F+TG IED M+ L+CAQLLFLEA
Sbjct: 2   QDPIQTAMNLVPMVVEQTNRGERAYDIFSRLLKERIIFITGPIEDGMSVLVCAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEISLYINSPGGVVTAGMAIYDTMQFIKPP++T CMGQA SMGSLLL+AGEK MRF
Sbjct: 62  ENPKKEISLYINSPGGVVTAGMAIYDTMQFIKPPVATLCMGQACSMGSLLLTAGEKDMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
            LP AR++LHQPSGG  G+ SDIER+  DI+K+K+RLN+IYVK+ G+  E +E+TLDRDH
Sbjct: 122 ILPQARVMLHQPSGGMQGKVSDIERNYTDIIKVKQRLNDIYVKHTGQDLETIERTLDRDH 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIE 212
            M+A E+ ++GVVDKV+ SR +IE
Sbjct: 182 FMNAEESVEFGVVDKVIASRDEIE 205


>gi|312113123|ref|YP_004010719.1| endopeptidase Clp [Rhodomicrobium vannielii ATCC 17100]
 gi|311218252|gb|ADP69620.1| Endopeptidase Clp [Rhodomicrobium vannielii ATCC 17100]
          Length = 214

 Score =  315 bits (806), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 141/196 (71%), Positives = 175/196 (89%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQTNRGER++DIYSRLLKERI+F+TG +ED+MA+L+ AQLLFLE+ENP+KEI++
Sbjct: 12  LVPMVVEQTNRGERAFDIYSRLLKERIIFLTGVVEDNMASLVIAQLLFLESENPKKEINI 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VT+G+A+YDTMQFI+PP+ST C+GQAASMGSLLL+AGE GMR+ALPNAR+++
Sbjct: 72  YINSPGGHVTSGLAMYDTMQFIRPPVSTLCVGQAASMGSLLLAAGEPGMRWALPNARVMV 131

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPS GF GQASDIERHA+DI+K KRRLNEIYVK+ G+ YE +E+TLDRDH MS  +A  
Sbjct: 132 HQPSAGFQGQASDIERHAEDILKTKRRLNEIYVKHTGQPYEVIERTLDRDHFMSPEQAKA 191

Query: 198 WGVVDKVLMSRIDIEE 213
           +G++D+VL  R   EE
Sbjct: 192 FGIIDEVLTKRAAAEE 207


>gi|209885039|ref|YP_002288896.1| Clp protease [Oligotropha carboxidovorans OM5]
 gi|226706464|sp|B6JGU7|CLPP_OLICO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|209873235|gb|ACI93031.1| Clp protease [Oligotropha carboxidovorans OM5]
          Length = 210

 Score =  312 bits (799), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 139/200 (69%), Positives = 177/200 (88%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  + ++ LVPMVVEQTNRGER+YDI+SRLLKERI+FVTG +ED M+TLI AQLLFLEA
Sbjct: 2   RDPVETYMNLVPMVVEQTNRGERAYDIFSRLLKERIIFVTGPVEDGMSTLIVAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEIS+YINSPGGVVT+G+AIYDTMQFI+PP+ST C GQAASMGSLLL+AGEK MRF
Sbjct: 62  ENPKKEISMYINSPGGVVTSGLAIYDTMQFIRPPVSTLCTGQAASMGSLLLAAGEKDMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPN+RI++HQPSGGF GQA+DI  HAQ+I+ +K+RLNEIYVK+ G++Y+ +E  L+RD+
Sbjct: 122 SLPNSRIMVHQPSGGFQGQATDIMLHAQEILNLKKRLNEIYVKHTGQSYQAIEDALERDN 181

Query: 189 IMSASEACDWGVVDKVLMSR 208
            ++A +A D+G+VDKV+  R
Sbjct: 182 FLTAEKARDFGIVDKVIDKR 201


>gi|296446284|ref|ZP_06888230.1| Endopeptidase Clp [Methylosinus trichosporium OB3b]
 gi|296256185|gb|EFH03266.1| Endopeptidase Clp [Methylosinus trichosporium OB3b]
          Length = 211

 Score =  311 bits (796), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 140/199 (70%), Positives = 176/199 (88%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P V+E T+RGER +DIYSRLL+ERI+F+TGQ+EDHMA++I AQLLFLEAENP++EI L
Sbjct: 12  LIPQVIENTSRGERGFDIYSRLLRERIIFLTGQVEDHMASVIIAQLLFLEAENPKREIFL 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G+AIYDTMQ+I+P ++T C+GQAASMGSLLL AGE G RFALPNARI++
Sbjct: 72  YINSPGGVVTSGLAIYDTMQYIRPKVATLCIGQAASMGSLLLCAGEAGQRFALPNARIMV 131

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGGF GQASDI RHA+DI+KIK+RLNEIYV++ G+ YE +EKTLDRDH MSA EA D
Sbjct: 132 HQPSGGFQGQASDILRHAEDIMKIKKRLNEIYVRHTGRDYETIEKTLDRDHFMSAEEAKD 191

Query: 198 WGVVDKVLMSRIDIEEKSK 216
           +G+VD V ++R + + ++K
Sbjct: 192 FGIVDHVQVNRPEEQSETK 210


>gi|307942062|ref|ZP_07657413.1| Clp protease [Roseibium sp. TrichSKD4]
 gi|307774348|gb|EFO33558.1| Clp protease [Roseibium sp. TrichSKD4]
          Length = 211

 Score =  311 bits (796), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 140/209 (66%), Positives = 181/209 (86%), Gaps = 1/209 (0%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           KD  D+++  LVPMVVEQTNRGERS+DIYSRLLKERI+F+TG IEDH+ATL+CAQLLFLE
Sbjct: 2   KDPADIYMNTLVPMVVEQTNRGERSFDIYSRLLKERIIFLTGPIEDHVATLVCAQLLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           A+NP KEI++YINSPGG+VT+G+AIYDTMQFI+P +ST C+GQAASMGSLLL+ GEK MR
Sbjct: 62  ADNPSKEIAIYINSPGGLVTSGLAIYDTMQFIRPAVSTLCIGQAASMGSLLLAGGEKDMR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           F+LPNAR+++HQPSGGF GQA+DI  HAQ+I+ +KRRLNEIYVK+ G++ +EVE+ L+RD
Sbjct: 122 FSLPNARVMVHQPSGGFRGQAADIMLHAQEILAMKRRLNEIYVKHTGQSLDEVEEALERD 181

Query: 188 HIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           + M+A +A ++G+VD V+  R  +   S+
Sbjct: 182 NFMTAEKAKEFGIVDSVITDRASLHSDSE 210


>gi|27380055|ref|NP_771584.1| ATP-dependent Clp protease proteolytic subunit [Bradyrhizobium
           japonicum USDA 110]
 gi|67460543|sp|Q89KG1|CLPP2_BRAJA RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|27353209|dbj|BAC50209.1| ATP-dependent Clp protease proteolytic subunit [Bradyrhizobium
           japonicum USDA 110]
          Length = 211

 Score =  310 bits (794), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 137/200 (68%), Positives = 177/200 (88%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  + ++ LVPMVVEQTNRGER+YDI+SRLLKERI+F+TG +ED M+TL+ AQLLFLEA
Sbjct: 2   RDPVETYMNLVPMVVEQTNRGERAYDIFSRLLKERIIFLTGPVEDGMSTLVVAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEIS+YINSPGGVVT+G+AIYDTMQFI+PP+ST C GQAASMGSLLL+AGEK MRF
Sbjct: 62  ENPKKEISMYINSPGGVVTSGLAIYDTMQFIRPPVSTLCTGQAASMGSLLLAAGEKDMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPNARI++HQPSGGF GQA+DI  HAQ+I+ +K+RLNEIYVK+ G+TY+ +E  L+RD 
Sbjct: 122 SLPNARIMVHQPSGGFQGQATDIMLHAQEILNLKKRLNEIYVKHTGQTYKTIEDALERDK 181

Query: 189 IMSASEACDWGVVDKVLMSR 208
            ++A++A ++G+VD+V+  R
Sbjct: 182 FLTANDAKEFGLVDRVIDKR 201


>gi|323139086|ref|ZP_08074144.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylocystis
           sp. ATCC 49242]
 gi|322395650|gb|EFX98193.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylocystis
           sp. ATCC 49242]
          Length = 210

 Score =  310 bits (793), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 139/199 (69%), Positives = 174/199 (87%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P V+E T+RGER +DIYSRLL+ERI+FVTG IEDHMA++I AQLLFLE+ENP+KEISL
Sbjct: 12  LIPQVIENTSRGERGFDIYSRLLRERIIFVTGPIEDHMASVIIAQLLFLESENPKKEISL 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G+AIYDTMQFIKP +ST C+GQAASMGSLLL AG  G+R+ALPNAR++L
Sbjct: 72  YINSPGGVVTSGLAIYDTMQFIKPKVSTLCVGQAASMGSLLLCAGADGLRYALPNARVML 131

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGGF GQASDI+RHA+DI+K+K+RLN+IYV++ GK Y+ +E+TLDRDH MSA EA  
Sbjct: 132 HQPSGGFQGQASDIQRHAEDILKVKKRLNDIYVRHTGKDYDTIERTLDRDHFMSAEEAKS 191

Query: 198 WGVVDKVLMSRIDIEEKSK 216
           +G++D V   R + E ++K
Sbjct: 192 FGIIDSVQEKRAEDETEAK 210


>gi|217979044|ref|YP_002363191.1| Endopeptidase Clp [Methylocella silvestris BL2]
 gi|217504420|gb|ACK51829.1| Endopeptidase Clp [Methylocella silvestris BL2]
          Length = 215

 Score =  309 bits (792), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 139/193 (72%), Positives = 171/193 (88%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P V+E T+RGER +DIYSRLL+ERI+F+TG +EDHMA++I AQLLFLEAENP+KEIS+
Sbjct: 14  LIPQVIENTSRGERGFDIYSRLLRERIIFLTGPVEDHMASVIIAQLLFLEAENPKKEISM 73

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVTAG+AIYDTMQFI+P +ST C+GQAASMGSLLL AGE G RFALPNARI++
Sbjct: 74  YINSPGGVVTAGLAIYDTMQFIRPKVSTLCVGQAASMGSLLLCAGEAGQRFALPNARIMV 133

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGGF GQASDI RHA+DI+K+KRRLN+IYVK+ G+ Y+ +EKTLDRDH MS+ +A +
Sbjct: 134 HQPSGGFQGQASDILRHAEDIMKVKRRLNDIYVKHTGRDYDTIEKTLDRDHFMSSDDARE 193

Query: 198 WGVVDKVLMSRID 210
           +G+VD V+  R D
Sbjct: 194 FGIVDSVISQRPD 206


>gi|118590047|ref|ZP_01547451.1| ATP-dependent Clp protease proteolytic subunit [Stappia aggregata
           IAM 12614]
 gi|118437544|gb|EAV44181.1| ATP-dependent Clp protease proteolytic subunit [Stappia aggregata
           IAM 12614]
          Length = 211

 Score =  309 bits (792), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 138/201 (68%), Positives = 179/201 (89%), Gaps = 1/201 (0%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           KD  D+++  LVPMVVEQTNRGER++DIYSRLLKERI+F+TG +EDHMATL+ AQLL+LE
Sbjct: 2   KDPVDIYMNTLVPMVVEQTNRGERAFDIYSRLLKERIIFLTGPVEDHMATLVSAQLLYLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AENP KEI++YINSPGG+VT+G+AIYDTMQFI+P +ST C+GQAASMGSLLL+AGEKGMR
Sbjct: 62  AENPSKEIAIYINSPGGLVTSGLAIYDTMQFIRPAVSTLCIGQAASMGSLLLAAGEKGMR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           + LPNAR+++HQPSGGF GQA+DI  HAQ+I+ +KRRLN+IYVK+ G+T ++VE+ L+RD
Sbjct: 122 YILPNARVMVHQPSGGFRGQAADIMLHAQEILAMKRRLNDIYVKHTGRTLDQVEEALERD 181

Query: 188 HIMSASEACDWGVVDKVLMSR 208
           + M+A +A ++G+VDKV+  R
Sbjct: 182 NFMTAEKAKEFGIVDKVITDR 202


>gi|299135043|ref|ZP_07028234.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Afipia sp.
           1NLS2]
 gi|298590020|gb|EFI50224.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Afipia sp.
           1NLS2]
          Length = 210

 Score =  309 bits (791), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 137/200 (68%), Positives = 176/200 (88%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  + ++ LVPMVVEQTNRGER+YDI+SRLLKERI+F+TG +ED M+TL+ AQLLFLEA
Sbjct: 2   RDPVETYMNLVPMVVEQTNRGERAYDIFSRLLKERIIFLTGPVEDGMSTLVVAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEIS+YINSPGGVVT+G+AIYDTMQFI+PP+ST C GQAASMGSLLL+AGEK MRF
Sbjct: 62  ENPKKEISMYINSPGGVVTSGLAIYDTMQFIRPPVSTLCTGQAASMGSLLLAAGEKDMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPN+RI++HQPSGGF GQA+DI  HAQ+I+ +K+RLNEIYVK+ G+ Y+ +E  L+RD+
Sbjct: 122 SLPNSRIMVHQPSGGFQGQATDIMLHAQEILNLKKRLNEIYVKHTGQDYKTIEDALERDN 181

Query: 189 IMSASEACDWGVVDKVLMSR 208
            ++A +A D+G+VDKV+  R
Sbjct: 182 FLTADKAKDFGIVDKVIDKR 201


>gi|182679147|ref|YP_001833293.1| endopeptidase Clp [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182635030|gb|ACB95804.1| Endopeptidase Clp [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 217

 Score =  308 bits (790), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 138/193 (71%), Positives = 171/193 (88%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P V+E T+RGER +DIYSRLL+ERI+F+TGQ+ED+MA++I AQLLFLEAENP+KEIS+
Sbjct: 16  LIPQVIENTSRGERGFDIYSRLLRERIIFLTGQVEDNMASVIIAQLLFLEAENPKKEISM 75

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVTAG+AIYDTMQFI+P +ST C+GQAASMGSLLL AGE GMR+A PN+RI++
Sbjct: 76  YINSPGGVVTAGLAIYDTMQFIRPKVSTLCVGQAASMGSLLLCAGEAGMRYATPNSRIMV 135

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGGFSGQASDI RHA+DI+K+KRRLNEIYVK+ G+ Y+ +E TLDRDH MSA E  +
Sbjct: 136 HQPSGGFSGQASDILRHAEDIMKVKRRLNEIYVKHTGRDYDTIETTLDRDHFMSAQETKE 195

Query: 198 WGVVDKVLMSRID 210
           +G++D V+  R D
Sbjct: 196 FGIIDNVIDKRPD 208


>gi|75676090|ref|YP_318511.1| peptidase S14, ClpP [Nitrobacter winogradskyi Nb-255]
 gi|90101410|sp|Q3SRD2|CLPP_NITWN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|74420960|gb|ABA05159.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nitrobacter
           winogradskyi Nb-255]
          Length = 212

 Score =  308 bits (789), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 138/200 (69%), Positives = 174/200 (87%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  + ++ LVPMVVEQTNRGER+YDI+SRLLKERI+FVTG +ED+M+ L+ AQLLFLEA
Sbjct: 2   RDPVETYMNLVPMVVEQTNRGERAYDIFSRLLKERIIFVTGGVEDNMSMLVVAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEIS+YINSPGGVVT+G+AIYDTMQFI+PP++T C GQAASMGSLLL+AGEK MR 
Sbjct: 62  ENPKKEISMYINSPGGVVTSGLAIYDTMQFIRPPVATLCTGQAASMGSLLLAAGEKDMRH 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           ALPNARI++HQPSGGF GQA+DI  HAQ+I+ +K+RLNEIYVK+ G+TY+ +E  L+RD 
Sbjct: 122 ALPNARIMVHQPSGGFQGQATDIMLHAQEILSLKKRLNEIYVKHTGQTYQAIEDALERDK 181

Query: 189 IMSASEACDWGVVDKVLMSR 208
            ++A  A D+G+VDKV+  R
Sbjct: 182 FLTADMARDFGIVDKVIDKR 201


>gi|85716433|ref|ZP_01047405.1| peptidase S14, ClpP [Nitrobacter sp. Nb-311A]
 gi|85696790|gb|EAQ34676.1| peptidase S14, ClpP [Nitrobacter sp. Nb-311A]
          Length = 212

 Score =  308 bits (789), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 138/200 (69%), Positives = 173/200 (86%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  + ++ LVPMVVEQTNRGER+YDI+SRLLKERI+FVTG +ED M+ L+ AQLLFLEA
Sbjct: 2   RDPVETYMNLVPMVVEQTNRGERAYDIFSRLLKERIIFVTGPVEDTMSMLVVAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEIS+YINSPGGVVT+G+AIYDTMQFI+PP++T C GQAASMGSLLL+AGEK MR 
Sbjct: 62  ENPKKEISMYINSPGGVVTSGLAIYDTMQFIRPPVATLCTGQAASMGSLLLAAGEKDMRH 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           ALPNARI++HQPSGGF GQA+DI  HAQ+I+ +K+RLNEIYVK+ G+TY+ +E  L+RD 
Sbjct: 122 ALPNARIMVHQPSGGFQGQATDIMLHAQEILSLKKRLNEIYVKHTGQTYQAIEDALERDK 181

Query: 189 IMSASEACDWGVVDKVLMSR 208
            ++A  A D+G+VDKV+  R
Sbjct: 182 FLTADMARDFGIVDKVIDKR 201


>gi|39936026|ref|NP_948302.1| endopeptidase Clp [Rhodopseudomonas palustris CGA009]
 gi|192291681|ref|YP_001992286.1| Endopeptidase Clp [Rhodopseudomonas palustris TIE-1]
 gi|67460293|sp|Q6N5L3|CLPP_RHOPA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706467|sp|B3Q7P5|CLPP_RHOPT RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|39649880|emb|CAE28402.1| ATP-dependent Clp protease proteolytic subunit [Rhodopseudomonas
           palustris CGA009]
 gi|192285430|gb|ACF01811.1| Endopeptidase Clp [Rhodopseudomonas palustris TIE-1]
          Length = 212

 Score =  307 bits (786), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 138/200 (69%), Positives = 173/200 (86%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  + ++ LVPMVVEQTNRGER+YDI+SRLLKERI+FVTG +ED M+TLI AQLLFLEA
Sbjct: 2   RDPVETYMNLVPMVVEQTNRGERAYDIFSRLLKERIIFVTGPVEDGMSTLIVAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEIS+YINSPGGVVT+G+AIYDTMQFI+PP+ST C GQAASMGSLLL+AG K MRF
Sbjct: 62  ENPKKEISMYINSPGGVVTSGLAIYDTMQFIRPPVSTLCTGQAASMGSLLLAAGHKDMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPNARI++HQPSGGF GQA+DI  HAQ+I+ +K+RLNEIYV + G+TY+ +E  L+RD 
Sbjct: 122 SLPNARIMVHQPSGGFQGQATDIMLHAQEILNLKKRLNEIYVHHTGQTYKAIEDALERDK 181

Query: 189 IMSASEACDWGVVDKVLMSR 208
            ++A  A ++G+VDKV+  R
Sbjct: 182 FLTAEMAREFGIVDKVIEKR 201


>gi|254469734|ref|ZP_05083139.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudovibrio
           sp. JE062]
 gi|211961569|gb|EEA96764.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudovibrio
           sp. JE062]
          Length = 211

 Score =  306 bits (785), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 138/191 (72%), Positives = 172/191 (90%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQTNRGER+YDI+SRLLKERI+F+TG +ED MATL+C+QLL+LEAENP KEI+L
Sbjct: 12  LVPMVVEQTNRGERAYDIFSRLLKERIIFLTGPVEDTMATLVCSQLLYLEAENPNKEIAL 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G+AIYDTMQFI+P IST C+GQAASMGSLLL+AGEKGMRF+LPN+R+++
Sbjct: 72  YINSPGGVVTSGLAIYDTMQFIRPKISTLCIGQAASMGSLLLAAGEKGMRFSLPNSRVMV 131

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGGF GQA+DI  HAQ+I+K+KRRLNEIYV + G+T E VE+ L+RD+ MSA  A +
Sbjct: 132 HQPSGGFRGQAADIMLHAQEILKLKRRLNEIYVSHTGQTLEAVEEALERDNFMSADAAKE 191

Query: 198 WGVVDKVLMSR 208
           +G++D V+ +R
Sbjct: 192 FGLIDNVIENR 202


>gi|92117752|ref|YP_577481.1| endopeptidase Clp [Nitrobacter hamburgensis X14]
 gi|116243151|sp|Q1QL76|CLPP_NITHX RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|91800646|gb|ABE63021.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nitrobacter
           hamburgensis X14]
          Length = 211

 Score =  306 bits (784), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 137/200 (68%), Positives = 174/200 (87%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  + ++ LVPMVVEQTNRGER+YDI+SRLLKERI+FVTG +ED+M+ L+ AQLLFLEA
Sbjct: 2   RDPVETYMNLVPMVVEQTNRGERAYDIFSRLLKERIIFVTGPVEDNMSMLVVAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           +NP+KEIS+YINSPGGVVT+G+AIYDTMQFI+PP++T C GQAASMGSLLL+AGEK MR 
Sbjct: 62  DNPKKEISMYINSPGGVVTSGLAIYDTMQFIRPPVATLCTGQAASMGSLLLAAGEKDMRH 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           ALPNARI++HQPSGGF GQA+DI  HAQ+I+ +K+RLNEIYVK+ G+TY+ +E  L+RD 
Sbjct: 122 ALPNARIMVHQPSGGFQGQATDIMLHAQEILNLKKRLNEIYVKHTGQTYKAIEDALERDK 181

Query: 189 IMSASEACDWGVVDKVLMSR 208
            ++A  A D+G+VDKV+  R
Sbjct: 182 FLTADMARDFGLVDKVIDKR 201


>gi|86749681|ref|YP_486177.1| endopeptidase Clp [Rhodopseudomonas palustris HaA2]
 gi|116243157|sp|Q2IWZ4|CLPP_RHOP2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|86572709|gb|ABD07266.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Rhodopseudomonas palustris HaA2]
          Length = 212

 Score =  306 bits (784), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 137/200 (68%), Positives = 173/200 (86%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  + ++ LVPMVVEQTNRGER+YDI+SRLLKERI+F+TG +ED M+TL+ AQLLFLEA
Sbjct: 2   RDPVETYMNLVPMVVEQTNRGERAYDIFSRLLKERIIFLTGPVEDGMSTLVVAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEIS+YINSPGGVVT+G+AIYDTMQFI+PP+ST C GQAASMGSLLL+AG K MRF
Sbjct: 62  ENPKKEISMYINSPGGVVTSGLAIYDTMQFIRPPVSTLCTGQAASMGSLLLAAGHKDMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPNARI++HQPSGGF GQA+DI  HAQ+I+ +K+RLNEIYV + G+TY+ +E  L+RD 
Sbjct: 122 SLPNARIMVHQPSGGFQGQATDIMLHAQEILNLKKRLNEIYVHHTGQTYKAIEDALERDK 181

Query: 189 IMSASEACDWGVVDKVLMSR 208
            ++A  A D+G+VDKV+  R
Sbjct: 182 FLTADMARDFGIVDKVIDKR 201


>gi|316933821|ref|YP_004108803.1| endopeptidase Clp [Rhodopseudomonas palustris DX-1]
 gi|315601535|gb|ADU44070.1| Endopeptidase Clp [Rhodopseudomonas palustris DX-1]
          Length = 212

 Score =  306 bits (784), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 138/200 (69%), Positives = 173/200 (86%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  + ++ LVPMVVEQTNRGER+YDI+SRLLKERI+FVTG +ED M+TLI AQLLFLEA
Sbjct: 2   RDPVETYMNLVPMVVEQTNRGERAYDIFSRLLKERIIFVTGPVEDGMSTLIVAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEIS+YINSPGGVVT+G+AIYDTMQFI+PP+ST C GQAASMGSLLL+AG K MRF
Sbjct: 62  ENPKKEISMYINSPGGVVTSGLAIYDTMQFIRPPVSTLCTGQAASMGSLLLAAGHKDMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPNARI++HQPSGGF GQA+DI  HAQ+I+ +K+RLNEIYV + G+TY+ +E  L+RD 
Sbjct: 122 SLPNARIMVHQPSGGFQGQATDIMLHAQEILNLKKRLNEIYVHHTGQTYKAIEDALERDK 181

Query: 189 IMSASEACDWGVVDKVLMSR 208
            ++A  A ++G+VDKV+  R
Sbjct: 182 FLTAEMAREFGIVDKVIDKR 201


>gi|255002920|ref|ZP_05277884.1| ATP-dependent Clp protease proteolytic subunit [Anaplasma marginale
           str. Puerto Rico]
 gi|255004048|ref|ZP_05278849.1| ATP-dependent Clp protease proteolytic subunit [Anaplasma marginale
           str. Virginia]
          Length = 198

 Score =  306 bits (783), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 137/193 (70%), Positives = 175/193 (90%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT+RGER+YDIYSRLLKERI+F+TG +ED+MA+LI AQL+FLEAENP+K+I
Sbjct: 1   MNLVPMVVEQTSRGERAYDIYSRLLKERIIFITGTVEDNMASLIVAQLVFLEAENPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGGVVTAG++IYDTMQ+IKP +ST C+GQAASMG+LLL+ GE GMR+ALPN+RI
Sbjct: 61  SLYINSPGGVVTAGLSIYDTMQYIKPKVSTLCLGQAASMGALLLAGGEPGMRYALPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGGF GQA+DIE HA++I++IKRRLNEIYVK+ GK+ EE+E +++RD+ M A +A
Sbjct: 121 MVHQPSGGFRGQATDIEIHAREILEIKRRLNEIYVKHTGKSLEEIESSMERDNFMVAEKA 180

Query: 196 CDWGVVDKVLMSR 208
            D+G+VDKV+  R
Sbjct: 181 KDFGIVDKVIDKR 193


>gi|115524517|ref|YP_781428.1| endopeptidase Clp [Rhodopseudomonas palustris BisA53]
 gi|122296222|sp|Q07NN6|CLPP_RHOP5 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|115518464|gb|ABJ06448.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Rhodopseudomonas palustris BisA53]
          Length = 211

 Score =  306 bits (783), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 138/200 (69%), Positives = 173/200 (86%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  + ++ LVPMVVEQTNRGER+YDI+SRLLKERI+F+TG +ED M+TL+ AQLLFLEA
Sbjct: 2   RDPVETYMNLVPMVVEQTNRGERAYDIFSRLLKERIIFLTGPVEDGMSTLVVAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEIS+YINSPGGVVT+G+AIYDTMQFI+PP+ST C GQAASMGSLLL AG K MRF
Sbjct: 62  ENPKKEISMYINSPGGVVTSGLAIYDTMQFIRPPVSTLCTGQAASMGSLLLCAGAKDMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPNARI++HQPSGGF GQA+DI  HAQ+I+ +K+RLNEIYVK+ G+TY+ +E  L+RD 
Sbjct: 122 SLPNARIMVHQPSGGFQGQATDIMLHAQEILNLKKRLNEIYVKHTGQTYKAIEDALERDK 181

Query: 189 IMSASEACDWGVVDKVLMSR 208
            ++A  A D+G+VDKV+  R
Sbjct: 182 FLTADMARDFGLVDKVIDKR 201


>gi|90423893|ref|YP_532263.1| endopeptidase Clp [Rhodopseudomonas palustris BisB18]
 gi|116243159|sp|Q215J2|CLPP_RHOPB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|90105907|gb|ABD87944.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Rhodopseudomonas palustris BisB18]
          Length = 210

 Score =  305 bits (781), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 137/200 (68%), Positives = 172/200 (86%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  + ++ LVPMVVEQTNRGER+YDI+SRLLKERI+FVTG +ED M+TL  AQLLFLEA
Sbjct: 2   RDPVETYMNLVPMVVEQTNRGERAYDIFSRLLKERIIFVTGPVEDGMSTLTVAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEIS+YINSPGGVVT+G+AIYDTMQFI+PP+ST C GQAASMGSLLL+AG   MRF
Sbjct: 62  ENPKKEISMYINSPGGVVTSGLAIYDTMQFIRPPVSTLCTGQAASMGSLLLAAGHPDMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPN+RI++HQPSGGF GQA+DI  HAQ+I+ +K+RLNEIYVK+ G+TY+ +E  L+RD 
Sbjct: 122 SLPNSRIMVHQPSGGFQGQATDIMLHAQEILNLKKRLNEIYVKHTGQTYKAIEDALERDK 181

Query: 189 IMSASEACDWGVVDKVLMSR 208
            ++A  A D+G+VDKV+  R
Sbjct: 182 FLTADMARDFGIVDKVIDKR 201


>gi|298292194|ref|YP_003694133.1| ATP-dependent Clp protease proteolytic subunit ClpP [Starkeya
           novella DSM 506]
 gi|296928705|gb|ADH89514.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Starkeya
           novella DSM 506]
          Length = 210

 Score =  305 bits (781), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 141/203 (69%), Positives = 174/203 (85%), Gaps = 1/203 (0%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           +D  D ++  LVPMVVEQTNRGERSYDIYSRLLKERI+F+TG +ED+MATL+ AQLLFLE
Sbjct: 2   RDPIDTYMNYLVPMVVEQTNRGERSYDIYSRLLKERIIFLTGPVEDNMATLMVAQLLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AENP+KEIS+YINSPGGVVT+G+AIYDTMQFIKP +ST C+GQAASMGSLLL+AGEKGMR
Sbjct: 62  AENPKKEISMYINSPGGVVTSGLAIYDTMQFIKPAVSTLCIGQAASMGSLLLTAGEKGMR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           FALPNARI++HQPSGGF GQ +DI  HAQ+I+ +K+RLNEIYVK+ G+  + VE  L+RD
Sbjct: 122 FALPNARIMVHQPSGGFQGQVTDIMLHAQEILSLKKRLNEIYVKHTGQDLKAVEDALERD 181

Query: 188 HIMSASEACDWGVVDKVLMSRID 210
           + M++  A  +G++D V+  R D
Sbjct: 182 NFMTSDNAKSFGLIDNVIDKRPD 204


>gi|254994793|ref|ZP_05276983.1| ATP-dependent Clp protease proteolytic subunit [Anaplasma marginale
           str. Mississippi]
          Length = 207

 Score =  305 bits (781), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 137/194 (70%), Positives = 175/194 (90%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
            + LVPMVVEQT+RGER+YDIYSRLLKERI+F+TG +ED+MA+LI AQL+FLEAENP+K+
Sbjct: 9   IMNLVPMVVEQTSRGERAYDIYSRLLKERIIFITGTVEDNMASLIVAQLVFLEAENPEKD 68

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           ISLYINSPGGVVTAG++IYDTMQ+IKP +ST C+GQAASMG+LLL+ GE GMR+ALPN+R
Sbjct: 69  ISLYINSPGGVVTAGLSIYDTMQYIKPKVSTLCLGQAASMGALLLAGGEPGMRYALPNSR 128

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQPSGGF GQA+DIE HA++I++IKRRLNEIYVK+ GK+ EE+E +++RD+ M A +
Sbjct: 129 IMVHQPSGGFRGQATDIEIHAREILEIKRRLNEIYVKHTGKSLEEIESSMERDNFMVAEK 188

Query: 195 ACDWGVVDKVLMSR 208
           A D+G+VDKV+  R
Sbjct: 189 AKDFGIVDKVIDKR 202


>gi|91977364|ref|YP_570023.1| endopeptidase Clp [Rhodopseudomonas palustris BisB5]
 gi|123721781|sp|Q135W7|CLPP_RHOPS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|91683820|gb|ABE40122.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Rhodopseudomonas palustris BisB5]
          Length = 214

 Score =  305 bits (781), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 136/200 (68%), Positives = 173/200 (86%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  + ++ LVPMVVEQTNRGER+YDI+SRLLKERI+F+TG +ED M+TL+ AQLLFLEA
Sbjct: 2   RDPVETYMNLVPMVVEQTNRGERAYDIFSRLLKERIIFLTGPVEDGMSTLVVAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEIS+YINSPGGVVT+G+AIYDTMQFI+PP+ST C GQAASMGSLLL+AG K MRF
Sbjct: 62  ENPKKEISMYINSPGGVVTSGLAIYDTMQFIRPPVSTLCTGQAASMGSLLLAAGHKDMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPNARI++HQPSGGF GQA+DI  HAQ+I+ +K+RLNEIYV + G+TY+ +E  L+RD 
Sbjct: 122 SLPNARIMVHQPSGGFQGQATDIMLHAQEILNLKKRLNEIYVHHTGQTYKAIEDALERDK 181

Query: 189 IMSASEACDWGVVDKVLMSR 208
            ++A  A ++G+VDKV+  R
Sbjct: 182 FLTAEMAREFGIVDKVIDKR 201


>gi|254504144|ref|ZP_05116295.1| Clp protease [Labrenzia alexandrii DFL-11]
 gi|222440215|gb|EEE46894.1| Clp protease [Labrenzia alexandrii DFL-11]
          Length = 213

 Score =  305 bits (781), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 139/211 (65%), Positives = 182/211 (86%), Gaps = 3/211 (1%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           KD  D+++  LVPMVVEQTNRGER++DIYSRLLKERI+F+TG +EDHMATL+ AQLL+LE
Sbjct: 2   KDPVDIYMNTLVPMVVEQTNRGERAFDIYSRLLKERIIFLTGPVEDHMATLVSAQLLYLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           A+NP KEI++YINSPGG+VT+G+AIYDTMQFI+P +ST C+GQAASMGSLLL+AGEK MR
Sbjct: 62  ADNPSKEIAIYINSPGGLVTSGLAIYDTMQFIRPSVSTLCIGQAASMGSLLLAAGEKDMR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           F LPNAR+++HQPSGGF GQA+DI  HAQ+I+ +KRRLNEIYVK+ G++ ++VE+ L+RD
Sbjct: 122 FILPNARVMVHQPSGGFRGQAADIMLHAQEILAMKRRLNEIYVKHTGRSLDQVEEALERD 181

Query: 188 HIMSASEACDWGVVDKVLMSRIDI--EEKSK 216
           + M+A +A ++G+VD V+  R  +  E +SK
Sbjct: 182 NFMTAEKAKEFGIVDSVITDRTSLGGENESK 212


>gi|56416580|ref|YP_153654.1| ATP-dependent Clp protease proteolytic subunit [Anaplasma marginale
           str. St. Maries]
 gi|222474947|ref|YP_002563362.1| ATP-dependent clp protease proteolytic subunit (clpP) [Anaplasma
           marginale str. Florida]
 gi|67460191|sp|Q5PBD0|CLPP_ANAMM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|254763783|sp|B9KHZ4|CLPP_ANAMF RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|56387812|gb|AAV86399.1| ATP-dependent clp protease proteolytic subunit [Anaplasma marginale
           str. St. Maries]
 gi|222419083|gb|ACM49106.1| ATP-dependent clp protease proteolytic subunit (clpP) [Anaplasma
           marginale str. Florida]
          Length = 215

 Score =  305 bits (780), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 138/197 (70%), Positives = 176/197 (89%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E   + LVPMVVEQT+RGER+YDIYSRLLKERI+F+TG +ED+MA+LI AQL+FLEAENP
Sbjct: 14  EREIMNLVPMVVEQTSRGERAYDIYSRLLKERIIFITGTVEDNMASLIVAQLVFLEAENP 73

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+ISLYINSPGGVVTAG++IYDTMQ+IKP +ST C+GQAASMG+LLL+ GE GMR+ALP
Sbjct: 74  EKDISLYINSPGGVVTAGLSIYDTMQYIKPKVSTLCLGQAASMGALLLAGGEPGMRYALP 133

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+RI++HQPSGGF GQA+DIE HA++I++IKRRLNEIYVK+ GK+ EE+E +++RD+ M 
Sbjct: 134 NSRIMVHQPSGGFRGQATDIEIHAREILEIKRRLNEIYVKHTGKSLEEIESSMERDNFMV 193

Query: 192 ASEACDWGVVDKVLMSR 208
           A +A D+G+VDKV+  R
Sbjct: 194 AEKAKDFGIVDKVIDKR 210


>gi|269959005|ref|YP_003328794.1| ATP-dependent Clp protease proteolytic subunit [Anaplasma centrale
           str. Israel]
 gi|269848836|gb|ACZ49480.1| ATP-dependent Clp protease proteolytic subunit [Anaplasma centrale
           str. Israel]
          Length = 215

 Score =  305 bits (780), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 137/194 (70%), Positives = 175/194 (90%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
            + LVPMVVEQT+RGER+YDIYSRLLKERI+F+TG +ED+MA+LI AQL+FLEAENP+K+
Sbjct: 17  IMNLVPMVVEQTSRGERAYDIYSRLLKERIIFITGTVEDNMASLIVAQLVFLEAENPEKD 76

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           ISLYINSPGGVVTAG++IYDTMQ+IKP +ST C+GQAASMG+LLL+ GE GMR+ALPN+R
Sbjct: 77  ISLYINSPGGVVTAGLSIYDTMQYIKPKVSTLCLGQAASMGALLLAGGEPGMRYALPNSR 136

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQPSGGF GQA+DIE HA++I++IKRRLNEIYVK+ GK+ EE+E +++RD+ M A +
Sbjct: 137 IMVHQPSGGFRGQATDIEIHAREILEIKRRLNEIYVKHTGKSLEEIESSMERDNFMVAEK 196

Query: 195 ACDWGVVDKVLMSR 208
           A D+G+VDKV+  R
Sbjct: 197 AKDFGIVDKVIDKR 210


>gi|114771109|ref|ZP_01448549.1| Protease subunit of ATP-dependent Clp protease [alpha
           proteobacterium HTCC2255]
 gi|114548391|gb|EAU51277.1| Protease subunit of ATP-dependent Clp protease [alpha
           proteobacterium HTCC2255]
          Length = 204

 Score =  305 bits (780), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 138/193 (71%), Positives = 171/193 (88%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQT+RGERS+DI+SRLLKERI+FV+G + D M+TLI AQLLFLEAENP+K+IS+
Sbjct: 12  LVPMVVEQTSRGERSFDIFSRLLKERIIFVSGPVHDGMSTLIVAQLLFLEAENPKKDISM 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVTAGMAIYDTMQ+I+P +ST C+GQAASMGSLLL+AGEKGMRFALPNAR+++
Sbjct: 72  YINSPGGVVTAGMAIYDTMQYIRPKVSTLCVGQAASMGSLLLAAGEKGMRFALPNARVMV 131

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGGFSGQASDI  HA++I+++K RLN+IYVK+C +    VE  LDRD+ M+A EA D
Sbjct: 132 HQPSGGFSGQASDIALHAKEILELKDRLNKIYVKHCSQKLSTVEDALDRDNFMTAEEAKD 191

Query: 198 WGVVDKVLMSRID 210
           WG++D+++  R D
Sbjct: 192 WGLIDEIVQKRED 204


>gi|328543681|ref|YP_004303790.1| ATP-dependent Clp protease proteolytic subunit [Polymorphum gilvum
           SL003B-26A1]
 gi|326413425|gb|ADZ70488.1| ATP-dependent Clp protease proteolytic subunit [Polymorphum gilvum
           SL003B-26A1]
          Length = 211

 Score =  304 bits (778), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 138/201 (68%), Positives = 176/201 (87%), Gaps = 1/201 (0%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           KD  ++F   LVPMVVEQTNRGER++DIYSRLLKERI+F+TG IED +ATL+CAQLL+LE
Sbjct: 2   KDPVELFTNTLVPMVVEQTNRGERAFDIYSRLLKERIIFLTGPIEDQLATLVCAQLLYLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AENP KEI+LYINSPGG+VT+G+AIYDTMQFI+P +ST C+GQAASMGSLLL+AG+KGMR
Sbjct: 62  AENPNKEIALYINSPGGLVTSGLAIYDTMQFIRPEVSTLCIGQAASMGSLLLAAGQKGMR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           F+LPNAR+++HQPSGGF GQA+DI  HAQ+I+K+KRRLN+IYVK+ G++ + VE+ L+RD
Sbjct: 122 FSLPNARVMVHQPSGGFRGQAADIMLHAQEILKLKRRLNDIYVKHTGQSLDSVEEALERD 181

Query: 188 HIMSASEACDWGVVDKVLMSR 208
           + M+A  A  +G+VD V+  R
Sbjct: 182 NFMTADMAKGFGIVDSVISDR 202


>gi|83858431|ref|ZP_00951953.1| ATP-dependent Clp protease, proteolytic subunit [Oceanicaulis
           alexandrii HTCC2633]
 gi|83853254|gb|EAP91106.1| ATP-dependent Clp protease, proteolytic subunit [Oceanicaulis
           alexandrii HTCC2633]
          Length = 207

 Score =  303 bits (776), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 140/200 (70%), Positives = 171/200 (85%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           ++ +DV + LVPMVVEQ+ RGER+YDIYSRLLKERIVFVTG IEDHMA+L+ AQLLFLE+
Sbjct: 2   REPQDVMMNLVPMVVEQSARGERAYDIYSRLLKERIVFVTGPIEDHMASLMVAQLLFLES 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP KEI++YINSPGG V+AG+AIYDTMQ+I  P++T C+G AASMGSLLL+AG+KGMRF
Sbjct: 62  ENPNKEIAMYINSPGGSVSAGLAIYDTMQYISCPVATACVGMAASMGSLLLTAGDKGMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           A PNARI+LHQPSGGF G  +DIERH +DI+KIKRR+NEIYVK+ G+  E+VEKTLDRD 
Sbjct: 122 ATPNARIMLHQPSGGFRGTTADIERHGEDILKIKRRMNEIYVKHTGQPLEKVEKTLDRDF 181

Query: 189 IMSASEACDWGVVDKVLMSR 208
            M A EA ++G++D V   R
Sbjct: 182 YMDAMEAKEFGLIDHVYEKR 201


>gi|73666834|ref|YP_302850.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ehrlichia
           canis str. Jake]
 gi|108935919|sp|Q3YSQ3|CLPP_EHRCJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|72393975|gb|AAZ68252.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ehrlichia
           canis str. Jake]
          Length = 200

 Score =  302 bits (774), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 137/200 (68%), Positives = 174/200 (87%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT+RGER+YDIYSRLLKERI+F+TG IED MA+L+ AQL+FLEAENP+KEI
Sbjct: 1   MTLVPMVVEQTSRGERAYDIYSRLLKERIIFITGPIEDQMASLVVAQLVFLEAENPEKEI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG++IYDTMQ+IKP +ST C+GQAASMGSLLL+AGE GMR+ALPN+RI
Sbjct: 61  CMYINSPGGVVTAGLSIYDTMQYIKPKVSTLCLGQAASMGSLLLAAGEPGMRYALPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGGF GQA+DIE HA++I+ IK RLN+IYVK+ G+   EV   ++RD+ M A +A
Sbjct: 121 MIHQPSGGFQGQATDIEIHAKEILDIKSRLNDIYVKHTGRDLPEVVANMERDNFMRAEKA 180

Query: 196 CDWGVVDKVLMSRIDIEEKS 215
            D+G++DKV+  R+DIEE +
Sbjct: 181 KDFGIIDKVIEKRLDIEESN 200


>gi|154247518|ref|YP_001418476.1| endopeptidase Clp [Xanthobacter autotrophicus Py2]
 gi|226706559|sp|A7ILC6|CLPP_XANP2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|154161603|gb|ABS68819.1| Endopeptidase Clp [Xanthobacter autotrophicus Py2]
          Length = 211

 Score =  302 bits (773), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 137/201 (68%), Positives = 173/201 (86%), Gaps = 1/201 (0%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           +D  D ++  L+PMVVEQTNRGERSYDI+SRLLKERI+F+TG +ED M+TL  AQLLFLE
Sbjct: 2   RDPVDTYMNYLIPMVVEQTNRGERSYDIFSRLLKERIIFLTGPVEDGMSTLAVAQLLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           A+NP+KEIS+YINSPGGVVT+G+AIYDTMQFIKP +ST C+GQAASMGSLLL+AGEK MR
Sbjct: 62  ADNPKKEISMYINSPGGVVTSGLAIYDTMQFIKPAVSTLCIGQAASMGSLLLTAGEKDMR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           FALPNARI++HQPSGGF GQ +DI  HAQ+I+ +KRRLNEIYVK+ G++ +++E  L+RD
Sbjct: 122 FALPNARIMVHQPSGGFQGQVTDIMLHAQEILNLKRRLNEIYVKHTGRSMDKIEDALERD 181

Query: 188 HIMSASEACDWGVVDKVLMSR 208
           + M+A  A D+G++D V+  R
Sbjct: 182 NFMTAKAALDFGLIDAVIDQR 202


>gi|329890026|ref|ZP_08268369.1| clp protease family protein [Brevundimonas diminuta ATCC 11568]
 gi|328845327|gb|EGF94891.1| clp protease family protein [Brevundimonas diminuta ATCC 11568]
          Length = 213

 Score =  302 bits (773), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 137/196 (69%), Positives = 167/196 (85%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQ++RGERS+DI+SRLL+ERI+F+TG  ED MA+LICAQLLFLE+ENP+KEIS+
Sbjct: 12  LVPMVVEQSSRGERSFDIFSRLLRERIIFLTGPFEDGMASLICAQLLFLESENPKKEISM 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VT+ +AIYDTMQ+IK P+ST  MG AAS GSL+L+AGE G R ALPNAR+++
Sbjct: 72  YINSPGGQVTSALAIYDTMQYIKSPVSTVVMGMAASAGSLILTAGEAGQRIALPNARVMV 131

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGGF G ASDIERHA+DI+  KRRLNEIYV++ G+TYEEVE+TLDRDH M+A EA  
Sbjct: 132 HQPSGGFRGTASDIERHAEDIIATKRRLNEIYVQHTGRTYEEVERTLDRDHFMTAEEAKA 191

Query: 198 WGVVDKVLMSRIDIEE 213
           WG+VD V   R   ++
Sbjct: 192 WGIVDHVYDKRTQADD 207


>gi|197105280|ref|YP_002130657.1| ATP-dependent Clp protease, proteolytic subunit [Phenylobacterium
           zucineum HLK1]
 gi|196478700|gb|ACG78228.1| ATP-dependent Clp protease, proteolytic subunit [Phenylobacterium
           zucineum HLK1]
          Length = 205

 Score =  301 bits (772), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 139/200 (69%), Positives = 168/200 (84%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D     LGLVPMVVEQT+RGER+YDI+SRLLK+RIVF+ G +ED MA+LICAQLL LEA
Sbjct: 2   RDPVTTALGLVPMVVEQTSRGERAYDIFSRLLKDRIVFLAGPVEDGMASLICAQLLHLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI +YINSPGGVVT+G+AIYDTMQ+IK P+ T C+G AASMGS LL AGEKG R 
Sbjct: 62  ENPKKEIQMYINSPGGVVTSGLAIYDTMQYIKSPVITLCLGMAASMGSFLLMAGEKGQRI 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           ALPN+RI++HQPSGG+SG+A+DI+RHA+DI+K KRRLNEIY K+ G+  E VE+TLDRD 
Sbjct: 122 ALPNSRIMVHQPSGGYSGKATDIQRHAEDIIKTKRRLNEIYAKHTGQPIEAVEETLDRDF 181

Query: 189 IMSASEACDWGVVDKVLMSR 208
            M+A EA DWG+VD V   R
Sbjct: 182 FMTAQEAKDWGLVDHVWEKR 201


>gi|148255923|ref|YP_001240508.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bradyrhizobium
           sp. BTAi1]
 gi|166201801|sp|A5EKA8|CLPP_BRASB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|146408096|gb|ABQ36602.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bradyrhizobium
           sp. BTAi1]
          Length = 210

 Score =  301 bits (771), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 135/200 (67%), Positives = 172/200 (86%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  + ++ LVPMVVEQTNRGER+YDI+SRLLKERI+FVTG +ED MATLI AQLLFLEA
Sbjct: 2   RDPVETYMNLVPMVVEQTNRGERAYDIFSRLLKERIIFVTGPVEDGMATLIVAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI++YINSPGGVVT+G+AIYDTMQFI+P +ST C GQAASMGSLLL AG K MRF
Sbjct: 62  ENPKKEIAMYINSPGGVVTSGLAIYDTMQFIRPAVSTLCTGQAASMGSLLLCAGHKDMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPN+RI++HQPSGGF GQA+DI  HAQ+I+ +K+RLNEIYVK+ G++Y+ +E  L+RD 
Sbjct: 122 SLPNSRIMVHQPSGGFQGQATDIMLHAQEILSLKKRLNEIYVKHTGQSYKAIEDALERDK 181

Query: 189 IMSASEACDWGVVDKVLMSR 208
            ++A  A ++G++DKV+  R
Sbjct: 182 FLTAEAAAEFGLIDKVIDKR 201


>gi|57238933|ref|YP_180069.1| ATP-dependent Clp protease proteolytic subunit [Ehrlichia
           ruminantium str. Welgevonden]
 gi|58578866|ref|YP_197078.1| ATP-dependent Clp protease proteolytic subunit [Ehrlichia
           ruminantium str. Welgevonden]
 gi|67460160|sp|Q5HBX5|CLPP_EHRRW RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|57161012|emb|CAH57918.1| ATP-dependent Clp protease proteolytic subunit [Ehrlichia
           ruminantium str. Welgevonden]
 gi|58417492|emb|CAI26696.1| ATP-dependent CLP protease proteolytic subunit [Ehrlichia
           ruminantium str. Welgevonden]
          Length = 198

 Score =  300 bits (769), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 136/197 (69%), Positives = 173/197 (87%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT+RGER+YDIYSRLLKERI+F+TG IED MA+L+ AQL+FLEAENP+K+I
Sbjct: 1   MTLVPMVVEQTSRGERAYDIYSRLLKERIIFITGPIEDQMASLVVAQLIFLEAENPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGGVVTAG++IYDTMQ++KP I+T C+GQAASMGSLLL+AGEKGMR ALPN+RI
Sbjct: 61  SMYINSPGGVVTAGLSIYDTMQYVKPRIATLCLGQAASMGSLLLAAGEKGMRCALPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGGF GQA+DIE HA++I+ IK RLN IYVK+ G+   EV  +++RD+ MSA  A
Sbjct: 121 MIHQPSGGFQGQATDIEIHAKEILNIKSRLNYIYVKHTGRELSEVVASMERDNFMSADSA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
            D+G++DKV+  R+DI+
Sbjct: 181 QDFGIIDKVIEKRLDID 197


>gi|158423232|ref|YP_001524524.1| ATP-dependent Clp protease proteolytic subunit [Azorhizobium
           caulinodans ORS 571]
 gi|172047856|sp|A8HYF2|CLPP_AZOC5 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|158330121|dbj|BAF87606.1| ATP-dependent Clp protease proteolytic subunit [Azorhizobium
           caulinodans ORS 571]
          Length = 210

 Score =  300 bits (769), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 137/201 (68%), Positives = 174/201 (86%), Gaps = 1/201 (0%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           +D  D ++  LVPMVVEQTNRGER+YDIYSRLLKERI+F+TG +ED M+TL  AQLLFLE
Sbjct: 2   RDPVDTYMNYLVPMVVEQTNRGERAYDIYSRLLKERIIFLTGPVEDGMSTLAVAQLLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AENP+KEIS+YINSPGGVVT+G+AIYDTMQFI+P +ST C+GQAASMGSLLL+AGEKG+R
Sbjct: 62  AENPKKEISMYINSPGGVVTSGLAIYDTMQFIRPAVSTLCIGQAASMGSLLLTAGEKGLR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           FALPNARI++HQPSGGF GQ +DI  HAQ+I+ +K+RLNEIYVK+ G+  E++E  L+RD
Sbjct: 122 FALPNARIMVHQPSGGFQGQVTDIMLHAQEILSLKKRLNEIYVKHTGQPIEKIEDALERD 181

Query: 188 HIMSASEACDWGVVDKVLMSR 208
           + M+A+ A ++G++D V+  R
Sbjct: 182 NFMTANAAQEFGLIDTVIDKR 202


>gi|146341127|ref|YP_001206175.1| ATP-dependent Clp protease proteolytic subunit [Bradyrhizobium sp.
           ORS278]
 gi|146193933|emb|CAL77950.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           [Bradyrhizobium sp. ORS278]
          Length = 210

 Score =  300 bits (768), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 136/200 (68%), Positives = 171/200 (85%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  + ++ LVPMVVEQTNRGER+YDI+SRLLKERI+FVTG +ED MATLI AQLLFLEA
Sbjct: 2   RDPVETYMNLVPMVVEQTNRGERAYDIFSRLLKERIIFVTGPVEDGMATLIVAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI++YINSPGGVVT+G+AIYDTMQFI+P +ST C GQAASMGSLLL AG K MRF
Sbjct: 62  ENPKKEIAMYINSPGGVVTSGLAIYDTMQFIRPAVSTLCTGQAASMGSLLLCAGHKDMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPN+RI++HQPSGGF GQA+DI  HAQ+I+ +K+RLNEIYVK+ G+ Y+ +E  L+RD 
Sbjct: 122 SLPNSRIMVHQPSGGFQGQATDIMLHAQEILSLKKRLNEIYVKHTGQPYKAIEDALERDK 181

Query: 189 IMSASEACDWGVVDKVLMSR 208
            ++A  A ++G++DKVL  R
Sbjct: 182 FLTAEAAQEFGLIDKVLDKR 201


>gi|304319808|ref|YP_003853451.1| Protease subunit of ATP-dependent Clp protease [Parvularcula
           bermudensis HTCC2503]
 gi|303298711|gb|ADM08310.1| Protease subunit of ATP-dependent Clp protease [Parvularcula
           bermudensis HTCC2503]
          Length = 210

 Score =  299 bits (766), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 132/201 (65%), Positives = 176/201 (87%), Gaps = 1/201 (0%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           +D  D+++  LVPMV+EQT+RGERS+DIYSRLLKERI+F++GQ+ D ++TLI AQLLFLE
Sbjct: 2   RDPHDIYMNTLVPMVIEQTSRGERSFDIYSRLLKERIIFLSGQVHDQVSTLIVAQLLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           A+NP+K+I+ YINSPGG VTAG+A+YDTM++I+P IST C+G AASMGSLLL+AG+KGMR
Sbjct: 62  ADNPKKDIAFYINSPGGSVTAGLAMYDTMRYIRPQISTMCVGLAASMGSLLLTAGDKGMR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           F+LPN+RI++HQPS GF GQASDIERHA+DI++ K+RLNEIYV++ G+ YE +E+TLDRD
Sbjct: 122 FSLPNSRIMVHQPSAGFQGQASDIERHARDIIQTKKRLNEIYVEHTGQDYETIERTLDRD 181

Query: 188 HIMSASEACDWGVVDKVLMSR 208
             M+  +A D+G++D+VL  R
Sbjct: 182 TFMTPEDALDFGLIDQVLEKR 202


>gi|58616924|ref|YP_196123.1| ATP-dependent Clp protease proteolytic subunit [Ehrlichia
           ruminantium str. Gardel]
 gi|67460150|sp|Q5FFG7|CLPP_EHRRG RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|58416536|emb|CAI27649.1| ATP-dependent CLP protease proteolytic subunit [Ehrlichia
           ruminantium str. Gardel]
          Length = 198

 Score =  298 bits (763), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 135/197 (68%), Positives = 172/197 (87%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVE T+RGER+YDIY+RLLKERI+F+TG IED MA+L+ AQL+FLEAENP+K+I
Sbjct: 1   MTLVPMVVEPTSRGERAYDIYTRLLKERIIFITGPIEDQMASLVVAQLIFLEAENPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGGVVTAG++IYDTMQ++KP I+T C+GQAASMGSLLL+AGEKGMR ALPN+RI
Sbjct: 61  SMYINSPGGVVTAGLSIYDTMQYVKPRIATLCLGQAASMGSLLLAAGEKGMRCALPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGGF GQA+DIE HA++I+ IK RLN IYVK+ G+   EV  +++RD+ MSA  A
Sbjct: 121 MIHQPSGGFQGQATDIEIHAKEILNIKSRLNYIYVKHTGRELSEVVASMERDNFMSADSA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
            D+G++DKV+  R+DIE
Sbjct: 181 QDFGIIDKVIEKRLDIE 197


>gi|88658316|ref|YP_507695.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ehrlichia
           chaffeensis str. Arkansas]
 gi|115311357|sp|Q2GFT8|CLPP_EHRCR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|88599773|gb|ABD45242.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ehrlichia
           chaffeensis str. Arkansas]
          Length = 199

 Score =  297 bits (761), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 135/196 (68%), Positives = 171/196 (87%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT+RGER+YDIYSRLLKERI+F+TG IED MA+LI AQL+FLE+ENP+KEI
Sbjct: 1   MTLVPMVVEQTSRGERAYDIYSRLLKERIIFITGPIEDQMASLIVAQLIFLESENPEKEI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG++IYDTMQ+IKP +ST C+GQAASMGSLLL+AGE GMR+ALPN+RI
Sbjct: 61  CMYINSPGGVVTAGLSIYDTMQYIKPKVSTLCLGQAASMGSLLLAAGEPGMRYALPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGGF GQA+DIE HA++I+ IK RLN+IYVK+ G+   EV   ++RD+ M A +A
Sbjct: 121 MIHQPSGGFQGQATDIEIHAKEILDIKGRLNDIYVKHTGRDLSEVVANMERDNFMRAEKA 180

Query: 196 CDWGVVDKVLMSRIDI 211
            D+G++DKV+  R+DI
Sbjct: 181 KDFGIIDKVIEKRLDI 196


>gi|154253670|ref|YP_001414494.1| endopeptidase Clp [Parvibaculum lavamentivorans DS-1]
 gi|154157620|gb|ABS64837.1| Endopeptidase Clp [Parvibaculum lavamentivorans DS-1]
          Length = 213

 Score =  297 bits (761), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 136/200 (68%), Positives = 168/200 (84%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           KD  + ++ LVPMVVEQTNRGER+YDI+SRLLKE I+FV G +ED MA L+ AQLLFLEA
Sbjct: 2   KDPIETYMNLVPMVVEQTNRGERAYDIFSRLLKEHIIFVAGPVEDGMAMLVTAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEIS+YINSPGGVVT+G+AIYDTMQ I+PP+ST CMGQAASMGSLLL+AGEKGMRF
Sbjct: 62  ENPKKEISMYINSPGGVVTSGLAIYDTMQHIRPPVSTVCMGQAASMGSLLLAAGEKGMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           ALPNARI++HQPSGGF GQASDIE HA++ + I+ RLN IY K+ G++ + VE  L+RD+
Sbjct: 122 ALPNARIMVHQPSGGFQGQASDIEIHARETIAIRERLNNIYCKHTGQSLKAVEDALERDN 181

Query: 189 IMSASEACDWGVVDKVLMSR 208
            MS   A ++G++D V + R
Sbjct: 182 FMSPERALEFGIIDHVGVDR 201


>gi|307129927|ref|YP_003881943.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Dickeya dadantii 3937]
 gi|306527456|gb|ADM97386.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Dickeya dadantii 3937]
          Length = 207

 Score =  297 bits (760), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 135/208 (64%), Positives = 172/208 (82%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  +K +    + LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 1   MSYSGEQEKQAPH--MALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GGF GQA+DIE HA++I+K+K R+NE+  K+ G+  E +
Sbjct: 119 AGTKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKEILKVKARMNELMAKHTGQPLEAI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA+EA D+G+VD VL  R
Sbjct: 179 ERDTERDRFLSAAEAVDYGLVDSVLTHR 206


>gi|88607298|ref|YP_505537.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Anaplasma
           phagocytophilum HZ]
 gi|115311354|sp|Q2GJB4|CLPP_ANAPZ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|88598361|gb|ABD43831.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Anaplasma
           phagocytophilum HZ]
          Length = 197

 Score =  296 bits (757), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 134/195 (68%), Positives = 173/195 (88%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT RGER+YDIYSRLLKERI+FVTG IED MA+LI AQL+FLEAE+P+K+I
Sbjct: 1   MNLVPMVVEQTGRGERAYDIYSRLLKERIIFVTGPIEDEMASLIVAQLVFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGGVVTAG++IYDTMQ+IKP ++T C+GQAASMGSLLL AG  GMR ALPN+R+
Sbjct: 61  SMYINSPGGVVTAGLSIYDTMQYIKPNVATLCLGQAASMGSLLLCAGAPGMRCALPNSRV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGGF GQA+DIE HA++I++IKRRLNEI+V++ GK+ EE+E +++RD+ M A +A
Sbjct: 121 MIHQPSGGFRGQATDIEIHAREILEIKRRLNEIFVRHTGKSLEEIESSMERDNFMIAEKA 180

Query: 196 CDWGVVDKVLMSRID 210
            D+G++DKV+  RI+
Sbjct: 181 RDFGIIDKVIEKRIE 195


>gi|300715591|ref|YP_003740394.1| ATP-dependent Clp protease proteolytic subunit [Erwinia billingiae
           Eb661]
 gi|299061427|emb|CAX58539.1| ATP-dependent Clp protease proteolytic subunit [Erwinia billingiae
           Eb661]
          Length = 215

 Score =  296 bits (757), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 133/208 (63%), Positives = 174/208 (83%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  +++     + LVPMVVEQT+RGERSYDI+SRLLKERI+F+TGQ+EDHMA LI 
Sbjct: 9   MSYSG--EREQTAPHMALVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDHMANLIV 66

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTM+FIKP +ST CMGQA SMG+ LL+
Sbjct: 67  AQMLFLEAENPEKDIHLYINSPGGVITAGMSIYDTMKFIKPDVSTICMGQACSMGAFLLT 126

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG R+ALPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+  ++ GKT EE+
Sbjct: 127 AGTKGKRYALPNSRVMIHQPLGGYQGQATDIEIHAREILKVKARMNELMAEHTGKTLEEI 186

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SASEA ++G+VD VL  R
Sbjct: 187 ERDTERDRFLSASEAVEYGLVDSVLTHR 214


>gi|114800297|ref|YP_760784.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Hyphomonas
           neptunium ATCC 15444]
 gi|114740471|gb|ABI78596.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Hyphomonas
           neptunium ATCC 15444]
          Length = 207

 Score =  295 bits (756), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 133/199 (66%), Positives = 176/199 (88%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           L LVPMVVEQT+RGER++DI+SRLLKERI+FVTG I+D +A+LI AQLLFLE+ENP++EI
Sbjct: 9   LNLVPMVVEQTSRGERAFDIFSRLLKERIIFVTGGIDDGIASLITAQLLFLESENPKREI 68

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           ++YINSPGG V++G+AIYDTMQ+++ PIST C+GQAASMGSLLL+AGEKG+R ALPNAR+
Sbjct: 69  AMYINSPGGYVSSGLAIYDTMQYVRCPISTVCIGQAASMGSLLLAAGEKGLRIALPNARV 128

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +LHQPSGG+SG A+DIERHA++I+++KRRLN+IYV++ G+ Y+ VE+ LDRD  ++A EA
Sbjct: 129 MLHQPSGGYSGVATDIERHAEEIIELKRRLNDIYVRHTGQEYDVVERKLDRDTFLTAEEA 188

Query: 196 CDWGVVDKVLMSRIDIEEK 214
            ++G+VDKV   R   +EK
Sbjct: 189 MEFGIVDKVYERRTAEDEK 207


>gi|254421111|ref|ZP_05034835.1| Clp protease [Brevundimonas sp. BAL3]
 gi|196187288|gb|EDX82264.1| Clp protease [Brevundimonas sp. BAL3]
          Length = 215

 Score =  295 bits (756), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 137/193 (70%), Positives = 162/193 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQ++RGERS+DI+SRLL+ERI+F+TG  ED MA+LICAQLLFLE+ENP+KEI
Sbjct: 10  MNLVPMVVEQSSRGERSFDIFSRLLRERIIFLTGPFEDTMASLICAQLLFLESENPKKEI 69

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGG V++ +AIYDTMQ+IK P+ST  MG AAS GSL+L+AG  G R ALPNARI
Sbjct: 70  SMYINSPGGQVSSALAIYDTMQYIKSPVSTVVMGMAASAGSLILTAGAAGQRIALPNARI 129

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGGF GQASDIE HA DI   K+RLNEIYV + G+TYEEVEKTLDRDH MSA EA
Sbjct: 130 MVHQPSGGFRGQASDIELHAADIRYTKKRLNEIYVHHTGRTYEEVEKTLDRDHFMSAEEA 189

Query: 196 CDWGVVDKVLMSR 208
             WG+VD V   R
Sbjct: 190 KAWGIVDHVYDKR 202


>gi|254294162|ref|YP_003060185.1| endopeptidase Clp [Hirschia baltica ATCC 49814]
 gi|254042693|gb|ACT59488.1| Endopeptidase Clp [Hirschia baltica ATCC 49814]
          Length = 206

 Score =  295 bits (756), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 133/199 (66%), Positives = 171/199 (85%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           D  +  + LVPMVVEQ++RGER+YDI+SRLLKERI+FVTG IED MATLI AQLLFLE+E
Sbjct: 3   DPIETAMNLVPMVVEQSSRGERAYDIFSRLLKERIIFVTGPIEDGMATLITAQLLFLESE 62

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP+KEIS+YINSPGGVV++G+AIYDTMQ+I  P+ST C+G AASMGSLLL+AGEK MRFA
Sbjct: 63  NPKKEISMYINSPGGVVSSGLAIYDTMQYISAPVSTACIGMAASMGSLLLAAGEKDMRFA 122

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
            PNARI++HQPSGG+ G ASDIERHA++I++IKR LN IYV + G++YE +E+ LDRD  
Sbjct: 123 TPNARIMVHQPSGGYRGVASDIERHAEEILEIKRNLNNIYVNHTGQSYEAIEQKLDRDSF 182

Query: 190 MSASEACDWGVVDKVLMSR 208
           M++++A ++G++D+V   R
Sbjct: 183 MTSAQAVEFGIIDRVFEKR 201


>gi|85058649|ref|YP_454351.1| ATP-dependent Clp protease proteolytic subunit [Sodalis
           glossinidius str. 'morsitans']
 gi|84779169|dbj|BAE73946.1| ATP-dependent Clp protease proteolytic subunit [Sodalis
           glossinidius str. 'morsitans']
          Length = 207

 Score =  295 bits (755), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 135/208 (64%), Positives = 173/208 (83%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D+    + LVPMVVEQT+RGERSYDI+SRLLKERI+F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--EQDNFAPHMALVPMVVEQTSRGERSYDIFSRLLKERIIFMTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ++FLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +STFCMGQAASMG+ LL+
Sbjct: 59  AQMMFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTFCMGQAASMGAFLLA 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GGF GQA+DIE HA++I+K+K R+NE+  K+ G+  E +
Sbjct: 119 AGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAREILKVKARMNELMAKHTGQPLEVI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA EA D+G+VD VL  R
Sbjct: 179 ERDTERDRFLSAPEAVDYGLVDSVLSQR 206


>gi|251790648|ref|YP_003005369.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dickeya zeae
           Ech1591]
 gi|247539269|gb|ACT07890.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dickeya zeae
           Ech1591]
          Length = 207

 Score =  295 bits (755), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 135/208 (64%), Positives = 172/208 (82%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  +K +    + LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 1   MSYSGEQEKLAPH--MALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GGF GQA+DIE HA++I+K+K R+NE+  K+ G+  E +
Sbjct: 119 AGTKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKEILKVKARMNELMAKHTGQPLEMI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA+EA D+G+VD VL  R
Sbjct: 179 ERDTERDRFLSAAEAVDYGLVDSVLTHR 206


>gi|89070383|ref|ZP_01157690.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Oceanicola
           granulosus HTCC2516]
 gi|89044030|gb|EAR50205.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Oceanicola
           granulosus HTCC2516]
          Length = 209

 Score =  294 bits (753), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 130/199 (65%), Positives = 171/199 (85%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           D  + ++ LVPMVVEQT+RGER+YDI+SRLLKERI+F+ G + D MA+LI AQL+ LEAE
Sbjct: 3   DPIETYMNLVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMASLIVAQLIHLEAE 62

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP+KEIS+YINSPGGVVT+G++IYDTMQ+IKPP+ST  +GQAASMGSLLL+ GEKGMR +
Sbjct: 63  NPKKEISMYINSPGGVVTSGLSIYDTMQYIKPPVSTLVIGQAASMGSLLLAGGEKGMRLS 122

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPN+RI++HQPSGG+ GQA+DI  HA++ +K+KRRLNEIYVK+ G+T ++VE  L+RD+ 
Sbjct: 123 LPNSRIMVHQPSGGYQGQATDIMIHAEETLKLKRRLNEIYVKHTGQTLKKVEAALERDNF 182

Query: 190 MSASEACDWGVVDKVLMSR 208
           MS  EA DWG++D++  +R
Sbjct: 183 MSPEEAKDWGLIDEIFENR 201


>gi|253990891|ref|YP_003042247.1| ATP-dependent Clp protease proteolytic subunit [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253782341|emb|CAQ85505.1| ATP-dependent proteolytic subunit of clpA-ClpP serine protease,
           heat shock protein F21.5 [Photorhabdus asymbiotica]
          Length = 207

 Score =  294 bits (752), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 133/201 (66%), Positives = 167/201 (83%)

Query: 8   KKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           K+D     + LVPMV+EQT RGERS+DIYSRLLKERI+F+TGQ+EDHMA LI AQ+LFLE
Sbjct: 6   KRDQYVPHMALVPMVIEQTARGERSFDIYSRLLKERIIFLTGQVEDHMANLIVAQMLFLE 65

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+AG +G R
Sbjct: 66  AENPEKDIFLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLTAGAEGKR 125

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           F LPN+R+++HQP GGF GQASDIE HAQ+I+K+K R+N +  K+ GK+ EE+EK  +RD
Sbjct: 126 FCLPNSRVMIHQPLGGFQGQASDIEIHAQEILKVKGRMNSLMAKHTGKSLEEIEKDTERD 185

Query: 188 HIMSASEACDWGVVDKVLMSR 208
             +SASEA ++G+VDK+   R
Sbjct: 186 RFLSASEAVEYGLVDKIFTHR 206


>gi|77463765|ref|YP_353269.1| ATP-dependent Clp protease proteolytic subunit [Rhodobacter
           sphaeroides 2.4.1]
 gi|126462595|ref|YP_001043709.1| ATP-dependent Clp protease proteolytic subunit [Rhodobacter
           sphaeroides ATCC 17029]
 gi|221639635|ref|YP_002525897.1| ATP-dependent Clp protease proteolytic subunit [Rhodobacter
           sphaeroides KD131]
 gi|124013827|sp|Q3J1G6|CLPP_RHOS4 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166214702|sp|A3PKS1|CLPP_RHOS1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|254763798|sp|B9KJU9|CLPP_RHOSK RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|77388183|gb|ABA79368.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rhodobacter
           sphaeroides 2.4.1]
 gi|126104259|gb|ABN76937.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rhodobacter
           sphaeroides ATCC 17029]
 gi|221160416|gb|ACM01396.1| ATP-dependent Clp protease proteolytic subunit [Rhodobacter
           sphaeroides KD131]
          Length = 210

 Score =  294 bits (752), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 133/209 (63%), Positives = 178/209 (85%), Gaps = 1/209 (0%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           KD  D+++  LVPMVVEQT+RGER+YDIYSR+LKERI+F++G + D M++LICAQLLFLE
Sbjct: 2   KDPIDLYMNTLVPMVVEQTSRGERAYDIYSRMLKERIIFLSGPVHDGMSSLICAQLLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AENP KEI++YINSPGGVVT+G++IYDTMQ+I+P +ST  +GQAASMGSLLL+AGEKGMR
Sbjct: 62  AENPSKEIAMYINSPGGVVTSGLSIYDTMQYIRPKVSTLVIGQAASMGSLLLTAGEKGMR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           F+LPN+R+++HQPSGG+ GQA+DI  HA++  K+KRRLNEIYV++ G+  E VE  L+RD
Sbjct: 122 FSLPNSRVMVHQPSGGYQGQATDIMIHARETEKLKRRLNEIYVRHTGQDLETVEAALERD 181

Query: 188 HIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           + MSA +A  WG++D++L SR   ++ +K
Sbjct: 182 NFMSAEDAKAWGLIDEILESRNRPDDTAK 210


>gi|302382854|ref|YP_003818677.1| endopeptidase Clp [Brevundimonas subvibrioides ATCC 15264]
 gi|302193482|gb|ADL01054.1| Endopeptidase Clp [Brevundimonas subvibrioides ATCC 15264]
          Length = 213

 Score =  293 bits (751), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 136/191 (71%), Positives = 160/191 (83%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQ++RGER++DI+SRLL+ERI+F+TG  ED MA+LICAQLLFLE+ENP+KEIS+
Sbjct: 12  LVPMVVEQSSRGERAFDIFSRLLRERIIFLTGPFEDGMASLICAQLLFLESENPKKEISM 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VT+ +AIYDTMQ+IK P+ST  MG AAS GSL+L+AG  G R ALPNARI++
Sbjct: 72  YINSPGGQVTSALAIYDTMQYIKSPVSTVVMGMAASAGSLILTAGAAGQRIALPNARIMV 131

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGGF GQASDIE HA DI   KRRLNEIYV + G+TYEEVEKTLDRDH M A  A +
Sbjct: 132 HQPSGGFRGQASDIELHAADIRYTKRRLNEIYVHHTGRTYEEVEKTLDRDHFMDAEAAKE 191

Query: 198 WGVVDKVLMSR 208
           WG+VD V   R
Sbjct: 192 WGIVDHVYDKR 202


>gi|110816466|sp|Q2NV79|CLPP_SODGM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
          Length = 194

 Score =  293 bits (750), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 131/193 (67%), Positives = 165/193 (85%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT+RGERSYDI+SRLLKERI+F+TGQ+EDHMA LI AQ++FLEAENP+K+I
Sbjct: 1   MALVPMVVEQTSRGERSYDIFSRLLKERIIFMTGQVEDHMANLIVAQMMFLEAENPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+TAGM+IYDTMQFIKP +STFCMGQAASMG+ LL+AG KG RF LPN+R+
Sbjct: 61  YLYINSPGGVITAGMSIYDTMQFIKPDVSTFCMGQAASMGAFLLAAGAKGKRFCLPNSRV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DIE HA++I+K+K R+NE+  K+ G+  E +E+  +RD  +SA EA
Sbjct: 121 MIHQPLGGFQGQATDIEIHAREILKVKARMNELMAKHTGQPLEVIERDTERDRFLSAPEA 180

Query: 196 CDWGVVDKVLMSR 208
            D+G+VD VL  R
Sbjct: 181 VDYGLVDSVLSQR 193


>gi|296101559|ref|YP_003611705.1| ATP-dependent Clp protease, protease subunit [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295056018|gb|ADF60756.1| ATP-dependent Clp protease, protease subunit [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 207

 Score =  293 bits (750), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 130/208 (62%), Positives = 175/208 (84%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D+    + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--ERDNFAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+  ++ G++ E++
Sbjct: 119 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKARMNELMAQHTGQSLEQI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SASEA ++G+VD +L  R
Sbjct: 179 ERDTERDRFLSASEAVEYGLVDSILTHR 206


>gi|260427575|ref|ZP_05781554.1| Clp protease [Citreicella sp. SE45]
 gi|260422067|gb|EEX15318.1| Clp protease [Citreicella sp. SE45]
          Length = 210

 Score =  293 bits (750), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 133/201 (66%), Positives = 173/201 (86%), Gaps = 1/201 (0%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           KD  D ++  LVPMVVEQT+RGER+YDI+SRLLKERI+FV+G + D M++LI AQLL LE
Sbjct: 2   KDPFDTYMNTLVPMVVEQTSRGERAYDIFSRLLKERIIFVSGPVHDGMSSLIVAQLLHLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AENP KEIS+YINSPGGVVT+G++IYDTMQ+IKP IST  +GQAASMGSLLL+AGE GMR
Sbjct: 62  AENPAKEISMYINSPGGVVTSGLSIYDTMQYIKPKISTLVIGQAASMGSLLLTAGEAGMR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           F+LPN+RI++HQPSGG+ GQA+DI  HA++ +K+KRRLNEIYV++ G+T E+VE  L+RD
Sbjct: 122 FSLPNSRIMVHQPSGGYQGQATDIMIHAEETLKLKRRLNEIYVRHTGQTLEKVEAALERD 181

Query: 188 HIMSASEACDWGVVDKVLMSR 208
           + MS  +A +WG++D+++ SR
Sbjct: 182 NFMSPEDAKEWGLIDEIVESR 202


>gi|304395499|ref|ZP_07377382.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pantoea sp.
           aB]
 gi|304356793|gb|EFM21157.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pantoea sp.
           aB]
          Length = 207

 Score =  293 bits (750), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 130/192 (67%), Positives = 166/192 (86%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA LI AQ+LFLEAENP+K+I 
Sbjct: 15  ALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIY 74

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGV+TAGM+IYDTM+FIKP +ST CMGQA SMG+ LL+AG KG RF LPN+R++
Sbjct: 75  LYINSPGGVITAGMSIYDTMKFIKPDVSTICMGQACSMGAFLLTAGTKGKRFCLPNSRVM 134

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG+ GQASDIE HA++I+K+K+R+NE+  ++ GKT EE+E+  +RD  +SASEA 
Sbjct: 135 IHQPLGGYQGQASDIEIHAREILKVKQRMNELMAEHTGKTLEEIERDTERDRFLSASEAV 194

Query: 197 DWGVVDKVLMSR 208
           ++G+VD +L  R
Sbjct: 195 EYGLVDSILTHR 206


>gi|146277488|ref|YP_001167647.1| ATP-dependent Clp protease proteolytic subunit [Rhodobacter
           sphaeroides ATCC 17025]
 gi|166214703|sp|A4WSH8|CLPP_RHOS5 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|145555729|gb|ABP70342.1| Endopeptidase Clp [Rhodobacter sphaeroides ATCC 17025]
          Length = 210

 Score =  293 bits (750), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 132/209 (63%), Positives = 178/209 (85%), Gaps = 1/209 (0%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           KD  D+++  LVPMVVEQT+RGER+YDI+SR+LKERI+F++G + D M++LICAQLLFLE
Sbjct: 2   KDPIDLYMNTLVPMVVEQTSRGERAYDIFSRMLKERIIFLSGPVHDGMSSLICAQLLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AENP KEI++YINSPGGVVT+G++IYDTMQ+I+P +ST  +GQAASMGSLLL+AGEKGMR
Sbjct: 62  AENPSKEIAMYINSPGGVVTSGLSIYDTMQYIRPKVSTLVIGQAASMGSLLLTAGEKGMR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           F+LPN+R+++HQPSGG+ GQA+DI  HA++  K+KRRLNEIYVK+ G+  + VE  L+RD
Sbjct: 122 FSLPNSRVMVHQPSGGYQGQATDIMIHARETEKLKRRLNEIYVKHTGQDLDTVEAALERD 181

Query: 188 HIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           + MSA +A  WG++D++L SR   ++ +K
Sbjct: 182 NFMSAEDAKAWGLIDEILESRGKTDDTAK 210


>gi|123443342|ref|YP_001007316.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|2493738|sp|Q60107|CLPP_YEREN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166214722|sp|A1JNN2|CLPP_YERE8 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|1377852|gb|AAC45782.1| ClpP [Yersinia enterocolitica]
 gi|122090303|emb|CAL13169.1| ATP-dependent Clp protease proteolytic subunit ClpP [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 207

 Score =  292 bits (748), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 134/208 (64%), Positives = 171/208 (82%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D     + LVPMVVEQT+RGERSYDI+SRLLKERI+F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--ERDQFAPNMALVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDHMANLIT 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIFLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GGF GQA+DIE HA++I+K+K R+NE+  K+ GK+ EE+
Sbjct: 119 AGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKEILKVKSRMNELMAKHTGKSLEEI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA EA ++G+VD V   R
Sbjct: 179 ERDTERDRFLSADEAVEYGLVDSVFTRR 206


>gi|157146946|ref|YP_001454265.1| hypothetical protein CKO_02723 [Citrobacter koseri ATCC BAA-895]
 gi|157084151|gb|ABV13829.1| hypothetical protein CKO_02723 [Citrobacter koseri ATCC BAA-895]
          Length = 243

 Score =  292 bits (747), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 130/208 (62%), Positives = 174/208 (83%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D+    + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 37  MSYSG--ERDNFAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIV 94

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 95  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 154

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+   + G++ E++
Sbjct: 155 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQI 214

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SASEA ++G+VD +L  R
Sbjct: 215 ERDTERDRFLSASEAVEYGLVDSILTHR 242


>gi|237730414|ref|ZP_04560895.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226905953|gb|EEH91871.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 243

 Score =  292 bits (747), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 130/208 (62%), Positives = 174/208 (83%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D+    + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 37  MSYSG--ERDNFAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIV 94

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 95  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 154

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+   + G++ E++
Sbjct: 155 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQI 214

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SASEA ++G+VD +L  R
Sbjct: 215 ERDTERDRFLSASEAVEYGLVDSILTHR 242


>gi|332160749|ref|YP_004297326.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|318604628|emb|CBY26126.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325664979|gb|ADZ41623.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330859950|emb|CBX70279.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
           enterocolitica W22703]
          Length = 207

 Score =  292 bits (747), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 134/208 (64%), Positives = 170/208 (81%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D     + LVPMVVEQT+RGERSYDI+SRLLKERI+F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--ERDQFAPNMALVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDHMANLIT 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIFLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GGF GQA+DIE HA++I+K+K R+NE+  K+ GK+ EE+
Sbjct: 119 AGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKEILKVKSRMNELMAKHTGKSLEEI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA EA  +G+VD V   R
Sbjct: 179 ERDTERDRFLSADEAVKYGLVDSVFTRR 206


>gi|146310565|ref|YP_001175639.1| ATP-dependent Clp protease proteolytic subunit [Enterobacter sp.
           638]
 gi|145317441|gb|ABP59588.1| ATP-dependent Clp protease proteolytic subunit ClpP [Enterobacter
           sp. 638]
          Length = 207

 Score =  291 bits (746), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 130/208 (62%), Positives = 174/208 (83%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D+    + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 1   MSYNG--ERDNIAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+   + G++ E++
Sbjct: 119 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SASEA ++G+VD +L  R
Sbjct: 179 ERDTERDRFLSASEAVEYGLVDSILTHR 206


>gi|308185908|ref|YP_003930039.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease,
           heat shock protein F21.5 [Pantoea vagans C9-1]
 gi|308056418|gb|ADO08590.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease,
           heat shock protein F21.5 [Pantoea vagans C9-1]
          Length = 207

 Score =  291 bits (746), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 129/192 (67%), Positives = 166/192 (86%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA LI AQ+LFLEAENP+K+I 
Sbjct: 15  ALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIY 74

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGV+TAGM+IYDTM+FIKP +ST CMGQA SMG+ LL+AG KG RF LPN+R++
Sbjct: 75  LYINSPGGVITAGMSIYDTMKFIKPDVSTICMGQACSMGAFLLTAGTKGKRFCLPNSRVM 134

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG+ GQASDIE HA++I+K+K+R+NE+  ++ GKT EE+E+  +RD  +SA+EA 
Sbjct: 135 IHQPLGGYQGQASDIEIHAREILKVKQRMNELMAEHTGKTLEEIERDTERDRFLSANEAV 194

Query: 197 DWGVVDKVLMSR 208
           ++G+VD +L  R
Sbjct: 195 EYGLVDSILTHR 206


>gi|291085757|ref|ZP_06571180.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Citrobacter
           youngae ATCC 29220]
 gi|291069764|gb|EFE07873.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Citrobacter
           youngae ATCC 29220]
          Length = 243

 Score =  291 bits (746), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 130/208 (62%), Positives = 174/208 (83%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D+    + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 37  MSYSG--ERDNFAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFMTGQVEDHMANLIV 94

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 95  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 154

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+   + G++ E++
Sbjct: 155 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQI 214

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SASEA ++G+VD +L  R
Sbjct: 215 ERDTERDRFLSASEAVEYGLVDSILTHR 242


>gi|37527729|ref|NP_931074.1| ATP-dependent Clp protease proteolytic subunit [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|60389709|sp|Q7N0L3|CLPP_PHOLL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|36787165|emb|CAE16241.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease,
           heat shock protein F21.5 (Endopeptidase Clp)
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 207

 Score =  291 bits (746), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 131/201 (65%), Positives = 164/201 (81%)

Query: 8   KKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           K+D     + LVPMVVEQT RGERSYDIYSRLLKERI+F+TGQ+EDHMA L+ AQ+LFLE
Sbjct: 6   KRDQYAPHMALVPMVVEQTTRGERSYDIYSRLLKERIIFLTGQVEDHMANLVAAQMLFLE 65

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+AG KG R
Sbjct: 66  AENPEKDIFLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLTAGAKGKR 125

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
             LPN+R+++HQP GGF GQA+DIE HAQ+I+K+K R+NE+  K+ G+  EE+ K  +RD
Sbjct: 126 ICLPNSRVMIHQPLGGFQGQATDIEIHAQEILKVKSRMNELMAKHTGRPIEEIAKDTERD 185

Query: 188 HIMSASEACDWGVVDKVLMSR 208
             +SA EA ++G+VDK+   R
Sbjct: 186 RFLSADEAVEYGLVDKIFTHR 206


>gi|149916365|ref|ZP_01904885.1| phosphoglycerate kinase [Roseobacter sp. AzwK-3b]
 gi|149809819|gb|EDM69671.1| phosphoglycerate kinase [Roseobacter sp. AzwK-3b]
          Length = 210

 Score =  291 bits (745), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 129/197 (65%), Positives = 172/197 (87%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQT+RGER+YDI+SRLLKERI+FV G + D M++LI AQLL LEAENP KEIS+
Sbjct: 12  LVPMVVEQTSRGERAYDIFSRLLKERIIFVNGPVHDGMSSLIVAQLLHLEAENPAKEISM 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G++IYDTMQ+IKP +ST  +GQAASMGSLLL+AGEKGMRF+LPN+RI++
Sbjct: 72  YINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLTAGEKGMRFSLPNSRIMV 131

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG+ GQA+DI  HA++ +K+K+RLN+IYVK+ G+T ++VE  L+RD+ MS  EA +
Sbjct: 132 HQPSGGYQGQATDIMIHAEETLKLKKRLNQIYVKHTGQTLKKVEDALERDNFMSPEEAKN 191

Query: 198 WGVVDKVLMSRIDIEEK 214
           WG++D+++ SR+  +++
Sbjct: 192 WGLIDEIVESRVKTDDE 208


>gi|291616549|ref|YP_003519291.1| ClpP [Pantoea ananatis LMG 20103]
 gi|291151579|gb|ADD76163.1| ClpP [Pantoea ananatis LMG 20103]
 gi|327392981|dbj|BAK10403.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pantoea
           ananatis AJ13355]
          Length = 218

 Score =  291 bits (744), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 128/192 (66%), Positives = 166/192 (86%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA LI AQ+LFLEAENP+K+I 
Sbjct: 26  ALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIY 85

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGV+TAGM+IYDTM+FIKP +ST CMGQA SMG+ LL+AG KG RF LPN+R++
Sbjct: 86  LYINSPGGVITAGMSIYDTMKFIKPDVSTICMGQACSMGAFLLTAGTKGKRFCLPNSRVM 145

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG+ GQA+DIE HA++I+K+K+R+NE+  ++ GK+ EE+E+  +RD  +SASEA 
Sbjct: 146 IHQPLGGYQGQATDIEIHAREILKVKQRMNELMAEHTGKSLEEIERDTERDRFLSASEAV 205

Query: 197 DWGVVDKVLMSR 208
           ++G+VD +L  R
Sbjct: 206 EYGLVDSILTHR 217


>gi|170744618|ref|YP_001773273.1| ATP-dependent Clp protease proteolytic subunit [Methylobacterium
           sp. 4-46]
 gi|168198892|gb|ACA20839.1| Endopeptidase Clp [Methylobacterium sp. 4-46]
          Length = 208

 Score =  291 bits (744), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 131/194 (67%), Positives = 169/194 (87%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQ++RGER++DIYSRLL+ERI+F+TG +ED+ A+LI AQLLFLEAENP+KEIS
Sbjct: 11  ALVPMVVEQSSRGERAFDIYSRLLRERIIFLTGPVEDYSASLIVAQLLFLEAENPKKEIS 70

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            YINSPGGVVT+G++IYDTMQFI+ P++T C+GQAASMGSLLL+AGE G RFALPNARI+
Sbjct: 71  FYINSPGGVVTSGLSIYDTMQFIRCPVATLCVGQAASMGSLLLAAGEPGHRFALPNARIM 130

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGGF GQA+DI  HA++I  +KRRLNEIYVK+ G+ Y+ +E+ L+RD+ M+A  A 
Sbjct: 131 VHQPSGGFQGQATDILIHAREIEALKRRLNEIYVKHTGRDYDAIEQGLERDNFMTADAAK 190

Query: 197 DWGVVDKVLMSRID 210
           +WG++D+VL  R +
Sbjct: 191 EWGLIDEVLQKRAE 204


>gi|317492909|ref|ZP_07951333.1| Clp protease [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919031|gb|EFV40366.1| Clp protease [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 206

 Score =  291 bits (744), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 130/193 (67%), Positives = 164/193 (84%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT+RGERSYDI+SRLLKERI+F+TGQ+EDHMA LI AQ+LFLEAENP+K+I
Sbjct: 13  MALVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAENPEKDI 72

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+AG KG RF LPN+R+
Sbjct: 73  HLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLTAGAKGKRFCLPNSRV 132

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DIE HA++I+K+K R+NE+  K+ GK  EE+E+  +RD  +SA EA
Sbjct: 133 MIHQPLGGFQGQATDIEIHAKEILKVKARMNELMAKHSGKPLEEIERDTERDRFLSADEA 192

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD V+  R
Sbjct: 193 VEYGLVDSVMTHR 205


>gi|212709197|ref|ZP_03317325.1| hypothetical protein PROVALCAL_00230 [Providencia alcalifaciens DSM
           30120]
 gi|212688109|gb|EEB47637.1| hypothetical protein PROVALCAL_00230 [Providencia alcalifaciens DSM
           30120]
          Length = 206

 Score =  291 bits (744), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 128/193 (66%), Positives = 165/193 (85%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMV+EQT+RGERSYDIYSRLLKERI+F+TGQ+EDHMA LI AQ+LFLEAENP+K+I
Sbjct: 14  MALVPMVIEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAENPEKDI 73

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+AG KG RF LPN+R+
Sbjct: 74  QLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLTAGTKGKRFCLPNSRV 133

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG+ GQA+DIE HAQ+I+K+K R+NE+  ++ GK+ EE+ +  +RD  +SA+EA
Sbjct: 134 MIHQPLGGYQGQATDIEIHAQEILKVKSRMNELMAQHTGKSIEEISRDTERDRFLSANEA 193

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD +  SR
Sbjct: 194 KEYGLVDHIYTSR 206


>gi|242240292|ref|YP_002988473.1| ATP-dependent Clp protease proteolytic subunit ClpP [Dickeya
           dadantii Ech703]
 gi|242132349|gb|ACS86651.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dickeya
           dadantii Ech703]
          Length = 207

 Score =  290 bits (743), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 131/208 (62%), Positives = 173/208 (83%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  +++ +   + LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+ED+MA LI 
Sbjct: 1   MSYSG--EQEKQTPHMALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDYMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GGF GQA+DIE HA++I+K+K R+NE+  K+ G++ + +
Sbjct: 119 AGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKEILKVKARMNELMAKHTGQSLDII 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA EA ++G+VD VL  R
Sbjct: 179 ERDTERDRFLSAGEAVEYGLVDSVLTHR 206


>gi|206578475|ref|YP_002240083.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Klebsiella
           pneumoniae 342]
 gi|238893386|ref|YP_002918120.1| ATP-dependent Clp protease proteolytic subunit [Klebsiella
           pneumoniae NTUH-K2044]
 gi|288936834|ref|YP_003440893.1| ATP-dependent Clp protease proteolytic subunit ClpP [Klebsiella
           variicola At-22]
 gi|290510110|ref|ZP_06549480.1| Clp protease [Klebsiella sp. 1_1_55]
 gi|206567533|gb|ACI09309.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Klebsiella
           pneumoniae 342]
 gi|238545702|dbj|BAH62053.1| ATP-dependent Clp protease proteolytic subunit [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|288891543|gb|ADC59861.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Klebsiella
           variicola At-22]
 gi|289776826|gb|EFD84824.1| Clp protease [Klebsiella sp. 1_1_55]
          Length = 207

 Score =  290 bits (743), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 129/208 (62%), Positives = 174/208 (83%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D+    + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--ERDNFAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+   + G++ E++
Sbjct: 119 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA+EA ++G+VD +L  R
Sbjct: 179 ERDTERDRFLSAAEAVEYGLVDSILTHR 206


>gi|271499597|ref|YP_003332622.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dickeya
           dadantii Ech586]
 gi|270343152|gb|ACZ75917.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dickeya
           dadantii Ech586]
          Length = 207

 Score =  290 bits (743), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 132/208 (63%), Positives = 173/208 (83%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  +K +    + LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+ED+MA LI 
Sbjct: 1   MSYSGEQEKLAPH--MALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDYMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GGF GQA+DIE HA++I+K+K R+NE+  K+ G++ + +
Sbjct: 119 AGTKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKEILKVKARMNELMAKHTGQSLDVI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA+EA ++G+VD VL  R
Sbjct: 179 ERDTERDRFLSAAEAVEYGLVDSVLTHR 206


>gi|317047175|ref|YP_004114823.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pantoea sp.
           At-9b]
 gi|316948792|gb|ADU68267.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pantoea sp.
           At-9b]
          Length = 207

 Score =  290 bits (743), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 130/208 (62%), Positives = 173/208 (83%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G   ++     + LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--DREFTAPHMALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTM+FIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMKFIKPDVSTICMGQACSMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K+R+NE+  ++ GK+ E++
Sbjct: 119 AGTKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKQRMNELMAEHTGKSLEQI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SASEA ++G+VD +L  R
Sbjct: 179 ERDTERDRFLSASEAVEYGLVDSILTHR 206


>gi|268592036|ref|ZP_06126257.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Providencia
           rettgeri DSM 1131]
 gi|291312428|gb|EFE52881.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Providencia
           rettgeri DSM 1131]
          Length = 206

 Score =  290 bits (743), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 129/193 (66%), Positives = 165/193 (85%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMV+EQT+RGERSYDIYSRLLKERI+F+TGQ+EDHMA LI AQ+LFLEAENP+K+I
Sbjct: 14  MALVPMVIEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAENPEKDI 73

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+AG KG RF LPN+R+
Sbjct: 74  HLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLTAGTKGKRFCLPNSRV 133

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG+ GQASDIE HAQ+I+K+K R+NE+   + GK+ EE+ +  +RD  +SA+EA
Sbjct: 134 MIHQPLGGYQGQASDIEIHAQEILKVKSRMNELMALHTGKSIEEITRDTERDRFLSANEA 193

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD++  SR
Sbjct: 194 KEYGLVDQIYSSR 206


>gi|161615359|ref|YP_001589324.1| hypothetical protein SPAB_03130 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|197263975|ref|ZP_03164049.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|198242637|ref|YP_002214402.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|200390046|ref|ZP_03216657.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|205357179|ref|ZP_02345490.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205359635|ref|ZP_02830941.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|224582286|ref|YP_002636084.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|161364723|gb|ABX68491.1| hypothetical protein SPAB_03130 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|197242230|gb|EDY24850.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197937153|gb|ACH74486.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|199602491|gb|EDZ01037.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|205323485|gb|EDZ11324.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205344194|gb|EDZ30958.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|224466813|gb|ACN44643.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|322713521|gb|EFZ05092.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
 gi|326622151|gb|EGE28496.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
          Length = 243

 Score =  290 bits (742), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 129/208 (62%), Positives = 173/208 (83%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D+    + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 37  MSYSG--ERDNLAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIV 94

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 95  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 154

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+   + G++ E++
Sbjct: 155 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQI 214

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA EA ++G+VD +L  R
Sbjct: 215 ERDTERDRFLSAPEAVEYGLVDSILTHR 242


>gi|310816210|ref|YP_003964174.1| Protease subunit of ATP-dependent Clp protease [Ketogulonicigenium
           vulgare Y25]
 gi|308754945|gb|ADO42874.1| Protease subunit of ATP-dependent Clp protease [Ketogulonicigenium
           vulgare Y25]
          Length = 207

 Score =  290 bits (742), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 131/206 (63%), Positives = 174/206 (84%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  + ++ LVPMVVEQT+RGER+YDI+SRLLKERI+FV+G +ED M+ LI AQLL LEA
Sbjct: 2   RDPVETYMNLVPMVVEQTSRGERAYDIFSRLLKERIIFVSGVVEDGMSQLIVAQLLHLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEIS+YINSPGGVVT+G++IYDTMQ+I+P +ST  +GQAASMGSLLL+AGE GMR+
Sbjct: 62  ENPKKEISMYINSPGGVVTSGLSIYDTMQYIRPKVSTLVIGQAASMGSLLLAAGEAGMRY 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPN+R+++HQPSGGF GQ +DI  HA++  K+KRRLNEIYVK+ G++YE VE  L+RD+
Sbjct: 122 SLPNSRVMVHQPSGGFQGQVTDIMIHARESEKLKRRLNEIYVKHTGQSYEAVEAALERDN 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIEEK 214
             SA EA ++G++D++L  R +  EK
Sbjct: 182 FKSAEEAKEFGLIDEILEKRGETPEK 207


>gi|119384010|ref|YP_915066.1| endopeptidase Clp [Paracoccus denitrificans PD1222]
 gi|119373777|gb|ABL69370.1| ATP-dependent Clp protease proteolytic subunit ClpP [Paracoccus
           denitrificans PD1222]
          Length = 209

 Score =  290 bits (742), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 131/191 (68%), Positives = 167/191 (87%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQT+RGER+YDI+SRLLKERI+F++G + D MATLI AQLLFLEAENP K+IS+
Sbjct: 12  LVPMVVEQTSRGERAYDIFSRLLKERIIFLSGPVHDGMATLISAQLLFLEAENPTKDISM 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G++IYDTMQ+IKP +ST  +GQAASMGSLLL AG+ G RF+LPN+R+++
Sbjct: 72  YINSPGGVVTSGLSIYDTMQYIKPRVSTLVVGQAASMGSLLLCAGQPGQRFSLPNSRVMV 131

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGGF GQA+DI  HA++  K+KRRLNEIYVK+ G+T EEVE+ L+RD  MS  EA +
Sbjct: 132 HQPSGGFQGQATDILIHARETEKLKRRLNEIYVKHTGRTLEEVEQALERDRFMSPEEAKE 191

Query: 198 WGVVDKVLMSR 208
           WG++D++L++R
Sbjct: 192 WGLIDEILVAR 202


>gi|194471774|ref|ZP_03077758.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|197249758|ref|YP_002145429.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|205357584|ref|ZP_02571531.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205358475|ref|ZP_02656494.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|205358901|ref|ZP_02665206.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|289827300|ref|ZP_06545983.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
 gi|194458138|gb|EDX46977.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|197213461|gb|ACH50858.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|205331008|gb|EDZ17772.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205334088|gb|EDZ20852.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|205340153|gb|EDZ26917.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|321226026|gb|EFX51077.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
          Length = 243

 Score =  290 bits (742), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 129/208 (62%), Positives = 173/208 (83%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D+    + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 37  MSYSG--ERDNLAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIV 94

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 95  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 154

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+   + G++ E++
Sbjct: 155 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQI 214

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA EA ++G+VD +L  R
Sbjct: 215 ERDTERDRFLSAPEAVEYGLVDSILTHR 242


>gi|161504375|ref|YP_001571487.1| hypothetical protein SARI_02486 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865722|gb|ABX22345.1| hypothetical protein SARI_02486 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 243

 Score =  290 bits (742), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 129/208 (62%), Positives = 173/208 (83%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D+    + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 37  MSYSG--ERDNFAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIV 94

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 95  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 154

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+   + G++ E++
Sbjct: 155 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQI 214

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA EA ++G+VD +L  R
Sbjct: 215 ERDTERDRFLSAPEAVEYGLVDSILTHR 242


>gi|16759428|ref|NP_455045.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|16763829|ref|NP_459444.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|29142800|ref|NP_806142.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|162139608|ref|YP_215477.2| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|168237562|ref|ZP_02662620.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|168261116|ref|ZP_02683089.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168465541|ref|ZP_02699423.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|194443946|ref|YP_002039691.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194451357|ref|YP_002044483.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194734455|ref|YP_002113479.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|204930575|ref|ZP_03221505.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|207855928|ref|YP_002242579.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|213025962|ref|ZP_03340409.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
 gi|213419494|ref|ZP_03352560.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
 gi|213425858|ref|ZP_03358608.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Typhi str. E02-1180]
 gi|213646005|ref|ZP_03376058.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Typhi str. J185]
 gi|213853068|ref|ZP_03382600.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Typhi str. M223]
 gi|238911421|ref|ZP_04655258.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|60391923|sp|P0A1D7|CLPP_SALTY RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp; Flags: Precursor
 gi|60391924|sp|P0A1D8|CLPP_SALTI RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp; Flags: Precursor
 gi|67460140|sp|Q57SB5|CLPP_SALCH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp; Flags: Precursor
 gi|226706468|sp|B5QTJ6|CLPP_SALEP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706469|sp|B4T9E3|CLPP_SALHS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706470|sp|B4SWU1|CLPP_SALNS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706472|sp|B4TMC6|CLPP_SALSV RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|25289858|pir||AC0558 ATP-dependent clp protease proteolytic chain [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|7594816|dbj|BAA94668.1| serine protease subunit [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|16418955|gb|AAL19403.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|16501719|emb|CAD08907.1| ATP-dependent clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29138432|gb|AAO70002.1| ATP-dependent clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|194402609|gb|ACF62831.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194409661|gb|ACF69880.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194709957|gb|ACF89178.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|195631923|gb|EDX50443.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|197289522|gb|EDY28885.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|204320509|gb|EDZ05712.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205350070|gb|EDZ36701.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|206707731|emb|CAR32016.1| ATP-dependent clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|261245731|emb|CBG23528.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267992163|gb|ACY87048.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301157059|emb|CBW16543.1| ATP-dependent clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312911481|dbj|BAJ35455.1| ATP-dependent Clp protease proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           T000240]
 gi|320084722|emb|CBY94513.1| ATP-dependent clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|322614726|gb|EFY11655.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322618832|gb|EFY15720.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322623539|gb|EFY20378.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322629162|gb|EFY25941.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322631883|gb|EFY28637.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322637380|gb|EFY34082.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322642065|gb|EFY38675.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
 gi|322647884|gb|EFY44359.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322652562|gb|EFY48916.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322653276|gb|EFY49609.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322660575|gb|EFY56811.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322664727|gb|EFY60920.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322669220|gb|EFY65370.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322670765|gb|EFY66898.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322678996|gb|EFY75051.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322682025|gb|EFY78050.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322685146|gb|EFY81143.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|323192960|gb|EFZ78183.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323196958|gb|EFZ82100.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323203943|gb|EFZ88960.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323206972|gb|EFZ91925.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323214175|gb|EFZ98933.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323214501|gb|EFZ99252.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323223058|gb|EGA07401.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323227007|gb|EGA11188.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323230175|gb|EGA14295.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323233913|gb|EGA18002.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323238393|gb|EGA22451.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323244080|gb|EGA28089.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323246241|gb|EGA30224.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323251867|gb|EGA35730.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323257864|gb|EGA41543.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323261123|gb|EGA44715.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323264947|gb|EGA48446.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323272510|gb|EGA55917.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
          Length = 207

 Score =  290 bits (742), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 129/208 (62%), Positives = 173/208 (83%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D+    + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--ERDNLAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+   + G++ E++
Sbjct: 119 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA EA ++G+VD +L  R
Sbjct: 179 ERDTERDRFLSAPEAVEYGLVDSILTHR 206


>gi|261346364|ref|ZP_05974008.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Providencia
           rustigianii DSM 4541]
 gi|282565678|gb|EFB71213.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Providencia
           rustigianii DSM 4541]
          Length = 206

 Score =  290 bits (742), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 128/193 (66%), Positives = 164/193 (84%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMV+EQT+RGERSYDIYSRLLKERI+F+TGQ+EDHMA LI AQ+LFLEAENP+K+I
Sbjct: 14  MALVPMVIEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAENPEKDI 73

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+AG KG RF LPN+R+
Sbjct: 74  HLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLTAGTKGKRFCLPNSRV 133

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG+ GQA+DIE HAQ+I+K+K R+NE+   + GK+ EE+ +  +RD  +SA+EA
Sbjct: 134 MIHQPLGGYQGQATDIEIHAQEILKVKSRMNELMAHHTGKSIEEISRDTERDRFLSANEA 193

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD +  SR
Sbjct: 194 KEYGLVDHIYTSR 206


>gi|310766842|gb|ADP11792.1| ATP-dependent Clp protease proteolytic subunit clpP [Erwinia sp.
           Ejp617]
          Length = 215

 Score =  290 bits (741), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 132/208 (63%), Positives = 171/208 (82%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  +++     + LVPMVVEQT+RGERSYDIYSRLLKERI+F+TGQ+EDHMA LI 
Sbjct: 9   MSYSG--ERELTAPHMALVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLIV 66

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 67  AQMLFLEAENPEKDIHLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLT 126

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG R+ LPN+R+++HQP GGF GQASDI+ HA++I+K K+ +NE+  K+ G+T E +
Sbjct: 127 AGAKGKRYCLPNSRVMIHQPLGGFQGQASDIDIHAREIIKTKQMMNELMAKHTGQTIETI 186

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SASE+ ++G+VD VL  R
Sbjct: 187 ERDTNRDRFLSASESVEYGLVDSVLSQR 214


>gi|292487467|ref|YP_003530339.1| ATP-dependent Clp protease proteolytic subunit ClpP [Erwinia
           amylovora CFBP1430]
 gi|292898709|ref|YP_003538078.1| ATP-dependent clp protease proteolytic subunit [Erwinia amylovora
           ATCC 49946]
 gi|291198557|emb|CBJ45665.1| ATP-dependent clp protease proteolytic subunit [Erwinia amylovora
           ATCC 49946]
 gi|291552886|emb|CBA19931.1| ATP-dependent Clp protease proteolytic subunit clpP [Erwinia
           amylovora CFBP1430]
 gi|312171571|emb|CBX79829.1| ATP-dependent Clp protease proteolytic subunit clpP [Erwinia
           amylovora ATCC BAA-2158]
          Length = 207

 Score =  290 bits (741), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 132/208 (63%), Positives = 171/208 (82%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  +++     + LVPMVVEQT+RGERSYDIYSRLLKERI+F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--ERELTAPHMALVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIHLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG R+ LPN+R+++HQP GGF GQASDI+ HA++I+K K+ +NE+  K+ G+T E +
Sbjct: 119 AGAKGKRYCLPNSRVMIHQPLGGFQGQASDIDIHAREIIKTKQMMNELMAKHTGQTIENI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SASE+ ++G+VD VL  R
Sbjct: 179 ERDTNRDRFLSASESVEYGLVDSVLSQR 206


>gi|227113465|ref|ZP_03827121.1| ATP-dependent Clp protease proteolytic subunit [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
 gi|253687443|ref|YP_003016633.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251754021|gb|ACT12097.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 207

 Score =  290 bits (741), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 131/208 (62%), Positives = 171/208 (82%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  +++ +   + LVPMVVEQT+RGERSYDIYSRLLKERI+F+TGQ+EDHMA L+ 
Sbjct: 1   MSYSG--EQERQAPHMALVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLVV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG R  LPN+R+++HQP GGF GQA+DIE HA++I+K+K ++NE+  K+ G+  E +
Sbjct: 119 AGAKGKRICLPNSRVMIHQPLGGFQGQATDIEIHAKEILKVKAKMNELMAKHTGQPLEAI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SASEA D+G+VD V  +R
Sbjct: 179 ERDTERDRFLSASEAVDYGLVDSVFTNR 206


>gi|259909254|ref|YP_002649610.1| Putative ATP-dependent Clp protease proteolytic subunit [Erwinia
           pyrifoliae Ep1/96]
 gi|224964876|emb|CAX56398.1| Putative ATP-dependent Clp protease proteolytic subunit [Erwinia
           pyrifoliae Ep1/96]
          Length = 207

 Score =  290 bits (741), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 132/208 (63%), Positives = 171/208 (82%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  +++     + LVPMVVEQT+RGERSYDIYSRLLKERI+F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--ERELTAPHMALVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIHLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG R+ LPN+R+++HQP GGF GQASDI+ HA++I+K K+ +NE+  K+ G+T E +
Sbjct: 119 AGAKGKRYCLPNSRVMIHQPLGGFQGQASDIDIHAREIIKTKQMMNELMAKHTGQTIETI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SASE+ ++G+VD VL  R
Sbjct: 179 ERDTNRDRFLSASESVEYGLVDSVLSQR 206


>gi|23014984|ref|ZP_00054776.1| COG0740: Protease subunit of ATP-dependent Clp proteases
           [Magnetospirillum magnetotacticum MS-1]
          Length = 213

 Score =  290 bits (741), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 134/209 (64%), Positives = 175/209 (83%), Gaps = 1/209 (0%)

Query: 8   KKDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
           ++D  DV++  LVPMVVEQTNRGERSYDIYSRLLKERIVF+TGQ+ D +A+LICAQLLFL
Sbjct: 3   ERDPIDVYMNTLVPMVVEQTNRGERSYDIYSRLLKERIVFLTGQVYDEVASLICAQLLFL 62

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E+ENP K+IS YINSPGGVVT+G+AIYDTMQ+I+P +ST C+GQAASMGSLL++AGEKG 
Sbjct: 63  ESENPSKDISFYINSPGGVVTSGLAIYDTMQYIRPAVSTLCIGQAASMGSLLMTAGEKGK 122

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           RF+LPN+RI++HQPSGG  GQA+DIE  A++I+ ++ RLN IYV + G+  E +EK ++R
Sbjct: 123 RFSLPNSRIMVHQPSGGAQGQATDIEIQAREILALRARLNNIYVDHTGQPLEVIEKVMER 182

Query: 187 DHIMSASEACDWGVVDKVLMSRIDIEEKS 215
           D  M+A EA ++G++D+V+  R   E+ S
Sbjct: 183 DKFMTAEEAKEFGLIDEVVNKRPVAEDDS 211


>gi|188534634|ref|YP_001908431.1| Putative ATP-dependent Clp protease proteolytic subunit [Erwinia
           tasmaniensis Et1/99]
 gi|188029676|emb|CAO97555.1| Putative ATP-dependent Clp protease proteolytic subunit [Erwinia
           tasmaniensis Et1/99]
          Length = 207

 Score =  290 bits (741), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 132/208 (63%), Positives = 171/208 (82%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  +++     + LVPMVVEQT+RGERSYDIYSRLLKERI+F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--ERELTAPHMALVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIHLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG R+ LPN+R+++HQP GGF GQASDI+ HA++I+K K+ +NE+  K+ G+T E +
Sbjct: 119 AGAKGKRYCLPNSRVMIHQPLGGFQGQASDIDIHAREIIKTKQMMNELMAKHTGQTIETI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SASE+ ++G+VD VL  R
Sbjct: 179 ERDTNRDRFLSASESVEYGLVDSVLAQR 206


>gi|329296782|ref|ZP_08254118.1| ClpP [Plautia stali symbiont]
          Length = 207

 Score =  290 bits (741), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 127/192 (66%), Positives = 166/192 (86%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA LI AQ+LFLEAENP+K+I 
Sbjct: 15  ALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIY 74

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGV+TAGM+IYDTM+FIKP +ST CMGQA SMG+ LL+AG KG RF LPN+R++
Sbjct: 75  LYINSPGGVITAGMSIYDTMKFIKPDVSTICMGQACSMGAFLLTAGTKGKRFCLPNSRVM 134

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG+ GQA+DIE HA++I+K+K+R+NE+  ++ GK+ E++E+  +RD  +SASEA 
Sbjct: 135 IHQPLGGYQGQATDIEIHAREILKVKQRMNELMAEHTGKSLEQIERDTERDRFLSASEAV 194

Query: 197 DWGVVDKVLMSR 208
           ++G+VD +L  R
Sbjct: 195 EYGLVDSILTHR 206


>gi|144899460|emb|CAM76324.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 214

 Score =  290 bits (741), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 130/207 (62%), Positives = 177/207 (85%), Gaps = 1/207 (0%)

Query: 8   KKDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
           ++D  D+++  LVPMVVEQTNRGERSYDIYSRLLKERIVF+TGQ+ D ++TLICAQLLFL
Sbjct: 3   ERDPIDLYMNTLVPMVVEQTNRGERSYDIYSRLLKERIVFLTGQVYDEVSTLICAQLLFL 62

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E+ENP K+I+ YINSPGGVVT+G+A+YDTMQ+I+P +ST C+GQAASMGSLLL+AG KG 
Sbjct: 63  ESENPNKDIAFYINSPGGVVTSGLAMYDTMQYIRPSVSTVCLGQAASMGSLLLTAGAKGK 122

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           RF+LPNAR+++HQPSGG  GQA+DIE  A++I+ ++ RLN +YV++ G+T E +E+ ++R
Sbjct: 123 RFSLPNARVMIHQPSGGAQGQATDIEIQAREILALRARLNNMYVQHTGQTLEVIERAMER 182

Query: 187 DHIMSASEACDWGVVDKVLMSRIDIEE 213
           D  M+A EA ++G++D+V+ +R  +EE
Sbjct: 183 DKYMTADEAKEFGLIDEVVSNRPTLEE 209


>gi|220927143|ref|YP_002502445.1| ATP-dependent Clp protease proteolytic subunit [Methylobacterium
           nodulans ORS 2060]
 gi|254763797|sp|B8IN26|CLPP_METNO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|219951750|gb|ACL62142.1| peptidase S14 ClpP [Methylobacterium nodulans ORS 2060]
          Length = 209

 Score =  290 bits (741), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 131/194 (67%), Positives = 168/194 (86%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQ++RGER++DIYSRLL+ERI+F+TG +ED+ A+LI AQLLFLEAENP+KEIS
Sbjct: 11  ALVPMVVEQSSRGERAFDIYSRLLRERIIFLTGPVEDYSASLIVAQLLFLEAENPKKEIS 70

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            YINSPGGVVT+G++IYDTMQFI+ P++T C+GQAASMGSLLL+AGE G RFALPNARI+
Sbjct: 71  FYINSPGGVVTSGLSIYDTMQFIRCPVATLCVGQAASMGSLLLAAGEPGHRFALPNARIM 130

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGGF GQA+DI  HA++I  +KRRLNEIYVK+ G+ Y+ +E  L+RD+ M+A  A 
Sbjct: 131 VHQPSGGFQGQATDILIHAREIEALKRRLNEIYVKHTGRDYDTIELGLERDNFMTADAAR 190

Query: 197 DWGVVDKVLMSRID 210
           +WG++D+VL  R +
Sbjct: 191 EWGLIDEVLQKRAE 204


>gi|323128768|gb|ADX16198.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
          Length = 246

 Score =  290 bits (741), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 129/208 (62%), Positives = 173/208 (83%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D+    + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 40  MSYSG--ERDNLAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIV 97

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 98  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 157

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+   + G++ E++
Sbjct: 158 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQI 217

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA EA ++G+VD +L  R
Sbjct: 218 ERDTERDRFLSAPEAVEYGLVDSILTHR 245


>gi|62126693|gb|AAX64396.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease,
           heat shock protein F215 [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
          Length = 246

 Score =  290 bits (741), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 129/208 (62%), Positives = 173/208 (83%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D+    + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 40  MSYSG--ERDNLAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIV 97

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 98  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 157

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+   + G++ E++
Sbjct: 158 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQI 217

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA EA ++G+VD +L  R
Sbjct: 218 ERDTERDRFLSAPEAVEYGLVDSILTHR 245


>gi|238751006|ref|ZP_04612502.1| ATP-dependent Clp protease proteolytic subunit [Yersinia rohdei
           ATCC 43380]
 gi|238710696|gb|EEQ02918.1| ATP-dependent Clp protease proteolytic subunit [Yersinia rohdei
           ATCC 43380]
          Length = 207

 Score =  289 bits (740), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 132/208 (63%), Positives = 170/208 (81%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D     + LVPMVVEQT+RGERSYDI+SRLLKERI+F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--ERDQFAPNMALVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDHMANLIT 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIFLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GGF GQA+DIE HA++I+K+K R+NE+   + GK+ EE+
Sbjct: 119 AGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKEILKVKSRMNELMAHHTGKSLEEI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA +A ++G+VD V   R
Sbjct: 179 ERDTERDRFLSAEQAVEYGLVDSVFTRR 206


>gi|78485521|ref|YP_391446.1| ATP-dependent Clp protease proteolytic subunit [Thiomicrospira
           crunogena XCL-2]
 gi|110816468|sp|Q31GF1|CLPP_THICR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|78363807|gb|ABB41772.1| ATP-dependent Clp protease proteolytic subunit ClpP [Thiomicrospira
           crunogena XCL-2]
          Length = 200

 Score =  289 bits (740), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 131/192 (68%), Positives = 162/192 (84%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMV+EQT+RGERS+DIYSRLLKER++F+ GQ+EDHMA LI AQLLFLE+ENP K+I 
Sbjct: 9   ALVPMVIEQTSRGERSFDIYSRLLKERVIFLVGQVEDHMANLIVAQLLFLESENPDKDIH 68

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGMAIYDTM+FIKP +ST C+GQAASMGS LLSAG +G R+ALPN+R++
Sbjct: 69  LYINSPGGSVTAGMAIYDTMRFIKPDVSTMCIGQAASMGSFLLSAGAEGKRYALPNSRVM 128

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I++IK++LN+    + G+  E +E   DRD+ MSA EAC
Sbjct: 129 IHQPLGGFQGQASDIEIHAKEIIQIKQKLNKALADHTGQPIEVIENDTDRDNFMSADEAC 188

Query: 197 DWGVVDKVLMSR 208
           D+G+VDKVL  R
Sbjct: 189 DYGLVDKVLTRR 200


>gi|283479306|emb|CAY75222.1| ATP-dependent Clp protease proteolytic subunit clpP [Erwinia
           pyrifoliae DSM 12163]
          Length = 218

 Score =  289 bits (740), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 132/208 (63%), Positives = 171/208 (82%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  +++     + LVPMVVEQT+RGERSYDIYSRLLKERI+F+TGQ+EDHMA LI 
Sbjct: 12  MSYSG--ERELTAPHMALVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLIV 69

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 70  AQMLFLEAENPEKDIHLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLT 129

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG R+ LPN+R+++HQP GGF GQASDI+ HA++I+K K+ +NE+  K+ G+T E +
Sbjct: 130 AGAKGKRYCLPNSRVMIHQPLGGFQGQASDIDIHAREIIKTKQMMNELMAKHTGQTIETI 189

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SASE+ ++G+VD VL  R
Sbjct: 190 ERDTNRDRFLSASESVEYGLVDSVLSQR 217


>gi|283784263|ref|YP_003364128.1| ATP-dependent clp protease proteolytic subunit [Citrobacter
           rodentium ICC168]
 gi|282947717|emb|CBG87272.1| ATP-dependent clp protease proteolytic subunit [Citrobacter
           rodentium ICC168]
          Length = 207

 Score =  289 bits (740), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 129/208 (62%), Positives = 173/208 (83%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D+    + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--ERDNFAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+   + G++ E++
Sbjct: 119 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA EA ++G+VD +L  R
Sbjct: 179 ERDTERDRFLSAPEAVEYGLVDSILTHR 206


>gi|87201067|ref|YP_498324.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Novosphingobium aromaticivorans DSM 12444]
 gi|115311787|sp|Q2G3T3|CLPP_NOVAD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|87136748|gb|ABD27490.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 235

 Score =  289 bits (740), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 131/207 (63%), Positives = 173/207 (83%)

Query: 2   SFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICA 61
           +F    K  ++ V   L+P+VVEQ++RGERS+DIYSRLL+ERI+FVTG++EDHMA++I A
Sbjct: 12  TFGNQGKFTTDPVTGALIPVVVEQSSRGERSFDIYSRLLRERIIFVTGEVEDHMASVIIA 71

Query: 62  QLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSA 121
           QLLFLE+ENP K+IS+YINSPGGVVTAG+AIYDTMQ+I+P +ST C+GQAASMGS LL+A
Sbjct: 72  QLLFLESENPSKDISMYINSPGGVVTAGLAIYDTMQYIRPRVSTVCIGQAASMGSFLLAA 131

Query: 122 GEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVE 181
           GE GMR ALPNARI++HQPSGG  G ASDIE  A++I++I++R+N++YVK  G++ +E+E
Sbjct: 132 GEPGMRIALPNARIMIHQPSGGARGMASDIEIQAREILRIRKRMNDLYVKFTGRSLDEIE 191

Query: 182 KTLDRDHIMSASEACDWGVVDKVLMSR 208
           K +DRD  + A EA  +G+VDKV  SR
Sbjct: 192 KAMDRDTFLEAEEAMKFGLVDKVFESR 218


>gi|284006421|emb|CBA71657.1| ATP-dependent Clp protease proteolytic subunit [Arsenophonus
           nasoniae]
          Length = 209

 Score =  289 bits (740), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 129/193 (66%), Positives = 162/193 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMV+EQT+RGERSYDIYSRLLKERI+F+TGQ+EDHMA L+ AQ+LFLEAENP K+I
Sbjct: 16  MALVPMVIEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLVVAQMLFLEAENPDKDI 75

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+AG KG R+ LPN+R+
Sbjct: 76  HLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLTAGAKGKRYCLPNSRV 135

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQASDIE HA++I+KIK R+NE+  K+ GK  +EVE   +RD  ++A EA
Sbjct: 136 MIHQPLGGFQGQASDIEIHAKEILKIKSRMNELMAKHTGKKIKEVENDTERDRFLTAEEA 195

Query: 196 CDWGVVDKVLMSR 208
             +G+VDK+  +R
Sbjct: 196 VSYGLVDKIYTNR 208


>gi|237707568|ref|ZP_04538049.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Escherichia
           sp. 3_2_53FAA]
 gi|226898778|gb|EEH85037.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Escherichia
           sp. 3_2_53FAA]
 gi|332103940|gb|EGJ07286.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Shigella sp.
           D9]
          Length = 227

 Score =  289 bits (739), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 129/208 (62%), Positives = 173/208 (83%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D+    + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 21  MSYSG--ERDNFAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIV 78

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 79  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 138

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+   + G++ E++
Sbjct: 139 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQI 198

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA EA ++G+VD +L  R
Sbjct: 199 ERDTERDRFLSAPEAVEYGLVDSILTHR 226


>gi|254485779|ref|ZP_05098984.1| Clp protease [Roseobacter sp. GAI101]
 gi|214042648|gb|EEB83286.1| Clp protease [Roseobacter sp. GAI101]
          Length = 215

 Score =  289 bits (739), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 130/198 (65%), Positives = 170/198 (85%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQT+RGER+YDI+SRLLKERI+F++G + D M++LI AQLL LEAENP KEIS+
Sbjct: 12  LVPMVVEQTSRGERAYDIFSRLLKERIIFLSGPVHDGMSSLIVAQLLHLEAENPSKEISM 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G++IYDTMQ+IKP +ST  +GQAASMGSLLL AGEKGMRF+LPN+R+++
Sbjct: 72  YINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLQAGEKGMRFSLPNSRVMV 131

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG+ GQA+DI  HAQ+  K+K RLNEIYVK+ G++ E+VE  L+RD+ MS  EA D
Sbjct: 132 HQPSGGYQGQATDIMIHAQETQKLKTRLNEIYVKHTGQSLEKVEAALERDNFMSPEEAKD 191

Query: 198 WGVVDKVLMSRIDIEEKS 215
           WG++D+++ +R  +++ S
Sbjct: 192 WGLIDEIVENRGKMDDPS 209


>gi|114767020|ref|ZP_01445928.1| Protease subunit of ATP-dependent Clp protease [Pelagibaca
           bermudensis HTCC2601]
 gi|114540804|gb|EAU43868.1| Protease subunit of ATP-dependent Clp protease [Roseovarius sp.
           HTCC2601]
          Length = 210

 Score =  289 bits (739), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 131/206 (63%), Positives = 174/206 (84%), Gaps = 1/206 (0%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           KD  + ++  LVPMVVEQT+RGER+YDI+SRLLKERI+FV+G + D M++LI AQLL LE
Sbjct: 2   KDPFETYMNTLVPMVVEQTSRGERAYDIFSRLLKERIIFVSGPVHDGMSSLIVAQLLHLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AENP KEIS+YINSPGGVVT+G++IYDTMQ+I+P +ST  +GQAASMGSLLL+AGE GMR
Sbjct: 62  AENPSKEISMYINSPGGVVTSGLSIYDTMQYIRPKVSTLVIGQAASMGSLLLTAGEAGMR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           F+LPN+RI++HQPSGG+ GQA+DI  HA++ +K+KRRLNEIYV++ G+T E VE  L+RD
Sbjct: 122 FSLPNSRIMVHQPSGGYQGQATDIMIHAEETLKLKRRLNEIYVRHTGQTLENVEAALERD 181

Query: 188 HIMSASEACDWGVVDKVLMSRIDIEE 213
           + M+  +A +WG++D+++ SR   EE
Sbjct: 182 NFMAPEDAKEWGLIDEIVESRGAAEE 207


>gi|170767754|ref|ZP_02902207.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           albertii TW07627]
 gi|170123242|gb|EDS92173.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           albertii TW07627]
          Length = 207

 Score =  289 bits (739), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 129/208 (62%), Positives = 173/208 (83%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D+    + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--ERDNLAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+   + G++ E++
Sbjct: 119 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA EA ++G+VD +L  R
Sbjct: 179 ERDTERDRFLSAPEAVEYGLVDSILTHR 206


>gi|288549991|ref|ZP_05968896.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterobacter
           cancerogenus ATCC 35316]
 gi|288316903|gb|EFC55841.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterobacter
           cancerogenus ATCC 35316]
          Length = 194

 Score =  289 bits (739), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 126/193 (65%), Positives = 166/193 (86%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI AQ+LFLEAENP+K+I
Sbjct: 1   MALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+AG KG RF LPN+R+
Sbjct: 61  YLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG+ GQA+DIE HA++I+K+K R+NE+  ++ G++ E++E+  +RD  +SA EA
Sbjct: 121 MIHQPLGGYQGQATDIEIHAREILKVKARMNELMAQHTGQSLEQIERDTERDRFLSAPEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD VL  R
Sbjct: 181 VEYGLVDSVLTHR 193


>gi|238759262|ref|ZP_04620429.1| ATP-dependent Clp protease proteolytic subunit [Yersinia aldovae
           ATCC 35236]
 gi|238702549|gb|EEP95099.1| ATP-dependent Clp protease proteolytic subunit [Yersinia aldovae
           ATCC 35236]
          Length = 194

 Score =  289 bits (739), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 128/193 (66%), Positives = 163/193 (84%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT+RGERSYDI+SRLLKERI+F+TGQ+EDHMA LI AQ+LFLEAENP+K+I
Sbjct: 1   MALVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDHMANLITAQMLFLEAENPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+AG KG RF LPN+R+
Sbjct: 61  FLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLTAGAKGKRFCLPNSRV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DIE HA++I+K+K R+NE+   + GK+ EE+E+  +RD  +SA +A
Sbjct: 121 MIHQPLGGFQGQATDIEIHAKEILKVKSRMNELMAHHTGKSLEEIERDTERDRFLSAQQA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD V   R
Sbjct: 181 VEYGLVDSVFTRR 193


>gi|197284027|ref|YP_002149899.1| ATP-dependent Clp protease proteolytic subunit [Proteus mirabilis
           HI4320]
 gi|226329068|ref|ZP_03804586.1| hypothetical protein PROPEN_02971 [Proteus penneri ATCC 35198]
 gi|227358102|ref|ZP_03842444.1| ATP-dependent Clp protease proteolytic subunit [Proteus mirabilis
           ATCC 29906]
 gi|226706465|sp|B4EU53|CLPP_PROMH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|194681514|emb|CAR40393.1| ATP-dependent Clp protease proteolytic subunit [Proteus mirabilis
           HI4320]
 gi|225202254|gb|EEG84608.1| hypothetical protein PROPEN_02971 [Proteus penneri ATCC 35198]
 gi|227161837|gb|EEI46869.1| ATP-dependent Clp protease proteolytic subunit [Proteus mirabilis
           ATCC 29906]
          Length = 207

 Score =  289 bits (739), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 132/211 (62%), Positives = 173/211 (81%), Gaps = 8/211 (3%)

Query: 1   MSFEGCAKKDSEDVF---LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMAT 57
           MSF      D+++ F   + LVPMV+EQT+RGERSYDIYSRLLKERI+F+TGQ+EDHMA 
Sbjct: 1   MSF-----NDTQEQFAPNMALVPMVIEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMAN 55

Query: 58  LICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSL 117
           LI AQ+LFLEAENP+K+I+LYINSPGGV+TAGM+IYDTMQ+IK  +ST CMGQA SMG+ 
Sbjct: 56  LIVAQMLFLEAENPEKDINLYINSPGGVITAGMSIYDTMQYIKADVSTICMGQACSMGAF 115

Query: 118 LLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTY 177
           LLSAG KG R  LPN+R+++HQP GG+ GQA+DI+ HAQ+I+K+K R+NE+  ++ GK+ 
Sbjct: 116 LLSAGAKGKRICLPNSRVMIHQPLGGYQGQATDIQIHAQEILKVKSRMNELMAQHTGKSI 175

Query: 178 EEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           EE+E+  +RD  +SA+EA ++G+VDKV   R
Sbjct: 176 EEIERDTERDRFLSANEALEYGLVDKVYTQR 206


>gi|238788008|ref|ZP_04631804.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
           frederiksenii ATCC 33641]
 gi|238723956|gb|EEQ15600.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
           frederiksenii ATCC 33641]
          Length = 194

 Score =  289 bits (739), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 128/193 (66%), Positives = 163/193 (84%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT+RGERSYDI+SRLLKERI+F+TGQ+EDHMA LI AQ+LFLEAENP+K+I
Sbjct: 1   MALVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDHMANLITAQMLFLEAENPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+AG KG RF LPN+R+
Sbjct: 61  FLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLTAGAKGKRFCLPNSRV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DIE HA++I+K+K R+NE+   + GK+ EE+E+  +RD  +SA +A
Sbjct: 121 MIHQPLGGFQGQATDIEIHAKEILKVKSRMNELMAHHTGKSLEEIERDTERDRFLSAEQA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD V   R
Sbjct: 181 VEYGLVDSVFTRR 193


>gi|15800167|ref|NP_286179.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O157:H7 EDL933]
 gi|15829745|ref|NP_308518.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O157:H7 str. Sakai]
 gi|16128422|ref|NP_414971.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli str. K-12 substr. MG1655]
 gi|26246448|ref|NP_752487.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           CFT073]
 gi|30061939|ref|NP_836110.1| ATP-dependent Clp protease proteolytic subunit [Shigella flexneri
           2a str. 2457T]
 gi|56479658|ref|NP_706331.2| ATP-dependent Clp protease proteolytic subunit [Shigella flexneri
           2a str. 301]
 gi|74311012|ref|YP_309431.1| ATP-dependent Clp protease proteolytic subunit [Shigella sonnei
           Ss046]
 gi|82542925|ref|YP_406872.1| ATP-dependent Clp protease proteolytic subunit [Shigella boydii
           Sb227]
 gi|82775656|ref|YP_402003.1| ATP-dependent Clp protease proteolytic subunit [Shigella
           dysenteriae Sd197]
 gi|89107307|ref|AP_001087.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli str. K-12 substr. W3110]
 gi|91209511|ref|YP_539497.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           UTI89]
 gi|110640698|ref|YP_668426.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           536]
 gi|110804465|ref|YP_687985.1| ATP-dependent Clp protease proteolytic subunit [Shigella flexneri 5
           str. 8401]
 gi|117622697|ref|YP_851610.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           APEC O1]
 gi|157158299|ref|YP_001461624.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           E24377A]
 gi|157159964|ref|YP_001457282.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           HS]
 gi|168754541|ref|ZP_02779548.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. EC4401]
 gi|168768391|ref|ZP_02793398.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. EC4486]
 gi|168778128|ref|ZP_02803135.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. EC4196]
 gi|168778929|ref|ZP_02803936.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. EC4076]
 gi|168786287|ref|ZP_02811294.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. EC869]
 gi|170021190|ref|YP_001726144.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           ATCC 8739]
 gi|170080023|ref|YP_001729343.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli str. K-12 substr. DH10B]
 gi|170683276|ref|YP_001742581.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           SMS-3-5]
 gi|187731303|ref|YP_001879148.1| ATP-dependent Clp protease proteolytic subunit [Shigella boydii CDC
           3083-94]
 gi|188492597|ref|ZP_02999867.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli 53638]
 gi|191174674|ref|ZP_03036146.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli F11]
 gi|193064129|ref|ZP_03045213.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli E22]
 gi|195938496|ref|ZP_03083878.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O157:H7 str. EC4024]
 gi|208809540|ref|ZP_03251877.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. EC4206]
 gi|208815859|ref|ZP_03257038.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. EC4045]
 gi|208822964|ref|ZP_03263282.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. EC4042]
 gi|209917654|ref|YP_002291738.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           SE11]
 gi|215485518|ref|YP_002327949.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O127:H6 str. E2348/69]
 gi|217326412|ref|ZP_03442496.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. TW14588]
 gi|218549895|ref|YP_002383686.1| ATP-dependent Clp protease proteolytic subunit [Escherichia
           fergusonii ATCC 35469]
 gi|218553004|ref|YP_002385917.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           IAI1]
 gi|218557347|ref|YP_002390260.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           S88]
 gi|218688301|ref|YP_002396513.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           ED1a]
 gi|218693900|ref|YP_002401567.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           55989]
 gi|218698651|ref|YP_002406280.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           IAI39]
 gi|218703721|ref|YP_002411240.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           UMN026]
 gi|227884552|ref|ZP_04002357.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           83972]
 gi|238899725|ref|YP_002925521.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli BW2952]
 gi|253774574|ref|YP_003037405.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160506|ref|YP_003043614.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli B
           str. REL606]
 gi|254791621|ref|YP_003076458.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O157:H7 str. TW14359]
 gi|256020408|ref|ZP_05434273.1| ATP-dependent Clp protease proteolytic subunit [Shigella sp. D9]
 gi|256023945|ref|ZP_05437810.1| ATP-dependent Clp protease proteolytic subunit [Escherichia sp.
           4_1_40B]
 gi|260842638|ref|YP_003220416.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O103:H2 str. 12009]
 gi|260853660|ref|YP_003227551.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O26:H11 str. 11368]
 gi|260866598|ref|YP_003233000.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O111:H- str. 11128]
 gi|261223919|ref|ZP_05938200.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256367|ref|ZP_05948900.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291281344|ref|YP_003498162.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O55:H7 str. CB9615]
 gi|293403558|ref|ZP_06647649.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           FVEC1412]
 gi|293408587|ref|ZP_06652426.1| Clp protease [Escherichia coli B354]
 gi|297516115|ref|ZP_06934501.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           OP50]
 gi|298379170|ref|ZP_06989051.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           FVEC1302]
 gi|300818231|ref|ZP_07098442.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 107-1]
 gi|300820317|ref|ZP_07100469.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 119-7]
 gi|300903295|ref|ZP_07121223.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 84-1]
 gi|300918180|ref|ZP_07134787.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 115-1]
 gi|300930260|ref|ZP_07145673.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 187-1]
 gi|300947910|ref|ZP_07162058.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 116-1]
 gi|301025667|ref|ZP_07189185.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 196-1]
 gi|301330696|ref|ZP_07223298.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 78-1]
 gi|306813096|ref|ZP_07447289.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           NC101]
 gi|307137081|ref|ZP_07496437.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           H736]
 gi|307312185|ref|ZP_07591821.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli W]
 gi|309794830|ref|ZP_07689251.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 145-7]
 gi|331640957|ref|ZP_08342092.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli H736]
 gi|331645613|ref|ZP_08346717.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli M605]
 gi|331651375|ref|ZP_08352400.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli M718]
 gi|331656494|ref|ZP_08357456.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli TA206]
 gi|331661818|ref|ZP_08362741.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli TA143]
 gi|331666792|ref|ZP_08367666.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli TA271]
 gi|331671984|ref|ZP_08372780.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli TA280]
 gi|331676109|ref|ZP_08376821.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli H591]
 gi|331681832|ref|ZP_08382465.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli H299]
 gi|62288033|sp|P0A6G7|CLPP_ECOLI RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Caseinolytic protease; AltName:
           Full=Endopeptidase Clp; AltName: Full=Heat shock protein
           F21.5; AltName: Full=Protease Ti; Flags: Precursor
 gi|62288034|sp|P0A6G8|CLPP_ECOL6 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp; Flags: Precursor
 gi|62288035|sp|P0A6G9|CLPP_ECO57 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp; Flags: Precursor
 gi|62288036|sp|P0A6H0|CLPP_SHIFL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|90183183|sp|Q325G4|CLPP_SHIBS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|90183184|sp|Q32JJ3|CLPP_SHIDS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|110816465|sp|Q3Z4W6|CLPP_SHISS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|116243134|sp|Q0TKK4|CLPP_ECOL5 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp; Flags: Precursor
 gi|116243136|sp|Q1RF98|CLPP_ECOUT RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp; Flags: Precursor
 gi|122957620|sp|Q0T7E6|CLPP_SHIF8 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166201821|sp|A1A8A6|CLPP_ECOK1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|167008648|sp|A7ZIJ5|CLPP_ECO24 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|167008649|sp|A7ZX95|CLPP_ECOHS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|189082457|sp|B1J011|CLPP_ECOLC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|310942734|pdb|3MT6|R Chain R, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942735|pdb|3MT6|S Chain S, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942736|pdb|3MT6|T Chain T, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942737|pdb|3MT6|U Chain U, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942738|pdb|3MT6|O Chain O, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942739|pdb|3MT6|P Chain P, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942740|pdb|3MT6|Q Chain Q, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942741|pdb|3MT6|Y Chain Y, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942742|pdb|3MT6|Z Chain Z, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942743|pdb|3MT6|AA Chain a, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942744|pdb|3MT6|BB Chain b, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942745|pdb|3MT6|V Chain V, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942746|pdb|3MT6|W Chain W, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942747|pdb|3MT6|X Chain X, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942748|pdb|3MT6|M Chain M, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942749|pdb|3MT6|L Chain L, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942750|pdb|3MT6|K Chain K, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942751|pdb|3MT6|J Chain J, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942752|pdb|3MT6|I Chain I, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942753|pdb|3MT6|H Chain H, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942754|pdb|3MT6|N Chain N, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942755|pdb|3MT6|F Chain F, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942756|pdb|3MT6|E Chain E, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942757|pdb|3MT6|D Chain D, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942758|pdb|3MT6|C Chain C, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942759|pdb|3MT6|B Chain B, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942760|pdb|3MT6|A Chain A, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942761|pdb|3MT6|G Chain G, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|12513299|gb|AAG54787.1|AE005223_2 ATP-dependent proteolytic subunit of clpA-clpP serine protease,
           heat shock protein F21.5 [Escherichia coli O157:H7 str.
           EDL933]
 gi|26106846|gb|AAN79031.1|AE016756_214 ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           CFT073]
 gi|145556|gb|AAA23588.1| ATP-dependent protease (clpP) [Escherichia coli]
 gi|1773121|gb|AAB40193.1| ATP-dependent Clp proteinase [Escherichia coli]
 gi|1786641|gb|AAC73540.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli str. K-12 substr. MG1655]
 gi|13359948|dbj|BAB33914.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease ClpP
           [Escherichia coli O157:H7 str. Sakai]
 gi|30040183|gb|AAP15916.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease,
           heat shock protein F21.5 [Shigella flexneri 2a str.
           2457T]
 gi|56383209|gb|AAN42038.2| ATP-dependent proteolytic subunit of clpA-clpP serine protease,
           heat shock protein F21.5 [Shigella flexneri 2a str. 301]
 gi|73854489|gb|AAZ87196.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease
           [Shigella sonnei Ss046]
 gi|81239804|gb|ABB60514.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease
           [Shigella dysenteriae Sd197]
 gi|81244336|gb|ABB65044.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease
           [Shigella boydii Sb227]
 gi|85674577|dbj|BAE76217.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli str. K12 substr. W3110]
 gi|91071085|gb|ABE05966.1| ATP-dependent proteolytic subunit of clpA-ClpP serine protease,
           heat shock protein F21.5 [Escherichia coli UTI89]
 gi|110342290|gb|ABG68527.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           536]
 gi|110614013|gb|ABF02680.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease
           [Shigella flexneri 5 str. 8401]
 gi|115511821|gb|ABI99895.1| ATP-dependent proteolytic subunit of ClpA-ClpP serine protease
           [Escherichia coli APEC O1]
 gi|157065644|gb|ABV04899.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli HS]
 gi|157080329|gb|ABV20037.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli E24377A]
 gi|169756118|gb|ACA78817.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli ATCC 8739]
 gi|169887858|gb|ACB01565.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli str. K-12 substr. DH10B]
 gi|170520994|gb|ACB19172.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli SMS-3-5]
 gi|187428295|gb|ACD07569.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shigella
           boydii CDC 3083-94]
 gi|187766815|gb|EDU30659.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. EC4196]
 gi|188487796|gb|EDU62899.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli 53638]
 gi|189003087|gb|EDU72073.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. EC4076]
 gi|189358046|gb|EDU76465.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. EC4401]
 gi|189362475|gb|EDU80894.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. EC4486]
 gi|189373600|gb|EDU92016.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. EC869]
 gi|190905047|gb|EDV64714.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli F11]
 gi|192929158|gb|EDV82768.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli E22]
 gi|208729341|gb|EDZ78942.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. EC4206]
 gi|208732507|gb|EDZ81195.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. EC4045]
 gi|208737157|gb|EDZ84841.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. EC4042]
 gi|209743854|gb|ACI70234.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease ClpP
           [Escherichia coli]
 gi|209743856|gb|ACI70235.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease ClpP
           [Escherichia coli]
 gi|209743858|gb|ACI70236.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease ClpP
           [Escherichia coli]
 gi|209743860|gb|ACI70237.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease ClpP
           [Escherichia coli]
 gi|209743862|gb|ACI70238.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease ClpP
           [Escherichia coli]
 gi|209910913|dbj|BAG75987.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           SE11]
 gi|215263590|emb|CAS07920.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli O127:H6 str. E2348/69]
 gi|217322633|gb|EEC31057.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. TW14588]
 gi|218350632|emb|CAU96324.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli 55989]
 gi|218357436|emb|CAQ90075.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia fergusonii ATCC 35469]
 gi|218359772|emb|CAQ97313.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli IAI1]
 gi|218364116|emb|CAR01781.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli S88]
 gi|218368637|emb|CAR16376.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli IAI39]
 gi|218425865|emb|CAR06671.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli ED1a]
 gi|218430818|emb|CAR11692.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli UMN026]
 gi|222032232|emb|CAP74971.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           LF82]
 gi|227838638|gb|EEJ49104.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           83972]
 gi|238863325|gb|ACR65323.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli BW2952]
 gi|242376218|emb|CAQ30909.1| clpP, subunit of ClpP serine protease, ClpAP, ClpXP and ClpAXP
           [Escherichia coli BL21(DE3)]
 gi|253325618|gb|ACT30220.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|253972407|gb|ACT38078.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli B
           str. REL606]
 gi|253976617|gb|ACT42287.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           BL21(DE3)]
 gi|254591021|gb|ACT70382.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli O157:H7 str. TW14359]
 gi|257752309|dbj|BAI23811.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O26:H11 str. 11368]
 gi|257757785|dbj|BAI29282.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O103:H2 str. 12009]
 gi|257762954|dbj|BAI34449.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O111:H- str. 11128]
 gi|260450376|gb|ACX40798.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli DH1]
 gi|281177608|dbj|BAI53938.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           SE15]
 gi|281599777|gb|ADA72761.1| ATP-dependent Clp protease proteolytic subunit [Shigella flexneri
           2002017]
 gi|284920247|emb|CBG33306.1| ATP-dependent clp protease proteolytic subunit [Escherichia coli
           042]
 gi|290761217|gb|ADD55178.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O55:H7 str. CB9615]
 gi|291429411|gb|EFF02431.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           FVEC1412]
 gi|291471765|gb|EFF14248.1| Clp protease [Escherichia coli B354]
 gi|294492533|gb|ADE91289.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli IHE3034]
 gi|298280283|gb|EFI21787.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           FVEC1302]
 gi|299880021|gb|EFI88232.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 196-1]
 gi|300404590|gb|EFJ88128.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 84-1]
 gi|300414631|gb|EFJ97941.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 115-1]
 gi|300452510|gb|EFK16130.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 116-1]
 gi|300461832|gb|EFK25325.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 187-1]
 gi|300527102|gb|EFK48171.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 119-7]
 gi|300529122|gb|EFK50184.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 107-1]
 gi|300843357|gb|EFK71117.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 78-1]
 gi|305853859|gb|EFM54298.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           NC101]
 gi|306907687|gb|EFN38189.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli W]
 gi|307552344|gb|ADN45119.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           ABU 83972]
 gi|307628093|gb|ADN72397.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           UM146]
 gi|308121483|gb|EFO58745.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 145-7]
 gi|309700698|emb|CBI99994.1| ATP-dependent clp protease proteolytic subunit [Escherichia coli
           ETEC H10407]
 gi|312945015|gb|ADR25842.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|315059717|gb|ADT74044.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli W]
 gi|315135119|dbj|BAJ42278.1| conserved hypothetical protein [Escherichia coli DH1]
 gi|320173743|gb|EFW48926.1| ATP-dependent Clp protease proteolytic subunit [Shigella
           dysenteriae CDC 74-1112]
 gi|320178281|gb|EFW53255.1| ATP-dependent Clp protease proteolytic subunit [Shigella boydii
           ATCC 9905]
 gi|320186067|gb|EFW60812.1| ATP-dependent Clp protease proteolytic subunit [Shigella flexneri
           CDC 796-83]
 gi|320192853|gb|EFW67493.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O157:H7 str. EC1212]
 gi|320197089|gb|EFW71708.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           WV_060327]
 gi|320201681|gb|EFW76257.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           EC4100B]
 gi|320638432|gb|EFX08146.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O157:H7 str. G5101]
 gi|320643812|gb|EFX12935.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O157:H- str. 493-89]
 gi|320649163|gb|EFX17741.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O157:H- str. H 2687]
 gi|320656056|gb|EFX23972.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320661206|gb|EFX28637.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320665182|gb|EFX32275.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323379718|gb|ADX51986.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli KO11]
 gi|323938623|gb|EGB34872.1| Clp protease [Escherichia coli E1520]
 gi|323943244|gb|EGB39400.1| Clp protease [Escherichia coli E482]
 gi|323945342|gb|EGB41398.1| Clp protease [Escherichia coli H120]
 gi|323952951|gb|EGB48819.1| Clp protease [Escherichia coli H252]
 gi|323958630|gb|EGB54333.1| Clp protease [Escherichia coli H263]
 gi|323963427|gb|EGB58989.1| Clp protease [Escherichia coli H489]
 gi|323965124|gb|EGB60583.1| Clp protease [Escherichia coli M863]
 gi|323972291|gb|EGB67501.1| Clp protease [Escherichia coli TA007]
 gi|323976078|gb|EGB71171.1| Clp protease [Escherichia coli TW10509]
 gi|324114664|gb|EGC08632.1| Clp protease [Escherichia fergusonii B253]
 gi|324116925|gb|EGC10838.1| Clp protease [Escherichia coli E1167]
 gi|326341201|gb|EGD64993.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O157:H7 str. 1044]
 gi|326346024|gb|EGD69763.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O157:H7 str. 1125]
 gi|330910231|gb|EGH38741.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           AA86]
 gi|331037755|gb|EGI09975.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli H736]
 gi|331045775|gb|EGI17901.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli M605]
 gi|331051116|gb|EGI23168.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli M718]
 gi|331054742|gb|EGI26751.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli TA206]
 gi|331060240|gb|EGI32204.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli TA143]
 gi|331066016|gb|EGI37900.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli TA271]
 gi|331070973|gb|EGI42332.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli TA280]
 gi|331076167|gb|EGI47449.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli H591]
 gi|331081034|gb|EGI52199.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli H299]
          Length = 207

 Score =  288 bits (738), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 129/208 (62%), Positives = 173/208 (83%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D+    + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--ERDNFAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+   + G++ E++
Sbjct: 119 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA EA ++G+VD +L  R
Sbjct: 179 ERDTERDRFLSAPEAVEYGLVDSILTHR 206


>gi|300721991|ref|YP_003711271.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
           [Xenorhabdus nematophila ATCC 19061]
 gi|297628488|emb|CBJ89055.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
           [Xenorhabdus nematophila ATCC 19061]
          Length = 207

 Score =  288 bits (738), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 131/208 (62%), Positives = 170/208 (81%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  K+D     + LVPMVVEQT RGER++DIYSRLLK+RI+F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--KQDQYAPNMSLVPMVVEQTARGERAFDIYSRLLKDRIIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMGS LL+
Sbjct: 59  AQMLFLEAENPEKDIHLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGSFLLA 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG +G RF LPN+R+++HQP GGF GQA+DI+ HAQ+I+K+K R+NE+  K+ G+  +++
Sbjct: 119 AGAEGKRFCLPNSRVMIHQPLGGFQGQATDIQIHAQEILKVKARMNELMAKHTGQPLDKI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SASEA D+G+VD +   R
Sbjct: 179 EEDTERDRFLSASEAVDYGLVDSIFTQR 206


>gi|238764860|ref|ZP_04625801.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
           kristensenii ATCC 33638]
 gi|238696967|gb|EEP89743.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
           kristensenii ATCC 33638]
          Length = 207

 Score =  288 bits (738), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 132/208 (63%), Positives = 170/208 (81%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D     + LVPMVVEQT+RGERSYDI+SRLLKERI+F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--ERDQFAPNMALVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDHMANLIT 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIFLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GGF GQA+DIE HA++I+K+K R+NE+   + GK+ EE+
Sbjct: 119 AGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAREILKVKSRMNELMALHTGKSLEEI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA +A ++G+VD V   R
Sbjct: 179 ERDTERDRFLSAEQAVEYGLVDSVFTRR 206


>gi|238783609|ref|ZP_04627630.1| ATP-dependent Clp protease proteolytic subunit [Yersinia bercovieri
           ATCC 43970]
 gi|238715487|gb|EEQ07478.1| ATP-dependent Clp protease proteolytic subunit [Yersinia bercovieri
           ATCC 43970]
          Length = 207

 Score =  288 bits (738), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 133/208 (63%), Positives = 169/208 (81%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D     + LVPMVVEQT+RGERSYDI+SRLLKERI+F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--ERDQFAPNMALVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDHMANLIT 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIFLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GGF GQA+DIE HA++I+K+K R+NE+   + GK+ EE+
Sbjct: 119 AGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAREILKVKSRMNELMALHTGKSLEEI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA EA  +G+VD V   R
Sbjct: 179 ERDTERDRFLSAEEAVGYGLVDSVFTRR 206


>gi|83954269|ref|ZP_00962989.1| Protease subunit of ATP-dependent Clp protease [Sulfitobacter sp.
           NAS-14.1]
 gi|83841306|gb|EAP80476.1| Protease subunit of ATP-dependent Clp protease [Sulfitobacter sp.
           NAS-14.1]
          Length = 219

 Score =  288 bits (738), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 131/200 (65%), Positives = 168/200 (84%), Gaps = 1/200 (0%)

Query: 10  DSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           D  D ++  LVPMVVEQT+RGER+YDI+SRLLKERI+F+ G + D M++LI AQLL LEA
Sbjct: 3   DPHDTYMNTLVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMSSLIVAQLLHLEA 62

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP KEIS+YINSPGGVVT+G++IYDTMQ+IKP +ST  +GQAASMGSLLL AGEKGMRF
Sbjct: 63  ENPSKEISMYINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLQAGEKGMRF 122

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPN+R+++HQPSGG+ GQA+DI  HAQ+  K+K RLNEIYVK+ G+  E+VE  L+RD+
Sbjct: 123 SLPNSRVMVHQPSGGYQGQATDIMIHAQETQKLKTRLNEIYVKHTGQPLEKVEAALERDN 182

Query: 189 IMSASEACDWGVVDKVLMSR 208
            MS  EA DWG++D+++ +R
Sbjct: 183 FMSPEEAKDWGLIDEIVENR 202


>gi|183601061|ref|ZP_02962554.1| hypothetical protein PROSTU_04684 [Providencia stuartii ATCC 25827]
 gi|188019401|gb|EDU57441.1| hypothetical protein PROSTU_04684 [Providencia stuartii ATCC 25827]
          Length = 206

 Score =  288 bits (738), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 128/193 (66%), Positives = 163/193 (84%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMV+EQT+RGERSYDIYSRLLKERI+F+TGQ+EDHMA LI AQ+LFLEAENP+K+I
Sbjct: 14  MALVPMVIEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAENPEKDI 73

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMGS LL+AG KG RF LPN+R+
Sbjct: 74  QLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGSFLLAAGTKGKRFCLPNSRV 133

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG+ GQA+DI+ HAQ+I+K+K R+NE+   + GK+ EE+ +  +RD  +SA EA
Sbjct: 134 MIHQPLGGYQGQATDIQIHAQEILKVKTRMNELMALHTGKSVEEINRDTERDRFLSADEA 193

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD +  SR
Sbjct: 194 KEYGLVDHIYTSR 206


>gi|270263570|ref|ZP_06191839.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Serratia
           odorifera 4Rx13]
 gi|270042454|gb|EFA15549.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Serratia
           odorifera 4Rx13]
          Length = 207

 Score =  288 bits (738), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 131/208 (62%), Positives = 172/208 (82%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D     + LVPMVVEQT+RGERSYDIYSRLLKERI+F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--ERDQFAPNMALVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAE+P+K+I LYINSPGGV+TAGM+IYDTM+FIKP +ST CMGQA SMGS LL+
Sbjct: 59  AQMLFLEAESPEKDIYLYINSPGGVITAGMSIYDTMKFIKPDVSTICMGQACSMGSFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+  ++ G+T E++
Sbjct: 119 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKARMNELMAEHTGQTLEQI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  M+A EA ++G+VD +L  R
Sbjct: 179 ERDTERDRFMTAEEAVEYGLVDGILTHR 206


>gi|85704731|ref|ZP_01035832.1| Protease subunit of ATP-dependent Clp protease [Roseovarius sp.
           217]
 gi|85670549|gb|EAQ25409.1| Protease subunit of ATP-dependent Clp protease [Roseovarius sp.
           217]
          Length = 210

 Score =  288 bits (737), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 130/209 (62%), Positives = 176/209 (84%), Gaps = 1/209 (0%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           KD  D+++  LVPMVVEQT+RGER+YDI+SRLLKERI+F++G + D M++LI AQLL LE
Sbjct: 2   KDPMDIYMNTLVPMVVEQTSRGERAYDIFSRLLKERIIFLSGPVHDGMSSLIVAQLLHLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AENP KEIS+YINSPGGVVT+G++IYDTMQ+IKP +ST  +GQAASMGSLLL+AGE GMR
Sbjct: 62  AENPSKEISMYINSPGGVVTSGLSIYDTMQYIKPKVSTLVVGQAASMGSLLLTAGEPGMR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           F+LPN+R+++HQPSGG+ GQA+DI  HA++  K+K RLNEIYV++ G+T ++VE+ L+RD
Sbjct: 122 FSLPNSRVMVHQPSGGYQGQATDIMIHARETQKLKDRLNEIYVRHTGQTLKKVEEALERD 181

Query: 188 HIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           + MS  EA  WG++D+++ +R  ++E  K
Sbjct: 182 NFMSPDEAKAWGLIDEIVANRDKVDEAKK 210


>gi|83592885|ref|YP_426637.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rhodospirillum
           rubrum ATCC 11170]
 gi|124013826|sp|Q2RU45|CLPP_RHORT RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|83575799|gb|ABC22350.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rhodospirillum
           rubrum ATCC 11170]
          Length = 216

 Score =  288 bits (737), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 134/201 (66%), Positives = 167/201 (83%), Gaps = 1/201 (0%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           +D  DVF   LVPMVVEQTNRGERSYDIYSRLLKERI+F+TGQ+ D +A+LICAQLLFLE
Sbjct: 4   RDPIDVFNNTLVPMVVEQTNRGERSYDIYSRLLKERIIFLTGQVHDGVASLICAQLLFLE 63

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           +ENP K+IS YINSPGGVVT+GMAIYDTMQ+I+ P+ST C+GQAASMGSLLL AGE G R
Sbjct: 64  SENPSKDISFYINSPGGVVTSGMAIYDTMQYIRSPVSTVCIGQAASMGSLLLCAGEAGKR 123

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           +A PNARI++HQPSGGF GQA+DIE  A++I+ ++ RLN IYVK+ G+  E +E+ +DRD
Sbjct: 124 YATPNARIMIHQPSGGFQGQAADIEIQAREILALRERLNRIYVKHTGQPLETIERAMDRD 183

Query: 188 HIMSASEACDWGVVDKVLMSR 208
           + M+A E+  +G+ D V+  R
Sbjct: 184 NYMTAEESRAFGLTDSVIERR 204


>gi|56414396|ref|YP_151471.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197363316|ref|YP_002142953.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|67460194|sp|Q5PFN4|CLPP_SALPA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp; Flags: Precursor
 gi|226706471|sp|B5BD83|CLPP_SALPK RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|56128653|gb|AAV78159.1| ATP-dependent clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197094793|emb|CAR60326.1| ATP-dependent clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
          Length = 207

 Score =  288 bits (737), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 128/208 (61%), Positives = 173/208 (83%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D+    + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--ERDNLAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAG++IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIYLYINSPGGVITAGISIYDTMQFIKPDVSTICMGQAASMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+   + G++ E++
Sbjct: 119 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA EA ++G+VD +L  R
Sbjct: 179 ERDTERDRFLSAPEAVEYGLVDSILTHR 206


>gi|205351759|ref|YP_002225560.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205271540|emb|CAR36358.1| ATP-dependent clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
          Length = 207

 Score =  288 bits (737), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 129/208 (62%), Positives = 172/208 (82%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  + D+    + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--ELDNLAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+   + G++ E++
Sbjct: 119 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA EA ++G+VD +L  R
Sbjct: 179 ERDTERDRFLSAPEAVEYGLVDSILTHR 206


>gi|152968972|ref|YP_001334081.1| ATP-dependent Clp protease proteolytic subunit [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|262042473|ref|ZP_06015632.1| ATP-dependent Clp protease [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330011533|ref|ZP_08307119.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Klebsiella sp. MS 92-3]
 gi|150953821|gb|ABR75851.1| ATP-dependent Clp protease proteolytic subunit [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|259040177|gb|EEW41289.1| ATP-dependent Clp protease [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328534150|gb|EGF60785.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Klebsiella sp. MS 92-3]
          Length = 194

 Score =  288 bits (737), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 125/193 (64%), Positives = 166/193 (86%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI AQ+LFLEAENP+K+I
Sbjct: 1   MALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+AG KG RF LPN+R+
Sbjct: 61  YLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG+ GQA+DIE HA++I+K+K R+NE+   + G++ E++E+  +RD  +SA+EA
Sbjct: 121 MIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAAEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD +L  R
Sbjct: 181 VEYGLVDSILTHR 193


>gi|261822507|ref|YP_003260613.1| ATP-dependent Clp protease proteolytic subunit [Pectobacterium
           wasabiae WPP163]
 gi|261606520|gb|ACX89006.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Pectobacterium wasabiae WPP163]
          Length = 207

 Score =  288 bits (737), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 130/208 (62%), Positives = 171/208 (82%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  +++ +   + LVPMVVEQT+RGERSYDIYSRLLKERI+F+TGQ+EDHMA L+ 
Sbjct: 1   MSYSG--EQERQAPHMALVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLVV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG R  LPN+R+++HQP GGF GQA+DIE HA++I+K+K ++NE+  K+ G+  E +
Sbjct: 119 AGAKGKRICLPNSRVMIHQPLGGFQGQATDIEIHAKEILKVKAKMNELMAKHTGQPLEAI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SASEA ++G+VD V  +R
Sbjct: 179 ERDTERDRFLSASEAVEYGLVDSVFTNR 206


>gi|311280666|ref|YP_003942897.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterobacter
           cloacae SCF1]
 gi|308749861|gb|ADO49613.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterobacter
           cloacae SCF1]
          Length = 207

 Score =  288 bits (736), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 128/208 (61%), Positives = 172/208 (82%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D+    + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--ERDNFAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+  ++ G++  ++
Sbjct: 119 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKARMNELMAQHTGQSLAQI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E   +RD  +SA EA ++G+VD +L  R
Sbjct: 179 ESDTERDRFLSAPEAVEYGLVDSILTHR 206


>gi|238795542|ref|ZP_04639057.1| ATP-dependent Clp protease proteolytic subunit [Yersinia mollaretii
           ATCC 43969]
 gi|238720661|gb|EEQ12462.1| ATP-dependent Clp protease proteolytic subunit [Yersinia mollaretii
           ATCC 43969]
          Length = 194

 Score =  288 bits (736), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 129/193 (66%), Positives = 162/193 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT+RGERSYDI+SRLLKERI+F+TGQ+EDHMA LI AQ+LFLEAENP+K+I
Sbjct: 1   MALVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDHMANLITAQMLFLEAENPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+AG KG RF LPN+R+
Sbjct: 61  FLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLTAGAKGKRFCLPNSRV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DIE HA++I+K+K R+NE+   + GK+ EE+E+  +RD  +SA EA
Sbjct: 121 MIHQPLGGFQGQATDIEIHAREILKVKSRMNELMALHTGKSLEEIERDTERDRFLSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD V   R
Sbjct: 181 VGYGLVDSVFTRR 193


>gi|157369338|ref|YP_001477327.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Serratia
           proteamaculans 568]
 gi|157321102|gb|ABV40199.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Serratia
           proteamaculans 568]
          Length = 207

 Score =  288 bits (736), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 131/208 (62%), Positives = 172/208 (82%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D     + LVPMVVEQT+RGERSYDIYSRLLKERI+F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--ERDQFAPNMALVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAE+P+K+I LYINSPGGV+TAGM+IYDTM+FIKP +ST CMGQA SMGS LL+
Sbjct: 59  AQMLFLEAESPEKDIFLYINSPGGVITAGMSIYDTMKFIKPDVSTICMGQACSMGSFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+  ++ G+T E++
Sbjct: 119 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKARMNELMAEHTGQTLEQI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  M+A EA ++G+VD +L  R
Sbjct: 179 ERDTERDRFMTAEEAVEYGLVDGILTHR 206


>gi|326626794|gb|EGE33137.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 246

 Score =  288 bits (736), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 129/208 (62%), Positives = 172/208 (82%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  + D+    + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 40  MSYSG--ELDNLAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIV 97

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 98  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 157

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+   + G++ E++
Sbjct: 158 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQI 217

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA EA ++G+VD +L  R
Sbjct: 218 ERDTERDRFLSAPEAVEYGLVDSILTHR 245


>gi|22124934|ref|NP_668357.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pestis KIM
           10]
 gi|45440623|ref|NP_992162.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51595309|ref|YP_069500.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
           pseudotuberculosis IP 32953]
 gi|108808643|ref|YP_652559.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pestis
           Antiqua]
 gi|108811098|ref|YP_646865.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pestis
           Nepal516]
 gi|145600052|ref|YP_001164128.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pestis
           Pestoides F]
 gi|149364997|ref|ZP_01887032.1| ATP-dependent Clp protease proteolytic subunit ClpP [Yersinia
           pestis CA88-4125]
 gi|153950622|ref|YP_001402052.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
           pseudotuberculosis IP 31758]
 gi|162419837|ref|YP_001607420.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pestis
           Angola]
 gi|165926613|ref|ZP_02222445.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165935884|ref|ZP_02224454.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|166010967|ref|ZP_02231865.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166212961|ref|ZP_02238996.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167398957|ref|ZP_02304481.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167421692|ref|ZP_02313445.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167423463|ref|ZP_02315216.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|170025451|ref|YP_001721956.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
           pseudotuberculosis YPIII]
 gi|186894326|ref|YP_001871438.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
           pseudotuberculosis PB1/+]
 gi|218930187|ref|YP_002348062.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pestis
           CO92]
 gi|229838761|ref|ZP_04458920.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229896085|ref|ZP_04511255.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Yersinia pestis Pestoides A]
 gi|229899329|ref|ZP_04514472.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229901327|ref|ZP_04516449.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Yersinia pestis Nepal516]
 gi|270489513|ref|ZP_06206587.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis KIM D27]
 gi|294504888|ref|YP_003568950.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pestis
           Z176003]
 gi|21759072|sp|Q8ZC65|CLPP_YERPE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|60389537|sp|Q66DT4|CLPP_YERPS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|122980282|sp|Q1CL65|CLPP_YERPN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|123072666|sp|Q1C4K8|CLPP_YERPA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166214723|sp|A4TPE3|CLPP_YERPP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|167008652|sp|A7FLC4|CLPP_YERP3 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|21957773|gb|AAM84608.1|AE013706_3 ATP-dependent proteolytic subunit of clpA-clpP serine protease,
           heat shock protein F21.5 [Yersinia pestis KIM 10]
 gi|45435480|gb|AAS61039.1| ATP-dependent Clp protease proteolytic subunit ClpP [Yersinia
           pestis biovar Microtus str. 91001]
 gi|51588591|emb|CAH20199.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease,
           heat shock protein F21.5 [Yersinia pseudotuberculosis IP
           32953]
 gi|108774746|gb|ABG17265.1| ATP-dependent Clp protease proteolytic subunit ClpP [Yersinia
           pestis Nepal516]
 gi|108780556|gb|ABG14614.1| ATP-dependent Clp protease proteolytic subunit ClpP [Yersinia
           pestis Antiqua]
 gi|115348798|emb|CAL21752.1| ATP-dependent Clp protease proteolytic subunit ClpP [Yersinia
           pestis CO92]
 gi|145211748|gb|ABP41155.1| ATP-dependent Clp protease proteolytic subunit ClpP [Yersinia
           pestis Pestoides F]
 gi|149291410|gb|EDM41484.1| ATP-dependent Clp protease proteolytic subunit ClpP [Yersinia
           pestis CA88-4125]
 gi|152962117|gb|ABS49578.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pseudotuberculosis IP 31758]
 gi|162352652|gb|ABX86600.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis Angola]
 gi|165916029|gb|EDR34636.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|165921541|gb|EDR38738.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165989967|gb|EDR42268.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166205748|gb|EDR50228.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|166960611|gb|EDR56632.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167051461|gb|EDR62869.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167057633|gb|EDR67379.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|169751985|gb|ACA69503.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pseudotuberculosis YPIII]
 gi|186697352|gb|ACC87981.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pseudotuberculosis PB1/+]
 gi|229681256|gb|EEO77350.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Yersinia pestis Nepal516]
 gi|229687731|gb|EEO79804.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229695127|gb|EEO85174.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229701008|gb|EEO89037.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Yersinia pestis Pestoides A]
 gi|262362954|gb|ACY59675.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pestis
           D106004]
 gi|262366873|gb|ACY63430.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pestis
           D182038]
 gi|270338017|gb|EFA48794.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis KIM D27]
 gi|294355347|gb|ADE65688.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pestis
           Z176003]
 gi|320016343|gb|ADV99914.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 207

 Score =  288 bits (736), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 131/208 (62%), Positives = 170/208 (81%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D     + LVPMVVEQT+RGERSYDI+SRLLKERI+F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--ERDQFAPNMALVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDHMANLIT 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIFLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GGF GQA+DIE HA++I+K+K R+NE+   + GK+ EE+
Sbjct: 119 AGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKEILKVKSRMNELMAYHTGKSLEEI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA ++ ++G+VD V   R
Sbjct: 179 ERDTERDRFLSAEQSVEYGLVDSVFTRR 206


>gi|294635324|ref|ZP_06713821.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Edwardsiella
           tarda ATCC 23685]
 gi|291091300|gb|EFE23861.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Edwardsiella
           tarda ATCC 23685]
          Length = 194

 Score =  287 bits (735), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 130/193 (67%), Positives = 161/193 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT+RGERSYDI+SRLLKERI+F+TGQ+EDHMA LI AQ+LFLEAENP+K+I
Sbjct: 1   MALVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAENPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMGS LL+AG +G RF LPN+R+
Sbjct: 61  HLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGSFLLAAGAQGKRFCLPNSRV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DIE HA++I+ IK R+N +  K+ G+  E +E+  +RD  MSA EA
Sbjct: 121 MIHQPLGGFQGQATDIEIHAKEILSIKARMNTLMAKHSGQPLEVIERDTERDRFMSAQEA 180

Query: 196 CDWGVVDKVLMSR 208
            D+G+VD VL  R
Sbjct: 181 VDYGLVDAVLTQR 193


>gi|159043937|ref|YP_001532731.1| ATP-dependent Clp protease proteolytic subunit [Dinoroseobacter
           shibae DFL 12]
 gi|189082456|sp|A8LJA8|CLPP_DINSH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|157911697|gb|ABV93130.1| endopeptidase Clp [Dinoroseobacter shibae DFL 12]
          Length = 208

 Score =  287 bits (735), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 132/207 (63%), Positives = 172/207 (83%), Gaps = 1/207 (0%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           D  D ++ LVPMVVEQT+RGER+YDI+SRLLKERIVFV G + D M+ L+ AQLL LEAE
Sbjct: 3   DPVDTYMNLVPMVVEQTSRGERAYDIFSRLLKERIVFVNGPVHDGMSQLVVAQLLHLEAE 62

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP KEIS+YINSPGGVVT+G++IYDTMQ+IKP +ST  +GQAASMGSLLL+AGEKGMRF+
Sbjct: 63  NPSKEISMYINSPGGVVTSGLSIYDTMQYIKPKVSTLVVGQAASMGSLLLTAGEKGMRFS 122

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPN+RI++HQPSGG+ GQA+DI  HAQ+  K+K RLN+IYVK+ G+  ++V   L+RD+ 
Sbjct: 123 LPNSRIMVHQPSGGYQGQATDIMIHAQETQKLKDRLNQIYVKHTGQPLKKVVDALERDNF 182

Query: 190 MSASEACDWGVVDKVLMSRIDIEEKSK 216
           M A +A +WG++D+++ SR + E+ SK
Sbjct: 183 MDAEQAKEWGLIDEIVESRAN-EDTSK 208


>gi|322834046|ref|YP_004214073.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rahnella sp.
           Y9602]
 gi|321169247|gb|ADW74946.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rahnella sp.
           Y9602]
          Length = 207

 Score =  287 bits (735), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 128/193 (66%), Positives = 163/193 (84%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT+RGERSYDI+SRLLKERI+F+TGQ+EDHMA LI AQ+LFLEAE+P+K+I
Sbjct: 14  MALVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAESPEKDI 73

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+AG +G RF LPN+R+
Sbjct: 74  YLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLTAGAEGKRFCLPNSRV 133

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DIE HA++I+K+K R+NE+  K+ GK+ EE+E+  +RD  +SA EA
Sbjct: 134 MIHQPLGGFQGQATDIEIHAKEILKVKSRMNELMAKHTGKSLEEIERDTERDRFLSADEA 193

Query: 196 CDWGVVDKVLMSR 208
             +G+VD V   R
Sbjct: 194 VQYGLVDSVFTHR 206


>gi|83311891|ref|YP_422155.1| protease subunit of ATP-dependent Clp protease [Magnetospirillum
           magneticum AMB-1]
 gi|82946732|dbj|BAE51596.1| Protease subunit of ATP-dependent Clp protease [Magnetospirillum
           magneticum AMB-1]
          Length = 244

 Score =  287 bits (735), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 130/209 (62%), Positives = 177/209 (84%), Gaps = 1/209 (0%)

Query: 8   KKDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
           ++D  D+++  LVPMVVEQTNRGERSYDIYSRLLKERI+F+TGQ+ D +A+LICAQLLFL
Sbjct: 34  ERDPIDLYMNTLVPMVVEQTNRGERSYDIYSRLLKERIIFLTGQVYDEVASLICAQLLFL 93

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E+ENP K+I+ YINSPGGVVT+G+AIYDTMQ+I+P +ST C+GQAASMGSLL++AGEKG 
Sbjct: 94  ESENPSKDIAFYINSPGGVVTSGLAIYDTMQYIRPKVSTVCIGQAASMGSLLMTAGEKGK 153

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           RF+LPN+RI++HQPSGG  GQA+DIE  A++I+ ++ RLN IYV++ G+  + +EK ++R
Sbjct: 154 RFSLPNSRIMVHQPSGGAQGQATDIEIQAREILALRARLNNIYVEHTGQPLDVIEKVMER 213

Query: 187 DHIMSASEACDWGVVDKVLMSRIDIEEKS 215
           D  M+A EA ++G++D+V+  R  +E+ S
Sbjct: 214 DKFMTADEAKEFGLIDEVVNKRPAVEDDS 242


>gi|149201013|ref|ZP_01877988.1| Protease subunit of ATP-dependent Clp protease [Roseovarius sp.
           TM1035]
 gi|149145346|gb|EDM33372.1| Protease subunit of ATP-dependent Clp protease [Roseovarius sp.
           TM1035]
          Length = 210

 Score =  287 bits (735), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 131/209 (62%), Positives = 176/209 (84%), Gaps = 1/209 (0%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           KD  D+++  LVPMVVEQT+RGER+YDI+SRLLKERI+F++G + D M++LI AQLL LE
Sbjct: 2   KDPMDIYMNTLVPMVVEQTSRGERAYDIFSRLLKERIIFLSGPVHDGMSSLIVAQLLHLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AENP KEIS+YINSPGGVVT+G++IYDTMQ+IKP +ST  +GQAASMGSLLL+AGE GMR
Sbjct: 62  AENPSKEISMYINSPGGVVTSGLSIYDTMQYIKPKVSTLVVGQAASMGSLLLTAGEPGMR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           F+LPN+R+++HQPSGG+ GQA+DI  HA++  K+K RLNEIYVK+ G+T ++VE+ L+RD
Sbjct: 122 FSLPNSRVMVHQPSGGYQGQATDIMIHARETQKLKDRLNEIYVKHTGQTLKKVEEALERD 181

Query: 188 HIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           + MS  EA  WG++D+++ +R   +E +K
Sbjct: 182 NFMSPEEAKAWGLIDEIVANRDKGDEAAK 210


>gi|227328849|ref|ZP_03832873.1| ATP-dependent Clp protease proteolytic subunit [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 207

 Score =  287 bits (735), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 130/208 (62%), Positives = 171/208 (82%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  +++ +   + LVPMVVEQT+RGERSYDIYSRLLKERI+F+TGQ+ED+MA L+ 
Sbjct: 1   MSYSG--EQERQAPHMALVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDYMANLVV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG R  LPN+R+++HQP GGF GQA+DIE HA++I+K+K ++NE+  K+ G+  E +
Sbjct: 119 AGAKGKRICLPNSRVMIHQPLGGFQGQATDIEIHAKEILKVKAKMNELMAKHTGQPLEAI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SASEA D+G+VD V  +R
Sbjct: 179 ERDTERDRFLSASEAVDYGLVDSVFTNR 206


>gi|83949690|ref|ZP_00958423.1| Protease subunit of ATP-dependent Clp protease [Roseovarius
           nubinhibens ISM]
 gi|83837589|gb|EAP76885.1| Protease subunit of ATP-dependent Clp protease [Roseovarius
           nubinhibens ISM]
          Length = 203

 Score =  287 bits (734), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 128/199 (64%), Positives = 170/199 (85%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQT+RGER+YDI+SRLLKERI+F+ G + D M++L+ AQLL LEAENP KEIS+
Sbjct: 4   LVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMSSLVVAQLLHLEAENPSKEISM 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G++IYDTMQ+I+P +ST  +GQAASMGSLLL+AG KGMR++LPN+RI++
Sbjct: 64  YINSPGGVVTSGLSIYDTMQYIRPAVSTLVIGQAASMGSLLLTAGAKGMRYSLPNSRIMV 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG+ GQA+DI  HA++ +K+KRRLNEIYVK+ G+T ++VE+ L+RD+ MS  EA  
Sbjct: 124 HQPSGGYQGQATDIMIHAEETLKLKRRLNEIYVKHTGQTLKKVEEALERDNFMSPEEAKS 183

Query: 198 WGVVDKVLMSRIDIEEKSK 216
           WG++D+++ SR   +E  K
Sbjct: 184 WGLIDEIVESRGKADEDDK 202


>gi|163793182|ref|ZP_02187158.1| Protease subunit of ATP-dependent Clp protease [alpha
           proteobacterium BAL199]
 gi|159181828|gb|EDP66340.1| Protease subunit of ATP-dependent Clp protease [alpha
           proteobacterium BAL199]
          Length = 213

 Score =  287 bits (734), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 127/197 (64%), Positives = 170/197 (86%), Gaps = 1/197 (0%)

Query: 13  DVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           D+++  LVPMVVEQTNRGER+YDIYSRLLKERI+FV G I D +A+++CAQLLFLEAENP
Sbjct: 6   DIYMNSLVPMVVEQTNRGERAYDIYSRLLKERIIFVMGPINDAVASVVCAQLLFLEAENP 65

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+I++YINSPGG+VT+GMA+YDTM++++P IST CMG AASMGSLLL+AG  G R+ LP
Sbjct: 66  TKDIAMYINSPGGIVTSGMAMYDTMEYVRPEISTVCMGHAASMGSLLLTAGAPGKRYCLP 125

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           NA++++HQPSGGF GQASDIE HA++I+K + RLN+IYVK+ G++ +E+EK +DRD+ M+
Sbjct: 126 NAKVMIHQPSGGFQGQASDIEIHAREIIKTRERLNQIYVKHSGRSIDEIEKGMDRDNFMT 185

Query: 192 ASEACDWGVVDKVLMSR 208
           A EA  +G++D+V+  R
Sbjct: 186 ADEAKAFGLIDEVIHKR 202


>gi|83943111|ref|ZP_00955571.1| Protease subunit of ATP-dependent Clp protease [Sulfitobacter sp.
           EE-36]
 gi|83846119|gb|EAP83996.1| Protease subunit of ATP-dependent Clp protease [Sulfitobacter sp.
           EE-36]
          Length = 211

 Score =  286 bits (733), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 129/191 (67%), Positives = 164/191 (85%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQT+RGER+YDI+SRLLKERI+F+ G + D M++LI AQLL LEAENP KEIS+
Sbjct: 4   LVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMSSLIVAQLLHLEAENPSKEISM 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G++IYDTMQ+IKP +ST  +GQAASMGSLLL AGEKGMRF+LPN+R+++
Sbjct: 64  YINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLQAGEKGMRFSLPNSRVMV 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG+ GQA+DI  HAQ+  K+K RLNEIYVK+ G+  E+VE  L+RD+ MS  EA D
Sbjct: 124 HQPSGGYQGQATDIMIHAQETQKLKTRLNEIYVKHTGQPLEKVEAALERDNFMSPEEAKD 183

Query: 198 WGVVDKVLMSR 208
           WG++D+++ +R
Sbjct: 184 WGLIDEIVENR 194


>gi|261855007|ref|YP_003262290.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Halothiobacillus neapolitanus c2]
 gi|261835476|gb|ACX95243.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Halothiobacillus neapolitanus c2]
          Length = 210

 Score =  286 bits (733), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 131/192 (68%), Positives = 160/192 (83%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQT+RGER+YDIYSRLLKER+VFV G IEDHMA LI AQLLFLE+ENP K+I 
Sbjct: 18  ALVPMVVEQTSRGERAYDIYSRLLKERVVFVVGPIEDHMANLIVAQLLFLESENPDKDIH 77

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGVVTAGM+IYDTMQFIKP +ST C+GQAASMGS+LLS GE G RFALPN+R++
Sbjct: 78  LYINSPGGVVTAGMSIYDTMQFIKPHVSTLCIGQAASMGSILLSGGEPGKRFALPNSRVM 137

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDI+ HA++I+K++  LN +  K+C +  E +E+  DRD  +SASEA 
Sbjct: 138 IHQPLGGFQGQASDIKIHAEEIIKLRHSLNGVLAKHCNQPMEVIERDTDRDKFLSASEAV 197

Query: 197 DWGVVDKVLMSR 208
           ++G++D VL  R
Sbjct: 198 EYGLIDAVLDKR 209


>gi|238754235|ref|ZP_04615592.1| ATP-dependent Clp protease proteolytic subunit [Yersinia ruckeri
           ATCC 29473]
 gi|238707482|gb|EEP99842.1| ATP-dependent Clp protease proteolytic subunit [Yersinia ruckeri
           ATCC 29473]
          Length = 194

 Score =  286 bits (733), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 128/193 (66%), Positives = 162/193 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT+RGERSYDI+SRLLKERI+F+TGQ+EDHMA LI AQ+LFLEAENP+K+I
Sbjct: 1   MALVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAENPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+AG KG RF LPN+R+
Sbjct: 61  FLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLTAGAKGKRFCLPNSRV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DIE HA++I+K+K R+NE+  K+ GK  EE+E+  +RD  +SA E+
Sbjct: 121 MIHQPLGGFQGQATDIEIHAREILKVKSRMNELMAKHTGKPLEEIERDTERDRFLSAEES 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD +   R
Sbjct: 181 VKYGLVDDIFNRR 193


>gi|259416932|ref|ZP_05740852.1| Clp protease [Silicibacter sp. TrichCH4B]
 gi|259348371|gb|EEW60148.1| Clp protease [Silicibacter sp. TrichCH4B]
          Length = 218

 Score =  286 bits (733), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 126/197 (63%), Positives = 171/197 (86%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQT+RGER+YDI+SRLLKERI+F+ G + D M++LI AQLL LEAENP KEIS+
Sbjct: 20  LVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMSSLIVAQLLHLEAENPSKEISM 79

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G++IYDTMQ+IKP +ST  +GQAASMGSLLL+AGE GMRF+LPN+R+++
Sbjct: 80  YINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLTAGEAGMRFSLPNSRVMV 139

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG+ GQA+DI  HA++ +K+KRRLNEIYVK+ G+ Y+ +EK L+RD+ MS  +A +
Sbjct: 140 HQPSGGYQGQATDIMIHAEETLKLKRRLNEIYVKHTGQDYDTIEKALERDNFMSPEQAKE 199

Query: 198 WGVVDKVLMSRIDIEEK 214
           +G++D+++ +R+  E++
Sbjct: 200 FGLIDEIVENRVKAEDE 216


>gi|293392545|ref|ZP_06636865.1| ATP-dependent Clp protease proteolytic subunit [Serratia odorifera
           DSM 4582]
 gi|291424947|gb|EFE98156.1| ATP-dependent Clp protease proteolytic subunit [Serratia odorifera
           DSM 4582]
          Length = 207

 Score =  286 bits (733), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 129/208 (62%), Positives = 172/208 (82%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D     + LVPMVVEQT+RGERSYDIYSRLLKERI+F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--EQDQFAPHMALVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAE+P+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMGS LL+
Sbjct: 59  AQMLFLEAESPEKDIFLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGSFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+  ++ G++ E++
Sbjct: 119 AGTKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKARMNELMAQHTGQSLEQI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           ++  +RD  M+A E+ ++G+VD +L  R
Sbjct: 179 DRDTERDRFMTAEESVEYGLVDGILTHR 206


>gi|255261268|ref|ZP_05340610.1| Clp protease [Thalassiobium sp. R2A62]
 gi|255103603|gb|EET46277.1| Clp protease [Thalassiobium sp. R2A62]
          Length = 209

 Score =  286 bits (732), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 127/200 (63%), Positives = 168/200 (84%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
            D  + ++ LVPMVVEQT+RGER+YDI+SRLLKERI+F+ G + D M+ LI AQLL LEA
Sbjct: 2   NDPVETYMNLVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMSQLIVAQLLHLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP KEIS+YINSPGGVVT+G++IYDTMQ+IKP +ST  +GQAASMGSLLL+AGEKGMRF
Sbjct: 62  ENPSKEISMYINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLTAGEKGMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPN+R+++HQPSGG+ GQA+DI  HA +  K+K RLN IYV++ G+T ++VE  L+RD+
Sbjct: 122 SLPNSRVMVHQPSGGYQGQATDIMIHAAETQKLKDRLNSIYVRHTGQTLKKVEAALERDN 181

Query: 189 IMSASEACDWGVVDKVLMSR 208
            MSA +A DWG++D+++ +R
Sbjct: 182 FMSAEDAKDWGLIDEIVENR 201


>gi|260575566|ref|ZP_05843564.1| Endopeptidase Clp [Rhodobacter sp. SW2]
 gi|259022209|gb|EEW25507.1| Endopeptidase Clp [Rhodobacter sp. SW2]
          Length = 210

 Score =  286 bits (732), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 133/209 (63%), Positives = 172/209 (82%), Gaps = 1/209 (0%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           +D  D ++  LVPMVVEQT+RGER+YDI+SR+LKERI+F++G + D M+ LICAQLLFLE
Sbjct: 2   RDPIDHYMNTLVPMVVEQTSRGERAYDIFSRMLKERIIFLSGPVHDGMSALICAQLLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AENP KEIS+YINSPGGVVT+G++IYDTMQ+IKP IST  +GQAASMGSLLL+AG+KGMR
Sbjct: 62  AENPTKEISMYINSPGGVVTSGLSIYDTMQYIKPRISTLVIGQAASMGSLLLTAGQKGMR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           F+LPN+R+++HQPSGG+ GQA+DI  HAQ+  K+K RLN IYVK+ G+  E V   L+RD
Sbjct: 122 FSLPNSRVMVHQPSGGYQGQATDIMIHAQETQKLKDRLNGIYVKHTGQPMEAVVAALERD 181

Query: 188 HIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           + MSA +A  WG++D+++ SR   EE  K
Sbjct: 182 NFMSAEDAKSWGLIDEIVESRGKAEETPK 210


>gi|238791431|ref|ZP_04635069.1| ATP-dependent Clp protease proteolytic subunit [Yersinia intermedia
           ATCC 29909]
 gi|238729047|gb|EEQ20563.1| ATP-dependent Clp protease proteolytic subunit [Yersinia intermedia
           ATCC 29909]
          Length = 194

 Score =  286 bits (732), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 129/193 (66%), Positives = 161/193 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT+RGERSYDI+SRLLKERI+F+TGQ+EDHMA LI AQ+LFLEAENP+K+I
Sbjct: 1   MALVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDHMANLITAQMLFLEAENPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+AG KG RF LPN+R+
Sbjct: 61  FLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLTAGAKGKRFCLPNSRV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DIE HA++I+K+K R+NE+   + GK  EE+E+  +RD  +SA EA
Sbjct: 121 MIHQPLGGFQGQATDIEIHAREILKVKSRMNELMALHTGKPLEEIERDTERDRFLSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD V   R
Sbjct: 181 VGYGLVDSVFTRR 193


>gi|300900508|ref|ZP_07118675.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 198-1]
 gi|300924164|ref|ZP_07140156.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 182-1]
 gi|300937054|ref|ZP_07151920.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 21-1]
 gi|300958005|ref|ZP_07170169.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 175-1]
 gi|300988008|ref|ZP_07178488.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 45-1]
 gi|300997374|ref|ZP_07181714.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 200-1]
 gi|301022569|ref|ZP_07186441.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 69-1]
 gi|301049644|ref|ZP_07196593.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 185-1]
 gi|301301588|ref|ZP_07207723.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 124-1]
 gi|301647363|ref|ZP_07247175.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 146-1]
 gi|309787029|ref|ZP_07681641.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shigella
           dysenteriae 1617]
 gi|312964538|ref|ZP_07778794.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli 2362-75]
 gi|312970533|ref|ZP_07784714.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli 1827-70]
 gi|300298581|gb|EFJ54966.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 185-1]
 gi|300304193|gb|EFJ58713.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 200-1]
 gi|300315272|gb|EFJ65056.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 175-1]
 gi|300355989|gb|EFJ71859.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 198-1]
 gi|300397450|gb|EFJ80988.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 69-1]
 gi|300407560|gb|EFJ91098.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 45-1]
 gi|300419617|gb|EFK02928.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 182-1]
 gi|300457885|gb|EFK21378.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 21-1]
 gi|300843085|gb|EFK70845.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 124-1]
 gi|301074508|gb|EFK89314.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 146-1]
 gi|308924607|gb|EFP70102.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shigella
           dysenteriae 1617]
 gi|310337182|gb|EFQ02320.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli 1827-70]
 gi|312290772|gb|EFR18649.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli 2362-75]
 gi|313646936|gb|EFS11393.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shigella
           flexneri 2a str. 2457T]
 gi|315256265|gb|EFU36233.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 85-1]
 gi|315289845|gb|EFU49235.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 110-3]
 gi|315294229|gb|EFU53580.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 153-1]
 gi|315299561|gb|EFU58809.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 16-3]
 gi|315616622|gb|EFU97239.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli 3431]
 gi|323153474|gb|EFZ39728.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli EPECa14]
 gi|323160452|gb|EFZ46400.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli E128010]
 gi|323164238|gb|EFZ50045.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shigella
           sonnei 53G]
 gi|323170523|gb|EFZ56173.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli LT-68]
 gi|323178294|gb|EFZ63872.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli 1180]
 gi|323184732|gb|EFZ70103.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli 1357]
 gi|323191357|gb|EFZ76620.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli RN587/1]
 gi|324010068|gb|EGB79287.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 57-2]
 gi|324010651|gb|EGB79870.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 60-1]
 gi|324016702|gb|EGB85921.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 117-3]
 gi|325498272|gb|EGC96131.1| ATP-dependent Clp protease proteolytic subunit [Escherichia
           fergusonii ECD227]
 gi|327254765|gb|EGE66381.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli STEC_7v]
 gi|332085596|gb|EGI90760.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shigella
           dysenteriae 155-74]
 gi|332094593|gb|EGI99639.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shigella
           boydii 5216-82]
 gi|332098592|gb|EGJ03558.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shigella
           boydii 3594-74]
          Length = 194

 Score =  286 bits (732), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 125/193 (64%), Positives = 165/193 (85%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI AQ+LFLEAENP+K+I
Sbjct: 1   MALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+AG KG RF LPN+R+
Sbjct: 61  YLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG+ GQA+DIE HA++I+K+K R+NE+   + G++ E++E+  +RD  +SA EA
Sbjct: 121 MIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD +L  R
Sbjct: 181 VEYGLVDSILTHR 193


>gi|254785725|ref|YP_003073154.1| ATP-dependent Clp protease proteolytic subunit [Teredinibacter
           turnerae T7901]
 gi|259585966|sp|C5BTJ0|CLPP_TERTT RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|237684355|gb|ACR11619.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Teredinibacter turnerae T7901]
          Length = 214

 Score =  286 bits (731), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 135/197 (68%), Positives = 159/197 (80%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+VVEQT RGERSYDIYSRLLKER++F+ GQ+EDHMA L+ AQLLFLEAENP K+I L
Sbjct: 18  LVPIVVEQTARGERSYDIYSRLLKERVIFLVGQVEDHMANLVVAQLLFLEAENPDKDIHL 77

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM+IYDTMQFIKP +ST C+GQA SMGS LLSAG  G RF LPNAR ++
Sbjct: 78  YINSPGGSVTAGMSIYDTMQFIKPDVSTMCIGQACSMGSFLLSAGATGKRFCLPNARTMI 137

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQASDI  HAQ+I+KI+ RLNEI  K+ GK+ EEV +  +RD+ MSA E+  
Sbjct: 138 HQPSGGAQGQASDIHIHAQEILKIRARLNEIMAKHTGKSVEEVARDTERDNFMSAEESKA 197

Query: 198 WGVVDKVLMSRIDIEEK 214
           +G+VD VL  R+  E K
Sbjct: 198 YGLVDDVLYQRVPEESK 214


>gi|326403118|ref|YP_004283199.1| ATP-dependent Clp protease proteolytic subunit [Acidiphilium
           multivorum AIU301]
 gi|325049979|dbj|BAJ80317.1| ATP-dependent Clp protease proteolytic subunit [Acidiphilium
           multivorum AIU301]
          Length = 209

 Score =  285 bits (730), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 130/198 (65%), Positives = 170/198 (85%), Gaps = 1/198 (0%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           +D  ++++  LVPMVVEQT RGERSYDI+SRLLKERI+F+TG + D + +LI AQLLFLE
Sbjct: 3   RDPTEIYMNSLVPMVVEQTARGERSYDIFSRLLKERIIFLTGPVYDQVGSLIAAQLLFLE 62

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           +ENP KEI+ YINSPGGVV+AG+AIYDTMQ+IK P+ST C+GQAASMGSLLL+AGEKG R
Sbjct: 63  SENPSKEIAFYINSPGGVVSAGLAIYDTMQYIKSPVSTVCIGQAASMGSLLLAAGEKGKR 122

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           FALPN+RI++HQPSGG  GQASDIE  A++I+ ++RRLN+IYV + G++ E +E+ L+RD
Sbjct: 123 FALPNSRIMVHQPSGGAQGQASDIEIQAREILTLRRRLNDIYVTHTGQSLEAIEQALERD 182

Query: 188 HIMSASEACDWGVVDKVL 205
             MSA+EA ++G+VD+V+
Sbjct: 183 RFMSANEAQEFGLVDEVV 200


>gi|115311359|sp|Q2W3H9|CLPP_MAGMM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
          Length = 203

 Score =  285 bits (730), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 128/198 (64%), Positives = 170/198 (85%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQTNRGERSYDIYSRLLKERI+F+TGQ+ D +A+LICAQLLFLE+ENP K+I+ 
Sbjct: 4   LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGQVYDEVASLICAQLLFLESENPSKDIAF 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G+AIYDTMQ+I+P +ST C+GQAASMGSLL++AGEKG RF+LPN+RI++
Sbjct: 64  YINSPGGVVTSGLAIYDTMQYIRPKVSTVCIGQAASMGSLLMTAGEKGKRFSLPNSRIMV 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQA+DIE  A++I+ ++ RLN IYV++ G+  + +EK ++RD  M+A EA +
Sbjct: 124 HQPSGGAQGQATDIEIQAREILALRARLNNIYVEHTGQPLDVIEKVMERDKFMTADEAKE 183

Query: 198 WGVVDKVLMSRIDIEEKS 215
           +G++D+V+  R  +E+ S
Sbjct: 184 FGLIDEVVNKRPAVEDDS 201


>gi|3318853|pdb|1TYF|A Chain A, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 gi|3318854|pdb|1TYF|B Chain B, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 gi|3318855|pdb|1TYF|C Chain C, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 gi|3318856|pdb|1TYF|D Chain D, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 gi|3318857|pdb|1TYF|E Chain E, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 gi|3318858|pdb|1TYF|F Chain F, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 gi|3318859|pdb|1TYF|G Chain G, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 gi|3318860|pdb|1TYF|H Chain H, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 gi|3318861|pdb|1TYF|I Chain I, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 gi|3318862|pdb|1TYF|J Chain J, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 gi|3318863|pdb|1TYF|K Chain K, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 gi|3318864|pdb|1TYF|L Chain L, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 gi|3318865|pdb|1TYF|M Chain M, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 gi|3318866|pdb|1TYF|N Chain N, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 gi|93278456|pdb|1YG6|A Chain A, Clpp
 gi|93278457|pdb|1YG6|B Chain B, Clpp
 gi|93278458|pdb|1YG6|C Chain C, Clpp
 gi|93278459|pdb|1YG6|D Chain D, Clpp
 gi|93278460|pdb|1YG6|E Chain E, Clpp
 gi|93278461|pdb|1YG6|F Chain F, Clpp
 gi|93278462|pdb|1YG6|G Chain G, Clpp
 gi|93278463|pdb|1YG6|H Chain H, Clpp
 gi|93278464|pdb|1YG6|I Chain I, Clpp
 gi|93278465|pdb|1YG6|J Chain J, Clpp
 gi|93278466|pdb|1YG6|K Chain K, Clpp
 gi|93278467|pdb|1YG6|L Chain L, Clpp
 gi|93278468|pdb|1YG6|M Chain M, Clpp
 gi|93278469|pdb|1YG6|N Chain N, Clpp
 gi|109157730|pdb|2FZS|A Chain A, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 gi|109157731|pdb|2FZS|B Chain B, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 gi|109157732|pdb|2FZS|C Chain C, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 gi|109157733|pdb|2FZS|D Chain D, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 gi|109157734|pdb|2FZS|E Chain E, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 gi|109157735|pdb|2FZS|F Chain F, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 gi|109157736|pdb|2FZS|G Chain G, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 gi|109157737|pdb|2FZS|H Chain H, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 gi|109157738|pdb|2FZS|I Chain I, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 gi|109157739|pdb|2FZS|J Chain J, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 gi|109157740|pdb|2FZS|K Chain K, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 gi|109157741|pdb|2FZS|L Chain L, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 gi|109157742|pdb|2FZS|M Chain M, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 gi|109157743|pdb|2FZS|N Chain N, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
          Length = 193

 Score =  285 bits (730), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 125/192 (65%), Positives = 164/192 (85%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI AQ+LFLEAENP+K+I 
Sbjct: 1   ALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIY 60

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+AG KG RF LPN+R++
Sbjct: 61  LYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVM 120

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG+ GQA+DIE HA++I+K+K R+NE+   + G++ E++E+  +RD  +SA EA 
Sbjct: 121 IHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAV 180

Query: 197 DWGVVDKVLMSR 208
           ++G+VD +L  R
Sbjct: 181 EYGLVDSILTHR 192


>gi|239995517|ref|ZP_04716041.1| ATP-dependent Clp protease proteolytic subunit [Alteromonas
           macleodii ATCC 27126]
          Length = 209

 Score =  285 bits (729), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 129/199 (64%), Positives = 164/199 (82%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
           D    LVPMVVEQT++GERSYDIYSRLLKE ++F+ GQ+EDHMA LI AQ+LFLEAENP+
Sbjct: 7   DPMNALVPMVVEQTSKGERSYDIYSRLLKENVIFLVGQVEDHMANLIVAQMLFLEAENPE 66

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K+I LYINSPGG VTAGMAIYDTM+FIKP +ST CMGQAASMG+ LLSAG KG R+ LPN
Sbjct: 67  KDIFLYINSPGGSVTAGMAIYDTMKFIKPDVSTVCMGQAASMGAFLLSAGAKGKRYCLPN 126

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           +R+++HQP GGF GQASD E HA++I+ IK +LN +   + G+ YE+V +  DRD+ +SA
Sbjct: 127 SRVMIHQPLGGFQGQASDFEIHAKEILSIKEKLNRLMADHTGQDYEKVARDTDRDNFLSA 186

Query: 193 SEACDWGVVDKVLMSRIDI 211
           +EA ++G+VD+VL +R D+
Sbjct: 187 TEAKEYGLVDQVLANRSDV 205


>gi|148259928|ref|YP_001234055.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acidiphilium
           cryptum JF-5]
 gi|146401609|gb|ABQ30136.1| ATP-dependent Clp protease proteolytic subunit ClpP [Acidiphilium
           cryptum JF-5]
          Length = 211

 Score =  285 bits (729), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 130/198 (65%), Positives = 170/198 (85%), Gaps = 1/198 (0%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           +D  ++++  LVPMVVEQT RGERSYDI+SRLLKERI+F+TG + D + +LI AQLLFLE
Sbjct: 5   RDPTEIYMNSLVPMVVEQTARGERSYDIFSRLLKERIIFLTGPVYDQVGSLIAAQLLFLE 64

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           +ENP KEI+ YINSPGGVV+AG+AIYDTMQ+IK P+ST C+GQAASMGSLLL+AGEKG R
Sbjct: 65  SENPSKEIAFYINSPGGVVSAGLAIYDTMQYIKSPVSTVCIGQAASMGSLLLAAGEKGKR 124

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           FALPN+RI++HQPSGG  GQASDIE  A++I+ ++RRLN+IYV + G++ E +E+ L+RD
Sbjct: 125 FALPNSRIMVHQPSGGAQGQASDIEIQAREILTLRRRLNDIYVTHTGQSLEAIEQALERD 184

Query: 188 HIMSASEACDWGVVDKVL 205
             MSA+EA ++G+VD+V+
Sbjct: 185 RFMSANEAQEFGLVDEVV 202


>gi|294678131|ref|YP_003578746.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rhodobacter
           capsulatus SB 1003]
 gi|294476951|gb|ADE86339.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhodobacter
           capsulatus SB 1003]
          Length = 209

 Score =  285 bits (729), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 131/205 (63%), Positives = 171/205 (83%), Gaps = 1/205 (0%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           KD  D+++  LVPMVVEQT+RGER+YDIYSRLLKERI+F+ G   D M++LICAQLLFLE
Sbjct: 2   KDPVDLYMNTLVPMVVEQTSRGERAYDIYSRLLKERIIFLAGPFHDGMSSLICAQLLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AENP KEIS+YINSPGGVVT+G+AIYDTMQ+I+P +ST  +GQAASMGS++  AGEKGMR
Sbjct: 62  AENPSKEISMYINSPGGVVTSGLAIYDTMQYIRPKVSTLVIGQAASMGSVIACAGEKGMR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           F+LPN+RI++HQPSGGF GQA+DI  HA++  KI++RL EIYV++ G++ EEV + L+RD
Sbjct: 122 FSLPNSRIMVHQPSGGFQGQATDIMIHARETEKIRQRLYEIYVRHTGRSLEEVAEALERD 181

Query: 188 HIMSASEACDWGVVDKVLMSRIDIE 212
             MS  EA +WG +D++L +R  ++
Sbjct: 182 RFMSPEEALEWGHLDEILSARPSLD 206


>gi|332141945|ref|YP_004427683.1| ATP-dependent Clp protease proteolytic subunit [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327551967|gb|AEA98685.1| ATP-dependent Clp protease proteolytic subunit [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 209

 Score =  285 bits (729), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 129/199 (64%), Positives = 164/199 (82%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
           D    LVPMVVEQT++GERSYDIYSRLLKE ++F+ GQ+EDHMA LI AQ+LFLEAENP+
Sbjct: 7   DPMNALVPMVVEQTSKGERSYDIYSRLLKENVIFLVGQVEDHMANLIVAQMLFLEAENPE 66

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K+I LYINSPGG VTAGMAIYDTM+FIKP +ST CMGQAASMG+ LLSAG KG R+ LPN
Sbjct: 67  KDIFLYINSPGGSVTAGMAIYDTMRFIKPDVSTVCMGQAASMGAFLLSAGAKGKRYCLPN 126

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           +R+++HQP GGF GQASD E HA++I+ IK +LN +   + G+ YE+V +  DRD+ +SA
Sbjct: 127 SRVMIHQPLGGFQGQASDFEIHAKEILSIKEKLNRLLADHTGQDYEKVARDTDRDNFLSA 186

Query: 193 SEACDWGVVDKVLMSRIDI 211
           +EA ++G+VD+VL +R D+
Sbjct: 187 TEAKEYGLVDQVLANRSDV 205


>gi|254428693|ref|ZP_05042400.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Alcanivorax
           sp. DG881]
 gi|196194862|gb|EDX89821.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Alcanivorax
           sp. DG881]
          Length = 244

 Score =  285 bits (728), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 129/193 (66%), Positives = 161/193 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LGLVP+V+EQT RGERS+DIYSRLLKER++F+ GQ+EDHMA LI AQ+LFLE+ENP K+I
Sbjct: 50  LGLVPVVIEQTARGERSFDIYSRLLKERVIFMIGQVEDHMANLIVAQMLFLESENPDKDI 109

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQAASMG+ LL+AG  G RFALPNAR+
Sbjct: 110 HLYINSPGGSVTAGMSIYDTMQFIKPDVSTMCVGQAASMGAFLLTAGATGKRFALPNARV 169

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQASDIE HA++I+KIK +LN +   + G+  E++EK  DRD+ MSA EA
Sbjct: 170 MIHQPLGGFQGQASDIEIHAKEILKIKGQLNSLLAHHTGQPIEQLEKDTDRDNFMSADEA 229

Query: 196 CDWGVVDKVLMSR 208
            ++G++D VL  R
Sbjct: 230 KEYGIIDAVLSQR 242


>gi|50120087|ref|YP_049254.1| ATP-dependent Clp protease proteolytic subunit [Pectobacterium
           atrosepticum SCRI1043]
 gi|60389567|sp|Q6D827|CLPP_ERWCT RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|49610613|emb|CAG74058.1| ATP-dependent Clp protease proteolytic subunit [Pectobacterium
           atrosepticum SCRI1043]
          Length = 207

 Score =  285 bits (728), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 129/208 (62%), Positives = 170/208 (81%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  +++ +   + LVPMVVEQT RGERSYDIYSRLLKERI+F+TGQ+ED+MA L+ 
Sbjct: 1   MSYSG--EQERQAPHMALVPMVVEQTARGERSYDIYSRLLKERIIFLTGQVEDYMANLVV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG R  LPN+R+++HQP GGF GQA+DIE HA++I+K+K ++NE+  K+ G+  E +
Sbjct: 119 AGAKGKRICLPNSRVMIHQPLGGFQGQATDIEIHAKEILKVKAKMNELMAKHTGQPLEAI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SASEA ++G+VD V  +R
Sbjct: 179 ERDTERDRFLSASEAVEYGLVDSVFTNR 206


>gi|85373054|ref|YP_457116.1| ATP-dependent Clp protease proteolytic subunit [Erythrobacter
           litoralis HTCC2594]
 gi|84786137|gb|ABC62319.1| ATP-dependent Clp protease [Erythrobacter litoralis HTCC2594]
          Length = 234

 Score =  285 bits (728), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 136/213 (63%), Positives = 171/213 (80%), Gaps = 1/213 (0%)

Query: 5   GCAKKDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQL 63
           G   + + D   G LVP+VVEQT+RGERS+DI+SRLL+ERIVFVTGQ+ED MA+LI AQL
Sbjct: 13  GTQGQFTRDPLTGALVPVVVEQTSRGERSFDIFSRLLRERIVFVTGQVEDGMASLITAQL 72

Query: 64  LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           LFLE+ENP K IS+YINSPGGVVTAGMAI+DTMQ+IKP +ST CMGQAASMGS LL+AGE
Sbjct: 73  LFLESENPSKPISMYINSPGGVVTAGMAIHDTMQYIKPKVSTVCMGQAASMGSFLLAAGE 132

Query: 124 KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
            GMR ALPNARI++HQPSGG  G ASDIE  A++I++I++R+N++YVK  G+   ++EK 
Sbjct: 133 PGMRVALPNARIMVHQPSGGARGMASDIEIQAREILRIRKRMNDLYVKYTGQKLADIEKA 192

Query: 184 LDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           +DRD  + A EA  +G+VDKV  +R + E   K
Sbjct: 193 MDRDTFLEAEEAMKFGLVDKVFETRPENEGGDK 225


>gi|294083692|ref|YP_003550449.1| protease subunit of ATP-dependent Clp protease [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292663264|gb|ADE38365.1| Protease subunit of ATP-dependent Clp protease [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 216

 Score =  285 bits (728), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 128/200 (64%), Positives = 169/200 (84%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           K + D    LVPMVVEQTNRGERSYDI+SRLLKERI+F+ G ++D  A+L+C+QLLFLE+
Sbjct: 8   KSNFDPMANLVPMVVEQTNRGERSYDIFSRLLKERIIFLNGPVDDTTASLVCSQLLFLES 67

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP K+IS+YINSPGG+VT+G+AIYDTM++I+P +ST CMGQAASMGSLLL AG  G R+
Sbjct: 68  ENPTKDISMYINSPGGIVTSGLAIYDTMEYIRPDVSTVCMGQAASMGSLLLMAGAAGKRY 127

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPNARI+ HQPSGGFSGQASDIE HA++I+ +++RLN +YVK+ GKT ++VEK ++RD 
Sbjct: 128 SLPNARIMTHQPSGGFSGQASDIEIHAREILDLRKRLNGMYVKHTGKTLKDVEKIMERDT 187

Query: 189 IMSASEACDWGVVDKVLMSR 208
            M+A +A  +G++D+V+  R
Sbjct: 188 FMTAEDAQKFGLIDEVVEKR 207


>gi|126732556|ref|ZP_01748354.1| Protease subunit of ATP-dependent Clp protease [Sagittula stellata
           E-37]
 gi|126707002|gb|EBA06070.1| Protease subunit of ATP-dependent Clp protease [Sagittula stellata
           E-37]
          Length = 197

 Score =  285 bits (728), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 125/189 (66%), Positives = 164/189 (86%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MVVEQT+RGER+YDI+SRLLKERIVF+ G + D M++L+ AQLL LEAENP KEIS+YIN
Sbjct: 1   MVVEQTSRGERAYDIFSRLLKERIVFLNGPVHDGMSSLVVAQLLHLEAENPSKEISMYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGGVVT+G++IYDTMQ+IKP +ST  +GQAASMGSLLL+AG  GMRF+LPN+RI++HQP
Sbjct: 61  SPGGVVTSGLSIYDTMQYIKPKVSTLVVGQAASMGSLLLTAGAAGMRFSLPNSRIMVHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
           SGG+ GQA+DI  HA++ +K+KRRLNEIYV++ G+TYE VE  L+RD+ M A +A +WG+
Sbjct: 121 SGGYQGQATDIMIHAEETIKLKRRLNEIYVRHTGQTYEAVEAALERDNFMDAEKAKEWGL 180

Query: 201 VDKVLMSRI 209
           +D+++ SR+
Sbjct: 181 IDEIVTSRV 189


>gi|254467045|ref|ZP_05080456.1| Clp protease [Rhodobacterales bacterium Y4I]
 gi|206687953|gb|EDZ48435.1| Clp protease [Rhodobacterales bacterium Y4I]
          Length = 202

 Score =  285 bits (728), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 128/191 (67%), Positives = 165/191 (86%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQT+RGER+YDI+SRLLKERI+FV G + D M++LI AQLL LEAENP KEIS+
Sbjct: 4   LVPMVVEQTSRGERAYDIFSRLLKERIIFVNGPVHDGMSSLIVAQLLHLEAENPSKEISM 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G++IYDTMQ+IKP +ST  +GQAASMGSLLL+AGEKGMRF+LPN+R+++
Sbjct: 64  YINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLTAGEKGMRFSLPNSRVMV 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGGF GQA+DI  HA++ +K+K+RLNEIYVK+ G+ YE V   L+RD+ MS  EA  
Sbjct: 124 HQPSGGFQGQATDIMIHAEETLKLKKRLNEIYVKHTGQDYETVVNALERDNFMSPEEAKA 183

Query: 198 WGVVDKVLMSR 208
           +G++D+++ +R
Sbjct: 184 FGLIDEIVENR 194


>gi|260596809|ref|YP_003209380.1| ATP-dependent Clp protease proteolytic subunit [Cronobacter
           turicensis z3032]
 gi|260215986|emb|CBA28638.1| ATP-dependent Clp protease proteolytic subunit [Cronobacter
           turicensis z3032]
          Length = 214

 Score =  284 bits (727), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 127/202 (62%), Positives = 167/202 (82%), Gaps = 3/202 (1%)

Query: 10  DSEDVF---LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
           D  D F   + LVPMVVEQT+RGERSYDI+SRLLKERI+F+TGQ+ED MA LI AQ+LFL
Sbjct: 12  DERDQFAPHMALVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDQMANLIVAQMLFL 71

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           EAENP+K+I LYINSPGGV+TAGM+IYDTMQFI+P +ST CMGQAASMG+ LL+AG KG 
Sbjct: 72  EAENPEKDIYLYINSPGGVITAGMSIYDTMQFIQPDVSTICMGQAASMGAFLLTAGTKGK 131

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+  ++ G+  E++E+  +R
Sbjct: 132 RFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKARMNELMAQHTGQPLEQIERDTER 191

Query: 187 DHIMSASEACDWGVVDKVLMSR 208
           D  +SA EA ++G+VD ++  R
Sbjct: 192 DRFLSAGEAVEYGLVDSIMTHR 213


>gi|163731525|ref|ZP_02138972.1| Clp protease, putative [Roseobacter litoralis Och 149]
 gi|161394979|gb|EDQ19301.1| Clp protease, putative [Roseobacter litoralis Och 149]
          Length = 208

 Score =  284 bits (727), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 128/200 (64%), Positives = 169/200 (84%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           KD  + ++ LVPMVVEQT+RGER+YDI+SRLLKERI+F+ G + D M++LI AQLL LEA
Sbjct: 2   KDPIETYMNLVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMSSLIVAQLLHLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           +NP KEIS+YINSPGGVVT+G++IYDTMQ+IKP +ST  +GQAASMGSLLL+AGE GMRF
Sbjct: 62  DNPAKEISMYINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLTAGEAGMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPN+RI++HQPSGG+ GQA+DI  HA +  K+K RLNEIYVK+ G+T ++VE  L+RD+
Sbjct: 122 SLPNSRIMVHQPSGGYQGQATDIMIHAAETQKLKDRLNEIYVKHTGQTLKKVENALERDN 181

Query: 189 IMSASEACDWGVVDKVLMSR 208
            MS  EA D+G++D+++ +R
Sbjct: 182 FMSPEEAKDFGLIDEIVENR 201


>gi|116243127|sp|Q0VQ90|CLPP_ALCBS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
          Length = 205

 Score =  284 bits (727), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 129/193 (66%), Positives = 161/193 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LGLVP+V+EQT RGERS+DIYSRLLKER++F+ GQ+EDHMA LI AQ+LFLE+ENP K+I
Sbjct: 11  LGLVPVVIEQTARGERSFDIYSRLLKERVIFMIGQVEDHMANLIVAQMLFLESENPDKDI 70

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQAASMG+ LL+AG  G RFALPNAR+
Sbjct: 71  HLYINSPGGSVTAGMSIYDTMQFIKPDVSTMCIGQAASMGAFLLTAGAAGKRFALPNARV 130

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQASDIE HA++I+KIK +LN +   + G+  E++EK  DRD+ MSA EA
Sbjct: 131 MIHQPLGGFQGQASDIEIHAKEILKIKGQLNSLLAHHTGQPIEQLEKDTDRDNFMSADEA 190

Query: 196 CDWGVVDKVLMSR 208
            ++G++D VL  R
Sbjct: 191 KEYGIIDAVLSQR 203


>gi|170751514|ref|YP_001757774.1| endopeptidase Clp [Methylobacterium radiotolerans JCM 2831]
 gi|226706463|sp|B1LW28|CLPP_METRJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|170658036|gb|ACB27091.1| Endopeptidase Clp [Methylobacterium radiotolerans JCM 2831]
          Length = 208

 Score =  284 bits (727), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 131/201 (65%), Positives = 171/201 (85%), Gaps = 1/201 (0%)

Query: 9   KDSEDVFL-GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           +D  DV+   LVPMVVEQ++RGER++DIYSRLL+ERI+F+TG +ED+ A+LI AQLLFLE
Sbjct: 2   RDPIDVYNNALVPMVVEQSSRGERAFDIYSRLLRERIIFLTGPVEDYGASLIVAQLLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AENP+KEIS YINSPGGVVT+G++IYDTMQFI+ P++T C+GQAASMGSLLL+AGE G R
Sbjct: 62  AENPKKEISFYINSPGGVVTSGLSIYDTMQFIRCPVTTLCVGQAASMGSLLLTAGEPGHR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           FALPNARI++HQPSGGF GQA+DI  HA++I  +KRRLNEIYVK+ G+ Y+ +   L+RD
Sbjct: 122 FALPNARIMVHQPSGGFQGQATDILIHAREIEALKRRLNEIYVKHTGRDYDTIHTALERD 181

Query: 188 HIMSASEACDWGVVDKVLMSR 208
           + M+A  A ++G++D+V+  R
Sbjct: 182 NFMTADAAKEFGLIDEVIEKR 202


>gi|163851839|ref|YP_001639882.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Methylobacterium extorquens PA1]
 gi|218530631|ref|YP_002421447.1| ATP-dependent Clp protease proteolytic subunit [Methylobacterium
           chloromethanicum CM4]
 gi|240139003|ref|YP_002963478.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           [Methylobacterium extorquens AM1]
 gi|254561598|ref|YP_003068693.1| ATP-dependent Clp protease proteolytic subunit [Methylobacterium
           extorquens DM4]
 gi|226706461|sp|A9W5F5|CLPP_METEP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|254763796|sp|B7KNT0|CLPP_METC4 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|163663444|gb|ABY30811.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Methylobacterium extorquens PA1]
 gi|218522934|gb|ACK83519.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Methylobacterium chloromethanicum CM4]
 gi|240008975|gb|ACS40201.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           [Methylobacterium extorquens AM1]
 gi|254268876|emb|CAX24837.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           [Methylobacterium extorquens DM4]
          Length = 208

 Score =  284 bits (727), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 131/201 (65%), Positives = 169/201 (84%), Gaps = 1/201 (0%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           +D  D F   LVPMVVEQ++RGER++DIYSRLL+ERI+F+TG +ED  A+LI AQLLFLE
Sbjct: 2   RDPVDYFHNSLVPMVVEQSSRGERAFDIYSRLLRERIIFLTGPVEDQGASLIVAQLLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AENP+KEIS YINSPGGVVT+G++IYDTMQFI+ P++T C+GQAASMGSLLL+AGE G R
Sbjct: 62  AENPKKEISFYINSPGGVVTSGLSIYDTMQFIRCPVTTLCVGQAASMGSLLLAAGEAGHR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           FALPNARI++HQPSGGF GQA+DI  HA++I  +K+RLNEIYVK+ G+ YE + + L+RD
Sbjct: 122 FALPNARIMVHQPSGGFQGQATDILIHAREIEALKKRLNEIYVKHTGREYETIHQALERD 181

Query: 188 HIMSASEACDWGVVDKVLMSR 208
           + M+A  A ++G++D +L  R
Sbjct: 182 NFMTADAAKEFGLIDDILHKR 202


>gi|304413826|ref|ZP_07395243.1| ATP-dependent serine protease [Candidatus Regiella insecticola
           LSR1]
 gi|304283546|gb|EFL91941.1| ATP-dependent serine protease [Candidatus Regiella insecticola
           LSR1]
          Length = 261

 Score =  284 bits (727), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 125/193 (64%), Positives = 162/193 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT+RGER+YDIYSRLLKER++F+TGQ+EDHMA LI AQ+LFLEAENP K+I
Sbjct: 50  MALVPMVVEQTSRGERAYDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPDKDI 109

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGGV+TAGM+IYDTMQFIKP + T C+GQA SMG+ LL+AG KG RF LPN+R+
Sbjct: 110 SLYINSPGGVITAGMSIYDTMQFIKPDVITLCIGQACSMGAFLLTAGTKGKRFCLPNSRV 169

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG+ GQ SDIE H+++I  +K R+N +  K+ GK  EE+EK  +RD+ +SA E+
Sbjct: 170 MIHQPLGGYQGQVSDIEIHSKEIRNVKNRMNTLMAKHTGKALEEIEKDTERDYFLSAEES 229

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD+VL +R
Sbjct: 230 VNYGLVDQVLCTR 242


>gi|110834071|ref|YP_692930.1| ATP-dependent Clp protease, proteolytic subunitclpp [Alcanivorax
           borkumensis SK2]
 gi|110647182|emb|CAL16658.1| ATP-dependent Clp protease, proteolytic subunitClpP [Alcanivorax
           borkumensis SK2]
          Length = 218

 Score =  284 bits (727), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 129/193 (66%), Positives = 161/193 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LGLVP+V+EQT RGERS+DIYSRLLKER++F+ GQ+EDHMA LI AQ+LFLE+ENP K+I
Sbjct: 24  LGLVPVVIEQTARGERSFDIYSRLLKERVIFMIGQVEDHMANLIVAQMLFLESENPDKDI 83

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQAASMG+ LL+AG  G RFALPNAR+
Sbjct: 84  HLYINSPGGSVTAGMSIYDTMQFIKPDVSTMCIGQAASMGAFLLTAGAAGKRFALPNARV 143

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQASDIE HA++I+KIK +LN +   + G+  E++EK  DRD+ MSA EA
Sbjct: 144 MIHQPLGGFQGQASDIEIHAKEILKIKGQLNSLLAHHTGQPIEQLEKDTDRDNFMSADEA 203

Query: 196 CDWGVVDKVLMSR 208
            ++G++D VL  R
Sbjct: 204 KEYGIIDAVLSQR 216


>gi|114327971|ref|YP_745128.1| ATP-dependent endopeptidase Clp proteolytic subunit clpP
           [Granulibacter bethesdensis CGDNIH1]
 gi|114316145|gb|ABI62205.1| ATP-dependent endopeptidase clp proteolytic subunit clpP
           [Granulibacter bethesdensis CGDNIH1]
          Length = 248

 Score =  284 bits (727), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 130/191 (68%), Positives = 164/191 (85%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQT RGERS+DIYSRLLKERI+F+TG + D ++ LICAQLLFLE+ENPQKEIS 
Sbjct: 47  LVPMVVEQTARGERSFDIYSRLLKERIIFLTGAVYDQVSALICAQLLFLESENPQKEISF 106

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVV+AG+AIYDTMQ+I+ P+ST C+GQAASMGSLLL AGEK  RFALPNAR+++
Sbjct: 107 YINSPGGVVSAGLAIYDTMQYIRSPVSTVCIGQAASMGSLLLCAGEKDKRFALPNARVMV 166

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQA+DIE  A++I+ +++RLNEIY ++ G++ E +E+ L+RD  MSA EA D
Sbjct: 167 HQPSGGAQGQATDIEIQAREILTLRKRLNEIYNRHTGQSIEAIERKLERDTYMSAEEARD 226

Query: 198 WGVVDKVLMSR 208
           +G+VD+V+  R
Sbjct: 227 FGLVDQVVERR 237


>gi|188581623|ref|YP_001925068.1| ATP-dependent Clp protease proteolytic subunit [Methylobacterium
           populi BJ001]
 gi|226706462|sp|B1Z9C7|CLPP_METPB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|179345121|gb|ACB80533.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Methylobacterium populi BJ001]
          Length = 208

 Score =  284 bits (727), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 131/201 (65%), Positives = 169/201 (84%), Gaps = 1/201 (0%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           +D  D F   LVPMVVEQ++RGER++DIYSRLL+ERI+F+TG +ED  A+LI AQLLFLE
Sbjct: 2   RDPVDYFHNSLVPMVVEQSSRGERAFDIYSRLLRERIIFLTGPVEDQGASLIVAQLLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AENP+KEIS YINSPGGVVT+G++IYDTMQFI+ P++T C+GQAASMGSLLL+AGE G R
Sbjct: 62  AENPKKEISFYINSPGGVVTSGLSIYDTMQFIRCPVTTLCVGQAASMGSLLLAAGEAGHR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           FALPNARI++HQPSGGF GQA+DI  HA++I  +K+RLNEIYVK+ G+ YE + + L+RD
Sbjct: 122 FALPNARIMVHQPSGGFQGQATDILIHAREIEALKKRLNEIYVKHTGRDYETIHQALERD 181

Query: 188 HIMSASEACDWGVVDKVLMSR 208
           + M+A  A ++G++D +L  R
Sbjct: 182 NFMTADAAKEFGLIDDILHKR 202


>gi|116243166|sp|Q1GGF6|CLPP_SILST RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
          Length = 210

 Score =  284 bits (727), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 125/191 (65%), Positives = 167/191 (87%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQT+RGER+YDI+SRLLKERI+F+ G + D M++LI AQLL LEAENP KEIS+
Sbjct: 12  LVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMSSLIVAQLLHLEAENPSKEISM 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G++IYDTMQ+IKP +ST  +GQAASMGSLLL+AGE GMRF+LPN+R+++
Sbjct: 72  YINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLTAGEAGMRFSLPNSRVMV 131

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG+ GQA+DI  HA++ +K+KRRLNEIYVK+ G+ Y+ +EK L+RD+ MS  +A +
Sbjct: 132 HQPSGGYQGQATDIMIHAEETLKLKRRLNEIYVKHTGQDYDTIEKALERDNFMSPEQAKE 191

Query: 198 WGVVDKVLMSR 208
           +G++D+++ +R
Sbjct: 192 FGLIDEIVENR 202


>gi|290474663|ref|YP_003467543.1| clpA-clpP ATP-dependent serine protease proteolytic subunit
           [Xenorhabdus bovienii SS-2004]
 gi|289173976|emb|CBJ80763.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
           [Xenorhabdus bovienii SS-2004]
          Length = 207

 Score =  284 bits (726), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 129/208 (62%), Positives = 169/208 (81%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  K+D     + LVPMVVEQT RGER++DIYSRLLK+RI+F+TG +EDHMA LI 
Sbjct: 1   MSYSG--KQDKYAPNMSLVPMVVEQTARGERAFDIYSRLLKDRIIFLTGPVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I+LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDINLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GGF GQA+DIE HAQ+I+K+K R+NE+  K+ GK  E++
Sbjct: 119 AGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAQEILKVKARMNELMAKHTGKPLEKI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
            +  +RD  +SA+E+ ++G+VD +   R
Sbjct: 179 VEDTERDRFLSAAESVEYGLVDSIFTQR 206


>gi|99081368|ref|YP_613522.1| ATP-dependent Clp protease proteolytic subunit [Ruegeria sp.
           TM1040]
 gi|99037648|gb|ABF64260.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ruegeria sp.
           TM1040]
          Length = 218

 Score =  284 bits (726), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 125/191 (65%), Positives = 167/191 (87%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQT+RGER+YDI+SRLLKERI+F+ G + D M++LI AQLL LEAENP KEIS+
Sbjct: 20  LVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMSSLIVAQLLHLEAENPSKEISM 79

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G++IYDTMQ+IKP +ST  +GQAASMGSLLL+AGE GMRF+LPN+R+++
Sbjct: 80  YINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLTAGEAGMRFSLPNSRVMV 139

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG+ GQA+DI  HA++ +K+KRRLNEIYVK+ G+ Y+ +EK L+RD+ MS  +A +
Sbjct: 140 HQPSGGYQGQATDIMIHAEETLKLKRRLNEIYVKHTGQDYDTIEKALERDNFMSPEQAKE 199

Query: 198 WGVVDKVLMSR 208
           +G++D+++ +R
Sbjct: 200 FGLIDEIVENR 210


>gi|238919011|ref|YP_002932525.1| ATP-dependent Clp protease, proteolytic subunit ClpP, putative
           [Edwardsiella ictaluri 93-146]
 gi|259585951|sp|C5BCJ6|CLPP_EDWI9 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|238868579|gb|ACR68290.1| ATP-dependent Clp protease, proteolytic subunit ClpP, putative
           [Edwardsiella ictaluri 93-146]
          Length = 206

 Score =  284 bits (726), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 128/193 (66%), Positives = 161/193 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT+RGERSYDI+SRLLKERI+F+TGQ+EDHMA LI AQ+LFLEAENP+K+I
Sbjct: 13  MALVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAENPEKDI 72

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMGS LL+AG +G RF LPN+R+
Sbjct: 73  HLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGSFLLAAGAQGKRFCLPNSRV 132

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DIE HA++I+ IK R+N +  K+ G+  E +E+  +RD  MSA +A
Sbjct: 133 MIHQPLGGFQGQATDIEIHAKEILSIKARMNTLMAKHSGQPIEVIERDTERDRFMSAQDA 192

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD VL  R
Sbjct: 193 VEYGLVDAVLTQR 205


>gi|296536161|ref|ZP_06898289.1| endopeptidase Clp [Roseomonas cervicalis ATCC 49957]
 gi|296263532|gb|EFH10029.1| endopeptidase Clp [Roseomonas cervicalis ATCC 49957]
          Length = 213

 Score =  284 bits (726), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 125/200 (62%), Positives = 171/200 (85%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  +++  LVPMV+EQT RGER++DIYSRLLKERI+F+TG + D M++LICAQLLFLE+
Sbjct: 4   RDPVELYNNLVPMVIEQTARGERAFDIYSRLLKERIIFLTGPVYDQMSSLICAQLLFLES 63

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP K+I+ YINSPGGVV+AG+A+YDTMQ+I+ P+ST C+G AASMGSLLL+AG KG RF
Sbjct: 64  ENPNKDIAFYINSPGGVVSAGLAMYDTMQYIRAPVSTVCLGMAASMGSLLLTAGAKGKRF 123

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           ALPN+RI++HQPSGG  GQA+DIE  A++I+ +++RLN+IYVK+ G+  EE+E+ L+RD 
Sbjct: 124 ALPNSRIMVHQPSGGAQGQATDIEIQAREILALRKRLNQIYVKHTGQPIEEIERKLERDS 183

Query: 189 IMSASEACDWGVVDKVLMSR 208
            MSA EA ++G++D+V++ R
Sbjct: 184 YMSAEEAKEFGLIDEVVLER 203


>gi|119774361|ref|YP_927101.1| ATP-dependent Clp protease proteolytic subunit [Shewanella
           amazonensis SB2B]
 gi|171704645|sp|A1S4X5|CLPP_SHEAM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|119766861|gb|ABL99431.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella
           amazonensis SB2B]
          Length = 202

 Score =  284 bits (726), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 130/197 (65%), Positives = 161/197 (81%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E VF  LVPMVVEQT +GERSYDIYSRLLKER++F+ GQ+E+HMA LI AQLLFLE+ENP
Sbjct: 6   ESVFNALVPMVVEQTAKGERSYDIYSRLLKERVIFLVGQVEEHMANLIVAQLLFLESENP 65

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            KEI LYINSPGG VTAGMAIYDTMQFIKP +ST C+GQA SMG+ LL+ GEKGMR  LP
Sbjct: 66  DKEIYLYINSPGGSVTAGMAIYDTMQFIKPKVSTVCIGQACSMGAFLLAGGEKGMRHCLP 125

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+R+++HQP GGF GQASDI  HAQ+I+ IK +LN++   + G+  E +E+  DRD+ MS
Sbjct: 126 NSRVMIHQPLGGFQGQASDIAIHAQEILGIKHKLNQMLSHHTGQPMEVIERDTDRDNFMS 185

Query: 192 ASEACDWGVVDKVLMSR 208
           A++A ++G++D VL SR
Sbjct: 186 ATQAVEYGLIDSVLTSR 202


>gi|94676878|ref|YP_588715.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
 gi|116243128|sp|Q1LTJ9|CLPP_BAUCH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|94220028|gb|ABF14187.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
          Length = 205

 Score =  284 bits (726), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 126/194 (64%), Positives = 166/194 (85%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVE+T RGERSYDI+SRLLKERI+F+TG++ED+MA +I AQ++FLEAENP+K+I
Sbjct: 12  MALVPMVVERTLRGERSYDIFSRLLKERIIFMTGKVEDYMANIIVAQMIFLEAENPEKDI 71

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +T+GM+IYDTMQFIKP +STFCMGQAASMG+ LL+AG KG RF LPNAR+
Sbjct: 72  YLYINSPGGNITSGMSIYDTMQFIKPNVSTFCMGQAASMGAFLLAAGTKGKRFCLPNARM 131

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DI+ HA++I+K+K R+NE+  K+ GKT + +E+  +RD  +SA+EA
Sbjct: 132 MIHQPMGGFQGQATDIQIHAKEILKVKNRMNELMAKHIGKTLQVIEQDTERDRFLSANEA 191

Query: 196 CDWGVVDKVLMSRI 209
            D+G+VD +L  RI
Sbjct: 192 VDYGLVDAILSHRI 205


>gi|93278470|pdb|1YG8|A Chain A, The Structure Of A V6a Variant Of Clpp.
 gi|93278471|pdb|1YG8|B Chain B, The Structure Of A V6a Variant Of Clpp.
 gi|93278472|pdb|1YG8|C Chain C, The Structure Of A V6a Variant Of Clpp.
 gi|93278473|pdb|1YG8|D Chain D, The Structure Of A V6a Variant Of Clpp.
 gi|93278474|pdb|1YG8|E Chain E, The Structure Of A V6a Variant Of Clpp.
 gi|93278475|pdb|1YG8|F Chain F, The Structure Of A V6a Variant Of Clpp.
 gi|93278476|pdb|1YG8|G Chain G, The Structure Of A V6a Variant Of Clpp.
 gi|93278477|pdb|1YG8|H Chain H, The Structure Of A V6a Variant Of Clpp.
 gi|93278478|pdb|1YG8|I Chain I, The Structure Of A V6a Variant Of Clpp.
 gi|93278479|pdb|1YG8|J Chain J, The Structure Of A V6a Variant Of Clpp.
 gi|93278480|pdb|1YG8|K Chain K, The Structure Of A V6a Variant Of Clpp.
 gi|93278481|pdb|1YG8|L Chain L, The Structure Of A V6a Variant Of Clpp.
 gi|93278482|pdb|1YG8|M Chain M, The Structure Of A V6a Variant Of Clpp.
 gi|93278483|pdb|1YG8|N Chain N, The Structure Of A V6a Variant Of Clpp.
 gi|93278484|pdb|1YG8|O Chain O, The Structure Of A V6a Variant Of Clpp.
 gi|93278485|pdb|1YG8|P Chain P, The Structure Of A V6a Variant Of Clpp.
 gi|93278486|pdb|1YG8|Q Chain Q, The Structure Of A V6a Variant Of Clpp.
 gi|93278487|pdb|1YG8|R Chain R, The Structure Of A V6a Variant Of Clpp.
 gi|93278488|pdb|1YG8|S Chain S, The Structure Of A V6a Variant Of Clpp.
 gi|93278489|pdb|1YG8|T Chain T, The Structure Of A V6a Variant Of Clpp.
 gi|93278490|pdb|1YG8|U Chain U, The Structure Of A V6a Variant Of Clpp.
 gi|93278491|pdb|1YG8|V Chain V, The Structure Of A V6a Variant Of Clpp.
 gi|93278492|pdb|1YG8|W Chain W, The Structure Of A V6a Variant Of Clpp.
 gi|93278493|pdb|1YG8|X Chain X, The Structure Of A V6a Variant Of Clpp.
 gi|93278494|pdb|1YG8|Y Chain Y, The Structure Of A V6a Variant Of Clpp.
 gi|93278495|pdb|1YG8|Z Chain Z, The Structure Of A V6a Variant Of Clpp.
 gi|93278496|pdb|1YG8|AA Chain a, The Structure Of A V6a Variant Of Clpp.
 gi|93278497|pdb|1YG8|BB Chain b, The Structure Of A V6a Variant Of Clpp
          Length = 193

 Score =  283 bits (725), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 124/192 (64%), Positives = 163/192 (84%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            L PMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI AQ+LFLEAENP+K+I 
Sbjct: 1   ALAPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIY 60

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+AG KG RF LPN+R++
Sbjct: 61  LYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVM 120

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG+ GQA+DIE HA++I+K+K R+NE+   + G++ E++E+  +RD  +SA EA 
Sbjct: 121 IHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAV 180

Query: 197 DWGVVDKVLMSR 208
           ++G+VD +L  R
Sbjct: 181 EYGLVDSILTHR 192


>gi|260459137|ref|ZP_05807392.1| Endopeptidase Clp [Mesorhizobium opportunistum WSM2075]
 gi|259034691|gb|EEW35947.1| Endopeptidase Clp [Mesorhizobium opportunistum WSM2075]
          Length = 201

 Score =  283 bits (725), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 128/191 (67%), Positives = 159/191 (83%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMV+EQ++RGER++DI+SRLL+ERI+F+ G+I D ++ L+CAQLL LE++NP KEISL
Sbjct: 7   LVPMVIEQSSRGERAFDIFSRLLRERIIFINGEINDDISALVCAQLLSLESDNPDKEISL 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G AIYDTMQ+I  P+ST CMG AASMGS LL AG  G R +LPNA ILL
Sbjct: 67  YINSPGGVVTSGFAIYDTMQYISCPVSTVCMGFAASMGSFLLMAGTPGRRISLPNATILL 126

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQASDI+RHA+ IVK KR + E+Y ++CG++YEEVE+TLDRDH M+A EA  
Sbjct: 127 HQPLGGFQGQASDIQRHAERIVKTKRHMAELYAQHCGRSYEEVERTLDRDHFMTAREAQA 186

Query: 198 WGVVDKVLMSR 208
           WG+VD V  +R
Sbjct: 187 WGIVDHVFDTR 197


>gi|198283159|ref|YP_002219480.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218667656|ref|YP_002425388.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247680|gb|ACH83273.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218519869|gb|ACK80455.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 214

 Score =  283 bits (725), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 132/193 (68%), Positives = 160/193 (82%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG VPMVVEQT RGERSYDIYSRLLKER+VF+ GQ+ED MA L+ AQLLFLEAENP K+I
Sbjct: 16  LGYVPMVVEQTGRGERSYDIYSRLLKERVVFLVGQVEDMMANLVVAQLLFLEAENPDKDI 75

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGG VTAGMAIYDTMQF++P IST C+GQAASMG++LL+AG +G R+ALPNARI
Sbjct: 76  ALYINSPGGSVTAGMAIYDTMQFVRPKISTVCIGQAASMGAVLLAAGAEGKRYALPNARI 135

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +LHQPSGGF GQA DIE H ++I++I+ RLN+I V + G+  E +E+ LDRD  MSA EA
Sbjct: 136 MLHQPSGGFQGQAHDIEIHTKEILRIRERLNDILVHHTGQGRERIEQDLDRDFFMSAEEA 195

Query: 196 CDWGVVDKVLMSR 208
             + +VD V+  R
Sbjct: 196 QTYHLVDAVISHR 208


>gi|88800033|ref|ZP_01115603.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Reinekea sp.
           MED297]
 gi|88777159|gb|EAR08364.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Reinekea sp.
           MED297]
          Length = 209

 Score =  283 bits (725), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 126/192 (65%), Positives = 164/192 (85%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMVVEQT+RGERS+DIYSRLLKE ++F+ GQ+ED+MA L+ AQLLFLE+ENP K+I 
Sbjct: 18  GLVPMVVEQTSRGERSFDIYSRLLKENVIFLVGQVEDYMANLVVAQLLFLESENPDKDIH 77

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGMAIYDTMQFIKP +ST C+GQAASMG+LLL+ G KG R+ LPN+R++
Sbjct: 78  LYINSPGGSVTAGMAIYDTMQFIKPDVSTMCIGQAASMGALLLTGGAKGKRYCLPNSRMM 137

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG+ GQA+DIE HA++I+++KRRLNEI   + G+  E+VE+  DRD+ M+A +A 
Sbjct: 138 IHQPLGGYQGQATDIEIHAREILEMKRRLNEIMAHHTGRPLEDVERDTDRDNFMTAEQAV 197

Query: 197 DWGVVDKVLMSR 208
           D+G+VD+V+ +R
Sbjct: 198 DYGLVDQVITNR 209


>gi|156935010|ref|YP_001438926.1| hypothetical protein ESA_02861 [Cronobacter sakazakii ATCC BAA-894]
 gi|156533264|gb|ABU78090.1| hypothetical protein ESA_02861 [Cronobacter sakazakii ATCC BAA-894]
          Length = 194

 Score =  283 bits (724), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 124/193 (64%), Positives = 164/193 (84%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT+RGERSYDI+SRLLKERI+F+TGQ+ED MA LI AQ+LFLEAENP+K+I
Sbjct: 1   MALVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDQMANLIVAQMLFLEAENPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+TAGM+IYDTMQFI+P +ST CMGQAASMG+ LL+AG KG RF LPN+R+
Sbjct: 61  YLYINSPGGVITAGMSIYDTMQFIQPDVSTICMGQAASMGAFLLTAGTKGKRFCLPNSRV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG+ GQA+DIE HA++I+K+K R+NE+  ++ G+  E++E+  +RD  +SA EA
Sbjct: 121 MIHQPLGGYQGQATDIEIHAREILKVKARMNELMAQHTGQPLEQIERDTERDRFLSAGEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD ++  R
Sbjct: 181 VEYGLVDSIMTHR 193


>gi|262277075|ref|ZP_06054868.1| ATP-dependent Clp protease, proteolytic subunit ClpP [alpha
           proteobacterium HIMB114]
 gi|262224178|gb|EEY74637.1| ATP-dependent Clp protease, proteolytic subunit ClpP [alpha
           proteobacterium HIMB114]
          Length = 204

 Score =  283 bits (724), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 131/201 (65%), Positives = 167/201 (83%), Gaps = 1/201 (0%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           KD  D+++  LVPMV+EQT RGERS+DIYSRLLKERI+F+TG I  ++++L+ AQLLFLE
Sbjct: 2   KDPFDIYMNTLVPMVIEQTPRGERSFDIYSRLLKERIIFLTGPINSYISSLVSAQLLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           +EN  KEI LYINSPGGVVT G+AIYDTMQFIKP +ST C+GQAASMGS LL+AGEKG+R
Sbjct: 62  SENNSKEIYLYINSPGGVVTDGLAIYDTMQFIKPTVSTLCIGQAASMGSFLLAAGEKGLR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
            +LPNARI++HQPS GF GQA+DIE H ++I+  K+RLNEIY K+ G+T E +++ L+RD
Sbjct: 122 MSLPNARIMVHQPSAGFQGQATDIEIHTKEILSTKKRLNEIYSKHTGQTVETIKEALERD 181

Query: 188 HIMSASEACDWGVVDKVLMSR 208
           + MSA EA  +G+VDKV+  R
Sbjct: 182 NFMSAEEAKKFGLVDKVVEKR 202


>gi|126733145|ref|ZP_01748892.1| Clp protease, putative [Roseobacter sp. CCS2]
 gi|126716011|gb|EBA12875.1| Clp protease, putative [Roseobacter sp. CCS2]
          Length = 206

 Score =  283 bits (724), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 125/200 (62%), Positives = 167/200 (83%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  + ++ LVPMVVEQT RGER+YDI+SRLLKERI+FV G + D M+ LI AQLL LE+
Sbjct: 2   QDPTETYMNLVPMVVEQTARGERAYDIFSRLLKERIIFVNGPVHDGMSQLIVAQLLHLES 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEIS+YINSPGGVVT+G++IYDTMQ+I+P +ST  +GQAASMGSLLL+AG +GMRF
Sbjct: 62  ENPKKEISMYINSPGGVVTSGLSIYDTMQYIRPKVSTLVIGQAASMGSLLLTAGSEGMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPN+R+++HQPSGG+ GQA+DI  HA +  K+K RLNEIYVK+ G T ++VE  L+RD+
Sbjct: 122 SLPNSRVMVHQPSGGYQGQATDIMIHAAETQKLKTRLNEIYVKHTGNTLKKVEAALERDN 181

Query: 189 IMSASEACDWGVVDKVLMSR 208
            MS  EA +WG++D+++ +R
Sbjct: 182 FMSPEEAKEWGLIDEIVENR 201


>gi|254455562|ref|ZP_05068991.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Candidatus
           Pelagibacter sp. HTCC7211]
 gi|207082564|gb|EDZ59990.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Candidatus
           Pelagibacter sp. HTCC7211]
          Length = 203

 Score =  283 bits (723), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 125/191 (65%), Positives = 164/191 (85%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQ+N+GER+YDIYSRLLKERI+F+TGQI D++A+L+ AQLLFLEAE+P+KEI L
Sbjct: 12  LVPMVVEQSNKGERAYDIYSRLLKERIIFLTGQINDNVASLVTAQLLFLEAEDPKKEIYL 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG+VTAG+ IYDTMQ++KP IST C+GQAASMGS LL+AG KG RF+LPN+R+++
Sbjct: 72  YINSPGGLVTAGLGIYDTMQYVKPDISTLCIGQAASMGSFLLAAGTKGKRFSLPNSRVMV 131

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPS GF GQ +DIE HA ++  +K+RLNEIY K+ GK+ +EV+  L+RD+ M+A  A D
Sbjct: 132 HQPSAGFQGQVTDIEIHANEVSSLKKRLNEIYSKHTGKSVDEVKAALERDNFMTADVAKD 191

Query: 198 WGVVDKVLMSR 208
           +G++D+V+  R
Sbjct: 192 FGLIDEVVEKR 202


>gi|163743918|ref|ZP_02151288.1| Protease subunit of ATP-dependent Clp protease [Phaeobacter
           gallaeciensis 2.10]
 gi|161382763|gb|EDQ07162.1| Protease subunit of ATP-dependent Clp protease [Phaeobacter
           gallaeciensis 2.10]
          Length = 202

 Score =  283 bits (723), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 125/197 (63%), Positives = 170/197 (86%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQT+RGER+YDI+SRLLKERI+F+ G + D M++LI AQLL LEAENP KEIS+
Sbjct: 4   LVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMSSLIVAQLLHLEAENPSKEISM 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G++IYDTMQ+IKP +ST  +GQAASMGSLLL+AGE GMRF+LPN+R+++
Sbjct: 64  YINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLTAGEAGMRFSLPNSRVMV 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGGF GQA+DI  HA++ +K+K+RLNEIYVK+ G+ Y+++   L+RD+ MS  EA D
Sbjct: 124 HQPSGGFQGQATDIMIHAEETLKLKKRLNEIYVKHTGQEYDKIVDALERDNFMSPEEAKD 183

Query: 198 WGVVDKVLMSRIDIEEK 214
           +G++D+++ +R  ++++
Sbjct: 184 FGLIDEIVENRSKLDDQ 200


>gi|149911805|ref|ZP_01900408.1| ATP-dependent Clp protease proteolytic subunit [Moritella sp. PE36]
 gi|149805105|gb|EDM65128.1| ATP-dependent Clp protease proteolytic subunit [Moritella sp. PE36]
          Length = 207

 Score =  283 bits (723), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 125/191 (65%), Positives = 160/191 (83%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQT +GERSYDIYSRLLK+R++F+TGQ+EDHMA L+ AQLLFLE+ENP K+I L
Sbjct: 16  LVPMVVEQTAKGERSYDIYSRLLKDRVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFL 75

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AGM+IYDTMQFIKP +ST CMG AASMG+ LL+ GEKG R ALPNA+I++
Sbjct: 76  YINSPGGSVSAGMSIYDTMQFIKPNVSTICMGMAASMGAFLLAGGEKGKRHALPNAKIMI 135

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG+ GQASDIE HA +I+K KR+LNEI  ++ G+ Y+ + +  DRD+ M+++EA D
Sbjct: 136 HQPLGGYQGQASDIEIHANEIIKTKRKLNEILAEHTGQEYDRLARDTDRDNFMTSAEAMD 195

Query: 198 WGVVDKVLMSR 208
           +G++D V+  R
Sbjct: 196 YGLIDTVITKR 206


>gi|119898362|ref|YP_933575.1| ATP-dependent Clp protease proteolytic subunit [Azoarcus sp. BH72]
 gi|166201798|sp|A1K783|CLPP_AZOSB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|119670775|emb|CAL94688.1| Endopeptidase Clp [Azoarcus sp. BH72]
          Length = 212

 Score =  283 bits (723), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 131/199 (65%), Positives = 163/199 (81%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           + V LGL+PMVVEQ+ RGERSYDIYSRLLKER+VF+ G + D  A LI AQLLFLE+ENP
Sbjct: 13  DPVGLGLIPMVVEQSGRGERSYDIYSRLLKERVVFLVGPVNDVTANLIVAQLLFLESENP 72

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+I  YINSPGG VTAG+AIYDTMQFIKP +ST C+GQAASMG+ LL+AGEKG RF LP
Sbjct: 73  DKDIYFYINSPGGSVTAGLAIYDTMQFIKPNVSTLCIGQAASMGAFLLAAGEKGKRFCLP 132

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+R+++HQP GGF GQASDIE HA++I+ ++ RLN +  K+ G+T E++EK  DRD+ MS
Sbjct: 133 NSRVMIHQPLGGFQGQASDIEIHAREILYLRERLNGMLAKHTGQTIEQIEKDTDRDNFMS 192

Query: 192 ASEACDWGVVDKVLMSRID 210
           A+ A ++G+VDKVL SR D
Sbjct: 193 ATAAVEYGLVDKVLTSRAD 211


>gi|301598440|pdb|3HLN|A Chain A, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598441|pdb|3HLN|B Chain B, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598442|pdb|3HLN|C Chain C, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598443|pdb|3HLN|D Chain D, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598444|pdb|3HLN|E Chain E, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598445|pdb|3HLN|F Chain F, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598446|pdb|3HLN|G Chain G, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598447|pdb|3HLN|H Chain H, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598448|pdb|3HLN|I Chain I, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598449|pdb|3HLN|J Chain J, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598450|pdb|3HLN|K Chain K, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598451|pdb|3HLN|L Chain L, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598452|pdb|3HLN|M Chain M, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598453|pdb|3HLN|N Chain N, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598454|pdb|3HLN|O Chain O, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598455|pdb|3HLN|P Chain P, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598456|pdb|3HLN|Q Chain Q, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598457|pdb|3HLN|R Chain R, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598458|pdb|3HLN|S Chain S, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598459|pdb|3HLN|T Chain T, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598460|pdb|3HLN|U Chain U, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598461|pdb|3HLN|V Chain V, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598462|pdb|3HLN|W Chain W, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598463|pdb|3HLN|X Chain X, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598464|pdb|3HLN|Y Chain Y, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598465|pdb|3HLN|Z Chain Z, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598466|pdb|3HLN|1 Chain 1, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598467|pdb|3HLN|2 Chain 2, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
          Length = 193

 Score =  282 bits (722), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 124/192 (64%), Positives = 163/192 (84%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI AQ+LFLEAENP+K+I 
Sbjct: 1   ALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIY 60

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+AG KG RF LPN+R++
Sbjct: 61  LYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVM 120

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG+ GQA+DIE H ++I+K+K R+NE+   + G++ E++E+  +RD  +SA EA 
Sbjct: 121 IHQPLGGYQGQATDIEIHCREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAV 180

Query: 197 DWGVVDKVLMSR 208
           ++G+VD +L  R
Sbjct: 181 EYGLVDSILTHR 192


>gi|218510872|ref|ZP_03508750.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli
           Brasil 5]
          Length = 153

 Score =  282 bits (722), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 128/153 (83%), Positives = 145/153 (94%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQTNRGERSYDIYSRLLKERI+F+TG +EDHMATL+CAQLLFLEAENP+KEI
Sbjct: 1   MALVPMVVEQTNRGERSYDIYSRLLKERIIFLTGAVEDHMATLVCAQLLFLEAENPKKEI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGGVVTAGMAIYDTMQFIKP +ST C+GQAASMGSLLL+AG K MRFA PN+RI
Sbjct: 61  ALYINSPGGVVTAGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLAAGHKDMRFATPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           ++HQPSGGF GQASDIERHA+DI+K+KRRLNE+
Sbjct: 121 MVHQPSGGFQGQASDIERHARDILKMKRRLNEV 153


>gi|296112317|ref|YP_003626255.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
           catarrhalis RH4]
 gi|295920011|gb|ADG60362.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
           catarrhalis RH4]
          Length = 217

 Score =  282 bits (722), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 128/192 (66%), Positives = 163/192 (84%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMV+EQ+ RGERS+DI+SRLL+ER++F+TGQ+ED+MA LI AQLLFLEA+NP+K+I 
Sbjct: 22  ALVPMVIEQSGRGERSFDIFSRLLRERVIFLTGQVEDNMANLIVAQLLFLEADNPEKDIH 81

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGVVTAGMAIYDTM FIKP +ST CMGQAASMGS LLSAGEKG R+AL N+R++
Sbjct: 82  LYINSPGGVVTAGMAIYDTMNFIKPHVSTICMGQAASMGSFLLSAGEKGKRYALANSRVM 141

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+++K +LN +  ++ G+  E++E+  DRDH MSA +A 
Sbjct: 142 IHQPLGGFRGQASDIEIHAREIIELKAKLNRLLAEHTGQPIEKLERDTDRDHFMSAEQAR 201

Query: 197 DWGVVDKVLMSR 208
           D+G+VD VL  R
Sbjct: 202 DYGLVDVVLDKR 213


>gi|126741244|ref|ZP_01756923.1| Protease subunit of ATP-dependent Clp protease [Roseobacter sp.
           SK209-2-6]
 gi|126717649|gb|EBA14372.1| Protease subunit of ATP-dependent Clp protease [Roseobacter sp.
           SK209-2-6]
          Length = 210

 Score =  282 bits (722), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 126/191 (65%), Positives = 166/191 (86%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQT+RGER+YDI+SRLLKERI+F+ G + D M++LI AQLL LEAENP KEIS+
Sbjct: 12  LVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMSSLIVAQLLHLEAENPSKEISM 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G++IYDTMQ+IKP +ST  +GQAASMGSLLL+AGE GMRF+LPN+R+++
Sbjct: 72  YINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLTAGEAGMRFSLPNSRVMV 131

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGGF GQA+DI  HA++ +K+KRRLNEIYVK+ G+  ++VE  L+RD+ MS  EA +
Sbjct: 132 HQPSGGFQGQATDIMIHAEETLKLKRRLNEIYVKHTGQELDKVEAALERDNFMSPEEAKE 191

Query: 198 WGVVDKVLMSR 208
           +G++D+++ +R
Sbjct: 192 FGLIDEIVENR 202


>gi|256823172|ref|YP_003147135.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Kangiella
           koreensis DSM 16069]
 gi|256796711|gb|ACV27367.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Kangiella
           koreensis DSM 16069]
          Length = 205

 Score =  282 bits (722), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 126/192 (65%), Positives = 160/192 (83%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GL+PMVVEQT+RGERSYDIYSRLLKER++F  GQ+ED+MA  I AQ+LFLE++NP K+I 
Sbjct: 11  GLIPMVVEQTSRGERSYDIYSRLLKERVIFCVGQVEDYMANSIVAQMLFLESDNPDKDIY 70

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGVVTAG++IYDTMQFI+P +ST C+GQAASMG+LLL+ G KG R  LPN+R++
Sbjct: 71  LYINSPGGVVTAGLSIYDTMQFIRPDVSTVCVGQAASMGALLLTGGAKGKRHTLPNSRMM 130

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDI  HAQ+I ++K RLN I   +CGKT EEVE+  DRD+ ++A EA 
Sbjct: 131 IHQPLGGFQGQASDIAIHAQEITELKHRLNSIMAHHCGKTVEEVERDTDRDNFLTADEAV 190

Query: 197 DWGVVDKVLMSR 208
           ++G+VD ++ SR
Sbjct: 191 EYGLVDSIISSR 202


>gi|13470920|ref|NP_102489.1| ATP-dependent protease proteolytic subunit ClpP-like protein
           [Mesorhizobium loti MAFF303099]
 gi|18202652|sp|Q98M38|CLPP1_RHILO RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|14021663|dbj|BAB48275.1| ATP-dependent protease proteolytic subunit ClpP-like protein
           [Mesorhizobium loti MAFF303099]
          Length = 201

 Score =  282 bits (722), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 127/191 (66%), Positives = 159/191 (83%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMV+EQ++RGER++DI+SRLL+ERI+F+ G+I D ++ L+CAQLL LE++NP KEISL
Sbjct: 7   LVPMVIEQSSRGERAFDIFSRLLRERIIFINGEINDDVSALVCAQLLSLESDNPDKEISL 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G AIYDTMQ++  P+ST CMG AASMGS LL AG  G R ALPNA ILL
Sbjct: 67  YINSPGGVVTSGFAIYDTMQYVSCPVSTVCMGFAASMGSFLLMAGTPGRRIALPNATILL 126

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQASDI+RHA+ I K K+R+ E+Y ++CG++YEEVE+TLDRDH M+A EA  
Sbjct: 127 HQPLGGFQGQASDIQRHAERIGKTKQRMAELYAQHCGRSYEEVERTLDRDHFMTAREAQT 186

Query: 198 WGVVDKVLMSR 208
           WG+VD V  +R
Sbjct: 187 WGIVDHVFDTR 197


>gi|110633884|ref|YP_674092.1| ATP-dependent Clp protease proteolytic subunit ClpP [Mesorhizobium
           sp. BNC1]
 gi|116243115|sp|Q11I48|CLPP2_MESSB RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|110284868|gb|ABG62927.1| ATP-dependent Clp protease proteolytic subunit ClpP [Chelativorans
           sp. BNC1]
          Length = 208

 Score =  282 bits (722), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 125/193 (64%), Positives = 162/193 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+PMVVEQ+ RGERS+DI+SRLL+ERI+F+ GQ++D+ A L+CAQ+L LEAENP+KEI
Sbjct: 5   MNLIPMVVEQSARGERSFDIFSRLLRERIIFLNGQVDDNSAALVCAQMLHLEAENPKKEI 64

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           + YINSPGGVV++G AIYDTMQFIK P++T C+G AASMGS LL AGE+GMR ALPNA I
Sbjct: 65  AFYINSPGGVVSSGFAIYDTMQFIKCPVATLCLGTAASMGSFLLMAGERGMRVALPNASI 124

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +LHQP GGF GQASDIERHAQ++++ KRR+  +Y ++CG+  E+VE+TLDRD  M+A +A
Sbjct: 125 ILHQPLGGFQGQASDIERHAQNVMRHKRRMIRLYAEHCGRAEEDVERTLDRDFFMTAEDA 184

Query: 196 CDWGVVDKVLMSR 208
            +WG+VD V   R
Sbjct: 185 REWGLVDHVYRRR 197


>gi|326561827|gb|EGE12162.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
           catarrhalis 7169]
 gi|326563259|gb|EGE13526.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
           catarrhalis 46P47B1]
 gi|326563373|gb|EGE13638.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
           catarrhalis 12P80B1]
 gi|326565911|gb|EGE16072.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
           catarrhalis 103P14B1]
 gi|326568952|gb|EGE19021.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
           catarrhalis BC1]
 gi|326569251|gb|EGE19312.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
           catarrhalis BC7]
 gi|326571926|gb|EGE21931.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
           catarrhalis BC8]
 gi|326575439|gb|EGE25364.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
           catarrhalis 101P30B1]
 gi|326576473|gb|EGE26381.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
           catarrhalis CO72]
 gi|326577944|gb|EGE27808.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
           catarrhalis O35E]
          Length = 217

 Score =  282 bits (721), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 128/192 (66%), Positives = 163/192 (84%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMV+EQ+ RGERS+DI+SRLL+ER++F+TGQ+ED+MA LI AQLLFLEA+NP+K+I 
Sbjct: 22  ALVPMVIEQSGRGERSFDIFSRLLRERVIFLTGQVEDNMANLIVAQLLFLEADNPEKDIH 81

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGVVTAGMAIYDTM FIKP +ST CMGQAASMGS LLSAGEKG R+AL N+R++
Sbjct: 82  LYINSPGGVVTAGMAIYDTMNFIKPHVSTICMGQAASMGSFLLSAGEKGKRYALANSRVM 141

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+++K +LN +  ++ G+  E++E+  DRDH MSA +A 
Sbjct: 142 IHQPLGGFRGQASDIEIHAREIIELKAKLNRLLAEHTGQPIEKLERDTDRDHFMSAEQAR 201

Query: 197 DWGVVDKVLMSR 208
           D+G+VD VL  R
Sbjct: 202 DYGLVDVVLDKR 213


>gi|85713354|ref|ZP_01044368.1| Protease subunit of ATP-dependent Clp protease [Idiomarina baltica
           OS145]
 gi|85692821|gb|EAQ30805.1| Protease subunit of ATP-dependent Clp protease [Idiomarina baltica
           OS145]
          Length = 205

 Score =  282 bits (721), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 128/200 (64%), Positives = 160/200 (80%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
            D +D    LVPMVVEQT++GERSYDIYSRLLKER++F  GQ+EDHMA LI AQLLFLE+
Sbjct: 3   NDIQDPMAQLVPMVVEQTSKGERSYDIYSRLLKERVIFCCGQVEDHMANLIVAQLLFLES 62

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           +NP K+I LYINSPGGVVTAGMAIYDTM+FIKP +ST CMGQAASMG+ LL+ G +G R+
Sbjct: 63  DNPDKDIYLYINSPGGVVTAGMAIYDTMRFIKPDVSTVCMGQAASMGAFLLAGGAQGKRY 122

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
            LPN+R+++HQP GGF GQASD E HA+ I+ +K RLN +  +N G+ YE+V +  DRDH
Sbjct: 123 CLPNSRVMIHQPLGGFQGQASDFEIHAKQILDLKERLNRMLAENTGQDYEKVARDTDRDH 182

Query: 189 IMSASEACDWGVVDKVLMSR 208
            ++A EA D+G+VD +L  R
Sbjct: 183 FLTAPEAVDYGLVDGILNKR 202


>gi|56460113|ref|YP_155394.1| ATP-dependent Clp protease proteolytic subunit [Idiomarina
           loihiensis L2TR]
 gi|67460202|sp|Q5QXN8|CLPP_IDILO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|56179123|gb|AAV81845.1| Protease subunit of ATP-dependent Clp protease [Idiomarina
           loihiensis L2TR]
          Length = 206

 Score =  282 bits (721), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 128/199 (64%), Positives = 160/199 (80%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           D +D    LVPMVVEQT++GERSYDIYSRLLKER++F  GQ+EDHMA LI AQLLFLE++
Sbjct: 4   DIQDPMAQLVPMVVEQTSKGERSYDIYSRLLKERVIFCCGQVEDHMANLIVAQLLFLESD 63

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP K+I LYINSPGGVVTAGMAIYDTM+FIKP +ST CMGQAASMG+ LL+ G +G R+ 
Sbjct: 64  NPDKDIYLYINSPGGVVTAGMAIYDTMRFIKPDVSTVCMGQAASMGAFLLAGGAQGKRYC 123

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPN+R+++HQP GGF GQASD E HA+ I+ +K RLN +  +N G+ YE+V +  DRDH 
Sbjct: 124 LPNSRVMIHQPLGGFQGQASDFEIHAKQILDLKERLNRMLAENTGQDYEKVARDTDRDHF 183

Query: 190 MSASEACDWGVVDKVLMSR 208
           +SA E+ D+G+VD +L  R
Sbjct: 184 LSAEESIDYGLVDGILRQR 202


>gi|117926916|ref|YP_867533.1| ATP-dependent Clp protease proteolytic subunit ClpP [Magnetococcus
           sp. MC-1]
 gi|254763794|sp|A0LDT4|CLPP_MAGSM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|117610672|gb|ABK46127.1| ATP-dependent Clp protease proteolytic subunit ClpP [Magnetococcus
           sp. MC-1]
          Length = 202

 Score =  282 bits (721), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 125/193 (64%), Positives = 162/193 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVE TNRGER+YDIYSRLLKER+VF+ GQ+E+HMA L+ AQLLFLE+ENP+K+I
Sbjct: 1   MSLVPMVVETTNRGERAYDIYSRLLKERVVFLVGQVEEHMANLVVAQLLFLESENPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMAIYDTMQFI+P +ST C+GQAASMG++LL+AGE G R  LPNAR+
Sbjct: 61  HLYINSPGGSVTAGMAIYDTMQFIRPSVSTLCIGQAASMGAVLLAAGEAGKRLVLPNARV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGFSGQASD E HA++I++I+  LN++   + GK  E+V+   +RD+ +SA+EA
Sbjct: 121 MIHQPLGGFSGQASDFEIHAREILRIRENLNQVLSHHTGKPLEQVQLDTERDNFLSATEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G+VDKV+  R
Sbjct: 181 VEYGLVDKVISHR 193


>gi|319783748|ref|YP_004143224.1| endopeptidase Clp [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317169636|gb|ADV13174.1| Endopeptidase Clp [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 201

 Score =  282 bits (721), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 127/191 (66%), Positives = 158/191 (82%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMV+EQ++RGER++DI+SRLL+ERI+F+ G+I D ++ L+CAQLL LE++NP KEISL
Sbjct: 7   LVPMVIEQSSRGERAFDIFSRLLRERIIFINGEINDDISALVCAQLLSLESDNPDKEISL 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G AIYDTMQ+I  P+ST CMG AASMGS LL AG  G R +LPNA ILL
Sbjct: 67  YINSPGGVVTSGFAIYDTMQYISCPVSTVCMGFAASMGSFLLMAGTPGRRISLPNATILL 126

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQASDI+RHA+ I + KR + E+Y ++CG+TYEEVE+TLDRDH M+A EA  
Sbjct: 127 HQPLGGFQGQASDIQRHAERIGRTKRHMTELYAQHCGRTYEEVERTLDRDHFMTAREAQA 186

Query: 198 WGVVDKVLMSR 208
           WG+VD V  +R
Sbjct: 187 WGIVDHVFDTR 197


>gi|238898003|ref|YP_002923683.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|259585958|sp|C4K4P2|CLPP_HAMD5 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|229465761|gb|ACQ67535.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 215

 Score =  282 bits (721), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 127/201 (63%), Positives = 166/201 (82%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT+RGER+YDIYSR+LKER++F+TGQ+E+HMA LI AQ+LFLEAENP+K+I
Sbjct: 14  MTLVPMVVEQTSRGERAYDIYSRMLKERVIFLTGQVEEHMANLIVAQMLFLEAENPEKDI 73

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+TAGM+IYDTMQFI P +ST C+GQA SMG+ LL+AG K  R+ LPNAR+
Sbjct: 74  YLYINSPGGVITAGMSIYDTMQFITPDVSTICIGQACSMGAFLLAAGAKSKRYCLPNARV 133

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQASDIE HA++I+K+K+R+N++   +  KT + +EK  +RDH +SA EA
Sbjct: 134 MIHQPLGGFQGQASDIEIHAKEILKVKKRMNDLMAIHTKKTLKIIEKDTERDHFLSAEEA 193

Query: 196 CDWGVVDKVLMSRIDIEEKSK 216
             +G+VD VL  R D++  SK
Sbjct: 194 KKYGLVDCVLTERKDVKNFSK 214


>gi|237653230|ref|YP_002889544.1| ATP-dependent Clp protease proteolytic subunit [Thauera sp. MZ1T]
 gi|237624477|gb|ACR01167.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thauera sp.
           MZ1T]
          Length = 212

 Score =  281 bits (720), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 132/201 (65%), Positives = 162/201 (80%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           D   V LGLVPMVVEQ+ RGER+YDIYSRLLKER+VF+ G + D  A LI AQLLFLE+E
Sbjct: 11  DWNPVGLGLVPMVVEQSGRGERAYDIYSRLLKERVVFLVGPVNDVTANLIVAQLLFLESE 70

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP K+I  YINSPGG VTAGMAIYDTMQFIKP +ST C+GQAASMG+ LL+AGEKG RF 
Sbjct: 71  NPDKDIYFYINSPGGSVTAGMAIYDTMQFIKPNVSTLCIGQAASMGAFLLAAGEKGKRFI 130

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPN+R+++HQP GGF GQASDIE HA++I+ ++ RLN++  K+ G+  E +EK  DRD+ 
Sbjct: 131 LPNSRVMIHQPLGGFQGQASDIEIHAREILYLRSRLNDMLSKHTGQALERIEKDTDRDNF 190

Query: 190 MSASEACDWGVVDKVLMSRID 210
           MSA+ A ++G+VDKVL SR D
Sbjct: 191 MSATAAVEYGLVDKVLTSRDD 211


>gi|67459164|ref|YP_246788.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia felis
           URRWXCal2]
 gi|75536404|sp|Q4ULF0|CLPP_RICFE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|67004697|gb|AAY61623.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia felis
           URRWXCal2]
          Length = 201

 Score =  281 bits (720), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 124/193 (64%), Positives = 164/193 (84%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP+V+EQT+RGER+YDIYSRLLKERI+FV   +EDHMA L+ AQLLFLEAENP+K+I
Sbjct: 1   MSYVPIVIEQTSRGERAYDIYSRLLKERIIFVCSTVEDHMANLVVAQLLFLEAENPKKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG+AIYDTMQ+IKP ++T C+GQA SMGSLLL  GEKGMR++LP++RI
Sbjct: 61  YMYINSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSLLLCGGEKGMRYSLPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG+ GQA+DIE HAQ+ +KIKR LNE+Y K+ G+  + +EK+++RD+ MS  EA
Sbjct: 121 MIHQPSGGYRGQATDIEIHAQETLKIKRLLNELYSKHTGQELKHIEKSMERDNFMSPEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D ++ SR
Sbjct: 181 KKFGIIDNIISSR 193


>gi|163736126|ref|ZP_02143545.1| Endopeptidase Clp [Phaeobacter gallaeciensis BS107]
 gi|161389996|gb|EDQ14346.1| ATP-dependent Clp protease proteolytic subunit [Phaeobacter
           gallaeciensis BS107]
          Length = 202

 Score =  281 bits (720), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 124/197 (62%), Positives = 170/197 (86%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQT+RGER+YDI+SRLLKERI+F+ G + D M++LI AQLL LEAENP KEIS+
Sbjct: 4   LVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMSSLIVAQLLHLEAENPSKEISM 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G++IYDTMQ+IKP +ST  +GQAASMGSLLL+AGE GMRF+LPN+R+++
Sbjct: 64  YINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLTAGEAGMRFSLPNSRVMV 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGGF GQA+DI  HA++ +K+K+RLNEIYVK+ G+ Y+++   L+RD+ MS  +A D
Sbjct: 124 HQPSGGFQGQATDIMIHAEETLKLKKRLNEIYVKHTGQEYDKIVDALERDNFMSPEDAKD 183

Query: 198 WGVVDKVLMSRIDIEEK 214
           +G++D+++ +R  ++++
Sbjct: 184 FGLIDEIVENRSKLDDQ 200


>gi|149186485|ref|ZP_01864797.1| ATP-dependent Clp protease [Erythrobacter sp. SD-21]
 gi|148829712|gb|EDL48151.1| ATP-dependent Clp protease [Erythrobacter sp. SD-21]
          Length = 241

 Score =  281 bits (720), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 130/195 (66%), Positives = 165/195 (84%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP VVEQ++RGER++DI+SRLL+ERIVFVTGQ+ED MA+LI AQLLFLE+ENP K IS+
Sbjct: 29  LVPTVVEQSSRGERAFDIFSRLLRERIVFVTGQVEDTMASLIVAQLLFLESENPSKPISM 88

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVTAGMAI+DTMQ+IKP +ST C+GQAASMGS LL+AGE GMR ALPNARI++
Sbjct: 89  YINSPGGVVTAGMAIHDTMQYIKPRVSTVCIGQAASMGSFLLAAGEPGMRIALPNARIMV 148

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  G ASDIE  A++I++I++R+N++YV+  GK+  E+EK +DRD  + A EA  
Sbjct: 149 HQPSGGARGMASDIEIQAREILRIRKRMNDLYVQYTGKSLTEIEKAMDRDTFLEAEEAMK 208

Query: 198 WGVVDKVLMSRIDIE 212
           +G+VDKV  +R + E
Sbjct: 209 FGIVDKVFEARPENE 223


>gi|331005198|ref|ZP_08328592.1| ATP-dependent Clp protease proteolytic subunit [gamma
           proteobacterium IMCC1989]
 gi|330420980|gb|EGG95252.1| ATP-dependent Clp protease proteolytic subunit [gamma
           proteobacterium IMCC1989]
          Length = 208

 Score =  281 bits (720), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 128/193 (66%), Positives = 159/193 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMVVEQT RGERSYDIYSRLLKER++F+ GQ+EDHMA L+ AQLLFLEAENP K+I 
Sbjct: 14  GLVPMVVEQTARGERSYDIYSRLLKERVIFMVGQVEDHMANLVVAQLLFLEAENPDKDIH 73

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+ LL+AG  G RF LPNAR +
Sbjct: 74  LYINSPGGSVTAGMSIYDTMQFIKPDVSTMCIGQACSMGAFLLNAGAPGKRFCLPNARTM 133

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  GQA+DI   A++I+KI++RLNEI  K+ G+ ++E+ +  +RD  MSA E+ 
Sbjct: 134 IHQPSGGAQGQATDISIQAEEILKIRQRLNEIMAKHSGRDFDEIARDTERDRFMSADESK 193

Query: 197 DWGVVDKVLMSRI 209
           ++G++D VL SRI
Sbjct: 194 EYGLIDDVLTSRI 206


>gi|326386907|ref|ZP_08208521.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326208587|gb|EGD59390.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 231

 Score =  281 bits (720), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 131/205 (63%), Positives = 169/205 (82%), Gaps = 1/205 (0%)

Query: 5   GCAKKDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQL 63
           G   K + D   G L+P+VVEQ++RGERS+DIYSRLL+ERI+FVTG+IEDHMA++I AQL
Sbjct: 9   GAQGKFTTDPVTGALIPVVVEQSSRGERSFDIYSRLLRERIIFVTGEIEDHMASVIVAQL 68

Query: 64  LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           LFLE+ENP K+IS+YINSPGGVVTAGMAI+DTM++I+P +ST C+GQA SMGS LL+AGE
Sbjct: 69  LFLESENPSKDISMYINSPGGVVTAGMAIHDTMKYIRPRVSTVCIGQACSMGSFLLAAGE 128

Query: 124 KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
            G+R ALPNARI++HQPSGG  G ASDIE  A++I++I+ R+N++YVK  G+  EE+E+ 
Sbjct: 129 PGLRVALPNARIMIHQPSGGARGMASDIEIQAREILRIRTRMNDLYVKYTGRQLEEIERA 188

Query: 184 LDRDHIMSASEACDWGVVDKVLMSR 208
           LDRD  + A EA  +G+VDKV  SR
Sbjct: 189 LDRDTFLEADEALAFGLVDKVFESR 213


>gi|157803694|ref|YP_001492243.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
           canadensis str. McKiel]
 gi|166214705|sp|A8EYM5|CLPP_RICCK RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|157784957|gb|ABV73458.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
           canadensis str. McKiel]
          Length = 201

 Score =  281 bits (719), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 125/193 (64%), Positives = 163/193 (84%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP+V+EQT+RGER+YDIYSRLLKERI+FV   +EDHMA LI AQLLFLEAENP+K+I
Sbjct: 1   MSYVPIVIEQTSRGERAYDIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAENPKKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG+AIYDTMQ+IKP ++T C+GQA SMGS LL  GEKGMR++LP++RI
Sbjct: 61  YMYINSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSFLLCGGEKGMRYSLPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG+ GQA+DIE HAQ+ +KIKR LNE+Y K+ G+  + +EK+++RD+ MS  EA
Sbjct: 121 MIHQPSGGYQGQATDIEIHAQETLKIKRLLNELYSKHTGQDVKHIEKSMERDNFMSPEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD ++ SR
Sbjct: 181 KKFGIVDNIISSR 193


>gi|56551844|ref|YP_162683.1| ATP-dependent Clp protease proteolytic subunit [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|241761834|ref|ZP_04759920.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Zymomonas
           mobilis subsp. mobilis ATCC 10988]
 gi|260752594|ref|YP_003225487.1| ATP-dependent Clp protease proteolytic subunit [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
 gi|67460187|sp|Q5NNY8|CLPP_ZYMMO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|56543418|gb|AAV89572.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Zymomonas
           mobilis subsp. mobilis ZM4]
 gi|241373748|gb|EER63308.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Zymomonas
           mobilis subsp. mobilis ATCC 10988]
 gi|258551957|gb|ACV74903.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Zymomonas
           mobilis subsp. mobilis NCIMB 11163]
          Length = 210

 Score =  281 bits (719), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 129/206 (62%), Positives = 168/206 (81%), Gaps = 1/206 (0%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           D  D+   L+PMVVEQ+NRGERS+DIYSRLL+ERI+FVTGQ+EDHMA++ICAQLLFLEAE
Sbjct: 4   DHADIVNALIPMVVEQSNRGERSFDIYSRLLRERIIFVTGQVEDHMASVICAQLLFLEAE 63

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP+K+I LYINSPGGVVTAG+AI+DTMQ+I+P + T C+GQAASMGS LL+AGE GMR A
Sbjct: 64  NPKKDIFLYINSPGGVVTAGLAIHDTMQYIRPKVGTLCIGQAASMGSFLLAAGEPGMRVA 123

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
             N+RI++HQPSGG  G A+DIE  A++I+++++RLN +Y K   +  EE+EK +DRD+ 
Sbjct: 124 TTNSRIMIHQPSGGAQGMAADIEIQAREILRMRKRLNALYAKYTNQPIEEIEKAMDRDNF 183

Query: 190 MSASEACDWGVVDKVLMSR-IDIEEK 214
           + A EA  +G++DKV   R +  EEK
Sbjct: 184 LEADEAKAFGLIDKVFDKRPVASEEK 209


>gi|157964626|ref|YP_001499450.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
           massiliae MTU5]
 gi|157844402|gb|ABV84903.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
           massiliae MTU5]
          Length = 216

 Score =  281 bits (719), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 125/197 (63%), Positives = 165/197 (83%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E + +  VP+V+E T+RGER+YDIYSRLLKERI+FV   +EDHMA LI AQLLFLEAENP
Sbjct: 12  EKILMSYVPIVIEPTSRGERAYDIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAENP 71

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+I +YINSPGGVVTAG+AIYDTMQ+IKP ++T C+GQA SMGSLLL  GE+GMR++LP
Sbjct: 72  KKDIYIYINSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSLLLCGGEQGMRYSLP 131

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           ++RI++HQPSGG+ GQA+DIE HAQ+ +KIKR LNE+Y K+ G+  + +EK+++RD+ MS
Sbjct: 132 HSRIMIHQPSGGYKGQATDIEIHAQETLKIKRLLNELYSKHTGQELKHIEKSMERDNFMS 191

Query: 192 ASEACDWGVVDKVLMSR 208
             EA  +G+VD ++ SR
Sbjct: 192 PEEAKKFGLVDNIISSR 208


>gi|229586800|ref|YP_002845301.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia africae
           ESF-5]
 gi|228021850|gb|ACP53558.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia africae
           ESF-5]
          Length = 216

 Score =  281 bits (719), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 126/197 (63%), Positives = 164/197 (83%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E + +  VP+V+E T+RGER+YDIYSRLLKERI+FV   +EDHMA LI AQLLFLEAENP
Sbjct: 12  EKILMSYVPIVIEPTSRGERAYDIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAENP 71

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+I +YINSPGGVVTAG+AIYDTMQ+IKP ++T C+GQA SMGSLLL  GEKGMR++LP
Sbjct: 72  KKDIYMYINSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSLLLCGGEKGMRYSLP 131

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           ++RI++HQPSGG+ GQA+DIE HAQ+ +KIKR LNE+Y K+  +  + +EK+++RD+ MS
Sbjct: 132 HSRIMIHQPSGGYKGQATDIEIHAQETLKIKRLLNELYSKHTEQELKHIEKSMERDNFMS 191

Query: 192 ASEACDWGVVDKVLMSR 208
             EA  +G+VD +L SR
Sbjct: 192 PEEAKKFGLVDNILSSR 208


>gi|85707624|ref|ZP_01038690.1| ATP-dependent Clp protease [Erythrobacter sp. NAP1]
 gi|85689158|gb|EAQ29161.1| ATP-dependent Clp protease [Erythrobacter sp. NAP1]
          Length = 235

 Score =  281 bits (718), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 129/191 (67%), Positives = 163/191 (85%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP VVEQ++RGER++DI+SRLL+ERIVFVTGQ+ED MA+LI AQLLFLE+ENP K IS+
Sbjct: 27  LVPTVVEQSSRGERAFDIFSRLLRERIVFVTGQVEDTMASLIVAQLLFLESENPSKPISM 86

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVTAGMAI+DTMQ+IKP +ST C+GQAASMGS LL+AGE GMR ALPNARI++
Sbjct: 87  YINSPGGVVTAGMAIHDTMQYIKPRVSTVCIGQAASMGSFLLAAGEPGMRVALPNARIMV 146

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  G ASDIE  A++I++I+ R+N++YVK  G++ +E+EK +DRD  + A EA  
Sbjct: 147 HQPSGGARGMASDIEIQAREILRIRSRMNDLYVKYTGQSLDEIEKAMDRDTFLEAEEAMK 206

Query: 198 WGVVDKVLMSR 208
           +G+VDKV  +R
Sbjct: 207 FGLVDKVFETR 217


>gi|89073230|ref|ZP_01159760.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium sp.
           SKA34]
 gi|90579278|ref|ZP_01235088.1| ATP-dependent Clp protease proteolytic subunit [Vibrio angustum
           S14]
 gi|89050940|gb|EAR56404.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium sp.
           SKA34]
 gi|90440111|gb|EAS65292.1| ATP-dependent Clp protease proteolytic subunit [Vibrio angustum
           S14]
          Length = 207

 Score =  281 bits (718), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 128/192 (66%), Positives = 159/192 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ AQLLFLE+ENP K+I 
Sbjct: 15  ALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIF 74

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+ G KG R+ LPN+R++
Sbjct: 75  LYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAKGKRYCLPNSRVM 134

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDI+ HAQ+I+ IK+RLN +  ++ G+  E VE+  DRD+ MSA +A 
Sbjct: 135 IHQPLGGFQGQASDIQIHAQEILTIKQRLNGLLAEHTGQPLEVVERDTDRDNFMSAEQAV 194

Query: 197 DWGVVDKVLMSR 208
           ++G+VD VL  R
Sbjct: 195 EYGLVDAVLSQR 206


>gi|254460423|ref|ZP_05073839.1| Clp protease [Rhodobacterales bacterium HTCC2083]
 gi|206677012|gb|EDZ41499.1| Clp protease [Rhodobacteraceae bacterium HTCC2083]
          Length = 210

 Score =  281 bits (718), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 127/201 (63%), Positives = 169/201 (84%), Gaps = 1/201 (0%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
            D  D ++  LVPMVVEQT+RGER+YDI+SRLLKERI+F+ G + D M++LI AQLL LE
Sbjct: 2   NDPIDTYMNTLVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMSSLIVAQLLHLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AENP KEIS+YINSPGGVVT+G++IYDTMQ+I+P +ST  +GQAASMGSLLL+AGEK MR
Sbjct: 62  AENPSKEISMYINSPGGVVTSGLSIYDTMQYIRPKVSTLVIGQAASMGSLLLTAGEKDMR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           F+LPN+R+++HQPSGG+ GQA+DI  HAQ+  K+K RLNEIYV++ G+T ++VE  L+RD
Sbjct: 122 FSLPNSRVMVHQPSGGYQGQATDIMIHAQETQKLKTRLNEIYVQHTGQTLKKVEAALERD 181

Query: 188 HIMSASEACDWGVVDKVLMSR 208
           + MS  EA ++G++D++L +R
Sbjct: 182 NFMSPEEAKEFGLIDEILQTR 202


>gi|118594831|ref|ZP_01552178.1| Peptidase S14, ClpP [Methylophilales bacterium HTCC2181]
 gi|118440609|gb|EAV47236.1| Peptidase S14, ClpP [Methylophilales bacterium HTCC2181]
          Length = 209

 Score =  281 bits (718), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 127/197 (64%), Positives = 164/197 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG +PMVVEQ+ RGERSYDIYSRLLKER+VF+ G ++D  A ++ AQLLFLEAENP K+I
Sbjct: 13  LGYIPMVVEQSGRGERSYDIYSRLLKERVVFLVGPVDDMTANVVVAQLLFLEAENPDKDI 72

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG VTAGMAIYDTMQFIKP IST C+GQAASMG+LLL+AG    RF+LPN+R+
Sbjct: 73  SLYINSPGGSVTAGMAIYDTMQFIKPDISTLCIGQAASMGALLLTAGAAKKRFSLPNSRV 132

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQASDIE HA++I+ +K +LN+I  ++ G++ E+V K  DRD+ MSA +A
Sbjct: 133 MIHQPLGGFQGQASDIEIHAKEILYLKEKLNKIMAEHSGQSLEKVSKDTDRDNFMSAKDA 192

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G++DKV+ SR D++
Sbjct: 193 MEYGLIDKVISSRSDVK 209


>gi|56478265|ref|YP_159854.1| ATP-dependent Clp protease proteolytic subunit [Aromatoleum
           aromaticum EbN1]
 gi|67460188|sp|Q5P161|CLPP_AZOSE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|56314308|emb|CAI08953.1| ATP-dependent Clp protease proteolytic subunit [Aromatoleum
           aromaticum EbN1]
          Length = 212

 Score =  281 bits (718), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 128/199 (64%), Positives = 163/199 (81%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           + V LGLVPMVVEQ+ RGER+YDIYSRLLKER++F+ G + D  A LI AQLLFLE+ENP
Sbjct: 13  DPVGLGLVPMVVEQSGRGERAYDIYSRLLKERVIFLVGPVNDVTANLIVAQLLFLESENP 72

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K++  YINSPGG V++GMAIYDTMQFIKP +ST C+GQAASMGS LL+AGEKG RF LP
Sbjct: 73  DKDVYFYINSPGGSVSSGMAIYDTMQFIKPSVSTLCIGQAASMGSFLLAAGEKGKRFCLP 132

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+R+++HQP GGF GQASDIE HA++I+ I+ +LNE+  K+ G+  E++EK  DRD  MS
Sbjct: 133 NSRVMIHQPLGGFQGQASDIEIHAREILGIRAKLNEMLAKHTGQPIEQIEKDTDRDRFMS 192

Query: 192 ASEACDWGVVDKVLMSRID 210
           A++A ++G+VDKVL +R D
Sbjct: 193 AADAVEYGIVDKVLTNRAD 211


>gi|254476195|ref|ZP_05089581.1| Clp protease [Ruegeria sp. R11]
 gi|214030438|gb|EEB71273.1| Clp protease [Ruegeria sp. R11]
          Length = 202

 Score =  280 bits (717), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 124/191 (64%), Positives = 165/191 (86%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQT+RGER+YDI+SRLLKERI+F+ G + D M++LI AQLL LEAENP KEIS+
Sbjct: 4   LVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMSSLIVAQLLHLEAENPSKEISM 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G++IYDTMQ+IKP +ST  +GQAASMGSLLL+AGE GMRF+LPN+R+++
Sbjct: 64  YINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLTAGEPGMRFSLPNSRVMV 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGGF GQA+DI  HA++ +K+K+RLNEIYVK+ G+ Y+ +   L+RD+ MS  EA +
Sbjct: 124 HQPSGGFQGQATDIMIHAEETLKLKKRLNEIYVKHTGQDYDSIVNALERDNFMSPEEAKE 183

Query: 198 WGVVDKVLMSR 208
           +G++D+++ +R
Sbjct: 184 FGLIDEIVENR 194


>gi|241116836|ref|XP_002401631.1| ATP-dependent Clp protease, proteolytic subunit, putative [Ixodes
           scapularis]
 gi|215493175|gb|EEC02816.1| ATP-dependent Clp protease, proteolytic subunit, putative [Ixodes
           scapularis]
          Length = 205

 Score =  280 bits (717), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 123/197 (62%), Positives = 164/197 (83%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E + +  VP+V+EQT+RGER+YDIYSRLLKERI+FV   +EDHM  LI AQLLFLEAENP
Sbjct: 1   EKILMSYVPIVIEQTSRGERAYDIYSRLLKERIIFVCSTVEDHMTNLIVAQLLFLEAENP 60

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+I +YINSPGGV+TAG+AIYDTMQ+IKP ++T C+GQA SMGSLLL  GEKGMR++LP
Sbjct: 61  KKDIYMYINSPGGVITAGLAIYDTMQYIKPKVATLCIGQACSMGSLLLCGGEKGMRYSLP 120

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           ++RI++HQPSGG+ GQA+DIE HAQ+ +KIKR LNE+Y K+  +  + +EK+++RD+ MS
Sbjct: 121 HSRIMIHQPSGGYKGQATDIEIHAQETLKIKRLLNELYSKHTRQELKHIEKSMERDNFMS 180

Query: 192 ASEACDWGVVDKVLMSR 208
             EA  +G++D ++ SR
Sbjct: 181 PEEAKKFGIIDNIISSR 197


>gi|90410782|ref|ZP_01218797.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium
           profundum 3TCK]
 gi|90328413|gb|EAS44711.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium
           profundum 3TCK]
          Length = 207

 Score =  280 bits (717), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 128/192 (66%), Positives = 158/192 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ AQLLFLE+ENP K+I 
Sbjct: 15  ALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIF 74

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+ G KG R+ LPN+R++
Sbjct: 75  LYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAKGKRYCLPNSRVM 134

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDI+ HAQ+I+ IK+RLN +  ++ G+  E VE   DRD+ MSA +A 
Sbjct: 135 IHQPLGGFQGQASDIQIHAQEILTIKQRLNNLLAEHTGQPLEIVEGDTDRDNFMSADQAV 194

Query: 197 DWGVVDKVLMSR 208
           ++G+VD VL  R
Sbjct: 195 EYGLVDSVLTQR 206


>gi|332172903|gb|AEE22157.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 212

 Score =  280 bits (717), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 126/194 (64%), Positives = 159/194 (81%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQT +GERSYDIYSRLLKE ++F+ GQ+EDHMA LI AQ+LFLEAENP+K+I 
Sbjct: 11  ALVPMVVEQTAKGERSYDIYSRLLKENVIFMVGQVEDHMANLIVAQMLFLEAENPEKDIF 70

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGMAIYDTM FIKP +ST C+GQAASMG+ LLS G KG R+ LPNAR++
Sbjct: 71  LYINSPGGSVTAGMAIYDTMNFIKPDVSTVCIGQAASMGAFLLSGGTKGKRYCLPNARVM 130

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASD E HA++I+ IK ++N +  ++ G+ YE+V +  DRD+ +SA E+ 
Sbjct: 131 IHQPLGGFQGQASDFEIHAKEILSIKEKMNRLMAEHTGQDYEKVARDTDRDNFLSAQESV 190

Query: 197 DWGVVDKVLMSRID 210
           D+G+VD+VL +R D
Sbjct: 191 DYGLVDQVLANRPD 204


>gi|60389653|sp|Q6LNW0|CLPP_PHOPR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
          Length = 199

 Score =  280 bits (717), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 128/192 (66%), Positives = 157/192 (81%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ AQLLFLE+ENP K+I 
Sbjct: 7   ALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIF 66

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+ G KG R+ LPN+R++
Sbjct: 67  LYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAKGKRYCLPNSRVM 126

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDI+ HA++I+ IK RLN +  K+ G+  E VE   DRD+ MSA +A 
Sbjct: 127 IHQPLGGFQGQASDIQIHAKEILTIKHRLNSLLAKHTGQPLEVVEGDTDRDNFMSADQAV 186

Query: 197 DWGVVDKVLMSR 208
           ++G+VD VL  R
Sbjct: 187 EYGLVDSVLTQR 198


>gi|54309798|ref|YP_130818.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium
           profundum SS9]
 gi|46914236|emb|CAG21016.1| putative gi|27363512|ref|NP_759040.1| ATP-dependent Clp protease,
           proteolytic subunit [Vibrio vulnificus CMCP6]
           [Photobacterium profundum SS9]
          Length = 207

 Score =  280 bits (716), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 128/192 (66%), Positives = 157/192 (81%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ AQLLFLE+ENP K+I 
Sbjct: 15  ALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIF 74

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+ G KG R+ LPN+R++
Sbjct: 75  LYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAKGKRYCLPNSRVM 134

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDI+ HA++I+ IK RLN +  K+ G+  E VE   DRD+ MSA +A 
Sbjct: 135 IHQPLGGFQGQASDIQIHAKEILTIKHRLNSLLAKHTGQPLEVVEGDTDRDNFMSADQAV 194

Query: 197 DWGVVDKVLMSR 208
           ++G+VD VL  R
Sbjct: 195 EYGLVDSVLTQR 206


>gi|15892669|ref|NP_360383.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia conorii
           str. Malish 7]
 gi|15619841|gb|AAL03284.1| ATP-dependent clp protease proteolytic subunit [Rickettsia conorii
           str. Malish 7]
          Length = 216

 Score =  280 bits (716), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 125/197 (63%), Positives = 164/197 (83%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E + +  VP+V+E T+RGER+YDIYSRLLKERI+FV   +EDHMA LI AQLLFLEAENP
Sbjct: 12  EKILMSYVPIVIEPTSRGERAYDIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAENP 71

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+I +YINSPGGVVTAG+AIYDTMQ+IKP ++T C+GQA SMGSLLL  GEKGMR++LP
Sbjct: 72  KKDIYMYINSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSLLLCGGEKGMRYSLP 131

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           ++RI++HQPSGG+ GQA+DIE HAQ+ +KIKR LNE+Y K+  +  + +EK+++RD+ MS
Sbjct: 132 HSRIMIHQPSGGYKGQATDIEIHAQETLKIKRLLNELYSKHTEQELKHIEKSMERDNFMS 191

Query: 192 ASEACDWGVVDKVLMSR 208
             EA  +G+VD ++ SR
Sbjct: 192 PEEAKKFGLVDNIMSSR 208


>gi|165933331|ref|YP_001650120.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
           rickettsii str. Iowa]
 gi|165908418|gb|ABY72714.1| ATP-dependent endopeptidase clp proteolytic subunit [Rickettsia
           rickettsii str. Iowa]
          Length = 216

 Score =  280 bits (716), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 125/197 (63%), Positives = 164/197 (83%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E + +  VP+V+E T+RGER+YDIYSRLLKERI+FV   +EDHMA LI AQLLFLEAENP
Sbjct: 12  EKILMSYVPIVIEPTSRGERAYDIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAENP 71

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+I +YINSPGGVVTAG+AIYDTMQ+IKP ++T C+GQA SMGSLLL  GEKGMR++LP
Sbjct: 72  KKDIYMYINSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSLLLCGGEKGMRYSLP 131

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           ++RI++HQPSGG+ GQA+DIE HAQ+ +KIKR LNE+Y K+  +  + +EK+++RD+ MS
Sbjct: 132 HSRIMIHQPSGGYKGQATDIEIHAQETLKIKRLLNELYSKHTEQELQHIEKSMERDNFMS 191

Query: 192 ASEACDWGVVDKVLMSR 208
             EA  +G+VD ++ SR
Sbjct: 192 PEEAKKFGLVDNIISSR 208


>gi|269102129|ref|ZP_06154826.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268162027|gb|EEZ40523.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 207

 Score =  280 bits (716), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 126/192 (65%), Positives = 159/192 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ AQLLFLE+ENP K+I 
Sbjct: 15  ALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIY 74

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+ G KG R+ LPN+R++
Sbjct: 75  LYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAKGKRYCLPNSRVM 134

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDI+ HAQ+I+ IK++LN +  ++ G+  E +E+  DRD+ MSA +A 
Sbjct: 135 IHQPLGGFQGQASDIQIHAQEILTIKQKLNNLLAEHTGQPLEVIERDTDRDNFMSADQAV 194

Query: 197 DWGVVDKVLMSR 208
           ++G+VD VL  R
Sbjct: 195 EYGLVDAVLSHR 206


>gi|110680063|ref|YP_683070.1| ATP-dependent Clp protease proteolytic subunit [Roseobacter
           denitrificans OCh 114]
 gi|116243162|sp|Q165F9|CLPP_ROSDO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|109456179|gb|ABG32384.1| Clp protease, putative [Roseobacter denitrificans OCh 114]
          Length = 208

 Score =  280 bits (716), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 126/200 (63%), Positives = 168/200 (84%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           KD  + ++ LVPMVVEQT+RGER+YDI+SRLLKERI+F+ G + D M++LI AQLL LEA
Sbjct: 2   KDPIETYMNLVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMSSLIVAQLLHLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP KEIS+YINSPGGVVT+G++IYDTMQ+IKP +ST  +GQAASMGSLLL+AGE GMRF
Sbjct: 62  ENPAKEISMYINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLTAGEAGMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPN+R+++HQPSGG+ GQA+DI  HA +  K+K RLNEIYVK+ G+T ++V   L+RD+
Sbjct: 122 SLPNSRVMVHQPSGGYQGQATDIMIHAAETQKLKDRLNEIYVKHTGQTMKKVVDALERDN 181

Query: 189 IMSASEACDWGVVDKVLMSR 208
            MS  EA ++G++D+++ +R
Sbjct: 182 FMSPEEAKEFGLIDEIVENR 201


>gi|330446593|ref|ZP_08310245.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490784|dbj|GAA04742.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 207

 Score =  280 bits (715), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 127/192 (66%), Positives = 159/192 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ AQLLFLE+ENP K+I 
Sbjct: 15  ALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIF 74

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+ G KG R+ LPN+R++
Sbjct: 75  LYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAKGKRYCLPNSRVM 134

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDI+ HAQ+I+ IK+RLN +  ++ G+  E +E+  DRD+ MSA +A 
Sbjct: 135 IHQPLGGFQGQASDIQIHAQEILTIKQRLNGLLAEHTGQPLEIIERDTDRDNFMSADQAV 194

Query: 197 DWGVVDKVLMSR 208
           ++G+VD VL  R
Sbjct: 195 EYGLVDAVLSKR 206


>gi|116243161|sp|Q1RJH2|CLPP_RICBR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
          Length = 227

 Score =  280 bits (715), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 125/197 (63%), Positives = 164/197 (83%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E   +  VP+V+EQT+RGER+YDIYSRLLKERI+FV G IEDHMA LI AQLLFLEAENP
Sbjct: 19  EKYPMSYVPIVIEQTSRGERAYDIYSRLLKERIIFVCGPIEDHMANLITAQLLFLEAENP 78

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+I +YINSPGGVVTAG+AIYDTMQ+IKP ++T C+GQA SMGS LL  GEKGMR++LP
Sbjct: 79  EKDIYMYINSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSFLLCGGEKGMRYSLP 138

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           ++R+++HQPSGG+ GQA+DIE HAQ+ +KIK+ LN +Y K+ G+  + VEK+++RD+ MS
Sbjct: 139 HSRVMIHQPSGGYRGQATDIEIHAQETLKIKKILNSLYSKHTGQDVKHVEKSMERDNFMS 198

Query: 192 ASEACDWGVVDKVLMSR 208
             EA  +G++DK++  R
Sbjct: 199 PEEAKKFGIIDKIITHR 215


>gi|261210563|ref|ZP_05924856.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. RC341]
 gi|262404275|ref|ZP_06080830.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. RC586]
 gi|260840348|gb|EEX66919.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. RC341]
 gi|262349307|gb|EEY98445.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. RC586]
          Length = 208

 Score =  280 bits (715), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 126/195 (64%), Positives = 159/195 (81%)

Query: 14  VFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQK 73
           +F  LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ AQLLFLE+ENP K
Sbjct: 12  IFDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDK 71

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+ G  G R+ LPN+
Sbjct: 72  DIFLYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNS 131

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           R+++HQP GGF GQASDI+ HAQ+I+ IK +LN +  ++ G+  E +E+  DRD+ MSA 
Sbjct: 132 RVMIHQPLGGFQGQASDIQIHAQEILTIKNKLNRLLAEHTGQPLEVIERDTDRDNFMSAD 191

Query: 194 EACDWGVVDKVLMSR 208
           +A ++G+VD VL  R
Sbjct: 192 QAVEYGLVDAVLKHR 206


>gi|71083579|ref|YP_266298.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Pelagibacter ubique HTCC1062]
 gi|91762000|ref|ZP_01263965.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Pelagibacter ubique HTCC1002]
 gi|115311789|sp|Q4FM94|CLPP_PELUB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|71062692|gb|AAZ21695.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Pelagibacter ubique HTCC1062]
 gi|91717802|gb|EAS84452.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Pelagibacter ubique HTCC1002]
          Length = 203

 Score =  279 bits (714), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 122/191 (63%), Positives = 167/191 (87%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQ+N+GER+YDIYSRLLKERI+F+ G I D++A+L+ AQLLFLE+E+P+KEI+L
Sbjct: 12  LVPMVVEQSNKGERAYDIYSRLLKERIIFLVGPINDNVASLVTAQLLFLESEDPKKEINL 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG+VTAG+ IYDTMQ+IKP +ST C+GQAASMGS LL+AG+KG RF+LPN+RI++
Sbjct: 72  YINSPGGLVTAGLGIYDTMQYIKPDVSTLCIGQAASMGSFLLAAGKKGKRFSLPNSRIMV 131

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPS GF GQA+DIE HA +++ +K+RLNEIY K+ GK+ ++V+K L+RD+ M+   A +
Sbjct: 132 HQPSAGFQGQATDIEIHANEVLALKKRLNEIYSKHTGKSVDDVKKALERDNFMTPDTAKE 191

Query: 198 WGVVDKVLMSR 208
           +G++D+V+ +R
Sbjct: 192 FGLIDEVVENR 202


>gi|91205226|ref|YP_537581.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia bellii
           RML369-C]
 gi|157827437|ref|YP_001496501.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia bellii
           OSU 85-389]
 gi|91068770|gb|ABE04492.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia bellii
           RML369-C]
 gi|157802741|gb|ABV79464.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia bellii
           OSU 85-389]
          Length = 264

 Score =  279 bits (714), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 124/193 (64%), Positives = 163/193 (84%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP+V+EQT+RGER+YDIYSRLLKERI+FV G IEDHMA LI AQLLFLEAENP+K+I
Sbjct: 60  MSYVPIVIEQTSRGERAYDIYSRLLKERIIFVCGPIEDHMANLITAQLLFLEAENPEKDI 119

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG+AIYDTMQ+IKP ++T C+GQA SMGS LL  GEKGMR++LP++R+
Sbjct: 120 YMYINSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSFLLCGGEKGMRYSLPHSRV 179

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG+ GQA+DIE HAQ+ +KIK+ LN +Y K+ G+  + VEK+++RD+ MS  EA
Sbjct: 180 MIHQPSGGYRGQATDIEIHAQETLKIKKILNSLYSKHTGQDVKHVEKSMERDNFMSPEEA 239

Query: 196 CDWGVVDKVLMSR 208
             +G++DK++  R
Sbjct: 240 KKFGIIDKIITHR 252


>gi|153839648|ref|ZP_01992315.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           parahaemolyticus AQ3810]
 gi|260902813|ref|ZP_05911208.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           parahaemolyticus AQ4037]
 gi|149746838|gb|EDM57826.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           parahaemolyticus AQ3810]
 gi|308108649|gb|EFO46189.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           parahaemolyticus AQ4037]
 gi|328473326|gb|EGF44174.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
           parahaemolyticus 10329]
          Length = 208

 Score =  279 bits (714), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 125/192 (65%), Positives = 158/192 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ AQLLFLE+ENP K+I 
Sbjct: 15  ALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIF 74

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+ G  G R+ LPN+R++
Sbjct: 75  LYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAAGKRYVLPNSRVM 134

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDI+ HAQ+I+ IK++LN +  ++ G+  E +E+  DRD+ MSA +A 
Sbjct: 135 IHQPLGGFQGQASDIQIHAQEILTIKQKLNNLLAEHTGQPLEVIERDTDRDNFMSAEQAV 194

Query: 197 DWGVVDKVLMSR 208
           ++G+VD VL  R
Sbjct: 195 EYGIVDAVLSHR 206


>gi|86137328|ref|ZP_01055905.1| Protease subunit of ATP-dependent Clp protease [Roseobacter sp.
           MED193]
 gi|85825663|gb|EAQ45861.1| Protease subunit of ATP-dependent Clp protease [Roseobacter sp.
           MED193]
          Length = 202

 Score =  279 bits (714), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 125/191 (65%), Positives = 164/191 (85%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQT+RGER+YDI+SRLLKERI+F+ G + D M++LI AQLL LEAENP KEIS+
Sbjct: 4   LVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMSSLIVAQLLHLEAENPSKEISM 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G++IYDTMQ+IKP +ST  +GQAASMGSLLL+AGE GMRF+LPN+R+++
Sbjct: 64  YINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLTAGEAGMRFSLPNSRVMV 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGGF GQA+DI  HA++ +K+KRRLNEIYVK+ G+  ++VE  L+RD+ M   EA  
Sbjct: 124 HQPSGGFQGQATDIMIHAEETLKLKRRLNEIYVKHTGQELDKVEAALERDNFMDPEEAKA 183

Query: 198 WGVVDKVLMSR 208
           +G++D+++ +R
Sbjct: 184 FGLIDEIVENR 194


>gi|121727845|ref|ZP_01680912.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           cholerae V52]
 gi|229507982|ref|ZP_04397487.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae BX
           330286]
 gi|229511781|ref|ZP_04401260.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
           B33]
 gi|229515308|ref|ZP_04404768.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae TMA
           21]
 gi|229518918|ref|ZP_04408361.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
           RC9]
 gi|229523942|ref|ZP_04413347.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae bv.
           albensis VL426]
 gi|229529052|ref|ZP_04418442.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
           12129(1)]
 gi|229607528|ref|YP_002878176.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
           MJ-1236]
 gi|254849010|ref|ZP_05238360.1| ATP-dependent Clp protease [Vibrio cholerae MO10]
 gi|255745319|ref|ZP_05419268.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholera CIRS
           101]
 gi|262156043|ref|ZP_06029163.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
           INDRE 91/1]
 gi|262167884|ref|ZP_06035584.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
           RC27]
 gi|297579440|ref|ZP_06941368.1| ATP-dependent Clp protease [Vibrio cholerae RC385]
 gi|298498040|ref|ZP_07007847.1| clp protease [Vibrio cholerae MAK 757]
 gi|121629881|gb|EAX62295.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           cholerae V52]
 gi|229332826|gb|EEN98312.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
           12129(1)]
 gi|229337523|gb|EEO02540.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae bv.
           albensis VL426]
 gi|229343607|gb|EEO08582.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
           RC9]
 gi|229348013|gb|EEO12972.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae TMA
           21]
 gi|229351746|gb|EEO16687.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
           B33]
 gi|229355487|gb|EEO20408.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae BX
           330286]
 gi|229370183|gb|ACQ60606.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
           MJ-1236]
 gi|254844715|gb|EET23129.1| ATP-dependent Clp protease [Vibrio cholerae MO10]
 gi|255737149|gb|EET92545.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholera CIRS
           101]
 gi|262023611|gb|EEY42312.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
           RC27]
 gi|262030221|gb|EEY48865.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
           INDRE 91/1]
 gi|297537034|gb|EFH75867.1| ATP-dependent Clp protease [Vibrio cholerae RC385]
 gi|297542373|gb|EFH78423.1| clp protease [Vibrio cholerae MAK 757]
 gi|327484465|gb|AEA78872.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
           LMA3894-4]
          Length = 208

 Score =  279 bits (714), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 126/195 (64%), Positives = 159/195 (81%)

Query: 14  VFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQK 73
           +F  LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ AQLLFLE+ENP K
Sbjct: 12  IFDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDK 71

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+ G  G R+ LPN+
Sbjct: 72  DIFLYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNS 131

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           R+++HQP GGF GQASDI+ HAQ+I+ IK +LN +  ++ G+  E +E+  DRD+ MSA 
Sbjct: 132 RVMIHQPLGGFQGQASDIQIHAQEILTIKNKLNRLLAEHTGQPIEVIERDTDRDNFMSAD 191

Query: 194 EACDWGVVDKVLMSR 208
           +A ++G+VD VL  R
Sbjct: 192 QAVEYGLVDAVLKHR 206


>gi|320540337|ref|ZP_08039989.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Serratia symbiotica str. Tucson]
 gi|320029657|gb|EFW11684.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Serratia symbiotica str. Tucson]
          Length = 207

 Score =  279 bits (713), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 128/208 (61%), Positives = 169/208 (81%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D     + LVPMVVEQT+RGERSYDIYSRLLKERI+F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--ERDQCAPNMALVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAE+P+K+I LYINSPGGV+TAGM+IYDTM+FIKP +ST CMGQA SMGS LL+
Sbjct: 59  AQMLFLEAESPEKDIFLYINSPGGVITAGMSIYDTMKFIKPDVSTICMGQACSMGSFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG K  RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+  ++ G++  ++
Sbjct: 119 AGAKSKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKARMNELMAEHTGQSLAQI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E   +RD  M+A EA ++G+VD +L  R
Sbjct: 179 ECDTERDRFMTADEAVEYGLVDGILTHR 206


>gi|109899441|ref|YP_662696.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Pseudoalteromonas atlantica T6c]
 gi|123064308|sp|Q15R46|CLPP_PSEA6 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|109701722|gb|ABG41642.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Pseudoalteromonas atlantica T6c]
          Length = 212

 Score =  279 bits (713), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 125/194 (64%), Positives = 158/194 (81%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQT +GERSYDIYSRLLKE ++F+ GQ+EDHMA LI AQ+LFLEAENP+K+I 
Sbjct: 11  ALVPMVVEQTAKGERSYDIYSRLLKENVIFMVGQVEDHMANLIVAQMLFLEAENPEKDIF 70

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGMAIYDTM FIKP +ST C+GQAASMG+ LLS G KG R+ LPNAR++
Sbjct: 71  LYINSPGGSVTAGMAIYDTMNFIKPDVSTVCIGQAASMGAFLLSGGAKGKRYCLPNARVM 130

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASD E HA++I+ IK ++N +   + G+ Y++V +  DRD+ +SA E+ 
Sbjct: 131 IHQPLGGFQGQASDFEIHAKEILSIKEKMNRLMAAHTGQDYDKVARDTDRDNFLSAQESV 190

Query: 197 DWGVVDKVLMSRID 210
           D+G+VD+VL +R D
Sbjct: 191 DYGLVDQVLANRPD 204


>gi|28897691|ref|NP_797296.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|260898290|ref|ZP_05906786.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           parahaemolyticus Peru-466]
 gi|308094762|ref|ZP_05891792.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           parahaemolyticus AN-5034]
 gi|31340006|sp|Q87R80|CLPP_VIBPA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|28805904|dbj|BAC59180.1| ATP-dependent Clp protease, proteolytic subunit [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|308088425|gb|EFO38120.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           parahaemolyticus Peru-466]
 gi|308093191|gb|EFO42886.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           parahaemolyticus AN-5034]
          Length = 200

 Score =  279 bits (713), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 125/192 (65%), Positives = 158/192 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ AQLLFLE+ENP K+I 
Sbjct: 7   ALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIF 66

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+ G  G R+ LPN+R++
Sbjct: 67  LYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAAGKRYVLPNSRVM 126

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDI+ HAQ+I+ IK++LN +  ++ G+  E +E+  DRD+ MSA +A 
Sbjct: 127 IHQPLGGFQGQASDIQIHAQEILTIKQKLNNLLAEHTGQPLEVIERDTDRDNFMSAEQAV 186

Query: 197 DWGVVDKVLMSR 208
           ++G+VD VL  R
Sbjct: 187 EYGIVDAVLSHR 198


>gi|262276278|ref|ZP_06054087.1| ATP-dependent Clp protease proteolytic subunit [Grimontia hollisae
           CIP 101886]
 gi|262220086|gb|EEY71402.1| ATP-dependent Clp protease proteolytic subunit [Grimontia hollisae
           CIP 101886]
          Length = 207

 Score =  278 bits (712), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 129/208 (62%), Positives = 164/208 (78%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MSF+   K     +   LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ 
Sbjct: 1   MSFQ--EKNGMPSIMDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE+ENP K+I LYINSPGG VTAGM+IYDTMQ+IKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQYIKPDVSTVCMGQACSMGAFLLA 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
            G KG R+ LPN+R+++HQP GGF GQASDI+ HAQ+I+ IK RLN +  ++ G+  E +
Sbjct: 119 GGAKGKRYCLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKHRLNTLLAEHTGQPLEVI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  DRD+ M+A +A ++G+VD VL  R
Sbjct: 179 ERDTDRDNFMAAQDAVNYGLVDAVLNKR 206


>gi|260432980|ref|ZP_05786951.1| Clp protease [Silicibacter lacuscaerulensis ITI-1157]
 gi|260416808|gb|EEX10067.1| Clp protease [Silicibacter lacuscaerulensis ITI-1157]
          Length = 210

 Score =  278 bits (712), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 132/204 (64%), Positives = 165/204 (80%), Gaps = 1/204 (0%)

Query: 10  DSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           D  D ++  LVPMVVEQT+RGER+YDI+SRLLKERIVF+ G I D M+ LI AQLL LEA
Sbjct: 3   DPVDTYMNTLVPMVVEQTSRGERAYDIFSRLLKERIVFINGPIHDGMSHLIVAQLLHLEA 62

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEIS+YINSPGGVVT+G+AIYDTMQ+IKP  ST  +GQAASMGS+LL+ GEKGMRF
Sbjct: 63  ENPKKEISIYINSPGGVVTSGLAIYDTMQYIKPKCSTLVIGQAASMGSVLLAGGEKGMRF 122

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           ALPN+RI++HQPSGG+ GQASDI  HA +  K+K RL +IY K+ G++ + +EK LDRD+
Sbjct: 123 ALPNSRIMVHQPSGGYQGQASDIMIHAAETQKLKDRLYDIYAKHTGQSKKTIEKALDRDN 182

Query: 189 IMSASEACDWGVVDKVLMSRIDIE 212
            MS  EA +WG +D+++ SR   E
Sbjct: 183 FMSPEEAKEWGHIDEIVESRTKAE 206


>gi|242279532|ref|YP_002991661.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
           salexigens DSM 2638]
 gi|242122426|gb|ACS80122.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
           salexigens DSM 2638]
          Length = 202

 Score =  278 bits (712), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 123/198 (62%), Positives = 167/198 (84%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G +P+VVE T R ER+YDIYSRLLK+RI+ ++G++ DH+A++ICAQLLFLE+E+P+KEI 
Sbjct: 3   GTIPIVVETTGRTERAYDIYSRLLKDRIILLSGEVNDHVASVICAQLLFLESEDPEKEIY 62

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGGVVTAGMAIYDTMQ+I  P++T CMGQAASMG+ LLSAGEKG R++LP++RIL
Sbjct: 63  MYINSPGGVVTAGMAIYDTMQYISAPVATLCMGQAASMGAFLLSAGEKGQRYSLPHSRIL 122

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA+DI+  A++I+++++ LN I  +N G+T EE+EK  DRD+ MSA EA 
Sbjct: 123 IHQPLGGAQGQATDIDIQAREILRLRKSLNSIMAENTGRTVEEIEKDTDRDNFMSAQEAV 182

Query: 197 DWGVVDKVLMSRIDIEEK 214
           ++G++DKVL +R +IE K
Sbjct: 183 EYGLIDKVLENRGNIESK 200


>gi|15641924|ref|NP_231556.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|147674197|ref|YP_001217455.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
           O395]
 gi|153824129|ref|ZP_01976796.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           cholerae B33]
 gi|153826398|ref|ZP_01979065.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           cholerae MZO-2]
 gi|227082052|ref|YP_002810603.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           cholerae M66-2]
 gi|254286858|ref|ZP_04961810.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           cholerae AM-19226]
 gi|18203199|sp|Q9KQS6|CLPP_VIBCH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|172047646|sp|A5F6X0|CLPP_VIBC3 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|254763808|sp|C3LNM6|CLPP_VIBCM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|9656458|gb|AAF95070.1| ATP-dependent Clp protease, proteolytic subunit [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|126518348|gb|EAZ75571.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           cholerae B33]
 gi|146316080|gb|ABQ20619.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           cholerae O395]
 gi|149739876|gb|EDM54067.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           cholerae MZO-2]
 gi|150423008|gb|EDN14957.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           cholerae AM-19226]
 gi|227009940|gb|ACP06152.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           cholerae M66-2]
 gi|227013820|gb|ACP10030.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           cholerae O395]
          Length = 200

 Score =  278 bits (712), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 126/195 (64%), Positives = 159/195 (81%)

Query: 14  VFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQK 73
           +F  LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ AQLLFLE+ENP K
Sbjct: 4   IFDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDK 63

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+ G  G R+ LPN+
Sbjct: 64  DIFLYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNS 123

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           R+++HQP GGF GQASDI+ HAQ+I+ IK +LN +  ++ G+  E +E+  DRD+ MSA 
Sbjct: 124 RVMIHQPLGGFQGQASDIQIHAQEILTIKNKLNRLLAEHTGQPIEVIERDTDRDNFMSAD 183

Query: 194 EACDWGVVDKVLMSR 208
           +A ++G+VD VL  R
Sbjct: 184 QAVEYGLVDAVLKHR 198


>gi|153835695|ref|ZP_01988362.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           harveyi HY01]
 gi|156973712|ref|YP_001444619.1| ATP-dependent Clp protease proteolytic subunit [Vibrio harveyi ATCC
           BAA-1116]
 gi|269961045|ref|ZP_06175414.1| ATP-dependent Clp protease proteolytic subunit [Vibrio harveyi
           1DA3]
 gi|226706635|sp|A7MV87|CLPP_VIBHB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|148867676|gb|EDL66952.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           harveyi HY01]
 gi|156525306|gb|ABU70392.1| hypothetical protein VIBHAR_01417 [Vibrio harveyi ATCC BAA-1116]
 gi|269834264|gb|EEZ88354.1| ATP-dependent Clp protease proteolytic subunit [Vibrio harveyi
           1DA3]
          Length = 208

 Score =  278 bits (712), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 125/192 (65%), Positives = 158/192 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ AQLLFLE+ENP K+I 
Sbjct: 15  ALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIF 74

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+ G  G R+ LPN+R++
Sbjct: 75  LYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVM 134

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDI+ HAQ+I+ IK++LN +  ++ G+  E +E+  DRD+ MSA +A 
Sbjct: 135 IHQPLGGFQGQASDIQIHAQEILTIKQKLNNLLAEHTGQPLEVIERDTDRDNFMSADQAV 194

Query: 197 DWGVVDKVLMSR 208
           ++G+VD VL  R
Sbjct: 195 EYGIVDAVLSHR 206


>gi|27363512|ref|NP_759040.1| ATP-dependent Clp protease proteolytic subunit [Vibrio vulnificus
           CMCP6]
 gi|37679288|ref|NP_933897.1| ATP-dependent Clp protease proteolytic subunit [Vibrio vulnificus
           YJ016]
 gi|320156969|ref|YP_004189348.1| ATP-dependent Clp protease proteolytic subunit [Vibrio vulnificus
           MO6-24/O]
 gi|27359628|gb|AAO08567.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           vulnificus CMCP6]
 gi|37198031|dbj|BAC93868.1| ATP-dependent Clp protease, proteolytic subunit [Vibrio vulnificus
           YJ016]
 gi|319932281|gb|ADV87145.1| ATP-dependent Clp protease proteolytic subunit [Vibrio vulnificus
           MO6-24/O]
          Length = 208

 Score =  278 bits (712), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 125/192 (65%), Positives = 158/192 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ AQLLFLE+ENP K+I 
Sbjct: 15  ALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIF 74

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+ G  G R+ LPN+R++
Sbjct: 75  LYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVM 134

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDI+ HAQ+I+ IK +LN++  ++ G+  E +E+  DRD+ MSA +A 
Sbjct: 135 IHQPLGGFQGQASDIQIHAQEILTIKTKLNKLLAEHTGQPLEVIERDTDRDNFMSADQAV 194

Query: 197 DWGVVDKVLMSR 208
           ++G+VD VL  R
Sbjct: 195 EYGLVDAVLTHR 206


>gi|84387735|ref|ZP_00990751.1| ATP-dependent Clp protease proteolytic subunit [Vibrio splendidus
           12B01]
 gi|218710174|ref|YP_002417795.1| ATP-dependent Clp protease proteolytic subunit [Vibrio splendidus
           LGP32]
 gi|254763809|sp|B7VI00|CLPP_VIBSL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|84377418|gb|EAP94285.1| ATP-dependent Clp protease proteolytic subunit [Vibrio splendidus
           12B01]
 gi|218323193|emb|CAV19370.1| ATP-dependent Clp protease proteolytic subunit [Vibrio splendidus
           LGP32]
          Length = 208

 Score =  278 bits (712), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 130/208 (62%), Positives = 164/208 (78%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS++   K     +   LVPMVVEQT+RGERSYDIYSRLLKERI+F+TGQ+EDHMA L+ 
Sbjct: 1   MSYQ--EKNTMPSIMDALVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLVV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE+ENP K+I LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQLLFLESENPDKDIYLYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLA 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
            G  G R  LPN+R+++HQP GGF GQASDI+ HAQ+I+ IK++LN++  ++ G+  E V
Sbjct: 119 GGTPGKRHVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKQKLNKLLAEHTGQPLEVV 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  DRD+ MSA +A ++G+VD VL  R
Sbjct: 179 ERDTDRDNFMSADQAVEYGLVDSVLNHR 206


>gi|91793847|ref|YP_563498.1| ATP-dependent Clp protease proteolytic subunit [Shewanella
           denitrificans OS217]
 gi|123356647|sp|Q12LA1|CLPP_SHEDO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|91715849|gb|ABE55775.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella
           denitrificans OS217]
          Length = 203

 Score =  278 bits (711), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 128/200 (64%), Positives = 161/200 (80%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           K  E V   LVPMVVEQT +GERSYDIYSRLLKER++F+ GQ+E+HMA LI AQLLFLE+
Sbjct: 3   KAPESVLNALVPMVVEQTAKGERSYDIYSRLLKERVIFLVGQVEEHMANLIVAQLLFLES 62

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           E+P K+I LYINSPGG VTAGMAIYDTMQFIKP +ST C+GQAASMG+ LL+ G KG R 
Sbjct: 63  ESPDKDIYLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFLLAGGAKGKRH 122

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
            LPN+R+++HQP GGF GQASDI  HAQ+I+ IK +LN++  ++ G+  E +E+  DRD+
Sbjct: 123 CLPNSRVMIHQPLGGFQGQASDIAIHAQEILGIKNKLNQMLAEHTGQPLEVIERDTDRDN 182

Query: 189 IMSASEACDWGVVDKVLMSR 208
            MSA++A D+G+VD +L SR
Sbjct: 183 FMSATQAMDYGLVDSLLTSR 202


>gi|157825907|ref|YP_001493627.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia akari
           str. Hartford]
 gi|166214704|sp|A8GNZ4|CLPP_RICAH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|157799865|gb|ABV75119.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia akari
           str. Hartford]
          Length = 201

 Score =  278 bits (711), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 122/193 (63%), Positives = 163/193 (84%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP+V+EQT+RGER+YDIYSRLLKERI+FV   +EDHMA LI AQLLFLEAENP+K++
Sbjct: 1   MSYVPIVIEQTSRGERAYDIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAENPKKDV 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG+AIYDTMQ+IKP ++T C+GQA SMGSLLL  G +GMR++LP++RI
Sbjct: 61  YMYINSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSLLLCGGTQGMRYSLPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG+ GQA+DIE HAQ+ +KIKR LNE+Y K+ G+  + +EK+++RD+ MS  EA
Sbjct: 121 MIHQPSGGYKGQATDIEIHAQETLKIKRLLNELYSKHTGQELKHIEKSMERDNFMSPEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D ++ SR
Sbjct: 181 KKFGIIDNIISSR 193


>gi|31340017|sp|Q8DG26|CLPP_VIBVU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|60389705|sp|Q7MMG7|CLPP_VIBVY RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
          Length = 200

 Score =  278 bits (711), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 125/192 (65%), Positives = 158/192 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ AQLLFLE+ENP K+I 
Sbjct: 7   ALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIF 66

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+ G  G R+ LPN+R++
Sbjct: 67  LYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVM 126

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDI+ HAQ+I+ IK +LN++  ++ G+  E +E+  DRD+ MSA +A 
Sbjct: 127 IHQPLGGFQGQASDIQIHAQEILTIKTKLNKLLAEHTGQPLEVIERDTDRDNFMSADQAV 186

Query: 197 DWGVVDKVLMSR 208
           ++G+VD VL  R
Sbjct: 187 EYGLVDAVLTHR 198


>gi|258542726|ref|YP_003188159.1| ATP-dependent Clp protease proteolytic subunit [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256633804|dbj|BAH99779.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
           3283-01]
 gi|256636863|dbj|BAI02832.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
           3283-03]
 gi|256639916|dbj|BAI05878.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
           3283-07]
 gi|256642972|dbj|BAI08927.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646027|dbj|BAI11975.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649080|dbj|BAI15021.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652067|dbj|BAI18001.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655124|dbj|BAI21051.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
           3283-12]
          Length = 220

 Score =  278 bits (711), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 129/202 (63%), Positives = 169/202 (83%), Gaps = 1/202 (0%)

Query: 5   GCAKKDSEDVFL-GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQL 63
           G   +D  ++F   LVPMVVEQT+RGER++DIYSRLL+ERI+F+TG + D +A+LI AQL
Sbjct: 3   GMRDRDPVEIFSNALVPMVVEQTSRGERAFDIYSRLLQERIIFLTGPVYDQVASLISAQL 62

Query: 64  LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           L+LE+ NP KEIS YINSPGGVV+AG+AIYDTMQ+I+ P+ST C+GQAASMGSLLL+ GE
Sbjct: 63  LYLESVNPNKEISFYINSPGGVVSAGLAIYDTMQYIRSPVSTVCIGQAASMGSLLLAGGE 122

Query: 124 KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
           KG RFALPNAR+++HQPSGG  GQASDIE  A++I+ I+++LNEIY ++ G+T EE+E+ 
Sbjct: 123 KGRRFALPNARVMVHQPSGGAQGQASDIEIQAREILIIRQKLNEIYREHTGRTLEEIEQK 182

Query: 184 LDRDHIMSASEACDWGVVDKVL 205
           L+RD  MSA EA  +G+VD+V+
Sbjct: 183 LERDTYMSAQEAQSFGIVDEVI 204


>gi|330994049|ref|ZP_08317979.1| ATP-dependent Clp protease proteolytic subunit 1 [Gluconacetobacter
           sp. SXCC-1]
 gi|329758995|gb|EGG75509.1| ATP-dependent Clp protease proteolytic subunit 1 [Gluconacetobacter
           sp. SXCC-1]
          Length = 213

 Score =  278 bits (711), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 127/198 (64%), Positives = 167/198 (84%), Gaps = 1/198 (0%)

Query: 9   KDSEDVFL-GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           +D  ++F   LVPMVVEQT+RGER++DIYSRLL+ERI+F+TG + D +A ++ AQLL+LE
Sbjct: 6   RDPVEIFNNALVPMVVEQTSRGERAFDIYSRLLQERIIFLTGPVYDQVAAVVSAQLLYLE 65

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           + NP KEIS YINSPGGVV+AG+AIYDTMQ+I+ P+ST C+GQAASMGSLLL+ GEKG R
Sbjct: 66  SVNPTKEISFYINSPGGVVSAGLAIYDTMQYIRSPVSTVCIGQAASMGSLLLAGGEKGRR 125

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           FALPN+R+++HQPSGG  GQASDIE  AQ+I+ I++RLNEIY ++ G+T EE+E+ L+RD
Sbjct: 126 FALPNSRVMVHQPSGGAQGQASDIEIQAQEILTIRKRLNEIYNEHTGRTLEEIERKLERD 185

Query: 188 HIMSASEACDWGVVDKVL 205
             MSA EA  +G+VD+V+
Sbjct: 186 SYMSAEEAQAFGIVDEVV 203


>gi|302878843|ref|YP_003847407.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Gallionella
           capsiferriformans ES-2]
 gi|302581632|gb|ADL55643.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Gallionella
           capsiferriformans ES-2]
          Length = 202

 Score =  278 bits (711), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 122/194 (62%), Positives = 162/194 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +G++PMVVE + RGER+YDIYSRLLKER+VF+ G++ DH A LI AQ+LFLE+ENP K+I
Sbjct: 9   IGMIPMVVETSGRGERAYDIYSRLLKERVVFLVGEVNDHSANLIVAQMLFLESENPDKDI 68

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG VTAGMAIYDTMQFIKP +ST C+GQAASMG+ LL+AGEKG RFALPN+R+
Sbjct: 69  HFYINSPGGSVTAGMAIYDTMQFIKPAVSTLCIGQAASMGAFLLTAGEKGKRFALPNSRV 128

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQASDIE HA++I+ +K++LN++   + G+T E +E+  DRD+ +SA++A
Sbjct: 129 MIHQPLGGFRGQASDIEIHAREILYLKQKLNQMLADHTGQTVEAIERDTDRDNFLSAADA 188

Query: 196 CDWGVVDKVLMSRI 209
             +G+VD+VL  R+
Sbjct: 189 VAYGLVDQVLEKRV 202


>gi|86148885|ref|ZP_01067136.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. MED222]
 gi|85833328|gb|EAQ51535.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. MED222]
          Length = 198

 Score =  278 bits (710), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 127/191 (66%), Positives = 158/191 (82%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQT+RGERSYDIYSRLLKERI+F+TGQ+EDHMA L+ AQLLFLE+ENP K+I L
Sbjct: 6   LVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLVVAQLLFLESENPDKDIYL 65

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+ G  G R  LPN+R+++
Sbjct: 66  YINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGTPGKRHVLPNSRVMI 125

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQASDI+ HAQ+I+ IK++LN++  ++ G+  E VE+  DRD+ MSA +A +
Sbjct: 126 HQPLGGFQGQASDIQIHAQEILTIKQKLNKLLAEHTGQPLEVVERDTDRDNFMSADQAVE 185

Query: 198 WGVVDKVLMSR 208
           +G+VD VL  R
Sbjct: 186 YGLVDSVLNHR 196


>gi|56695904|ref|YP_166255.1| ATP-dependent Clp protease proteolytic subunit [Ruegeria pomeroyi
           DSS-3]
 gi|67460175|sp|Q5LUQ0|CLPP_SILPO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|56677641|gb|AAV94307.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ruegeria
           pomeroyi DSS-3]
          Length = 209

 Score =  278 bits (710), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 131/200 (65%), Positives = 164/200 (82%), Gaps = 1/200 (0%)

Query: 10  DSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           D  D ++  LVPMVVEQT+RGER+YDI+SRLLKERI+F+ G I D M+ LI AQLL LEA
Sbjct: 3   DPVDTYMNTLVPMVVEQTSRGERAYDIFSRLLKERIIFINGPIHDGMSHLIVAQLLHLEA 62

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP KEIS+YINSPGGVVT+G++IYDTMQ+IKP  ST  +GQAASMGS+LL+ GEKGMRF
Sbjct: 63  ENPNKEISIYINSPGGVVTSGLSIYDTMQYIKPKCSTLVIGQAASMGSVLLAGGEKGMRF 122

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPN+RI++HQPSGG+ GQASDI  HA +  K+K RL +IYVK+ G+T + VEK LDRD+
Sbjct: 123 SLPNSRIMVHQPSGGYQGQASDIMIHAAETQKLKDRLYDIYVKHTGQTKKAVEKALDRDN 182

Query: 189 IMSASEACDWGVVDKVLMSR 208
            MS  EA +WG +D+++ SR
Sbjct: 183 FMSPEEAKEWGHIDEIVESR 202


>gi|261253459|ref|ZP_05946032.1| ATP-dependent Clp protease proteolytic subunit [Vibrio orientalis
           CIP 102891]
 gi|260936850|gb|EEX92839.1| ATP-dependent Clp protease proteolytic subunit [Vibrio orientalis
           CIP 102891]
          Length = 208

 Score =  278 bits (710), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 124/192 (64%), Positives = 159/192 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ AQLLFLE+ENP K+I 
Sbjct: 15  ALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIF 74

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+ G  G R+ LPN+R++
Sbjct: 75  LYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVM 134

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDI+ HAQ+I+ IK++LN++  ++ G+  E +E+  DRD+ M+A +A 
Sbjct: 135 IHQPLGGFQGQASDIQIHAQEILTIKQKLNKLLAEHTGQPLEVIERDTDRDNFMAADQAV 194

Query: 197 DWGVVDKVLMSR 208
           ++G+VD VL  R
Sbjct: 195 EYGLVDAVLTHR 206


>gi|260776382|ref|ZP_05885277.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260607605|gb|EEX33870.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 208

 Score =  278 bits (710), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 124/192 (64%), Positives = 159/192 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ AQLLFLE+ENP K+I 
Sbjct: 15  ALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIF 74

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+ G  G R+ LPN+R++
Sbjct: 75  LYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVM 134

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDI+ HAQ+I+ IK++LN++  ++ G+  E +E+  DRD+ M+A +A 
Sbjct: 135 IHQPLGGFQGQASDIQIHAQEILTIKQKLNKLLAEHTGQPLEVIERDTDRDNFMAADQAV 194

Query: 197 DWGVVDKVLMSR 208
           ++G+VD VL  R
Sbjct: 195 EYGLVDAVLTHR 206


>gi|91228617|ref|ZP_01262535.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
           alginolyticus 12G01]
 gi|254229904|ref|ZP_04923307.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio sp.
           Ex25]
 gi|262394815|ref|YP_003286669.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. Ex25]
 gi|269965580|ref|ZP_06179694.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
           alginolyticus 40B]
 gi|91187849|gb|EAS74163.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
           alginolyticus 12G01]
 gi|151937540|gb|EDN56395.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio sp.
           Ex25]
 gi|262338409|gb|ACY52204.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. Ex25]
 gi|269829805|gb|EEZ84040.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
           alginolyticus 40B]
          Length = 208

 Score =  278 bits (710), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 124/192 (64%), Positives = 159/192 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ AQLLFLE+ENP K+I 
Sbjct: 15  ALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIF 74

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+ G  G R+ LPN+R++
Sbjct: 75  LYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVM 134

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDI+ HAQ+I+ IK++LN++  ++ G+  E +E+  DRD+ MS+ +A 
Sbjct: 135 IHQPLGGFQGQASDIQIHAQEILTIKQKLNKLLAEHTGQPLEVIERDTDRDNFMSSEQAV 194

Query: 197 DWGVVDKVLMSR 208
           ++G+VD VL  R
Sbjct: 195 EYGIVDAVLSHR 206


>gi|258621302|ref|ZP_05716336.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus
           VM573]
 gi|258625374|ref|ZP_05720271.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus
           VM603]
 gi|262166052|ref|ZP_06033789.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus
           VM223]
 gi|262171083|ref|ZP_06038761.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus
           MB-451]
 gi|258582365|gb|EEW07217.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus
           VM603]
 gi|258586690|gb|EEW11405.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus
           VM573]
 gi|261892159|gb|EEY38145.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus
           MB-451]
 gi|262025768|gb|EEY44436.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus
           VM223]
          Length = 208

 Score =  278 bits (710), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 125/195 (64%), Positives = 159/195 (81%)

Query: 14  VFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQK 73
           +F  LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ AQLLFLE+ENP K
Sbjct: 12  IFDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDK 71

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+ G  G R+ LPN+
Sbjct: 72  DIFLYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNS 131

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           R+++HQP GGF GQASDI+ HA++I+ IK +LN +  ++ G+  E +E+  DRD+ MSA 
Sbjct: 132 RVMIHQPLGGFQGQASDIQIHAKEILTIKNKLNRLLAEHTGQPLEVIERDTDRDNFMSAD 191

Query: 194 EACDWGVVDKVLMSR 208
           +A ++G+VD VL  R
Sbjct: 192 QAVEYGLVDAVLKHR 206


>gi|296116539|ref|ZP_06835149.1| ATP-dependent Clp protease proteolytic subunit [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295976751|gb|EFG83519.1| ATP-dependent Clp protease proteolytic subunit [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 211

 Score =  277 bits (709), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 124/189 (65%), Positives = 161/189 (85%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQT+RGER++DIYSRLL+ERI+F+TG + D ++ ++ AQLL+LE+ NP KEIS
Sbjct: 13  ALVPMVVEQTSRGERAFDIYSRLLQERIIFLTGPVYDQVSAVVSAQLLYLESVNPTKEIS 72

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            YINSPGGVV+AG+AIYDTMQ+I+ P+ST C+GQAASMGSLLL+ GEKG RFALPN+R++
Sbjct: 73  FYINSPGGVVSAGLAIYDTMQYIRSPVSTVCIGQAASMGSLLLAGGEKGRRFALPNSRVM 132

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  GQASDIE  A +I+ I++RLNEIY  + G+T EE+E+ L+RD  MSA EAC
Sbjct: 133 VHQPSGGAQGQASDIEIQATEILTIRKRLNEIYENHTGRTLEEIERKLERDSYMSAEEAC 192

Query: 197 DWGVVDKVL 205
            +G+VD+V+
Sbjct: 193 AFGIVDEVV 201


>gi|224824981|ref|ZP_03698087.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lutiella
           nitroferrum 2002]
 gi|224602652|gb|EEG08829.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lutiella
           nitroferrum 2002]
          Length = 207

 Score =  277 bits (709), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 126/197 (63%), Positives = 160/197 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LGLVPMVVEQ+ RGER+YDIYSRLLKERIVF+ G + D  A L+ AQ+LFLE+ENP K+I
Sbjct: 10  LGLVPMVVEQSGRGERAYDIYSRLLKERIVFLVGPVTDESANLVVAQMLFLESENPDKDI 69

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG V+AGM+I+DTM FIKP +ST C+GQAASMG+ LLSAG KG RFALPN+RI
Sbjct: 70  YFYINSPGGSVSAGMSIFDTMNFIKPDVSTLCIGQAASMGAFLLSAGAKGKRFALPNSRI 129

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQASD E HA++I+ +KRRLNE+   + G++ EE+E+  DRD+ MS+ EA
Sbjct: 130 MIHQPLGGFQGQASDFEIHAKNILYMKRRLNELLALHTGRSIEEIERDTDRDNFMSSEEA 189

Query: 196 CDWGVVDKVLMSRIDIE 212
             +G++DK+L SR D +
Sbjct: 190 LAYGLIDKMLQSRRDAQ 206


>gi|114048055|ref|YP_738605.1| ATP-dependent Clp protease proteolytic subunit [Shewanella sp.
           MR-7]
 gi|123326387|sp|Q0HTK7|CLPP_SHESR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|113889497|gb|ABI43548.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella sp.
           MR-7]
          Length = 202

 Score =  277 bits (709), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 126/199 (63%), Positives = 162/199 (81%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           ++ D+   LVPMV+EQT +GERS+DIYSRLLKERI+F+ GQ+E+HMA LI AQLLFLE+E
Sbjct: 3   NASDIQSALVPMVIEQTAKGERSFDIYSRLLKERIIFLVGQVEEHMANLIVAQLLFLESE 62

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           +P K+I LYINSPGG VTAGMAIYDTMQFIKP +ST C+GQAASMG+ LL+ GEKG RF 
Sbjct: 63  SPDKDIFLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFLLAGGEKGKRFC 122

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPN+R+++HQP GGF GQASDI  HAQ+I+ IK +LN +  ++ G+  E +E+  DRD+ 
Sbjct: 123 LPNSRVMIHQPLGGFQGQASDIAIHAQEILGIKHKLNLMLAEHTGQPLEVIERDTDRDNF 182

Query: 190 MSASEACDWGVVDKVLMSR 208
           MSA++A D+G+VD V+  R
Sbjct: 183 MSATQAVDYGLVDAVMTKR 201


>gi|239948026|ref|ZP_04699779.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rickettsia
           endosymbiont of Ixodes scapularis]
 gi|239922302|gb|EER22326.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rickettsia
           endosymbiont of Ixodes scapularis]
          Length = 201

 Score =  277 bits (709), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 122/193 (63%), Positives = 162/193 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP+V+EQT+RGER+YDIYSRLLKERI+FV   +EDHM  LI AQLLFLEAENP+K+I
Sbjct: 1   MSYVPIVIEQTSRGERAYDIYSRLLKERIIFVCSTVEDHMTNLIVAQLLFLEAENPKKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGV+TAG+AIYDTMQ+IKP ++T C+GQA SMGSLLL  GEKGMR++LP++RI
Sbjct: 61  YMYINSPGGVITAGLAIYDTMQYIKPKVATLCIGQACSMGSLLLCGGEKGMRYSLPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG+ GQA+DIE HAQ+ +KIKR LNE+Y K+  +  + +EK+++RD+ MS  EA
Sbjct: 121 MIHQPSGGYKGQATDIEIHAQETLKIKRLLNELYSKHTRQELKHIEKSMERDNFMSPEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D ++ SR
Sbjct: 181 KKFGIIDNIISSR 193


>gi|323495056|ref|ZP_08100145.1| ATP-dependent Clp protease proteolytic subunit [Vibrio brasiliensis
           LMG 20546]
 gi|323310713|gb|EGA63888.1| ATP-dependent Clp protease proteolytic subunit [Vibrio brasiliensis
           LMG 20546]
          Length = 208

 Score =  277 bits (709), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 126/192 (65%), Positives = 158/192 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQT+RGERSYDIYSRLLKERI+F+TGQ+EDHMA L+ AQLLFLE+ENP K+I 
Sbjct: 15  ALVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLVVAQLLFLESENPDKDIF 74

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+ G  G R  LPN+R++
Sbjct: 75  LYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRHVLPNSRVM 134

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDI+ HAQ+I+ IK++LN++  ++ G+  E +E+  DRD+ MSA +A 
Sbjct: 135 IHQPLGGFQGQASDIQIHAQEILTIKQKLNKLLAEHTGQPLEVIERDTDRDNFMSADQAV 194

Query: 197 DWGVVDKVLMSR 208
           ++G+VD VL  R
Sbjct: 195 EYGLVDSVLNHR 206


>gi|209694398|ref|YP_002262326.1| ATP-dependent Clp protease proteolytic subunit [Aliivibrio
           salmonicida LFI1238]
 gi|226706438|sp|B6EHK3|CLPP_ALISL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|208008349|emb|CAQ78503.1| ATP-dependent Clp protease proteolytic subunit [Aliivibrio
           salmonicida LFI1238]
          Length = 207

 Score =  277 bits (709), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 125/192 (65%), Positives = 157/192 (81%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ AQLLFLE+ENP K+I 
Sbjct: 15  ALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIF 74

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+ G  G R+ LPN+R++
Sbjct: 75  LYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVM 134

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDI+ HAQ+I+ IK++LN +  ++ G+  E +EK  DRD+ M+A +A 
Sbjct: 135 IHQPLGGFQGQASDIQIHAQEILTIKKKLNTLLAEHTGQPLEVIEKDTDRDNFMAADDAV 194

Query: 197 DWGVVDKVLMSR 208
            +G+VD VL  R
Sbjct: 195 KYGLVDAVLNKR 206


>gi|59711403|ref|YP_204179.1| ATP-dependent Clp protease proteolytic subunit [Vibrio fischeri
           ES114]
 gi|197335304|ref|YP_002155557.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           fischeri MJ11]
 gi|67460143|sp|Q5E6Q5|CLPP_VIBF1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706555|sp|B5FBZ8|CLPP_VIBFM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|59479504|gb|AAW85291.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Vibrio fischeri ES114]
 gi|197316794|gb|ACH66241.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           fischeri MJ11]
          Length = 207

 Score =  277 bits (709), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 125/192 (65%), Positives = 157/192 (81%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ AQLLFLE+ENP K+I 
Sbjct: 15  ALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIF 74

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+ G  G R+ LPN+R++
Sbjct: 75  LYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVM 134

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDI+ HAQ+I+ IK++LN +  ++ G+  E +E+  DRD+ MSA +A 
Sbjct: 135 IHQPLGGFQGQASDIQIHAQEILTIKKKLNTLLAEHTGQPLEVIEQDTDRDNFMSADDAV 194

Query: 197 DWGVVDKVLMSR 208
            +G+VD VL  R
Sbjct: 195 KYGLVDAVLNKR 206


>gi|323498276|ref|ZP_08103278.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sinaloensis
           DSM 21326]
 gi|323316704|gb|EGA69713.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sinaloensis
           DSM 21326]
          Length = 208

 Score =  277 bits (709), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 124/192 (64%), Positives = 159/192 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ AQLLFLE+ENP K+I 
Sbjct: 15  ALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIF 74

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+ G  G R+ LPN+R++
Sbjct: 75  LYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVM 134

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDI+ HAQ+I+ IK++LN++  ++ G+  E +E+  DRD+ M+A +A 
Sbjct: 135 IHQPLGGFQGQASDIQIHAQEILTIKQKLNKLLAEHTGQPLEVIERDTDRDNFMAADQAV 194

Query: 197 DWGVVDKVLMSR 208
           ++G+VD VL  R
Sbjct: 195 EYGLVDAVLSHR 206


>gi|238650581|ref|YP_002916433.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
           peacockii str. Rustic]
 gi|259585964|sp|C4K1D4|CLPP_RICPU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|238624679|gb|ACR47385.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
           peacockii str. Rustic]
          Length = 201

 Score =  277 bits (709), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 125/193 (64%), Positives = 162/193 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP+VVE T+RGER+YDIYSRLLKERI+FV   +EDHMA LI AQLLFLEAENP+K+I
Sbjct: 1   MSYVPIVVEPTSRGERAYDIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAENPKKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG+AIYDTMQ+IKP ++T C+GQA SMGSLLL  GEKGMR++LP++RI
Sbjct: 61  YMYINSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSLLLCGGEKGMRYSLPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG+ GQA+DIE HAQ+ +KIKR LNE+Y K+  +  + +EK+++RD+ MS  EA
Sbjct: 121 MIHQPSGGYKGQATDIEIHAQETLKIKRLLNELYSKHTEQELKHIEKSMERDNFMSPEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD ++ SR
Sbjct: 181 KKFGLVDNIMSSR 193


>gi|254507754|ref|ZP_05119885.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           parahaemolyticus 16]
 gi|219549279|gb|EED26273.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           parahaemolyticus 16]
          Length = 208

 Score =  277 bits (709), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 124/192 (64%), Positives = 159/192 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ AQLLFLE+ENP K+I 
Sbjct: 15  ALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIF 74

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+ G  G R+ LPN+R++
Sbjct: 75  LYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVM 134

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDI+ HAQ+I+ IK++LN++  ++ G+  E +E+  DRD+ M+A +A 
Sbjct: 135 IHQPLGGFQGQASDIQIHAQEILTIKQKLNKLLAEHTGQPLEVIERDTDRDNFMAAEQAV 194

Query: 197 DWGVVDKVLMSR 208
           ++G+VD VL  R
Sbjct: 195 EYGLVDAVLSHR 206


>gi|88860444|ref|ZP_01135082.1| ATP-dependent Clp protease proteolytic subunit [Pseudoalteromonas
           tunicata D2]
 gi|88817642|gb|EAR27459.1| ATP-dependent Clp protease proteolytic subunit [Pseudoalteromonas
           tunicata D2]
          Length = 205

 Score =  277 bits (708), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 126/196 (64%), Positives = 157/196 (80%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
           D    LVPMVVEQT +GERSYDIYSRLLKER++F+TGQ+EDHMA LI AQLLFLE+ENP+
Sbjct: 7   DPLNALVPMVVEQTAKGERSYDIYSRLLKERVIFLTGQVEDHMANLIVAQLLFLESENPE 66

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K+I +YINSPGG VTAGMAIYDTM FIKP +ST CMGQAASMG+ LLS G KG RF LPN
Sbjct: 67  KDIFIYINSPGGSVTAGMAIYDTMNFIKPNVSTVCMGQAASMGAFLLSGGTKGKRFCLPN 126

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           +R+++HQP GGF GQASD E HA++I+ IK +LN +  ++ G+  E + +  DRD+ MS 
Sbjct: 127 SRVMIHQPLGGFQGQASDFEIHAREILSIKDKLNRLLAEHTGQPIEVISRDTDRDNFMSG 186

Query: 193 SEACDWGVVDKVLMSR 208
           ++A ++G+VD VL  R
Sbjct: 187 AQAVEYGIVDAVLTQR 202


>gi|329114674|ref|ZP_08243433.1| ATP-dependent Clp protease proteolytic subunit 1 [Acetobacter
           pomorum DM001]
 gi|326696154|gb|EGE47836.1| ATP-dependent Clp protease proteolytic subunit 1 [Acetobacter
           pomorum DM001]
          Length = 237

 Score =  277 bits (708), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 129/202 (63%), Positives = 169/202 (83%), Gaps = 1/202 (0%)

Query: 5   GCAKKDSEDVFL-GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQL 63
           G   +D  ++F   LVPMVVEQT+RGER++DIYSRLL+ERI+F+TG + D +A+LI AQL
Sbjct: 20  GMRDRDPVEIFSNALVPMVVEQTSRGERAFDIYSRLLQERIIFLTGPVYDQVASLISAQL 79

Query: 64  LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           L+LE+ NP KEIS YINSPGGVV+AG+AIYDTMQ+I+ P+ST C+GQAASMGSLLL+ GE
Sbjct: 80  LYLESVNPNKEISFYINSPGGVVSAGLAIYDTMQYIRSPVSTVCIGQAASMGSLLLAGGE 139

Query: 124 KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
           KG RFALPNAR+++HQPSGG  GQASDIE  A++I+ I+++LNEIY ++ G+T EE+E+ 
Sbjct: 140 KGRRFALPNARVMVHQPSGGAQGQASDIEIQAREILIIRQKLNEIYREHTGRTLEEIEQK 199

Query: 184 LDRDHIMSASEACDWGVVDKVL 205
           L+RD  MSA EA  +G+VD+V+
Sbjct: 200 LERDTYMSAHEAQSFGIVDEVI 221


>gi|90021255|ref|YP_527082.1| ATP-dependent Clp protease proteolytic subunit [Saccharophagus
           degradans 2-40]
 gi|116243165|sp|Q21KA9|CLPP_SACD2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|89950855|gb|ABD80870.1| ATP-dependent Clp protease proteolytic subunit ClpP [Saccharophagus
           degradans 2-40]
          Length = 212

 Score =  277 bits (708), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 126/192 (65%), Positives = 156/192 (81%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQT RGERSYDIYSRLLKER++F+ GQ+EDHMA L+ AQ+LFLEAENP K+I L
Sbjct: 18  LVPMVVEQTARGERSYDIYSRLLKERVIFLVGQVEDHMANLVVAQMLFLEAENPDKDIHL 77

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG++IYDTMQFIKP +ST C+GQA SMG+ LL+AG KG RF LPNAR ++
Sbjct: 78  YINSPGGSVTAGLSIYDTMQFIKPDVSTMCIGQACSMGAFLLTAGAKGKRFCLPNARTMI 137

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQASDI   AQ+I+K++ RLNEI   + G+  EE+ +  +RD  MSA E+ +
Sbjct: 138 HQPSGGAQGQASDIHIQAQEILKLRERLNEIMAGHTGRGVEEIARDTERDRFMSAHESVE 197

Query: 198 WGVVDKVLMSRI 209
           +G++DKVL  R+
Sbjct: 198 YGLIDKVLERRV 209


>gi|269138347|ref|YP_003295047.1| protease subunit of ATP-dependent Clp protease [Edwardsiella tarda
           EIB202]
 gi|267984007|gb|ACY83836.1| protease subunit of ATP-dependent Clp protease [Edwardsiella tarda
           EIB202]
 gi|304558379|gb|ADM41043.1| ATP-dependent Clp protease proteolytic subunit [Edwardsiella tarda
           FL6-60]
          Length = 189

 Score =  277 bits (708), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 125/188 (66%), Positives = 157/188 (83%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MVVEQT+RGERSYDI+SRLLKERI+F+TGQ+EDHMA LI AQ+LFLEAENP+K+I LYIN
Sbjct: 1   MVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAENPEKDIHLYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMGS LL+AG +G RF LPN+R+++HQP
Sbjct: 61  SPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGSFLLAAGAQGKRFCLPNSRVMIHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            GGF GQA+DIE HA++I+ IK R+N +  K+ G+  E +E+  +RD  MSA +A ++G+
Sbjct: 121 LGGFQGQATDIEIHAKEILSIKARMNTLMAKHSGQPIEVIERDTERDRFMSAQDAVEYGL 180

Query: 201 VDKVLMSR 208
           VD VL  R
Sbjct: 181 VDAVLTQR 188


>gi|289207758|ref|YP_003459824.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Thioalkalivibrio sp. K90mix]
 gi|288943389|gb|ADC71088.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thioalkalivibrio sp. K90mix]
          Length = 224

 Score =  277 bits (708), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 126/193 (65%), Positives = 159/193 (82%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           L LVPMVVEQT RGER+YDIYSRLLK+R++F  G +ED+MA +I AQLLFLE+ENP KEI
Sbjct: 16  LNLVPMVVEQTARGERAYDIYSRLLKDRVIFCVGPVEDYMANVIVAQLLFLESENPDKEI 75

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG VTAGMAIYDTMQFIKP +ST C+GQAASMG++LL+ G  G R++LP++R+
Sbjct: 76  SLYINSPGGAVTAGMAIYDTMQFIKPQVSTLCVGQAASMGAVLLAGGAPGKRYSLPHSRV 135

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQASDI+ HA++I+KI+  LN +   + G+T E+VE+  DRD  M+A EA
Sbjct: 136 MIHQPLGGFQGQASDIDIHAREILKIREELNRVLAHHTGQTVEQVEQDTDRDRFMTAVEA 195

Query: 196 CDWGVVDKVLMSR 208
            D+G+VD VL SR
Sbjct: 196 KDYGLVDNVLSSR 208


>gi|84515416|ref|ZP_01002778.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Loktanella
           vestfoldensis SKA53]
 gi|84510699|gb|EAQ07154.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Loktanella
           vestfoldensis SKA53]
          Length = 198

 Score =  277 bits (708), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 122/193 (63%), Positives = 163/193 (84%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT RGER+YDI+SRLLKERI+F+ G + D M+ L+ AQLL LE+ENP+KEI
Sbjct: 1   MNLVPMVVEQTARGERAYDIFSRLLKERIIFLNGPVHDGMSQLVVAQLLHLESENPKKEI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGGVVT+G++IYDTMQ+IKP +ST  +GQAASMGSLLL+AG  GMRF+LPN+R+
Sbjct: 61  SMYINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLTAGHPGMRFSLPNSRV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG+ GQA+DI  HA +  K+K RLNEIYVK+ G+  ++VE  L+RD+ MS  EA
Sbjct: 121 MVHQPSGGYQGQATDIMIHAAETQKLKTRLNEIYVKHTGQPLKKVETALERDNFMSPEEA 180

Query: 196 CDWGVVDKVLMSR 208
            +WG++D+++++R
Sbjct: 181 KEWGLIDEIVVNR 193


>gi|146337660|ref|YP_001202708.1| ATP-dependent Clp protease proteolytic subunit [Bradyrhizobium sp.
           ORS278]
 gi|146190466|emb|CAL74465.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           [Bradyrhizobium sp. ORS278]
          Length = 205

 Score =  277 bits (708), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 122/191 (63%), Positives = 159/191 (83%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMV+EQ++RGERS+DIYSRLL+ERIVF+ G++ D ++ L+CAQLLFLEAENP++ I L
Sbjct: 7   LVPMVIEQSSRGERSFDIYSRLLRERIVFLNGEVNDTVSALVCAQLLFLEAENPKRPIHL 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G+A+YDTMQF+K P+ T CMG A SMGS LL AGE G R ALPNA + +
Sbjct: 67  YINSPGGVVTSGLAMYDTMQFVKAPVHTLCMGTARSMGSFLLMAGEPGERTALPNASLHV 126

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQASDI  HA+++ + KRR+  +Y ++CG++YE+VE+TLDRDH M+A EA D
Sbjct: 127 HQPLGGFQGQASDIMIHAREMEQTKRRMIRLYAEHCGRSYEDVERTLDRDHFMTADEAQD 186

Query: 198 WGVVDKVLMSR 208
           WG++D+V+  R
Sbjct: 187 WGLIDRVVKQR 197


>gi|190573022|ref|YP_001970867.1| ATP-dependent Clp protease proteolytic subunit [Stenotrophomonas
           maltophilia K279a]
 gi|194364614|ref|YP_002027224.1| ATP-dependent Clp protease proteolytic subunit [Stenotrophomonas
           maltophilia R551-3]
 gi|226706475|sp|B2FQR2|CLPP_STRMK RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|190010944|emb|CAQ44553.1| ATP-dependent clp protease proteolytic subunit [Stenotrophomonas
           maltophilia K279a]
 gi|194347418|gb|ACF50541.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Stenotrophomonas maltophilia R551-3]
          Length = 208

 Score =  277 bits (708), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 124/201 (61%), Positives = 167/201 (83%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           D+    L LVPMVVEQT+RGER+YDIYSRLLKER++F+ G I+DHMA ++ AQLLFLE+E
Sbjct: 2   DNRTKALNLVPMVVEQTSRGERAYDIYSRLLKERLIFLVGPIDDHMANVVVAQLLFLESE 61

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP+K+I++YINSPGGVVTAGMAIYDTMQ+IKP +ST C+GQAASMG+LLL+AGE G R+A
Sbjct: 62  NPEKDINIYINSPGGVVTAGMAIYDTMQYIKPNVSTTCIGQAASMGALLLAAGEAGKRYA 121

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPN+R+++HQP GG+ GQA+DI+ HA++I+ ++ RLNE+  K+ G++ E + +  +RD+ 
Sbjct: 122 LPNSRVMIHQPLGGYQGQATDIDIHAREILTLRSRLNEVLAKHTGQSLETIARDTERDNF 181

Query: 190 MSASEACDWGVVDKVLMSRID 210
            SA EA  +G+VD+VL  R D
Sbjct: 182 KSAFEAQAYGLVDQVLERRPD 202


>gi|15604378|ref|NP_220894.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
           prowazekii str. Madrid E]
 gi|6225160|sp|Q9ZD29|CLPP_RICPR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|3861070|emb|CAA14970.1| ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT (clpP) [Rickettsia
           prowazekii]
 gi|292572133|gb|ADE30048.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
           prowazekii Rp22]
          Length = 201

 Score =  276 bits (707), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 124/193 (64%), Positives = 163/193 (84%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP+V+EQT+RGER+YDIYSRLLKERI+FV   +EDHMA LI AQLLFLEAENP+K+I
Sbjct: 1   MSYVPVVIEQTSRGERAYDIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAENPKKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG+AIYDTMQFIKP ++T C+GQA SMGSLLL  GE GMR++LP++RI
Sbjct: 61  YMYINSPGGVVTAGLAIYDTMQFIKPKVATLCIGQACSMGSLLLCGGEHGMRYSLPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG+ GQA+DIE HA++ +KIKR LNE+Y K+  +  + +EK+++RD+ MS+ EA
Sbjct: 121 MIHQPSGGYKGQATDIEIHARETLKIKRLLNELYSKHTKQELKYIEKSMERDNFMSSEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD ++ SR
Sbjct: 181 KKFGLVDNIISSR 193


>gi|157828616|ref|YP_001494858.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
           rickettsii str. 'Sheila Smith']
 gi|166214706|sp|A8GSH5|CLPP_RICRS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|157801097|gb|ABV76350.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
           rickettsii str. 'Sheila Smith']
          Length = 201

 Score =  276 bits (707), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 124/193 (64%), Positives = 162/193 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP+V+E T+RGER+YDIYSRLLKERI+FV   +EDHMA LI AQLLFLEAENP+K+I
Sbjct: 1   MSYVPIVIEPTSRGERAYDIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAENPKKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG+AIYDTMQ+IKP ++T C+GQA SMGSLLL  GEKGMR++LP++RI
Sbjct: 61  YMYINSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSLLLCGGEKGMRYSLPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG+ GQA+DIE HAQ+ +KIKR LNE+Y K+  +  + +EK+++RD+ MS  EA
Sbjct: 121 MIHQPSGGYKGQATDIEIHAQETLKIKRLLNELYSKHTEQELQHIEKSMERDNFMSPEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD ++ SR
Sbjct: 181 KKFGLVDNIISSR 193


>gi|194595677|gb|ACF77120.1| ATP-dependent Clp protease proteolytic subunit [Azospirillum
           brasilense]
          Length = 210

 Score =  276 bits (707), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 126/199 (63%), Positives = 164/199 (82%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           D E     LVPMV+EQTNRGER+YDIYSRLLKERI+F+ G + D +A+LIC+QLLFLE+E
Sbjct: 3   DFEPKMNALVPMVIEQTNRGERAYDIYSRLLKERIIFLIGGVNDAVASLICSQLLFLESE 62

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP K+I+LYINSPGG V+AG+AIYDTMQ+I+P +ST CMGQAASMGSLLL+AG  G RF+
Sbjct: 63  NPSKDIALYINSPGGYVSAGLAIYDTMQYIRPQVSTVCMGQAASMGSLLLAAGAPGKRFS 122

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPN+RI++HQPSGG  GQASDIE  AQ+I+K++ RLN+IYVK+ G++ + +E  ++RD  
Sbjct: 123 LPNSRIMIHQPSGGAQGQASDIEIQAQEILKLRSRLNDIYVKHTGQSLDTIEAAMERDKF 182

Query: 190 MSASEACDWGVVDKVLMSR 208
           MS  EA  +G++D+V+  R
Sbjct: 183 MSPEEAKAFGLIDEVVEKR 201


>gi|119713091|gb|ABL97160.1| ATP-dependent Clp protease proteolytic subunit [uncultured marine
           bacterium EB0_49D07]
          Length = 204

 Score =  276 bits (707), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 123/197 (62%), Positives = 168/197 (85%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E +  GLVPMVVEQT RGER++DIYSRLLKERI+F+TG I+D+++ L+ AQLLFLE+ENP
Sbjct: 2   ETINSGLVPMVVEQTPRGERAFDIYSRLLKERIIFLTGPIDDYISNLVVAQLLFLESENP 61

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+IS+YINSPGGV+T+G+AIYDTMQFI P +ST C+GQAASMGSLLL+ G +G RFAL 
Sbjct: 62  EKDISIYINSPGGVITSGLAIYDTMQFIAPEVSTLCIGQAASMGSLLLAGGAEGKRFALT 121

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+RI++HQP GGFSGQASD E HA++++ +K+++NEI  K+ GKT ++VE+  DRD+ ++
Sbjct: 122 NSRIMIHQPLGGFSGQASDFEIHAKEMLLVKQKVNEILSKHTGKTLKKVEQDTDRDNFLN 181

Query: 192 ASEACDWGVVDKVLMSR 208
           A+EA  +G++D++L  R
Sbjct: 182 ATEAVTYGIIDEILEKR 198


>gi|24373360|ref|NP_717403.1| ATP-dependent Clp protease proteolytic subunit [Shewanella
           oneidensis MR-1]
 gi|60389791|sp|Q8EG19|CLPP_SHEON RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|24347620|gb|AAN54847.1|AE015623_9 ATP-dependent Clp protease, proteolytic subunit [Shewanella
           oneidensis MR-1]
          Length = 202

 Score =  276 bits (707), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 125/199 (62%), Positives = 162/199 (81%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           ++ D+   LVPMV+EQT +GERS+DIYSRLLKERI+F+ GQ+E+HMA LI AQLLFLE+E
Sbjct: 3   NASDIQSALVPMVIEQTAKGERSFDIYSRLLKERIIFLVGQVEEHMANLIVAQLLFLESE 62

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           +P K+I LYINSPGG VTAGMAIYDTMQFIKP +ST C+GQAASMG+ LL+ GEKG RF 
Sbjct: 63  SPDKDIFLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFLLAGGEKGKRFC 122

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPN+R+++HQP GGF GQASDI  HAQ+I+ IK +LN++   + G+  E +E+  DRD+ 
Sbjct: 123 LPNSRVMIHQPLGGFQGQASDIAIHAQEILGIKNKLNQMLADHTGQPLEVIERDTDRDNF 182

Query: 190 MSASEACDWGVVDKVLMSR 208
           MSA++A ++G+VD V+  R
Sbjct: 183 MSATQAVEYGLVDAVMTKR 201


>gi|170727453|ref|YP_001761479.1| ATP-dependent Clp protease proteolytic subunit [Shewanella woodyi
           ATCC 51908]
 gi|226706474|sp|B1KLT7|CLPP_SHEWM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|169812800|gb|ACA87384.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
           woodyi ATCC 51908]
          Length = 203

 Score =  276 bits (707), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 127/197 (64%), Positives = 157/197 (79%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E V   LVPMVVEQT +GERSYDIYSRLLKER++F+ GQ+E+HMA LI AQLLFLE+ENP
Sbjct: 6   ESVLNALVPMVVEQTAKGERSYDIYSRLLKERVIFLVGQVEEHMANLIVAQLLFLESENP 65

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            +EISLYINSPGG VTAGMAIYDTMQFIKP +ST C+GQAASMG+ LL+ G KG R  LP
Sbjct: 66  DQEISLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFLLAGGAKGKRHCLP 125

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+R+++HQP GGF GQASD   HAQ+I+ IK +LN I  ++ G+  E +E+  DRD+ MS
Sbjct: 126 NSRVMIHQPLGGFQGQASDFAIHAQEILGIKNKLNNILAEHTGQPLEVIERDTDRDNFMS 185

Query: 192 ASEACDWGVVDKVLMSR 208
           A++A ++G+VD V   R
Sbjct: 186 AAQAAEYGLVDSVFEQR 202


>gi|241203529|ref|YP_002974625.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240857419|gb|ACS55086.1| Endopeptidase Clp [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 203

 Score =  276 bits (707), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 120/193 (62%), Positives = 161/193 (83%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMV+EQ++RGERS+DIYSRLL+ERI+F+ G++ D ++ L+CAQLLFLEAENP+K I+L
Sbjct: 7   LVPMVIEQSSRGERSFDIYSRLLRERIIFLNGEVNDTVSALVCAQLLFLEAENPKKPINL 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G+A+YDTM+FI+ P+ T CMG A SMGS LL AGE G R ALPNA IL+
Sbjct: 67  YINSPGGVVTSGLAMYDTMRFIRAPVHTLCMGTARSMGSFLLMAGEAGGRAALPNASILI 126

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGGF GQASD+  HA++I+K K+R+  +Y ++CG++YE+ E+ +DRD  M+A EA +
Sbjct: 127 HQPSGGFQGQASDMMIHAEEILKTKQRMTRLYAEHCGRSYEDFERGMDRDRFMTAEEALE 186

Query: 198 WGVVDKVLMSRID 210
           WG++D++L  R D
Sbjct: 187 WGLIDRILTVRED 199


>gi|153829246|ref|ZP_01981913.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           cholerae 623-39]
 gi|148875284|gb|EDL73419.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           cholerae 623-39]
          Length = 200

 Score =  276 bits (707), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 125/195 (64%), Positives = 158/195 (81%)

Query: 14  VFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQK 73
           +F   VPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ AQLLFLE+ENP K
Sbjct: 4   IFDAXVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDK 63

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+ G  G R+ LPN+
Sbjct: 64  DIFLYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNS 123

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           R+++HQP GGF GQASDI+ HAQ+I+ IK +LN +  ++ G+  E +E+  DRD+ MSA 
Sbjct: 124 RVMIHQPLGGFQGQASDIQIHAQEILTIKNKLNRLLAEHTGQPIEVIERDTDRDNFMSAD 183

Query: 194 EACDWGVVDKVLMSR 208
           +A ++G+VD VL  R
Sbjct: 184 QAVEYGLVDAVLKHR 198


>gi|42520204|ref|NP_966119.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|60389690|sp|Q73I59|CLPP_WOLPM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|42409942|gb|AAS14053.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia
           endosymbiont of Drosophila melanogaster]
          Length = 208

 Score =  276 bits (707), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 122/197 (61%), Positives = 167/197 (84%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P+VVEQT+RGER+YDIYSRL+KERI+FVTG IED+MA++I AQLLFLE+ENP K+I
Sbjct: 1   MTLIPIVVEQTSRGERAYDIYSRLVKERIIFVTGPIEDNMASVIVAQLLFLESENPNKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG++IYDTMQ+I P +ST C+GQAASMGSLLL+AG KG R++LP++RI
Sbjct: 61  CMYINSPGGVVTAGLSIYDTMQYINPDVSTLCIGQAASMGSLLLAAGTKGKRYSLPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG+ GQA+DIE HA +I+++K++LN+IY K+ G + +++E  ++RD  M   EA
Sbjct: 121 MIHQPSGGYHGQATDIEIHANEILRVKKKLNQIYEKHTGNSLKKIEGMMERDKFMDPEEA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
              G++D+V+  R DIE
Sbjct: 181 RKIGLIDRVIAERTDIE 197


>gi|34581620|ref|ZP_00143100.1| ATP-dependent clp protease proteolytic subunit [Rickettsia sibirica
           246]
 gi|20137864|sp|Q92HM5|CLPP_RICCN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|28263005|gb|EAA26509.1| ATP-dependent clp protease proteolytic subunit [Rickettsia sibirica
           246]
          Length = 201

 Score =  276 bits (707), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 124/193 (64%), Positives = 162/193 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP+V+E T+RGER+YDIYSRLLKERI+FV   +EDHMA LI AQLLFLEAENP+K+I
Sbjct: 1   MSYVPIVIEPTSRGERAYDIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAENPKKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG+AIYDTMQ+IKP ++T C+GQA SMGSLLL  GEKGMR++LP++RI
Sbjct: 61  YMYINSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSLLLCGGEKGMRYSLPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG+ GQA+DIE HAQ+ +KIKR LNE+Y K+  +  + +EK+++RD+ MS  EA
Sbjct: 121 MIHQPSGGYKGQATDIEIHAQETLKIKRLLNELYSKHTEQELKHIEKSMERDNFMSPEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD ++ SR
Sbjct: 181 KKFGLVDNIMSSR 193


>gi|226939792|ref|YP_002794865.1| Protease subunit of ATP-dependent Clp protease [Laribacter
           hongkongensis HLHK9]
 gi|254763792|sp|C1D539|CLPP_LARHH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226714718|gb|ACO73856.1| Protease subunit of ATP-dependent Clp protease [Laribacter
           hongkongensis HLHK9]
          Length = 212

 Score =  276 bits (707), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 123/193 (63%), Positives = 161/193 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LGLVPMVVEQ+ RGER+YDIYSRLLKERIVF+ G + D  A L+ AQ+LFLE+ENP K+I
Sbjct: 17  LGLVPMVVEQSGRGERAYDIYSRLLKERIVFMVGPVTDETANLVVAQMLFLESENPDKDI 76

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG++IYDTM FIKP +ST C+GQAASMG+ LLSAG KG RFALPN+R+
Sbjct: 77  HLYINSPGGSVTAGLSIYDTMNFIKPSVSTLCIGQAASMGAFLLSAGAKGKRFALPNSRV 136

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQASD E HA++I+ +KR+LNE+   +CG+  E++E+  DRD+ M+A++A
Sbjct: 137 MIHQPLGGFQGQASDFEIHAREILTLKRKLNELMAAHCGRPLEDLERDTDRDNFMNAAQA 196

Query: 196 CDWGVVDKVLMSR 208
            ++G++D+VL +R
Sbjct: 197 LEYGLIDQVLENR 209


>gi|312882507|ref|ZP_07742248.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309369907|gb|EFP97418.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 208

 Score =  276 bits (707), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 123/192 (64%), Positives = 158/192 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ AQLLFLE+ENP K+I 
Sbjct: 15  ALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIF 74

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+ G  G R+ LPN+R++
Sbjct: 75  LYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVM 134

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDI+ HAQ+I+ IK++LN +  ++ G+  + +E+  DRD+ MSA +A 
Sbjct: 135 IHQPLGGFQGQASDIQIHAQEILTIKKKLNTLLAEHTGQPLDVIERDTDRDNFMSADQAV 194

Query: 197 DWGVVDKVLMSR 208
           ++G+VD +L  R
Sbjct: 195 EYGLVDSMLTHR 206


>gi|120599414|ref|YP_963988.1| ATP-dependent Clp protease proteolytic subunit [Shewanella sp.
           W3-18-1]
 gi|146292590|ref|YP_001183014.1| ATP-dependent Clp protease proteolytic subunit [Shewanella
           putrefaciens CN-32]
 gi|166214710|sp|A4Y5I2|CLPP_SHEPC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166214712|sp|A1RL89|CLPP_SHESW RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|120559507|gb|ABM25434.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella sp.
           W3-18-1]
 gi|145564280|gb|ABP75215.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
           putrefaciens CN-32]
 gi|319425892|gb|ADV53966.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
           putrefaciens 200]
          Length = 202

 Score =  276 bits (707), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 126/199 (63%), Positives = 162/199 (81%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           ++ D+   LVPMV+EQT +GERSYDIYSRLLKERI+F+ GQ+E+HMA LI AQLLFLE+E
Sbjct: 3   NASDIQNALVPMVIEQTAKGERSYDIYSRLLKERIIFLVGQVEEHMANLIVAQLLFLESE 62

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           +P K+I LYINSPGG VTAGMAIYDTMQFIKP +ST C+GQAASMG+ LL+ GEKG RF 
Sbjct: 63  SPDKDIFLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFLLAGGEKGKRFC 122

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPN+R+++HQP GGF GQASDI  HAQ+I+ IK +LN +  ++ G+  E +E+  DRD+ 
Sbjct: 123 LPNSRVMIHQPLGGFQGQASDIAIHAQEILGIKHKLNLMLAEHTGQPLEVIERDTDRDNF 182

Query: 190 MSASEACDWGVVDKVLMSR 208
           MSA++A ++G+VD V+  R
Sbjct: 183 MSATQAVEYGLVDSVMTKR 201


>gi|218672149|ref|ZP_03521818.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli
           GR56]
          Length = 203

 Score =  276 bits (706), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 120/195 (61%), Positives = 162/195 (83%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMV+EQ++RGERS+DIYSRLL+ERI+F+ G++ D ++ L+CAQLLFLEAENP+K I+L
Sbjct: 7   LVPMVIEQSSRGERSFDIYSRLLRERIIFLNGEVNDTVSALVCAQLLFLEAENPKKPINL 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G+A+YDTM+FI+ P+ T CMG A SMGS LL AGE G R ALPNA IL+
Sbjct: 67  YINSPGGVVTSGLAMYDTMRFIRAPVHTLCMGTARSMGSFLLMAGEAGERAALPNASILI 126

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGGF GQASD+  HA++I+K K+R+  +Y ++CG++YE+ E+ +DRD  M+A EA +
Sbjct: 127 HQPSGGFQGQASDMLIHAEEILKTKQRMTRLYAEHCGRSYEDFERGMDRDRFMTAEEALE 186

Query: 198 WGVVDKVLMSRIDIE 212
           WG++D++L  R D +
Sbjct: 187 WGLIDRILKVREDTD 201


>gi|332038369|gb|EGI74814.1| ATP-dependent Clp protease proteolytic subunit [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 205

 Score =  276 bits (706), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 127/196 (64%), Positives = 158/196 (80%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
           D    LVPMVVEQT +GERSYDIYSRLLKERI+F+TGQ+ED+MA LI AQ+LFLE+ENP 
Sbjct: 7   DPLNALVPMVVEQTPKGERSYDIYSRLLKERIIFLTGQVEDNMANLILAQMLFLESENPD 66

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K+I LYINSPGG VTAGMAIYDTM FIKP +ST C+GQAASMG+ LL+AG KG RF LPN
Sbjct: 67  KDIFLYINSPGGSVTAGMAIYDTMNFIKPDVSTICVGQAASMGAFLLTAGAKGKRFCLPN 126

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           +R+++HQP GGF GQASD E HA++I+ IK +LN +  ++ G+  + + K  DRD+ MSA
Sbjct: 127 SRVMIHQPLGGFQGQASDFEIHAKEILSIKDKLNRLMAEHTGQPLDIISKDTDRDNFMSA 186

Query: 193 SEACDWGVVDKVLMSR 208
           S+A D+G+VD V  +R
Sbjct: 187 SQAVDYGLVDSVFTNR 202


>gi|237807855|ref|YP_002892295.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Tolumonas
           auensis DSM 9187]
 gi|237500116|gb|ACQ92709.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Tolumonas
           auensis DSM 9187]
          Length = 207

 Score =  276 bits (706), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 126/191 (65%), Positives = 157/191 (82%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+VVEQT RGERSYDIYSRLLKER++F+TGQ+ED MA LI AQLLFLE+ENP K+I +
Sbjct: 16  LVPIVVEQTARGERSYDIYSRLLKERVIFLTGQVEDQMANLIVAQLLFLESENPDKDIYI 75

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGMAIYDT++FIKP +ST CMGQA SMG+ LLSAG KG RF LP+AR+++
Sbjct: 76  YINSPGGSVTAGMAIYDTLKFIKPDVSTVCMGQACSMGAFLLSAGTKGKRFCLPSARVMI 135

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQASDI+ HA +I+KIK RLN +  ++ G+  E +E+  DRD+ MSA +A +
Sbjct: 136 HQPLGGFQGQASDIQIHAMEILKIKERLNNLLAEHTGQPLERIERDTDRDNFMSADQAVE 195

Query: 198 WGVVDKVLMSR 208
           +G+VD +L  R
Sbjct: 196 YGLVDAILKKR 206


>gi|134094958|ref|YP_001100033.1| ATP-dependent Clp protease proteolytic subunit [Herminiimonas
           arsenicoxydans]
 gi|133738861|emb|CAL61908.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           [Herminiimonas arsenicoxydans]
          Length = 209

 Score =  276 bits (706), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 124/194 (63%), Positives = 157/194 (80%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
            LG+VPMV+EQ+ RGER+YDIYSRLLKER++F+ G + DH A LI AQLLFLE+ENP K+
Sbjct: 15  MLGMVPMVIEQSGRGERAYDIYSRLLKERVIFLVGPVNDHAANLIVAQLLFLESENPDKD 74

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           ISLYINSPGG V+AGMAI+DTMQFIKP +ST C G AASMG+ LL+AGEKG RF+LPN+R
Sbjct: 75  ISLYINSPGGSVSAGMAIFDTMQFIKPNVSTLCTGLAASMGAFLLAAGEKGKRFSLPNSR 134

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQP GG  GQASDIE  A++I+ ++ RLN+I     GKT EE+ +  DRD+ MSA  
Sbjct: 135 IMIHQPLGGAQGQASDIEIQAREILYLRERLNQILADRTGKTLEEISRDTDRDNFMSADA 194

Query: 195 ACDWGVVDKVLMSR 208
           A ++G++DKVL +R
Sbjct: 195 AVEYGMIDKVLTTR 208


>gi|116062109|dbj|BAF34687.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           protease [Aeromonas veronii]
          Length = 207

 Score =  276 bits (706), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 126/192 (65%), Positives = 155/192 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            L+PMVVEQT +GERSYDIYSRLLKER++F+TGQ+EDHMA L+ AQLLFLE+ENP ++IS
Sbjct: 15  ALIPMVVEQTAKGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDQDIS 74

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+ G KG RF LPNAR++
Sbjct: 75  IYINSPGGAVTAGMSIYDTMQFIKPDVSTVCMGQACSMGAFLLAGGAKGKRFCLPNARVM 134

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDI+ HAQ+I+KIK  LNE    + G+    +E+  DRD+ MSA +A 
Sbjct: 135 IHQPLGGFQGQASDIQIHAQEILKIKNTLNERLAFHTGQDMATIERDTDRDNFMSAEQAV 194

Query: 197 DWGVVDKVLMSR 208
            +G+VD VL  R
Sbjct: 195 AYGLVDGVLSQR 206


>gi|260773194|ref|ZP_05882110.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
           metschnikovii CIP 69.14]
 gi|260612333|gb|EEX37536.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
           metschnikovii CIP 69.14]
          Length = 208

 Score =  276 bits (706), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 122/192 (63%), Positives = 157/192 (81%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQT+RGERSYDIYSRLLK+R++F+TGQ+EDHMA L+ AQLLFLE+ENP K+I 
Sbjct: 15  ALVPMVVEQTSRGERSYDIYSRLLKDRVIFLTGQVEDHMANLVVAQLLFLESENPDKDIF 74

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+ LL+ G  G R+ LPN+R++
Sbjct: 75  LYINSPGGSVTAGMSIYDTMQFIKPNVSTLCVGQACSMGAFLLAGGAPGKRYVLPNSRVM 134

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDI+ HAQ+I+ IK +LN +  ++ G+  + +E+  DRD+ MSA +A 
Sbjct: 135 IHQPLGGFQGQASDIQIHAQEILSIKNKLNTLLAEHTGQPLDVIERDTDRDNFMSAQQAV 194

Query: 197 DWGVVDKVLMSR 208
           D+G+VD +L  R
Sbjct: 195 DYGIVDAILTHR 206


>gi|58696873|ref|ZP_00372388.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|58699505|ref|ZP_00374232.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|225630255|ref|YP_002727046.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia sp.
           wRi]
 gi|254763810|sp|C0R2W3|CLPP_WOLWR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|58533978|gb|EAL58250.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|58536916|gb|EAL60096.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|225592236|gb|ACN95255.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia sp.
           wRi]
          Length = 208

 Score =  276 bits (706), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 122/197 (61%), Positives = 167/197 (84%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P+VVEQT+RGER+YDIYSRL+KERI+FVTG IED+MA++I AQLLFLE+ENP K+I
Sbjct: 1   MTLIPIVVEQTSRGERAYDIYSRLVKERIIFVTGPIEDNMASVIVAQLLFLESENPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG++IYDTMQ+I P +ST C+GQAASMGSLLL+AG KG R++LP++RI
Sbjct: 61  CMYINSPGGVVTAGLSIYDTMQYINPDVSTLCIGQAASMGSLLLAAGTKGKRYSLPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG+ GQA+DIE HA +I+++K++LN+IY K+ G + +++E  ++RD  M   EA
Sbjct: 121 MIHQPSGGYHGQATDIEIHANEILRVKKKLNQIYEKHTGNSLKKIEGMMERDKFMDPEEA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
              G++D+V+  R DIE
Sbjct: 181 RKIGLIDRVIAERTDIE 197


>gi|229591362|ref|YP_002873481.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           fluorescens SBW25]
 gi|259585962|sp|C3JYK0|CLPP_PSEFS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|229363228|emb|CAY50311.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pseudomonas
           fluorescens SBW25]
          Length = 211

 Score =  276 bits (705), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 126/192 (65%), Positives = 158/192 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMVVEQ+ RGER+YDIYSRLLKER++F+ G +ED+MA LICAQLLFLEAENP K+I 
Sbjct: 18  GLVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIH 77

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+ LL+AG +G RF LPN+R++
Sbjct: 78  LYINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGAFLLTAGAEGKRFCLPNSRVM 137

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+ I+ RLN +  K+ G T EE+E+  +RD+ MSA  A 
Sbjct: 138 IHQPLGGFQGQASDIEIHAKEILFIRERLNTLMAKHSGHTLEEIERDTNRDNFMSAEAAR 197

Query: 197 DWGVVDKVLMSR 208
           D+G++D V+  R
Sbjct: 198 DYGLIDAVIDKR 209


>gi|152980689|ref|YP_001353221.1| protease subunit of ATP-dependent Clp proteases [Janthinobacterium
           sp. Marseille]
 gi|226706516|sp|A6SY74|CLPP_JANMA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|151280766|gb|ABR89176.1| protease subunit of ATP-dependent Clp proteases [Janthinobacterium
           sp. Marseille]
          Length = 210

 Score =  276 bits (705), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 126/194 (64%), Positives = 156/194 (80%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
            LG+VPMV+EQ+ RGER+YDIYSRLLKERI+F+ G + D MA LI AQLLFLE+ENP K+
Sbjct: 16  MLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDQMANLIVAQLLFLESENPDKD 75

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           ISLYINSPGG V+AGMAIYDTMQFIKP +ST C G AASMG+ LL+AGEKG RF+LPN+R
Sbjct: 76  ISLYINSPGGSVSAGMAIYDTMQFIKPNVSTLCTGLAASMGAFLLAAGEKGKRFSLPNSR 135

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQP GG  GQASDIE  A++I+ ++ RLN I  +  GK+ EE+ K  DRD+ MSA  
Sbjct: 136 IMIHQPLGGAQGQASDIEIQAREILYLRERLNAILAERTGKSVEEIAKDTDRDNFMSADA 195

Query: 195 ACDWGVVDKVLMSR 208
           A  +G++DKVL +R
Sbjct: 196 AVTYGMIDKVLATR 209


>gi|71907348|ref|YP_284935.1| ATP-dependent Clp protease proteolytic subunit ClpP [Dechloromonas
           aromatica RCB]
 gi|110816458|sp|Q47FB6|CLPP_DECAR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|71846969|gb|AAZ46465.1| ATP-dependent Clp protease proteolytic subunit ClpP [Dechloromonas
           aromatica RCB]
          Length = 209

 Score =  276 bits (705), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 125/193 (64%), Positives = 157/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LGLVPMVVEQ+ RGER+YDIYSRLLKER++F+ G + D  A L+ AQLLFLEAENP K+I
Sbjct: 14  LGLVPMVVEQSGRGERAYDIYSRLLKERVIFLVGPVNDVTANLVVAQLLFLEAENPDKDI 73

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG VTAGM+IYDTMQFIKP +ST C+GQAASMG+ LL+AG KG RFALPN+R+
Sbjct: 74  YFYINSPGGSVTAGMSIYDTMQFIKPDVSTLCIGQAASMGAFLLNAGAKGKRFALPNSRV 133

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQASDI  HA++I+ I+ RLN I  ++ G+  E +EK  DRD+ +SA+EA
Sbjct: 134 MIHQPLGGFQGQASDIAIHAKEILSIRDRLNRIMAEHSGQPLERIEKDTDRDNFLSAAEA 193

Query: 196 CDWGVVDKVLMSR 208
            ++G++DKVL  R
Sbjct: 194 AEYGLIDKVLTRR 206


>gi|117620419|ref|YP_856542.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117561826|gb|ABK38774.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 200

 Score =  276 bits (705), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 126/191 (65%), Positives = 155/191 (81%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+PMVVEQT +GERSYDIYSRLLKER++F+TGQ+EDHMA L+ AQLLFLE+ENP ++IS+
Sbjct: 9   LIPMVVEQTAKGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDQDISI 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+ G KG RF LPNAR+++
Sbjct: 69  YINSPGGAVTAGMSIYDTMQFIKPDVSTVCMGQACSMGAFLLAGGAKGKRFCLPNARVMI 128

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQASDI+ HAQ+I+KIK  LNE    + G+    +E+  DRD+ MSA +A  
Sbjct: 129 HQPLGGFQGQASDIQIHAQEILKIKNTLNERLAFHTGQDMATIERDTDRDNFMSAEQAVA 188

Query: 198 WGVVDKVLMSR 208
           +G+VD VL  R
Sbjct: 189 YGLVDGVLSRR 199


>gi|77459919|ref|YP_349426.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           fluorescens Pf0-1]
 gi|92087005|sp|Q3K9W9|CLPP_PSEPF RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|77383922|gb|ABA75435.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pseudomonas
           fluorescens Pf0-1]
          Length = 211

 Score =  276 bits (705), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 125/192 (65%), Positives = 159/192 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMVVEQ+ RGER+YDIYSRLLKER++F+ G +ED+MA LICAQLLFLEAENP K+I 
Sbjct: 18  GLVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIH 77

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+ LL+AG  G RF LPN+R++
Sbjct: 78  LYINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGAFLLTAGAPGKRFCLPNSRVM 137

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+ I+ RLN +  K+ G+T EE+E+  +RD+ MSA  A 
Sbjct: 138 IHQPLGGFQGQASDIEIHAKEILFIRERLNTLMAKHSGRTLEEIERDTNRDNFMSAEAAK 197

Query: 197 DWGVVDKVLMSR 208
           ++G++D+V+  R
Sbjct: 198 EYGLIDEVINQR 209


>gi|6685315|sp|Q9X6W8|CLPP_AZOBR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|5002357|gb|AAD37435.1|AF150957_2 heat-shock protein ClpP [Azospirillum brasilense]
          Length = 210

 Score =  276 bits (705), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 126/199 (63%), Positives = 163/199 (81%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           D E     LVPMV+EQTNRGER YDIYSRLLKERI+F+ G + D +A+LIC+QLLFLE+E
Sbjct: 3   DFEPKMNALVPMVIEQTNRGERGYDIYSRLLKERIIFLIGGVNDAVASLICSQLLFLESE 62

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP K+I+LYINSPGG V+AG+AIYDTMQ+I+P +ST CMGQAASMGSLLL+AG  G RF+
Sbjct: 63  NPSKDIALYINSPGGYVSAGLAIYDTMQYIRPQVSTVCMGQAASMGSLLLAAGAPGKRFS 122

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPN+RI++HQPSGG  GQASDIE  AQ+I+K++ RLN+IYVK+ G++ + +E  ++RD  
Sbjct: 123 LPNSRIMIHQPSGGAQGQASDIEIQAQEILKLRSRLNDIYVKHTGQSLDTIEAXMERDKF 182

Query: 190 MSASEACDWGVVDKVLMSR 208
           MS  EA  +G++D+V+  R
Sbjct: 183 MSPEEAKAFGLIDEVVEKR 201


>gi|307293097|ref|ZP_07572943.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sphingobium
           chlorophenolicum L-1]
 gi|306881163|gb|EFN12379.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sphingobium
           chlorophenolicum L-1]
          Length = 211

 Score =  275 bits (704), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 126/196 (64%), Positives = 162/196 (82%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
           D    LVP+V+EQ+NRGERS+DIYSRLL+ERI+FVTGQ+EDHMA+LI AQLLFLE+ENP+
Sbjct: 7   DPMAALVPIVIEQSNRGERSFDIYSRLLRERIIFVTGQVEDHMASLIVAQLLFLESENPK 66

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K+I +YINSPGGVVT+GMAI+DTM++I+P + T C+GQAASMGS LL+AGE G R AL N
Sbjct: 67  KDIWMYINSPGGVVTSGMAIHDTMKYIRPQVGTVCIGQAASMGSFLLAAGEPGKRIALSN 126

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           ARI++HQPSGG  G ASDIE  A++I++I+ RLN +YV+  G+T EEVE+ +DRD  + A
Sbjct: 127 ARIMVHQPSGGAQGMASDIEIQAKEILRIRSRLNNLYVQYTGRTLEEVERAMDRDTFLEA 186

Query: 193 SEACDWGVVDKVLMSR 208
            EA  +G+VD+V   R
Sbjct: 187 EEAKAFGLVDEVFDRR 202


>gi|315127189|ref|YP_004069192.1| ATP-dependent Clp protease proteolytic subunit [Pseudoalteromonas
           sp. SM9913]
 gi|315015703|gb|ADT69041.1| ATP-dependent Clp protease proteolytic subunit [Pseudoalteromonas
           sp. SM9913]
          Length = 205

 Score =  275 bits (704), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 126/196 (64%), Positives = 158/196 (80%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
           D    LVPMVVEQT +GERS+DIYSRLLKERI+F+TGQ+ED+MA LI AQ+LFLE+ENP+
Sbjct: 7   DPLNALVPMVVEQTAKGERSFDIYSRLLKERIIFLTGQVEDNMANLILAQMLFLESENPE 66

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K+I LYINSPGG VTAGMAIYDTM FIKP +ST C+GQAASMG+ LLS G KG RF LPN
Sbjct: 67  KDIFLYINSPGGSVTAGMAIYDTMNFIKPDVSTICVGQAASMGAFLLSGGAKGKRFCLPN 126

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           +R+++HQP GGF GQASD E HA++I+ IK +LN +  ++ G+  + V +  DRD+ MSA
Sbjct: 127 SRVMIHQPLGGFQGQASDFEIHAKEILSIKDKLNRLMAEHTGQPLDVVSRDTDRDNFMSA 186

Query: 193 SEACDWGVVDKVLMSR 208
           S+A D+G+VD V  +R
Sbjct: 187 SQAVDYGIVDSVFTNR 202


>gi|70731346|ref|YP_261087.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           fluorescens Pf-5]
 gi|110816462|sp|Q4K9J6|CLPP_PSEF5 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|68345645|gb|AAY93251.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
           fluorescens Pf-5]
          Length = 211

 Score =  275 bits (704), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 125/192 (65%), Positives = 159/192 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMVVEQ+ RGER+YDIYSRLLKER++F+ G +ED+MA LICAQLLFLEAENP K+I 
Sbjct: 18  GLVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIH 77

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+ LL+AG  G RF LPN+R++
Sbjct: 78  LYINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGAFLLTAGAPGKRFCLPNSRVM 137

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+ I+ RLN +  K+ G+T EE+E+  +RD+ MSA  A 
Sbjct: 138 IHQPLGGFQGQASDIEIHAKEILFIRERLNTLMAKHSGRTLEEIERDTNRDNFMSAEAAR 197

Query: 197 DWGVVDKVLMSR 208
           ++G++D+V+  R
Sbjct: 198 EYGLIDEVINQR 209


>gi|285017388|ref|YP_003375099.1| ATP-dependent clp protease proteolytic subunit protein [Xanthomonas
           albilineans GPE PC73]
 gi|283472606|emb|CBA15111.1| probable atp-dependent clp protease proteolytic subunit protein
           [Xanthomonas albilineans]
          Length = 208

 Score =  275 bits (704), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 123/195 (63%), Positives = 164/195 (84%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           L LVPMVVEQT+RGER+YDIYSRLLKER++F+ G I+DHMA ++ AQLLFLEA+NP+K+I
Sbjct: 8   LNLVPMVVEQTSRGERAYDIYSRLLKERLIFLVGPIDDHMANVVVAQLLFLEADNPEKDI 67

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGGVVTAGMAIYDTMQ+IKP +ST C+GQAASMG+LLL++G  G R+ALPN+R+
Sbjct: 68  SLYINSPGGVVTAGMAIYDTMQYIKPDVSTICVGQAASMGALLLASGAAGKRYALPNSRV 127

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DI+ HA++I+ ++ RLNE+  K+ G++ E + +  +RD+  SA +A
Sbjct: 128 MIHQPLGGFQGQATDIDIHAREILTLRARLNEVLAKHTGQSLETIARDTERDNFKSAIDA 187

Query: 196 CDWGVVDKVLMSRID 210
             +G+VD+VL  R D
Sbjct: 188 QAYGLVDQVLERRPD 202


>gi|218461999|ref|ZP_03502090.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli Kim
           5]
          Length = 203

 Score =  275 bits (704), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 120/193 (62%), Positives = 160/193 (82%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMV+EQ++RGERS+DIYSRLL+ERI+F+ G++ D ++ L+CAQLLFLEAENP K I+L
Sbjct: 7   LVPMVIEQSSRGERSFDIYSRLLRERIIFLNGEVNDTVSALVCAQLLFLEAENPHKPINL 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G+A+YDTM+FI+ P+ T CMG A SMGS LL AGE G R ALPNA IL+
Sbjct: 67  YINSPGGVVTSGLAMYDTMRFIRAPVHTLCMGTARSMGSFLLMAGEPGGRAALPNASILI 126

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGGF GQASD+  HA++I+K K+R+  +Y ++CG++YE+ E+ +DRD  M+A EA +
Sbjct: 127 HQPSGGFQGQASDMLIHAEEILKTKQRMTRLYAEHCGRSYEDFERGMDRDRFMTAEEALE 186

Query: 198 WGVVDKVLMSRID 210
           WG++D++L  R D
Sbjct: 187 WGLIDRILKVRED 199


>gi|262374981|ref|ZP_06068215.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter
           lwoffii SH145]
 gi|262309994|gb|EEY91123.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter
           lwoffii SH145]
          Length = 201

 Score =  275 bits (704), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 125/192 (65%), Positives = 161/192 (83%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQ++RGERS+DIYSRLL+ER++F+TG++ED+MA LI AQ+LFLEAENP K+I 
Sbjct: 9   ALVPMVVEQSSRGERSFDIYSRLLRERVIFMTGEVEDNMANLIVAQMLFLEAENPDKDIH 68

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGMAIYDTMQFIKP + T+CMGQAASMG+ LL+AG KG R+ L NAR++
Sbjct: 69  LYINSPGGSVTAGMAIYDTMQFIKPDVVTYCMGQAASMGAFLLNAGTKGKRYCLENARVM 128

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+ IK RLN +  ++ G+ YE+V +  DRD+ M+A +A 
Sbjct: 129 IHQPLGGFRGQASDIEIHAREILFIKERLNRLMAEHSGQDYEKVARDTDRDNFMTAQQAK 188

Query: 197 DWGVVDKVLMSR 208
           ++G+VD+VL  R
Sbjct: 189 EYGLVDEVLTKR 200


>gi|213521159|gb|ACJ50516.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           fluorescens]
          Length = 211

 Score =  275 bits (704), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 125/192 (65%), Positives = 159/192 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMVVEQ+ RGER+YDIYSRLLKER++F+ G +ED+MA LICAQLLFLEAENP K+I 
Sbjct: 18  GLVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIH 77

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+ LL+AG +G RF LPN+R++
Sbjct: 78  LYINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGAFLLTAGAEGKRFCLPNSRVM 137

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+ I+ RLN +  K+ G+T EE+E+  +RD+ MSA  A 
Sbjct: 138 IHQPLGGFQGQASDIEIHAKEILFIRERLNTLMAKHSGRTLEEIERDTNRDNFMSAEAAK 197

Query: 197 DWGVVDKVLMSR 208
           ++G++D V+  R
Sbjct: 198 EYGLIDAVIDKR 209


>gi|237747781|ref|ZP_04578261.1| ATP-dependent Clp protease proteolytic subunit [Oxalobacter
           formigenes OXCC13]
 gi|229379143|gb|EEO29234.1| ATP-dependent Clp protease proteolytic subunit [Oxalobacter
           formigenes OXCC13]
          Length = 207

 Score =  275 bits (704), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 126/195 (64%), Positives = 159/195 (81%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
            LG++PMV+EQ+ RGER+YDIYSRLLKERIVF+ G + D  A LI AQLLFLE+ENP K+
Sbjct: 13  MLGMIPMVIEQSGRGERAYDIYSRLLKERIVFLVGPVMDQNANLIVAQLLFLESENPDKD 72

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           ISLYINSPGG V+AGMAIYDTMQFIKP +ST C G AASMG+ LL+AGEKG RF+LPN+R
Sbjct: 73  ISLYINSPGGSVSAGMAIYDTMQFIKPQVSTLCTGLAASMGAFLLAAGEKGKRFSLPNSR 132

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQPSGG  GQA+DIE HA++I+ ++ RLN I   N GK+ E+V +  +RD+ MSA+E
Sbjct: 133 IMIHQPSGGAQGQATDIEIHAREILYLRERLNGILADNTGKSIEQVARDTERDNFMSANE 192

Query: 195 ACDWGVVDKVLMSRI 209
           A D+G++D VL  R+
Sbjct: 193 AKDYGLIDDVLSKRM 207


>gi|87121308|ref|ZP_01077198.1| putative ATP-dependent Clp protease, proteolytic subunit
           [Marinomonas sp. MED121]
 gi|86163465|gb|EAQ64740.1| putative ATP-dependent Clp protease, proteolytic subunit
           [Marinomonas sp. MED121]
          Length = 210

 Score =  275 bits (704), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 124/192 (64%), Positives = 157/192 (81%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+EQT RGERS+DIYSRLLKER++F+ GQ+EDHMA L+ AQLLFLE+ENP K+I 
Sbjct: 17  GLVPMVIEQTARGERSFDIYSRLLKERVIFLVGQVEDHMANLVVAQLLFLESENPDKDIH 76

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQAASMG+LLL+AG  G R+ LPN+R++
Sbjct: 77  LYINSPGGSVTAGMSIYDTMQFIKPDVSTMCIGQAASMGALLLTAGAAGKRYCLPNSRVM 136

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG+ GQASDIE H ++I+ IK RLNEI   + GK  EEV +  DRD+ M  + A 
Sbjct: 137 IHQPLGGYQGQASDIEIHTREILSIKHRLNEIISFHTGKPIEEVAEDTDRDNFMDPTAAK 196

Query: 197 DWGVVDKVLMSR 208
           ++G++D +L+ R
Sbjct: 197 EYGLIDDILLKR 208


>gi|260768947|ref|ZP_05877881.1| ATP-dependent Clp protease proteolytic subunit [Vibrio furnissii
           CIP 102972]
 gi|260616977|gb|EEX42162.1| ATP-dependent Clp protease proteolytic subunit [Vibrio furnissii
           CIP 102972]
 gi|315180643|gb|ADT87557.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           furnissii NCTC 11218]
          Length = 208

 Score =  275 bits (704), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 123/192 (64%), Positives = 156/192 (81%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQT+RGERSYDIYSRLLK+R++F+TGQ+EDHMA L+ AQLLFLE+ENP K+I 
Sbjct: 15  ALVPMVVEQTSRGERSYDIYSRLLKDRVIFLTGQVEDHMANLVVAQLLFLESENPDKDIF 74

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+ LL+ G  G R+ LPN+R++
Sbjct: 75  LYINSPGGSVTAGMSIYDTMQFIKPNVSTLCIGQACSMGAFLLAGGAPGKRYVLPNSRVM 134

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDI+ HAQ+I+ IK +LN +   + G+  E +E+  DRD+ MSA +A 
Sbjct: 135 IHQPLGGFQGQASDIQIHAQEILTIKNKLNRLLADHTGQPLEVIERDTDRDNFMSAQQAV 194

Query: 197 DWGVVDKVLMSR 208
           D+G+VD +L  R
Sbjct: 195 DYGLVDALLTHR 206


>gi|288958758|ref|YP_003449099.1| ATP-dependent Clp protease, protease subunit [Azospirillum sp.
           B510]
 gi|288911066|dbj|BAI72555.1| ATP-dependent Clp protease, protease subunit [Azospirillum sp.
           B510]
          Length = 208

 Score =  275 bits (704), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 126/199 (63%), Positives = 163/199 (81%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           D E     LVPMV+EQTNRGER+YDIYSRLLKERI+F+ G + D +A+LIC+QLLFLE+E
Sbjct: 3   DFEPKMNALVPMVIEQTNRGERAYDIYSRLLKERIIFLIGGVNDAVASLICSQLLFLESE 62

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP K+I+LYINSPGG V+AG+AIYDTMQ+I+P +ST CMGQAASMGSLLL+AG  G RF+
Sbjct: 63  NPNKDIALYINSPGGYVSAGLAIYDTMQYIRPQVSTVCMGQAASMGSLLLAAGAPGKRFS 122

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPN+RI++HQPSGG  GQASDIE  AQ+I+K++ RLN+IYVK+ G+  + +E  ++RD  
Sbjct: 123 LPNSRIMIHQPSGGAQGQASDIEIQAQEILKLRSRLNDIYVKHTGQDLDTIETAMERDKF 182

Query: 190 MSASEACDWGVVDKVLMSR 208
           MS  EA  +G++D+V+  R
Sbjct: 183 MSPEEAKAFGLIDEVVEKR 201


>gi|162148815|ref|YP_001603276.1| ATP-dependent Clp protease proteolytic subunit [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209545437|ref|YP_002277666.1| ATP-dependent Clp protease proteolytic subunit [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787392|emb|CAP56987.1| ATP-dependent Clp protease proteolytic subunit 1 (Endopeptidase Clp
           1) [Gluconacetobacter diazotrophicus PAl 5]
 gi|209533114|gb|ACI53051.1| Endopeptidase Clp [Gluconacetobacter diazotrophicus PAl 5]
          Length = 212

 Score =  275 bits (703), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 126/198 (63%), Positives = 166/198 (83%), Gaps = 1/198 (0%)

Query: 9   KDSEDVFL-GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           +D  ++F   LVPMVVEQT+RGER++DIYSRLL+ERI+F+TG + D +A ++ AQLL+LE
Sbjct: 4   RDPVEIFSSALVPMVVEQTSRGERAFDIYSRLLQERIIFLTGPVYDQVAAVVSAQLLYLE 63

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           + NP KEIS YINSPGGVV+AG+AIYDTMQ+I+ P+ST C+GQAASMGSLLL+ GEKG R
Sbjct: 64  SVNPTKEISFYINSPGGVVSAGLAIYDTMQYIRSPVSTVCIGQAASMGSLLLAGGEKGRR 123

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           FALPNAR+++HQPSGG  GQASDIE  A++I+ I++RLNEIY  + G+T E++E+ L+RD
Sbjct: 124 FALPNARVMVHQPSGGAQGQASDIEIQAREILTIRQRLNEIYETHTGQTLEDIERRLERD 183

Query: 188 HIMSASEACDWGVVDKVL 205
             MSA EA  +G+VD+V+
Sbjct: 184 SYMSAEEAQAFGIVDEVV 201


>gi|78223080|ref|YP_384827.1| ATP-dependent Clp protease proteolytic subunit [Geobacter
           metallireducens GS-15]
 gi|90101408|sp|Q39UH2|CLPP_GEOMG RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|78194335|gb|ABB32102.1| ATP-dependent Clp protease proteolytic subunit ClpP [Geobacter
           metallireducens GS-15]
          Length = 199

 Score =  275 bits (703), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 125/191 (65%), Positives = 159/191 (83%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+VVEQT RGERSYDIYSRLLK+RI+F+ G I+DH+A L+ AQLLFLEAE+P K+I L
Sbjct: 2   LVPIVVEQTGRGERSYDIYSRLLKDRIIFLGGPIDDHVANLVIAQLLFLEAEDPDKDIHL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVTAGMAIYDTMQ+IK P+ST C+GQAASMG+LLLS GEKG RF+L ++RI++
Sbjct: 62  YINSPGGVVTAGMAIYDTMQYIKAPVSTICVGQAASMGALLLSGGEKGKRFSLTHSRIMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQA+DI  HAQ+I+K+K+RLNEI  +N G+  E+VE   +RD+ MS  EA  
Sbjct: 122 HQPLGGFQGQATDIHIHAQEILKMKKRLNEIIAENSGQALEKVEADTERDYFMSGEEAKS 181

Query: 198 WGVVDKVLMSR 208
           +G++D ++  +
Sbjct: 182 YGIIDAIIARK 192


>gi|21241838|ref|NP_641420.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
           axonopodis pv. citri str. 306]
 gi|58580656|ref|YP_199672.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas oryzae
           pv. oryzae KACC10331]
 gi|78046637|ref|YP_362812.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|84622589|ref|YP_449961.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas oryzae
           pv. oryzae MAFF 311018]
 gi|166710928|ref|ZP_02242135.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas oryzae
           pv. oryzicola BLS256]
 gi|188578371|ref|YP_001915300.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas oryzae
           pv. oryzae PXO99A]
 gi|188992776|ref|YP_001904786.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
           campestris pv. campestris str. B100]
 gi|289664185|ref|ZP_06485766.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
           campestris pv. vasculorum NCPPB702]
 gi|289668776|ref|ZP_06489851.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
           campestris pv. musacearum NCPPB4381]
 gi|294666562|ref|ZP_06731803.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|325914926|ref|ZP_08177258.1| ATP-dependent Clp protease proteolytic subunit ClpP [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325927441|ref|ZP_08188688.1| ATP-dependent Clp protease proteolytic subunit ClpP [Xanthomonas
           perforans 91-118]
 gi|25008307|sp|Q8PNI5|CLPP_XANAC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|67460159|sp|Q5H434|CLPP_XANOR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|90183187|sp|Q3BWQ1|CLPP_XANC5 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|110816521|sp|Q2P6Z0|CLPP_XANOM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706557|sp|B0RTF7|CLPP_XANCB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706558|sp|B2SMI3|CLPP_XANOP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|21107218|gb|AAM35956.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
           axonopodis pv. citri str. 306]
 gi|58425250|gb|AAW74287.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas oryzae
           pv. oryzae KACC10331]
 gi|78035067|emb|CAJ22712.1| ATP-dependent Clp protease [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|84366529|dbj|BAE67687.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas oryzae
           pv. oryzae MAFF 311018]
 gi|167734536|emb|CAP52746.1| ATP-dependent Clp protease [Xanthomonas campestris pv. campestris]
 gi|188522823|gb|ACD60768.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Xanthomonas
           oryzae pv. oryzae PXO99A]
 gi|292603706|gb|EFF47116.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|325538819|gb|EGD10483.1| ATP-dependent Clp protease proteolytic subunit ClpP [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325542191|gb|EGD13686.1| ATP-dependent Clp protease proteolytic subunit ClpP [Xanthomonas
           perforans 91-118]
          Length = 208

 Score =  275 bits (703), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 123/193 (63%), Positives = 163/193 (84%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           L LVPMVVEQT+RGER+YDIYSRLLKER++F+ G I+DHMA +I AQLLFLEA+NP+K+I
Sbjct: 8   LNLVPMVVEQTSRGERAYDIYSRLLKERLIFLVGPIDDHMANVIVAQLLFLEADNPEKDI 67

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGGVVTAGMAIYDTMQ+IKP +ST C+GQAASMG+LLL++G  G R+ALPN+R+
Sbjct: 68  SIYINSPGGVVTAGMAIYDTMQYIKPDVSTICVGQAASMGALLLASGAAGKRYALPNSRV 127

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DI+ HA++I+ ++ RLNEI  K+ G++ E + +  +RD+  SA +A
Sbjct: 128 MIHQPLGGFQGQATDIDIHAREILTLRSRLNEILAKHTGQSLETIARDTERDNFKSAVDA 187

Query: 196 CDWGVVDKVLMSR 208
             +G+VD+VL  R
Sbjct: 188 QAYGLVDQVLERR 200


>gi|289804604|ref|ZP_06535233.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 228

 Score =  275 bits (702), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 123/194 (63%), Positives = 163/194 (84%), Gaps = 2/194 (1%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D+    + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 37  MSYSG--ERDNLAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIV 94

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 95  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 154

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+   + G++ E++
Sbjct: 155 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQI 214

Query: 181 EKTLDRDHIMSASE 194
           E+  +RD  +SA E
Sbjct: 215 ERDTERDRFLSAPE 228


>gi|90417350|ref|ZP_01225275.1| ATP-dependent Clp protease, proteolytic subunit ClpP [marine gamma
           proteobacterium HTCC2207]
 gi|90330792|gb|EAS46061.1| ATP-dependent Clp protease, proteolytic subunit ClpP [marine gamma
           proteobacterium HTCC2207]
          Length = 213

 Score =  275 bits (702), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 129/209 (61%), Positives = 166/209 (79%), Gaps = 1/209 (0%)

Query: 1   MSFEGCAKKDSEDV-FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLI 59
           M+F+      + DV   GLVPMVVEQT+RGER+YDIYSRLLKER++F+ GQ+EDHMA LI
Sbjct: 1   MNFQQPYAGHTHDVQASGLVPMVVEQTSRGERAYDIYSRLLKERVIFLVGQVEDHMANLI 60

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
            AQ+LFLE+ENP K+I LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQAASMG+ LL
Sbjct: 61  VAQMLFLESENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPNVSTMCIGQAASMGAFLL 120

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
           +AG +G R+ LPN+R ++HQPSGG  GQA+DI   +Q+I+KIK RLN +  K+ G++ E+
Sbjct: 121 AAGAEGKRYCLPNSRTMIHQPSGGAQGQATDIHIQSQEILKIKSRLNNLMAKHTGQSVEK 180

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           V +  +RD+ MSA E+  +G+VD VL SR
Sbjct: 181 VTEDTERDNFMSAEESKAYGLVDDVLDSR 209


>gi|127513436|ref|YP_001094633.1| ATP-dependent Clp protease proteolytic subunit [Shewanella loihica
           PV-4]
 gi|171855248|sp|A3QFX6|CLPP_SHELP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|126638731|gb|ABO24374.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella
           loihica PV-4]
          Length = 203

 Score =  275 bits (702), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 127/197 (64%), Positives = 158/197 (80%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E V   LVPMVVEQT +GERSYDIYSRLLKER++F+ GQ+E+HMA LI AQLLFLE+E+P
Sbjct: 6   ESVLNALVPMVVEQTAKGERSYDIYSRLLKERVIFLVGQVEEHMANLIVAQLLFLESESP 65

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+I LYINSPGG VTAGMAIYDTMQFIKP +ST C+GQAASMG+ LL+ G KG R  LP
Sbjct: 66  DKDIYLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFLLAGGAKGKRHCLP 125

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+R+++HQP GGF GQASDI  HAQ+I+ IK +LN++   + G+  E +E+  DRD+ MS
Sbjct: 126 NSRVMIHQPLGGFQGQASDIAIHAQEILGIKNKLNQMLADHTGQPLEVIERDTDRDNFMS 185

Query: 192 ASEACDWGVVDKVLMSR 208
           A+EA ++G+VD VL  R
Sbjct: 186 ATEAAEYGLVDSVLDKR 202


>gi|117921102|ref|YP_870294.1| ATP-dependent Clp protease proteolytic subunit [Shewanella sp.
           ANA-3]
 gi|166214711|sp|A0KYL9|CLPP_SHESA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|117613434|gb|ABK48888.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella sp.
           ANA-3]
          Length = 202

 Score =  275 bits (702), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 125/199 (62%), Positives = 162/199 (81%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           ++ D+   LVPMV+EQT +GERS+DIYSRLLKERI+F+ GQ+E+HMA LI AQLLFLE+E
Sbjct: 3   NASDIQSALVPMVIEQTAKGERSFDIYSRLLKERIIFLVGQVEEHMANLIVAQLLFLESE 62

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           +P K+I LYINSPGG VTAGMAIYDTMQFIKP +ST C+GQAASMG+ LL+ GEKG RF 
Sbjct: 63  SPDKDIFLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFLLAGGEKGKRFC 122

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPN+R+++HQP GGF GQASDI  HAQ+I+ IK +LN +  ++ G+  E +E+  DRD+ 
Sbjct: 123 LPNSRVMIHQPLGGFQGQASDIAIHAQEILGIKHKLNLMLSEHTGQPLEVIERDTDRDNF 182

Query: 190 MSASEACDWGVVDKVLMSR 208
           MSA++A ++G+VD V+  R
Sbjct: 183 MSATQAVEYGLVDAVMTKR 201


>gi|308050308|ref|YP_003913874.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ferrimonas
           balearica DSM 9799]
 gi|307632498|gb|ADN76800.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ferrimonas
           balearica DSM 9799]
          Length = 207

 Score =  275 bits (702), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 124/192 (64%), Positives = 156/192 (81%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            L+PMVVEQT +GERSYDIYSRLLKER++F+TG +EDHMA L+ AQLLFLE+ENP K+I 
Sbjct: 11  ALIPMVVEQTAKGERSYDIYSRLLKERVIFLTGPVEDHMANLVVAQLLFLESENPDKDIY 70

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+ G KG R  LPN+R++
Sbjct: 71  LYINSPGGSVTAGMSIYDTMQFIKPDVSTVCMGQAASMGAFLLAGGAKGKRHVLPNSRVM 130

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDI  HAQ+I+ IK +LN +  ++ G+  E +E+  DRD+ MSA++A 
Sbjct: 131 IHQPLGGFQGQASDIAIHAQEILGIKHKLNLLLAEHTGQPMEVIERDTDRDNFMSATDAV 190

Query: 197 DWGVVDKVLMSR 208
           ++G+VD VL  R
Sbjct: 191 EYGLVDSVLTRR 202


>gi|126173838|ref|YP_001049987.1| ATP-dependent Clp protease proteolytic subunit [Shewanella baltica
           OS155]
 gi|153000122|ref|YP_001365803.1| ATP-dependent Clp protease proteolytic subunit [Shewanella baltica
           OS185]
 gi|160874744|ref|YP_001554060.1| ATP-dependent Clp protease proteolytic subunit [Shewanella baltica
           OS195]
 gi|217973910|ref|YP_002358661.1| ATP-dependent Clp protease proteolytic subunit [Shewanella baltica
           OS223]
 gi|304409711|ref|ZP_07391331.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
           baltica OS183]
 gi|307304067|ref|ZP_07583820.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
           baltica BA175]
 gi|166214708|sp|A3D305|CLPP_SHEB5 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166214709|sp|A6WLQ1|CLPP_SHEB8 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|189082464|sp|A9KWH7|CLPP_SHEB9 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|254763799|sp|B8E5E9|CLPP_SHEB2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|125997043|gb|ABN61118.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella
           baltica OS155]
 gi|151364740|gb|ABS07740.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
           baltica OS185]
 gi|160860266|gb|ABX48800.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
           baltica OS195]
 gi|217499045|gb|ACK47238.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
           baltica OS223]
 gi|304352229|gb|EFM16627.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
           baltica OS183]
 gi|306912965|gb|EFN43388.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
           baltica BA175]
 gi|315266986|gb|ADT93839.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
           baltica OS678]
          Length = 202

 Score =  275 bits (702), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 125/199 (62%), Positives = 162/199 (81%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           ++ D+   LVPMV+EQT +GERSYDIYSRLLKERI+F+ GQ+E+HMA LI AQLLFLE+E
Sbjct: 3   NASDIQSALVPMVIEQTAKGERSYDIYSRLLKERIIFLVGQVEEHMANLIVAQLLFLESE 62

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           +P K+I LYINSPGG VTAGMAIYDTMQFIKP +ST C+GQAASMG+ LL+ GEKG R  
Sbjct: 63  SPDKDIFLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFLLAGGEKGKRHC 122

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPN+R+++HQP GGF GQASDI  HA++I+ IK +LN++  ++ G+  E VE+  DRD+ 
Sbjct: 123 LPNSRVMIHQPLGGFQGQASDIAIHAKEILGIKNKLNQMLAEHTGQPLEVVERDTDRDNF 182

Query: 190 MSASEACDWGVVDKVLMSR 208
           MSA++A ++G+VD V+  R
Sbjct: 183 MSATQAVEYGLVDSVMTKR 201


>gi|51473702|ref|YP_067459.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia typhi
           str. Wilmington]
 gi|60389549|sp|Q68WL5|CLPP_RICTY RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|51460014|gb|AAU03977.1| Caseinolytic protease [Rickettsia typhi str. Wilmington]
          Length = 201

 Score =  275 bits (702), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 122/193 (63%), Positives = 162/193 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P+V+EQT+RGER+YDIYSRLLKERI+FV   +EDHMA LI AQLLFLEAENP+K+I
Sbjct: 1   MSYIPVVIEQTSRGERAYDIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAENPKKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG+AIYDTMQFIKP ++T C+GQA SMGSLLL  GE GMR++LP++RI
Sbjct: 61  YMYINSPGGVVTAGLAIYDTMQFIKPKVATLCIGQACSMGSLLLCGGEHGMRYSLPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG+ GQA+DIE HA++ +KIK+ LNE+Y K+  +  + +EK+++RD+ MS  EA
Sbjct: 121 MIHQPSGGYKGQATDIEIHARETLKIKKLLNELYSKHTEQALKHIEKSMERDNFMSPGEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD ++ SR
Sbjct: 181 KKFGLVDNIISSR 193


>gi|84499432|ref|ZP_00997720.1| Protease subunit of ATP-dependent Clp protease [Oceanicola
           batsensis HTCC2597]
 gi|84392576|gb|EAQ04787.1| Protease subunit of ATP-dependent Clp protease [Oceanicola
           batsensis HTCC2597]
          Length = 210

 Score =  275 bits (702), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 125/197 (63%), Positives = 161/197 (81%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E+    LVPMVVEQT+RGER+YDI+SRLLKERI+FV+G + D M++LI AQLL LEAENP
Sbjct: 6   ENYMNNLVPMVVEQTSRGERAYDIFSRLLKERIIFVSGPVHDGMSSLIVAQLLHLEAENP 65

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+IS+YINSPGGVVT+G++IYDTMQ+IKP + T  +GQAASMGSLLL+ G  GMR+ALP
Sbjct: 66  TKDISMYINSPGGVVTSGLSIYDTMQYIKPKVGTLVIGQAASMGSLLLAGGAAGMRYALP 125

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           NA I++HQPSGG+ GQA+DI  HA+   K+K RLN+IYVK+ G+ +E V   L+RD+ M+
Sbjct: 126 NAEIMVHQPSGGYRGQATDIMIHARHTEKLKERLNKIYVKHTGQDFETVVDALERDNFMT 185

Query: 192 ASEACDWGVVDKVLMSR 208
           A EA DWG++D++  SR
Sbjct: 186 AEEAKDWGLIDEIFESR 202


>gi|114563762|ref|YP_751275.1| ATP-dependent Clp protease proteolytic subunit [Shewanella
           frigidimarina NCIMB 400]
 gi|122299288|sp|Q07ZX8|CLPP_SHEFN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|114335055|gb|ABI72437.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella
           frigidimarina NCIMB 400]
          Length = 203

 Score =  274 bits (701), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 125/197 (63%), Positives = 160/197 (81%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E V   LVPMVVEQT +GERSYDIYSRLLKER++F+ GQ+E+HMA LI AQLLFLE+E+P
Sbjct: 6   ESVLNALVPMVVEQTAKGERSYDIYSRLLKERVIFLVGQVEEHMANLIVAQLLFLESESP 65

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+I LYINSPGG VTAGMAIYDTMQFIKP +ST CMGQAASMG+ LL+ G KG R  LP
Sbjct: 66  DKDIYLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCMGQAASMGAFLLAGGAKGKRHCLP 125

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+R+++HQP GGF GQASDI  HA++I+ IK +LN++  ++ G+  + +E+  DRD+ MS
Sbjct: 126 NSRVMIHQPLGGFQGQASDIAIHAKEILGIKNKLNQMLAEHTGQPLDIIERDTDRDNFMS 185

Query: 192 ASEACDWGVVDKVLMSR 208
           A++A ++G+VD +L SR
Sbjct: 186 ATQAVEYGIVDSLLTSR 202


>gi|94498801|ref|ZP_01305347.1| ATP-dependent Clp protease [Sphingomonas sp. SKA58]
 gi|94421730|gb|EAT06785.1| ATP-dependent Clp protease [Sphingomonas sp. SKA58]
          Length = 211

 Score =  274 bits (701), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 125/196 (63%), Positives = 163/196 (83%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
           D    LVP+V+EQ+NRGERS+DI+SRLL+ERI+FVTGQ+EDHMA+LI AQLLFLE+ENP+
Sbjct: 7   DPMAALVPIVIEQSNRGERSFDIFSRLLRERIIFVTGQVEDHMASLIVAQLLFLESENPK 66

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K+I +YINSPGGVVT+GMAI+DTM++I+P + T C+GQAASMGS LL+AGE G R AL N
Sbjct: 67  KDIWMYINSPGGVVTSGMAIHDTMKYIRPQVGTVCIGQAASMGSFLLAAGEPGKRIALSN 126

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           ARI++HQPSGG  G ASDIE  A++I++I+RRLN++YV+  G+T E VE+ +DRD  + A
Sbjct: 127 ARIMVHQPSGGAQGMASDIEIQAKEILRIRRRLNDLYVQYTGQTLEAVERAMDRDTFLEA 186

Query: 193 SEACDWGVVDKVLMSR 208
            EA  +G+VD+V   R
Sbjct: 187 DEAKAFGLVDEVFDRR 202


>gi|113970830|ref|YP_734623.1| ATP-dependent Clp protease proteolytic subunit [Shewanella sp.
           MR-4]
 gi|123029527|sp|Q0HHA1|CLPP_SHESM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|113885514|gb|ABI39566.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella sp.
           MR-4]
          Length = 202

 Score =  274 bits (701), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 125/199 (62%), Positives = 162/199 (81%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           ++ D+   LVPMV+EQT +GERS+DIYSRLLKERI+F+ GQ+E+HMA LI AQLLFLE+E
Sbjct: 3   NASDIQSALVPMVIEQTAKGERSFDIYSRLLKERIIFLVGQVEEHMANLIVAQLLFLESE 62

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           +P K+I LYINSPGG VTAGMAIYDTMQFIKP +ST C+GQAASMG+ LL+ GEKG RF 
Sbjct: 63  SPDKDIFLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFLLAGGEKGKRFC 122

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPN+R+++HQP GGF GQASDI  HAQ+I+ IK +LN +  ++ G+  E +E+  DRD+ 
Sbjct: 123 LPNSRVMIHQPLGGFQGQASDIAIHAQEILGIKHKLNLMLSEHTGQPLELIERDTDRDNF 182

Query: 190 MSASEACDWGVVDKVLMSR 208
           MSA++A ++G+VD V+  R
Sbjct: 183 MSATQAVEYGLVDAVMTKR 201


>gi|58584810|ref|YP_198383.1| protease subunit of ATP-dependent Clp protease [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
 gi|67460156|sp|Q5GS83|CLPP_WOLTR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|58419126|gb|AAW71141.1| Protease subunit of ATP-dependent Clp protease [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
          Length = 208

 Score =  274 bits (701), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 120/197 (60%), Positives = 168/197 (85%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P+V+EQT+RGER+YDIYSRL+KERI+FVTG +ED+MA++I AQLLFLE+ENP K+I
Sbjct: 1   MTLIPIVIEQTSRGERAYDIYSRLVKERIIFVTGPVEDNMASVIVAQLLFLESENPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG++IYDTMQ+IKP +ST C+GQAASMGSLLL+AG +G R++LP++RI
Sbjct: 61  YMYINSPGGVVTAGLSIYDTMQYIKPDVSTLCIGQAASMGSLLLAAGTEGKRYSLPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG+ GQA+DIE HA +I+++KR+LN+IY K+ G + +++E  ++RD  M   EA
Sbjct: 121 MIHQPSGGYQGQATDIEIHANEILRVKRKLNQIYEKHTGNSLKKIEGMMERDKFMDPEEA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
              G++D+V+  R DI+
Sbjct: 181 RRIGLIDRVIAERKDIK 197


>gi|296284617|ref|ZP_06862615.1| ATP-dependent Clp protease proteolytic subunit [Citromicrobium
           bathyomarinum JL354]
          Length = 228

 Score =  274 bits (701), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 127/191 (66%), Positives = 160/191 (83%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+VVEQT+RGERS+DI+SRLL+ERIVF+TG +ED MA+L  AQLLFLE+ENP K IS+
Sbjct: 17  LVPVVVEQTSRGERSFDIFSRLLRERIVFLTGPVEDGMASLAVAQLLFLESENPSKPISM 76

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVTAGMAI+DTMQ+I+P IST C+GQAASMGS LL+AGE GMR ALPNARI++
Sbjct: 77  YINSPGGVVTAGMAIHDTMQYIQPRISTVCVGQAASMGSFLLAAGEPGMRIALPNARIMI 136

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  G ASDIE  A++I++I++ +NE+Y K  G+  E++E+ +DRD  + A EA  
Sbjct: 137 HQPSGGAQGMASDIEIQAREILRIRKNMNELYAKYTGQPLEKIEEAMDRDTFLDAQEAMK 196

Query: 198 WGVVDKVLMSR 208
           +G+VDKV  SR
Sbjct: 197 FGLVDKVFESR 207


>gi|121605848|ref|YP_983177.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Polaromonas
           naphthalenivorans CJ2]
 gi|120594817|gb|ABM38256.1| ATP-dependent Clp protease proteolytic subunit ClpP [Polaromonas
           naphthalenivorans CJ2]
          Length = 216

 Score =  274 bits (701), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 124/193 (64%), Positives = 156/193 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG+VPMV+EQ+ RGERSYDIYSRLLKER++F+ G + D  A L+ AQLLFLE+ENP K+I
Sbjct: 23  LGMVPMVIEQSGRGERSYDIYSRLLKERVIFLVGPVNDQTANLVVAQLLFLESENPDKDI 82

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S YINSPGG VTAGMAIYDTMQFIKP +ST C+G AASMG+ LLS+G KG RF+LPN+R+
Sbjct: 83  SFYINSPGGSVTAGMAIYDTMQFIKPDVSTLCVGMAASMGAFLLSSGTKGKRFSLPNSRV 142

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQASDIE HA+DI+K + +LN I   N G+T E++E+  +RD+ M A EA
Sbjct: 143 MIHQPSGGAQGQASDIEIHARDILKTRDQLNRILAHNTGQTVEKIERDTERDYFMFADEA 202

Query: 196 CDWGVVDKVLMSR 208
             +GVVD+V+  R
Sbjct: 203 KAYGVVDQVISKR 215


>gi|209546440|ref|YP_002278330.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209539297|gb|ACI59230.1| Endopeptidase Clp [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 203

 Score =  274 bits (701), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 118/191 (61%), Positives = 160/191 (83%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQ++RGERS+DIYSRLL+ERIVF+ G++ D ++ L+CAQLLFLEAENP+K I L
Sbjct: 7   LVPMVVEQSSRGERSFDIYSRLLRERIVFLNGEVNDTVSALVCAQLLFLEAENPKKPIYL 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G+A+YDTM++I+ P+ T CMG A SMGS LL AGE G R ALPNA IL+
Sbjct: 67  YINSPGGVVTSGLAMYDTMRYIRAPVHTLCMGTARSMGSFLLMAGEPGERAALPNASILI 126

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGGF GQA+D++ HA++I+K K+R+  +Y ++CG++YE+ E+ +DRD  M++ EA +
Sbjct: 127 HQPSGGFQGQATDMQIHAEEILKTKQRMTRLYAEHCGRSYEDFERAMDRDRFMTSQEALE 186

Query: 198 WGVVDKVLMSR 208
           WG++DK++  R
Sbjct: 187 WGLIDKIMQLR 197


>gi|256556952|gb|ACU83574.1| ATP-dependent Clp protease subunit [uncultured bacterium
           HF130_AEPn_2]
          Length = 211

 Score =  274 bits (701), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 125/192 (65%), Positives = 158/192 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMVVEQ+ RGER+YDIYSRLLKER++F+ G +ED+MA LICAQLLFLEAENP K+I 
Sbjct: 18  GLVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIH 77

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+ LL+AG +G RF LPN+R++
Sbjct: 78  LYINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGAFLLTAGAEGKRFCLPNSRVM 137

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+ I+ RLN +  K+ G T EE+E+  +RD+ MSA  A 
Sbjct: 138 IHQPLGGFQGQASDIEIHAKEILFIRERLNTLMAKHSGHTLEEIERDTNRDNFMSAEAAR 197

Query: 197 DWGVVDKVLMSR 208
           ++G++D V+  R
Sbjct: 198 EYGLIDAVIDKR 209


>gi|103488219|ref|YP_617780.1| ATP-dependent Clp protease proteolytic subunit [Sphingopyxis
           alaskensis RB2256]
 gi|116243167|sp|Q1GPH5|CLPP_SPHAL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|98978296|gb|ABF54447.1| ATP-dependent Clp protease proteolytic subunit ClpP [Sphingopyxis
           alaskensis RB2256]
          Length = 216

 Score =  274 bits (700), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 125/196 (63%), Positives = 165/196 (84%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
           D    LVP+VVEQT+RGERS+DI+SRLL+ERIVFVTG++ED+MA+LI AQLLFLE+ENP+
Sbjct: 3   DPLAALVPVVVEQTSRGERSFDIFSRLLRERIVFVTGEVEDNMASLIVAQLLFLESENPK 62

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K+I +YINSPGGVVTAGMAI+DTMQ+I+P + T C+GQAASMGS LL+AGE GMR AL N
Sbjct: 63  KDIYMYINSPGGVVTAGMAIHDTMQYIRPRVGTVCIGQAASMGSFLLAAGEPGMRVALTN 122

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           AR+++HQPSGG  G ASDIE  A++I++I++R+N++YVK  GK+ +++EK +DRD  + A
Sbjct: 123 ARVMVHQPSGGARGMASDIEIQAKEILRIRKRMNDLYVKYTGKSLKDIEKAMDRDTFLEA 182

Query: 193 SEACDWGVVDKVLMSR 208
            EA ++G+VD V   R
Sbjct: 183 DEAKEFGIVDHVYDRR 198


>gi|21230439|ref|NP_636356.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|66769567|ref|YP_244329.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
           campestris pv. campestris str. 8004]
 gi|25008306|sp|Q8PBY6|CLPP_XANCP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|81304478|sp|Q4URL4|CLPP_XANC8 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|21112001|gb|AAM40280.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|66574899|gb|AAY50309.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
           campestris pv. campestris str. 8004]
          Length = 208

 Score =  274 bits (700), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 123/193 (63%), Positives = 162/193 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           L LVPMVVEQT+RGER+YDIYSRLLKER++F+ G I+DHMA +I AQLLFLEA+NP+K+I
Sbjct: 8   LNLVPMVVEQTSRGERAYDIYSRLLKERLIFLVGPIDDHMANVIVAQLLFLEADNPEKDI 67

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGGVVTAGMAIYDTMQ+IKP +ST C+GQAASMG+LLL++G  G R+ALPN+R+
Sbjct: 68  SIYINSPGGVVTAGMAIYDTMQYIKPDVSTICVGQAASMGALLLASGAAGKRYALPNSRV 127

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DI+ HA++I+ ++ RLNEI  K+ G++ E + +  +RD+  SA +A
Sbjct: 128 MIHQPLGGFQGQATDIDIHAREILTLRSRLNEILAKHTGQSLETIARDTERDNFKSAVDA 187

Query: 196 CDWGVVDKVLMSR 208
             +G+VD VL  R
Sbjct: 188 QAYGLVDHVLERR 200


>gi|58038575|ref|YP_190539.1| ATP-dependent Clp protease proteolytic subunit [Gluconobacter
           oxydans 621H]
 gi|67460438|sp|Q5FUR3|CLPP1_GLUOX RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|58000989|gb|AAW59883.1| ATP-dependent Clp protease proteolytic subunit [Gluconobacter
           oxydans 621H]
          Length = 215

 Score =  274 bits (700), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 127/198 (64%), Positives = 170/198 (85%), Gaps = 1/198 (0%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           +D  +VF   LVPMVVEQT RGERS+DI+SRLL+ERI+F+TG + D +++LICAQLL+LE
Sbjct: 6   RDPLEVFSNSLVPMVVEQTARGERSFDIFSRLLQERIIFLTGPVYDQVSSLICAQLLYLE 65

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           + NP KEIS YINSPGGVV+AG+AIYDTMQ+I+ P+ST C+GQAASMGSLLL+ GEKG R
Sbjct: 66  SVNPTKEISFYINSPGGVVSAGLAIYDTMQYIRCPVSTVCIGQAASMGSLLLAGGEKGHR 125

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           +ALPNAR+++HQPSGG  GQASDIE  A++I+ I++RLNEIY ++ G+T E++E+ L+RD
Sbjct: 126 YALPNARVMVHQPSGGAQGQASDIEIQAREILIIRQRLNEIYREHTGQTLEQIEQKLERD 185

Query: 188 HIMSASEACDWGVVDKVL 205
             +SA+EA ++G++DKV+
Sbjct: 186 SYLSANEAREFGLIDKVV 203


>gi|84686590|ref|ZP_01014483.1| Protease subunit of ATP-dependent Clp protease [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84665503|gb|EAQ11980.1| Protease subunit of ATP-dependent Clp protease [Rhodobacterales
           bacterium HTCC2654]
          Length = 193

 Score =  274 bits (700), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 124/193 (64%), Positives = 160/193 (82%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MVVEQT+RGER+YDI+SRLLKERI+F+ G + D M++LICAQLLFLEAENP KEI++YIN
Sbjct: 1   MVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMSSLICAQLLFLEAENPSKEIAMYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGGVVT+G++IYDTMQ+I+P +ST  +GQAASMGSLLL+AG  GMRF+LPN+RI++HQP
Sbjct: 61  SPGGVVTSGLSIYDTMQYIRPKVSTLVIGQAASMGSLLLTAGAPGMRFSLPNSRIMVHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
           SGG+ GQA+DI  HAQ+  K+K RLN IYVK+ G+  + V   L+RD+ M   +A DWG+
Sbjct: 121 SGGYQGQATDIMIHAQETQKLKDRLNSIYVKHTGQKLKAVVDALERDNFMDPEQAKDWGL 180

Query: 201 VDKVLMSRIDIEE 213
           +D++L SR D  E
Sbjct: 181 IDEILESRGDAPE 193


>gi|330808572|ref|YP_004353034.1| endopeptidase Clp (ATP-dependent Clp protease proteolytic subunit
           ClpP) [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327376680|gb|AEA68030.1| endopeptidase Clp (ATP-dependent Clp protease proteolytic subunit
           ClpP) [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 211

 Score =  274 bits (700), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 123/192 (64%), Positives = 159/192 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+EQ+ RGER+YDIYSRLLKER++F+ G +ED+MA LICAQLLFLEAENP K+I 
Sbjct: 18  GLVPMVIEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIH 77

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+ LL+AG  G R+ LPN+R++
Sbjct: 78  LYINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGAFLLTAGAHGKRYCLPNSRVM 137

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+ I+ RLN +  K+ G+T EE+E+  +RD+ MSA  A 
Sbjct: 138 IHQPLGGFQGQASDIEIHAKEILFIRERLNTLMAKHSGRTLEEIERDTNRDNFMSAEAAR 197

Query: 197 DWGVVDKVLMSR 208
           ++G++D+V+  R
Sbjct: 198 EYGLIDEVINQR 209


>gi|218510664|ref|ZP_03508542.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli
           Brasil 5]
 gi|327192437|gb|EGE59394.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli
           CNPAF512]
          Length = 203

 Score =  274 bits (700), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 120/193 (62%), Positives = 159/193 (82%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMV+EQ++RGERS+DIYSRLL+ERI+F+ G++ D ++ L+CAQLLFLEAENP K I+L
Sbjct: 7   LVPMVIEQSSRGERSFDIYSRLLRERIIFLNGEVNDTVSALVCAQLLFLEAENPNKPINL 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G+A+YDTM+FI+ P+ T CMG A SMGS LL AGE G R ALPNA IL+
Sbjct: 67  YINSPGGVVTSGLAMYDTMRFIRAPVHTLCMGTARSMGSFLLMAGEPGGRAALPNASILI 126

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGGF GQASD+  HA++I+K K+R+  +Y ++CG++YE+ E  +DRD  M+A EA +
Sbjct: 127 HQPSGGFQGQASDMLIHAEEILKTKQRMTRLYAEHCGRSYEDFEHGMDRDRFMTAEEALE 186

Query: 198 WGVVDKVLMSRID 210
           WG++D++L  R D
Sbjct: 187 WGLIDRILKVRED 199


>gi|167624686|ref|YP_001674980.1| ATP-dependent Clp protease proteolytic subunit [Shewanella
           halifaxensis HAW-EB4]
 gi|189082465|sp|B0TLU9|CLPP_SHEHH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|167354708|gb|ABZ77321.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
           halifaxensis HAW-EB4]
          Length = 203

 Score =  274 bits (700), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 126/200 (63%), Positives = 159/200 (79%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           K  E V   LVPMVVEQT +GERSYDIYSRLLKER++F+ GQ+E+HMA LI AQLLFLE+
Sbjct: 3   KAPESVLNALVPMVVEQTAKGERSYDIYSRLLKERVIFLVGQVEEHMANLIVAQLLFLES 62

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           E+P K+I LYINSPGG VTAGMAIYDTMQFIKP +ST C+GQAASMG+ LL+ G +G R 
Sbjct: 63  ESPDKDIYLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFLLAGGAEGKRH 122

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
            LPN+R+++HQP GGF GQASDI  HAQ+I+ IK +LN +  ++ G+  E +E+  DRD+
Sbjct: 123 CLPNSRVMIHQPLGGFQGQASDIAIHAQEILGIKNKLNTMLAEHTGQPLEVIERDTDRDN 182

Query: 189 IMSASEACDWGVVDKVLMSR 208
            MSA+EA ++G+VD V+  R
Sbjct: 183 FMSATEAAEYGLVDSVIAKR 202


>gi|39996891|ref|NP_952842.1| ATP-dependent Clp protease proteolytic subunit [Geobacter
           sulfurreducens PCA]
 gi|60389697|sp|Q74C82|CLPP_GEOSL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|39983779|gb|AAR35169.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacter
           sulfurreducens PCA]
 gi|298505904|gb|ADI84627.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacter
           sulfurreducens KN400]
          Length = 199

 Score =  274 bits (700), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 122/188 (64%), Positives = 159/188 (84%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+VVEQT RGERSYDIYSRLLK+RI+F+ G ++DH+A L+ AQ+LFLEAE+P K+I L
Sbjct: 2   LVPIVVEQTGRGERSYDIYSRLLKDRIIFLGGPVDDHVANLVIAQMLFLEAEDPDKDIHL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+GMAIYDTMQ+IK P+ST C+GQAASMG+LLLS GEKG RF+L ++RI++
Sbjct: 62  YINSPGGVVTSGMAIYDTMQYIKAPVSTICVGQAASMGALLLSGGEKGKRFSLKHSRIMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQA+DI  HAQ+I+K+K+RLNEI  +N G+   +VE   +RD+ MS +EA D
Sbjct: 122 HQPLGGFQGQATDIHIHAQEILKLKKRLNEILAENTGQQLAKVEADTERDYFMSGAEAKD 181

Query: 198 WGVVDKVL 205
           +G++D ++
Sbjct: 182 YGIIDNII 189


>gi|294011932|ref|YP_003545392.1| ATP-dependent Clp protease protease subunit [Sphingobium japonicum
           UT26S]
 gi|292675262|dbj|BAI96780.1| ATP-dependent Clp protease protease subunit [Sphingobium japonicum
           UT26S]
          Length = 211

 Score =  274 bits (700), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 125/196 (63%), Positives = 162/196 (82%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
           D    LVP+V+EQ+NRGERS+DIYSRLL+ERI+FVTGQ+EDHMA+LI AQLLFLE+ENP+
Sbjct: 7   DPMAALVPIVIEQSNRGERSFDIYSRLLRERIIFVTGQVEDHMASLIVAQLLFLESENPK 66

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K+I +YINSPGGVVT+GMAI+DTM++I+P + T C+GQAASMGS LL+AGE G R AL N
Sbjct: 67  KDIWMYINSPGGVVTSGMAIHDTMKYIRPQVGTVCIGQAASMGSFLLAAGEPGKRIALSN 126

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           ARI++HQPSGG  G ASDIE  A++I++I+ RLN +YV+  G++ EEVE+ +DRD  + A
Sbjct: 127 ARIMVHQPSGGAQGMASDIEIQAKEILRIRSRLNNLYVQYTGRSLEEVERAMDRDTFLEA 186

Query: 193 SEACDWGVVDKVLMSR 208
            EA  +G+VD+V   R
Sbjct: 187 EEAKAFGLVDEVFDRR 202


>gi|157962502|ref|YP_001502536.1| ATP-dependent Clp protease proteolytic subunit [Shewanella pealeana
           ATCC 700345]
 gi|189082466|sp|A8H614|CLPP_SHEPA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|157847502|gb|ABV88001.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
           pealeana ATCC 700345]
          Length = 203

 Score =  274 bits (700), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 126/200 (63%), Positives = 159/200 (79%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           K  E V   LVPMVVEQT +GERSYDIYSRLLKER++F+ GQ+E+HMA LI AQLLFLE+
Sbjct: 3   KAPESVLNALVPMVVEQTAKGERSYDIYSRLLKERVIFLVGQVEEHMANLIVAQLLFLES 62

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           E+P K+I LYINSPGG VTAGMAIYDTMQFIKP +ST C+GQAASMG+ LL+ G +G R 
Sbjct: 63  ESPDKDIYLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFLLAGGAEGKRH 122

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
            LPN+R+++HQP GGF GQASDI  HAQ+I+ IK +LN +  ++ G+  E +E+  DRD+
Sbjct: 123 CLPNSRVMIHQPLGGFQGQASDIAIHAQEILGIKNKLNTMLAEHTGQPLEVIERDTDRDN 182

Query: 189 IMSASEACDWGVVDKVLMSR 208
            MSA+EA ++G+VD V+  R
Sbjct: 183 FMSATEAAEYGLVDSVIAKR 202


>gi|71281884|ref|YP_270452.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Colwellia
           psychrerythraea 34H]
 gi|110816457|sp|Q47XL8|CLPP_COLP3 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|71147624|gb|AAZ28097.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Colwellia
           psychrerythraea 34H]
          Length = 220

 Score =  274 bits (700), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 126/194 (64%), Positives = 159/194 (81%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQT +GERSYDIYSRLLKER++F+ GQ+EDHMA LI AQLLFLE+E+P K+I 
Sbjct: 26  ALVPMVVEQTAKGERSYDIYSRLLKERVIFLCGQVEDHMANLIIAQLLFLESESPDKDIY 85

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGMAIYDTM+FIKP IST C+GQAASMG+ LLS GEKG R+ LPNAR++
Sbjct: 86  LYINSPGGSVTAGMAIYDTMKFIKPNISTVCIGQAASMGAFLLSGGEKGKRYCLPNARVM 145

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASD E HA++I+ IK +LN++  ++ G+T ++V +  DRD+ +SA  A 
Sbjct: 146 IHQPLGGFQGQASDFEIHAKEILFIKDKLNKLMAEHTGQTLDKVSQDTDRDNFLSAEAAV 205

Query: 197 DWGVVDKVLMSRID 210
           ++G+VD +L  R D
Sbjct: 206 EYGLVDSILEQRND 219


>gi|330829918|ref|YP_004392870.1| ATP-dependent Clp protease proteolytic subunit [Aeromonas veronii
           B565]
 gi|328805054|gb|AEB50253.1| ATP-dependent Clp protease proteolytic subunit [Aeromonas veronii
           B565]
          Length = 207

 Score =  273 bits (699), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 126/192 (65%), Positives = 154/192 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVP+VVEQT +GERSYDIYSRLLKER++F+TGQ+EDHMA L+ AQLLFLE+ENP K+I 
Sbjct: 15  ALVPIVVEQTAKGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIY 74

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+ G KG RF LPNAR++
Sbjct: 75  IYINSPGGSVTAGMSIYDTMQFIKPDVSTVCMGQACSMGAFLLAGGAKGKRFCLPNARVM 134

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDI+ HAQ+I+KIK  LNE    + G+    +E+  DRD+ MSA +A 
Sbjct: 135 IHQPLGGFQGQASDIQIHAQEILKIKNTLNERLAFHTGQDMATIERDTDRDNFMSAEQAV 194

Query: 197 DWGVVDKVLMSR 208
            +G+VD VL  R
Sbjct: 195 AYGLVDGVLSQR 206


>gi|145298871|ref|YP_001141712.1| ATP-dependent Clp protease proteolytic subunit [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|226706437|sp|A4SM42|CLPP_AERS4 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|142851643|gb|ABO89964.1| ATP-dependent Clp protease, proteolytic subunit [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 207

 Score =  273 bits (699), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 124/191 (64%), Positives = 155/191 (81%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+PMVVEQT +GERSYDIYSRLLKER++F+TGQ+EDHMA L+ AQLLFLE+ENP ++IS+
Sbjct: 16  LIPMVVEQTAKGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDQDISI 75

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+ G KG RF LP+AR+++
Sbjct: 76  YINSPGGAVTAGMSIYDTMQFIKPDVSTVCMGQACSMGAFLLAGGAKGKRFCLPSARVMI 135

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQASDI+ HAQ+I+KIK  LNE    + G+    +E+  DRD+ MSA +A  
Sbjct: 136 HQPLGGFQGQASDIQIHAQEILKIKNTLNERLAFHTGQEMATIERDTDRDNFMSADQAVA 195

Query: 198 WGVVDKVLMSR 208
           +G+VD +L  R
Sbjct: 196 YGLVDGILSQR 206


>gi|212636027|ref|YP_002312552.1| ATP-dependent Clp protease proteolytic subunit [Shewanella
           piezotolerans WP3]
 gi|226706473|sp|B8CRF7|CLPP_SHEPW RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|212557511|gb|ACJ29965.1| Peptidase S14, ClpP [Shewanella piezotolerans WP3]
          Length = 203

 Score =  273 bits (699), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 127/200 (63%), Positives = 158/200 (79%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           K  E V   LVPMVVEQT +GERSYDIYSRLLKER++F+ GQ+E+HMA LI AQLLFLE+
Sbjct: 3   KAPESVLNALVPMVVEQTAKGERSYDIYSRLLKERVIFLVGQVEEHMANLIVAQLLFLES 62

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           E+P K+I LYINSPGG VTAGMAIYDTMQFIKP +ST C+GQAASMG+ LL+ G +G R 
Sbjct: 63  ESPDKDIYLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFLLAGGAEGKRH 122

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
            LPN+R+++HQP GGF GQASDI  HAQ+I+ IK +LN +  ++ G+  E +E+  DRD+
Sbjct: 123 CLPNSRVMIHQPLGGFQGQASDIAIHAQEILGIKNKLNTMLAEHTGQPIEVIERDTDRDN 182

Query: 189 IMSASEACDWGVVDKVLMSR 208
            MSA EA ++G+VD VL  R
Sbjct: 183 FMSADEAAEYGLVDSVLAKR 202


>gi|330503117|ref|YP_004379986.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           mendocina NK-01]
 gi|328917403|gb|AEB58234.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           mendocina NK-01]
          Length = 213

 Score =  273 bits (699), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 124/188 (65%), Positives = 156/188 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+EQ+ RGER+YDIYSRLLKER++F+ GQ+ED+MA LICAQLLFLEAENP K+I 
Sbjct: 18  GLVPMVIEQSARGERAYDIYSRLLKERVIFMVGQVEDYMANLICAQLLFLEAENPDKDIH 77

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGMAIYDTMQFIK  +ST C+GQA SMG+ LL+ G KG RF LPN+R++
Sbjct: 78  LYINSPGGSVTAGMAIYDTMQFIKADVSTTCIGQACSMGAFLLAGGAKGKRFCLPNSRVM 137

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+ I+ RLNE+   + G++ E +E+  +RD+ MSAS A 
Sbjct: 138 IHQPLGGFQGQASDIEIHAKEILFIRERLNELLAHHTGQSLETIERDTNRDNFMSASRAV 197

Query: 197 DWGVVDKV 204
           ++G+VD V
Sbjct: 198 EYGLVDAV 205


>gi|157374680|ref|YP_001473280.1| ATP-dependent Clp protease proteolytic subunit [Shewanella
           sediminis HAW-EB3]
 gi|189082467|sp|A8FTH9|CLPP_SHESH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|157317054|gb|ABV36152.1| Endopeptidase Clp [Shewanella sediminis HAW-EB3]
          Length = 203

 Score =  273 bits (698), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 126/197 (63%), Positives = 158/197 (80%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E V   LVPMVVEQT +GERSYDIYSRLLKER++F+ GQ+E+HMA LI AQLLFLE+E+P
Sbjct: 6   ESVLNALVPMVVEQTAKGERSYDIYSRLLKERVIFLVGQVEEHMANLIVAQLLFLESESP 65

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+I LYINSPGG VTAGMAIYDTMQFIKP +ST C+GQAASMG+ LL+ G +G R  LP
Sbjct: 66  DKDIYLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFLLAGGAEGKRHCLP 125

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+R+++HQP GGF GQASDI  HAQ+I+ IK +LN++   + G+  E +E+  DRD+ MS
Sbjct: 126 NSRVMIHQPLGGFQGQASDIAIHAQEILGIKNKLNQMLADHTGQPMEIIERDTDRDNFMS 185

Query: 192 ASEACDWGVVDKVLMSR 208
           A+EA ++G+VD VL  R
Sbjct: 186 AAEAAEYGLVDSVLSKR 202


>gi|238023189|ref|ZP_04603615.1| hypothetical protein GCWU000324_03115 [Kingella oralis ATCC 51147]
 gi|237865572|gb|EEP66712.1| hypothetical protein GCWU000324_03115 [Kingella oralis ATCC 51147]
          Length = 206

 Score =  273 bits (698), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 120/195 (61%), Positives = 160/195 (82%), Gaps = 2/195 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P V+EQ+ RGER++DIYSRLLKERI+F+ G + DH A L+ AQLLFLE+ENP K+I  
Sbjct: 10  LIPTVIEQSGRGERAFDIYSRLLKERIIFLVGPVNDHTANLVVAQLLFLESENPDKDIYF 69

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM+IYDTM+FIKP + T C+GQAASMG+ LLSAG KG RFALPN+R+++
Sbjct: 70  YINSPGGSVTAGMSIYDTMKFIKPDVQTLCLGQAASMGAFLLSAGTKGKRFALPNSRVMI 129

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASDIE HA++++K+K +LN++  ++ GK+ E++E+  DRD+ MSA EA
Sbjct: 130 HQPLISGGLGGQASDIEIHARELLKLKEKLNQMLAEHTGKSLEQIERDTDRDNFMSAQEA 189

Query: 196 CDWGVVDKVLMSRID 210
            D+G++DKV+ +R D
Sbjct: 190 ADYGLIDKVITTRAD 204


>gi|190570982|ref|YP_001975340.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|213019499|ref|ZP_03335305.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|226706556|sp|B3CLB1|CLPP_WOLPP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|190357254|emb|CAQ54678.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|212994921|gb|EEB55563.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 208

 Score =  273 bits (698), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 119/197 (60%), Positives = 168/197 (85%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P+VVEQT+RGER+YDIYSRL+KERI+FVTG IED+MA++I AQLLFLE+ENP K+I
Sbjct: 1   MTLIPIVVEQTSRGERAYDIYSRLVKERIIFVTGPIEDNMASVIVAQLLFLESENPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG++IYDTMQ+I P +ST C+GQAASMGSLLL+AG +G R++LP++RI
Sbjct: 61  CMYINSPGGVVTAGLSIYDTMQYINPDVSTLCIGQAASMGSLLLTAGAEGKRYSLPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG+ GQA+DIE HA +I+++K++LN+IY K+ G + +++E+ ++RD  M   EA
Sbjct: 121 MIHQPSGGYHGQATDIEIHANEILRVKKKLNQIYEKHTGNSLKKIEEMMERDKFMDPEEA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
              G++D+V+  R D++
Sbjct: 181 MKTGLIDRVIAERKDMK 197


>gi|297538721|ref|YP_003674490.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylotenera
           sp. 301]
 gi|297258068|gb|ADI29913.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylotenera
           sp. 301]
          Length = 219

 Score =  273 bits (698), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 120/195 (61%), Positives = 162/195 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG +PMVVEQ+ RGERSYDIYSRLLKER++F+ G + D  A L+ AQLLFLEAENP K+I
Sbjct: 23  LGYIPMVVEQSGRGERSYDIYSRLLKERVIFLVGPVNDMSANLVVAQLLFLEAENPDKDI 82

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG VTAGM+IYDTMQFIK  +ST C+GQAASMG+ LL+AG KG RF+LPN+R+
Sbjct: 83  SLYINSPGGSVTAGMSIYDTMQFIKADVSTLCIGQAASMGAFLLAAGAKGKRFSLPNSRV 142

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGGF GQ++DIE HA++I+ ++ +LN+I   + GKT  E+++  +RD+ MSA+++
Sbjct: 143 MIHQPSGGFQGQSTDIEIHAKEILYLRAKLNDILAHHTGKTAAEIDRDTERDNFMSATQS 202

Query: 196 CDWGVVDKVLMSRID 210
            ++G++DKV+ SR +
Sbjct: 203 VEYGMIDKVIESRTE 217


>gi|312961789|ref|ZP_07776287.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           fluorescens WH6]
 gi|311284048|gb|EFQ62631.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           fluorescens WH6]
          Length = 211

 Score =  273 bits (698), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 124/192 (64%), Positives = 158/192 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMVVEQ+ RGER+YDIYSRLLKER++F+ G +ED+MA LICAQLLFLEAENP K+I 
Sbjct: 18  GLVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIH 77

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+ LL+AG +G R+ LPN+R++
Sbjct: 78  LYINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGAFLLTAGAEGKRYCLPNSRVM 137

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+ I+ RLN +  K+ G T EE+E+  +RD+ MSA  A 
Sbjct: 138 IHQPLGGFQGQASDIEIHAKEILFIRERLNTLMAKHSGHTLEEIERDTNRDNFMSAEAAR 197

Query: 197 DWGVVDKVLMSR 208
           ++G++D V+  R
Sbjct: 198 EYGLIDAVIEKR 209


>gi|261494048|ref|ZP_05990551.1| S14 family endopeptidase ClpP [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261496191|ref|ZP_05992597.1| S14 family endopeptidase ClpP [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261308143|gb|EEY09440.1| S14 family endopeptidase ClpP [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261310214|gb|EEY11414.1| S14 family endopeptidase ClpP [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 197

 Score =  273 bits (698), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 125/196 (63%), Positives = 162/196 (82%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT++GERSYDIYSRLLKERI+F+ GQ+ED+MA LI AQLLFLEAE+P+K+I
Sbjct: 1   MALVPMVVEQTSKGERSYDIYSRLLKERIIFLNGQVEDNMANLIVAQLLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVTAG+AIYDTM FIKP ++T C GQAASMG+ LLSAG KG RFALP+ARI
Sbjct: 61  YLYINSPGGVVTAGLAIYDTMNFIKPDVATLCTGQAASMGAFLLSAGAKGKRFALPHARI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+  A++I+++K  L     ++ G++YE+V    +RD+ MSA EA
Sbjct: 121 MIHQPLGGARGQATDIQIQAEEILRLKATLTHRMAEHSGQSYEKVLADTERDNFMSAEEA 180

Query: 196 CDWGVVDKVLMSRIDI 211
            ++G++DKVL SR ++
Sbjct: 181 AEYGLIDKVLTSRSEV 196


>gi|254361750|ref|ZP_04977885.1| S14 family endopeptidase ClpP [Mannheimia haemolytica PHL213]
 gi|153093285|gb|EDN74281.1| S14 family endopeptidase ClpP [Mannheimia haemolytica PHL213]
          Length = 197

 Score =  273 bits (698), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 125/196 (63%), Positives = 162/196 (82%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT++GERSYDIYSRLLKERI+F+ GQ+ED+MA LI AQLLFLEAE+P+K+I
Sbjct: 1   MALVPMVVEQTSKGERSYDIYSRLLKERIIFLNGQVEDNMANLIVAQLLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVTAG+AIYDTM FIKP ++T C GQAASMG+ LLSAG KG RFALP+ARI
Sbjct: 61  YLYINSPGGVVTAGLAIYDTMNFIKPDVATLCTGQAASMGAFLLSAGAKGKRFALPHARI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+  A++I+++K  L     ++ G++YE+V    +RD+ MSA EA
Sbjct: 121 MIHQPLGGARGQATDIQIQAEEILRLKATLTRRMAEHSGQSYEKVLADTERDNFMSAEEA 180

Query: 196 CDWGVVDKVLMSRIDI 211
            ++G++DKVL SR ++
Sbjct: 181 AEYGLIDKVLTSRSEV 196


>gi|114321437|ref|YP_743120.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|122311052|sp|Q0A6A7|CLPP_ALHEH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|114227831|gb|ABI57630.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 214

 Score =  273 bits (698), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 121/192 (63%), Positives = 156/192 (81%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMVVEQ+ RGER+YDIYSRLLKER++F+ G +EDHMA LI AQLLFLE+ENP K+I 
Sbjct: 17  GLVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDHMANLIVAQLLFLESENPDKDIH 76

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VTAG+AIYDTMQFIKP +ST C+GQAASMG+LLL+ G KG R+ALPN+R++
Sbjct: 77  IYINSPGGAVTAGLAIYDTMQFIKPDVSTVCIGQAASMGALLLTGGTKGKRYALPNSRMM 136

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQA+D++ HA++I+ ++ RLN I   + G+  E + +  DRD+ MS   AC
Sbjct: 137 IHQPLGGFQGQATDVDIHAREILDMRDRLNRIMAHHTGQDMETIARDTDRDNFMSPDTAC 196

Query: 197 DWGVVDKVLMSR 208
           ++G+VD VL  R
Sbjct: 197 EYGLVDAVLADR 208


>gi|15837789|ref|NP_298477.1| ATP-dependent Clp protease proteolytic subunit [Xylella fastidiosa
           9a5c]
 gi|18203347|sp|Q9PE41|CLPP_XYLFA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|9106157|gb|AAF83997.1|AE003953_1 ATP-dependent Clp protease proteolytic subunit [Xylella fastidiosa
           9a5c]
          Length = 208

 Score =  273 bits (698), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 123/193 (63%), Positives = 162/193 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           L LVPMVVEQT+RGER+YDIYSRLLKER++F+ G I+D+MA LI AQLLFLEAENP+K+I
Sbjct: 8   LNLVPMVVEQTSRGERAYDIYSRLLKERLIFLVGPIDDYMANLIVAQLLFLEAENPEKDI 67

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           ++YINSPGGVVTAGMAIYDTMQ+IKP +ST C+GQAASMG+LLL++G  G R+ALPN+R+
Sbjct: 68  NIYINSPGGVVTAGMAIYDTMQYIKPAVSTICVGQAASMGALLLASGASGKRYALPNSRV 127

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DI+ HA++I+ ++ RLNEI  K+ G++ E +    +RD+  SA +A
Sbjct: 128 MIHQPLGGFQGQATDIDIHAREILALRARLNEILAKHTGQSLETIAHDTERDNFKSAVDA 187

Query: 196 CDWGVVDKVLMSR 208
             +G+VD+VL  R
Sbjct: 188 QAYGLVDQVLGQR 200


>gi|254514393|ref|ZP_05126454.1| ATP-dependent Clp protease, proteolytic subunit ClpP [gamma
           proteobacterium NOR5-3]
 gi|219676636|gb|EED33001.1| ATP-dependent Clp protease, proteolytic subunit ClpP [gamma
           proteobacterium NOR5-3]
          Length = 213

 Score =  273 bits (698), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 125/193 (64%), Positives = 158/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LGLVPMVVEQT+RGERSYDIYSRLLKER+VFV GQ+EDHMA LI AQLLFLE+ENP K+I
Sbjct: 15  LGLVPMVVEQTSRGERSYDIYSRLLKERVVFVVGQVEDHMANLIVAQLLFLESENPDKDI 74

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG++IYDTMQFIKP IST C+GQAASMG+ LLS G KG R+ LPNAR 
Sbjct: 75  HLYINSPGGSVTAGLSIYDTMQFIKPDISTMCLGQAASMGAFLLSGGTKGKRYCLPNART 134

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+DI+  A++I+ I+ RLN +  ++ G+  E +E+  +RD  M A ++
Sbjct: 135 MIHQPSGGAQGQATDIDIQAKEILIIRERLNRLMAEHTGQPLEVIERDTERDRFMDAEQS 194

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD+V+ +R
Sbjct: 195 KEYGLVDEVVTAR 207


>gi|315499702|ref|YP_004088505.1| endopeptidase clp [Asticcacaulis excentricus CB 48]
 gi|315417714|gb|ADU14354.1| Endopeptidase Clp [Asticcacaulis excentricus CB 48]
          Length = 209

 Score =  273 bits (697), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 125/199 (62%), Positives = 162/199 (81%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E++   L+P V+EQ++RGER+YDIYSR+LKERI+F+TG  ED MAT ICAQLLFLE+ENP
Sbjct: 6   ENLTSYLIPTVIEQSSRGERAYDIYSRMLKERIIFLTGPFEDGMATSICAQLLFLESENP 65

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +KEIS+YINSPGG VT+ +AIYDTMQ+IK P++T CMG AAS GSL+L AGE G R +LP
Sbjct: 66  KKEISMYINSPGGQVTSALAIYDTMQYIKSPVTTVCMGMAASAGSLILQAGEAGQRISLP 125

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N++I++HQPSGG  G ASDIE  A+DI K K+ LNEIYVK+ G+ Y+ +E+TLDRD  M+
Sbjct: 126 NSKIMVHQPSGGARGMASDIEIQAEDIRKTKKLLNEIYVKHTGQPYDVIERTLDRDRYMT 185

Query: 192 ASEACDWGVVDKVLMSRID 210
           A+EA ++G++D V   R D
Sbjct: 186 AAEAKEFGLIDHVYEKRTD 204


>gi|152995749|ref|YP_001340584.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Marinomonas
           sp. MWYL1]
 gi|254763795|sp|A6VW20|CLPP_MARMS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|150836673|gb|ABR70649.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Marinomonas
           sp. MWYL1]
          Length = 210

 Score =  273 bits (697), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 123/192 (64%), Positives = 156/192 (81%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+EQT RGERS+DIYSRLLKER++F+ GQ+EDHMA L+ AQLLFLE+ENP K+I 
Sbjct: 17  GLVPMVIEQTARGERSFDIYSRLLKERVIFLVGQVEDHMANLVVAQLLFLESENPDKDIH 76

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQAASMG+LLL+AG  G R+ LPN+R++
Sbjct: 77  LYINSPGGSVTAGMSIYDTMQFIKPDVSTMCIGQAASMGALLLTAGAAGKRYCLPNSRVM 136

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG+ GQASDIE H ++I+ IK +LNEI   + GK  E+V    DRD+ M+   A 
Sbjct: 137 IHQPLGGYQGQASDIEIHTREILSIKHKLNEIISFHTGKPIEQVALDTDRDNFMNPQTAK 196

Query: 197 DWGVVDKVLMSR 208
           D+G++D++L  R
Sbjct: 197 DYGLIDEILQKR 208


>gi|326795825|ref|YP_004313645.1| ATP-dependent Clp protease proteolytic subunit [Marinomonas
           mediterranea MMB-1]
 gi|326546589|gb|ADZ91809.1| ATP-dependent Clp protease proteolytic subunit [Marinomonas
           mediterranea MMB-1]
          Length = 210

 Score =  273 bits (697), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 122/193 (63%), Positives = 157/193 (81%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+EQT RGERS+DIYSRLLKER++F+ GQ+EDHMA L+ AQLLFLE+ENP K+I 
Sbjct: 17  GLVPMVIEQTARGERSFDIYSRLLKERVIFLVGQVEDHMANLVVAQLLFLESENPDKDIH 76

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQAASMG+LLL+AG  G R+ LPN+R++
Sbjct: 77  LYINSPGGSVTAGMSIYDTMQFIKPDVSTMCIGQAASMGALLLTAGAAGKRYCLPNSRVM 136

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG+ GQASDIE H ++I+ IK RLNEI   + G+  E+V +  DRD+ M+   A 
Sbjct: 137 IHQPLGGYQGQASDIEIHTREILSIKHRLNEIIAHHTGQPIEKVAEDTDRDNFMNPESAK 196

Query: 197 DWGVVDKVLMSRI 209
           ++G++D +L  R+
Sbjct: 197 EYGLIDDILEKRL 209


>gi|254282219|ref|ZP_04957187.1| ATP-dependent Clp protease, proteolytic subunit ClpP [gamma
           proteobacterium NOR51-B]
 gi|219678422|gb|EED34771.1| ATP-dependent Clp protease, proteolytic subunit ClpP [gamma
           proteobacterium NOR51-B]
          Length = 220

 Score =  273 bits (697), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 122/194 (62%), Positives = 159/194 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LGLVPMV+EQT+RGERS+DIYSRLLKER++FV G IEDHMA LI AQLLFLE+ENP K+I
Sbjct: 22  LGLVPMVIEQTSRGERSFDIYSRLLKERVIFVVGGIEDHMANLIVAQLLFLESENPDKDI 81

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG VTAG++IYDTMQF+KP +ST C+GQAASMG+ LLS G KG R+ LPNAR 
Sbjct: 82  HIYINSPGGSVTAGLSIYDTMQFVKPDVSTMCIGQAASMGAFLLSGGAKGKRYILPNART 141

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQASDIE  A++I+ ++ RLN +   + G+T E +E+  +RD  MSA ++
Sbjct: 142 MIHQPSGGAQGQASDIEIQAKEILYLRERLNRLMADHTGQTLETIERDTERDRFMSAEQS 201

Query: 196 CDWGVVDKVLMSRI 209
            ++G+VD+V+ +R+
Sbjct: 202 VEYGLVDEVVENRV 215


>gi|190892539|ref|YP_001979081.1| endopeptidase Clp protein, subunit 1 [Rhizobium etli CIAT 652]
 gi|218516193|ref|ZP_03513033.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli
           8C-3]
 gi|190697818|gb|ACE91903.1| endopeptidase Clp protein, subunit 1 [Rhizobium etli CIAT 652]
          Length = 203

 Score =  272 bits (696), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 119/193 (61%), Positives = 158/193 (81%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMV+EQ++RGERS+DIYSRLL+ERI+F+ G++ D ++ L+CAQLLFLEAENP K I+L
Sbjct: 7   LVPMVIEQSSRGERSFDIYSRLLRERIIFLNGEVNDTVSALVCAQLLFLEAENPNKPINL 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VT+G+A+YDTM+FI  P+ T CMG A SMGS LL AGE G R ALPNA IL+
Sbjct: 67  YINSPGGAVTSGLAMYDTMRFIHAPVHTLCMGTARSMGSFLLMAGEPGERAALPNASILI 126

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGGF GQASD+  HA++I+K K+R+  +Y ++CG++YE+ E+ +DRD  M+A EA +
Sbjct: 127 HQPSGGFQGQASDMLIHAEEILKTKQRMTRLYAEHCGRSYEDFERGMDRDRFMTAEEALE 186

Query: 198 WGVVDKVLMSRID 210
           WG++D++L  R D
Sbjct: 187 WGLIDRILKVRED 199


>gi|88705172|ref|ZP_01102884.1| ATP-dependent Clp protease, proteolytic subunit [Congregibacter
           litoralis KT71]
 gi|88700867|gb|EAQ97974.1| ATP-dependent Clp protease, proteolytic subunit [Congregibacter
           litoralis KT71]
          Length = 206

 Score =  272 bits (696), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 125/193 (64%), Positives = 158/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LGLVPMVVEQT+RGERSYDIYSRLLKER+VFV GQ+EDHMA LI AQLLFLE+ENP K+I
Sbjct: 8   LGLVPMVVEQTSRGERSYDIYSRLLKERVVFVVGQVEDHMANLIVAQLLFLESENPDKDI 67

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG++IYDTMQFIKP IST C+GQAASMG+ LLS G KG R+ LPNAR 
Sbjct: 68  HLYINSPGGSVTAGLSIYDTMQFIKPDISTMCLGQAASMGAFLLSGGTKGKRYCLPNART 127

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+DI+  A++I+ I+ RLN +  ++ G+  E +E+  +RD  M A ++
Sbjct: 128 MIHQPSGGAQGQATDIDIQAKEILIIRERLNRLMAEHTGQPLEVIERDTERDRFMDAEQS 187

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD+V+ +R
Sbjct: 188 KEYGLVDEVVTAR 200


>gi|77360986|ref|YP_340561.1| ATP-dependent Clp protease proteolytic subunit [Pseudoalteromonas
           haloplanktis TAC125]
 gi|110816463|sp|Q3IF46|CLPP_PSEHT RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|76875897|emb|CAI87118.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           (Caseinolytic protease) (Protease Ti)(Heat shock protein
           F21.5) [Pseudoalteromonas haloplanktis TAC125]
          Length = 205

 Score =  272 bits (696), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 125/196 (63%), Positives = 156/196 (79%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
           D    LVPMVVEQT +GERSYDIYSRLLKERI+F+TG +ED+MA LI AQ+LFLE+ENP 
Sbjct: 7   DPLNALVPMVVEQTPKGERSYDIYSRLLKERIIFLTGPVEDNMANLILAQMLFLESENPD 66

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K+I LYINSPGG VTAGMAIYDTM FIKP +ST C+GQAASMG+ LL+AG KG RF LPN
Sbjct: 67  KDIFLYINSPGGSVTAGMAIYDTMNFIKPDVSTICVGQAASMGAFLLTAGAKGKRFCLPN 126

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           +R+++HQP GGF GQASD E HA++I+ IK +LN +  ++ G+  + + K  DRD+ MSA
Sbjct: 127 SRVMIHQPLGGFQGQASDFEIHAKEILSIKDKLNRLMAEHTGQPLDVISKDTDRDNFMSA 186

Query: 193 SEACDWGVVDKVLMSR 208
            +A D+G+VD V  +R
Sbjct: 187 DQAVDYGIVDSVFKNR 202


>gi|118602249|ref|YP_903464.1| ATP-dependent Clp protease proteolytic subunit [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|166214707|sp|A1AVN6|CLPP_RUTMC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|118567188|gb|ABL01993.1| ATP-dependent Clp protease proteolytic subunit ClpP [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
          Length = 198

 Score =  272 bits (696), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 122/193 (63%), Positives = 161/193 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           L  +P+VVEQ+ RGER+YDIYSRLLKERI+F+ G IED+MA ++ AQLLFLE+ENP ++I
Sbjct: 6   LNQIPIVVEQSARGERAYDIYSRLLKERIIFLVGPIEDYMANVVVAQLLFLESENPDQDI 65

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG+V+AG+AIYDTMQFIKP +ST C+GQAASMG+LLL+AG K  RFALPN R 
Sbjct: 66  HLYINSPGGLVSAGLAIYDTMQFIKPDVSTLCIGQAASMGALLLTAGAKDKRFALPNVRC 125

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGFSGQASDI+ HAQ+I+K++ +LN+I+  +  +T + ++K  DRD+ MSA+EA
Sbjct: 126 MIHQPLGGFSGQASDIDIHAQEILKVREKLNQIFKLHTSQTIKTIQKDTDRDNFMSANEA 185

Query: 196 CDWGVVDKVLMSR 208
             +G++DKVL  R
Sbjct: 186 TKYGLIDKVLAKR 198


>gi|220934115|ref|YP_002513014.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995425|gb|ACL72027.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 216

 Score =  272 bits (696), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 124/209 (59%), Positives = 166/209 (79%), Gaps = 1/209 (0%)

Query: 1   MSFEGCAKKDSEDV-FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLI 59
           MS +G   + + D   L LVPMVVEQT RGER+YDIYSRLLKER++F  G +ED+MA +I
Sbjct: 1   MSNQGIGDRGALDTRALNLVPMVVEQTARGERAYDIYSRLLKERVIFAVGPVEDYMANVI 60

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
            AQLLFLE+ENP K+ISLYINSPGG VTAGMAIYDTMQFIKP +ST C+GQAASMG++LL
Sbjct: 61  VAQLLFLESENPDKDISLYINSPGGAVTAGMAIYDTMQFIKPDVSTLCIGQAASMGAVLL 120

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
           + G KG RF LP++R+++HQP GGF GQA+DI+ HA++I+K++  LN I   + G++ E+
Sbjct: 121 AGGAKGKRFCLPHSRVMIHQPLGGFQGQATDIDIHAREILKVRAELNRILAHHTGQSIEQ 180

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           +E+  +RD  ++  EA ++G++D+VL SR
Sbjct: 181 IEQDTERDRFLNPVEAAEYGLIDQVLSSR 209


>gi|262373455|ref|ZP_06066733.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter
           junii SH205]
 gi|262311208|gb|EEY92294.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter
           junii SH205]
          Length = 201

 Score =  272 bits (696), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 124/192 (64%), Positives = 159/192 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVP+VVEQ++RGERS+DIYSRLL+ER++F+TG++ED+MA LI AQ+LFLEAENP+K+I 
Sbjct: 9   ALVPVVVEQSSRGERSFDIYSRLLRERVIFLTGEVEDNMANLIVAQMLFLEAENPEKDIH 68

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGMAIYDTMQFIKP + T+CMGQAASMG+ LL+AG KG R+ L NAR++
Sbjct: 69  LYINSPGGSVTAGMAIYDTMQFIKPDVVTYCMGQAASMGAFLLNAGAKGKRYCLENARVM 128

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+ IK RLN +  ++ G+ YE V +  DRD+ M+A  A 
Sbjct: 129 IHQPLGGFRGQASDIEIHAREILFIKERLNRLMAQHSGQDYETVARDTDRDNFMTAEAAK 188

Query: 197 DWGVVDKVLMSR 208
            +G+VD+VL  R
Sbjct: 189 QYGLVDQVLSKR 200


>gi|260913095|ref|ZP_05919577.1| ATP-dependent Clp protease [Pasteurella dagmatis ATCC 43325]
 gi|260632682|gb|EEX50851.1| ATP-dependent Clp protease [Pasteurella dagmatis ATCC 43325]
          Length = 193

 Score =  272 bits (696), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 124/193 (64%), Positives = 160/193 (82%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++PMVVEQT+RGERSYDIYSRLLKER++F++G++ED MA LI AQLLFLE+E+P+K+I
Sbjct: 1   MSVIPMVVEQTSRGERSYDIYSRLLKERVIFLSGEVEDRMANLIVAQLLFLESEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           ++YINSPGG VTAGMAIYDTMQFIKP I T C+GQA SMG+ LL+ G  G R ALPNAR+
Sbjct: 61  NIYINSPGGSVTAGMAIYDTMQFIKPDIRTLCVGQACSMGAFLLAGGTAGKRIALPNARV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQASDI+ HAQ+I+KIK+ LNE    + G++ E +E+  DRD+ MSA EA
Sbjct: 121 MIHQPLGGFRGQASDIQIHAQEILKIKQTLNERLAFHTGQSIERIERDTDRDNFMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD+VL+ R
Sbjct: 181 KAYGLVDEVLVKR 193


>gi|262280902|ref|ZP_06058685.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter
           calcoaceticus RUH2202]
 gi|299771640|ref|YP_003733666.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter sp.
           DR1]
 gi|262257802|gb|EEY76537.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter
           calcoaceticus RUH2202]
 gi|298701728|gb|ADI92293.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter sp.
           DR1]
          Length = 201

 Score =  272 bits (696), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 124/192 (64%), Positives = 159/192 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVP+VVEQ++RGERS+DIYSRLL+ER++F+TG++ED+MA LI AQ+LFLEAENP K+I 
Sbjct: 9   ALVPVVVEQSSRGERSFDIYSRLLRERVIFLTGEVEDNMANLIVAQMLFLEAENPDKDIH 68

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGMAIYDTMQFIKP + T+CMGQAASMG+ LL+AG KG R+ L NAR++
Sbjct: 69  LYINSPGGSVTAGMAIYDTMQFIKPDVVTYCMGQAASMGAFLLNAGAKGKRYCLENARVM 128

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+ IK RLN +  ++ G+ YE V +  DRD+ M+A  A 
Sbjct: 129 IHQPLGGFRGQASDIEIHAREILFIKERLNRLMAEHSGQDYETVARDTDRDNFMTAQSAK 188

Query: 197 DWGVVDKVLMSR 208
           ++G+VD+VL  R
Sbjct: 189 EYGLVDQVLSKR 200


>gi|148284741|ref|YP_001248831.1| ATP-dependent protease proteolytic subunit [Orientia tsutsugamushi
           str. Boryong]
 gi|189183283|ref|YP_001937068.1| ATP-dependent Clp protease proteolytic subunit [Orientia
           tsutsugamushi str. Ikeda]
 gi|146740180|emb|CAM80416.1| ATP-dependent protease proteolytic subunit [Orientia tsutsugamushi
           str. Boryong]
 gi|189180054|dbj|BAG39834.1| ATP-dependent Clp protease proteolytic subunit [Orientia
           tsutsugamushi str. Ikeda]
          Length = 206

 Score =  272 bits (696), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 123/196 (62%), Positives = 160/196 (81%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VPMVVEQTNRGER+YDIYSRLLKERIVFV G+IEDHMA L+ AQLLFLEAE+P K+I +Y
Sbjct: 10  VPMVVEQTNRGERAYDIYSRLLKERIVFVCGEIEDHMANLVVAQLLFLEAESPDKKIFMY 69

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAGMAIYDTMQ+IK P+ T C+GQA SMGSLLL+AG+K MR  LPN+RI++H
Sbjct: 70  INSPGGAVTAGMAIYDTMQYIKSPVLTLCLGQACSMGSLLLAAGQKSMRHCLPNSRIMIH 129

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGGF GQA+DI+ HAQ+I+K+K+ +N +YV +  +  + +E++++RD+ M    A ++
Sbjct: 130 QPSGGFRGQATDIQIHAQEILKMKKIINNLYVHHTNQPLQVIEESMERDNFMDPVAAKEF 189

Query: 199 GVVDKVLMSRIDIEEK 214
           G+VD +   R  + E+
Sbjct: 190 GLVDHITTERAQVAER 205


>gi|146307078|ref|YP_001187543.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           mendocina ymp]
 gi|166214700|sp|A4XTZ5|CLPP_PSEMY RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|145575279|gb|ABP84811.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pseudomonas
           mendocina ymp]
          Length = 213

 Score =  272 bits (696), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 123/188 (65%), Positives = 155/188 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+EQ+ RGER+YDIYSRLLKER++F+ GQ+ED+MA LICAQLLFLEAENP K+I 
Sbjct: 18  GLVPMVIEQSARGERAYDIYSRLLKERVIFLVGQVEDYMANLICAQLLFLEAENPDKDIH 77

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGMAIYDTMQFIK  +ST C+GQA SMG+ LL+ G KG RF LPN+R++
Sbjct: 78  LYINSPGGSVTAGMAIYDTMQFIKADVSTTCIGQACSMGAFLLAGGAKGKRFCLPNSRVM 137

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+ I+ RLNE+   + G++ E +E+  +RD+ MSA  A 
Sbjct: 138 IHQPLGGFQGQASDIEIHAKEILFIRERLNELLAHHTGQSLETIERDTNRDNFMSAPRAV 197

Query: 197 DWGVVDKV 204
           ++G+VD V
Sbjct: 198 EYGIVDAV 205


>gi|300311895|ref|YP_003775987.1| ATP-dependent Clp protease proteolytic subunit [Herbaspirillum
           seropedicae SmR1]
 gi|124483356|emb|CAM32551.1| ATP-dependent Clp protease (proteolytic subunit) protein
           [Herbaspirillum seropedicae]
 gi|300074680|gb|ADJ64079.1| ATP-dependent Clp protease (proteolytic subunit) protein
           [Herbaspirillum seropedicae SmR1]
          Length = 208

 Score =  272 bits (695), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 126/205 (61%), Positives = 160/205 (78%), Gaps = 1/205 (0%)

Query: 5   GCAKKDSEDV-FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQL 63
           G  K+ + D   LG+VPMV+EQ+ RGER+YDIYSRLLKERI+F+ G + D MA LI AQL
Sbjct: 3   GLMKQSALDTQMLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDAMANLIVAQL 62

Query: 64  LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           LFLE+ENP K+ISLYINSPGG V+AGMAI+DTMQFIKP +ST C G AASMG+ LL+AG 
Sbjct: 63  LFLESENPDKDISLYINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAAGA 122

Query: 124 KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
           KG RF+LPN+RI++HQP GG  GQASDIE  A++I+ ++ RLN I  +  G+T E++ K 
Sbjct: 123 KGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLNTILAEKTGRTVEQISKD 182

Query: 184 LDRDHIMSASEACDWGVVDKVLMSR 208
            DRD+ MSA  A ++G++DKVL  R
Sbjct: 183 TDRDNFMSADAAAEYGLIDKVLTER 207


>gi|329850562|ref|ZP_08265407.1| clp protease family protein [Asticcacaulis biprosthecum C19]
 gi|328840877|gb|EGF90448.1| clp protease family protein [Asticcacaulis biprosthecum C19]
          Length = 208

 Score =  272 bits (695), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 124/193 (64%), Positives = 158/193 (81%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P V+EQ++RGER+YDIYSR+LKERI+F+TG  ED MAT ICAQLLFLE+ENP+KEIS+
Sbjct: 12  LIPTVIEQSSRGERAYDIYSRMLKERIIFLTGPFEDGMATSICAQLLFLESENPKKEISM 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VT+ +AIYDTMQ+IK P++T CMG AAS GSL+L AGE G R +LPN++I++
Sbjct: 72  YINSPGGQVTSALAIYDTMQYIKSPVTTVCMGMAASAGSLILQAGENGQRISLPNSKIMV 131

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  G ASDIE  A+D+ K K+ LNEIYVK+ G+ YE +E+TLDRD  M+A EA +
Sbjct: 132 HQPSGGARGMASDIEIQAEDMRKTKKLLNEIYVKHTGQPYEVIERTLDRDRYMTAEEAKE 191

Query: 198 WGVVDKVLMSRID 210
           +G++D V   R D
Sbjct: 192 FGLIDHVYEKRAD 204


>gi|319789118|ref|YP_004150751.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermovibrio
           ammonificans HB-1]
 gi|317113620|gb|ADU96110.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermovibrio
           ammonificans HB-1]
          Length = 200

 Score =  272 bits (695), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 126/197 (63%), Positives = 163/197 (82%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E++    VP+V+EQT RGER+YDIYSRLLK+RIV +   I+DH+A LI AQLLFLEAE+P
Sbjct: 2   EEILNQFVPIVIEQTGRGERAYDIYSRLLKDRIVMLGTPIDDHVANLIVAQLLFLEAEDP 61

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+I LYINSPGGVVTAG+AIYDTMQ+IKP + T CMGQAASMG++LL+AG KG RFALP
Sbjct: 62  EKDIYLYINSPGGVVTAGLAIYDTMQYIKPDVVTICMGQAASMGAVLLAAGAKGKRFALP 121

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           +ARI++HQP GGF GQA+DIE HA++I+++KR LNEI  K+  +  E+VE+  +RD+ MS
Sbjct: 122 HARIMIHQPLGGFQGQATDIEIHAKEILRLKRMLNEILAKHTRQPVEKVEQDTERDYFMS 181

Query: 192 ASEACDWGVVDKVLMSR 208
           A EA ++G++DKVL  R
Sbjct: 182 AEEAKEYGLIDKVLTRR 198


>gi|293610272|ref|ZP_06692573.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827504|gb|EFF85868.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325124452|gb|ADY83975.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 201

 Score =  272 bits (695), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 124/192 (64%), Positives = 159/192 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVP+VVEQ++RGERS+DIYSRLL+ER++F+TG++ED+MA LI AQ+LFLEAENP K+I 
Sbjct: 9   ALVPVVVEQSSRGERSFDIYSRLLRERVIFLTGEVEDNMANLIVAQMLFLEAENPDKDIH 68

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGMAIYDTMQFIKP + T+CMGQAASMG+ LL+AG KG R+ L NAR++
Sbjct: 69  LYINSPGGSVTAGMAIYDTMQFIKPDVVTYCMGQAASMGAFLLNAGAKGKRYCLENARVM 128

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+ IK RLN +  ++ G+ YE V +  DRD+ M+A  A 
Sbjct: 129 IHQPLGGFRGQASDIEIHAREILFIKERLNRLMAEHSGQDYETVARDTDRDNFMTAQAAK 188

Query: 197 DWGVVDKVLMSR 208
           ++G+VD+VL  R
Sbjct: 189 EYGLVDQVLSKR 200


>gi|15966977|ref|NP_387330.1| ATP-dependent Clp protease proteolytic subunit [Sinorhizobium
           meliloti 1021]
 gi|307302445|ref|ZP_07582202.1| Endopeptidase Clp [Sinorhizobium meliloti BL225C]
 gi|307316225|ref|ZP_07595669.1| Endopeptidase Clp [Sinorhizobium meliloti AK83]
 gi|18202305|sp|P58277|CLPP1_RHIME RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|15076250|emb|CAC47803.1| Probable ATP-dependent CLP protease proteolytic subunit
           [Sinorhizobium meliloti 1021]
 gi|306898065|gb|EFN28807.1| Endopeptidase Clp [Sinorhizobium meliloti AK83]
 gi|306903115|gb|EFN33705.1| Endopeptidase Clp [Sinorhizobium meliloti BL225C]
          Length = 205

 Score =  272 bits (695), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 118/191 (61%), Positives = 156/191 (81%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQ++RGERS+DIYSRLL+ERI+F+ G++ D ++ L+CAQLLFLEAE+P+K I L
Sbjct: 7   LVPMVVEQSSRGERSFDIYSRLLRERIIFLNGEVNDAVSALVCAQLLFLEAESPKKPIQL 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G A+YDTM++I+ P+ T CMG A SMGS LL AGE G R ALPNA IL+
Sbjct: 67  YINSPGGVVTSGFAMYDTMRYIRAPVHTLCMGTARSMGSFLLMAGEAGERTALPNASILV 126

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGGF GQASD+  HA++I + K R+  +Y ++CG+TYEE E+ +DRD  M+A EA +
Sbjct: 127 HQPSGGFQGQASDMLIHAEEIRRTKHRMTRLYAEHCGRTYEEFERAMDRDRFMTAEEALE 186

Query: 198 WGVVDKVLMSR 208
           WG++D+++  R
Sbjct: 187 WGLIDRIITER 197


>gi|116250938|ref|YP_766776.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|116243107|sp|Q1MK43|CLPP1_RHIL3 RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|115255586|emb|CAK06667.1| putative ATP-dependent Clp protease proteolytic subunit [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 203

 Score =  272 bits (695), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 118/191 (61%), Positives = 159/191 (83%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMV+EQ++RGERS+DIYSRLL+ERI+F+ G++ D ++ L+CAQLLFLEAEN +K I+L
Sbjct: 7   LVPMVIEQSSRGERSFDIYSRLLRERIIFLNGEVNDTVSALVCAQLLFLEAENSKKPINL 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G+A+YDTM+FI+ P+ T CMG A SMGS LL AGE G R ALPNA IL+
Sbjct: 67  YINSPGGVVTSGLAMYDTMRFIRAPVHTLCMGTARSMGSFLLMAGEAGGRAALPNASILI 126

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGGF GQASD+  HA++I+K K+R+  +Y ++CG++YE+ E+ +DRD  M+A EA +
Sbjct: 127 HQPSGGFQGQASDMMIHAEEILKTKQRMTRLYAEHCGRSYEDFERGMDRDRFMTAEEALE 186

Query: 198 WGVVDKVLMSR 208
           WG++D++L  R
Sbjct: 187 WGLIDRILTVR 197


>gi|28198386|ref|NP_778700.1| ATP-dependent Clp protease proteolytic subunit [Xylella fastidiosa
           Temecula1]
 gi|182681028|ref|YP_001829188.1| ATP-dependent Clp protease proteolytic subunit [Xylella fastidiosa
           M23]
 gi|32129456|sp|Q87E51|CLPP_XYLFT RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706560|sp|B2I8K3|CLPP_XYLF2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|28056456|gb|AAO28349.1| ATP-dependent Clp protease proteolytic subunit [Xylella fastidiosa
           Temecula1]
 gi|182631138|gb|ACB91914.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Xylella
           fastidiosa M23]
 gi|307579496|gb|ADN63465.1| ATP-dependent Clp protease proteolytic subunit [Xylella fastidiosa
           subsp. fastidiosa GB514]
          Length = 208

 Score =  272 bits (695), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 122/193 (63%), Positives = 161/193 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           L LVPMVVEQT+RGER+YDIYSRLLKER++F+ G I+D+MA LI AQLLFLEAENP+K+I
Sbjct: 8   LNLVPMVVEQTSRGERAYDIYSRLLKERLIFLVGPIDDYMANLIVAQLLFLEAENPEKDI 67

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           ++YINSPGGVVTAGMAIYDTMQ+IKP +ST C+GQAASMG+LLL++G  G R+ALPN+R+
Sbjct: 68  NIYINSPGGVVTAGMAIYDTMQYIKPAVSTICVGQAASMGALLLASGASGKRYALPNSRV 127

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DI+ HA++I+ ++ RLNEI  K+ G++ E +    +RD+  SA +A
Sbjct: 128 MIHQPLGGFQGQATDIDIHAREILALRARLNEILAKHTGQSLETIAHDTERDNFKSAVDA 187

Query: 196 CDWGVVDKVLMSR 208
             +G+VD+V   R
Sbjct: 188 QAYGLVDQVFGQR 200


>gi|262369923|ref|ZP_06063250.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter
           johnsonii SH046]
 gi|262314962|gb|EEY96002.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter
           johnsonii SH046]
          Length = 201

 Score =  271 bits (694), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 124/192 (64%), Positives = 159/192 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQ++RGERS+DIYSRLL+ER++F+TG++ED+MA LI AQ+LFLEAENP K+I 
Sbjct: 9   ALVPMVVEQSSRGERSFDIYSRLLRERVIFMTGEVEDNMANLIVAQMLFLEAENPDKDIH 68

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGMAIYDTMQFIKP + T+CMGQAASMG+ LL++G KG R+ L NAR++
Sbjct: 69  LYINSPGGSVTAGMAIYDTMQFIKPDVVTYCMGQAASMGAFLLNSGAKGKRYCLENARVM 128

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+ IK RLN +  ++ G+ YE V +  DRD+ M+A  A 
Sbjct: 129 IHQPLGGFRGQASDIEIHAREILFIKERLNRLMAEHSGQDYETVARDTDRDNFMTAQAAK 188

Query: 197 DWGVVDKVLMSR 208
           ++G+VD+VL  R
Sbjct: 189 EYGLVDEVLSKR 200


>gi|323144789|ref|ZP_08079363.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Succinatimonas hippei YIT 12066]
 gi|322415435|gb|EFY06195.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Succinatimonas hippei YIT 12066]
          Length = 200

 Score =  271 bits (694), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 125/194 (64%), Positives = 159/194 (81%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMV+EQT RGERS+DIYSRLLKER++F+TG++EDHMA LI AQLLFLE+++P K+I L
Sbjct: 5   LVPMVIEQTARGERSFDIYSRLLKERVIFMTGEVEDHMADLIVAQLLFLESDDPDKDIYL 64

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVTAGMAIYDTMQ+IKP + T CMGQA SMGS LL+ G  G RFALP++RI++
Sbjct: 65  YINSPGGVVTAGMAIYDTMQYIKPDVCTLCMGQACSMGSFLLAGGAPGKRFALPHSRIMI 124

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQASDI  HA++  ++KR L E+  K+ GK+ +EV +  DRD+ MSA EA  
Sbjct: 125 HQPLGGFKGQASDIMIHARETERVKRTLTELLAKHTGKSVDEVMQDCDRDNFMSAEEALA 184

Query: 198 WGVVDKVLMSRIDI 211
           +G++D+V+ SR +I
Sbjct: 185 YGLIDRVITSRDEI 198


>gi|329894939|ref|ZP_08270738.1| ATP-dependent Clp protease proteolytic subunit [gamma
           proteobacterium IMCC3088]
 gi|328922668|gb|EGG30003.1| ATP-dependent Clp protease proteolytic subunit [gamma
           proteobacterium IMCC3088]
          Length = 200

 Score =  271 bits (694), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 123/193 (63%), Positives = 160/193 (82%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LGL+PMVVEQT+RGERSYDIYSRLLKER++FV GQ+EDHMA LI AQLLFLE+ENP K+I
Sbjct: 7   LGLIPMVVEQTSRGERSYDIYSRLLKERVIFVVGQVEDHMANLIVAQLLFLESENPDKDI 66

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG+AIYDTM+FIKP ++T CMGQAASMG+ LLSAG KG R+ LPNAR 
Sbjct: 67  HLYINSPGGSVTAGLAIYDTMKFIKPDVTTTCMGQAASMGAFLLSAGAKGKRYCLPNART 126

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+DI+  A++I+ I+ RLN +  ++ G+  + +E+  +RD  M+A ++
Sbjct: 127 MIHQPSGGAQGQATDIDIQAKEILIIRERLNRLMAEHTGQPIDVIERDTERDRFMNAEQS 186

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD+V+ SR
Sbjct: 187 KEYGLVDEVVSSR 199


>gi|212704616|ref|ZP_03312744.1| hypothetical protein DESPIG_02679 [Desulfovibrio piger ATCC 29098]
 gi|212672015|gb|EEB32498.1| hypothetical protein DESPIG_02679 [Desulfovibrio piger ATCC 29098]
          Length = 200

 Score =  271 bits (694), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 114/200 (57%), Positives = 170/200 (85%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMV+E T R ER+YDIYSRLLK+RI+ ++ ++ D +A+L+CAQLLFLE+++P+KEI
Sbjct: 1   MSLVPMVIETTGRSERAYDIYSRLLKDRIILLSSEVNDTVASLVCAQLLFLESQDPEKEI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGG VTAG+AIYDTM++I  P+ST CMG+AASMG+ LL+AG+KGMR+ALPN++I
Sbjct: 61  NLYINSPGGSVTAGLAIYDTMRYITAPVSTVCMGRAASMGAFLLAAGQKGMRYALPNSQI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+D++ HA+++++IK RLN +  +N GK+Y+EV +  +RD+ ++  +A
Sbjct: 121 MIHQPLGGFQGQATDVDIHAREMLRIKERLNTMLAENTGKSYDEVVRATERDNFLTPEQA 180

Query: 196 CDWGVVDKVLMSRIDIEEKS 215
            ++G++D+VL+SR D+ EK+
Sbjct: 181 LEFGIIDRVLVSRSDMTEKN 200


>gi|254480762|ref|ZP_05094009.1| ATP-dependent Clp protease, proteolytic subunit ClpP [marine gamma
           proteobacterium HTCC2148]
 gi|214039345|gb|EEB80005.1| ATP-dependent Clp protease, proteolytic subunit ClpP [marine gamma
           proteobacterium HTCC2148]
          Length = 213

 Score =  271 bits (694), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 124/193 (64%), Positives = 158/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LGLVPMVVEQT+RGERSYDIYSRLLKER++FV GQ+EDHMA LI AQLLFLE+ENP K+I
Sbjct: 16  LGLVPMVVEQTSRGERSYDIYSRLLKERVIFVVGQVEDHMANLIVAQLLFLESENPDKDI 75

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG++IYDTMQFIKP +ST C+GQAASMG+ LL  G KG R+ LPNAR 
Sbjct: 76  HLYINSPGGSVTAGLSIYDTMQFIKPDVSTMCLGQAASMGAFLLCGGAKGKRYCLPNART 135

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+DIE  A++I+ I+ +LN++  ++ G+  E +E+  +RD  M+A E+
Sbjct: 136 MIHQPSGGAQGQATDIEIQAKEILIIREKLNQLMAEHTGQPLEVIERDTERDRFMNAEES 195

Query: 196 CDWGVVDKVLMSR 208
             +G+VD+V+ SR
Sbjct: 196 TAYGLVDEVVTSR 208


>gi|325577258|ref|ZP_08147742.1| ATP-dependent Clp protease, protease subunit [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325160840|gb|EGC72961.1| ATP-dependent Clp protease, protease subunit [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 193

 Score =  271 bits (693), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 124/193 (64%), Positives = 159/193 (82%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++PMVVEQT+RGERSYDIYSRLLKER++F++G++ED MA LI AQLLFLE+E+P+K+I
Sbjct: 1   MSVIPMVVEQTSRGERSYDIYSRLLKERVIFLSGEVEDRMANLIVAQLLFLESEDPKKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           ++YINSPGG VTAGMAIYDTMQFIKP + T C+GQA SMG+ LL+ G  G R ALPNAR+
Sbjct: 61  NIYINSPGGSVTAGMAIYDTMQFIKPDVRTLCIGQACSMGAFLLAGGTAGKRAALPNARV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQASDI+ HAQ+I+KIK+ LNE    + G++ E +EK  DRD+ MSA EA
Sbjct: 121 MIHQPLGGFRGQASDIQIHAQEILKIKQTLNERLAFHTGQSIERIEKDTDRDNFMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD VL+ R
Sbjct: 181 KAYGLVDDVLIKR 193


>gi|226953943|ref|ZP_03824407.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter sp.
           ATCC 27244]
 gi|294651552|ref|ZP_06728861.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter
           haemolyticus ATCC 19194]
 gi|226835297|gb|EEH67680.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter sp.
           ATCC 27244]
 gi|292822575|gb|EFF81469.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 201

 Score =  271 bits (693), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 123/192 (64%), Positives = 160/192 (83%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVP+VVEQ++RGERS+DI+SRLL+ER++F+TG++ED+MA LI AQ+LFLEAENP+K+I 
Sbjct: 9   ALVPVVVEQSSRGERSFDIFSRLLRERVIFLTGEVEDNMANLIVAQMLFLEAENPEKDIH 68

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGMAIYDTMQFIKP + T+CMGQAASMG+ LL+AG KG R+ L NAR++
Sbjct: 69  LYINSPGGSVTAGMAIYDTMQFIKPDVVTYCMGQAASMGAFLLNAGAKGKRYCLENARVM 128

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+ IK RLN +  ++ G+ YE V +  DRD+ M+A  A 
Sbjct: 129 IHQPLGGFRGQASDIEIHAREILFIKERLNRLMAEHSGQDYETVARDTDRDNFMTAQAAK 188

Query: 197 DWGVVDKVLMSR 208
           ++G+VD+VL  R
Sbjct: 189 EYGLVDQVLSKR 200


>gi|71276511|ref|ZP_00652786.1| Peptidase S14, ClpP [Xylella fastidiosa Dixon]
 gi|71900578|ref|ZP_00682705.1| Peptidase S14, ClpP [Xylella fastidiosa Ann-1]
 gi|170729732|ref|YP_001775165.1| ATP-dependent Clp protease proteolytic subunit [Xylella fastidiosa
           M12]
 gi|226706561|sp|B0U5N1|CLPP_XYLFM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|71162688|gb|EAO12415.1| Peptidase S14, ClpP [Xylella fastidiosa Dixon]
 gi|71729635|gb|EAO31739.1| Peptidase S14, ClpP [Xylella fastidiosa Ann-1]
 gi|167964525|gb|ACA11535.1| Endopeptidase Clp [Xylella fastidiosa M12]
          Length = 208

 Score =  271 bits (693), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 121/193 (62%), Positives = 161/193 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           L LVPMVVEQT+RGER+YDIYSRLLKER++F+ G I+D+MA LI AQLLFLEAENP+K+I
Sbjct: 8   LNLVPMVVEQTSRGERAYDIYSRLLKERLIFLVGPIDDYMANLIVAQLLFLEAENPEKDI 67

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           ++YINSPGGVVTAGMAIYDTMQ+IKP +ST C+GQAASMG+LLL++G  G R+ALPN+R+
Sbjct: 68  NIYINSPGGVVTAGMAIYDTMQYIKPAVSTICVGQAASMGALLLASGASGKRYALPNSRV 127

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+D++ HA++I+ ++ RLNEI  K+ G++ E +    +RD+  SA +A
Sbjct: 128 MIHQPLGGFQGQATDVDIHAREILALRARLNEILAKHTGQSLETIAHDTERDNFKSAVDA 187

Query: 196 CDWGVVDKVLMSR 208
             +G+VD+V   R
Sbjct: 188 QAYGLVDQVFGQR 200


>gi|71901066|ref|ZP_00683176.1| Peptidase S14, ClpP [Xylella fastidiosa Ann-1]
 gi|71729193|gb|EAO31314.1| Peptidase S14, ClpP [Xylella fastidiosa Ann-1]
          Length = 208

 Score =  271 bits (693), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 121/193 (62%), Positives = 161/193 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           L LVPMVVEQT+RGER+YDIYSRLLKER++F+ G I+D+MA L+ AQLLFLEAENP+K+I
Sbjct: 8   LNLVPMVVEQTSRGERAYDIYSRLLKERLIFLVGPIDDYMANLVVAQLLFLEAENPEKDI 67

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           ++YINSPGGVVTAGMAIYDTMQ+IKP +ST C+GQAASMG+LLL++G  G R+ALPN+R+
Sbjct: 68  NIYINSPGGVVTAGMAIYDTMQYIKPAVSTICVGQAASMGALLLASGASGKRYALPNSRV 127

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DI+ HA++I+ ++ RLNEI  K+ G++ E +    +RD+  SA +A
Sbjct: 128 MIHQPLGGFQGQATDIDIHAREILALRARLNEILAKHTGQSLETIAHDTERDNFKSAVDA 187

Query: 196 CDWGVVDKVLMSR 208
             +G+VD+V   R
Sbjct: 188 QAYGLVDQVFGQR 200


>gi|330431763|gb|AEC16822.1| ATP-dependent Clp protease proteolytic subunit [Gallibacterium
           anatis UMN179]
          Length = 195

 Score =  271 bits (693), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 126/193 (65%), Positives = 157/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT RGER++DIYSRLLKER++F+ GQ+ED+MA LI AQLLFLEAENP ++I
Sbjct: 1   MALVPMVVEQTARGERAFDIYSRLLKERVIFLNGQVEDNMANLIVAQLLFLEAENPDEDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGGVVTAGMAIYDTMQFIKP + T CMGQA SMG+ LL+ G  G RFALP+ARI
Sbjct: 61  NLYINSPGGVVTAGMAIYDTMQFIKPDVRTLCMGQACSMGAFLLAGGAAGKRFALPHARI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG+ GQASDI+ HAQ+I+KIK  LN+    + G+  E VE+  DRD+ MSA  A
Sbjct: 121 MIHQPLGGYRGQASDIQIHAQEILKIKDTLNQRLAFHTGQPLEVVERDTDRDNFMSAQAA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++D+VL  R
Sbjct: 181 KEYGLIDEVLTHR 193


>gi|255321158|ref|ZP_05362324.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter
           radioresistens SK82]
 gi|262380154|ref|ZP_06073309.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter
           radioresistens SH164]
 gi|255301712|gb|EET80963.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter
           radioresistens SK82]
 gi|262298348|gb|EEY86262.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter
           radioresistens SH164]
          Length = 201

 Score =  271 bits (692), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 123/192 (64%), Positives = 159/192 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVP+VVEQ++RGERS+DI+SRLL+ER++F+TG++ED+MA LI AQ+LFLEAENP K+I 
Sbjct: 9   ALVPVVVEQSSRGERSFDIFSRLLRERVIFLTGEVEDNMANLIVAQMLFLEAENPDKDIH 68

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGMAIYDTMQFIKP + T+CMGQAASMG+ LL+AG KG RF L NAR++
Sbjct: 69  LYINSPGGSVTAGMAIYDTMQFIKPDVVTYCMGQAASMGAFLLNAGAKGKRFCLENARVM 128

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+ IK RLN +  ++ G+ YE + +  DRD+ M+A  A 
Sbjct: 129 IHQPLGGFRGQASDIEIHAREILFIKERLNRLMAEHSGQDYERIARDTDRDNFMTAQAAK 188

Query: 197 DWGVVDKVLMSR 208
           ++G+VD+VL  R
Sbjct: 189 EYGLVDEVLSKR 200


>gi|325294216|ref|YP_004280730.1| ATP-dependent Clp protease proteolytic subunit [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325064664|gb|ADY72671.1| ATP-dependent Clp protease proteolytic subunit [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 200

 Score =  271 bits (692), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 123/197 (62%), Positives = 163/197 (82%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E++    VP+V+EQT RGER+YDIYSRLLK+RI+ +   I+DH+A LI AQLLFLEAE+P
Sbjct: 2   EEILNQFVPIVIEQTGRGERAYDIYSRLLKDRIIMLGTPIDDHVANLIVAQLLFLEAEDP 61

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+I LYINSPGGVVTAG+AIYDTMQ+IKP + T C+GQAASMG++LL+AG KG RFALP
Sbjct: 62  EKDIYLYINSPGGVVTAGLAIYDTMQYIKPDVVTICLGQAASMGAVLLAAGAKGKRFALP 121

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           +ARI++HQP GGF GQA+DIE HA++I+++K+ LNEI  K+ G++  ++EK  +RD+ MS
Sbjct: 122 HARIMIHQPLGGFQGQATDIEIHAKEILRLKKMLNEILSKHTGQSLRKIEKDTERDYFMS 181

Query: 192 ASEACDWGVVDKVLMSR 208
           A EA  +G++DKVL  R
Sbjct: 182 AEEAQKYGLIDKVLTRR 198


>gi|148244363|ref|YP_001219057.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Vesicomyosocius okutanii HA]
 gi|166214721|sp|A5CXJ8|CLPP_VESOH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|146326190|dbj|BAF61333.1| ATP-dependent Clp protease proteolytic subunit ClpP [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 198

 Score =  271 bits (692), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 123/193 (63%), Positives = 158/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           L  +P+VVEQ+ RGER+YDIYSRLLKERI+F+ G IED+MA ++ AQLLFLE+ENP K+I
Sbjct: 6   LNQIPIVVEQSARGERAYDIYSRLLKERIIFLVGPIEDYMANVVVAQLLFLESENPDKDI 65

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG V+AG+AIYDTMQFIK  IST C+GQAASMG+LLL+AG KG RFALPN R 
Sbjct: 66  HLYINSPGGSVSAGLAIYDTMQFIKSDISTLCIGQAASMGALLLTAGTKGKRFALPNVRC 125

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGFSGQASD++ HAQ+I+K++  LN+I+  + G+  + ++K  DRD+ MSA EA
Sbjct: 126 MIHQPLGGFSGQASDVDIHAQEILKVRANLNQIFKLHTGQVIKTIQKDTDRDNFMSADEA 185

Query: 196 CDWGVVDKVLMSR 208
             +G++DKVL  R
Sbjct: 186 TKYGLIDKVLAKR 198


>gi|237745591|ref|ZP_04576071.1| ATP-dependent Clp protease [Oxalobacter formigenes HOxBLS]
 gi|229376942|gb|EEO27033.1| ATP-dependent Clp protease [Oxalobacter formigenes HOxBLS]
          Length = 207

 Score =  271 bits (692), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 121/193 (62%), Positives = 159/193 (82%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG++PMV+EQ+ RGER++DIYSRLLKERI+F+ G + D  A LI AQLLFLE+ENP+K+I
Sbjct: 14  LGMIPMVIEQSGRGERAFDIYSRLLKERIIFLVGPVTDQNANLIVAQLLFLESENPEKDI 73

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG V+AGMAIYDTMQFI+P +ST C G AASMG+ LL+AG KG RF+LPN+RI
Sbjct: 74  SLYINSPGGSVSAGMAIYDTMQFIRPQVSTLCTGLAASMGAFLLAAGAKGKRFSLPNSRI 133

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+DIE HA++I+ ++ RLN I  +N GK  E++ +  +RD+ MSA+EA
Sbjct: 134 MIHQPSGGAQGQATDIEIHAREILYLRERLNGILAENTGKPVEQIARDTERDNFMSAAEA 193

Query: 196 CDWGVVDKVLMSR 208
            D+G++D+VL  R
Sbjct: 194 KDYGLIDEVLTRR 206


>gi|304311290|ref|YP_003810888.1| ATP-dependent Clp protease proteolytic subunit [gamma
           proteobacterium HdN1]
 gi|301797023|emb|CBL45236.1| ATP-dependent Clp protease proteolytic subunit [gamma
           proteobacterium HdN1]
          Length = 189

 Score =  271 bits (692), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 124/189 (65%), Positives = 157/189 (83%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MV+EQT RGERS+DIYSRLLKER++F+ GQ+EDHMA LI AQLLFLE+ENP K+I LYIN
Sbjct: 1   MVIEQTARGERSFDIYSRLLKERLIFMVGQVEDHMANLIVAQLLFLESENPDKDIHLYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGG VTAGM+IYDTMQFIK  +ST C+GQA SMG+ LL+AG  G R+ALPN+R+++HQP
Sbjct: 61  SPGGSVTAGMSIYDTMQFIKADVSTICVGQACSMGAFLLAAGAPGKRYALPNSRVMIHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            GGF GQASDIE HA++I+ +KRRLNE+  K+ G+  E+VE   DRD+ MSA +A ++G+
Sbjct: 121 LGGFQGQASDIEIHAREIITMKRRLNEMLAKHSGQPIEKVEGDTDRDNFMSAFDAKEYGL 180

Query: 201 VDKVLMSRI 209
           VD+VL  R+
Sbjct: 181 VDQVLEKRV 189


>gi|251798425|ref|YP_003013156.1| ATP-dependent Clp protease proteolytic subunit ClpP [Paenibacillus
           sp. JDR-2]
 gi|247546051|gb|ACT03070.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
           sp. JDR-2]
          Length = 195

 Score =  270 bits (691), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 123/194 (63%), Positives = 160/194 (82%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQTNRGERSYDIYSRLLK+RI+F+   I+D +A  + AQLLFL A++P+K+I
Sbjct: 1   MNLVPIVVEQTNRGERSYDIYSRLLKDRIIFLGSAIDDDVANSVIAQLLFLAADDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMAIYDTMQ+IKP +ST CMG AASMGSLLL+AG KG RFALPNA +
Sbjct: 61  HLYINSPGGSVTAGMAIYDTMQYIKPDVSTICMGMAASMGSLLLTAGAKGKRFALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDI+ HA  I+K K++LNEIYV+  G+ YE++++  DRD+ MSA +A
Sbjct: 121 MIHQPLGGVRGQASDIKIHADWILKTKQKLNEIYVERTGQPYEKIDRDTDRDNFMSAEDA 180

Query: 196 CDWGVVDKVLMSRI 209
            ++G++DKV+ + +
Sbjct: 181 LNYGLIDKVITTPV 194


>gi|294627913|ref|ZP_06706492.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|292597827|gb|EFF41985.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
          Length = 208

 Score =  270 bits (691), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 122/193 (63%), Positives = 162/193 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           L LVPMVVEQT+RGER+YDIYS LLKER++F+ G I+DHMA +I AQLLFLEA+NP+K+I
Sbjct: 8   LNLVPMVVEQTSRGERAYDIYSCLLKERLIFLVGPIDDHMANVIVAQLLFLEADNPEKDI 67

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGGVVTAGMAIYDTMQ+IKP +ST C+GQAASMG+LLL++G  G R+ALPN+R+
Sbjct: 68  SIYINSPGGVVTAGMAIYDTMQYIKPDVSTICVGQAASMGALLLASGAAGKRYALPNSRV 127

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DI+ HA++I+ ++ RLNEI  K+ G++ E + +  +RD+  SA +A
Sbjct: 128 MIHQPLGGFQGQATDIDIHAREILTLRSRLNEILAKHTGQSLETIARDTERDNFKSAVDA 187

Query: 196 CDWGVVDKVLMSR 208
             +G+VD+VL  R
Sbjct: 188 QAYGLVDQVLERR 200


>gi|33151467|ref|NP_872820.1| ATP-dependent Clp protease proteolytic subunit ClpP [Haemophilus
           ducreyi 35000HP]
 gi|60389738|sp|Q7VP78|CLPP_HAEDU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|33147687|gb|AAP95209.1| ATP-dependent Clp protease proteolytic subunit ClpP [Haemophilus
           ducreyi 35000HP]
          Length = 197

 Score =  270 bits (691), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 122/196 (62%), Positives = 161/196 (82%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++PMVVEQT++GERSYDIYSRLLKERI+F+ G++EDHMA LI AQLLFLEAE+P+K+I
Sbjct: 1   MAVIPMVVEQTSKGERSYDIYSRLLKERIIFLNGEVEDHMANLIVAQLLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVTAG+AIYDTM FIKP ++T C GQA SMG+ LLS G+KG RFALPNAR+
Sbjct: 61  YLYINSPGGVVTAGLAIYDTMNFIKPDVATLCTGQACSMGAFLLSGGKKGKRFALPNARV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+  AQ+I+K+K  L     ++ G+T+ +V    +RD+ MSA+EA
Sbjct: 121 MIHQPLGGARGQATDIQIQAQEILKLKEMLTRKMAEHSGQTFAKVAADTERDNFMSATEA 180

Query: 196 CDWGVVDKVLMSRIDI 211
            ++G++DKVL SR ++
Sbjct: 181 KNYGLIDKVLTSRGEV 196


>gi|253996690|ref|YP_003048754.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylotenera
           mobilis JLW8]
 gi|253983369|gb|ACT48227.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylotenera
           mobilis JLW8]
          Length = 214

 Score =  270 bits (691), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 119/193 (61%), Positives = 160/193 (82%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG +PMV+EQ+ RGERS+DIYSRLLKER++F+ G + D  A L+ AQLLFLEAENP K+I
Sbjct: 18  LGYIPMVIEQSGRGERSFDIYSRLLKERVIFLVGPVNDMSANLVVAQLLFLEAENPDKDI 77

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG VTAGM+IYDTMQFIKP +ST C+GQAASMG+ LL+AG K  R++LPN+RI
Sbjct: 78  SLYINSPGGSVTAGMSIYDTMQFIKPDVSTLCIGQAASMGAFLLAAGAKDKRYSLPNSRI 137

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGGF GQ+SDIE HA++I+ ++ +LN+I   + G+T EE+++  +RD+ MSA ++
Sbjct: 138 MIHQPSGGFQGQSSDIEIHAKEILYLRAKLNDILAHHTGRTAEEIDRDTERDNFMSAEQS 197

Query: 196 CDWGVVDKVLMSR 208
             +G++DKV+ SR
Sbjct: 198 VAYGLIDKVIGSR 210


>gi|50083772|ref|YP_045282.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter sp.
           ADP1]
 gi|60389584|sp|Q6FEP8|CLPP_ACIAD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|49529748|emb|CAG67460.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           (Caseinolytic protease) (Protease Ti) (Heat shock
           protein F21.5) [Acinetobacter sp. ADP1]
          Length = 201

 Score =  270 bits (691), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 123/192 (64%), Positives = 159/192 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVP+VVEQ++RGERS+DI+SRLL+ER++F+TG++ED+MA LI AQ+LFLEAENP K+I 
Sbjct: 9   ALVPVVVEQSSRGERSFDIFSRLLRERVIFLTGEVEDNMANLIVAQMLFLEAENPDKDIH 68

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGMAIYDTMQFIKP + T+CMGQAASMG+ LL+AG KG R+ L NAR++
Sbjct: 69  LYINSPGGSVTAGMAIYDTMQFIKPDVVTYCMGQAASMGAFLLNAGAKGKRYCLENARVM 128

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+ IK RLN +  ++ G+ YE V +  DRD+ M+A  A 
Sbjct: 129 IHQPLGGFRGQASDIEIHAREILFIKERLNRLMAEHSGQDYERVARDTDRDNFMTAQAAK 188

Query: 197 DWGVVDKVLMSR 208
           ++G+VD+VL  R
Sbjct: 189 EYGLVDEVLSKR 200


>gi|157370220|ref|YP_001478209.1| ATP-dependent Clp protease proteolytic subunit [Serratia
           proteamaculans 568]
 gi|157321984|gb|ABV41081.1| Endopeptidase Clp [Serratia proteamaculans 568]
          Length = 197

 Score =  270 bits (690), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 122/191 (63%), Positives = 152/191 (79%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQT++GERS+DIYSRLL++RIVF+ G++ D +A ++CAQLLFLEAENP+K I L
Sbjct: 7   LVPMVVEQTSQGERSFDIYSRLLRDRIVFLNGEVNDQIAEVLCAQLLFLEAENPEKPIHL 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+T+G AIYDTM +I  P+ T CMG A SMGS LL AGE G R  LPNA + +
Sbjct: 67  YINSPGGVITSGFAIYDTMNYINAPVHTLCMGTARSMGSFLLMAGEAGHRMVLPNASLHV 126

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQASDI  HA+++ + K  +  +Y K+CG++YEEVE+ LDRDH MSA EA +
Sbjct: 127 HQPLGGFQGQASDILIHAEEMKRTKHSVITLYAKHCGRSYEEVERALDRDHFMSADEAVE 186

Query: 198 WGVVDKVLMSR 208
           WG+VDKVL  R
Sbjct: 187 WGLVDKVLRGR 197


>gi|27375722|ref|NP_767251.1| ATP-dependent Clp protease proteolytic subunit [Bradyrhizobium
           japonicum USDA 110]
 gi|67460544|sp|Q89WR7|CLPP1_BRAJA RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|27348860|dbj|BAC45876.1| ATP-dependent protease proteolytic subunit [Bradyrhizobium
           japonicum USDA 110]
          Length = 200

 Score =  270 bits (690), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 121/193 (62%), Positives = 154/193 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           L LVPMVVEQ+ RGERS+DIYSRLL+ERI+F+ G++ D M+ L+CAQLLFLEAENP + I
Sbjct: 5   LQLVPMVVEQSARGERSFDIYSRLLRERIIFLNGEVNDAMSGLVCAQLLFLEAENPNRPI 64

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINS GGVVT+G+A+YDTMQFIK P+ T CMG A SMGS LL AGE+G R ALPNA +
Sbjct: 65  NLYINSYGGVVTSGLAMYDTMQFIKAPVHTLCMGTARSMGSFLLMAGERGHRAALPNASL 124

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
            +HQP GGF GQASDI  HA ++ + KRR+  +Y ++CG+T  EVE+TLDRDH M+A + 
Sbjct: 125 HVHQPLGGFQGQASDILIHANEMQETKRRITRLYAQHCGRTEAEVERTLDRDHFMTAQQG 184

Query: 196 CDWGVVDKVLMSR 208
            +WG++D+V   R
Sbjct: 185 VEWGLIDRVFAER 197


>gi|169634426|ref|YP_001708162.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter
           baumannii SDF]
 gi|169797267|ref|YP_001715060.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter
           baumannii AYE]
 gi|184156807|ref|YP_001845146.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter
           baumannii ACICU]
 gi|213155939|ref|YP_002317984.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter
           baumannii AB0057]
 gi|215484708|ref|YP_002326943.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter
           baumannii AB307-0294]
 gi|239500790|ref|ZP_04660100.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter
           baumannii AB900]
 gi|260549098|ref|ZP_05823319.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter sp.
           RUH2624]
 gi|260556149|ref|ZP_05828368.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter
           baumannii ATCC 19606]
 gi|294836355|ref|ZP_06781038.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter sp.
           6013113]
 gi|294841889|ref|ZP_06786572.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter sp.
           6014059]
 gi|294857705|ref|ZP_06795474.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter sp.
           6013150]
 gi|301346762|ref|ZP_07227503.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter
           baumannii AB056]
 gi|301512252|ref|ZP_07237489.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter
           baumannii AB058]
 gi|301594241|ref|ZP_07239249.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter
           baumannii AB059]
 gi|169150194|emb|CAM88088.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           (Caseinolytic protease) (Protease Ti) (Heat shock
           protein F21.5) [Acinetobacter baumannii AYE]
 gi|169153218|emb|CAP02314.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           (Caseinolytic protease) (Protease Ti) (Heat shock
           protein F21.5) [Acinetobacter baumannii]
 gi|183208401|gb|ACC55799.1| Protease subunit of ATP-dependent Clp protease [Acinetobacter
           baumannii ACICU]
 gi|193076289|gb|ABO10931.2| ATP-dependent Clp protease proteolytic subunit [Acinetobacter
           baumannii ATCC 17978]
 gi|213055099|gb|ACJ40001.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter
           baumannii AB0057]
 gi|213988734|gb|ACJ59033.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter
           baumannii AB307-0294]
 gi|260407826|gb|EEX01298.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter sp.
           RUH2624]
 gi|260410204|gb|EEX03503.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter
           baumannii ATCC 19606]
 gi|322506699|gb|ADX02153.1| clpP [Acinetobacter baumannii 1656-2]
 gi|323516573|gb|ADX90954.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter
           baumannii TCDC-AB0715]
          Length = 201

 Score =  270 bits (690), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 122/192 (63%), Positives = 159/192 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVP+VVEQ++RGERS+DIYSRLL+ER++F+TG++ED+MA LI AQ+LFLEAENP K+I 
Sbjct: 9   ALVPVVVEQSSRGERSFDIYSRLLRERVIFLTGEVEDNMANLIVAQMLFLEAENPDKDIH 68

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGMAIYDTMQFIKP + T+CMGQAASMG+ LL+AG KG R+ L NAR++
Sbjct: 69  LYINSPGGSVTAGMAIYDTMQFIKPDVVTYCMGQAASMGAFLLNAGAKGKRYCLENARVM 128

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+ IK RLN +  ++ G+ Y+ + +  DRD+ M+A  A 
Sbjct: 129 IHQPLGGFRGQASDIEIHAREILFIKERLNRLMAEHSGQDYDTIARDTDRDNFMTAQAAK 188

Query: 197 DWGVVDKVLMSR 208
           ++G+VD+VL  R
Sbjct: 189 EYGLVDQVLSKR 200


>gi|74317695|ref|YP_315435.1| ATP-dependent Clp protease proteolytic subunit ClpP [Thiobacillus
           denitrificans ATCC 25259]
 gi|90183186|sp|Q3SI98|CLPP_THIDA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|74057190|gb|AAZ97630.1| peptidase S14, ClpP [Thiobacillus denitrificans ATCC 25259]
          Length = 212

 Score =  270 bits (690), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 122/193 (63%), Positives = 158/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LGLVPMVVEQ+ RGER+YDIYSRLLKER++F+ G + D  A LI AQ+LFLE+ENP K+I
Sbjct: 15  LGLVPMVVEQSGRGERAYDIYSRLLKERVIFLVGPVNDATANLIVAQMLFLESENPDKDI 74

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG V+AG+AIYDTMQFIKP +ST C+GQAASMG+ LL+AG KG R+ LPN+R+
Sbjct: 75  YLYINSPGGSVSAGLAIYDTMQFIKPDVSTLCIGQAASMGAFLLTAGAKGKRYCLPNSRV 134

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQASDIE HA++I+ +K RLN +  K+ G++ E +++  DRD+ MSA ++
Sbjct: 135 MIHQPLGGFQGQASDIEIHAKEILYLKARLNGMLAKHTGQSLEVIDRDTDRDNFMSAEDS 194

Query: 196 CDWGVVDKVLMSR 208
             +G+VDKVL SR
Sbjct: 195 VKYGLVDKVLTSR 207


>gi|330814219|ref|YP_004358458.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Pelagibacter sp. IMCC9063]
 gi|327487314|gb|AEA81719.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Pelagibacter sp. IMCC9063]
          Length = 204

 Score =  270 bits (690), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 123/201 (61%), Positives = 164/201 (81%), Gaps = 1/201 (0%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           KD  D+++  LVPMVVEQT RGER+YDIYSRLLKERI+F+ G I   +++LI AQLLFLE
Sbjct: 2   KDPIDIYMNTLVPMVVEQTPRGERAYDIYSRLLKERIIFLVGPINSQVSSLISAQLLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           +EN  KEI +YINSPGG+VT G+AIYDTMQ+IKP ++T C+GQA SMGS LL+AGEKG R
Sbjct: 62  SENNSKEIFMYINSPGGIVTDGLAIYDTMQYIKPAVATLCIGQACSMGSFLLAAGEKGQR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
            +LPN+R+++HQPS GF GQA+DIE HA +I++ K++LNEIY K+ G++ E++++ L+RD
Sbjct: 122 MSLPNSRVMVHQPSAGFQGQATDIEIHANEIMQTKKKLNEIYSKHTGQSVEKIKEALERD 181

Query: 188 HIMSASEACDWGVVDKVLMSR 208
             MSA EA  +G++DKV+  R
Sbjct: 182 KFMSAEEAKAFGLIDKVVEKR 202


>gi|307822658|ref|ZP_07652889.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylobacter
           tundripaludum SV96]
 gi|307736262|gb|EFO07108.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylobacter
           tundripaludum SV96]
          Length = 215

 Score =  270 bits (690), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 120/198 (60%), Positives = 165/198 (83%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVP+V+EQT RGERS+DIYSRLLKER++F+ GQ+ED+ A LI AQLLFLE+ENP K+I 
Sbjct: 18  GLVPIVIEQTARGERSFDIYSRLLKERVIFLVGQVEDYSANLIVAQLLFLESENPDKDIH 77

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQAASMG+LLL+ G KG R+ LP++R++
Sbjct: 78  LYINSPGGSVTAGMSIYDTMQFIKPDVSTMCIGQAASMGALLLAGGAKGKRYCLPHSRMM 137

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG+ GQASDI+ HA++I+ I+ +LN+I   + G+  E+V++  DRD+ +SA++A 
Sbjct: 138 IHQPLGGYQGQASDIDIHAREILLIREKLNKILSDHTGQPMEKVQQDTDRDNFLSANDAV 197

Query: 197 DWGVVDKVLMSRIDIEEK 214
            +G++D+VL+SR  + +K
Sbjct: 198 SYGLIDQVLLSRATVADK 215


>gi|163751869|ref|ZP_02159083.1| ATP-dependent Clp protease proteolytic subunit [Shewanella benthica
           KT99]
 gi|161328219|gb|EDP99383.1| ATP-dependent Clp protease proteolytic subunit [Shewanella benthica
           KT99]
          Length = 203

 Score =  270 bits (689), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 122/194 (62%), Positives = 158/194 (81%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E VF  LVPMVVEQT +GERSYDIYSRLLKERI+F+ G +E+HMA L+ AQLLFLE+E+P
Sbjct: 6   ESVFNALVPMVVEQTAKGERSYDIYSRLLKERIIFLVGPVEEHMANLVVAQLLFLESESP 65

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+I LYINSPGG VTAGMAIYDTMQFIKP +ST C+GQAASMG+ LL+ G  G R  LP
Sbjct: 66  DKDIFLYINSPGGSVTAGMAIYDTMQFIKPDVSTVCIGQAASMGAFLLAGGAAGKRHCLP 125

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+R+++HQP GGF GQASDI  HAQ+I+ IK +LN++  ++ G++ E +E+  DRD+ MS
Sbjct: 126 NSRVMIHQPLGGFQGQASDIAIHAQEILGIKDKLNQMLAEHTGQSLEVIERDTDRDNFMS 185

Query: 192 ASEACDWGVVDKVL 205
           A++A ++G++D V+
Sbjct: 186 AAQAAEYGLIDSVM 199


>gi|253999170|ref|YP_003051233.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylovorus
           sp. SIP3-4]
 gi|313201272|ref|YP_004039930.1| ATP-dependent clp protease, proteolytic subunit clpp [Methylovorus
           sp. MP688]
 gi|253985849|gb|ACT50706.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylovorus
           sp. SIP3-4]
 gi|312440588|gb|ADQ84694.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylovorus
           sp. MP688]
          Length = 208

 Score =  270 bits (689), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 121/195 (62%), Positives = 158/195 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG +PMV+EQ+ RGER+YDIYSRLL+ER++F+ G + D  A L+ AQLLFLEAENP K+I
Sbjct: 12  LGYIPMVIEQSGRGERAYDIYSRLLRERVIFLVGPVNDMTANLVVAQLLFLEAENPDKDI 71

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG VTAGMAIYDTMQFIKP +ST C+GQAASMG+LLL+AG K  RF LPN+R+
Sbjct: 72  SLYINSPGGSVTAGMAIYDTMQFIKPDVSTLCIGQAASMGALLLTAGAKDKRFCLPNSRV 131

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQASDIE HA++I+ ++ +LN I   + G+  + +E+  DRD+ MSA ++
Sbjct: 132 MIHQPLGGFQGQASDIEIHAKEILYLREKLNLILASHTGQPVDVIERDTDRDNFMSAQQS 191

Query: 196 CDWGVVDKVLMSRID 210
            ++G+VDKV+ SR D
Sbjct: 192 VNYGLVDKVIASRTD 206


>gi|145628436|ref|ZP_01784237.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae 22.1-21]
 gi|145633845|ref|ZP_01789567.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae 3655]
 gi|145637965|ref|ZP_01793604.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae PittHH]
 gi|145639474|ref|ZP_01795079.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae PittII]
 gi|148826642|ref|YP_001291395.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae PittEE]
 gi|148827882|ref|YP_001292635.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae PittGG]
 gi|229845547|ref|ZP_04465675.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae 6P18H1]
 gi|229847178|ref|ZP_04467282.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae 7P49H1]
 gi|260583375|ref|ZP_05851146.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Haemophilus
           influenzae NT127]
 gi|319775445|ref|YP_004137933.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae F3047]
 gi|166201826|sp|A5UE11|CLPP_HAEIE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166201827|sp|A5UHJ6|CLPP_HAEIG RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|144980211|gb|EDJ89870.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae 22.1-21]
 gi|144985287|gb|EDJ92126.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae 3655]
 gi|145268831|gb|EDK08795.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae PittHH]
 gi|145271521|gb|EDK11433.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae PittII]
 gi|148716802|gb|ABQ99012.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae PittEE]
 gi|148719124|gb|ABR00252.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae PittGG]
 gi|229809854|gb|EEP45576.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae 7P49H1]
 gi|229811563|gb|EEP47264.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae 6P18H1]
 gi|260093580|gb|EEW77497.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Haemophilus
           influenzae NT127]
 gi|309751687|gb|ADO81671.1| ATP-dependent Clp protease proteolytic subunit ClpP [Haemophilus
           influenzae R2866]
 gi|309973789|gb|ADO96990.1| ATP-dependent Clp protease proteolytic subunit ClpP [Haemophilus
           influenzae R2846]
 gi|317450036|emb|CBY86250.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae F3047]
          Length = 193

 Score =  270 bits (689), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 124/193 (64%), Positives = 158/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++PMVVEQT+RGERSYDIYSRLLKER++F++G++ED MA LI AQLLFLE+E+P K+I
Sbjct: 1   MSVIPMVVEQTSRGERSYDIYSRLLKERVIFLSGEVEDRMANLIVAQLLFLESEDPTKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           ++YINSPGG VTAGMAIYDTMQFIKP I T C+GQA SMG+ LL+ G  G R ALPNAR+
Sbjct: 61  NIYINSPGGSVTAGMAIYDTMQFIKPDIRTLCIGQACSMGAFLLAGGTAGKRAALPNARV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQASDI+ HAQ+I+KIK  LN+    + G++ E +EK  DRD+ MSA EA
Sbjct: 121 MIHQPLGGFRGQASDIQIHAQEILKIKHTLNDRLAFHTGQSIERIEKDTDRDNFMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD+VL+ R
Sbjct: 181 QAYGLVDEVLVKR 193


>gi|297250503|ref|ZP_06864443.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
           polysaccharea ATCC 43768]
 gi|296838809|gb|EFH22747.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
           polysaccharea ATCC 43768]
          Length = 209

 Score =  270 bits (689), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 123/197 (62%), Positives = 160/197 (81%), Gaps = 2/197 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ+ RGER++DIYSRLLKERIVF+ G + D  A L+ AQLLFLE+ENP K+I  
Sbjct: 12  LVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFF 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM+IYDTM FIKP +ST C+GQAASMG+ LLSAGEKG RFALPN+RI++
Sbjct: 72  YINSPGGSVTAGMSIYDTMNFIKPDVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMI 131

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASDIE HA++++KIK +LN +  K+CG+   ++E+  DRD+ MSA EA
Sbjct: 132 HQPLISGGLGGQASDIEIHARELLKIKEKLNRLMAKHCGRDLADLERDTDRDNFMSAEEA 191

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G++D+VL +R+ ++
Sbjct: 192 KEYGLIDQVLENRVSLQ 208


>gi|254468869|ref|ZP_05082275.1| ATP-dependent Clp protease, proteolytic subunit ClpP [beta
           proteobacterium KB13]
 gi|207087679|gb|EDZ64962.1| ATP-dependent Clp protease, proteolytic subunit ClpP [beta
           proteobacterium KB13]
          Length = 207

 Score =  270 bits (689), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 125/195 (64%), Positives = 156/195 (80%)

Query: 14  VFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQK 73
           V LG +PMVVEQ+ RGERSYDIYSRLLKER+VF+ G ++D  A L+ AQLLFLEAENP K
Sbjct: 13  VGLGYIPMVVEQSGRGERSYDIYSRLLKERVVFLVGPVDDMTANLVVAQLLFLEAENPDK 72

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +ISLYINSPGG VTAGMAIYDTMQFIKP +ST C+GQAASMG+LLL+AG K  RF LPN+
Sbjct: 73  DISLYINSPGGSVTAGMAIYDTMQFIKPDVSTLCIGQAASMGALLLTAGAKDKRFCLPNS 132

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           R+++HQP GGF GQASDIE HA++I+ +K +LN I   + G+  + + K  DRD+ MS+ 
Sbjct: 133 RVMIHQPLGGFQGQASDIEIHAKEILYLKDKLNRILSHHTGQDIKTISKDTDRDNFMSSE 192

Query: 194 EACDWGVVDKVLMSR 208
           +A  +G+VDKV+  R
Sbjct: 193 DAVKYGLVDKVINER 207


>gi|15888940|ref|NP_354621.1| ATP-dependent Clp protease proteolytic subunit [Agrobacterium
           tumefaciens str. C58]
 gi|21759065|sp|Q8UEX6|CLPP1_AGRT5 RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|15156717|gb|AAK87406.1| ATP-dependent Clp protease, proteolytic subunit [Agrobacterium
           tumefaciens str. C58]
          Length = 202

 Score =  270 bits (689), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 118/193 (61%), Positives = 156/193 (80%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQ++RGERS+DIYSRLL+ERI+F+ G+++D ++ L+CAQLLFLEAENP+K I L
Sbjct: 7   LVPMVVEQSSRGERSFDIYSRLLRERIIFLNGEVDDTVSALVCAQLLFLEAENPKKPIHL 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG+VT+G A+YDTM++I+ P+ T CMG A SMGS LL AGE G R ALPNA IL+
Sbjct: 67  YINSPGGMVTSGFAMYDTMRYIRAPVHTLCMGTARSMGSFLLMAGEPGTRAALPNASILI 126

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGGF GQASD+  HA++I + K R+  +Y ++CG++YEE E  +DRD  M+  EA +
Sbjct: 127 HQPSGGFQGQASDMLIHAEEIRQTKHRMTRLYAEHCGRSYEEFETAMDRDRFMTVQEALE 186

Query: 198 WGVVDKVLMSRID 210
           WG++D++L  R D
Sbjct: 187 WGLIDRILEVRED 199


>gi|254512409|ref|ZP_05124476.1| Clp protease [Rhodobacteraceae bacterium KLH11]
 gi|221536120|gb|EEE39108.1| Clp protease [Rhodobacteraceae bacterium KLH11]
          Length = 196

 Score =  270 bits (689), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 124/188 (65%), Positives = 157/188 (83%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MVVEQT+RGER+YDI+SRLLKERI+F+ G I D M+ L+ AQLL LEAENP KEIS+YIN
Sbjct: 1   MVVEQTSRGERAYDIFSRLLKERIIFINGPIHDGMSHLVVAQLLHLEAENPNKEISIYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGGVVT+G++IYDTMQ+IKP  ST  +GQAASMGS+LL+ GEKGMRF+LPN+RI++HQP
Sbjct: 61  SPGGVVTSGLSIYDTMQYIKPKCSTLVIGQAASMGSVLLAGGEKGMRFSLPNSRIMVHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
           SGG+ GQASDI  HA +  K+K RL +IYV++ G+T + VEK LDRD+ MS  EA DWG 
Sbjct: 121 SGGYQGQASDIMIHAAETQKLKDRLYDIYVRHTGQTKKAVEKALDRDNFMSPEEAKDWGH 180

Query: 201 VDKVLMSR 208
           +D+++ +R
Sbjct: 181 IDEIVENR 188


>gi|15603841|ref|NP_246915.1| ATP-dependent Clp protease proteolytic subunit [Pasteurella
           multocida subsp. multocida str. Pm70]
 gi|18202809|sp|Q9CJM2|CLPP_PASMU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|12722415|gb|AAK04060.1| ClpP [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 193

 Score =  270 bits (689), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 124/193 (64%), Positives = 158/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++PMVVEQT RGERSYDIYSRLLKER++F+ G++ED MA LI AQLLFLE+E+P+K+I
Sbjct: 1   MSVIPMVVEQTARGERSYDIYSRLLKERVIFLGGEVEDRMANLIVAQLLFLESEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           ++YINSPGG VTAGMAIYDTMQF+KP I T C+GQA SMG+ LL+ G  G R ALP+AR+
Sbjct: 61  NIYINSPGGSVTAGMAIYDTMQFVKPDIRTLCVGQACSMGAFLLAGGTAGKRIALPSARV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQASDI+ HAQ+I+KIK+ LNE    + G+T E +E+  DRD+ MSA EA
Sbjct: 121 MIHQPLGGFRGQASDIQIHAQEILKIKQTLNERLAFHTGQTIERIERDTDRDNFMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD+VL SR
Sbjct: 181 KAYGLVDEVLASR 193


>gi|251772219|gb|EES52789.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Leptospirillum ferrodiazotrophum]
          Length = 201

 Score =  269 bits (688), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 124/200 (62%), Positives = 165/200 (82%), Gaps = 1/200 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+PMVVEQTNRGER+YDIYSRLL++RI+ +   I+D +A L+ AQ+LFLE+E+  K+I+L
Sbjct: 2   LIPMVVEQTNRGERAYDIYSRLLRDRIIILGTPIDDTVANLVIAQMLFLESEDSSKDINL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG+VTAG+AIYDT++FIKP +ST C+GQAASMG+ LLSAG KG R+ALPNARI++
Sbjct: 62  YINSPGGIVTAGLAIYDTIKFIKPDVSTICIGQAASMGAFLLSAGAKGKRYALPNARIMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQA+DIE HA++I+K+K  LN +  ++CG+  E+V +  DRD+ MSA EA D
Sbjct: 122 HQPMGGFQGQATDIEIHAREILKLKADLNRMMSEHCGQPVEKVAQDTDRDYFMSAKEAKD 181

Query: 198 WGVVDKVLMS-RIDIEEKSK 216
           +G++D V+ S RID E+ SK
Sbjct: 182 YGLIDSVITSHRIDTEKTSK 201


>gi|332186782|ref|ZP_08388524.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sphingomonas
           sp. S17]
 gi|332013115|gb|EGI55178.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sphingomonas
           sp. S17]
          Length = 229

 Score =  269 bits (688), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 121/192 (63%), Positives = 160/192 (83%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVP+V+EQ+NRGERS+DI+SRLL+ERI+FVTG +ED MA+LICAQLLFLE+ENP+K+I 
Sbjct: 27  GLVPIVIEQSNRGERSFDIFSRLLRERIIFVTGGVEDGMASLICAQLLFLESENPKKDIY 86

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGGVVTAGMAI+DTMQ+I+P + T C+GQAASMGS LL+AGE GMR A  N+RI+
Sbjct: 87  MYINSPGGVVTAGMAIHDTMQYIRPRVGTLCIGQAASMGSFLLAAGEPGMRVATTNSRIM 146

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  G A+DIE  A++I++++  LN +Y K  GK  EE+E+ +DRD  MS+ EA 
Sbjct: 147 IHQPSGGAQGMAADIEIQAREILRMRHFLNSLYAKYTGKPLEEIERAMDRDKFMSSEEAK 206

Query: 197 DWGVVDKVLMSR 208
           ++G++D+V   R
Sbjct: 207 EFGLIDQVFDKR 218


>gi|161486690|ref|YP_719644.2| ATP-dependent Clp protease proteolytic subunit [Haemophilus somnus
           129PT]
          Length = 193

 Score =  269 bits (688), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 123/193 (63%), Positives = 160/193 (82%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++PMVVEQT+RGERSYDIYSRLLKER++F+TG++ED MA LI AQLLFLEAE+P K+I
Sbjct: 1   MSVIPMVVEQTSRGERSYDIYSRLLKERVIFLTGEVEDRMANLIVAQLLFLEAEDPAKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           ++YINSPGG VTAGMAIYDTMQFIKP + T C+GQA SMG+ LL+ G  G R ALP+AR+
Sbjct: 61  NIYINSPGGSVTAGMAIYDTMQFIKPDVRTLCIGQACSMGAFLLAGGTAGKRAALPHARV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQASDI+ HAQ+I+KIK+ LNE    + G++ E++E+  DRD+ MSA +A
Sbjct: 121 MIHQPLGGFRGQASDIQIHAQEILKIKQTLNERLAFHTGQSIEQIEQDTDRDNFMSAEQA 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD+VL+ R
Sbjct: 181 KLYGLVDEVLIKR 193


>gi|150398272|ref|YP_001328739.1| ATP-dependent Clp protease proteolytic subunit [Sinorhizobium
           medicae WSM419]
 gi|150029787|gb|ABR61904.1| Endopeptidase Clp [Sinorhizobium medicae WSM419]
          Length = 205

 Score =  269 bits (687), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 119/197 (60%), Positives = 156/197 (79%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQ++RGERS+DIYSRLL+ERI+F+ G++ D ++ L+CAQLLFLEAE+P K I L
Sbjct: 7   LVPMVVEQSSRGERSFDIYSRLLRERIIFLNGEVNDAVSALVCAQLLFLEAESPTKPIQL 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G A+YDTM++I+ P+ T CMG A SMGS LL AGE G R ALPN  IL+
Sbjct: 67  YINSPGGVVTSGFAMYDTMRYIRAPVHTLCMGTARSMGSFLLMAGEAGGRAALPNTSILV 126

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGGF GQASD+  HA++I + K R+  +Y ++CG+TYEE E+ +DRD  M+A EA +
Sbjct: 127 HQPSGGFQGQASDMLIHAEEIRRTKHRMTRLYAEHCGRTYEEFERAMDRDRFMTAEEALE 186

Query: 198 WGVVDKVLMSRIDIEEK 214
           WG++D +L  R+   E+
Sbjct: 187 WGLIDCILTERVAGAER 203


>gi|145635952|ref|ZP_01791637.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae PittAA]
 gi|319897851|ref|YP_004136048.1| ATP-dependent clp protease proteolytic subunit [Haemophilus
           influenzae F3031]
 gi|145266785|gb|EDK06804.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae PittAA]
 gi|301169432|emb|CBW29032.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Haemophilus influenzae 10810]
 gi|317433357|emb|CBY81736.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae F3031]
          Length = 193

 Score =  269 bits (687), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 124/193 (64%), Positives = 158/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++PMVVEQT+RGERSYDIYSRLLKER++F++G++ED MA LI AQLLFLE+E+P K+I
Sbjct: 1   MSVIPMVVEQTSRGERSYDIYSRLLKERVIFLSGEVEDRMANLIVAQLLFLESEDPTKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           ++YINSPGG VTAGMAIYDTMQFIKP I T C+GQA SMG+ LL+ G  G R ALPNAR+
Sbjct: 61  NIYINSPGGSVTAGMAIYDTMQFIKPDIRTLCIGQACSMGAFLLAGGTAGKRAALPNARV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQASDI+ HAQ+I+KIK  LN+    + G++ E +EK  DRD+ MSA EA
Sbjct: 121 MIHQPLGGFRGQASDIQIHAQEILKIKHTLNDRLAFHTGQSIERIEKDTDRDNFMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD+VL+ R
Sbjct: 181 QVYGLVDEVLVKR 193


>gi|330427935|gb|AEC19269.1| ATP-dependent Clp protease proteolytic subunit [Pusillimonas sp.
           T7-7]
          Length = 218

 Score =  269 bits (687), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 122/195 (62%), Positives = 154/195 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG VP+V+EQ+ RGERSYDIYSRLL+ER++F  G + DH A L+ AQLLFLE+ENP K+I
Sbjct: 22  LGYVPIVIEQSGRGERSYDIYSRLLRERVIFFVGPVNDHTANLVVAQLLFLESENPDKDI 81

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG V AGMAIYDTMQFIKP +ST C G AASMG+ LL+AG KG R+ LPN+RI
Sbjct: 82  SLYINSPGGSVYAGMAIYDTMQFIKPDVSTLCTGIAASMGAFLLAAGAKGKRYTLPNSRI 141

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQASDI+  A++I+ ++ RLN I  KN G+  E + +  +RD+ MSA +A
Sbjct: 142 MIHQPSGGAQGQASDIQIQAREILSLRERLNTILAKNTGQPVERIAEDTERDNFMSAEDA 201

Query: 196 CDWGVVDKVLMSRID 210
             +G+VDKVL+SR D
Sbjct: 202 VSYGLVDKVLVSRAD 216


>gi|32035048|ref|ZP_00135114.1| COG0740: Protease subunit of ATP-dependent Clp proteases
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126208746|ref|YP_001053971.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae L20]
 gi|165976699|ref|YP_001652292.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|307246197|ref|ZP_07528278.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307255177|ref|ZP_07536995.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307257345|ref|ZP_07539115.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307259615|ref|ZP_07541339.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307261756|ref|ZP_07543422.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|166201796|sp|A3N1T0|CLPP_ACTP2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706436|sp|B0BQL3|CLPP_ACTPJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|126097538|gb|ABN74366.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|165876800|gb|ABY69848.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|306852806|gb|EFM85030.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306862050|gb|EFM94026.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306864195|gb|EFM96108.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306866260|gb|EFM98124.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306868574|gb|EFN00385.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 196

 Score =  269 bits (687), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 123/193 (63%), Positives = 157/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQT++GERSYDIYSRLLKERI+F+TGQ+EDHMA LI AQ+LFLEAE+P+K+I
Sbjct: 1   MALVPIVVEQTSKGERSYDIYSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVTAG+AIYDTM FIKP ++T C GQA SMG+ LLS G KG RFALPNAR+
Sbjct: 61  YLYINSPGGVVTAGLAIYDTMNFIKPDVATLCTGQACSMGAFLLSGGAKGKRFALPNARV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+  AQ+I+K+K  L     ++ G+ +E+V    +RD+ MSA EA
Sbjct: 121 MIHQPLGGARGQATDIQIQAQEILKLKEMLTRKMAEHSGQPFEKVAADTERDNFMSAVEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++DKVL  R
Sbjct: 181 MEYGLIDKVLTHR 193


>gi|329122525|ref|ZP_08251109.1| ATP-dependent Clp protease, protease subunit [Haemophilus aegyptius
           ATCC 11116]
 gi|327473154|gb|EGF18577.1| ATP-dependent Clp protease, protease subunit [Haemophilus aegyptius
           ATCC 11116]
          Length = 211

 Score =  269 bits (687), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 124/193 (64%), Positives = 158/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++PMVVEQT+RGERSYDIYSRLLKER++F++G++ED MA LI AQLLFLE+E+P K+I
Sbjct: 19  MSVIPMVVEQTSRGERSYDIYSRLLKERVIFLSGEVEDRMANLIVAQLLFLESEDPTKDI 78

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           ++YINSPGG VTAGMAIYDTMQFIKP I T C+GQA SMG+ LL+ G  G R ALPNAR+
Sbjct: 79  NIYINSPGGSVTAGMAIYDTMQFIKPDIRTLCIGQACSMGAFLLAGGTAGKRAALPNARV 138

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQASDI+ HAQ+I+KIK  LN+    + G++ E +EK  DRD+ MSA EA
Sbjct: 139 MIHQPLGGFRGQASDIQIHAQEILKIKHTLNDRLAFHTGQSIERIEKDTDRDNFMSAEEA 198

Query: 196 CDWGVVDKVLMSR 208
             +G+VD+VL+ R
Sbjct: 199 QVYGLVDEVLVKR 211


>gi|190150599|ref|YP_001969124.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303252091|ref|ZP_07338260.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307248303|ref|ZP_07530328.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307263943|ref|ZP_07545546.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|226706435|sp|B3H252|CLPP_ACTP7 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|189915730|gb|ACE61982.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302649073|gb|EFL79260.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306855173|gb|EFM87351.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306870705|gb|EFN02446.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 196

 Score =  269 bits (687), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 123/193 (63%), Positives = 157/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQT++GERSYDIYSRLLKERI+F+TGQ+EDHMA LI AQ+LFLEAE+P+K+I
Sbjct: 1   MALVPIVVEQTSKGERSYDIYSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVTAG+AIYDTM FIKP ++T C GQA SMG+ LLS G KG RFALPNAR+
Sbjct: 61  YLYINSPGGVVTAGLAIYDTMNFIKPDVATLCTGQACSMGAFLLSGGAKGKRFALPNARV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+  AQ+I+K+K  L     ++ G+ +E+V    +RD+ MSA EA
Sbjct: 121 MIHQPLGGARGQATDIQIQAQEILKLKEMLTRKMAEHSGQPFEKVAADTERDNFMSAVEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++DKVL  R
Sbjct: 181 MEYGLIDKVLTHR 193


>gi|91787906|ref|YP_548858.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Polaromonas
           sp. JS666]
 gi|91697131|gb|ABE43960.1| ATP-dependent Clp protease proteolytic subunit ClpP [Polaromonas
           sp. JS666]
          Length = 218

 Score =  269 bits (687), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 120/193 (62%), Positives = 156/193 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG+VPMV+EQ+ RGERSYDIYSRLLKER++F+ G + D  A L+ AQLLFLE+ENP K+I
Sbjct: 25  LGMVPMVIEQSGRGERSYDIYSRLLKERVIFLVGPVNDQTANLVVAQLLFLESENPDKDI 84

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S YINSPGG VTAGMAIYDTMQFIKP +ST C+G AASMG+ LLSAG KG RF+LPN+R+
Sbjct: 85  SFYINSPGGSVTAGMAIYDTMQFIKPDVSTLCVGMAASMGAFLLSAGAKGKRFSLPNSRV 144

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+DIE HA+DI+K + +LN I   N G+  E++E+  +RD+ + A +A
Sbjct: 145 MIHQPSGGAQGQATDIEIHARDILKTRDQLNRILAANTGQPIEKIERDTERDYFLFAEDA 204

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD+V+  R
Sbjct: 205 KEYGLVDQVISRR 217


>gi|26989024|ref|NP_744449.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas putida
           KT2440]
 gi|148548677|ref|YP_001268779.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas putida
           F1]
 gi|38257487|sp|Q88KJ0|CLPP_PSEPK RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166214701|sp|A5W635|CLPP_PSEP1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|24983847|gb|AAN67913.1|AE016423_8 ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
           putida KT2440]
 gi|148512735|gb|ABQ79595.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pseudomonas
           putida F1]
 gi|171362771|dbj|BAG15849.1| probable ATP-dependent clp protease [Pseudomonas putida]
          Length = 213

 Score =  269 bits (687), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 121/192 (63%), Positives = 155/192 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+EQ+ RGER+YDIYSRLLKER++F+ G +ED+MA L+ AQLLFLEAENP K+I 
Sbjct: 18  GLVPMVIEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLVVAQLLFLEAENPDKDIH 77

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+ LL+AG KG R  LPN+R++
Sbjct: 78  LYINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAAGAKGKRHCLPNSRVM 137

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQA+DIE HAQ+I+ IK RLNE+   + G+  E +++  +RD+ MSAS A 
Sbjct: 138 IHQPLGGFQGQATDIEIHAQEILNIKARLNELLAYHTGQDLETIKRDTERDNFMSASRAA 197

Query: 197 DWGVVDKVLMSR 208
           ++G++D V   R
Sbjct: 198 EYGLIDSVYDKR 209


>gi|254448838|ref|ZP_05062294.1| ATP-dependent Clp protease, proteolytic subunit ClpP [gamma
           proteobacterium HTCC5015]
 gi|198261528|gb|EDY85817.1| ATP-dependent Clp protease, proteolytic subunit ClpP [gamma
           proteobacterium HTCC5015]
          Length = 236

 Score =  269 bits (687), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 121/191 (63%), Positives = 158/191 (82%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQ+ RGER++DIYSRLLKER++F+ GQ+E+HMA LI AQLLFLEA+NP K+ISL
Sbjct: 46  LVPMVVEQSARGERAFDIYSRLLKERVIFMVGQVEEHMANLIVAQLLFLEADNPDKDISL 105

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGMAIYDTM+FIKP +ST C+GQAASMG+ LLS G KG RFALPN+ +++
Sbjct: 106 YINSPGGSVTAGMAIYDTMRFIKPDVSTLCIGQAASMGAFLLSGGAKGKRFALPNSSVMI 165

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQA+DI+ HA++I+K K +LN +   + G+ +E V +  +RD+ M A EA +
Sbjct: 166 HQPLGGFQGQATDIDIHARNILKTKEKLNRMLADHTGQPFERVVEDTERDNFMGADEAKE 225

Query: 198 WGVVDKVLMSR 208
           +G++D VL++R
Sbjct: 226 YGLIDDVLVTR 236


>gi|294141768|ref|YP_003557746.1| ATP-dependent Clp protease, proteolytic subunit [Shewanella
           violacea DSS12]
 gi|293328237|dbj|BAJ02968.1| ATP-dependent Clp protease, proteolytic subunit [Shewanella
           violacea DSS12]
          Length = 203

 Score =  269 bits (687), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 123/194 (63%), Positives = 156/194 (80%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E V   LVPMVVEQT +GERSYDIYSRLLKERI+F+ G +E+HMA L+ AQLLFLE+E+P
Sbjct: 6   ESVLNALVPMVVEQTAKGERSYDIYSRLLKERIIFLVGPVEEHMANLVVAQLLFLESESP 65

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+I LYINSPGG VTAGMAIYDTMQFIKP +ST C+GQAASMG+ LL+ G  G R  LP
Sbjct: 66  DKDIFLYINSPGGSVTAGMAIYDTMQFIKPDVSTVCIGQAASMGAFLLAGGAAGKRHCLP 125

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+R+++HQP GGF GQASDI  HAQ+I+ IK +LNE+  ++ G+  E +E+  DRD+ MS
Sbjct: 126 NSRVMIHQPLGGFQGQASDIAIHAQEILGIKNKLNEMLAEHTGQPLEVIERDTDRDNFMS 185

Query: 192 ASEACDWGVVDKVL 205
           A++A ++G+VD V+
Sbjct: 186 AAQAAEYGLVDSVM 199


>gi|153007825|ref|YP_001369040.1| ATP-dependent Clp protease proteolytic subunit [Ochrobactrum
           anthropi ATCC 49188]
 gi|151559713|gb|ABS13211.1| Endopeptidase Clp [Ochrobactrum anthropi ATCC 49188]
          Length = 202

 Score =  269 bits (687), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 118/191 (61%), Positives = 156/191 (81%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQ++RGERS+DIYSRLL+ERI+F+ G++ D ++ LICAQLLFLEAEN ++ I+L
Sbjct: 7   LVPMVVEQSSRGERSFDIYSRLLRERIIFLNGEVNDTVSALICAQLLFLEAENSKQPINL 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G+AIYDTM++++ P+ T CMG A SMGS LL AGE G R ALPNA +L+
Sbjct: 67  YINSPGGVVTSGLAIYDTMRYVRAPVHTLCMGTARSMGSFLLMAGEPGHRAALPNANLLV 126

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGGF GQASDI  HA++  + KR +  +Y ++CG+TYEEVE+ LDRD+ M+A    +
Sbjct: 127 HQPSGGFQGQASDIFIHAEEAQRTKRLMTRLYAEHCGRTYEEVERALDRDNFMTAEAGLE 186

Query: 198 WGVVDKVLMSR 208
           WG++D++L  R
Sbjct: 187 WGLIDRILERR 197


>gi|323697668|ref|ZP_08109580.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
           sp. ND132]
 gi|323457600|gb|EGB13465.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
           desulfuricans ND132]
          Length = 202

 Score =  269 bits (687), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 120/198 (60%), Positives = 162/198 (81%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +PMV+E T R ER+YDIYSRLLK+RI+ +   I+DH+A+LICAQLLFLE+E+P+KEI +Y
Sbjct: 4   IPMVIETTGRTERAYDIYSRLLKDRIILLGTAIDDHVASLICAQLLFLESEDPEKEIYMY 63

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGVVT+GMAIYDTMQ+I  P++T CMGQAASM SLLL AGEKGMR++LP++RIL+H
Sbjct: 64  INSPGGVVTSGMAIYDTMQYISAPVATLCMGQAASMASLLLCAGEKGMRYSLPHSRILIH 123

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQASDI  HA++I+++K  LN I  ++ G++ E++    DRD+ MS+ EA ++
Sbjct: 124 QPLGGAQGQASDISIHAKEILRMKDELNGIMARHTGQSIEKITADTDRDYFMSSEEALEY 183

Query: 199 GVVDKVLMSRIDIEEKSK 216
           G++DKV+ SR D++E  K
Sbjct: 184 GLIDKVMKSRADVDESIK 201


>gi|258544428|ref|ZP_05704662.1| endopeptidase Clp [Cardiobacterium hominis ATCC 15826]
 gi|258520317|gb|EEV89176.1| endopeptidase Clp [Cardiobacterium hominis ATCC 15826]
          Length = 206

 Score =  268 bits (686), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 121/196 (61%), Positives = 158/196 (80%), Gaps = 2/196 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+PMVVEQT RGERSYDIYSRLLKER++F+ G + D  A L+ AQ+LFLEAENP ++I L
Sbjct: 8   LIPMVVEQTGRGERSYDIYSRLLKERVIFLVGPVNDASANLVVAQMLFLEAENPDQDIHL 67

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM++YDTM FIKP +ST C+GQAASMG++LL+AG KG RFALP++R+++
Sbjct: 68  YINSPGGSVTAGMSVYDTMNFIKPDVSTLCLGQAASMGAMLLTAGAKGKRFALPHSRVMI 127

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASDIE HA++++K+K  LNE+  K+ G+  E++E+  DRD+ MSA EA
Sbjct: 128 HQPLISGGLGGQASDIEIHARELLKMKATLNELLAKHSGQPLEKIERDTDRDNFMSAEEA 187

Query: 196 CDWGVVDKVLMSRIDI 211
             +G++D V  +R DI
Sbjct: 188 AAYGLIDHVTTARADI 203


>gi|218768333|ref|YP_002342845.1| endopeptidase [Neisseria meningitidis Z2491]
 gi|18203136|sp|Q9JU33|CLPP_NEIMA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|121052341|emb|CAM08672.1| endopeptidase [Neisseria meningitidis Z2491]
 gi|308389431|gb|ADO31751.1| ATP-dependent Clp protease, proteolytic subunit [Neisseria
           meningitidis alpha710]
 gi|319410578|emb|CBY90947.1| ATP-dependent Clp protease proteolytic subunit (endopeptidase Clp)
           [Neisseria meningitidis WUE 2594]
          Length = 204

 Score =  268 bits (686), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 123/197 (62%), Positives = 159/197 (80%), Gaps = 2/197 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ+ RGER++DIYSRLLKERIVF+ G + D  A L+ AQLLFLE+ENP K+I  
Sbjct: 7   LVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFF 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM+IYDTM FIKP +ST C+GQAASMG+ LLSAGEKG RFALPN+RI++
Sbjct: 67  YINSPGGSVTAGMSIYDTMNFIKPDVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMI 126

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASDIE HA++++KIK +LN +  K+CG+   ++E+  DRD+ MSA EA
Sbjct: 127 HQPLISGGLGGQASDIEIHARELLKIKEKLNRLMAKHCGRDLADLERDTDRDNFMSAEEA 186

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G++D+VL +R  ++
Sbjct: 187 KEYGLIDQVLENRASLQ 203


>gi|255067667|ref|ZP_05319522.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
           sicca ATCC 29256]
 gi|255048141|gb|EET43605.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
           sicca ATCC 29256]
          Length = 206

 Score =  268 bits (686), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 123/197 (62%), Positives = 159/197 (80%), Gaps = 2/197 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ+ RGER++DIYSRLLKERIVF+ G + D  A L+ AQLLFLE+ENP K+I  
Sbjct: 9   LVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFF 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM+IYDTM FIKP +ST C+GQAASMG+ LLSAGEKG RFALPN+RI++
Sbjct: 69  YINSPGGSVTAGMSIYDTMNFIKPNVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMI 128

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASDIE HA++++KIK +LN +  K+CG+   ++E+  DRD+ MSA EA
Sbjct: 129 HQPLISGGLGGQASDIEIHARELLKIKEKLNRLMAKHCGRDLADLERDTDRDNFMSAEEA 188

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G++D+VL +R  ++
Sbjct: 189 KEYGLIDQVLENRASLQ 205


>gi|160897495|ref|YP_001563077.1| ATP-dependent Clp protease proteolytic subunit [Delftia acidovorans
           SPH-1]
 gi|160363079|gb|ABX34692.1| Endopeptidase Clp [Delftia acidovorans SPH-1]
          Length = 201

 Score =  268 bits (686), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 119/191 (62%), Positives = 154/191 (80%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQ+ RGERS+DIYSRLL++R++F+ G++ D ++ L+CAQLLFLEAENP K I L
Sbjct: 7   LVPMVVEQSARGERSFDIYSRLLRDRVIFLNGEVNDAVSALVCAQLLFLEAENPDKPIHL 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+T+G+A+YDTMQFIK P+ T CMG A SMGS LL AGE G R ALPNA + +
Sbjct: 67  YINSPGGVITSGLAMYDTMQFIKSPVHTLCMGTARSMGSFLLMAGEPGHRMALPNASLHV 126

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI  HA+++++ K R+  +Y ++CG++YEEVE+ LDRD  M+A EA +
Sbjct: 127 HQPLGGVQGQASDIRIHAEEMLRTKDRVTRLYAQHCGRSYEEVERDLDRDRFMTAEEARE 186

Query: 198 WGVVDKVLMSR 208
           WG++DKVL  R
Sbjct: 187 WGLIDKVLDRR 197


>gi|170718338|ref|YP_001783566.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus somnus
           2336]
 gi|189082460|sp|B0UW20|CLPP_HAES2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|168826467|gb|ACA31838.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Haemophilus
           somnus 2336]
          Length = 193

 Score =  268 bits (686), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 123/193 (63%), Positives = 159/193 (82%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++PMVVEQT+RGERSYDIYSRLLKER++F+TG++ED MA LI AQLLFLEAE+P K+I
Sbjct: 1   MSVIPMVVEQTSRGERSYDIYSRLLKERVIFLTGEVEDRMANLIVAQLLFLEAEDPAKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           ++YINSPGG VTAGMAIYDTMQFIKP + T C+GQA SMG+ LL+ G  G R ALP+AR+
Sbjct: 61  NIYINSPGGSVTAGMAIYDTMQFIKPNVRTLCIGQACSMGAFLLAGGTAGKRAALPHARV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQASDI+ HAQ+I+KIK+ LNE    + G++ E++E+  DRD+ MSA +A
Sbjct: 121 MIHQPLGGFRGQASDIQIHAQEILKIKQTLNERLAFHTGQSIEQIEQDTDRDNFMSAEQA 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD VL+ R
Sbjct: 181 KLYGLVDDVLIKR 193


>gi|261364459|ref|ZP_05977342.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
           mucosa ATCC 25996]
 gi|288567379|gb|EFC88939.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
           mucosa ATCC 25996]
          Length = 206

 Score =  268 bits (685), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 123/197 (62%), Positives = 159/197 (80%), Gaps = 2/197 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ+ RGER++DIYSRLLKERIVF+ G + D  A L+ AQLLFLE+ENP K+I  
Sbjct: 9   LVPTVIEQSGRGERAFDIYSRLLKERIVFLIGPVTDESANLVVAQLLFLESENPDKDIFF 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM+IYDTM FIKP +ST C+GQAASMG+ LLSAGEKG RFALPN+RI++
Sbjct: 69  YINSPGGSVTAGMSIYDTMNFIKPNVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMI 128

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASDIE HA++++KIK +LN +  K+CG+   ++E+  DRD+ MSA EA
Sbjct: 129 HQPLISGGLGGQASDIEIHARELLKIKEKLNRLMAKHCGRDLADLERDTDRDNFMSAEEA 188

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G++D+VL +R  ++
Sbjct: 189 KEYGLIDQVLENRASLQ 205


>gi|254670503|emb|CBA06249.1| ATP-dependent Clp protease, proteolytic subunit [Neisseria
           meningitidis alpha153]
          Length = 209

 Score =  268 bits (685), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 123/197 (62%), Positives = 159/197 (80%), Gaps = 2/197 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ+ RGER++DIYSRLLKERIVF+ G + D  A L+ AQLLFLE+ENP K+I  
Sbjct: 12  LVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFF 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM+IYDTM FIKP +ST C+GQAASMG+ LLSAGEKG RFALPN+RI++
Sbjct: 72  YINSPGGSVTAGMSIYDTMNFIKPDVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMI 131

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASDIE HA++++KIK +LN +  K+CG+   ++E+  DRD+ MSA EA
Sbjct: 132 HQPLISGGLGGQASDIEIHARELLKIKEKLNRLMAKHCGRDLADLERDTDRDNFMSAEEA 191

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G++D+VL +R  ++
Sbjct: 192 KEYGLIDQVLENRASLQ 208


>gi|68249290|ref|YP_248402.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae 86-028NP]
 gi|161350016|ref|NP_438872.3| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae Rd KW20]
 gi|260581528|ref|ZP_05849336.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Haemophilus
           influenzae RdAW]
 gi|1168977|sp|P43867|CLPP_HAEIN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|81336285|sp|Q4QMK5|CLPP_HAEI8 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|1573716|gb|AAC22371.1| ATP-dependent Clp protease, proteolytic subunit (clpP) [Haemophilus
           influenzae Rd KW20]
 gi|68057489|gb|AAX87742.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae 86-028NP]
 gi|260091826|gb|EEW75781.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Haemophilus
           influenzae RdAW]
          Length = 193

 Score =  268 bits (685), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 124/193 (64%), Positives = 157/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++PMVVEQT+RGERSYDIYSRLLKER++F++G++ED MA LI AQLLFLE+E+P K+I
Sbjct: 1   MSVIPMVVEQTSRGERSYDIYSRLLKERVIFLSGEVEDRMANLIVAQLLFLESEDPTKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           ++YINSPGG VTAGMAIYDTMQFIKP I T C+GQA SMG+ LL+ G  G R ALPNAR+
Sbjct: 61  NIYINSPGGSVTAGMAIYDTMQFIKPDIRTLCIGQACSMGAFLLAGGTAGKRAALPNARV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQASDI+ HAQ+I+KIK  LN+    + G+  E +EK  DRD+ MSA EA
Sbjct: 121 MIHQPLGGFRGQASDIQIHAQEILKIKHTLNDRLAFHTGQGIERIEKDTDRDNFMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD+VL+ R
Sbjct: 181 QAYGLVDEVLVKR 193


>gi|223042116|ref|ZP_03612288.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           minor 202]
 gi|240950344|ref|ZP_04754614.1| ATP-dependent Clp protease proteolytic subunit ClpP [Actinobacillus
           minor NM305]
 gi|223017093|gb|EEF15533.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           minor 202]
 gi|240295155|gb|EER45974.1| ATP-dependent Clp protease proteolytic subunit ClpP [Actinobacillus
           minor NM305]
          Length = 197

 Score =  268 bits (685), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 122/196 (62%), Positives = 160/196 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+PMVVEQT++GERSYDIYSRLLKERI+F+ GQ+ED+MA LI AQLLFLEAE+P+K+I
Sbjct: 1   MALIPMVVEQTSKGERSYDIYSRLLKERIIFLNGQVEDNMANLIVAQLLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVTAG+AIYDTM FIKP ++T C GQA SMG+ LLS G KG RFALPNAR+
Sbjct: 61  YLYINSPGGVVTAGLAIYDTMNFIKPDVATLCTGQACSMGAFLLSGGAKGKRFALPNARV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+  AQ+I+K+K  L     ++ G+++++V    +RD+ MSA EA
Sbjct: 121 MIHQPLGGARGQATDIQIQAQEILKLKEMLTRKMAEHSGQSFDKVAADTERDNFMSAEEA 180

Query: 196 CDWGVVDKVLMSRIDI 211
            ++G++DKVL SR ++
Sbjct: 181 KEYGLIDKVLTSRGEV 196


>gi|71066496|ref|YP_265223.1| ATP-dependent Clp protease proteolytic subunit [Psychrobacter
           arcticus 273-4]
 gi|110816464|sp|Q4FQB9|CLPP_PSYA2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|71039481|gb|AAZ19789.1| ATP-dependent Clp protease proteolytic subunit ClpP [Psychrobacter
           arcticus 273-4]
          Length = 225

 Score =  268 bits (685), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 121/192 (63%), Positives = 160/192 (83%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQ+ RGERS+DI+SRLL+ER++F+TGQ+EDHMA LI AQLLFLEAENP K+I 
Sbjct: 30  ALVPMVVEQSARGERSFDIFSRLLRERVIFLTGQVEDHMANLIVAQLLFLEAENPDKDIH 89

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG V+AG+AI+DTM FIKP +ST CMG A SMGS LL+AG+KG R+AL NAR++
Sbjct: 90  LYINSPGGSVSAGLAIFDTMNFIKPEVSTICMGGAYSMGSFLLAAGQKGKRYALANARVM 149

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  GQA+DIE +A++I+K + RLNEI  +  G++ E++EK ++RD+ + A EA 
Sbjct: 150 IHQPSGGAQGQATDIEINAREILKTRARLNEILAERTGQSVEKIEKDVERDYWLDAKEAK 209

Query: 197 DWGVVDKVLMSR 208
           ++G++D+VL  R
Sbjct: 210 EYGLIDEVLERR 221


>gi|300114126|ref|YP_003760701.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nitrosococcus
           watsonii C-113]
 gi|299540063|gb|ADJ28380.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nitrosococcus
           watsonii C-113]
          Length = 203

 Score =  268 bits (685), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 121/194 (62%), Positives = 157/194 (80%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQT RGER+YDIYSRLLKER+VF+ G +EDHMA L+ AQLLFLE+ENP K+I L
Sbjct: 8   LVPMVVEQTARGERAYDIYSRLLKERVVFLVGPVEDHMANLVVAQLLFLESENPDKDIHL 67

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG++IYDTMQFIKP +ST C+GQAASMG++LL+ G  G R  LP++R+L+
Sbjct: 68  YINSPGGSVTAGLSIYDTMQFIKPDVSTLCVGQAASMGAVLLAGGAPGKRHCLPHSRLLI 127

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQA+DI+ HA++I+ ++ RLN I  K+ G+  E+++   DRD+ MSA+E+  
Sbjct: 128 HQPLGGFQGQATDIDIHAREILLVRERLNHILAKHTGQPIEKIQHDTDRDYFMSATESLA 187

Query: 198 WGVVDKVLMSRIDI 211
           +G+VD VL  R +I
Sbjct: 188 YGLVDSVLKQRTEI 201


>gi|292493106|ref|YP_003528545.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nitrosococcus
           halophilus Nc4]
 gi|291581701|gb|ADE16158.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nitrosococcus
           halophilus Nc4]
          Length = 203

 Score =  268 bits (685), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 120/191 (62%), Positives = 157/191 (82%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQT RGER+YDIYSRLLKER+VF+ G +EDHMA L+ AQLLFLE+ENP K+I L
Sbjct: 8   LVPMVVEQTARGERAYDIYSRLLKERVVFLVGPVEDHMANLVVAQLLFLESENPDKDIHL 67

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+++YDTMQFIKP IST C+GQAASMG++LL+ G +G R  LP++R+L+
Sbjct: 68  YINSPGGSVTAGLSVYDTMQFIKPDISTLCIGQAASMGAVLLAGGTQGKRHCLPHSRLLI 127

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQA+DI+ HA++I+ ++ RLN I  K+ G+  E++++  DRD+ MSA+E+  
Sbjct: 128 HQPLGGFQGQAADIDIHAREIMLVRERLNHILAKHTGQPIEKIQRDTDRDYFMSANESVA 187

Query: 198 WGVVDKVLMSR 208
           +G+VD VL  R
Sbjct: 188 YGLVDSVLQQR 198


>gi|192360657|ref|YP_001982472.1| ATP-dependent Clp protease proteolytic subunit [Cellvibrio
           japonicus Ueda107]
 gi|190686822|gb|ACE84500.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cellvibrio
           japonicus Ueda107]
          Length = 214

 Score =  268 bits (685), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 126/209 (60%), Positives = 163/209 (77%), Gaps = 1/209 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS++   K  S  +  GLVP+V+EQT RGERS+DIYSRLLKER++F+ G +ED+MA L+ 
Sbjct: 1   MSYD-YPKSQSPIINSGLVPIVIEQTARGERSFDIYSRLLKERVIFLVGPVEDYMANLVV 59

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLEAENP K+I LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+ LL+
Sbjct: 60  AQLLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDVSTMCIGQACSMGAFLLN 119

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG +G RF LPN+R+++HQPSGG  GQASDI   AQ+I+KI+ RLNE+   + G+  E +
Sbjct: 120 AGAEGKRFCLPNSRVMIHQPSGGAQGQASDIHIQAQEILKIRARLNELMAHHSGQPIERI 179

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           E   +RD+ MSA +A D+G++D V+  RI
Sbjct: 180 EVDTERDNFMSAQQAKDYGLIDAVVEKRI 208


>gi|170720927|ref|YP_001748615.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas putida
           W619]
 gi|325274289|ref|ZP_08140400.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas sp.
           TJI-51]
 gi|226706466|sp|B1J692|CLPP_PSEPW RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|169758930|gb|ACA72246.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
           putida W619]
 gi|324100572|gb|EGB98307.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas sp.
           TJI-51]
          Length = 213

 Score =  268 bits (685), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 120/192 (62%), Positives = 155/192 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+EQ+ RGER+YDIYSRLLKER++F+ G +ED+MA L+ AQ+LFLEAENP K+I 
Sbjct: 18  GLVPMVIEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLVVAQMLFLEAENPDKDIH 77

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+ LL+AG KG R  LPN+R++
Sbjct: 78  LYINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAAGAKGKRHCLPNSRVM 137

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQA+DIE HAQ+I+ IK RLNE+   + G+  E +++  +RD+ MSAS A 
Sbjct: 138 IHQPLGGFQGQATDIEIHAQEILNIKARLNELLAYHTGQDLETIKRDTERDNFMSASRAA 197

Query: 197 DWGVVDKVLMSR 208
           ++G++D V   R
Sbjct: 198 EYGLIDSVYDKR 209


>gi|116785036|gb|ABK23566.1| unknown [Picea sitchensis]
          Length = 243

 Score =  268 bits (685), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 123/192 (64%), Positives = 159/192 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GL+PMV+EQT+RGER+YDI+SRLLKERI+ + G IED  A ++ AQLLFLE+ENP K I+
Sbjct: 32  GLIPMVIEQTSRGERAYDIFSRLLKERIICINGVIEDDTAAVVVAQLLFLESENPAKPIN 91

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGVVTAG+AIYDTMQ+I+ P+STFCMGQAASMGSLLL+AG KG R +LPNARI+
Sbjct: 92  LYINSPGGVVTAGLAIYDTMQYIRSPVSTFCMGQAASMGSLLLAAGAKGERRSLPNARIM 151

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG SGQASDI   A++I+  + RLN +Y K+ G++ +++EK ++RD  MS  EA 
Sbjct: 152 IHQPSGGASGQASDIAIQAKEILLTRDRLNSLYAKHTGQSIDKIEKCMERDMFMSPEEAK 211

Query: 197 DWGVVDKVLMSR 208
           ++G+VD V+  R
Sbjct: 212 EFGLVDTVIEQR 223


>gi|91775762|ref|YP_545518.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Methylobacillus flagellatus KT]
 gi|116243149|sp|Q1H1G0|CLPP_METFK RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|91709749|gb|ABE49677.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Methylobacillus flagellatus KT]
          Length = 213

 Score =  268 bits (684), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 122/210 (58%), Positives = 159/210 (75%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           + +   A+   E   LG +PMV+EQ+ RGERSYDIYSRLLKERI+F+ G + D  A L+ 
Sbjct: 2   IHYPATAQSQFEAQGLGYIPMVIEQSGRGERSYDIYSRLLKERIIFLVGPVNDATANLVV 61

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLEAENP K+I  YINSPGG VTAGM IYDTMQF+KP +ST C+GQAASMG+LLL+
Sbjct: 62  AQLLFLEAENPDKDIYFYINSPGGSVTAGMGIYDTMQFVKPDVSTLCVGQAASMGALLLA 121

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG +G RF LPN+R+++HQP GGF GQASDIE HA++I+ ++ +LN I   + G+  E++
Sbjct: 122 AGAQGKRFCLPNSRVMIHQPLGGFQGQASDIEIHAKEILFLREKLNHILASHTGQPVEKI 181

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRID 210
               DRD+ MSA ++  +G+VDKV+ SR D
Sbjct: 182 ALDTDRDNFMSAEQSVAYGIVDKVIASRAD 211


>gi|254805112|ref|YP_003083333.1| ATP-dependent Clp protease, proteolytic subunit [Neisseria
           meningitidis alpha14]
 gi|254668654|emb|CBA06317.1| ATP-dependent Clp protease, proteolytic subunit [Neisseria
           meningitidis alpha14]
          Length = 204

 Score =  268 bits (684), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 122/197 (61%), Positives = 159/197 (80%), Gaps = 2/197 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ+ RGER++DIYSRLLKERIVF+ G + D  A L+ AQLLFLE+ENP K+I  
Sbjct: 7   LVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFF 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM+IYDTM FIKP +ST C+GQAASMG+ LLSAGEKG RFALPN+RI++
Sbjct: 67  YINSPGGSVTAGMSIYDTMNFIKPDVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMI 126

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASDIE HA++++KIK +LN +  K+CG+   ++E+  DRD+ MSA EA
Sbjct: 127 HQPLISGGLGGQASDIEIHARELLKIKEKLNRLMAKHCGRDLADLERDTDRDNFMSAEEA 186

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G++D++L +R  ++
Sbjct: 187 KEYGLIDQILENRASLQ 203


>gi|254525030|ref|ZP_05137085.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Stenotrophomonas sp. SKA14]
 gi|219722621|gb|EED41146.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Stenotrophomonas sp. SKA14]
          Length = 196

 Score =  268 bits (684), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 119/190 (62%), Positives = 161/190 (84%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MVVEQT+RGER+YDIYSRLLKER++F+ G I+DHMA ++ AQLLFLE+ENP+K+I++YIN
Sbjct: 1   MVVEQTSRGERAYDIYSRLLKERLIFLVGPIDDHMANVVVAQLLFLESENPEKDINIYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGGVVTAGMAIYDTMQ+IKP +ST C+GQAASMG+LLL+AGE G R+ALPN+R+++HQP
Sbjct: 61  SPGGVVTAGMAIYDTMQYIKPNVSTTCIGQAASMGALLLAAGEAGKRYALPNSRVMIHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            GG+ GQA+DI+ HA++I+ ++ RLNE+  K+ G++ E + +  +RD+  SA EA  +G+
Sbjct: 121 LGGYQGQATDIDIHAREILTLRSRLNEVLAKHTGQSLETIARDTERDNFKSAFEAQAYGL 180

Query: 201 VDKVLMSRID 210
           VD+VL  R D
Sbjct: 181 VDQVLERRPD 190


>gi|194098886|ref|YP_002001950.1| ATP-dependent Clp protease proteolytic subunit [Neisseria
           gonorrhoeae NCCP11945]
 gi|193934176|gb|ACF30000.1| putative endopeptidase [Neisseria gonorrhoeae NCCP11945]
 gi|317164458|gb|ADV07999.1| ATP-dependent Clp protease proteolytic subunit [Neisseria
           gonorrhoeae TCDC-NG08107]
          Length = 209

 Score =  268 bits (684), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 123/193 (63%), Positives = 157/193 (81%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ+ RGER++DIYSRLLKERIVF+ G + D  A L+ AQLLFLE+ENP K+I  
Sbjct: 12  LVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFF 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM+IYDTM FIKP +ST C+GQAASMG+ LLSAGEKG RFALPN+RI++
Sbjct: 72  YINSPGGSVTAGMSIYDTMNFIKPDVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMI 131

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASDIE HA++++KIK +LN +  K+CG+   ++E+  DRD+ MSA EA
Sbjct: 132 HQPLISGGLGGQASDIEIHARELLKIKEKLNRLMAKHCGRDLADLERDTDRDNFMSAEEA 191

Query: 196 CDWGVVDKVLMSR 208
            ++G++D+VL +R
Sbjct: 192 KEYGLIDQVLENR 204


>gi|261377747|ref|ZP_05982320.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
           cinerea ATCC 14685]
 gi|269146032|gb|EEZ72450.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
           cinerea ATCC 14685]
          Length = 206

 Score =  268 bits (684), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 122/197 (61%), Positives = 159/197 (80%), Gaps = 2/197 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ+ RGER++DIYSRLLKERIVF+ G + D  A L+ AQLLFLE+ENP K+I  
Sbjct: 9   LVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFF 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM+IYDTM FIKP +ST C+GQAASMG+ LLSAGEKG RFALPN+RI++
Sbjct: 69  YINSPGGSVTAGMSIYDTMNFIKPNVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMI 128

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASDIE HA++++KIK +LN +  K+CG+   ++E+  DRD+ MSA EA
Sbjct: 129 HQPLISGGLGGQASDIEIHARELLKIKEKLNHLMAKHCGRDLADLERDTDRDNFMSAEEA 188

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G++D++L +R  ++
Sbjct: 189 KEYGLIDQILENRASLQ 205


>gi|329908483|ref|ZP_08274873.1| ATP-dependent Clp protease proteolytic subunit [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327546710|gb|EGF31661.1| ATP-dependent Clp protease proteolytic subunit [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 206

 Score =  268 bits (684), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 122/197 (61%), Positives = 157/197 (79%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E   LG++PMV+EQ+ RGERSYDIYSRLLKER++F+ G + D +A LI AQLLFLE+ENP
Sbjct: 9   EPQMLGMIPMVIEQSGRGERSYDIYSRLLKERVIFLVGPVNDGVANLIVAQLLFLESENP 68

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+ISLYINSPGG V+AGMAI+DTMQFIKP +ST C G AASMG+ LL+AG KG RF+LP
Sbjct: 69  DKDISLYINSPGGSVSAGMAIFDTMQFIKPNVSTLCTGLAASMGAFLLAAGAKGKRFSLP 128

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+RI++HQPSGG  GQA+DIE  A++I+ ++ RLN I     G+T EE+ +  +RD+ MS
Sbjct: 129 NSRIMIHQPSGGAQGQATDIEIQAKEILYLRERLNGILADKTGRTIEEIRRDTERDNFMS 188

Query: 192 ASEACDWGVVDKVLMSR 208
           A EA  +G++DKVL +R
Sbjct: 189 ADEAEKYGMIDKVLTTR 205


>gi|313887837|ref|ZP_07821517.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846180|gb|EFR33561.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 194

 Score =  268 bits (684), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 121/194 (62%), Positives = 159/194 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQTNRGERSYDIYSRLLK+RI+F++G++ D MA LI AQLLFLEAE+P K+I
Sbjct: 1   MALVPMVVEQTNRGERSYDIYSRLLKDRIIFLSGEVNDTMADLIVAQLLFLEAEDPNKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG V+AG AIYDTM +IKP +ST C+G AASMG+ LL++G KG RFALPN+ I
Sbjct: 61  QLYINSPGGSVSAGFAIYDTMNYIKPDVSTICIGMAASMGAFLLASGAKGKRFALPNSDI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQASDI+ +A+ I+KI+ +LNEI  +  G+  E++EK  DRD+ +++ EA
Sbjct: 121 MIHQPSGGAQGQASDIQINAEKILKIRHKLNEILAERTGQDLEKIEKDTDRDYWLNSQEA 180

Query: 196 CDWGVVDKVLMSRI 209
            D+G++DKV+  R+
Sbjct: 181 KDYGLIDKVIEKRV 194


>gi|254673129|emb|CBA07904.1| ATP-dependent Clp protease, proteolytic subunit [Neisseria
           meningitidis alpha275]
          Length = 209

 Score =  268 bits (684), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 122/197 (61%), Positives = 159/197 (80%), Gaps = 2/197 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ+ RGER++DIYSRLLKERIVF+ G + D  A L+ AQLLFLE+ENP K+I  
Sbjct: 12  LVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFF 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM+IYDTM FIKP +ST C+GQAASMG+ LLSAGEKG RFALPN+RI++
Sbjct: 72  YINSPGGSVTAGMSIYDTMNFIKPDVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMI 131

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASDIE HA++++KIK +LN +  K+CG+   ++E+  DRD+ MSA EA
Sbjct: 132 HQPLISGGLGGQASDIEIHARELLKIKEKLNRLMAKHCGRDLADLERDTDRDNFMSAEEA 191

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G++D++L +R  ++
Sbjct: 192 KEYGLIDQILENRASLQ 208


>gi|59801023|ref|YP_207735.1| putative endopeptidase [Neisseria gonorrhoeae FA 1090]
 gi|239999171|ref|ZP_04719095.1| putative endopeptidase [Neisseria gonorrhoeae 35/02]
 gi|240013921|ref|ZP_04720834.1| putative endopeptidase [Neisseria gonorrhoeae DGI18]
 gi|240016363|ref|ZP_04722903.1| putative endopeptidase [Neisseria gonorrhoeae FA6140]
 gi|240080482|ref|ZP_04725025.1| putative endopeptidase [Neisseria gonorrhoeae FA19]
 gi|240113150|ref|ZP_04727640.1| putative endopeptidase [Neisseria gonorrhoeae MS11]
 gi|240115906|ref|ZP_04729968.1| putative endopeptidase [Neisseria gonorrhoeae PID18]
 gi|240118204|ref|ZP_04732266.1| putative endopeptidase [Neisseria gonorrhoeae PID1]
 gi|240121490|ref|ZP_04734452.1| putative endopeptidase [Neisseria gonorrhoeae PID24-1]
 gi|240123752|ref|ZP_04736708.1| putative endopeptidase [Neisseria gonorrhoeae PID332]
 gi|240125943|ref|ZP_04738829.1| putative endopeptidase [Neisseria gonorrhoeae SK-92-679]
 gi|240128455|ref|ZP_04741116.1| putative endopeptidase [Neisseria gonorrhoeae SK-93-1035]
 gi|254493943|ref|ZP_05107114.1| endopeptidase [Neisseria gonorrhoeae 1291]
 gi|260440279|ref|ZP_05794095.1| ATP-dependent Clp protease proteolytic subunit [Neisseria
           gonorrhoeae DGI2]
 gi|268595002|ref|ZP_06129169.1| ATP-dependent Clp protease proteolytic subunit [Neisseria
           gonorrhoeae 35/02]
 gi|268596618|ref|ZP_06130785.1| ATP-dependent Clp protease proteolytic subunit [Neisseria
           gonorrhoeae FA19]
 gi|268599230|ref|ZP_06133397.1| endopeptidase [Neisseria gonorrhoeae MS11]
 gi|268601577|ref|ZP_06135744.1| endopeptidase [Neisseria gonorrhoeae PID18]
 gi|268603916|ref|ZP_06138083.1| endopeptidase [Neisseria gonorrhoeae PID1]
 gi|268682379|ref|ZP_06149241.1| endopeptidase [Neisseria gonorrhoeae PID332]
 gi|268684537|ref|ZP_06151399.1| endopeptidase [Neisseria gonorrhoeae SK-92-679]
 gi|268686847|ref|ZP_06153709.1| endopeptidase [Neisseria gonorrhoeae SK-93-1035]
 gi|291043574|ref|ZP_06569290.1| ATP-dependent Clp protease proteolytic subunit [Neisseria
           gonorrhoeae DGI2]
 gi|293398887|ref|ZP_06643052.1| Clp protease [Neisseria gonorrhoeae F62]
 gi|67460148|sp|Q5F914|CLPP_NEIG1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|59717918|gb|AAW89323.1| putative endopeptidase [Neisseria gonorrhoeae FA 1090]
 gi|226512983|gb|EEH62328.1| endopeptidase [Neisseria gonorrhoeae 1291]
 gi|268548391|gb|EEZ43809.1| ATP-dependent Clp protease proteolytic subunit [Neisseria
           gonorrhoeae 35/02]
 gi|268550406|gb|EEZ45425.1| ATP-dependent Clp protease proteolytic subunit [Neisseria
           gonorrhoeae FA19]
 gi|268583361|gb|EEZ48037.1| endopeptidase [Neisseria gonorrhoeae MS11]
 gi|268585708|gb|EEZ50384.1| endopeptidase [Neisseria gonorrhoeae PID18]
 gi|268588047|gb|EEZ52723.1| endopeptidase [Neisseria gonorrhoeae PID1]
 gi|268622663|gb|EEZ55063.1| endopeptidase [Neisseria gonorrhoeae PID332]
 gi|268624821|gb|EEZ57221.1| endopeptidase [Neisseria gonorrhoeae SK-92-679]
 gi|268627131|gb|EEZ59531.1| endopeptidase [Neisseria gonorrhoeae SK-93-1035]
 gi|291012037|gb|EFE04026.1| ATP-dependent Clp protease proteolytic subunit [Neisseria
           gonorrhoeae DGI2]
 gi|291610301|gb|EFF39411.1| Clp protease [Neisseria gonorrhoeae F62]
          Length = 204

 Score =  268 bits (684), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 123/193 (63%), Positives = 157/193 (81%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ+ RGER++DIYSRLLKERIVF+ G + D  A L+ AQLLFLE+ENP K+I  
Sbjct: 7   LVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFF 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM+IYDTM FIKP +ST C+GQAASMG+ LLSAGEKG RFALPN+RI++
Sbjct: 67  YINSPGGSVTAGMSIYDTMNFIKPDVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMI 126

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASDIE HA++++KIK +LN +  K+CG+   ++E+  DRD+ MSA EA
Sbjct: 127 HQPLISGGLGGQASDIEIHARELLKIKEKLNRLMAKHCGRDLADLERDTDRDNFMSAEEA 186

Query: 196 CDWGVVDKVLMSR 208
            ++G++D+VL +R
Sbjct: 187 KEYGLIDQVLENR 199


>gi|121635023|ref|YP_975268.1| endopeptidase [Neisseria meningitidis FAM18]
 gi|161870184|ref|YP_001599354.1| ATP-dependent Clp protease, proteolytic subunit [Neisseria
           meningitidis 053442]
 gi|166201829|sp|A1KUD9|CLPP_NEIMF RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|189082461|sp|A9LZN9|CLPP_NEIM0 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|120866729|emb|CAM10482.1| endopeptidase [Neisseria meningitidis FAM18]
 gi|161595737|gb|ABX73397.1| ATP-dependent Clp protease, proteolytic subunit [Neisseria
           meningitidis 053442]
 gi|261392408|emb|CAX49950.1| ATP-dependent Clp protease proteolytic subunit (endopeptidase Clp)
           [Neisseria meningitidis 8013]
 gi|325128392|gb|EGC51275.1| endopeptidase Clp [Neisseria meningitidis N1568]
 gi|325130325|gb|EGC53091.1| endopeptidase Clp [Neisseria meningitidis OX99.30304]
 gi|325132488|gb|EGC55181.1| endopeptidase Clp [Neisseria meningitidis M6190]
 gi|325134447|gb|EGC57092.1| endopeptidase Clp [Neisseria meningitidis M13399]
 gi|325136185|gb|EGC58793.1| endopeptidase Clp [Neisseria meningitidis M0579]
 gi|325138262|gb|EGC60831.1| endopeptidase Clp [Neisseria meningitidis ES14902]
 gi|325142516|gb|EGC64917.1| endopeptidase Clp [Neisseria meningitidis 961-5945]
 gi|325198463|gb|ADY93919.1| endopeptidase Clp [Neisseria meningitidis G2136]
 gi|325201978|gb|ADY97432.1| endopeptidase Clp [Neisseria meningitidis M01-240149]
 gi|325204312|gb|ADY99765.1| endopeptidase Clp [Neisseria meningitidis M01-240355]
 gi|325208271|gb|ADZ03723.1| endopeptidase Clp [Neisseria meningitidis NZ-05/33]
          Length = 204

 Score =  268 bits (684), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 122/197 (61%), Positives = 159/197 (80%), Gaps = 2/197 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ+ RGER++DIYSRLLKERIVF+ G + D  A L+ AQLLFLE+ENP K+I  
Sbjct: 7   LVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFF 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM+IYDTM FIKP +ST C+GQAASMG+ LLSAGEKG RFALPN+RI++
Sbjct: 67  YINSPGGSVTAGMSIYDTMNFIKPDVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMI 126

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASDIE HA++++KIK +LN +  K+CG+   ++E+  DRD+ MSA EA
Sbjct: 127 HQPLISGGLGGQASDIEIHARELLKIKEKLNRLMAKHCGRDLADLERDTDRDNFMSAEEA 186

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G++D++L +R  ++
Sbjct: 187 KEYGLIDQILENRASLQ 203


>gi|224147635|ref|XP_002336515.1| predicted protein [Populus trichocarpa]
 gi|222835812|gb|EEE74247.1| predicted protein [Populus trichocarpa]
          Length = 201

 Score =  268 bits (684), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 119/191 (62%), Positives = 154/191 (80%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQ+ RGERS+DIYSRLL++R++F+ G++ D ++ L+CAQLLFLEAENP K I L
Sbjct: 7   LVPMVVEQSARGERSFDIYSRLLRDRVIFLNGEVNDVVSALVCAQLLFLEAENPDKPIHL 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+T+G+A+YDTMQFIK P+ T CMG A SMGS LL AGE G R ALPNA + +
Sbjct: 67  YINSPGGVITSGLAMYDTMQFIKSPVHTLCMGTARSMGSFLLMAGEPGHRMALPNASLHV 126

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI  HA+++++ K R+  +Y ++CG++YEEVE+ LDRD  M+A EA +
Sbjct: 127 HQPLGGVQGQASDIRIHAEEMLRTKDRVTRLYAQHCGRSYEEVERDLDRDRFMTAEEARE 186

Query: 198 WGVVDKVLMSR 208
           WG++DKVL  R
Sbjct: 187 WGLIDKVLDRR 197


>gi|116243153|sp|Q1Q8J2|CLPP_PSYCK RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
          Length = 215

 Score =  268 bits (684), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 121/192 (63%), Positives = 159/192 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQ+ RGERS+DI+SRLL+ER++F+TGQ+EDHMA LI AQLLFLEAENP K+I 
Sbjct: 20  ALVPMVVEQSARGERSFDIFSRLLRERVIFLTGQVEDHMANLIVAQLLFLEAENPDKDIH 79

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG V+AG+AI+DTM FIKP +ST CMG A SMGS LL+AGEKG R+AL NAR++
Sbjct: 80  LYINSPGGSVSAGLAIFDTMNFIKPEVSTICMGGAYSMGSFLLAAGEKGKRYALANARVM 139

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  GQA+DIE +A++I+K + RLNEI  +  G+  +++EK ++RD+ + A EA 
Sbjct: 140 IHQPSGGAQGQATDIEINAREILKTRARLNEILAERTGQPVDKIEKDVERDYWLDAKEAK 199

Query: 197 DWGVVDKVLMSR 208
           ++G++D+VL  R
Sbjct: 200 EYGLIDEVLERR 211


>gi|304387382|ref|ZP_07369574.1| ATP-dependent Clp protease proteolytic subunit [Neisseria
           meningitidis ATCC 13091]
 gi|304338633|gb|EFM04751.1| ATP-dependent Clp protease proteolytic subunit [Neisseria
           meningitidis ATCC 13091]
          Length = 209

 Score =  268 bits (684), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 122/197 (61%), Positives = 159/197 (80%), Gaps = 2/197 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ+ RGER++DIYSRLLKERIVF+ G + D  A L+ AQLLFLE+ENP K+I  
Sbjct: 12  LVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFF 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM+IYDTM FIKP +ST C+GQAASMG+ LLSAGEKG RFALPN+RI++
Sbjct: 72  YINSPGGSVTAGMSIYDTMNFIKPDVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMI 131

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASDIE HA++++KIK +LN +  K+CG+   ++E+  DRD+ MSA EA
Sbjct: 132 HQPLISGGLGGQASDIEIHARELLKIKEKLNRLMAKHCGRDLADLERDTDRDNFMSAEEA 191

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G++D++L +R  ++
Sbjct: 192 KEYGLIDQILENRASLQ 208


>gi|221065471|ref|ZP_03541576.1| Endopeptidase Clp [Comamonas testosteroni KF-1]
 gi|220710494|gb|EED65862.1| Endopeptidase Clp [Comamonas testosteroni KF-1]
          Length = 201

 Score =  268 bits (684), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 118/191 (61%), Positives = 154/191 (80%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQ+ RGERS+DIYSRLL++R++F+ G++ D ++ L+CAQLLFLEAENP K I L
Sbjct: 7   LVPMVVEQSARGERSFDIYSRLLRDRVIFLNGEVNDAVSALVCAQLLFLEAENPDKPIHL 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+T+G+A+YDTMQFIK P+ T CMG A SMGS LL AGE G R ALPNA + +
Sbjct: 67  YINSPGGVITSGLAMYDTMQFIKSPVHTLCMGTARSMGSFLLMAGEPGHRMALPNASLHV 126

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI  HA+++++ K R+  +Y ++CG++Y+EVE+ LDRD  M+A EA +
Sbjct: 127 HQPLGGVQGQASDIRIHAEEMLRTKDRVTRLYAQHCGRSYQEVERDLDRDRFMTAKEARE 186

Query: 198 WGVVDKVLMSR 208
           WG++DKVL  R
Sbjct: 187 WGLIDKVLDRR 197


>gi|325293013|ref|YP_004278877.1| ATP-dependent Clp protease, proteolytic subunit [Agrobacterium sp.
           H13-3]
 gi|325060866|gb|ADY64557.1| ATP-dependent Clp protease, proteolytic subunit [Agrobacterium sp.
           H13-3]
          Length = 203

 Score =  268 bits (684), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 118/194 (60%), Positives = 155/194 (79%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQ+ RGERS+DIYSRLL+ERI+F+ G++ D ++ L+CAQLLFLEAENP+K I L
Sbjct: 7   LVPMVVEQSARGERSFDIYSRLLRERIIFLNGEVNDAVSALVCAQLLFLEAENPKKPIHL 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G+A+YDTM++I+ P+ T CMG A SMGS LL AGE G R ALPNA IL+
Sbjct: 67  YINSPGGVVTSGLAMYDTMRYIRAPVHTLCMGTARSMGSFLLMAGEPGARAALPNASILI 126

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGGF GQASD+  HA++I + K R+  +Y ++C ++Y+E E  +DRD  M+  EA +
Sbjct: 127 HQPSGGFQGQASDMLIHAEEIRQTKHRMTRLYAEHCKRSYDEFEAAMDRDRFMTVEEALE 186

Query: 198 WGVVDKVLMSRIDI 211
           WG++D+VL  R D+
Sbjct: 187 WGLIDRVLDVREDV 200


>gi|93007058|ref|YP_581495.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Psychrobacter
           cryohalolentis K5]
 gi|92394736|gb|ABE76011.1| ATP-dependent Clp protease proteolytic subunit ClpP [Psychrobacter
           cryohalolentis K5]
          Length = 231

 Score =  267 bits (683), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 121/192 (63%), Positives = 159/192 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQ+ RGERS+DI+SRLL+ER++F+TGQ+EDHMA LI AQLLFLEAENP K+I 
Sbjct: 36  ALVPMVVEQSARGERSFDIFSRLLRERVIFLTGQVEDHMANLIVAQLLFLEAENPDKDIH 95

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG V+AG+AI+DTM FIKP +ST CMG A SMGS LL+AGEKG R+AL NAR++
Sbjct: 96  LYINSPGGSVSAGLAIFDTMNFIKPEVSTICMGGAYSMGSFLLAAGEKGKRYALANARVM 155

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  GQA+DIE +A++I+K + RLNEI  +  G+  +++EK ++RD+ + A EA 
Sbjct: 156 IHQPSGGAQGQATDIEINAREILKTRARLNEILAERTGQPVDKIEKDVERDYWLDAKEAK 215

Query: 197 DWGVVDKVLMSR 208
           ++G++D+VL  R
Sbjct: 216 EYGLIDEVLERR 227


>gi|153871192|ref|ZP_02000426.1| Peptidase S14, ClpP [Beggiatoa sp. PS]
 gi|152072341|gb|EDN69573.1| Peptidase S14, ClpP [Beggiatoa sp. PS]
          Length = 228

 Score =  267 bits (683), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 119/192 (61%), Positives = 159/192 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMVVEQ+ RGER+YDIYSRLLKER++F+ G +ED+ A L+ AQLLFLE+ENP+K+I 
Sbjct: 21  GLVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYTANLVVAQLLFLESENPEKDIH 80

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG V+AG+AIYDTMQFIKP +ST C+GQAASMG+LLLS G    R+ LP++RI+
Sbjct: 81  LYINSPGGSVSAGLAIYDTMQFIKPDVSTLCIGQAASMGALLLSGGADKKRYCLPHSRIM 140

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQA+DI+ HA++I+K++ RLNEI  K+ G+  E+++K  +RD+ M+A  A 
Sbjct: 141 IHQPLGGFQGQATDIDIHAREILKVRERLNEILAKHSGQPLEKIQKDTERDNFMAAETAV 200

Query: 197 DWGVVDKVLMSR 208
           ++G+VD VL +R
Sbjct: 201 EYGLVDAVLSTR 212


>gi|77165153|ref|YP_343678.1| endopeptidase Clp [Nitrosococcus oceani ATCC 19707]
 gi|254434725|ref|ZP_05048233.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nitrosococcus
           oceani AFC27]
 gi|110816460|sp|Q3JAJ8|CLPP_NITOC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|76883467|gb|ABA58148.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nitrosococcus
           oceani ATCC 19707]
 gi|207091058|gb|EDZ68329.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nitrosococcus
           oceani AFC27]
          Length = 203

 Score =  267 bits (683), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 121/194 (62%), Positives = 157/194 (80%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQT RGER+YDIYSRLLKER+VF+ G +EDHMA L+ AQLLFLE+ENP K+I L
Sbjct: 8   LVPMVVEQTARGERAYDIYSRLLKERVVFLVGPVEDHMANLVVAQLLFLESENPDKDIHL 67

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG++IYDTMQFIKP +ST C+GQAASMG++LL+ G  G R  LP++R+L+
Sbjct: 68  YINSPGGSVTAGLSIYDTMQFIKPDVSTLCVGQAASMGAVLLAGGAGGKRHCLPHSRLLI 127

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQA+DI+ HA++I+ ++ RLN I  K+ G+  E+++   DRD+ MSA+E+  
Sbjct: 128 HQPLGGFQGQATDIDIHAREILLVRERLNHILAKHTGQPIEKIQHDTDRDYFMSATESLA 187

Query: 198 WGVVDKVLMSRIDI 211
           +G+VD VL  R +I
Sbjct: 188 YGLVDSVLKQRAEI 201


>gi|257093849|ref|YP_003167490.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257046373|gb|ACV35561.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 209

 Score =  267 bits (683), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 118/193 (61%), Positives = 156/193 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LGLVPMV+EQ+ RGER+YDIYSRLLKER+VF+ G + D  A L+ AQLLFLEAENP K+I
Sbjct: 14  LGLVPMVIEQSGRGERAYDIYSRLLKERVVFLVGPVNDVTANLVVAQLLFLEAENPDKDI 73

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG V+AG+++YDTMQFIKP +ST CMGQA SMG+ LL+AG +G RFALPN+R+
Sbjct: 74  HFYINSPGGSVSAGLSVYDTMQFIKPDVSTLCMGQACSMGAFLLAAGTRGKRFALPNSRV 133

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQASDI  HA++I+ ++ +LNE+   + G+  E +E+  DRD+ +SA EA
Sbjct: 134 MIHQPMGGFQGQASDIAIHAKEILSLRAKLNELMALHTGQEIERIERDTDRDNFLSAQEA 193

Query: 196 CDWGVVDKVLMSR 208
            ++G++DKVL +R
Sbjct: 194 AEYGLIDKVLANR 206


>gi|167032910|ref|YP_001668141.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas putida
           GB-1]
 gi|189082463|sp|B0KJG6|CLPP_PSEPG RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166859398|gb|ABY97805.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
           putida GB-1]
          Length = 213

 Score =  267 bits (683), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 119/192 (61%), Positives = 155/192 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+EQ+ RGER+YDIYSRLLKER++F+ G +ED+MA L+ AQ+LFLEAENP K+I 
Sbjct: 18  GLVPMVIEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLVVAQMLFLEAENPDKDIH 77

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+ LL+AG KG R  LPN+R++
Sbjct: 78  LYINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLTAGAKGKRHCLPNSRVM 137

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQA+DI+ HAQ+I+ IK RLNE+   + G+  E +++  +RD+ MSAS A 
Sbjct: 138 IHQPLGGFQGQATDIQIHAQEILSIKARLNELLAYHTGQDLETIQRDTERDNFMSASRAA 197

Query: 197 DWGVVDKVLMSR 208
           ++G++D V   R
Sbjct: 198 EYGLIDSVYDKR 209


>gi|325144548|gb|EGC66847.1| endopeptidase Clp [Neisseria meningitidis M01-240013]
          Length = 204

 Score =  267 bits (682), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 122/193 (63%), Positives = 157/193 (81%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ+ RGER++DIYSRLLKERIVF+ G + D  A L+ AQLLFLE+ENP K+I  
Sbjct: 7   LVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFF 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM+IYDTM FIKP +ST C+GQAASMG+ LLSAGEKG RFALPN+RI++
Sbjct: 67  YINSPGGSVTAGMSIYDTMNFIKPDVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMI 126

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASDIE HA++++KIK +LN +  K+CG+   ++E+  DRD+ MSA EA
Sbjct: 127 HQPLISGGLGGQASDIEIHARELLKIKEKLNRLMAKHCGRDLADLERDTDRDNFMSAEEA 186

Query: 196 CDWGVVDKVLMSR 208
            ++G++D++L +R
Sbjct: 187 KEYGLIDQILENR 199


>gi|170740561|ref|YP_001769216.1| endopeptidase Clp [Methylobacterium sp. 4-46]
 gi|168194835|gb|ACA16782.1| Endopeptidase Clp [Methylobacterium sp. 4-46]
          Length = 211

 Score =  267 bits (682), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 124/197 (62%), Positives = 156/197 (79%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
           +  LVPMVVEQ++RGER++DIYSRLL+ERIVF TG ++D  A+L  AQLLFLEAENP+KE
Sbjct: 8   YASLVPMVVEQSSRGERAFDIYSRLLRERIVFFTGAVDDQTASLTVAQLLFLEAENPKKE 67

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           ISLYINSPGGVVT+G+AIYDTMQFI+ P+ST C+GQAASMGSLLL+AG  G RFA  NAR
Sbjct: 68  ISLYINSPGGVVTSGLAIYDTMQFIRCPVSTLCVGQAASMGSLLLAAGAPGQRFATANAR 127

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQP GGF GQA+DI  HA++   IKRR+ EIY ++ G+ Y  VE+ L+RD  +    
Sbjct: 128 IMVHQPIGGFQGQATDIMIHARETEAIKRRMTEIYARHTGQDYATVERALERDTFLDPEA 187

Query: 195 ACDWGVVDKVLMSRIDI 211
           A  +G++D VL  R +I
Sbjct: 188 ARAFGLIDGVLTGRPEI 204


>gi|226501814|ref|NP_001150578.1| LOC100284211 [Zea mays]
 gi|195640324|gb|ACG39630.1| ATP-dependent Clp protease proteolytic subunit [Zea mays]
          Length = 260

 Score =  267 bits (682), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 120/192 (62%), Positives = 156/192 (81%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+E T+RGER+YDI+SRLLKERIV + G I D  A+L+ AQLLFLE+ENP K + 
Sbjct: 36  GLVPMVIEHTSRGERAYDIFSRLLKERIVCIHGPITDDTASLVVAQLLFLESENPAKPVH 95

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGVVTAG+AIYDTMQ+I+ P++T C+GQAASM SLLL+AG  G R ALPNAR++
Sbjct: 96  LYINSPGGVVTAGLAIYDTMQYIRSPVTTLCIGQAASMASLLLAAGASGQRRALPNARVM 155

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG SGQASDI  HA++I+K++ RLN+IY K+ G+  + +E+ ++RD  M   EA 
Sbjct: 156 IHQPSGGASGQASDIAIHAKEILKVRDRLNKIYAKHTGQAIDRIEQCMERDMFMDPEEAH 215

Query: 197 DWGVVDKVLMSR 208
           DWG++D+V+  R
Sbjct: 216 DWGLIDEVIEHR 227


>gi|145642383|ref|ZP_01797943.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae R3021]
 gi|145272926|gb|EDK12812.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae 22.4-21]
          Length = 193

 Score =  267 bits (682), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 123/193 (63%), Positives = 157/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++PMVVEQT+RGERSYDIYSRLLKER++F++G++ED MA LI AQLLFLE+E+P K+I
Sbjct: 1   MSVIPMVVEQTSRGERSYDIYSRLLKERVIFLSGEVEDRMANLIVAQLLFLESEDPTKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           ++YINSPGG VTAGMAIYDTMQFIK  I T C+GQA SMG+ LL+ G  G R ALPNAR+
Sbjct: 61  NIYINSPGGSVTAGMAIYDTMQFIKSDIRTLCIGQACSMGAFLLAGGTAGKRAALPNARV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQASDI+ HAQ+I+KIK  LN+    + G++ E +EK  DRD+ MSA EA
Sbjct: 121 MIHQPLGGFRGQASDIQIHAQEILKIKHTLNDRLAFHTGQSIERIEKDTDRDNFMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD+VL+ R
Sbjct: 181 QAYGLVDEVLVKR 193


>gi|332112672|gb|EGJ12465.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rubrivivax
           benzoatilyticus JA2]
          Length = 202

 Score =  266 bits (681), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 120/197 (60%), Positives = 157/197 (79%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E   LG+VPMV+EQ+ RGER+YDIYSRLL+ERIVF+ G + D +A L+CAQLLFLE+ENP
Sbjct: 5   ETTGLGMVPMVIEQSGRGERAYDIYSRLLRERIVFLVGPVNDQVANLVCAQLLFLESENP 64

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+ISLYINSPGG V+AG++I+DTM FIKP +ST CMG AASMGS LL AG KG RFALP
Sbjct: 65  DKDISLYINSPGGSVSAGLSIFDTMNFIKPEVSTLCMGMAASMGSFLLMAGAKGKRFALP 124

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+R+++HQPSGG  GQASDIE  A++I+K + +LN IY +  G++ E++   ++RD  +S
Sbjct: 125 NSRVMIHQPSGGAQGQASDIEIQAREIIKTREQLNRIYAERTGQSIEKIAADMERDMWLS 184

Query: 192 ASEACDWGVVDKVLMSR 208
             EA D+G++D+VL  R
Sbjct: 185 PGEAKDYGLIDQVLEKR 201


>gi|299529913|ref|ZP_07043341.1| ATP-dependent Clp protease proteolytic subunit [Comamonas
           testosteroni S44]
 gi|298722085|gb|EFI63014.1| ATP-dependent Clp protease proteolytic subunit [Comamonas
           testosteroni S44]
          Length = 201

 Score =  266 bits (681), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 117/191 (61%), Positives = 154/191 (80%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQ+ RGERS+DIYSRLL++R++F+ G++ D ++ L+CAQLLFLEAENP K I L
Sbjct: 7   LVPMVVEQSARGERSFDIYSRLLRDRVIFLNGEVNDAVSALVCAQLLFLEAENPDKPIHL 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+T+G+A+YDTMQFIK P+ T CMG A SMGS LL AGE G R A+PNA + +
Sbjct: 67  YINSPGGVITSGLAMYDTMQFIKSPVHTLCMGTARSMGSFLLMAGEPGHRMAMPNASLHV 126

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI  HA+++++ K R+  +Y ++CG++Y+EVE+ LDRD  M+A EA +
Sbjct: 127 HQPLGGVRGQASDIRIHAEEMLRTKDRVTRLYAQHCGRSYQEVERDLDRDRFMTAKEARE 186

Query: 198 WGVVDKVLMSR 208
           WG++DKVL  R
Sbjct: 187 WGLIDKVLDRR 197


>gi|116793577|gb|ABK26796.1| unknown [Picea sitchensis]
          Length = 248

 Score =  266 bits (681), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 120/192 (62%), Positives = 160/192 (83%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GL+PMV+E T+RGER+YDI+SRLLKERI+ + G I D  A+++ AQLLFLE+ENPQK I+
Sbjct: 36  GLIPMVIEHTSRGERAYDIFSRLLKERIICINGPIADETASVVVAQLLFLESENPQKPIN 95

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGGVVTAG+AIYDTMQ+IK P++T C+GQAASMGSLLL+AG  G R ALPNAR++
Sbjct: 96  MYINSPGGVVTAGLAIYDTMQYIKSPVTTLCIGQAASMGSLLLAAGSHGERRALPNARVM 155

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG SGQASDI  HA++I+K + RLN +Y K+ G+T E++E+ ++RD  MS  EA 
Sbjct: 156 IHQPSGGASGQASDIAIHAKEILKTRERLNGLYAKHTGQTIEKIEQFMERDTFMSPDEAK 215

Query: 197 DWGVVDKVLMSR 208
           ++G++D+V+  R
Sbjct: 216 EFGLIDEVIEHR 227


>gi|224030041|gb|ACN34096.1| unknown [Zea mays]
          Length = 259

 Score =  266 bits (681), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 120/192 (62%), Positives = 156/192 (81%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+E T+RGER+YDI+SRLLKERIV + G I D  A+L+ AQLLFLE+ENP K + 
Sbjct: 35  GLVPMVIEHTSRGERAYDIFSRLLKERIVCIHGPITDDTASLVVAQLLFLESENPAKPVH 94

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGVVTAG+AIYDTMQ+I+ P++T C+GQAASM SLLL+AG  G R ALPNAR++
Sbjct: 95  LYINSPGGVVTAGLAIYDTMQYIRSPVTTLCIGQAASMASLLLAAGASGERRALPNARVM 154

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG SGQASDI  HA++I+K++ RLN+IY K+ G+  + +E+ ++RD  M   EA 
Sbjct: 155 IHQPSGGASGQASDIAIHAKEILKVRDRLNKIYAKHTGQAIDRIEQCMERDMFMDPEEAH 214

Query: 197 DWGVVDKVLMSR 208
           DWG++D+V+  R
Sbjct: 215 DWGLIDEVIEHR 226


>gi|212696598|ref|ZP_03304726.1| hypothetical protein ANHYDRO_01138 [Anaerococcus hydrogenalis DSM
           7454]
 gi|325847156|ref|ZP_08169955.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|212676329|gb|EEB35936.1| hypothetical protein ANHYDRO_01138 [Anaerococcus hydrogenalis DSM
           7454]
 gi|325480936|gb|EGC83982.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 195

 Score =  266 bits (681), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 120/188 (63%), Positives = 157/188 (83%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQTNRGER+YDIYSRLLK+RI+F+TG +ED ++ +I AQLLFLE+++P K+I  
Sbjct: 7   LVPTVIEQTNRGERAYDIYSRLLKDRIIFLTGPVEDGVSDIIIAQLLFLESQDPNKDIQF 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVTAG+AIYDTM +IKP +ST C+GQAASMG++LLS+G KG RF+LPN+ IL+
Sbjct: 67  YINSPGGVVTAGLAIYDTMNYIKPDVSTICIGQAASMGAVLLSSGAKGKRFSLPNSNILI 126

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQASDI+  A+ I+KIK+RLN+I   N G+T E+++K  DRD  M A EA +
Sbjct: 127 HQPSGGAQGQASDIQIQAEQILKIKKRLNKILSDNTGQTIEKIQKDTDRDFSMDAYEAKE 186

Query: 198 WGVVDKVL 205
           +G++DKV+
Sbjct: 187 YGLIDKVI 194


>gi|149194680|ref|ZP_01871775.1| ATP-dependent Clp protease proteolytic subunit [Caminibacter
           mediatlanticus TB-2]
 gi|149135103|gb|EDM23584.1| ATP-dependent Clp protease proteolytic subunit [Caminibacter
           mediatlanticus TB-2]
          Length = 196

 Score =  266 bits (681), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 120/191 (62%), Positives = 156/191 (81%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P V+E+T RGER+YDIYSRLLK+RI+ + G+I DH A+LI AQLLFLEAENP+K+I L
Sbjct: 4   LIPTVIEKTGRGERAYDIYSRLLKDRIIMLQGEINDHTASLIVAQLLFLEAENPEKDIYL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G AIYDTM +IKP + T CMGQAASMG+ LLS+G KG RFALP+ARI++
Sbjct: 64  YINSPGGVVTSGFAIYDTMNYIKPDVVTICMGQAASMGAFLLSSGAKGKRFALPHARIMI 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE HA++I+++K+ LN+I  +N G++  ++EK  +RD  MSA EA  
Sbjct: 124 HQPLGGAQGQATDIEIHAKEILRMKKELNKILAENTGQSVRKIEKDTERDFFMSAEEAMK 183

Query: 198 WGVVDKVLMSR 208
           +G++DKVL  R
Sbjct: 184 YGLIDKVLKKR 194


>gi|301154977|emb|CBW14440.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Haemophilus parainfluenzae T3T1]
          Length = 188

 Score =  266 bits (681), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 123/188 (65%), Positives = 155/188 (82%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MVVEQT+RGERSYDIYSRLLKER++F++G++ED MA LI AQLLFLE+E+P+K+I++YIN
Sbjct: 1   MVVEQTSRGERSYDIYSRLLKERVIFLSGEVEDRMANLIVAQLLFLESEDPKKDINIYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGG VTAGMAIYDTMQFIKP + T C+GQA SMG+ LL+ G  G R ALPNAR+++HQP
Sbjct: 61  SPGGSVTAGMAIYDTMQFIKPDVRTLCIGQACSMGAFLLAGGTAGKRAALPNARVMIHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            GGF GQASDI+ HAQ+I+KIK+ LNE    + G++ E +EK  DRD+ MSA EA  +G+
Sbjct: 121 LGGFRGQASDIQIHAQEILKIKQTLNERLAFHTGQSIERIEKDTDRDNFMSAEEAKAYGL 180

Query: 201 VDKVLMSR 208
           VD VL+ R
Sbjct: 181 VDDVLIKR 188


>gi|255589435|ref|XP_002534960.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis]
 gi|223524291|gb|EEF27423.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis]
          Length = 435

 Score =  266 bits (680), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 122/205 (59%), Positives = 158/205 (77%)

Query: 4   EGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQL 63
           +G  ++  E   LG +PMV+EQ+ RGERSYDIYSRLLKER++F+ G + D  A L+ AQL
Sbjct: 228 KGMMQQRMEPQGLGYIPMVIEQSGRGERSYDIYSRLLKERVIFLVGPVNDMTANLVVAQL 287

Query: 64  LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           LFLEAENP K+ISLYINSPGG VTAGM+IYDTMQFIKP +ST C+GQAASMG+ LL+AG 
Sbjct: 288 LFLEAENPDKDISLYINSPGGSVTAGMSIYDTMQFIKPDVSTLCIGQAASMGAFLLTAGA 347

Query: 124 KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
           KG RF LPN+R+++HQP GGF GQASDIE HA++I+ +K +LN I   + G+  + +   
Sbjct: 348 KGKRFCLPNSRVMIHQPLGGFQGQASDIEIHAKEILYLKDKLNGIMAHHTGQNIDTIAND 407

Query: 184 LDRDHIMSASEACDWGVVDKVLMSR 208
            DRD+ MSA  A  +G+VD+V+ +R
Sbjct: 408 TDRDNFMSADAAKAYGLVDQVIAAR 432


>gi|312796430|ref|YP_004029352.1| ATP-dependent endopeptidase clp proteolytic subunit clpP
           [Burkholderia rhizoxinica HKI 454]
 gi|312168205|emb|CBW75208.1| ATP-dependent endopeptidase clp proteolytic subunit clpP (EC
           3.4.21.92) [Burkholderia rhizoxinica HKI 454]
          Length = 238

 Score =  266 bits (680), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 123/202 (60%), Positives = 159/202 (78%)

Query: 7   AKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
           A +D E   LGLVPMVVE + RGER+YDIYSRLLKER+VF+ G++ D  A L+ AQLLFL
Sbjct: 36  APRDFEAQALGLVPMVVETSGRGERAYDIYSRLLKERLVFLVGEVNDQAANLVVAQLLFL 95

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E+ENP K+ISLYINSPGG V+AGMAIYDTMQFIKP ++T CMG AASMG+ LL+AG KG 
Sbjct: 96  ESENPDKDISLYINSPGGSVSAGMAIYDTMQFIKPDVTTLCMGLAASMGAFLLAAGAKGK 155

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           R ALPNAR+++HQP GG  GQASDIE  A++I+ +K RLN +  ++ G+  E++++  DR
Sbjct: 156 RIALPNARVMIHQPLGGARGQASDIEIQAREILFLKERLNNLLAQHTGQPVEQIQRDTDR 215

Query: 187 DHIMSASEACDWGVVDKVLMSR 208
           D+ MSA +A  +G++D+VL  R
Sbjct: 216 DNFMSAEDAQAYGLIDQVLHKR 237


>gi|220903965|ref|YP_002479277.1| Endopeptidase Clp [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
 gi|259585948|sp|B8IYM2|CLPP_DESDA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|219868264|gb|ACL48599.1| Endopeptidase Clp [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
          Length = 202

 Score =  266 bits (680), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 116/202 (57%), Positives = 168/202 (83%), Gaps = 1/202 (0%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+PMV+E T R ER+YDIYSRLLK+RIV +  ++ D +A+LICAQLLFLE+++P+KEI
Sbjct: 1   MSLIPMVIETTGRSERAYDIYSRLLKDRIVLLGSEVNDTVASLICAQLLFLESQDPEKEI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG VTAG+AIYDT++FI  P+ST CMG+AASMG+ LL+AG+ G+R+ALPN++I
Sbjct: 61  SLYINSPGGSVTAGLAIYDTLRFISAPVSTVCMGRAASMGAFLLAAGKPGLRYALPNSQI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPS G+ GQA+DIE HA++++++K RLN I  +N G+ Y+++ K  +RD+ ++  EA
Sbjct: 121 MIHQPSAGYQGQATDIEIHAKEVLRLKERLNRILAENTGRPYKDIVKATERDNFLTPEEA 180

Query: 196 CDWGVVDKVLMSRIDI-EEKSK 216
            D G++D+VL+SR D+ +EKS+
Sbjct: 181 KDLGIIDRVLVSRQDMAQEKSE 202


>gi|303250639|ref|ZP_07336836.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302650627|gb|EFL80786.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 196

 Score =  266 bits (680), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 122/193 (63%), Positives = 156/193 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQT++GERSYDIYSRLLKERI+F+TGQ+EDHMA LI AQ+LFLEAE+P+K+I
Sbjct: 1   MALVPIVVEQTSKGERSYDIYSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVTAG+AIY TM FIKP ++T C GQA SMG+ LLS G KG RFALPNAR+
Sbjct: 61  YLYINSPGGVVTAGLAIYATMNFIKPDVATLCTGQACSMGAFLLSGGAKGKRFALPNARV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+  AQ+I+K+K  L     ++ G+ +E+V    +RD+ MSA EA
Sbjct: 121 MIHQPLGGARGQATDIQIQAQEILKLKEMLTRKMAEHSGQPFEKVAADTERDNFMSAVEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++DKVL  R
Sbjct: 181 MEYGLIDKVLTHR 193


>gi|113867496|ref|YP_725985.1| ATP-dependent Clp protease proteolytic subunit [Ralstonia eutropha
           H16]
 gi|194289504|ref|YP_002005411.1| ATP-dependent clp protease proteolytic subunit [Cupriavidus
           taiwanensis LMG 19424]
 gi|123033071|sp|Q0KBK4|CLPP_RALEH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706449|sp|B3R4W1|CLPP_CUPTR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|113526272|emb|CAJ92617.1| Endopeptidase Clp (type 1) [Ralstonia eutropha H16]
 gi|193223339|emb|CAQ69344.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
           [Cupriavidus taiwanensis LMG 19424]
          Length = 216

 Score =  266 bits (680), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 121/193 (62%), Positives = 154/193 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LGLVPMVVEQ+ RGER+YDIYSRLLKER+VF+ G++ D  A L+ AQLLFLE+ENP K++
Sbjct: 23  LGLVPMVVEQSGRGERAYDIYSRLLKERVVFMVGEVNDQTANLVVAQLLFLESENPDKDV 82

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG V+AG+AIYDTMQFIKP +ST CMG AASMG+ LL+AG KG R ALPN+RI
Sbjct: 83  SLYINSPGGSVSAGLAIYDTMQFIKPDVSTLCMGMAASMGAFLLAAGAKGKRSALPNSRI 142

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDIE  A++I+ ++ RLN I  +  G+  E++ +  DRD+ MS  +A
Sbjct: 143 MIHQPLGGARGQASDIEIQAREILYLRERLNTILSEVTGQPVEKIARDTDRDNFMSGDQA 202

Query: 196 CDWGVVDKVLMSR 208
            D+G++DKVL  R
Sbjct: 203 VDYGLIDKVLARR 215


>gi|114777030|ref|ZP_01452050.1| ATP-dependent Clp protease proteolytic subunit [Mariprofundus
           ferrooxydans PV-1]
 gi|114552551|gb|EAU55011.1| ATP-dependent Clp protease proteolytic subunit [Mariprofundus
           ferrooxydans PV-1]
          Length = 207

 Score =  266 bits (680), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 119/193 (61%), Positives = 161/193 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP VVEQT+RGER+YDI+SRLLKERIVF+ GQ++DH A LI AQLLFLE+E P K+I
Sbjct: 1   MNLVPTVVEQTSRGERAYDIFSRLLKERIVFLNGQVDDHTANLIIAQLLFLESEGPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVT+G+AIYDTMQ+I+  +ST C+GQAASMG+ LL++G  G RF+LPN+RI
Sbjct: 61  YMYINSPGGVVTSGLAIYDTMQYIRCDVSTLCIGQAASMGAHLLASGAPGKRFSLPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DIE HA++I+ +K RLNE+  K+ G+  E++   ++RD+ ++A +A
Sbjct: 121 MIHQPLGGFQGQATDIEIHAREILSLKNRLNEMMAKHTGQPIEKLADDVERDYFLTADQA 180

Query: 196 CDWGVVDKVLMSR 208
           C++G+VDKVL SR
Sbjct: 181 CEYGLVDKVLSSR 193


>gi|325922708|ref|ZP_08184448.1| ATP-dependent Clp protease proteolytic subunit ClpP [Xanthomonas
           gardneri ATCC 19865]
 gi|325546825|gb|EGD17939.1| ATP-dependent Clp protease proteolytic subunit ClpP [Xanthomonas
           gardneri ATCC 19865]
          Length = 196

 Score =  266 bits (679), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 119/188 (63%), Positives = 159/188 (84%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MVVEQT+RGER+YDIYSRLLKER++F+ G I+DHMA +I AQLLFLEA+NP+K+IS+YIN
Sbjct: 1   MVVEQTSRGERAYDIYSRLLKERLIFLVGPIDDHMANVIVAQLLFLEADNPEKDISIYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGGVVTAGMAIYDTMQ+IKP +ST C+GQAASMG+LLL++G  G R+ALPN+R+++HQP
Sbjct: 61  SPGGVVTAGMAIYDTMQYIKPDVSTICVGQAASMGALLLASGAAGKRYALPNSRVMIHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            GGF GQA+DI+ HA++I+ ++ RLNEI  K+ G++ E + +  +RD+  SA +A  +G+
Sbjct: 121 LGGFQGQATDIDIHAREILTLRSRLNEILAKHTGQSLETIGRDTERDNFKSAVDAQAYGL 180

Query: 201 VDKVLMSR 208
           VD+VL  R
Sbjct: 181 VDQVLERR 188


>gi|225075320|ref|ZP_03718519.1| hypothetical protein NEIFLAOT_00323 [Neisseria flavescens
           NRL30031/H210]
 gi|224953495|gb|EEG34704.1| hypothetical protein NEIFLAOT_00323 [Neisseria flavescens
           NRL30031/H210]
          Length = 206

 Score =  266 bits (679), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 122/197 (61%), Positives = 159/197 (80%), Gaps = 2/197 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ+ RGER++DIYSRLLKERIVF+ G + D  A L+ AQLLFLE+ENP K+I  
Sbjct: 9   LVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFF 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM+IYDTM FIKP +ST C+GQAASMG+ LLSAGEKG RFALPN+RI++
Sbjct: 69  YINSPGGSVTAGMSIYDTMNFIKPHVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMI 128

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG +GQASDIE HA++++KIK +LN +  K+C +   ++E+  DRD+ MSA EA
Sbjct: 129 HQPLISGGLAGQASDIEIHAKELLKIKEKLNRLLAKHCDRDLADLERDTDRDNYMSADEA 188

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G++D+VL +R  ++
Sbjct: 189 KEYGLIDQVLENRASLQ 205


>gi|119476204|ref|ZP_01616556.1| ATP-dependent Clp protease, proteolytic subunit ClpP [marine gamma
           proteobacterium HTCC2143]
 gi|119450831|gb|EAW32065.1| ATP-dependent Clp protease, proteolytic subunit ClpP [marine gamma
           proteobacterium HTCC2143]
          Length = 206

 Score =  265 bits (678), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 120/197 (60%), Positives = 158/197 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LGLVPMVVEQT +GERSYDIYSRLLKER++F+ GQ+ED+MA LI AQLLFLE+ENP K+I
Sbjct: 9   LGLVPMVVEQTAKGERSYDIYSRLLKERVIFMVGQVEDNMANLIVAQLLFLESENPDKDI 68

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG++IYDTMQFI+P +ST C+GQAASMG+ LL+ G KG RF LPNAR 
Sbjct: 69  HLYINSPGGSVTAGLSIYDTMQFIRPDVSTMCIGQAASMGAFLLAGGAKGKRFILPNART 128

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+DI+  A++I+ I+ RLN++  ++ G   E + +  +RD+ M+A ++
Sbjct: 129 MIHQPSGGAQGQATDIDIQAREILIIRERLNQLMAEHTGNDVETIRRDTERDNFMNADDS 188

Query: 196 CDWGVVDKVLMSRIDIE 212
             +G+VD+VL  R  +E
Sbjct: 189 KTYGLVDEVLRGRNSVE 205


>gi|241758856|ref|ZP_04756969.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
           flavescens SK114]
 gi|319638311|ref|ZP_07993074.1| ATP-dependent Clp protease proteolytic subunit [Neisseria mucosa
           C102]
 gi|241321064|gb|EER57277.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
           flavescens SK114]
 gi|317400584|gb|EFV81242.1| ATP-dependent Clp protease proteolytic subunit [Neisseria mucosa
           C102]
          Length = 206

 Score =  265 bits (678), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 122/197 (61%), Positives = 159/197 (80%), Gaps = 2/197 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ+ RGER++DIYSRLLKERIVF+ G + D  A L+ AQLLFLE+ENP K+I  
Sbjct: 9   LVPTVIEQSGRGERAFDIYSRLLKERIVFLIGPVTDESANLVVAQLLFLESENPDKDIFF 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM+IYDTM FIKP +ST C+GQAASMG+ LLSAGEKG RFALPN+RI++
Sbjct: 69  YINSPGGSVTAGMSIYDTMNFIKPHVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMI 128

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG +GQASDIE HA++++KIK +LN +  K+C +   ++E+  DRD+ MSA EA
Sbjct: 129 HQPLISGGLAGQASDIEIHAKELLKIKEKLNRLLAKHCDRDLADLERDTDRDNYMSADEA 188

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G++D+VL +R  ++
Sbjct: 189 KEYGLIDQVLENRASLQ 205


>gi|257455804|ref|ZP_05621030.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enhydrobacter
           aerosaccus SK60]
 gi|257446818|gb|EEV21835.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enhydrobacter
           aerosaccus SK60]
          Length = 224

 Score =  265 bits (678), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 120/195 (61%), Positives = 160/195 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQ+ RGERS+DIYSRLL+ER+VF+ GQ+EDHMA LI AQLLFLEAENP+K+I 
Sbjct: 29  ALVPMVVEQSARGERSFDIYSRLLRERVVFLAGQVEDHMANLIVAQLLFLEAENPEKDIH 88

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG V+AG+A++DTM FI+P +ST CMG A SMGS LL+AGEKG R+AL NAR++
Sbjct: 89  LYINSPGGSVSAGLAVFDTMNFIQPQVSTICMGGAYSMGSFLLAAGEKGKRYALANARVM 148

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  GQA+DIE +A++I+KI+ RLN+I  +  G+  E++ + ++RD+ + A EA 
Sbjct: 149 IHQPSGGAQGQATDIEINAREILKIRERLNKILAERTGQPLEKIARDVERDYWLDAQEAK 208

Query: 197 DWGVVDKVLMSRIDI 211
           ++G++D+VL  R  I
Sbjct: 209 EYGLIDEVLEKRPSI 223


>gi|224373739|ref|YP_002608111.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nautilia
           profundicola AmH]
 gi|223589486|gb|ACM93222.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nautilia
           profundicola AmH]
          Length = 196

 Score =  265 bits (678), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 118/191 (61%), Positives = 158/191 (82%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+E+T RGER+YDIYSRLLK+RI+ + G+I DH++++I AQ+LFLEAENP+K+I L
Sbjct: 4   LVPTVIEKTGRGERAYDIYSRLLKDRIIMLQGEINDHVSSIIVAQMLFLEAENPEKDIYL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+GMAIYDTM +IKP + T CMGQAASMG+ LLS+G KG RFALP+ARI++
Sbjct: 64  YINSPGGVVTSGMAIYDTMNYIKPDVVTICMGQAASMGAFLLSSGAKGKRFALPHARIMI 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE HA++I+++K+ LN+I  +N G++  ++E+  +RD  MSA EA  
Sbjct: 124 HQPLGGAQGQATDIEIHAKEILRMKKELNKILAENTGQSVRKIERDTERDFFMSAEEAMK 183

Query: 198 WGVVDKVLMSR 208
           +G++DKVL  R
Sbjct: 184 YGLIDKVLKKR 194


>gi|121997404|ref|YP_001002191.1| ATP-dependent Clp protease proteolytic subunit [Halorhodospira
           halophila SL1]
 gi|226706517|sp|A1WUM7|CLPP_HALHL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|121588809|gb|ABM61389.1| ATP-dependent Clp protease proteolytic subunit ClpP [Halorhodospira
           halophila SL1]
          Length = 210

 Score =  265 bits (678), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 118/202 (58%), Positives = 162/202 (80%), Gaps = 1/202 (0%)

Query: 8   KKDSEDVF-LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
           ++ + D+F  GLVPMVVEQ+ RGER+YDI+SRLLKER++F+ G +ED+ A L+ AQLLFL
Sbjct: 5   QQSAPDIFNTGLVPMVVEQSARGERAYDIFSRLLKERVIFLVGPVEDYQANLLVAQLLFL 64

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E+ENP K++ LYINSPGG VTAG+AIYDTMQFIKP ++T C+GQAASMG+LLL+AG +G 
Sbjct: 65  ESENPDKDVHLYINSPGGSVTAGLAIYDTMQFIKPDVATLCVGQAASMGALLLAAGAEGK 124

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           R ALPN+R+++HQP GGF GQA+DI+ HA++I+ ++ RLN I   + G+  E + +  DR
Sbjct: 125 RHALPNSRMMIHQPLGGFQGQATDIDIHAREILSMRDRLNTILAHHTGQDIETIRQDTDR 184

Query: 187 DHIMSASEACDWGVVDKVLMSR 208
           D+ M+A  A  +G++D+VL SR
Sbjct: 185 DNFMAAEAAAQYGLIDRVLTSR 206


>gi|303328063|ref|ZP_07358502.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
           sp. 3_1_syn3]
 gi|302861889|gb|EFL84824.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
           sp. 3_1_syn3]
          Length = 202

 Score =  265 bits (678), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 118/202 (58%), Positives = 167/202 (82%), Gaps = 1/202 (0%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMV+E T R ER+YDIYSRLLK+RIV +  ++ D +A+LICAQLLFLE+++P+KEI
Sbjct: 1   MSLVPMVIETTGRSERAYDIYSRLLKDRIVLLGSEVNDAVASLICAQLLFLESQDPEKEI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGG VTAG+AIYDTM++I  P++T CMG+AASMG+ LL+AGE GMRFALPN++I
Sbjct: 61  NLYINSPGGSVTAGLAIYDTMRYITSPVTTVCMGRAASMGAFLLAAGEPGMRFALPNSQI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGGF GQA+DIE HA++++++K RLN +  +N  + YE+V K  +RD+ ++  EA
Sbjct: 121 MIHQPSGGFQGQATDIEIHAREVLRLKERLNRMLAENTKRPYEDVVKATERDNFLTPEEA 180

Query: 196 CDWGVVDKVLMSRIDI-EEKSK 216
            + G++D+VL SR ++ +EKS+
Sbjct: 181 KELGIIDRVLASRREMAQEKSE 202


>gi|186475776|ref|YP_001857246.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           phymatum STM815]
 gi|184192235|gb|ACC70200.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           phymatum STM815]
          Length = 219

 Score =  265 bits (678), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 123/208 (59%), Positives = 159/208 (76%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           ++ +    +D E   LGLVP+VVE + RGERSYDIYSRLLKER+VF+ G++ D  A L+ 
Sbjct: 11  LTSQSSRDRDLEAQALGLVPIVVETSGRGERSYDIYSRLLKERVVFLVGEVNDQTANLVI 70

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE+ENP K+IS YINSPGG V+AGMAIYDTMQFIKP +ST CMG AASMG+ LL+
Sbjct: 71  AQLLFLESENPDKDISFYINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLA 130

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RFALPNAR+++HQP GG  GQASDIE  A++I+ +K RLN++   + G+  E +
Sbjct: 131 AGAKGKRFALPNARVMIHQPLGGARGQASDIEIQAREILYLKERLNQLLSHHTGQPVERI 190

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           ++  DRD+ MS  +A  +G+VD+VL  R
Sbjct: 191 QRDTDRDNFMSGDDAQAYGLVDQVLHKR 218


>gi|260892392|ref|YP_003238489.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ammonifex
           degensii KC4]
 gi|260864533|gb|ACX51639.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ammonifex
           degensii KC4]
          Length = 200

 Score =  265 bits (678), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 117/191 (61%), Positives = 161/191 (84%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+VVEQT+RGER+YDIYSRLLK+RI+F+ G I+DH+A L+ AQLLFLEAE+P+K+I L
Sbjct: 5   LVPIVVEQTSRGERAYDIYSRLLKDRIIFIGGPIDDHLANLVIAQLLFLEAEDPEKDIHL 64

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG+VTAGMAIYDTMQ+I+P +ST C+GQAASM + LL+AG KG R+ALP ARI+L
Sbjct: 65  YINSPGGLVTAGMAIYDTMQYIRPDVSTICLGQAASMAAFLLAAGAKGKRYALPYARIML 124

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQA+++E HA++I+++++ LNE+  K+ G+  E++ +  DRD  M+A +A D
Sbjct: 125 HQPLGGFQGQATEVEIHAREIMRMRQVLNELLSKHTGQPVEKIAQDTDRDFFMTAQQAKD 184

Query: 198 WGVVDKVLMSR 208
           +G++D+V+  R
Sbjct: 185 YGLIDEVITMR 195


>gi|149926126|ref|ZP_01914388.1| ATP-dependent Clp protease proteolytic subunit [Limnobacter sp.
           MED105]
 gi|149824944|gb|EDM84156.1| ATP-dependent Clp protease proteolytic subunit [Limnobacter sp.
           MED105]
          Length = 215

 Score =  265 bits (678), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 120/196 (61%), Positives = 154/196 (78%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VPMV+EQ+ RGER+YDIYSRLLKER++F+ G I D MA +I AQ+LFLE+ENP K+I+LY
Sbjct: 19  VPMVIEQSGRGERAYDIYSRLLKERVIFLVGPINDQMANVIVAQMLFLESENPDKDIALY 78

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG V+AGMAIYDTMQFIKP +ST C G AASMG+ LLS+G KG RF+LPN+RI++H
Sbjct: 79  INSPGGSVSAGMAIYDTMQFIKPDVSTLCTGLAASMGAFLLSSGTKGKRFSLPNSRIMIH 138

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQASDIE HA++I+ ++ +LN I   N GKT EE+ +  DRD+ M A  A ++
Sbjct: 139 QPLGGVQGQASDIEIHAKEILYLREKLNGILADNTGKTIEEIARDTDRDNFMGADSAKEY 198

Query: 199 GVVDKVLMSRIDIEEK 214
           G++D VL  R+   +K
Sbjct: 199 GLIDDVLKHRVPPADK 214


>gi|126727090|ref|ZP_01742927.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Rhodobacterales bacterium HTCC2150]
 gi|126703518|gb|EBA02614.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Rhodobacterales bacterium HTCC2150]
          Length = 209

 Score =  265 bits (677), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 121/191 (63%), Positives = 158/191 (82%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V E T+RG   YDI+SRLLKERI+FV+G + D MAT I AQLLFLEA+NP KEI++
Sbjct: 12  VIPTVEETTSRGSIRYDIFSRLLKERIIFVSGPVHDEMATTIVAQLLFLEADNPTKEIAM 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G++IYDTMQ+IKP +ST C+GQAASMGSLLL+AGE GMR++LPN+RI++
Sbjct: 72  YINSPGGVVTSGLSIYDTMQYIKPKVSTVCIGQAASMGSLLLAAGEPGMRYSLPNSRIMV 131

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG+ GQA+DI  HA +  K+K RLN IYVK+ G+T ++V   L+RD+ MSA EA  
Sbjct: 132 HQPSGGYQGQATDIMIHAAETQKLKDRLNGIYVKHTGQTMKKVVDGLERDNFMSAEEAKS 191

Query: 198 WGVVDKVLMSR 208
           WG+VD+++ +R
Sbjct: 192 WGLVDEIVENR 202


>gi|34498013|ref|NP_902228.1| ATP-dependent Clp protease proteolytic subunit [Chromobacterium
           violaceum ATCC 12472]
 gi|60389718|sp|Q7NUY9|CLPP_CHRVO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|34103868|gb|AAQ60228.1| ATP-dependent Clp protease proteolytic subunit [Chromobacterium
           violaceum ATCC 12472]
          Length = 210

 Score =  265 bits (677), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 122/199 (61%), Positives = 157/199 (78%), Gaps = 3/199 (1%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LGLVPMVVEQ+ RGER+YDIYSRLLKERIVF+ G + D  A L+ AQ+LFLE+ENP K+I
Sbjct: 10  LGLVPMVVEQSGRGERAYDIYSRLLKERIVFLVGPVTDESANLVVAQMLFLESENPDKDI 69

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG +TAGM+IYDTM FIKP +ST C+GQAASMG+ LL+AG  G RFAL N+R+
Sbjct: 70  HFYINSPGGSITAGMSIYDTMNFIKPDVSTLCIGQAASMGAFLLAAGTHGKRFALENSRV 129

Query: 136 LLHQP---SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           ++HQP    GG SGQ +DIE HA+++VK+K ++NE+  K+ G+T E V+   +RD+ MSA
Sbjct: 130 MIHQPLLYGGGLSGQVTDIEIHARELVKVKAKMNELLAKHSGQTLERVQSDTERDNFMSA 189

Query: 193 SEACDWGVVDKVLMSRIDI 211
            EA  +G++DKVL SR D+
Sbjct: 190 EEARAYGMIDKVLSSRRDV 208


>gi|256544468|ref|ZP_05471841.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Anaerococcus
           vaginalis ATCC 51170]
 gi|256399793|gb|EEU13397.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Anaerococcus
           vaginalis ATCC 51170]
          Length = 195

 Score =  265 bits (677), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 118/188 (62%), Positives = 157/188 (83%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQTNRGER+YDIYSRLLK+RI+F+TG +ED ++ +I AQLLFLE+++P K+I  
Sbjct: 7   LVPTVIEQTNRGERAYDIYSRLLKDRIIFLTGPVEDGVSDIIIAQLLFLESQDPNKDIQF 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVTAG+AIYDTM +IKP +ST C+GQAASMG++LLS+G KG RF+LPN+ IL+
Sbjct: 67  YINSPGGVVTAGLAIYDTMNYIKPDVSTICIGQAASMGAVLLSSGAKGKRFSLPNSNILI 126

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQASDI+  A+ I+K+K+RLN+I   N G++ E+++K  DRD  M A EA +
Sbjct: 127 HQPSGGAQGQASDIQIQAEQILKMKKRLNKILADNTGQSIEKIQKDTDRDFAMDAYEAKE 186

Query: 198 WGVVDKVL 205
           +G++DKV+
Sbjct: 187 YGLIDKVI 194


>gi|225848210|ref|YP_002728373.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644423|gb|ACN99473.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 202

 Score =  265 bits (677), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 120/191 (62%), Positives = 157/191 (82%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+V+EQT RGER+YDIYSRLLK+RI+ +   I+DH+A LI AQLLFLEAE+P+K+I +
Sbjct: 8   LVPIVIEQTPRGERAYDIYSRLLKDRIILLGTPIDDHVANLIVAQLLFLEAEDPEKDIYM 67

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVTAG AIYDTM +IKP + T C+GQAASMG+ LLSAG KG R++LPNARI++
Sbjct: 68  YINSPGGVVTAGFAIYDTMNYIKPDVVTICIGQAASMGAFLLSAGAKGKRYSLPNARIMI 127

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQA+DIE HA++I+++KR LNE   K+ G+  E++E   +RD+ MSA EA +
Sbjct: 128 HQPLGGFQGQATDIEIHAREILRLKRMLNEYLAKHTGQPIEKIEADTERDYFMSAEEAKE 187

Query: 198 WGVVDKVLMSR 208
           +G++DKV+  R
Sbjct: 188 YGLIDKVIYKR 198


>gi|222087754|ref|YP_002546291.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Agrobacterium
           radiobacter K84]
 gi|221725202|gb|ACM28358.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Agrobacterium
           radiobacter K84]
          Length = 214

 Score =  265 bits (676), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 114/193 (59%), Positives = 156/193 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMV+EQ++RGERS+DIYSRLL+ERI+F+ G++ D ++ L+CAQLLFLEAEN +K I
Sbjct: 12  MQLVPMVIEQSSRGERSFDIYSRLLRERIIFLNGEVNDTVSALVCAQLLFLEAENSRKPI 71

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGGVVT+G+A+YDTM++I+ P+ T CMG A SMGS LL AG+ G R ALPN+ I
Sbjct: 72  SLYINSPGGVVTSGLAMYDTMRYIRAPVHTLCMGTARSMGSFLLMAGQAGERSALPNSSI 131

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
            +HQP GGF GQASD+  HA ++ + K R+  +Y ++CG+TYEE E+ +DRDH M+A +A
Sbjct: 132 HIHQPLGGFQGQASDMLIHAAEMERTKHRMTRLYAEHCGRTYEEFERAMDRDHFMTAEQA 191

Query: 196 CDWGVVDKVLMSR 208
            +WG++D++L  R
Sbjct: 192 LEWGLIDRILQVR 204


>gi|171463607|ref|YP_001797720.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Polynucleobacter necessarius subsp. necessarius STIR1]
 gi|171193145|gb|ACB44106.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Polynucleobacter necessarius subsp. necessarius STIR1]
          Length = 209

 Score =  265 bits (676), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 121/208 (58%), Positives = 159/208 (76%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           M +     ++ E   LGLVPMV+E + RGER+YDIYSRLL+ER++F+ G++ D  A L+ 
Sbjct: 1   MIYNHSQSENLEPKGLGLVPMVIETSGRGERAYDIYSRLLRERVIFLVGEVNDQTANLVI 60

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE+ENP KEISLYINSPGG V+AG+AIYDTMQFIKP +ST CMG AASMG+ LL 
Sbjct: 61  AQLLFLESENPDKEISLYINSPGGAVSAGLAIYDTMQFIKPHVSTLCMGMAASMGAFLLC 120

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AGE G R+ALPN+R+++HQP GG  GQASDIE  A++I+ ++ RLN+I     G++ E +
Sbjct: 121 AGENGKRYALPNSRVMIHQPLGGARGQASDIEIQAREILYLRERLNKILADRTGQSIETI 180

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
            K  DRD+ MSA +A D+G++DKV+  R
Sbjct: 181 AKDTDRDNFMSAEQARDYGLIDKVIEKR 208


>gi|307544936|ref|YP_003897415.1| ATP-dependent Clp protease proteolytic subunit [Halomonas elongata
           DSM 2581]
 gi|307216960|emb|CBV42230.1| ATP-dependent Clp protease proteolytic subunit [Halomonas elongata
           DSM 2581]
          Length = 206

 Score =  265 bits (676), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 118/192 (61%), Positives = 155/192 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMVVEQ+ RGERSYDIYSRLLKER++F+ G +ED+ A L+ AQLLFLE+ENP K+I 
Sbjct: 12  GLVPMVVEQSARGERSYDIYSRLLKERVIFLVGPVEDYTANLLVAQLLFLESENPDKDIH 71

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQAASMG+LLL+ G  G R+ LPN+R++
Sbjct: 72  LYINSPGGSVTAGMSIYDTMQFIKPDVSTVCIGQAASMGALLLAGGAHGKRYCLPNSRMM 131

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG+ GQASDIE H ++I+ I+ RLN+I   + G+ +E + K  DRD+ M+ ++A 
Sbjct: 132 IHQPLGGYQGQASDIEIHTREILGIRERLNQILAHHTGQKFETIAKDTDRDNFMNGAQAA 191

Query: 197 DWGVVDKVLMSR 208
           ++G++D VL  R
Sbjct: 192 EYGLIDAVLDKR 203


>gi|282883083|ref|ZP_06291683.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Peptoniphilus
           lacrimalis 315-B]
 gi|300813694|ref|ZP_07094016.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Peptoniphilus
           sp. oral taxon 836 str. F0141]
 gi|281297060|gb|EFA89556.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Peptoniphilus
           lacrimalis 315-B]
 gi|300512236|gb|EFK39414.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Peptoniphilus
           sp. oral taxon 836 str. F0141]
          Length = 194

 Score =  265 bits (676), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 119/193 (61%), Positives = 158/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQTNRGERSYDIYSRLLK+RI+F +G++ D MA LI AQLLFLE+E+P K+I
Sbjct: 1   MALVPMVVEQTNRGERSYDIYSRLLKDRIIFASGEVNDTMADLIVAQLLFLESEDPNKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG V+AG+AIYDTMQ+IKP +ST C+G AASMG++LLS+G KG RFALPN+ I
Sbjct: 61  QLYINSPGGSVSAGLAIYDTMQYIKPDVSTICIGMAASMGAILLSSGAKGKRFALPNSDI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  G A+DI+  A+ I+K ++ LN+I  KN G+  E++E+  DRD  + A+EA
Sbjct: 121 MIHQPSGGTQGMATDIQITAEKILKTRKSLNQILAKNTGQKLEKIERDADRDFWLDANEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++DKV+ +R
Sbjct: 181 KEYGLIDKVIENR 193


>gi|261380957|ref|ZP_05985530.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
           subflava NJ9703]
 gi|284796216|gb|EFC51563.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
           subflava NJ9703]
          Length = 206

 Score =  265 bits (676), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 122/197 (61%), Positives = 158/197 (80%), Gaps = 2/197 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ+ RGER++DIYSRLLKERIVF+ G + D  A L+ AQLLFLE+ENP K+I  
Sbjct: 9   LVPTVIEQSGRGERAFDIYSRLLKERIVFLIGPVTDESANLVVAQLLFLESENPDKDIFF 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM+IYDTM FIKP +ST C+GQAASMG+ LLSAGEKG RFALPN+RI++
Sbjct: 69  YINSPGGSVTAGMSIYDTMNFIKPHVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMI 128

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG +GQASDIE HA++++KIK +LN +  K+C +   ++E+  DRD+ MSA EA
Sbjct: 129 HQPLISGGLAGQASDIEIHAKELLKIKEKLNRLLAKHCDRDLADLERDTDRDNYMSADEA 188

Query: 196 CDWGVVDKVLMSRIDIE 212
             +G++D+VL +R  ++
Sbjct: 189 KKYGLIDQVLENRASLQ 205


>gi|304407481|ref|ZP_07389133.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
           curdlanolyticus YK9]
 gi|304343432|gb|EFM09274.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
           curdlanolyticus YK9]
          Length = 193

 Score =  265 bits (676), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 121/192 (63%), Positives = 157/192 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQTNRGERSYDIYSRLLK+RI+F+   I+D +A  I AQLLFL A++P+K+I
Sbjct: 1   MNLVPIVVEQTNRGERSYDIYSRLLKDRIIFLGSAIDDDVANSIIAQLLFLAADDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGM I+DTMQFIKP +ST C+G AASMGSLLL+AG KG RF+LPN+ +
Sbjct: 61  HLYINSPGGSVTAGMGIFDTMQFIKPDVSTICVGMAASMGSLLLTAGAKGKRFSLPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDI+ HA  I+K K++LN+IYV+  G+ YE++E+  DRD+ +SA EA
Sbjct: 121 MIHQPLGGVRGQASDIKIHADWIIKTKQKLNQIYVERTGQPYEKIERDTDRDNFLSAEEA 180

Query: 196 CDWGVVDKVLMS 207
             +G++DKV+ S
Sbjct: 181 VAYGLIDKVVTS 192


>gi|325983082|ref|YP_004295484.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nitrosomonas
           sp. AL212]
 gi|325532601|gb|ADZ27322.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nitrosomonas
           sp. AL212]
          Length = 213

 Score =  265 bits (676), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 120/202 (59%), Positives = 161/202 (79%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D E   LGL+PMV+E + RGER+YDIYSRLLKER+VF+ G + +  A L+ AQ LFLE+
Sbjct: 9   RDMEPKNLGLIPMVIETSGRGERAYDIYSRLLKERVVFLVGPVTEASANLVVAQFLFLES 68

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           EN +K+I  YINSPGG+V+AG+A+YDTMQ+IKP +ST C+GQAASMG+LLL+AG KG R+
Sbjct: 69  ENSEKDIFFYINSPGGMVSAGLAVYDTMQYIKPDVSTLCIGQAASMGALLLTAGAKGKRY 128

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
            LPN+R+++HQP GGF GQASDIE HA++I+ +K RLNEI  K+  +   ++EK  DRD+
Sbjct: 129 CLPNSRVMIHQPLGGFQGQASDIEIHAREILYLKSRLNEIMAKHTERPVSDLEKDTDRDN 188

Query: 189 IMSASEACDWGVVDKVLMSRID 210
            MSA+E+ ++G+VD VL SR D
Sbjct: 189 FMSATESVNYGLVDAVLSSRND 210


>gi|237755491|ref|ZP_04584113.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692355|gb|EEP61341.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 201

 Score =  265 bits (676), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 118/191 (61%), Positives = 157/191 (82%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P+V+EQT RGER+YDIYSRLLK+RI+ +   I+DH+A L+ AQLLFLE+E+P K+I +
Sbjct: 8   LIPIVIEQTPRGERAYDIYSRLLKDRIILLGTPIDDHIANLVVAQLLFLESEDPDKDIYM 67

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVTAG+AIYDTM +IKP + T CMGQAASMG+ LLSAG KG R++LPNARI++
Sbjct: 68  YINSPGGVVTAGLAIYDTMNYIKPDVVTICMGQAASMGAFLLSAGAKGKRYSLPNARIMI 127

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQA+DIE HA++I+++KR LNE   K+ G+  E++E   +RD+ MSA EA +
Sbjct: 128 HQPLGGFQGQATDIEIHAKEILRLKRMLNEYLAKHTGQPIEKIEADTERDYFMSAEEAKE 187

Query: 198 WGVVDKVLMSR 208
           +G++DKV+  R
Sbjct: 188 YGLIDKVIYKR 198


>gi|194366563|ref|YP_002029173.1| ATP-dependent Clp protease proteolytic subunit [Stenotrophomonas
           maltophilia R551-3]
 gi|194349367|gb|ACF52490.1| Endopeptidase Clp [Stenotrophomonas maltophilia R551-3]
          Length = 202

 Score =  265 bits (676), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 115/191 (60%), Positives = 156/191 (81%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+PMVVE++ RGERSYDIYSRLL+ERI+F+ G+++D ++ L+CAQLLFLE+ENP+K I L
Sbjct: 7   LIPMVVERSERGERSYDIYSRLLRERIIFLNGEVDDTVSALVCAQLLFLESENPEKPIHL 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+++G+A+YDTMQ+I  P+ T CMG A SMGS LL AGE G R AL NA + +
Sbjct: 67  YINSPGGVISSGLAMYDTMQYISAPVHTLCMGTARSMGSFLLMAGEPGHRAALANASLHV 126

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI  HA+++ + K+R+  +Y ++CG++ EEVE+TLDRD  MSA +AC+
Sbjct: 127 HQPLGGVQGQASDIFIHAEEMQRTKQRITRLYAQHCGRSVEEVEQTLDRDRFMSAEQACE 186

Query: 198 WGVVDKVLMSR 208
           WG++D+VL+ R
Sbjct: 187 WGLIDQVLLRR 197


>gi|51246390|ref|YP_066274.1| ATP-dependent Clp protease, proteolytic subunit (ClpP)
           [Desulfotalea psychrophila LSv54]
 gi|50877427|emb|CAG37267.1| probable ATP-dependent Clp protease, proteolytic subunit (ClpP)
           [Desulfotalea psychrophila LSv54]
          Length = 213

 Score =  265 bits (676), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 121/199 (60%), Positives = 161/199 (80%)

Query: 14  VFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQK 73
           V + L+PMVVEQT RGERSYDIYSRLLKERI+F+   + D +A +I AQLLFLEAE+P+K
Sbjct: 9   VIMNLIPMVVEQTPRGERSYDIYSRLLKERIIFLGSGVNDDVANVIVAQLLFLEAEDPEK 68

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I+ YINSPGG VTAGMAIYDTMQ+IK  I+T CMGQAASMG++LL+AG  G R+ALPN+
Sbjct: 69  DITFYINSPGGSVTAGMAIYDTMQYIKCDIATLCMGQAASMGAVLLAAGTAGKRYALPNS 128

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           RI++HQP GGF GQA+DIE H ++I++I++ LN I   + GKT +++E   +RD+ MS+ 
Sbjct: 129 RIMIHQPLGGFQGQATDIEIHTKEILRIRKDLNNILAHHTGKTLKKIESDTERDNFMSSV 188

Query: 194 EACDWGVVDKVLMSRIDIE 212
           EA  +G++D+VL+ R D+E
Sbjct: 189 EAQKYGLIDEVLVKREDVE 207


>gi|238026973|ref|YP_002911204.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia glumae
           BGR1]
 gi|237876167|gb|ACR28500.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia glumae
           BGR1]
          Length = 217

 Score =  265 bits (676), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 123/202 (60%), Positives = 157/202 (77%)

Query: 7   AKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
           A +D E   LGLVP+VVE + RGERSYDIYSRLLKERIVF+ G++ D  A L+ AQLLFL
Sbjct: 15  APQDFETKALGLVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFL 74

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E+ENP K+ISLYINSPGG V+AG+AIYDTMQFIKP +ST CMG AASMG+ LLS+G KG 
Sbjct: 75  ESENPDKDISLYINSPGGSVSAGLAIYDTMQFIKPDVSTLCMGLAASMGAFLLSSGAKGK 134

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           R+ALPNAR+++HQP GG  GQASDIE  A++I+ ++ RLN+I  +N G+  E + +  DR
Sbjct: 135 RYALPNARVMIHQPLGGARGQASDIEIQAREILYLRERLNKILAENTGQDVERIARDTDR 194

Query: 187 DHIMSASEACDWGVVDKVLMSR 208
           D+ MS+ +A  +G++D V   R
Sbjct: 195 DNFMSSDDAKAYGLIDHVSAKR 216


>gi|330817271|ref|YP_004360976.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           gladioli BSR3]
 gi|327369664|gb|AEA61020.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           gladioli BSR3]
          Length = 217

 Score =  265 bits (676), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 123/202 (60%), Positives = 156/202 (77%)

Query: 7   AKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
           A +D E   LGLVP+VVE + RGERSYDIYSRLLKERIVF+ G++ D  A L+ AQLLFL
Sbjct: 15  APQDFETKALGLVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFL 74

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E+ENP K+ISLYINSPGG V+AG+AIYDTMQFIKP +ST CMG AASMG+ LLS+G KG 
Sbjct: 75  ESENPDKDISLYINSPGGSVSAGLAIYDTMQFIKPDVSTLCMGLAASMGAFLLSSGAKGK 134

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           R+ALPNAR+++HQP GG  GQASDIE  A++I+ ++ RLN+I   N G+  E + +  DR
Sbjct: 135 RYALPNARVMIHQPLGGARGQASDIEIQAREILYLRERLNKILADNTGQDVERIARDTDR 194

Query: 187 DHIMSASEACDWGVVDKVLMSR 208
           D+ MS+ +A  +G++D V   R
Sbjct: 195 DNFMSSDDAKAYGLIDHVTAKR 216


>gi|188996270|ref|YP_001930521.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931337|gb|ACD65967.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 201

 Score =  265 bits (676), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 118/191 (61%), Positives = 157/191 (82%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P+V+EQT RGER+YDIYSRLLK+RI+ +   I+DH+A L+ AQLLFLE+E+P K+I +
Sbjct: 8   LIPIVIEQTPRGERAYDIYSRLLKDRIILLGTPIDDHIANLVVAQLLFLESEDPDKDIYM 67

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVTAG+AIYDTM +IKP + T CMGQAASMG+ LLSAG KG R++LPNARI++
Sbjct: 68  YINSPGGVVTAGLAIYDTMNYIKPDVVTICMGQAASMGAFLLSAGAKGKRYSLPNARIMI 127

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQA+DIE HA++I+++KR LNE   K+ G+  E++E   +RD+ MSA EA +
Sbjct: 128 HQPLGGFQGQATDIEIHAREILRLKRMLNEYLAKHTGQPIEKIEADTERDYFMSAEEAKE 187

Query: 198 WGVVDKVLMSR 208
           +G++DKV+  R
Sbjct: 188 YGLIDKVIYKR 198


>gi|148553517|ref|YP_001261099.1| ATP-dependent Clp protease proteolytic subunit [Sphingomonas
           wittichii RW1]
 gi|148498707|gb|ABQ66961.1| Endopeptidase Clp [Sphingomonas wittichii RW1]
          Length = 218

 Score =  265 bits (676), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 119/192 (61%), Positives = 157/192 (81%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVP+V+EQ+NRGERS+DIYSRLL+ERI+FVTGQ+EDHMA+LI AQLLFLE+ENP+K+I 
Sbjct: 17  ALVPVVIEQSNRGERSFDIYSRLLRERIIFVTGQVEDHMASLITAQLLFLESENPKKDIF 76

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGGVVTAG+AI+DTMQ+I+P + T C+GQAASMGS LL+AGE GMR AL N+RI+
Sbjct: 77  MYINSPGGVVTAGLAIHDTMQYIRPRVGTVCIGQAASMGSFLLAAGEPGMRVALTNSRIM 136

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  G A+DIE  A++I++++ RLN +Y K   +  E +E  +DRD  + A EA 
Sbjct: 137 VHQPSGGAQGMAADIEIQAREILRMRHRLNSLYAKYTKQPIEAIEAAMDRDKFLEADEAK 196

Query: 197 DWGVVDKVLMSR 208
            +G++D+V   R
Sbjct: 197 AFGLIDEVFDKR 208


>gi|88810607|ref|ZP_01125864.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nitrococcus
           mobilis Nb-231]
 gi|88792237|gb|EAR23347.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nitrococcus
           mobilis Nb-231]
          Length = 214

 Score =  265 bits (676), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 118/203 (58%), Positives = 158/203 (77%)

Query: 6   CAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF 65
            + +  E +  GLVPMVVEQT RGER+YDIYSRLLKER++F+ G +EDH A L+ AQLLF
Sbjct: 4   SSDRRHEPMATGLVPMVVEQTARGERAYDIYSRLLKERVIFLVGPVEDHQANLLIAQLLF 63

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           LE+ENP K+I LYINSPGGVV+AG+AIYDTMQF+KP +ST C+GQAASMG+LLL+ G  G
Sbjct: 64  LESENPDKDIHLYINSPGGVVSAGLAIYDTMQFVKPDVSTVCLGQAASMGALLLTGGAAG 123

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
            R+ LPN+RI++HQP GGF GQA+D+E HA++I+ ++ RLN+I  ++ G+  E +++  +
Sbjct: 124 KRYCLPNSRIMIHQPLGGFQGQATDVEIHAREILAMRERLNQILAQHTGQDIETIQQDTE 183

Query: 186 RDHIMSASEACDWGVVDKVLMSR 208
           RD+ M    A  +G+VD VL  R
Sbjct: 184 RDNFMGPEAAQSYGIVDGVLRDR 206


>gi|222055723|ref|YP_002538085.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacter sp.
           FRC-32]
 gi|254763790|sp|B9M0Y1|CLPP_GEOSF RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|221565012|gb|ACM20984.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacter sp.
           FRC-32]
          Length = 199

 Score =  264 bits (675), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 117/188 (62%), Positives = 157/188 (83%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+VVEQT RGERSYDIYSRLLK+RI+F+ G I+D ++ L+ AQLLFLEAE+P K+I L
Sbjct: 2   LVPIVVEQTGRGERSYDIYSRLLKDRIIFLGGAIDDTVSNLVIAQLLFLEAEDPDKDIHL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVTAGMAIYDTM++IK P+ST C+GQAASMG+ LLS GEKG RF+L N+RI++
Sbjct: 62  YINSPGGVVTAGMAIYDTMRYIKAPVSTICVGQAASMGAFLLSGGEKGKRFSLANSRIMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQA+DI  HAQ+I+++K++LNE+  ++ G+T E++E   +RD+ MS  +A  
Sbjct: 122 HQPLGGFQGQATDIHIHAQEILRMKKKLNELLAEHSGQTVEKIEADTERDYFMSGEDAKT 181

Query: 198 WGVVDKVL 205
           +G++D ++
Sbjct: 182 YGIIDSII 189


>gi|160947717|ref|ZP_02094884.1| hypothetical protein PEPMIC_01652 [Parvimonas micra ATCC 33270]
 gi|158446851|gb|EDP23846.1| hypothetical protein PEPMIC_01652 [Parvimonas micra ATCC 33270]
          Length = 192

 Score =  264 bits (675), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 118/190 (62%), Positives = 157/190 (82%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+PMVVEQTNRGERSYDIYSRLLKERI+F++G++ D MA LI AQLLFLE+E+P+K+I
Sbjct: 1   MALIPMVVEQTNRGERSYDIYSRLLKERIIFLSGEVNDQMADLIVAQLLFLESEDPKKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG V+AG+AIYDTMQ+IKP +ST C+G+AASMG+ LL++G KG RFALPNA I
Sbjct: 61  QIYINSPGGSVSAGLAIYDTMQYIKPDVSTICIGRAASMGAFLLTSGAKGKRFALPNADI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA DI+  AQ I++++  LNEI  K  G++ +++EK  DRD  MSA EA
Sbjct: 121 MIHQPLGGAQGQAEDIKIQAQKILQVRATLNEILAKRTGQSLKKIEKDTDRDFYMSAYEA 180

Query: 196 CDWGVVDKVL 205
            ++G++D+V+
Sbjct: 181 KEYGIIDEVI 190


>gi|115459516|ref|NP_001053358.1| Os04g0525600 [Oryza sativa Japonica Group]
 gi|113564929|dbj|BAF15272.1| Os04g0525600 [Oryza sativa Japonica Group]
 gi|215768496|dbj|BAH00725.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 309

 Score =  264 bits (675), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 119/192 (61%), Positives = 156/192 (81%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+E T+RGER+YDI+SRLLKERIV + G I D  A+L+ AQLLFLE+ENP K + 
Sbjct: 85  GLVPMVIEHTSRGERAYDIFSRLLKERIVCIHGPITDDTASLVVAQLLFLESENPAKPVH 144

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGVVTAG+AIYDTMQ+I+ P++T C+GQAASM SLLL+AG +G R ALPNAR++
Sbjct: 145 LYINSPGGVVTAGLAIYDTMQYIRSPVTTLCIGQAASMASLLLAAGARGERRALPNARVM 204

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG SGQASDI  HA++I+K++ RLN+IY K+  +  + +E+ ++RD  M   EA 
Sbjct: 205 IHQPSGGASGQASDIAIHAKEILKVRDRLNKIYAKHTSQAIDRIEQCMERDMFMDPEEAH 264

Query: 197 DWGVVDKVLMSR 208
           DWG++D+V+  R
Sbjct: 265 DWGLIDEVIEHR 276


>gi|18203149|sp|Q9JZ38|CLPP_NEIMB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|316984112|gb|EFV63090.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
           meningitidis H44/76]
 gi|325140464|gb|EGC62985.1| endopeptidase Clp [Neisseria meningitidis CU385]
 gi|325200063|gb|ADY95518.1| endopeptidase Clp [Neisseria meningitidis H44/76]
 gi|325205915|gb|ADZ01368.1| endopeptidase Clp [Neisseria meningitidis M04-240196]
          Length = 204

 Score =  264 bits (675), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 121/193 (62%), Positives = 156/193 (80%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ+ RGER++DIYSRLLKERIVF+ G + D  A L+ AQLLFLE+ENP K+I  
Sbjct: 7   LVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFF 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM+IYDTM FIKP +ST C+GQAASMG+ LLSAGEKG RFALPN+RI++
Sbjct: 67  YINSPGGSVTAGMSIYDTMNFIKPDVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMI 126

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASDIE HA++++KIK +LN +  K+C +   ++E+  DRD+ MSA EA
Sbjct: 127 HQPLISGGLGGQASDIEIHARELLKIKEKLNRLMAKHCDRDLADLERDTDRDNFMSAEEA 186

Query: 196 CDWGVVDKVLMSR 208
            ++G++D++L +R
Sbjct: 187 KEYGLIDQILENR 199


>gi|78066693|ref|YP_369462.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia sp.
           383]
 gi|167586932|ref|ZP_02379320.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           ubonensis Bu]
 gi|90101404|sp|Q39FE8|CLPP_BURS3 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|77967438|gb|ABB08818.1| ATP-dependent Clp protease proteolytic subunit ClpP [Burkholderia
           sp. 383]
          Length = 217

 Score =  264 bits (675), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 119/193 (61%), Positives = 156/193 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LGLVP+VVE + RGERSYDIYSRLLKER+VF+ G++ D  A L+ AQLLFLE+ENP K+I
Sbjct: 24  LGLVPIVVETSGRGERSYDIYSRLLKERLVFMVGEVNDQTANLVVAQLLFLESENPDKDI 83

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG V+AGMAIYDTMQFIKP +ST CMG AASMG+ LL++G KG RFALPN+R+
Sbjct: 84  SLYINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRV 143

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDIE  A++I+ +K RLN++  ++ G+  E + +  DRD+ MS+ +A
Sbjct: 144 MIHQPLGGARGQASDIEIQAREILYLKERLNQLLAQHTGQDVERIARDTDRDNFMSSEDA 203

Query: 196 CDWGVVDKVLMSR 208
             +G++D+VL+ R
Sbjct: 204 KAYGLIDQVLLKR 216


>gi|86357052|ref|YP_468944.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli CFN
           42]
 gi|116243105|sp|Q2KAB9|CLPP1_RHIEC RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|86281154|gb|ABC90217.1| endopeptidase Clp, subunit 1 protein [Rhizobium etli CFN 42]
          Length = 202

 Score =  264 bits (675), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 116/193 (60%), Positives = 159/193 (82%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMV+EQ++RGERS+DIYSRLL+ERI+F+ G++ D ++ L+CAQLLFLEA +P+K I+L
Sbjct: 7   LVPMVIEQSSRGERSFDIYSRLLRERIIFLNGEVNDTVSALVCAQLLFLEA-DPEKPINL 65

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VT+G+A+YDTM+FI+ P+ T CMG A SMGS LL AGE G R ALPNA IL+
Sbjct: 66  YINSPGGAVTSGLAMYDTMRFIRAPVHTLCMGTARSMGSFLLMAGEPGERAALPNASILI 125

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGGF GQASD+  HA++I+K K+R+  +Y ++CG++YE+ E+ +DRD  M+A EA +
Sbjct: 126 HQPSGGFQGQASDMLIHAEEILKTKQRMTRLYAEHCGRSYEDFERGMDRDRFMTAEEALE 185

Query: 198 WGVVDKVLMSRID 210
           WG+++++L  R D
Sbjct: 186 WGLIERILKVRED 198


>gi|82703457|ref|YP_413023.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nitrosospira
           multiformis ATCC 25196]
 gi|110816459|sp|Q2Y6J0|CLPP_NITMU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|82411522|gb|ABB75631.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nitrosospira
           multiformis ATCC 25196]
          Length = 213

 Score =  264 bits (675), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 119/201 (59%), Positives = 160/201 (79%)

Query: 8   KKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           +++ E   LGL+PMV+E + RGER+YDIYSRLL+ER++F+ G + +  A LI AQLLFLE
Sbjct: 8   QRNHEPQDLGLIPMVIETSGRGERAYDIYSRLLRERVIFLVGPVTEASANLIVAQLLFLE 67

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           +EN  K+I  YINSPGG+V+AGMA+YDTMQFIKP +ST C+GQAASMGSLLL+AG KG R
Sbjct: 68  SENADKDIHFYINSPGGLVSAGMAVYDTMQFIKPDVSTLCIGQAASMGSLLLAAGAKGKR 127

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           F LPN+R+++HQP GGF GQASDIE HA++I+ +K RLNE+  K+ G++ E +E+  DRD
Sbjct: 128 FCLPNSRVMIHQPLGGFQGQASDIEIHAREILYLKNRLNELLSKHTGQSMETIERDTDRD 187

Query: 188 HIMSASEACDWGVVDKVLMSR 208
           + + A ++  +G+VD VL SR
Sbjct: 188 NFLGAEDSVKYGLVDAVLTSR 208


>gi|284097335|ref|ZP_06385465.1| Peptidase S14, ClpP [Candidatus Poribacteria sp. WGA-A3]
 gi|283831154|gb|EFC35134.1| Peptidase S14, ClpP [Candidatus Poribacteria sp. WGA-A3]
          Length = 203

 Score =  264 bits (675), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 115/189 (60%), Positives = 160/189 (84%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+PMV+E TNRGER+YDIYSRLLK+RI+F+   I+D  + LI AQLLFLEAE+P+K+I+L
Sbjct: 2   LIPMVIESTNRGERAYDIYSRLLKDRIIFLGAPIDDIFSNLIIAQLLFLEAEDPEKDINL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM IYDTMQ++KPPI+T C+GQAASMG+LLL+AG +G R ALPNAR+++
Sbjct: 62  YINSPGGSVTAGMGIYDTMQYVKPPITTICLGQAASMGALLLAAGTQGKRHALPNARVMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQA++I+ HA++I+KI+ RLN+I  ++ G+  E++ +  +RD+ MS +EA D
Sbjct: 122 HQPMGGFQGQATEIDIHAREILKIRERLNQILSEHTGQALEKISQDTERDYFMSGTEAKD 181

Query: 198 WGVVDKVLM 206
           +G++D+V++
Sbjct: 182 YGLIDEVIV 190


>gi|254492068|ref|ZP_05105244.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylophaga
           thiooxidans DMS010]
 gi|224462732|gb|EEF79005.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylophaga
           thiooxydans DMS010]
          Length = 212

 Score =  264 bits (675), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 119/191 (62%), Positives = 153/191 (80%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+VVEQT+RGERSYDIYSRLLKER++F+ G +ED MA LI AQLLFLE+ENP K+I L
Sbjct: 17  LVPIVVEQTSRGERSYDIYSRLLKERVIFLVGPVEDQMANLIVAQLLFLESENPDKDIHL 76

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGMAIYDTMQF+KP +ST C+GQAASMG++LL+ G +G R  LPN+RI++
Sbjct: 77  YINSPGGAVTAGMAIYDTMQFVKPNVSTLCIGQAASMGAVLLAGGAEGKRHCLPNSRIMV 136

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQASD + HA++I+ I+ RLN I   + G+  E + +  DRD+ M+  +A +
Sbjct: 137 HQPLGGFQGQASDFDIHAKEILSIRDRLNGILAHHTGQDIEAIRRDTDRDNFMNGEQALE 196

Query: 198 WGVVDKVLMSR 208
           +G++D VL SR
Sbjct: 197 YGLIDSVLTSR 207


>gi|258514515|ref|YP_003190737.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778220|gb|ACV62114.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 194

 Score =  264 bits (675), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 120/191 (62%), Positives = 158/191 (82%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+VVEQTNRGERSYDIYSRLLK+RI+F+ G IED+ A LI AQLLFLEAE+P+K+I L
Sbjct: 4   LVPIVVEQTNRGERSYDIYSRLLKDRIIFIGGPIEDYTANLIIAQLLFLEAEDPEKDIHL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVTAGMAIYDTMQ+IKPP+ST C+GQAASMGS LL+AG  G RFALP ARI++
Sbjct: 64  YINSPGGVVTAGMAIYDTMQYIKPPVSTICLGQAASMGSFLLAAGAPGKRFALPYARIMI 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQA+DI  HA++I+++K  LN++  K+  +  +++ +  +RD  MSA +A +
Sbjct: 124 HQPSGGMQGQATDIGIHAKEILRMKEILNKLLSKHTKQPLDKITRDSERDFFMSAEDAKE 183

Query: 198 WGVVDKVLMSR 208
           +G++D+++  +
Sbjct: 184 YGIIDQIVTRK 194


>gi|20129427|ref|NP_609388.1| CG5045 [Drosophila melanogaster]
 gi|7297671|gb|AAF52923.1| CG5045 [Drosophila melanogaster]
 gi|21428864|gb|AAM50151.1| GH10833p [Drosophila melanogaster]
 gi|220944040|gb|ACL84563.1| CG5045-PA [synthetic construct]
 gi|220954028|gb|ACL89557.1| CG5045-PA [synthetic construct]
 gi|223966793|emb|CAR93133.1| CG5045-PA [Drosophila melanogaster]
          Length = 253

 Score =  264 bits (674), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 121/200 (60%), Positives = 158/200 (79%)

Query: 6   CAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF 65
           C  + +    + L+PMVVEQT RGER+YDI+SRLLKERI+ + G I D +++ + AQLLF
Sbjct: 17  CGGRANSVRNINLIPMVVEQTGRGERAYDIFSRLLKERIICLMGNITDDISSTVVAQLLF 76

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L++EN  K I LYINSPGGVVTAG+AIYDTMQ++KPPI+T+C+GQA SMGSLLL+AG  G
Sbjct: 77  LQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPIATWCVGQACSMGSLLLAAGAPG 136

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
           MR++LPNARI++HQPSGG  GQA+DI  HA++I+KIKR+L  IYVK+   TYEE+   ++
Sbjct: 137 MRYSLPNARIMIHQPSGGAQGQATDILIHAEEIIKIKRQLTNIYVKHAKNTYEEMSGRME 196

Query: 186 RDHIMSASEACDWGVVDKVL 205
           RDH M+  EA   G++D VL
Sbjct: 197 RDHFMTPEEAKVLGIIDHVL 216


>gi|294670412|ref|ZP_06735294.1| hypothetical protein NEIELOOT_02131 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307876|gb|EFE49119.1| hypothetical protein NEIELOOT_02131 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 211

 Score =  264 bits (674), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 116/195 (59%), Positives = 159/195 (81%), Gaps = 2/195 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P V+EQ+ RGER++DIYSRLLKERI+F+ G + DH A L+ AQ+LFLE+ENP K+I  
Sbjct: 10  LIPTVIEQSGRGERAFDIYSRLLKERIIFLVGPVTDHTANLVVAQMLFLESENPDKDIFF 69

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YI+SPGG VTAGM+++DTM FIKP +ST C+GQAASMG+ LLSAG KG RFALPN+RI++
Sbjct: 70  YIDSPGGSVTAGMSVFDTMNFIKPDVSTLCLGQAASMGAFLLSAGAKGKRFALPNSRIMI 129

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASDIE HA++++K+K++LNE+  K+ G+  E+VE+  DRD+ MS+  A
Sbjct: 130 HQPLISGGLGGQASDIEIHARELIKLKQKLNELLAKHTGQPLEKVERDTDRDNFMSSEAA 189

Query: 196 CDWGVVDKVLMSRID 210
            ++G++D+V+ +R D
Sbjct: 190 KEYGLIDEVIATRAD 204


>gi|195952528|ref|YP_002120818.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Hydrogenobaculum sp. Y04AAS1]
 gi|195932140|gb|ACG56840.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 205

 Score =  264 bits (674), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 122/200 (61%), Positives = 159/200 (79%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           KD + +   LVP+VVEQT RGER+YDIYSRLL++RIV +   I+DH+A LI AQLLFLEA
Sbjct: 5   KDYQKIIDQLVPIVVEQTPRGERAYDIYSRLLQDRIVILGFPIDDHVANLIVAQLLFLEA 64

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ++P+K+I +YINSPGG VTAG+AIYDTMQ+IKP ++T C+GQAASMG++LL+AG KG RF
Sbjct: 65  QDPEKDIQMYINSPGGSVTAGLAIYDTMQYIKPDVTTICIGQAASMGAVLLAAGTKGKRF 124

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           ALPNARI++HQP GG  GQA+DI  HA++I +IK  LN I     GK   ++EK +DRD+
Sbjct: 125 ALPNARIMIHQPLGGVQGQATDILIHAEEIKRIKHILNTILANATGKNLRQIEKDVDRDY 184

Query: 189 IMSASEACDWGVVDKVLMSR 208
            MSA EA ++G++DKV+  R
Sbjct: 185 FMSAEEAKNYGLIDKVITKR 204


>gi|114330232|ref|YP_746454.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nitrosomonas
           eutropha C91]
 gi|122314709|sp|Q0AJI2|CLPP_NITEC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|114307246|gb|ABI58489.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nitrosomonas
           eutropha C91]
          Length = 214

 Score =  264 bits (674), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 119/193 (61%), Positives = 155/193 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LGL+PMV+E + RGER+YDIYSRLL+ERI+F+ G + +  A L+ AQLLFLE+EN +K+I
Sbjct: 17  LGLIPMVIESSGRGERAYDIYSRLLRERIIFLVGPVTETSANLVIAQLLFLESENSEKDI 76

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG+VTAG+A+YDTMQFIKP +ST C+GQAASMG+LLL+AG KG R+ LPN+R+
Sbjct: 77  SLYINSPGGLVTAGLAVYDTMQFIKPDVSTLCIGQAASMGALLLTAGAKGKRYCLPNSRV 136

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQASDIE HA++I+ +K RLNEI  K+  +T   +EK  DRD+ + A  A
Sbjct: 137 MIHQPLGGFQGQASDIEIHAKEILALKGRLNEILAKHTSQTIRTIEKDTDRDNFLGAEAA 196

Query: 196 CDWGVVDKVLMSR 208
             + +VD VL SR
Sbjct: 197 VKYSLVDAVLTSR 209


>gi|291614263|ref|YP_003524420.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sideroxydans
           lithotrophicus ES-1]
 gi|291584375|gb|ADE12033.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sideroxydans
           lithotrophicus ES-1]
          Length = 208

 Score =  264 bits (674), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 117/194 (60%), Positives = 155/194 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +G++PMVVE + RGER+YDIYSRLLKER+VF+ G++ DH A LI AQ+LFLE+ENP K+I
Sbjct: 15  IGMIPMVVESSGRGERAYDIYSRLLKERVVFLVGEVNDHTANLIVAQMLFLESENPDKDI 74

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG ++AGMAIYDTMQFIKP +ST C+G AASMG+ LL AG KG RFALPN+ +
Sbjct: 75  HFYINSPGGSISAGMAIYDTMQFIKPQVSTLCIGMAASMGAFLLQAGAKGKRFALPNSTV 134

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQASDIE HA+ I+ ++ RL  +  ++ G+T EE+ +  +RD+ +SA EA
Sbjct: 135 MIHQPLGGFRGQASDIEIHARYILSLRERLYALMAQHTGRTVEEIARDSERDNFLSAKEA 194

Query: 196 CDWGVVDKVLMSRI 209
            ++G+VD+VL  RI
Sbjct: 195 VEYGLVDQVLDKRI 208


>gi|221068424|ref|ZP_03544529.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Comamonas
           testosteroni KF-1]
 gi|220713447|gb|EED68815.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Comamonas
           testosteroni KF-1]
          Length = 202

 Score =  264 bits (674), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 117/193 (60%), Positives = 155/193 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG+VPMV+EQ+ RGERSYDIYSRLLKER++F+ G++ D  A L+ AQLLFLE+ENP K+I
Sbjct: 9   LGMVPMVIEQSGRGERSYDIYSRLLKERVIFLVGEVNDQTANLVVAQLLFLESENPDKDI 68

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S YINSPGG VTAGMAI+DTM FIKP +ST C G AASMG+ LLSAG KG R+ALPNA++
Sbjct: 69  SFYINSPGGSVTAGMAIFDTMNFIKPDVSTLCTGMAASMGAFLLSAGAKGKRYALPNAQV 128

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE HA++I+K + RLN+I  +  G+  E+++   +RD+ +SA EA
Sbjct: 129 MIHQPLGGARGQATEIEIHAREILKTRERLNKILAERTGQPLEKIQNDTERDYFLSADEA 188

Query: 196 CDWGVVDKVLMSR 208
            D+G+VD+V+  R
Sbjct: 189 KDYGLVDQVISKR 201


>gi|38344435|emb|CAE05641.2| OSJNBa0038O10.7 [Oryza sativa Japonica Group]
 gi|116310954|emb|CAH67891.1| OSIGBa0153E02-OSIGBa0093I20.20 [Oryza sativa Indica Group]
 gi|125549084|gb|EAY94906.1| hypothetical protein OsI_16707 [Oryza sativa Indica Group]
          Length = 259

 Score =  264 bits (674), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 119/192 (61%), Positives = 156/192 (81%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+E T+RGER+YDI+SRLLKERIV + G I D  A+L+ AQLLFLE+ENP K + 
Sbjct: 35  GLVPMVIEHTSRGERAYDIFSRLLKERIVCIHGPITDDTASLVVAQLLFLESENPAKPVH 94

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGVVTAG+AIYDTMQ+I+ P++T C+GQAASM SLLL+AG +G R ALPNAR++
Sbjct: 95  LYINSPGGVVTAGLAIYDTMQYIRSPVTTLCIGQAASMASLLLAAGARGERRALPNARVM 154

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG SGQASDI  HA++I+K++ RLN+IY K+  +  + +E+ ++RD  M   EA 
Sbjct: 155 IHQPSGGASGQASDIAIHAKEILKVRDRLNKIYAKHTSQAIDRIEQCMERDMFMDPEEAH 214

Query: 197 DWGVVDKVLMSR 208
           DWG++D+V+  R
Sbjct: 215 DWGLIDEVIEHR 226


>gi|78357263|ref|YP_388712.1| ATP-dependent Clp protease proteolytic subunit [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|90101407|sp|Q30Z79|CLPP_DESDG RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|78219668|gb|ABB39017.1| ATP-dependent Clp protease proteolytic subunit ClpP [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 200

 Score =  264 bits (674), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 116/198 (58%), Positives = 161/198 (81%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +PMV+E T R ER+YDIYSRLLK+RI+ +   ++D++A+LICAQLLFLE+ENP+KEI LY
Sbjct: 3   IPMVIESTGRAERAYDIYSRLLKDRIILLGTPVDDNVASLICAQLLFLESENPEKEIYLY 62

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGVVTAG+AIYDTMQ+I  P++T CMGQAASMG+ LL+AG+ GMRFALPN+RI++H
Sbjct: 63  INSPGGVVTAGLAIYDTMQYISAPVATLCMGQAASMGAFLLAAGQPGMRFALPNSRIMIH 122

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA+DI+  A++I+++K RLNEI  ++ G+  E++ +  DRD+ M    A ++
Sbjct: 123 QPMGGAQGQATDIDIQAREILRLKDRLNEILSRHTGQPLEKIVEHTDRDYFMGPENAKNF 182

Query: 199 GVVDKVLMSRIDIEEKSK 216
           G++D++L SR D+E+  K
Sbjct: 183 GIIDRILTSRKDVEKDGK 200


>gi|94310823|ref|YP_584033.1| ATP-dependent Clp protease proteolytic subunit [Cupriavidus
           metallidurans CH34]
 gi|116243154|sp|Q1LM62|CLPP_RALME RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|93354675|gb|ABF08764.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Cupriavidus metallidurans CH34]
          Length = 216

 Score =  264 bits (674), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 119/193 (61%), Positives = 153/193 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LGLVPMVVEQ+ RGER+YDIYSRLLKER+VF+ G++ D  A L+ AQLLFLE+ENP K++
Sbjct: 23  LGLVPMVVEQSGRGERAYDIYSRLLKERVVFMVGEVNDQTANLVVAQLLFLESENPDKDV 82

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG V+AG+AIYDTMQFIKP + T CMG AASMG+ LL+AG KG R ALPN+RI
Sbjct: 83  SLYINSPGGSVSAGLAIYDTMQFIKPDVQTLCMGMAASMGAFLLAAGAKGKRSALPNSRI 142

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDIE  A++I+ ++ RLN I  +  G+  E++ +  DRD+ MS  +A
Sbjct: 143 MIHQPLGGARGQASDIEIQAREILYLRERLNSILSEVTGQPVEKIARDTDRDNFMSGDQA 202

Query: 196 CDWGVVDKVLMSR 208
            D+G++DKV+  R
Sbjct: 203 VDYGLIDKVITRR 215


>gi|112823618|gb|ABI25707.1| ATP-dependent Clp protease proteolytic subunit ClpP [Haemophilus
           somnus 129PT]
          Length = 188

 Score =  264 bits (674), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 122/188 (64%), Positives = 156/188 (82%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MVVEQT+RGERSYDIYSRLLKER++F+TG++ED MA LI AQLLFLEAE+P K+I++YIN
Sbjct: 1   MVVEQTSRGERSYDIYSRLLKERVIFLTGEVEDRMANLIVAQLLFLEAEDPAKDINIYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGG VTAGMAIYDTMQFIKP + T C+GQA SMG+ LL+ G  G R ALP+AR+++HQP
Sbjct: 61  SPGGSVTAGMAIYDTMQFIKPDVRTLCIGQACSMGAFLLAGGTAGKRAALPHARVMIHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            GGF GQASDI+ HAQ+I+KIK+ LNE    + G++ E++E+  DRD+ MSA +A  +G+
Sbjct: 121 LGGFRGQASDIQIHAQEILKIKQTLNERLAFHTGQSIEQIEQDTDRDNFMSAEQAKLYGL 180

Query: 201 VDKVLMSR 208
           VD+VL+ R
Sbjct: 181 VDEVLIKR 188


>gi|226533042|ref|NP_001147355.1| ATP-dependent Clp protease proteolytic subunit [Zea mays]
 gi|194700894|gb|ACF84531.1| unknown [Zea mays]
 gi|195610476|gb|ACG27068.1| ATP-dependent Clp protease proteolytic subunit [Zea mays]
          Length = 260

 Score =  264 bits (674), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 119/192 (61%), Positives = 156/192 (81%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+E T+RGER+YDI+SRLLKERIV + G I D  A+L+ AQLLFLE+ENP K + 
Sbjct: 36  GLVPMVIEHTSRGERAYDIFSRLLKERIVCIHGPITDDTASLVVAQLLFLESENPAKPVH 95

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGVVTAG+AIYDTMQ+I+ P++T C+GQAASM SLLL+AG  G R ALPNAR++
Sbjct: 96  LYINSPGGVVTAGLAIYDTMQYIRSPVTTLCIGQAASMASLLLAAGASGERRALPNARVM 155

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG SGQASDI  HA++I+K++ RLN+IY K+ G+  + +E+ ++RD  M   EA 
Sbjct: 156 IHQPSGGASGQASDIAIHAKEILKVRDRLNKIYAKHTGQAIDRIEQCMERDMFMDPEEAH 215

Query: 197 DWGVVDKVLMSR 208
           +WG++D+V+  R
Sbjct: 216 EWGLIDEVIEHR 227


>gi|73541074|ref|YP_295594.1| ATP-dependent Clp protease proteolytic subunit [Ralstonia eutropha
           JMP134]
 gi|124013825|sp|Q472D3|CLPP_RALEJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|72118487|gb|AAZ60750.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ralstonia
           eutropha JMP134]
          Length = 216

 Score =  264 bits (674), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 119/193 (61%), Positives = 153/193 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LGLVPMVVEQ+ RGER+YDIYSRLLKER+VF+ G++ D  A L+ AQLLFLE+ENP K+I
Sbjct: 23  LGLVPMVVEQSGRGERAYDIYSRLLKERVVFLVGEVNDQTANLVVAQLLFLESENPDKDI 82

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG V+AG+AIYDTMQF+KP + T CMG AASMG+ LL+AG KG R ALPN+RI
Sbjct: 83  SLYINSPGGSVSAGLAIYDTMQFVKPDVQTLCMGMAASMGAFLLAAGAKGKRSALPNSRI 142

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDIE  A++I+ ++ RLN I  +  G+  E++ +  DRD+ MS  +A
Sbjct: 143 MIHQPLGGARGQASDIEIQAREILYLRERLNSILSEVTGQPVEKIARDTDRDNFMSGDQA 202

Query: 196 CDWGVVDKVLMSR 208
            D+G++DKV+  R
Sbjct: 203 VDYGLIDKVIARR 215


>gi|194761774|ref|XP_001963100.1| GF15771 [Drosophila ananassae]
 gi|190616797|gb|EDV32321.1| GF15771 [Drosophila ananassae]
          Length = 252

 Score =  263 bits (673), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 121/200 (60%), Positives = 159/200 (79%)

Query: 6   CAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF 65
           CA + S    + L+PMVVEQT RGER+YDI+SRLLKERI+ + G I D +++ + AQLLF
Sbjct: 17  CAGRTSLVRNINLIPMVVEQTGRGERAYDIFSRLLKERIICLMGNITDDISSTVVAQLLF 76

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L++EN  K I LYINSPGGVVTAG+AIYDTMQ++KPPI+T+C+GQA SMGSLLL+AG  G
Sbjct: 77  LQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPIATWCVGQACSMGSLLLAAGAPG 136

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
           MR++LPNARI++HQPSGG  GQA+DI  HA++I+KIKR+L  IYVK+   +Y+E+   ++
Sbjct: 137 MRYSLPNARIMIHQPSGGAQGQATDILIHAEEIIKIKRQLTSIYVKHAKNSYDEMCSRME 196

Query: 186 RDHIMSASEACDWGVVDKVL 205
           RDH M+  EA   G++D VL
Sbjct: 197 RDHFMTPEEAKTLGIIDHVL 216


>gi|302817596|ref|XP_002990473.1| hypothetical protein SELMODRAFT_131898 [Selaginella moellendorffii]
 gi|300141641|gb|EFJ08350.1| hypothetical protein SELMODRAFT_131898 [Selaginella moellendorffii]
          Length = 253

 Score =  263 bits (673), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 118/194 (60%), Positives = 160/194 (82%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
             GL+PMV+E T RGER+YDI+SRLLKERIV + G I D  A+L+ AQLL+LE+ENP K 
Sbjct: 26  LYGLIPMVIEHTARGERAYDIFSRLLKERIVCIHGPIADDTASLVVAQLLYLESENPLKP 85

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I LYINSPGGVVTAG+AIYDTMQ+I+ P+ST C+GQAASMGSLLL+AGE G R +LPNAR
Sbjct: 86  IHLYINSPGGVVTAGLAIYDTMQYIRSPVSTLCVGQAASMGSLLLAAGEPGQRRSLPNAR 145

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           +++HQPSGG SGQASDI   A++I+ ++ RLN++Y K+ G + E+++++++RDH MS  E
Sbjct: 146 VMVHQPSGGASGQASDIAIQAREILDMRSRLNKLYAKHTGSSIEKIDQSMERDHFMSPEE 205

Query: 195 ACDWGVVDKVLMSR 208
           A ++G++D+V++ R
Sbjct: 206 AKEFGLIDEVIVQR 219


>gi|219872047|ref|YP_002476422.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           parasuis SH0165]
 gi|254763791|sp|B8F822|CLPP_HAEPS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|219692251|gb|ACL33474.1| ATP-dependent Clp protease proteolytic subunit ClpP [Haemophilus
           parasuis SH0165]
          Length = 193

 Score =  263 bits (673), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 118/193 (61%), Positives = 157/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++PMVVEQ+++GER+YDIYSRLLKERI+F+ G +ED MA LI AQ+LFLEAE+P+K+I
Sbjct: 1   MAVIPMVVEQSSKGERAYDIYSRLLKERIIFLNGGVEDEMAKLIIAQMLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVTAG+AIYDTM FIKP +ST CMGQA SMG+ LLSAG KG RFALPN+R+
Sbjct: 61  YLYINSPGGVVTAGLAIYDTMNFIKPDVSTLCMGQACSMGAFLLSAGAKGKRFALPNSRV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG+ GQA+DI+ HAQ+I+K+K  L     ++C + +E+V +  +RD+ MSA EA
Sbjct: 121 MIHQPLGGYRGQATDIQIHAQEILKLKEMLTRKMAEHCSQPFEKVAQDTERDNFMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D V+  R
Sbjct: 181 KAYGLIDDVVTKR 193


>gi|319794078|ref|YP_004155718.1| ATP-dependent clp protease, proteolytic subunit clpp [Variovorax
           paradoxus EPS]
 gi|315596541|gb|ADU37607.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Variovorax
           paradoxus EPS]
          Length = 202

 Score =  263 bits (673), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 119/193 (61%), Positives = 157/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG+VPMVVEQ+ RGERSYDIYSRLLKERIVF+ G++ D  A L+ AQLLFLE+ENP+K+I
Sbjct: 9   LGMVPMVVEQSGRGERSYDIYSRLLKERIVFLVGEVNDQTANLVVAQLLFLESENPEKDI 68

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S YINSPGG V+AGMAIYDTMQFIKP +ST C+G AASMG+ LL+AGEKG RF+LPN+++
Sbjct: 69  SFYINSPGGSVSAGMAIYDTMQFIKPDVSTMCLGFAASMGAFLLAAGEKGKRFSLPNSKV 128

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQ  GG  GQA+DIE HA+DI++ K ++N I  +  G+  E+V+   +RD+ ++A EA
Sbjct: 129 MIHQVLGGARGQATDIEIHARDILRTKDQMNRILAERTGQPLEKVKTDTERDYFLTADEA 188

Query: 196 CDWGVVDKVLMSR 208
            D+G+VD+V+  R
Sbjct: 189 KDYGLVDQVVAKR 201


>gi|134295958|ref|YP_001119693.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           vietnamiensis G4]
 gi|166201808|sp|A4JF05|CLPP_BURVG RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|134139115|gb|ABO54858.1| ATP-dependent Clp protease proteolytic subunit ClpP [Burkholderia
           vietnamiensis G4]
          Length = 217

 Score =  263 bits (673), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 119/193 (61%), Positives = 155/193 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LGLVP+VVE + RGERSYDIYSRLLKER+VF+ G++ D  A L+ AQLLFLE+ENP K+I
Sbjct: 24  LGLVPIVVETSGRGERSYDIYSRLLKERLVFMVGEVNDQTANLVVAQLLFLESENPDKDI 83

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG V+AGMAIYDTMQFIKP +ST CMG AASMG+ LL++G KG RFALPN+R+
Sbjct: 84  SLYINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRV 143

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDIE  A++I+ +K RLN +  ++ G+  E + +  DRD+ MS+ +A
Sbjct: 144 MIHQPLGGARGQASDIEIQAREILYLKERLNNLLAQHTGQDVERIARDTDRDNFMSSDDA 203

Query: 196 CDWGVVDKVLMSR 208
             +G++D+VL+ R
Sbjct: 204 KAYGLIDQVLLKR 216


>gi|195434156|ref|XP_002065069.1| GK15263 [Drosophila willistoni]
 gi|194161154|gb|EDW76055.1| GK15263 [Drosophila willistoni]
          Length = 255

 Score =  263 bits (673), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 120/200 (60%), Positives = 160/200 (80%)

Query: 6   CAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF 65
           CA + +    + L+PMVVEQT RGER+YDI+SRLLKERI+ + G I D +++ + AQLLF
Sbjct: 17  CASRANSVRGINLIPMVVEQTGRGERAYDIFSRLLKERIICLMGNITDDISSTVVAQLLF 76

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L++EN  K I LYINSPGGVVTAG+AIYDTMQ++KPPI+T+C+GQA SMGSLLL+AG  G
Sbjct: 77  LQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPIATWCVGQACSMGSLLLAAGAPG 136

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
           MR++LPNARI++HQPSGG  GQA+DI  HA++I+KIKR+L  IYVK+   +Y+E+ + ++
Sbjct: 137 MRYSLPNARIMIHQPSGGAQGQATDILIHAEEIIKIKRQLTAIYVKHAKNSYDEMCQRME 196

Query: 186 RDHIMSASEACDWGVVDKVL 205
           RDH M+  EA   G++D VL
Sbjct: 197 RDHFMTPEEAKTLGIIDHVL 216


>gi|320354136|ref|YP_004195475.1| ATP-dependent Clp protease proteolytic subunit ClpP [Desulfobulbus
           propionicus DSM 2032]
 gi|320122638|gb|ADW18184.1| ATP-dependent Clp protease proteolytic subunit ClpP [Desulfobulbus
           propionicus DSM 2032]
          Length = 200

 Score =  263 bits (673), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 115/193 (59%), Positives = 162/193 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQ+ RGER++DIYSRLLKERI+F+  Q+ D +A+L+ AQLLFLEAE+P K+I
Sbjct: 1   MNLVPMVVEQSPRGERAFDIYSRLLKERIIFLGTQVNDDVASLVVAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           + YINSPGG VTAGMAIYDTMQ+I+  ++T CMGQAASMG+LLL++G  G RFALPN+RI
Sbjct: 61  TFYINSPGGSVTAGMAIYDTMQYIRCDVATLCMGQAASMGALLLASGAAGKRFALPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG+ GQA+DI+ HA++I++++  LN I  ++ GK+ ++++   +RD+ MSA+EA
Sbjct: 121 MIHQPMGGYQGQATDIDIHAREILRMRHDLNTILARHTGKSMKKIQADTERDNFMSATEA 180

Query: 196 CDWGVVDKVLMSR 208
           C++G++DKVL +R
Sbjct: 181 CEYGIIDKVLTNR 193


>gi|255019392|ref|ZP_05291501.1| ATP-dependent Clp protease proteolytic subunit [Acidithiobacillus
           caldus ATCC 51756]
 gi|254971164|gb|EET28617.1| ATP-dependent Clp protease proteolytic subunit [Acidithiobacillus
           caldus ATCC 51756]
          Length = 214

 Score =  263 bits (673), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 128/198 (64%), Positives = 165/198 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG VPMV+EQT RGER++DIYSRLLKER++F+ G +ED MA L+ AQLLFLEAENP K+I
Sbjct: 16  LGYVPMVIEQTGRGERAFDIYSRLLKERVIFLVGPVEDLMANLVVAQLLFLEAENPDKDI 75

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGG VTAG+AIYDTMQFI+P +ST C+GQAASMG++LL+AG  G R+ALPNARI
Sbjct: 76  ALYINSPGGSVTAGLAIYDTMQFIRPAVSTVCIGQAASMGAVLLAAGAAGKRYALPNARI 135

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +LHQPSGG+ G A DIE HA++I++I++RLNEI V++ G++ + +E+ LDRD  MSA EA
Sbjct: 136 MLHQPSGGYQGVAHDIEIHAKEILRIRQRLNEILVEHTGQSQQRIEQDLDRDFFMSAQEA 195

Query: 196 CDWGVVDKVLMSRIDIEE 213
            D+ +VD V+  R D E+
Sbjct: 196 KDYHLVDSVITHRGDNED 213


>gi|107028898|ref|YP_625993.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           cenocepacia AU 1054]
 gi|115351962|ref|YP_773801.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           ambifaria AMMD]
 gi|116689944|ref|YP_835567.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           cenocepacia HI2424]
 gi|170702050|ref|ZP_02892966.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           ambifaria IOP40-10]
 gi|170733282|ref|YP_001765229.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           cenocepacia MC0-3]
 gi|171320790|ref|ZP_02909797.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           ambifaria MEX-5]
 gi|172060888|ref|YP_001808540.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           ambifaria MC40-6]
 gi|206560359|ref|YP_002231123.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           cenocepacia J2315]
 gi|116243129|sp|Q1BH85|CLPP_BURCA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|122322952|sp|Q0BEF6|CLPP_BURCM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166201802|sp|A0K847|CLPP_BURCH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|105898062|gb|ABF81020.1| ATP-dependent Clp protease proteolytic subunit ClpP [Burkholderia
           cenocepacia AU 1054]
 gi|115281950|gb|ABI87467.1| ATP-dependent Clp protease proteolytic subunit ClpP [Burkholderia
           ambifaria AMMD]
 gi|116648033|gb|ABK08674.1| ATP-dependent Clp protease proteolytic subunit ClpP [Burkholderia
           cenocepacia HI2424]
 gi|169816524|gb|ACA91107.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           cenocepacia MC0-3]
 gi|170133036|gb|EDT01448.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           ambifaria IOP40-10]
 gi|171093960|gb|EDT39074.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           ambifaria MEX-5]
 gi|171993405|gb|ACB64324.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           ambifaria MC40-6]
 gi|198036400|emb|CAR52296.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           cenocepacia J2315]
          Length = 217

 Score =  263 bits (672), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 119/193 (61%), Positives = 155/193 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LGLVP+VVE + RGERSYDIYSRLLKER+VF+ G++ D  A L+ AQLLFLE+ENP K+I
Sbjct: 24  LGLVPIVVETSGRGERSYDIYSRLLKERLVFMVGEVNDQTANLVVAQLLFLESENPDKDI 83

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG V+AGMAIYDTMQFIKP +ST CMG AASMG+ LL++G KG RFALPN+R+
Sbjct: 84  SLYINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRV 143

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDIE  A++I+ +K RLN +  ++ G+  E + +  DRD+ MS+ +A
Sbjct: 144 MIHQPLGGARGQASDIEIQAREILYLKERLNNLLAQHTGQDVERIARDTDRDNFMSSEDA 203

Query: 196 CDWGVVDKVLMSR 208
             +G++D+VL+ R
Sbjct: 204 KAYGLIDQVLLKR 216


>gi|28870881|ref|NP_793500.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|213968834|ref|ZP_03396975.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
           syringae pv. tomato T1]
 gi|28854130|gb|AAO57195.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|213926437|gb|EEB59991.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
           syringae pv. tomato T1]
          Length = 216

 Score =  263 bits (672), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 117/192 (60%), Positives = 154/192 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+EQ+ RGER+YDIYSRLLKER++F+ G +ED+MA LI AQLLFLEAENP K+I 
Sbjct: 21  GLVPMVIEQSARGERAYDIYSRLLKERVIFMVGPVEDYMANLIAAQLLFLEAENPDKDIH 80

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+ LL+ G +G R  LPN+R++
Sbjct: 81  LYINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAGGAEGKRHCLPNSRMM 140

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDI+ HA++I+ I+ RLN +   + G++ E +E+  +RD+ MSA  A 
Sbjct: 141 IHQPLGGFQGQASDIDIHAKEILHIRHRLNSLLAHHTGQSLETIERDTERDNFMSAERAA 200

Query: 197 DWGVVDKVLMSR 208
           ++G++D V+  R
Sbjct: 201 EYGLIDSVINKR 212


>gi|302804055|ref|XP_002983780.1| hypothetical protein SELMODRAFT_48156 [Selaginella moellendorffii]
 gi|300148617|gb|EFJ15276.1| hypothetical protein SELMODRAFT_48156 [Selaginella moellendorffii]
          Length = 206

 Score =  263 bits (672), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 118/194 (60%), Positives = 160/194 (82%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
             GL+PMV+E T RGER+YDI+SRLLKERIV + G I D  A+L+ AQLL+LE+ENP K 
Sbjct: 3   LYGLIPMVIEHTARGERAYDIFSRLLKERIVCIHGPIADDTASLVVAQLLYLESENPLKP 62

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I LYINSPGGVVTAG+AIYDTMQ+I+ P+ST C+GQAASMGSLLL+AGE G R +LPNAR
Sbjct: 63  IHLYINSPGGVVTAGLAIYDTMQYIRSPVSTLCVGQAASMGSLLLAAGEPGQRRSLPNAR 122

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           +++HQPSGG SGQASDI   A++I+ ++ RLN++Y K+ G + E+++++++RDH MS  E
Sbjct: 123 VMVHQPSGGASGQASDIAIQAREILDMRSRLNKLYAKHTGSSIEKIDQSMERDHFMSPEE 182

Query: 195 ACDWGVVDKVLMSR 208
           A ++G++D+V++ R
Sbjct: 183 AKEFGLIDEVIVQR 196


>gi|261401252|ref|ZP_05987377.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
           lactamica ATCC 23970]
 gi|269208735|gb|EEZ75190.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
           lactamica ATCC 23970]
          Length = 206

 Score =  263 bits (672), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 121/196 (61%), Positives = 157/196 (80%), Gaps = 2/196 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ+ RGER++DIYSRLLKERIVF+ G + D  A L+ AQLLFLE+ENP K+I  
Sbjct: 9   LVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFF 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM+IYDTM FIKP +ST C+GQAASMG+ LLSAG KG RFALPN+RI++
Sbjct: 69  YINSPGGSVTAGMSIYDTMNFIKPDVSTLCLGQAASMGAFLLSAGGKGKRFALPNSRIMI 128

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASDIE HA++++KIK +LN +  K+C +   ++E+  DRD+ MSA EA
Sbjct: 129 HQPLISGGLGGQASDIEIHARELLKIKEKLNRLMAKHCDRDLADLERDTDRDNFMSAEEA 188

Query: 196 CDWGVVDKVLMSRIDI 211
            ++G++D+VL +R+ +
Sbjct: 189 KEYGLIDQVLENRVSL 204


>gi|313668450|ref|YP_004048734.1| endopeptidase [Neisseria lactamica ST-640]
 gi|309379242|emb|CBX22199.1| unnamed protein product [Neisseria lactamica Y92-1009]
 gi|313005912|emb|CBN87368.1| endopeptidase [Neisseria lactamica 020-06]
          Length = 206

 Score =  263 bits (672), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 121/197 (61%), Positives = 157/197 (79%), Gaps = 2/197 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ+ RGER++DIYSRLLKERIVF+ G + D  A L+ AQLLFLE+ENP K+I  
Sbjct: 9   LVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFF 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM+IYDTM FIKP +ST C+GQAASMG+ LLSAG KG RFALPN+RI++
Sbjct: 69  YINSPGGSVTAGMSIYDTMNFIKPDVSTLCLGQAASMGAFLLSAGGKGKRFALPNSRIMI 128

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASDIE HA++++KIK +LN +  K+C +   ++E+  DRD+ MSA EA
Sbjct: 129 HQPLISGGLGGQASDIEIHARELLKIKEKLNRLMAKHCNRDLADLERDTDRDNFMSAEEA 188

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G++D+VL +R  ++
Sbjct: 189 KEYGLIDQVLENRASLQ 205


>gi|195146760|ref|XP_002014352.1| GL19149 [Drosophila persimilis]
 gi|194106305|gb|EDW28348.1| GL19149 [Drosophila persimilis]
          Length = 253

 Score =  263 bits (672), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 120/200 (60%), Positives = 158/200 (79%)

Query: 6   CAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF 65
           C    +    + L+PMVVEQT RGER+YDI+SRLLKERI+ + G I D +++ + AQLLF
Sbjct: 17  CVTGTTSSRSINLIPMVVEQTGRGERAYDIFSRLLKERIICLMGNITDDISSTVVAQLLF 76

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L++EN  K I LYINSPGGVVTAG+AIYDTMQ++KPPI+T+C+GQA SMGSLLL+AG  G
Sbjct: 77  LQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPIATWCVGQACSMGSLLLAAGAPG 136

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
           MR++LPNARI++HQPSGG  GQA+DI  HA++I+KIKR+L  IYVK+   +YEE+ + ++
Sbjct: 137 MRYSLPNARIMIHQPSGGAQGQATDILIHAEEIIKIKRQLTSIYVKHAKNSYEEMCQRME 196

Query: 186 RDHIMSASEACDWGVVDKVL 205
           RDH M+  EA   G++D VL
Sbjct: 197 RDHFMTPDEAKILGIIDHVL 216


>gi|66044992|ref|YP_234833.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. syringae B728a]
 gi|71733685|ref|YP_273935.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|237803596|ref|ZP_04591181.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|257483815|ref|ZP_05637856.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|289627504|ref|ZP_06460458.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289649945|ref|ZP_06481288.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|289679415|ref|ZP_06500305.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. syringae FF5]
 gi|298486263|ref|ZP_07004326.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|301384120|ref|ZP_07232538.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. tomato Max13]
 gi|302059517|ref|ZP_07251058.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. tomato K40]
 gi|302135032|ref|ZP_07261022.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|302187983|ref|ZP_07264656.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. syringae 642]
 gi|38257468|sp|Q87YR6|CLPP_PSESM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|81308384|sp|Q4ZVM7|CLPP_PSEU2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|110816461|sp|Q48KZ0|CLPP_PSE14 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|63255699|gb|AAY36795.1| Peptidase S14, ClpP [Pseudomonas syringae pv. syringae B728a]
 gi|71554238|gb|AAZ33449.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|298159270|gb|EFI00328.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|320325361|gb|EFW81428.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320327654|gb|EFW83662.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330868375|gb|EGH03084.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. aesculi str. 0893_23]
 gi|330878772|gb|EGH12921.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
 gi|330882125|gb|EGH16274.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330889997|gb|EGH22658.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. mori str. 301020]
 gi|330897794|gb|EGH29213.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. japonica str. M301072PT]
 gi|330939706|gb|EGH43001.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. pisi str. 1704B]
 gi|330952797|gb|EGH53057.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae Cit 7]
 gi|330959387|gb|EGH59647.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. maculicola str. ES4326]
 gi|330963320|gb|EGH63580.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. actinidiae str. M302091]
 gi|330972589|gb|EGH72655.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. aceris str. M302273PT]
 gi|330985639|gb|EGH83742.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. lachrymans str. M301315]
 gi|331012679|gb|EGH92735.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|331019229|gb|EGH99285.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
 gi|331025578|gb|EGI05634.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 213

 Score =  263 bits (672), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 117/192 (60%), Positives = 154/192 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+EQ+ RGER+YDIYSRLLKER++F+ G +ED+MA LI AQLLFLEAENP K+I 
Sbjct: 18  GLVPMVIEQSARGERAYDIYSRLLKERVIFMVGPVEDYMANLIAAQLLFLEAENPDKDIH 77

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+ LL+ G +G R  LPN+R++
Sbjct: 78  LYINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAGGAEGKRHCLPNSRMM 137

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDI+ HA++I+ I+ RLN +   + G++ E +E+  +RD+ MSA  A 
Sbjct: 138 IHQPLGGFQGQASDIDIHAKEILHIRHRLNSLLAHHTGQSLETIERDTERDNFMSAERAA 197

Query: 197 DWGVVDKVLMSR 208
           ++G++D V+  R
Sbjct: 198 EYGLIDSVINKR 209


>gi|317050717|ref|YP_004111833.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Desulfurispirillum indicum S5]
 gi|316945801|gb|ADU65277.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Desulfurispirillum indicum S5]
          Length = 196

 Score =  263 bits (672), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 120/191 (62%), Positives = 160/191 (83%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+VVEQT RGERSYDIYSRLLK+RIVF+  QI+D ++ +I AQLLFLEAE+P+K+I L
Sbjct: 3   LVPIVVEQTARGERSYDIYSRLLKDRIVFLGTQIDDQISNVIIAQLLFLEAEDPEKDIFL 62

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVTAGMAIYDTMQ+I+P +ST C+GQAASMG++LL+AGEKG RFALP++RI++
Sbjct: 63  YINSPGGVVTAGMAIYDTMQYIRPKVSTICVGQAASMGAVLLAAGEKGKRFALPHSRIMI 122

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I++IK  LN+I V++ G   E++++  DRD  M+  +A  
Sbjct: 123 HQPLGGAQGQATDIEIQAREILRIKEMLNDILVRHTGADLEKIQRDTDRDFFMTGEQARA 182

Query: 198 WGVVDKVLMSR 208
           +G++D+V+ SR
Sbjct: 183 YGIIDEVIQSR 193


>gi|194859835|ref|XP_001969460.1| GG10114 [Drosophila erecta]
 gi|190661327|gb|EDV58519.1| GG10114 [Drosophila erecta]
          Length = 253

 Score =  263 bits (672), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 121/200 (60%), Positives = 158/200 (79%)

Query: 6   CAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF 65
           C  + +    + L+PMVVEQT RGER+YDI+SRLLKERI+ + G I D +++ + AQLLF
Sbjct: 17  CVSRANSVRNINLIPMVVEQTGRGERAYDIFSRLLKERIICLMGNITDDISSTVVAQLLF 76

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L++EN  K I LYINSPGGVVTAG+AIYDTMQ++KPPI+T+C+GQA SMGSLLL+AG  G
Sbjct: 77  LQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPIATWCVGQACSMGSLLLAAGAPG 136

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
           MR++LPNARI++HQPSGG  GQA+DI  HA++I+KIKR+L  IYVK+   TYEE+   ++
Sbjct: 137 MRYSLPNARIMIHQPSGGAQGQATDILIHAEEIIKIKRQLTNIYVKHAKNTYEEMCGRME 196

Query: 186 RDHIMSASEACDWGVVDKVL 205
           RDH M+  EA   G++D VL
Sbjct: 197 RDHFMTPEEAKVLGIIDHVL 216


>gi|60389557|sp|Q6AK59|CLPP_DESPS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
          Length = 203

 Score =  263 bits (672), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 120/197 (60%), Positives = 160/197 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+PMVVEQT RGERSYDIYSRLLKERI+F+   + D +A +I AQLLFLEAE+P+K+I
Sbjct: 1   MNLIPMVVEQTPRGERSYDIYSRLLKERIIFLGSGVNDDVANVIVAQLLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           + YINSPGG VTAGMAIYDTMQ+IK  I+T CMGQAASMG++LL+AG  G R+ALPN+RI
Sbjct: 61  TFYINSPGGSVTAGMAIYDTMQYIKCDIATLCMGQAASMGAVLLAAGTAGKRYALPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DIE H ++I++I++ LN I   + GKT +++E   +RD+ MS+ EA
Sbjct: 121 MIHQPLGGFQGQATDIEIHTKEILRIRKDLNNILAHHTGKTLKKIESDTERDNFMSSVEA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
             +G++D+VL+ R D+E
Sbjct: 181 QKYGLIDEVLVKREDVE 197


>gi|221215056|ref|ZP_03588023.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           multivorans CGD1]
 gi|221164992|gb|EED97471.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           multivorans CGD1]
          Length = 208

 Score =  263 bits (672), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 119/193 (61%), Positives = 155/193 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LGLVP+VVE + RGERSYDIYSRLLKER+VF+ G++ D  A L+ AQLLFLE+ENP K+I
Sbjct: 15  LGLVPIVVETSGRGERSYDIYSRLLKERLVFMVGEVNDQTANLVVAQLLFLESENPDKDI 74

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG V+AGMAIYDTMQFIKP +ST CMG AASMG+ LL++G KG RFALPN+R+
Sbjct: 75  SLYINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRV 134

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDIE  A++I+ +K RLN +  ++ G+  E + +  DRD+ MS+ +A
Sbjct: 135 MIHQPLGGARGQASDIEIQAREILYLKERLNHLLAQHTGQDVERIARDTDRDNFMSSEDA 194

Query: 196 CDWGVVDKVLMSR 208
             +G++D+VL+ R
Sbjct: 195 KAYGLIDQVLLKR 207


>gi|198461900|ref|XP_001352265.2| GA18618 [Drosophila pseudoobscura pseudoobscura]
 gi|198142480|gb|EAL29303.2| GA18618 [Drosophila pseudoobscura pseudoobscura]
          Length = 253

 Score =  263 bits (672), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 120/200 (60%), Positives = 158/200 (79%)

Query: 6   CAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF 65
           C    +    + L+PMVVEQT RGER+YDI+SRLLKERI+ + G I D +++ + AQLLF
Sbjct: 17  CVTGTTSSRSINLIPMVVEQTGRGERAYDIFSRLLKERIICLMGNITDDISSTVVAQLLF 76

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L++EN  K I LYINSPGGVVTAG+AIYDTMQ++KPPI+T+C+GQA SMGSLLL+AG  G
Sbjct: 77  LQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPIATWCVGQACSMGSLLLAAGAPG 136

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
           MR++LPNARI++HQPSGG  GQA+DI  HA++I+KIKR+L  IYVK+   +YEE+ + ++
Sbjct: 137 MRYSLPNARIMIHQPSGGAQGQATDILIHAEEIIKIKRQLTSIYVKHAKNSYEEMCQRME 196

Query: 186 RDHIMSASEACDWGVVDKVL 205
           RDH M+  EA   G++D VL
Sbjct: 197 RDHFMTPDEAKVLGIIDHVL 216


>gi|161524522|ref|YP_001579534.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           multivorans ATCC 17616]
 gi|189350722|ref|YP_001946350.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           multivorans ATCC 17616]
 gi|221198217|ref|ZP_03571263.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           multivorans CGD2M]
 gi|221209201|ref|ZP_03582193.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           multivorans CGD2]
 gi|254252156|ref|ZP_04945474.1| Peptidase S14 [Burkholderia dolosa AUO158]
 gi|124894765|gb|EAY68645.1| Peptidase S14 [Burkholderia dolosa AUO158]
 gi|160341951|gb|ABX15037.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           multivorans ATCC 17616]
 gi|189334744|dbj|BAG43814.1| ATP-dependent Clp protease [Burkholderia multivorans ATCC 17616]
 gi|221170939|gb|EEE03394.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           multivorans CGD2]
 gi|221182149|gb|EEE14550.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           multivorans CGD2M]
 gi|325518991|gb|EGC98514.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia sp.
           TJI49]
          Length = 217

 Score =  263 bits (672), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 119/193 (61%), Positives = 155/193 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LGLVP+VVE + RGERSYDIYSRLLKER+VF+ G++ D  A L+ AQLLFLE+ENP K+I
Sbjct: 24  LGLVPIVVETSGRGERSYDIYSRLLKERLVFMVGEVNDQTANLVVAQLLFLESENPDKDI 83

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG V+AGMAIYDTMQFIKP +ST CMG AASMG+ LL++G KG RFALPN+R+
Sbjct: 84  SLYINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRV 143

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDIE  A++I+ +K RLN +  ++ G+  E + +  DRD+ MS+ +A
Sbjct: 144 MIHQPLGGARGQASDIEIQAREILYLKERLNHLLAQHTGQDVERIARDTDRDNFMSSEDA 203

Query: 196 CDWGVVDKVLMSR 208
             +G++D+VL+ R
Sbjct: 204 KAYGLIDQVLLKR 216


>gi|322418659|ref|YP_004197882.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacter sp.
           M18]
 gi|320125046|gb|ADW12606.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacter sp.
           M18]
          Length = 199

 Score =  263 bits (672), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 117/192 (60%), Positives = 158/192 (82%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+VVEQT RGERSYDIYSRLLK+RI+F+ G I+D++A L+ AQLLFLEAE+P K+I L
Sbjct: 2   LVPIVVEQTGRGERSYDIYSRLLKDRIIFLGGGIDDNVANLVIAQLLFLEAEDPDKDIHL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVTAGMAIYDTM++IK P+ST C+GQAASMG+ LLS GEKG RF+L N+RI++
Sbjct: 62  YINSPGGVVTAGMAIYDTMRYIKAPVSTICIGQAASMGAFLLSGGEKGKRFSLANSRIMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQA+DI  HA++I+++K +LNE+  ++ G+++E+V    +RD+ MS  EA  
Sbjct: 122 HQPLGGFQGQATDIHIHAKEILRMKDQLNELLAEHTGQSFEKVAADTERDYFMSGEEAKS 181

Query: 198 WGVVDKVLMSRI 209
           +G++D ++   +
Sbjct: 182 YGIIDAIVTRNV 193


>gi|195473623|ref|XP_002089092.1| GE18928 [Drosophila yakuba]
 gi|194175193|gb|EDW88804.1| GE18928 [Drosophila yakuba]
          Length = 253

 Score =  263 bits (672), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 121/200 (60%), Positives = 158/200 (79%)

Query: 6   CAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF 65
           C  + +    + L+PMVVEQT RGER+YDI+SRLLKERI+ + G I D +++ + AQLLF
Sbjct: 17  CGSRANSVRNINLIPMVVEQTGRGERAYDIFSRLLKERIICLMGNITDDISSTVVAQLLF 76

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L++EN  K I LYINSPGGVVTAG+AIYDTMQ++KPPI+T+C+GQA SMGSLLL+AG  G
Sbjct: 77  LQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPIATWCVGQACSMGSLLLAAGAPG 136

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
           MR++LPNARI++HQPSGG  GQA+DI  HA++I+KIKR+L  IYVK+   TYEE+   ++
Sbjct: 137 MRYSLPNARIMIHQPSGGAQGQATDILIHAEEIIKIKRQLTNIYVKHAKNTYEEMCGRME 196

Query: 186 RDHIMSASEACDWGVVDKVL 205
           RDH M+  EA   G++D VL
Sbjct: 197 RDHFMTPEEAKVLGIIDHVL 216


>gi|152978444|ref|YP_001344073.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           succinogenes 130Z]
 gi|171704240|sp|A6VME1|CLPP_ACTSZ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|150840167|gb|ABR74138.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Actinobacillus succinogenes 130Z]
          Length = 194

 Score =  263 bits (672), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 125/193 (64%), Positives = 159/193 (82%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMV+EQT+RGERSYDIYSRLLKER++F++G++ED+MA LI AQLLFLE+E+P K+I
Sbjct: 1   MALVPMVIEQTSRGERSYDIYSRLLKERVIFLSGEVEDNMANLIVAQLLFLESEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGG VTAGMAIYDTMQFIKP + T C+GQA SMG+ LL+ G  G R ALPNAR+
Sbjct: 61  NLYINSPGGSVTAGMAIYDTMQFIKPDVRTLCIGQACSMGAFLLAGGAAGKRAALPNARV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQASDI+ HAQ+I+KIK  LNE    + G+  E++EK  DRD+ MSA EA
Sbjct: 121 MIHQPLGGFRGQASDIQIHAQEILKIKHTLNERLAFHSGQPLEQIEKDTDRDNFMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++D VL+ R
Sbjct: 181 QNYGLIDSVLVKR 193


>gi|163857103|ref|YP_001631401.1| ATP-dependent Clp protease proteolytic subunit [Bordetella petrii
           DSM 12804]
 gi|226706441|sp|A9IR54|CLPP_BORPD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|163260831|emb|CAP43133.1| ATP-dependent Clp protease proteolytic subunit [Bordetella petrii]
          Length = 217

 Score =  263 bits (672), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 119/193 (61%), Positives = 153/193 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG +PMV+EQ+ RGER+YDIYSRLL+ER++F+ G + D+ A LI AQLLFLE+ENP K+I
Sbjct: 22  LGYIPMVIEQSGRGERAYDIYSRLLRERLIFLVGPVNDNTANLIVAQLLFLESENPDKDI 81

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG V AGMAIYDTMQF+KP +ST C G AASMG+ LL+AG+KG RF LPN+RI
Sbjct: 82  SLYINSPGGSVYAGMAIYDTMQFVKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRI 141

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQASDI+  A++I+ ++ RLN I  +N G+  E +    +RD+ MSA +A
Sbjct: 142 MIHQPSGGAQGQASDIQIQAREILDLRERLNRILAENTGQPVERIAVDTERDNFMSAEDA 201

Query: 196 CDWGVVDKVLMSR 208
             +G+VDKVL SR
Sbjct: 202 VSYGLVDKVLASR 214


>gi|317407024|gb|EFV87052.1| ATP-dependent Clp protease proteolytic subunit [Achromobacter
           xylosoxidans C54]
          Length = 201

 Score =  263 bits (671), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 116/191 (60%), Positives = 156/191 (81%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQ+ RGERS+DIYSRLL+ERI+F++G++ D ++ L+CAQLLFLEAENP K I +
Sbjct: 7   LVPMVVEQSGRGERSFDIYSRLLRERIIFLSGEVNDAVSALVCAQLLFLEAENPGKPIHM 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+T+G+A+YDTMQFIK P+ T CMG A SMGS LL AGE G R AL NA + +
Sbjct: 67  YINSPGGVITSGLAMYDTMQFIKSPVHTLCMGTARSMGSFLLMAGEPGKRAALANASLHV 126

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQASD+  HA+++ + K+R+  +Y ++CG++YE+VE++LDRD  M+A EA +
Sbjct: 127 HQPLGGFQGQASDMLIHAEEMQRTKQRIIRLYAEHCGRSYEDVERSLDRDRYMTAEEAVE 186

Query: 198 WGVVDKVLMSR 208
           WG++D V+ +R
Sbjct: 187 WGLIDHVMDAR 197


>gi|325479715|gb|EGC82805.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 197

 Score =  263 bits (671), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 117/191 (61%), Positives = 158/191 (82%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP VVEQTNRGER+YDIYSRLLK+RI+F++G++ D ++ +I AQLLFLE+E+P K+I  
Sbjct: 7   LVPTVVEQTNRGERAYDIYSRLLKDRIIFLSGEVRDEISDIIIAQLLFLESEDPDKDIQF 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G+AIYDTM +IKP +ST C+GQAASM ++LLS+G KG RF+LP++ I++
Sbjct: 67  YINSPGGVVTSGLAIYDTMNYIKPDVSTICIGQAASMAAVLLSSGAKGKRFSLPSSNIMI 126

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQASDI   A+ I+KIK RLN+I   N G++ +++EK  DRD  MSA+EA +
Sbjct: 127 HQPSGGAQGQASDIVIQAEQIIKIKERLNKILSDNTGQSLKKIEKDTDRDFAMSAAEALE 186

Query: 198 WGVVDKVLMSR 208
           +G++DKV+ S+
Sbjct: 187 YGLIDKVIESK 197


>gi|78043074|ref|YP_359188.1| ATP-dependent Clp protease proteolytic subunit [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|90101405|sp|Q3AF96|CLPP_CARHZ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|77995189|gb|ABB14088.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 195

 Score =  263 bits (671), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 116/191 (60%), Positives = 161/191 (84%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+V+EQT+RGERSYDI+SRLLK+R +F+ G I+DH+A L+ AQ+LFLEAE+P+K+I L
Sbjct: 4   LVPIVIEQTSRGERSYDIWSRLLKDRTIFIGGPIDDHVANLVIAQMLFLEAEDPEKDIHL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+TAGMAIYDTMQ+IKP +ST C+GQAASMG+ LL+AG KG RF+LP ARI++
Sbjct: 64  YINSPGGVITAGMAIYDTMQYIKPDVSTICIGQAASMGAFLLAAGAKGKRFSLPYARIMI 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DI+ HA++I++++  LNE+  K+ G+  E++E+  +RD  MSA+EA +
Sbjct: 124 HQPLGGVQGQATDIDIHAREILRMRDMLNELLTKHTGQPKEKIERDTERDFFMSAAEAKE 183

Query: 198 WGVVDKVLMSR 208
           +G++D+V+  R
Sbjct: 184 YGIIDEVITVR 194


>gi|30248062|ref|NP_840132.1| Clp protease [Nitrosomonas europaea ATCC 19718]
 gi|60389763|sp|Q82Y57|CLPP_NITEU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|30179947|emb|CAD83942.1| Clp protease [Nitrosomonas europaea ATCC 19718]
          Length = 214

 Score =  263 bits (671), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 117/193 (60%), Positives = 156/193 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LGL+PMV+E + RGER+YDIYSRLL+ERI+F+ G + +  A L+ AQLLFLE+EN +K+I
Sbjct: 17  LGLIPMVIETSGRGERAYDIYSRLLRERIIFLVGPVTETSANLVIAQLLFLESENSEKDI 76

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG+VTAG+A+YDT+QFIKP +ST C+GQAASMG+ LL+AG KG R+ LPN+R+
Sbjct: 77  FLYINSPGGLVTAGLAVYDTIQFIKPDVSTLCVGQAASMGAFLLTAGAKGKRYCLPNSRV 136

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQASDIE HA++I+ +K RLNEI  K+ G+T + +E+  DRD+ + A  A
Sbjct: 137 MIHQPLGGFQGQASDIEIHAKEILALKSRLNEIMAKHTGQTVKAIERDTDRDNFLGAEAA 196

Query: 196 CDWGVVDKVLMSR 208
             +G+VD VL SR
Sbjct: 197 VKYGLVDAVLTSR 209


>gi|163781838|ref|ZP_02176838.1| ATP-dependent Clp protease proteolytic subunit [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159883058|gb|EDP76562.1| ATP-dependent Clp protease proteolytic subunit [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 201

 Score =  263 bits (671), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 122/199 (61%), Positives = 162/199 (81%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           D ++V   LVP+V+EQT RGER+YDIYSRLL++RIV +   I+DH+A LI AQLLFLE++
Sbjct: 2   DIKEVTNQLVPIVIEQTPRGERAYDIYSRLLQDRIVLLGFPIDDHVANLIVAQLLFLESQ 61

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           +P K+I LYINSPGG VTAGMA+YDTMQ+IKP + T C+GQAASMG++LL+AG KG R+A
Sbjct: 62  DPDKDIYLYINSPGGSVTAGMAVYDTMQYIKPDVVTICIGQAASMGAVLLAAGAKGKRYA 121

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LP++RI++HQP GG  GQA+DI  HA++I +IKR LNEI  K+ G+  E++EK ++RD+ 
Sbjct: 122 LPHSRIMIHQPLGGIQGQATDIIIHAEEIKRIKRMLNEILAKHTGQDLEKIEKDVERDYF 181

Query: 190 MSASEACDWGVVDKVLMSR 208
           MSA EA D+GV+DKV+  R
Sbjct: 182 MSAEEAKDYGVIDKVIEKR 200


>gi|148263972|ref|YP_001230678.1| ATP-dependent Clp protease proteolytic subunit [Geobacter
           uraniireducens Rf4]
 gi|189082459|sp|A5GFA0|CLPP_GEOUR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|146397472|gb|ABQ26105.1| ATP-dependent Clp protease proteolytic subunit ClpP [Geobacter
           uraniireducens Rf4]
          Length = 199

 Score =  263 bits (671), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 117/188 (62%), Positives = 157/188 (83%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+VVEQT RGERSYDIYSRLLK+RIVF+ G I+D ++ L+ AQLLFLEAE+P K+I L
Sbjct: 2   LVPIVVEQTGRGERSYDIYSRLLKDRIVFLGGAIDDAISNLVIAQLLFLEAEDPDKDIHL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVTAGMAIYDTM++IK P+ST C+GQAASMG+ LLS GEKG RF+L N+RI++
Sbjct: 62  YINSPGGVVTAGMAIYDTMRYIKAPVSTICVGQAASMGAFLLSGGEKGKRFSLTNSRIMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQA+DI  HAQ+I+++K++LNE+  ++ G+  E++E   +RD+ MS  +A +
Sbjct: 122 HQPLGGFQGQATDIHIHAQEILRMKKKLNELMAEHTGQPVEKLEADTERDYFMSGEDAKN 181

Query: 198 WGVVDKVL 205
           +G++D ++
Sbjct: 182 YGIIDSII 189


>gi|294788594|ref|ZP_06753836.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Simonsiella
           muelleri ATCC 29453]
 gi|294483471|gb|EFG31156.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Simonsiella
           muelleri ATCC 29453]
          Length = 206

 Score =  263 bits (671), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 116/193 (60%), Positives = 155/193 (80%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P V+EQ+ RGER++DIYSRLLKERI+F+ G + DH A L+ AQLLFLE+ENP K+I  
Sbjct: 10  LIPTVIEQSGRGERAFDIYSRLLKERIIFLVGPVNDHTANLVVAQLLFLESENPDKDIYF 69

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AGM+I+DTM FIKP + T C+GQAASMG+ LLSAG KG RFALPN+RI++
Sbjct: 70  YINSPGGSVSAGMSIFDTMNFIKPDVQTLCLGQAASMGAFLLSAGAKGKRFALPNSRIMI 129

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASDIE HA++++K+K +LN +  K+ G+  E++E+  DRD+ MSA  A
Sbjct: 130 HQPLISGGLGGQASDIEIHARELIKLKEKLNNLLAKHTGQPLEKIERDTDRDNFMSAQTA 189

Query: 196 CDWGVVDKVLMSR 208
            ++G++DKV+ +R
Sbjct: 190 MEYGLIDKVITNR 202


>gi|264677387|ref|YP_003277293.1| ATP-dependent Clp protease proteolytic subunit [Comamonas
           testosteroni CNB-2]
 gi|299533085|ref|ZP_07046471.1| ATP-dependent Clp protease, proteolytic subunit [Comamonas
           testosteroni S44]
 gi|262207899|gb|ACY31997.1| ATP-dependent Clp protease, proteolytic subunit [Comamonas
           testosteroni CNB-2]
 gi|298718970|gb|EFI59941.1| ATP-dependent Clp protease, proteolytic subunit [Comamonas
           testosteroni S44]
          Length = 202

 Score =  263 bits (671), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 116/193 (60%), Positives = 155/193 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG+VPMV+EQ+ RGERSYDIYSRLLKER++F+ G++ D  A L+ AQLLFLE+ENP K+I
Sbjct: 9   LGMVPMVIEQSGRGERSYDIYSRLLKERVIFLVGEVNDQTANLVVAQLLFLESENPDKDI 68

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S YINSPGG VTAGMAI+DTM FIKP +ST C G AASMG+ LLSAG KG R+ALPNA++
Sbjct: 69  SFYINSPGGSVTAGMAIFDTMNFIKPDVSTLCTGMAASMGAFLLSAGAKGKRYALPNAQV 128

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE HA++I+K + RLN+I  +  G+  E+++   +RD+ +SA EA
Sbjct: 129 MIHQPLGGARGQATEIEIHAREIIKTRERLNKILAERTGQPLEKIQNDTERDYFLSADEA 188

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD+V+  R
Sbjct: 189 KEYGLVDQVISKR 201


>gi|284047883|ref|YP_003398222.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Acidaminococcus fermentans DSM 20731]
 gi|283952104|gb|ADB46907.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Acidaminococcus fermentans DSM 20731]
          Length = 197

 Score =  263 bits (671), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 114/190 (60%), Positives = 159/190 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP+VVEQT++GERSYDIYSRLLK+RI+FVTG+IEDHMA LI AQLLFLE+E+P K++
Sbjct: 1   MSYVPIVVEQTSKGERSYDIYSRLLKDRIIFVTGEIEDHMANLIIAQLLFLESEDPDKDV 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG V+AG+AIYDTMQ+I+P +ST C+G AASM S+LL+AG KG R+ALP++R+
Sbjct: 61  HLYINSPGGSVSAGLAIYDTMQYIRPDVSTICVGMAASMASVLLAAGTKGKRYALPHSRV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DIE HA++I++I+  +N+I   + G+T E++    +RDH M+A EA
Sbjct: 121 MIHQPLGGAQGQATDIEIHAREILRIREEMNQILASHTGQTPEQIRLDTERDHFMTAEEA 180

Query: 196 CDWGVVDKVL 205
            ++G++D+V+
Sbjct: 181 ANYGLIDQVV 190


>gi|90407420|ref|ZP_01215604.1| ATP-dependent Clp protease proteolytic subunit [Psychromonas sp.
           CNPT3]
 gi|90311451|gb|EAS39552.1| ATP-dependent Clp protease proteolytic subunit [Psychromonas sp.
           CNPT3]
          Length = 207

 Score =  263 bits (671), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 117/191 (61%), Positives = 154/191 (80%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+PMVVEQT +GERSYDIYSRLLKER++F+TGQ+ED MA +I AQLLFLE+E+P+K+IS+
Sbjct: 16  LIPMVVEQTAKGERSYDIYSRLLKERVIFLTGQVEDQMANVITAQLLFLESESPEKDISI 75

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG ++AGMAIYDTMQFIKP +ST CMG AASMG+ LL++G  G R  LPNA++++
Sbjct: 76  YINSPGGSISAGMAIYDTMQFIKPDVSTVCMGMAASMGAFLLASGAPGKRHCLPNAKVMI 135

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQASD E HA++I+  K+ +NE+   + G+  + V K  DRD+ M A+EA +
Sbjct: 136 HQPLGGFQGQASDFEIHAKEILATKKLMNELLAFHTGQDIDVVTKDTDRDNFMRANEALE 195

Query: 198 WGVVDKVLMSR 208
           +G+VD +L  R
Sbjct: 196 YGIVDSILTKR 206


>gi|195578155|ref|XP_002078931.1| GD23683 [Drosophila simulans]
 gi|194190940|gb|EDX04516.1| GD23683 [Drosophila simulans]
          Length = 253

 Score =  263 bits (671), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 121/200 (60%), Positives = 158/200 (79%)

Query: 6   CAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF 65
           C  + +    + L+PMVVEQT RGER+YDI+SRLLKERI+ + G I D +++ + AQLLF
Sbjct: 17  CGGRANSVRNINLIPMVVEQTGRGERAYDIFSRLLKERIICLMGNITDDISSTVVAQLLF 76

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L++EN  K I LYINSPGGVVTAG+AIYDTMQ++KPPI+T+C+GQA SMGSLLL+AG  G
Sbjct: 77  LQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPIATWCVGQACSMGSLLLAAGAPG 136

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
           MR++LPNARI++HQPSGG  GQA+DI  HA++I+KIKR+L  IYVK+   TYEE+   ++
Sbjct: 137 MRYSLPNARIMIHQPSGGAQGQATDILIHAEEIIKIKRQLTNIYVKHAKNTYEEMCGRME 196

Query: 186 RDHIMSASEACDWGVVDKVL 205
           RDH M+  EA   G++D VL
Sbjct: 197 RDHFMTPEEAKVLGIIDHVL 216


>gi|329120061|ref|ZP_08248731.1| ATP-dependent Clp protease, protease subunit [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327463592|gb|EGF09910.1| ATP-dependent Clp protease, protease subunit [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 211

 Score =  262 bits (670), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 115/195 (58%), Positives = 158/195 (81%), Gaps = 2/195 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P V+EQ+ RGER++DIYSRLLKERI+F+ G + DH A L+ AQ+LFLE+ENP K+I  
Sbjct: 10  LIPTVIEQSGRGERAFDIYSRLLKERIIFLIGPVNDHTANLVVAQMLFLESENPDKDIFF 69

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM+++DTM FIKP +ST C+GQAASMG+ LLSAG KG RFALP++R+++
Sbjct: 70  YINSPGGSVTAGMSVFDTMNFIKPDVSTLCLGQAASMGAFLLSAGAKGKRFALPHSRVMI 129

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASDIE HA++++K+K+ LNE+  K+ G+  E++E+  DRD+ MSA  A
Sbjct: 130 HQPLISGGLGGQASDIEIHARELIKLKQTLNELLAKHTGQPIEKIERDTDRDNFMSAQAA 189

Query: 196 CDWGVVDKVLMSRID 210
            ++G++D+V+ +R D
Sbjct: 190 KEYGLIDQVIATRAD 204


>gi|195339773|ref|XP_002036491.1| GM18225 [Drosophila sechellia]
 gi|116811667|emb|CAL26000.1| CG5045 [Drosophila simulans]
 gi|194130371|gb|EDW52414.1| GM18225 [Drosophila sechellia]
          Length = 253

 Score =  262 bits (670), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 121/200 (60%), Positives = 158/200 (79%)

Query: 6   CAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF 65
           C  + +    + L+PMVVEQT RGER+YDI+SRLLKERI+ + G I D +++ + AQLLF
Sbjct: 17  CGGRANSVRNINLIPMVVEQTGRGERAYDIFSRLLKERIICLMGNITDDISSTVVAQLLF 76

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L++EN  K I LYINSPGGVVTAG+AIYDTMQ++KPPI+T+C+GQA SMGSLLL+AG  G
Sbjct: 77  LQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPIATWCVGQACSMGSLLLAAGAPG 136

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
           MR++LPNARI++HQPSGG  GQA+DI  HA++I+KIKR+L  IYVK+   TYEE+   ++
Sbjct: 137 MRYSLPNARIMIHQPSGGAQGQATDILIHAEEIIKIKRQLTNIYVKHAKNTYEEMCGRME 196

Query: 186 RDHIMSASEACDWGVVDKVL 205
           RDH M+  EA   G++D VL
Sbjct: 197 RDHFMTPEEAKVLGIIDHVL 216


>gi|116811645|emb|CAL25989.1| CG5045 [Drosophila melanogaster]
 gi|116811649|emb|CAL25991.1| CG5045 [Drosophila melanogaster]
 gi|116811651|emb|CAL25992.1| CG5045 [Drosophila melanogaster]
 gi|116811653|emb|CAL25993.1| CG5045 [Drosophila melanogaster]
 gi|116811655|emb|CAL25994.1| CG5045 [Drosophila melanogaster]
 gi|116811657|emb|CAL25995.1| CG5045 [Drosophila melanogaster]
 gi|116811659|emb|CAL25996.1| CG5045 [Drosophila melanogaster]
 gi|116811661|emb|CAL25997.1| CG5045 [Drosophila melanogaster]
 gi|116811663|emb|CAL25998.1| CG5045 [Drosophila melanogaster]
 gi|116811665|emb|CAL25999.1| CG5045 [Drosophila melanogaster]
 gi|223966785|emb|CAR93129.1| CG5045-PA [Drosophila melanogaster]
 gi|223966787|emb|CAR93130.1| CG5045-PA [Drosophila melanogaster]
 gi|223966789|emb|CAR93131.1| CG5045-PA [Drosophila melanogaster]
 gi|223966791|emb|CAR93132.1| CG5045-PA [Drosophila melanogaster]
 gi|223966795|emb|CAR93134.1| CG5045-PA [Drosophila melanogaster]
 gi|223966797|emb|CAR93135.1| CG5045-PA [Drosophila melanogaster]
 gi|223966799|emb|CAR93136.1| CG5045-PA [Drosophila melanogaster]
 gi|223966801|emb|CAR93137.1| CG5045-PA [Drosophila melanogaster]
 gi|223966803|emb|CAR93138.1| CG5045-PA [Drosophila melanogaster]
          Length = 253

 Score =  262 bits (670), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 121/200 (60%), Positives = 158/200 (79%)

Query: 6   CAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF 65
           C  + +    + L+PMVVEQT RGER+YDI+SRLLKERI+ + G I D +++ + AQLLF
Sbjct: 17  CGGRANSVRNINLIPMVVEQTGRGERAYDIFSRLLKERIICLMGNITDDISSTVVAQLLF 76

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L++EN  K I LYINSPGGVVTAG+AIYDTMQ++KPPI+T+C+GQA SMGSLLL+AG  G
Sbjct: 77  LQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPIATWCVGQACSMGSLLLAAGAPG 136

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
           MR++LPNARI++HQPSGG  GQA+DI  HA++I+KIKR+L  IYVK+   TYEE+   ++
Sbjct: 137 MRYSLPNARIMIHQPSGGAQGQATDILIHAEEIIKIKRQLTNIYVKHAKNTYEEMCGRME 196

Query: 186 RDHIMSASEACDWGVVDKVL 205
           RDH M+  EA   G++D VL
Sbjct: 197 RDHFMTPEEAKVLGIIDHVL 216


>gi|119945201|ref|YP_942881.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Psychromonas
           ingrahamii 37]
 gi|259585963|sp|A1SUW7|CLPP_PSYIN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|119863805|gb|ABM03282.1| ATP-dependent Clp protease proteolytic subunit ClpP [Psychromonas
           ingrahamii 37]
          Length = 207

 Score =  262 bits (670), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 118/199 (59%), Positives = 157/199 (78%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           +++ +   L+PMVVEQT +GERSYDIYSRLLKER++F+TG +EDH+A +I AQLLFLE+E
Sbjct: 8   NTDPISNALIPMVVEQTAKGERSYDIYSRLLKERVIFLTGPVEDHVANVIAAQLLFLESE 67

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           +P+K+I +YINSPGG ++AGMAIYDTMQFIKP +ST CMG AASMG+ LL++G  G R  
Sbjct: 68  SPEKDIFIYINSPGGSISAGMAIYDTMQFIKPDVSTVCMGMAASMGAFLLASGAPGKRHC 127

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPNA++++HQP GGF GQASD E HA++I+  K R+NE+   + GK  E + +  DRD+ 
Sbjct: 128 LPNAKVMIHQPLGGFQGQASDFEIHAKEILATKHRMNELLAFHTGKDIEIIAQDTDRDNF 187

Query: 190 MSASEACDWGVVDKVLMSR 208
           M ASEA ++G+VD VL  R
Sbjct: 188 MRASEAVEYGIVDSVLTHR 206


>gi|326502578|dbj|BAJ95352.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326506866|dbj|BAJ91474.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 300

 Score =  262 bits (670), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 120/192 (62%), Positives = 159/192 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMVVE T+RGER+YDI+SRLLKERIV + G I D  A+L+ AQLLFLE+ENP K IS
Sbjct: 71  GLVPMVVETTSRGERAYDIFSRLLKERIVCIHGPIADETASLVVAQLLFLESENPLKPIS 130

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGVVTAG+AIYDTMQ+I+ P++T C+GQAASMGSLLL+AG +G R ALPNAR++
Sbjct: 131 LYINSPGGVVTAGLAIYDTMQYIRCPVNTICIGQAASMGSLLLAAGARGERRALPNARVM 190

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  GQA+DI   A++I+K++ RLN+IY K+ G+  +++E+ ++RD  M   EA 
Sbjct: 191 IHQPSGGAQGQATDIAIQAKEILKLRDRLNKIYAKHTGQNIDKIEQCMERDLFMDPEEAR 250

Query: 197 DWGVVDKVLMSR 208
           +WG++D+V+ +R
Sbjct: 251 EWGLIDEVIENR 262


>gi|116811647|emb|CAL25990.1| CG5045 [Drosophila melanogaster]
          Length = 253

 Score =  262 bits (670), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 121/200 (60%), Positives = 158/200 (79%)

Query: 6   CAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF 65
           C  + +    + L+PMVVEQT RGER+YDI+SRLLKERI+ + G I D +++ + AQLLF
Sbjct: 17  CGGRANSVRNINLIPMVVEQTGRGERAYDIFSRLLKERIICLMGNITDDISSTVVAQLLF 76

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L++EN  K I LYINSPGGVVTAG+AIYDTMQ++KPPI+T+C+GQA SMGSLLL+AG  G
Sbjct: 77  LQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPIATWCVGQACSMGSLLLAAGAPG 136

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
           MR++LPNARI++HQPSGG  GQA+DI  HA++I+KIKR+L  IYVK+   TYEE+   ++
Sbjct: 137 MRYSLPNARIMIHQPSGGAQGQATDILIHAEEIIKIKRQLTNIYVKHAKNTYEEMCGRME 196

Query: 186 RDHIMSASEACDWGVVDKVL 205
           RDH M+  EA   G++D VL
Sbjct: 197 RDHFMTPEEAKVLGIIDHVL 216


>gi|326492708|dbj|BAJ90210.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 285

 Score =  262 bits (670), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 120/192 (62%), Positives = 159/192 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMVVE T+RGER+YDI+SRLLKERIV + G I D  A+L+ AQLLFLE+ENP K IS
Sbjct: 56  GLVPMVVETTSRGERAYDIFSRLLKERIVCIHGPIADETASLVVAQLLFLESENPLKPIS 115

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGVVTAG+AIYDTMQ+I+ P++T C+GQAASMGSLLL+AG +G R ALPNAR++
Sbjct: 116 LYINSPGGVVTAGLAIYDTMQYIRCPVNTICIGQAASMGSLLLAAGARGERRALPNARVM 175

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  GQA+DI   A++I+K++ RLN+IY K+ G+  +++E+ ++RD  M   EA 
Sbjct: 176 IHQPSGGAQGQATDIAIQAKEILKLRDRLNKIYAKHTGQNIDKIEQCMERDLFMDPEEAR 235

Query: 197 DWGVVDKVLMSR 208
           +WG++D+V+ +R
Sbjct: 236 EWGLIDEVIENR 247


>gi|167855227|ref|ZP_02477997.1| bifunctional indole-3-glycerol phosphate
           synthase/phosphoribosylanthranilate isomerase
           [Haemophilus parasuis 29755]
 gi|167853680|gb|EDS24924.1| bifunctional indole-3-glycerol phosphate
           synthase/phosphoribosylanthranilate isomerase
           [Haemophilus parasuis 29755]
          Length = 193

 Score =  262 bits (670), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 117/193 (60%), Positives = 157/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++PMVVEQ+++GER+YDIYSRLLKERI+F+ G +ED MA LI AQ+LFLEAE+P+K+I
Sbjct: 1   MAVIPMVVEQSSKGERAYDIYSRLLKERIIFLNGGVEDEMAKLIIAQMLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVTAG+AIYDTM FIKP +ST CMGQA SMG+ LLS+G KG RFALPN+R+
Sbjct: 61  YLYINSPGGVVTAGLAIYDTMNFIKPDVSTLCMGQACSMGAFLLSSGAKGKRFALPNSRV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG+ GQA+DI+ HAQ+I+K+K  L     ++C + +E+V +  +RD+ MSA EA
Sbjct: 121 MIHQPLGGYRGQATDIQIHAQEILKLKEMLTRKMAEHCSQPFEKVAQDTERDNFMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D V+  R
Sbjct: 181 KAYGLIDDVVTKR 193


>gi|326519674|dbj|BAK00210.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 256

 Score =  262 bits (670), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 120/192 (62%), Positives = 155/192 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+E T+RGER+YDI+SRLLKERIV + G I D  A+L+ AQLLFLE+ENP K I 
Sbjct: 30  GLVPMVIEHTSRGERAYDIFSRLLKERIVCIHGPIADDTASLVVAQLLFLESENPAKPIH 89

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGVVTAG+AIYDTMQ+I+ P++T C+GQAASMGSLLL+AG  G R ALPNAR++
Sbjct: 90  LYINSPGGVVTAGLAIYDTMQYIRSPVTTLCIGQAASMGSLLLAAGAPGERRALPNARVM 149

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG SGQASDI   A++I+K++ RLN+IY K+ G+  + +E+ ++RD  M   EA 
Sbjct: 150 IHQPSGGASGQASDIAIQAKEILKVRDRLNKIYAKHTGQAIDRIEQCMERDMFMDPVEAH 209

Query: 197 DWGVVDKVLMSR 208
            WG++D+V+  R
Sbjct: 210 AWGLIDEVIEHR 221


>gi|303248988|ref|ZP_07335234.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
           fructosovorans JJ]
 gi|302489637|gb|EFL49575.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
           fructosovorans JJ]
          Length = 204

 Score =  262 bits (669), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 117/190 (61%), Positives = 155/190 (81%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP+V+E T R ER+YDIYSRLLK+RI+ +   ++D++A LICAQLLFLE+E+P+KEISLY
Sbjct: 4   VPIVIETTGRSERAYDIYSRLLKDRIILLGSAVDDYVANLICAQLLFLESEDPEKEISLY 63

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGVV+AG+AIYDTMQ++ PP+ST CMGQAASMG+LLL AG  G R+ALP++RI++H
Sbjct: 64  INSPGGVVSAGLAIYDTMQYVMPPVSTLCMGQAASMGALLLCAGATGTRYALPHSRIMIH 123

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGGF GQA+DIE HA++  + +  LNEI  K+ G+  E+++   +RD+ MSA EA  +
Sbjct: 124 QPSGGFQGQATDIEIHARETRRTREALNEIMAKHTGQPIEKIQVDTERDNFMSAEEAVAY 183

Query: 199 GVVDKVLMSR 208
           G+VDKV  SR
Sbjct: 184 GLVDKVFASR 193


>gi|296134054|ref|YP_003641301.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermincola
           sp. JR]
 gi|296032632|gb|ADG83400.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermincola
           potens JR]
          Length = 194

 Score =  262 bits (669), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 120/193 (62%), Positives = 156/193 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQTNRGER+YDIYSRLLK+RI+F+ G I+D +A L+ AQ+LFLEAE+P K+I
Sbjct: 1   MNLVPIVVEQTNRGERAYDIYSRLLKDRIIFIGGPIDDMVANLVIAQMLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAGMAIYDTMQ+IKP +ST CMGQAASMGS LL+AG KG R+ALP  RI
Sbjct: 61  HIYINSPGGVVTAGMAIYDTMQYIKPDVSTICMGQAASMGSFLLAAGTKGKRYALPYTRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+ HA++I+++K  LNE+  K+ G+  E + +  +RD  MSA EA
Sbjct: 121 MIHQPLGGVQGQATDIDIHAKEILRMKSVLNELLAKHTGQPVEVIARDTERDFFMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD+V+  R
Sbjct: 181 RKYGIVDEVISVR 193


>gi|308070425|ref|YP_003872030.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           [Paenibacillus polymyxa E681]
 gi|310643606|ref|YP_003948364.1| ATP-dependent clp protease proteolytic subunit [Paenibacillus
           polymyxa SC2]
 gi|305859704|gb|ADM71492.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           [Paenibacillus polymyxa E681]
 gi|309248556|gb|ADO58123.1| ATP-dependent Clp protease proteolytic subunit [Paenibacillus
           polymyxa SC2]
          Length = 211

 Score =  262 bits (669), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 122/204 (59%), Positives = 159/204 (77%)

Query: 8   KKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
            K+   V + LVPMVVEQTNRGERSYDIYSRLLK+RI+F++G I+D +A L+ AQLLFL 
Sbjct: 8   NKEKRLVVMSLVPMVVEQTNRGERSYDIYSRLLKDRIIFLSGPIDDDVANLVIAQLLFLS 67

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AE+P+K+I+LYINSPGG VTAGM IYDTMQFIKP +ST C+G AASMGSLLL+AG  G R
Sbjct: 68  AEDPEKDINLYINSPGGSVTAGMGIYDTMQFIKPDVSTICVGMAASMGSLLLTAGAPGKR 127

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           +AL N+ +++HQP GG  GQASD+  HA  I+K + +LN+IYV+  G+  E++E+  DRD
Sbjct: 128 YALTNSEVMIHQPLGGIQGQASDMLIHADWIIKTRAKLNQIYVERTGQPLEKIERDTDRD 187

Query: 188 HIMSASEACDWGVVDKVLMSRIDI 211
             M A EA  +G++D+VL   I++
Sbjct: 188 FFMEAEEAKAYGIIDQVLSKPINL 211


>gi|239815493|ref|YP_002944403.1| ATP-dependent Clp protease proteolytic subunit [Variovorax
           paradoxus S110]
 gi|259491242|sp|C5CJT4|CLPP_VARPS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|239802070|gb|ACS19137.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Variovorax
           paradoxus S110]
          Length = 202

 Score =  262 bits (669), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 117/193 (60%), Positives = 156/193 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG++PMV+EQ+ RGERSYDIYSRLLKERI+F+ G++ D  A L+ AQLLFLE+ENP K+I
Sbjct: 9   LGMIPMVIEQSGRGERSYDIYSRLLKERIIFLVGEVNDQTANLVVAQLLFLESENPDKDI 68

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S YINSPGG V+AGMAIYDTMQFIKP +ST C+G AASMG+ LL+AGEKG RF+LPN++I
Sbjct: 69  SFYINSPGGSVSAGMAIYDTMQFIKPDVSTMCIGFAASMGAFLLAAGEKGKRFSLPNSKI 128

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQ  GG  GQA+DIE HA+DI++ K ++N I  +  G+  E+V+   +RD+ ++A EA
Sbjct: 129 MIHQVLGGARGQATDIEIHARDILRTKDQMNRILAERTGQPLEKVKSDTERDYFLTADEA 188

Query: 196 CDWGVVDKVLMSR 208
            D+G+VD+V+  R
Sbjct: 189 KDYGLVDQVIAKR 201


>gi|33592842|ref|NP_880486.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
           pertussis Tohama I]
 gi|33596622|ref|NP_884265.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
           parapertussis 12822]
 gi|33601237|ref|NP_888797.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
           bronchiseptica RB50]
 gi|67460369|sp|Q7VXI7|CLPP_BORPE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|67460372|sp|Q7W8X2|CLPP_BORPA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|67460374|sp|Q7WK83|CLPP_BORBR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|33572490|emb|CAE42062.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
           pertussis Tohama I]
 gi|33573323|emb|CAE37306.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
           parapertussis]
 gi|33575672|emb|CAE32750.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
           bronchiseptica RB50]
          Length = 217

 Score =  262 bits (669), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 118/193 (61%), Positives = 152/193 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG +PMV+EQ+ RGER+YDIYSRLL+ER++F+ G + D+ A L+ AQLLFLE+ENP K+I
Sbjct: 22  LGYIPMVIEQSGRGERAYDIYSRLLRERLIFLVGPVNDNTANLVVAQLLFLESENPDKDI 81

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S YINSPGG V AGMAIYDTMQFIKP +ST C G AASMG+ LL+AG+KG RF LPN+RI
Sbjct: 82  SFYINSPGGSVYAGMAIYDTMQFIKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRI 141

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQASDI+  A++I+ ++ RLN I  +N G+  E +    +RD+ MSA +A
Sbjct: 142 MIHQPSGGAQGQASDIQIQAREILDLRERLNRILAENTGQPVERIAVDTERDNFMSAEDA 201

Query: 196 CDWGVVDKVLMSR 208
             +G+VDKVL SR
Sbjct: 202 VSYGLVDKVLTSR 214


>gi|322515314|ref|ZP_08068311.1| ATP-dependent Clp protease, protease subunit [Actinobacillus ureae
           ATCC 25976]
 gi|322118690|gb|EFX90902.1| ATP-dependent Clp protease, protease subunit [Actinobacillus ureae
           ATCC 25976]
          Length = 217

 Score =  262 bits (669), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 119/193 (61%), Positives = 156/193 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++PMVVEQT++GERSYDIYSRLLKERI+F+ G++EDHMA LI AQLLFLE+E+P+K+I
Sbjct: 22  MAVIPMVVEQTSKGERSYDIYSRLLKERIIFLNGEVEDHMANLIVAQLLFLESEDPEKDI 81

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVTAG+AIYDTM FIKP ++T C GQA SMG+ LLS G KG RFALP+AR+
Sbjct: 82  YLYINSPGGVVTAGLAIYDTMNFIKPDVATLCTGQACSMGAFLLSGGAKGKRFALPHARV 141

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+  AQ+I+K+K  L +    + G+ +E+V    +RD+ MSA EA
Sbjct: 142 MIHQPLGGARGQATDIQIQAQEILKLKEMLTKRMAGHSGQPFEKVAADTERDNFMSAFEA 201

Query: 196 CDWGVVDKVLMSR 208
            ++G++DKVL  R
Sbjct: 202 AEYGLIDKVLTHR 214


>gi|17546430|ref|NP_519832.1| ATP-dependent Clp protease proteolytic subunit [Ralstonia
           solanacearum GMI1000]
 gi|83745913|ref|ZP_00942970.1| ATP-dependent Clp protease proteolytic subunit [Ralstonia
           solanacearum UW551]
 gi|207724193|ref|YP_002254591.1| atp-atp-dependent clp protease proteolytic subunit (endopeptidase
           clp) protein [Ralstonia solanacearum MolK2]
 gi|207743049|ref|YP_002259441.1| atp-atp-dependent clp protease proteolytic subunit (endopeptidase
           clp) protein [Ralstonia solanacearum IPO1609]
 gi|300691404|ref|YP_003752399.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
           [Ralstonia solanacearum PSI07]
 gi|300703972|ref|YP_003745574.1| proteolytic subunit of clpa-clpp ATP-dependent serine protease
           [Ralstonia solanacearum CFBP2957]
 gi|22653696|sp|Q8XYP7|CLPP_RALSO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|17428728|emb|CAD15413.1| probable atp-atp-dependent clp protease proteolytic subunit
           (endopeptidase clp). transmembrane protein [Ralstonia
           solanacearum GMI1000]
 gi|83727603|gb|EAP74724.1| ATP-dependent Clp protease proteolytic subunit [Ralstonia
           solanacearum UW551]
 gi|206589403|emb|CAQ36365.1| atp-atp-dependent clp protease proteolytic subunit (endopeptidase
           clp) protein [Ralstonia solanacearum MolK2]
 gi|206594446|emb|CAQ61373.1| atp-atp-dependent clp protease proteolytic subunit (endopeptidase
           clp) protein [Ralstonia solanacearum IPO1609]
 gi|299066731|emb|CBJ37925.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
           [Ralstonia solanacearum CMR15]
 gi|299071635|emb|CBJ42959.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
           [Ralstonia solanacearum CFBP2957]
 gi|299078464|emb|CBJ51116.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
           [Ralstonia solanacearum PSI07]
          Length = 217

 Score =  262 bits (669), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 117/193 (60%), Positives = 155/193 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LGLVPMVVEQ+ RGER+YDIYSRLLKER++F+ G++ D  A L+ AQLLFLE+ENP K+I
Sbjct: 23  LGLVPMVVEQSGRGERAYDIYSRLLKERVIFMVGEVNDQTANLVVAQLLFLESENPDKDI 82

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG V+AG+A+YDTMQF+KP +ST CMG AASMG+ LL+AG KG R+ALPN+RI
Sbjct: 83  SLYINSPGGSVSAGLAMYDTMQFVKPDVSTLCMGMAASMGAFLLAAGAKGKRYALPNSRI 142

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDIE  A++I+ ++ RLN I  +  G+  +++ +  DRD+ MS  +A
Sbjct: 143 MIHQPLGGARGQASDIEIQAREILYLRERLNTILSEVTGQPVDKIARDTDRDNFMSGDQA 202

Query: 196 CDWGVVDKVLMSR 208
            ++G++DKVL  R
Sbjct: 203 KEYGLIDKVLARR 215


>gi|83644978|ref|YP_433413.1| ATP-dependent Clp protease proteolytic subunit ClpP [Hahella
           chejuensis KCTC 2396]
 gi|83633021|gb|ABC28988.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Hahella
           chejuensis KCTC 2396]
          Length = 213

 Score =  261 bits (668), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 121/194 (62%), Positives = 153/194 (78%), Gaps = 1/194 (0%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQT RGERSYDIYSRLLKERI+F+ GQ+EDHMA L+ AQLLFLE+ENP K+I 
Sbjct: 18  ALVPMVVEQTARGERSYDIYSRLLKERIIFLVGQVEDHMANLVVAQLLFLESENPDKDIH 77

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAG++IYDTMQFIKP +ST C+GQAASMG+LLLS G  G R+ LP++R++
Sbjct: 78  LYINSPGGSVTAGLSIYDTMQFIKPDVSTMCIGQAASMGALLLSGGAAGKRYCLPHSRVM 137

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP  GG  GQASDIE HA++I+ ++ +LN I  K+ G+  E + +  DRD  M A  A
Sbjct: 138 IHQPLLGGLQGQASDIEIHAKEILLLREKLNNILSKHTGQDIETIARDTDRDKFMDAEMA 197

Query: 196 CDWGVVDKVLMSRI 209
            ++G++D VL  R+
Sbjct: 198 KNYGLIDSVLDKRV 211


>gi|145589117|ref|YP_001155714.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145047523|gb|ABP34150.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 209

 Score =  261 bits (668), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 118/193 (61%), Positives = 155/193 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LGLVPMV+E + RGER+YDIYSRLL+ER+VF+ G++ D  A L+ AQLLFLE+ENP K+I
Sbjct: 16  LGLVPMVIETSGRGERAYDIYSRLLRERVVFLVGEVNDQTANLVIAQLLFLESENPDKDI 75

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG V+AG+AIYDTMQFIKP +ST CMG AASMG+ LL AGEKG R+ALPN+R+
Sbjct: 76  SLYINSPGGSVSAGLAIYDTMQFIKPHVSTLCMGMAASMGAFLLCAGEKGKRYALPNSRV 135

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDIE  A++I+ ++ RLN+I     G++ + + K  DRD+ MSA +A
Sbjct: 136 MIHQPLGGARGQASDIEIQAREILYLRERLNKILADRTGQSIDTIAKDTDRDNFMSAEQA 195

Query: 196 CDWGVVDKVLMSR 208
            ++G++DKV+  R
Sbjct: 196 REYGLIDKVIEKR 208


>gi|115447465|ref|NP_001047512.1| Os02g0634500 [Oryza sativa Japonica Group]
 gi|49388184|dbj|BAD25310.1| unknown protein [Oryza sativa Japonica Group]
 gi|113537043|dbj|BAF09426.1| Os02g0634500 [Oryza sativa Japonica Group]
 gi|215692767|dbj|BAG88235.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 298

 Score =  261 bits (668), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 118/193 (61%), Positives = 158/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
            GLVPMV+E T+RGER+YDI+SRLLKERIV + G I D  A+L+ AQLLFLE+ENP K +
Sbjct: 71  FGLVPMVIETTSRGERAYDIFSRLLKERIVLIHGPIADETASLVVAQLLFLESENPLKPV 130

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVTAG+AIYDTMQ+I+ P++T C+GQAASMGSLLL+AG +G R ALPNAR+
Sbjct: 131 HLYINSPGGVVTAGLAIYDTMQYIRCPVTTLCIGQAASMGSLLLAAGARGERRALPNARV 190

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+DI   A++I+K++ RLN+IY K+ G+  +++E+ ++RD  M   EA
Sbjct: 191 MIHQPSGGAQGQATDIAIQAKEILKLRDRLNKIYQKHTGQEIDKIEQCMERDLFMDPEEA 250

Query: 196 CDWGVVDKVLMSR 208
            DWG++D+V+ +R
Sbjct: 251 RDWGLIDEVIENR 263


>gi|315634780|ref|ZP_07890062.1| ATP-dependent Clp protease proteolytic subunit [Aggregatibacter
           segnis ATCC 33393]
 gi|315476332|gb|EFU67082.1| ATP-dependent Clp protease proteolytic subunit [Aggregatibacter
           segnis ATCC 33393]
          Length = 193

 Score =  261 bits (668), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 119/193 (61%), Positives = 157/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++PMVV+QT+RGER+YDIYSRLLK+R++F++G++ED+MA LI AQLLFLE+E+P K+I
Sbjct: 1   MSVIPMVVDQTSRGERAYDIYSRLLKDRVIFLSGEVEDNMANLIVAQLLFLESEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGG VTAGMAIYDTMQFIKP + T C+GQA SMG+ LL+ G  G R ALP+AR+
Sbjct: 61  NLYINSPGGSVTAGMAIYDTMQFIKPDVRTLCVGQACSMGAFLLAGGAPGKRGALPHARV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQASDI+ HAQ+I+KIK  LNE    + G+  E +EK  DRD+ MSA EA
Sbjct: 121 MIHQPLGGFRGQASDIQIHAQEILKIKGTLNERLAFHTGQPIETIEKDTDRDNFMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++D+V   R
Sbjct: 181 KNYGLIDEVFTKR 193


>gi|125582984|gb|EAZ23915.1| hypothetical protein OsJ_07636 [Oryza sativa Japonica Group]
          Length = 318

 Score =  261 bits (668), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 118/193 (61%), Positives = 158/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
            GLVPMV+E T+RGER+YDI+SRLLKERIV + G I D  A+L+ AQLLFLE+ENP K +
Sbjct: 71  FGLVPMVIETTSRGERAYDIFSRLLKERIVLIHGPIADETASLVVAQLLFLESENPLKPV 130

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVTAG+AIYDTMQ+I+ P++T C+GQAASMGSLLL+AG +G R ALPNAR+
Sbjct: 131 HLYINSPGGVVTAGLAIYDTMQYIRCPVTTLCIGQAASMGSLLLAAGARGERRALPNARV 190

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+DI   A++I+K++ RLN+IY K+ G+  +++E+ ++RD  M   EA
Sbjct: 191 MIHQPSGGAQGQATDIAIQAKEILKLRDRLNKIYQKHTGQEIDKIEQCMERDLFMDPEEA 250

Query: 196 CDWGVVDKVLMSR 208
            DWG++D+V+ +R
Sbjct: 251 RDWGLIDEVIENR 263


>gi|125540417|gb|EAY86812.1| hypothetical protein OsI_08189 [Oryza sativa Indica Group]
          Length = 318

 Score =  261 bits (668), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 118/193 (61%), Positives = 158/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
            GLVPMV+E T+RGER+YDI+SRLLKERIV + G I D  A+L+ AQLLFLE+ENP K +
Sbjct: 71  FGLVPMVIETTSRGERAYDIFSRLLKERIVLIHGPIADETASLVVAQLLFLESENPLKPV 130

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVTAG+AIYDTMQ+I+ P++T C+GQAASMGSLLL+AG +G R ALPNAR+
Sbjct: 131 HLYINSPGGVVTAGLAIYDTMQYIRCPVTTLCIGQAASMGSLLLAAGARGERRALPNARV 190

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+DI   A++I+K++ RLN+IY K+ G+  +++E+ ++RD  M   EA
Sbjct: 191 MIHQPSGGAQGQATDIAIQAKEILKLRDRLNKIYQKHTGQEIDKIEQCMERDLFMDPEEA 250

Query: 196 CDWGVVDKVLMSR 208
            DWG++D+V+ +R
Sbjct: 251 RDWGLIDEVIENR 263


>gi|134300401|ref|YP_001113897.1| ATP-dependent Clp protease proteolytic subunit [Desulfotomaculum
           reducens MI-1]
 gi|172044337|sp|A4J7L9|CLPP_DESRM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|134053101|gb|ABO51072.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Desulfotomaculum reducens MI-1]
          Length = 195

 Score =  261 bits (668), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 118/192 (61%), Positives = 157/192 (81%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVP+VVEQTNRGER+YDIYSRLLK+RI+F+ G I+DH+A L+ AQ LFLEAE+P+K+I 
Sbjct: 3   GLVPIVVEQTNRGERAYDIYSRLLKDRIIFIGGPIDDHIANLVIAQFLFLEAEDPEKDIH 62

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGVVTAG+AIYDTMQ+IKP +ST C+GQAASMGS LL+AG  G R+ALP ARI+
Sbjct: 63  LYINSPGGVVTAGLAIYDTMQYIKPAVSTICLGQAASMGSFLLAAGAPGKRYALPMARIM 122

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA+DI+ HA++I+++K  LN+    + G+  E++ +  +RD+ MSA EA 
Sbjct: 123 IHQPLGGVQGQATDIDIHAKEILRMKDLLNDRLAHHTGQPLEQITRDTERDYFMSAEEAK 182

Query: 197 DWGVVDKVLMSR 208
            +G++D+V+  R
Sbjct: 183 KYGLIDEVMPYR 194


>gi|167562414|ref|ZP_02355330.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           oklahomensis EO147]
 gi|167569597|ref|ZP_02362471.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           oklahomensis C6786]
          Length = 207

 Score =  261 bits (668), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 121/202 (59%), Positives = 157/202 (77%)

Query: 7   AKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
           A +D E   LGLVP+VVE + RGERSYDIYSRLLKERIVF+ G++ D  A L+ AQLLFL
Sbjct: 5   APRDFEAQALGLVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFL 64

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E+ENP K+ISLYINSPGG V+AGMAIYDTMQF+KP +ST CMG AASMG+ LL++G KG 
Sbjct: 65  ESENPDKDISLYINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGK 124

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           R+ALPNAR+++HQP GG  GQASDIE  A++I+ +K RLN +  ++ G+  E + +  DR
Sbjct: 125 RYALPNARVMIHQPLGGARGQASDIEIQAREILYLKDRLNHLLAQHTGQDVERIARDTDR 184

Query: 187 DHIMSASEACDWGVVDKVLMSR 208
           D+ MS+ +A  +G++D V + R
Sbjct: 185 DNFMSSEDAKAYGLIDHVSIKR 206


>gi|94987236|ref|YP_595169.1| protease subunit of ATP-dependent Clp proteases [Lawsonia
           intracellularis PHE/MN1-00]
 gi|116243147|sp|Q1MQ79|CLPP_LAWIP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|94731485|emb|CAJ54848.1| Protease subunit of ATP-dependent Clp proteases [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 209

 Score =  261 bits (668), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 114/201 (56%), Positives = 167/201 (83%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           +D+F   VP+VVE   R ER+YDIYSRLLK+RIV +  ++ D +A+LICAQLLFLE+++P
Sbjct: 2   DDIFNMTVPIVVENNGRNERAYDIYSRLLKDRIVLLGTEVNDQVASLICAQLLFLESQDP 61

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +KEI LYINSPGG VTAG+AIYDTM +I P ++T CMG+AASMG+LLL+AGEK MR+ALP
Sbjct: 62  EKEIYLYINSPGGSVTAGLAIYDTMNYITPNVATVCMGRAASMGALLLAAGEKNMRYALP 121

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+++++HQP GG+ GQA+DI+ HA++I+++++RLNEI ++  G++ E+V +  +RD+ M+
Sbjct: 122 NSQVMIHQPLGGYQGQATDIDIHAREILRMRQRLNEILMEQTGQSLEKVAQDTERDYFMT 181

Query: 192 ASEACDWGVVDKVLMSRIDIE 212
           A +A  +G++DKVL+SR D++
Sbjct: 182 AEDAKAYGLIDKVLVSRKDLD 202


>gi|148652118|ref|YP_001279211.1| ATP-dependent Clp protease proteolytic subunit [Psychrobacter sp.
           PRwf-1]
 gi|148571202|gb|ABQ93261.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Psychrobacter
           sp. PRwf-1]
          Length = 240

 Score =  261 bits (668), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 118/192 (61%), Positives = 159/192 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQ+ RGERS+DIYSRLL+ER++F+TGQ+ED+MA LI AQ+LFLEAENP+K+I 
Sbjct: 44  ALVPMVVEQSARGERSFDIYSRLLRERVIFLTGQVEDNMANLIVAQMLFLEAENPEKDIH 103

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG V+AG+A++DTM FIKP +ST CMG A SMGS LL+AG+KG R+AL N+R++
Sbjct: 104 LYINSPGGSVSAGLAMFDTMNFIKPDVSTICMGGAYSMGSFLLAAGQKGKRYALANSRVM 163

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  GQA+DIE +A++I+KI+ RLN I  +  G+  E++E+ ++RD+ + A EA 
Sbjct: 164 IHQPSGGAQGQATDIEINAREILKIRDRLNRILAERTGQPLEKIERDVERDYWLDAQEAK 223

Query: 197 DWGVVDKVLMSR 208
            +G+VD+VL  R
Sbjct: 224 AYGLVDEVLERR 235


>gi|115311358|sp|Q2SK36|CLPP_HAHCH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
          Length = 204

 Score =  261 bits (668), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 121/194 (62%), Positives = 153/194 (78%), Gaps = 1/194 (0%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQT RGERSYDIYSRLLKERI+F+ GQ+EDHMA L+ AQLLFLE+ENP K+I 
Sbjct: 9   ALVPMVVEQTARGERSYDIYSRLLKERIIFLVGQVEDHMANLVVAQLLFLESENPDKDIH 68

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAG++IYDTMQFIKP +ST C+GQAASMG+LLLS G  G R+ LP++R++
Sbjct: 69  LYINSPGGSVTAGLSIYDTMQFIKPDVSTMCIGQAASMGALLLSGGAAGKRYCLPHSRVM 128

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP  GG  GQASDIE HA++I+ ++ +LN I  K+ G+  E + +  DRD  M A  A
Sbjct: 129 IHQPLLGGLQGQASDIEIHAKEILLLREKLNNILSKHTGQDIETIARDTDRDKFMDAEMA 188

Query: 196 CDWGVVDKVLMSRI 209
            ++G++D VL  R+
Sbjct: 189 KNYGLIDSVLDKRV 202


>gi|294340353|emb|CAZ88734.1| ATP-dependent Clp protease proteolytic subunit precursor
           (Endopeptidase Clp) (Caseinolytic protease) (Protease
           Ti) (Heat shock protein F21.5) [Thiomonas sp. 3As]
          Length = 202

 Score =  261 bits (668), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 118/193 (61%), Positives = 155/193 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LGLVPMV+EQ+ RGER+YDIYSRLL+ER++F+ G I D MA L+ AQLLFLE+ENP K+I
Sbjct: 9   LGLVPMVIEQSGRGERAYDIYSRLLRERVIFLVGPINDQMANLVVAQLLFLESENPDKDI 68

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG V+AGMAI+DTMQFIKP +ST C G AASMG+ L++AG KG R++LPN+RI
Sbjct: 69  SLYINSPGGSVSAGMAIFDTMQFIKPDVSTLCTGIAASMGAFLMAAGAKGKRYSLPNSRI 128

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+DIE  A++I+ ++ RLN I  +  G+T E++    +RD  MSA EA
Sbjct: 129 MIHQPSGGAQGQATDIEIQAREILYLRERLNGILAERTGQTLEKIGIDTERDFFMSADEA 188

Query: 196 CDWGVVDKVLMSR 208
            D+G++D+V+  R
Sbjct: 189 KDYGLIDEVISKR 201


>gi|317153552|ref|YP_004121600.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316943803|gb|ADU62854.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 202

 Score =  261 bits (668), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 115/198 (58%), Positives = 160/198 (80%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +PMV+E T R ER+YDIYSRLLK+RI+ ++  I+DH+A+LICAQLLFLE+E+P+KEI +Y
Sbjct: 4   IPMVIETTGRTERAYDIYSRLLKDRIILLSSAIDDHVASLICAQLLFLESEDPEKEIYMY 63

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGVV+AGMAIYDTMQ+I  P+ST C+GQAASMG+LLL+AG +GMR+ALP++RI++H
Sbjct: 64  INSPGGVVSAGMAIYDTMQYISAPVSTLCLGQAASMGALLLAAGAQGMRYALPHSRIMIH 123

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQASDI  HA++I++++  LN I   + G+  +++    +RD+ MS+ EA  +
Sbjct: 124 QPLGGTQGQASDIHIHAKEILRLRDELNGILAGHTGQKLDKIRDDTERDYFMSSEEAVKY 183

Query: 199 GVVDKVLMSRIDIEEKSK 216
           G++DKV+ SR D +E  K
Sbjct: 184 GLIDKVMHSRADAQEGRK 201


>gi|258404644|ref|YP_003197386.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Desulfohalobium retbaense DSM 5692]
 gi|257796871|gb|ACV67808.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Desulfohalobium retbaense DSM 5692]
          Length = 197

 Score =  261 bits (667), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 116/190 (61%), Positives = 156/190 (82%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP+V+E T RGER+YDIYSRLLK+RI+ +   I+D++A LICAQLLFLE+ENP KEI+ Y
Sbjct: 3   VPIVIESTGRGERAYDIYSRLLKDRIILLGTPIDDNVANLICAQLLFLESENPDKEINFY 62

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VT+G+AIYDTMQ+I  P++T C+GQAASMG++LL+AGE GMR+ALP+ RI+LH
Sbjct: 63  INSPGGSVTSGLAIYDTMQYISAPVATLCLGQAASMGAVLLAAGEPGMRYALPHGRIMLH 122

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GGF GQA+DI+  A++I+++K  LN I  ++ G   E++E+  DRD+ M A+EA D+
Sbjct: 123 QPMGGFQGQATDIDIQAREILRLKSSLNSILSRHTGVELEKMERDTDRDYFMGATEAADY 182

Query: 199 GVVDKVLMSR 208
           GV+D+VL SR
Sbjct: 183 GVIDQVLASR 192


>gi|311107153|ref|YP_003980006.1| ATP-dependent Clp protease proteolytic subunit ClpP [Achromobacter
           xylosoxidans A8]
 gi|310761842|gb|ADP17291.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Achromobacter
           xylosoxidans A8]
          Length = 217

 Score =  261 bits (667), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 117/193 (60%), Positives = 153/193 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG +PMV+EQ+ RGER+YDIYSRLL+ER++F+ G + D  A L+ AQLLFLE+ENP K+I
Sbjct: 22  LGYIPMVIEQSGRGERAYDIYSRLLRERLIFLVGPVNDATANLVVAQLLFLESENPDKDI 81

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG V AGMAI+DTMQF+KP +ST C G AASMG+ LL+AG+KG RF LPN+RI
Sbjct: 82  SLYINSPGGSVYAGMAIFDTMQFVKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRI 141

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQASDI+  A++I+ ++ RLN I  +N G+T E +    +RD+ MSA +A
Sbjct: 142 MIHQPSGGAQGQASDIQIQAREILDLRERLNRILAENTGQTMERIGIDTERDNFMSAEDA 201

Query: 196 CDWGVVDKVLMSR 208
             +G+VDKV+ SR
Sbjct: 202 VSYGLVDKVMTSR 214


>gi|296136117|ref|YP_003643359.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thiomonas
           intermedia K12]
 gi|295796239|gb|ADG31029.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thiomonas
           intermedia K12]
          Length = 202

 Score =  261 bits (667), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 118/193 (61%), Positives = 155/193 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LGLVPMV+EQ+ RGER+YDIYSRLL+ER++F+ G I D MA L+ AQLLFLE+ENP K+I
Sbjct: 9   LGLVPMVIEQSGRGERAYDIYSRLLRERVIFLVGPINDQMANLVVAQLLFLESENPDKDI 68

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG V+AGMAI+DTMQFIKP +ST C G AASMG+ L++AG KG R++LPN+RI
Sbjct: 69  SLYINSPGGSVSAGMAIFDTMQFIKPDVSTLCTGIAASMGAFLMAAGAKGKRYSLPNSRI 128

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+DIE  A++I+ ++ RLN I  +  G+T E++    +RD  MSA EA
Sbjct: 129 MIHQPSGGAQGQATDIEIQAREILYLRERLNGILAERTGQTLEKIGIDTERDFFMSAEEA 188

Query: 196 CDWGVVDKVLMSR 208
            D+G++D+V+  R
Sbjct: 189 KDYGLIDEVISKR 201


>gi|253575671|ref|ZP_04853007.1| clp protease [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251845009|gb|EES73021.1| clp protease [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 196

 Score =  261 bits (667), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 118/190 (62%), Positives = 155/190 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQTNRGERSYDIYSRLLK+RI+F++  I+D +A L+ AQLLFL AE+P+K+I
Sbjct: 1   MSLVPMVVEQTNRGERSYDIYSRLLKDRIIFLSNAIDDEVANLVIAQLLFLAAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGM IYDTMQ+IKP +ST C+G AASMGSLLL+AG  G R+ALPN+ +
Sbjct: 61  HLYINSPGGSVTAGMGIYDTMQYIKPDVSTICVGMAASMGSLLLTAGAPGKRYALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+ HA  I+K +++LN+IYV+  G+  E++E+  DRD  MSA EA
Sbjct: 121 MIHQPLGGVRGQATDIKIHADWIIKTRQKLNQIYVERTGQPLEKIERDTDRDFFMSAEEA 180

Query: 196 CDWGVVDKVL 205
             +G++D+V+
Sbjct: 181 KAYGIIDQVI 190


>gi|52425902|ref|YP_089039.1| ATP-dependent Clp protease proteolytic subunit [Mannheimia
           succiniciproducens MBEL55E]
 gi|60389529|sp|Q65RF6|CLPP_MANSM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|52307954|gb|AAU38454.1| ClpP protein [Mannheimia succiniciproducens MBEL55E]
          Length = 193

 Score =  261 bits (667), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 123/193 (63%), Positives = 161/193 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+PMVVEQT+RGERSYDIYSRLLKER++F++G++ED+MA LI AQLLFLE+ENP+K+I
Sbjct: 1   MALIPMVVEQTSRGERSYDIYSRLLKERVIFLSGEVEDNMANLIVAQLLFLESENPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGG VTAGMAIYDTMQFIKP + T C+GQA SMG+ LL+ G  G R ALP+AR+
Sbjct: 61  NLYINSPGGSVTAGMAIYDTMQFIKPDVRTLCVGQACSMGAFLLAGGAAGKRAALPHARV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQASDI+ HAQ+I+KIK+ LNE    + G+ +E +E+  DRD+ MSA +A
Sbjct: 121 MIHQPLGGFRGQASDIQIHAQEILKIKQTLNERLAFHTGQPFEVIERDTDRDNFMSAEDA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++D VL+ R
Sbjct: 181 KNYGLIDSVLVKR 193


>gi|323703643|ref|ZP_08115286.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Desulfotomaculum nigrificans DSM 574]
 gi|323531415|gb|EGB21311.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Desulfotomaculum nigrificans DSM 574]
          Length = 195

 Score =  261 bits (667), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 118/192 (61%), Positives = 156/192 (81%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVP+VVEQTNRGER+YDIYSRLLK+RI+F+ G I+DH+A L+ AQ LFLEAE+P+K+I 
Sbjct: 3   ALVPIVVEQTNRGERAYDIYSRLLKDRIIFIGGPIDDHIANLVIAQFLFLEAEDPEKDIH 62

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGVVTAG+AIYDTMQ+IKP +ST C+GQAASMGS LL+AG KG R+ALP ARI+
Sbjct: 63  LYINSPGGVVTAGLAIYDTMQYIKPAVSTICLGQAASMGSFLLAAGAKGKRYALPQARIM 122

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA+DI+ HA++I++++  LNE    + G+  E++ +  +RD  MSA EA 
Sbjct: 123 IHQPLGGVQGQATDIDIHAREILRMREILNERLSHHTGQPLEKIARDTERDFFMSAEEAK 182

Query: 197 DWGVVDKVLMSR 208
            +G++D+V+  R
Sbjct: 183 KYGIIDEVMPYR 194


>gi|225713510|gb|ACO12601.1| ATP-dependent Clp protease proteolytic subunit, mitochondrial
           precursor [Lepeophtheirus salmonis]
          Length = 222

 Score =  261 bits (667), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 121/189 (64%), Positives = 160/189 (84%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVP+VVEQT RGERSYDIYSRLLK+RI+ + GQ++D ++ L+ AQLLFL+AE+ +K I 
Sbjct: 24  GLVPIVVEQTGRGERSYDIYSRLLKDRIICLMGQVDDVISGLMVAQLLFLQAESGKKPIH 83

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VTAG+AIYDTMQ+I+PPI+T+C+GQA SMGSLLL+AG KGMR +LPN+RI+
Sbjct: 84  MYINSPGGSVTAGLAIYDTMQYIQPPIATWCVGQACSMGSLLLTAGTKGMRHSLPNSRIM 143

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSG   GQASDI+  AQ+I+ ++ RLN IYVK+ G+  + VEK++DRD+ MSA +A 
Sbjct: 144 VHQPSGQSHGQASDIQIQAQEILNLRARLNNIYVKHTGQPLDIVEKSMDRDNFMSADDAL 203

Query: 197 DWGVVDKVL 205
            +G++DKVL
Sbjct: 204 KFGLIDKVL 212


>gi|255528525|ref|ZP_05395307.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           carboxidivorans P7]
 gi|296184877|ref|ZP_06853288.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           carboxidivorans P7]
 gi|255507783|gb|EET84241.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           carboxidivorans P7]
 gi|296050659|gb|EFG90082.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           carboxidivorans P7]
          Length = 194

 Score =  261 bits (667), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 118/193 (61%), Positives = 157/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQTNRGERSYDIYSRLLK+R+V +T ++ D  A+L+ AQLLFLEAE+P K+I
Sbjct: 1   MSLVPVVVEQTNRGERSYDIYSRLLKDRVVMLTEEVNDVTASLVVAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +TAGMAIYDTMQ+IKP +ST C+G AASMG+ LL+AG KG R ALPNA I
Sbjct: 61  YLYINSPGGSITAGMAIYDTMQYIKPDVSTICIGMAASMGAFLLNAGAKGKRVALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DI  HA+ I+KIK++LN I+ +  G+  E +EK  +RD+ MSA EA
Sbjct: 121 MIHQPLGGFQGQATDIGIHAERILKIKKKLNTIFSERTGQPLETIEKDTERDNFMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++D++++ +
Sbjct: 181 KEYGLIDEIMVKK 193


>gi|251791978|ref|YP_003006698.1| ATP-dependent Clp protease proteolytic subunit [Aggregatibacter
           aphrophilus NJ8700]
 gi|247533365|gb|ACS96611.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Aggregatibacter aphrophilus NJ8700]
          Length = 193

 Score =  261 bits (667), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 119/193 (61%), Positives = 156/193 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++PMVV+QT+RGER+YDIYSRLLK+R++F++G++ED+MA LI AQLLFLE+E+P K+I
Sbjct: 1   MSVIPMVVDQTSRGERAYDIYSRLLKDRVIFLSGEVEDNMANLIVAQLLFLESEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGG VTAGMAIYDTMQFIKP + T C+GQA SMG+ LL+ G  G R  LP+AR+
Sbjct: 61  NLYINSPGGSVTAGMAIYDTMQFIKPDVRTLCVGQACSMGAFLLAGGAPGKRGVLPHARV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQASDI+ HAQ+I+KIK  LNE    + G+  E +EK  DRD+ MSA EA
Sbjct: 121 MIHQPLGGFRGQASDIQIHAQEILKIKSTLNERLAFHTGQPIETIEKDTDRDNFMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD+V   R
Sbjct: 181 QNYGLVDEVFTKR 193


>gi|239907453|ref|YP_002954194.1| ATP-dependent Clp protease proteolytic subunit [Desulfovibrio
           magneticus RS-1]
 gi|259585949|sp|C4XH03|CLPP_DESMR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|239797319|dbj|BAH76308.1| ATP-dependent Clp protease proteolytic subunit [Desulfovibrio
           magneticus RS-1]
          Length = 202

 Score =  261 bits (667), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 114/199 (57%), Positives = 161/199 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P+V+E T R ER+YDIYSRLL++RI+ +   ++D++A LICAQLLFLE+E+P+KEI
Sbjct: 1   MATIPIVIETTGRTERAYDIYSRLLRDRIILLGSAVDDYVANLICAQLLFLESEDPEKEI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVV+AG+AIYDTMQ++ PP+ST C+GQAASMG+LLL AG  GMR+ALP++RI
Sbjct: 61  FMYINSPGGVVSAGLAIYDTMQYVMPPVSTLCLGQAASMGALLLCAGATGMRYALPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG+ GQA+DIE HA++  + +  LNEI  K+ G++ E ++   +RD+ MSA EA
Sbjct: 121 MIHQPSGGYQGQATDIEIHAKETRRTRETLNEIMAKHTGQSMERIQVDTERDNFMSAEEA 180

Query: 196 CDWGVVDKVLMSRIDIEEK 214
             +G++DKVL SR  +E+K
Sbjct: 181 VAYGLIDKVLTSRERLEKK 199


>gi|91783520|ref|YP_558726.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           xenovorans LB400]
 gi|187923896|ref|YP_001895538.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           phytofirmans PsJN]
 gi|296157827|ref|ZP_06840661.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           sp. Ch1-1]
 gi|116243110|sp|Q13Z15|CLPP2_BURXL RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|91687474|gb|ABE30674.1| ATP-dependent Clp protease proteolytic subunit ClpP [Burkholderia
           xenovorans LB400]
 gi|187715090|gb|ACD16314.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           phytofirmans PsJN]
 gi|295892073|gb|EFG71857.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           sp. Ch1-1]
          Length = 217

 Score =  261 bits (666), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 121/202 (59%), Positives = 154/202 (76%)

Query: 7   AKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
           + +D E   LGLVP+VVE + RGERSYDIYSRLLKERIVF+ G++ D  A L+ AQ+LFL
Sbjct: 15  SSRDLEAQALGLVPIVVETSGRGERSYDIYSRLLKERIVFLVGEVNDQTANLVVAQMLFL 74

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E+ENP K+IS YINSPGG V+AGMAIYDTMQFIKP +ST CMG AASMG+ LL+AG KG 
Sbjct: 75  ESENPDKDISFYINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLAAGAKGK 134

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           RFALPN+R+++HQP GG  GQASDIE  A++I+ +K RLN +   + G+  E + +  DR
Sbjct: 135 RFALPNSRVMIHQPLGGARGQASDIEIQAREILYLKERLNHLLAHHTGQPVERIARDTDR 194

Query: 187 DHIMSASEACDWGVVDKVLMSR 208
           D+ MS  +A  +G+VD+V   R
Sbjct: 195 DNFMSGDDAQAYGLVDQVAHKR 216


>gi|147677139|ref|YP_001211354.1| protease subunit of ATP-dependent Clp proteases [Pelotomaculum
           thermopropionicum SI]
 gi|259585961|sp|A5D447|CLPP_PELTS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|146273236|dbj|BAF58985.1| protease subunit of ATP-dependent Clp proteases [Pelotomaculum
           thermopropionicum SI]
          Length = 194

 Score =  261 bits (666), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 116/189 (61%), Positives = 159/189 (84%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQTNRGER+YDIYSRLLK+RI+F+ G I+D+ A LI AQ+LFLEAE+P+K+I
Sbjct: 1   MNLVPIVVEQTNRGERAYDIYSRLLKDRIIFLGGPIDDNTANLIIAQMLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGGVVTAGMAIYDTMQ+++ P++T C+GQAASM SLLL+AG KG R++LP ARI
Sbjct: 61  QFYINSPGGVVTAGMAIYDTMQYVRSPVATICIGQAASMASLLLAAGAKGKRYSLPYARI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQP GG  GQA+DIE HA++I+++++ LNEI  ++ G+  E++ +  +RD+ MSA EA
Sbjct: 121 LIHQPLGGVQGQATDIEIHAKEILRMRQFLNEILSRHTGQPIEKIARDTERDYFMSAQEA 180

Query: 196 CDWGVVDKV 204
            ++G++D+V
Sbjct: 181 KEYGIIDEV 189


>gi|169824905|ref|YP_001692516.1| ATP-dependent protease Clp proteolytic subunit [Finegoldia magna
           ATCC 29328]
 gi|297587291|ref|ZP_06945936.1| ATP-dependent Clp protease proteolytic subunit [Finegoldia magna
           ATCC 53516]
 gi|302379561|ref|ZP_07268046.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Finegoldia
           magna ACS-171-V-Col3]
 gi|303234189|ref|ZP_07320835.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Finegoldia
           magna BVS033A4]
 gi|167831710|dbj|BAG08626.1| ATP-dependent protease Clp proteolytic subunit [Finegoldia magna
           ATCC 29328]
 gi|297575272|gb|EFH93991.1| ATP-dependent Clp protease proteolytic subunit [Finegoldia magna
           ATCC 53516]
 gi|302312468|gb|EFK94464.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Finegoldia
           magna ACS-171-V-Col3]
 gi|302494730|gb|EFL54490.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Finegoldia
           magna BVS033A4]
          Length = 195

 Score =  261 bits (666), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 117/190 (61%), Positives = 158/190 (83%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQ+NRGERSYDI+SRLLKERI+FVTG++ D MA L+ AQLLFLE+E+P+K+I L
Sbjct: 4   LVPMVVEQSNRGERSYDIFSRLLKERIIFVTGEVNDQMADLVIAQLLFLESEDPKKDIQL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG+AIYDTMQ++KP +ST C+G AASMG++LL++G KG R+ALPNA  L+
Sbjct: 64  YINSPGGSVSAGLAIYDTMQYVKPDVSTICVGMAASMGAILLTSGAKGKRYALPNADTLI 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE HA++I+K +  LN+I  +  G+  E++E+  DRD I++A EA +
Sbjct: 124 HQPLGGAQGQASDIEIHAKNILKKRELLNKILSERTGQPLEKIERDTDRDFILTAEEAKE 183

Query: 198 WGVVDKVLMS 207
           +G++D+V+ +
Sbjct: 184 YGLIDEVIYT 193


>gi|319763664|ref|YP_004127601.1| ATP-dependent clp protease, proteolytic subunit clpp
           [Alicycliphilus denitrificans BC]
 gi|330824071|ref|YP_004387374.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Alicycliphilus denitrificans K601]
 gi|317118225|gb|ADV00714.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Alicycliphilus denitrificans BC]
 gi|329309443|gb|AEB83858.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Alicycliphilus denitrificans K601]
          Length = 202

 Score =  261 bits (666), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 117/193 (60%), Positives = 155/193 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG++PMV+EQ+ RGERSYDIYSRLLKER++F+ G++ D  A L+ AQLLFLE+ENP K+I
Sbjct: 9   LGMIPMVIEQSGRGERSYDIYSRLLKERVIFLVGEVNDQTANLVVAQLLFLESENPDKDI 68

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S YINSPGG VTAGMAIYDTMQFIKP +ST C G AASMG+ LL+AG KG RF+LPN++I
Sbjct: 69  SFYINSPGGSVTAGMAIYDTMQFIKPDVSTLCCGFAASMGAFLLAAGAKGKRFSLPNSKI 128

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQ  GG  GQA+DIE HA+DI++ K ++N I  +  G++ E+V+   +RD+ M+A EA
Sbjct: 129 MIHQVLGGARGQATDIEIHARDILRTKDQMNRILAERTGQSIEKVKADTERDYFMTADEA 188

Query: 196 CDWGVVDKVLMSR 208
            D+G+VD+V+  R
Sbjct: 189 RDYGLVDQVISKR 201


>gi|302035647|ref|YP_003795969.1| ATP-dependent Clp protease proteolytic subunit clpP [Candidatus
           Nitrospira defluvii]
 gi|300603711|emb|CBK40042.1| ATP-dependent Clp protease, proteolytic subunit clpP [Candidatus
           Nitrospira defluvii]
          Length = 211

 Score =  261 bits (666), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 115/188 (61%), Positives = 158/188 (84%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+V+EQTNRGER+YDIYSRLLK+RI+F+   I+D  A LI AQLLFLEAE+P+K+I+L
Sbjct: 2   LVPIVIEQTNRGERAYDIYSRLLKDRIIFLGAPIDDVFANLIIAQLLFLEAEDPEKDINL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+ IYDTMQ++KP I+T C+GQAASMG+ LL+AG KG R+ALPNAR+++
Sbjct: 62  YINSPGGSVTAGLGIYDTMQYVKPAINTICLGQAASMGAFLLTAGTKGKRYALPNARVMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQA++I+ HA++I+KI+ RLNEI  K+ G+  +++ +  +RD+ MS+ EA  
Sbjct: 122 HQPMGGFQGQATEIDIHAREILKIRERLNEIMAKHTGQPLDKISQDTERDYFMSSEEAKR 181

Query: 198 WGVVDKVL 205
           +G++D+V+
Sbjct: 182 YGLIDEVI 189


>gi|257138854|ref|ZP_05587116.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           thailandensis E264]
          Length = 217

 Score =  260 bits (665), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 121/202 (59%), Positives = 155/202 (76%)

Query: 7   AKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
           A +D E   LGLVP+VVE + RGERSYDIYSRLLKERIVF+ G++ D  A L+ AQLLFL
Sbjct: 15  APRDFEAQALGLVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFL 74

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E+ENP K+ISLYINSPGG V+AGMAIYDTMQF+KP +ST CMG AASMG+ LL++G KG 
Sbjct: 75  ESENPDKDISLYINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGK 134

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           R+ALPNAR+++HQP GG  GQASDIE  A++I+ +K RLN +   + G+  E + +  DR
Sbjct: 135 RYALPNARVMIHQPLGGARGQASDIEIQAREILYLKDRLNHLLAHHTGQDVERIARDTDR 194

Query: 187 DHIMSASEACDWGVVDKVLMSR 208
           D+ MS+ +A  +G++D V   R
Sbjct: 195 DNFMSSEDAKAYGLIDHVSTKR 216


>gi|227824397|ref|ZP_03989229.1| ATP-dependent Clp protease [Acidaminococcus sp. D21]
 gi|226904896|gb|EEH90814.1| ATP-dependent Clp protease [Acidaminococcus sp. D21]
          Length = 199

 Score =  260 bits (665), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 115/191 (60%), Positives = 158/191 (82%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP+VVEQT++GERSYDIYSRLLK+RI+FVTG+IEDHMA LI AQLLFLE+E+P K+I LY
Sbjct: 7   VPIVVEQTSKGERSYDIYSRLLKDRIIFVTGEIEDHMANLIVAQLLFLESEDPDKDIHLY 66

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG V+AG+AIYDTMQ+I+P +ST C+G AASM S+LL+AG KG RFALP++R+++H
Sbjct: 67  INSPGGSVSAGLAIYDTMQYIRPDVSTICVGMAASMASILLAAGAKGKRFALPHSRVMIH 126

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA+DIE HA++I++++  +N+I   + GK  E ++   +RDH ++A EA  +
Sbjct: 127 QPLGGAQGQATDIEIHAREILRVREEMNQILAAHTGKDPETIKLDTERDHYLTADEALSY 186

Query: 199 GVVDKVLMSRI 209
           G++D+V+ S +
Sbjct: 187 GLIDQVVASPV 197


>gi|226311381|ref|YP_002771275.1| ATP-dependent Clp protease proteolytic subunit [Brevibacillus
           brevis NBRC 100599]
 gi|226094329|dbj|BAH42771.1| ATP-dependent Clp protease proteolytic subunit [Brevibacillus
           brevis NBRC 100599]
          Length = 193

 Score =  260 bits (665), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 120/188 (63%), Positives = 152/188 (80%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+PMV+EQT+RGERSYDIYSRLLK+RI+ +  +I+D +A LI AQLLFL+AE+P K+ISL
Sbjct: 2   LIPMVIEQTSRGERSYDIYSRLLKDRIILLGTEIDDEIANLIVAQLLFLQAEDPDKDISL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGMAIYDTMQ+IKP +ST C+G AASMG+ LL+AG KG RFALPNA +++
Sbjct: 62  YINSPGGSVTAGMAIYDTMQYIKPDVSTICVGMAASMGAFLLAAGAKGKRFALPNAEVMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA DI  HA+ I+K KR+LNEI  +  G+ YE VE+  DRD+ MSA EA  
Sbjct: 122 HQPLGGVRGQAEDIRIHAEWIMKTKRQLNEILSERTGQPYERVEQDTDRDNFMSAEEAKA 181

Query: 198 WGVVDKVL 205
           +G++D ++
Sbjct: 182 YGLIDSII 189


>gi|157273309|gb|ABV27208.1| ATP-dependent Clp protease proteolytic subunit ClpP [Candidatus
           Chloracidobacterium thermophilum]
          Length = 199

 Score =  260 bits (665), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 117/193 (60%), Positives = 160/193 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            L+PMV+EQT RGER+YDIYSRLLK+ I+F++  I+D +A+L+ AQLLFLE+E+P+++IS
Sbjct: 7   ALIPMVIEQTGRGERAYDIYSRLLKDNIIFISTPIDDTVASLVVAQLLFLESEDPERDIS 66

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VTAGMAIYDTMQF+KP I TFC+GQ ASMG+LLL+AG KG R+ALP++RIL
Sbjct: 67  IYINSPGGSVTAGMAIYDTMQFVKPDIVTFCVGQCASMGALLLAAGTKGKRYALPHSRIL 126

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  GQA+DI   A++I +I+   + I  K+ GK +E +E  ++RD IMSA++A 
Sbjct: 127 IHQPSGGAQGQATDILIQAEEIKRIRELTSTILAKHTGKPFEVIEADVERDRIMSATQAM 186

Query: 197 DWGVVDKVLMSRI 209
           ++G+VD+VL SR+
Sbjct: 187 EYGIVDQVLTSRV 199


>gi|83718816|ref|YP_442643.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           thailandensis E264]
 gi|167581577|ref|ZP_02374451.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           thailandensis TXDOH]
 gi|167619693|ref|ZP_02388324.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           thailandensis Bt4]
 gi|167836265|ref|ZP_02463148.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           thailandensis MSMB43]
 gi|110816456|sp|Q2SWQ6|CLPP_BURTA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|83652641|gb|ABC36704.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           thailandensis E264]
          Length = 207

 Score =  260 bits (665), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 121/202 (59%), Positives = 155/202 (76%)

Query: 7   AKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
           A +D E   LGLVP+VVE + RGERSYDIYSRLLKERIVF+ G++ D  A L+ AQLLFL
Sbjct: 5   APRDFEAQALGLVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFL 64

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E+ENP K+ISLYINSPGG V+AGMAIYDTMQF+KP +ST CMG AASMG+ LL++G KG 
Sbjct: 65  ESENPDKDISLYINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGK 124

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           R+ALPNAR+++HQP GG  GQASDIE  A++I+ +K RLN +   + G+  E + +  DR
Sbjct: 125 RYALPNARVMIHQPLGGARGQASDIEIQAREILYLKDRLNHLLAHHTGQDVERIARDTDR 184

Query: 187 DHIMSASEACDWGVVDKVLMSR 208
           D+ MS+ +A  +G++D V   R
Sbjct: 185 DNFMSSEDAKAYGLIDHVSTKR 206


>gi|317405213|gb|EFV85552.1| ATP-dependent Clp protease proteolytic subunit [Achromobacter
           xylosoxidans C54]
          Length = 217

 Score =  260 bits (665), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 116/193 (60%), Positives = 152/193 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG +PMV+EQ+ RGER+YDIYSRLL+ER++F+ G + D  A L+ AQLLFLE+ENP K+I
Sbjct: 22  LGYIPMVIEQSGRGERAYDIYSRLLRERLIFLVGPVNDATANLVVAQLLFLESENPDKDI 81

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG V AGMAIYDTMQF+KP +ST C G AASMG+ LL+AG+KG RF LPN+RI
Sbjct: 82  SLYINSPGGSVYAGMAIYDTMQFVKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRI 141

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQASDI+  A++I+ ++ RLN I   N G++ + +    +RD+ MSA +A
Sbjct: 142 MIHQPSGGAQGQASDIQIQAREILDLRERLNRILADNTGQSIDRIALDTERDNFMSAEDA 201

Query: 196 CDWGVVDKVLMSR 208
             +G+VDKV+ SR
Sbjct: 202 VSYGLVDKVMTSR 214


>gi|257065888|ref|YP_003152144.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Anaerococcus
           prevotii DSM 20548]
 gi|256797768|gb|ACV28423.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Anaerococcus
           prevotii DSM 20548]
          Length = 197

 Score =  260 bits (664), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 115/191 (60%), Positives = 158/191 (82%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP VVEQTNRGER+YDIYSRLLK+RI+F++G++ D ++ +I AQLLFLE+E+P K+I  
Sbjct: 7   LVPTVVEQTNRGERAYDIYSRLLKDRIIFLSGEVRDEISDIIIAQLLFLESEDPDKDIQF 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G+AIYDTM +IKP +ST C+GQAASM ++LLS+G KG R++LP++ I++
Sbjct: 67  YINSPGGVVTSGLAIYDTMNYIKPDVSTICIGQAASMAAVLLSSGAKGKRYSLPSSNIMI 126

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQASDI   A+ I+KIK RLN+I   N G++ +++EK  DRD  M+A+EA +
Sbjct: 127 HQPSGGAQGQASDIVIQAEQIIKIKERLNKILSDNTGQSLKKIEKDTDRDFAMTAAEALE 186

Query: 198 WGVVDKVLMSR 208
           +G++DKV+ S+
Sbjct: 187 YGLIDKVIESK 197


>gi|95930403|ref|ZP_01313139.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Desulfuromonas acetoxidans DSM 684]
 gi|95133443|gb|EAT15106.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Desulfuromonas acetoxidans DSM 684]
          Length = 196

 Score =  260 bits (664), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 116/191 (60%), Positives = 155/191 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQT RGERSYDIYSRLLK+RI+F+ G I+D ++ L+ AQLLFLE+E+P+K+I
Sbjct: 1   MSLVPIVVEQTGRGERSYDIYSRLLKDRIIFLGGGIDDQISNLVIAQLLFLESEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVTAGMAIYDTMQ+IK P+ST C+GQAASMG++LL+AG +G RF LPN+RI
Sbjct: 61  HLYINSPGGVVTAGMAIYDTMQYIKAPVSTICVGQAASMGAVLLAAGAEGKRFTLPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQASDI  HAQ+I++++  LN I   +C +  E + +  +RD  M A +A
Sbjct: 121 MIHQPLGGFQGQASDISIHAQEILRLREDLNRILAHHCSQDIETIARDTERDFFMGAEDA 180

Query: 196 CDWGVVDKVLM 206
             +G++DK++M
Sbjct: 181 QKYGLIDKIVM 191


>gi|28211967|ref|NP_782911.1| ATP-dependent Clp protease proteolytic subunit [Clostridium tetani
           E88]
 gi|28204410|gb|AAO36848.1| ATP-dependent clp protease proteolytic subunit [Clostridium tetani
           E88]
          Length = 202

 Score =  260 bits (664), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 118/197 (59%), Positives = 158/197 (80%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E+ F+ LVP+VVEQTNRGERSYDIYSRLLK+RI+ ++ Q+ D  A+LI AQLLFLEAE+P
Sbjct: 5   EEKFMSLVPVVVEQTNRGERSYDIYSRLLKDRIIMLSDQVNDVTASLIVAQLLFLEAEDP 64

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+I LYINSPGG +T+GMAIYDTMQ+IKP +ST C+G AASMG+ LL+AG KG RFALP
Sbjct: 65  DKDIFLYINSPGGSITSGMAIYDTMQYIKPDVSTICIGMAASMGAFLLAAGAKGKRFALP 124

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+ I++HQP GGF GQA+DI  HA  I+KIK+ LN I  +  G+  E +++  +RD+ M 
Sbjct: 125 NSEIMIHQPLGGFQGQATDIGIHADRILKIKQNLNSILSEKTGQPLEVIQRDTERDNFMD 184

Query: 192 ASEACDWGVVDKVLMSR 208
           A++A D+G++D+V++ +
Sbjct: 185 ANQAKDYGLIDEVMVKK 201


>gi|195384926|ref|XP_002051163.1| GJ13731 [Drosophila virilis]
 gi|194147620|gb|EDW63318.1| GJ13731 [Drosophila virilis]
          Length = 254

 Score =  260 bits (664), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 119/200 (59%), Positives = 157/200 (78%)

Query: 6   CAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF 65
           C+ +      + L+PMVVEQT RGER+YDI+SRLLKERI+ + G I D +++ + AQLLF
Sbjct: 17  CSTQAPHVRGINLIPMVVEQTGRGERAYDIFSRLLKERIICLMGNITDDISSTVVAQLLF 76

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L++EN  K I LYINSPGGVVTAG+AIYDTMQ++KPPI+T+C+GQA SMGSLLL+AG  G
Sbjct: 77  LQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPIATWCVGQACSMGSLLLAAGAPG 136

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
           MR++LPNARI++HQPSGG  GQA+DI  HA++I+KIKR+L  IYVK+    Y+E+   ++
Sbjct: 137 MRYSLPNARIMIHQPSGGAQGQATDILIHAEEIIKIKRQLTNIYVKHAKNNYDEMCARME 196

Query: 186 RDHIMSASEACDWGVVDKVL 205
           RDH M+  EA   G++D VL
Sbjct: 197 RDHFMTPEEAKTLGIIDHVL 216


>gi|169831635|ref|YP_001717617.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638479|gb|ACA59985.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 198

 Score =  260 bits (664), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 118/191 (61%), Positives = 156/191 (81%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+VVEQT RGER+YDIYSRLLK+RIVF+ G IEDH+A LI AQLLFLEAE+P K+I L
Sbjct: 4   LVPIVVEQTARGERAYDIYSRLLKDRIVFIGGPIEDHVANLIIAQLLFLEAEDPDKDIHL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG+VT+GMAIYDTMQ+I+P +ST C+GQAAS G+ LL+AG  G RFALP ARI++
Sbjct: 64  YINSPGGLVTSGMAIYDTMQYIRPDVSTICLGQAASFGAFLLAAGTPGKRFALPYARIMM 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA++I+ HA++I++ KR LNE+  K+ G+  E++E+  +RD  MS  +A +
Sbjct: 124 HQPLGGVQGQATEIDIHAREILRTKRVLNELLAKHTGQPVEKIERDTERDFFMSPEQARE 183

Query: 198 WGVVDKVLMSR 208
           +G++D+V+  R
Sbjct: 184 YGIIDEVITVR 194


>gi|307252913|ref|ZP_07534801.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306859551|gb|EFM91576.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 190

 Score =  260 bits (664), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 119/187 (63%), Positives = 152/187 (81%)

Query: 22  VVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS 81
           +VEQT++GERSYDIYSRLLKERI+F+TGQ+EDHMA LI AQ+LFLEAE+P+K+I LYINS
Sbjct: 1   MVEQTSKGERSYDIYSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAEDPEKDIYLYINS 60

Query: 82  PGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
           PGGVVTAG+AIYDTM FIKP ++T C GQA SMG+ LLS G KG RFALPNAR+++HQP 
Sbjct: 61  PGGVVTAGLAIYDTMNFIKPDVATLCTGQACSMGAFLLSGGAKGKRFALPNARVMIHQPL 120

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
           GG  GQA+DI+  AQ+I+K+K  L     ++ G+ +E+V    +RD+ MSA EA ++G++
Sbjct: 121 GGARGQATDIQIQAQEILKLKEMLTRKMAEHSGQPFEKVAADTERDNFMSAVEAMEYGLI 180

Query: 202 DKVLMSR 208
           DKVL  R
Sbjct: 181 DKVLTHR 187


>gi|225850859|ref|YP_002731093.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Persephonella
           marina EX-H1]
 gi|225644930|gb|ACO03116.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Persephonella
           marina EX-H1]
          Length = 202

 Score =  260 bits (664), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 117/200 (58%), Positives = 163/200 (81%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           KD + +   LVP+V+EQT RGER+YDIYSRLLK+RI+ +   I+DH+A LI AQLLFLE+
Sbjct: 3   KDLDSIVSQLVPIVIEQTPRGERAYDIYSRLLKDRIIMLGFPIDDHIANLIIAQLLFLES 62

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           E+P+K+I +YINSPGGVVT+G+AIYDTM++IKP + T CMGQAASMG+ LLSAG KG R+
Sbjct: 63  EDPEKDIYMYINSPGGVVTSGLAIYDTMRYIKPDVVTICMGQAASMGAFLLSAGAKGKRY 122

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           ALP++RI++HQP GGF GQA+DIE HA++I+++K+ LNE   ++ G+  E++E+  +RD 
Sbjct: 123 ALPSSRIMIHQPLGGFQGQATDIEIHAKEILRLKKYLNERLAEHTGQPLEKIERDTERDF 182

Query: 189 IMSASEACDWGVVDKVLMSR 208
            MSA +A ++G++DKV+  R
Sbjct: 183 FMSAHDAVEYGLIDKVIEKR 202


>gi|114567171|ref|YP_754325.1| ATP-dependent Clp protease proteolytic subunit [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|122317850|sp|Q0AWF0|CLPP_SYNWW RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|114338106|gb|ABI68954.1| ATP-dependent Clp protease proteolytic subunit ClpP [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
          Length = 200

 Score =  260 bits (664), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 117/188 (62%), Positives = 155/188 (82%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQTNRGERSYDIYSRLLK+RI+F+   I+D +A L+ AQLLFLEAE+P K+ISL
Sbjct: 4   LVPMVVEQTNRGERSYDIYSRLLKDRIIFLGSGIDDTVANLVIAQLLFLEAEDPDKDISL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TAGMAIYDT+Q+I+P +ST C+G AASMG+ LL+AG+KG R+ALPNA I++
Sbjct: 64  YINSPGGSITAGMAIYDTLQYIRPDVSTICVGLAASMGAFLLAAGKKGKRYALPNAEIMI 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP+GG  GQA+DIE HA+ I+ +K  LN+I  +  G+  E ++K  DRD+ M+A EA +
Sbjct: 124 HQPAGGTQGQATDIEIHARRIMNMKESLNKILAERTGQPLERIQKDTDRDYFMTAQEAKE 183

Query: 198 WGVVDKVL 205
           +G++D+V+
Sbjct: 184 YGIIDEVI 191


>gi|218885218|ref|YP_002434539.1| ATP-dependent Clp protease proteolytic subunit [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|226706450|sp|B8DNL4|CLPP_DESVM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|218756172|gb|ACL07071.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 201

 Score =  260 bits (664), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 116/192 (60%), Positives = 155/192 (80%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP+V+E + R ER+YDIYSRLLK+RI+ +   I+D +A+LICAQLLFLE+ENP+KEI LY
Sbjct: 3   VPIVIETSGRSERAYDIYSRLLKDRIILLGTPIDDQVASLICAQLLFLESENPEKEIYLY 62

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAGMAIYDTMQ+I  P++T C+GQAASMG+LLL+AG  GMR ALPN+RI++H
Sbjct: 63  INSPGGSVTAGMAIYDTMQYITSPVATLCLGQAASMGALLLAAGAPGMRHALPNSRIMIH 122

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGGF GQASDI+ HA++++++K  LNEI  ++ G+  E V    +RD+ M  +EA ++
Sbjct: 123 QPSGGFHGQASDIDIHAREVLRMKANLNEIMARHTGQPVERVADDTERDYFMGPAEAKEY 182

Query: 199 GVVDKVLMSRID 210
           G++D +L SR D
Sbjct: 183 GIIDSILTSRRD 194


>gi|311695076|gb|ADP97949.1| ATP-dependent Clp protease, proteolytic subunit ClpP [marine
           bacterium HP15]
          Length = 201

 Score =  259 bits (663), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 115/193 (59%), Positives = 152/193 (78%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVP+V+EQT RGERS+DIYSRLLKER++F+ G +EDHMA LI AQLLFLE+ENP K+I 
Sbjct: 6   GLVPIVIEQTARGERSFDIYSRLLKERVIFMVGPVEDHMANLIVAQLLFLESENPDKDIH 65

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP ++T C+GQAASMG+ LL+ G  G R  LPN+R++
Sbjct: 66  LYINSPGGSVTAGMSIYDTMQFIKPDVATLCVGQAASMGAFLLAGGAAGKRACLPNSRVM 125

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG+ GQA+DIE H ++I+KI+  LN I   + G+  E + K  DRD+ M  ++A 
Sbjct: 126 IHQPLGGYQGQATDIEIHTREILKIRHTLNSILAHHTGQDLETIAKDTDRDNFMDPAQAK 185

Query: 197 DWGVVDKVLMSRI 209
           ++G++D +L  R+
Sbjct: 186 EYGLIDSILDKRV 198


>gi|261405359|ref|YP_003241600.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
           sp. Y412MC10]
 gi|329923469|ref|ZP_08278950.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Paenibacillus sp. HGF5]
 gi|261281822|gb|ACX63793.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
           sp. Y412MC10]
 gi|328941269|gb|EGG37564.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Paenibacillus sp. HGF5]
          Length = 196

 Score =  259 bits (663), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 120/192 (62%), Positives = 154/192 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT+RGERSYDIYSRLLK+RI+F++  I+D +A L+ AQLLFL AE+P+K+I
Sbjct: 1   MSLVPMVVEQTSRGERSYDIYSRLLKDRIIFLSSAIDDDVANLVIAQLLFLAAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG VTAGM IYDTMQ IKP +ST C+G AASMGSLLL+AG  G R+AL N+ +
Sbjct: 61  SLYINSPGGSVTAGMGIYDTMQLIKPDVSTICVGMAASMGSLLLTAGAPGKRYALENSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDI+ HA  I+K +++LN+IYV+  G+  E++E+  DRD  MSA EA
Sbjct: 121 MIHQPLGGIQGQASDIQIHADWIIKTRQKLNQIYVERTGQPLEKIERDTDRDFFMSAEEA 180

Query: 196 CDWGVVDKVLMS 207
             +G++D VL S
Sbjct: 181 KAYGIIDDVLSS 192


>gi|325266755|ref|ZP_08133428.1| ATP-dependent Clp protease, protease subunit [Kingella
           denitrificans ATCC 33394]
 gi|324981757|gb|EGC17396.1| ATP-dependent Clp protease, protease subunit [Kingella
           denitrificans ATCC 33394]
          Length = 209

 Score =  259 bits (663), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 125/196 (63%), Positives = 161/196 (82%), Gaps = 2/196 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ+ RGER++DIYSRLLKERI+F+ G ++DH A L+ AQLLFLE+ENP K+I  
Sbjct: 13  LVPTVIEQSGRGERAFDIYSRLLKERIIFLVGPVDDHTANLVVAQLLFLESENPDKDIYF 72

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM+IYDTM+FIKP + T C+GQAASMG+ LLSAG KG RFALPN+RI++
Sbjct: 73  YINSPGGSVTAGMSIYDTMKFIKPDVQTLCLGQAASMGAFLLSAGTKGKRFALPNSRIMI 132

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASDIE HA++++K+K +LN+I   + GK+ EEVE+  DRD+ MSA EA
Sbjct: 133 HQPLISGGLGGQASDIEIHARELLKLKEKLNKILADHTGKSIEEVERDTDRDNFMSAQEA 192

Query: 196 CDWGVVDKVLMSRIDI 211
            ++G++DKV+ SR D+
Sbjct: 193 MEYGLIDKVITSRNDV 208


>gi|295698387|ref|YP_003603042.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Candidatus
           Riesia pediculicola USDA]
 gi|291157158|gb|ADD79603.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Candidatus
           Riesia pediculicola USDA]
          Length = 196

 Score =  259 bits (663), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 113/193 (58%), Positives = 158/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++P V+E+T  GERSYDIYSRLLKERI+F+TG IED+MA LI +QLLFLE+EN  KEI
Sbjct: 1   MSIIPTVIEKTVFGERSYDIYSRLLKERIIFLTGYIEDNMANLIISQLLFLESENQTKEI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG++T+G++IYDT+QFI P +ST C+GQA SMG+ LL++G KG R+ LPN+RI
Sbjct: 61  YLYINSPGGIITSGISIYDTIQFIMPKVSTICIGQACSMGAFLLASGAKGKRYCLPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP G F GQA+DIE H ++I+K+K ++NE+  K+ GK  E++EK  +RD+ +S+ EA
Sbjct: 121 MIHQPMGSFRGQATDIEIHTKEIIKLKSKMNELMAKHTGKQVEQIEKDTERDYFLSSEEA 180

Query: 196 CDWGVVDKVLMSR 208
            D+G+VD+V ++R
Sbjct: 181 VDYGLVDRVYLNR 193


>gi|253681101|ref|ZP_04861904.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum D str. 1873]
 gi|331270305|ref|YP_004396797.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum BKT015925]
 gi|253562950|gb|EES92396.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum D str. 1873]
 gi|329126855|gb|AEB76800.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum BKT015925]
          Length = 195

 Score =  259 bits (663), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 120/193 (62%), Positives = 155/193 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQTNRGERSYDIYSRLLK+RI+F+  ++ D  A+L+ AQLLFLEAE+P K+I
Sbjct: 1   MSLVPVVVEQTNRGERSYDIYSRLLKDRIIFLGEEVNDVSASLVVAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +TAGMAIYDTMQ+IKP +ST C+G AASMG+ LL+AG KG RFALPN+ I
Sbjct: 61  YLYINSPGGSITAGMAIYDTMQYIKPDVSTICIGMAASMGAFLLTAGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DI  HA  I+KIK +LN+I  +  GK  E ++K ++RD+ M A EA
Sbjct: 121 MIHQPLGGFQGQATDIGIHANRILKIKDKLNKILSERTGKPLEVIKKDVERDNFMEADEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++D V+ SR
Sbjct: 181 KEYGLIDDVITSR 193


>gi|313499614|gb|ADR60980.1| ClpP [Pseudomonas putida BIRD-1]
          Length = 192

 Score =  259 bits (663), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 117/188 (62%), Positives = 151/188 (80%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MV+EQ+ RGER+YDIYSRLLKER++F+ G +ED+MA L+ AQLLFLEAENP K+I LYIN
Sbjct: 1   MVIEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLVVAQLLFLEAENPDKDIHLYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+ LL+AG KG R  LPN+R+++HQP
Sbjct: 61  SPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAAGAKGKRHCLPNSRVMIHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            GGF GQA+DIE HAQ+I+ IK RLNE+   + G+  E +++  +RD+ MSAS A ++G+
Sbjct: 121 LGGFQGQATDIEIHAQEILNIKARLNELLAYHTGQDLETIKRDTERDNFMSASRAAEYGL 180

Query: 201 VDKVLMSR 208
           +D V   R
Sbjct: 181 IDSVYDKR 188


>gi|293606140|ref|ZP_06688505.1| ATP-dependent Clp protease proteolytic subunit [Achromobacter
           piechaudii ATCC 43553]
 gi|292815595|gb|EFF74711.1| ATP-dependent Clp protease proteolytic subunit [Achromobacter
           piechaudii ATCC 43553]
          Length = 217

 Score =  259 bits (663), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 117/193 (60%), Positives = 152/193 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG +PMV+EQ+ RGER+YDIYSRLL+ER++F+ G + D  A L+ AQLLFLE+ENP K+I
Sbjct: 22  LGYIPMVIEQSGRGERAYDIYSRLLRERLIFLVGPVNDATANLVVAQLLFLESENPDKDI 81

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG V AGMAI+DTMQFIKP +ST C G AASMG+ LL+AG+KG RF LPN+RI
Sbjct: 82  SLYINSPGGSVYAGMAIFDTMQFIKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRI 141

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQASDI+  A++I+ ++ RLN I   N G++ E +    +RD+ MSA +A
Sbjct: 142 MIHQPSGGAQGQASDIQIQAREILDLRERLNRILADNTGQSMERIGLDTERDNFMSAEDA 201

Query: 196 CDWGVVDKVLMSR 208
             +G+VDKV+ SR
Sbjct: 202 VSYGLVDKVMSSR 214


>gi|121593621|ref|YP_985517.1| ATP-dependent Clp protease proteolytic subunit [Acidovorax sp.
           JS42]
 gi|166201795|sp|A1W5B6|CLPP_ACISJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|120605701|gb|ABM41441.1| ATP-dependent Clp protease proteolytic subunit ClpP [Acidovorax sp.
           JS42]
          Length = 202

 Score =  259 bits (663), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 116/193 (60%), Positives = 154/193 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG++PMV+EQ+ RGERSYDIYSRLLKER++F+ G++ D  A L+ AQLLFLE+ENP K+I
Sbjct: 9   LGMIPMVIEQSGRGERSYDIYSRLLKERVIFLVGEVNDQTANLVVAQLLFLESENPDKDI 68

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S YINSPGG VTAGMAIYDTMQFIKP +ST C G AASMG+ LL+AG KG R++LPN++I
Sbjct: 69  SFYINSPGGSVTAGMAIYDTMQFIKPDVSTLCCGFAASMGAFLLAAGAKGKRYSLPNSKI 128

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQ  GG  GQA+DIE HA+DI++ K ++N I  +  G+  E+V+   +RD+ M+A EA
Sbjct: 129 MIHQVLGGARGQATDIEIHARDILRTKEQMNRILAERTGQPIEKVKADTERDYFMTADEA 188

Query: 196 CDWGVVDKVLMSR 208
            D+G+VD+V+  R
Sbjct: 189 KDYGIVDQVIAKR 201


>gi|15895898|ref|NP_349247.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           acetobutylicum ATCC 824]
 gi|18202304|sp|P58276|CLPP_CLOAB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|15025667|gb|AAK80587.1|AE007761_6 Protease subunits of ATP-dependent protease, ClpP [Clostridium
           acetobutylicum ATCC 824]
 gi|325510050|gb|ADZ21686.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           acetobutylicum EA 2018]
          Length = 193

 Score =  259 bits (663), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 116/190 (61%), Positives = 154/190 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLLK+R++F+  ++ D  A+L+ AQLLFLE+E+P K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLKDRVIFLGEEVNDTTASLVVAQLLFLESEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +T+GMAIYDTMQ++KP +ST C+G AASMGS LL+AG  G RFALPN+ I
Sbjct: 61  YLYINSPGGSITSGMAIYDTMQYVKPDVSTICIGMAASMGSFLLTAGAPGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DI  HAQ I++IK++LN IY +  GK  E +EK  DRDH +SA EA
Sbjct: 121 MIHQPLGGFKGQATDIGIHAQRILEIKKKLNSIYSERTGKPIEVIEKDTDRDHFLSAEEA 180

Query: 196 CDWGVVDKVL 205
            ++G++D+V+
Sbjct: 181 KEYGLIDEVI 190


>gi|53719039|ref|YP_108025.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           pseudomallei K96243]
 gi|121601387|ref|YP_993274.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia mallei
           SAVP1]
 gi|124386617|ref|YP_001029282.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia mallei
           NCTC 10229]
 gi|126440189|ref|YP_001059356.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           pseudomallei 668]
 gi|126450257|ref|YP_001080784.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia mallei
           NCTC 10247]
 gi|126451473|ref|YP_001066627.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           pseudomallei 1106a]
 gi|134277993|ref|ZP_01764708.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei 305]
 gi|217421679|ref|ZP_03453183.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei 576]
 gi|226197408|ref|ZP_03792985.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei Pakistan 9]
 gi|237812684|ref|YP_002897135.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei MSHR346]
 gi|238562204|ref|ZP_00440781.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           mallei GB8 horse 4]
 gi|242317499|ref|ZP_04816515.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei 1106b]
 gi|251766649|ref|ZP_02264557.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           mallei PRL-20]
 gi|254178458|ref|ZP_04885113.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           mallei ATCC 10399]
 gi|254189184|ref|ZP_04895695.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254206398|ref|ZP_04912750.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           mallei JHU]
 gi|254258354|ref|ZP_04949408.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei 1710a]
 gi|254297312|ref|ZP_04964765.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei 406e]
 gi|254358192|ref|ZP_04974465.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           mallei 2002721280]
 gi|67460243|sp|Q63V41|CLPP_BURPS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166201803|sp|A3MKJ8|CLPP_BURM7 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166201804|sp|A2SBG3|CLPP_BURM9 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166201805|sp|A1V4X1|CLPP_BURMS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166201806|sp|A3NWA6|CLPP_BURP0 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166201807|sp|A3NAI5|CLPP_BURP6 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|52209453|emb|CAH35404.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           pseudomallei K96243]
 gi|121230197|gb|ABM52715.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           mallei SAVP1]
 gi|124294637|gb|ABN03906.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           mallei NCTC 10229]
 gi|126219682|gb|ABN83188.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei 668]
 gi|126225115|gb|ABN88655.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei 1106a]
 gi|126243127|gb|ABO06220.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           mallei NCTC 10247]
 gi|134251643|gb|EBA51722.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei 305]
 gi|147753841|gb|EDK60906.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           mallei JHU]
 gi|148027319|gb|EDK85340.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           mallei 2002721280]
 gi|157807201|gb|EDO84371.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei 406e]
 gi|157936863|gb|EDO92533.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160699497|gb|EDP89467.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           mallei ATCC 10399]
 gi|217395421|gb|EEC35439.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei 576]
 gi|225930787|gb|EEH26797.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei Pakistan 9]
 gi|237504658|gb|ACQ96976.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei MSHR346]
 gi|238523066|gb|EEP86507.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           mallei GB8 horse 4]
 gi|242140738|gb|EES27140.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei 1106b]
 gi|243065058|gb|EES47244.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           mallei PRL-20]
 gi|254217043|gb|EET06427.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei 1710a]
          Length = 217

 Score =  259 bits (663), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 120/202 (59%), Positives = 155/202 (76%)

Query: 7   AKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
           A +D E   LGLVP+VVE + RGERSYDIYSRLLKERIVF+ G++ D  A L+ AQLLFL
Sbjct: 15  APRDFEAQALGLVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFL 74

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E+ENP K+ISLYINSPGG V+AGMAIYDTMQF+KP +ST CMG AASMG+ LL++G KG 
Sbjct: 75  ESENPDKDISLYINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGK 134

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           R+ALPNAR+++HQP GG  GQASDIE  A++I+ ++ RLN +   + G+  E + +  DR
Sbjct: 135 RYALPNARVMIHQPLGGARGQASDIEIQAREILYLRDRLNHLLAHHTGQDVERIARDTDR 194

Query: 187 DHIMSASEACDWGVVDKVLMSR 208
           D+ MS+ +A  +G++D V   R
Sbjct: 195 DNFMSSEDAKAYGLIDHVSTKR 216


>gi|323449375|gb|EGB05263.1| hypothetical protein AURANDRAFT_31167 [Aureococcus anophagefferens]
          Length = 194

 Score =  259 bits (663), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 118/191 (61%), Positives = 156/191 (81%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VPMV+E+++RGER++DIYSRLLKERI+ + G + D +A+++ AQLLFLE+E+P   IS+
Sbjct: 1   MVPMVIERSSRGERAFDIYSRLLKERIIILNGPVHDELASVVTAQLLFLESEDPTSPISM 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVTAG+AIYDTMQ+I+P ++T CMGQAASMGSLLL+AG  GMR ALPNA+I+L
Sbjct: 61  YINSPGGVVTAGLAIYDTMQYIQPAVATLCMGQAASMGSLLLAAGADGMRRALPNAQIML 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQASDI   A++I+K + +LN+IYV +  K   +VEK +DRD   +A EA D
Sbjct: 121 HQPSGGAQGQASDIAIVAKEILKTRAKLNDIYVHHTKKPLADVEKVMDRDSYFTAQEAMD 180

Query: 198 WGVVDKVLMSR 208
           +GVVD+V+  R
Sbjct: 181 FGVVDEVVHPR 191


>gi|168186116|ref|ZP_02620751.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum C str. Eklund]
 gi|169296133|gb|EDS78266.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum C str. Eklund]
          Length = 195

 Score =  259 bits (663), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 120/193 (62%), Positives = 155/193 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQTNRGERSYDIYSRLLK+RI+F+  ++ D  A+L+ AQLLFLEAE+P K+I
Sbjct: 1   MSLVPVVVEQTNRGERSYDIYSRLLKDRIIFLGEEVNDVSASLVVAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +TAGMAIYDTMQ+IKP +ST C+G AASMG+ LL+AG KG RFALPN+ I
Sbjct: 61  YLYINSPGGSITAGMAIYDTMQYIKPDVSTICIGMAASMGAFLLTAGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DI  HA  I+KIK +LN+I  +  GK  E ++K ++RD+ M A EA
Sbjct: 121 MIHQPLGGFQGQATDIGIHANRILKIKDKLNKILSERTGKPLEVIKKDVERDNFMEAEEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++D V+ SR
Sbjct: 181 KEYGLIDDVITSR 193


>gi|23099911|ref|NP_693377.1| ATP-dependent Clp protease proteolytic subunit [Oceanobacillus
           iheyensis HTE831]
 gi|60389793|sp|Q8ENM5|CLPP_OCEIH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|22778142|dbj|BAC14412.1| ATP-dependent Clp protease proteolytic subunit [Oceanobacillus
           iheyensis HTE831]
          Length = 193

 Score =  259 bits (663), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 116/190 (61%), Positives = 154/190 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQTNRGER+YDIYSRLLK+RI+ +   I+D+++  I AQLLFLEAE+P K+I
Sbjct: 1   MNLVPTVIEQTNRGERAYDIYSRLLKDRIILLGSGIDDNVSNSIVAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG +TAGMAIYDTM FIKP +ST C+G AASMG+ LL+AGEKG RFALPN+ I
Sbjct: 61  SLYINSPGGSITAGMAIYDTMNFIKPNVSTICIGMAASMGAFLLTAGEKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DIE HA+ I+ IKRR+NEI  +  G+  E +E+  +RD+ M+A ++
Sbjct: 121 MIHQPLGGTQGQATDIEIHAKRIIDIKRRMNEIMAEKTGQPIEVIERDTERDNFMTADQS 180

Query: 196 CDWGVVDKVL 205
            ++G++DK+L
Sbjct: 181 VEYGLIDKIL 190


>gi|187477999|ref|YP_786023.1| ATP-dependent Clp protease proteolytic subunit [Bordetella avium
           197N]
 gi|115422585|emb|CAJ49110.1| ATP-dependent Clp protease proteolytic subunit [Bordetella avium
           197N]
          Length = 217

 Score =  259 bits (663), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 117/196 (59%), Positives = 153/196 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG +PMVVEQ+ RGER+YDIYSRLL+ER++F+ G + D  A L+ AQLLFLE+ENP K+I
Sbjct: 22  LGYIPMVVEQSGRGERAYDIYSRLLRERLIFLVGPVNDATANLVVAQLLFLESENPDKDI 81

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S YINSPGG V AGMAI+DTMQF+KP +ST C G AASMG+ LL+AG+KG RF+LPN+RI
Sbjct: 82  SFYINSPGGSVYAGMAIFDTMQFVKPDVSTLCTGLAASMGAFLLAAGKKGKRFSLPNSRI 141

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQASDI+  A++I+ ++ RLN I  +N G++ E +    +RD  MSA +A
Sbjct: 142 MIHQPSGGAQGQASDIQIQAKEILDLRERLNRILAENTGQSMERIAIDTERDTFMSAEDA 201

Query: 196 CDWGVVDKVLMSRIDI 211
             +G+VDKVL  R D+
Sbjct: 202 LSYGLVDKVLARREDV 217


>gi|254179427|ref|ZP_04886026.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei 1655]
 gi|254200063|ref|ZP_04906429.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           mallei FMH]
 gi|147749659|gb|EDK56733.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           mallei FMH]
 gi|184209967|gb|EDU07010.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei 1655]
          Length = 211

 Score =  259 bits (663), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 120/202 (59%), Positives = 155/202 (76%)

Query: 7   AKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
           A +D E   LGLVP+VVE + RGERSYDIYSRLLKERIVF+ G++ D  A L+ AQLLFL
Sbjct: 9   APRDFEAQALGLVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFL 68

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E+ENP K+ISLYINSPGG V+AGMAIYDTMQF+KP +ST CMG AASMG+ LL++G KG 
Sbjct: 69  ESENPDKDISLYINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGK 128

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           R+ALPNAR+++HQP GG  GQASDIE  A++I+ ++ RLN +   + G+  E + +  DR
Sbjct: 129 RYALPNARVMIHQPLGGARGQASDIEIQAREILYLRDRLNHLLAHHTGQDVERIARDTDR 188

Query: 187 DHIMSASEACDWGVVDKVLMSR 208
           D+ MS+ +A  +G++D V   R
Sbjct: 189 DNFMSSEDAKAYGLIDHVSTKR 210


>gi|283852376|ref|ZP_06369646.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
           sp. FW1012B]
 gi|283572224|gb|EFC20214.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
           sp. FW1012B]
          Length = 204

 Score =  259 bits (663), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 115/196 (58%), Positives = 158/196 (80%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P+V+E T R ER+YDIYSRLL++RI+ +   ++DH+A LICAQLLFLE+E+P+KEI +Y
Sbjct: 4   IPIVIETTGRSERAYDIYSRLLRDRIILLGSAVDDHVANLICAQLLFLESEDPEKEIFMY 63

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDTMQ++ P +ST CMGQAASMG+LLL AG  GMR+ALP++RI++H
Sbjct: 64  INSPGGSVTAGLAIYDTMQYVLPKVSTLCMGQAASMGALLLCAGATGMRYALPHSRIMIH 123

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GGF GQA+DI+ HA++I++I+  LNEI  ++ G+  E+V    DRD+ M+A EA  +
Sbjct: 124 QPMGGFQGQATDIDIHAREILRIRESLNEIMARHTGQDIEKVRVDTDRDYFMNADEAVTY 183

Query: 199 GVVDKVLMSRIDIEEK 214
           G++DKVL SR  + +K
Sbjct: 184 GLIDKVLTSREPVAKK 199


>gi|120610146|ref|YP_969824.1| ATP-dependent Clp protease proteolytic subunit [Acidovorax citrulli
           AAC00-1]
 gi|326316315|ref|YP_004233987.1| ATP-dependent Clp protease proteolytic subunit [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|166201794|sp|A1TM62|CLPP_ACIAC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|120588610|gb|ABM32050.1| ATP-dependent Clp protease proteolytic subunit ClpP [Acidovorax
           citrulli AAC00-1]
 gi|323373151|gb|ADX45420.1| ATP-dependent Clp protease proteolytic subunit [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 202

 Score =  259 bits (662), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 117/193 (60%), Positives = 155/193 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG++PMV+EQ+ RGERSYDIYSRLLKERIVF+ G++ D  A L+ AQLLFLE+ENP K+I
Sbjct: 9   LGMIPMVIEQSGRGERSYDIYSRLLKERIVFLIGEVNDQTANLVVAQLLFLESENPDKDI 68

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S YINSPGG VTAGMAIYDTMQFIKP +ST C+G AASMG+ LL+AG KG RF+LPN++I
Sbjct: 69  SFYINSPGGSVTAGMAIYDTMQFIKPDVSTMCLGFAASMGAFLLAAGAKGKRFSLPNSKI 128

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQ  GG  GQA+DIE HA+DI++ K ++N I  +  G+  E+V+   +RD+ ++A EA
Sbjct: 129 MIHQVLGGARGQATDIEIHARDILRTKDQMNRILAERTGQPLEKVKADTERDYFLTADEA 188

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD+V+  R
Sbjct: 189 KEYGLVDQVVTQR 201


>gi|312128165|ref|YP_003993039.1| ATP-dependent clp protease, proteolytic subunit clpp
           [Caldicellulosiruptor hydrothermalis 108]
 gi|312134617|ref|YP_004001955.1| ATP-dependent clp protease, proteolytic subunit clpp
           [Caldicellulosiruptor owensensis OL]
 gi|312792981|ref|YP_004025904.1| ATP-dependent clp protease, proteolytic subunit clpp
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312876447|ref|ZP_07736431.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311774668|gb|ADQ04155.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Caldicellulosiruptor owensensis OL]
 gi|311778184|gb|ADQ07670.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311796805|gb|EFR13150.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|312180121|gb|ADQ40291.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 195

 Score =  259 bits (662), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 120/192 (62%), Positives = 154/192 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVP+V+EQTNRGER+YDIYSRLLK+RIV ++G+I D +A+LI AQLLFLEAE+P K+I 
Sbjct: 3   ALVPIVIEQTNRGERAYDIYSRLLKDRIVILSGEITDDIASLIVAQLLFLEAEDPDKDIY 62

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAG AIYDTMQ+IKP +ST C+G AASMG+ LL+AG KG RFALPN+ I+
Sbjct: 63  LYINSPGGSVTAGFAIYDTMQYIKPDVSTICVGMAASMGAFLLAAGAKGKRFALPNSEIM 122

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA+DI+ HA+ I+KIK R+N+I  +  G+  E +E+  DRD  M+A EA 
Sbjct: 123 IHQPLGGVRGQATDIKIHAEWILKIKNRINKILSERTGQPIEVIERDTDRDFFMTAEEAL 182

Query: 197 DWGVVDKVLMSR 208
            +G++DKV+  R
Sbjct: 183 KYGIIDKVIERR 194


>gi|153955960|ref|YP_001396725.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           kluyveri DSM 555]
 gi|219856302|ref|YP_002473424.1| hypothetical protein CKR_2959 [Clostridium kluyveri NBRC 12016]
 gi|189082452|sp|A5N2K8|CLPP_CLOK5 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|254763788|sp|B9E685|CLPP_CLOK1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|146348818|gb|EDK35354.1| ClpP [Clostridium kluyveri DSM 555]
 gi|219570026|dbj|BAH08010.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 194

 Score =  259 bits (662), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 119/193 (61%), Positives = 155/193 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQTNRGERSYDIYSRLLK+RIV ++ ++ D  A+LI AQLLFLEAENP K+I
Sbjct: 1   MSLVPVVVEQTNRGERSYDIYSRLLKDRIVMLSEEVNDVTASLIVAQLLFLEAENPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG +TAGMAIYDTMQ+IK  +ST C+G AASMG+ LL+AGEKG RFALPN+ I
Sbjct: 61  YFYINSPGGSITAGMAIYDTMQYIKSDVSTICIGMAASMGAFLLAAGEKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DI  HA  I++IK++LN I  +  G++ E+VEK  +RD+ M+A EA
Sbjct: 121 MIHQPLGGFQGQATDIGIHADRILRIKKKLNAIISERTGQSIEKVEKDTERDNFMTAEEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++D+V   +
Sbjct: 181 KEYGLIDEVFTKK 193


>gi|315645729|ref|ZP_07898853.1| hypothetical protein PVOR_09635 [Paenibacillus vortex V453]
 gi|315279207|gb|EFU42517.1| hypothetical protein PVOR_09635 [Paenibacillus vortex V453]
          Length = 196

 Score =  259 bits (662), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 120/192 (62%), Positives = 153/192 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT+RGERSYDIYSRLLK+RI+F++  I+D +A L+ AQLLFL AE+P+K+I
Sbjct: 1   MSLVPMVVEQTSRGERSYDIYSRLLKDRIIFLSSAIDDDVANLVIAQLLFLAAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG VTAGM IYDTMQ IKP +ST C+G AASMGSLLL+AG  G R+AL N+ +
Sbjct: 61  SLYINSPGGSVTAGMGIYDTMQLIKPDVSTICVGMAASMGSLLLTAGAPGKRYALENSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDI+ HA  I+K + +LN+IYV+  G+  E++E+  DRD  MSA EA
Sbjct: 121 MIHQPLGGIQGQASDIQIHADWIIKTRHKLNQIYVERTGQPLEKIERDTDRDFFMSAEEA 180

Query: 196 CDWGVVDKVLMS 207
             +G++D VL S
Sbjct: 181 KAYGIIDDVLSS 192


>gi|53723667|ref|YP_103112.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia mallei
           ATCC 23344]
 gi|76808778|ref|YP_333874.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           pseudomallei 1710b]
 gi|167719122|ref|ZP_02402358.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           pseudomallei DM98]
 gi|167738116|ref|ZP_02410890.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           pseudomallei 14]
 gi|167815308|ref|ZP_02446988.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           pseudomallei 91]
 gi|167823710|ref|ZP_02455181.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           pseudomallei 9]
 gi|167845261|ref|ZP_02470769.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           pseudomallei B7210]
 gi|167893805|ref|ZP_02481207.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           pseudomallei 7894]
 gi|167902257|ref|ZP_02489462.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           pseudomallei NCTC 13177]
 gi|167910496|ref|ZP_02497587.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           pseudomallei 112]
 gi|167918525|ref|ZP_02505616.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           pseudomallei BCC215]
 gi|67460238|sp|Q62JK7|CLPP_BURMA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|92087004|sp|Q3JRC9|CLPP_BURP1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|52427090|gb|AAU47683.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           mallei ATCC 23344]
 gi|76578231|gb|ABA47706.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei 1710b]
          Length = 207

 Score =  259 bits (662), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 120/202 (59%), Positives = 155/202 (76%)

Query: 7   AKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
           A +D E   LGLVP+VVE + RGERSYDIYSRLLKERIVF+ G++ D  A L+ AQLLFL
Sbjct: 5   APRDFEAQALGLVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFL 64

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E+ENP K+ISLYINSPGG V+AGMAIYDTMQF+KP +ST CMG AASMG+ LL++G KG 
Sbjct: 65  ESENPDKDISLYINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGK 124

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           R+ALPNAR+++HQP GG  GQASDIE  A++I+ ++ RLN +   + G+  E + +  DR
Sbjct: 125 RYALPNARVMIHQPLGGARGQASDIEIQAREILYLRDRLNHLLAHHTGQDVERIARDTDR 184

Query: 187 DHIMSASEACDWGVVDKVLMSR 208
           D+ MS+ +A  +G++D V   R
Sbjct: 185 DNFMSSEDAKAYGLIDHVSTKR 206


>gi|149376712|ref|ZP_01894470.1| ATP-dependent Clp protease proteolytic subunit [Marinobacter
           algicola DG893]
 gi|149358951|gb|EDM47417.1| ATP-dependent Clp protease proteolytic subunit [Marinobacter
           algicola DG893]
          Length = 227

 Score =  259 bits (662), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 114/193 (59%), Positives = 152/193 (78%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVP+V+EQT RGERS+DI+SRLLKER++F+ G +EDHMA LI AQLLFLE+ENP K+I 
Sbjct: 32  GLVPIVIEQTARGERSFDIFSRLLKERVIFLVGPVEDHMANLIVAQLLFLESENPDKDIH 91

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP ++T C+GQAASMG+ LL+ G +G R  LPN+R++
Sbjct: 92  LYINSPGGSVTAGMSIYDTMQFIKPDVATLCVGQAASMGAFLLAGGAEGKRACLPNSRVM 151

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG+ GQA+DIE H ++I+KI+  LN I   + G+  + + K  DRD+ M   +A 
Sbjct: 152 IHQPLGGYQGQATDIEIHTREILKIRHTLNSILAHHTGQKLDTIAKDTDRDNFMDPQQAK 211

Query: 197 DWGVVDKVLMSRI 209
           D+G++D +L  R+
Sbjct: 212 DYGLIDSILDKRV 224


>gi|189424987|ref|YP_001952164.1| ATP-dependent Clp protease proteolytic subunit ClpP [Geobacter
           lovleyi SZ]
 gi|226706453|sp|B3E1Z4|CLPP_GEOLS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|189421246|gb|ACD95644.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacter
           lovleyi SZ]
          Length = 197

 Score =  259 bits (662), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 121/192 (63%), Positives = 155/192 (80%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VPMVVEQ+ RGER+YDIYSRLLKERIVF+ G+I D +A L+ AQLLFLEAE+P K+I LY
Sbjct: 3   VPMVVEQSGRGERAYDIYSRLLKERIVFLGGEINDQVADLVIAQLLFLEAEDPDKDIHLY 62

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGVVTAGMAI+DTM +IK P+ST C+GQAASMG++LL+AGEKG RFALP+ARI++H
Sbjct: 63  INSPGGVVTAGMAIFDTMNYIKAPVSTICIGQAASMGAVLLTAGEKGKRFALPHARIMIH 122

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  GQA+DI   A++I+++KR LN +     G+  E +E+  +RD  MSA EA ++
Sbjct: 123 QPSGGSRGQATDIMIQAEEILRMKRELNRLLADLSGQPVERLEQDTERDFFMSAEEARNY 182

Query: 199 GVVDKVLMSRID 210
           G++D V+  R D
Sbjct: 183 GLIDAVMTRRPD 194


>gi|222110341|ref|YP_002552605.1| ATP-dependent clp protease proteolytic subunit [Acidovorax ebreus
           TPSY]
 gi|254763789|sp|B9MG14|CLPP_DIAST RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|221729785|gb|ACM32605.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acidovorax
           ebreus TPSY]
          Length = 202

 Score =  259 bits (662), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 116/193 (60%), Positives = 154/193 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG++PMV+EQ+ RGERSYDIYSRLLKER++F+ G++ D  A L+ AQLLFLE+ENP K+I
Sbjct: 9   LGMIPMVIEQSGRGERSYDIYSRLLKERVIFLVGEVNDQTANLVVAQLLFLESENPDKDI 68

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S YINSPGG VTAGMAIYDTMQFIKP +ST C G AASMG+ LL+AG KG R++LPN++I
Sbjct: 69  SFYINSPGGSVTAGMAIYDTMQFIKPDVSTLCCGFAASMGAFLLAAGAKGKRYSLPNSKI 128

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQ  GG  GQA+DIE HA+DI++ K ++N I  +  G+  E+V+   +RD+ M+A EA
Sbjct: 129 MIHQVLGGARGQATDIEIHARDILRTKDQMNRILAERTGQPIEKVKADTERDYFMTADEA 188

Query: 196 CDWGVVDKVLMSR 208
            D+G+VD+V+  R
Sbjct: 189 KDYGIVDQVIAKR 201


>gi|114152202|sp|Q2L256|CLPP_BORA1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
          Length = 201

 Score =  259 bits (662), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 117/196 (59%), Positives = 153/196 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG +PMVVEQ+ RGER+YDIYSRLL+ER++F+ G + D  A L+ AQLLFLE+ENP K+I
Sbjct: 6   LGYIPMVVEQSGRGERAYDIYSRLLRERLIFLVGPVNDATANLVVAQLLFLESENPDKDI 65

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S YINSPGG V AGMAI+DTMQF+KP +ST C G AASMG+ LL+AG+KG RF+LPN+RI
Sbjct: 66  SFYINSPGGSVYAGMAIFDTMQFVKPDVSTLCTGLAASMGAFLLAAGKKGKRFSLPNSRI 125

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQASDI+  A++I+ ++ RLN I  +N G++ E +    +RD  MSA +A
Sbjct: 126 MIHQPSGGAQGQASDIQIQAKEILDLRERLNRILAENTGQSMERIAIDTERDTFMSAEDA 185

Query: 196 CDWGVVDKVLMSRIDI 211
             +G+VDKVL  R D+
Sbjct: 186 LSYGLVDKVLARREDV 201


>gi|225714260|gb|ACO12976.1| ATP-dependent Clp protease proteolytic subunit, mitochondrial
           precursor [Lepeophtheirus salmonis]
          Length = 222

 Score =  259 bits (661), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 120/188 (63%), Positives = 159/188 (84%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+VVEQT RGERSYDIYSRLLK+RI+ + GQ++D ++ L+ AQLLFL+AE+ +K I +
Sbjct: 25  LVPIVVEQTGRGERSYDIYSRLLKDRIICLMGQVDDVISGLMVAQLLFLQAESGKKPIHM 84

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+AIYDTMQ+I+PPI+T+C+GQA SMGSLLL+AG KGMR +LPN+RI++
Sbjct: 85  YINSPGGSVTAGLAIYDTMQYIQPPIATWCVGQACSMGSLLLTAGTKGMRHSLPNSRIMV 144

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSG   GQASDI+  AQ+I+ ++ RLN IYVK+ G+  + VEK++DRD+ MSA +A  
Sbjct: 145 HQPSGQSHGQASDIQIQAQEILNLRARLNNIYVKHTGQPLDIVEKSMDRDNFMSADDALK 204

Query: 198 WGVVDKVL 205
           +G++DKVL
Sbjct: 205 FGLIDKVL 212


>gi|222528715|ref|YP_002572597.1| ATP-dependent Clp protease proteolytic subunit
           [Caldicellulosiruptor bescii DSM 6725]
 gi|312622971|ref|YP_004024584.1| ATP-dependent clp protease, proteolytic subunit clpp
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|222455562|gb|ACM59824.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Caldicellulosiruptor bescii DSM 6725]
 gi|312203438|gb|ADQ46765.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 195

 Score =  259 bits (661), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 120/192 (62%), Positives = 154/192 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVP+V+EQTNRGER+YDIYSRLLK+RIV ++G+I D +A+LI AQLLFLEAE+P K+I 
Sbjct: 3   ALVPIVIEQTNRGERAYDIYSRLLKDRIVILSGEITDDIASLIVAQLLFLEAEDPDKDIY 62

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAG AIYDTMQ+IKP +ST C+G AASMG+ LL+AG KG RFALPN+ I+
Sbjct: 63  LYINSPGGSVTAGFAIYDTMQYIKPDVSTICVGLAASMGAFLLAAGAKGKRFALPNSEIM 122

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA+DI+ HA+ I+KIK R+N+I  +  G+  E +E+  DRD  M+A EA 
Sbjct: 123 IHQPLGGVRGQATDIKIHAEWILKIKNRINKILSERTGQPIEVIERDTDRDFFMTAEEAL 182

Query: 197 DWGVVDKVLMSR 208
            +G++DKV+  R
Sbjct: 183 KYGIIDKVIERR 194


>gi|260222837|emb|CBA32804.1| ATP-dependent Clp protease proteolytic subunit [Curvibacter
           putative symbiont of Hydra magnipapillata]
          Length = 220

 Score =  259 bits (661), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 114/193 (59%), Positives = 155/193 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG+VPMV+EQ+ RGERSYDIYSRLLKER++F+ G + D  A L+ AQLLFLE+ENP K+I
Sbjct: 27  LGMVPMVIEQSGRGERSYDIYSRLLKERVIFLVGPVNDQTANLVVAQLLFLESENPDKDI 86

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S YINSPGG V+AGMAIYDTM FIKP +ST C G AASMG+ LL+AG KG RF+LPN+++
Sbjct: 87  SFYINSPGGSVSAGMAIYDTMNFIKPDVSTLCTGMAASMGAFLLAAGAKGKRFSLPNSKV 146

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE HA++I+K + +LN+I  +  G+  E++E+  +RD+ +SA EA
Sbjct: 147 MIHQPLGGTQGQATEIEIHAREILKTREQLNKILAERTGQPLEKIERDTERDYYLSADEA 206

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD+V+  R
Sbjct: 207 KEYGLVDQVIAKR 219


>gi|195051114|ref|XP_001993036.1| GH13604 [Drosophila grimshawi]
 gi|193900095|gb|EDV98961.1| GH13604 [Drosophila grimshawi]
          Length = 255

 Score =  259 bits (661), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 121/205 (59%), Positives = 159/205 (77%), Gaps = 1/205 (0%)

Query: 2   SFEG-CAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           SF+  C+ +      + L+PMVVEQT RGER+YDI+SRLLKERI+ + G I D +++ + 
Sbjct: 12  SFQAKCSTQPLSVRGINLIPMVVEQTGRGERAYDIFSRLLKERIICLMGNITDDISSTVV 71

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFL++EN  K I LYINSPGGVVTAG+AIYDTMQ++KPPI+T+C+GQA SMGSLLL+
Sbjct: 72  AQLLFLQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPIATWCVGQACSMGSLLLA 131

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG  GMR++LPNARI++HQPSGG  GQA+DI  HA++I+KIKR+L  IYVK+    Y E+
Sbjct: 132 AGAPGMRYSLPNARIMIHQPSGGAQGQATDILIHAEEIIKIKRQLTNIYVKHAQYDYAEM 191

Query: 181 EKTLDRDHIMSASEACDWGVVDKVL 205
              ++RDH M+  EA   G++D VL
Sbjct: 192 SSRMERDHFMTPEEAKVLGIIDHVL 216


>gi|254197976|ref|ZP_04904398.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei S13]
 gi|169654717|gb|EDS87410.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei S13]
          Length = 217

 Score =  258 bits (660), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 119/202 (58%), Positives = 155/202 (76%)

Query: 7   AKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
           A +D E   LGLVP+VVE + RGERSYDIYSRLLKERIVF+ G++ D  A L+ AQLLFL
Sbjct: 15  APRDFEAQALGLVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFL 74

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E+ENP K+ISLYINSPGG V+AGMAIYDTMQF+KP +ST CMG AASMG+ LL++G +G 
Sbjct: 75  ESENPDKDISLYINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGARGK 134

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           R+ALPNAR+++HQP GG  GQASDIE  A++I+ ++ RLN +   + G+  E + +  DR
Sbjct: 135 RYALPNARVMIHQPLGGARGQASDIEIQAREILYLRDRLNHLLAHHTGQDVERIARDTDR 194

Query: 187 DHIMSASEACDWGVVDKVLMSR 208
           D+ MS+ +A  +G++D V   R
Sbjct: 195 DNFMSSEDAKAYGLIDHVSTKR 216


>gi|120554758|ref|YP_959109.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Marinobacter
           aquaeolei VT8]
 gi|120324607|gb|ABM18922.1| ATP-dependent Clp protease proteolytic subunit ClpP [Marinobacter
           aquaeolei VT8]
          Length = 211

 Score =  258 bits (660), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 112/193 (58%), Positives = 155/193 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVP+V+EQT RGERS+DIYSRLLKER++F+ G +EDHMA L+ AQLLFLE+ENP K+I 
Sbjct: 16  GLVPIVIEQTARGERSFDIYSRLLKERVIFLVGPVEDHMANLVVAQLLFLESENPDKDIH 75

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG V+AGM+IYDTMQF+KP ++T C+GQAASMG+ LLS G KG R  LP++R++
Sbjct: 76  LYINSPGGSVSAGMSIYDTMQFVKPDVATLCIGQAASMGAFLLSGGAKGKRACLPHSRVM 135

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG+ GQA+DIE H ++I+KI+  LNE+  ++ G+  E + +  DRD+ M  ++A 
Sbjct: 136 IHQPLGGYQGQATDIEIHTREILKIRNTLNELLAEHTGQDIETIARDTDRDNFMDPAQAK 195

Query: 197 DWGVVDKVLMSRI 209
           ++G++D +L  R+
Sbjct: 196 EYGLIDTILDKRV 208


>gi|124266485|ref|YP_001020489.1| ATP-dependent Clp protease proteolytic subunit ClpP [Methylibium
           petroleiphilum PM1]
 gi|189082491|sp|A2SFB5|CLPP_METPP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|124259260|gb|ABM94254.1| ATP-dependent Clp protease proteolytic subunit ClpP [Methylibium
           petroleiphilum PM1]
          Length = 202

 Score =  258 bits (660), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 114/193 (59%), Positives = 154/193 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG+VP+V+EQ+ RGER+YDIYSRLL+ER++F+ G + D  A L+ AQLLFLE+ENP K+I
Sbjct: 9   LGMVPVVIEQSGRGERAYDIYSRLLRERVIFLVGPVNDQTANLVVAQLLFLESENPDKDI 68

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG V+AG++I+DTMQFIKP +ST CMG AASMG+ LL+AG KG RFALPN+R+
Sbjct: 69  SLYINSPGGSVSAGLSIFDTMQFIKPDVSTLCMGIAASMGAFLLAAGAKGKRFALPNSRV 128

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+DIE  A++I+K++  LN I  +  G+  E++    +RD+ MSA EA
Sbjct: 129 MIHQPSGGAQGQATDIEIQAREILKLRESLNGILAERTGQPLEKIRADSERDYFMSAEEA 188

Query: 196 CDWGVVDKVLMSR 208
             +G++DKV+  R
Sbjct: 189 TGYGLIDKVIAQR 201


>gi|241764198|ref|ZP_04762232.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acidovorax
           delafieldii 2AN]
 gi|241366475|gb|EER60979.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acidovorax
           delafieldii 2AN]
          Length = 202

 Score =  258 bits (660), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 114/193 (59%), Positives = 155/193 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG+VPMV+EQ+ RGERSYDIYSRLLKER++F+ G++ D  A L+ AQLLFLE+ENP K+I
Sbjct: 9   LGMVPMVIEQSGRGERSYDIYSRLLKERVIFLVGEVNDQTANLVVAQLLFLESENPDKDI 68

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S YINSPGG VTAGM+IYDTMQFIKP +ST C+G AASMG+ LL+AG KG RF+LPN+++
Sbjct: 69  SFYINSPGGSVTAGMSIYDTMQFIKPDVSTLCVGFAASMGAFLLAAGAKGKRFSLPNSKV 128

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQ  GG  GQA+DIE HA+DI++ K ++N I  +  G+  E+V+   +RD+ ++A EA
Sbjct: 129 MIHQVLGGARGQATDIEIHARDILRTKDQMNRILAERTGQPLEKVKADTERDYFLTADEA 188

Query: 196 CDWGVVDKVLMSR 208
            D+G++D+V+  R
Sbjct: 189 KDYGIIDQVIHKR 201


>gi|227486247|ref|ZP_03916563.1| endopeptidase Clp [Anaerococcus lactolyticus ATCC 51172]
 gi|227235658|gb|EEI85673.1| endopeptidase Clp [Anaerococcus lactolyticus ATCC 51172]
          Length = 205

 Score =  258 bits (660), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 117/191 (61%), Positives = 152/191 (79%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQTNRGER+YDIYSRLLK+RI+F++G++ D ++ +I AQLLFLE+E+P K+I  
Sbjct: 14  LVPTVIEQTNRGERAYDIYSRLLKDRIIFLSGEVRDEVSDIIIAQLLFLESEDPNKDIHF 73

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G+AIYDTM +IKP +ST C+GQAASMG++LLS+G KG RF+LPN+ I++
Sbjct: 74  YINSPGGVVTSGLAIYDTMNYIKPDVSTICIGQAASMGAVLLSSGAKGKRFSLPNSNIMI 133

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQASDI   A+ I+KIK  LN I  +N GK    +EK  DRD  M+A EA  
Sbjct: 134 HQPSGGAQGQASDIVIQAEQILKIKANLNRILSENTGKDLATIEKDTDRDFAMTAEEALK 193

Query: 198 WGVVDKVLMSR 208
           +G++DKV+ S 
Sbjct: 194 YGLIDKVIESN 204


>gi|170692395|ref|ZP_02883558.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           graminis C4D1M]
 gi|307729638|ref|YP_003906862.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           sp. CCGE1003]
 gi|323526047|ref|YP_004228200.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           sp. CCGE1001]
 gi|170142825|gb|EDT10990.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           graminis C4D1M]
 gi|307584173|gb|ADN57571.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           sp. CCGE1003]
 gi|323383049|gb|ADX55140.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           sp. CCGE1001]
          Length = 217

 Score =  258 bits (660), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 120/202 (59%), Positives = 153/202 (75%)

Query: 7   AKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
           + +D E   LGLVP+VVE + RGERSYDIYSRLLKERIVF+ G++ D  A L+ AQ+LFL
Sbjct: 15  SSRDLEAQALGLVPIVVETSGRGERSYDIYSRLLKERIVFLVGEVNDQTANLVVAQMLFL 74

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E+ENP K+I  YINSPGG V+AGMAIYDTMQFIKP +ST CMG AASMG+ LL+AG KG 
Sbjct: 75  ESENPDKDIYFYINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLAAGAKGK 134

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           RFALPN+R+++HQP GG  GQASDIE  A++I+ +K RLN +   + G+  E + +  DR
Sbjct: 135 RFALPNSRVMIHQPLGGARGQASDIEIQAREILYLKERLNHLLAHHTGQPVERIARDTDR 194

Query: 187 DHIMSASEACDWGVVDKVLMSR 208
           D+ MS  +A  +G+VD+V   R
Sbjct: 195 DNFMSGDDAQAYGLVDQVAHKR 216


>gi|18310375|ref|NP_562309.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           perfringens str. 13]
 gi|110799833|ref|YP_696088.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           perfringens ATCC 13124]
 gi|110803073|ref|YP_698704.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           perfringens SM101]
 gi|168207806|ref|ZP_02633811.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           perfringens E str. JGS1987]
 gi|168212102|ref|ZP_02637727.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           perfringens B str. ATCC 3626]
 gi|168215325|ref|ZP_02640950.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           perfringens CPE str. F4969]
 gi|168217824|ref|ZP_02643449.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           perfringens NCTC 8239]
 gi|169342288|ref|ZP_02863366.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           perfringens C str. JGS1495]
 gi|182627116|ref|ZP_02954834.1| CAAX amino terminal protease family protein [Clostridium
           perfringens D str. JGS1721]
 gi|21759067|sp|Q8XKK1|CLPP_CLOPE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|123146116|sp|Q0ST53|CLPP_CLOPS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|123148745|sp|Q0TQK2|CLPP_CLOP1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|18145055|dbj|BAB81099.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           perfringens str. 13]
 gi|110674480|gb|ABG83467.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           perfringens ATCC 13124]
 gi|110683574|gb|ABG86944.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           perfringens SM101]
 gi|169299615|gb|EDS81674.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           perfringens C str. JGS1495]
 gi|170660863|gb|EDT13546.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           perfringens E str. JGS1987]
 gi|170709986|gb|EDT22168.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           perfringens B str. ATCC 3626]
 gi|170713287|gb|EDT25469.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           perfringens CPE str. F4969]
 gi|177907505|gb|EDT70163.1| CAAX amino terminal protease family protein [Clostridium
           perfringens D str. JGS1721]
 gi|182380151|gb|EDT77630.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           perfringens NCTC 8239]
          Length = 194

 Score =  258 bits (660), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 115/188 (61%), Positives = 156/188 (82%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQT++GERSYDI+SRLLK+RI+ ++G++ D  A L+ AQLLFLE+E+P K+I L
Sbjct: 4   LVPMVVEQTSKGERSYDIFSRLLKDRIIMLSGEVNDVTANLVVAQLLFLESEDPDKDIHL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +T+GMAIYDTMQ+IKP +ST C+G AASMG+ LLS+G KG RFALPNA I++
Sbjct: 64  YINSPGGSITSGMAIYDTMQYIKPDVSTICIGMAASMGAFLLSSGAKGKRFALPNAEIMI 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQA+DI+ HA+ I+KIK +LN+I  +N  +  E+++  ++RD+ M ASEA +
Sbjct: 124 HQPLGGFQGQATDIDIHAKRILKIKDKLNQILSENTNQPLEKIKVDVERDYFMEASEAVE 183

Query: 198 WGVVDKVL 205
           +G++DKV+
Sbjct: 184 YGLIDKVI 191


>gi|319787636|ref|YP_004147111.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317466148|gb|ADV27880.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 209

 Score =  258 bits (660), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 123/195 (63%), Positives = 165/195 (84%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           L LVPMVVEQT+RGER+YDIYSRLLKER++F+ G +EDH+A +I AQ+LFLEAENP+K+I
Sbjct: 9   LNLVPMVVEQTSRGERAYDIYSRLLKERVIFLVGPVEDHVANVIIAQMLFLEAENPEKDI 68

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG+VTAGMAIYDTMQ+IKP +ST C+GQAASMG++LL+AG  G R+ALPN+R+
Sbjct: 69  SLYINSPGGLVTAGMAIYDTMQYIKPDVSTICVGQAASMGAVLLAAGAAGKRYALPNSRV 128

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DI+ HA++I+ ++ RLNEI  ++ G++ E + +  +RD+  SA+EA
Sbjct: 129 MIHQPLGGFQGQATDIDIHAREILSMRARLNEILAQHTGQSIETIARDTERDNFKSAAEA 188

Query: 196 CDWGVVDKVLMSRID 210
             +G+VD+VL  R D
Sbjct: 189 KAYGLVDEVLERRPD 203


>gi|302871325|ref|YP_003839961.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574184|gb|ADL41975.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 195

 Score =  258 bits (659), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 119/192 (61%), Positives = 154/192 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVP+V+EQTNRGER+YDIYSRLLK+RIV ++G+I D +A+LI AQLLFLEAE+P K+I 
Sbjct: 3   ALVPIVIEQTNRGERAYDIYSRLLKDRIVILSGEITDDIASLIVAQLLFLEAEDPDKDIY 62

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAG AIYDTMQ+IKP +ST C+G AASMG+ LL+AG KG RFALPN+ I+
Sbjct: 63  LYINSPGGSVTAGFAIYDTMQYIKPDVSTICVGMAASMGAFLLAAGAKGKRFALPNSEIM 122

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA+DI+ HA+ I+KIK R+N+I  +  G+  E +E+  DRD  M+A EA 
Sbjct: 123 IHQPLGGVRGQATDIKIHAEWILKIKNRINKILSERTGQPIEVIERDTDRDFFMTAEEAL 182

Query: 197 DWGVVDKVLMSR 208
            +G++D+V+  R
Sbjct: 183 KYGIIDRVIERR 194


>gi|188590743|ref|YP_001921998.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum E3 str. Alaska E43]
 gi|251778109|ref|ZP_04821029.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|226706443|sp|B2UX13|CLPP_CLOBA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|188501024|gb|ACD54160.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum E3 str. Alaska E43]
 gi|243082424|gb|EES48314.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 199

 Score =  258 bits (659), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 117/190 (61%), Positives = 154/190 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT+RGERSYDI+SRLLKERI+ ++G++ D  + LI +QLLFLE+E+P K+I
Sbjct: 1   MSLVPMVVEQTSRGERSYDIFSRLLKERIIMLSGEVNDDSSNLIVSQLLFLESEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGG +TAGMAIYDTMQ+IKP +ST C+G AASMG+ LLS+G KG R+ALPNA I
Sbjct: 61  SIYINSPGGSITAGMAIYDTMQYIKPDVSTICVGMAASMGAFLLSSGAKGKRYALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DI+ HA  I+KIK  LN+I  +N  +  E +E  ++RD+ M+A EA
Sbjct: 121 MIHQPLGGFQGQATDIQIHANRILKIKESLNKILSENTNQPLEVIEADVERDNFMTADEA 180

Query: 196 CDWGVVDKVL 205
             +G+VDKV+
Sbjct: 181 KAYGLVDKVI 190


>gi|268680774|ref|YP_003305205.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Sulfurospirillum deleyianum DSM 6946]
 gi|268618805|gb|ACZ13170.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Sulfurospirillum deleyianum DSM 6946]
          Length = 196

 Score =  258 bits (659), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 118/187 (63%), Positives = 155/187 (82%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP+VVE+T RGERSYDIYSRLLK+RI+ ++G+I D +A+ I AQLLFLEAE+P+K+I LY
Sbjct: 5   VPVVVEKTGRGERSYDIYSRLLKDRIIMLSGEINDVVASSIVAQLLFLEAEDPEKDIYLY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGV+T+G +IYDTM +IKP IST C+GQAASMG+ LLSAG KG R+ALPNARI++H
Sbjct: 65  INSPGGVITSGFSIYDTMNYIKPDISTICIGQAASMGAFLLSAGTKGKRYALPNARIMIH 124

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA+DIE  A++I+++K+ LNEI  KNC +   ++ K  +RD  MSA E+C++
Sbjct: 125 QPLGGAQGQATDIEIQAKEILRMKQVLNEILAKNCNQKLPKIIKDTERDFFMSAEESCEY 184

Query: 199 GVVDKVL 205
           G++DKVL
Sbjct: 185 GLIDKVL 191


>gi|209521458|ref|ZP_03270166.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           sp. H160]
 gi|209498114|gb|EDZ98261.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           sp. H160]
          Length = 217

 Score =  258 bits (659), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 120/202 (59%), Positives = 153/202 (75%)

Query: 7   AKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
           + +D E   LGLVP+VVE + RGERSYDIYSRLLKERIVF+ G++ D  A L+ AQ+LFL
Sbjct: 15  SSRDLETQALGLVPIVVETSGRGERSYDIYSRLLKERIVFLVGEVNDQTANLVVAQMLFL 74

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E+ENP K+I  YINSPGG V+AGMAIYDTMQFIKP +ST CMG AASMG+ LL+AG KG 
Sbjct: 75  ESENPDKDIYFYINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLAAGAKGK 134

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           RFALPN+R+++HQP GG  GQASDIE  A++I+ +K RLN +   + G+  E + +  DR
Sbjct: 135 RFALPNSRVMIHQPLGGARGQASDIEIQAREILYLKDRLNHLLAHHTGQPVERIARDTDR 194

Query: 187 DHIMSASEACDWGVVDKVLMSR 208
           D+ MS  +A  +G+VD+V   R
Sbjct: 195 DNFMSGDDAQAYGLVDQVAHKR 216


>gi|319760381|ref|YP_004124319.1| ATP-dependent Clp protease, proteolytic subunit [Candidatus
           Blochmannia vafer str. BVAF]
 gi|318039095|gb|ADV33645.1| ATP-dependent Clp protease, proteolytic subunit [Candidatus
           Blochmannia vafer str. BVAF]
          Length = 215

 Score =  258 bits (659), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 115/194 (59%), Positives = 157/194 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +G++P+V+EQT RGER+YDI+S LLKERI+F+T  IE+H A  I AQ++FLE+ENP K+I
Sbjct: 21  MGIIPIVIEQTARGERAYDIFSLLLKERIIFITDTIENHTANSIVAQMMFLESENPTKDI 80

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG++TAGM+IYDT+QFIKP +ST+CMGQAASMG+ LL+AG KG RF LPNAR+
Sbjct: 81  HLYINSPGGLITAGMSIYDTIQFIKPDVSTYCMGQAASMGAFLLAAGAKGKRFCLPNARV 140

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP G F GQA+DI  H ++I+++K  +N++  K+ GK+ + V K ++RD  +SA EA
Sbjct: 141 MIHQPLGSFQGQATDIAIHTKEILQVKNNINKLIAKHTGKSIDIVIKDMERDCFLSADEA 200

Query: 196 CDWGVVDKVLMSRI 209
            D+G+VD VL  RI
Sbjct: 201 MDYGLVDCVLSKRI 214


>gi|119503321|ref|ZP_01625405.1| ATP-dependent Clp protease proteolytic subunit [marine gamma
           proteobacterium HTCC2080]
 gi|119460967|gb|EAW42058.1| ATP-dependent Clp protease proteolytic subunit [marine gamma
           proteobacterium HTCC2080]
          Length = 212

 Score =  258 bits (659), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 117/200 (58%), Positives = 156/200 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LGL+PMV+EQT+RGERS+DIYSRLLKER++F  G +ED+MA LI AQLLFLE+ENP K+I
Sbjct: 13  LGLIPMVIEQTSRGERSFDIYSRLLKERVIFAVGPVEDNMANLIVAQLLFLESENPDKDI 72

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG++IYDTMQF+KP +ST C+GQAASMG+ LLS G  G R+ LPNAR 
Sbjct: 73  HLYINSPGGSVTAGLSIYDTMQFVKPDVSTMCLGQAASMGAFLLSGGASGKRYILPNART 132

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+DI+  A++I+ I+ RLN +  ++ G+  E +E+  +RD  M A ++
Sbjct: 133 MIHQPSGGAQGQATDIDIQAKEILIIRERLNRLMAEHTGQPLEVIERDTERDRFMDAEQS 192

Query: 196 CDWGVVDKVLMSRIDIEEKS 215
             +G+VD V+ +R  + E S
Sbjct: 193 QSYGLVDHVVNNREVVAEDS 212


>gi|52842086|ref|YP_095885.1| ATP-dependent Clp protease proteolytic subunit [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|54297778|ref|YP_124147.1| ATP-dependent Clp protease proteolytic subunit [Legionella
           pneumophila str. Paris]
 gi|296107452|ref|YP_003619152.1| Protease subunit of ATP-dependent Clp protease [Legionella
           pneumophila 2300/99 Alcoy]
 gi|67460220|sp|Q5X451|CLPP_LEGPA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|67460230|sp|Q5ZUD9|CLPP_LEGPH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|52629197|gb|AAU27938.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|53751563|emb|CAH12981.1| ATP-dependent Clp protease proteolytic subunit [Legionella
           pneumophila str. Paris]
 gi|295649353|gb|ADG25200.1| Protease subunit of ATP-dependent Clp protease [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 214

 Score =  258 bits (659), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 122/192 (63%), Positives = 162/192 (84%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GL+PMV+EQT+RGERSYDIYSRLLKERI+F+ G++EDHMA L+ AQLLFLE+ENP+K+IS
Sbjct: 14  GLIPMVIEQTSRGERSYDIYSRLLKERIIFLLGEVEDHMANLVVAQLLFLESENPEKDIS 73

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGVVTAG+AIYDTMQFIKP +ST C+GQAAS  +LLL AG +G RF LPN+R++
Sbjct: 74  LYINSPGGVVTAGLAIYDTMQFIKPDVSTLCIGQAASAAALLLCAGAEGKRFCLPNSRVM 133

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG+ GQA+DIE HA++ + ++ RLN I  K+  KT +++ +  +RD+ MSA++A 
Sbjct: 134 IHQPLGGYRGQATDIEIHARETLAVRERLNNIMAKHTKKTPDQIMRDTERDNFMSATQAM 193

Query: 197 DWGVVDKVLMSR 208
           ++G++DKVL  R
Sbjct: 194 EYGLIDKVLYDR 205


>gi|332041211|gb|EGI77575.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Hylemonella
           gracilis ATCC 19624]
          Length = 194

 Score =  258 bits (659), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 113/193 (58%), Positives = 157/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +G+VP+V+EQ+ RGERSYDIYSRLL+ER++F+ G + D  A L+ AQLLFLE+ENP KEI
Sbjct: 1   MGMVPIVIEQSGRGERSYDIYSRLLRERVIFLVGPVNDQTANLVVAQLLFLESENPDKEI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG V+AGM+I+DTM FIKP +ST C+G AASMG+ LL+AG KG RF+LPN++I
Sbjct: 61  SLYINSPGGSVSAGMSIFDTMNFIKPDVSTLCIGMAASMGAFLLAAGAKGKRFSLPNSKI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE HA++I+K + +LN+I  +  G+  E++E+  +RD+ +SA EA
Sbjct: 121 MIHQPLGGAQGQATEIEIHAREILKTREQLNKILAERTGQPLEKIERDTERDYYLSADEA 180

Query: 196 CDWGVVDKVLMSR 208
            D+G+VD+V+  R
Sbjct: 181 KDYGLVDQVIAKR 193


>gi|27904898|ref|NP_778024.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
           str. Bp (Baizongia pistaciae)]
 gi|31076632|sp|Q89AA1|CLPP_BUCBP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|27904296|gb|AAO27129.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
           str. Bp (Baizongia pistaciae)]
          Length = 205

 Score =  258 bits (659), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 112/191 (58%), Positives = 159/191 (83%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+PMV+E+T+ GERSYDIYSRLLKERI+F+TG I+D+ A LI AQ+LFLEAEN +++I +
Sbjct: 14  LIPMVIEKTSYGERSYDIYSRLLKERIIFLTGTIDDNTANLIVAQMLFLEAENAKQDIYI 73

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+TAGM+IYDTM+FIKP ++T C+GQA SM +L+L+AG+KG R+ LPN+RI++
Sbjct: 74  YINSPGGVITAGMSIYDTMKFIKPNVNTICIGQACSMAALILTAGKKGYRYCLPNSRIMI 133

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG++GQASDIE HA++I+K+KR+LNE+   +  ++   +EK  +RD  +SA++A  
Sbjct: 134 HQPIGGYNGQASDIEIHAKEIIKVKRKLNELMAFHTSQSINTIEKDTERDCFLSANQAIK 193

Query: 198 WGVVDKVLMSR 208
           +G++D +L  R
Sbjct: 194 YGLIDTILSYR 204


>gi|118444381|ref|YP_878863.1| ATP-dependent Clp protease proteolytic subunit [Clostridium novyi
           NT]
 gi|166201817|sp|A0Q2L1|CLPP_CLONN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|118134837|gb|ABK61881.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           novyi NT]
          Length = 195

 Score =  258 bits (658), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 119/193 (61%), Positives = 154/193 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQTNRGERSYDIYSRLLK+RI+F+  ++ D  A+L+ AQLLFLEAE+P K+I
Sbjct: 1   MSLVPVVVEQTNRGERSYDIYSRLLKDRIIFLGEEVNDVTASLVVAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +TAGMAIYDTMQ+IKP +ST C+G AASMG+ LL+AG KG RFALPN+ I
Sbjct: 61  YLYINSPGGSITAGMAIYDTMQYIKPDVSTICIGMAASMGAFLLTAGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DI  HA  I+KIK +LN I  +  G+  E ++K ++RD+ M A EA
Sbjct: 121 MIHQPLGGFQGQATDIGIHANRILKIKDKLNSILSERTGQPLEVIKKDVERDNFMEAEEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++D V+ SR
Sbjct: 181 KEYGLIDDVITSR 193


>gi|295676517|ref|YP_003605041.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           sp. CCGE1002]
 gi|295436360|gb|ADG15530.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           sp. CCGE1002]
          Length = 217

 Score =  258 bits (658), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 120/202 (59%), Positives = 153/202 (75%)

Query: 7   AKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
           + +D E   LGLVP+VVE + RGERSYDIYSRLLKERIVF+ G++ D  A L+ AQ+LFL
Sbjct: 15  SSRDLEAQALGLVPIVVETSGRGERSYDIYSRLLKERIVFLVGEVNDQTANLVVAQMLFL 74

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E+ENP K+I  YINSPGG V+AGMAIYDTMQFIKP +ST CMG AASMG+ LL+AG KG 
Sbjct: 75  ESENPDKDIYFYINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLAAGAKGK 134

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           RFALPN+R+++HQP GG  GQASDIE  A++I+ +K RLN +   + G+  E + +  DR
Sbjct: 135 RFALPNSRVMIHQPLGGARGQASDIEIQAREILYLKDRLNHLLAHHTGQPVERIARDTDR 194

Query: 187 DHIMSASEACDWGVVDKVLMSR 208
           D+ MS  +A  +G+VD+V   R
Sbjct: 195 DNFMSGDDAQAYGLVDQVAHKR 216


>gi|187928950|ref|YP_001899437.1| ATP-dependent Clp protease proteolytic subunit [Ralstonia pickettii
           12J]
 gi|241663134|ref|YP_002981494.1| ATP-dependent Clp protease proteolytic subunit [Ralstonia pickettii
           12D]
 gi|309781948|ref|ZP_07676679.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ralstonia sp.
           5_7_47FAA]
 gi|187725840|gb|ACD27005.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ralstonia
           pickettii 12J]
 gi|240865161|gb|ACS62822.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ralstonia
           pickettii 12D]
 gi|308919292|gb|EFP64958.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ralstonia sp.
           5_7_47FAA]
          Length = 215

 Score =  258 bits (658), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 114/193 (59%), Positives = 155/193 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LGLVPMVVEQ+ RGER+YDIYSRLLKER++F+ G++ D  A L+ AQLLFLE+ENP K+I
Sbjct: 23  LGLVPMVVEQSGRGERAYDIYSRLLKERVIFMVGEVNDQTANLVVAQLLFLESENPDKDI 82

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG V++G+A+YDTMQFIKP +ST CMG AASMG+ LL+AG KG R ALPN+RI
Sbjct: 83  SLYINSPGGSVSSGLAMYDTMQFIKPDVSTLCMGMAASMGAFLLAAGAKGKRLALPNSRI 142

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDIE  A++I+ ++ RLN +  +  G+  +++ +  DRD+ MS+ +A
Sbjct: 143 MIHQPLGGARGQASDIEIQAREILYLRERLNTVLSEVTGQPVDKIARDTDRDNFMSSEQA 202

Query: 196 CDWGVVDKVLMSR 208
            ++G++D+V+  R
Sbjct: 203 KEYGLIDQVIAKR 215


>gi|298707749|emb|CBJ26066.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ectocarpus
           siliculosus]
          Length = 243

 Score =  258 bits (658), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 118/202 (58%), Positives = 157/202 (77%)

Query: 7   AKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
           A   +  V +  +PMV+E T RGER+YDIYSRLL+ERI+ + G + + M +L+ AQLLFL
Sbjct: 31  AYSSTRRVEMNYLPMVLESTPRGERAYDIYSRLLRERIICMHGPVTEQMTSLVTAQLLFL 90

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E+ENP K I++YINSPGGVVTAG+AIYDTMQ+++P I T CMGQAASMGSLLL+AG   M
Sbjct: 91  ESENPDKPINMYINSPGGVVTAGLAIYDTMQYVRPEICTICMGQAASMGSLLLTAGSPEM 150

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           RF LPNA+++LHQPSGG +G A+DI   A++I+K + RLN+IY ++ G+   E+EK +DR
Sbjct: 151 RFILPNAKVMLHQPSGGANGMAADIAIMAEEIIKTRARLNDIYAEHTGREVGEIEKVMDR 210

Query: 187 DHIMSASEACDWGVVDKVLMSR 208
           D  M+A EA ++GVVDK+L  R
Sbjct: 211 DFYMTAQEAIEFGVVDKILKKR 232


>gi|197117660|ref|YP_002138087.1| ATP-dependent Clp protease proteolytic subunit [Geobacter
           bemidjiensis Bem]
 gi|226706452|sp|B5EI27|CLPP_GEOBB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|197087020|gb|ACH38291.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacter
           bemidjiensis Bem]
          Length = 199

 Score =  258 bits (658), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 115/192 (59%), Positives = 157/192 (81%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+VVEQT RGERSYDIYSRLLK+RI+F+ G I+D++A L+ AQLLFLEAE+P K+I L
Sbjct: 2   LVPIVVEQTGRGERSYDIYSRLLKDRIIFLGGGIDDNVANLVIAQLLFLEAEDPDKDIHL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVTAGMAIYDTM++IK P+ST C+GQAASMG+ LLS GEKG R++L N+RI++
Sbjct: 62  YINSPGGVVTAGMAIYDTMRYIKAPVSTICVGQAASMGAFLLSGGEKGKRYSLVNSRIMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQA+DI  HA++I+++K +LN +  ++ G++ E+V    +RD+ MS  EA +
Sbjct: 122 HQPLGGFQGQATDIHIHAKEILRMKDQLNALLAEHTGQSVEKVAADTERDYFMSGEEAKN 181

Query: 198 WGVVDKVLMSRI 209
           +G++D ++   +
Sbjct: 182 YGIIDAIVTRNV 193


>gi|148359406|ref|YP_001250613.1| ATP-dependent Clp protease proteolytic subunit ClpP [Legionella
           pneumophila str. Corby]
 gi|166201828|sp|A5ID17|CLPP_LEGPC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|148281179|gb|ABQ55267.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Legionella
           pneumophila str. Corby]
          Length = 214

 Score =  258 bits (658), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 122/192 (63%), Positives = 162/192 (84%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GL+PMV+EQT+RGERSYDIYSRLLKERI+F+ G++EDHMA L+ AQLLFLE+ENP+K+IS
Sbjct: 14  GLIPMVIEQTSRGERSYDIYSRLLKERIIFLLGEVEDHMANLVVAQLLFLESENPEKDIS 73

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGVVTAG+AIYDTMQFIKP +ST C+GQAAS  +LLL AG +G RF LPN+R++
Sbjct: 74  LYINSPGGVVTAGLAIYDTMQFIKPDVSTLCIGQAASAAALLLCAGAEGKRFCLPNSRVM 133

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG+ GQA+DIE HA++ + ++ RLN I  K+  KT +++ +  +RD+ MSA++A 
Sbjct: 134 IHQPLGGYRGQATDIEIHARETLAVRERLNNIMAKHTKKTPDQIMRDTERDNFMSATQAM 193

Query: 197 DWGVVDKVLMSR 208
           ++G++DKVL  R
Sbjct: 194 EYGLIDKVLYDR 205


>gi|225175200|ref|ZP_03729196.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dethiobacter
           alkaliphilus AHT 1]
 gi|225169376|gb|EEG78174.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dethiobacter
           alkaliphilus AHT 1]
          Length = 193

 Score =  258 bits (658), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 116/193 (60%), Positives = 158/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQTNRGER+YDIYSRLLK+RI+F+   I+D++A L+ AQLLFLE+E+P+K+I
Sbjct: 1   MNLVPMVVEQTNRGERAYDIYSRLLKDRIIFIGSPIDDNVANLVIAQLLFLESEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           ++Y+NSPGG V AG+AIYDTMQ+IKP +ST C+G AASMG++LL+AG  G RF+LPN+RI
Sbjct: 61  NIYVNSPGGSVYAGLAIYDTMQYIKPDVSTICVGLAASMGAVLLAAGADGKRFSLPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA DIE HA++I++I+ RLNEI   + GK  E++ +  DRD+ MSA +A
Sbjct: 121 MVHQPLGGAQGQAVDIEIHAKEILRIRERLNEILSGHTGKPVEQIARDTDRDYFMSAEQA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++D VL  R
Sbjct: 181 KEYGLIDGVLEKR 193


>gi|254456794|ref|ZP_05070222.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Campylobacterales bacterium GD 1]
 gi|207085586|gb|EDZ62870.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Campylobacterales bacterium GD 1]
          Length = 196

 Score =  258 bits (658), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 116/191 (60%), Positives = 159/191 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P VVE+T RGERSYDIYSRLLK+RI+ ++G++ D +A+ I AQ+LFLEAE+P+K+I
Sbjct: 1   MSYIPYVVEKTGRGERSYDIYSRLLKDRIIMLSGEVNDAVASSIVAQMLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGGVVTAGMAI+DTM +I+P I+T C+GQAASMG+ LLS+GEKG R+ALP+ARI
Sbjct: 61  YFYINSPGGVVTAGMAIFDTMNYIRPHITTICIGQAASMGAFLLSSGEKGKRYALPHARI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI   A++I+++K  LNEI  KN G++ ++VEK  DRD+ MSASEA
Sbjct: 121 MIHQPLGGAQGQATDIAIQAKEILRMKAELNEILAKNTGQSVKKVEKDTDRDNFMSASEA 180

Query: 196 CDWGVVDKVLM 206
            ++G++D+VL+
Sbjct: 181 QEYGMIDEVLV 191


>gi|270156951|ref|ZP_06185608.1| ATP-dependent Clp protease proteolytic subunit ClpP [Legionella
           longbeachae D-4968]
 gi|289164625|ref|YP_003454763.1| ATP-dependent Clp protease proteolytic subunit [Legionella
           longbeachae NSW150]
 gi|269988976|gb|EEZ95230.1| ATP-dependent Clp protease proteolytic subunit ClpP [Legionella
           longbeachae D-4968]
 gi|288857798|emb|CBJ11642.1| ATP-dependent Clp protease proteolytic subunit [Legionella
           longbeachae NSW150]
          Length = 212

 Score =  258 bits (658), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 122/192 (63%), Positives = 161/192 (83%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+EQT+RGERSYDIYSRLLKERI+F+ G++EDHMA L+ AQLLFLE+ENP+K+IS
Sbjct: 14  GLVPMVIEQTSRGERSYDIYSRLLKERIIFLLGEVEDHMANLVVAQLLFLESENPEKDIS 73

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGVVTAG+AIYDT+QFIKP +ST C+GQAAS  +LLL AG  G RF LPN+R++
Sbjct: 74  LYINSPGGVVTAGLAIYDTIQFIKPDVSTLCIGQAASAAALLLCAGADGKRFCLPNSRVM 133

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG+ GQA+DIE HA++ + ++ RLN I  K+  KT +++ +  +RD+ MSA++A 
Sbjct: 134 IHQPLGGYRGQATDIEIHARETLTVRERLNNIMAKHTKKTPDQIMRDTERDNFMSATQAV 193

Query: 197 DWGVVDKVLMSR 208
           ++G++DKVL  R
Sbjct: 194 EYGLIDKVLYDR 205


>gi|171059225|ref|YP_001791574.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Leptothrix
           cholodnii SP-6]
 gi|226706459|sp|B1Y6H3|CLPP_LEPCP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|170776670|gb|ACB34809.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Leptothrix
           cholodnii SP-6]
          Length = 202

 Score =  258 bits (658), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 112/193 (58%), Positives = 155/193 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG+VP+V+EQ+ RGER+YDIYSRLL+ER++F+ G + D  A L+ AQLLFLE+ENP K+I
Sbjct: 9   LGMVPIVIEQSGRGERAYDIYSRLLRERVIFLVGPVNDQSANLVVAQLLFLESENPDKDI 68

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S YINSPGG V+AGM+IYDTMQFIKP +ST CMG AASMG+ LL+AG KG RF+LPN++I
Sbjct: 69  SFYINSPGGSVSAGMSIYDTMQFIKPQVSTLCMGLAASMGAFLLAAGAKGKRFSLPNSKI 128

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DIE HA++I+K + +LN I  +  G++ E+++   +RD+ MS+ EA
Sbjct: 129 MIHQPLGGAQGQATDIEIHAREILKTREQLNRILAERTGQSLEKIQNDTERDYFMSSEEA 188

Query: 196 CDWGVVDKVLMSR 208
             +G++D+V+  R
Sbjct: 189 QTYGLIDQVISKR 201


>gi|289523086|ref|ZP_06439940.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503629|gb|EFD24793.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 194

 Score =  257 bits (657), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 119/191 (62%), Positives = 153/191 (80%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+V+EQT RGER+YDIYSRLLK+RI+F+   IE+H+A L+ AQ+LFLE+E+P K+I+L
Sbjct: 4   LVPIVIEQTGRGERAYDIYSRLLKDRIIFLGDVIEEHLANLVVAQMLFLESEDPDKDINL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+ IYDTMQ+IK P+ST C+GQAASM ++LL+AG KG R ALPN+R++L
Sbjct: 64  YINSPGGSVTAGLGIYDTMQYIKCPVSTICVGQAASMAAVLLAAGAKGKRIALPNSRVML 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE HA++I KI+ RLNEI   +  +  E+V K  DRD  MSA EA  
Sbjct: 124 HQPLGGVQGQATDIEIHAKEIKKIRDRLNEIIAYHTNQDIEKVAKDTDRDFFMSAEEALA 183

Query: 198 WGVVDKVLMSR 208
           +G+VDKV+  R
Sbjct: 184 YGIVDKVIEKR 194


>gi|227500202|ref|ZP_03930271.1| endopeptidase Clp [Anaerococcus tetradius ATCC 35098]
 gi|227217724|gb|EEI83028.1| endopeptidase Clp [Anaerococcus tetradius ATCC 35098]
          Length = 197

 Score =  257 bits (657), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 114/191 (59%), Positives = 156/191 (81%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP VVEQTNRGER+YDIYSRLLK+RI+F++G++ D ++ +I AQLLFLE+E+P K+I  
Sbjct: 7   LVPTVVEQTNRGERAYDIYSRLLKDRIIFLSGEVRDEISDIIIAQLLFLESEDPDKDIQF 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G+AIYDTM +IKP +ST C+GQAASM ++LLS+G KG R++LP++ I++
Sbjct: 67  YINSPGGVVTSGLAIYDTMNYIKPDVSTICIGQAASMAAVLLSSGAKGKRYSLPSSNIMI 126

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQASDI   A+ I+KIK +LN+I   N G++ +++EK  DRD  M+A EA  
Sbjct: 127 HQPSGGAQGQASDIVIQAEQIIKIKEKLNKILSDNTGQSLKKIEKDTDRDFAMTAEEALK 186

Query: 198 WGVVDKVLMSR 208
           +G++DKV+ S+
Sbjct: 187 YGLIDKVIESK 197


>gi|319943618|ref|ZP_08017899.1| ATP-dependent Clp protease proteolytic subunit [Lautropia mirabilis
           ATCC 51599]
 gi|319742851|gb|EFV95257.1| ATP-dependent Clp protease proteolytic subunit [Lautropia mirabilis
           ATCC 51599]
          Length = 262

 Score =  257 bits (657), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 113/200 (56%), Positives = 157/200 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG+VP+V+EQ+ RGER+YDIYSRLL+ER+VF+ G + D  A L  AQ+L+LE+ENP K+I
Sbjct: 58  LGMVPIVIEQSGRGERAYDIYSRLLRERVVFLVGPVMDQSANLAVAQMLYLESENPDKDI 117

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG V+AG+ I+DTMQF+KP +ST C+G AASMG+ LL+AG KG R +LPN+RI
Sbjct: 118 HFYINSPGGSVSAGLGIFDTMQFVKPDVSTLCIGFAASMGAFLLAAGAKGKRHSLPNSRI 177

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQASDIE HA++I+ +++RLN+I     G+  E +E+  +RD+ MSA EA
Sbjct: 178 MIHQPSGGAQGQASDIEIHAKEIIYLRKRLNQILADRTGQPLERIERDTERDNFMSADEA 237

Query: 196 CDWGVVDKVLMSRIDIEEKS 215
            ++G++DKV+ SR +   K+
Sbjct: 238 LEYGLIDKVMTSRTEATAKA 257


>gi|224367556|ref|YP_002601719.1| ClpP1 [Desulfobacterium autotrophicum HRM2]
 gi|259585947|sp|C0QGT0|CLPP_DESAH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|223690272|gb|ACN13555.1| ClpP1 [Desulfobacterium autotrophicum HRM2]
          Length = 205

 Score =  257 bits (657), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 115/196 (58%), Positives = 161/196 (82%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+PMVVEQ+NRGER+YDIYSRLLK+RI+F+   ++D +A LI AQLLFLE+E+P+K+I+ 
Sbjct: 3   LIPMVVEQSNRGERAYDIYSRLLKDRIIFLGSAMDDEVANLIVAQLLFLESEDPEKDINF 62

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVTAGMA+YDTMQ+IKP ++T C+GQAASMG+LLL+AG KG RF+LPN+RI++
Sbjct: 63  YINSPGGVVTAGMAVYDTMQYIKPDVATVCIGQAASMGALLLAAGAKGKRFSLPNSRIMI 122

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI+  A +I+++K  L+ I  K+ G+ ++++ +  DRD  MS  +A +
Sbjct: 123 HQPLGGAQGQASDIKIQANEILRMKEVLSGILSKHTGQNFDKISEDTDRDFFMSGDQAKE 182

Query: 198 WGVVDKVLMSRIDIEE 213
           +G+VD V+ SR ++E+
Sbjct: 183 YGLVDHVVASRDELEK 198


>gi|54294748|ref|YP_127163.1| ATP-dependent Clp protease proteolytic subunit [Legionella
           pneumophila str. Lens]
 gi|67460216|sp|Q5WVJ0|CLPP_LEGPL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|53754580|emb|CAH16064.1| ATP-dependent Clp protease proteolytic subunit [Legionella
           pneumophila str. Lens]
 gi|307610564|emb|CBX00152.1| ATP-dependent Clp protease proteolytic subunit [Legionella
           pneumophila 130b]
          Length = 214

 Score =  257 bits (657), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 122/192 (63%), Positives = 161/192 (83%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GL+PMV+EQT+RGERSYDIYSRLLKERI+F+ G++EDHMA L+ AQLLFLE+ENP+K+IS
Sbjct: 14  GLIPMVIEQTSRGERSYDIYSRLLKERIIFLLGEVEDHMANLVVAQLLFLESENPEKDIS 73

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGVVTAG+AIYDTMQFIKP +ST C+GQAAS  +LLL AG  G RF LPN+R++
Sbjct: 74  LYINSPGGVVTAGLAIYDTMQFIKPDVSTLCIGQAASAAALLLCAGADGKRFCLPNSRVM 133

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG+ GQA+DIE HA++ + ++ RLN I  K+  KT +++ +  +RD+ MSA++A 
Sbjct: 134 IHQPLGGYRGQATDIEIHARETLAVRERLNNIMAKHTKKTPDQIMRDTERDNFMSATQAM 193

Query: 197 DWGVVDKVLMSR 208
           ++G++DKVL  R
Sbjct: 194 EYGLIDKVLYDR 205


>gi|118579613|ref|YP_900863.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pelobacter
           propionicus DSM 2379]
 gi|166201831|sp|A1AN85|CLPP_PELPD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|118502323|gb|ABK98805.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pelobacter
           propionicus DSM 2379]
          Length = 199

 Score =  257 bits (656), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 117/192 (60%), Positives = 155/192 (80%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +PMVVEQ+ RGER+YDIYSRLLKERI+F+ G I+D +A LI AQLLFLEAE+P K+I LY
Sbjct: 3   IPMVVEQSGRGERAYDIYSRLLKERIIFLGGGIDDQVANLIIAQLLFLEAEDPDKDIHLY 62

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGVVT+GMAIYDTM++IK P+ST C+GQAASMG++LL+AGEKG RF+L ++RI++H
Sbjct: 63  INSPGGVVTSGMAIYDTMRYIKAPVSTICVGQAASMGAVLLAAGEKGKRFSLNHSRIMIH 122

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GGF GQA+DI  HA++I+++K  LN I     G++ E +E   DRD+ MSA+EA ++
Sbjct: 123 QPLGGFQGQATDISIHAKEILRMKEELNSILADLTGQSKERIEADTDRDYFMSATEAEEY 182

Query: 199 GVVDKVLMSRID 210
           G++D     + D
Sbjct: 183 GLIDATFTRKPD 194


>gi|321265634|ref|XP_003197533.1| ATP-dependent Clp protease proteolytic subunit [Cryptococcus gattii
           WM276]
 gi|317464013|gb|ADV25746.1| ATP-dependent Clp protease proteolytic subunit, putative
           [Cryptococcus gattii WM276]
          Length = 260

 Score =  257 bits (656), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 120/198 (60%), Positives = 157/198 (79%), Gaps = 8/198 (4%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+VVEQT RGERSYDIYSRLL+ER+VF+ G +    +TL+ AQLLFLEAE+P++ I L
Sbjct: 55  LVPIVVEQTARGERSYDIYSRLLRERVVFL-GPVNSQDSTLLTAQLLFLEAEDPKRPIKL 113

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G+AIYDTMQ+I PP+ TFCMGQAASMGSLLL+ GEKG R+AL N+ +++
Sbjct: 114 YINSPGGVVTSGLAIYDTMQYISPPVHTFCMGQAASMGSLLLAGGEKGHRYALKNSSVMI 173

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE-------VEKTLDRDHIM 190
           HQPSGG  GQASDI  HA++I++I+  L +IY ++C +  EE        EK L+RD+ M
Sbjct: 174 HQPSGGAQGQASDIALHAKEILRIRAALTDIYAEHCTRPGEERTVALDRFEKALERDYFM 233

Query: 191 SASEACDWGVVDKVLMSR 208
           ++ EA D+G+VDK++  R
Sbjct: 234 TSEEAIDFGIVDKIVTQR 251


>gi|187935559|ref|YP_001887076.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum B str. Eklund 17B]
 gi|226706444|sp|B2TPB9|CLPP_CLOBB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|187723712|gb|ACD24933.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum B str. Eklund 17B]
          Length = 199

 Score =  257 bits (656), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 116/190 (61%), Positives = 153/190 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT+RGERSYDI+SRLLKERI+ ++G++ D  + LI +QLLFLE+E+P K+I
Sbjct: 1   MSLVPMVVEQTSRGERSYDIFSRLLKERIIMLSGEVNDDSSNLIVSQLLFLESEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGG +TAGMAIYDTMQ+IKP +ST C+G AASMG+ LLS+G  G R+ALPNA I
Sbjct: 61  SIYINSPGGSITAGMAIYDTMQYIKPDVSTICVGMAASMGAFLLSSGANGKRYALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DI+ HA  I+KIK  LN+I  +N  +  E +E  ++RD+ M+A EA
Sbjct: 121 MIHQPLGGFQGQATDIQIHANRILKIKESLNKILSENTNQPLEVIEADVERDNFMTADEA 180

Query: 196 CDWGVVDKVL 205
             +G+VDKV+
Sbjct: 181 KTYGLVDKVI 190


>gi|125975222|ref|YP_001039132.1| ATP-dependent Clp protease proteolytic subunit ClpP [Clostridium
           thermocellum ATCC 27405]
 gi|256003116|ref|ZP_05428108.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           thermocellum DSM 2360]
 gi|281419196|ref|ZP_06250212.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           thermocellum JW20]
 gi|166201818|sp|A3DJ10|CLPP_CLOTH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|125715447|gb|ABN53939.1| ATP-dependent Clp protease proteolytic subunit ClpP [Clostridium
           thermocellum ATCC 27405]
 gi|255992807|gb|EEU02897.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           thermocellum DSM 2360]
 gi|281407062|gb|EFB37324.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           thermocellum JW20]
 gi|316939386|gb|ADU73420.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           thermocellum DSM 1313]
          Length = 194

 Score =  256 bits (655), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 117/193 (60%), Positives = 154/193 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQTNRGERSYDIYSRLLK+RI+ ++ +I D  A+L+ AQ+LFLEAE+P K+I
Sbjct: 1   MSLVPIVVEQTNRGERSYDIYSRLLKDRIIVLSDEINDVTASLVVAQMLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG AIYDTMQ++KP +ST C+G AASMG+ LL+AG KG RFALPN+ I
Sbjct: 61  QLYINSPGGSVTAGFAIYDTMQYVKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+ HA+ I+KIK +LN I  +  G+ +E++E+  +RD  MSA EA
Sbjct: 121 MIHQPLGGARGQATDIKIHAEQIIKIKNKLNRILSERTGQPFEKIERDTERDFFMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD+V+  R
Sbjct: 181 KAYGIVDEVMERR 193


>gi|253701609|ref|YP_003022798.1| ATP-dependent Clp protease proteolytic subunit [Geobacter sp. M21]
 gi|259585955|sp|C6E2T0|CLPP_GEOSM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|251776459|gb|ACT19040.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacter sp.
           M21]
          Length = 199

 Score =  256 bits (655), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 115/192 (59%), Positives = 156/192 (81%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+VVEQT RGERSYDIYSRLLK+RI+F+ G I+D++A L+ AQLLFLEAE+P K+I L
Sbjct: 2   LVPIVVEQTGRGERSYDIYSRLLKDRIIFLGGGIDDNVANLVIAQLLFLEAEDPDKDIHL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVTAGMAIYDTM++IK P+ST C+GQAASMG+ LLS GEKG R++L N+RI++
Sbjct: 62  YINSPGGVVTAGMAIYDTMRYIKAPVSTICVGQAASMGAFLLSGGEKGKRYSLVNSRIMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQA+DI  HA++I+++K  LN +  ++ G++ E+V    +RD+ MS  EA +
Sbjct: 122 HQPLGGFQGQATDIHIHAKEILRMKDELNALLAEHTGQSVEKVAADTERDYFMSGEEAKN 181

Query: 198 WGVVDKVLMSRI 209
           +G++D ++   +
Sbjct: 182 YGIIDAIVTRNV 193


>gi|146295915|ref|YP_001179686.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|166201809|sp|A4XHW0|CLPP_CALS8 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|145409491|gb|ABP66495.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 195

 Score =  256 bits (655), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 118/192 (61%), Positives = 154/192 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVP+V+EQTNRGER+YDIYSRLLK+RIV ++G+I D +A+LI AQLLFLEAE+P K+I 
Sbjct: 3   ALVPIVIEQTNRGERAYDIYSRLLKDRIVILSGEITDDIASLIVAQLLFLEAEDPDKDIY 62

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAG AIYDT+Q+IKP +ST C+G AASMG+ LL+AG KG RFALPN+ I+
Sbjct: 63  LYINSPGGSVTAGFAIYDTIQYIKPDVSTICVGMAASMGAFLLAAGAKGKRFALPNSEIM 122

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA+DI+ HA+ I+KIK+R+N I  +  G+  E +E+  +RD  M+A EA 
Sbjct: 123 IHQPIGGVRGQATDIKIHAEWILKIKQRINRILAERTGQPIEVIERDTERDFFMTAEEAL 182

Query: 197 DWGVVDKVLMSR 208
            +G++DKV+  R
Sbjct: 183 KYGIIDKVIERR 194


>gi|148381180|ref|YP_001255721.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum A str. ATCC 3502]
 gi|153933152|ref|YP_001385555.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum A str. ATCC 19397]
 gi|153934525|ref|YP_001388961.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum A str. Hall]
 gi|153939192|ref|YP_001392582.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum F str. Langeland]
 gi|168179119|ref|ZP_02613783.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum NCTC 2916]
 gi|168183548|ref|ZP_02618212.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum Bf]
 gi|170754567|ref|YP_001782870.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum B1 str. Okra]
 gi|226950659|ref|YP_002805750.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum A2 str. Kyoto]
 gi|237796687|ref|YP_002864239.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum Ba4 str. 657]
 gi|166201814|sp|A7FYI2|CLPP_CLOB1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166201815|sp|A5I6W1|CLPP_CLOBH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166201816|sp|A7GIH2|CLPP_CLOBL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706445|sp|B1IND7|CLPP_CLOBK RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|254763786|sp|C1FLA6|CLPP_CLOBJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|148290664|emb|CAL84793.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           botulinum A str. ATCC 3502]
 gi|152929196|gb|ABS34696.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum A str. ATCC 19397]
 gi|152930439|gb|ABS35938.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum A str. Hall]
 gi|152935088|gb|ABS40586.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum F str. Langeland]
 gi|169119779|gb|ACA43615.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum B1 str. Okra]
 gi|182670165|gb|EDT82141.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum NCTC 2916]
 gi|182673367|gb|EDT85328.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum Bf]
 gi|226842960|gb|ACO85626.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum A2 str. Kyoto]
 gi|229261301|gb|ACQ52334.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum Ba4 str. 657]
 gi|295320566|gb|ADG00944.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum F str. 230613]
 gi|322807545|emb|CBZ05120.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           botulinum H04402 065]
          Length = 194

 Score =  256 bits (655), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 116/190 (61%), Positives = 154/190 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQTNRGERSYDIYSRLLK+RI+ ++ ++ D  A+LI AQLLFLEAE+P K+I
Sbjct: 1   MSLVPVVVEQTNRGERSYDIYSRLLKDRIIMLSEEVNDTTASLIVAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +T+GMAIYDTMQ+IKP +ST C+G AASMG+ LL+AG KG R+ALPN+ +
Sbjct: 61  HLYINSPGGSITSGMAIYDTMQYIKPDVSTICVGMAASMGAFLLAAGAKGKRYALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DI  HA+ I+K+K++LN I     GK  E+VE   +RDH +SA EA
Sbjct: 121 MIHQPLGGFRGQATDIGIHAERILKMKKKLNTILSDRTGKPLEQVELDTERDHFLSAEEA 180

Query: 196 CDWGVVDKVL 205
            ++G++D+V+
Sbjct: 181 KEYGLIDEVI 190


>gi|187776850|ref|ZP_02993323.1| hypothetical protein CLOSPO_00389 [Clostridium sporogenes ATCC
           15579]
 gi|187775509|gb|EDU39311.1| hypothetical protein CLOSPO_00389 [Clostridium sporogenes ATCC
           15579]
          Length = 194

 Score =  256 bits (655), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 116/190 (61%), Positives = 154/190 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQTNRGERSYDIYSRLLK+RI+ ++ ++ D  A+LI AQLLFLEAE+P K+I
Sbjct: 1   MSLVPVVVEQTNRGERSYDIYSRLLKDRIIMLSEEVNDTTASLIVAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +T+GMAIYDTMQ+IKP +ST C+G AASMG+ LL+AG KG R+ALPN+ +
Sbjct: 61  YLYINSPGGSITSGMAIYDTMQYIKPDVSTICVGMAASMGAFLLAAGAKGKRYALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DI  HA+ I+K+K++LN I     GK  E+VE   +RDH +SA EA
Sbjct: 121 MIHQPLGGFRGQATDIGIHAERILKMKKKLNTILSDRTGKPLEQVELDTERDHFLSAEEA 180

Query: 196 CDWGVVDKVL 205
            ++G++D+V+
Sbjct: 181 KEYGLIDEVI 190


>gi|126668931|ref|ZP_01739872.1| ATP-dependent Clp protease proteolytic subunit [Marinobacter sp.
           ELB17]
 gi|126626594|gb|EAZ97250.1| ATP-dependent Clp protease proteolytic subunit [Marinobacter sp.
           ELB17]
          Length = 211

 Score =  256 bits (655), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 113/193 (58%), Positives = 150/193 (77%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMV+EQT RGERS+DIYSRLLKER++F+ G +EDHMA L+ AQLLFLE+ENP K+I 
Sbjct: 16  ALVPMVIEQTARGERSFDIYSRLLKERVIFMVGPVEDHMANLVVAQLLFLESENPDKDIH 75

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG V+AGM+IYDTMQFIKP ++T C+GQAASMG+ LL+ G  G R  LPN+R++
Sbjct: 76  LYINSPGGSVSAGMSIYDTMQFIKPDVATLCVGQAASMGAFLLAGGAAGKRACLPNSRVM 135

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG+ GQA+DIE H ++I+KI+  LN I   + G+  E + +  DRD+ M  ++A 
Sbjct: 136 IHQPLGGYQGQATDIEIHTREILKIRHTLNSILAHHTGQDLETISRDTDRDNFMDPTQAK 195

Query: 197 DWGVVDKVLMSRI 209
            +G++D VL  R+
Sbjct: 196 AYGLIDSVLDKRV 208


>gi|158321199|ref|YP_001513706.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Alkaliphilus
           oremlandii OhILAs]
 gi|167008645|sp|A8MIS8|CLPP_ALKOO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|158141398|gb|ABW19710.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Alkaliphilus
           oremlandii OhILAs]
          Length = 195

 Score =  256 bits (655), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 116/192 (60%), Positives = 151/192 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQTNRGERSYDIYSRLLKERI+F++ ++ D  A+L+ AQLLFLE+E+P K+I
Sbjct: 1   MALVPMVVEQTNRGERSYDIYSRLLKERIIFLSDEVNDATASLVVAQLLFLESEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +TAGMAIYDTM +IKP +ST C+G AASMG+ LL+AG+KG RFALPNA I
Sbjct: 61  QLYINSPGGSITAGMAIYDTMNYIKPDVSTICIGMAASMGAFLLTAGQKGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA DI  H + I+K++  LN+I  +  G+  E+V+K  DRD  M A EA
Sbjct: 121 MIHQPLGGTRGQAEDIRIHTERILKMRETLNKIIAERTGQPLEKVQKDTDRDFFMEAEEA 180

Query: 196 CDWGVVDKVLMS 207
             +G++D+V+ +
Sbjct: 181 RAYGIIDEVITT 192


>gi|301091655|ref|XP_002896007.1| ATP-dependent Clp protease proteolytic subunit, putative
           [Phytophthora infestans T30-4]
 gi|262095668|gb|EEY53720.1| ATP-dependent Clp protease proteolytic subunit, putative
           [Phytophthora infestans T30-4]
          Length = 221

 Score =  256 bits (655), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 115/202 (56%), Positives = 157/202 (77%)

Query: 7   AKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
           A++    +   LVPMV+EQ+ RGER +DIYSRLLKERIVFV G + D MA+L+ AQLLFL
Sbjct: 11  ARRGFHSIMNSLVPMVLEQSPRGERVFDIYSRLLKERIVFVHGPVNDDMASLVTAQLLFL 70

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E+ENP+K++ +YINSPGG+V++G+AIYDTMQ+I+P ++T CMGQAASMGSLLL+ G  G 
Sbjct: 71  ESENPEKDVHMYINSPGGIVSSGLAIYDTMQYIQPKVNTLCMGQAASMGSLLLAGGASGC 130

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           R ALPNARI++HQPSGG  G ASDI   A++I+K++ RLN +Y  + GK  + +E+ +DR
Sbjct: 131 RSALPNARIMIHQPSGGAQGMASDIAIQAEEIIKLRTRLNGLYASHTGKPLKVIEQAMDR 190

Query: 187 DHIMSASEACDWGVVDKVLMSR 208
           D  M   EA ++G+VD ++ +R
Sbjct: 191 DLFMDPREAQEFGIVDSIIANR 212


>gi|298369365|ref|ZP_06980683.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria sp.
           oral taxon 014 str. F0314]
 gi|298283368|gb|EFI24855.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria sp.
           oral taxon 014 str. F0314]
          Length = 206

 Score =  256 bits (654), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 123/197 (62%), Positives = 161/197 (81%), Gaps = 2/197 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ+ RGER++DIYSRLLKERIVF+ G ++D  A L+ AQLLFLE+ENP K+I  
Sbjct: 9   LVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVDDQSANLVVAQLLFLESENPDKDIFF 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AGM+IYDTM FIKP +ST C+GQAASMG+ LLSAGEKG RFALPN+RI++
Sbjct: 69  YINSPGGSVSAGMSIYDTMNFIKPNVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMI 128

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG SGQASDIE HA++++K+K +LN +  K+CG+   ++E+  DRD+ MSA EA
Sbjct: 129 HQPLISGGLSGQASDIEIHAKELLKLKEKLNRLLAKHCGRDLADLERDTDRDNYMSAEEA 188

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G+VD+VL +R  ++
Sbjct: 189 KEYGLVDQVLENRASMQ 205


>gi|242015536|ref|XP_002428409.1| ATP-dependent Clp protease proteolytic subunit, putative [Pediculus
           humanus corporis]
 gi|212513021|gb|EEB15671.1| ATP-dependent Clp protease proteolytic subunit, putative [Pediculus
           humanus corporis]
          Length = 252

 Score =  256 bits (654), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 112/199 (56%), Positives = 164/199 (82%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P+V+EQT RGER+YDIYSRLLKERI+ V GQI D +++++ AQLLFL++EN +K + +
Sbjct: 41  LIPVVIEQTGRGERAYDIYSRLLKERIICVMGQIHDELSSVVIAQLLFLQSENSKKPVHM 100

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+ IYDTMQ+I PP++T+C+GQA SM SLLL+AG  GMR ALPNARI++
Sbjct: 101 YINSPGGSVTAGLGIYDTMQYILPPVATWCVGQACSMASLLLAAGASGMRHALPNARIMI 160

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQA+DI+  A++I+K+K+++N +YVK+ G + E++E++++RD  M+ S+A +
Sbjct: 161 HQPSGGVQGQATDIQIQAEEILKLKKQINHLYVKHTGLSIEKIEQSMERDKFMNPSDAKE 220

Query: 198 WGVVDKVLMSRIDIEEKSK 216
           +G++DK+L     + EK++
Sbjct: 221 FGIIDKILNHPPKLGEKAE 239


>gi|256828014|ref|YP_003156742.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Desulfomicrobium baculatum DSM 4028]
 gi|256577190|gb|ACU88326.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Desulfomicrobium baculatum DSM 4028]
          Length = 198

 Score =  256 bits (654), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 114/191 (59%), Positives = 154/191 (80%)

Query: 22  VVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS 81
           V+E T RGER YDIYSRLLK+RIV +   I+DH+A  ICAQLLFLE+ENP+K+I +YINS
Sbjct: 8   VIENTGRGERMYDIYSRLLKDRIVLLGTPIDDHVANSICAQLLFLESENPEKQIYMYINS 67

Query: 82  PGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
           PGG VTAGMAIYDTMQ+I  P++T C+GQAASM ++LL+AGEKGMR+ LP++RI++HQP 
Sbjct: 68  PGGAVTAGMAIYDTMQYISAPVATLCIGQAASMAAVLLAAGEKGMRYTLPHSRIMIHQPM 127

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
           GGF GQA+DI   A++I++++  LN I   + G+T E+VE+  +RD+ MS  EAC +G++
Sbjct: 128 GGFQGQATDIAIQAKEIIRLRGELNGILANHTGQTLEKVEQDTERDYFMSGEEACAYGLI 187

Query: 202 DKVLMSRIDIE 212
           D+VL SR ++E
Sbjct: 188 DQVLASRKELE 198


>gi|254520131|ref|ZP_05132187.1| endopeptidase Clp [Clostridium sp. 7_2_43FAA]
 gi|226913880|gb|EEH99081.1| endopeptidase Clp [Clostridium sp. 7_2_43FAA]
          Length = 198

 Score =  256 bits (654), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 114/190 (60%), Positives = 153/190 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT+RGERSYDI+SRLLK+RI+ ++G+I D  + L+ +QLLFLE+E+P K+I
Sbjct: 1   MSLVPMVVEQTSRGERSYDIFSRLLKDRIIMLSGEINDTTSNLVVSQLLFLESEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +TAGMAIYDTMQ+IKP +ST C+G AASMGS LLS+G KG RF LPN+ I
Sbjct: 61  HLYINSPGGSITAGMAIYDTMQYIKPDVSTICIGMAASMGSFLLSSGAKGKRFVLPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+D + HA+ I+KIK  LN I  +N  +  E+++  ++RD+ M+A EA
Sbjct: 121 MIHQPLGGFQGQATDFDIHARRIIKIKESLNRILSENTNQPLEKIKTDVERDYFMTAEEA 180

Query: 196 CDWGVVDKVL 205
            ++G+VDKV+
Sbjct: 181 MNYGLVDKVI 190


>gi|219681825|ref|YP_002468211.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
           str. 5A (Acyrthosiphon pisum)]
 gi|219682380|ref|YP_002468764.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
           str. Tuc7 (Acyrthosiphon pisum)]
 gi|257471527|ref|ZP_05635526.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
           str. LSR1 (Acyrthosiphon pisum)]
 gi|219622113|gb|ACL30269.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
           str. Tuc7 (Acyrthosiphon pisum)]
 gi|219624668|gb|ACL30823.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
           str. 5A (Acyrthosiphon pisum)]
 gi|311086200|gb|ADP66282.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
           str. LL01 (Acyrthosiphon pisum)]
 gi|311086777|gb|ADP66858.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
           str. TLW03 (Acyrthosiphon pisum)]
 gi|311087365|gb|ADP67445.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
           str. JF99 (Acyrthosiphon pisum)]
 gi|311087863|gb|ADP67942.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
           str. JF98 (Acyrthosiphon pisum)]
          Length = 208

 Score =  256 bits (654), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 112/201 (55%), Positives = 162/201 (80%)

Query: 8   KKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           K + +  +   +PMVVEQ +RGERSYDIYSRLLKERI+F+TG IED+MA  I AQ+LFLE
Sbjct: 7   KNNKKSSYATFIPMVVEQHSRGERSYDIYSRLLKERIIFITGAIEDNMANNIVAQILFLE 66

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AENP+K+I LYINSPGG++T+GM+IYDTMQF+KP IST C+GQA SM +LLL++G KG R
Sbjct: 67  AENPEKDIFLYINSPGGIITSGMSIYDTMQFVKPEISTICLGQACSMAALLLTSGAKGKR 126

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           F LPN+++++HQP GG+ GQASDI  HA++I+++K++LN++   + G++ +++ K  +RD
Sbjct: 127 FCLPNSKVMIHQPLGGYQGQASDIAIHAREIMEMKKKLNKLMSFHTGQSIKKINKDTERD 186

Query: 188 HIMSASEACDWGVVDKVLMSR 208
             +SA+++  +G++D +L  R
Sbjct: 187 CFLSANQSIKYGLIDFILSQR 207


>gi|160898086|ref|YP_001563668.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Delftia
           acidovorans SPH-1]
 gi|160363670|gb|ABX35283.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Delftia
           acidovorans SPH-1]
          Length = 202

 Score =  256 bits (654), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 112/193 (58%), Positives = 154/193 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG++PMV+EQ+ RGERSYDIYSRLLK+R++F+ G + D  A L+ AQLLFLE+ENP K+I
Sbjct: 9   LGMIPMVIEQSGRGERSYDIYSRLLKDRVIFLVGPVNDQTANLVVAQLLFLESENPDKDI 68

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S YINSPGG V+AG+AI+DTM FIKP +ST C G AASMG+ LL+AG KG RFALPN+++
Sbjct: 69  SFYINSPGGSVSAGLAIFDTMNFIKPDVSTLCTGIAASMGAFLLAAGTKGKRFALPNSQV 128

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE HA++I+K + RLN+I  +  G+  E+++   +RD+ +SA EA
Sbjct: 129 MIHQPLGGMQGQATEIEIHAREILKTRERLNKILAERTGQPLEKIQHDTERDYFLSAEEA 188

Query: 196 CDWGVVDKVLMSR 208
            D+G+VD+V+  R
Sbjct: 189 KDYGLVDQVINKR 201


>gi|46579746|ref|YP_010554.1| ATP-dependent Clp protease proteolytic subunit [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120602778|ref|YP_967178.1| ATP-dependent Clp protease proteolytic subunit [Desulfovibrio
           vulgaris DP4]
 gi|60389677|sp|Q72CE8|CLPP_DESVH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166201819|sp|A1VE85|CLPP_DESVV RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|46449161|gb|AAS95813.1| ATP-dependent Clp protease, proteolytic subunit [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120563007|gb|ABM28751.1| ATP-dependent Clp protease proteolytic subunit ClpP [Desulfovibrio
           vulgaris DP4]
 gi|311233536|gb|ADP86390.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
           vulgaris RCH1]
          Length = 201

 Score =  256 bits (654), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 115/190 (60%), Positives = 154/190 (81%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP+V+E T R ER+YDIYSRLLK+RIV +   I+D +A+LICAQLLFLE+ENP+KEI +Y
Sbjct: 3   VPIVIESTGRAERAYDIYSRLLKDRIVLLGTPIDDQVASLICAQLLFLESENPEKEIHMY 62

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAGMAIYDTMQ+I  P+ST CMGQAASMG+LLL+AG  G+RF+LP++RI++H
Sbjct: 63  INSPGGSVTAGMAIYDTMQYINSPVSTLCMGQAASMGALLLAAGAPGLRFSLPHSRIMIH 122

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGGF GQA+DI+  A++++++K+ LN I  ++ GK  E+V    +RD+ M   EA  +
Sbjct: 123 QPSGGFQGQATDIDIQAREVLRLKQSLNAIMSQHTGKPLEQVALDTERDYFMGPEEAQAY 182

Query: 199 GVVDKVLMSR 208
           G++D+VL SR
Sbjct: 183 GLIDRVLTSR 192


>gi|60389777|sp|Q891J7|CLPP_CLOTE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
          Length = 194

 Score =  256 bits (654), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 116/193 (60%), Positives = 155/193 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQTNRGERSYDIYSRLLK+RI+ ++ Q+ D  A+LI AQLLFLEAE+P K+I
Sbjct: 1   MSLVPVVVEQTNRGERSYDIYSRLLKDRIIMLSDQVNDVTASLIVAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +T+GMAIYDTMQ+IKP +ST C+G AASMG+ LL+AG KG RFALPN+ I
Sbjct: 61  FLYINSPGGSITSGMAIYDTMQYIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DI  HA  I+KIK+ LN I  +  G+  E +++  +RD+ M A++A
Sbjct: 121 MIHQPLGGFQGQATDIGIHADRILKIKQNLNSILSEKTGQPLEVIQRDTERDNFMDANQA 180

Query: 196 CDWGVVDKVLMSR 208
            D+G++D+V++ +
Sbjct: 181 KDYGLIDEVMVKK 193


>gi|168031792|ref|XP_001768404.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680329|gb|EDQ66766.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 201

 Score =  256 bits (654), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 117/188 (62%), Positives = 155/188 (82%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MV+E T+RGER+YDI+SRLLKERIV + G I D  A+L+ AQLL+LE+E+P K I LYIN
Sbjct: 1   MVIEHTSRGERAYDIFSRLLKERIVCIHGPISDDTASLVVAQLLYLESEHPDKPIHLYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGGVVTAG+AIYDTMQ+I+ P+ST C+GQAASMGSLLL+AG+ G R +LPNAR+++HQP
Sbjct: 61  SPGGVVTAGLAIYDTMQYIRSPVSTLCVGQAASMGSLLLAAGQPGERRSLPNARVMIHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
           SGG SGQASDI   A++I+ ++ RL+ +YVK+ G TYE++E +++RDH MS  EA  +G+
Sbjct: 121 SGGASGQASDIAIQAREILDMRARLSRLYVKHTGHTYEKIESSMERDHFMSPEEAKQFGL 180

Query: 201 VDKVLMSR 208
           VD+V+  R
Sbjct: 181 VDEVIERR 188


>gi|121611285|ref|YP_999092.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Verminephrobacter eiseniae EF01-2]
 gi|166214720|sp|A1WR17|CLPP_VEREI RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|121555925|gb|ABM60074.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Verminephrobacter eiseniae EF01-2]
          Length = 202

 Score =  256 bits (654), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 111/193 (57%), Positives = 155/193 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG++PMV+EQ+ RGERSYDIYSRLLKER++F+ G + D  A L+ AQLLFLE+ENP K+I
Sbjct: 9   LGMIPMVIEQSGRGERSYDIYSRLLKERVIFLVGPVNDQTANLVVAQLLFLESENPDKDI 68

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S YINSPGG V+AGMAI+DTM FIKP +ST C G AASMG+ LL+AG KG RFALPN+++
Sbjct: 69  SFYINSPGGSVSAGMAIFDTMNFIKPDVSTLCTGMAASMGAFLLAAGAKGKRFALPNSKV 128

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE HA++I+K + +LN+I  +  G+  E++++  +RD+ +SA E+
Sbjct: 129 MIHQPLGGMQGQATEIEIHAREILKTREQLNKILAERTGQPLEKIQRDTERDYFLSADES 188

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD+V+  R
Sbjct: 189 REYGLVDQVIHRR 201


>gi|91076194|ref|XP_971998.1| PREDICTED: similar to caseinolytic protease, ATP-dependent,
           proteolytic subunit homolog [Tribolium castaneum]
 gi|270014730|gb|EFA11178.1| hypothetical protein TcasGA2_TC004785 [Tribolium castaneum]
          Length = 234

 Score =  256 bits (654), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 116/192 (60%), Positives = 156/192 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
            GLVP+V+EQT RGERSYDIYSRLLKERI+ + G I D M++LI AQLLFL++E+  K I
Sbjct: 22  FGLVPIVIEQTGRGERSYDIYSRLLKERIICLMGPINDPMSSLIVAQLLFLQSESTNKPI 81

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG VTAG+ IYDTMQ+I PPI+T+C+GQAASM SLLL+AG  GMR +LP+ARI
Sbjct: 82  HMYINSPGGSVTAGLGIYDTMQYILPPIATWCVGQAASMASLLLAAGSPGMRHSLPHARI 141

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+DI+  A++I+K+K ++N +YVK+ G   E++E++++RD  MS  EA
Sbjct: 142 MIHQPSGGAQGQATDIKIQAEEILKLKSQINNLYVKHTGLALEKIERSMERDMFMSPVEA 201

Query: 196 CDWGVVDKVLMS 207
             +G++DK+L S
Sbjct: 202 QSFGIIDKILTS 213


>gi|170760538|ref|YP_001788551.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum A3 str. Loch Maree]
 gi|226706446|sp|B1L1D7|CLPP_CLOBM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|169407527|gb|ACA55938.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 194

 Score =  256 bits (653), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 116/190 (61%), Positives = 153/190 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQTNRGERSYDIYSRLLK+RI+ ++ ++ D  A+LI AQLLFLEAE+P K+I
Sbjct: 1   MSLVPVVVEQTNRGERSYDIYSRLLKDRIIMLSEEVNDTTASLIVAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +T+GMAIYDTMQ+IKP +ST C+G AASMG+ LL AG KG R+ALPN+ +
Sbjct: 61  HLYINSPGGSITSGMAIYDTMQYIKPDVSTICVGMAASMGAFLLVAGAKGKRYALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DI  HA+ I+K+K++LN I     GK  E+VE   +RDH +SA EA
Sbjct: 121 MIHQPLGGFQGQATDIGIHAERILKMKKKLNTILSDRTGKPLEQVELDTERDHFLSAEEA 180

Query: 196 CDWGVVDKVL 205
            ++G++D+V+
Sbjct: 181 KEYGLIDEVI 190


>gi|164686707|ref|ZP_02210735.1| hypothetical protein CLOBAR_00302 [Clostridium bartlettii DSM
           16795]
 gi|164604097|gb|EDQ97562.1| hypothetical protein CLOBAR_00302 [Clostridium bartlettii DSM
           16795]
          Length = 193

 Score =  256 bits (653), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 117/190 (61%), Positives = 155/190 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP VVEQT RGER+YDIYSRLLK+RI+F++ ++ D  A+L+ AQLLFLEAE+P K+I
Sbjct: 1   MALVPTVVEQTGRGERAYDIYSRLLKDRIIFLSDEVNDTTASLVVAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMAIYDTMQ+IKP +ST C+G AASMG+ LL+AG KG RFALPN+ I
Sbjct: 61  HLYINSPGGSVTAGMAIYDTMQYIKPDVSTICIGMAASMGAFLLNAGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DIE HA+ I+KIK RLN+I  +  G+  E++++  +RD+ MSA EA
Sbjct: 121 MIHQPLGGAKGQATDIEIHAKWILKIKERLNKILSERTGQPIEKIQEDTERDNFMSAQEA 180

Query: 196 CDWGVVDKVL 205
            ++G++D+V+
Sbjct: 181 KEYGLIDEVI 190


>gi|213580888|ref|ZP_03362714.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-0664]
          Length = 175

 Score =  256 bits (653), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 115/168 (68%), Positives = 147/168 (87%), Gaps = 2/168 (1%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D+    + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--ERDNLAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+
Sbjct: 119 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNEL 166


>gi|229916596|ref|YP_002885242.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Exiguobacterium sp. AT1b]
 gi|229468025|gb|ACQ69797.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Exiguobacterium sp. AT1b]
          Length = 191

 Score =  256 bits (653), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 115/188 (61%), Positives = 152/188 (80%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P V+EQT RGER+YDIYSRLLK+RI+ +   I+D++A  I AQLLFL AE+P+K+ISL
Sbjct: 2   LIPTVIEQTGRGERAYDIYSRLLKDRIILLGSAIDDNVANSIVAQLLFLAAEDPEKDISL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TAGMAIYDTM FIKP +ST C+G AASMG+ LL AGEKG RFALPNA I++
Sbjct: 62  YINSPGGSITAGMAIYDTMNFIKPNVSTICIGMAASMGAFLLQAGEKGKRFALPNAEIMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI+ HA+ I+K++ +LN+I  +N G+  E +E+  +RD+ M+A +A D
Sbjct: 122 HQPLGGTQGQASDIKIHAERIIKMREKLNQIMAENTGQPLEVIERDTERDYFMAADQAKD 181

Query: 198 WGVVDKVL 205
           +G++DKV+
Sbjct: 182 YGLIDKVM 189


>gi|58262368|ref|XP_568594.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134118898|ref|XP_771952.1| hypothetical protein CNBN1320 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50254556|gb|EAL17305.1| hypothetical protein CNBN1320 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57230768|gb|AAW47077.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 260

 Score =  256 bits (653), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 119/198 (60%), Positives = 157/198 (79%), Gaps = 8/198 (4%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+VVEQT RGERSYDIYSRLLKER++F+ G +    +TL+ AQLLFLEAE+P++ I L
Sbjct: 55  LVPIVVEQTARGERSYDIYSRLLKERVIFL-GPVNSQDSTLLTAQLLFLEAEDPKRPIKL 113

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G+AIYDTMQ+I PP+ TFCMGQAASMGSLLL+ GEKG R+AL N+ +++
Sbjct: 114 YINSPGGVVTSGLAIYDTMQYISPPVHTFCMGQAASMGSLLLAGGEKGHRYALKNSSVMI 173

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE-------VEKTLDRDHIM 190
           HQPSGG  GQASDI  HA++I++I+  L +IY ++C +  EE        EK L+RD+ M
Sbjct: 174 HQPSGGAQGQASDIALHAKEILRIRAALTDIYAEHCTRPGEERSAALDRFEKALERDYFM 233

Query: 191 SASEACDWGVVDKVLMSR 208
           ++ EA ++G+VDK++  R
Sbjct: 234 TSEEAVEFGIVDKIVTQR 251


>gi|15617073|ref|NP_240286.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
           str. APS (Acyrthosiphon pisum)]
 gi|11386686|sp|P57547|CLPP_BUCAI RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|25289846|pir||D84985 endopeptidase Clp (EC 3.4.21.92) [imported] - Buchnera sp.  (strain
           APS)
 gi|10039138|dbj|BAB13172.1| ATP-dependent clp protease proteolytic subunit [Buchnera aphidicola
           str. APS (Acyrthosiphon pisum)]
          Length = 208

 Score =  256 bits (653), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 112/201 (55%), Positives = 161/201 (80%)

Query: 8   KKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           K +    +   +PMVVEQ +RGERSYDIYSRLLKERI+F+TG IED+MA  I AQ+LFLE
Sbjct: 7   KNNKTSSYATFIPMVVEQHSRGERSYDIYSRLLKERIIFITGAIEDNMANNIVAQILFLE 66

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AENP+K+I LYINSPGG++T+GM+IYDTMQF+KP IST C+GQA SM +LLL++G KG R
Sbjct: 67  AENPEKDIFLYINSPGGIITSGMSIYDTMQFVKPEISTICLGQACSMAALLLTSGAKGKR 126

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           F LPN+++++HQP GG+ GQASDI  HA++I+++K++LN++   + G++ +++ K  +RD
Sbjct: 127 FCLPNSKVMIHQPLGGYQGQASDIAIHAREIMEMKKKLNKLMSFHTGQSIKKINKDTERD 186

Query: 188 HIMSASEACDWGVVDKVLMSR 208
             +SA+++  +G++D +L  R
Sbjct: 187 CFLSANQSIKYGLIDFILSQR 207


>gi|47216266|emb|CAG05962.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 249

 Score =  256 bits (653), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 118/189 (62%), Positives = 156/189 (82%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P+VVEQT RGER+YDIYSRLL+ERI+ V G I+D +A+LI AQLLFL++E+  K I +
Sbjct: 30  LIPIVVEQTGRGERAYDIYSRLLRERIICVMGPIDDSVASLIIAQLLFLQSESNNKPIHM 89

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVTAG+AIYDTMQ+I  PIST+C+GQAASMGSLLL+AG  GMR +LPNAR+++
Sbjct: 90  YINSPGGVVTAGLAIYDTMQYILNPISTWCVGQAASMGSLLLAAGTAGMRHSLPNARVMI 149

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQA+DI   A++I+K+KR++N IY K+ G+  E +E  ++RD  MS  EA D
Sbjct: 150 HQPSGGARGQATDIAIQAEEILKLKRQINTIYAKHTGQPLETIESIMERDRYMSPMEAQD 209

Query: 198 WGVVDKVLM 206
           +G++D+VL+
Sbjct: 210 FGLIDRVLV 218


>gi|289548353|ref|YP_003473341.1| ATP-dependent Clp protease proteolytic subunit ClpP [Thermocrinis
           albus DSM 14484]
 gi|289181970|gb|ADC89214.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermocrinis
           albus DSM 14484]
          Length = 199

 Score =  255 bits (652), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 117/197 (59%), Positives = 160/197 (81%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           +++   LVP+V+EQT RGER+YDIYSRLL++RIV +   I+DH+A LI AQLLFLEA++P
Sbjct: 2   KEILNQLVPIVIEQTPRGERAYDIYSRLLQDRIVLLGYPIDDHVANLIVAQLLFLEAQDP 61

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+I +YINSPGG VTAGMAIYDTMQ+IKP + T C+GQAASM ++LL+AG KG R++LP
Sbjct: 62  EKDIYMYINSPGGSVTAGMAIYDTMQYIKPDVVTICIGQAASMAAVLLAAGAKGKRYSLP 121

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           ++RI++HQP GG SGQA+DI  HA++I +IK  LNEI  K+ G+   +VE+ ++RD+ MS
Sbjct: 122 HSRIMIHQPMGGISGQATDIIIHAEEIKRIKHMLNEIIAKHTGQPLSKVEQDVERDYFMS 181

Query: 192 ASEACDWGVVDKVLMSR 208
           A EA ++G+VDKV+  R
Sbjct: 182 AYEAMEYGIVDKVIEKR 198


>gi|125591043|gb|EAZ31393.1| hypothetical protein OsJ_15521 [Oryza sativa Japonica Group]
          Length = 221

 Score =  255 bits (652), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 115/188 (61%), Positives = 152/188 (80%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MV+E T+RGER+YDI+SRLLKERIV + G I D  A+L+ AQLLFLE+ENP K + LYIN
Sbjct: 1   MVIEHTSRGERAYDIFSRLLKERIVCIHGPITDDTASLVVAQLLFLESENPAKPVHLYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGGVVTAG+AIYDTMQ+I+ P++T C+GQAASM SLLL+AG +G R ALPNAR+++HQP
Sbjct: 61  SPGGVVTAGLAIYDTMQYIRSPVTTLCIGQAASMASLLLAAGARGERRALPNARVMIHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
           SGG SGQASDI  HA++I+K++ RLN+IY K+  +  + +E+ ++RD  M   EA DWG+
Sbjct: 121 SGGASGQASDIAIHAKEILKVRDRLNKIYAKHTSQAIDRIEQCMERDMFMDPEEAHDWGL 180

Query: 201 VDKVLMSR 208
           +D+V+  R
Sbjct: 181 IDEVIEHR 188


>gi|319941575|ref|ZP_08015901.1| ATP-dependent Clp protease proteolytic subunit [Sutterella
           wadsworthensis 3_1_45B]
 gi|319804945|gb|EFW01787.1| ATP-dependent Clp protease proteolytic subunit [Sutterella
           wadsworthensis 3_1_45B]
          Length = 196

 Score =  255 bits (652), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 112/196 (57%), Positives = 160/196 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVE + R ERS+DIYSRLL++RI+F+T ++ D  A+LI AQLLFLE+E+P K+I
Sbjct: 1   MSLVPIVVESSGRSERSFDIYSRLLRDRIIFLTTEVNDQTASLIVAQLLFLESEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG V+AGM+I+DTM+FI+P ++T C+G AASMG+ LL+AGEKG R+ALP++RI
Sbjct: 61  SLYINSPGGSVSAGMSIFDTMRFIRPKVNTICLGMAASMGAFLLAAGEKGKRYALPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASD+E  A+ ++ IKR++NE+     G++Y+E+ +  DRD+ MSA EA
Sbjct: 121 MIHQPLGGAEGQASDVEIRARQLLLIKRQMNELMAGFTGRSYDELVRDTDRDNFMSAQEA 180

Query: 196 CDWGVVDKVLMSRIDI 211
            ++G++D+VL SR D+
Sbjct: 181 LEYGLIDRVLTSRADL 196


>gi|56207353|emb|CAI20832.1| novel protein similar to human and mouse ClpP caseinolytic
           protease, ATP-dependent, proteolytic subunit homolog (E.
           coli) (CLPP) [Danio rerio]
          Length = 266

 Score =  255 bits (652), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 118/189 (62%), Positives = 156/189 (82%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P+VVEQT RGER+YDIYSRLL+ERI+ V G I+D +A+L+ AQLLFL++E+  K I +
Sbjct: 29  LIPIVVEQTGRGERAYDIYSRLLRERIICVMGPIDDSVASLVIAQLLFLQSESNNKPIHM 88

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G+AIYDTMQ+I  PIST+C+GQAASMGSLLL+AG  GMR +LPNARI++
Sbjct: 89  YINSPGGVVTSGLAIYDTMQYILNPISTWCVGQAASMGSLLLAAGTAGMRHSLPNARIMV 148

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQA+DI   A++I+K+KR++N IY K+ G+  E +E  ++RD  MS  EA D
Sbjct: 149 HQPSGGARGQATDIAIQAEEILKLKRQINNIYSKHTGQLLETIESVMERDRYMSPMEAQD 208

Query: 198 WGVVDKVLM 206
           +G++DKVL+
Sbjct: 209 FGIIDKVLV 217


>gi|317486004|ref|ZP_07944859.1| Clp protease [Bilophila wadsworthia 3_1_6]
 gi|316922777|gb|EFV44008.1| Clp protease [Bilophila wadsworthia 3_1_6]
          Length = 207

 Score =  255 bits (652), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 117/206 (56%), Positives = 165/206 (80%), Gaps = 1/206 (0%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           +D+    VP+VVE + R ER+YDI+SRLLK+RIV +  ++ D +A+LICAQLLFLE+++P
Sbjct: 2   QDILDMTVPIVVETSGRTERAYDIFSRLLKDRIVLLGSEVNDAVASLICAQLLFLESQDP 61

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +KEI LYINSPGG VTAGMAIYDTM +I PPI+T CMG+AASMG+ LLSAG+KGMR+ALP
Sbjct: 62  EKEIYLYINSPGGSVTAGMAIYDTMNYITPPIATVCMGRAASMGAFLLSAGQKGMRYALP 121

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+++++HQP GGF GQA+DI+ HA++I++++  LN +  K+ G+  E++ +  +RD+ M+
Sbjct: 122 NSQVMIHQPLGGFQGQATDIDIHAREILRMRETLNGLLAKHTGQPIEKIAQDTERDNFMT 181

Query: 192 ASEACDWGVVDKVLMSRID-IEEKSK 216
           A  A  +G+VDKVL SR D + EKS+
Sbjct: 182 AEMAQAYGLVDKVLASRRDLLAEKSE 207


>gi|226529931|ref|NP_001141255.1| hypothetical protein LOC100273342 [Zea mays]
 gi|194703568|gb|ACF85868.1| unknown [Zea mays]
          Length = 304

 Score =  255 bits (652), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 117/192 (60%), Positives = 156/192 (81%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+E T+RGER+YDI+SRLLKERIV + G I D  A+L+ AQLLFLE+ENP K + 
Sbjct: 76  GLVPMVIETTSRGERAYDIFSRLLKERIVCINGPIADDTASLVVAQLLFLESENPLKPVH 135

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGVVTAG+AIYDTMQ+I+ P++T C+GQAASMGSLLL+AG  G R ALPNAR++
Sbjct: 136 LYINSPGGVVTAGLAIYDTMQYIRCPVTTLCIGQAASMGSLLLAAGAPGERRALPNARVM 195

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  GQA+DI   A++I+K++ RLN+IY K+  +  +++E+ ++RD  M   EA 
Sbjct: 196 IHQPSGGAQGQATDIAIQAKEILKLRDRLNKIYQKHTRQPIDKIEQCMERDLFMDPDEAR 255

Query: 197 DWGVVDKVLMSR 208
           DWG++D+V+ +R
Sbjct: 256 DWGLIDEVIENR 267


>gi|172058408|ref|YP_001814868.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Exiguobacterium sibiricum 255-15]
 gi|171990929|gb|ACB61851.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Exiguobacterium sibiricum 255-15]
          Length = 192

 Score =  255 bits (652), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 115/188 (61%), Positives = 149/188 (79%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P V+EQTNRGER+YDIYSRLLK+RI+ +   I+D++A  + AQLLFL AE+P KEISL
Sbjct: 2   LIPTVIEQTNRGERAYDIYSRLLKDRIILLGSAIDDNVANSVVAQLLFLAAEDPDKEISL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TAGMAIYDTM FIKP +ST C+G AASMG+ LL AG KG RFALPNA I++
Sbjct: 62  YINSPGGSITAGMAIYDTMNFIKPQVSTICIGMAASMGAFLLQAGAKGKRFALPNAEIMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI+ HA+ I+K++  LN+I  +N G+  E +E+  +RD+ MSA  A D
Sbjct: 122 HQPLGGTQGQASDIKIHAERIIKMREHLNKIMAENTGQPLEVIERDTERDNFMSAQAAAD 181

Query: 198 WGVVDKVL 205
           +G++D+V+
Sbjct: 182 YGLIDRVM 189


>gi|298529124|ref|ZP_07016527.1| Endopeptidase Clp [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510560|gb|EFI34463.1| Endopeptidase Clp [Desulfonatronospira thiodismutans ASO3-1]
          Length = 202

 Score =  255 bits (651), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 112/198 (56%), Positives = 157/198 (79%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +PMV+E T RGER+YD+YSRLLK+RI+ +   I+DH+A LICAQLLFLE+E+ ++EI+ Y
Sbjct: 5   IPMVIESTGRGERAYDLYSRLLKDRIILLGTPIDDHVANLICAQLLFLESESQEREINFY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDTMQ+I  P++T C+GQAASMG+LLL+AG+ GMR+ALP++RIL+H
Sbjct: 65  INSPGGSVTAGLAIYDTMQYISAPVATLCLGQAASMGALLLAAGQSGMRYALPHSRILIH 124

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GGF GQA+DI+  A++I+++K +LN I   +      ++E   DRD+ + A EA D+
Sbjct: 125 QPMGGFKGQATDIDIQAKEIIRLKSKLNNILAHHTKVDLAKIEHDTDRDYYLEAQEAQDY 184

Query: 199 GVVDKVLMSRIDIEEKSK 216
           G++D VL SR +I++  K
Sbjct: 185 GLIDSVLTSRSEIDKTGK 202


>gi|313683647|ref|YP_004061385.1| ATP-dependent clp protease proteolytic subunit clpp [Sulfuricurvum
           kujiense DSM 16994]
 gi|313156507|gb|ADR35185.1| ATP-dependent Clp protease proteolytic subunit ClpP [Sulfuricurvum
           kujiense DSM 16994]
          Length = 198

 Score =  255 bits (651), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 115/199 (57%), Positives = 162/199 (81%), Gaps = 1/199 (0%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P V+E+T RGERSYDIYSRLLK+RI+ ++G++ D +A+ I AQLLFLEAE+P K+I
Sbjct: 1   MSYIPYVIEKTGRGERSYDIYSRLLKDRIIMLSGEVNDPVASSIVAQLLFLEAEDPAKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGGV+T+GMAI+DTM +I+P + T C+GQAASMG+ LLS+G KG R+ALP+ARI
Sbjct: 61  YFYINSPGGVITSGMAIFDTMNYIRPDVCTICIGQAASMGAFLLSSGTKGKRYALPHARI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DIE  A++I+++K  LNEI  KNCG++ +++EK  DRD+ MSA+EA
Sbjct: 121 MIHQPLGGAQGQATDIEIQAKEILRMKAELNEILAKNCGQSVKKLEKDTDRDNFMSAAEA 180

Query: 196 CDWGVVDKVLMSRIDIEEK 214
             +G++D+VL+ + + EEK
Sbjct: 181 VTYGIIDEVLVQK-EKEEK 198


>gi|306820816|ref|ZP_07454440.1| ATP-dependent Clp protease proteolytic subunit [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
 gi|304551134|gb|EFM39101.1| ATP-dependent Clp protease proteolytic subunit [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
          Length = 195

 Score =  255 bits (651), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 113/193 (58%), Positives = 153/193 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P V+EQT+RGERSYDIYSRLLKERI+F+  ++ D  A+LI AQLLFLE+E+P K+I
Sbjct: 1   MAFIPYVIEQTSRGERSYDIYSRLLKERIIFLGDEVNDQTASLIVAQLLFLESEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG +TAGMAIYDTMQ IKP +ST C+G AASMG+ LLS+G+KG R+ALPN+ I
Sbjct: 61  HFYINSPGGSITAGMAIYDTMQHIKPDVSTICVGMAASMGAFLLSSGKKGKRYALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+ HA+ I++++++LNEI  +  GK+ E + K  +RD  MSA EA
Sbjct: 121 MIHQPLGGTKGQATDIQIHAERIIRLRKKLNEIMAEQTGKSIEIINKDTERDFFMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
            D+G++D V++ R
Sbjct: 181 KDYGLIDSVMLGR 193


>gi|150388889|ref|YP_001318938.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Alkaliphilus
           metalliredigens QYMF]
 gi|167008644|sp|A6TM61|CLPP_ALKMQ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|149948751|gb|ABR47279.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Alkaliphilus
           metalliredigens QYMF]
          Length = 194

 Score =  255 bits (651), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 118/193 (61%), Positives = 152/193 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQT+RGERSYDI+SRLLKERI+F+  +I D  A+L+ AQLLFLEAE+P K+I
Sbjct: 1   MALVPVVVEQTSRGERSYDIFSRLLKERIIFLGDEINDVTASLLVAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG +TAGMAIYDTM +IKP +ST C+G AASMG+ LL+AG KG RFALPNA +
Sbjct: 61  QIYINSPGGSITAGMAIYDTMNYIKPDVSTICVGMAASMGAFLLAAGAKGKRFALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA DI  HA+ IVK++  LN+I V+  G+  E V+K  DRD  M A EA
Sbjct: 121 MIHQPLGGTRGQAEDIRIHAERIVKLRDTLNKILVERTGQPLERVQKDTDRDFFMEAKEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++D+V+ SR
Sbjct: 181 KEYGIIDEVISSR 193


>gi|154148860|ref|YP_001405639.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           hominis ATCC BAA-381]
 gi|166201810|sp|A7HZE8|CLPP_CAMHC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|153804869|gb|ABS51876.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           hominis ATCC BAA-381]
          Length = 195

 Score =  255 bits (651), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 117/188 (62%), Positives = 151/188 (80%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            VP V+E+T+RGERSYDIYSRLLK+RIV ++G+I D +A+ + AQLLFLEAE+P K+I L
Sbjct: 2   FVPYVIERTSRGERSYDIYSRLLKDRIVMLSGEINDEVASSVVAQLLFLEAEDPDKDIYL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G +IYDTM +IKP +ST C+GQAASMG+ LLS GEKG R+ALPNARI++
Sbjct: 62  YINSPGGVVTSGFSIYDTMNYIKPAVSTICIGQAASMGAFLLSCGEKGKRYALPNARIMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE   ++I++IK  LN+I  +N G+   ++EK  DRD  MSA EA  
Sbjct: 122 HQPLGGAQGQATDIEITTKEILRIKATLNKILAENSGQKLSKIEKDTDRDFYMSAQEAVK 181

Query: 198 WGVVDKVL 205
           +G++DKVL
Sbjct: 182 YGLIDKVL 189


>gi|312880128|ref|ZP_07739928.1| ATP-dependent Clp protease proteolytic subunit ClpP [Aminomonas
           paucivorans DSM 12260]
 gi|310783419|gb|EFQ23817.1| ATP-dependent Clp protease proteolytic subunit ClpP [Aminomonas
           paucivorans DSM 12260]
          Length = 201

 Score =  255 bits (651), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 119/192 (61%), Positives = 153/192 (79%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVP VVEQT RGER+YDIYSRLLK+RIVF+  +IE+HMA L+ AQLLFLE+E+P+K++ 
Sbjct: 10  ALVPYVVEQTGRGERTYDIYSRLLKDRIVFLGEEIEEHMANLVVAQLLFLESEDPEKDVY 69

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGVVTAGMAIYDTMQ+IK P+ST C GQAASM ++LL+ G KG R ALP+ARI+
Sbjct: 70  LYINSPGGVVTAGMAIYDTMQYIKCPVSTICTGQAASMAAVLLAGGAKGKRIALPHARIM 129

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA+DIE  A++I++++  LN+I V + G+  E ++   DRD  MSA EA 
Sbjct: 130 IHQPLGGAQGQATDIEIQAKEILRLREVLNQILVDHTGQPVERIKADTDRDFFMSAPEAV 189

Query: 197 DWGVVDKVLMSR 208
            +G+VDKV+  R
Sbjct: 190 AYGLVDKVIDKR 201


>gi|332016545|gb|EGI57426.1| Putative ATP-dependent Clp protease proteolytic subunit,
           mitochondrial [Acromyrmex echinatior]
          Length = 224

 Score =  255 bits (651), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 113/191 (59%), Positives = 158/191 (82%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
           +L  VP+VVEQ+ RGER+YDIYSRLLKERI+ + G + D +A+ + AQLLFL++E+ +  
Sbjct: 11  YLNFVPIVVEQSGRGERAYDIYSRLLKERIICLMGPVTDVVASAVIAQLLFLQSESSKNP 70

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I LYINSPGG VTAG+ IYDTMQ++ PPIST+C+GQA SM SLLL+AG KGMR +LPNAR
Sbjct: 71  IHLYINSPGGSVTAGLGIYDTMQYVLPPISTWCVGQACSMASLLLAAGTKGMRHSLPNAR 130

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQPSGG  GQA+DI+  A +I+K+K+++NE+YVK+ G+  EE+ K+++RD+ MS ++
Sbjct: 131 IMIHQPSGGVQGQATDIQIQATEILKLKQQINELYVKHTGQNLEEIAKSMERDNFMSPTQ 190

Query: 195 ACDWGVVDKVL 205
           A ++G++DKVL
Sbjct: 191 AKEFGIIDKVL 201


>gi|294101895|ref|YP_003553753.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Aminobacterium colombiense DSM 12261]
 gi|293616875|gb|ADE57029.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Aminobacterium colombiense DSM 12261]
          Length = 193

 Score =  255 bits (651), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 111/192 (57%), Positives = 158/192 (82%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+PMV+EQ+ RGER+YDIYSRLLK+RI+F+  +I+D +A  + AQLLFLE+E+P K+I L
Sbjct: 2   LIPMVIEQSGRGERAYDIYSRLLKDRIIFLGQEIDDPIANTVVAQLLFLESEDPDKDIHL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+++G+AIYDTMQ+IK P+ST C+GQAASM ++LL+ G  G R ALPNAR+++
Sbjct: 62  YINSPGGVISSGLAIYDTMQYIKSPVSTICIGQAASMAAVLLAGGAPGKRIALPNARVMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE HA++I+KI+ ++N+I VK+ G+T + ++   DRD  MSA+EA +
Sbjct: 122 HQPLGGAHGQATDIEIHAKEILKIREKINDILVKHTGQTRKRIKADTDRDFYMSAAEALE 181

Query: 198 WGVVDKVLMSRI 209
           + ++DKV+ SR+
Sbjct: 182 YSIIDKVIESRV 193


>gi|302874445|ref|YP_003843078.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           cellulovorans 743B]
 gi|307690948|ref|ZP_07633394.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           cellulovorans 743B]
 gi|302577302|gb|ADL51314.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           cellulovorans 743B]
          Length = 194

 Score =  254 bits (650), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 115/190 (60%), Positives = 154/190 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQTNRGERSYDIYSRLLK+RIVF+  ++ D  A+++ AQLLFLE+E+P K+I
Sbjct: 1   MALVPMVVEQTNRGERSYDIYSRLLKDRIVFLGEEVNDASASVVVAQLLFLESEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG +TAGMAIYDTM +IKP ++T C+G AASMG+ LL+AG KG RFALPN+ I
Sbjct: 61  SLYINSPGGSITAGMAIYDTMNYIKPDVATICIGMAASMGAFLLAAGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DI  HA+ I+ +K++LN I  +  G+  E +EK  +RD+ M+A +A
Sbjct: 121 MIHQPLGGFKGQATDIGIHAERILLMKKKLNSILSERTGQPLEVIEKDTERDNFMTADKA 180

Query: 196 CDWGVVDKVL 205
            D+G++D+V+
Sbjct: 181 KDYGLIDEVI 190


>gi|160878535|ref|YP_001557503.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           phytofermentans ISDg]
 gi|160427201|gb|ABX40764.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           phytofermentans ISDg]
          Length = 193

 Score =  254 bits (650), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 120/193 (62%), Positives = 154/193 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLLKERI+F+  ++ D  A++I AQLLFLEAE+P K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLKERIIFLGEEVTDVSASVIVAQLLFLEAEDPGKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG VTAGMAIYDTM +IK  +ST C+G AASMG+ LL+ G KG RFALPNA +
Sbjct: 61  SLYINSPGGSVTAGMAIYDTMNYIKCDVSTICIGMAASMGAFLLAGGAKGKRFALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+DI+  A++I+KIK++LN I  +N GK  E VE   +RD+ MSA EA
Sbjct: 121 MIHQPSGGAKGQATDIQIVAENILKIKKKLNTILSENTGKPLEVVEVDTERDYYMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++D V+ SR
Sbjct: 181 KNYGIIDSVIASR 193


>gi|291278625|ref|YP_003495460.1| ATP-dependent Clp protease proteolytic subunit [Deferribacter
           desulfuricans SSM1]
 gi|290753327|dbj|BAI79704.1| ATP-dependent Clp protease, proteolytic subunit [Deferribacter
           desulfuricans SSM1]
          Length = 195

 Score =  254 bits (650), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 117/190 (61%), Positives = 152/190 (80%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP VVEQT RGER YDIYSRLLK+RI+F+   I+D++A ++ AQ+LFLEAE+P K+I LY
Sbjct: 5   VPYVVEQTGRGERVYDIYSRLLKDRIIFLGTAIDDNVANVVIAQMLFLEAEDPDKDIYLY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGV+T+G+AIYDTM +IKP +ST C+GQAASM ++LLS+G KG RFALPNARI++H
Sbjct: 65  INSPGGVITSGLAIYDTMNYIKPDVSTICIGQAASMAAVLLSSGAKGKRFALPNARIMIH 124

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GGF GQA DIE HA +I+++K+ LNEI  KN G+  E++E   DRD  MSA EA ++
Sbjct: 125 QPLGGFQGQAKDIEIHANEILRMKKMLNEILSKNTGQPIEKIEMDSDRDFFMSAMEAKEY 184

Query: 199 GVVDKVLMSR 208
           G++D  +  R
Sbjct: 185 GLIDDCIEKR 194


>gi|116747551|ref|YP_844238.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Syntrophobacter fumaroxidans MPOB]
 gi|166214718|sp|A0LEF1|CLPP_SYNFM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|116696615|gb|ABK15803.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Syntrophobacter fumaroxidans MPOB]
          Length = 202

 Score =  254 bits (650), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 112/196 (57%), Positives = 158/196 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P+VVEQ++RGER++DIYSRLL++RI+F+   I D +A +I AQLLFLE+E+P K+I
Sbjct: 1   MSLIPIVVEQSSRGERAFDIYSRLLRDRIIFLGTAITDEVANVIIAQLLFLESEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG+VTAG+AIYDTMQFIKP +ST CMGQAASM ++LL+AG KG R+ALP+ RI
Sbjct: 61  HFYINSPGGLVTAGLAIYDTMQFIKPNVSTLCMGQAASMAAILLAAGVKGKRYALPHVRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +LHQP GGF GQA+D+E  A++I+K++  LN+I V++ G+  E++++  DRD  MS  +A
Sbjct: 121 MLHQPMGGFQGQATDVEIQAKEILKLREELNDILVRHTGRPVEQIQRDTDRDFYMSGEQA 180

Query: 196 CDWGVVDKVLMSRIDI 211
            ++G+VD +  SR+ I
Sbjct: 181 REYGMVDHIFTSRLSI 196


>gi|77919287|ref|YP_357102.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pelobacter
           carbinolicus DSM 2380]
 gi|90183182|sp|Q3A3X5|CLPP_PELCD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|77545370|gb|ABA88932.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pelobacter
           carbinolicus DSM 2380]
          Length = 194

 Score =  254 bits (650), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 112/194 (57%), Positives = 157/194 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+PMVVEQT RGER+YDI+SRLLK+RI+F+ G ++D +A LI AQ+LFLE+E+P+KEI
Sbjct: 1   MSLIPMVVEQTGRGERAYDIFSRLLKDRIIFLGGAVDDQVANLIIAQMLFLESEDPEKEI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVTAGMAIYDTMQ+++ P+ST C+GQAASMG++LL+AG +G RFALP+ARI
Sbjct: 61  FLYINSPGGVVTAGMAIYDTMQYVRCPVSTLCVGQAASMGAVLLAAGGEGKRFALPHARI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DI  HAQ+I++++  LN +   + G+T E++    +RD  M + EA
Sbjct: 121 MIHQPWGGFQGQATDINIHAQEILRLRETLNGVLASHTGQTLEKIATDTERDFFMGSEEA 180

Query: 196 CDWGVVDKVLMSRI 209
             +G+VD ++  ++
Sbjct: 181 KKYGIVDDIVKRKV 194


>gi|323140768|ref|ZP_08075687.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Phascolarctobacterium sp. YIT 12067]
 gi|322414786|gb|EFY05586.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Phascolarctobacterium sp. YIT 12067]
          Length = 197

 Score =  254 bits (649), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 112/190 (58%), Positives = 157/190 (82%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP+VVEQ++RGERSYDIYSRLLK+RIVFVTG I+D+MA ++ AQLLFLE+E+P K+I
Sbjct: 1   MNYVPIVVEQSSRGERSYDIYSRLLKDRIVFVTGPIDDNMANVVIAQLLFLESEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG V+AGMAIYDTMQ+IKP +ST CMG AASM S+LL+AG  G RFALP +R+
Sbjct: 61  HLYINSPGGSVSAGMAIYDTMQYIKPDVSTICMGMAASMASVLLAAGAPGKRFALPYSRV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE HA++I++I+  +N++  K+ G+T E++    +RDH +++ EA
Sbjct: 121 MIHQPLGGAQGQATEIEIHAREILRIREEMNQVLAKHTGQTVEKIAADTERDHYLTSKEA 180

Query: 196 CDWGVVDKVL 205
            ++G++D+V+
Sbjct: 181 KEYGLIDEVV 190


>gi|329121861|ref|ZP_08250476.1| ATP-dependent Clp protease, protease subunit [Dialister
           micraerophilus DSM 19965]
 gi|327467799|gb|EGF13291.1| ATP-dependent Clp protease, protease subunit [Dialister
           micraerophilus DSM 19965]
          Length = 205

 Score =  254 bits (649), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 113/194 (58%), Positives = 156/194 (80%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E + +  VP+VVEQT+ GERSYDIYSRLLK+RI+F+ GQIEDHMA +I AQLLFLEAE+P
Sbjct: 3   EGIIMAYVPIVVEQTSHGERSYDIYSRLLKDRIIFLDGQIEDHMANVIIAQLLFLEAEDP 62

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+I LYINSPGGVVTAGMAIYDTMQ+I+P +ST C+G  ASM ++LL++G KG RFALP
Sbjct: 63  DKDIHLYINSPGGVVTAGMAIYDTMQYIRPDVSTICIGSCASMAAVLLTSGAKGKRFALP 122

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           ++ +++HQP GG  GQA++IE HA++I++++  LN I  K+ G+  + ++K  +RD+ M+
Sbjct: 123 HSNVMIHQPLGGVQGQATEIEIHAREILRLRDELNGILAKHTGQPLDVIKKDTERDNFMT 182

Query: 192 ASEACDWGVVDKVL 205
           A  A  +G++DK+L
Sbjct: 183 AENALKYGLIDKIL 196


>gi|254441469|ref|ZP_05054962.1| Clp protease [Octadecabacter antarcticus 307]
 gi|198251547|gb|EDY75862.1| Clp protease [Octadecabacter antarcticus 307]
          Length = 209

 Score =  254 bits (649), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 119/208 (57%), Positives = 159/208 (76%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  D ++ LVPMVVEQT RGER+YDI+SRLLKERI+FV G I D M+ L+ AQLL LEA
Sbjct: 2   QDPIDTYMNLVPMVVEQTARGERAYDIFSRLLKERIIFVNGPIHDGMSQLVVAQLLHLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEIS+YINSPGG V +GM+IYDTMQ+I+P +ST   G AASMGS++   GEKGMRF
Sbjct: 62  ENPKKEISMYINSPGGAVHSGMSIYDTMQYIRPKVSTLICGMAASMGSVIAVGGEKGMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPN+ I++HQPSGG  G+ASD+   A+ I + + R  ++Y+K+ G+T++ VEK LDRD 
Sbjct: 122 SLPNSEIMVHQPSGGSQGKASDMLITARHIEQTRERFYKLYMKHTGQTHKSVEKALDRDT 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIEEKSK 216
            M+  EA +WG +D+++ SR   E + K
Sbjct: 182 WMTPEEAKEWGHLDEIVESRGKAEGEDK 209


>gi|83589392|ref|YP_429401.1| ATP-dependent Clp protease proteolytic subunit [Moorella
           thermoacetica ATCC 39073]
 gi|115311785|sp|Q2RL31|CLPP_MOOTA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|83572306|gb|ABC18858.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moorella
           thermoacetica ATCC 39073]
          Length = 199

 Score =  254 bits (649), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 115/191 (60%), Positives = 152/191 (79%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQT+RGER+YDIYSRLLK+RI+F+   I+DH+A L+ AQ+LFLEAE+P K+I L
Sbjct: 4   LVPMVVEQTSRGERAYDIYSRLLKDRIIFLGSAIDDHVANLVIAQMLFLEAEDPDKDIHL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG ++AGMAI+DTMQ+I+P +ST C+G AASMG+ LL+AG KG RFALPN+ I++
Sbjct: 64  YINSPGGSISAGMAIFDTMQYIRPDVSTICVGLAASMGAFLLAAGAKGKRFALPNSEIMI 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA DIE HA+ I+ I+  LN I  +  GK  E++ +  DRDH M+A EA +
Sbjct: 124 HQPMGGTQGQAVDIEIHAKRILAIRDNLNRILSEITGKPLEQIARDTDRDHFMTAREARE 183

Query: 198 WGVVDKVLMSR 208
           +G++D+V+  R
Sbjct: 184 YGLIDEVITKR 194


>gi|195118808|ref|XP_002003928.1| GI20379 [Drosophila mojavensis]
 gi|193914503|gb|EDW13370.1| GI20379 [Drosophila mojavensis]
          Length = 223

 Score =  254 bits (648), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 116/185 (62%), Positives = 151/185 (81%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MVVEQT RGER+YDI+SRLLKERI+ + G I D +++ + AQLLFL++EN  K I LYIN
Sbjct: 1   MVVEQTGRGERAYDIFSRLLKERIICLMGNITDDISSTVVAQLLFLQSENVNKPIHLYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGGVVTAG+AIYDTMQ++KPPI+T+C+GQA SMGSLLL+AG  GMR++LPNARI++HQP
Sbjct: 61  SPGGVVTAGLAIYDTMQYVKPPIATWCVGQACSMGSLLLAAGAPGMRYSLPNARIMIHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
           SGG  GQA+DI  HA++I+KIKR+L  IYVK+   +Y+E+   ++RDH M+  EA   G+
Sbjct: 121 SGGAQGQATDILIHAEEIIKIKRQLTNIYVKHAKNSYDEMCSRMERDHFMTPEEAKTLGI 180

Query: 201 VDKVL 205
           +D VL
Sbjct: 181 IDHVL 185


>gi|167464584|ref|ZP_02329673.1| ATP-dependent Clp protease proteolytic subunit [Paenibacillus
           larvae subsp. larvae BRL-230010]
          Length = 196

 Score =  254 bits (648), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 115/197 (58%), Positives = 159/197 (80%), Gaps = 1/197 (0%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+PMVVEQ  RGERSYDIYSRLLK+RI+F+   I+D +  L+ AQLLFL A++  K+I
Sbjct: 1   MSLIPMVVEQEARGERSYDIYSRLLKDRIIFIGSAIDDDVVNLVIAQLLFLSAQDADKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG+ IYDTMQ+IKP +ST C+G AASMGSLLL+AG KG RFALPN+ +
Sbjct: 61  HLYINSPGGSVTAGLGIYDTMQYIKPDVSTICVGMAASMGSLLLTAGAKGKRFALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+ HA  I+K +++LNEIYV + G+TY++++K  DRD+ +SA +A
Sbjct: 121 MIHQPLGGVRGQAADIKIHADWILKTRKKLNEIYVHHTGQTYDKIDKDTDRDNFLSALDA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G++D+V+ +R D++
Sbjct: 181 KEYGLIDEVI-TRSDLK 196


>gi|159477909|ref|XP_001697051.1| catalytic subunit of mitochondrial ClpXP protease [Chlamydomonas
           reinhardtii]
 gi|158274963|gb|EDP00743.1| catalytic subunit of mitochondrial ClpXP protease [Chlamydomonas
           reinhardtii]
          Length = 231

 Score =  254 bits (648), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 117/190 (61%), Positives = 150/190 (78%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP+V+EQT RGER+YDI+SRLLKERIV + G I+D+ +  + AQLLFLE++ P K I++Y
Sbjct: 34  VPIVIEQTTRGERAYDIFSRLLKERIVVINGGIDDNTSNSVVAQLLFLESQAPDKPITMY 93

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGVVTAG+AIYDTMQ+I+ PIST  +GQAASM SLLL+AG KG R +LPN+RI+LH
Sbjct: 94  INSPGGVVTAGLAIYDTMQYIRCPISTLVVGQAASMASLLLAAGAKGQRRSLPNSRIMLH 153

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP G   GQA+DI   AQ+I+++K  L  +Y+K+ G T E  EKTLDRD  MSA EA DW
Sbjct: 154 QPLGAAEGQATDIMIRAQEIMRMKETLTSLYIKHTGCTREMAEKTLDRDSFMSAQEAKDW 213

Query: 199 GVVDKVLMSR 208
           G++D++L  R
Sbjct: 214 GLIDEILTER 223


>gi|195645066|gb|ACG42001.1| ATP-dependent Clp protease proteolytic subunit [Zea mays]
          Length = 302

 Score =  254 bits (648), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 117/192 (60%), Positives = 156/192 (81%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+E T+RGER+YDI+SRLLKERIV + G I D  A+L+ AQLLFLE+ENP K + 
Sbjct: 76  GLVPMVIETTSRGERAYDIFSRLLKERIVCIHGPIADDTASLVVAQLLFLESENPLKPVH 135

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGVVTAG+AIYDTMQ+I+ P++T C+GQAASMGSLLL+AG  G R ALPNAR++
Sbjct: 136 LYINSPGGVVTAGLAIYDTMQYIRCPVTTLCIGQAASMGSLLLAAGAPGERRALPNARVM 195

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  GQA+DI   A++I+K++ RLN+IY K+  +  +++E+ ++RD  M   EA 
Sbjct: 196 IHQPSGGAQGQATDIAIQAKEILKMRDRLNKIYQKHTRQPIDKIEQCMERDLFMDPEEAR 255

Query: 197 DWGVVDKVLMSR 208
           DWG++D+V+ +R
Sbjct: 256 DWGLIDEVIENR 267


>gi|217072528|gb|ACJ84624.1| unknown [Medicago truncatula]
          Length = 238

 Score =  254 bits (648), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 115/191 (60%), Positives = 154/191 (80%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+PMV+E ++RGER+YDI+SRLLKERIV + G I D  A ++ AQLLFLE+ENP K I++
Sbjct: 29  LIPMVIETSSRGERAYDIFSRLLKERIVCINGPISDDTAHVVVAQLLFLESENPSKPINM 88

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG VTAG+AIYDTMQ+I+ PI+T C+GQAASMGSLLL AG KG R ALPNA I++
Sbjct: 89  YLNSPGGAVTAGLAIYDTMQYIRSPINTICLGQAASMGSLLLCAGAKGQRRALPNATIMI 148

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG+SGQA DI  H + IV++   LNE+YVK+ G+  + ++K +DRD+ M+A EA +
Sbjct: 149 HQPSGGYSGQAKDIAIHTKQIVRMWDALNELYVKHTGQPLDVIQKNMDRDYFMTAEEAKE 208

Query: 198 WGVVDKVLMSR 208
           +G++D+V+  R
Sbjct: 209 FGIIDEVIDQR 219


>gi|226491764|ref|NP_001150643.1| ATP-dependent Clp protease proteolytic subunit [Zea mays]
 gi|195640820|gb|ACG39878.1| ATP-dependent Clp protease proteolytic subunit [Zea mays]
          Length = 302

 Score =  254 bits (648), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 117/192 (60%), Positives = 156/192 (81%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+E T+RGER+YDI+SRLLKERIV + G I D  A+L+ AQLLFLE+ENP K + 
Sbjct: 76  GLVPMVIETTSRGERAYDIFSRLLKERIVCIHGPIADDTASLVVAQLLFLESENPLKPVH 135

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGVVTAG+AIYDTMQ+I+ P++T C+GQAASMGSLLL+AG  G R ALPNAR++
Sbjct: 136 LYINSPGGVVTAGLAIYDTMQYIRCPVTTLCIGQAASMGSLLLAAGAPGERRALPNARVM 195

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  GQA+DI   A++I+K++ RLN+IY K+  +  +++E+ ++RD  M   EA 
Sbjct: 196 IHQPSGGAQGQATDIAIQAKEILKMRDRLNKIYQKHTRQPIDKIEQCMERDLFMDPEEAR 255

Query: 197 DWGVVDKVLMSR 208
           DWG++D+V+ +R
Sbjct: 256 DWGLIDEVIENR 267


>gi|208779709|ref|ZP_03247053.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Francisella
           novicida FTG]
 gi|208744164|gb|EDZ90464.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Francisella
           novicida FTG]
          Length = 201

 Score =  254 bits (648), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 115/191 (60%), Positives = 152/191 (79%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+E+T  GER++DIYSRLLKERIVF+ G++ DH A L+ AQLLFLE+E+P K+I  
Sbjct: 6   LVPTVIEKTAGGERAFDIYSRLLKERIVFLNGEVNDHSANLVIAQLLFLESEDPNKDIYF 65

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG+VTAGM +YDTMQFIKP +ST C+G AASMGSLLL+ G KG R++LP+++I++
Sbjct: 66  YINSPGGMVTAGMGVYDTMQFIKPDVSTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMI 125

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQASDIE HA++I++IK RLN++   + G+  E + K  DRD+ M A EA  
Sbjct: 126 HQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFMMADEAKA 185

Query: 198 WGVVDKVLMSR 208
           +G++D V+ SR
Sbjct: 186 YGLIDHVIESR 196


>gi|288818082|ref|YP_003432430.1| ATP-dependent Clp protease proteolytic subunit [Hydrogenobacter
           thermophilus TK-6]
 gi|288787482|dbj|BAI69229.1| ATP-dependent Clp protease proteolytic subunit [Hydrogenobacter
           thermophilus TK-6]
 gi|308751684|gb|ADO45167.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Hydrogenobacter thermophilus TK-6]
          Length = 199

 Score =  254 bits (648), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 115/191 (60%), Positives = 157/191 (82%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+V+EQT RGER+YDIYSRLL++RIV +   I+DH+A LI AQLLFLEA++P+K+I +
Sbjct: 8   LVPIVIEQTPRGERAYDIYSRLLQDRIVLLGYPIDDHVANLIVAQLLFLEAQDPEKDIYM 67

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGMAIYDTMQ+IKP + T C+GQAASMG++LL+AG  G R+ALP++RI++
Sbjct: 68  YINSPGGSVTAGMAIYDTMQYIKPDVVTICIGQAASMGAVLLAAGAPGKRYALPHSRIMI 127

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG +GQA+DI  HA++I +IK  LNEI  K+ G+  E +E+ ++RD+ MS+ EA +
Sbjct: 128 HQPLGGITGQATDIIIHAEEIKRIKHMLNEILSKHTGQPLERIERDVERDYFMSSEEARE 187

Query: 198 WGVVDKVLMSR 208
           +G+VD+V+  R
Sbjct: 188 YGIVDRVIAKR 198


>gi|242062408|ref|XP_002452493.1| hypothetical protein SORBIDRAFT_04g026880 [Sorghum bicolor]
 gi|241932324|gb|EES05469.1| hypothetical protein SORBIDRAFT_04g026880 [Sorghum bicolor]
          Length = 309

 Score =  254 bits (648), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 117/192 (60%), Positives = 156/192 (81%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+E T+RGER+YDI+SRLLKERIV + G I D  A+L+ AQLLFLE+ENP K + 
Sbjct: 83  GLVPMVIETTSRGERAYDIFSRLLKERIVCIHGPIADDTASLVVAQLLFLESENPLKPVH 142

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGVVTAG+AIYDTMQ+I+ P++T C+GQAASMGSLLL+AG  G R ALPNAR++
Sbjct: 143 LYINSPGGVVTAGLAIYDTMQYIRCPVTTLCIGQAASMGSLLLAAGAPGERRALPNARVM 202

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  GQA+DI   A++I+K++ RLN+IY K+  +  +++E+ ++RD  M   EA 
Sbjct: 203 IHQPSGGAQGQATDIAIQAKEILKMRDRLNKIYQKHTRQPIDKIEQCMERDLFMDPEEAR 262

Query: 197 DWGVVDKVLMSR 208
           DWG++D+V+ +R
Sbjct: 263 DWGLIDEVIENR 274


>gi|78778230|ref|YP_394545.1| ATP-dependent Clp protease proteolytic subunit [Sulfurimonas
           denitrificans DSM 1251]
 gi|124015202|sp|Q30NX1|CLPP_SULDN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|78498770|gb|ABB45310.1| ATP-dependent Clp protease proteolytic subunit ClpP [Sulfurimonas
           denitrificans DSM 1251]
          Length = 196

 Score =  254 bits (648), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 112/193 (58%), Positives = 157/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P VVE+T RGERSYDIYSRLLK+RI+ ++G++ D +A+ I AQ+LFLEAE+P+K+I
Sbjct: 1   MSYIPYVVEKTARGERSYDIYSRLLKDRIIMLSGEVNDAVASSIVAQMLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGGVVTAGMAIYDTM +I+P ++T C+GQAASMG+ LLS+G KG R+ALP+ARI
Sbjct: 61  YFYINSPGGVVTAGMAIYDTMNYIRPDVATICVGQAASMGAFLLSSGAKGKRYALPHARI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI   A++I+++K  LN I  KNC ++ ++VEK  DRD+ MSA E+
Sbjct: 121 MIHQPLGGAQGQATDIAIQAKEILRMKEELNAILAKNCSQSIKKVEKDTDRDNFMSAEES 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++D+VL+ +
Sbjct: 181 KEYGMIDEVLLKK 193


>gi|66472380|ref|NP_001018520.1| putative ATP-dependent Clp protease proteolytic subunit,
           mitochondrial [Danio rerio]
 gi|63102525|gb|AAH95769.1| ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit
           homolog (E. coli) [Danio rerio]
          Length = 266

 Score =  254 bits (648), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 118/189 (62%), Positives = 155/189 (82%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P+VVEQT RGER+YDIYSRLL+ERI+ V G I+D +A+L+ AQLLFL++E+  K I +
Sbjct: 29  LIPIVVEQTGRGERAYDIYSRLLRERIICVMGPIDDSVASLVIAQLLFLQSESNNKPIHM 88

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G AIYDTMQ+I  PIST+C+GQAASMGSLLL+AG  GMR +LPNARI++
Sbjct: 89  YINSPGGVVTSGPAIYDTMQYILNPISTWCVGQAASMGSLLLAAGTAGMRHSLPNARIMV 148

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQA+DI   A++I+K+KR++N IY K+ G+  E +E  ++RD  MS  EA D
Sbjct: 149 HQPSGGARGQATDIAIQAEEILKLKRQINNIYSKHTGQLLETIESVMERDRYMSPMEAQD 208

Query: 198 WGVVDKVLM 206
           +G++DKVL+
Sbjct: 209 FGIIDKVLV 217


>gi|308271899|emb|CBX28507.1| ATP-dependent Clp protease proteolytic subunit [uncultured
           Desulfobacterium sp.]
          Length = 206

 Score =  253 bits (647), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 114/199 (57%), Positives = 159/199 (79%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+PMV+EQ++RGER+YDIYSRLLK+RI+F+   + D +A L+ AQLLFLE+E+P K+I+ 
Sbjct: 3   LIPMVIEQSSRGERAYDIYSRLLKDRIIFLGTAMNDEVANLLIAQLLFLESEDPDKDINF 62

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G+A+YDTMQ+IK  I+T C+GQAASMG+LLL+AG KG R+ALPNARIL+
Sbjct: 63  YINSPGGVVTSGLAVYDTMQYIKSDIATVCIGQAASMGALLLTAGAKGKRYALPNARILI 122

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQASDI   A++I+++K  LN+I   + GK  ++++   DRD+ MS  EA +
Sbjct: 123 HQPMGGFQGQASDIAIQAREILRMKDTLNDILTFHTGKDLKQIQVDTDRDYFMSGKEAEE 182

Query: 198 WGVVDKVLMSRIDIEEKSK 216
           +G++D V+ +R D++   K
Sbjct: 183 YGLIDHVITNRNDLDNIEK 201


>gi|295112117|emb|CBL28867.1| ATP-dependent Clp protease proteolytic subunit ClpP [Synergistetes
           bacterium SGP1]
          Length = 195

 Score =  253 bits (647), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 114/190 (60%), Positives = 151/190 (79%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+EQT RGERSYDIYSRLLK+RIVF+  Q+ D +A  I AQLLFLE+E+P K+I LY
Sbjct: 6   IPYVIEQTGRGERSYDIYSRLLKDRIVFLGTQVMDDVANSIVAQLLFLESEDPDKDIHLY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAGMAIYDTMQ+IK P+ST C+G AASM ++LLS G +G R ALPNA +++H
Sbjct: 66  INSPGGSVTAGMAIYDTMQYIKSPVSTICVGMAASMAAILLSGGARGKRLALPNAEVMIH 125

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG SGQASDIE HA++I+  ++R+N I  ++ G+  E+V +  DRD+ M+A EA D+
Sbjct: 126 QPLGGTSGQASDIEIHARNILNTRKRMNAILARHTGQDVEKVAQDTDRDNFMTAQEALDY 185

Query: 199 GVVDKVLMSR 208
           G++D+++ SR
Sbjct: 186 GLIDRIIESR 195


>gi|170693532|ref|ZP_02884691.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           graminis C4D1M]
 gi|170141687|gb|EDT09856.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           graminis C4D1M]
          Length = 219

 Score =  253 bits (647), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 117/200 (58%), Positives = 154/200 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LGLVP V+EQ+ RGER+YDIYSRLL+ERIVF+ G + +  A+LI AQLLFLE+ENP K+I
Sbjct: 11  LGLVPTVIEQSGRGERAYDIYSRLLRERIVFLVGPVNEQSASLIVAQLLFLESENPDKDI 70

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S YINSPGG V  G+AIYDTMQFIKP +ST C G AASMG+ LL AG++G R+ALPNARI
Sbjct: 71  SFYINSPGGSVYDGLAIYDTMQFIKPEVSTLCTGFAASMGTFLLCAGQRGKRYALPNARI 130

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  G A+DI+  A++++ ++ RLN +  +  G++ EEV +  DRD+ MSAS A
Sbjct: 131 MIHQPSGGSQGTAADIDIQAKEVLYLRERLNAMMAERTGRSIEEVARDTDRDNFMSASAA 190

Query: 196 CDWGVVDKVLMSRIDIEEKS 215
             +G+VD+VL +R  +   S
Sbjct: 191 KTYGLVDEVLETRAALNSSS 210


>gi|186475312|ref|YP_001856782.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           phymatum STM815]
 gi|184191771|gb|ACC69736.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           phymatum STM815]
          Length = 217

 Score =  253 bits (647), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 114/196 (58%), Positives = 151/196 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
             LVP V+EQ+ RGER+YDIYSRLL+ERIVF+ G + D  A+LI AQLLFLE+ENP K+I
Sbjct: 13  FNLVPTVIEQSGRGERAYDIYSRLLRERIVFLVGPVNDQSASLIVAQLLFLESENPDKDI 72

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S YINSPGG V  G+AI+DTMQFIKP +ST C G AASMG+ LL+AG  G R+ALPNARI
Sbjct: 73  SFYINSPGGSVYDGLAIFDTMQFIKPDVSTLCTGFAASMGTFLLAAGAPGKRYALPNARI 132

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  G ASD+E HA++++ ++ RLN++  +  G++  ++EK  DRD+ MSA  A
Sbjct: 133 MIHQPSGGGQGTASDVEIHAKEVLYLRERLNDVLAQRTGQSIAQIEKDTDRDNFMSAEAA 192

Query: 196 CDWGVVDKVLMSRIDI 211
             +G+VD VL +R+ +
Sbjct: 193 KTYGLVDDVLTTRVPL 208


>gi|313891581|ref|ZP_07825191.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Dialister microaerophilus UPII 345-E]
 gi|313120040|gb|EFR43222.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Dialister microaerophilus UPII 345-E]
          Length = 199

 Score =  253 bits (647), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 112/190 (58%), Positives = 155/190 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP+VVEQT+ GERSYDIYSRLLK+RI+F+ GQIEDHMA +I AQLLFLEAE+P K+I
Sbjct: 1   MAYVPIVVEQTSHGERSYDIYSRLLKDRIIFLDGQIEDHMANVIIAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVTAGMAIYDTMQ+I+P +ST C+G  ASM ++LL++G KG RFALP++ +
Sbjct: 61  HLYINSPGGVVTAGMAIYDTMQYIRPDVSTICIGSCASMAAVLLTSGAKGKRFALPHSNV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE HA++I++++  LN I  K+ G++ + ++K  +RD+ M+A  A
Sbjct: 121 MIHQPLGGVQGQATEIEIHAREILRLRDELNGILAKHTGQSLDVIKKDTERDNFMTAENA 180

Query: 196 CDWGVVDKVL 205
             +G++DK+L
Sbjct: 181 LKYGLIDKIL 190


>gi|153006264|ref|YP_001380589.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Anaeromyxobacter sp. Fw109-5]
 gi|166201797|sp|A7HFV9|CLPP_ANADF RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|152029837|gb|ABS27605.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Anaeromyxobacter sp. Fw109-5]
          Length = 204

 Score =  253 bits (647), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 114/196 (58%), Positives = 157/196 (80%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVEQT+RGERSYDIYSRLLK+RIVF+   I+D +A ++ AQLLFLE+E+P K+ISLY
Sbjct: 6   MPYVVEQTHRGERSYDIYSRLLKDRIVFLGTPIDDDVANVVIAQLLFLESEDPDKDISLY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VT+G+AIYDTMQ++KP +ST C+GQAASMG+ LL+ G  G RFA+PNARI++H
Sbjct: 66  INSPGGSVTSGLAIYDTMQYVKPQVSTICLGQAASMGAFLLAGGAAGKRFAVPNARIMIH 125

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GGF GQA+DI+  A++I+++K +LN+I  K+  +  E +EK  DRD+ M A EA ++
Sbjct: 126 QPMGGFQGQATDIDIQAREILRLKAKLNDILAKHTKQPLERIEKDTDRDYFMGAGEAKEY 185

Query: 199 GVVDKVLMSRIDIEEK 214
           G++D+V++ +    EK
Sbjct: 186 GLIDEVIVHKPKATEK 201


>gi|56707749|ref|YP_169645.1| ATP-dependent Clp protease proteolytic subunit [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|89256249|ref|YP_513611.1| ATP-dependent Clp protease proteolytic subunit [Francisella
           tularensis subsp. holarctica LVS]
 gi|110670220|ref|YP_666777.1| ATP-dependent Clp protease subunit P [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115314706|ref|YP_763429.1| ATP-dependent Clp protease subunit P [Francisella tularensis subsp.
           holarctica OSU18]
 gi|118497648|ref|YP_898698.1| ATP-dependent Clp protease subunit P [Francisella tularensis subsp.
           novicida U112]
 gi|134302069|ref|YP_001122038.1| ATP-dependent Clp protease subunit P [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|156502310|ref|YP_001428375.1| ATP-dependent Clp protease proteolytic subunit [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|167010854|ref|ZP_02275785.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Francisella
           tularensis subsp. holarctica FSC200]
 gi|187931471|ref|YP_001891455.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Francisella
           tularensis subsp. mediasiatica FSC147]
 gi|194323619|ref|ZP_03057395.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Francisella
           tularensis subsp. novicida FTE]
 gi|224456819|ref|ZP_03665292.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|254367562|ref|ZP_04983588.1| ATP-dependent Clp protease subunit P [Francisella tularensis subsp.
           holarctica 257]
 gi|254369239|ref|ZP_04985251.1| hypothetical protein FTAG_00191 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|254370252|ref|ZP_04986258.1| ATP-dependent Clp protease subunit P [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254373013|ref|ZP_04988502.1| ATP-dependent Clp protease subunit P [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|254374463|ref|ZP_04989944.1| hypothetical protein FTDG_00632 [Francisella novicida GA99-3548]
 gi|254874562|ref|ZP_05247272.1| ATP-dependent clp protease proteolytic subunit [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|290953590|ref|ZP_06558211.1| ATP-dependent Clp protease proteolytic subunit [Francisella
           tularensis subsp. holarctica URFT1]
 gi|295313091|ref|ZP_06803781.1| ATP-dependent Clp protease proteolytic subunit [Francisella
           tularensis subsp. holarctica URFT1]
 gi|67460184|sp|Q5NH47|CLPP_FRATT RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|116243138|sp|Q2A3U1|CLPP_FRATH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|122325271|sp|Q0BM92|CLPP_FRATO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|122971012|sp|Q14IJ9|CLPP_FRAT1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166201822|sp|A7NBR6|CLPP_FRATF RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166201823|sp|A0Q6S9|CLPP_FRATN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166201824|sp|A4IYB6|CLPP_FRATW RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706451|sp|B2SG18|CLPP_FRATM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|56604241|emb|CAG45257.1| ATP-dependent Clp protease subunit P [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89144080|emb|CAJ79331.1| ATP-dependent Clp protease subunit P [Francisella tularensis subsp.
           holarctica LVS]
 gi|110320553|emb|CAL08640.1| ATP-dependent Clp protease subunit P [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115129605|gb|ABI82792.1| endopeptidase Clp [Francisella tularensis subsp. holarctica OSU18]
 gi|118423554|gb|ABK89944.1| ATP-dependent Clp protease subunit P [Francisella novicida U112]
 gi|134049846|gb|ABO46917.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|134253378|gb|EBA52472.1| ATP-dependent Clp protease subunit P [Francisella tularensis subsp.
           holarctica 257]
 gi|151568496|gb|EDN34150.1| ATP-dependent Clp protease subunit P [Francisella tularensis subsp.
           tularensis FSC033]
 gi|151570740|gb|EDN36394.1| ATP-dependent Clp protease subunit P [Francisella novicida
           GA99-3549]
 gi|151572182|gb|EDN37836.1| hypothetical protein FTDG_00632 [Francisella novicida GA99-3548]
 gi|156252913|gb|ABU61419.1| ATP-dependent Clp protease, proteolytic subunit [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|157122189|gb|EDO66329.1| hypothetical protein FTAG_00191 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|187712380|gb|ACD30677.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Francisella
           tularensis subsp. mediasiatica FSC147]
 gi|194321983|gb|EDX19465.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Francisella
           tularensis subsp. novicida FTE]
 gi|254840561|gb|EET18997.1| ATP-dependent clp protease proteolytic subunit [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|282158920|gb|ADA78311.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Francisella
           tularensis subsp. tularensis NE061598]
          Length = 201

 Score =  253 bits (647), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 115/191 (60%), Positives = 152/191 (79%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+E+T  GER++DIYSRLLKERIVF+ G++ DH A L+ AQLLFLE+E+P K+I  
Sbjct: 6   LVPTVIEKTAGGERAFDIYSRLLKERIVFLNGEVNDHSANLVIAQLLFLESEDPDKDIYF 65

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG+VTAGM +YDTMQFIKP +ST C+G AASMGSLLL+ G KG R++LP+++I++
Sbjct: 66  YINSPGGMVTAGMGVYDTMQFIKPDVSTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMI 125

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQASDIE HA++I++IK RLN++   + G+  E + K  DRD+ M A EA  
Sbjct: 126 HQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFMMADEAKA 185

Query: 198 WGVVDKVLMSR 208
           +G++D V+ SR
Sbjct: 186 YGLIDHVIESR 196


>gi|307177704|gb|EFN66732.1| Putative ATP-dependent Clp protease proteolytic subunit,
           mitochondrial [Camponotus floridanus]
          Length = 234

 Score =  253 bits (646), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 116/201 (57%), Positives = 160/201 (79%), Gaps = 1/201 (0%)

Query: 5   GCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLL 64
            C +K S    L  VP+VVEQ+ RGER+YDIYSRLLKERI+ + G I D +++ + AQLL
Sbjct: 13  ACGQKMSSR-NLNFVPIVVEQSGRGERAYDIYSRLLKERIICLMGPITDDVSSAVVAQLL 71

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           FL++E+ +  I LYINSPGG VTAG+ IYDTMQ++ PP+ST+C+GQA SM SLLL+AG K
Sbjct: 72  FLQSESSKNPIHLYINSPGGSVTAGLGIYDTMQYVLPPVSTWCVGQACSMASLLLAAGTK 131

Query: 125 GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
           GMR +LPNARI+ HQPSGG  GQA+DI+  A +I+K+K+++NE+YVK+ G+  E++EK +
Sbjct: 132 GMRHSLPNARIMTHQPSGGVQGQATDIQIQALEIIKLKKQINELYVKHTGQDLEKIEKGM 191

Query: 185 DRDHIMSASEACDWGVVDKVL 205
           +RD+ MS +EA ++G++DKVL
Sbjct: 192 ERDNFMSPTEAKEFGIIDKVL 212


>gi|297569273|ref|YP_003690617.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296925188|gb|ADH85998.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 200

 Score =  253 bits (646), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 112/200 (56%), Positives = 160/200 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT RGERSYDIYSRLLKERI+F+   + D +A +I AQ+LFLEA++P K+I
Sbjct: 1   MSLIPFVIEQTPRGERSYDIYSRLLKERIIFLGTGVNDDVANVIIAQMLFLEADDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           + YINSPGGVVTAG+AIYDTM++IK  ++T C+GQAASMG++LL+AG +G R+ALPN+RI
Sbjct: 61  TFYINSPGGVVTAGLAIYDTMRYIKCDVATLCLGQAASMGAVLLAAGTEGKRYALPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQP GG+ GQASDI+ HA++I+++++ LN I   + G++ + ++K  +RD+ MSA E+
Sbjct: 121 LIHQPMGGYQGQASDIDIHAKEILRMRQDLNRILASHTGQSIKRIQKDTERDYFMSAEES 180

Query: 196 CDWGVVDKVLMSRIDIEEKS 215
             +G++DKVL  R    E+S
Sbjct: 181 KTYGIIDKVLYERTKTSEES 200


>gi|302390303|ref|YP_003826124.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Thermosediminibacter oceani DSM 16646]
 gi|302200931|gb|ADL08501.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Thermosediminibacter oceani DSM 16646]
          Length = 200

 Score =  253 bits (645), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 116/199 (58%), Positives = 157/199 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+V+EQTNRGER+YDIYSRLLK+RIVF+   I+D +A+L+ AQLLFLE+E+P K+I
Sbjct: 1   MSLVPIVIEQTNRGERAYDIYSRLLKDRIVFIGTPIDDSIASLVIAQLLFLESEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG+AIYDTMQ+IKP +ST C+G AASMG++LL+ G  G R ALPN+RI
Sbjct: 61  YLYINSPGGSVTAGLAIYDTMQYIKPDVSTICIGMAASMGAVLLAGGAPGKRLALPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  G+A DIE HA++I++++  LNEI VK+  +  E +E+  +RD+ MSA EA
Sbjct: 121 MIHQPWGGVQGRALDIETHAKEILRLREVLNEILVKHTKQPLERIERDTERDYFMSAVEA 180

Query: 196 CDWGVVDKVLMSRIDIEEK 214
             +G++D+V+  R    EK
Sbjct: 181 KQYGLIDEVIYKRTKAGEK 199


>gi|310657900|ref|YP_003935621.1| clpa-clpp and clpx-clpp ATP-dependent serine protease proteolytic
           subunit [Clostridium sticklandii DSM 519]
 gi|308824678|emb|CBH20716.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Clostridium sticklandii]
          Length = 194

 Score =  253 bits (645), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 113/193 (58%), Positives = 154/193 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP+V+EQT RGERSYDIYSRLLK+RI+F+  Q+ DH A+LI AQLL LE+E+P K+I
Sbjct: 1   MAYVPIVIEQTGRGERSYDIYSRLLKDRIIFLGDQVNDHTASLIVAQLLHLESEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +TAGMAIYDTMQ+IKP ++T C+G AASMG+ LL+AG KG RFALPN+ I
Sbjct: 61  FLYINSPGGSITAGMAIYDTMQYIKPDVATICVGMAASMGAFLLTAGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+ HA+ I++++ +LNEI     G+  E++E+  +RD  MS++EA
Sbjct: 121 MIHQPLGGTQGQATDIKIHAERIIRMRNKLNEIMADRSGQPLEKIERDTERDFFMSSTEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++D+VL  R
Sbjct: 181 KEYGLIDEVLEKR 193


>gi|218779308|ref|YP_002430626.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Desulfatibacillum alkenivorans AK-01]
 gi|259585946|sp|B8FA62|CLPP_DESAA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|218760692|gb|ACL03158.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Desulfatibacillum alkenivorans AK-01]
          Length = 201

 Score =  253 bits (645), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 114/197 (57%), Positives = 158/197 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P VVEQT+RGER+YDIYSRLLK+RI+F+  ++ D +A  I AQLLFLE+++P+K+I
Sbjct: 1   MSYIPYVVEQTSRGERTYDIYSRLLKDRIIFLGTEVNDVVANSIIAQLLFLESDDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           + YINSPGG VTAGMAIYDTM +IKP I+T C+GQAASMG++LL+AG  G R++LPNARI
Sbjct: 61  NFYINSPGGSVTAGMAIYDTMAYIKPEITTVCIGQAASMGAVLLAAGNHGKRYSLPNARI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQP GGF GQASDI   AQ+I+++K  LNEI   + GK  ++V++  DRD+ MS  EA
Sbjct: 121 LIHQPMGGFQGQASDIAIQAQEILRMKEALNEILASHTGKPLKQVQQDTDRDYFMSPLEA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G++D V+++R D++
Sbjct: 181 KEYGLIDHVILNREDLD 197


>gi|182417589|ref|ZP_02948911.1| Clp protease [Clostridium butyricum 5521]
 gi|237667767|ref|ZP_04527751.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182378544|gb|EDT76073.1| Clp protease [Clostridium butyricum 5521]
 gi|237656115|gb|EEP53671.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 201

 Score =  253 bits (645), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 117/201 (58%), Positives = 157/201 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT+RGERSYDI+SRLLKERI+ ++G++ D  A LI AQLLFL++E+P K+I
Sbjct: 1   MSLVPMVVEQTSRGERSYDIFSRLLKERIIMLSGEVNDASAQLIVAQLLFLDSEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG VTAGMAIYDTMQ I   +ST C+G AASMG+ LLS G KG R+ALPNA I
Sbjct: 61  SLYINSPGGSVTAGMAIYDTMQLINADVSTICVGMAASMGAFLLSCGAKGKRYALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQ +DIE HA  ++K+K  LN+   +N GK  E +++  +RD+ MSA +A
Sbjct: 121 MIHQPLGGFQGQVTDIEIHANRMLKVKEVLNKTLSENTGKPLEVIQRDTERDNFMSAEDA 180

Query: 196 CDWGVVDKVLMSRIDIEEKSK 216
            ++G+VD++++ +   +EKS+
Sbjct: 181 KEYGLVDEIIVKKPKNKEKSE 201


>gi|108762291|ref|YP_630243.1| ATP-dependent Clp protease proteolytic subunit [Myxococcus xanthus
           DK 1622]
 gi|116270726|sp|Q1DAT0|CLPP1_MYXXD RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|108466171|gb|ABF91356.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Myxococcus
           xanthus DK 1622]
          Length = 206

 Score =  253 bits (645), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 116/190 (61%), Positives = 157/190 (82%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP V+EQT+RGERSYDIYSRLLK+RIV +  +I+D +A +I AQLLFLE+E+P K+I+LY
Sbjct: 6   VPYVIEQTHRGERSYDIYSRLLKDRIVMLGTEIDDDVANVIVAQLLFLESEDPDKDINLY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDTMQ++K P+ST C+GQAASMG++LL AG KG R+ALP++RI++H
Sbjct: 66  INSPGGSVTAGLAIYDTMQYVKCPVSTICVGQAASMGAVLLLAGAKGKRYALPSSRIMIH 125

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA+DIE  A++I+++K +LNE+ VK+ G++ E VEK  DRD+ M ASEA  +
Sbjct: 126 QPLGGVRGQATDIEIQAKEILRMKAKLNELIVKHTGQSIERVEKDTDRDYFMGASEAKAY 185

Query: 199 GVVDKVLMSR 208
           G++D++   R
Sbjct: 186 GIIDEIQNPR 195


>gi|313892932|ref|ZP_07826509.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442285|gb|EFR60700.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Veillonella sp. oral taxon 158 str. F0412]
          Length = 197

 Score =  253 bits (645), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 117/196 (59%), Positives = 158/196 (80%), Gaps = 1/196 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP+VVEQ+ RGERSYDIYSRLLK+RI+F+ G I+D++A  + AQ+LFLEAE+P K+I LY
Sbjct: 3   VPIVVEQSERGERSYDIYSRLLKDRIIFLGGPIDDNVANAVIAQMLFLEAEDPDKDIHLY 62

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGVVTAGMAIYDTMQ+IKP +ST C+G AASMG++LL+AG KG R+ALP+AR+++H
Sbjct: 63  INSPGGVVTAGMAIYDTMQYIKPDVSTICVGSAASMGAVLLTAGTKGKRYALPHARVMIH 122

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQAS+IE HA++I++++  LN I     G+  E V +  DRD+ MSA +A ++
Sbjct: 123 QPLGGVQGQASEIEIHAREILRMREELNGILASRSGQDIEVVARDTDRDNFMSAQDAVEY 182

Query: 199 GVVDKVLMSRIDIEEK 214
           G++D+VL +R  +E K
Sbjct: 183 GLIDEVL-TREPVESK 197


>gi|238018907|ref|ZP_04599333.1| hypothetical protein VEIDISOL_00767 [Veillonella dispar ATCC 17748]
 gi|237864391|gb|EEP65681.1| hypothetical protein VEIDISOL_00767 [Veillonella dispar ATCC 17748]
          Length = 197

 Score =  252 bits (644), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 117/196 (59%), Positives = 158/196 (80%), Gaps = 1/196 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP+VVEQ+ RGERSYDIYSRLLK+RI+F+ G I+D++A  + AQ+LFLEAE+P K+I LY
Sbjct: 3   VPIVVEQSERGERSYDIYSRLLKDRIIFLGGPIDDNVANAVIAQMLFLEAEDPDKDIHLY 62

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGVVTAGMAIYDTMQ+IKP +ST C+G AASMG++LL+AG KG R+ALP+AR+++H
Sbjct: 63  INSPGGVVTAGMAIYDTMQYIKPDVSTICVGSAASMGAVLLTAGAKGKRYALPHARVMIH 122

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQAS+IE HA++I++++  LN I     G+  E V +  DRD+ MSA +A ++
Sbjct: 123 QPLGGVQGQASEIEIHAREILRMREELNGILASRSGQDIEVVARDTDRDNFMSAQDAVEY 182

Query: 199 GVVDKVLMSRIDIEEK 214
           G++D+VL +R  +E K
Sbjct: 183 GLIDEVL-TREPVESK 197


>gi|150018814|ref|YP_001311068.1| endopeptidase Clp [Clostridium beijerinckii NCIMB 8052]
 gi|149905279|gb|ABR36112.1| Endopeptidase Clp [Clostridium beijerinckii NCIMB 8052]
          Length = 192

 Score =  252 bits (644), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 114/192 (59%), Positives = 151/192 (78%), Gaps = 2/192 (1%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VPMV+EQT+RGERSYDIYSRLLKERI+ ++ Q+ D  A++I +QLLFLE+ENP  +I
Sbjct: 1   MSYVPMVIEQTSRGERSYDIYSRLLKERIIMLSDQVSDSTASIITSQLLFLESENPDGDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG +TAGMAIYDTMQ+IKP +ST C+G AASMGS LL+AG  G R+ALPN+ I
Sbjct: 61  HFYINSPGGSITAGMAIYDTMQYIKPDVSTICLGLAASMGSFLLAAGAPGKRYALPNSEI 120

Query: 136 LLHQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           L+HQPS  GGF GQA+DI  H + ++K K ++N+IY +   K  EE+E+ ++RD+ MSA 
Sbjct: 121 LIHQPSVHGGFQGQATDIRIHTEWLLKTKNKINKIYSEKTKKPIEEIERDMERDYFMSAK 180

Query: 194 EACDWGVVDKVL 205
           EA  +G++DK+L
Sbjct: 181 EALSYGIIDKIL 192


>gi|269798318|ref|YP_003312218.1| ATP-dependent Clp protease proteolytic subunit ClpP [Veillonella
           parvula DSM 2008]
 gi|269094947|gb|ACZ24938.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
           parvula DSM 2008]
          Length = 197

 Score =  252 bits (644), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 118/196 (60%), Positives = 157/196 (80%), Gaps = 1/196 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP+VVEQ  RGERSYDIYSRLLK+RI+F+ G I+D++A  + AQ+LFLEAE+P K+I LY
Sbjct: 3   VPIVVEQGERGERSYDIYSRLLKDRIIFLGGPIDDNVANAVIAQMLFLEAEDPDKDIHLY 62

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGVVTAGMAIYDTMQ+IKP +ST C+G AASMG++LL+AG KG R+ALP+ARI++H
Sbjct: 63  INSPGGVVTAGMAIYDTMQYIKPDVSTICVGSAASMGAVLLTAGTKGKRYALPHARIMIH 122

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQAS+IE HA++I++++  LN I     G+  E V +  DRD+ MSA +A ++
Sbjct: 123 QPLGGVQGQASEIEIHAREILRMREELNGILASRSGQDIEVVARDTDRDNFMSAQDAVEY 182

Query: 199 GVVDKVLMSRIDIEEK 214
           G++D+VL +R  +E K
Sbjct: 183 GLIDEVL-TRESVESK 197


>gi|295677486|ref|YP_003606010.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           sp. CCGE1002]
 gi|295437329|gb|ADG16499.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           sp. CCGE1002]
          Length = 215

 Score =  252 bits (644), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 114/193 (59%), Positives = 153/193 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LGLVP V+EQ+ RGER+YDIYSRLL+ERIVF+ G + +  A+LI AQLLFLE+ENP K+I
Sbjct: 11  LGLVPTVIEQSGRGERAYDIYSRLLRERIVFLVGPVNEQSASLIVAQLLFLESENPDKDI 70

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S YINSPGG V  G+AIYDTMQFIKP +ST C G AASMG+ LL+AG++G R+ALPNARI
Sbjct: 71  SFYINSPGGSVYDGLAIYDTMQFIKPEVSTLCTGFAASMGTFLLTAGQRGKRYALPNARI 130

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  G A+DIE  A++++ ++ RLN +  +  G+T +++ +  DRD+ MSA EA
Sbjct: 131 MIHQPSGGGQGTAADIEIQAKEVLYVRARLNAMMAERTGRTIDDIARDTDRDNFMSALEA 190

Query: 196 CDWGVVDKVLMSR 208
            ++G++D VL +R
Sbjct: 191 REYGLIDDVLEAR 203


>gi|255102472|ref|ZP_05331449.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile QCD-63q42]
          Length = 194

 Score =  252 bits (644), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 117/193 (60%), Positives = 152/193 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQT RGERSYDI+SRLLK+RI+F+  Q+ D  A LI AQLLFLEAE+P K+I
Sbjct: 1   MALVPVVVEQTGRGERSYDIFSRLLKDRIIFLGDQVNDATAGLIVAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +T+GMAIYDTMQ+IKP +ST C+G AASMG+ LL+AG KG R ALPN+ I
Sbjct: 61  HLYINSPGGSITSGMAIYDTMQYIKPDVSTICIGMAASMGAFLLAAGAKGKRLALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DIE HA+ I+KIK  LNEI+ +  G+  E+++   +RD+ MSA EA
Sbjct: 121 MIHQPLGGAQGQATDIEIHAKRILKIKETLNEIFSERTGQPLEKIKMDTERDNFMSALEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++D+V   R
Sbjct: 181 KEYGLIDEVFTKR 193


>gi|219885303|gb|ACL53026.1| unknown [Zea mays]
          Length = 302

 Score =  252 bits (644), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 117/192 (60%), Positives = 155/192 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+E T+RGER+YDI SRLLKERIV + G I D  A+L+ AQLLFLE+ENP K + 
Sbjct: 76  GLVPMVIETTSRGERAYDILSRLLKERIVCIHGPIADDTASLVVAQLLFLESENPLKPVH 135

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGVVTAG+AIYDTMQ+I+ P++T C+GQAASMGSLLL+AG  G R ALPNAR++
Sbjct: 136 LYINSPGGVVTAGLAIYDTMQYIRCPVTTLCIGQAASMGSLLLAAGAPGERRALPNARVM 195

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  GQA+DI   A++I+K++ RLN+IY K+  +  +++E+ ++RD  M   EA 
Sbjct: 196 IHQPSGGAQGQATDIAIQAKEILKMRDRLNKIYQKHTRQPIDKIEQCMERDLFMDPEEAR 255

Query: 197 DWGVVDKVLMSR 208
           DWG++D+V+ +R
Sbjct: 256 DWGLIDEVIENR 267


>gi|303229413|ref|ZP_07316203.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
           atypica ACS-134-V-Col7a]
 gi|303231336|ref|ZP_07318070.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302513932|gb|EFL55940.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302515949|gb|EFL57901.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
           atypica ACS-134-V-Col7a]
          Length = 197

 Score =  252 bits (644), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 118/196 (60%), Positives = 157/196 (80%), Gaps = 1/196 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP+VVEQ  RGERSYDIYSRLLK+RI+F+ G I+D++A  + AQ+LFLEAE+P K+I LY
Sbjct: 3   VPIVVEQGERGERSYDIYSRLLKDRIIFLGGPIDDNVANAVIAQMLFLEAEDPDKDIHLY 62

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGVVTAGMAIYDTMQ+IKP +ST C+G AASMG++LL+AG KG RFALP+AR+++H
Sbjct: 63  INSPGGVVTAGMAIYDTMQYIKPDVSTICVGSAASMGAVLLTAGAKGKRFALPHARVMIH 122

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQAS+IE HA++I++++  LN I     G+  E V +  DRD+ MSA +A ++
Sbjct: 123 QPLGGVQGQASEIEIHAREILRMREELNGILAARSGQDIEVVARDTDRDNFMSAQDAVEY 182

Query: 199 GVVDKVLMSRIDIEEK 214
           G++D+VL +R  +E K
Sbjct: 183 GLIDEVL-TRDTLESK 197


>gi|209517482|ref|ZP_03266323.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           sp. H160]
 gi|209502136|gb|EEA02151.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           sp. H160]
          Length = 218

 Score =  252 bits (644), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 114/193 (59%), Positives = 152/193 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LGLVP V+EQ+ RGER+YDIYSRLL+ERIVF+ G + +  A+LI AQLLFLE+ENP K+I
Sbjct: 11  LGLVPTVIEQSGRGERAYDIYSRLLRERIVFLVGPVNEQSASLIVAQLLFLESENPDKDI 70

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG V  G+AIYDTMQFIKP +ST C G AASMG+ LL+AG++G R+ALPNARI
Sbjct: 71  CFYINSPGGSVYDGLAIYDTMQFIKPEVSTLCTGFAASMGTFLLTAGQRGKRYALPNARI 130

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  G A+D+E  A++++ ++ RLN +  +  G++ EE+ +  DRD+ MSA EA
Sbjct: 131 MIHQPSGGGQGTAADVEIQAKEVLYVRARLNAMMAERTGRSIEEISRDTDRDNFMSALEA 190

Query: 196 CDWGVVDKVLMSR 208
            D+G++D VL +R
Sbjct: 191 RDYGLIDDVLEAR 203


>gi|167627759|ref|YP_001678259.1| ATP-dependent Clp protease proteolytic subunit [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|241668323|ref|ZP_04755901.1| endopeptidase Clp [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254876856|ref|ZP_05249566.1| ATP-dependent Clp protease subunit P [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|189082458|sp|B0TZA5|CLPP_FRAP2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|167597760|gb|ABZ87758.1| Endopeptidase Clp [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
 gi|254842877|gb|EET21291.1| ATP-dependent Clp protease subunit P [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 201

 Score =  252 bits (644), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 113/191 (59%), Positives = 153/191 (80%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+E+T  GER++DIYSRLLKERIVF+ G++ DH A L+ AQLLFLE+E+P K+I  
Sbjct: 6   LVPTVIEKTAGGERAFDIYSRLLKERIVFLNGEVNDHSANLVIAQLLFLESEDPDKDIYF 65

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG+VTAGM +YDTMQFIKP ++T C+G AASMGSLLL+ G KG R++LP+++I++
Sbjct: 66  YINSPGGMVTAGMGVYDTMQFIKPDVNTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMI 125

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQASDIE HA++I++IK RLN++   + G+  E + +  DRD+ M A EA +
Sbjct: 126 HQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVRDTDRDNFMMADEAKE 185

Query: 198 WGVVDKVLMSR 208
           +G++D V+ SR
Sbjct: 186 YGLIDHVIESR 196


>gi|226314841|ref|YP_002774737.1| ATP-dependent Clp protease proteolytic subunit [Brevibacillus
           brevis NBRC 100599]
 gi|226097791|dbj|BAH46233.1| ATP-dependent Clp protease proteolytic subunit [Brevibacillus
           brevis NBRC 100599]
          Length = 198

 Score =  252 bits (643), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 113/192 (58%), Positives = 152/192 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RI+F+   I D +A ++ AQLLFL+AE+P+K+I
Sbjct: 1   MNLIPTVIEQTNRGERAYDIYSRLLKDRIIFLGTPINDTVANIVVAQLLFLQAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +TAGMAIYDTM FIKP +ST C+G AASMG+ LL+AG KG RFALPN+ +
Sbjct: 61  HLYINSPGGSITAGMAIYDTMHFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDIE  A+ I+K++  LN I  +  G+  E ++K  DRD+ +SA+EA
Sbjct: 121 MIHQPLGGAQGQASDIEIAAKRILKMRDHLNTILAERTGQPLERIQKDTDRDNFLSAAEA 180

Query: 196 CDWGVVDKVLMS 207
            ++G++DKV+ S
Sbjct: 181 VEYGLIDKVITS 192


>gi|32490904|ref|NP_871158.1| hypothetical protein WGLp155 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|31340011|sp|Q8D346|CLPP_WIGBR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|25166110|dbj|BAC24301.1| clpP [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 194

 Score =  252 bits (643), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 115/193 (59%), Positives = 156/193 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P VVE+  RGERSYDI+SRLLKERI+FVTG+IED+MA LI AQ++FLE+E+P+K+I
Sbjct: 1   MNLIPTVVEKNARGERSYDIFSRLLKERIIFVTGKIEDYMANLIIAQMIFLESEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVT+GM+IYDTMQFIK  +ST C+GQ++SM +L+L++GEKG RF+LPNARI
Sbjct: 61  FLYINSPGGVVTSGMSIYDTMQFIKCEVSTLCIGQSSSMAALILASGEKGKRFSLPNARI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI  H  +I+KIK+ + E+  K+ G++ E + K  +RD   S SEA
Sbjct: 121 MIHQPLGGSQGQATDIAIHTTEILKIKKCMIELLSKHTGQSAEIISKDTERDRFFSGSEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++DKV+  R
Sbjct: 181 VIYGLIDKVITCR 193


>gi|225025229|ref|ZP_03714421.1| hypothetical protein EIKCOROL_02126 [Eikenella corrodens ATCC
           23834]
 gi|224941987|gb|EEG23196.1| hypothetical protein EIKCOROL_02126 [Eikenella corrodens ATCC
           23834]
          Length = 206

 Score =  252 bits (643), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 122/197 (61%), Positives = 162/197 (82%), Gaps = 2/197 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ+ RGER++DIYSRLLKERI+F+ G + D  A L+ AQLLFLE+ENP K+I L
Sbjct: 10  LVPTVIEQSGRGERAFDIYSRLLKERIIFLVGPVNDQTANLVVAQLLFLESENPDKDIFL 69

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AGM+IYDTM FIKP +ST C+GQAASMG+ LLSAG +G RFALPN+R+++
Sbjct: 70  YINSPGGSVSAGMSIYDTMNFIKPDVSTLCLGQAASMGAFLLSAGAEGKRFALPNSRVMI 129

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASDIE HA++++K+K +LN++  ++CG+T +E+E+  DRD+ MSA EA
Sbjct: 130 HQPLISGGLGGQASDIEIHAKELLKLKVKLNQLLAEHCGRTLDELERDTDRDNFMSAEEA 189

Query: 196 CDWGVVDKVLMSRIDIE 212
             +G++D+VL SR DI+
Sbjct: 190 QAYGLIDQVLSSRSDIK 206


>gi|257460311|ref|ZP_05625414.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           gracilis RM3268]
 gi|257442376|gb|EEV17516.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           gracilis RM3268]
          Length = 194

 Score =  252 bits (643), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 116/188 (61%), Positives = 152/188 (80%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+EQT+RGERSYDIYSRLLK+RIV ++G+I+D +A+ I AQLLFLEAE+P K+I L
Sbjct: 2   VIPYVIEQTSRGERSYDIYSRLLKDRIVMLSGEIDDAVASSIVAQLLFLEAEDPDKDIYL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G +IYDTM +IKP +ST C+GQAASMG+ LLS G KG R+ALPN+RI++
Sbjct: 62  YINSPGGVVTSGFSIYDTMNYIKPDVSTICIGQAASMGAFLLSCGAKGKRYALPNSRIMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+++K  LN I  +N GK   +VEK  DRD  MSA +A  
Sbjct: 122 HQPLGGAQGQATDIEIQAKEILRMKEILNGILSQNSGKDLAQVEKDTDRDFFMSAEDAVQ 181

Query: 198 WGVVDKVL 205
           +G++D+VL
Sbjct: 182 YGLIDQVL 189


>gi|307107893|gb|EFN56134.1| hypothetical protein CHLNCDRAFT_56121 [Chlorella variabilis]
          Length = 209

 Score =  252 bits (643), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 116/191 (60%), Positives = 158/191 (82%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP+V+E T+RGER++DIYSRLL+ERIV V G I+DH++ LI AQLL+LE+ENP+K ISL
Sbjct: 1   MVPVVIESTSRGERAFDIYSRLLRERIVCVNGPIDDHLSNLIVAQLLYLESENPEKPISL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVTAG+AIYDTMQ+I+ P+ T  +GQAASM SLLL+AGE G R +LP++R+++
Sbjct: 61  YINSPGGVVTAGLAIYDTMQYIRCPVGTLAVGQAASMASLLLAAGEAGQRRSLPHSRVMV 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQA+DI   A++I+K++  LN +YVK+ G+T + VE+ L+RD  MSA EA +
Sbjct: 121 HQPSGGARGQATDIAIAAKEILKMRELLNGLYVKHTGQTAQRVEEVLERDFFMSAPEARE 180

Query: 198 WGVVDKVLMSR 208
           +G+VD+V+  R
Sbjct: 181 FGIVDEVIEQR 191


>gi|328676003|gb|AEB28678.1| ATP-dependent Clp protease proteolytic subunit [Francisella cf.
           novicida 3523]
          Length = 201

 Score =  252 bits (643), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 114/191 (59%), Positives = 152/191 (79%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+E+T  GER++DIYSRLLKERIVF+ G++ DH A L+ AQLLFLE+E+P K+I  
Sbjct: 6   LVPTVIEKTAGGERAFDIYSRLLKERIVFLNGEVNDHSANLVIAQLLFLESEDPDKDIYF 65

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG+VTAGM +YDTMQFIKP +ST C+G AASMGSLLL+ G KG R++LP+++I++
Sbjct: 66  YINSPGGMVTAGMGVYDTMQFIKPDVSTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMI 125

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQASDIE HA++I++IK RLN++   + G+  + + K  DRD+ M A EA  
Sbjct: 126 HQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLDTIIKDTDRDNFMMADEAKA 185

Query: 198 WGVVDKVLMSR 208
           +G++D V+ SR
Sbjct: 186 YGLIDHVIESR 196


>gi|242309637|ref|ZP_04808792.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter
           pullorum MIT 98-5489]
 gi|239523638|gb|EEQ63504.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter
           pullorum MIT 98-5489]
          Length = 196

 Score =  252 bits (643), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 115/187 (61%), Positives = 151/187 (80%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP+V+E+T RGERSYDIYSRLLK+RI+ ++GQI+D +A+ I AQLLFLEAE+PQK+I LY
Sbjct: 5   VPIVIEKTGRGERSYDIYSRLLKDRIIMLSGQIDDGIASSIVAQLLFLEAEDPQKDIYLY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGVVT+G++IYDTM +IKP I T C+GQAASMG+ LLS G KG R++LPN+RI++H
Sbjct: 65  INSPGGVVTSGLSIYDTMNYIKPDICTICIGQAASMGAFLLSCGTKGKRYSLPNSRIMIH 124

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA+DIE  A++I+++K  LNEI   N  ++ E++ K  DRD  MSA EA  +
Sbjct: 125 QPLGGAQGQATDIEIQAKEILRLKATLNEILAANTNQSLEKISKDTDRDFFMSAQEAKKY 184

Query: 199 GVVDKVL 205
           G++D VL
Sbjct: 185 GLIDNVL 191


>gi|225389281|ref|ZP_03759005.1| hypothetical protein CLOSTASPAR_03027 [Clostridium asparagiforme
           DSM 15981]
 gi|225044660|gb|EEG54906.1| hypothetical protein CLOSTASPAR_03027 [Clostridium asparagiforme
           DSM 15981]
          Length = 193

 Score =  252 bits (643), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 116/190 (61%), Positives = 154/190 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLLKERI+F+  ++ D  A+LI AQLLFLEAE+P K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLKERIIFLGEEVNDVSASLIVAQLLFLEAEDPGKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGG VTAGMAIYDTM +IK  +ST C+G AASMG+ LLS G KG RF+LPN++I
Sbjct: 61  NLYINSPGGSVTAGMAIYDTMNYIKSDVSTICIGMAASMGAFLLSGGAKGKRFSLPNSQI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I+  A++I+K KR+LNEI   N GK  E +E+  +RD+ MSA EA
Sbjct: 121 MIHQPSGGAQGQATEIKIVAENILKTKRKLNEILAANTGKPLEVIERDTERDYYMSAEEA 180

Query: 196 CDWGVVDKVL 205
            ++G++D+++
Sbjct: 181 REYGLIDQII 190


>gi|224419236|ref|ZP_03657242.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter
           canadensis MIT 98-5491]
 gi|253826954|ref|ZP_04869839.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter
           canadensis MIT 98-5491]
 gi|313142738|ref|ZP_07804931.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter
           canadensis MIT 98-5491]
 gi|253510360|gb|EES89019.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter
           canadensis MIT 98-5491]
 gi|313131769|gb|EFR49386.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter
           canadensis MIT 98-5491]
          Length = 196

 Score =  252 bits (643), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 114/187 (60%), Positives = 151/187 (80%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP+V+E+T RGERSYDIYSRLLK+RI+ ++GQI+D +A  I +QLLFLEAE+PQK+I LY
Sbjct: 5   VPIVIEKTGRGERSYDIYSRLLKDRIIMLSGQIDDGVAASIVSQLLFLEAEDPQKDIYLY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGVVT+G++IYDTM +IKP I T C+GQAASMG+ LLS G KG R++LPN+RI++H
Sbjct: 65  INSPGGVVTSGLSIYDTMNYIKPDICTICIGQAASMGAFLLSCGTKGKRYSLPNSRIMIH 124

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA+DIE  A++I+++K  LNEI   N  ++ E++ K  DRD  MSA EA D+
Sbjct: 125 QPLGGAQGQATDIEIQAKEILRLKATLNEILADNTNQSLEKIAKDTDRDFFMSAKEAKDY 184

Query: 199 GVVDKVL 205
           G++D +L
Sbjct: 185 GLIDNIL 191


>gi|167521860|ref|XP_001745268.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776226|gb|EDQ89846.1| predicted protein [Monosiga brevicollis MX1]
          Length = 209

 Score =  252 bits (643), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 114/188 (60%), Positives = 152/188 (80%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MVVE T  GER++DIYSRLL+ERIV + G ++D MA+ I AQLL LE+ENP + +S+YIN
Sbjct: 1   MVVESTPVGERAFDIYSRLLRERIVCLMGPVDDAMASTIVAQLLHLESENPDEPVSVYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGG VTAG+AIYDT+Q+I+P I+T C GQA SMGSLLL+AG  G R+ALPN+RI++HQP
Sbjct: 61  SPGGSVTAGLAIYDTLQYIRPRITTVCSGQACSMGSLLLTAGSPGHRYALPNSRIMVHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
           SGG  GQASDI  HA++I+K+K  +N +Y  + G+TY+E+E  LDRD  MSA EA D+G+
Sbjct: 121 SGGARGQASDIAIHAEEILKLKTTINNLYAHHTGRTYDEIEAALDRDRFMSAQEAKDFGL 180

Query: 201 VDKVLMSR 208
           +D++++SR
Sbjct: 181 IDQIVVSR 188


>gi|315924138|ref|ZP_07920364.1| ATP-dependent Clp protease, protease subunit [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315622540|gb|EFV02495.1| ATP-dependent Clp protease, protease subunit [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 194

 Score =  252 bits (643), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 117/193 (60%), Positives = 150/193 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMV+EQT RGERS+DIYSRLLKERIVF+ G+I D  A+L+ AQL+FLEAENP ++I
Sbjct: 1   MNLVPMVIEQTGRGERSFDIYSRLLKERIVFLDGEITDETASLVVAQLVFLEAENPDEDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG VTAG AI DTM FIK  +ST C G AASMG+ LL+AG KG R ALPNA I
Sbjct: 61  FMYINSPGGSVTAGFAIMDTMNFIKCDVSTLCYGMAASMGAFLLAAGAKGKRQALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQ+SD+E HA+ +++ K +LN I  +N G+++E + K  DRDH MSA EA
Sbjct: 121 MIHQPLGGAQGQSSDVEIHARHLLETKEKLNRILSENSGQSFETIVKDTDRDHFMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D+V+ SR
Sbjct: 181 KTYGLIDQVITSR 193


>gi|223996651|ref|XP_002287999.1| catalytic subunit of clp protein superfamily [Thalassiosira
           pseudonana CCMP1335]
 gi|220977115|gb|EED95442.1| catalytic subunit of clp protein superfamily [Thalassiosira
           pseudonana CCMP1335]
          Length = 191

 Score =  252 bits (643), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 114/191 (59%), Positives = 150/191 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+V+E    GER++DIYSRLL+ERI+ V G++ D MA+L+ AQLLFLEAE P+K + +
Sbjct: 1   LVPVVLESGTTGERAFDIYSRLLRERIICVHGEVTDSMASLVTAQLLFLEAEAPEKPVYM 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG+VTAGMA+YDTMQ+I P + T CMGQAASMGSLLL+ G  G RFALPNARI+L
Sbjct: 61  YINSPGGLVTAGMAMYDTMQYIHPEVHTICMGQAASMGSLLLAGGSAGCRFALPNARIML 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  G ASDI+  A++I++ +  LN++YV + G+  EE+E+ +DRD  M   +A D
Sbjct: 121 HQPSGGAQGMASDIDIQAREILRTRANLNQLYVHHTGRELEEIERVMDRDTFMDVRQAVD 180

Query: 198 WGVVDKVLMSR 208
           +GV+D+VL  R
Sbjct: 181 FGVIDEVLTKR 191


>gi|116243156|sp|Q21Y67|CLPP_RHOFD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
          Length = 202

 Score =  251 bits (642), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 109/193 (56%), Positives = 154/193 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG+VPMV+EQ+ RGERSYDIYSRLLKER++F+ G + D++A L+ AQLLFLE++NP K+I
Sbjct: 9   LGMVPMVIEQSGRGERSYDIYSRLLKERVIFLVGPVNDYVANLVVAQLLFLESDNPDKDI 68

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S YINSPGG V+AGMAI+DTM F+KP +ST C G AASMG+ LL+AG KG RF+LPN+++
Sbjct: 69  SFYINSPGGSVSAGMAIFDTMNFVKPDVSTLCTGMAASMGAFLLAAGAKGKRFSLPNSKV 128

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++IE  A++I+K + +LN+I  +  G+    +E+  +RD+ MSA E 
Sbjct: 129 MIHQPSGGSQGQATEIEIQAREILKTREQLNKILAERTGQPLARIERDTERDYYMSADEC 188

Query: 196 CDWGVVDKVLMSR 208
            ++G++D+V+  R
Sbjct: 189 KEYGLIDQVISKR 201


>gi|208434705|ref|YP_002266371.1| ATP-dependent clp protease proteolytic component [Helicobacter
           pylori G27]
 gi|210134994|ref|YP_002301433.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           P12]
 gi|217032887|ref|ZP_03438364.1| hypothetical protein HPB128_152g4 [Helicobacter pylori B128]
 gi|298736497|ref|YP_003729023.1| ATP-dependent Clp protease, protease subunit [Helicobacter pylori
           B8]
 gi|116243140|sp|Q1CT76|CLPP_HELPH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706454|sp|B5Z7F6|CLPP_HELPG RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|208432634|gb|ACI27505.1| ATP-dependent clp protease proteolytic component [Helicobacter
           pylori G27]
 gi|210132962|gb|ACJ07953.1| ATP-dependent clp protease proteolytic component [Helicobacter
           pylori P12]
 gi|216945381|gb|EEC24049.1| hypothetical protein HPB128_152g4 [Helicobacter pylori B128]
 gi|298355687|emb|CBI66559.1| ATP-dependent Clp protease, protease subunit [Helicobacter pylori
           B8]
 gi|317009196|gb|ADU79776.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           India7]
 gi|317011009|gb|ADU84756.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           SouthAfrica7]
 gi|317012604|gb|ADU83212.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           Lithuania75]
 gi|317178846|dbj|BAJ56634.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           F30]
          Length = 195

 Score =  251 bits (642), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 113/194 (58%), Positives = 155/194 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +G +P V+E T+RGERSYDIYSRLLK+RIV ++G+I D +A+ I AQLLFLEAE+P+K+I
Sbjct: 1   MGYIPYVIENTDRGERSYDIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+T+G++IYDTM FI+P +ST C+GQAASMG+ LLS G KG RF+LP++RI
Sbjct: 61  GLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDIE  + +I+++K  +N I  +N G++ E++ K  DRD  MSA EA
Sbjct: 121 MIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEA 180

Query: 196 CDWGVVDKVLMSRI 209
            ++G++DKVL   +
Sbjct: 181 KEYGLIDKVLQKNV 194


>gi|56964790|ref|YP_176521.1| ATP-dependent Clp protease proteolytic subunit [Bacillus clausii
           KSM-K16]
 gi|67460456|sp|Q5WDK0|CLPP2_BACSK RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|56911033|dbj|BAD65560.1| ATP-dependent Clp protease proteolytic subunit [Bacillus clausii
           KSM-K16]
          Length = 195

 Score =  251 bits (642), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 108/190 (56%), Positives = 154/190 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RI+ +   ++D++A  I AQ+LFL+AE+P+K+I
Sbjct: 1   MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSGVDDNVANSIVAQMLFLQAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG +TAGMAIYDTMQFIKP +ST C+G AASMG+ LL+AG KG R ALPN+ +
Sbjct: 61  SLYINSPGGSITAGMAIYDTMQFIKPDVSTICIGMAASMGAFLLTAGAKGKRMALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+D+E HA+ I++++ +LN+I  +  G+ YE + +  DRD+ M+A +A
Sbjct: 121 MIHQPLGGMQGQAADMEIHARRIIQMREKLNQIMAERSGQPYERIARDTDRDNFMTAEQA 180

Query: 196 CDWGVVDKVL 205
            ++G++DKV+
Sbjct: 181 KEYGLIDKVI 190


>gi|89900346|ref|YP_522817.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhodoferax
           ferrireducens T118]
 gi|89345083|gb|ABD69286.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rhodoferax
           ferrireducens T118]
          Length = 209

 Score =  251 bits (642), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 109/193 (56%), Positives = 154/193 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG+VPMV+EQ+ RGERSYDIYSRLLKER++F+ G + D++A L+ AQLLFLE++NP K+I
Sbjct: 16  LGMVPMVIEQSGRGERSYDIYSRLLKERVIFLVGPVNDYVANLVVAQLLFLESDNPDKDI 75

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S YINSPGG V+AGMAI+DTM F+KP +ST C G AASMG+ LL+AG KG RF+LPN+++
Sbjct: 76  SFYINSPGGSVSAGMAIFDTMNFVKPDVSTLCTGMAASMGAFLLAAGAKGKRFSLPNSKV 135

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++IE  A++I+K + +LN+I  +  G+    +E+  +RD+ MSA E 
Sbjct: 136 MIHQPSGGSQGQATEIEIQAREILKTREQLNKILAERTGQPLARIERDTERDYYMSADEC 195

Query: 196 CDWGVVDKVLMSR 208
            ++G++D+V+  R
Sbjct: 196 KEYGLIDQVISKR 208


>gi|282850557|ref|ZP_06259936.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
           parvula ATCC 17745]
 gi|294792182|ref|ZP_06757330.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
           sp. 6_1_27]
 gi|294794047|ref|ZP_06759184.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
           sp. 3_1_44]
 gi|282580050|gb|EFB85454.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
           parvula ATCC 17745]
 gi|294455617|gb|EFG23989.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
           sp. 3_1_44]
 gi|294457412|gb|EFG25774.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
           sp. 6_1_27]
          Length = 197

 Score =  251 bits (642), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 118/196 (60%), Positives = 157/196 (80%), Gaps = 1/196 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP+VVEQ  RGERSYDIYSRLLK+RI+F+ G I+D++A  + AQ+LFLEAE+P K+I LY
Sbjct: 3   VPIVVEQGERGERSYDIYSRLLKDRIIFLGGPIDDNVANAVIAQMLFLEAEDPDKDIHLY 62

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGVVTAGMAIYDTMQ+IKP +ST C+G AASMG++LL+AG KG R+ALP+ARI++H
Sbjct: 63  INSPGGVVTAGMAIYDTMQYIKPDVSTICVGSAASMGAVLLTAGTKGKRYALPHARIMIH 122

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQAS+IE HA++I++++  LN I     G+  E V +  DRD+ MSA +A ++
Sbjct: 123 QPLGGVQGQASEIEIHAREILRMREELNGILASRSGQDIEVVARDTDRDNFMSAQDAVEY 182

Query: 199 GVVDKVLMSRIDIEEK 214
           G++D+VL +R  +E K
Sbjct: 183 GLIDEVL-TREPVESK 197


>gi|238923369|ref|YP_002936885.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Eubacterium
           rectale ATCC 33656]
 gi|259585954|sp|C4ZGF4|CLPP_EUBR3 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|238875044|gb|ACR74751.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Eubacterium
           rectale ATCC 33656]
 gi|291525457|emb|CBK91044.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Eubacterium
           rectale DSM 17629]
 gi|291528435|emb|CBK94021.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Eubacterium
           rectale M104/1]
          Length = 193

 Score =  251 bits (642), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 113/193 (58%), Positives = 154/193 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGER+YDIYSRLLK+RI+F+  ++ +  A+L+ AQLLFLE+E+P K+I
Sbjct: 1   MSLVPYVIEQTSRGERNYDIYSRLLKDRIIFLGEEVNETTASLVVAQLLFLESEDPNKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG+VTAG+AIYDTMQ+IK  +ST C+G AASMG+ LL+ G KG R+ALPNA I
Sbjct: 61  HLYINSPGGMVTAGLAIYDTMQYIKCDVSTICIGLAASMGAFLLAGGAKGKRYALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I+  A++I+K K+RLNEI   N GK YE +    +RD+ MSA EA
Sbjct: 121 MIHQPSGGAKGQATEIQIAAENILKTKKRLNEILAANTGKPYETIAADTERDNYMSAQEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++D V+ +R
Sbjct: 181 AEYGLIDSVITNR 193


>gi|255523909|ref|ZP_05390872.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           carboxidivorans P7]
 gi|296185149|ref|ZP_06853559.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           carboxidivorans P7]
 gi|255512340|gb|EET88617.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           carboxidivorans P7]
 gi|296049983|gb|EFG89407.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           carboxidivorans P7]
          Length = 194

 Score =  251 bits (642), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 114/192 (59%), Positives = 152/192 (79%), Gaps = 2/192 (1%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP+V+E TN GERSYDIYSRLLK+RI+ + G++ D  A++I AQLLFLEA NP ++I
Sbjct: 1   MSYVPVVIEHTNSGERSYDIYSRLLKDRIIMLNGEVTDASASVIVAQLLFLEANNPDEDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG +TAGMAIYDTMQ+IK  +ST C+G AASMGS LL+AGE G R+ALPN+ I
Sbjct: 61  HFYINSPGGSITAGMAIYDTMQYIKSDVSTICVGMAASMGSFLLAAGEPGKRYALPNSEI 120

Query: 136 LLHQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           L+HQPS  GGF GQA+DI+ H   ++K K+++N+IY +  GK  E++EK ++RD+ MSA 
Sbjct: 121 LIHQPSVYGGFQGQATDIKIHTDWLLKTKKKMNKIYSEKTGKPIEQIEKDMERDYFMSAK 180

Query: 194 EACDWGVVDKVL 205
           EA ++G+VDK+L
Sbjct: 181 EAVEYGLVDKIL 192


>gi|298531141|ref|ZP_07018542.1| Endopeptidase Clp [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509164|gb|EFI33069.1| Endopeptidase Clp [Desulfonatronospira thiodismutans ASO3-1]
          Length = 213

 Score =  251 bits (642), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 110/196 (56%), Positives = 155/196 (79%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
            PMV+    R ERSYDI+SRLLK+RI+F+   ++D +A L+CAQLLFLE+E+ + EI+LY
Sbjct: 4   TPMVIHSEGRNERSYDIFSRLLKDRIIFIGVPVDDQLANLVCAQLLFLESESSEMEINLY 63

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAGMAIYD++Q+I  P++T CMGQA+SMG+LLL+AG+KGMR+ALP++RIL+H
Sbjct: 64  INSPGGSVTAGMAIYDSIQYISAPVATLCMGQASSMGALLLAAGQKGMRYALPHSRILIH 123

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GGF GQA+DI+ HA++I++IK+ +N I   + GK    VE  +DRD+ M  +EA ++
Sbjct: 124 QPLGGFQGQAADIDIHAREIIRIKQEINAIMAHHTGKDMATVEHDMDRDYFMGPAEAKEY 183

Query: 199 GVVDKVLMSRIDIEEK 214
           G++D VL +R  +E +
Sbjct: 184 GIIDHVLTTRAGLEGR 199


>gi|15645413|ref|NP_207587.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           26695]
 gi|108563204|ref|YP_627520.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           HPAG1]
 gi|207108488|ref|ZP_03242650.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           HPKX_438_CA4C1]
 gi|2493736|sp|P56156|CLPP_HELPY RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|185177747|pdb|2ZL0|A Chain A, Crystal Structure Of H.Pylori Clpp
 gi|185177748|pdb|2ZL0|B Chain B, Crystal Structure Of H.Pylori Clpp
 gi|185177749|pdb|2ZL0|C Chain C, Crystal Structure Of H.Pylori Clpp
 gi|185177750|pdb|2ZL0|D Chain D, Crystal Structure Of H.Pylori Clpp
 gi|185177751|pdb|2ZL0|E Chain E, Crystal Structure Of H.Pylori Clpp
 gi|185177752|pdb|2ZL0|F Chain F, Crystal Structure Of H.Pylori Clpp
 gi|185177753|pdb|2ZL0|G Chain G, Crystal Structure Of H.Pylori Clpp
 gi|185177754|pdb|2ZL0|H Chain H, Crystal Structure Of H.Pylori Clpp
 gi|185177755|pdb|2ZL0|I Chain I, Crystal Structure Of H.Pylori Clpp
 gi|185177756|pdb|2ZL0|J Chain J, Crystal Structure Of H.Pylori Clpp
 gi|185177757|pdb|2ZL0|K Chain K, Crystal Structure Of H.Pylori Clpp
 gi|185177758|pdb|2ZL0|L Chain L, Crystal Structure Of H.Pylori Clpp
 gi|185177759|pdb|2ZL0|M Chain M, Crystal Structure Of H.Pylori Clpp
 gi|185177760|pdb|2ZL0|N Chain N, Crystal Structure Of H.Pylori Clpp
 gi|185177761|pdb|2ZL2|A Chain A, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 gi|185177762|pdb|2ZL2|B Chain B, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 gi|185177763|pdb|2ZL2|C Chain C, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 gi|185177764|pdb|2ZL2|D Chain D, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 gi|185177765|pdb|2ZL2|E Chain E, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 gi|185177766|pdb|2ZL2|F Chain F, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 gi|185177767|pdb|2ZL2|G Chain G, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 gi|185177768|pdb|2ZL2|H Chain H, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 gi|185177769|pdb|2ZL2|I Chain I, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 gi|185177770|pdb|2ZL2|J Chain J, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 gi|185177771|pdb|2ZL2|K Chain K, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 gi|185177772|pdb|2ZL2|L Chain L, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 gi|185177773|pdb|2ZL2|M Chain M, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 gi|185177774|pdb|2ZL2|N Chain N, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 gi|2313923|gb|AAD07842.1| ATP-dependent clp protease proteolytic component (clpP)
           [Helicobacter pylori 26695]
 gi|107836977|gb|ABF84846.1| ATP-dependent clp protease proteolytic component [Helicobacter
           pylori HPAG1]
          Length = 196

 Score =  251 bits (642), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 113/195 (57%), Positives = 155/195 (79%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
            +G +P V+E T+RGERSYDIYSRLLK+RIV ++G+I D +A+ I AQLLFLEAE+P+K+
Sbjct: 1   MMGYIPYVIENTDRGERSYDIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKD 60

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I LYINSPGGV+T+G++IYDTM FI+P +ST C+GQAASMG+ LLS G KG RF+LP++R
Sbjct: 61  IGLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSR 120

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQP GG  GQASDIE  + +I+++K  +N I  +N G++ E++ K  DRD  MSA E
Sbjct: 121 IMIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKE 180

Query: 195 ACDWGVVDKVLMSRI 209
           A ++G++DKVL   +
Sbjct: 181 AKEYGLIDKVLQKNV 195


>gi|266624421|ref|ZP_06117356.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           hathewayi DSM 13479]
 gi|288863728|gb|EFC96026.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           hathewayi DSM 13479]
          Length = 195

 Score =  251 bits (641), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 116/193 (60%), Positives = 154/193 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+E T++GERSYDIYSRLLKERI+F+  ++ D  A+++ AQLLFLEAE+P K+I
Sbjct: 1   MSLVPYVIESTSKGERSYDIYSRLLKERIIFLGEEVTDVSASIVVAQLLFLEAEDPNKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGG VTAGMAIYDTM +IK  +ST CMG AASMG+ LLS G KG RFALPNA I
Sbjct: 61  NLYINSPGGSVTAGMAIYDTMNYIKCDVSTVCMGMAASMGAFLLSGGAKGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I+  A++I+KIK+RLNEI   N G+ YE +E+  +RD+ M+A EA
Sbjct: 121 MIHQPSGGAQGQATEIKIVAENILKIKKRLNEILAANTGQPYEVIERDTERDNYMNAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D+++ S 
Sbjct: 181 KAYGLIDEIIYSH 193


>gi|150016209|ref|YP_001308463.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           beijerinckii NCIMB 8052]
 gi|149902674|gb|ABR33507.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           beijerinckii NCIMB 8052]
          Length = 199

 Score =  251 bits (641), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 116/193 (60%), Positives = 152/193 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT+RGERSYDI+SRLLKERI+ ++G++ D  A LI AQLLFLE+E+P K+I
Sbjct: 1   MALVPMVVEQTSRGERSYDIFSRLLKERIIMLSGEVNDDSANLIVAQLLFLESEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG +TAG AIYDTMQ+IK  +ST C+G AASMG+ LLS+G KG RFALPNA +
Sbjct: 61  YIYINSPGGSITAGNAIYDTMQYIKCDVSTICIGMAASMGAFLLSSGTKGKRFALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+D E HA+ I+K+K  LN I  +N GK  E ++  ++RD+ MSA EA
Sbjct: 121 MIHQPLGGFQGQATDFEIHAKRILKMKETLNRILSENTGKPLETIKADVERDNFMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD+V+ + 
Sbjct: 181 KAYGLVDEVITTH 193


>gi|261837975|gb|ACX97741.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           51]
          Length = 196

 Score =  251 bits (641), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 113/191 (59%), Positives = 154/191 (80%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
            +G +P V+E T+RGERSYDIYSRLLK+RIV ++G+I D +A+ I AQLLFLEAE+P+K+
Sbjct: 1   MMGYIPYVIENTDRGERSYDIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKD 60

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I LYINSPGGV+T+G++IYDTM FI+P +ST C+GQAASMG+ LLS G KG RF+LP++R
Sbjct: 61  IGLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSR 120

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQP GG  GQASDIE  + +I+++K  +N I  +N G++ E++ K  DRD  MSA E
Sbjct: 121 IMIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKE 180

Query: 195 ACDWGVVDKVL 205
           A ++G++DKVL
Sbjct: 181 AKEYGLIDKVL 191


>gi|188527362|ref|YP_001910049.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           Shi470]
 gi|217034159|ref|ZP_03439579.1| hypothetical protein HP9810_868g52 [Helicobacter pylori 98-10]
 gi|308182950|ref|YP_003927077.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           PeCan4]
 gi|226706455|sp|B2UT37|CLPP_HELPS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|188143602|gb|ACD48019.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           Shi470]
 gi|216943443|gb|EEC22899.1| hypothetical protein HP9810_868g52 [Helicobacter pylori 98-10]
 gi|261839391|gb|ACX99156.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           52]
 gi|297379992|gb|ADI34879.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Helicobacter
           pylori v225d]
 gi|308062114|gb|ADO04002.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           Cuz20]
 gi|308063422|gb|ADO05309.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           Sat464]
 gi|308065135|gb|ADO07027.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           PeCan4]
 gi|315586542|gb|ADU40923.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           35A]
 gi|317177376|dbj|BAJ55165.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           F16]
 gi|317180557|dbj|BAJ58343.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           F32]
 gi|317182104|dbj|BAJ59888.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           F57]
          Length = 195

 Score =  251 bits (641), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 113/190 (59%), Positives = 154/190 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +G +P V+E T+RGERSYDIYSRLLK+RIV ++G+I D +A+ I AQLLFLEAE+P+K+I
Sbjct: 1   MGYIPYVIENTDRGERSYDIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+T+G++IYDTM FI+P +ST C+GQAASMG+ LLS G KG RF+LP++RI
Sbjct: 61  GLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDIE  + +I+++K  +N I  +N G++ E++ K  DRD  MSA EA
Sbjct: 121 MIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEA 180

Query: 196 CDWGVVDKVL 205
            ++G++DKVL
Sbjct: 181 KEYGLIDKVL 190


>gi|254779232|ref|YP_003057337.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           B38]
 gi|254001143|emb|CAX29101.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           [Helicobacter pylori B38]
          Length = 196

 Score =  251 bits (641), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 113/191 (59%), Positives = 154/191 (80%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
            +G +P V+E T+RGERSYDIYSRLLK+RIV ++G+I D +A+ I AQLLFLEAE+P+K+
Sbjct: 1   MMGYIPYVIENTDRGERSYDIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKD 60

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I LYINSPGGV+T+G++IYDTM FI+P +ST C+GQAASMG+ LLS G KG RF+LP++R
Sbjct: 61  IGLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSR 120

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQP GG  GQASDIE  + +I+++K  +N I  +N G++ E++ K  DRD  MSA E
Sbjct: 121 IMIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKE 180

Query: 195 ACDWGVVDKVL 205
           A ++G++DKVL
Sbjct: 181 AKEYGLIDKVL 191


>gi|296157194|ref|ZP_06840030.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           sp. Ch1-1]
 gi|295892530|gb|EFG72312.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           sp. Ch1-1]
          Length = 215

 Score =  251 bits (640), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 113/193 (58%), Positives = 152/193 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LGLVP V+EQ+ RGER+YDIYSRLL+ERIVF+ G + +  A++I AQLLFLE+ENP K+I
Sbjct: 11  LGLVPTVIEQSGRGERAYDIYSRLLRERIVFLVGPVNEQSASVIVAQLLFLESENPDKDI 70

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S YINSPGG V  G+AIYDTMQFIKP +ST C G AASMG+ LL+AG++G R+ALPNARI
Sbjct: 71  SFYINSPGGSVYDGLAIYDTMQFIKPEVSTLCTGFAASMGTFLLTAGQRGKRYALPNARI 130

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  G A+D+E  A++++ ++ RLN +  +  G++ EE+ +  DRD+ MSA  A
Sbjct: 131 MIHQPSGGSQGTAADVEIQAKEVLYLRERLNAMMAERTGRSIEEIARDTDRDNFMSAHAA 190

Query: 196 CDWGVVDKVLMSR 208
             +G+VD+VL +R
Sbjct: 191 KTYGLVDEVLETR 203


>gi|160871940|ref|ZP_02062072.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rickettsiella
           grylli]
 gi|159120739|gb|EDP46077.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rickettsiella
           grylli]
          Length = 220

 Score =  251 bits (640), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 120/191 (62%), Positives = 153/191 (80%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQT RGER+YDIYSRLLK+RI+FV G IEDHMA LI AQ+LFLE+ENP K+ISL
Sbjct: 15  LVPMVVEQTGRGERAYDIYSRLLKDRIIFVVGPIEDHMANLIIAQMLFLESENPDKDISL 74

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G+AIYDTMQFIKP +ST C+GQAAS  +LLL  G KG R  LP+AR+++
Sbjct: 75  YINSPGGVVTSGLAIYDTMQFIKPDVSTMCIGQAASAAALLLCGGTKGKRHCLPHARMMI 134

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG+ GQA+DIE H ++++ ++ R+N I  K+ GK  E++ +  DRD+ M A +A D
Sbjct: 135 HQPLGGYQGQATDIEIHTREMLLVRERINSIMSKHTGKNTEQILRDTDRDNFMGAQQAID 194

Query: 198 WGVVDKVLMSR 208
           +G++D VL  R
Sbjct: 195 YGLIDAVLTMR 205


>gi|15611797|ref|NP_223448.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           J99]
 gi|308184578|ref|YP_003928711.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           SJM180]
 gi|6685330|sp|Q9ZL50|CLPP_HELPJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|4155294|gb|AAD06311.1| ATP-DEPENDENT PROTEASE, PROTEOLYTIC SUBUNIT [Helicobacter pylori
           J99]
 gi|308060498|gb|ADO02394.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           SJM180]
 gi|317014204|gb|ADU81640.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           Gambia94/24]
 gi|325996073|gb|ADZ51478.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           2018]
 gi|325997669|gb|ADZ49877.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           2017]
          Length = 195

 Score =  251 bits (640), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 113/194 (58%), Positives = 154/194 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +G +P V+E T RGERSYDIYSRLLK+RIV ++G+I D +A+ I AQLLFLEAE+P+K+I
Sbjct: 1   MGYIPYVIENTERGERSYDIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+T+G++IYDTM FI+P +ST C+GQAASMG+ LLS G KG RF+LP++RI
Sbjct: 61  GLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDIE  + +I+++K  +N I  +N G++ E++ K  DRD  MSA EA
Sbjct: 121 MIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEA 180

Query: 196 CDWGVVDKVLMSRI 209
            ++G++DKVL   +
Sbjct: 181 KEYGLIDKVLQKNV 194


>gi|126700924|ref|YP_001089821.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile 630]
 gi|254976904|ref|ZP_05273376.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile QCD-66c26]
 gi|255094290|ref|ZP_05323768.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile CIP 107932]
 gi|255308377|ref|ZP_05352548.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile ATCC 43255]
 gi|255316044|ref|ZP_05357627.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile QCD-76w55]
 gi|255518701|ref|ZP_05386377.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile QCD-97b34]
 gi|255651823|ref|ZP_05398725.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile QCD-37x79]
 gi|255657263|ref|ZP_05402672.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile QCD-23m63]
 gi|260684849|ref|YP_003216134.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile CD196]
 gi|260688507|ref|YP_003219641.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile R20291]
 gi|296451896|ref|ZP_06893613.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile NAP08]
 gi|296879709|ref|ZP_06903684.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile NAP07]
 gi|306521610|ref|ZP_07407957.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile QCD-32g58]
 gi|115252361|emb|CAJ70202.1| ATP-dependent Clp protease proteolytic subunit 1 [Clostridium
           difficile]
 gi|260211012|emb|CBA66324.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile CD196]
 gi|260214524|emb|CBE07039.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile R20291]
 gi|296259278|gb|EFH06156.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile NAP08]
 gi|296429298|gb|EFH15170.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile NAP07]
          Length = 194

 Score =  251 bits (640), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 117/193 (60%), Positives = 151/193 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQT RGERSYDI+SRLLK+RI+F+  Q+ D  A LI AQLLFLEAE+P K+I
Sbjct: 1   MALVPVVVEQTGRGERSYDIFSRLLKDRIIFLGDQVNDATAGLIVAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +T+GMAIYDTMQ+IKP +ST C+G AASMG+ LL+AG KG R ALPN+ I
Sbjct: 61  HLYINSPGGSITSGMAIYDTMQYIKPDVSTICIGMAASMGAFLLAAGAKGKRLALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DIE HA+ I+KIK  LNEI  +  G+  E+++   +RD+ MSA EA
Sbjct: 121 MIHQPLGGAQGQATDIEIHAKRILKIKETLNEILSERTGQPLEKIKMDTERDNFMSALEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++D+V   R
Sbjct: 181 KEYGLIDEVFTKR 193


>gi|229828304|ref|ZP_04454373.1| hypothetical protein GCWU000342_00362 [Shuttleworthia satelles DSM
           14600]
 gi|229792898|gb|EEP29012.1| hypothetical protein GCWU000342_00362 [Shuttleworthia satelles DSM
           14600]
          Length = 190

 Score =  251 bits (640), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 113/190 (59%), Positives = 149/190 (78%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+EQ +RGERSYDIYSRLLK+RI+F+   + +  A+LI AQLLFLE+E+P K+I LY
Sbjct: 1   MPYVIEQNSRGERSYDIYSRLLKDRIIFLGEDVNETTASLIVAQLLFLESEDPNKDIHLY 60

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGVVT GMAIYDTM +IKP +ST C+G AASMG+ LL+ G KG R+ALPNA I++H
Sbjct: 61  INSPGGVVTCGMAIYDTMNYIKPDVSTICIGMAASMGAFLLAGGAKGKRYALPNAEIMIH 120

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  GQA++IE  A+ I+K KR++N+I   N GKTYE+V    +RDH + A EA ++
Sbjct: 121 QPSGGAKGQATEIEIAAESILKTKRKMNQILADNTGKTYEQVAADTERDHYLDAKEALEY 180

Query: 199 GVVDKVLMSR 208
           G+VD+++  R
Sbjct: 181 GIVDQIIDHR 190


>gi|66515781|ref|XP_392540.2| PREDICTED: putative ATP-dependent Clp protease proteolytic subunit,
           mitochondrial-like [Apis mellifera]
          Length = 237

 Score =  251 bits (640), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 110/191 (57%), Positives = 157/191 (82%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
           +L  +P+VVEQ+ RGER+YDIYSRLLKERI+ + G I D++++++ AQLLFL++EN +  
Sbjct: 22  YLNFIPVVVEQSGRGERAYDIYSRLLKERIICLMGPITDNVSSVVIAQLLFLQSENSKNP 81

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I +YINSPGG VTAG+ IYDTMQ++ PP++T+C+GQA SM SLLL+AG KGMR +LPNAR
Sbjct: 82  IHMYINSPGGSVTAGLGIYDTMQYVLPPVATWCVGQACSMASLLLAAGTKGMRHSLPNAR 141

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I+ HQPSGG SGQA+DI+  A +I+K+K+++N +YVK+ G   E++E+ ++RD+ MS  E
Sbjct: 142 IMTHQPSGGVSGQATDIQIQALEILKLKKQINNLYVKHTGLDLEKIERCMERDNFMSPKE 201

Query: 195 ACDWGVVDKVL 205
           A ++G++DKVL
Sbjct: 202 AKEFGIIDKVL 212


>gi|297583414|ref|YP_003699194.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           selenitireducens MLS10]
 gi|297141871|gb|ADH98628.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           selenitireducens MLS10]
          Length = 197

 Score =  251 bits (640), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 112/190 (58%), Positives = 153/190 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQTNRGER+YDIYSRLLK+RI+ +   I+D++A  I AQLLFL A++P K+I
Sbjct: 1   MNLVPTVIEQTNRGERAYDIYSRLLKDRIIMLGTPIDDNVANSIVAQLLFLAADDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG +TAGMAIYDTMQFIKP + T C+G AASMG+ LL+AGE G R+ALPN+ +
Sbjct: 61  SLYINSPGGSITAGMAIYDTMQFIKPKVQTICIGMAASMGAFLLTAGEPGKRYALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDIE HA+ IV++K +LN+I  +  G+  E++ K  DRD+ +SA++A
Sbjct: 121 MIHQPLGGAQGQASDIEIHAKRIVEMKEKLNQILAERTGQDIEQIRKDTDRDNFLSAAQA 180

Query: 196 CDWGVVDKVL 205
            ++G++D+V+
Sbjct: 181 KEYGLIDEVM 190


>gi|145341425|ref|XP_001415810.1| mitochondrial Clp protease, subunit of ClpP peptidase complex
           [Ostreococcus lucimarinus CCE9901]
 gi|144576033|gb|ABO94102.1| mitochondrial Clp protease, subunit of ClpP peptidase complex
           [Ostreococcus lucimarinus CCE9901]
          Length = 232

 Score =  251 bits (640), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 112/192 (58%), Positives = 157/192 (81%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMV+EQTNRGER +DIYSRLLKERIVFV G I+D++++L  AQLLFLE+ +P + I 
Sbjct: 31  ALVPMVLEQTNRGERVFDIYSRLLKERIVFVNGPIDDNVSSLTVAQLLFLESVSPTQPIW 90

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VTAG+ IYDTMQ++ PPI T C+GQA+SMGSLLL+AGE G R +LP++R++
Sbjct: 91  MYINSPGGSVTAGLGIYDTMQYVSPPIHTLCVGQASSMGSLLLAAGEPGQRRSLPHSRVM 150

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           LHQPSGG SGQASDI  HAQ+I+ ++++L +IY+K+  + ++ +  TL+RD  M+  +A 
Sbjct: 151 LHQPSGGASGQASDIAIHAQEILNVRQKLVQIYMKHTKQNFDSIGVTLERDTFMTPEDAK 210

Query: 197 DWGVVDKVLMSR 208
           ++G++D+V+ +R
Sbjct: 211 EFGLIDEVIETR 222


>gi|91785004|ref|YP_560210.1| ATP-dependent Clp protease proteolytic subunit ClpP [Burkholderia
           xenovorans LB400]
 gi|116243097|sp|Q13UT1|CLPP1_BURXL RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|91688958|gb|ABE32158.1| ATP-dependent Clp protease proteolytic subunit ClpP [Burkholderia
           xenovorans LB400]
          Length = 215

 Score =  251 bits (640), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 113/193 (58%), Positives = 152/193 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LGLVP V+EQ+ RGER+YDIYSRLL+ERIVF+ G + +  A++I AQLLFLE+ENP K+I
Sbjct: 11  LGLVPTVIEQSGRGERAYDIYSRLLRERIVFLVGPVNEQSASVIVAQLLFLESENPDKDI 70

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S YINSPGG V  G+AIYDTMQFIKP +ST C G AASMG+ LL+AG++G R+ALPNARI
Sbjct: 71  SFYINSPGGSVYDGLAIYDTMQFIKPEVSTLCTGFAASMGTFLLTAGQRGKRYALPNARI 130

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  G A+D+E  A++++ ++ RLN +  +  G++ EE+ +  DRD+ MSA  A
Sbjct: 131 MIHQPSGGSQGTAADVEIQAKEVLYLRERLNAMMAERTGRSIEEIARDTDRDNFMSAHAA 190

Query: 196 CDWGVVDKVLMSR 208
             +G+VD+VL +R
Sbjct: 191 KTYGLVDEVLETR 203


>gi|319778293|ref|YP_004129206.1| ATP-dependent Clp protease proteolytic subunit [Taylorella
           equigenitalis MCE9]
 gi|317108317|gb|ADU91063.1| ATP-dependent Clp protease proteolytic subunit [Taylorella
           equigenitalis MCE9]
          Length = 227

 Score =  251 bits (640), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 113/199 (56%), Positives = 155/199 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG +P V+EQ+ RGER+YDIYSRLLKERI+F+ G++ +  A L+ AQLLFLE+ENP+K+I
Sbjct: 28  LGYIPHVIEQSGRGERAYDIYSRLLKERIIFMVGEVNEQTANLVVAQLLFLESENPEKDI 87

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG V AG+AIYDTMQF+ P +ST C G AASMG+LLL+AG +G R++LPN+RI
Sbjct: 88  SLYINSPGGGVYAGLAIYDTMQFVTPDVSTMCTGLAASMGALLLTAGAEGKRYSLPNSRI 147

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DIE  A++I+ ++ RLN I  K+C K  E + K  +RD+ MS  EA
Sbjct: 148 MIHQPLGGAKGQATDIEIQAREILDLRERLNRILSKHCDKDIEIIRKHTERDYYMSPEEA 207

Query: 196 CDWGVVDKVLMSRIDIEEK 214
            ++G++D V  +R D+ ++
Sbjct: 208 LEFGLIDTVFTNRSDLNKE 226


>gi|209964556|ref|YP_002297471.1| ATP-dependent Clp protease, proteolytic subunit ClpP, putative
           [Rhodospirillum centenum SW]
 gi|209958022|gb|ACI98658.1| ATP-dependent Clp protease, proteolytic subunit ClpP, putative
           [Rhodospirillum centenum SW]
          Length = 209

 Score =  251 bits (640), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 119/200 (59%), Positives = 162/200 (81%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQTNRGER+YDIYSRLLKERI+F+ G + D +A+L+CAQ LFLEAENP KEIS
Sbjct: 8   ALVPMVVEQTNRGERAYDIYSRLLKERIIFLVGGVNDAVASLVCAQFLFLEAENPNKEIS 67

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            YINSPGG VT+G+AIYDTMQ+I+ P++T C+GQAASMG+LLL+ G  G R++LPN+RI+
Sbjct: 68  FYINSPGGYVTSGLAIYDTMQYIRCPVATICVGQAASMGALLLAGGGAGRRYSLPNSRIM 127

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  GQA+DIE  AQ+I+++++RLNEI+ ++ G+  + +EK ++RD  MS  EA 
Sbjct: 128 IHQPSGGAQGQAADIEIQAQEILRMRQRLNEIFQRHTGQNLDVIEKAVERDKFMSPEEAK 187

Query: 197 DWGVVDKVLMSRIDIEEKSK 216
            +G++D+V  +R +    S+
Sbjct: 188 AFGLIDEVFSNRPNSAPNSQ 207


>gi|300856723|ref|YP_003781707.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           ljungdahlii DSM 13528]
 gi|300436838|gb|ADK16605.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           ljungdahlii DSM 13528]
          Length = 194

 Score =  250 bits (639), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 115/193 (59%), Positives = 154/193 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQT+RGERSYDIYSRLLK+RIV ++ ++ D  A+L+ AQLLFLEAE+P K+I
Sbjct: 1   MSLVPVVVEQTSRGERSYDIYSRLLKDRIVMLSEEVNDVSASLVVAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +T+GMAIYDTMQ+IK  +ST C+G  ASMG+ LL+AG KG RFALPNA I
Sbjct: 61  YLYINSPGGSITSGMAIYDTMQYIKSDVSTICIGMGASMGAFLLTAGAKGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DI  HA+ I+ IK++LN I  +  G+  E+VEK  +RD+ M+A EA
Sbjct: 121 MIHQPLGGFQGQATDIGIHAKRILDIKKKLNTIISERTGQPLEKVEKDTERDNFMTAEEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++D+V+  +
Sbjct: 181 KEYGLIDEVITKK 193


>gi|270261418|ref|ZP_06189691.1| ATP-dependent Clp protease proteolytic subunit 1 [Serratia
           odorifera 4Rx13]
 gi|270044902|gb|EFA17993.1| ATP-dependent Clp protease proteolytic subunit 1 [Serratia
           odorifera 4Rx13]
          Length = 197

 Score =  250 bits (639), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 114/191 (59%), Positives = 149/191 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP VVEQ+++GER++DIYSRLL++RI+F+ G++ D +A L+CAQLLFLEAENP+K I L
Sbjct: 7   LVPTVVEQSSQGERAFDIYSRLLRDRIIFLNGEVNDAIAELVCAQLLFLEAENPEKPIHL 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +T+G AIYDTM+FI   + T CMG A SMGS LL AGE G R ALPNA + +
Sbjct: 67  YINSPGGAITSGFAIYDTMRFINAQVHTLCMGTARSMGSFLLMAGEPGHRAALPNASLHV 126

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQASDI  HA+++ + K  +  +Y ++CG + EEVE+ LDRD  M+A EA +
Sbjct: 127 HQPLGGFQGQASDIFIHAEEMRRTKDLVIRLYAEHCGHSAEEVEQVLDRDRFMTADEAVE 186

Query: 198 WGVVDKVLMSR 208
           WG+VD+VL+ R
Sbjct: 187 WGLVDRVLVRR 197


>gi|124514481|gb|EAY55994.1| ATP-dependent Clp protease, proteolytic subunit [Leptospirillum
           rubarum]
          Length = 203

 Score =  250 bits (639), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 116/191 (60%), Positives = 153/191 (80%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P VVEQT RGERSYDIYSRLLK+RI+F+   I+D +A L+ AQLLFLEAE+  K+I+L
Sbjct: 2   LIPYVVEQTTRGERSYDIYSRLLKDRIIFLGTAIDDMVANLVIAQLLFLEAEDASKDINL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVTAG+AIYDTMQ+IKP +ST C+GQAASMG++LL+AG  G RFALPNARI++
Sbjct: 62  YINSPGGVVTAGLAIYDTMQYIKPDVSTICVGQAASMGAVLLAAGADGKRFALPNARIMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA++IE HA++I+K++  LN I  K+  ++  +V +  DRD+ +SA +A  
Sbjct: 122 HQPLGGVQGQATEIEIHAREILKMREHLNGILAKHTKQSLAKVSQDTDRDYFLSAEDAKA 181

Query: 198 WGVVDKVLMSR 208
           +G+VD V+ S 
Sbjct: 182 YGLVDSVISSH 192


>gi|15596998|ref|NP_250492.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa PAO1]
 gi|116049751|ref|YP_791442.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|218892245|ref|YP_002441112.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa LESB58]
 gi|254234895|ref|ZP_04928218.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa C3719]
 gi|254240194|ref|ZP_04933516.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa 2192]
 gi|296389808|ref|ZP_06879283.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa PAb1]
 gi|18203012|sp|Q9I2U1|CLPP1_PSEAE RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|9947784|gb|AAG05190.1|AE004606_4 ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa PAO1]
 gi|115584972|gb|ABJ10987.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|126166826|gb|EAZ52337.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa C3719]
 gi|126193572|gb|EAZ57635.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa 2192]
 gi|218772471|emb|CAW28253.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa LESB58]
          Length = 213

 Score =  250 bits (639), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 122/192 (63%), Positives = 155/192 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMVVEQ+ RGER+YDIYSRLLKERI+F+ GQ+ED+MA L+ AQLLFLEAENP+K+I 
Sbjct: 18  GLVPMVVEQSARGERAYDIYSRLLKERIIFLVGQVEDYMANLVVAQLLFLEAENPEKDIH 77

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+LLL+ G  G R+ LP++R++
Sbjct: 78  LYINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGALLLAGGAAGKRYCLPHSRMM 137

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+ IK RLN+I   + G+  + + +  DRD  MS  EA 
Sbjct: 138 IHQPLGGFQGQASDIEIHAKEILFIKERLNQILAHHTGQPLDVIARDTDRDRFMSGDEAV 197

Query: 197 DWGVVDKVLMSR 208
            +G++DKV+  R
Sbjct: 198 KYGLIDKVMTQR 209


>gi|154249786|ref|YP_001410611.1| ATP-dependent Clp protease proteolytic subunit [Fervidobacterium
           nodosum Rt17-B1]
 gi|154153722|gb|ABS60954.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Fervidobacterium nodosum Rt17-B1]
          Length = 206

 Score =  250 bits (639), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 113/187 (60%), Positives = 151/187 (80%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP+V+E T R ER+YDIYSRLLK+RI+F+   I+DH+A L+ AQLLFLEAENP K+I LY
Sbjct: 15  VPIVIESTGRYERAYDIYSRLLKDRIIFLGSAIDDHVANLVVAQLLFLEAENPDKDIQLY 74

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG+VTAG+AIYDTMQ++K  ++T C+GQAASMG++LL+AG KG RFALPN+RI++H
Sbjct: 75  INSPGGLVTAGLAIYDTMQYVKCDVATICVGQAASMGAVLLAAGAKGKRFALPNSRIMIH 134

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  G A D+E   +++++IKR +NEI  K+ G+  E +EK  DRD  MSA EA ++
Sbjct: 135 QPLGGAEGSAKDVEILTKELLRIKRIINEILSKHTGQDIERIEKDTDRDFFMSAQEAMEY 194

Query: 199 GVVDKVL 205
           G++DKV+
Sbjct: 195 GIIDKVI 201


>gi|206896158|ref|YP_002247153.1| Clp protease [Coprothermobacter proteolyticus DSM 5265]
 gi|206738775|gb|ACI17853.1| Clp protease [Coprothermobacter proteolyticus DSM 5265]
          Length = 199

 Score =  250 bits (639), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 112/196 (57%), Positives = 155/196 (79%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P V+EQT RGER YDIYSRLL++RIVF+ G+IE  MA ++ AQLLFLEAE+P+++I +
Sbjct: 4   LIPYVIEQTPRGERGYDIYSRLLRDRIVFINGEIEPEMAGVVIAQLLFLEAEDPKRDIYV 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG+VT G+AIYDTMQ+I+P + T C+GQAASM ++LL+AG KG RFALPN+RILL
Sbjct: 64  YINSPGGIVTDGLAIYDTMQYIEPDVVTMCIGQAASMAAILLAAGTKGKRFALPNSRILL 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQ +D+E  A+++V+IK+R+NEI   + G+  + + +  DRD I++  EA  
Sbjct: 124 HQPMGGVQGQVTDVEIQAKELVRIKQRINEILSVHTGQPIDRILQDTDRDFILTPDEAVQ 183

Query: 198 WGVVDKVLMSRIDIEE 213
           +GV+D+V+  RI  E+
Sbjct: 184 YGVIDQVITKRIRKED 199


>gi|53802553|ref|YP_112777.1| ATP-dependent Clp protease proteolytic subunit [Methylococcus
           capsulatus str. Bath]
 gi|67460462|sp|Q60C68|CLPP1_METCA RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|53756314|gb|AAU90605.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylococcus
           capsulatus str. Bath]
          Length = 206

 Score =  250 bits (639), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 117/192 (60%), Positives = 161/192 (83%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVP+V+EQ+ RGER++DIYSRLLKER++F+ GQ+ED+MA L+ AQLLFLE+ENP K+I 
Sbjct: 10  GLVPVVIEQSARGERAFDIYSRLLKERVIFLVGQVEDYMANLVIAQLLFLESENPDKDIH 69

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG+VTAG+AIYDTMQFIKP +ST C+GQAASMG+LLL+ G  G R+ LP++RI+
Sbjct: 70  LYINSPGGLVTAGLAIYDTMQFIKPDVSTLCVGQAASMGALLLAGGAAGKRYCLPHSRIM 129

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDI+ HA++I+ ++ RLN+I   + G+  E+++   DRD+ M  ++A 
Sbjct: 130 IHQPLGGFQGQASDIDIHAREILAVRDRLNKILAHHTGQPIEKIQIDTDRDNFMGGNDAV 189

Query: 197 DWGVVDKVLMSR 208
           ++G++DKVL+SR
Sbjct: 190 EYGLIDKVLVSR 201


>gi|206602656|gb|EDZ39137.1| Peptidase S14, ClpP [Leptospirillum sp. Group II '5-way CG']
          Length = 203

 Score =  250 bits (639), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 116/191 (60%), Positives = 153/191 (80%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P VVEQT RGERSYDIYSRLLK+RI+F+   I+D +A L+ AQLLFLEAE+  K+I+L
Sbjct: 2   LIPYVVEQTTRGERSYDIYSRLLKDRIIFLGTAIDDMVANLVIAQLLFLEAEDASKDINL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVTAG+AIYDTMQ+IKP +ST C+GQAASMG++LL+AG  G RFALPNARI++
Sbjct: 62  YINSPGGVVTAGLAIYDTMQYIKPDVSTICVGQAASMGAVLLAAGADGKRFALPNARIMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA++IE HA++I+K++  LN I  K+  ++  +V +  DRD+ +SA +A  
Sbjct: 122 HQPLGGVQGQATEIEIHAREILKMREHLNGILAKHTKQSLAKVAQDTDRDYFLSAEDAKA 181

Query: 198 WGVVDKVLMSR 208
           +G+VD V+ S 
Sbjct: 182 YGLVDSVISSH 192


>gi|185177785|pdb|2ZL3|A Chain A, Crystal Structure Of H.Pylori Clpp S99a
 gi|185177786|pdb|2ZL3|B Chain B, Crystal Structure Of H.Pylori Clpp S99a
 gi|185177787|pdb|2ZL3|C Chain C, Crystal Structure Of H.Pylori Clpp S99a
 gi|185177788|pdb|2ZL3|D Chain D, Crystal Structure Of H.Pylori Clpp S99a
 gi|185177789|pdb|2ZL3|E Chain E, Crystal Structure Of H.Pylori Clpp S99a
 gi|185177790|pdb|2ZL3|F Chain F, Crystal Structure Of H.Pylori Clpp S99a
 gi|185177791|pdb|2ZL3|G Chain G, Crystal Structure Of H.Pylori Clpp S99a
 gi|185177792|pdb|2ZL3|H Chain H, Crystal Structure Of H.Pylori Clpp S99a
 gi|185177793|pdb|2ZL3|I Chain I, Crystal Structure Of H.Pylori Clpp S99a
 gi|185177794|pdb|2ZL3|J Chain J, Crystal Structure Of H.Pylori Clpp S99a
 gi|185177795|pdb|2ZL3|K Chain K, Crystal Structure Of H.Pylori Clpp S99a
 gi|185177796|pdb|2ZL3|L Chain L, Crystal Structure Of H.Pylori Clpp S99a
 gi|185177797|pdb|2ZL3|M Chain M, Crystal Structure Of H.Pylori Clpp S99a
 gi|185177798|pdb|2ZL3|N Chain N, Crystal Structure Of H.Pylori Clpp S99a
 gi|185177799|pdb|2ZL4|A Chain A, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 gi|185177801|pdb|2ZL4|B Chain B, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 gi|185177803|pdb|2ZL4|C Chain C, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 gi|185177805|pdb|2ZL4|D Chain D, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 gi|185177807|pdb|2ZL4|E Chain E, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 gi|185177809|pdb|2ZL4|F Chain F, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 gi|185177811|pdb|2ZL4|G Chain G, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 gi|185177813|pdb|2ZL4|H Chain H, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 gi|185177815|pdb|2ZL4|I Chain I, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 gi|185177817|pdb|2ZL4|J Chain J, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 gi|185177819|pdb|2ZL4|K Chain K, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 gi|185177821|pdb|2ZL4|L Chain L, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 gi|185177823|pdb|2ZL4|M Chain M, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 gi|185177825|pdb|2ZL4|N Chain N, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
          Length = 196

 Score =  250 bits (639), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 112/195 (57%), Positives = 155/195 (79%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
            +G +P V+E T+RGERSYDIYSRLLK+RIV ++G+I D +A+ I AQLLFLEAE+P+K+
Sbjct: 1   MMGYIPYVIENTDRGERSYDIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKD 60

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I LYINSPGGV+T+G++IYDTM FI+P +ST C+GQAA+MG+ LLS G KG RF+LP++R
Sbjct: 61  IGLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAAAMGAFLLSCGAKGKRFSLPHSR 120

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQP GG  GQASDIE  + +I+++K  +N I  +N G++ E++ K  DRD  MSA E
Sbjct: 121 IMIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKE 180

Query: 195 ACDWGVVDKVLMSRI 209
           A ++G++DKVL   +
Sbjct: 181 AKEYGLIDKVLQKNV 195


>gi|304440714|ref|ZP_07400598.1| ATP-dependent Clp protease proteolytic subunit [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304370901|gb|EFM24523.1| ATP-dependent Clp protease proteolytic subunit [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 194

 Score =  250 bits (639), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 111/193 (57%), Positives = 153/193 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+E TNRGER+YDIYSRLLKERI+F++G+I +  A L+ AQLLFLE+E+P K+I
Sbjct: 1   MALVPTVIEMTNRGERAYDIYSRLLKERIIFISGEINNVTADLVVAQLLFLESEDPNKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG V+AG AI+DTM +IKP +ST C+G AASMG+ LL+AG+KG RFALPN+ I
Sbjct: 61  QIYINSPGGSVSAGFAIFDTMNYIKPDVSTICIGMAASMGAFLLAAGKKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDI  HA+ I++I++R+N+I  +  G+  E++E   DRD+ +SA EA
Sbjct: 121 MIHQPLGGAQGQASDIMIHAEKIIEIRQRINKILAEETGQPLEKIEHDTDRDYFLSADEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++D V+  R
Sbjct: 181 KEYGLIDNVIRER 193


>gi|307722032|ref|YP_003893172.1| ATP-dependent Clp protease proteolytic subunit ClpP [Sulfurimonas
           autotrophica DSM 16294]
 gi|306980125|gb|ADN10160.1| ATP-dependent Clp protease proteolytic subunit ClpP [Sulfurimonas
           autotrophica DSM 16294]
          Length = 196

 Score =  250 bits (639), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 112/191 (58%), Positives = 154/191 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P VVE+T RGERSYDIYSRLLK+RIV ++G++ D +A+ I AQ LFLEAE+P+K+I
Sbjct: 1   MSYIPYVVEKTGRGERSYDIYSRLLKDRIVMLSGEVNDAVASTIVAQFLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGGVVTAG+AI+DTM +I+P ++T C+GQAASMG+ LLS GEKG R+ALP+ARI
Sbjct: 61  YFYINSPGGVVTAGLAIFDTMNYIRPHVATICIGQAASMGAFLLSCGEKGKRYALPHARI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI   A++I+++K+ LN I  KN G+  + +E   DRD+ MSA+EA
Sbjct: 121 MIHQPLGGAQGQATDIAIQAEEILRMKKELNGILAKNTGQNIKTIEADTDRDNFMSAAEA 180

Query: 196 CDWGVVDKVLM 206
            D+G++D+VL+
Sbjct: 181 KDYGMIDEVLV 191


>gi|104781013|ref|YP_607511.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           entomophila L48]
 gi|122403881|sp|Q1ICA8|CLPP_PSEE4 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|95110000|emb|CAK14705.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           entomophila L48]
          Length = 213

 Score =  250 bits (639), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 119/192 (61%), Positives = 155/192 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+EQ+ RGER+YDIYSRLLKER++F+ G +ED+MA L+ AQLLFLEAENP K+I 
Sbjct: 18  GLVPMVIEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLVVAQLLFLEAENPDKDIH 77

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+ LL+AG  G R  LPN+R++
Sbjct: 78  LYINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAAGAAGKRHCLPNSRVM 137

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQA+DIE HAQ+I+ IK RLNE+   + G++ E +++  +RD+ MSA+ A 
Sbjct: 138 IHQPLGGFQGQATDIEIHAQEILNIKARLNELLAHHTGQSLETIKRDTERDNFMSAARAA 197

Query: 197 DWGVVDKVLMSR 208
           ++G++D V   R
Sbjct: 198 EYGLIDSVYDKR 209


>gi|312898487|ref|ZP_07757877.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Megasphaera
           micronuciformis F0359]
 gi|310620406|gb|EFQ03976.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Megasphaera
           micronuciformis F0359]
          Length = 202

 Score =  250 bits (639), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 113/188 (60%), Positives = 156/188 (82%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP+VVEQ+++GERSYDIYSRLLK+RI+F+TG I+D +A  + AQLLFLEA+NP K+I LY
Sbjct: 6   VPIVVEQSSQGERSYDIYSRLLKDRIIFLTGAIDDTVANSVIAQLLFLEADNPDKDIHLY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGVVTAGMAIYDTM++IKP +ST C+G AASM S+LL+AG KG RFALP++++++H
Sbjct: 66  INSPGGVVTAGMAIYDTMRYIKPDVSTICVGSAASMASVLLTAGTKGKRFALPHSQVMIH 125

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQASDIE HA++I+++++ LN I   + G+  + +EK  +RD+ M+A EA  +
Sbjct: 126 QPLGGVQGQASDIEIHAREILRMRKELNGILATHTGQPVDVIEKDTERDNFMTAEEAKAY 185

Query: 199 GVVDKVLM 206
           G+VD++L+
Sbjct: 186 GLVDEILI 193


>gi|89055299|ref|YP_510750.1| ATP-dependent Clp protease proteolytic subunit ClpP [Jannaschia sp.
           CCS1]
 gi|116243142|sp|Q28NI7|CLPP_JANSC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|88864848|gb|ABD55725.1| ATP-dependent Clp protease proteolytic subunit ClpP [Jannaschia sp.
           CCS1]
          Length = 208

 Score =  250 bits (638), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 120/191 (62%), Positives = 146/191 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQT+RGER+YDI+SRLLKERIVFV G +   M+ LI AQLL LEAENP KEIS+
Sbjct: 12  LVPMVVEQTSRGERAYDIFSRLLKERIVFVNGPVHSGMSHLIVAQLLHLEAENPSKEISM 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM+IYDTMQ+IKP +ST   G AASMGS++   GEKGMR ALPNA  L+
Sbjct: 72  YINSPGGEVTAGMSIYDTMQYIKPKVSTLVCGMAASMGSVIAVGGEKGMRLALPNAEFLV 131

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  G ASDI   A+ I   + RL ++YVK+ G+ YE V++ LDRD  M+   A +
Sbjct: 132 HQPSGGARGTASDILISARSIEATRERLYQLYVKHTGQDYETVQRALDRDTWMTPEVALE 191

Query: 198 WGVVDKVLMSR 208
           WG VD+++ +R
Sbjct: 192 WGHVDEIVTTR 202


>gi|52082006|ref|YP_080797.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           licheniformis ATCC 14580]
 gi|52787393|ref|YP_093222.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           licheniformis ATCC 14580]
 gi|319647870|ref|ZP_08002088.1| ATP-dependent Clp protease proteolytic subunit 1 [Bacillus sp.
           BT1B_CT2]
 gi|67460468|sp|Q65EI5|CLPP1_BACLD RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|52005217|gb|AAU25159.1| ATP-dependent Clp protease proteolytic subunit (class III
           heat-shock protein) [Bacillus licheniformis ATCC 14580]
 gi|52349895|gb|AAU42529.1| ClpP [Bacillus licheniformis ATCC 14580]
 gi|317390211|gb|EFV71020.1| ATP-dependent Clp protease proteolytic subunit 1 [Bacillus sp.
           BT1B_CT2]
          Length = 198

 Score =  250 bits (638), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 112/198 (56%), Positives = 156/198 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFLEAE+P+K+I
Sbjct: 1   MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGG +TAGMAIYDTMQFIKP +ST C G AASMG+ LL+AGEKG R+ALPN+ +
Sbjct: 61  SIYINSPGGSITAGMAIYDTMQFIKPQVSTICTGMAASMGAFLLAAGEKGKRYALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN+I  +  G+  E +E+  DRD+  +A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILSLRDKLNKILAERTGQPLEVIERDTDRDNFKTAEEA 180

Query: 196 CDWGVVDKVLMSRIDIEE 213
            ++G++DKVL   ID ++
Sbjct: 181 KEYGLIDKVLTRNIDAQK 198


>gi|255565556|ref|XP_002523768.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis]
 gi|223536980|gb|EEF38617.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis]
          Length = 296

 Score =  250 bits (638), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 111/192 (57%), Positives = 153/192 (79%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+E ++RGER+YDI+SRLLKERIV + G I D  A ++ AQLLFLE+ENP K I 
Sbjct: 86  GLVPMVIEHSSRGERAYDIFSRLLKERIVCINGPINDDTAHVVVAQLLFLESENPSKPIH 145

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+NSPGG VTAG+AIYDTMQ+I+ PI+T C+GQAASM SLLL+AG KG R +LPNA I+
Sbjct: 146 MYLNSPGGQVTAGLAIYDTMQYIRSPINTICLGQAASMASLLLAAGAKGERKSLPNATIM 205

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG+SGQA D+  H + IV++   LN++Y K+ G++ + ++K +DRD+ M+  EA 
Sbjct: 206 IHQPSGGYSGQAKDMTIHTKQIVRVWDSLNQLYSKHTGQSVDVIQKNMDRDYFMTPEEAK 265

Query: 197 DWGVVDKVLMSR 208
           ++G++D+V+  R
Sbjct: 266 EFGIIDEVIDQR 277


>gi|152986423|ref|YP_001348854.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa PA7]
 gi|150961581|gb|ABR83606.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
           aeruginosa PA7]
          Length = 213

 Score =  250 bits (638), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 121/192 (63%), Positives = 155/192 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMVVEQ+ RGER+YDIYSRLLKERI+F+ GQ+ED+MA L+ AQLLFLEAENP+K+I 
Sbjct: 18  GLVPMVVEQSARGERAYDIYSRLLKERIIFLVGQVEDYMANLVVAQLLFLEAENPEKDIH 77

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+LLL+ G  G R+ LP++R++
Sbjct: 78  LYINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGALLLAGGAAGKRYCLPHSRMM 137

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+ IK RLN++   + G+  + + +  DRD  MS  EA 
Sbjct: 138 IHQPLGGFQGQASDIEIHAKEILFIKERLNQVLAHHTGQPLDVIARDTDRDRFMSGDEAV 197

Query: 197 DWGVVDKVLMSR 208
            +G++DKV+  R
Sbjct: 198 KYGLIDKVMTQR 209


>gi|225378750|ref|ZP_03755971.1| hypothetical protein ROSEINA2194_04420 [Roseburia inulinivorans DSM
           16841]
 gi|225209409|gb|EEG91763.1| hypothetical protein ROSEINA2194_04420 [Roseburia inulinivorans DSM
           16841]
          Length = 202

 Score =  250 bits (638), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 113/193 (58%), Positives = 153/193 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGER+YDIYSRLLK+RI+F+  ++ +  A+L+ AQLLFLE+E+P K+I
Sbjct: 10  MSLVPYVIEQTSRGERNYDIYSRLLKDRIIFLGEEVNETTASLVVAQLLFLESEDPGKDI 69

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG+VTAG+AIYDTMQ+IK  +ST C+G AASMG+ LL+ G KG R ALPNA I
Sbjct: 70  HLYINSPGGMVTAGLAIYDTMQYIKCDVSTICIGMAASMGAFLLAGGAKGKRLALPNAEI 129

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I+  A++I+K K++LNEI   N GK Y+ +    +RDH MSA EA
Sbjct: 130 MIHQPSGGAKGQATEIQIAAENILKTKKKLNEILAANTGKPYDVIAADTERDHYMSAQEA 189

Query: 196 CDWGVVDKVLMSR 208
            ++G++D V+ SR
Sbjct: 190 MEYGLIDNVITSR 202


>gi|323527161|ref|YP_004229314.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           sp. CCGE1001]
 gi|323384163|gb|ADX56254.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           sp. CCGE1001]
          Length = 227

 Score =  250 bits (638), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 114/193 (59%), Positives = 151/193 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LGLVP V+EQ+ RGER+YDIYSRLL+ERIVF+ G + +  A+LI AQLLFLE+ENP K+I
Sbjct: 11  LGLVPTVIEQSGRGERAYDIYSRLLRERIVFLVGPVNEQSASLIVAQLLFLESENPDKDI 70

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S YINSPGG V  G+AIYDTMQFIKP +ST C G AASMG+ LL AG++G R+ALPNARI
Sbjct: 71  SFYINSPGGSVYDGLAIYDTMQFIKPEVSTLCTGFAASMGTFLLCAGQRGKRYALPNARI 130

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  G A+DI+  A++++ ++ RLN +  +  G++ EE+ +  DRD+ MSA  A
Sbjct: 131 MIHQPSGGSQGTAADIDIQAKEVLYLRERLNAMMAERTGRSVEEIARDTDRDNFMSALAA 190

Query: 196 CDWGVVDKVLMSR 208
             +G+VD+VL +R
Sbjct: 191 KTYGLVDEVLETR 203


>gi|290969192|ref|ZP_06560717.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290780698|gb|EFD93301.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 200

 Score =  250 bits (638), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 110/188 (58%), Positives = 156/188 (82%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP+VVEQT++GERSYD+YSRL+K+RI+F++GQ+ED MA  + AQLLFLEAE+P K+I LY
Sbjct: 5   VPVVVEQTSQGERSYDLYSRLMKDRIIFLSGQVEDTMANSLIAQLLFLEAEDPDKDIYLY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGVVTAGMAIYDTMQ+IKP +ST C+G AASM S+LL+AG KG RFALP++++++H
Sbjct: 65  INSPGGVVTAGMAIYDTMQYIKPDVSTICVGSAASMASVLLAAGTKGKRFALPHSQVMIH 124

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA+DIE H ++I++++R LN I   + G+  + +EK  +RD+ ++A +A  +
Sbjct: 125 QPLGGVQGQATDIEIHTREILRVRRELNGILAAHTGQPLDVIEKDTERDNFLTAEDAKHY 184

Query: 199 GVVDKVLM 206
           G++D++L+
Sbjct: 185 GLIDEILV 192


>gi|121534156|ref|ZP_01665981.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermosinus
           carboxydivorans Nor1]
 gi|121307259|gb|EAX48176.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermosinus
           carboxydivorans Nor1]
          Length = 203

 Score =  249 bits (637), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 110/191 (57%), Positives = 155/191 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP+VVEQ+NRGER+YDIYSRLLK+RIVF+ G I+DH+A L+ AQLLFLE+E+P K+I
Sbjct: 1   MTFVPIVVEQSNRGERAYDIYSRLLKDRIVFIGGPIDDHVANLVIAQLLFLESEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVTAG+AIYDTMQ+IKP +ST C+G AASM ++LL+AG  G R+ALP AR+
Sbjct: 61  HLYINSPGGVVTAGLAIYDTMQYIKPDVSTICLGSAASMAAVLLAAGAPGKRYALPYARV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+  A++I++++  LN+I  ++ GK  E ++   +RD+ MS+ EA
Sbjct: 121 MIHQPLGGAQGQATDIQIQAREILRLREILNDILARHTGKPLERIQHDTERDYFMSSEEA 180

Query: 196 CDWGVVDKVLM 206
            ++G++D V++
Sbjct: 181 KEYGIIDAVVV 191


>gi|284044102|ref|YP_003394442.1| ATP-dependent Clp protease proteolytic subunit ClpP [Conexibacter
           woesei DSM 14684]
 gi|283948323|gb|ADB51067.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Conexibacter
           woesei DSM 14684]
          Length = 194

 Score =  249 bits (637), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 115/188 (61%), Positives = 151/188 (80%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQT+RGER++DIYSRLL ERI+F+   ++D +A LI AQLL LE+E+P K+IS+
Sbjct: 4   LVPMVVEQTSRGERAFDIYSRLLNERIIFLGTPVDDQIANLIVAQLLHLESEDPDKDISI 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+AIYDTMQFIKP + T C+G A SMG+LLLS G +G R ALPNA+IL+
Sbjct: 64  YINSPGGSVYAGLAIYDTMQFIKPDVQTICVGIAMSMGALLLSGGARGKRMALPNAKILI 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQ S  F GQA+DIE HA++I+ I+RRL+EI   + GK  +EV+K  +RD+ MS+ EA D
Sbjct: 124 HQVSSSFQGQATDIEIHAREIIDIRRRLDEIIALHSGKPVDEVKKDTERDYFMSSEEAKD 183

Query: 198 WGVVDKVL 205
           +G++D+V+
Sbjct: 184 YGIIDRVI 191


>gi|146282418|ref|YP_001172571.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           stutzeri A1501]
 gi|145570623|gb|ABP79729.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           stutzeri A1501]
          Length = 206

 Score =  249 bits (637), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 119/192 (61%), Positives = 156/192 (81%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+EQ+ RGER+YDIYSRLLKER++F+ GQ+ED+MA LI AQLLFLEAENP+K+I 
Sbjct: 11  GLVPMVIEQSARGERAYDIYSRLLKERVIFMVGQVEDYMANLIVAQLLFLEAENPEKDIH 70

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+LLL+ G  G R+ LP++R++
Sbjct: 71  LYINSPGGSVTAGMSIYDTMQFIKPNVSTICIGQACSMGALLLAGGAAGKRYCLPHSRMM 130

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+ I+ RLN++   + G+  + + +  DRD+ MS  EA 
Sbjct: 131 IHQPLGGFQGQASDIEIHAREILTIRERLNKVLAHHTGQPMDVIARDTDRDNFMSGEEAV 190

Query: 197 DWGVVDKVLMSR 208
            +G++D+VL  R
Sbjct: 191 KYGLIDQVLTQR 202


>gi|206901598|ref|YP_002250810.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dictyoglomus
           thermophilum H-6-12]
 gi|206740701|gb|ACI19759.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dictyoglomus
           thermophilum H-6-12]
          Length = 194

 Score =  249 bits (637), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 115/191 (60%), Positives = 155/191 (81%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+V+EQT RGER+YDIYSRLLK RIVF+   I D +A L+ AQLLFLE+E+P+K+I L
Sbjct: 2   LVPIVIEQTPRGERAYDIYSRLLKSRIVFLGTAINDEVANLVVAQLLFLESEDPEKDIYL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG+AIYDTM+ IKP ++T C+GQAASM ++LL+AG+KG R+ALP++R+++
Sbjct: 62  YINSPGGEVSAGLAIYDTMRHIKPKVATVCVGQAASMAAILLAAGDKGKRYALPHSRVMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  G A+DIE H ++I+KIKR LNEI   + G+  E++E+  DRD  MSA EA +
Sbjct: 122 HQPLGGAYGPAADIEIHTREILKIKRVLNEILAHHTGQPIEKIERDTDRDFFMSAYEAKE 181

Query: 198 WGVVDKVLMSR 208
           +G+VD+VL S+
Sbjct: 182 YGIVDEVLESK 192


>gi|149923964|ref|ZP_01912350.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Plesiocystis
           pacifica SIR-1]
 gi|149815196|gb|EDM74745.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Plesiocystis
           pacifica SIR-1]
          Length = 217

 Score =  249 bits (637), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 113/187 (60%), Positives = 153/187 (81%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVEQT+RGERS+DIYSRLLK+RIVF+   I D +A++I AQLLFLE+E+P K+I LY
Sbjct: 13  IPFVVEQTHRGERSWDIYSRLLKDRIVFLGDPINDRVASIIIAQLLFLESEDPDKDIRLY 72

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGVVTAG+ IYDTMQ+++  ++T+C+GQAASMG+ LL+ G KG RFALPNARI++H
Sbjct: 73  INSPGGVVTAGLGIYDTMQYVRCDVATYCLGQAASMGAFLLAGGAKGKRFALPNARIMIH 132

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG SGQA+DIE  A++I+++K +LNEI  ++ G+T +E+    DRD+ M A EA  +
Sbjct: 133 QPHGGASGQATDIEIQAREILRLKAKLNEIMARHSGRTVDEILADTDRDNFMGADEAKKY 192

Query: 199 GVVDKVL 205
           G++D+VL
Sbjct: 193 GLIDEVL 199


>gi|152989915|ref|YP_001355637.1| ATP-dependent Clp protease proteolytic subunit [Nitratiruptor sp.
           SB155-2]
 gi|166201830|sp|A6Q1C1|CLPP_NITSB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|151421776|dbj|BAF69280.1| ATP-dependent Clp protease, proteolytic subunit [Nitratiruptor sp.
           SB155-2]
          Length = 196

 Score =  249 bits (637), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 111/187 (59%), Positives = 155/187 (82%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+E+T RGERSYDIYSRLLK+RI+ ++G+I D +A+ I AQLLFLEAE+P K+I LY
Sbjct: 5   IPYVIERTGRGERSYDIYSRLLKDRIIMLSGEINDAVASSIVAQLLFLEAEDPDKDIYLY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGV+T+GM+IYDTM +IKP +ST C+GQAASMG+ LLS+G KG R+ALP+ARI++H
Sbjct: 65  INSPGGVITSGMSIYDTMNYIKPDVSTICIGQAASMGAFLLSSGTKGKRYALPHARIMIH 124

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA+DIE  A++I+++K+ LNEI  +N G++ +++ K  +RD  MS+ EA ++
Sbjct: 125 QPLGGAQGQATDIEIQAKEILRLKKILNEILAENTGQSVKKIAKDTERDFFMSSEEAKEY 184

Query: 199 GVVDKVL 205
           G++D+VL
Sbjct: 185 GLIDQVL 191


>gi|269792564|ref|YP_003317468.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100199|gb|ACZ19186.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 199

 Score =  249 bits (637), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 114/191 (59%), Positives = 152/191 (79%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P V+EQT RGERSYDIYSRLLK+RI+F+  +I+DH++ L+ AQLLFLE+E+P K++ +
Sbjct: 9   LIPYVIEQTGRGERSYDIYSRLLKDRIIFIGQEIDDHLSNLVVAQLLFLESEDPDKDVFV 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVTAG+AIYDTMQ++K P+ST C+GQAASM ++LLSAGEKG R  LP++RI++
Sbjct: 69  YINSPGGVVTAGLAIYDTMQYVKCPVSTICVGQAASMAAVLLSAGEKGKRICLPHSRIMI 128

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I+++K  LN I   + G+  + + K  DRD  MSA EA  
Sbjct: 129 HQPLGGAQGQASDIEIQAKEILRMKEILNSILSNHTGQPMDRIAKDTDRDFFMSAEEAMA 188

Query: 198 WGVVDKVLMSR 208
           +G+VDKV+  R
Sbjct: 189 YGIVDKVIDRR 199


>gi|331001370|ref|ZP_08324994.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Parasutterella excrementihominis YIT 11859]
 gi|329568629|gb|EGG50431.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Parasutterella excrementihominis YIT 11859]
          Length = 209

 Score =  249 bits (636), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 109/192 (56%), Positives = 154/192 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            L+PMV+EQ+ RGERS+DIYSRLL++R+VF+ G + D  A L+ AQLLFLE+ENP K+IS
Sbjct: 10  ALIPMVIEQSGRGERSFDIYSRLLRDRVVFLVGPVTDQSANLVVAQLLFLESENPDKDIS 69

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYI+SPGG V AG++IYDTMQFIKP +ST C+G AASMG+ LL+AG KG RFALPN+RI+
Sbjct: 70  LYIDSPGGSVYAGLSIYDTMQFIKPDVSTICLGMAASMGAFLLAAGAKGKRFALPNSRIM 129

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG +G A+DIE  A++I++++ RLN I  ++ G++ E++    +RD+ MS+++A 
Sbjct: 130 IHQPSGGTNGTAADIEIQAKEILELRSRLNTILSEHTGQSIEKIAVDTERDNFMSSAQAV 189

Query: 197 DWGVVDKVLMSR 208
           ++G++D V   R
Sbjct: 190 EYGIIDGVFRKR 201


>gi|320106219|ref|YP_004181809.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Terriglobus
           saanensis SP1PR4]
 gi|319924740|gb|ADV81815.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Terriglobus
           saanensis SP1PR4]
          Length = 198

 Score =  249 bits (636), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 111/193 (57%), Positives = 160/193 (82%), Gaps = 3/193 (1%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +GLVPMV+EQT+RGER+YDIYSRLL++ I+F+   I+D++A +I AQLLFL  E+P+K+I
Sbjct: 1   MGLVPMVIEQTSRGERAYDIYSRLLRDNIIFLGTPIDDNIANVIIAQLLFLSGEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +TAGMAIYDTMQ+IK  +ST C+GQAASMG+ LL AG+KG RFALPN+RI
Sbjct: 61  QLYINSPGGSITAGMAIYDTMQYIKNDVSTLCIGQAASMGAFLLMAGKKGKRFALPNSRI 120

Query: 136 LLHQP---SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           L+HQP    GG SGQA++I+ HA++I++I+  +N+I  ++ G+T E++E+  DRD IM++
Sbjct: 121 LIHQPLIMGGGISGQATEIDIHAREILRIRELMNKIQAEHTGQTLEQIERDTDRDFIMNS 180

Query: 193 SEACDWGVVDKVL 205
           ++A ++G++D ++
Sbjct: 181 AQAKEYGLIDDII 193


>gi|260887080|ref|ZP_05898343.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Selenomonas
           sputigena ATCC 35185]
 gi|330839143|ref|YP_004413723.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Selenomonas
           sputigena ATCC 35185]
 gi|260863142|gb|EEX77642.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Selenomonas
           sputigena ATCC 35185]
 gi|329746907|gb|AEC00264.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Selenomonas
           sputigena ATCC 35185]
          Length = 206

 Score =  249 bits (636), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 114/195 (58%), Positives = 160/195 (82%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VPMVVE++NRGER+YDIYSRLLK+RIVFV G I+D++A ++ AQLLFLE+E+P K+I LY
Sbjct: 9   VPMVVERSNRGERAYDIYSRLLKDRIVFVGGPIDDNVANVVVAQLLFLESEDPDKDIHLY 68

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGVVTAG+AIYDTMQ+I+P +ST C+GQAASMGSLLL+AG KG R+ALP ARI++H
Sbjct: 69  INSPGGVVTAGLAIYDTMQYIRPDVSTICIGQAASMGSLLLTAGAKGKRYALPLARIMIH 128

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQ++DI+  A++I++++   N+I  K+ G+  E++    +RD+ M+A EA ++
Sbjct: 129 QPLGGAQGQSTDIQIQAKEILRLREVGNDILAKHTGQPREKLIADTERDNFMTAEEAKEY 188

Query: 199 GVVDKVLMSRIDIEE 213
           G++D+V+   + IE+
Sbjct: 189 GLIDEVITRPVKIEK 203


>gi|303257392|ref|ZP_07343405.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Burkholderiales bacterium 1_1_47]
 gi|302859749|gb|EFL82827.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Burkholderiales bacterium 1_1_47]
          Length = 209

 Score =  249 bits (636), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 109/192 (56%), Positives = 154/192 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            L+PMV+EQ+ RGERS+DIYSRLL++R+VF+ G + D  A L+ AQLLFLE+ENP K+IS
Sbjct: 10  ALIPMVIEQSGRGERSFDIYSRLLRDRVVFLVGPVTDQSANLVVAQLLFLESENPDKDIS 69

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYI+SPGG V AG++IYDTMQFIKP +ST C+G AASMG+ LL+AG KG RFALPN+RI+
Sbjct: 70  LYIDSPGGSVYAGLSIYDTMQFIKPDVSTICLGMAASMGAFLLAAGAKGKRFALPNSRIM 129

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG +G A+DIE  A++I++++ RLN I  ++ G++ E++    +RD+ MS+++A 
Sbjct: 130 IHQPSGGTNGTAADIEIQAKEILELRSRLNTILSEHTGQSIEKIAVDTERDNFMSSAQAV 189

Query: 197 DWGVVDKVLMSR 208
           ++G++D V   R
Sbjct: 190 EYGIIDGVFRKR 201


>gi|224438107|ref|ZP_03659042.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter
           cinaedi CCUG 18818]
 gi|313144547|ref|ZP_07806740.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter
           cinaedi CCUG 18818]
 gi|313129578|gb|EFR47195.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter
           cinaedi CCUG 18818]
          Length = 196

 Score =  249 bits (636), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 110/189 (58%), Positives = 151/189 (79%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G +P V+E+T RGERSYDIYSRLLK+RI+ ++G+I DH+A+ I AQLLFLEAE+P K+I+
Sbjct: 3   GYIPFVIERTGRGERSYDIYSRLLKDRIILLSGEINDHIASSIVAQLLFLEAEDPDKDIN 62

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            YINSPGGV+T+  +IYDTM +I+  IST C+GQAAS G+ LLS+G KG RF+LPN+RI+
Sbjct: 63  FYINSPGGVITSAFSIYDTMNYIRSDISTICIGQAASAGAFLLSSGTKGKRFSLPNSRIM 122

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA+DIE  A++I+++K+ LNEI  +N G++ E + +  +RD  MS  EA 
Sbjct: 123 IHQPLGGAQGQATDIEIQAKEILRLKKILNEIMAENTGQSVENITQDTERDFFMSGEEAK 182

Query: 197 DWGVVDKVL 205
           D+G+VDK+L
Sbjct: 183 DYGLVDKIL 191


>gi|152991609|ref|YP_001357330.1| ATP-dependent Clp protease proteolytic subunit [Sulfurovum sp.
           NBC37-1]
 gi|166214717|sp|A6Q675|CLPP_SULNB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|151423470|dbj|BAF70973.1| ATP-dependent Clp protease, proteolytic subunit [Sulfurovum sp.
           NBC37-1]
          Length = 195

 Score =  249 bits (636), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 110/190 (57%), Positives = 153/190 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P VVEQT RGERSYDIYSRLLK+RI+ ++G++ D +A+ I AQLLFLEA++P K+I
Sbjct: 1   MSYIPYVVEQTGRGERSYDIYSRLLKDRIIMLSGEVNDQVASSIVAQLLFLEAQDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGGV+T+G++++DTM +IKP I T C+GQAASMG+ LL++G KG R+ALP+ARI
Sbjct: 61  YFYINSPGGVITSGLSMFDTMNYIKPDIVTICIGQAASMGAFLLASGTKGKRYALPHARI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQ++DI+  AQ+I ++K  LNEI  +  GKT + +EK  +RD+ MSA EA
Sbjct: 121 MIHQPSGGAQGQSTDIQIQAQEIQRLKDTLNEIMAEKTGKTAKRIEKDTERDNFMSAKEA 180

Query: 196 CDWGVVDKVL 205
            ++G++DKVL
Sbjct: 181 VEYGLIDKVL 190


>gi|18203597|sp|Q9X5N0|CLPP2_MYXXA RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|4838463|gb|AAD31002.1|AF127082_1 ATP-dependent protease proteolytic subunit ClpP [Myxococcus
           xanthus]
          Length = 206

 Score =  249 bits (636), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 115/190 (60%), Positives = 156/190 (82%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP V+EQT+RGERSYDI SRLLK+RIV +  +I+D +A +I AQLLFLE+E+P K+I+LY
Sbjct: 6   VPYVIEQTHRGERSYDIISRLLKDRIVMLGTEIDDDVANVIVAQLLFLESEDPDKDINLY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDTMQ++K P+ST C+GQAASMG++LL AG KG R+ALP++RI++H
Sbjct: 66  INSPGGSVTAGLAIYDTMQYVKCPVSTICVGQAASMGAVLLLAGAKGKRYALPSSRIMIH 125

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA+DIE  A++I+++K +LNE+ VK+ G++ E VEK  DRD+ M ASEA  +
Sbjct: 126 QPLGGVRGQATDIEIQAKEILRMKAKLNELIVKHTGQSIERVEKDTDRDYFMGASEAKAY 185

Query: 199 GVVDKVLMSR 208
           G++D++   R
Sbjct: 186 GIIDEIQNPR 195


>gi|91083021|ref|XP_974664.1| PREDICTED: similar to ClpP caseinolytic peptidase, ATP-dependent,
           proteolytic subunit homolog (E. coli) [Tribolium
           castaneum]
 gi|270007650|gb|EFA04098.1| hypothetical protein TcasGA2_TC014333 [Tribolium castaneum]
          Length = 258

 Score =  249 bits (636), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 110/192 (57%), Positives = 159/192 (82%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
            G +P+VVEQ+ RG+R+YDIYSRLL+ERI+ + G I D+ +++I AQLLFL+AE+  K I
Sbjct: 36  FGHIPIVVEQSGRGDRAYDIYSRLLRERIICLMGPITDYTSSVIIAQLLFLQAESASKPI 95

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGV+T+G+ IYDTMQ+I PP++T+C+GQA SM SL+L+AG KGMR +LPN+RI
Sbjct: 96  HMYINSPGGVITSGLGIYDTMQYILPPVATWCVGQACSMASLILAAGAKGMRHSLPNSRI 155

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG SGQA+DI+  A++I+K+K+++N +YVK+     E VE++++RD+ MS SEA
Sbjct: 156 MIHQPSGGASGQATDIKIQAEEILKMKKQINCLYVKHTETALERVEQSVERDNFMSPSEA 215

Query: 196 CDWGVVDKVLMS 207
            ++G++DKVL S
Sbjct: 216 LEFGIIDKVLTS 227


>gi|160933529|ref|ZP_02080917.1| hypothetical protein CLOLEP_02375 [Clostridium leptum DSM 753]
 gi|156867406|gb|EDO60778.1| hypothetical protein CLOLEP_02375 [Clostridium leptum DSM 753]
          Length = 201

 Score =  249 bits (635), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 116/193 (60%), Positives = 150/193 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP VVEQT+RGERSYDI+SRLL +RIV +T ++ D  A+L+ AQLL+LE ++P K+I
Sbjct: 9   MSLVPYVVEQTSRGERSYDIFSRLLNDRIVMLTEEVNDTSASLVVAQLLYLEGQDPTKDI 68

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG VTAGM+IYDTMQ+IK  +ST CMG AASMG+ LL+AG KG R ALPN+ I
Sbjct: 69  SLYINSPGGSVTAGMSIYDTMQYIKCDVSTICMGMAASMGAFLLAAGAKGKRMALPNSDI 128

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+DI  HA  I + K++LNEI  +  G+  E +E+  +RD+ MSA EA
Sbjct: 129 MIHQPSGGAQGQATDILIHANHIARTKKKLNEILAERTGQPLEVIERDTERDNFMSAQEA 188

Query: 196 CDWGVVDKVLMSR 208
            D+G+VDKV+  R
Sbjct: 189 ADYGLVDKVIYKR 201


>gi|302386739|ref|YP_003822561.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           saccharolyticum WM1]
 gi|302197367|gb|ADL04938.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           saccharolyticum WM1]
          Length = 195

 Score =  249 bits (635), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 115/192 (59%), Positives = 152/192 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+E T++GERSYDIYSRLLKERI+F+  ++ D  A+L+ AQLLFLEAE+P K+I
Sbjct: 1   MSLVPYVIESTSKGERSYDIYSRLLKERIIFLGEEVSDVSASLVVAQLLFLEAEDPNKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGG VTAGMAIYDTM +IK  +ST CMG AASMG+ LL+ G KG RFALPNA +
Sbjct: 61  NLYINSPGGSVTAGMAIYDTMNYIKCDVSTVCMGMAASMGAFLLAGGAKGKRFALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I   A++I+KIK+RLNEI   N G+ YE +E+  +RD+ M+A EA
Sbjct: 121 MIHQPSGGAKGQATEIRIVAENILKIKKRLNEILSANTGQPYEVIERDTERDNYMNAEEA 180

Query: 196 CDWGVVDKVLMS 207
             +G++D ++ S
Sbjct: 181 KAYGLIDDIIYS 192


>gi|217967475|ref|YP_002352981.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dictyoglomus
           turgidum DSM 6724]
 gi|217336574|gb|ACK42367.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dictyoglomus
           turgidum DSM 6724]
          Length = 194

 Score =  249 bits (635), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 116/191 (60%), Positives = 155/191 (81%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+V+EQT RGER+YDIYSRLLK RIVF+   I D +A LI AQLLFLE+E+P+K+I L
Sbjct: 2   LVPIVIEQTPRGERAYDIYSRLLKSRIVFLGTTINDEVANLIVAQLLFLESEDPEKDIYL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG+AIYDT++ IKP ++T C+GQAASM ++LL+AG+KG R+ALP++R+++
Sbjct: 62  YINSPGGEVSAGLAIYDTIRHIKPKVATVCVGQAASMAAILLAAGDKGKRYALPHSRVMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  G A+DIE H ++I+KIKR LNEI   + G+  E++EK  DRD  MSA EA +
Sbjct: 122 HQPLGGAYGPAADIEIHTREILKIKRVLNEILAYHTGQPIEKIEKDTDRDFFMSAYEAKE 181

Query: 198 WGVVDKVLMSR 208
           +G+VD+VL S+
Sbjct: 182 YGIVDEVLESK 192


>gi|94264491|ref|ZP_01288278.1| Endopeptidase Clp [delta proteobacterium MLMS-1]
 gi|94266601|ref|ZP_01290283.1| Endopeptidase Clp [delta proteobacterium MLMS-1]
 gi|93452772|gb|EAT03310.1| Endopeptidase Clp [delta proteobacterium MLMS-1]
 gi|93455050|gb|EAT05277.1| Endopeptidase Clp [delta proteobacterium MLMS-1]
          Length = 200

 Score =  249 bits (635), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 110/198 (55%), Positives = 158/198 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT RGERSYDIYSRLLKERI+F+   + D +A ++ AQ+LFLEA++P K+I
Sbjct: 1   MSLIPFVIEQTPRGERSYDIYSRLLKERIIFLGTGVNDEVANVVIAQMLFLEADDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           + YINSPGG VTAG+AIYDTM+++K  I+T C+GQAASMG++LL+AG KG R+ALPNARI
Sbjct: 61  TFYINSPGGSVTAGLAIYDTMRYVKCDIATLCLGQAASMGAVLLAAGTKGKRYALPNARI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQP GGF GQASDI+ HA++I+++++ LN++   + G+  ++++   +RD+ MS+ EA
Sbjct: 121 LIHQPMGGFQGQASDIDIHAREILRMRQGLNKMLADHTGQKLKKIQTDTERDYFMSSEEA 180

Query: 196 CDWGVVDKVLMSRIDIEE 213
             +G++DKVL+ R    E
Sbjct: 181 KTYGLIDKVLLERTTASE 198


>gi|15616126|ref|NP_244431.1| ATP-dependent Clp protease proteolytic subunit [Bacillus halodurans
           C-125]
 gi|11386690|sp|Q9K709|CLPP1_BACHD RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|10176188|dbj|BAB07283.1| ATP-dependent Clp protease proteolytic subunit [Bacillus halodurans
           C-125]
          Length = 194

 Score =  248 bits (634), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 111/190 (58%), Positives = 151/190 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RI+ +   I+D++A  I AQLLFL+AE+P K+I
Sbjct: 1   MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGTAIDDNVANSIVAQLLFLQAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG +TAGMAIYDTMQ+IKP +ST C+G AASMG+ LL+AG KG RFALPN+ +
Sbjct: 61  SLYINSPGGSITAGMAIYDTMQYIKPNVSTICIGMAASMGAFLLAAGAKGKRFALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDIE H + I++++  LN I  +  G+  E++ K  DRD+ M+A +A
Sbjct: 121 MIHQPLGGTRGQASDIEIHTRRILEMRETLNRILAERTGQPLEQIAKDTDRDNFMTAEKA 180

Query: 196 CDWGVVDKVL 205
            ++G++DKV+
Sbjct: 181 REYGLIDKVI 190


>gi|307204646|gb|EFN83268.1| Putative ATP-dependent Clp protease proteolytic subunit,
           mitochondrial [Harpegnathos saltator]
          Length = 237

 Score =  248 bits (634), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 109/191 (57%), Positives = 158/191 (82%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
           +L  VP+VVEQ+ RGER+YDIYSRLLKERI+ + G I D++++++ AQLLFL++E+ +  
Sbjct: 24  YLNFVPVVVEQSGRGERAYDIYSRLLKERIICLMGPITDNVSSVVIAQLLFLQSESSKNP 83

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I +YINSPGG VTAG+ IYDTMQ++ PP++T+C+GQA SM SLLL+AG KGMR +LPNAR
Sbjct: 84  IHMYINSPGGSVTAGLGIYDTMQYVLPPVATWCVGQACSMASLLLAAGAKGMRHSLPNAR 143

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I+ HQPSGG  GQA+DI+  A +I+K+K+++NE+YVK+ G+  E++E +++RD+ MS  +
Sbjct: 144 IMTHQPSGGVQGQATDIQIQALEILKLKKQINELYVKHTGQELEKIESSMERDNFMSPIQ 203

Query: 195 ACDWGVVDKVL 205
           A ++G++DKVL
Sbjct: 204 AKEFGLIDKVL 214


>gi|260438109|ref|ZP_05791925.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Butyrivibrio
           crossotus DSM 2876]
 gi|292809590|gb|EFF68795.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Butyrivibrio
           crossotus DSM 2876]
          Length = 194

 Score =  248 bits (634), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 115/193 (59%), Positives = 150/193 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLLK+RI+F+  ++ D  A ++ AQLLFLEAE+P K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLKDRIIFLGEEVTDVSANIVVAQLLFLEAEDPGKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMAIYDTM +IK  +ST C+G AASMG+ LLS G KG RFALPNA I
Sbjct: 61  QLYINSPGGSVTAGMAIYDTMNYIKSDVSTICIGMAASMGAFLLSGGTKGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  G ASD++  A  I+K K++LNEI  KN GK  + +E+  DRD+ M+A EA
Sbjct: 121 MIHQPSGGSRGMASDMKIVADQILKTKQKLNEILAKNTGKPIDVIERDTDRDNYMTAQEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++D ++ +R
Sbjct: 181 LEYGLIDSIIENR 193


>gi|299143348|ref|ZP_07036428.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Peptoniphilus
           sp. oral taxon 386 str. F0131]
 gi|298517833|gb|EFI41572.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Peptoniphilus
           sp. oral taxon 386 str. F0131]
          Length = 194

 Score =  248 bits (634), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 116/193 (60%), Positives = 153/193 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQTN GERSYDIYSRLLKERI+F++G+I D  A L+ AQLLFLEAE+  K+I
Sbjct: 1   MALVPMVVEQTNHGERSYDIYSRLLKERIIFLSGEINDVTADLVVAQLLFLEAEDQNKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG V+AG AIYDT+++IK  +ST  +G AASMG+ LL+AG KG RFALPNA I
Sbjct: 61  QIYINSPGGSVSAGFAIYDTIKYIKCDVSTMVIGLAASMGAFLLAAGTKGKRFALPNADI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDI+ HA+ I++I+ R+N+I  +  G+  E+VE+  DRD+ +SA EA
Sbjct: 121 MIHQPLGGAQGQASDIKIHAEKILEIRERINKILSEETGQPLEKVERDTDRDYYLSAKEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++DKV+  R
Sbjct: 181 VEYGLIDKVIEKR 193


>gi|308798991|ref|XP_003074276.1| COG0515: Serine/threonine protein kinase (ISS) [Ostreococcus tauri]
 gi|116000447|emb|CAL50127.1| COG0515: Serine/threonine protein kinase (ISS) [Ostreococcus tauri]
          Length = 742

 Score =  248 bits (634), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 113/192 (58%), Positives = 152/192 (79%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMV+EQTNRGER +DIYSRLLKERIVF+ G I+D  ++L  AQLLFLE+ +P   I 
Sbjct: 544 ALVPMVLEQTNRGERVFDIYSRLLKERIVFINGPIDDTASSLAVAQLLFLESASPTAPIW 603

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+NSPGG VTAG+ IYDTMQ++ PPI T C+GQA+SM SLLL+AG KG R +LPN+R++
Sbjct: 604 MYVNSPGGSVTAGLGIYDTMQYVSPPIHTLCVGQASSMASLLLAAGAKGERRSLPNSRVM 663

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           LHQPSGG SGQASDI  HAQ+I+ ++ +L  IY+K+  + Y+++  TL+RD  MS S+A 
Sbjct: 664 LHQPSGGASGQASDIAIHAQEILNVREKLIHIYMKHTNQEYDKIGMTLERDTFMSPSDAL 723

Query: 197 DWGVVDKVLMSR 208
           ++G++D+V+  R
Sbjct: 724 EFGLIDEVIEHR 735


>gi|170049615|ref|XP_001857723.1| ATP-dependent Clp protease proteolytic subunit [Culex
           quinquefasciatus]
 gi|167871378|gb|EDS34761.1| ATP-dependent Clp protease proteolytic subunit [Culex
           quinquefasciatus]
          Length = 225

 Score =  248 bits (634), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 114/195 (58%), Positives = 152/195 (77%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
           S    L LVP+VVEQT RGER+YDI+SRLLKERI+ + G I D +++LI AQLLFL++EN
Sbjct: 20  SASRLLNLVPIVVEQTGRGERAYDIFSRLLKERIICLMGPIHDDLSSLIVAQLLFLQSEN 79

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
             K I +YINSPGG VTAG+AIYDTMQ++KPP++T+C+GQA SMGSLLL+AG  GMR +L
Sbjct: 80  GTKPIHMYINSPGGSVTAGLAIYDTMQYVKPPVATWCVGQACSMGSLLLAAGAPGMRHSL 139

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           PNARI++HQPSGG  GQA+DI+  A++I+K+K++L EIY K+    YE +   ++RD  +
Sbjct: 140 PNARIMIHQPSGGAQGQATDIQIQAEEILKLKKQLTEIYAKHTKSPYETLLAKMERDTFL 199

Query: 191 SASEACDWGVVDKVL 205
           +  EA   G++D VL
Sbjct: 200 NPEEAQTLGIIDTVL 214


>gi|297182365|gb|ADI18531.1| protease subunit of ATP-dependent clp proteases [uncultured SAR406
           cluster bacterium HF4000_22B16]
          Length = 202

 Score =  248 bits (633), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 114/191 (59%), Positives = 151/191 (79%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+PMVVEQT R ER+YDIYSRLLKERIVF+   I+D +++LI AQ LFLEAE+P K+I L
Sbjct: 11  LIPMVVEQTGRTERAYDIYSRLLKERIVFLGTPIDDSISSLIIAQFLFLEAEDPDKDIYL 70

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TAGMAI+DTM +IKP ++T CMGQA+SMG+ LL+ G+KG R ALPN+RI++
Sbjct: 71  YINSPGGYITAGMAIFDTMNYIKPDVATICMGQASSMGAFLLAGGKKGKRSALPNSRIMI 130

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI+  A +I++++ +LN++  K  G+   +VEK  DR++ MSA EA  
Sbjct: 131 HQPMGGAEGQASDIKIQADEIIRLRGKLNKLLAKQTGQKISKVEKDSDRNYFMSAVEAKK 190

Query: 198 WGVVDKVLMSR 208
           +G++D VL SR
Sbjct: 191 YGIIDTVLESR 201


>gi|115634688|ref|XP_786892.2| PREDICTED: similar to LOC496087 protein [Strongylocentrotus
           purpuratus]
          Length = 239

 Score =  248 bits (633), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 110/199 (55%), Positives = 161/199 (80%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+V+EQT RGER+YDIYSRLLKERI+ + G + D +++++ AQLLFL++E+ +K I +
Sbjct: 33  LVPIVIEQTGRGERAYDIYSRLLKERIICLMGPVNDTVSSVVIAQLLFLQSESNKKPIHM 92

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+ IYD+MQ++ PPI+T+C+GQA SMGSLLL+AG  GMR +LPN+RI++
Sbjct: 93  YINSPGGSVTAGLGIYDSMQYVLPPIATWCVGQACSMGSLLLTAGAPGMRHSLPNSRIMV 152

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSG   GQA+DI+  A++I+K+K+++N++YVK+ G+T + +E+ ++RDH MS  EA  
Sbjct: 153 HQPSGQAVGQATDIQIQAEEIIKLKKQINKLYVKHTGQTLDVIEQAMERDHFMSPQEALQ 212

Query: 198 WGVVDKVLMSRIDIEEKSK 216
           +G++DKVL     I E ++
Sbjct: 213 FGLIDKVLDHPPHIGENNQ 231


>gi|88608072|ref|YP_506627.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neorickettsia
           sennetsu str. Miyayama]
 gi|88600241|gb|ABD45709.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neorickettsia
           sennetsu str. Miyayama]
          Length = 211

 Score =  248 bits (633), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 118/193 (61%), Positives = 160/193 (82%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVV+QT RGER+YDI+SRLLKER+VF+TG IED MA+LI AQLLFLEAENP K+I
Sbjct: 11  MNLVPMVVDQTPRGERAYDIFSRLLKERVVFLTGPIEDGMASLIVAQLLFLEAENPDKDI 70

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG++IYDTMQ+IKP +ST C+GQAAS  SL+L++G +G RFALP++R+
Sbjct: 71  FMYINSPGGVVTAGLSIYDTMQYIKPSVSTVCVGQAASAASLILASGAEGKRFALPHSRV 130

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+D+E H ++I+++KR +NEIY K+ G+T +++E  L+RD  +S  EA
Sbjct: 131 MVHQPSGGVRGQATDMEIHVKEILQLKRMINEIYQKHTGETIKKIETLLERDTFLSPEEA 190

Query: 196 CDWGVVDKVLMSR 208
              G++D ++  R
Sbjct: 191 KKVGIIDDIITQR 203


>gi|206890175|ref|YP_002248104.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|226706554|sp|B5YI38|CLPP_THEYD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|206742113|gb|ACI21170.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 195

 Score =  248 bits (633), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 108/192 (56%), Positives = 157/192 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + +VP+V+EQT R ER YDIYSRLLK+RI+F+  +I DH+A ++ AQLLFL+ E+P+K+I
Sbjct: 1   MSIVPIVIEQTGRTERVYDIYSRLLKDRIIFIGTEINDHVANVVIAQLLFLQTEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG+V++G+AIYDTMQ++KP I+T+C+GQA+SM  +LL+AG KG RFALP++R+
Sbjct: 61  HIYINSPGGMVSSGLAIYDTMQYVKPDIATYCIGQASSMACVLLAAGTKGKRFALPHSRV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+D+E HA++I+K+K  LN I  K+ G+  E+++K  +RD  MSA EA
Sbjct: 121 MIHQPIGGFYGQATDVEIHAKEILKMKDLLNNILAKHTGQPIEKIQKDTERDFFMSAEEA 180

Query: 196 CDWGVVDKVLMS 207
             +G+VD+V+ S
Sbjct: 181 KLYGIVDEVISS 192


>gi|212640342|ref|YP_002316862.1| ATP-dependent Clp protease proteolytic subunit [Anoxybacillus
           flavithermus WK1]
 gi|226706440|sp|B7GL34|CLPP_ANOFW RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|212561822|gb|ACJ34877.1| ATP-dependent Clp protease proteolytic subunit (class III
           heat-shock protein) [Anoxybacillus flavithermus WK1]
          Length = 196

 Score =  248 bits (633), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 113/195 (57%), Positives = 156/195 (80%), Gaps = 1/195 (0%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT+RGER+YDIYSRLLK+RI+ +   I+DH+A  I +QLLFL AE+P+K+I
Sbjct: 1   MNLIPTVIEQTSRGERAYDIYSRLLKDRIIILGSPIDDHVANSIVSQLLFLAAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG +TAGMAIYDTMQFIKP +ST C+G AASMG+ LL+AG KG RFALPN+ I
Sbjct: 61  SLYINSPGGSITAGMAIYDTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN I  +N G+  E +E+  DRD+ M+A +A
Sbjct: 121 MIHQPLGGVQGQATEIEIAAKRILFLRDKLNRILSENTGQPIEVIERDTDRDNFMTAEKA 180

Query: 196 CDWGVVDKVLMSRID 210
            ++G++D+VL +R+D
Sbjct: 181 KEYGLIDRVL-TRVD 194


>gi|167766384|ref|ZP_02438437.1| hypothetical protein CLOSS21_00888 [Clostridium sp. SS2/1]
 gi|317496812|ref|ZP_07955142.1| Clp protease [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167711975|gb|EDS22554.1| hypothetical protein CLOSS21_00888 [Clostridium sp. SS2/1]
 gi|291559217|emb|CBL38017.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [butyrate-producing bacterium SSC/2]
 gi|316895824|gb|EFV17976.1| Clp protease [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 193

 Score =  248 bits (633), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 114/193 (59%), Positives = 153/193 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLLKERI+F+  ++ D  A L+ +QLLFLE+E+P K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLKERIIFLGEEVNDVTAGLVVSQLLFLESEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGG VTAGMAIYDTMQ++K  +ST CMG AASMG+ LLS G KG R ALPNA I
Sbjct: 61  NLYINSPGGSVTAGMAIYDTMQYVKCDVSTMCMGMAASMGAFLLSGGTKGKRLALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++IE  A+ I++ K++LN I  +N G+ YE + K  +RD+ ++A EA
Sbjct: 121 MIHQPSGGAQGQATEIEIAAEHILRTKKKLNTILSENTGQPYETIVKDTERDNWLTAQEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++DKV+ +R
Sbjct: 181 LEYGLIDKVMENR 193


>gi|222824462|ref|YP_002576036.1| ATP-dependent ClpAP/ClpXP protease, proteolytic subunit ClpP
           [Campylobacter lari RM2100]
 gi|254763785|sp|B9KDZ6|CLPP_CAMLR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|222539683|gb|ACM64784.1| ATP-dependent ClpAP/ClpXP protease, proteolytic subunit ClpP
           [Campylobacter lari RM2100]
          Length = 196

 Score =  248 bits (633), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 115/187 (61%), Positives = 149/187 (79%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVE+T+RGERSYDIYSRLLK+RI+ ++G+I D +A  I AQLLFLEAE+PQK+I LY
Sbjct: 5   IPYVVEKTSRGERSYDIYSRLLKDRIIMLSGEINDDLAASIVAQLLFLEAEDPQKDIYLY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGVVT+G +IYDTM +IK  +ST C+GQAASMG+ LLS G  G RFALPN+RI++H
Sbjct: 65  INSPGGVVTSGFSIYDTMNYIKADVSTICIGQAASMGAFLLSCGAPGKRFALPNSRIMIH 124

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA+DIE  A++I+++K  LN+I  KN  +   ++EK  DRD  MSA EA ++
Sbjct: 125 QPLGGARGQATDIEIQAKEILRLKAILNDILAKNTKQKLSKIEKDTDRDFFMSAIEAKEY 184

Query: 199 GVVDKVL 205
           G++DKVL
Sbjct: 185 GLIDKVL 191


>gi|49078976|gb|AAT49840.1| PA1801 [synthetic construct]
          Length = 214

 Score =  248 bits (633), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 121/192 (63%), Positives = 154/192 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMVVEQ+ RGER+YDIYSRLLKERI+F+ GQ+ED+MA L+ AQ LFLEAENP+K+I 
Sbjct: 18  GLVPMVVEQSARGERAYDIYSRLLKERIIFLVGQVEDYMANLVVAQWLFLEAENPEKDIH 77

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+LLL+ G  G R+ LP++R++
Sbjct: 78  LYINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGALLLAGGAAGKRYCLPHSRMM 137

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+ IK RLN+I   + G+  + + +  DRD  MS  EA 
Sbjct: 138 IHQPLGGFQGQASDIEIHAKEILFIKERLNQILAHHTGQPLDVIARDTDRDRFMSGDEAV 197

Query: 197 DWGVVDKVLMSR 208
            +G++DKV+  R
Sbjct: 198 KYGLIDKVMTQR 209


>gi|167746334|ref|ZP_02418461.1| hypothetical protein ANACAC_01043 [Anaerostipes caccae DSM 14662]
 gi|317470744|ref|ZP_07930129.1| Clp protease [Anaerostipes sp. 3_2_56FAA]
 gi|167654327|gb|EDR98456.1| hypothetical protein ANACAC_01043 [Anaerostipes caccae DSM 14662]
 gi|316901879|gb|EFV23808.1| Clp protease [Anaerostipes sp. 3_2_56FAA]
          Length = 196

 Score =  248 bits (633), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 117/190 (61%), Positives = 149/190 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLLKERI+F+  ++ D  A+LI +QLLFLEAE+P+K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLKERIIFLGEEVTDVSASLIVSQLLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG VTAGMAIYDTM FIK  +ST CMG AASMGS LLS G KG R ALPNA I
Sbjct: 61  SLYINSPGGSVTAGMAIYDTMNFIKCDVSTICMGMAASMGSFLLSGGAKGKRMALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++I+  A+ I++ K+RLN I  +N GK  E +E+  DRD+ ++A EA
Sbjct: 121 MIHQPMGGAQGQATEIQIAAEHILQTKKRLNRILSENTGKPLEVIERDTDRDNWLTAEEA 180

Query: 196 CDWGVVDKVL 205
            ++G++D V 
Sbjct: 181 VEYGLIDAVF 190


>gi|154687585|ref|YP_001422746.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           amyloliquefaciens FZB42]
 gi|308175199|ref|YP_003921904.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           amyloliquefaciens DSM 7]
 gi|166201799|sp|A7Z939|CLPP_BACA2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|154353436|gb|ABS75515.1| ClpP [Bacillus amyloliquefaciens FZB42]
 gi|307608063|emb|CBI44434.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           amyloliquefaciens DSM 7]
 gi|328555171|gb|AEB25663.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           amyloliquefaciens TA208]
 gi|328913529|gb|AEB65125.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           amyloliquefaciens LL3]
          Length = 198

 Score =  248 bits (633), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 110/190 (57%), Positives = 153/190 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFLEAE+P+K+I
Sbjct: 1   MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGG +TAGMAIYDTMQFIKP +ST C+G AASMG+ LL+AGEKG R+ALPN+ +
Sbjct: 61  SIYINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN++  +  G+  E +E+  DRD+  SA EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSADEA 180

Query: 196 CDWGVVDKVL 205
            ++G++DKVL
Sbjct: 181 LEYGLIDKVL 190


>gi|304437034|ref|ZP_07396997.1| ATP-dependent Clp protease proteolytic subunit [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
 gi|304369985|gb|EFM23647.1| ATP-dependent Clp protease proteolytic subunit [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
          Length = 203

 Score =  248 bits (633), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 114/198 (57%), Positives = 157/198 (79%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VPMVVE + RGER+YDIYSRLLKERI+F+ G I+D +A +I AQ+LFLE+E+P K+I LY
Sbjct: 5   VPMVVETSGRGERAYDIYSRLLKERIIFLGGPIDDSVANVIVAQMLFLESEDPDKDIHLY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGVVTAG+AIYDTMQ+IKP +ST C+GQAASMGS+LL+AG KG R+ALP+ARI++H
Sbjct: 65  INSPGGVVTAGLAIYDTMQYIKPDVSTICVGQAASMGSILLTAGAKGKRYALPHARIMIH 124

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQ++DI+  A++I++++   NEI   + G+  E++    +RD+ MSA EA ++
Sbjct: 125 QPLGGAQGQSTDIQIQAKEILRLREVGNEILAHHTGQDTEKINVDTERDNFMSAEEAKEY 184

Query: 199 GVVDKVLMSRIDIEEKSK 216
           G++D+V++   D    SK
Sbjct: 185 GLIDEVVLRPKDTSADSK 202


>gi|156362486|ref|XP_001625808.1| predicted protein [Nematostella vectensis]
 gi|156212658|gb|EDO33708.1| predicted protein [Nematostella vectensis]
          Length = 228

 Score =  248 bits (633), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 117/199 (58%), Positives = 155/199 (77%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMV+E T RGER+YDI+SRLLKERIV V G + D  ++L+ AQLLFL++E+ +  I +
Sbjct: 27  LVPMVIESTGRGERAYDIFSRLLKERIVCVMGPVTDETSSLVIAQLLFLQSESSKLPIHM 86

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VT+G+ IYDTMQ+I+PPIST+C+GQA SMGSLLL+AG  G+R ALP++RI++
Sbjct: 87  YINSPGGTVTSGLGIYDTMQYIQPPISTWCVGQACSMGSLLLAAGSPGLRHALPHSRIMV 146

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG SGQA+DI   A++I+K+KR LN IYVK+ GK  E +E+ L+RD  MS  EA +
Sbjct: 147 HQPHGGASGQATDIAIQAEEILKLKRVLNGIYVKHTGKDMETIEQALERDKFMSPEEAKE 206

Query: 198 WGVVDKVLMSRIDIEEKSK 216
           +G++D+VL      EE  K
Sbjct: 207 FGLIDRVLAHPPTNEELKK 225


>gi|325291111|ref|YP_004267292.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324966512|gb|ADY57291.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 202

 Score =  248 bits (632), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 113/189 (59%), Positives = 153/189 (80%), Gaps = 1/189 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQTNRGERSYDIYSRLLK+RI+F+ GQ++D+MA LI AQLLFL+AE+P+K+I L
Sbjct: 4   LVPMVVEQTNRGERSYDIYSRLLKDRIIFLGGQVDDYMANLIVAQLLFLDAEDPEKDIFL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG ++AGMAIYDTMQ ++  + T C+G AASMG+ LL++G KG R ALPN+ IL+
Sbjct: 64  YINSPGGSISAGMAIYDTMQHVRADVHTICVGLAASMGAFLLASGAKGKRTALPNSEILI 123

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP  GG SGQA++IE HA+ I+++K R+N +  +  G+  E +E+  DRD  ++A EA 
Sbjct: 124 HQPLLGGLSGQATEIEIHAKHILRVKERMNRLLAEMTGQPVERIEQDTDRDRYLTAQEAK 183

Query: 197 DWGVVDKVL 205
           ++G+VD++L
Sbjct: 184 EYGLVDQIL 192


>gi|291550775|emb|CBL27037.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ruminococcus
           torques L2-14]
          Length = 193

 Score =  248 bits (632), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 114/193 (59%), Positives = 155/193 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLLKERI+F+  ++ D  A++I AQLLFLEA++P K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLKERIIFLGEEVNDVSASVIVAQLLFLEADDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG+AIYDTMQ+IK  +ST C+G AASMG+ LLS G+KG RFALPNA I
Sbjct: 61  QLYINSPGGSVTAGLAIYDTMQYIKCDVSTVCIGMAASMGAFLLSGGKKGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I+  A+ I++ K++LNEI   N GK  E +++  +RD+ MSA EA
Sbjct: 121 MIHQPSGGAQGQATEIQIAAEHILRTKKKLNEILAANTGKPLEVIQQDTERDNFMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++D+V+++ 
Sbjct: 181 KEYGLIDEVIVNH 193


>gi|297616502|ref|YP_003701661.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297144339|gb|ADI01096.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 203

 Score =  248 bits (632), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 111/188 (59%), Positives = 149/188 (79%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+VVEQT+RGER+YDIYSRLLK+RIVF+   I+D +A LI AQ LFLEAE+P K+I  
Sbjct: 7   LVPIVVEQTSRGERAYDIYSRLLKDRIVFLGSPIDDQVANLIIAQFLFLEAEDPDKDIHF 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG ++AGMAI+DTMQ+++P +ST C+G AASMG+ LL+AG KG RFALPN+ I++
Sbjct: 67  YINSPGGSISAGMAIFDTMQYLRPDVSTICVGMAASMGAFLLAAGAKGKRFALPNSEIMI 126

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE HA+ IV +K+RLN+I  +  G+  E +E+ ++RD  M+A EA  
Sbjct: 127 HQPIGGTQGQATDIEIHARRIVNLKKRLNQILAERTGQKLEVIERDVERDFFMTAEEAKA 186

Query: 198 WGVVDKVL 205
           +G++D + 
Sbjct: 187 YGIIDDIF 194


>gi|311069969|ref|YP_003974892.1| ATP-dependent Clp protease proteolytic subunit [Bacillus atrophaeus
           1942]
 gi|310870486|gb|ADP33961.1| ATP-dependent Clp protease proteolytic subunit [Bacillus atrophaeus
           1942]
          Length = 198

 Score =  248 bits (632), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 110/190 (57%), Positives = 153/190 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFLEAE+P+K+I
Sbjct: 1   MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGG +TAGMAIYDTMQFIKP +ST C+G AASMG+ LL+AGEKG R+ALPN+ +
Sbjct: 61  SIYINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN++  +  G+  E +E+  DRD+  SA EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEA 180

Query: 196 CDWGVVDKVL 205
            ++G++DKVL
Sbjct: 181 MEYGLIDKVL 190


>gi|322383234|ref|ZP_08057045.1| ATP-dependent Clp protease proteolytic subunit-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321152503|gb|EFX45289.1| ATP-dependent Clp protease proteolytic subunit-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 191

 Score =  248 bits (632), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 113/192 (58%), Positives = 155/192 (80%), Gaps = 1/192 (0%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MVVEQ  RGERSYDIYSRLLK+RI+F+   I+D +  L+ AQLLFL A++  K+I LYIN
Sbjct: 1   MVVEQEARGERSYDIYSRLLKDRIIFIGSAIDDDVVNLVIAQLLFLSAQDADKDIHLYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGG VTAG+ IYDTMQ+IKP +ST C+G AASMGSLLL+AG KG RFALPN+ +++HQP
Sbjct: 61  SPGGSVTAGLGIYDTMQYIKPDVSTICVGMAASMGSLLLTAGAKGKRFALPNSEVMIHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            GG  GQA+DI+ HA  I+K +++LNEIYV + G+TY++++K  DRD+ +SA +A ++G+
Sbjct: 121 LGGVRGQAADIKIHADWILKTRKKLNEIYVHHTGQTYDKIDKDTDRDNFLSALDAKEYGL 180

Query: 201 VDKVLMSRIDIE 212
           +D+V+ +R D++
Sbjct: 181 IDEVI-TRSDLK 191


>gi|297531315|ref|YP_003672590.1| ATP-dependent Clp protease proteolytic subunit ClpP [Geobacillus
           sp. C56-T3]
 gi|297254567|gb|ADI28013.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus
           sp. C56-T3]
          Length = 196

 Score =  248 bits (632), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 112/188 (59%), Positives = 151/188 (80%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P V+EQTNRGER+YDIYSRLLK+RIVF+   I+D +A  I +QLLFL AE+P+K+ISL
Sbjct: 3   LIPTVIEQTNRGERAYDIYSRLLKDRIVFLGSPIDDQVANSIVSQLLFLAAEDPEKDISL 62

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TAG+AIYDTMQFIKP +ST C+G AASMG+ LL+AG KG RFALPN+ I++
Sbjct: 63  YINSPGGSITAGLAIYDTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEIMI 122

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA++IE  A+ I+ ++ +LN I  +N G+  E +E+  DRD+ M+A +A +
Sbjct: 123 HQPLGGAQGQATEIEIAAKRILFLRDKLNRILSENTGQPIEVIERDTDRDNFMTAQKAME 182

Query: 198 WGVVDKVL 205
           +G++D+VL
Sbjct: 183 YGIIDRVL 190


>gi|156541196|ref|XP_001599209.1| PREDICTED: hypothetical protein [Nasonia vitripennis]
          Length = 234

 Score =  248 bits (632), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 112/190 (58%), Positives = 152/190 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           L LVP+VVEQT RGER+YDIYSRLLKERI+ + G I D +++L+ AQLLFL++E+ +K I
Sbjct: 23  LNLVPIVVEQTGRGERAYDIYSRLLKERIICLMGPITDDISSLVVAQLLFLQSESSKKPI 82

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVTAG+ IYDTMQ++ PP++T+C+GQA SM SLLL+AG  GMR ALPNARI
Sbjct: 83  HLYINSPGGVVTAGLGIYDTMQYVLPPVATWCVGQACSMASLLLAAGAPGMRHALPNARI 142

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+DI   A++I+K+K ++N +Y K+ G   + +E  ++RD  M+  EA
Sbjct: 143 MIHQPSGGVQGQATDIRIQAEEILKLKGQINALYAKHTGLDIQRIENNMERDKFMTPIEA 202

Query: 196 CDWGVVDKVL 205
            ++G++DKVL
Sbjct: 203 KEFGIIDKVL 212


>gi|115311786|sp|Q2GD19|CLPP_NEOSM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
          Length = 201

 Score =  248 bits (632), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 118/193 (61%), Positives = 160/193 (82%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVV+QT RGER+YDI+SRLLKER+VF+TG IED MA+LI AQLLFLEAENP K+I
Sbjct: 1   MNLVPMVVDQTPRGERAYDIFSRLLKERVVFLTGPIEDGMASLIVAQLLFLEAENPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG++IYDTMQ+IKP +ST C+GQAAS  SL+L++G +G RFALP++R+
Sbjct: 61  FMYINSPGGVVTAGLSIYDTMQYIKPSVSTVCVGQAASAASLILASGAEGKRFALPHSRV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+D+E H ++I+++KR +NEIY K+ G+T +++E  L+RD  +S  EA
Sbjct: 121 MVHQPSGGVRGQATDMEIHVKEILQLKRMINEIYQKHTGETIKKIETLLERDTFLSPEEA 180

Query: 196 CDWGVVDKVLMSR 208
              G++D ++  R
Sbjct: 181 KKVGIIDDIITQR 193


>gi|188585728|ref|YP_001917273.1| ATP-dependent Clp protease proteolytic subunit ClpP [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|259585960|sp|B2A158|CLPP_NATTJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|179350415|gb|ACB84685.1| ATP-dependent Clp protease proteolytic subunit ClpP [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 197

 Score =  248 bits (632), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 113/190 (59%), Positives = 149/190 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+PMV+EQTNRGERSYDIYSRLLK+RI+F+   I D +A  + AQ+LFLE+E+P K+I
Sbjct: 1   MNLIPMVIEQTNRGERSYDIYSRLLKDRIIFIGTGINDDIANSVIAQMLFLESEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG V AG+AIYDTMQ+I+  +ST C+G AASMG++LL+AG +G RF LPN+RI
Sbjct: 61  HLYINSPGGHVHAGLAIYDTMQYIRSDVSTICVGMAASMGAVLLAAGNEGKRFCLPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +LHQP GG  GQA+D+E HA++I+K K RLN+I   + G+  E++ K  DRD  MS+ EA
Sbjct: 121 MLHQPMGGAQGQAADVEIHAREIMKTKERLNQILAHHTGQPVEQISKDTDRDFFMSSEEA 180

Query: 196 CDWGVVDKVL 205
             +GV+D VL
Sbjct: 181 QKYGVIDDVL 190


>gi|187925164|ref|YP_001896806.1| ATP-dependent Clp protease proteolytic subunit ClpP [Burkholderia
           phytofirmans PsJN]
 gi|187716358|gb|ACD17582.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           phytofirmans PsJN]
          Length = 215

 Score =  248 bits (632), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 112/193 (58%), Positives = 150/193 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LGLVP V+EQ+ RGER+YDIYSRLL+ERIVF+ G + +  A+LI AQLLFLE+ENP K+I
Sbjct: 11  LGLVPTVIEQSGRGERAYDIYSRLLRERIVFLVGPVNEQSASLIVAQLLFLESENPDKDI 70

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG V  G+AIYDTMQFIKP +ST C G AASMG+ LL+AG++G R+ALPNARI
Sbjct: 71  CFYINSPGGSVYDGLAIYDTMQFIKPEVSTLCTGFAASMGTFLLTAGQRGKRYALPNARI 130

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  G A+D+E  A++++ ++ RLN +  +  G++ E + +  DRD+ MSA  A
Sbjct: 131 MIHQPSGGSQGTAADVEIQAKEVLYLRERLNAMMAERTGRSIEAIARDTDRDNFMSAQSA 190

Query: 196 CDWGVVDKVLMSR 208
             +G+VD+VL +R
Sbjct: 191 KTYGLVDEVLETR 203


>gi|313110498|ref|ZP_07796383.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa 39016]
 gi|310882885|gb|EFQ41479.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa 39016]
          Length = 213

 Score =  248 bits (632), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 121/192 (63%), Positives = 154/192 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMVVEQ+ RGER+YDIYSRLLKERI+F+ GQ+ED+MA L+ AQLLFLEAENP+K+I 
Sbjct: 18  GLVPMVVEQSARGERAYDIYSRLLKERIIFLVGQVEDYMANLVVAQLLFLEAENPEKDIH 77

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+LLL+ G  G R+ LP++R++
Sbjct: 78  LYINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGALLLAGGAAGKRYCLPHSRMM 137

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+ IK RLN+I   +  +  + + +  DRD  MS  EA 
Sbjct: 138 IHQPLGGFQGQASDIEIHAKEILFIKERLNQILAHHTRQPLDVIARDTDRDRFMSGDEAV 197

Query: 197 DWGVVDKVLMSR 208
            +G++DKV+  R
Sbjct: 198 KYGLIDKVMTQR 209


>gi|18420643|ref|NP_568427.1| NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7); serine-type endopeptidase
           [Arabidopsis thaliana]
 gi|75309225|sp|Q9FN42|CLPP2_ARATH RecName: Full=ATP-dependent Clp protease proteolytic subunit 2,
           mitochondrial; AltName: Full=Endopeptidase ClpP2;
           AltName: Full=nClpP7; Flags: Precursor
 gi|9759372|dbj|BAB09831.1| ATP-dependent protease proteolytic subunit ClpP-like protein
           [Arabidopsis thaliana]
 gi|26452073|dbj|BAC43126.1| putative ATP-dependent protease proteolytic subunit ClpP
           [Arabidopsis thaliana]
 gi|28950803|gb|AAO63325.1| At5g23140 [Arabidopsis thaliana]
 gi|332005743|gb|AED93126.1| ATP-dependent Clp protease proteolytic subunit 2 [Arabidopsis
           thaliana]
          Length = 241

 Score =  248 bits (632), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 110/191 (57%), Positives = 149/191 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+PMV+E ++RGER+YDI+SRLLKERI+ + G I D  + ++ AQLL+LE+ENP K I +
Sbjct: 32  LIPMVIEHSSRGERAYDIFSRLLKERIICINGPINDDTSHVVVAQLLYLESENPSKPIHM 91

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG VTAG+AIYDTMQ+I+ PIST C+GQAASM SLLL+AG KG R +LPNA +++
Sbjct: 92  YLNSPGGHVTAGLAIYDTMQYIRSPISTICLGQAASMASLLLAAGAKGQRRSLPNATVMI 151

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG+SGQA DI  H + IV++   LNE+YVK+ G+  + V   +DRDH M+  EA  
Sbjct: 152 HQPSGGYSGQAKDITIHTKQIVRVWDALNELYVKHTGQPLDVVANNMDRDHFMTPEEAKA 211

Query: 198 WGVVDKVLMSR 208
           +G++D+V+  R
Sbjct: 212 FGIIDEVIDER 222


>gi|297808311|ref|XP_002872039.1| hypothetical protein ARALYDRAFT_910322 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297317876|gb|EFH48298.1| hypothetical protein ARALYDRAFT_910322 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 237

 Score =  248 bits (632), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 110/191 (57%), Positives = 149/191 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+PMV+E ++RGER+YDI+SRLLKERI+ + G I D  + ++ AQLL+LE+ENP K I +
Sbjct: 28  LIPMVIEHSSRGERAYDIFSRLLKERIICINGPINDDTSHVVVAQLLYLESENPSKPIHM 87

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG VTAG+AIYDTMQ+I+ PIST C+GQAASM SLLL+AG KG R +LPNA +++
Sbjct: 88  YLNSPGGHVTAGLAIYDTMQYIRSPISTICLGQAASMASLLLAAGAKGQRRSLPNATVMI 147

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG+SGQA DI  H + IV++   LNE+YVK+ G+  + V   +DRDH M+  EA  
Sbjct: 148 HQPSGGYSGQAKDITIHTKQIVRVWDALNELYVKHTGQPLDVVANNMDRDHFMTPEEAKA 207

Query: 198 WGVVDKVLMSR 208
           +G++D+V+  R
Sbjct: 208 FGIIDEVIDER 218


>gi|288554081|ref|YP_003426016.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           pseudofirmus OF4]
 gi|288545241|gb|ADC49124.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           pseudofirmus OF4]
          Length = 195

 Score =  248 bits (632), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 111/192 (57%), Positives = 152/192 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RI+ +   I+D++A  I AQLLFL+AE+P+K+I
Sbjct: 1   MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVAQLLFLQAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG +TAGMAIYDTM FIKP +ST C+G AASMG+ LL+AGE G R ALPN+ +
Sbjct: 61  SLYINSPGGSITAGMAIYDTMNFIKPKVSTICIGMAASMGAFLLAAGEPGKRLALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDIE HA+ I++++  LN+I  +  G+  E + +  DRD+ M+AS A
Sbjct: 121 MIHQPLGGTRGQASDIEIHARRIIEMRETLNKILAERTGQPLEVIARDTDRDNFMTASRA 180

Query: 196 CDWGVVDKVLMS 207
            ++G++D+V+ S
Sbjct: 181 KEYGLIDEVISS 192


>gi|157693854|ref|YP_001488316.1| ATP-dependent Clp protease proteolytic subunit [Bacillus pumilus
           SAFR-032]
 gi|167008647|sp|A8FHN9|CLPP_BACP2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|157682612|gb|ABV63756.1| S14 family endopeptidase ClpP [Bacillus pumilus SAFR-032]
          Length = 198

 Score =  247 bits (631), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 109/190 (57%), Positives = 152/190 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFLEAE+P+K+I
Sbjct: 1   MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGG +TAGMAIYDTMQFIKP +ST C+G AASMG+ LL+AGEKG R+ALPN+ +
Sbjct: 61  SIYINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN++  +  G+  E +E+  DRD+  +A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILSLRDKLNQVLAERTGQPIEVIERDTDRDNFKTAEEA 180

Query: 196 CDWGVVDKVL 205
             +G++DKVL
Sbjct: 181 LQYGLIDKVL 190


>gi|296330330|ref|ZP_06872811.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305676065|ref|YP_003867737.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
           subsp. spizizenii str. W23]
 gi|296152598|gb|EFG93466.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305414309|gb|ADM39428.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
           subsp. spizizenii str. W23]
          Length = 198

 Score =  247 bits (631), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 109/190 (57%), Positives = 153/190 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFLEAE+P+K+I
Sbjct: 1   MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGG +TAGMAIYDTMQFIKP +ST C+G AASMG+ LL+AGEKG R+ALPN+ +
Sbjct: 61  SIYINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN++  +  G+  E +E+  DRD+  SA EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEA 180

Query: 196 CDWGVVDKVL 205
            ++G++DK+L
Sbjct: 181 LEYGLIDKIL 190


>gi|89098789|ref|ZP_01171670.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sp. NRRL
           B-14911]
 gi|89086465|gb|EAR65585.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sp. NRRL
           B-14911]
          Length = 201

 Score =  247 bits (631), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 112/199 (56%), Positives = 158/199 (79%), Gaps = 1/199 (0%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RI+ +   I+D+++  I AQLLFLEAENP+K+I
Sbjct: 1   MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVSNSIVAQLLFLEAENPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGG +TAGMAIYDTMQ+I+P +ST C+G AASMG+ LL+AGEKG RFALPN+ +
Sbjct: 61  TLYINSPGGSITAGMAIYDTMQYIRPKVSTVCIGMAASMGAFLLAAGEKGKRFALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN+I  +  G+  E + K  DRD+ M+A  A
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILFLREKLNQILSERTGQPLEVIAKDTDRDNFMTAERA 180

Query: 196 CDWGVVDKVLMSRIDIEEK 214
            ++G++D+++ SR  +EEK
Sbjct: 181 LEYGLIDQII-SRNVLEEK 198


>gi|194015348|ref|ZP_03053964.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           pumilus ATCC 7061]
 gi|194012752|gb|EDW22318.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           pumilus ATCC 7061]
          Length = 198

 Score =  247 bits (631), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 109/190 (57%), Positives = 152/190 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFLEAE+P+K+I
Sbjct: 1   MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGG +TAGMAIYDTMQFIKP +ST C+G AASMG+ LL+AGEKG R+ALPN+ +
Sbjct: 61  SIYINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN++  +  G+  E +E+  DRD+  +A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILSLRDKLNQVLAERTGQPIEVIERDTDRDNFKTAEEA 180

Query: 196 CDWGVVDKVL 205
             +G++DKVL
Sbjct: 181 LQYGLIDKVL 190


>gi|310639654|ref|YP_003944412.1| ATP-dependent clp protease proteolytic subunit [Paenibacillus
           polymyxa SC2]
 gi|309244604|gb|ADO54171.1| ATP-dependent Clp protease proteolytic subunit [Paenibacillus
           polymyxa SC2]
          Length = 198

 Score =  247 bits (631), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 113/192 (58%), Positives = 149/192 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VPMVVEQ+NRGER+YDIYSRLLK+RI+ +   + D +A  I AQ+LFL AE+P+K+I
Sbjct: 1   MSYVPMVVEQSNRGERAYDIYSRLLKDRIILLGSDVNDVVANSIIAQMLFLAAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +TAGMAI+DTMQ+IKP +ST C+G AASMG+ LL+AG KG RFALPN+ I
Sbjct: 61  HLYINSPGGSITAGMAIFDTMQYIKPDVSTICVGMAASMGAFLLNAGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DIE  A+ I+K++ +LN I     G+  E +EK  DRD+ MSA +A
Sbjct: 121 MIHQPLGGAQGQATDIEIRARRILKMRDKLNRILADRTGQPLERIEKDTDRDYFMSADDA 180

Query: 196 CDWGVVDKVLMS 207
            ++G++DKVL S
Sbjct: 181 KEYGIIDKVLTS 192


>gi|300856458|ref|YP_003781442.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           ljungdahlii DSM 13528]
 gi|300436573|gb|ADK16340.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           ljungdahlii DSM 13528]
          Length = 194

 Score =  247 bits (631), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 113/192 (58%), Positives = 151/192 (78%), Gaps = 2/192 (1%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP+V++ TN GERSYDI+SRLLK+RIV + GQ+ D  A+ I AQLLFLE++NP  +I
Sbjct: 1   MSYVPVVIDHTNAGERSYDIFSRLLKDRIVMLNGQVTDEAASSIVAQLLFLESDNPDSDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           + YINSPGG +TAGMAIYDTMQ+I+  +ST C+G AASMGS LL+AG KG RFALPN+ I
Sbjct: 61  NFYINSPGGSITAGMAIYDTMQYIRSDVSTICVGMAASMGSFLLAAGAKGKRFALPNSEI 120

Query: 136 LLHQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           L+HQPS  GG  GQA+DIE H + ++ IK+++N +Y +  GK  E++EK ++RD+ MSA 
Sbjct: 121 LIHQPSVYGGMQGQATDIEIHTKWLLGIKKKMNRLYSEMTGKPIEKIEKDVERDYFMSAK 180

Query: 194 EACDWGVVDKVL 205
           EA D+G+VDK+L
Sbjct: 181 EALDYGLVDKIL 192


>gi|198433849|ref|XP_002124509.1| PREDICTED: similar to predicted protein isoform 1 [Ciona
           intestinalis]
          Length = 234

 Score =  247 bits (631), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 116/187 (62%), Positives = 152/187 (81%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP V+EQT RGER+YDIYSRLLKERIV +   ++D ++ LI AQLLFL++E+PQK I++Y
Sbjct: 38  VPFVIEQTGRGERTYDIYSRLLKERIVCLMAPVDDFVSGLIVAQLLFLQSESPQKPINMY 97

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           IN+PGG VT+G+AIYDTMQ IK P+ST+ +GQA+SMGSLLL+AGE GMR ALPN+RI++H
Sbjct: 98  INTPGGTVTSGLAIYDTMQLIKCPVSTWVVGQASSMGSLLLAAGEPGMRNALPNSRIMVH 157

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG SGQASDI   A +I K+K +LN++YV++ G+ YE +EK LDRD+ M   EA  +
Sbjct: 158 QPLGGASGQASDIVIQANEIKKVKEKLNKLYVQHTGQEYEVIEKALDRDNFMDPYEAKLF 217

Query: 199 GVVDKVL 205
           G++D VL
Sbjct: 218 GLIDNVL 224


>gi|237753395|ref|ZP_04583875.1| ATP-dependent clp protease proteolytic subunit [Helicobacter
           winghamensis ATCC BAA-430]
 gi|229375662|gb|EEO25753.1| ATP-dependent clp protease proteolytic subunit [Helicobacter
           winghamensis ATCC BAA-430]
          Length = 196

 Score =  247 bits (631), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 111/187 (59%), Positives = 151/187 (80%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP V+E+T RGER+YDIYSRLLK+RI+ ++GQI+D +A+ I AQLLFLEAE+P+K+I LY
Sbjct: 5   VPTVIEKTGRGERAYDIYSRLLKDRIILLSGQIDDGLASSIVAQLLFLEAEDPEKDIYLY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGVVT+G++IYDTM ++KP IST C+GQAASMG+ LLS G KG R++LPN+RI++H
Sbjct: 65  INSPGGVVTSGLSIYDTMNYVKPDISTICIGQAASMGAFLLSCGTKGKRYSLPNSRIMIH 124

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA++IE  A++I+++K  LNEI   N  +  E++ K  DRD  +SA EA ++
Sbjct: 125 QPLGGAQGQATEIEIQAKEILRLKSSLNEILASNTNQPLEKIAKDTDRDFYLSAKEAQEY 184

Query: 199 GVVDKVL 205
           G++D VL
Sbjct: 185 GLIDSVL 191


>gi|158522703|ref|YP_001530573.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfococcus
           oleovorans Hxd3]
 gi|259585950|sp|A8ZXB7|CLPP_DESOH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|158511529|gb|ABW68496.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfococcus
           oleovorans Hxd3]
          Length = 205

 Score =  247 bits (631), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 114/199 (57%), Positives = 153/199 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+PMV+EQT+RGER++DIYSRLLK+RIVF+   I+D  A L+ AQLLFLE+E+P K+I+ 
Sbjct: 3   LIPMVIEQTSRGERAFDIYSRLLKDRIVFIGSAIDDETANLLIAQLLFLESEDPDKDINF 62

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AGMAIYDTMQ+IK  I+T C+G AASMG+ LL+AG KG RF+LPN+RI++
Sbjct: 63  YINSPGGKVSAGMAIYDTMQYIKSDIATVCIGHAASMGAFLLAAGAKGKRFSLPNSRIMI 122

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A++I+++K  LN+I   + GK  E+++   DRD  MS  EA  
Sbjct: 123 HQPMGGAQGQASDIAIQAKEILRMKDILNQILAHHTGKPLEQIQVDTDRDFFMSGEEAKA 182

Query: 198 WGVVDKVLMSRIDIEEKSK 216
           +G+VD V+  R D+++  K
Sbjct: 183 YGIVDHVITDRSDLDKLEK 201


>gi|291548434|emb|CBL21542.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ruminococcus
           sp. SR1/5]
          Length = 193

 Score =  247 bits (631), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 117/193 (60%), Positives = 150/193 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLLK+RI+F+  ++ D  A LI AQLLFLEAE+P K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLKDRIIFLGEEVNDVSANLIVAQLLFLEAEDPSKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMAIYDTMQ+IK  +ST C+G AASMG+ LLS+G KG R+ALPN+ I
Sbjct: 61  QLYINSPGGSVTAGMAIYDTMQYIKCDVSTICLGMAASMGAFLLSSGAKGKRYALPNSTI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I+  A  I K K++LNEI   N G+  E VEK  DRD+ M+A EA
Sbjct: 121 MIHQPSGGAQGQATEIQIVADQIAKTKKKLNEILSANTGQPLEIVEKDTDRDNYMTAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D V++ +
Sbjct: 181 KAYGLIDGVVIHK 193


>gi|189219051|ref|YP_001939692.1| ATP-dependent Clp protease proteolytic subunit [Methylacidiphilum
           infernorum V4]
 gi|189185909|gb|ACD83094.1| ATP-dependent Clp protease proteolytic subunit [Methylacidiphilum
           infernorum V4]
          Length = 219

 Score =  247 bits (631), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 115/192 (59%), Positives = 153/192 (79%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++PMVVEQT RGER YDI+SRLLK+RIVF+   I+D+MA L+ AQLLFL+ E+P+K+I+L
Sbjct: 12  VIPMVVEQTGRGERGYDIFSRLLKDRIVFIGTPIDDNMANLVIAQLLFLQMEDPKKDINL 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YI+SPGG VTAGMAIYDTMQF+   ++T+C+GQAASM ++LL+AG KG RFALPNARI++
Sbjct: 72  YIHSPGGYVTAGMAIYDTMQFLSCDVNTYCIGQAASMAAVLLAAGTKGKRFALPNARIMI 131

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   AQ+I++ KR LNEI   +  +  E +EK  DRD  MSA +A  
Sbjct: 132 HQPLGGAQGQASDISIQAQEILRTKRLLNEILSYHTKQPLERIEKDTDRDFFMSAEDAKA 191

Query: 198 WGVVDKVLMSRI 209
           +G++D+V+ ++I
Sbjct: 192 YGIIDEVVKTKI 203


>gi|255647414|gb|ACU24172.1| unknown [Glycine max]
          Length = 238

 Score =  247 bits (631), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 110/191 (57%), Positives = 152/191 (79%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+PMV+E ++RGER+YDI+SRLLKERI+ + G I D  A ++ AQLLFLE+EN  K I++
Sbjct: 29  LIPMVIEHSSRGERAYDIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENSSKPINM 88

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG VTAG+AIYDTMQ+I+ P++T CMGQAASMGSLLL+AG KG R +LPNA I++
Sbjct: 89  YLNSPGGAVTAGLAIYDTMQYIRSPVNTICMGQAASMGSLLLAAGAKGERRSLPNATIMI 148

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG+SGQA DI  H + IV++   LNE+Y K+ G++ E ++  +DRD+ M+  EA +
Sbjct: 149 HQPSGGYSGQAKDIAIHTKHIVRVWDSLNELYAKHTGQSVEVIQTNMDRDNFMTPKEAKE 208

Query: 198 WGVVDKVLMSR 208
           +G++D+V+  R
Sbjct: 209 FGLIDEVIDQR 219


>gi|16080507|ref|NP_391334.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221311403|ref|ZP_03593250.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221315730|ref|ZP_03597535.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
           subsp. subtilis str. NCIB 3610]
 gi|221320645|ref|ZP_03601939.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
           subsp. subtilis str. JH642]
 gi|221324930|ref|ZP_03606224.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
           subsp. subtilis str. SMY]
 gi|321313004|ref|YP_004205291.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
           BSn5]
 gi|3287962|sp|P80244|CLPP_BACSU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Caseinolytic protease; AltName:
           Full=Endopeptidase Clp; AltName: Full=Stress protein G7
 gi|1945673|emb|CAB08043.1| hypothetical protein [Bacillus subtilis]
 gi|2635967|emb|CAB15459.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|2668494|gb|AAC46381.1| ClpP [Bacillus subtilis]
 gi|291485999|dbj|BAI87074.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
           subsp. natto BEST195]
 gi|320019278|gb|ADV94264.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
           BSn5]
          Length = 197

 Score =  247 bits (631), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 110/190 (57%), Positives = 152/190 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL AE+P+KEI
Sbjct: 1   MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG +TAGMAIYDTMQFIKP +ST C+G AASMG+ LL+AGEKG R+ALPN+ +
Sbjct: 61  SLYINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN++  +  G+  E +E+  DRD+  SA EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEA 180

Query: 196 CDWGVVDKVL 205
            ++G++DK+L
Sbjct: 181 LEYGLIDKIL 190


>gi|197123826|ref|YP_002135777.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Anaeromyxobacter sp. K]
 gi|226706439|sp|B4UAX9|CLPP_ANASK RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|196173675|gb|ACG74648.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Anaeromyxobacter sp. K]
          Length = 203

 Score =  247 bits (630), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 111/198 (56%), Positives = 157/198 (79%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVEQT+RGERSYDIYSRLLK+RI+F+   ++D +A +I AQLLFLE+E+P K+I+LY
Sbjct: 6   MPYVVEQTHRGERSYDIYSRLLKDRIIFLGTPVDDDVANVIIAQLLFLESEDPDKDINLY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VT+G+AIYDTMQ++KP +ST C+GQAASMG+ LL+ G  G RFA+PNARI++H
Sbjct: 66  INSPGGSVTSGLAIYDTMQYVKPQVSTICLGQAASMGAFLLAGGAAGKRFAVPNARIMIH 125

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           Q SGGF GQA+DIE  A++ +++K +LNEI  ++  +  E +E+  +RD+ MSA EA ++
Sbjct: 126 QLSGGFQGQATDIEIQAKEALRLKAKLNEIMARHTRQPIERIERDTERDYFMSAGEAKEY 185

Query: 199 GVVDKVLMSRIDIEEKSK 216
           G++D V + +   E+K +
Sbjct: 186 GLIDDVFLHKKAAEKKPQ 203


>gi|251794211|ref|YP_003008942.1| ATP-dependent Clp protease proteolytic subunit ClpP [Paenibacillus
           sp. JDR-2]
 gi|247541837|gb|ACS98855.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
           sp. JDR-2]
          Length = 195

 Score =  247 bits (630), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 113/190 (59%), Positives = 149/190 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VPMV+EQ+NRGER+YDIYSRLLK+RI+F+   + D +A  I AQ+LFL AE+P+K+I
Sbjct: 3   MNFVPMVIEQSNRGERAYDIYSRLLKDRIIFLGSGVNDVVANSIIAQMLFLAAEDPEKDI 62

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG +TAGMAIYDTMQ+IKP +ST C+G AASMG+ LL+AG  G R+ALPN+ +
Sbjct: 63  SLYINSPGGSITAGMAIYDTMQYIKPDVSTICVGMAASMGAFLLTAGAIGKRYALPNSEV 122

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDIE  A+ I+K++ +LN I  +  G+  E +EK  DRD+ MSA EA
Sbjct: 123 MIHQPLGGAEGQASDIEIRARRIIKMRDKLNGILAERSGQPLERIEKDTDRDYFMSAEEA 182

Query: 196 CDWGVVDKVL 205
             +G+VDKV+
Sbjct: 183 RQYGLVDKVI 192


>gi|56421597|ref|YP_148915.1| ATP-dependent Clp protease proteolytic subunit [Geobacillus
           kaustophilus HTA426]
 gi|261420500|ref|YP_003254182.1| ATP-dependent Clp protease proteolytic subunit [Geobacillus sp.
           Y412MC61]
 gi|319768169|ref|YP_004133670.1| ATP-dependent Clp protease proteolytic subunit ClpP [Geobacillus
           sp. Y412MC52]
 gi|67460172|sp|Q5KVD9|CLPP_GEOKA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|56381439|dbj|BAD77347.1| ATP-dependent Clp protease proteolytic subunit (class III
           heat-shock protein) [Geobacillus kaustophilus HTA426]
 gi|261376957|gb|ACX79700.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus
           sp. Y412MC61]
 gi|317113035|gb|ADU95527.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus
           sp. Y412MC52]
          Length = 196

 Score =  247 bits (630), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 112/188 (59%), Positives = 150/188 (79%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P V+EQTNRGER+YDIYSRLLK+RIVF+   I+D +A  I +QLLFL AE+P K+ISL
Sbjct: 3   LIPTVIEQTNRGERAYDIYSRLLKDRIVFLGSPIDDQVANSIVSQLLFLAAEDPDKDISL 62

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TAG+AIYDTMQFIKP +ST C+G AASMG+ LL+AG KG RFALPN+ I++
Sbjct: 63  YINSPGGSITAGLAIYDTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEIMI 122

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA++IE  A+ I+ ++ +LN I  +N G+  E +E+  DRD+ M+A +A +
Sbjct: 123 HQPLGGAQGQATEIEIAAKRILFLRDKLNRILSENTGQPIEVIERDTDRDNFMTAQKAME 182

Query: 198 WGVVDKVL 205
           +G++D+VL
Sbjct: 183 YGIIDRVL 190


>gi|89896100|ref|YP_519587.1| hypothetical protein DSY3354 [Desulfitobacterium hafniense Y51]
 gi|219670517|ref|YP_002460952.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Desulfitobacterium hafniense DCB-2]
 gi|116243113|sp|Q24S49|CLPP2_DESHY RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|89335548|dbj|BAE85143.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219540777|gb|ACL22516.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Desulfitobacterium hafniense DCB-2]
          Length = 202

 Score =  247 bits (630), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 114/191 (59%), Positives = 151/191 (79%), Gaps = 3/191 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMV+EQTNRGERSYDIYSRLLK+RI+F+ G + D +A L+ AQ+LFLEAE+P+K+I L
Sbjct: 4   LVPMVIEQTNRGERSYDIYSRLLKDRIIFLGGPVTDDVANLVVAQMLFLEAEDPEKDIFL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG ++AGMAIYDTMQ+I+  + T C+G AASMG+ LL+AG KG R ALPNA IL+
Sbjct: 64  YINSPGGSISAGMAIYDTMQYIRADVHTICVGLAASMGAFLLTAGAKGKRQALPNAEILI 123

Query: 138 HQP---SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           HQP    GG SGQA++IE HA+ ++++K R+N I  +  G+T E +E   DRD  M+A E
Sbjct: 124 HQPLIGGGGISGQATEIEIHAKHLLRVKERMNRILAERTGQTIERIEADTDRDRYMTAEE 183

Query: 195 ACDWGVVDKVL 205
           A ++G++D+VL
Sbjct: 184 AKEYGLIDEVL 194


>gi|109947464|ref|YP_664692.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter
           acinonychis str. Sheeba]
 gi|123066220|sp|Q17XD3|CLPP_HELAH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|109714685|emb|CAJ99693.1| ATP-dependent clp protease proteolytic subunit [Helicobacter
           acinonychis str. Sheeba]
          Length = 195

 Score =  247 bits (630), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 112/190 (58%), Positives = 152/190 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +G +P V+E T+RGERSYDIYSRLLK+RIV ++G+I D +A+ I AQLLFLEAE+P+K+I
Sbjct: 1   MGYIPYVIENTDRGERSYDIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+T+G++IYDTM FI+P +ST C+GQAASMG+ LLS G KG RF+LP++RI
Sbjct: 61  GLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDIE  + +I+++K  +N I  +N  ++ E + K  DRD  MSA EA
Sbjct: 121 MIHQPLGGAQGQASDIEIISNEIIRLKGLMNSILAQNSKQSLERIAKDTDRDFYMSALEA 180

Query: 196 CDWGVVDKVL 205
            ++G++DKVL
Sbjct: 181 KEYGLIDKVL 190


>gi|254797097|ref|YP_003081935.1| Clp protease [Neorickettsia risticii str. Illinois]
 gi|254590339|gb|ACT69701.1| Clp protease [Neorickettsia risticii str. Illinois]
          Length = 209

 Score =  247 bits (630), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 117/193 (60%), Positives = 161/193 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVV+QT RGER+YDI+SRLLKER+VF+TG IED MA+LI AQLLFLEAENP+K+I
Sbjct: 9   MNLVPMVVDQTPRGERAYDIFSRLLKERVVFLTGPIEDGMASLIVAQLLFLEAENPEKDI 68

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG++IYDTMQ+I+P +ST C+GQAAS  SL+L++G +G RFALP++R+
Sbjct: 69  FMYINSPGGVVTAGLSIYDTMQYIRPSVSTVCVGQAASAASLILASGAEGKRFALPHSRV 128

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+D+E H ++I+++KR +NEIY K+ G+T +++E  L+RD  +S  EA
Sbjct: 129 MVHQPSGGVRGQATDMEIHVKEILQLKRMINEIYRKHTGETIKKIETLLERDTFLSPEEA 188

Query: 196 CDWGVVDKVLMSR 208
              G++D ++  R
Sbjct: 189 KKVGLIDDIITQR 201


>gi|225874969|ref|YP_002756428.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Acidobacterium capsulatum ATCC 51196]
 gi|254763781|sp|C1F6W4|CLPP_ACIC5 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|225792091|gb|ACO32181.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Acidobacterium capsulatum ATCC 51196]
          Length = 196

 Score =  247 bits (630), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 110/191 (57%), Positives = 155/191 (81%), Gaps = 1/191 (0%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMV+EQTNRGER+YDIYSRLL++ I+F+   I+D +A L+ AQLLFL AE+P K+I
Sbjct: 1   MALVPMVIEQTNRGERAYDIYSRLLRDNIIFLGTPIDDQIANLVIAQLLFLSAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +TAG+AIYDTMQFIK  + T+C+GQAASMG+ LL +G  G RFALPN+RI
Sbjct: 61  QLYINSPGGSITAGLAIYDTMQFIKNDVVTYCIGQAASMGAFLLMSGTAGKRFALPNSRI 120

Query: 136 LLHQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           L+HQPS GG SGQA+DI+ HA++I++I+   N +  K+ G++ E +E+ ++RD IM+A +
Sbjct: 121 LIHQPSMGGLSGQATDIDIHAREILRIREITNNLMSKHTGQSLERIERDVERDFIMNAPQ 180

Query: 195 ACDWGVVDKVL 205
           A ++G++D+++
Sbjct: 181 AKEYGIIDEII 191


>gi|118474160|ref|YP_892812.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter fetus
           subsp. fetus 82-40]
 gi|118413386|gb|ABK81806.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           fetus subsp. fetus 82-40]
          Length = 196

 Score =  247 bits (630), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 112/187 (59%), Positives = 148/187 (79%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVE+T++GERSYDIYSRLLK+RI+ ++G+IED MA+ I AQ+LFLEAE+P K+I LY
Sbjct: 5   IPYVVERTSKGERSYDIYSRLLKDRIIMLSGEIEDAMASAIVAQMLFLEAEDPDKDIYLY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGVVT+G +IYDTM +IKP + T C+GQAASMG+ LLS G KG R+ALPN+RI++H
Sbjct: 65  INSPGGVVTSGFSIYDTMNYIKPDVCTICIGQAASMGAFLLSCGTKGKRYALPNSRIMIH 124

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA+DIE  A++I+++K  LN    KN G+   ++ K  DRD  MSA EA ++
Sbjct: 125 QPLGGARGQATDIEIQAKEILRLKEVLNSTLAKNTGQKLAKIAKDTDRDFFMSAHEAAEY 184

Query: 199 GVVDKVL 205
           G++D VL
Sbjct: 185 GLIDNVL 191


>gi|147797194|emb|CAN64666.1| hypothetical protein VITISV_024612 [Vitis vinifera]
          Length = 221

 Score =  247 bits (630), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 108/192 (56%), Positives = 152/192 (79%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            L+PMV+E ++RGER+YDI+SRLLKERIV + G I D  A ++ AQLLFLE+ENP K I 
Sbjct: 9   ALIPMVIEHSSRGERAYDIFSRLLKERIVCINGPISDDTAHVVVAQLLFLESENPSKPIH 68

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+NSPGG V+AG+AIYDTMQ+I+ P++T C+GQAASMGSLLL+AG KG R ALPNA I+
Sbjct: 69  MYLNSPGGAVSAGLAIYDTMQYIRSPVNTICLGQAASMGSLLLAAGAKGERRALPNATIM 128

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG+SGQA D+  H + I+++   LN +Y K+ G++ + ++K +DRD+ M+  EA 
Sbjct: 129 IHQPSGGYSGQAKDMTIHTKQIIRVWDSLNALYAKHTGQSLDIIQKNMDRDYFMTPEEAK 188

Query: 197 DWGVVDKVLMSR 208
           ++G++D+V+  R
Sbjct: 189 EFGIIDEVIDQR 200


>gi|225423749|ref|XP_002277069.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 241

 Score =  247 bits (630), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 108/192 (56%), Positives = 152/192 (79%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            L+PMV+E ++RGER+YDI+SRLLKERIV + G I D  A ++ AQLLFLE+ENP K I 
Sbjct: 29  ALIPMVIEHSSRGERAYDIFSRLLKERIVCINGPISDDTAHVVVAQLLFLESENPSKPIH 88

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+NSPGG V+AG+AIYDTMQ+I+ P++T C+GQAASMGSLLL+AG KG R ALPNA I+
Sbjct: 89  MYLNSPGGAVSAGLAIYDTMQYIRSPVNTICLGQAASMGSLLLAAGAKGERRALPNATIM 148

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG+SGQA D+  H + I+++   LN +Y K+ G++ + ++K +DRD+ M+  EA 
Sbjct: 149 IHQPSGGYSGQAKDMTIHTKQIIRVWDSLNALYAKHTGQSLDIIQKNMDRDYFMTPEEAK 208

Query: 197 DWGVVDKVLMSR 208
           ++G++D+V+  R
Sbjct: 209 EFGIIDEVIDQR 220


>gi|160893842|ref|ZP_02074625.1| hypothetical protein CLOL250_01396 [Clostridium sp. L2-50]
 gi|156864494|gb|EDO57925.1| hypothetical protein CLOL250_01396 [Clostridium sp. L2-50]
          Length = 193

 Score =  247 bits (630), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 114/193 (59%), Positives = 149/193 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLLK+RI+F+  ++ D  A+++ AQLLFLE+E+P K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLKDRIIFLGEEVNDTSASIVIAQLLFLESEDPSKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG VTAG+ IYDTMQ+IK  +ST C G AASMG+ LL+ G KG RFALPNA I
Sbjct: 61  SLYINSPGGSVTAGLGIYDTMQYIKCDVSTICCGMAASMGAFLLAGGAKGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++IE  A+ I+K K +LN +  +N GK YE +    +RD+ MSA EA
Sbjct: 121 MIHQPSGGSQGQATEIEIAAKHILKTKEKLNRMLSENTGKPYETIAADTERDNWMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
           C +G++D V+  R
Sbjct: 181 CAYGLIDSVIAKR 193


>gi|207091734|ref|ZP_03239521.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 194

 Score =  247 bits (630), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 113/194 (58%), Positives = 155/194 (79%), Gaps = 1/194 (0%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +G +P V+E T+RGERSYDIYSRLLK+RIV ++G+I D +A+ I AQLLFLEAE+P+K+I
Sbjct: 1   MGYIPYVIENTDRGERSYDIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+T+G++IYDTM FI+P +ST C+GQAASMG+ LLS G KG RF+LP++RI
Sbjct: 61  GLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDIE  + +I+++K  +N I + N G++ E++ K  DRD  MSA EA
Sbjct: 121 MIHQPLGGAQGQASDIEIISNEILRLKGLMNSI-LANSGQSLEQIAKDTDRDFYMSAKEA 179

Query: 196 CDWGVVDKVLMSRI 209
            ++G++DKVL   +
Sbjct: 180 KEYGLIDKVLQKNV 193


>gi|319650519|ref|ZP_08004659.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sp.
           2_A_57_CT2]
 gi|317397700|gb|EFV78398.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sp.
           2_A_57_CT2]
          Length = 201

 Score =  247 bits (630), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 112/199 (56%), Positives = 156/199 (78%), Gaps = 1/199 (0%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RI+ +   I+D++A  I AQLLFLEAENP+K+I
Sbjct: 1   MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVAQLLFLEAENPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGG +TAGMAIYDTMQFIKP + T C+G AASMG+ LL+AGEKG RFALPN+ +
Sbjct: 61  SIYINSPGGSITAGMAIYDTMQFIKPKVQTICIGMAASMGAFLLAAGEKGKRFALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN I  +  G+  E + +  DRD+ M+A  A
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILFLREKLNTILSERTGQPLEVIARDTDRDNFMTAERA 180

Query: 196 CDWGVVDKVLMSRIDIEEK 214
            ++G+VD+++ +R  ++EK
Sbjct: 181 LEYGLVDQII-TRNSLDEK 198


>gi|170086161|ref|XP_001874304.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164651856|gb|EDR16096.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 243

 Score =  247 bits (630), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 121/210 (57%), Positives = 155/210 (73%)

Query: 3   FEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQ 62
           F    +K S      LVP+V+EQT RGERSYDI+SRLL+ER++ + G I D  +TLI AQ
Sbjct: 29  FSQIQEKWSSPPSANLVPIVIEQTGRGERSYDIFSRLLRERVIMLHGTIRDSDSTLIVAQ 88

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           LLFLEAE+  K I LYINSPGG VTAG+AIYDTMQ++  PI T+ +G AASMGSLLL+AG
Sbjct: 89  LLFLEAEDSTKPIHLYINSPGGSVTAGLAIYDTMQYVSSPIHTYSLGLAASMGSLLLAAG 148

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
           EKG R  LPNA I++HQPSGG SGQASDI  HA++I++I++ L  IY ++CGK  E   +
Sbjct: 149 EKGKRHCLPNASIMIHQPSGGASGQASDIAIHAKEILRIRQVLTGIYQRHCGKDGESQAE 208

Query: 183 TLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
            L+RD+ M+A EA ++G+VD +L  R   E
Sbjct: 209 ALERDYYMTAQEAMEFGIVDGILEKRPSTE 238


>gi|261868693|ref|YP_003256615.1| ATP-dependent Clp protease proteolytic subunit [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|293391572|ref|ZP_06635906.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|261414025|gb|ACX83396.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|290952106|gb|EFE02225.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 188

 Score =  247 bits (630), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 118/188 (62%), Positives = 153/188 (81%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MVV+QT+RGER+YDIYSRLLK+R++F++G++ED+MA LI AQLLFLE+E+P K+I+LYIN
Sbjct: 1   MVVDQTSRGERAYDIYSRLLKDRVIFLSGEVEDNMANLIVAQLLFLESEDPDKDINLYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGG VTAGMAIYDTMQFIKP + T C+GQA SMG+ LL+ G  G R ALP+AR+++HQP
Sbjct: 61  SPGGSVTAGMAIYDTMQFIKPDVRTLCIGQACSMGAFLLAGGAAGKRGALPHARVMIHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            GGF GQASDI+ HAQ+I+KIK  LNE    + G+  E +EK  DRD+ MSA EA ++G+
Sbjct: 121 LGGFRGQASDIQIHAQEILKIKSTLNERLAFHTGQPIETIEKDTDRDNFMSAQEAKNYGL 180

Query: 201 VDKVLMSR 208
           +D+V   R
Sbjct: 181 IDEVFSKR 188


>gi|255323211|ref|ZP_05364346.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           showae RM3277]
 gi|255299734|gb|EET79016.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           showae RM3277]
          Length = 196

 Score =  246 bits (629), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 110/187 (58%), Positives = 152/187 (81%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+E+T++GERSYDIYSRLLK+RI+ ++G+IED MA+ I AQ+LFLEAE+P K+I LY
Sbjct: 5   IPYVIERTSKGERSYDIYSRLLKDRIIMLSGEIEDGMASAIVAQMLFLEAEDPDKDIYLY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGV+T+G +IYDTM +IKP + T C+GQAASMG+ LLS G +G R+ALPN+RI++H
Sbjct: 65  INSPGGVITSGFSIYDTMNYIKPDVCTICIGQAASMGAFLLSCGAQGKRYALPNSRIMIH 124

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA+DIE  A++I+++K  LN I  KN G+   +++K  DRD  MS++EA ++
Sbjct: 125 QPLGGARGQATDIEIQAKEILRMKEILNAILAKNTGQKLAKIQKDTDRDFFMSSAEAKEY 184

Query: 199 GVVDKVL 205
           G++DKVL
Sbjct: 185 GLIDKVL 191


>gi|226944447|ref|YP_002799520.1| ATP-dependent Clp protease proteolytic subunit [Azotobacter
           vinelandii DJ]
 gi|226719374|gb|ACO78545.1| Peptidase S14, ClpP [Azotobacter vinelandii DJ]
          Length = 211

 Score =  246 bits (629), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 119/192 (61%), Positives = 155/192 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+EQ+ RGER+YDIYSRLLKER++F+ GQ+ED+MA LI AQLLFLEAENP K+I 
Sbjct: 16  GLVPMVIEQSARGERAYDIYSRLLKERVIFMVGQVEDYMANLIVAQLLFLEAENPDKDIH 75

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+LLL+ G  G R+ LP++R++
Sbjct: 76  LYINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGALLLAGGAAGKRYCLPHSRMM 135

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+ I+ RLN+I   + G+  + + +  DRD+ MS  EA 
Sbjct: 136 IHQPLGGFQGQASDIEIHAREILTIRERLNKILAHHTGQPIDVIARDTDRDNFMSGEEAV 195

Query: 197 DWGVVDKVLMSR 208
            + ++D+VL+ R
Sbjct: 196 KYRLIDQVLVHR 207


>gi|20807119|ref|NP_622290.1| ATP-dependent Clp protease proteolytic subunit [Thermoanaerobacter
           tengcongensis MB4]
 gi|20515613|gb|AAM23894.1| Protease subunit of ATP-dependent Clp proteases [Thermoanaerobacter
           tengcongensis MB4]
          Length = 198

 Score =  246 bits (629), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 108/193 (55%), Positives = 154/193 (79%)

Query: 14  VFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQK 73
           +F+ LVP+VVEQTNRGER+YDI+SRLLK+RIVF+  +I D  A+L+ AQ+LFLEAE+P K
Sbjct: 2   IFMSLVPIVVEQTNRGERAYDIFSRLLKDRIVFLGDEINDTTASLVIAQMLFLEAEDPDK 61

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I LYINSPGG +TAG+AIYDTMQ+IKP + T C+G AASM + LL+AG KG RFALPN+
Sbjct: 62  DIWLYINSPGGSITAGLAIYDTMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNS 121

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            I++HQP GG  GQA+DI+ HA+ +++++ +L  I  +N G+  E+++  ++RD+ M+A 
Sbjct: 122 EIMIHQPWGGMQGQATDIKIHAERLLRLRDKLERILSENTGQPLEKIKADMERDYFMTAE 181

Query: 194 EACDWGVVDKVLM 206
           EA  +G++D +L+
Sbjct: 182 EAKTYGIIDDILV 194


>gi|226324366|ref|ZP_03799884.1| hypothetical protein COPCOM_02147 [Coprococcus comes ATCC 27758]
 gi|225206814|gb|EEG89168.1| hypothetical protein COPCOM_02147 [Coprococcus comes ATCC 27758]
          Length = 194

 Score =  246 bits (629), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 113/191 (59%), Positives = 150/191 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP VVEQT+RGERSYDIYSRLLK+RI+F+  ++ D  A+LI AQLLFLEAE+P+K+I  
Sbjct: 4   LVPYVVEQTSRGERSYDIYSRLLKDRIIFLDTEVNDASASLIVAQLLFLEAEDPEKDIQF 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG ++AGM+IYDTM +IK  +ST CMG AASMG+ LL+ G KG R+ALPNA I++
Sbjct: 64  YINSPGGSISAGMSIYDTMNYIKCDVSTMCMGMAASMGAFLLAGGAKGKRYALPNAEIMI 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQA++IE +AQ I+KI+ R+N +   N G++YE +    +RD+  +A EA  
Sbjct: 124 HQPSGGAQGQATEIEINAQHILKIRERMNRLMAANTGQSYETICADTERDNWKTAEEALA 183

Query: 198 WGVVDKVLMSR 208
           +G++DKV+ SR
Sbjct: 184 YGLIDKVITSR 194


>gi|163746712|ref|ZP_02154069.1| Endopeptidase Clp [Oceanibulbus indolifex HEL-45]
 gi|161379826|gb|EDQ04238.1| Endopeptidase Clp [Oceanibulbus indolifex HEL-45]
          Length = 218

 Score =  246 bits (629), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 118/198 (59%), Positives = 151/198 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQT+RGERSYDI+SRLLKERI+FV G I   M+ L+ AQLL LEAENP KEIS+
Sbjct: 12  LVPMVVEQTSRGERSYDIFSRLLKERIIFVNGPIHSGMSHLVVAQLLHLEAENPTKEISM 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG++IYDTMQ+IKP +ST   G AASMGS++   GEKGMRFALPNA +++
Sbjct: 72  YINSPGGEVTAGLSIYDTMQYIKPKVSTLICGMAASMGSVIAIGGEKGMRFALPNAEVMI 131

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  G A DI   A+ I + + R+ ++YVK+ G+  + V+K LDRD  M+  EA +
Sbjct: 132 HQPSGGSQGMAEDILISARHIERTRERMYQLYVKHSGQPLDVVQKALDRDLWMTPEEAKE 191

Query: 198 WGVVDKVLMSRIDIEEKS 215
           WG +D+++ SR   E+ +
Sbjct: 192 WGHLDEIVESRGKAEDAA 209


>gi|313906306|ref|ZP_07839649.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Eubacterium
           cellulosolvens 6]
 gi|313468862|gb|EFR64221.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Eubacterium
           cellulosolvens 6]
          Length = 193

 Score =  246 bits (629), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 114/191 (59%), Positives = 150/191 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P V+EQT RGERSYDIYSRLLK+RI+F+  ++ D  A L+ AQLLFLE+E+P K+I L
Sbjct: 3   LIPYVIEQTGRGERSYDIYSRLLKDRIIFLGEEVNDVSANLVVAQLLFLESEDPSKDIHL 62

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGMAIYDTMQ+IK  +ST C+G AASMG+ LL+ G KG R ALPNA I++
Sbjct: 63  YINSPGGSVTAGMAIYDTMQYIKCDVSTICLGLAASMGAFLLAGGTKGKRLALPNAEIMI 122

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  G+ASDIE  A+ I+KIK+R+N I  +N G+TYE+V+   + D+ ++A EA  
Sbjct: 123 HQPSGGAQGKASDIEIVAEQILKIKKRMNTILAENTGQTYEKVKADTELDNYLTAEEAKA 182

Query: 198 WGVVDKVLMSR 208
           +G++D V+ +R
Sbjct: 183 YGIIDSVITNR 193


>gi|138896648|ref|YP_001127101.1| ATP-dependent Clp protease proteolytic subunit [Geobacillus
           thermodenitrificans NG80-2]
 gi|196249350|ref|ZP_03148048.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus
           sp. G11MC16]
 gi|166201825|sp|A4ISQ2|CLPP_GEOTN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|134268161|gb|ABO68356.1| ATP-dependent Clp protease [Geobacillus thermodenitrificans NG80-2]
 gi|196211107|gb|EDY05868.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus
           sp. G11MC16]
          Length = 196

 Score =  246 bits (629), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 110/188 (58%), Positives = 151/188 (80%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P V+EQTNRGER+YDIYSRLLK+RI+F+   I+D +A  I +QLLFL AE+P+K+ISL
Sbjct: 3   LIPTVIEQTNRGERAYDIYSRLLKDRIIFLGSPIDDQVANSIVSQLLFLAAEDPEKDISL 62

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TAG+AIYDTMQFIKP +ST C+G AASMG+ LL+AG KG RFALPN+ +++
Sbjct: 63  YINSPGGSITAGLAIYDTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEVMI 122

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA++IE  A+ I+ ++ +LN I  +N G+  E +E+  DRD+ M+A +A +
Sbjct: 123 HQPLGGAQGQATEIEIAAKRILFLRDKLNRILAENTGQPIEVIERDTDRDNFMTAQKAQE 182

Query: 198 WGVVDKVL 205
           +G++D+VL
Sbjct: 183 YGIIDRVL 190


>gi|296232651|ref|XP_002761668.1| PREDICTED: putative ATP-dependent Clp protease proteolytic subunit,
           mitochondrial-like [Callithrix jacchus]
          Length = 273

 Score =  246 bits (629), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 115/191 (60%), Positives = 156/191 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           L L+P+VVEQT RGER+YDIYSRLL+ERIV V G I+D +A+L+ AQLLFL++E+ +K I
Sbjct: 52  LPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPI 111

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG+AIYDTMQ+I  PI T+C+GQAASMGSLLL+AG  GMR +LPN+RI
Sbjct: 112 HMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRI 171

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+DI   A++I+K+K++L  IY K+  ++ + +E  ++RD  MS  EA
Sbjct: 172 MIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEA 231

Query: 196 CDWGVVDKVLM 206
            ++G++DKVL+
Sbjct: 232 QEFGILDKVLV 242


>gi|118791462|ref|XP_319765.3| AGAP009019-PA [Anopheles gambiae str. PEST]
 gi|116117612|gb|EAA14822.3| AGAP009019-PA [Anopheles gambiae str. PEST]
          Length = 225

 Score =  246 bits (628), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 113/191 (59%), Positives = 152/191 (79%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
           FL LVP+VVEQT RGER+YDI+SRLLKERI+ + G I D +++LI AQLLFL++EN  K 
Sbjct: 24  FLNLVPIVVEQTGRGERAYDIFSRLLKERIICLMGPIHDDLSSLIVAQLLFLQSENGTKP 83

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I +YINSPGG VTAG+AIYDTMQ++KPP++T+C+GQA SMGSLLL+AG  GMR +LPNAR
Sbjct: 84  IHMYINSPGGSVTAGLAIYDTMQYVKPPVATWCVGQACSMGSLLLAAGAPGMRHSLPNAR 143

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQPSGG  GQA+DI+  A++I+K+K++L EIY K+   + + +   ++RD  +S  E
Sbjct: 144 IMIHQPSGGAQGQATDIQIQAEEILKLKKQLTEIYGKHTKTSLDVLYSKMERDTFLSPEE 203

Query: 195 ACDWGVVDKVL 205
           A   G++D VL
Sbjct: 204 AQTLGIIDTVL 214


>gi|291463558|pdb|3KTG|A Chain A, Structure Of Clpp From Bacillus Subtilis In Monoclinic
           Crystal Form
 gi|291463559|pdb|3KTG|B Chain B, Structure Of Clpp From Bacillus Subtilis In Monoclinic
           Crystal Form
 gi|291463560|pdb|3KTG|C Chain C, Structure Of Clpp From Bacillus Subtilis In Monoclinic
           Crystal Form
 gi|291463561|pdb|3KTG|D Chain D, Structure Of Clpp From Bacillus Subtilis In Monoclinic
           Crystal Form
 gi|291463562|pdb|3KTG|E Chain E, Structure Of Clpp From Bacillus Subtilis In Monoclinic
           Crystal Form
 gi|291463563|pdb|3KTG|F Chain F, Structure Of Clpp From Bacillus Subtilis In Monoclinic
           Crystal Form
 gi|291463564|pdb|3KTG|G Chain G, Structure Of Clpp From Bacillus Subtilis In Monoclinic
           Crystal Form
 gi|291463565|pdb|3KTH|A Chain A, Structure Of Clpp From Bacillus Subtilis In Orthorombic
           Crystal Form
 gi|291463566|pdb|3KTH|B Chain B, Structure Of Clpp From Bacillus Subtilis In Orthorombic
           Crystal Form
 gi|291463567|pdb|3KTH|C Chain C, Structure Of Clpp From Bacillus Subtilis In Orthorombic
           Crystal Form
 gi|291463568|pdb|3KTH|D Chain D, Structure Of Clpp From Bacillus Subtilis In Orthorombic
           Crystal Form
 gi|291463569|pdb|3KTH|E Chain E, Structure Of Clpp From Bacillus Subtilis In Orthorombic
           Crystal Form
 gi|291463570|pdb|3KTH|F Chain F, Structure Of Clpp From Bacillus Subtilis In Orthorombic
           Crystal Form
 gi|291463571|pdb|3KTH|G Chain G, Structure Of Clpp From Bacillus Subtilis In Orthorombic
           Crystal Form
          Length = 199

 Score =  246 bits (628), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 110/188 (58%), Positives = 151/188 (80%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P V+EQTNRGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL AE+P+KEISL
Sbjct: 2   LIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TAGMAIYDTMQFIKP +ST C+G AASMG+ LL+AGEKG R+ALPN+ +++
Sbjct: 62  YINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA++IE  A+ I+ ++ +LN++  +  G+  E +E+  DRD+  SA EA +
Sbjct: 122 HQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALE 181

Query: 198 WGVVDKVL 205
           +G++DK+L
Sbjct: 182 YGLIDKIL 189


>gi|165971139|gb|AAI58370.1| clpp protein [Xenopus (Silurana) tropicalis]
          Length = 228

 Score =  246 bits (628), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 114/193 (59%), Positives = 156/193 (80%)

Query: 14  VFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQK 73
           V   LVP+VVEQT RGER+YDIYSRLL+ERI+ V G I+D +++L+ AQLLFL++E+ +K
Sbjct: 11  VLSPLVPIVVEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSLVVAQLLFLQSESNKK 70

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
            I +YINSPGG VTAG+AIYDTMQ+I  PI T+C+GQAASMGSLLL+AG  GMR +LPN+
Sbjct: 71  PIHMYINSPGGSVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSSGMRHSLPNS 130

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           RI++HQPSGG  GQA+DI   A++I+K+K+++NEIY K+  +    +E  ++RD  MS +
Sbjct: 131 RIMIHQPSGGARGQATDIAIQAEEILKLKKQINEIYAKHTRQPLSVIESVMERDRYMSPT 190

Query: 194 EACDWGVVDKVLM 206
           EA ++G++DKVL+
Sbjct: 191 EAQEFGILDKVLV 203


>gi|327398620|ref|YP_004339489.1| ATP-dependent Clp protease proteolytic subunit [Hippea maritima DSM
           10411]
 gi|327181249|gb|AEA33430.1| ATP-dependent Clp protease proteolytic subunit [Hippea maritima DSM
           10411]
          Length = 205

 Score =  246 bits (628), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 108/193 (55%), Positives = 158/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+V+E+T +GER+YDIYSRLLK+RI+ + G+I D ++ +I +QLLFLE+E+P+K+I
Sbjct: 1   MNLVPIVIEKTPQGERAYDIYSRLLKDRIIMLNGEINDDVSNVIVSQLLFLESEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG+AIYDTMQ+IK  ++T C+G AASMG+LLL++G KG R++LP++RI
Sbjct: 61  FLYINSPGGSVTAGLAIYDTMQYIKCDVTTICIGSAASMGALLLASGTKGKRYSLPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG SGQA++IE HA++I+++K+ LNEI  K+ GK  + +EK  +RD+ M   EA
Sbjct: 121 MIHQPLGGISGQATEIEIHAKEILRLKKLLNEILAKHTGKRLKTIEKDTERDYFMDTKEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++DK++ SR
Sbjct: 181 LAYGIIDKIIYSR 193


>gi|71892027|ref|YP_277757.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
 gi|110816455|sp|Q493F8|CLPP_BLOPB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|71796133|gb|AAZ40884.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
          Length = 208

 Score =  246 bits (628), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 112/192 (58%), Positives = 151/192 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP V+E T RG+R YDI+S LLKERI+F+TG IED +A LI AQ++FLE+EN +K+I L
Sbjct: 17  VVPTVIEHTIRGDRVYDIFSLLLKERIIFMTGTIEDSVANLIVAQMMFLESENSEKDIHL 76

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+TAGM+IYDT+QF++P +STFCMGQAASM + LL++G KG RF LPNARI++
Sbjct: 77  YINSPGGVITAGMSIYDTIQFVRPDVSTFCMGQAASMSAFLLASGTKGKRFCLPNARIMI 136

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP G F GQA+DI  H ++I+KIK  +N++  K+ G++ + + K  +RD  +SA EA  
Sbjct: 137 HQPLGSFQGQATDIAIHTREILKIKNNINKLMAKHTGQSIDIINKDTERDCFLSADEAMK 196

Query: 198 WGVVDKVLMSRI 209
           +G+VD VL  RI
Sbjct: 197 YGLVDCVLSQRI 208


>gi|283797647|ref|ZP_06346800.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           sp. M62/1]
 gi|291074652|gb|EFE12016.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           sp. M62/1]
 gi|295092868|emb|CBK78975.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           cf. saccharolyticum K10]
 gi|295114657|emb|CBL35504.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [butyrate-producing bacterium SM4/1]
          Length = 193

 Score =  246 bits (628), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 113/193 (58%), Positives = 151/193 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+E T+RGERSYDI+SRLLKERIVF+  ++ D  A+LI AQLLFLE+E+P K+I
Sbjct: 1   MSLVPYVIESTSRGERSYDIFSRLLKERIVFLGEEVTDVSASLIVAQLLFLESEDPNKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMAIYDTM +IK  +ST C+G AASMG+ LL+ G KG R ALPNA +
Sbjct: 61  HLYINSPGGSVTAGMAIYDTMNYIKCDVSTICVGMAASMGAFLLAGGAKGKRLALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I+  A++I++ K++LNEI   N G+ YE +E+  DRD+ M+A EA
Sbjct: 121 MIHQPSGGARGQATEIQIVAENILRTKKKLNEILAANTGQPYEVIERDTDRDNYMTAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D+V+  R
Sbjct: 181 LKYGLIDRVIAGR 193


>gi|224081363|ref|XP_002306383.1| predicted protein [Populus trichocarpa]
 gi|118481948|gb|ABK92906.1| unknown [Populus trichocarpa]
 gi|222855832|gb|EEE93379.1| predicted protein [Populus trichocarpa]
          Length = 244

 Score =  246 bits (628), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 110/200 (55%), Positives = 153/200 (76%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           K S      L+PMV+E ++RGER+YDI+SRLLKERIV + G I D  + ++ AQLLFLE+
Sbjct: 26  KTSTTRAYSLIPMVIEHSSRGERAYDIFSRLLKERIVCINGPINDDTSNVVVAQLLFLES 85

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP K I +Y+NSPGG VTAG+AIYDTMQ+I+ P++T C+GQAASM SLLL++G KG R 
Sbjct: 86  ENPSKPIHMYLNSPGGHVTAGLAIYDTMQYIRSPVNTICLGQAASMASLLLASGAKGERK 145

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           ALPNA I++HQPSGG+SGQA D+  H + IV++   LN++Y K+ GK  + ++K +DRD+
Sbjct: 146 ALPNATIMIHQPSGGYSGQAKDLTIHTKQIVRVWDALNQLYCKHTGKPIDVIQKNMDRDY 205

Query: 189 IMSASEACDWGVVDKVLMSR 208
            M+  EA ++G++D+V+  R
Sbjct: 206 FMTPEEAKEFGIIDEVIDQR 225


>gi|301622698|ref|XP_002940664.1| PREDICTED: putative ATP-dependent Clp protease proteolytic subunit,
           mitochondrial [Xenopus (Silurana) tropicalis]
          Length = 247

 Score =  246 bits (628), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 114/193 (59%), Positives = 156/193 (80%)

Query: 14  VFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQK 73
           V   LVP+VVEQT RGER+YDIYSRLL+ERI+ V G I+D +++L+ AQLLFL++E+ +K
Sbjct: 30  VLSPLVPIVVEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSLVVAQLLFLQSESNKK 89

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
            I +YINSPGG VTAG+AIYDTMQ+I  PI T+C+GQAASMGSLLL+AG  GMR +LPN+
Sbjct: 90  PIHMYINSPGGSVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSSGMRHSLPNS 149

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           RI++HQPSGG  GQA+DI   A++I+K+K+++NEIY K+  +    +E  ++RD  MS +
Sbjct: 150 RIMIHQPSGGARGQATDIAIQAEEILKLKKQINEIYAKHTRQPLSVIESVMERDRYMSPT 209

Query: 194 EACDWGVVDKVLM 206
           EA ++G++DKVL+
Sbjct: 210 EAQEFGILDKVLV 222


>gi|258646880|ref|ZP_05734349.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dialister
           invisus DSM 15470]
 gi|260404319|gb|EEW97866.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dialister
           invisus DSM 15470]
          Length = 207

 Score =  246 bits (628), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 111/187 (59%), Positives = 148/187 (79%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP+VVEQT+ GERSYDIYSRLLK+RIVF+ G I+DH A +I AQ LFLEAE+P K+I  Y
Sbjct: 4   VPIVVEQTSHGERSYDIYSRLLKDRIVFLDGPIDDHTANVIIAQFLFLEAEDPDKDIHFY 63

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGVVTAGMAIYDTMQ+I+P +ST C+G  ASM ++LL+AGEKG R+ALP+A +++H
Sbjct: 64  INSPGGVVTAGMAIYDTMQYIRPDVSTICIGSCASMAAVLLTAGEKGKRYALPHASVMIH 123

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA+DI  HA++I++++  LN I   + G+T + V K  +RD+ M+A  A  +
Sbjct: 124 QPLGGAQGQATDIAIHAKEIIRLRSELNGIIAAHSGQTLKTVMKDTERDNFMTADAALKY 183

Query: 199 GVVDKVL 205
           G++DK+L
Sbjct: 184 GLIDKIL 190


>gi|189065189|dbj|BAG34912.1| unnamed protein product [Homo sapiens]
          Length = 277

 Score =  246 bits (627), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 115/191 (60%), Positives = 156/191 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           L L+P+VVEQT RGER+YDIYSRLL+ERIV V G I+D +A+L+ AQLLFL++E+ +K I
Sbjct: 56  LPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESSKKPI 115

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG+AIYDTMQ+I  PI T+C+GQAASMGSLLL+AG  GMR +LPN+RI
Sbjct: 116 HMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRI 175

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+DI   A++I+K+K++L  IY K+  ++ + +E  ++RD  MS  EA
Sbjct: 176 MIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEA 235

Query: 196 CDWGVVDKVLM 206
            ++G++DKVL+
Sbjct: 236 QEFGILDKVLV 246


>gi|86159772|ref|YP_466557.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|220918591|ref|YP_002493895.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|115311353|sp|Q2IEW1|CLPP_ANADE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|254763782|sp|B8J5G7|CLPP_ANAD2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|85776283|gb|ABC83120.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|219956445|gb|ACL66829.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 203

 Score =  246 bits (627), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 110/198 (55%), Positives = 157/198 (79%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVEQT+RGERSYDIYSRLLK+RI+F+   ++D +A +I AQLLFLE+E+P K+I+LY
Sbjct: 6   MPYVVEQTHRGERSYDIYSRLLKDRIIFLGTPVDDDVANVIIAQLLFLESEDPDKDINLY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VT+G+AIYDTMQ++KP +ST C+GQAASMG+ LL+ G  G RFA+PNARI++H
Sbjct: 66  INSPGGSVTSGLAIYDTMQYVKPQVSTICLGQAASMGAFLLAGGAAGKRFAVPNARIMIH 125

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           Q SGGF GQA+DIE  A++ +++K +LNEI  ++  +  E +E+  +RD+ MSA EA ++
Sbjct: 126 QLSGGFQGQATDIEIQAKEALRLKAKLNEIMARHTRQPIERIERDTERDYFMSAGEAKEY 185

Query: 199 GVVDKVLMSRIDIEEKSK 216
           G++D V + +   ++K +
Sbjct: 186 GLIDDVFLHKKAADKKPQ 203


>gi|307637483|gb|ADN79933.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           908]
          Length = 195

 Score =  246 bits (627), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 112/194 (57%), Positives = 152/194 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +G +P V+E T RGERSYDIYSRLLK+RIV ++G+I D +A+ I AQLLFLEAE+P+K+I
Sbjct: 1   MGYIPYVIENTERGERSYDIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+T+G++IYDTM FI+P +ST C+GQAASMG+ LLS G KG RF+LP++RI
Sbjct: 61  GLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDIE  + +I+++K  +N I  +N G++ E++ K  DRD  MSA EA
Sbjct: 121 MIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEA 180

Query: 196 CDWGVVDKVLMSRI 209
            ++G+  KVL   +
Sbjct: 181 KEYGLFYKVLQKNV 194


>gi|169334562|ref|ZP_02861755.1| hypothetical protein ANASTE_00965 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259279|gb|EDS73245.1| hypothetical protein ANASTE_00965 [Anaerofustis stercorihominis DSM
           17244]
          Length = 193

 Score =  246 bits (627), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 111/191 (58%), Positives = 150/191 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+PMVVE   R ERSYDIYSRLLK+RI+F++G+I D +A L+ A++LFLE++N +K+I L
Sbjct: 3   LIPMVVENEGRAERSYDIYSRLLKDRIIFLSGEINDDVANLVVAEMLFLESQNSEKDIQL 62

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGMAIYDTM +IK  +ST C+G AASMG+ LL+ GEKG R ALP++ I++
Sbjct: 63  YINSPGGSVTAGMAIYDTMNYIKCDVSTICIGMAASMGAFLLACGEKGKRIALPSSEIMI 122

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQ+SD+E HA+ ++K +  +N+I  K  GKT + +EK  DRD+ MSA EA +
Sbjct: 123 HQPLGGFQGQSSDVEIHAKRLLKTREDINKILSKRTGKTLKTIEKDTDRDNFMSAKEAME 182

Query: 198 WGVVDKVLMSR 208
           +G++DKV+  R
Sbjct: 183 YGLIDKVIEKR 193


>gi|225019943|ref|ZP_03709135.1| hypothetical protein CLOSTMETH_03897 [Clostridium methylpentosum
           DSM 5476]
 gi|224947307|gb|EEG28516.1| hypothetical protein CLOSTMETH_03897 [Clostridium methylpentosum
           DSM 5476]
          Length = 188

 Score =  246 bits (627), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 109/188 (57%), Positives = 150/188 (79%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MVVEQT+RGERSYDIYSRLL +RI+ ++ ++ D  A+L+ AQLL+LEA++P+K+I LYIN
Sbjct: 1   MVVEQTSRGERSYDIYSRLLNDRIIMLSDEVNDATASLVVAQLLYLEAQDPEKDIQLYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGG +T+GMAIYDTM +IK  +ST C+G AASMG+ LLSAG KG R ALPN+ I++HQP
Sbjct: 61  SPGGSITSGMAIYDTMNYIKSDVSTICIGMAASMGAFLLSAGAKGKRLALPNSEIMIHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
           SGG  GQA+DI   A+ I+K+K++LN++     G+  E++E+  +RD+ MSA EAC++G+
Sbjct: 121 SGGAQGQATDINIQAERIIKMKKQLNQMLADATGQPLEKIERDTERDNFMSAQEACEYGL 180

Query: 201 VDKVLMSR 208
           VDKV+  R
Sbjct: 181 VDKVIEKR 188


>gi|224094113|ref|XP_002310077.1| predicted protein [Populus trichocarpa]
 gi|222852980|gb|EEE90527.1| predicted protein [Populus trichocarpa]
          Length = 244

 Score =  246 bits (627), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 108/191 (56%), Positives = 151/191 (79%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+PMV+E ++RGER+YDI+SRLLKERIV + G I+D  + ++ AQLLFLE+ENP K I +
Sbjct: 35  LIPMVIEHSSRGERAYDIFSRLLKERIVCINGPIDDDTSHVVVAQLLFLESENPSKPIHM 94

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG VTAG+AIYDTMQ+I+ P++T C+GQAASM SLLL+AG KG R ALPNA I++
Sbjct: 95  YLNSPGGQVTAGLAIYDTMQYIRSPVTTICLGQAASMASLLLAAGAKGERKALPNATIMI 154

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG+SGQA D+  H + IV++   LN++Y K+ G+  + ++K +DRD+ M+  EA +
Sbjct: 155 HQPSGGYSGQAKDMTIHTKQIVRVWDALNQLYCKHTGQPLDVIQKNMDRDYFMTPEEAKE 214

Query: 198 WGVVDKVLMSR 208
           +G++D V+  R
Sbjct: 215 FGIIDDVIDQR 225


>gi|291463572|pdb|3KTI|A Chain A, Structure Of Clpp In Complex With Adep1
 gi|291463573|pdb|3KTI|B Chain B, Structure Of Clpp In Complex With Adep1
 gi|291463574|pdb|3KTI|C Chain C, Structure Of Clpp In Complex With Adep1
 gi|291463575|pdb|3KTI|D Chain D, Structure Of Clpp In Complex With Adep1
 gi|291463576|pdb|3KTI|E Chain E, Structure Of Clpp In Complex With Adep1
 gi|291463577|pdb|3KTI|F Chain F, Structure Of Clpp In Complex With Adep1
 gi|291463578|pdb|3KTI|G Chain G, Structure Of Clpp In Complex With Adep1
 gi|291463586|pdb|3KTJ|A Chain A, Structure Of Clpp In Complex With Adep2 In Monoclinic
           Crystal Form
 gi|291463587|pdb|3KTJ|B Chain B, Structure Of Clpp In Complex With Adep2 In Monoclinic
           Crystal Form
 gi|291463588|pdb|3KTJ|C Chain C, Structure Of Clpp In Complex With Adep2 In Monoclinic
           Crystal Form
 gi|291463589|pdb|3KTJ|D Chain D, Structure Of Clpp In Complex With Adep2 In Monoclinic
           Crystal Form
 gi|291463590|pdb|3KTJ|E Chain E, Structure Of Clpp In Complex With Adep2 In Monoclinic
           Crystal Form
 gi|291463591|pdb|3KTJ|F Chain F, Structure Of Clpp In Complex With Adep2 In Monoclinic
           Crystal Form
 gi|291463592|pdb|3KTJ|G Chain G, Structure Of Clpp In Complex With Adep2 In Monoclinic
           Crystal Form
 gi|291463593|pdb|3KTK|A Chain A, Structure Of Clpp In Complex With Adep2 In Triclinic
           Crystal Form
 gi|291463594|pdb|3KTK|B Chain B, Structure Of Clpp In Complex With Adep2 In Triclinic
           Crystal Form
 gi|291463595|pdb|3KTK|C Chain C, Structure Of Clpp In Complex With Adep2 In Triclinic
           Crystal Form
 gi|291463596|pdb|3KTK|D Chain D, Structure Of Clpp In Complex With Adep2 In Triclinic
           Crystal Form
 gi|291463597|pdb|3KTK|E Chain E, Structure Of Clpp In Complex With Adep2 In Triclinic
           Crystal Form
 gi|291463598|pdb|3KTK|F Chain F, Structure Of Clpp In Complex With Adep2 In Triclinic
           Crystal Form
 gi|291463599|pdb|3KTK|G Chain G, Structure Of Clpp In Complex With Adep2 In Triclinic
           Crystal Form
 gi|291463600|pdb|3KTK|H Chain H, Structure Of Clpp In Complex With Adep2 In Triclinic
           Crystal Form
 gi|291463601|pdb|3KTK|I Chain I, Structure Of Clpp In Complex With Adep2 In Triclinic
           Crystal Form
 gi|291463602|pdb|3KTK|J Chain J, Structure Of Clpp In Complex With Adep2 In Triclinic
           Crystal Form
 gi|291463603|pdb|3KTK|K Chain K, Structure Of Clpp In Complex With Adep2 In Triclinic
           Crystal Form
 gi|291463604|pdb|3KTK|L Chain L, Structure Of Clpp In Complex With Adep2 In Triclinic
           Crystal Form
 gi|291463605|pdb|3KTK|M Chain M, Structure Of Clpp In Complex With Adep2 In Triclinic
           Crystal Form
 gi|291463606|pdb|3KTK|N Chain N, Structure Of Clpp In Complex With Adep2 In Triclinic
           Crystal Form
          Length = 199

 Score =  246 bits (627), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 110/188 (58%), Positives = 151/188 (80%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P V+EQTNRGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL AE+P+KEISL
Sbjct: 2   LIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TAGMAIYDTMQFIKP +ST C+G AASMG+ LL+AGEKG R+ALPN+ +++
Sbjct: 62  YINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA++IE  A+ I+ ++ +LN++  +  G+  E +E+  DRD+  SA EA +
Sbjct: 122 HQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALE 181

Query: 198 WGVVDKVL 205
           +G++DK+L
Sbjct: 182 YGLIDKIL 189


>gi|326391008|ref|ZP_08212557.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325992953|gb|EGD51396.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 195

 Score =  246 bits (627), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 112/191 (58%), Positives = 151/191 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQTNRGERSYDI+SRLLK+RIVF+  +I D  A+L+ AQLLFLEAE+P K+I
Sbjct: 1   MSLVPIVVEQTNRGERSYDIFSRLLKDRIVFLGEEINDTTASLVIAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +TAG AIYDTMQ+IKP + T C+G AASM + LL+AG KG RFALPN+ I
Sbjct: 61  WLYINSPGGSITAGFAIYDTMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+ HA+ I+K++ +L++I  +N G+  E+++   +RD  M A EA
Sbjct: 121 MIHQPLGGMQGQATDIKIHAERILKLRDKLDKILAENTGQPIEKIKADTERDFFMDAEEA 180

Query: 196 CDWGVVDKVLM 206
             +G++D+VL+
Sbjct: 181 KAYGIIDEVLI 191


>gi|307730796|ref|YP_003908020.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           sp. CCGE1003]
 gi|307585331|gb|ADN58729.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           sp. CCGE1003]
          Length = 219

 Score =  246 bits (627), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 114/193 (59%), Positives = 149/193 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LGLVP V+EQ+ RGER+YDIYSRLL+ERIVF+ G + +  A+LI AQLLFLE+ENP K+I
Sbjct: 11  LGLVPTVIEQSGRGERAYDIYSRLLRERIVFLVGPVNEQSASLIVAQLLFLESENPDKDI 70

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S YINSPGG V  G+AIYDTMQFIKP +ST C G AASMG+ LL AG+ G R+ALPNARI
Sbjct: 71  SFYINSPGGSVYDGLAIYDTMQFIKPEVSTLCTGFAASMGTFLLCAGQPGKRYALPNARI 130

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  G A+DI+  A++++ ++ RLN +  +  G+  EE+ +  DRD+ MSA  A
Sbjct: 131 MIHQPSGGGQGTAADIDIQAKEVLYLRERLNTMMAERTGRGVEEIARDTDRDNFMSAFAA 190

Query: 196 CDWGVVDKVLMSR 208
             +G+VD+VL +R
Sbjct: 191 KAYGLVDEVLETR 203


>gi|294501768|ref|YP_003565468.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           megaterium QM B1551]
 gi|295707118|ref|YP_003600193.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bacillus
           megaterium DSM 319]
 gi|294351705|gb|ADE72034.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           megaterium QM B1551]
 gi|294804777|gb|ADF41843.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           megaterium DSM 319]
          Length = 195

 Score =  246 bits (627), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 110/190 (57%), Positives = 151/190 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL AE+P+K+I
Sbjct: 1   MNLIPTVIEQTNRGERAYDIYSRLLKDRIIILGSAIDDNVANSIVSQLLFLAAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG +TAGMAIYDTMQFIKP +ST C+G AASMG+ LL+AGEKG RFALPN+ +
Sbjct: 61  SLYINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRFALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN I  +  G+  E +++  DRD+ M+A  A
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILFLREKLNSILAERTGQPLEVLQRDTDRDNFMTAERA 180

Query: 196 CDWGVVDKVL 205
            ++G++DKVL
Sbjct: 181 LEYGLIDKVL 190


>gi|255658239|ref|ZP_05403648.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mitsuokella
           multacida DSM 20544]
 gi|260849549|gb|EEX69556.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mitsuokella
           multacida DSM 20544]
          Length = 199

 Score =  246 bits (627), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 114/196 (58%), Positives = 157/196 (80%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MVVE++N GER+YDIYSRLLK+RI+F+ G I+D +A  + AQLLFLE+E+P K+I LYIN
Sbjct: 1   MVVERSNTGERAYDIYSRLLKDRIIFLGGPIDDAVANTVVAQLLFLESEDPDKDIHLYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGGVVTAG+AIYDTMQ+IKP +ST C+GQAASMG+LLL+AG KG R+ALPNARI++HQP
Sbjct: 61  SPGGVVTAGLAIYDTMQYIKPDVSTICIGQAASMGALLLTAGAKGKRYALPNARIMIHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            GG  GQ++DI+  A++I +I+  +N+I V++ GK  E V +  +RD+ M+A EA  +G+
Sbjct: 121 LGGAQGQSTDIQIQAREIQRIREVINDILVESTGKDRETVVQDTERDNFMTAEEAKAYGL 180

Query: 201 VDKVLMSRIDIEEKSK 216
           VD+V+   +   +KS+
Sbjct: 181 VDEVITRPVKKGKKSE 196


>gi|317133441|ref|YP_004092755.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Ethanoligenens harbinense YUAN-3]
 gi|315471420|gb|ADU28024.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Ethanoligenens harbinense YUAN-3]
          Length = 194

 Score =  245 bits (626), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 110/191 (57%), Positives = 151/191 (79%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQT+RGERSYDI+SRLL +RI+ ++ Q+ D  A+L+ AQLLFLE ++P K+I L
Sbjct: 4   LVPYVIEQTSRGERSYDIFSRLLNDRIIMLSDQVNDVTASLVVAQLLFLEGQDPDKDIQL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +T+GMAI+DTMQ++K  +ST C+G AASMGS LL+AG KG RF LPN+ I++
Sbjct: 64  YINSPGGSITSGMAIFDTMQYVKCDVSTICIGMAASMGSFLLAAGTKGKRFVLPNSEIMI 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQASDI+  A+ I++I++R+NE+Y    GK  EE+E+  +RD+ ++A EA  
Sbjct: 124 HQPSGGAQGQASDIKIAAEHIIRIRKRMNELYSGFTGKPVEEIERDTERDNFLTAEEAVA 183

Query: 198 WGVVDKVLMSR 208
           +G+VDKV+  R
Sbjct: 184 YGLVDKVITKR 194


>gi|157737934|ref|YP_001490618.1| ATP-dependent Clp protease proteolytic subunit [Arcobacter butzleri
           RM4018]
 gi|315637681|ref|ZP_07892886.1| ATP-dependent Clp protease proteolytic subunit [Arcobacter butzleri
           JV22]
 gi|167008646|sp|A8EVH5|CLPP_ARCB4 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|157699788|gb|ABV67948.1| ATP-dependent Clp protease, proteolytic subunit [Arcobacter
           butzleri RM4018]
 gi|315478028|gb|EFU68756.1| ATP-dependent Clp protease proteolytic subunit [Arcobacter butzleri
           JV22]
          Length = 194

 Score =  245 bits (626), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 109/190 (57%), Positives = 150/190 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P VVE+T RGERSYDIYSRLLK+RI+ ++G+I D +A+ + AQLLFLEAE+P K+I
Sbjct: 1   MSYIPYVVEKTGRGERSYDIYSRLLKDRIIMLSGEINDAVASTVVAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVT+GM+I+DTM +IKP + T C+GQAASMG+ LLS+G KG R++LPN+RI
Sbjct: 61  YLYINSPGGVVTSGMSIFDTMNYIKPDVCTICIGQAASMGAFLLSSGAKGKRYSLPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+  A++I ++K  LN I     G+ +  +EK  DRD+ MSA EA
Sbjct: 121 MIHQPLGGARGQATDIQIQAKEIQRLKDTLNGILASQTGQDFATIEKDTDRDNFMSAEEA 180

Query: 196 CDWGVVDKVL 205
           C +G++D+V+
Sbjct: 181 CSYGLIDEVI 190


>gi|153814157|ref|ZP_01966825.1| hypothetical protein RUMTOR_00366 [Ruminococcus torques ATCC 27756]
 gi|317499957|ref|ZP_07958193.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|331087820|ref|ZP_08336745.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
           bacterium 3_1_46FAA]
 gi|145848553|gb|EDK25471.1| hypothetical protein RUMTOR_00366 [Ruminococcus torques ATCC 27756]
 gi|316898674|gb|EFV20709.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|330409515|gb|EGG88956.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
           bacterium 3_1_46FAA]
          Length = 193

 Score =  245 bits (626), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 113/190 (59%), Positives = 152/190 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLLKERI+F+  ++ D  A++I AQLLFLEA++P K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLKERIIFLGEEVNDVSASVIVAQLLFLEADDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMAIYDTMQ+IK  +ST C+G AASMG+ LL+ G+KG RFALPNA I
Sbjct: 61  QLYINSPGGSVTAGMAIYDTMQYIKCDVSTVCIGMAASMGAFLLAGGKKGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I+  A+ I++ K++LNEI   N G++ E ++   +RD+ MSA EA
Sbjct: 121 MIHQPSGGAQGQATEIQIAAEHILRTKQKLNEILAANTGQSLETIKADTERDNFMSADEA 180

Query: 196 CDWGVVDKVL 205
             +G++D+V+
Sbjct: 181 KAYGLIDEVI 190


>gi|5174419|ref|NP_006003.1| putative ATP-dependent Clp protease proteolytic subunit,
           mitochondrial precursor [Homo sapiens]
 gi|3023512|sp|Q16740|CLPP_HUMAN RecName: Full=Putative ATP-dependent Clp protease proteolytic
           subunit, mitochondrial; AltName: Full=Endopeptidase Clp;
           Flags: Precursor
 gi|62738031|pdb|1TG6|A Chain A, Crystallography And Mutagenesis Point To An Essential Role
           For The N-Terminus Of Human Mitochondrial Clpp
 gi|62738032|pdb|1TG6|B Chain B, Crystallography And Mutagenesis Point To An Essential Role
           For The N-Terminus Of Human Mitochondrial Clpp
 gi|62738033|pdb|1TG6|C Chain C, Crystallography And Mutagenesis Point To An Essential Role
           For The N-Terminus Of Human Mitochondrial Clpp
 gi|62738034|pdb|1TG6|D Chain D, Crystallography And Mutagenesis Point To An Essential Role
           For The N-Terminus Of Human Mitochondrial Clpp
 gi|62738035|pdb|1TG6|E Chain E, Crystallography And Mutagenesis Point To An Essential Role
           For The N-Terminus Of Human Mitochondrial Clpp
 gi|62738036|pdb|1TG6|F Chain F, Crystallography And Mutagenesis Point To An Essential Role
           For The N-Terminus Of Human Mitochondrial Clpp
 gi|62738037|pdb|1TG6|G Chain G, Crystallography And Mutagenesis Point To An Essential Role
           For The N-Terminus Of Human Mitochondrial Clpp
 gi|963048|emb|CAA90705.1| CLPP [Homo sapiens]
 gi|12804197|gb|AAH02956.1| ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit
           homolog (E. coli) [Homo sapiens]
 gi|119589509|gb|EAW69103.1| ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit
           homolog (E. coli) [Homo sapiens]
 gi|123998295|gb|ABM86749.1| ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit
           homolog (E. coli) [synthetic construct]
 gi|157929068|gb|ABW03819.1| ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit
           homolog (E. coli) [synthetic construct]
          Length = 277

 Score =  245 bits (626), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 115/191 (60%), Positives = 156/191 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           L L+P+VVEQT RGER+YDIYSRLL+ERIV V G I+D +A+L+ AQLLFL++E+ +K I
Sbjct: 56  LPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPI 115

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG+AIYDTMQ+I  PI T+C+GQAASMGSLLL+AG  GMR +LPN+RI
Sbjct: 116 HMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRI 175

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+DI   A++I+K+K++L  IY K+  ++ + +E  ++RD  MS  EA
Sbjct: 176 MIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEA 235

Query: 196 CDWGVVDKVLM 206
            ++G++DKVL+
Sbjct: 236 QEFGILDKVLV 246


>gi|239828281|ref|YP_002950905.1| ATP-dependent Clp protease proteolytic subunit [Geobacillus sp.
           WCH70]
 gi|259585956|sp|C5D7M9|CLPP_GEOSW RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|239808574|gb|ACS25639.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus
           sp. WCH70]
          Length = 196

 Score =  245 bits (626), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 112/195 (57%), Positives = 155/195 (79%), Gaps = 1/195 (0%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT+RGER+YDIYSRLLK+RI+ +   I+D +A  I +QLLFL AE+P+K+I
Sbjct: 1   MNLIPTVIEQTSRGERAYDIYSRLLKDRIIILGSPIDDQVANSIVSQLLFLAAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG +TAG+AIYDTMQFIKP +ST C+G AASMG+ LL+AG KG RFALPN+ I
Sbjct: 61  SLYINSPGGSITAGLAIYDTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN I  +N G+  E +E+  DRD+ M+A +A
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILFLRDKLNRILAENTGQPVEVIERDTDRDNFMTAQKA 180

Query: 196 CDWGVVDKVLMSRID 210
            ++G++D+VL +RID
Sbjct: 181 QEYGIIDRVL-TRID 194


>gi|108804374|ref|YP_644311.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rubrobacter
           xylanophilus DSM 9941]
 gi|116243164|sp|Q1AVS9|CLPP_RUBXD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|108765617|gb|ABG04499.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rubrobacter
           xylanophilus DSM 9941]
          Length = 200

 Score =  245 bits (626), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 110/190 (57%), Positives = 154/190 (81%), Gaps = 1/190 (0%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G++P V+EQ+ RGER+ DIYSRLLK+RI+F+   ++D +A  I AQLL LE+E+P+++I+
Sbjct: 8   GVIPYVIEQSPRGERAMDIYSRLLKDRIIFLGTPVDDQVANAIMAQLLHLESEDPEQDIN 67

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG V+AG+AIYDTMQF+KP I T  +G AASMG+ LL+AG KG RFALPN RIL
Sbjct: 68  LYINSPGGSVSAGLAIYDTMQFVKPDIVTTALGMAASMGAFLLAAGTKGKRFALPNTRIL 127

Query: 137 LHQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           LHQP+ GG +GQASD+E HA+++++ KRRLNEI  ++ G+ Y+++E+  DRD IM A EA
Sbjct: 128 LHQPAVGGLAGQASDVEIHARELIRTKRRLNEILSEHTGQPYDKIERDTDRDFIMGAEEA 187

Query: 196 CDWGVVDKVL 205
            ++G++D ++
Sbjct: 188 IEYGLIDDIV 197


>gi|291288695|ref|YP_003505511.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290885855|gb|ADD69555.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 195

 Score =  245 bits (626), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 110/190 (57%), Positives = 152/190 (80%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP V+EQT RGERSYDIYSRLLK+RI+F+  Q+E  +A  I AQ+LFLE+++P K+I LY
Sbjct: 5   VPYVIEQTGRGERSYDIYSRLLKDRIIFLGSQVESGIANSIVAQMLFLESDDPDKDIHLY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG V+ G+AI+DTM++IKP +ST C+GQAASM ++LL+AG KG R+A+PNAR+++H
Sbjct: 65  INSPGGSVSDGLAIFDTMKYIKPDVSTICIGQAASMAAVLLAAGTKGKRYAVPNARVMIH 124

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           Q  GG  GQA+DIE  A++I++IK+ LN+I     GK+YE++EK  DRD+ MSA EA  +
Sbjct: 125 QVMGGAQGQAADIEIQAKEILRIKKILNDILTDATGKSYEKIEKDSDRDYFMSAPEAKAY 184

Query: 199 GVVDKVLMSR 208
           G++D V+ +R
Sbjct: 185 GIIDDVITNR 194


>gi|219113871|ref|XP_002186519.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583369|gb|ACI65989.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 223

 Score =  245 bits (626), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 110/190 (57%), Positives = 150/190 (78%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP+V+E    GERS+DIYSRLL+ERI+ V G++ DHMA+L+ AQLLFLEAE+P+K + +Y
Sbjct: 19  VPIVLESGALGERSFDIYSRLLRERIICVHGEVSDHMASLVTAQLLFLEAEHPEKPVYMY 78

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG+VTAGMA+YDTMQ+I+P + T CMGQAASMGSLLL+ G  G RFALPN+RI+LH
Sbjct: 79  INSPGGLVTAGMAMYDTMQYIRPDVHTICMGQAASMGSLLLAGGTPGCRFALPNSRIMLH 138

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  G A+DI+  A++I++ +  LN +YV + G+   E+E+ +DRD+ +   +A  +
Sbjct: 139 QPSGGAQGMAADIDIQAREILRTRANLNRLYVHHTGQELSEIERVMDRDYFLDVHQAKKF 198

Query: 199 GVVDKVLMSR 208
           GV+D+VL  R
Sbjct: 199 GVIDQVLDKR 208


>gi|114674891|ref|XP_512312.2| PREDICTED: endopeptidase Clp [Pan troglodytes]
          Length = 277

 Score =  245 bits (626), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 115/191 (60%), Positives = 156/191 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           L L+P+VVEQT RGER+YDIYSRLL+ERIV V G I+D +A+L+ AQLLFL++E+ +K I
Sbjct: 56  LPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPI 115

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG+AIYDTMQ+I  PI T+C+GQAASMGSLLL+AG  GMR +LPN+RI
Sbjct: 116 HMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRI 175

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+DI   A++I+K+K++L  IY K+  ++ + +E  ++RD  MS  EA
Sbjct: 176 MIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEA 235

Query: 196 CDWGVVDKVLM 206
            ++G++DKVL+
Sbjct: 236 QEFGILDKVLV 246


>gi|56269518|gb|AAH87510.1| LOC496087 protein [Xenopus laevis]
          Length = 243

 Score =  245 bits (626), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 112/196 (57%), Positives = 157/196 (80%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
           S  +   L+P+VVEQT RGER+YDIYSRLL+ERI+ V G I+D +++++ AQLLFL++E+
Sbjct: 23  SPPILSPLIPIVVEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSES 82

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
            +K I +YINSPGG VTAG+AIYDTMQ+I  PI T+C+GQAASMGSLLL+AG  GMR +L
Sbjct: 83  NKKPIHMYINSPGGSVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSSGMRHSL 142

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           PN+RI++HQPSGG  GQA+DI   A++I+K+K+++NEIY K+  +    +E  ++RD  M
Sbjct: 143 PNSRIMIHQPSGGARGQATDIAIQAEEILKLKKQINEIYAKHTRQPLSVIESVMERDRYM 202

Query: 191 SASEACDWGVVDKVLM 206
           S +EA ++G++DKVL+
Sbjct: 203 SPTEAQEFGILDKVLV 218


>gi|33519711|ref|NP_878543.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Blochmannia floridanus]
 gi|60389741|sp|Q7VRH1|CLPP_BLOFL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|33504056|emb|CAD83317.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Blochmannia floridanus]
          Length = 209

 Score =  245 bits (626), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 109/194 (56%), Positives = 153/194 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++P VV+QT+RG+R+YDI+S LLKERI+FV G+IE+ MA LI AQ++FLE+E+P K+I
Sbjct: 16  VSMIPTVVKQTSRGDRAYDIFSLLLKERIIFVIGKIENFMANLIVAQIMFLESEDPVKDI 75

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGM+IYD MQF+KP IST+C+GQAASMG+ LL+AG  G RF LPN+R+
Sbjct: 76  HLYINSPGGEVTAGMSIYDIMQFVKPNISTYCIGQAASMGAFLLAAGTTGKRFCLPNSRV 135

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP G   GQA+DI  HA +I+K+K  +N++  K+ GK+ + + + ++RD  +SA E+
Sbjct: 136 MIHQPLGSLHGQATDIAIHATEILKVKENINKLMAKHTGKSIDVIRQDMERDCFLSADES 195

Query: 196 CDWGVVDKVLMSRI 209
             +G+VD VL  RI
Sbjct: 196 VKYGLVDSVLSKRI 209


>gi|15606541|ref|NP_213921.1| ATP-dependent Clp protease proteolytic subunit [Aquifex aeolicus
           VF5]
 gi|6225158|sp|O67357|CLPP_AQUAE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|2983755|gb|AAC07315.1| ATP-dependent Clp protease proteolytic subunit [Aquifex aeolicus
           VF5]
          Length = 201

 Score =  245 bits (626), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 112/199 (56%), Positives = 156/199 (78%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           + +++   LVP+V+EQT RGER+YDIYSRLL++RIV +   I+DH+A LI AQLLFLE++
Sbjct: 2   NHKEILDQLVPIVIEQTPRGERAYDIYSRLLQDRIVLLGSPIDDHVANLIVAQLLFLESQ 61

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           +P K+I LYINSPGG VTAG+AIYDTMQ+IKP + T CMGQAASMG++LL+AG  G R+A
Sbjct: 62  DPDKDIYLYINSPGGSVTAGLAIYDTMQYIKPDVVTICMGQAASMGAILLAAGAPGKRYA 121

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LP++RI++HQP GG  GQA+DI  HA++I +IK  L +I  K+ G+  +++   ++RD+ 
Sbjct: 122 LPHSRIMIHQPLGGIQGQATDIIIHAEEIKRIKEMLIDILAKHTGQPKDKIANDIERDYF 181

Query: 190 MSASEACDWGVVDKVLMSR 208
           MS  EA D+G++DKV+  R
Sbjct: 182 MSPYEAKDYGLIDKVIEKR 200


>gi|307265821|ref|ZP_07547372.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919216|gb|EFN49439.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 195

 Score =  245 bits (625), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 111/193 (57%), Positives = 152/193 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQTNRGERSYDI+SRLLK+RIVF+  +I D  A+L+ AQLLFLEAE+P K+I
Sbjct: 1   MSLVPIVVEQTNRGERSYDIFSRLLKDRIVFLGEEINDTTASLVIAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +TAG AIYDTMQ+IKP + T C+G AASM + LL+AG KG RFALPN+ I
Sbjct: 61  WLYINSPGGSITAGFAIYDTMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+ HA+ I+K++ +L++I  +N G+  E+++   +RD  M A +A
Sbjct: 121 MIHQPLGGMQGQATDIKIHAERILKLRDKLDKILAENTGQPIEKIKADTERDFFMDAEDA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D+VL+ +
Sbjct: 181 KAYGIIDEVLVRK 193


>gi|157164595|ref|YP_001465991.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           concisus 13826]
 gi|112801723|gb|EAT99067.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           concisus 13826]
          Length = 196

 Score =  245 bits (625), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 114/187 (60%), Positives = 150/187 (80%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP+VVE+T+RGERSYDIYSRLLK+RIV ++G+IED MA  I AQLLFLEAE+P K+I LY
Sbjct: 5   VPVVVERTSRGERSYDIYSRLLKDRIVMLSGEIEDGMAASIVAQLLFLEAEDPDKDIYLY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGV+T+G +IYDTM +IKP + T C+GQAASMG+ LLS G  G R+ALPN+RI++H
Sbjct: 65  INSPGGVITSGFSIYDTMNYIKPDVCTICIGQAASMGAFLLSCGAPGKRYALPNSRIMIH 124

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA+DIE  A++I+++K  LN I  KN G+   ++ K  +RD  MS++EA ++
Sbjct: 125 QPLGGARGQATDIEIQAREILRLKEILNGILAKNTGQKLSKIVKDTERDFFMSSAEAKEY 184

Query: 199 GVVDKVL 205
           G+VDK+L
Sbjct: 185 GLVDKIL 191


>gi|240146206|ref|ZP_04744807.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Roseburia
           intestinalis L1-82]
 gi|257201662|gb|EEU99946.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Roseburia
           intestinalis L1-82]
 gi|291536689|emb|CBL09801.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Roseburia
           intestinalis M50/1]
 gi|291537973|emb|CBL11084.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Roseburia
           intestinalis XB6B4]
          Length = 193

 Score =  245 bits (625), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 113/193 (58%), Positives = 151/193 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGER+YDIYSRLLK+RI+F+  ++ +  A+L  AQLLFLE+E+P K+I
Sbjct: 1   MSLVPYVIEQTSRGERNYDIYSRLLKDRIIFLGEEVNETTASLTVAQLLFLESEDPGKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG+VTAG+AIYDTMQ+IK  +ST C+G AASMG+ LLS G KG R ALPNA I
Sbjct: 61  QLYINSPGGMVTAGLAIYDTMQYIKCDVSTICIGLAASMGAFLLSGGTKGKRLALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I+  A++I+K K+RLNEI   N GK Y+ +    +RD+ MSA EA
Sbjct: 121 MIHQPSGGAKGQATEIQIAAENILKTKKRLNEILAANTGKPYDVIAADTERDYYMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D V+ +R
Sbjct: 181 KAYGLIDDVITNR 193


>gi|148223587|ref|NP_001088816.1| ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit
           homolog [Xenopus laevis]
 gi|76779451|gb|AAI06237.1| LOC496087 protein [Xenopus laevis]
          Length = 247

 Score =  245 bits (625), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 112/196 (57%), Positives = 157/196 (80%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
           S  +   L+P+VVEQT RGER+YDIYSRLL+ERI+ V G I+D +++++ AQLLFL++E+
Sbjct: 27  SPPILSPLIPIVVEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSES 86

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
            +K I +YINSPGG VTAG+AIYDTMQ+I  PI T+C+GQAASMGSLLL+AG  GMR +L
Sbjct: 87  NKKPIHMYINSPGGSVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSSGMRHSL 146

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           PN+RI++HQPSGG  GQA+DI   A++I+K+K+++NEIY K+  +    +E  ++RD  M
Sbjct: 147 PNSRIMIHQPSGGARGQATDIAIQAEEILKLKKQINEIYAKHTRQPLSVIESVMERDRYM 206

Query: 191 SASEACDWGVVDKVLM 206
           S +EA ++G++DKVL+
Sbjct: 207 SPTEAQEFGILDKVLV 222


>gi|223040072|ref|ZP_03610353.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           rectus RM3267]
 gi|222878658|gb|EEF13758.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           rectus RM3267]
          Length = 196

 Score =  245 bits (625), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 109/187 (58%), Positives = 152/187 (81%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+E+T++GERSYDIYSRLLK+RI+ ++G+IED +A+ I AQ+LFLEAE+P K+I LY
Sbjct: 5   IPYVIERTSKGERSYDIYSRLLKDRIIMLSGEIEDGIASAIVAQMLFLEAEDPDKDIYLY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGV+T+G +IYDTM +IKP + T C+GQAASMG+ LLS G +G R+ALPN+RI++H
Sbjct: 65  INSPGGVITSGFSIYDTMNYIKPDVCTICIGQAASMGAFLLSCGAQGKRYALPNSRIMIH 124

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA+DIE  A++I+++K  LN I  KN G+   +++K  DRD  MS++EA ++
Sbjct: 125 QPLGGARGQATDIEIQAKEILRMKEILNAILAKNTGQKLAKIQKDTDRDFFMSSAEAKEY 184

Query: 199 GVVDKVL 205
           G++DKVL
Sbjct: 185 GLIDKVL 191


>gi|226489629|emb|CAX74965.1| ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit
           homolog [Schistosoma japonicum]
          Length = 253

 Score =  245 bits (625), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 110/190 (57%), Positives = 156/190 (82%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+V+++T  GER+YDIYSRLLK+RI+ + G I D +A L+ AQLL+L++E+ +  I
Sbjct: 46  MSLVPIVLDKTTHGERAYDIYSRLLKDRIICLMGSISDEVAGLVVAQLLYLQSEDKKIPI 105

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG+AIYDTMQFIKPP++T+C+GQA+SMGSLLL+AG  G+RFALP++RI
Sbjct: 106 HIYINSPGGVVTAGLAIYDTMQFIKPPVATWCVGQASSMGSLLLAAGAPGLRFALPHSRI 165

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSG   GQASDI+ HA++I+K++  +N IY ++  ++ E +EK +DRD+ M+A EA
Sbjct: 166 MVHQPSGSAHGQASDIKIHAEEIIKMRNIINTIYERHTKQSQEVIEKWMDRDYFMTAEEA 225

Query: 196 CDWGVVDKVL 205
             +G+VD VL
Sbjct: 226 VSFGIVDMVL 235


>gi|8393156|ref|NP_059089.1| putative ATP-dependent Clp protease proteolytic subunit,
           mitochondrial precursor [Mus musculus]
 gi|5921799|sp|O88696|CLPP_MOUSE RecName: Full=Putative ATP-dependent Clp protease proteolytic
           subunit, mitochondrial; AltName: Full=Endopeptidase Clp;
           Flags: Precursor
 gi|3559935|emb|CAA06443.1| ClpP protease [Mus musculus]
 gi|4454289|emb|CAA09966.1| ClpP protease [Mus musculus]
 gi|12805083|gb|AAH01998.1| Caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog
           (E. coli) [Mus musculus]
 gi|12835038|dbj|BAB23132.1| unnamed protein product [Mus musculus]
 gi|74207567|dbj|BAE40033.1| unnamed protein product [Mus musculus]
 gi|74217075|dbj|BAE26636.1| unnamed protein product [Mus musculus]
 gi|148706268|gb|EDL38215.1| caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog
           (E. coli) [Mus musculus]
          Length = 272

 Score =  245 bits (625), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 114/189 (60%), Positives = 155/189 (82%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P+VVEQT RGER+YDIYSRLL+ERIV V G I+D +A+L+ AQLLFL++E+ +K I +
Sbjct: 54  LIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHM 113

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVTAG+AIYDTMQ+I  PI T+C+GQAASMGSLLL+AG  GMR +LPN+RI++
Sbjct: 114 YINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMI 173

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQA+DI   A++I+K+K++L  IY K+  ++ + +E  ++RD  MS  EA +
Sbjct: 174 HQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQE 233

Query: 198 WGVVDKVLM 206
           +G++DKVL+
Sbjct: 234 FGILDKVLV 242


>gi|326427885|gb|EGD73455.1| ATP-dependent Clp protease proteolytic subunit [Salpingoeca sp.
           ATCC 50818]
          Length = 267

 Score =  244 bits (624), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 108/191 (56%), Positives = 158/191 (82%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+V+EQT+RGER+YDI+SRLL+ERIV + G + D +++LI AQLL+LE+ENP++ I +
Sbjct: 59  LVPIVIEQTHRGERAYDIFSRLLRERIVCLMGPVNDELSSLITAQLLYLESENPEETIHM 118

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+ IYDTMQ++KP I+T C+GQA SMGSLLL+AG KG R+ALP++RI++
Sbjct: 119 YINSPGGSVTAGLGIYDTMQYVKPKIATLCVGQACSMGSLLLTAGAKGHRYALPHSRIMV 178

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQA+DI+  A++I+K+K  + +IYV++ G+ +  +  +L+RD  +SA EA +
Sbjct: 179 HQPSGGAYGQATDIQIQAEEILKLKNTICDIYVQHTGQPHSVIYDSLERDKFLSAGEASE 238

Query: 198 WGVVDKVLMSR 208
           +G++D+V+ +R
Sbjct: 239 FGLIDEVVATR 249


>gi|226489631|emb|CAX74966.1| ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit
           homolog [Schistosoma japonicum]
          Length = 249

 Score =  244 bits (624), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 110/190 (57%), Positives = 156/190 (82%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+V+++T  GER+YDIYSRLLK+RI+ + G I D +A L+ AQLL+L++E+ +  I
Sbjct: 42  MSLVPIVLDKTTHGERAYDIYSRLLKDRIICLMGAISDEVAGLVVAQLLYLQSEDKKIPI 101

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG+AIYDTMQFIKPP++T+C+GQA+SMGSLLL+AG  G+RFALP++RI
Sbjct: 102 HIYINSPGGVVTAGLAIYDTMQFIKPPVATWCVGQASSMGSLLLAAGAPGLRFALPHSRI 161

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSG   GQASDI+ HA++I+K++  +N IY ++  ++ E +EK +DRD+ M+A EA
Sbjct: 162 MVHQPSGSAHGQASDIKIHAEEIIKMRNIINTIYERHTKQSQEVIEKWMDRDYFMTAEEA 221

Query: 196 CDWGVVDKVL 205
             +G+VD VL
Sbjct: 222 VSFGIVDMVL 231


>gi|300681014|sp|A8WPG6|CLPP1_CAEBR RecName: Full=ATP-dependent Clp protease proteolytic subunit 1,
           mitochondrial; Flags: Precursor
 gi|309366007|emb|CAP22373.2| CBR-CLPP-1 protein [Caenorhabditis briggsae AF16]
          Length = 219

 Score =  244 bits (624), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 111/186 (59%), Positives = 150/186 (80%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V++   +GER+YDIYSRLL++RIV +   ++D MA+ + AQLLFL++E+ +K I +Y
Sbjct: 24  IPFVIDNEGKGERTYDIYSRLLRDRIVCLMTPVDDFMASALIAQLLFLQSESSKKPIHMY 83

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDTMQ I  P++T+ +GQA+SMGSLLL+AGEKGMR ALPNARI++H
Sbjct: 84  INSPGGSVTAGLAIYDTMQMISAPVATWVIGQASSMGSLLLAAGEKGMRSALPNARIMVH 143

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  G  SDI   A++I ++K+RLNEIYV + G +Y+E+E+TLDRD  MSA EA  +
Sbjct: 144 QPSGGAQGTCSDIVIRAEEITRLKKRLNEIYVHHTGISYDEIERTLDRDRFMSAQEALKF 203

Query: 199 GVVDKV 204
           G+VDK+
Sbjct: 204 GLVDKI 209


>gi|293349601|ref|XP_001055676.2| PREDICTED: caseinolytic peptidase, ATP-dependent, proteolytic
           subunit-like [Rattus norvegicus]
 gi|293362033|ref|XP_217313.4| PREDICTED: caseinolytic peptidase, ATP-dependent, proteolytic
           subunit-like [Rattus norvegicus]
 gi|149028159|gb|EDL83597.1| similar to Putative ATP-dependent Clp protease proteolytic subunit,
           mitochondrial precursor (Endopeptidase Clp) [Rattus
           norvegicus]
          Length = 333

 Score =  244 bits (624), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 115/189 (60%), Positives = 155/189 (82%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P+VVEQT RGER+YDIYSRLL+ERIV V G I+D +A+L+ AQLLFL++E+ +K I +
Sbjct: 115 LIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHM 174

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVTAG+AIYDTMQ+I  PI T+C+GQAASMGSLLL+AG  GMR +LPN+RI++
Sbjct: 175 YINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMI 234

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQA+DI   A++I+K+KR+L  IY K+  ++ + +E  ++RD  MS  EA +
Sbjct: 235 HQPSGGARGQATDIAIQAEEIMKLKRQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQE 294

Query: 198 WGVVDKVLM 206
           +G++DKVL+
Sbjct: 295 FGILDKVLV 303


>gi|331090536|ref|ZP_08339389.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
           bacterium 2_1_46FAA]
 gi|330405879|gb|EGG85407.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
           bacterium 2_1_46FAA]
          Length = 193

 Score =  244 bits (624), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 112/193 (58%), Positives = 155/193 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLLK+RI+F+  ++ D  A++I AQLL LEAE+P+K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLKDRIIFLGEEVTDVSASIIVAQLLHLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG V+AG+AIYDTMQ+IK  +ST C+G AASMG+ LL+ G KG RFALPNA I
Sbjct: 61  QLYINSPGGSVSAGLAIYDTMQYIKCDVSTTCIGMAASMGAFLLAGGAKGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++I+  A+ I+K +++LNEI  +  GK++E++    +RD+ MSA EA
Sbjct: 121 MIHQPLGGAQGQATEIQIAAEHILKTRQKLNEILAERTGKSFEQISADTERDNFMSAKEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++DKV++SR
Sbjct: 181 EEYGLIDKVVVSR 193


>gi|288941151|ref|YP_003443391.1| ATP-dependent Clp protease proteolytic subunit ClpP [Allochromatium
           vinosum DSM 180]
 gi|288896523|gb|ADC62359.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Allochromatium vinosum DSM 180]
          Length = 215

 Score =  244 bits (624), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 119/208 (57%), Positives = 161/208 (77%)

Query: 7   AKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
           ++ D +   LGLVP+VVEQT RGERS+DIYSRLLKER++F+ G +EDHMA L+ AQLLFL
Sbjct: 6   SRTDWQPQGLGLVPIVVEQTARGERSFDIYSRLLKERVIFLVGPVEDHMANLVVAQLLFL 65

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E+ENP K+I LYINSPGG VTAG+AIYDTM+FI+P +ST C+GQAASMG+LLL+ G  G 
Sbjct: 66  ESENPDKDIHLYINSPGGSVTAGLAIYDTMRFIRPDVSTMCIGQAASMGALLLAGGAAGK 125

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           RF LP++R+++HQP GGF GQA+DIE HA++I+ I+ RLN+I   + G+  E++ +  DR
Sbjct: 126 RFCLPHSRMMIHQPLGGFQGQATDIEIHAREILYIRERLNQILSHHTGQPIEKIAEDTDR 185

Query: 187 DHIMSASEACDWGVVDKVLMSRIDIEEK 214
           D  M    A ++G++D+V+  R  +  K
Sbjct: 186 DRFMDGETAREYGLIDQVITERGPVASK 213


>gi|303239032|ref|ZP_07325562.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acetivibrio
           cellulolyticus CD2]
 gi|302593370|gb|EFL63088.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acetivibrio
           cellulolyticus CD2]
          Length = 194

 Score =  244 bits (624), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 112/193 (58%), Positives = 150/193 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQTNRGERSYDI+SRLLK+RI+ ++ ++ D  A+L+ AQ+LFLEAE+P K+I
Sbjct: 1   MSLVPVVVEQTNRGERSYDIFSRLLKDRIILLSDEVNDVTASLVVAQMLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG V+AG AIYDTMQ++KP +ST C+G AASMG+ LL+AG KG RFALPN+ I
Sbjct: 61  QLYINSPGGSVSAGFAIYDTMQYVKPDVSTICIGMAASMGAFLLNAGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++I+ HA+ I+K + RLN I  +  G+  E++E   +RD  MSA EA
Sbjct: 121 MIHQPLGGTRGQATEIKIHAEHILKTRDRLNRILSEKTGQPLEKIEADTERDFFMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD V+  R
Sbjct: 181 KAYGLVDDVMERR 193


>gi|74188717|dbj|BAE28093.1| unnamed protein product [Mus musculus]
          Length = 269

 Score =  244 bits (624), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 114/189 (60%), Positives = 155/189 (82%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P+VVEQT RGER+YDIYSRLL+ERIV V G I+D +A+L+ AQLLFL++E+ +K I +
Sbjct: 51  LIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHM 110

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVTAG+AIYDTMQ+I  PI T+C+GQAASMGSLLL+AG  GMR +LPN+RI++
Sbjct: 111 YINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMI 170

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQA+DI   A++I+K+K++L  IY K+  ++ + +E  ++RD  MS  EA +
Sbjct: 171 HQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQE 230

Query: 198 WGVVDKVLM 206
           +G++DKVL+
Sbjct: 231 FGILDKVLV 239


>gi|322384476|ref|ZP_08058158.1| ATP-dependent Clp protease proteolytic subunit-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321150686|gb|EFX44161.1| ATP-dependent Clp protease proteolytic subunit-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 193

 Score =  244 bits (624), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 112/190 (58%), Positives = 148/190 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +PMVVE   RGERSYDIYSRLLK+RIVF+  Q+ D +A  I AQLLFL A++P K+I
Sbjct: 1   MSFIPMVVEPDARGERSYDIYSRLLKDRIVFLGTQVNDAVANSIIAQLLFLAAQDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG +TAGMAIYDTMQ+IKP +ST C+G AASMG+ LL+AG  G R+ALPN+ +
Sbjct: 61  SLYINSPGGSITAGMAIYDTMQYIKPDVSTICVGMAASMGAFLLNAGAVGKRYALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DIE  A+ I+K++  LN I  +  G+  E++E+  DRD+ MSASEA
Sbjct: 121 MIHQPLGGAEGQATDIEIRAKRIIKMRENLNRILSERTGQPLEKIERDTDRDYFMSASEA 180

Query: 196 CDWGVVDKVL 205
            ++G++DKV+
Sbjct: 181 KEYGLIDKVI 190


>gi|311248480|ref|XP_003123161.1| PREDICTED: putative ATP-dependent Clp protease proteolytic subunit,
           mitochondrial-like [Sus scrofa]
          Length = 259

 Score =  244 bits (624), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 114/191 (59%), Positives = 156/191 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           L L+P+VVEQT RGER+YDIYSRLL+ERIV V G I+D +A+L+ AQLLFL++E+ +K I
Sbjct: 52  LPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPI 111

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVT+G+AIYDTMQ+I  PI T+C+GQAASMGSLLL+AG  GMR +LPN+RI
Sbjct: 112 HMYINSPGGVVTSGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRI 171

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+DI   A++I+K+K++L  IY K+  ++ + +E  ++RD  MS  EA
Sbjct: 172 MIHQPSGGARGQATDIAIQAEEIMKLKKQLYSIYAKHTKQSLQVIESAMERDRYMSPMEA 231

Query: 196 CDWGVVDKVLM 206
            ++G++DKVL+
Sbjct: 232 QEFGILDKVLV 242


>gi|289422712|ref|ZP_06424552.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Peptostreptococcus anaerobius 653-L]
 gi|289156891|gb|EFD05516.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Peptostreptococcus anaerobius 653-L]
          Length = 194

 Score =  244 bits (624), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 110/194 (56%), Positives = 150/194 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP VVEQ  RGERSYDIYSRLLK+RI+F+  ++ D  A+L+ AQ+LFLEA++P K+I
Sbjct: 1   MALVPYVVEQDGRGERSYDIYSRLLKDRIIFLGDEVNDQTASLVVAQMLFLEADDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMAIYDTMQ+IK  +ST C+G AASMG+ LL+AG KG R+ALPN+ +
Sbjct: 61  HLYINSPGGSVTAGMAIYDTMQYIKADVSTICVGMAASMGAFLLAAGAKGKRYALPNSTV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DIE H + ++ IK +LN+I  +  G+  E V+   +RD+ M+A EA
Sbjct: 121 MIHQPLGGTRGQATDIEIHTKYLLSIKEKLNKILAERTGQDLETVKANTERDNFMTADEA 180

Query: 196 CDWGVVDKVLMSRI 209
            D+G++D+V+  R+
Sbjct: 181 RDFGLIDEVIAGRV 194


>gi|260584984|ref|ZP_05852727.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Granulicatella elegans ATCC 700633]
 gi|260157290|gb|EEW92363.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Granulicatella elegans ATCC 700633]
          Length = 197

 Score =  244 bits (623), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 111/197 (56%), Positives = 150/197 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQ++RGER+YDIYSRLLK+RI+ V+G I D MA  I AQLLFL+A++P+K+I
Sbjct: 1   MNLIPTVIEQSSRGERAYDIYSRLLKDRIIMVSGPIHDDMANAIIAQLLFLDAQDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG VTAG+AIYDTM FIK  + T  MG AASMGS LL+AG KG R+ALPNA I
Sbjct: 61  YMYINSPGGSVTAGLAIYDTMNFIKADVQTIAMGLAASMGSFLLTAGTKGKRYALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQP GG  GQA++IE  A+ I+K + RLN I  K  G+  + +EK  DRD+ M+A EA
Sbjct: 121 LIHQPLGGAQGQATEIEIAARQILKTRERLNAILAKQTGQKLKTIEKDTDRDNYMTAQEA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G++D ++ +  D++
Sbjct: 181 LEYGLIDAIMTNSKDLQ 197


>gi|167038050|ref|YP_001665628.1| ATP-dependent Clp protease proteolytic subunit [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167040915|ref|YP_001663900.1| ATP-dependent Clp protease proteolytic subunit [Thermoanaerobacter
           sp. X514]
 gi|256752437|ref|ZP_05493296.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914951|ref|ZP_07132267.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter sp. X561]
 gi|307723815|ref|YP_003903566.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter sp. X513]
 gi|320116459|ref|YP_004186618.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|226706551|sp|B0KBA4|CLPP_THEP3 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706552|sp|B0K533|CLPP_THEPX RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166855155|gb|ABY93564.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter sp. X514]
 gi|166856884|gb|ABY95292.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|256748706|gb|EEU61751.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889886|gb|EFK85032.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter sp. X561]
 gi|307580876|gb|ADN54275.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter sp. X513]
 gi|319929550|gb|ADV80235.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 195

 Score =  244 bits (623), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 111/191 (58%), Positives = 151/191 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQTNRGERSYDI+SRLLK+RIVF+  +I D  A+L+ AQLLFLEAE+P K+I
Sbjct: 1   MSLVPIVVEQTNRGERSYDIFSRLLKDRIVFLGEEINDTTASLVIAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +TAG AIYDTMQ+IKP + T C+G AASM + LL+AG KG RFALPN+ I
Sbjct: 61  WLYINSPGGSITAGFAIYDTMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+ HA+ I+K++ +L++I  +N G+  E+++   +RD  M A +A
Sbjct: 121 MIHQPLGGMQGQATDIKIHAERILKLRDKLDKILAENTGQPIEKIKADTERDFFMDAEDA 180

Query: 196 CDWGVVDKVLM 206
             +G++D+VL+
Sbjct: 181 KAYGIIDEVLI 191


>gi|154482729|ref|ZP_02025177.1| hypothetical protein EUBVEN_00406 [Eubacterium ventriosum ATCC
           27560]
 gi|149736324|gb|EDM52210.1| hypothetical protein EUBVEN_00406 [Eubacterium ventriosum ATCC
           27560]
          Length = 193

 Score =  244 bits (623), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 112/193 (58%), Positives = 152/193 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQ +RGERSYDIYSRLLK+RI+F+  +I D +A+ + AQLLFLE+E+P K+I
Sbjct: 1   MALVPYVIEQNSRGERSYDIYSRLLKDRIIFLGEEINDAVASTVVAQLLFLESEDPGKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG VTAGMAIYDTM ++K  +ST C+G AASMG+ LLS+G KG R+ALPNA +
Sbjct: 61  HMYINSPGGSVTAGMAIYDTMNYVKCDVSTTCIGMAASMGAFLLSSGAKGKRYALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++I+  A+ I+K K++LN+I   N GK  EEVEK  DRD+ +SA EA
Sbjct: 121 MIHQPLGGAQGQATEIQIAAEHILKTKKKLNQILADNAGKPVEEVEKDTDRDNWLSADEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++D+V+  R
Sbjct: 181 KEYGLIDEVIKDR 193


>gi|330722307|gb|EGH00174.1| ATP-dependent Clp protease proteolytic subunit [gamma
           proteobacterium IMCC2047]
          Length = 210

 Score =  244 bits (623), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 114/198 (57%), Positives = 156/198 (78%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
           + D+   LVPMV+EQT RGERS+DIYSRLLKER++F+ G +EDHMA L+ AQ+LFLE+EN
Sbjct: 9   NHDLISQLVPMVIEQTARGERSFDIYSRLLKERVIFLVGPVEDHMANLVVAQMLFLESEN 68

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
           P K+I LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQAASMG+LLL+ G  G RF L
Sbjct: 69  PDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDVSTLCIGQAASMGALLLAGGAAGKRFCL 128

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           P++R+++HQP GGF GQA+DIE H ++I+ I+ +LN +  K+ G+  +++    DRD+ M
Sbjct: 129 PHSRVMIHQPLGGFQGQATDIEIHTKEILTIRDKLNRVLSKHTGQDLDKIATDTDRDNFM 188

Query: 191 SASEACDWGVVDKVLMSR 208
               A ++G++D+V+ +R
Sbjct: 189 DGHAAVEYGLIDQVMENR 206


>gi|259047276|ref|ZP_05737677.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Granulicatella adiacens ATCC 49175]
 gi|259036052|gb|EEW37307.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Granulicatella adiacens ATCC 49175]
          Length = 197

 Score =  244 bits (623), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 111/192 (57%), Positives = 148/192 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQ++RGER+YDIYSRLLK+RI+ V+G I+D MA  I AQLLFL+A++P+K+I
Sbjct: 1   MNLIPTVIEQSSRGERAYDIYSRLLKDRIIMVSGPIQDDMANAIIAQLLFLDAQDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG VTAG+AIYDTM FIK  + T  MG AASMGS LL+AG KG R+ALPNA I
Sbjct: 61  YMYINSPGGSVTAGLAIYDTMNFIKADVQTIAMGLAASMGSFLLTAGAKGKRYALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQP GG  GQA++IE  A+ I+K + RLN+I  K  G+    +EK  DRD+ M+A EA
Sbjct: 121 LIHQPLGGAQGQATEIEIAARQILKTRERLNKILAKQTGQKLSRIEKDTDRDNYMTAQEA 180

Query: 196 CDWGVVDKVLMS 207
            ++G++D ++ S
Sbjct: 181 LEYGLIDAIMES 192


>gi|152977369|ref|YP_001376886.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           subsp. cytotoxis NVH 391-98]
 gi|152026121|gb|ABS23891.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cytotoxicus NVH 391-98]
          Length = 193

 Score =  244 bits (623), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 107/193 (55%), Positives = 154/193 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFLE+++P+K+I
Sbjct: 1   MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +TAGMAIYDTMQFIKP +ST C+G AASMG+ LL+AGEKG RFALPN+ +
Sbjct: 61  HLYINSPGGSITAGMAIYDTMQFIKPNVSTICIGMAASMGAFLLAAGEKGKRFALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN+I  +  G+  E +E+  DRD+ M+A +A
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILFLRDKLNKILAERTGQPLEVIERDTDRDNFMTAEKA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++D++  +R
Sbjct: 181 LEYGLIDRIFTNR 193


>gi|114051824|ref|NP_001039879.1| putative ATP-dependent Clp protease proteolytic subunit,
           mitochondrial precursor [Bos taurus]
 gi|118572228|sp|Q2KHU4|CLPP_BOVIN RecName: Full=Putative ATP-dependent Clp protease proteolytic
           subunit, mitochondrial; AltName: Full=Endopeptidase Clp;
           Flags: Precursor
 gi|86826474|gb|AAI12881.1| ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit
           homolog (E. coli) [Bos taurus]
 gi|296485755|gb|DAA27870.1| caseinolytic peptidase, ATP-dependent, proteolytic subunit
           precursor [Bos taurus]
          Length = 272

 Score =  244 bits (623), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 114/191 (59%), Positives = 156/191 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           L L+P+VVEQT RGER+YDIYSRLL+ERIV V G I+D +A+L+ AQLLFL++E+ +K I
Sbjct: 52  LPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPI 111

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVT+G+AIYDTMQ+I  PI T+C+GQAASMGSLLL+AG  GMR +LPN+RI
Sbjct: 112 HMYINSPGGVVTSGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRI 171

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+DI   A++I+K+K++L  IY K+  ++ + +E  ++RD  MS  EA
Sbjct: 172 MIHQPSGGARGQATDIAIQAEEIMKLKKQLYSIYAKHTKQSLQVIESAMERDRYMSPMEA 231

Query: 196 CDWGVVDKVLM 206
            ++G++DKVL+
Sbjct: 232 QEFGILDKVLV 242


>gi|229827570|ref|ZP_04453639.1| hypothetical protein GCWU000182_02959 [Abiotrophia defectiva ATCC
           49176]
 gi|229788208|gb|EEP24322.1| hypothetical protein GCWU000182_02959 [Abiotrophia defectiva ATCC
           49176]
          Length = 194

 Score =  244 bits (623), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 112/193 (58%), Positives = 151/193 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLL++RI+F+  ++ D  A++I AQLLFLEAE+P K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLEDRIIFLGEEVTDVSASVIIAQLLFLEAEDPSKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMAIYDTM +IK  +ST CMG AASMG+ LL+ G KG R ALPN+ I
Sbjct: 61  HLYINSPGGSVTAGMAIYDTMNYIKCDVSTICMGLAASMGAFLLAGGTKGKRLALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQASDI+  A +I+K ++RLNE+   N G+  E++E+  +RD+ M+A EA
Sbjct: 121 MIHQPSGGARGQASDIKIVADNIIKTRKRLNEMLAANTGRPLEDIERDTERDNFMTAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D+++  R
Sbjct: 181 KAYGLIDEIVTKR 193


>gi|261404070|ref|YP_003240311.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
           sp. Y412MC10]
 gi|329927993|ref|ZP_08281997.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Paenibacillus sp. HGF5]
 gi|261280533|gb|ACX62504.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
           sp. Y412MC10]
 gi|328938097|gb|EGG34494.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Paenibacillus sp. HGF5]
          Length = 198

 Score =  244 bits (623), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 110/190 (57%), Positives = 149/190 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +PMVVEQ+NRGER+YDIYSRLLK+RI+F+   + D +A  I AQ+LFL AE+P+K+I
Sbjct: 1   MSFIPMVVEQSNRGERAYDIYSRLLKDRIIFLGSDVNDVVANSIIAQMLFLSAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +TAGMAI+DTMQFIKP +ST C+G AASMG+ LL+AG KG R+ LPN+ I
Sbjct: 61  HLYINSPGGSITAGMAIFDTMQFIKPDVSTICVGMAASMGAFLLNAGAKGKRYGLPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DIE  A+ I+K++ +LN I  +  G+  E +EK  DRD+ M+A EA
Sbjct: 121 MIHQPLGGAQGQATDIEIRARRILKMRDKLNRILSERTGQPLERIEKDTDRDYFMTADEA 180

Query: 196 CDWGVVDKVL 205
            ++G++D+VL
Sbjct: 181 KEYGLIDQVL 190


>gi|313894919|ref|ZP_07828479.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312976600|gb|EFR42055.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 205

 Score =  244 bits (623), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 109/188 (57%), Positives = 155/188 (82%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VPMVVE ++RGER+YDIYSRLLKERI+F+ G I+D +A ++ AQ+LFLE+E+P K+I LY
Sbjct: 5   VPMVVENSSRGERAYDIYSRLLKERIIFLGGPIDDSVANVVVAQMLFLESEDPDKDIHLY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGVVTAG+AIYDTMQ+IKP +ST C+GQAASMGS+LL+AG KG R+ALP+ARI++H
Sbjct: 65  INSPGGVVTAGLAIYDTMQYIKPDVSTICIGQAASMGSILLTAGAKGKRYALPHARIMIH 124

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQ++DI+  A++I++++   NEI  ++ G+  +++    +RD+ MSA EA  +
Sbjct: 125 QPLGGAQGQSTDIQIQAKEILRLREVGNEILARHTGQDTDKINVDTERDNFMSAEEAKAY 184

Query: 199 GVVDKVLM 206
           G++D+V++
Sbjct: 185 GLIDEVVV 192


>gi|167628597|ref|YP_001679096.1| ATP-dependent clp protease proteolytic subunit [Heliobacterium
           modesticaldum Ice1]
 gi|167591337|gb|ABZ83085.1| ATP-dependent clp protease proteolytic subunit [Heliobacterium
           modesticaldum Ice1]
          Length = 199

 Score =  244 bits (623), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 113/188 (60%), Positives = 146/188 (77%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQTNRGER+YDIYSRLLK+RI+ +   I+D++A LI AQLLFLEAE+P K+I L
Sbjct: 4   LVPMVVEQTNRGERAYDIYSRLLKDRIIILGSAIDDNVANLIIAQLLFLEAEDPDKDIHL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +T+G AIYDTMQ I+  +ST C+G AASMG+ LL+AG KG R+A PNA I++
Sbjct: 64  YINSPGGAITSGFAIYDTMQLIRCDVSTICVGMAASMGAFLLAAGAKGKRYASPNAEIMI 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA++IE HA+ I+K + RLN+I     G+  E +E+  DRD+ MSA EA  
Sbjct: 124 HQPLGGVKGQATEIEIHARHILKTRDRLNKILADRTGQPLERIERDTDRDYFMSAEEAKA 183

Query: 198 WGVVDKVL 205
           +G++D V+
Sbjct: 184 YGIIDGVM 191


>gi|327438808|dbj|BAK15173.1| protease subunit of ATP-dependent Clp protease [Solibacillus
           silvestris StLB046]
          Length = 196

 Score =  244 bits (623), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 109/189 (57%), Positives = 148/189 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RI+ +   I+D++A  I AQLLFLEAE+P K+I
Sbjct: 1   MNLIPTVIEQTNRGERAYDIYSRLLKDRIILLGSGIDDNVANSIVAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +T+GMAIYDTM FIKP +ST C+G AASMG+ LLSAG KG R +LPNA +
Sbjct: 61  YLYINSPGGSITSGMAIYDTMNFIKPDVSTICIGMAASMGAFLLSAGAKGKRVSLPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN I  +N G+ YE + +  DRD+ MSA +A
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILHLREKLNRIMAENSGQDYETLARDTDRDNFMSAEQA 180

Query: 196 CDWGVVDKV 204
            ++G++DK+
Sbjct: 181 LEYGLIDKI 189


>gi|81428144|ref|YP_395143.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus sakei
           subsp. sakei 23K]
 gi|90101409|sp|Q38Y96|CLPP_LACSS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|78609785|emb|CAI54831.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           sakei subsp. sakei 23K]
          Length = 194

 Score =  244 bits (623), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 108/191 (56%), Positives = 151/191 (79%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQT+RGER+YDIYSRLLK+RI+ ++G++ D MA  I AQLLFL+A++  K+IS+
Sbjct: 2   LVPTVIEQTSRGERAYDIYSRLLKDRIIMLSGEVNDQMANTIIAQLLFLDAQDSDKDISI 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+AI DTM FIK  + T  MG AASM S+LLSAG KG RFALPN+ +L+
Sbjct: 62  YINSPGGSVTAGLAIMDTMNFIKSDVQTIAMGMAASMASVLLSAGTKGKRFALPNSTVLI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQ ++IE  A++I+K ++RLN+I   N G+T+E+++   DRD+ M+A EA D
Sbjct: 122 HQPLGGAQGQQTEIEIAAREILKTRKRLNQILADNSGQTFEKLQADTDRDNYMTAQEAKD 181

Query: 198 WGVVDKVLMSR 208
           +G++D +++++
Sbjct: 182 YGLIDDIMVNQ 192


>gi|253575504|ref|ZP_04852841.1| clp protease [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251845151|gb|EES73162.1| clp protease [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 198

 Score =  244 bits (622), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 111/190 (58%), Positives = 150/190 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +PMVVEQ+NRGER+YDIYSRLLK+RI+F+  Q+ D +A  I AQ+LFL+AE+P K+I
Sbjct: 1   MSYIPMVVEQSNRGERAYDIYSRLLKDRIIFLGSQVNDVVANSIIAQMLFLDAEDPTKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +TAGMAIYDTMQFIK  +ST C+G AASMG+ LL+AG  G R+ALPN+ I
Sbjct: 61  HLYINSPGGSITAGMAIYDTMQFIKADVSTICVGLAASMGAFLLNAGAPGKRYALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DIE  A+ I+K++ +LN I  +  G+  E +EK  DRD+ MSA+EA
Sbjct: 121 MIHQPLGGAEGQATDIEIRARRILKMRDKLNRILSERTGQPLERIEKDTDRDYFMSAAEA 180

Query: 196 CDWGVVDKVL 205
            ++G++D+V+
Sbjct: 181 KEYGLIDQVI 190


>gi|268529044|ref|XP_002629648.1| C. briggsae CBR-CLPP-1 protein [Caenorhabditis briggsae]
          Length = 206

 Score =  244 bits (622), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 111/186 (59%), Positives = 150/186 (80%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V++   +GER+YDIYSRLL++RIV +   ++D MA+ + AQLLFL++E+ +K I +Y
Sbjct: 11  IPFVIDNEGKGERTYDIYSRLLRDRIVCLMTPVDDFMASALIAQLLFLQSESSKKPIHMY 70

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDTMQ I  P++T+ +GQA+SMGSLLL+AGEKGMR ALPNARI++H
Sbjct: 71  INSPGGSVTAGLAIYDTMQMISAPVATWVIGQASSMGSLLLAAGEKGMRSALPNARIMVH 130

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  G  SDI   A++I ++K+RLNEIYV + G +Y+E+E+TLDRD  MSA EA  +
Sbjct: 131 QPSGGAQGTCSDIVIRAEEITRLKKRLNEIYVHHTGISYDEIERTLDRDRFMSAQEALKF 190

Query: 199 GVVDKV 204
           G+VDK+
Sbjct: 191 GLVDKI 196


>gi|315644534|ref|ZP_07897666.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
           vortex V453]
 gi|315280041|gb|EFU43338.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
           vortex V453]
          Length = 198

 Score =  244 bits (622), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 110/190 (57%), Positives = 148/190 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +PMVVEQ+NRGER+YDIYSRLLK+RI+F+   + D +A  I AQ+LFL AE+P+K+I
Sbjct: 1   MSFIPMVVEQSNRGERAYDIYSRLLKDRIIFLGSDVNDVVANSIIAQMLFLSAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +TAGMAI+DTMQFIKP +ST C+G AASMG+ LL+AG KG R+ LPN+ I
Sbjct: 61  HLYINSPGGSITAGMAIFDTMQFIKPDVSTICVGMAASMGAFLLNAGAKGKRYGLPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DIE  A+ I+K++ +LN I     G+  E +EK  DRD+ M+A EA
Sbjct: 121 MIHQPLGGAQGQATDIEIRARRILKMRDKLNRILSDRTGQPLERIEKDTDRDYFMTADEA 180

Query: 196 CDWGVVDKVL 205
            ++G++D+VL
Sbjct: 181 KEYGLIDQVL 190


>gi|182414555|ref|YP_001819621.1| endopeptidase Clp [Opitutus terrae PB90-1]
 gi|177841769|gb|ACB76021.1| Endopeptidase Clp [Opitutus terrae PB90-1]
          Length = 206

 Score =  244 bits (622), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 113/189 (59%), Positives = 150/189 (79%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP+V+E T RGERS DIYSRLLK+RI+F+   I+D +A L+ AQ+ FL+ E+P+K+I LY
Sbjct: 5   VPIVLENTGRGERSMDIYSRLLKDRIIFIGSPIDDTVANLVIAQMFFLQMEDPKKDIQLY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGVVT GMAIYDTM F++  I T+C+G AASM ++LLSAG KG RFALPN+R+++H
Sbjct: 65  INSPGGVVTGGMAIYDTMNFLQCDIVTYCVGMAASMSTVLLSAGTKGKRFALPNSRVMIH 124

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  GQA+DI   A++I++ ++ LNE+  K+ GKT E+VEK  DRD+ MSA EA D+
Sbjct: 125 QPSGGAGGQAADIAIAAKEILRWRKTLNEVIAKHTGKTPEQVEKDSDRDYYMSAQEAKDY 184

Query: 199 GVVDKVLMS 207
           G+VD V+ S
Sbjct: 185 GIVDHVVES 193


>gi|153813468|ref|ZP_01966136.1| hypothetical protein RUMOBE_03888 [Ruminococcus obeum ATCC 29174]
 gi|149830412|gb|EDM85504.1| hypothetical protein RUMOBE_03888 [Ruminococcus obeum ATCC 29174]
          Length = 193

 Score =  244 bits (622), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 115/190 (60%), Positives = 149/190 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLLK+RI+F+  ++ D  A++I AQLLFLEAE+P K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLKDRIIFLGEEVNDVSASVIVAQLLFLEAEDPSKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMAIYDTM++IK  +ST C+G AASMG+ LL+ G KG RFALP++ I
Sbjct: 61  QLYINSPGGSVTAGMAIYDTMKYIKCDVSTICLGMAASMGAFLLAGGTKGKRFALPHSTI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I+  A  I + KR LNEI  +N G+ YE VEK  DRD+ M+A EA
Sbjct: 121 MIHQPSGGAQGQATEIQIVADHIAQTKRTLNEILAENTGQPYEVVEKDTDRDNYMTAEEA 180

Query: 196 CDWGVVDKVL 205
             +G++D V+
Sbjct: 181 KAYGLIDGVV 190


>gi|222100864|ref|YP_002535432.1| ATP-dependent Clp protease proteolytic subunit [Thermotoga
           neapolitana DSM 4359]
 gi|221573254|gb|ACM24066.1| ATP-dependent Clp protease proteolytic subunit [Thermotoga
           neapolitana DSM 4359]
          Length = 200

 Score =  244 bits (622), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 115/190 (60%), Positives = 150/190 (78%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP+VVE T R ER+YDI+SRLLK+RIVF+   I+DH+A L+ AQLLFLEAE+P K++ LY
Sbjct: 11  VPIVVESTGRYERAYDIFSRLLKDRIVFLGSPIDDHVANLVIAQLLFLEAEDPDKDVYLY 70

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDTMQ+IK  +ST C+GQAASM ++LL+AG KG R+ALPNARI++H
Sbjct: 71  INSPGGSVTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGTKGKRYALPNARIMIH 130

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  G A D+E   +++++IK  LN I  K+ G+  E++EK  DRD  MSA EA ++
Sbjct: 131 QPLGGAEGPAKDVEIITRELLRIKDLLNRILSKHTGQPIEKIEKDTDRDFFMSAEEAKEY 190

Query: 199 GVVDKVLMSR 208
           G+VDKV+ SR
Sbjct: 191 GIVDKVVSSR 200


>gi|304407273|ref|ZP_07388926.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
           curdlanolyticus YK9]
 gi|304343714|gb|EFM09555.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
           curdlanolyticus YK9]
          Length = 195

 Score =  244 bits (622), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 112/190 (58%), Positives = 147/190 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VPMV+EQ NRGER+YDIYSRLLK+RI+F+   + D +A  I AQLLFL A++P+K+I
Sbjct: 3   MNFVPMVIEQNNRGERAYDIYSRLLKDRIIFLGTGVNDIVANSIIAQLLFLAADDPEKDI 62

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG +TAGMAIYDTMQFIKP +ST C+G AASMG+ LL+AG  G R+ALPN+ +
Sbjct: 63  SLYINSPGGSITAGMAIYDTMQFIKPDVSTICVGMAASMGAFLLTAGAIGKRYALPNSEV 122

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDIE  A+ I+K++ +LN I  +   +  E +EK  DRD+ MSA EA
Sbjct: 123 MIHQPLGGAEGQASDIEIRAKRILKMRDKLNGILAERSNQPLERIEKDTDRDYFMSAEEA 182

Query: 196 CDWGVVDKVL 205
             +G++DKV+
Sbjct: 183 RQYGLIDKVI 192


>gi|313673004|ref|YP_004051115.1| ATP-dependent clp protease proteolytic subunit clpp
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939760|gb|ADR18952.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 195

 Score =  244 bits (622), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 110/190 (57%), Positives = 149/190 (78%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+EQT RGER YDIYSRLLK+RI+F+   I+D +A  I AQ+LFLEAE+P+K+I LY
Sbjct: 5   IPYVIEQTGRGERVYDIYSRLLKDRIIFLGTAIDDTVANSIVAQMLFLEAEDPKKDIYLY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGV+T+G+AI+DTM +IKP +ST C+GQAASMG++LL+ G KG RFALPN RI++H
Sbjct: 65  INSPGGVITSGLAIFDTMNYIKPDVSTICIGQAASMGAVLLACGAKGKRFALPNTRIMIH 124

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GGF GQA DIE  A++I+++K ++NEI  +   K  E+++   DRD  MSA EA  +
Sbjct: 125 QPLGGFQGQAKDIEIQAKEILRLKSKINEILAERTSKPIEQIDADCDRDFFMSAEEAKAY 184

Query: 199 GVVDKVLMSR 208
           G++D+V+  R
Sbjct: 185 GLIDEVIEKR 194


>gi|322378952|ref|ZP_08053366.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter suis
           HS1]
 gi|322379806|ref|ZP_08054103.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter suis
           HS5]
 gi|321147774|gb|EFX42377.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter suis
           HS5]
 gi|321148628|gb|EFX43114.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter suis
           HS1]
          Length = 197

 Score =  243 bits (621), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 110/190 (57%), Positives = 152/190 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P V+E+T RGERSYDIYSRLLK+RIV ++G+I D +A+ I AQLLFLEAE+P+K+I
Sbjct: 1   MNYIPYVIEKTGRGERSYDIYSRLLKDRIVLLSGEINDAVASTIVAQLLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGG VT+G++IYDTM +I P I T C+GQAASMG+ LLS G KG RF+LP+ARI
Sbjct: 61  NLYINSPGGSVTSGLSIYDTMNYIHPDICTICIGQAASMGAFLLSCGTKGKRFSLPHARI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++I  + ++I+++K  LN+I  +N G+T E++E+  DRD  MSA +A
Sbjct: 121 MIHQPLGGTEGQATNIAIYTKEILRLKNTLNQIMAENTGQTLEKIEQDSDRDFFMSAEDA 180

Query: 196 CDWGVVDKVL 205
            ++G+VD VL
Sbjct: 181 KEYGLVDAVL 190


>gi|315639062|ref|ZP_07894230.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           upsaliensis JV21]
 gi|315480838|gb|EFU71474.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           upsaliensis JV21]
          Length = 194

 Score =  243 bits (621), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 112/187 (59%), Positives = 149/187 (79%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+E+T+RGERSYDIYSRLLK+RIV ++G+I D +A+ I AQLLFLEAE+PQK+I LY
Sbjct: 3   IPYVIEKTSRGERSYDIYSRLLKDRIVMLSGEINDDVASSIVAQLLFLEAEDPQKDIYLY 62

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGV+T+G +IYDTM +IKP + T C+GQAASMG+ LLS G K  RFALPN+RI++H
Sbjct: 63  INSPGGVITSGFSIYDTMNYIKPDVCTICIGQAASMGAFLLSCGAKQKRFALPNSRIMIH 122

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA+DIE  A++I+++K  LNEI  +N  +   ++ K  +RD  MSA EA ++
Sbjct: 123 QPLGGARGQATDIEIQAKEILRLKTILNEILAQNTNQKIAKITKDTERDFFMSAVEAKEY 182

Query: 199 GVVDKVL 205
           G++DKVL
Sbjct: 183 GLIDKVL 189


>gi|154175235|ref|YP_001407437.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           curvus 525.92]
 gi|112803266|gb|EAU00610.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           curvus 525.92]
          Length = 196

 Score =  243 bits (621), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 113/187 (60%), Positives = 150/187 (80%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP+VVE+T+RGERSYDIYSRLLK+RIV ++G+IED MA  I AQLLFLEAE+P+K+I LY
Sbjct: 5   VPVVVERTSRGERSYDIYSRLLKDRIVMLSGEIEDGMAASIVAQLLFLEAEDPEKDIYLY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGV+T+G +I+DTM +IKP + T C+GQAASMG+ LLS G  G R+ALPN+RI++H
Sbjct: 65  INSPGGVITSGFSIFDTMNYIKPDVCTICIGQAASMGAFLLSCGAPGKRYALPNSRIMIH 124

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQASDIE  A++I+++K  LN I  KN G+   ++ K  +RD  MS+ EA ++
Sbjct: 125 QPLGGARGQASDIEIQAREILRLKEILNGILAKNTGQKLNKIVKDTERDFFMSSHEAKEY 184

Query: 199 GVVDKVL 205
           G++DK+L
Sbjct: 185 GLIDKIL 191


>gi|168335354|ref|ZP_02693449.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Epulopiscium
           sp. 'N.t. morphotype B']
          Length = 193

 Score =  243 bits (621), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 109/187 (58%), Positives = 147/187 (78%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +PMVVEQTNRGERSYDIYSRLLK+RI+ +  ++    ++L  AQLLFLEAE+P K+I LY
Sbjct: 4   IPMVVEQTNRGERSYDIYSRLLKDRIILLCDEVNHVTSSLTVAQLLFLEAEDPDKDIMLY 63

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG +  GMAIYDTMQ+IKP +ST CMG AASMG+ LL+ G+KG R ALPNA I++H
Sbjct: 64  INSPGGSIVDGMAIYDTMQYIKPDVSTICMGMAASMGAFLLAGGQKGKRLALPNAEIMIH 123

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA+DI+ HA+ I++ K ++N+I   N G+T E+V    +RD+ M+A+EA ++
Sbjct: 124 QPLGGTRGQATDIQIHAEHIIRTKAKMNQILSANTGQTLEKVALDTERDYYMTAAEAKEY 183

Query: 199 GVVDKVL 205
           G++D+V+
Sbjct: 184 GIIDRVI 190


>gi|317130215|ref|YP_004096497.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bacillus
           cellulosilyticus DSM 2522]
 gi|315475163|gb|ADU31766.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cellulosilyticus DSM 2522]
          Length = 195

 Score =  243 bits (621), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 108/190 (56%), Positives = 151/190 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQTNRGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL A++P+K+I
Sbjct: 1   MNLVPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAADDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG +TAGMAI+DTMQFI+P + T C+G AASMG+ LL+AGE G RFALPN+ +
Sbjct: 61  SLYINSPGGSITAGMAIFDTMQFIQPKVQTICIGMAASMGAFLLAAGEPGKRFALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DIE HA+ IV+++ +LNEI  +  G+  E + +  DRD+ M++ EA
Sbjct: 121 MIHQPLGGAQGQAADIEIHAKRIVQMREKLNEILAERTGQPIEVIARDTDRDNFMTSFEA 180

Query: 196 CDWGVVDKVL 205
             +G++D+V+
Sbjct: 181 KKYGLIDEVM 190


>gi|289577854|ref|YP_003476481.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Thermoanaerobacter italicus Ab9]
 gi|297544142|ref|YP_003676444.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|289527567|gb|ADD01919.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter italicus Ab9]
 gi|296841917|gb|ADH60433.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 195

 Score =  243 bits (621), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 111/191 (58%), Positives = 150/191 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQTNRGERSYDI+SRLLK+RIVF+  +I D  A+L+ AQLLFLEAE+P K+I
Sbjct: 1   MSLVPIVVEQTNRGERSYDIFSRLLKDRIVFLGEEINDTTASLVIAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +TAG AIYDTMQ+IKP + T C+G AASM + LL+AG KG RFALPN+ I
Sbjct: 61  WLYINSPGGSITAGFAIYDTMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+ HA+ I+K++ +L+ I  +N G+  E+++   +RD  M A +A
Sbjct: 121 MIHQPLGGMHGQATDIKIHAERILKLRDKLDRILAENTGQPIEKIKADTERDFFMDAEDA 180

Query: 196 CDWGVVDKVLM 206
             +G++D+VL+
Sbjct: 181 KAYGIIDEVLI 191


>gi|302342888|ref|YP_003807417.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfarculus
           baarsii DSM 2075]
 gi|301639501|gb|ADK84823.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfarculus
           baarsii DSM 2075]
          Length = 198

 Score =  243 bits (620), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 119/191 (62%), Positives = 155/191 (81%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P V+EQT+RGERSYDIYSRLLK+RI+ +   I+D++A ++ AQLLFLEAE+P K+I L
Sbjct: 4   LIPFVIEQTSRGERSYDIYSRLLKDRIIILGQAIDDNVANVVTAQLLFLEAEDPNKDIHL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVTAGMAIYDTMQFIK P+ST CMGQAASM +LLL+AGE G R++LP ARIL+
Sbjct: 64  YINSPGGVVTAGMAIYDTMQFIKAPVSTLCMGQAASMAALLLAAGEPGKRYSLPKARILI 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQASDIE HA++I++++  LN I  ++ G++ E++    +RD+ MS  EA  
Sbjct: 124 HQPSGGAQGQASDIEIHAREILRMREDLNNILAQHTGQSLEKIAADTERDYFMSGDEAVA 183

Query: 198 WGVVDKVLMSR 208
           +GV+DKV+  R
Sbjct: 184 YGVIDKVISRR 194


>gi|296273946|ref|YP_003656577.1| ATP-dependent Clp protease proteolytic subunit ClpP [Arcobacter
           nitrofigilis DSM 7299]
 gi|296098120|gb|ADG94070.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Arcobacter
           nitrofigilis DSM 7299]
          Length = 194

 Score =  243 bits (620), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 107/193 (55%), Positives = 154/193 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P VVE++ RGERSYDIYSRLLK+RI+ ++G+I D +A+ I AQLLFLEAE+P K+I
Sbjct: 1   MSYIPYVVEKSGRGERSYDIYSRLLKDRIIMLSGEINDPVASTIVAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+T+GM+IYDTM +IKP + T C+GQAASMG+ LLS+G KG R++LPN+R+
Sbjct: 61  YLYINSPGGVITSGMSIYDTMNYIKPDVCTICIGQAASMGAFLLSSGVKGKRYSLPNSRV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQ++DI+  A++I ++K  LN++  +  G+  + +EK  DRD+ MSA EA
Sbjct: 121 MIHQPSGGAQGQSTDIQIQAKEIQRMKDTLNKMIAEQTGQPIKVIEKDTDRDNFMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
           C +G++D+V+ + 
Sbjct: 181 CKYGLIDEVITNH 193


>gi|92114168|ref|YP_574096.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Chromohalobacter salexigens DSM 3043]
 gi|116243130|sp|Q1QVW1|CLPP_CHRSD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|91797258|gb|ABE59397.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Chromohalobacter salexigens DSM 3043]
          Length = 206

 Score =  243 bits (620), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 115/192 (59%), Positives = 156/192 (81%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMVVEQ  RGER+YDIYSRLLKER++F+ G +ED+MA L+ AQ+LFLE+ENP K+I 
Sbjct: 12  GLVPMVVEQNARGERAYDIYSRLLKERVIFLIGPVEDYMANLVVAQMLFLESENPDKDIH 71

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQAASMG+LLL+ G  G R+ LP++R++
Sbjct: 72  LYINSPGGSVTAGMSIYDTMQFIKPDVSTVCVGQAASMGALLLAGGAAGKRYCLPHSRMM 131

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG+ GQA+DIE H ++I+ I+++LNEI  K+ G+  E V +  DRD+ M+ ++A 
Sbjct: 132 IHQPLGGYQGQAADIEIHTKEILNIRQQLNEILAKHTGQDAETVARDTDRDNFMNGTQAV 191

Query: 197 DWGVVDKVLMSR 208
           ++G++D +L  R
Sbjct: 192 EYGLIDAMLDKR 203


>gi|34558484|ref|NP_908299.1| ATP-dependent Clp protease proteolytic subunit [Wolinella
           succinogenes DSM 1740]
 gi|60389700|sp|Q7M7M3|CLPP_WOLSU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|34481778|emb|CAE11199.1| ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT [Wolinella
           succinogenes]
          Length = 195

 Score =  243 bits (620), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 109/190 (57%), Positives = 150/190 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P V+E+T RGERSYDIYSRLLK+RI+ ++G+I D +A+ I +Q+LFLEAE+P+K+I
Sbjct: 1   MNYIPYVIEKTGRGERSYDIYSRLLKDRIIMLSGEINDGVASSIVSQMLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+T+GM+IYDTM ++KP I T C+GQAASMG+ LLS G KG RF+LPN+RI
Sbjct: 61  YLYINSPGGVITSGMSIYDTMNYVKPDICTICIGQAASMGAFLLSCGTKGKRFSLPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DIE  A++I+++K  LN I   N G+  E++ K  DRD  MSA E+
Sbjct: 121 MIHQPLGGAQGQATDIEIQAKEILRLKSILNGILASNTGQPLEKIAKDTDRDFFMSAQES 180

Query: 196 CDWGVVDKVL 205
            ++G++D VL
Sbjct: 181 KEYGLIDNVL 190


>gi|60416366|sp|Q8RC25|CLPP_THETN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
          Length = 195

 Score =  243 bits (620), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 107/191 (56%), Positives = 152/191 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQTNRGER+YDI+SRLLK+RIVF+  +I D  A+L+ AQ+LFLEAE+P K+I
Sbjct: 1   MSLVPIVVEQTNRGERAYDIFSRLLKDRIVFLGDEINDTTASLVIAQMLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +TAG+AIYDTMQ+IKP + T C+G AASM + LL+AG KG RFALPN+ I
Sbjct: 61  WLYINSPGGSITAGLAIYDTMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+ HA+ +++++ +L  I  +N G+  E+++  ++RD+ M+A EA
Sbjct: 121 MIHQPWGGMQGQATDIKIHAERLLRLRDKLERILSENTGQPLEKIKADMERDYFMTAEEA 180

Query: 196 CDWGVVDKVLM 206
             +G++D +L+
Sbjct: 181 KTYGIIDDILV 191


>gi|295401529|ref|ZP_06811498.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312109546|ref|YP_003987862.1| ATP-dependent Clp protease proteolytic subunit ClpP [Geobacillus
           sp. Y4.1MC1]
 gi|294976441|gb|EFG52050.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311214647|gb|ADP73251.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus
           sp. Y4.1MC1]
          Length = 196

 Score =  243 bits (620), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 110/195 (56%), Positives = 155/195 (79%), Gaps = 1/195 (0%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT+RGER+YDIYSRLLK+RI+ +   I+D +A  I +QLLFL AE+P+K+I
Sbjct: 1   MNLIPTVIEQTSRGERAYDIYSRLLKDRIIILGSPIDDQVANSIVSQLLFLAAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG +TAG+AIYDTMQFIKP +ST C+G AASMG+ LL+AG KG RFALPN+ I
Sbjct: 61  SLYINSPGGSITAGLAIYDTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN I  +N G+  + +E+  DRD+ M+A +A
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILFLRDKLNRILSENTGQPIDVIERDTDRDNFMTAQKA 180

Query: 196 CDWGVVDKVLMSRID 210
            ++G++D+VL +R+D
Sbjct: 181 QEYGIIDRVL-TRVD 194


>gi|295109356|emb|CBL23309.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ruminococcus
           obeum A2-162]
          Length = 193

 Score =  243 bits (619), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 114/190 (60%), Positives = 149/190 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLLK+RI+F+  ++ D  A++I AQLLFLEAE+P K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLKDRIIFLGEEVNDVSASIIVAQLLFLEAEDPSKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMAIYDTM++IK  +ST C+G AASMG+ LL+ G KG R+ALP++ I
Sbjct: 61  QLYINSPGGSVTAGMAIYDTMKYIKCDVSTICLGMAASMGAFLLAGGTKGKRYALPHSTI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I+  A  I + KR LNEI  +N G+ YE VEK  DRD+ M+A EA
Sbjct: 121 MIHQPSGGAQGQATEIQIVADHIAQTKRTLNEILAENTGQPYEVVEKDTDRDNYMTAEEA 180

Query: 196 CDWGVVDKVL 205
             +G++D V+
Sbjct: 181 KAYGLIDGVV 190


>gi|94968588|ref|YP_590636.1| ATP-dependent Clp protease proteolytic subunit ClpP [Candidatus
           Koribacter versatilis Ellin345]
 gi|116243126|sp|Q1IRD8|CLPP_ACIBL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|94550638|gb|ABF40562.1| ATP-dependent Clp protease proteolytic subunit ClpP [Candidatus
           Koribacter versatilis Ellin345]
          Length = 194

 Score =  243 bits (619), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 109/189 (57%), Positives = 156/189 (82%), Gaps = 1/189 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMV+EQT+RGER+YDIYSRLL++ I+F+   I+D++A LI AQ+LFLEAE+P+K+ISL
Sbjct: 2   LVPMVIEQTSRGERAYDIYSRLLRDNIIFLGTPIDDNVANLIIAQMLFLEAEDPEKDISL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TAGMAIYDTMQFI+P ++T C+GQ ASMG+ LL++G  G R+ALP +RIL+
Sbjct: 62  YINSPGGSITAGMAIYDTMQFIRPDVATICIGQCASMGATLLASGAPGKRYALPTSRILI 121

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP   G SGQA+DI+ HA++I++++   N++  K+C +  E+VEK ++RD IM+A +A 
Sbjct: 122 HQPLMSGLSGQATDIDIHAREILRMREITNQLLAKHCNQRLEKVEKDVERDFIMNAQQAK 181

Query: 197 DWGVVDKVL 205
           ++G+VD ++
Sbjct: 182 EYGLVDDII 190


>gi|229164087|ref|ZP_04292023.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           R309803]
 gi|228619323|gb|EEK76213.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           R309803]
          Length = 193

 Score =  243 bits (619), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 106/193 (54%), Positives = 153/193 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFLE+++P+K+I
Sbjct: 1   MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG +TAGMAIYDTMQFIKP +ST C+G AASMG+ LL+AGEKG RFALPN+ +
Sbjct: 61  HIYINSPGGSITAGMAIYDTMQFIKPQVSTICIGMAASMGAFLLAAGEKGKRFALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN+I     G+  E +++  DRD+ M+A +A
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILFLREKLNQILADRTGQPLEVLQRDTDRDNFMTAEKA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++DK+  +R
Sbjct: 181 LEYGLIDKIFTNR 193


>gi|308067009|ref|YP_003868614.1| ATP-dependent Clp protease proteolytic subunit(Endopeptidase Clp)
           [Paenibacillus polymyxa E681]
 gi|305856288|gb|ADM68076.1| ATP-dependent Clp protease proteolytic subunit(Endopeptidase Clp)
           [Paenibacillus polymyxa E681]
          Length = 193

 Score =  243 bits (619), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 111/187 (59%), Positives = 146/187 (78%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MVVEQ+NRGER+YDIYSRLLK+RI+ +   + D +A  I AQ+LFL AE+P+K+I LYIN
Sbjct: 1   MVVEQSNRGERAYDIYSRLLKDRIILLGSDVNDVVANSIIAQMLFLAAEDPEKDIHLYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGG +TAGMAI+DTMQ+IKP +ST C+G AASMG+ LL+AG KG RFALPN+ I++HQP
Sbjct: 61  SPGGSITAGMAIFDTMQYIKPDVSTICVGMAASMGAFLLNAGAKGKRFALPNSEIMIHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            GG  GQA+DIE  A+ I+K++ +LN I     G+  E +EK  DRD+ MSA +A ++G+
Sbjct: 121 LGGAQGQATDIEIRARRILKMRDKLNRILADRTGQPLERIEKDTDRDYFMSADDAKEYGI 180

Query: 201 VDKVLMS 207
           +DKVL S
Sbjct: 181 IDKVLTS 187


>gi|205375127|ref|ZP_03227918.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           coahuilensis m4-4]
          Length = 198

 Score =  243 bits (619), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 110/199 (55%), Positives = 155/199 (77%), Gaps = 1/199 (0%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RI+ +   I+D++A  I AQLLFLE ENP+K+I
Sbjct: 1   MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVAQLLFLETENPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG +TAGMAIYDTMQ+IKP + T C+G AASMG+ LL+AGE G RFALPN+ +
Sbjct: 61  SLYINSPGGSITAGMAIYDTMQYIKPKVQTICIGMAASMGAFLLAAGEPGKRFALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN I  +  G+  + + +  DRD+ M+A  A
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILFLREKLNTILSERTGQPLDVIAQDTDRDNFMTAERA 180

Query: 196 CDWGVVDKVLMSRIDIEEK 214
            ++G++DK++ +R DI++K
Sbjct: 181 LEYGLIDKII-TRHDIDKK 198


>gi|116622996|ref|YP_825152.1| ATP-dependent Clp protease proteolytic subunit ClpP [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116226158|gb|ABJ84867.1| ATP-dependent Clp protease proteolytic subunit ClpP [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 206

 Score =  243 bits (619), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 110/192 (57%), Positives = 154/192 (80%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQT+RGER+YDIYSRLLKE I+F+   I+D +A LI AQLLFLEAE+P+K+IS+
Sbjct: 6   LVPMVVEQTSRGERAYDIYSRLLKENIIFLGTPIDDQVANLIIAQLLFLEAEDPEKDISI 65

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG +TAG+AI DTM FI+P I T C+GQAASM ++LL+ G KG RF+LPN+RI++
Sbjct: 66  YVNSPGGSITAGLAILDTMAFIRPDIVTICVGQAASMAAVLLAKGTKGKRFSLPNSRIMI 125

Query: 138 HQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQPS  G +GQA+DI+ +A++I++++  LN +     G++ E V K +DRD+IM   +A 
Sbjct: 126 HQPSMQGLAGQAADIDIYAREILRMREILNSMLADATGQSIERVAKDVDRDYIMEPDQAV 185

Query: 197 DWGVVDKVLMSR 208
           ++G++D+V+ SR
Sbjct: 186 NYGMIDRVITSR 197


>gi|57242492|ref|ZP_00370430.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           upsaliensis RM3195]
 gi|57016777|gb|EAL53560.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           upsaliensis RM3195]
          Length = 194

 Score =  243 bits (619), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 112/187 (59%), Positives = 148/187 (79%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+E+T+RGERSYDIYSRLLK+RIV ++G+I D +A+ I AQLLFLEAE+PQK+I LY
Sbjct: 3   IPYVIEKTSRGERSYDIYSRLLKDRIVMLSGEINDDVASSIVAQLLFLEAEDPQKDIYLY 62

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGV+T+G +IYDTM +IKP + T C+GQAASMG+ LLS G K  RFALPN+RI++H
Sbjct: 63  INSPGGVITSGFSIYDTMNYIKPDVCTICIGQAASMGAFLLSCGAKQKRFALPNSRIMIH 122

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA+DIE  A++I+++K  LNEI  +N  +    + K  +RD  MSA EA ++
Sbjct: 123 QPLGGARGQATDIEIQAKEILRLKTILNEILAQNTNQKIARITKDTERDFFMSAIEAKEY 182

Query: 199 GVVDKVL 205
           G++DKVL
Sbjct: 183 GLIDKVL 189


>gi|157124223|ref|XP_001660372.1| endopeptidase clp, putative [Aedes aegypti]
 gi|108882807|gb|EAT47032.1| endopeptidase clp, putative [Aedes aegypti]
          Length = 225

 Score =  243 bits (619), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 111/191 (58%), Positives = 151/191 (79%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
            L LVP+VVEQT RGER+YDI+SRLLKERI+ + G I D +++LI AQLLFL++EN  K 
Sbjct: 24  LLNLVPIVVEQTGRGERAYDIFSRLLKERIICLMGPIHDDLSSLIVAQLLFLQSENGTKP 83

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I +YINSPGG VTAG+AIYDTMQ++KPP++T+C+GQA SMGSLLL+AG  GMR +LPNAR
Sbjct: 84  IHMYINSPGGSVTAGLAIYDTMQYVKPPVATWCVGQACSMGSLLLAAGAPGMRHSLPNAR 143

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQPSGG  GQA+DI+  A++I+K+K++L EIY K+   + + +   ++RD  ++  E
Sbjct: 144 IMIHQPSGGAQGQATDIQIQAEEILKLKKQLTEIYGKHTKTSVDVLYSKMERDTFLNPEE 203

Query: 195 ACDWGVVDKVL 205
           A   G++D VL
Sbjct: 204 AQALGIIDTVL 214


>gi|238926240|ref|ZP_04658000.1| endopeptidase Clp [Selenomonas flueggei ATCC 43531]
 gi|238885920|gb|EEQ49558.1| endopeptidase Clp [Selenomonas flueggei ATCC 43531]
          Length = 197

 Score =  243 bits (619), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 111/196 (56%), Positives = 155/196 (79%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MVVE + RGER+YDIYSRLLKERI+F+ G I+D +A +I AQ+LFLE+E+P K+I LYIN
Sbjct: 1   MVVENSGRGERAYDIYSRLLKERIIFLGGPIDDSVANVIVAQMLFLESEDPDKDIHLYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGGVVTAG+AIYDTMQ+IKP +ST C+GQAASMGS+LL+AG KG R+ALP+ARI++HQP
Sbjct: 61  SPGGVVTAGLAIYDTMQYIKPDVSTICVGQAASMGSILLTAGAKGKRYALPHARIMIHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            GG  GQ++DI+  A++I++++   NEI  ++ G+   ++    +RD+ MSA EA ++G+
Sbjct: 121 LGGAQGQSTDIQIQAKEILRLREVGNEILARHTGQDTAKINIDTERDNFMSAEEAKEYGL 180

Query: 201 VDKVLMSRIDIEEKSK 216
           +D+V++   D    SK
Sbjct: 181 IDEVVLRPKDTSADSK 196


>gi|197302444|ref|ZP_03167499.1| hypothetical protein RUMLAC_01172 [Ruminococcus lactaris ATCC
           29176]
 gi|197298342|gb|EDY32887.1| hypothetical protein RUMLAC_01172 [Ruminococcus lactaris ATCC
           29176]
          Length = 193

 Score =  243 bits (619), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 113/193 (58%), Positives = 150/193 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLLKERI+F+  ++ D  A++I AQLLFLEA++P K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLKERIIFLGEEVNDVSASVIVAQLLFLEADDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMAIYDTMQ+IK  +ST C+G AASMG+ LLS G KG RFALPNA I
Sbjct: 61  QLYINSPGGSVTAGMAIYDTMQYIKCDVSTVCIGMAASMGAFLLSGGAKGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++I+  A+ I++ ++ LN I   N GK  E ++   +RD+ MSA+EA
Sbjct: 121 MIHQPLGGAQGQATEIQIAAEHILRTRKTLNSILAANTGKPLEVIQTDTERDNFMSAAEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++D+V+ S 
Sbjct: 181 KEYGLIDEVIASH 193


>gi|302673690|ref|XP_003026531.1| hypothetical protein SCHCODRAFT_86223 [Schizophyllum commune H4-8]
 gi|300100214|gb|EFI91628.1| hypothetical protein SCHCODRAFT_86223 [Schizophyllum commune H4-8]
          Length = 245

 Score =  242 bits (618), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 118/198 (59%), Positives = 148/198 (74%), Gaps = 7/198 (3%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMV+EQT RGERSYDI+SRLL+ER+V + G I D  + LI +QLLFLEAE   K I L
Sbjct: 43  LVPMVIEQTGRGERSYDIFSRLLRERVVMLYGPIRDTDSALIVSQLLFLEAEETSKPIHL 102

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+AIYDTMQ++  PI T+C+G AASMGSLLL+AGEKG R  LPNA I++
Sbjct: 103 YINSPGGSVTAGLAIYDTMQYVSSPIHTYCIGCAASMGSLLLAAGEKGKRHCLPNASIMI 162

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYE-------EVEKTLDRDHIM 190
           HQPSGG SGQASD+  HA++I++++  L  IY K+C K  E         E+ L+RD+ M
Sbjct: 163 HQPSGGASGQASDVAIHAKEILRVREALTGIYQKHCAKPDESEAEGLARFERALERDYFM 222

Query: 191 SASEACDWGVVDKVLMSR 208
           +A EA D+G+VD +L  R
Sbjct: 223 TAKEAIDFGIVDGILEKR 240


>gi|229014309|ref|ZP_04171428.1| ATP-dependent Clp protease proteolytic subunit [Bacillus mycoides
           DSM 2048]
 gi|229099577|ref|ZP_04230505.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock3-29]
 gi|229105752|ref|ZP_04236381.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock3-28]
 gi|229118641|ref|ZP_04247993.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock1-3]
 gi|228664833|gb|EEL20323.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock1-3]
 gi|228677641|gb|EEL31889.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock3-28]
 gi|228683873|gb|EEL37823.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock3-29]
 gi|228746909|gb|EEL96793.1| ATP-dependent Clp protease proteolytic subunit [Bacillus mycoides
           DSM 2048]
          Length = 193

 Score =  242 bits (618), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 106/193 (54%), Positives = 152/193 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFLE+++P+K+I
Sbjct: 1   MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG +TAGMAIYDTMQFIKP +ST C+G AASMG+ LL+AGEKG RFALPN+ +
Sbjct: 61  HIYINSPGGSITAGMAIYDTMQFIKPQVSTICIGMAASMGAFLLAAGEKGKRFALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN+I     G+  E +++  DRD+ M+A  A
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILFLREKLNQILADRTGQPLEVLQRDTDRDNFMTAERA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++DK+  +R
Sbjct: 181 LEYGLIDKIFTNR 193


>gi|73987256|ref|XP_854538.1| PREDICTED: similar to Putative ATP-dependent Clp protease
           proteolytic subunit, mitochondrial precursor
           (Endopeptidase Clp) [Canis familiaris]
          Length = 273

 Score =  242 bits (618), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 113/191 (59%), Positives = 156/191 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           L L+P+VVEQT RGER+YDIYSRLL+ERIV V G I+D +A+L+ AQLLFL++E+ +K I
Sbjct: 52  LPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPI 111

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG+VT+G+AIYDTMQ+I  PI T+C+GQAASMGSLLL+AG  GMR +LPN+RI
Sbjct: 112 HMYINSPGGMVTSGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRI 171

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+DI   A++I+K+K++L  IY K+  ++ + +E  ++RD  MS  EA
Sbjct: 172 MIHQPSGGARGQATDIAIQAEEIMKLKKQLYGIYAKHTKQSLQVIESAMERDRYMSPMEA 231

Query: 196 CDWGVVDKVLM 206
            ++G++DKVL+
Sbjct: 232 QEFGILDKVLV 242


>gi|218290814|ref|ZP_03494883.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218239172|gb|EED06373.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 198

 Score =  242 bits (618), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 112/187 (59%), Positives = 147/187 (78%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+EQT+RGER+YDIYSRLLK+RIV +   I+D +A  I AQLLFL A++P+K+I +Y
Sbjct: 5   IPYVIEQTSRGERTYDIYSRLLKDRIVILGTPIDDQVANSIVAQLLFLAADDPEKDIQMY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAGMAIYDTMQ I+P +ST C+G AASMG+ LL+AGEKG R+ALPNA I++H
Sbjct: 65  INSPGGSVTAGMAIYDTMQHIRPAVSTLCIGMAASMGAFLLAAGEKGKRYALPNAEIMIH 124

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQASDI+ HA+ I+K K +LN +  +  G+  E +E+  DRDH M+A EA  +
Sbjct: 125 QPLGGVEGQASDIKIHAEWILKTKDKLNRLLSERTGQPLEVIERDTDRDHFMTAEEAKAY 184

Query: 199 GVVDKVL 205
           G++D+VL
Sbjct: 185 GLIDEVL 191


>gi|258511812|ref|YP_003185246.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257478538|gb|ACV58857.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 198

 Score =  242 bits (618), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 112/187 (59%), Positives = 147/187 (78%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+EQT+RGER+YDIYSRLLK+RIV +   I+D +A  I AQLLFL A++P+K+I +Y
Sbjct: 5   IPYVIEQTSRGERTYDIYSRLLKDRIVILGTPIDDQVANSIVAQLLFLAADDPEKDIQMY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAGMAIYDTMQ I+P +ST C+G AASMG+ LL+AGEKG R+ALPNA I++H
Sbjct: 65  INSPGGSVTAGMAIYDTMQHIRPAVSTLCIGMAASMGAFLLAAGEKGKRYALPNAEIMIH 124

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQASDI+ HA+ I+K K +LN +  +  G+  E +E+  DRDH M+A EA  +
Sbjct: 125 QPLGGVEGQASDIKIHAEWILKTKDKLNRLLSERTGQPLEVIERDTDRDHFMTAEEAKAY 184

Query: 199 GVVDKVL 205
           G++D+VL
Sbjct: 185 GLIDEVL 191


>gi|107101233|ref|ZP_01365151.1| hypothetical protein PaerPA_01002266 [Pseudomonas aeruginosa PACS2]
          Length = 192

 Score =  242 bits (618), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 118/188 (62%), Positives = 151/188 (80%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MVVEQ+ RGER+YDIYSRLLKERI+F+ GQ+ED+MA L+ AQLLFLEAENP+K+I LYIN
Sbjct: 1   MVVEQSARGERAYDIYSRLLKERIIFLVGQVEDYMANLVVAQLLFLEAENPEKDIHLYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+LLL+ G  G R+ LP++R+++HQP
Sbjct: 61  SPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGALLLAGGAAGKRYCLPHSRMMIHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            GGF GQASDIE HA++I+ IK RLN+I   + G+  + + +  DRD  MS  EA  +G+
Sbjct: 121 LGGFQGQASDIEIHAKEILFIKERLNQILAHHTGQPLDVIARDTDRDRFMSGDEAVKYGL 180

Query: 201 VDKVLMSR 208
           +DKV+  R
Sbjct: 181 IDKVMTQR 188


>gi|327264015|ref|XP_003216812.1| PREDICTED: putative ATP-dependent Clp protease proteolytic subunit,
           mitochondrial-like [Anolis carolinensis]
          Length = 266

 Score =  242 bits (618), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 115/206 (55%), Positives = 160/206 (77%), Gaps = 1/206 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           +S   C  +   +  + L+P+VVEQT RGER+YDIYSRLL+ERIV V G I+D +A+L+ 
Sbjct: 32  LSVSRCLHQSPRN-HIPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDGVASLVI 90

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFL++E+ +K I +YINSPGG VT+G+AIYDTMQ+I  PI T+C+GQAASMGSLLL+
Sbjct: 91  AQLLFLQSESNKKPIHMYINSPGGTVTSGLAIYDTMQYILNPICTWCVGQAASMGSLLLA 150

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG  GMR +LPN+RI++HQPSGG  GQA+DI   A++I+K+K+++N IY K+  +  E +
Sbjct: 151 AGSPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEILKLKKQINGIYAKHTKQNLEVI 210

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLM 206
           E  ++RD  MS  EA ++G++DKVL+
Sbjct: 211 EAAMERDRYMSPVEAQEFGILDKVLV 236


>gi|321468091|gb|EFX79078.1| hypothetical protein DAPPUDRAFT_231060 [Daphnia pulex]
          Length = 235

 Score =  242 bits (618), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 106/188 (56%), Positives = 153/188 (81%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+V+EQT RGER+YDIYSRLLKERI+ V G I D +++L+ AQLLFL++E+ +K + +
Sbjct: 27  LVPIVIEQTGRGERAYDIYSRLLKERIICVMGPITDDLSSLVVAQLLFLQSESNKKPVHM 86

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+ IYDTMQ++ PPI+T+C+GQA SM SLLL++G  GMR++LPN+RI++
Sbjct: 87  YINSPGGSVTAGLGIYDTMQYVLPPIATWCVGQACSMASLLLASGSPGMRYSLPNSRIMI 146

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQA+DI+  A++I+K+K+++N++Y K+ G     +E  ++RD  MS  EA +
Sbjct: 147 HQPSGGVQGQATDIQIQAEEIMKLKKQINQLYGKHTGLQLSVIESNMERDKFMSPVEAKE 206

Query: 198 WGVVDKVL 205
           +G++DK+L
Sbjct: 207 FGLIDKIL 214


>gi|323484460|ref|ZP_08089826.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           symbiosum WAL-14163]
 gi|323692476|ref|ZP_08106710.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           symbiosum WAL-14673]
 gi|323402238|gb|EGA94570.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           symbiosum WAL-14163]
 gi|323503473|gb|EGB19301.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           symbiosum WAL-14673]
          Length = 193

 Score =  242 bits (618), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 110/193 (56%), Positives = 150/193 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+E T+RGERSYDI+SRLLKERI+F+  ++ D  A LI +QLLFLE+E+P K+I
Sbjct: 1   MSLVPYVIESTSRGERSYDIFSRLLKERIIFLGEEVTDTSAGLIVSQLLFLESEDPNKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG V+AG+AIYDTM +IK  +ST C G AASMG+ LL+ G KG RFALPNA +
Sbjct: 61  HLYINSPGGSVSAGLAIYDTMNYIKCDVSTICFGMAASMGAFLLAGGAKGKRFALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I+  A+ I++ K++LNEI   N G+ YE +E+  DRD+ M+A EA
Sbjct: 121 MIHQPSGGAQGQATEIQIVAEKILQTKKKLNEILAANTGQPYEVIERDTDRDNYMTAQEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++D+V+ S 
Sbjct: 181 MEYGLIDRVIASH 193


>gi|310820094|ref|YP_003952452.1| ATP-dependent CLP protease proteolytic subunit 1 [Stigmatella
           aurantiaca DW4/3-1]
 gi|309393166|gb|ADO70625.1| ATP-dependent Clp protease proteolytic subunit 1 [Stigmatella
           aurantiaca DW4/3-1]
          Length = 207

 Score =  242 bits (617), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 108/190 (56%), Positives = 155/190 (81%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+EQT+RGERSYDIYSRLLK+RIV +  +I+D ++  I +QLLFLE+E+P K+I+LY
Sbjct: 6   IPYVIEQTHRGERSYDIYSRLLKDRIVMLGTEIDDDVSNAIVSQLLFLESEDPDKDINLY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDTMQ++K P+ST C+GQAASMG++LL AG KG R++LP++RI++H
Sbjct: 66  INSPGGSVTAGLAIYDTMQYVKCPVSTICIGQAASMGAVLLLAGAKGKRYSLPSSRIMIH 125

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA+DIE  A++I++++ +LN++ VK+ G+  E VEK  DRD+ M A+E+  +
Sbjct: 126 QPLGGVRGQATDIEIQAKEILRMRAKLNDLIVKHTGQPLERVEKDTDRDYYMGATESKAY 185

Query: 199 GVVDKVLMSR 208
           G++D++   R
Sbjct: 186 GIIDEIQNPR 195


>gi|115374875|ref|ZP_01462148.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Stigmatella
           aurantiaca DW4/3-1]
 gi|115368093|gb|EAU67055.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Stigmatella
           aurantiaca DW4/3-1]
          Length = 204

 Score =  242 bits (617), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 108/190 (56%), Positives = 155/190 (81%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+EQT+RGERSYDIYSRLLK+RIV +  +I+D ++  I +QLLFLE+E+P K+I+LY
Sbjct: 3   IPYVIEQTHRGERSYDIYSRLLKDRIVMLGTEIDDDVSNAIVSQLLFLESEDPDKDINLY 62

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDTMQ++K P+ST C+GQAASMG++LL AG KG R++LP++RI++H
Sbjct: 63  INSPGGSVTAGLAIYDTMQYVKCPVSTICIGQAASMGAVLLLAGAKGKRYSLPSSRIMIH 122

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA+DIE  A++I++++ +LN++ VK+ G+  E VEK  DRD+ M A+E+  +
Sbjct: 123 QPLGGVRGQATDIEIQAKEILRMRAKLNDLIVKHTGQPLERVEKDTDRDYYMGATESKAY 182

Query: 199 GVVDKVLMSR 208
           G++D++   R
Sbjct: 183 GIIDEIQNPR 192


>gi|210615408|ref|ZP_03290535.1| hypothetical protein CLONEX_02751 [Clostridium nexile DSM 1787]
 gi|210150257|gb|EEA81266.1| hypothetical protein CLONEX_02751 [Clostridium nexile DSM 1787]
          Length = 193

 Score =  242 bits (617), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 110/193 (56%), Positives = 154/193 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++P V+EQT+RGERSYDIYSRLLKERI+F+  ++ D  A++I AQLLFLE E+P+K+I
Sbjct: 1   MSVIPYVIEQTSRGERSYDIYSRLLKERIIFLGEEVTDASASVIIAQLLFLEGEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG V+AG+AIYDTMQ+IK  +ST C+G AASMGS LLS G+KG R+ALPNA I
Sbjct: 61  HLYINSPGGSVSAGLAIYDTMQYIKCDVSTICIGMAASMGSFLLSGGKKGKRYALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++I+  A+ I+K +++LN I  +N G++ E+++   +RD+ MSA EA
Sbjct: 121 MIHQPLGGAQGQATEIQIAAEHILKTRQKLNTILAENTGQSLEKIQADTERDNFMSAQEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD+V+ S 
Sbjct: 181 KEYGLVDEVIASH 193


>gi|160936367|ref|ZP_02083736.1| hypothetical protein CLOBOL_01259 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440650|gb|EDP18388.1| hypothetical protein CLOBOL_01259 [Clostridium bolteae ATCC
           BAA-613]
          Length = 193

 Score =  242 bits (617), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 112/190 (58%), Positives = 151/190 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLLKERI+F+  ++ D  A+L+ AQLLFLE+E+P K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLKERIIFLGEEVNDVSASLVVAQLLFLESEDPGKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG V+AG AIYDTM +IK  +ST C+G AASMG+ LLS G KG RFALPNA I
Sbjct: 61  HLYINSPGGSVSAGFAIYDTMNYIKCDVSTICIGMAASMGAFLLSGGAKGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I+  A++I+K +++LNEI   N GK  E +E+  +RD+ MSA EA
Sbjct: 121 MIHQPSGGAKGQATEIKIVAENILKTRKKLNEILAANTGKPLEVIERDTERDNYMSALEA 180

Query: 196 CDWGVVDKVL 205
            ++G++D+++
Sbjct: 181 KEYGLIDEII 190


>gi|315641411|ref|ZP_07896485.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           italicus DSM 15952]
 gi|315482847|gb|EFU73369.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           italicus DSM 15952]
          Length = 194

 Score =  242 bits (617), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 108/193 (55%), Positives = 151/193 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQ++RGER+YDIYSRLLK+RI+ ++GQ+ D +A  I +QLLFL+A++ +K+I
Sbjct: 1   MNLIPTVIEQSSRGERAYDIYSRLLKDRIIMLSGQVTDDLANSIISQLLFLDAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG+AIYDTM F+K  + T  MG AASMGS LL+AG+KG RFALPNA I
Sbjct: 61  YLYINSPGGSVTAGLAIYDTMNFVKADVQTIVMGMAASMGSFLLTAGKKGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K + RLN I  +  G+  E +EK  DRD+ M+A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAARHILKTRERLNNILAERTGQPLEVIEKDTDRDNFMTAQEA 180

Query: 196 CDWGVVDKVLMSR 208
            D+G++D++L+++
Sbjct: 181 KDYGLIDQILVNK 193


>gi|77128443|ref|YP_113048.2| ATP-dependent Clp protease proteolytic subunit [Methylococcus
           capsulatus str. Bath]
 gi|83301431|sp|Q60BE8|CLPP2_METCA RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|66270664|gb|AAU93284.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylococcus
           capsulatus str. Bath]
          Length = 195

 Score =  242 bits (617), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 113/190 (59%), Positives = 155/190 (81%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P+V+EQ+ RGER++DIYSRLLKER++F+ GQ+ED+MA L+ AQLLFLE+ENP K+I LY
Sbjct: 1   MPIVIEQSARGERAFDIYSRLLKERVIFLVGQVEDYMANLVIAQLLFLESENPDKDIHLY 60

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG+VTAG+AIYDTMQFIKP +ST C+GQAASMG+LLL+ G  G R+ LP++RI++H
Sbjct: 61  INSPGGLVTAGLAIYDTMQFIKPDVSTLCVGQAASMGALLLAGGAAGKRYCLPHSRIMIH 120

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GGF GQASDI+ HA++I+ ++ RLN+I   + G+  E+++   DRD+ M   +A  +
Sbjct: 121 QPLGGFQGQASDIDIHAREILAVRDRLNKILAHHTGQPIEKIQIDTDRDNFMGGDDAVSY 180

Query: 199 GVVDKVLMSR 208
           G++DKVL  R
Sbjct: 181 GLIDKVLTHR 190


>gi|262037349|ref|ZP_06010814.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Leptotrichia
           goodfellowii F0264]
 gi|261748606|gb|EEY35980.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Leptotrichia
           goodfellowii F0264]
          Length = 189

 Score =  242 bits (617), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 108/186 (58%), Positives = 152/186 (81%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P+V+E   RGERSYDIYSRLLK+RI+F+ G++ED++A  I AQLLFL+A++ +K+I +YI
Sbjct: 4   PVVIENDGRGERSYDIYSRLLKDRIIFLGGEVEDNIANSIIAQLLFLDAQDKEKDIVMYI 63

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGGVVTAG+AIYDTM+ IK  +ST C+GQAASMG++LL++G KG R++LPN+R+++HQ
Sbjct: 64  NSPGGVVTAGLAIYDTMRHIKADVSTVCIGQAASMGAVLLASGAKGKRYSLPNSRVMIHQ 123

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           PSGG  GQA+DI+  A++I KIK+ LNEI  +  GK  EE+ +  +RD+ MS+ EA  +G
Sbjct: 124 PSGGARGQATDIQIQAKEIEKIKKTLNEILSEATGKPVEEIYRDTERDNFMSSEEALAYG 183

Query: 200 VVDKVL 205
           ++DK+L
Sbjct: 184 IIDKIL 189


>gi|220928259|ref|YP_002505168.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           cellulolyticum H10]
 gi|254763787|sp|B8I8F5|CLPP_CLOCE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|219998587|gb|ACL75188.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           cellulolyticum H10]
          Length = 194

 Score =  241 bits (616), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 107/193 (55%), Positives = 151/193 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQTNRGERSYDI+SRLL +RI+ ++ ++ D  A+LI AQ+L+LEA++P K+I
Sbjct: 1   MSLVPMVVEQTNRGERSYDIFSRLLNDRIIVLSDEVNDATASLIVAQMLYLEAQDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG V +G AIYDTMQ++K  +ST CMG AASMG+ LL+AGEKG RFALPN+ I
Sbjct: 61  QFYINSPGGSVASGFAIYDTMQYVKCDVSTICMGMAASMGAFLLAAGEKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+ HA++I++ + +LN+I  +  G+  +++EK  +RD  MSA EA
Sbjct: 121 MIHQPLGGARGQATDIKIHAENILRTRDKLNKILSERTGQPLDKIEKDTERDFFMSADEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D +++ R
Sbjct: 181 KAYGIIDDIMVRR 193


>gi|154506030|ref|ZP_02042768.1| hypothetical protein RUMGNA_03572 [Ruminococcus gnavus ATCC 29149]
 gi|153793529|gb|EDN75949.1| hypothetical protein RUMGNA_03572 [Ruminococcus gnavus ATCC 29149]
          Length = 193

 Score =  241 bits (616), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 112/190 (58%), Positives = 149/190 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLLKERI+F+  ++ D  A++I AQLLFLEA++P K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLKERIIFLGEEVNDVSASVIVAQLLFLEADDPNKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG+AIYDTMQ+IK  +ST C+G AASMG+ LLS G KG RFALPNA I
Sbjct: 61  QLYINSPGGSVTAGLAIYDTMQYIKCDVSTVCIGMAASMGAFLLSGGAKGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I   A+ I++ +++LNEI   N G+  E ++   +RD+ MSA EA
Sbjct: 121 MIHQPSGGAQGQATEISIAAEHILRTRQKLNEIMAANTGQPLETIKADTERDNFMSAEEA 180

Query: 196 CDWGVVDKVL 205
             +G++D+V+
Sbjct: 181 KAYGLIDEVI 190


>gi|42784300|ref|NP_981547.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           ATCC 10987]
 gi|67460499|sp|Q72XW9|CLPP2_BACC1 RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|42740231|gb|AAS44155.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus ATCC 10987]
          Length = 193

 Score =  241 bits (616), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 106/193 (54%), Positives = 152/193 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFLE+++P K+I
Sbjct: 1   MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +TAGMAIYDTMQFIKP +ST C+G AASMG+ LL+AGEKG R+ALPN+ +
Sbjct: 61  HLYINSPGGSITAGMAIYDTMQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN+I     G+  E +++  DRD+ M+A +A
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILFLREKLNQILADRTGQPLEVLQRDTDRDNFMTAEKA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++DK+  +R
Sbjct: 181 LEYGLIDKIFTNR 193


>gi|308462025|ref|XP_003093299.1| CRE-CLPP-1 protein [Caenorhabditis remanei]
 gi|308250366|gb|EFO94318.1| CRE-CLPP-1 protein [Caenorhabditis remanei]
          Length = 222

 Score =  241 bits (616), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 110/186 (59%), Positives = 150/186 (80%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V++   +GER+YDIYSRLL++RIV +   ++D +A+ + AQLLFL++E+ +K I +Y
Sbjct: 27  IPFVIDNEGKGERTYDIYSRLLRDRIVCLMTPVDDFIASALIAQLLFLQSESGKKPIHMY 86

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDTMQ I  P++T+ +GQA+SMGSLLL+AGEKGMR ALPNARI++H
Sbjct: 87  INSPGGSVTAGLAIYDTMQMISAPVATWVIGQASSMGSLLLAAGEKGMRSALPNARIMVH 146

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  G  SDI   A++I ++K+RLNEIYV + G +Y+E+E+TLDRD  MSA EA  +
Sbjct: 147 QPSGGAQGTCSDIVIRAEEITRLKKRLNEIYVHHTGISYDEIERTLDRDRFMSAQEALKF 206

Query: 199 GVVDKV 204
           G+VDK+
Sbjct: 207 GLVDKI 212


>gi|30023185|ref|NP_834816.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           ATCC 14579]
 gi|47567358|ref|ZP_00238071.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus G9241]
 gi|49481130|ref|YP_039138.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|52140414|ref|YP_086415.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           E33L]
 gi|75759660|ref|ZP_00739744.1| ATP-dependent endopeptidase clp proteolytic subunit clpP [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|118480187|ref|YP_897338.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis str. Al Hakam]
 gi|190015186|ref|YP_001966706.1| ATP-dependent Clp protease, proteolytic subunit [Bacillus cereus]
 gi|190015451|ref|YP_001967031.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus]
 gi|190015619|ref|YP_001967344.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus]
 gi|196032944|ref|ZP_03100357.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus W]
 gi|196039610|ref|ZP_03106915.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus NVH0597-99]
 gi|196045601|ref|ZP_03112831.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus 03BB108]
 gi|206970378|ref|ZP_03231331.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus AH1134]
 gi|208702014|ref|YP_002267309.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus H3081.97]
 gi|217956873|ref|YP_002335967.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           AH187]
 gi|217962631|ref|YP_002341203.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           AH187]
 gi|218231097|ref|YP_002369926.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           B4264]
 gi|218848317|ref|YP_002455085.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus AH820]
 gi|218900271|ref|YP_002448682.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus G9842]
 gi|218906323|ref|YP_002454157.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus AH820]
 gi|222098603|ref|YP_002532661.1| ATP-dependent clp protease proteolytic subunit [Bacillus cereus Q1]
 gi|225867113|ref|YP_002752491.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus 03BB102]
 gi|228903623|ref|ZP_04067744.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis IBL 4222]
 gi|228910978|ref|ZP_04074786.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis IBL 200]
 gi|228917753|ref|ZP_04081294.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228923875|ref|ZP_04087152.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228930150|ref|ZP_04093159.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228936434|ref|ZP_04099232.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228942286|ref|ZP_04104825.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228948867|ref|ZP_04111142.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228955388|ref|ZP_04117393.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228961377|ref|ZP_04122991.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228968242|ref|ZP_04129240.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228975215|ref|ZP_04135773.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228981853|ref|ZP_04142148.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis Bt407]
 gi|228988373|ref|ZP_04148465.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|229072597|ref|ZP_04205799.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           F65185]
 gi|229082356|ref|ZP_04214819.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock4-2]
 gi|229087619|ref|ZP_04219749.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock3-44]
 gi|229094242|ref|ZP_04225321.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock3-42]
 gi|229112558|ref|ZP_04242095.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock1-15]
 gi|229124654|ref|ZP_04253836.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           95/8201]
 gi|229130395|ref|ZP_04259353.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           BDRD-Cer4]
 gi|229147676|ref|ZP_04276019.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           BDRD-ST24]
 gi|229153305|ref|ZP_04281483.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           m1550]
 gi|229158714|ref|ZP_04286772.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           ATCC 4342]
 gi|229164770|ref|ZP_04292604.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           R309803]
 gi|229181405|ref|ZP_04308733.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           172560W]
 gi|229187359|ref|ZP_04314502.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           BGSC 6E1]
 gi|229193390|ref|ZP_04320339.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           ATCC 10876]
 gi|254724422|ref|ZP_05186206.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
           str. A1055]
 gi|296505568|ref|YP_003667268.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis BMB171]
 gi|301056609|ref|YP_003794820.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
           CI]
 gi|67460463|sp|Q631K2|CLPP2_BACCZ RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|67460476|sp|Q6HBD8|CLPP2_BACHK RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|67460524|sp|Q815J6|CLPP2_BACCR RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|17981472|gb|AAL51030.1|AF454757_1 ClpP1 [Bacillus thuringiensis]
 gi|29898745|gb|AAP12017.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           ATCC 14579]
 gi|47555979|gb|EAL14317.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus G9241]
 gi|49332686|gb|AAT63332.1| ATP-dependent Clp protease, proteolytic subunit (endopeptidase Clp)
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|51973883|gb|AAU15433.1| ATP-dependent Clp protease, proteolytic subunit (endopeptidase Clp)
           [Bacillus cereus E33L]
 gi|74492856|gb|EAO55988.1| ATP-dependent endopeptidase clp proteolytic subunit clpP [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|116584526|gb|ABK00643.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus]
 gi|116584862|gb|ABK00977.1| ATP-dependent Clp protease, proteolytic subunit [Bacillus cereus]
 gi|116585132|gb|ABK01241.1| ATP-dependent Clp protease, proteolytic subunit [Bacillus cereus]
 gi|118419412|gb|ABK87831.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bacillus
           thuringiensis str. Al Hakam]
 gi|195994373|gb|EDX58328.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus W]
 gi|196023432|gb|EDX62109.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus 03BB108]
 gi|196029770|gb|EDX68372.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus NVH0597-99]
 gi|206734955|gb|EDZ52124.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus AH1134]
 gi|208657869|gb|ACI30239.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus H3081.97]
 gi|217064081|gb|ACJ78331.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus AH187]
 gi|217068436|gb|ACJ82684.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus AH187]
 gi|218159054|gb|ACK59046.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus B4264]
 gi|218536274|gb|ACK88672.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus AH820]
 gi|218540368|gb|ACK92764.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus AH820]
 gi|218541218|gb|ACK93612.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus G9842]
 gi|221242662|gb|ACM15372.1| ATP-dependent Clp protease, proteolytic subunit (endopeptidase Clp)
           [Bacillus cereus Q1]
 gi|225789761|gb|ACO29978.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus 03BB102]
 gi|228590104|gb|EEK47974.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           ATCC 10876]
 gi|228596063|gb|EEK53740.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           BGSC 6E1]
 gi|228601980|gb|EEK59473.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           172560W]
 gi|228618700|gb|EEK75692.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           R309803]
 gi|228624698|gb|EEK81467.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           ATCC 4342]
 gi|228629909|gb|EEK86560.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           m1550]
 gi|228635689|gb|EEK92176.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           BDRD-ST24]
 gi|228653094|gb|EEL08974.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           BDRD-Cer4]
 gi|228658805|gb|EEL14463.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           95/8201]
 gi|228670938|gb|EEL26245.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock1-15]
 gi|228689234|gb|EEL43056.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock3-42]
 gi|228695735|gb|EEL48590.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock3-44]
 gi|228700788|gb|EEL53311.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock4-2]
 gi|228710573|gb|EEL62546.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           F65185]
 gi|228771354|gb|EEM19828.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228777965|gb|EEM26237.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis Bt407]
 gi|228784494|gb|EEM32515.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228791415|gb|EEM39019.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228798262|gb|EEM45261.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228804180|gb|EEM50794.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228810829|gb|EEM57175.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228817330|gb|EEM63416.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228823266|gb|EEM69100.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228829435|gb|EEM75063.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228835674|gb|EEM81038.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228841990|gb|EEM87096.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228848633|gb|EEM93479.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis IBL 200]
 gi|228856052|gb|EEN00591.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis IBL 4222]
 gi|296326620|gb|ADH09548.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis BMB171]
 gi|300378778|gb|ADK07682.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           biovar anthracis str. CI]
 gi|324329059|gb|ADY24319.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar finitimus YBT-020]
 gi|326942942|gb|AEA18838.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 193

 Score =  241 bits (616), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 105/193 (54%), Positives = 153/193 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFLE+++P+K+I
Sbjct: 1   MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG +TAGMAIYDTMQFIKP +ST C+G AASMG+ LL+AGEKG R+ALPN+ +
Sbjct: 61  HIYINSPGGSITAGMAIYDTMQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN+I     G+  E +++  DRD+ M+A +A
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILFLREKLNQILADRTGQPLEVLQRDTDRDNFMTAEKA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++DK+  +R
Sbjct: 181 LEYGLIDKIFTNR 193


>gi|283955378|ref|ZP_06372877.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. jejuni 414]
 gi|283793138|gb|EFC31908.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. jejuni 414]
          Length = 194

 Score =  241 bits (616), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 109/188 (57%), Positives = 149/188 (79%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            +P V+E+++RGERSYDIYSRLLK+RI+ ++G+I D +A+ I AQLLFLEAE+P K+I L
Sbjct: 2   FIPYVIEKSSRGERSYDIYSRLLKDRIIMLSGEIHDELASSIVAQLLFLEAEDPAKDIYL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+T+G +IYDTM +IKP + T C+GQAASMG+ LLS G +G RFALPN+RI++
Sbjct: 62  YINSPGGVITSGFSIYDTMNYIKPNVCTICIGQAASMGAFLLSCGAEGKRFALPNSRIMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+++K  LN+I  KN  +   ++ K  +RD  MSA EA +
Sbjct: 122 HQPLGGARGQATDIEIQAKEILRLKTILNDILAKNTKQKVAKIAKDTERDFFMSAQEAKE 181

Query: 198 WGVVDKVL 205
           +G++DKVL
Sbjct: 182 YGLIDKVL 189


>gi|210621780|ref|ZP_03292809.1| hypothetical protein CLOHIR_00754 [Clostridium hiranonis DSM 13275]
 gi|210154544|gb|EEA85550.1| hypothetical protein CLOHIR_00754 [Clostridium hiranonis DSM 13275]
          Length = 195

 Score =  241 bits (616), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 110/193 (56%), Positives = 150/193 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP VVEQT RGERSYDI+SRLLK+RI+F+  ++ D  A LI AQLLFLEAE+P K+I
Sbjct: 1   MALVPYVVEQTGRGERSYDIFSRLLKDRIIFLCDEVNDDTAGLIVAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +TAGMAIYDTM +IKP +ST C+G AASMG+ LLS+G KG R+ALPN+ I
Sbjct: 61  HLYINSPGGSITAGMAIYDTMNYIKPDVSTICIGMAASMGAFLLSSGAKGKRYALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+++K +LN+I  +N G+  E++    +RD+ M A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIRAKRIIRMKEKLNQILSENTGQPLEKIMADTERDNFMEADEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D+V+ ++
Sbjct: 181 LAYGLIDEVITNK 193


>gi|116494470|ref|YP_806204.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus casei
           ATCC 334]
 gi|191637855|ref|YP_001987021.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus casei
           BL23]
 gi|227535562|ref|ZP_03965611.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|239631219|ref|ZP_04674250.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|301065981|ref|YP_003788004.1| protease subunit of ATP-dependent Clp protease [Lactobacillus casei
           str. Zhang]
 gi|122264104|sp|Q03AL0|CLPP_LACC3 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706456|sp|B3WCR2|CLPP_LACCB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|116104620|gb|ABJ69762.1| ATP-dependent Clp protease proteolytic subunit ClpP [Lactobacillus
           casei ATCC 334]
 gi|190712157|emb|CAQ66163.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           [Lactobacillus casei BL23]
 gi|227186809|gb|EEI66876.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|239525684|gb|EEQ64685.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|300438388|gb|ADK18154.1| Protease subunit of ATP-dependent Clp protease [Lactobacillus casei
           str. Zhang]
 gi|327381924|gb|AEA53400.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus casei
           LC2W]
 gi|327385084|gb|AEA56558.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus casei
           BD-II]
          Length = 196

 Score =  241 bits (616), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 106/191 (55%), Positives = 151/191 (79%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP VVEQT+RGER+YDIYSRLLK+RI+ ++G++ D MA  + AQLLFL+A++ +K+I L
Sbjct: 2   LVPTVVEQTSRGERAYDIYSRLLKDRIIMLSGEVNDQMANSVIAQLLFLDAQDSEKDIYL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+T+G+A+ DTM FIK  + T  +G AASM S+LL+ G KG RFALPN+ IL+
Sbjct: 62  YINSPGGVITSGLAMLDTMNFIKSDVQTIAIGMAASMASVLLAGGTKGKRFALPNSTILI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQ ++IE  A++I+K +R++N+I     G+T E+++K  +RDH MSA EA D
Sbjct: 122 HQPSGGAQGQQTEIEIAAEEILKTRRKMNQILADATGQTIEQIKKDTERDHYMSAQEAKD 181

Query: 198 WGVVDKVLMSR 208
           +G++D +L+++
Sbjct: 182 YGLIDDILVNK 192


>gi|325264756|ref|ZP_08131485.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           sp. D5]
 gi|324030048|gb|EGB91334.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           sp. D5]
          Length = 193

 Score =  241 bits (616), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 112/193 (58%), Positives = 154/193 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLLKERI+F+  ++ D  A++I AQLLFLEA++P K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLKERIIFLGEEVNDVSASVIVAQLLFLEADDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VT+G+AIYDTMQ+IK  +ST C+G AASMG+ LLS G+KG RFALPNA I
Sbjct: 61  QLYINSPGGSVTSGLAIYDTMQYIKCDVSTVCIGMAASMGAFLLSGGKKGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I   A+ I+KI+ +LN+I  +N G++ + ++   +RD+ MSA EA
Sbjct: 121 MIHQPSGGAQGQATEIHIVAEHILKIRHKLNQILAENTGQSLDVIKVDTERDNYMSALEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++D+V+ S 
Sbjct: 181 KEYGLIDEVIASH 193


>gi|319955770|ref|YP_004167033.1| ATP-dependent clp protease proteolytic subunit clpp [Nitratifractor
           salsuginis DSM 16511]
 gi|319418174|gb|ADV45284.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nitratifractor
           salsuginis DSM 16511]
          Length = 196

 Score =  241 bits (616), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 106/190 (55%), Positives = 152/190 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P V+EQT RGERSYDIYSRLLK+RI+ ++G++ D +A+ I AQLLFLEA++P K+I
Sbjct: 1   MSYIPYVIEQTGRGERSYDIYSRLLKDRIIMLSGEVNDAVASSIVAQLLFLEAQDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGGV+T+G +IYDTM +IKP +ST C+GQAASMG+ LL+ G +G R+ALP++RI
Sbjct: 61  YFYINSPGGVITSGFSIYDTMNYIKPDVSTICIGQAASMGAFLLACGAEGKRYALPSSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI   A++I+++K  LN+I  +  GK+ +++EK  +RD+ MSA EA
Sbjct: 121 MIHQPLGGAQGQATDIAIQAKEILRMKTYLNKILAEKTGKSVKKIEKDTERDYFMSAEEA 180

Query: 196 CDWGVVDKVL 205
            ++G++DKVL
Sbjct: 181 QEYGLIDKVL 190


>gi|307718289|ref|YP_003873821.1| ATP-dependent Clp protease proteolytic subunit [Spirochaeta
           thermophila DSM 6192]
 gi|306532014|gb|ADN01548.1| ATP-dependent Clp protease proteolytic subunit [Spirochaeta
           thermophila DSM 6192]
          Length = 206

 Score =  241 bits (616), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 109/189 (57%), Positives = 151/189 (79%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+V+EQT  GERSYDIYSRLLK+RIVF+ G+I D  A L+ AQLLFLE+++P+K+IS+
Sbjct: 8   LVPIVIEQTGMGERSYDIYSRLLKDRIVFIDGEINDLTADLVVAQLLFLESQDPEKDISV 67

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YIN+PGG VTAG+AIYDTMQ++KP + T C+GQAASMG+LLL+AG  G R ALP++RIL+
Sbjct: 68  YINTPGGSVTAGLAIYDTMQYVKPDVQTICLGQAASMGALLLTAGTPGKRLALPSSRILI 127

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DI   A+++V+IK+ L   + ++ G+  EEV + L+RD+ M+  EA  
Sbjct: 128 HQPWGGVQGQATDISIQAREMVRIKKLLIHYFARHTGRPEEEVAQDLERDYYMTPEEAKA 187

Query: 198 WGVVDKVLM 206
           +G++D +L+
Sbjct: 188 YGLIDDILI 196


>gi|32476643|ref|NP_869637.1| ATP-dependent Clp protease proteolytic subunit [Rhodopirellula
           baltica SH 1]
 gi|67460512|sp|Q7UK66|CLPP2_RHOBA RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|32447189|emb|CAD77015.1| ATP-dependent clp protease proteolytic subunit [Rhodopirellula
           baltica SH 1]
 gi|327540248|gb|EGF26837.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Rhodopirellula baltica WH47]
          Length = 195

 Score =  241 bits (615), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 104/192 (54%), Positives = 152/192 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++P VVE   R ER+YDIYSRLLK+RI+F+  Q++D ++  + AQ+LFL+A++P+K+I
Sbjct: 1   MPVIPYVVESNGREERTYDIYSRLLKDRIIFLGQQVDDQISNALVAQMLFLQADDPKKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG +TAGMAIYDTMQF+   ++T+C+GQAASMG++LL+AG KG RFALPNARI
Sbjct: 61  HMYINSPGGSITAGMAIYDTMQFVSCDVATYCIGQAASMGAVLLTAGAKGKRFALPNARI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP  G  G A ++E H  ++ +IK+R+NEI +++ G + E++E+  DRD  MSA EA
Sbjct: 121 MIHQPLAGMQGTAREVEIHVAELRRIKQRMNEIMIEHTGHSLEKIEEDTDRDRFMSADEA 180

Query: 196 CDWGVVDKVLMS 207
           C +G++DKV+ S
Sbjct: 181 CSYGLIDKVVKS 192


>gi|301784789|ref|XP_002927807.1| PREDICTED: putative ATP-dependent Clp protease proteolytic subunit,
           mitochondrial-like [Ailuropoda melanoleuca]
          Length = 273

 Score =  241 bits (615), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 113/191 (59%), Positives = 155/191 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           L L+P+VVEQT RGER+YDIYSRLL+ERIV V G I+D +A+L+ AQLLFL++E+ +K I
Sbjct: 52  LPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPI 111

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG+VT+G+AIYDTMQ+I  PI T+C+GQAASMGSLLL+AG  GMR +LPN+RI
Sbjct: 112 HMYINSPGGMVTSGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRI 171

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+DI   A++I+K+K++L  IY K+  ++   +E  ++RD  MS  EA
Sbjct: 172 MIHQPSGGARGQATDIAIQAEEIMKLKKQLYGIYAKHTKQSLRVIESAMERDRYMSPMEA 231

Query: 196 CDWGVVDKVLM 206
            ++G++DKVL+
Sbjct: 232 QEFGILDKVLV 242


>gi|295695312|ref|YP_003588550.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           tusciae DSM 2912]
 gi|295410914|gb|ADG05406.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           tusciae DSM 2912]
          Length = 196

 Score =  241 bits (615), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 112/197 (56%), Positives = 155/197 (78%), Gaps = 1/197 (0%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMV+EQ++RGER+YDIYSRLLK+RI+F+   I+D +A L+ AQLLFL AE+ +K+I
Sbjct: 1   MSLVPMVIEQSSRGERAYDIYSRLLKDRIIFLGTGIDDIVANLVVAQLLFLAAEDDKKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +TAGMAIYDTMQ+IKP +ST C+G AASMG+ LL+AG KG RFALPN+ I
Sbjct: 61  RLYINSPGGSITAGMAIYDTMQYIKPDVSTVCIGMAASMGAFLLAAGTKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+ HA  I++ K ++N I  +  G+  E++E+  DRD+ M A EA
Sbjct: 121 MIHQPLGGVRGQAADIKIHADWILRTKDKINRILSERTGQPLEKIERDTDRDNFMDAEEA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
             +G++D+V+ S +D++
Sbjct: 181 KAYGLIDEVI-SPVDLK 196


>gi|283955633|ref|ZP_06373126.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. jejuni 1336]
 gi|283792858|gb|EFC31634.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. jejuni 1336]
          Length = 194

 Score =  241 bits (615), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 109/188 (57%), Positives = 148/188 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            +P V+E+++RGERSYDIYSRLLK+RI+ ++G+I D +A  I AQLLFLEAE+P K+I L
Sbjct: 2   FIPYVIEKSSRGERSYDIYSRLLKDRIIMLSGEIHDELAASIVAQLLFLEAEDPTKDIYL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+T+G +IYDTM +IKP + T C+GQAASMG+ LLS G +G RFALPN+RI++
Sbjct: 62  YINSPGGVITSGFSIYDTMNYIKPDVCTICIGQAASMGAFLLSCGAEGKRFALPNSRIMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+++K  LN+I  KN  +   ++ K  +RD  MSA EA +
Sbjct: 122 HQPLGGARGQATDIEIQAKEILRLKTILNDILAKNTKQKVTKIAKDTERDFFMSAQEAKE 181

Query: 198 WGVVDKVL 205
           +G++DKVL
Sbjct: 182 YGLIDKVL 189


>gi|327480673|gb|AEA83983.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           stutzeri DSM 4166]
          Length = 192

 Score =  241 bits (615), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 115/188 (61%), Positives = 152/188 (80%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MV+EQ+ RGER+YDIYSRLLKER++F+ GQ+ED+MA LI AQLLFLEAENP+K+I LYIN
Sbjct: 1   MVIEQSARGERAYDIYSRLLKERVIFMVGQVEDYMANLIVAQLLFLEAENPEKDIHLYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+LLL+ G  G R+ LP++R+++HQP
Sbjct: 61  SPGGSVTAGMSIYDTMQFIKPNVSTICIGQACSMGALLLAGGAAGKRYCLPHSRMMIHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            GGF GQASDIE HA++I+ I+ RLN++   + G+  + + +  DRD+ MS  EA  +G+
Sbjct: 121 LGGFQGQASDIEIHAREILTIRERLNKVLAHHTGQPMDVIARDTDRDNFMSGEEAVKYGL 180

Query: 201 VDKVLMSR 208
           +D+VL  R
Sbjct: 181 IDQVLTQR 188


>gi|310829091|ref|YP_003961448.1| hypothetical protein ELI_3526 [Eubacterium limosum KIST612]
 gi|308740825|gb|ADO38485.1| hypothetical protein ELI_3526 [Eubacterium limosum KIST612]
          Length = 195

 Score =  241 bits (615), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 108/193 (55%), Positives = 150/193 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMV+EQT RGERS+DIYSRLLKERI+F+ G+I D  ++LI AQL+FLEA+NP K+I
Sbjct: 3   MNLVPMVIEQTGRGERSFDIYSRLLKERIIFLDGEINDTTSSLIVAQLIFLEADNPDKDI 62

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG +T+G AIYDTM FIK  +ST C+G AASMG+ LL+AG KG R ALPN+ I
Sbjct: 63  EMYINSPGGSITSGFAIYDTMNFIKCDVSTMCVGMAASMGAFLLAAGAKGKRKALPNSEI 122

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQ+ D+E +A+ ++K + +LNEI  +  G+  + + +  DRD+ MSA EA
Sbjct: 123 MIHQPLGGAQGQSVDVEIYAKRLIKTREKLNEILSEKTGQPIDVIARDTDRDNFMSAEEA 182

Query: 196 CDWGVVDKVLMSR 208
            ++G++D+++ SR
Sbjct: 183 LEYGLIDQIVSSR 195


>gi|281339765|gb|EFB15349.1| hypothetical protein PANDA_017639 [Ailuropoda melanoleuca]
          Length = 272

 Score =  241 bits (615), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 113/191 (59%), Positives = 155/191 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           L L+P+VVEQT RGER+YDIYSRLL+ERIV V G I+D +A+L+ AQLLFL++E+ +K I
Sbjct: 52  LPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPI 111

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG+VT+G+AIYDTMQ+I  PI T+C+GQAASMGSLLL+AG  GMR +LPN+RI
Sbjct: 112 HMYINSPGGMVTSGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRI 171

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+DI   A++I+K+K++L  IY K+  ++   +E  ++RD  MS  EA
Sbjct: 172 MIHQPSGGARGQATDIAIQAEEIMKLKKQLYGIYAKHTKQSLRVIESAMERDRYMSPMEA 231

Query: 196 CDWGVVDKVLM 206
            ++G++DKVL+
Sbjct: 232 QEFGILDKVLV 242


>gi|163942836|ref|YP_001647720.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           weihenstephanensis KBAB4]
 gi|228993855|ref|ZP_04153759.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           pseudomycoides DSM 12442]
 gi|228999881|ref|ZP_04159453.1| ATP-dependent Clp protease proteolytic subunit [Bacillus mycoides
           Rock3-17]
 gi|229007435|ref|ZP_04165032.1| ATP-dependent Clp protease proteolytic subunit [Bacillus mycoides
           Rock1-4]
 gi|229062796|ref|ZP_04200101.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           AH603]
 gi|229135952|ref|ZP_04264713.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           BDRD-ST196]
 gi|229169852|ref|ZP_04297548.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           AH621]
 gi|163865033|gb|ABY46092.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           weihenstephanensis KBAB4]
 gi|228613566|gb|EEK70695.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           AH621]
 gi|228647494|gb|EEL03568.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           BDRD-ST196]
 gi|228716556|gb|EEL68259.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           AH603]
 gi|228753823|gb|EEM03264.1| ATP-dependent Clp protease proteolytic subunit [Bacillus mycoides
           Rock1-4]
 gi|228759823|gb|EEM08797.1| ATP-dependent Clp protease proteolytic subunit [Bacillus mycoides
           Rock3-17]
 gi|228765911|gb|EEM14561.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           pseudomycoides DSM 12442]
          Length = 193

 Score =  241 bits (615), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 105/193 (54%), Positives = 152/193 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFLE+++P+K+I
Sbjct: 1   MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG +TAGMAIYDTMQFIKP +ST C+G AASMG+ LL+AGEKG R+ALPN+ +
Sbjct: 61  HIYINSPGGSITAGMAIYDTMQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN+I     G+  E +++  DRD+ M+A  A
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILFLREKLNQILADRTGQPLEVLQRDTDRDNFMTAERA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++DK+  +R
Sbjct: 181 LEYGLIDKIFTNR 193


>gi|57237197|ref|YP_178209.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           jejuni RM1221]
 gi|86149593|ref|ZP_01067823.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|86151504|ref|ZP_01069719.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. jejuni 260.94]
 gi|86153638|ref|ZP_01071841.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|88597431|ref|ZP_01100666.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. jejuni 84-25]
 gi|148926357|ref|ZP_01810041.1| ATP-dependent clp protease proteolytic subunit [Campylobacter
           jejuni subsp. jejuni CG8486]
 gi|153951283|ref|YP_001397440.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           jejuni subsp. doylei 269.97]
 gi|157414501|ref|YP_001481757.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           jejuni subsp. jejuni 81116]
 gi|205356561|ref|ZP_03223324.1| ATP-dependent CLp protease proteolytic subunit [Campylobacter
           jejuni subsp. jejuni CG8421]
 gi|218561871|ref|YP_002343650.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|315123791|ref|YP_004065795.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           jejuni subsp. jejuni ICDCCJ07001]
 gi|9297087|sp|P54413|CLPP_CAMJE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|67460171|sp|Q5HWX6|CLPP_CAMJR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166201811|sp|A7H1R0|CLPP_CAMJD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|172047014|sp|A8FJZ3|CLPP_CAMJ8 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|57166001|gb|AAW34780.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni RM1221]
 gi|85839861|gb|EAQ57120.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|85841851|gb|EAQ59098.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. jejuni 260.94]
 gi|85842599|gb|EAQ59811.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|88190492|gb|EAQ94466.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. jejuni 84-25]
 gi|112359577|emb|CAL34361.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|145844749|gb|EDK21854.1| ATP-dependent clp protease proteolytic subunit [Campylobacter
           jejuni subsp. jejuni CG8486]
 gi|152938729|gb|ABS43470.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. doylei 269.97]
 gi|157385465|gb|ABV51780.1| ATP-dependent clp protease proteolytic subunit [Campylobacter
           jejuni subsp. jejuni 81116]
 gi|205345566|gb|EDZ32206.1| ATP-dependent CLp protease proteolytic subunit [Campylobacter
           jejuni subsp. jejuni CG8421]
 gi|284925484|gb|ADC27836.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           jejuni subsp. jejuni IA3902]
 gi|307747143|gb|ADN90413.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           jejuni subsp. jejuni M1]
 gi|315017513|gb|ADT65606.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           jejuni subsp. jejuni ICDCCJ07001]
 gi|315057629|gb|ADT71958.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           jejuni subsp. jejuni S3]
 gi|315928124|gb|EFV07442.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. jejuni DFVF1099]
 gi|315930200|gb|EFV09315.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. jejuni 305]
 gi|315931999|gb|EFV10952.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. jejuni 327]
          Length = 194

 Score =  241 bits (614), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 109/188 (57%), Positives = 148/188 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            +P V+E+++RGERSYDIYSRLLK+RI+ ++G+I D +A  I AQLLFLEAE+P K+I L
Sbjct: 2   FIPYVIEKSSRGERSYDIYSRLLKDRIIMLSGEIHDELAASIVAQLLFLEAEDPTKDIYL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+T+G +IYDTM +IKP + T C+GQAASMG+ LLS G +G RFALPN+RI++
Sbjct: 62  YINSPGGVITSGFSIYDTMNYIKPDVCTICIGQAASMGAFLLSCGAEGKRFALPNSRIMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+++K  LN+I  KN  +   ++ K  +RD  MSA EA +
Sbjct: 122 HQPLGGARGQATDIEIQAKEILRLKTILNDILAKNTKQKVAKIAKDTERDFFMSAQEAKE 181

Query: 198 WGVVDKVL 205
           +G++DKVL
Sbjct: 182 YGLIDKVL 189


>gi|297737943|emb|CBI27144.3| unnamed protein product [Vitis vinifera]
          Length = 209

 Score =  241 bits (614), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 106/188 (56%), Positives = 149/188 (79%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MV+E ++RGER+YDI+SRLLKERIV + G I D  A ++ AQLLFLE+ENP K I +Y+N
Sbjct: 1   MVIEHSSRGERAYDIFSRLLKERIVCINGPISDDTAHVVVAQLLFLESENPSKPIHMYLN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGG V+AG+AIYDTMQ+I+ P++T C+GQAASMGSLLL+AG KG R ALPNA I++HQP
Sbjct: 61  SPGGAVSAGLAIYDTMQYIRSPVNTICLGQAASMGSLLLAAGAKGERRALPNATIMIHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
           SGG+SGQA D+  H + I+++   LN +Y K+ G++ + ++K +DRD+ M+  EA ++G+
Sbjct: 121 SGGYSGQAKDMTIHTKQIIRVWDSLNALYAKHTGQSLDIIQKNMDRDYFMTPEEAKEFGI 180

Query: 201 VDKVLMSR 208
           +D+V+  R
Sbjct: 181 IDEVIDQR 188


>gi|299755201|ref|XP_001828495.2| ATP-dependent Clp protease proteolytic subunit [Coprinopsis cinerea
           okayama7#130]
 gi|298411115|gb|EAU93328.2| ATP-dependent Clp protease proteolytic subunit [Coprinopsis cinerea
           okayama7#130]
          Length = 254

 Score =  241 bits (614), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 119/210 (56%), Positives = 153/210 (72%), Gaps = 7/210 (3%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
           SE     LVPMV+EQT RGERSYDI+SRLL+ER++ + G I D  +TL+ AQLLFLEAE+
Sbjct: 39  SEPTQSNLVPMVIEQTGRGERSYDIFSRLLRERVIMLHGPIRDTDSTLVVAQLLFLEAED 98

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
             K I LYINSPGG VTAG+AIYDTMQ++  PI T+ +G AASMGSLLL+AG KG R  L
Sbjct: 99  STKPIHLYINSPGGSVTAGLAIYDTMQYVSAPIHTYGLGLAASMGSLLLAAGAKGRRHCL 158

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYE-------EVEKT 183
           PNA I++HQPSGG SGQA+DI  HA++I++I++ L  IY ++C K  E         E  
Sbjct: 159 PNASIMIHQPSGGASGQATDIAIHAKEILRIRQLLTGIYQRHCAKEGETEAAGLKRFETA 218

Query: 184 LDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
           L+RD+ M+A EA ++G+VD +L  R  +EE
Sbjct: 219 LERDYYMTAQEALEFGIVDGILEKRPPLEE 248


>gi|255284021|ref|ZP_05348576.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bryantella
           formatexigens DSM 14469]
 gi|255265474|gb|EET58679.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bryantella
           formatexigens DSM 14469]
          Length = 194

 Score =  241 bits (614), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 113/193 (58%), Positives = 149/193 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP V+EQT+RGERSYDIYSRLLK+RI+F+  ++ D  A LI AQLLFLE+E+P K+I
Sbjct: 1   MSFVPYVIEQTSRGERSYDIYSRLLKDRIIFLGEEVTDVSANLIVAQLLFLESEDPAKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG V+AG AIYDTMQ+IK  +ST CMG AASMG+ LL+ G KG RFALPNA+I
Sbjct: 61  QLYINSPGGSVSAGWAIYDTMQYIKCDVSTICMGMAASMGAFLLAGGAKGKRFALPNAQI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQASDI+  A++I+K ++RLNE    N G+  + +E   +RD+ M+A EA
Sbjct: 121 MIHQPSGGAKGQASDIKIVAEEILKSRKRLNEYLAANTGQPIDVIEADTERDNYMTAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D V+ +R
Sbjct: 181 KAYGLIDAVIANR 193


>gi|184154836|ref|YP_001843176.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           fermentum IFO 3956]
 gi|227514403|ref|ZP_03944452.1| endopeptidase Clp [Lactobacillus fermentum ATCC 14931]
 gi|260663135|ref|ZP_05864027.1| Clp protease [Lactobacillus fermentum 28-3-CHN]
 gi|226706457|sp|B2GAL4|CLPP_LACF3 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|183226180|dbj|BAG26696.1| endopeptidase Clp proteolytic subunit [Lactobacillus fermentum IFO
           3956]
 gi|227087269|gb|EEI22581.1| endopeptidase Clp [Lactobacillus fermentum ATCC 14931]
 gi|260552327|gb|EEX25378.1| Clp protease [Lactobacillus fermentum 28-3-CHN]
          Length = 196

 Score =  241 bits (614), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 107/193 (55%), Positives = 153/193 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQ++RGER+YDIYSRLLK+RI+ ++G IED+MA  I AQLLFL+A++  K+I
Sbjct: 1   MNLVPTVIEQSSRGERAYDIYSRLLKDRIIMLSGPIEDNMANSIVAQLLFLDAQDSTKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVT+GMAIYDTM FIK  + T  +G AASM S+L+S+G KG RF LP++ +
Sbjct: 61  YLYINSPGGVVTSGMAIYDTMNFIKSDVQTIVIGMAASMASVLVSSGTKGKRFGLPHSTV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQ ++I+  A++I+K ++ +NEI  KN G+++E+VE+  +RDH ++A EA
Sbjct: 121 MIHQPSGGAQGQQTEIQIAAEEILKTRKMINEILAKNSGQSFEQVEQDTERDHYLTAQEA 180

Query: 196 CDWGVVDKVLMSR 208
            D+G++D V+ S 
Sbjct: 181 VDYGLLDGVMDSN 193


>gi|32266066|ref|NP_860098.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter
           hepaticus ATCC 51449]
 gi|60389734|sp|Q7VIN7|CLPP_HELHP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|32262115|gb|AAP77164.1| endopeptidase ClpP [Helicobacter hepaticus ATCC 51449]
          Length = 196

 Score =  241 bits (614), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 107/187 (57%), Positives = 148/187 (79%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+E+T RGERSYDIYSRLLK+RI+ ++G+I DH+A+ I AQLLFLEAE+P+K+I+ Y
Sbjct: 5   IPYVIERTGRGERSYDIYSRLLKDRIILLSGEINDHIASSIVAQLLFLEAEDPEKDINFY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGV+T+  +IYDTM +I   IST C+GQAAS G+ LLS+G KG RF+LPN+RI++H
Sbjct: 65  INSPGGVITSAFSIYDTMNYIHSDISTICIGQAASAGAFLLSSGTKGKRFSLPNSRIMIH 124

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA+DIE  A++I+++K+ LNEI   N G+  E++ +  +RD  MS  EA  +
Sbjct: 125 QPLGGAQGQATDIEIQAREILRLKKILNEIMAHNTGQKIEKITQDTERDFFMSGEEAKKY 184

Query: 199 GVVDKVL 205
           G+VD++L
Sbjct: 185 GLVDEIL 191


>gi|157364285|ref|YP_001471052.1| ATP-dependent Clp protease proteolytic subunit [Thermotoga
           lettingae TMO]
 gi|167008651|sp|A8F754|CLPP_THELT RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|157314889|gb|ABV33988.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermotoga
           lettingae TMO]
          Length = 199

 Score =  241 bits (614), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 112/191 (58%), Positives = 146/191 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P V+E T R ER+YDIYSRLLK+RIVF+   I+DH+A L+ AQLLFLEAE+P K+I L
Sbjct: 7   LIPTVIESTGRYERAYDIYSRLLKDRIVFLGYAIDDHVANLVVAQLLFLEAEDPDKDIQL 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+AIYDTMQ+IK  + T C+GQAASM ++LL++G KG RFALPNARI+L
Sbjct: 67  YINSPGGSVTAGLAIYDTMQYIKSDVVTICVGQAASMAAVLLASGTKGKRFALPNARIML 126

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  G   D+E   +++++IK  +N I  +  G+  + +EK  DRD  MSA EA D
Sbjct: 127 HQPLGGAEGPVKDVEIITKELLRIKNLINTILSEKTGQPLDRIEKDTDRDFFMSAYEALD 186

Query: 198 WGVVDKVLMSR 208
           +G+VDKV+ S+
Sbjct: 187 YGLVDKVIESK 197


>gi|15643458|ref|NP_228504.1| ATP-dependent Clp protease proteolytic subunit [Thermotoga maritima
           MSB8]
 gi|148269380|ref|YP_001243840.1| ATP-dependent Clp protease proteolytic subunit [Thermotoga
           petrophila RKU-1]
 gi|170288038|ref|YP_001738276.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermotoga
           sp. RQ2]
 gi|281411923|ref|YP_003346002.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermotoga
           naphthophila RKU-10]
 gi|6685314|sp|Q9WZF9|CLPP_THEMA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166214719|sp|A5IJ91|CLPP_THEP1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706553|sp|B1L812|CLPP_THESQ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|4981218|gb|AAD35777.1|AE001741_10 ATP-dependent Clp protease, proteolytic subunit [Thermotoga
           maritima MSB8]
 gi|147734924|gb|ABQ46264.1| ATP-dependent Clp protease proteolytic subunit ClpP [Thermotoga
           petrophila RKU-1]
 gi|170175541|gb|ACB08593.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermotoga
           sp. RQ2]
 gi|281373026|gb|ADA66588.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermotoga
           naphthophila RKU-10]
          Length = 203

 Score =  240 bits (613), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 113/190 (59%), Positives = 150/190 (78%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP+VVE T R ER+YDI+SRLLK+RIVF+   I+D++A L+ AQLLFLEAE+P K++ LY
Sbjct: 13  VPIVVESTGRYERAYDIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLY 72

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDTMQ+IK  +ST C+GQAASM ++LL+AG KG R+ALPNARI++H
Sbjct: 73  INSPGGSVTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIH 132

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  G A D+E   +++++IK  LN I  K+ G+  E++EK  DRD  MSA EA ++
Sbjct: 133 QPLGGAEGPAKDVEIITRELLRIKDLLNRILSKHTGQPIEKIEKDTDRDFFMSAEEAKEY 192

Query: 199 GVVDKVLMSR 208
           G+VDKV+ +R
Sbjct: 193 GIVDKVVSTR 202


>gi|146329429|ref|YP_001209154.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dichelobacter
           nodosus VCS1703A]
 gi|166201820|sp|A5EWF5|CLPP_DICNV RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|146232899|gb|ABQ13877.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dichelobacter
           nodosus VCS1703A]
          Length = 203

 Score =  240 bits (613), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 115/190 (60%), Positives = 152/190 (80%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +PMVVEQT RGER++DIYSRLLKER+VF+ G++ D  A L+ AQLLFLEAENP ++I  Y
Sbjct: 9   IPMVVEQTGRGERAFDIYSRLLKERVVFLVGEVNDASANLVVAQLLFLEAENPDQDIHFY 68

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAGM+IYDTMQFIKP +ST  +GQAASMG++LL+AG  G R+ALPN+R+++H
Sbjct: 69  INSPGGSVTAGMSIYDTMQFIKPDVSTMVLGQAASMGAVLLAAGAAGKRYALPNSRVMIH 128

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GGF GQASDI+ HA++I+ I+ RLN+I  K+ G+  E + +  +RD+ MSA  A ++
Sbjct: 129 QPLGGFRGQASDIDIHAREILFIRERLNQILAKHSGQDLETISRDTERDNFMSAERAQEY 188

Query: 199 GVVDKVLMSR 208
           G+VD +L  R
Sbjct: 189 GLVDAILTHR 198


>gi|320530213|ref|ZP_08031283.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Selenomonas
           artemidis F0399]
 gi|320137646|gb|EFW29558.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Selenomonas
           artemidis F0399]
          Length = 199

 Score =  240 bits (613), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 107/186 (57%), Positives = 154/186 (82%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MVVE ++RGER+YDIYSRLLKERI+F+ G I+D++A ++ AQ+LFLE+E+P K+I LYIN
Sbjct: 1   MVVENSSRGERAYDIYSRLLKERIIFLGGPIDDNVANVVVAQMLFLESEDPDKDIHLYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGGVVTAG+AIYDTMQ+IKP +ST C+GQAASMGS+LL+AG KG R+ALP+ARI++HQP
Sbjct: 61  SPGGVVTAGLAIYDTMQYIKPDVSTICIGQAASMGSILLTAGAKGKRYALPHARIMIHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            GG  GQ++DI+  A++I++++   NEI  ++ G+  +++    +RD+ MSA EA  +G+
Sbjct: 121 LGGAQGQSTDIQIQAKEILRLREVGNEILARHTGQDTDKINVDTERDNFMSAEEAKAYGL 180

Query: 201 VDKVLM 206
           +D+V++
Sbjct: 181 IDEVVV 186


>gi|254453571|ref|ZP_05067008.1| Clp protease [Octadecabacter antarcticus 238]
 gi|198267977|gb|EDY92247.1| Clp protease [Octadecabacter antarcticus 238]
          Length = 195

 Score =  240 bits (613), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 114/195 (58%), Positives = 151/195 (77%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MVVEQT RGER+YDI+SRLLKERI+FV G I   M+ LI AQLL LEAENP+KEIS+YIN
Sbjct: 1   MVVEQTARGERAYDIFSRLLKERIIFVNGPIHSGMSHLIVAQLLHLEAENPKKEISMYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGG VTAG++IYDTMQ+IKP +ST   G AASMGS++   GEKGMRFALPNA +++HQP
Sbjct: 61  SPGGEVTAGLSIYDTMQYIKPKVSTLICGMAASMGSVIAIGGEKGMRFALPNAEVMIHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
           SGG  G+A DI   A+ I + + R+ ++YVK+ G++ + V+K LDRD  M+  EA +WG 
Sbjct: 121 SGGSQGKAEDILISARHIERTRERMYQLYVKHSGQSLKTVQKALDRDLWMTPLEAKEWGH 180

Query: 201 VDKVLMSRIDIEEKS 215
           +D+++ +R   ++K+
Sbjct: 181 LDEIVENRAKEDDKT 195


>gi|320535322|ref|ZP_08035441.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Treponema
           phagedenis F0421]
 gi|320147822|gb|EFW39319.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Treponema
           phagedenis F0421]
          Length = 203

 Score =  240 bits (613), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 111/191 (58%), Positives = 148/191 (77%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQT  GERSYDI+SRLLK+RI+FV G+I D +A LI AQLLFLE++NP K+ISL
Sbjct: 8   LVPYVIEQTGNGERSYDIFSRLLKDRIIFVDGEINDTVADLIVAQLLFLESQNPDKDISL 67

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+AIYDTMQ I+P I T C+GQAASM ++LL+ G  G RFALP++R+++
Sbjct: 68  YINSPGGSVTAGLAIYDTMQHIRPKIQTICLGQAASMAAVLLAGGSAGKRFALPSSRVMI 127

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A++I+++K+   + + ++ GK+ +EV   ++RD  MSA EA  
Sbjct: 128 HQPWGGVQGQASDISIQAKEIIRLKKLTIKYFAEHTGKSEKEVADDMERDFFMSAEEAKA 187

Query: 198 WGVVDKVLMSR 208
           +G+VD V+  R
Sbjct: 188 YGIVDTVMNRR 198


>gi|315185394|gb|EFU19166.1| ATP-dependent Clp protease proteolytic subunit ClpP [Spirochaeta
           thermophila DSM 6578]
          Length = 206

 Score =  240 bits (613), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 109/189 (57%), Positives = 150/189 (79%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+V+EQT  GERSYDIYSRLLK+RIVF+ G+I D  A L+ AQLLFLE+++P+K+IS+
Sbjct: 8   LVPIVIEQTGMGERSYDIYSRLLKDRIVFIDGEINDLTADLVVAQLLFLESQDPEKDISV 67

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YIN+PGG VTAG+AIYDTMQ++KP + T C+GQAASMG+LLL+AG  G R ALP++RIL+
Sbjct: 68  YINTPGGSVTAGLAIYDTMQYVKPDVQTICLGQAASMGALLLTAGTPGKRLALPSSRILI 127

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DI   A+++V+IK+ L   +  + G+  EEV + L+RD+ M+  EA  
Sbjct: 128 HQPWGGVQGQATDISIQAREMVRIKKLLIHYFAHHTGRPEEEVAQDLERDYYMTPEEAKA 187

Query: 198 WGVVDKVLM 206
           +G++D +L+
Sbjct: 188 YGLIDDILI 196


>gi|241696180|ref|XP_002411835.1| ATP-dependent Clp protease, proteolytic subunit, putative [Ixodes
           scapularis]
 gi|215504758|gb|EEC14252.1| ATP-dependent Clp protease, proteolytic subunit, putative [Ixodes
           scapularis]
          Length = 235

 Score =  240 bits (613), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 109/188 (57%), Positives = 150/188 (79%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P+V+EQT RGER+YDIYSRLLKERIV V G I D +++L+ AQLLFL++E+ +K + +
Sbjct: 35  LIPIVIEQTGRGERAYDIYSRLLKERIVCVMGPITDELSSLVVAQLLFLQSESNKKPVHM 94

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+ IYDTMQ+I PPIST+C+GQA S GSLLL AG  GMR +LP++RI++
Sbjct: 95  YINSPGGSVTAGLGIYDTMQYIMPPISTWCIGQACSAGSLLLCAGTAGMRHSLPHSRIMI 154

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSG  SGQA+DI+ HA++I+ +KR +N +Y K+  +  E +E  ++RD  MSA +A +
Sbjct: 155 HQPSGQASGQATDIQIHAEEILHLKRVINGMYAKHTKQPLETIESAMERDRFMSAEQAKE 214

Query: 198 WGVVDKVL 205
           +G++D VL
Sbjct: 215 FGIIDVVL 222


>gi|253579815|ref|ZP_04857083.1| clp protease [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848814|gb|EES76776.1| clp protease [Ruminococcus sp. 5_1_39BFAA]
          Length = 193

 Score =  240 bits (612), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 114/193 (59%), Positives = 148/193 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLLK+RI+F+  ++ D  A LI +QLLFLEAE+P K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLKDRIIFLGEEVNDVSAGLIVSQLLFLEAEDPGKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMAIYDTMQ+IK  +ST C+G AASMG+ LL+ G KG RFALP++ I
Sbjct: 61  QLYINSPGGSVTAGMAIYDTMQYIKCDVSTICLGMAASMGAFLLAGGAKGKRFALPHSTI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I+  A  I + KR LNE+   N G+  E VE+  DRD+ M+A EA
Sbjct: 121 MIHQPSGGAQGQATEIQIVADHIAQTKRTLNELLAANTGQPIEVVERDTDRDNYMTAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D V+M +
Sbjct: 181 KAYGLIDGVVMHK 193


>gi|57168633|ref|ZP_00367765.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           coli RM2228]
 gi|305432739|ref|ZP_07401899.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter coli
           JV20]
 gi|57019914|gb|EAL56594.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           coli RM2228]
 gi|304444248|gb|EFM36901.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter coli
           JV20]
          Length = 194

 Score =  240 bits (612), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 109/188 (57%), Positives = 148/188 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            +P V+E+++RGERSYDIYSRLLK+RI+ ++G+I D +A  I AQLLFLEAE+P K+I L
Sbjct: 2   FIPYVIEKSSRGERSYDIYSRLLKDRIIMLSGEIHDELAASIVAQLLFLEAEDPTKDIYL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+T+G +IYDTM +IKP + T C+GQAASMG+ LLS G +G RFALPN+RI++
Sbjct: 62  YINSPGGVITSGFSIYDTMNYIKPDVCTICIGQAASMGAFLLSCGAEGKRFALPNSRIMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+++K  LN+I  KN  +   ++ K  +RD  MSA EA +
Sbjct: 122 HQPLGGARGQATDIEIQAKEILRLKAILNDILAKNTKQKVAKIVKDTERDFFMSAQEAKE 181

Query: 198 WGVVDKVL 205
           +G++DKVL
Sbjct: 182 YGLIDKVL 189


>gi|199597270|ref|ZP_03210701.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           rhamnosus HN001]
 gi|229551778|ref|ZP_04440503.1| endopeptidase Clp [Lactobacillus rhamnosus LMS2-1]
 gi|258507926|ref|YP_003170677.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           rhamnosus GG]
 gi|258539175|ref|YP_003173674.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           rhamnosus Lc 705]
 gi|199591786|gb|EDY99861.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           rhamnosus HN001]
 gi|229314832|gb|EEN80805.1| endopeptidase Clp [Lactobacillus rhamnosus LMS2-1]
 gi|257147853|emb|CAR86826.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           rhamnosus GG]
 gi|257150851|emb|CAR89823.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           rhamnosus Lc 705]
 gi|259649253|dbj|BAI41415.1| Clp protease proteolytic subunit [Lactobacillus rhamnosus GG]
 gi|328465358|gb|EGF36608.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           rhamnosus MTCC 5462]
          Length = 196

 Score =  240 bits (612), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 105/191 (54%), Positives = 151/191 (79%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP VVEQT+RGER+YDIYSRLLK+RI+ ++G++ D MA  + AQLLFL+A++ +K+I L
Sbjct: 2   LVPTVVEQTSRGERAYDIYSRLLKDRIIMLSGEVNDQMANSVIAQLLFLDAQDSEKDIYL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+T+G+A+ DTM FIK  + T  +G AASM S+LL+ G KG RFALPN+ IL+
Sbjct: 62  YINSPGGVITSGLAMLDTMNFIKSDVQTIAIGMAASMASVLLAGGTKGKRFALPNSTILI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQ ++IE  A++I+K ++++N+I     G+T E+++K  +RDH MSA EA D
Sbjct: 122 HQPSGGAQGQQTEIEIAAEEILKTRKKMNQILADATGQTVEQIKKDTERDHYMSAQEAKD 181

Query: 198 WGVVDKVLMSR 208
           +G++D +L+++
Sbjct: 182 YGLIDDILVNK 192


>gi|325662430|ref|ZP_08151036.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|331086220|ref|ZP_08335302.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|325471264|gb|EGC74488.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|330406379|gb|EGG85893.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 193

 Score =  240 bits (612), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 113/191 (59%), Positives = 150/191 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLLK+RI+F+  ++ D  A++I AQLLFLEAE+P+K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLKDRIIFLGEEVNDVSASVIVAQLLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMAIYDTMQFIK  +ST C+G AASMG+ LL+ G KG R+ALPNA I
Sbjct: 61  HLYINSPGGSVTAGMAIYDTMQFIKCDVSTTCIGMAASMGAFLLAGGAKGKRYALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+DI+  A  I+K + +LN+I  +N G+    +E   +RD+ MSA EA
Sbjct: 121 MIHQPSGGAQGQATDIKIVADHILKTRTKLNKILAENTGQDLSVIEVDTERDNYMSAEEA 180

Query: 196 CDWGVVDKVLM 206
             +G++D+V++
Sbjct: 181 KAYGLIDEVII 191


>gi|251797042|ref|YP_003011773.1| ATP-dependent Clp protease proteolytic subunit ClpP [Paenibacillus
           sp. JDR-2]
 gi|247544668|gb|ACT01687.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
           sp. JDR-2]
          Length = 194

 Score =  240 bits (612), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 110/188 (58%), Positives = 142/188 (75%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            +P VVEQ+NRGERSYDIYSRLLK+RIVF+   I+D +A  I AQLLFL AE+P KEISL
Sbjct: 4   FIPYVVEQSNRGERSYDIYSRLLKDRIVFLGSAIDDQVANSIVAQLLFLAAEDPDKEISL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TAG AIYDTMQ+IKP + T C+G AAS  ++LL +G KG RFALP++ +++
Sbjct: 64  YINSPGGSTTAGFAIYDTMQYIKPEVHTICVGMAASFAAILLLSGAKGKRFALPSSEVMI 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A+ I+  + RLN I     G+  E++EK +DRD+ +SA EA D
Sbjct: 124 HQPHGGAQGQASDIAISAKRILDTRARLNRIAADRTGQPLEKIEKDMDRDYFLSAQEALD 183

Query: 198 WGVVDKVL 205
           +G++D+V+
Sbjct: 184 YGIIDQVV 191


>gi|282856773|ref|ZP_06266034.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Pyramidobacter piscolens W5455]
 gi|282585396|gb|EFB90703.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Pyramidobacter piscolens W5455]
          Length = 192

 Score =  240 bits (612), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 112/190 (58%), Positives = 147/190 (77%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+EQT RGERSYDIYSRLLK+RIVF+  +I D +A  + AQLLFLE+E+P+++IS+Y
Sbjct: 3   IPFVIEQTGRGERSYDIYSRLLKDRIVFLGDEINDDVANAVVAQLLFLESESPERDISIY 62

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG V+AG+AIYDTMQF+K  +ST  +G AASM ++LLSAG  G R ALPN+RI++H
Sbjct: 63  INSPGGSVSAGLAIYDTMQFVKCDVSTIVVGMAASMAAVLLSAGSAGKRIALPNSRIMIH 122

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQASDIE  A++I+K K  LN I VK+ G++  +V+   DRD  M+A EA  +
Sbjct: 123 QPLGGAQGQASDIEIQAREIIKTKETLNNILVKHTGQSMRKVKGDTDRDFYMTAQEALAY 182

Query: 199 GVVDKVLMSR 208
           G+VDKV+  R
Sbjct: 183 GIVDKVIDKR 192


>gi|260589157|ref|ZP_05855070.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Blautia
           hansenii DSM 20583]
 gi|331082573|ref|ZP_08331698.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|260540577|gb|EEX21146.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Blautia
           hansenii DSM 20583]
 gi|330400551|gb|EGG80181.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 193

 Score =  240 bits (612), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 112/193 (58%), Positives = 147/193 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGER+YDIYSRLLK+RI+F+  ++ D  A LI AQLLFLE+E+P K+I
Sbjct: 1   MSLVPYVIEQTSRGERNYDIYSRLLKDRIIFLGEEVTDVSANLIAAQLLFLESEDPGKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGM IYDTMQ+IK  +ST CMG AASMG+ LL+ G KG R ALPNA I
Sbjct: 61  HLYINSPGGSVTAGMVIYDTMQYIKCDVSTICMGLAASMGAFLLAGGAKGKRMALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I+  AQ I+K + +LN I  +N G+T E + +  +RD+ M+A EA
Sbjct: 121 MIHQPSGGAQGQATEIDIVAQQILKTRHKLNSILAQNTGQTLETIARDTERDNYMTAQEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D V+  R
Sbjct: 181 MAYGLIDSVIEHR 193


>gi|30265176|ref|NP_847553.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
           str. Ames]
 gi|47530690|ref|YP_022039.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49187986|ref|YP_031239.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
           str. Sterne]
 gi|65317122|ref|ZP_00390081.1| COG0740: Protease subunit of ATP-dependent Clp proteases [Bacillus
           anthracis str. A2012]
 gi|165869926|ref|ZP_02214583.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0488]
 gi|167635263|ref|ZP_02393578.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0442]
 gi|167640458|ref|ZP_02398721.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0193]
 gi|170687959|ref|ZP_02879172.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0465]
 gi|170707727|ref|ZP_02898178.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0389]
 gi|177652976|ref|ZP_02935303.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0174]
 gi|190567666|ref|ZP_03020578.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis Tsiankovskii-I]
 gi|227817909|ref|YP_002817918.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. CDC 684]
 gi|229599890|ref|YP_002869370.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0248]
 gi|254686423|ref|ZP_05150282.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
           str. CNEVA-9066]
 gi|254735629|ref|ZP_05193336.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
           str. Western North America USA6153]
 gi|254744284|ref|ZP_05201964.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
           str. Kruger B]
 gi|254755582|ref|ZP_05207615.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
           str. Vollum]
 gi|254757037|ref|ZP_05209065.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
           str. Australia 94]
 gi|67460531|sp|Q81X63|CLPP2_BACAN RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|30259853|gb|AAP29039.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. Ames]
 gi|47505838|gb|AAT34514.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49181913|gb|AAT57289.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. Sterne]
 gi|164714249|gb|EDR19769.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0488]
 gi|167511501|gb|EDR86884.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0193]
 gi|167529306|gb|EDR92058.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0442]
 gi|170127284|gb|EDS96160.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0389]
 gi|170668068|gb|EDT18818.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0465]
 gi|172081751|gb|EDT66821.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0174]
 gi|190561082|gb|EDV15055.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis Tsiankovskii-I]
 gi|227003920|gb|ACP13663.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. CDC 684]
 gi|229264298|gb|ACQ45935.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0248]
          Length = 193

 Score =  240 bits (612), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 105/193 (54%), Positives = 152/193 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFLE+++P+K+I
Sbjct: 1   MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG +TAGMAIYDTMQFIKP +ST C+G AASMG+ LL+AGEKG R+ALPN+  
Sbjct: 61  HIYINSPGGSITAGMAIYDTMQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEA 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN+I     G+  E +++  DRD+ M+A +A
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILFLREKLNQILADRTGQPLEVLQRDTDRDNFMTAEKA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++DK+  +R
Sbjct: 181 LEYGLIDKIFTNR 193


>gi|225573066|ref|ZP_03781821.1| hypothetical protein RUMHYD_01257 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039572|gb|EEG49818.1| hypothetical protein RUMHYD_01257 [Blautia hydrogenotrophica DSM
           10507]
          Length = 193

 Score =  240 bits (612), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 115/193 (59%), Positives = 146/193 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP VVEQT+RGER+YDIYSRLLK+RI+F+  ++ D  A+L+ AQLLFLE+E+  K+I
Sbjct: 1   MSLVPYVVEQTSRGERNYDIYSRLLKDRIIFLGEEVNDVTASLVVAQLLFLESEDAGKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMAIYDTMQ+IK  +ST C+G AASMG+ LL+ G KG R ALPN+ I
Sbjct: 61  QLYINSPGGSVTAGMAIYDTMQYIKCDVSTICLGLAASMGAFLLAGGAKGKRIALPNSTI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I+  A  I K KR LNEI   N G+  E VE   DRD+ MSA EA
Sbjct: 121 MIHQPSGGAQGQATEIQIVADHIAKTKRTLNEILAANTGQPLEVVEVDTDRDNYMSAQEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++DK++  R
Sbjct: 181 QAYGLIDKIITHR 193


>gi|257870013|ref|ZP_05649666.1| peptidase S14 [Enterococcus gallinarum EG2]
 gi|257804177|gb|EEV32999.1| peptidase S14 [Enterococcus gallinarum EG2]
          Length = 196

 Score =  240 bits (612), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 109/192 (56%), Positives = 150/192 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQ++RGER+YDIYSRLLK+RI+ ++GQ+ D +A  I AQLLFL+A++ +K+I
Sbjct: 1   MNLIPTVIEQSSRGERAYDIYSRLLKDRIIMLSGQVTDDLANSIIAQLLFLDAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG+AI+DTM FIK  + T  MG AASMGS LL+AGEKG RFALPNA I
Sbjct: 61  YLYINSPGGSVTAGLAIFDTMNFIKADVQTIVMGMAASMGSFLLTAGEKGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I++ + RLN+I  +  G+  E +EK  DRD+ M+A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAARHILQTRERLNKILSERTGQPIEVIEKDTDRDNFMTAQEA 180

Query: 196 CDWGVVDKVLMS 207
            D+G++D+++ S
Sbjct: 181 KDYGLIDEIMES 192


>gi|331003803|ref|ZP_08327295.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
           oral taxon 107 str. F0167]
 gi|330411995|gb|EGG91392.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
           oral taxon 107 str. F0167]
          Length = 193

 Score =  240 bits (612), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 107/190 (56%), Positives = 149/190 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+E T+RGER++DIYSRLLK+RI+F+  ++ D  A+L+ AQ+LFLE+E+P K+I
Sbjct: 1   MSLVPTVIESTSRGERAFDIYSRLLKDRIIFLGEEVNDVTASLVVAQILFLESEDPTKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGG V AGMAIYDTMQ++K  +ST CMG AASMG+ LL+ G KG R+ALPNA I
Sbjct: 61  NLYINSPGGSVVAGMAIYDTMQYVKCDVSTICMGMAASMGAFLLAGGTKGKRYALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I   A+ I+K K ++N+I  +N  +  E +E+  +RD+ MSA EA
Sbjct: 121 MIHQPSGGAQGQATEIRIAAEQILKTKEKMNKILAENTNRPIEVIERDTERDNYMSAKEA 180

Query: 196 CDWGVVDKVL 205
            D+G++DKV+
Sbjct: 181 LDYGIIDKVI 190


>gi|42527179|ref|NP_972277.1| ATP-dependent Clp protease proteolytic subunit [Treponema denticola
           ATCC 35405]
 gi|67460504|sp|Q73M38|CLPP1_TREDE RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|41817603|gb|AAS12188.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Treponema
           denticola ATCC 35405]
          Length = 197

 Score =  239 bits (611), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 110/193 (56%), Positives = 147/193 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQT  GERSYDI+SRLLK+RI+FV G+I D  A L+ AQLLFLEA+NP K+ISL
Sbjct: 4   LVPYVIEQTGNGERSYDIFSRLLKDRIIFVDGEINDMSADLVVAQLLFLEAQNPDKDISL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+AIYDTMQ I+P + T C+GQ ASMG++LL+ G K  R+ALP++R+++
Sbjct: 64  YINSPGGSVTAGLAIYDTMQHIRPDVQTICLGQCASMGAVLLAGGAKNKRYALPSSRVMI 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA DI   A++IV++K+   + + +N GKT ++V   ++RD  MSA EA  
Sbjct: 124 HQPWGGVQGQAVDINIQAKEIVRLKKLTIKYFAENTGKTEKQVAADMERDFFMSAEEALT 183

Query: 198 WGVVDKVLMSRID 210
           +G++D V+  R D
Sbjct: 184 YGIIDTVMNRRKD 196


>gi|73663232|ref|YP_302013.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|124013830|sp|Q49VZ2|CLPP_STAS1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|72495747|dbj|BAE19068.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 194

 Score =  239 bits (611), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 108/191 (56%), Positives = 150/191 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+E TNRGER+YDIYSRLLK+RI+ +  QI+D++A  I +QLLFL+A++ +K+I
Sbjct: 1   MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDAEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG AIYDT+Q IKP + T C+G AASMGS LL+AG KG RFALPNA +
Sbjct: 61  YLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A  I+K + +LN+I  +  G++ E++E+  DRD+ +SA EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAANHILKTRAKLNQILAERTGQSIEKIEQDTDRDNFLSAEEA 180

Query: 196 CDWGVVDKVLM 206
            D+G+VD+V++
Sbjct: 181 KDYGLVDQVMV 191


>gi|218289882|ref|ZP_03494072.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Alicyclobacillus acidocaldarius LAA1]
 gi|258511244|ref|YP_003184678.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|218240022|gb|EED07208.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Alicyclobacillus acidocaldarius LAA1]
 gi|257477970|gb|ACV58289.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 192

 Score =  239 bits (611), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 109/190 (57%), Positives = 147/190 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT+RGERSYDIYSRLLK+RI+F+   I+D +A  + AQLLFL A++P K+I
Sbjct: 1   MSLIPYVIEQTSRGERSYDIYSRLLKDRIIFLGTPIDDDVANAVVAQLLFLAADDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG V+AG+AIYDTMQ IKP +ST C+G AASM ++LL+AG KG R+ALPN+ +
Sbjct: 61  QMYINSPGGSVSAGLAIYDTMQHIKPDVSTMCVGMAASMAAVLLAAGAKGKRYALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDIE HA+ I+K + RLN I  +  G+  E V +  DRD+ MSA EA
Sbjct: 121 MIHQPLGGARGQASDIEIHARHILKTRERLNRILAERTGQPLERVAQDTDRDNFMSAEEA 180

Query: 196 CDWGVVDKVL 205
             +G++D+V+
Sbjct: 181 KAYGLIDEVI 190


>gi|320164411|gb|EFW41310.1| ATP-dependent Clp protease proteolytic subunit [Capsaspora
           owczarzaki ATCC 30864]
          Length = 257

 Score =  239 bits (611), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 108/198 (54%), Positives = 151/198 (76%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
           S  V  G++P VVE T + ER +D++SRLL+ERI+ + G I+D  A++I  QLLFLE +N
Sbjct: 54  SPTVGAGVIPTVVENTGKSERWFDLFSRLLRERIICLMGPIDDSTASVIVGQLLFLEGDN 113

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
           P K I +YINSPGGVVTAGMAIYDTMQ+++ P+ST CMGQAASMGSL+L+AG KG RF L
Sbjct: 114 PLKPIHMYINSPGGVVTAGMAIYDTMQYVQSPVSTICMGQAASMGSLILAAGAKGQRFIL 173

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           P+AR+++HQP GG  GQASDI   A++I+K++  LN IYV++ G+  + +E   +RD+ M
Sbjct: 174 PHARVMIHQPLGGAQGQASDIAIQAREILKMREMLNRIYVEHTGQPLKRIEDATERDYFM 233

Query: 191 SASEACDWGVVDKVLMSR 208
           +  EA ++G++D+V+  R
Sbjct: 234 NPEEAKEFGIIDQVIQKR 251


>gi|325474230|gb|EGC77418.1| ATP-dependent Clp protease proteolytic subunit 1 [Treponema
           denticola F0402]
          Length = 197

 Score =  239 bits (611), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 110/193 (56%), Positives = 147/193 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQT  GERSYDI+SRLLK+RI+FV G+I D  A L+ AQLLFLEA+NP K+ISL
Sbjct: 4   LVPYVIEQTGNGERSYDIFSRLLKDRIIFVDGEINDMSADLVVAQLLFLEAQNPDKDISL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+AIYDTMQ I+P + T C+GQ ASMG++LL+ G K  R+ALP++R+++
Sbjct: 64  YINSPGGSVTAGLAIYDTMQHIRPDVQTICLGQCASMGAVLLAGGAKNKRYALPSSRVMI 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA DI   A++IV++K+   + + +N GKT ++V   ++RD  MSA EA  
Sbjct: 124 HQPWGGVQGQAVDINIQAKEIVRLKKLTIKYFAENTGKTEKQVAADMERDFFMSAEEALA 183

Query: 198 WGVVDKVLMSRID 210
           +G++D V+  R D
Sbjct: 184 YGIIDTVMNRRKD 196


>gi|295094048|emb|CBK83139.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Coprococcus
           sp. ART55/1]
          Length = 193

 Score =  239 bits (611), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 110/193 (56%), Positives = 149/193 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP VVEQT+RGER+YDIYSRLLK+RI+F+  ++ D  A+L+ AQLLFLE+E+P K+I
Sbjct: 1   MALVPYVVEQTSRGERTYDIYSRLLKDRIIFLGDEVNDATASLVIAQLLFLESEDPSKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG VTAGM IYDTM++IK  +ST C G AASMG+ LL+ G KG R+ALPN+ I
Sbjct: 61  SLYINSPGGSVTAGMGIYDTMRYIKCDVSTICCGMAASMGAFLLAGGTKGKRYALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K K +LN++  +N GK  + +    DRD+ M+A EA
Sbjct: 121 MIHQPLGGTQGQATEIEIAARHILKTKEKLNKMLSENTGKPLDVIAADTDRDNWMTAEEA 180

Query: 196 CDWGVVDKVLMSR 208
           C +G++D V+ +R
Sbjct: 181 CAYGLIDSVITNR 193


>gi|17538017|ref|NP_496215.1| CLP Protease family member (clpp-1) [Caenorhabditis elegans]
 gi|3881896|emb|CAA88886.1| C. elegans protein ZK970.2a, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 206

 Score =  239 bits (611), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 110/186 (59%), Positives = 149/186 (80%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V++   +GER+YDIYSRLL++RIV +   ++D +A+ + AQLLFL++E+ +K I +Y
Sbjct: 11  IPFVIDNEGKGERTYDIYSRLLRDRIVCLMTPVDDFIASALIAQLLFLQSESGKKPIHMY 70

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDT+Q I  P+ST+ +GQA+SMGSLLL AGEKGMR ALPN+RI++H
Sbjct: 71  INSPGGSVTAGLAIYDTIQMISAPVSTWVIGQASSMGSLLLCAGEKGMRSALPNSRIMVH 130

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  G  SDI   A++I ++KRRLNEIYV + G +Y+E+EKTLDRD  MSA EA  +
Sbjct: 131 QPSGGAQGTCSDIVIRAEEITRLKRRLNEIYVHHTGMSYDEIEKTLDRDRFMSAHEALKF 190

Query: 199 GVVDKV 204
           G+VD++
Sbjct: 191 GLVDQI 196


>gi|121612255|ref|YP_999911.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|167004871|ref|ZP_02270629.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|166201812|sp|A1VXS0|CLPP_CAMJJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|87250345|gb|EAQ73303.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. jejuni 81-176]
          Length = 194

 Score =  239 bits (610), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 108/188 (57%), Positives = 147/188 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            +P V+E+++RGERSYDIYSRLLK+RI+ ++G+I D +A  I AQLLFLEAE+P K+I L
Sbjct: 2   FIPYVIEKSSRGERSYDIYSRLLKDRIIMLSGEIHDELAASIVAQLLFLEAEDPTKDIYL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+T+G +IYDTM +IKP + T C+GQAASMG+ LLS G +G RFALPN+RI++
Sbjct: 62  YINSPGGVITSGFSIYDTMNYIKPDVCTICIGQAASMGAFLLSCGAEGKRFALPNSRIMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+++K  LN+I  KN  +   ++ K  +RD  MS  EA +
Sbjct: 122 HQPLGGARGQATDIEIQAKEILRLKTILNDILAKNTKQKVAKIAKDTERDFFMSTQEAKE 181

Query: 198 WGVVDKVL 205
           +G++DKVL
Sbjct: 182 YGLIDKVL 189


>gi|284018074|sp|Q27539|CLPP1_CAEEL RecName: Full=ATP-dependent Clp protease proteolytic subunit 1,
           mitochondrial; AltName: Full=Endopeptidase Clp; Flags:
           Precursor
          Length = 221

 Score =  239 bits (610), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 110/186 (59%), Positives = 149/186 (80%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V++   +GER+YDIYSRLL++RIV +   ++D +A+ + AQLLFL++E+ +K I +Y
Sbjct: 26  IPFVIDNEGKGERTYDIYSRLLRDRIVCLMTPVDDFIASALIAQLLFLQSESGKKPIHMY 85

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDT+Q I  P+ST+ +GQA+SMGSLLL AGEKGMR ALPN+RI++H
Sbjct: 86  INSPGGSVTAGLAIYDTIQMISAPVSTWVIGQASSMGSLLLCAGEKGMRSALPNSRIMVH 145

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  G  SDI   A++I ++KRRLNEIYV + G +Y+E+EKTLDRD  MSA EA  +
Sbjct: 146 QPSGGAQGTCSDIVIRAEEITRLKRRLNEIYVHHTGMSYDEIEKTLDRDRFMSAHEALKF 205

Query: 199 GVVDKV 204
           G+VD++
Sbjct: 206 GLVDQI 211


>gi|169625037|ref|XP_001805923.1| hypothetical protein SNOG_15785 [Phaeosphaeria nodorum SN15]
 gi|160705586|gb|EAT76880.2| hypothetical protein SNOG_15785 [Phaeosphaeria nodorum SN15]
          Length = 228

 Score =  239 bits (610), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 108/193 (55%), Positives = 151/193 (78%), Gaps = 2/193 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V E    G ++ DI+SRLL+ERI+ + G++ED M+ ++ AQLLFLEAENP+K IS+Y
Sbjct: 27  IPYVTESMGGGFKTSDIFSRLLQERIITLNGEVEDSMSAVVIAQLLFLEAENPEKPISMY 86

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG V+AG+AIYDTM +I+ P+ST CMG AASMGSLLL+ GE G R+ LP+AR+++H
Sbjct: 87  INSPGGSVSAGLAIYDTMNYIRSPVSTTCMGMAASMGSLLLAGGEPGQRYILPHARVMIH 146

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK--TYEEVEKTLDRDHIMSASEAC 196
           QPSGG+ G+ASDI  HA++I++I+ RLN IY  +  K  T EE+EK ++RD+ M A EA 
Sbjct: 147 QPSGGYRGKASDIADHAKEILRIRDRLNRIYQNHLTKERTLEEIEKYMERDYYMDAEEAV 206

Query: 197 DWGVVDKVLMSRI 209
           ++G+VDK++  R+
Sbjct: 207 EFGIVDKIMEKRV 219


>gi|322435045|ref|YP_004217257.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Acidobacterium sp. MP5ACTX9]
 gi|321162772|gb|ADW68477.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Acidobacterium sp. MP5ACTX9]
          Length = 197

 Score =  239 bits (610), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 106/191 (55%), Positives = 155/191 (81%), Gaps = 1/191 (0%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +GL+P VVEQT+RGER+YDIYSRLL++ I+F+   I+D++A +I AQLLFL  E+P+K+I
Sbjct: 1   MGLIPYVVEQTSRGERTYDIYSRLLRDNIIFMGTPIDDNVANVIIAQLLFLSGEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG +TAG+AIYDTMQ+IK  + T C+GQAASMG+ LL AG++G RFALPN+RI
Sbjct: 61  QMYINSPGGSITAGLAIYDTMQYIKNDVMTLCIGQAASMGAFLLMAGKQGKRFALPNSRI 120

Query: 136 LLHQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           L+HQPS GG SGQA+DI+ HA++I++I+   N +  K+ G+   ++E+ ++RD IM+A +
Sbjct: 121 LIHQPSMGGLSGQATDIDIHAREILRIREITNTLMSKSTGQPLAQIERDVERDFIMTAPQ 180

Query: 195 ACDWGVVDKVL 205
           A ++G++D ++
Sbjct: 181 AKEYGIIDDII 191


>gi|225568849|ref|ZP_03777874.1| hypothetical protein CLOHYLEM_04928 [Clostridium hylemonae DSM
           15053]
 gi|225162348|gb|EEG74967.1| hypothetical protein CLOHYLEM_04928 [Clostridium hylemonae DSM
           15053]
          Length = 193

 Score =  239 bits (610), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 111/193 (57%), Positives = 151/193 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLLK+RI+F+  ++ D  A++I AQLLFLEAE+P+K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLKDRIIFLGEEVTDVSASVIVAQLLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG V+AG+AIYDTMQ+IK  I T C+G AASMGS LL+ G KG R ALPNA I
Sbjct: 61  HLYINSPGGSVSAGLAIYDTMQYIKSDIETICIGMAASMGSFLLAGGTKGKRLALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I+  A+ I+K ++RLN+I  +N G+  + +    +RD+ MSA EA
Sbjct: 121 MIHQPSGGAQGQATEIQIAAEHILKTRQRLNQILAENTGQPLDVIRIDTERDNFMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D+V+ +R
Sbjct: 181 KAYGLIDEVIKNR 193


>gi|257456332|ref|ZP_05621529.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Treponema
           vincentii ATCC 35580]
 gi|257446418|gb|EEV21464.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Treponema
           vincentii ATCC 35580]
          Length = 201

 Score =  239 bits (610), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 110/191 (57%), Positives = 147/191 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQT  GERSYDI+SRLLK+RI+FV G+I D  A L+ AQLLFLE++NP K+ISL
Sbjct: 8   LVPYVIEQTGNGERSYDIFSRLLKDRIIFVDGEITDATADLVVAQLLFLESQNPDKDISL 67

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+A+YDTMQ I P + T C+GQAASM ++LL+ G KG RFALP++R+++
Sbjct: 68  YINSPGGSVTAGLAVYDTMQHIHPNVQTICLGQAASMAAVLLAGGSKGKRFALPSSRVMI 127

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A++I+++K+ + +    + GKT   V + ++RD  MSA EAC+
Sbjct: 128 HQPWGGAQGQASDITIQAREILRLKKLIIQYCAHHTGKTESAVAEDMERDFFMSAQEACE 187

Query: 198 WGVVDKVLMSR 208
           +G+VD V+  R
Sbjct: 188 YGIVDMVMDRR 198


>gi|94958239|gb|ABF47251.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           xylosus]
          Length = 194

 Score =  239 bits (610), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 108/191 (56%), Positives = 150/191 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+E TNRGER+YDIYSRLLK+RI+ +  QI+D++A  I +QLLFL+A++ +K+I
Sbjct: 1   MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDAEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG AIYDT+Q IKP + T C+G AASMGS LL+AG KG RFALPNA +
Sbjct: 61  YLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A  I+K + +LN+I  +  G++ E++EK  DRD+ +SA EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAANHILKTRAKLNQILAERTGQSIEKIEKDTDRDNFLSAEEA 180

Query: 196 CDWGVVDKVLM 206
            ++G+VD+V++
Sbjct: 181 KEYGLVDQVMV 191


>gi|55980584|ref|YP_143881.1| ATP-dependent Clp protease proteolytic subunit [Thermus
           thermophilus HB8]
 gi|60389682|sp|Q72L15|CLPP_THET2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|67460210|sp|Q5SKM8|CLPP_THET8 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|55771997|dbj|BAD70438.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermus
           thermophilus HB8]
          Length = 194

 Score =  239 bits (610), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 107/188 (56%), Positives = 149/188 (79%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+EQT RGER YDIYSRLLK+RI+F+   I+  +A ++ AQLLFL+A+NP +EI L
Sbjct: 2   VIPYVIEQTARGERVYDIYSRLLKDRIIFLGTPIDAQVANVVVAQLLFLDAQNPNQEIKL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+AIYDTMQF++ P+ST  +G AASM +++L+AGEKG R+ALP+A++++
Sbjct: 62  YINSPGGEVDAGLAIYDTMQFVRAPVSTIVIGMAASMAAVILAAGEKGRRYALPHAKVMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  G ASDI   AQ+I+K K+ LNEI  K+ G+  E+VEK  DRD+ +SA EA +
Sbjct: 122 HQPWGGVRGTASDIAIQAQEILKAKKLLNEILAKHTGQPLEKVEKDTDRDYYLSAQEALE 181

Query: 198 WGVVDKVL 205
           +G++D+V+
Sbjct: 182 YGLIDQVV 189


>gi|149181848|ref|ZP_01860338.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sp. SG-1]
 gi|148850487|gb|EDL64647.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sp. SG-1]
          Length = 206

 Score =  239 bits (610), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 105/192 (54%), Positives = 149/192 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+R++ +   I+D++A  I AQLLFLE+ENP+K+I
Sbjct: 8   MNLIPTVIEQTNRGERAYDIYSRLLKDRVIMLGSGIDDNVANSIVAQLLFLESENPEKDI 67

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGG +TAGMAIYDT+Q+IKP + T C+G AASMG+ LL+AG KG R ALPNA +
Sbjct: 68  SIYINSPGGSITAGMAIYDTIQYIKPDVQTICIGMAASMGAFLLAAGAKGKRLALPNAEV 127

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN+I     G+  E + K  DRD+ M+A  A
Sbjct: 128 MIHQPLGGAQGQATEIEIAAKRILFLREKLNQILSDRTGQPLEVISKDTDRDNFMTAERA 187

Query: 196 CDWGVVDKVLMS 207
            ++G++D+++ S
Sbjct: 188 LEYGLIDRIITS 199


>gi|115374393|ref|ZP_01461676.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Stigmatella
           aurantiaca DW4/3-1]
 gi|310824399|ref|YP_003956757.1| ATP-dependent CLP protease proteolytic subunit 2 [Stigmatella
           aurantiaca DW4/3-1]
 gi|115368595|gb|EAU67547.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Stigmatella
           aurantiaca DW4/3-1]
 gi|309397471|gb|ADO74930.1| ATP-dependent Clp protease proteolytic subunit 2 [Stigmatella
           aurantiaca DW4/3-1]
          Length = 200

 Score =  239 bits (609), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 107/188 (56%), Positives = 152/188 (80%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+E ++RGER+YD+YSRLLK+RI+ +   I D +A ++ AQ+LFLE+E+P+K I++Y
Sbjct: 3   IPFVIETSHRGERAYDLYSRLLKDRIIMLGVPINDEVANVVVAQMLFLESEDPEKGINIY 62

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDTMQ++K P+ST C+GQAASMG+LLL AG KG R+ALPNARI++H
Sbjct: 63  INSPGGSVTAGLAIYDTMQYVKCPVSTICVGQAASMGALLLLAGSKGKRYALPNARIMIH 122

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA+DI+  A++I+++K  LN I VK+ G T E +EK  +RD+ MSA +A  +
Sbjct: 123 QPLGGAQGQATDIDIQAKEILRLKAYLNGIIVKHTGHTIERIEKDTERDYFMSADDARQY 182

Query: 199 GVVDKVLM 206
           G++D+V++
Sbjct: 183 GIIDEVVV 190


>gi|326203841|ref|ZP_08193703.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           papyrosolvens DSM 2782]
 gi|325985939|gb|EGD46773.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           papyrosolvens DSM 2782]
          Length = 194

 Score =  239 bits (609), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 104/193 (53%), Positives = 151/193 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQTNRGERSYDI+SRLL +RI+ ++ ++ D  A+L+ AQ+L+LEA++P K+I
Sbjct: 1   MSLVPMVVEQTNRGERSYDIFSRLLNDRIIVLSDEVNDATASLVVAQMLYLEAQDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG V +G AIYDTMQ++K  +ST CMG AASMG+ LL+AGEKG RFALPN+ I
Sbjct: 61  QFYINSPGGSVASGFAIYDTMQYVKCDVSTICMGMAASMGAFLLAAGEKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+ HA++I++ + +LN+I  +  G+  +++E+  +RD  MSA +A
Sbjct: 121 MIHQPLGGAKGQATDIKIHAENILRTRDKLNKILSERTGQPLDKIERDTERDFFMSADDA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D +++ R
Sbjct: 181 KAYGIIDDIMVRR 193


>gi|225028671|ref|ZP_03717863.1| hypothetical protein EUBHAL_02950 [Eubacterium hallii DSM 3353]
 gi|224953981|gb|EEG35190.1| hypothetical protein EUBHAL_02950 [Eubacterium hallii DSM 3353]
          Length = 194

 Score =  239 bits (609), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 111/193 (57%), Positives = 149/193 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+ GERSYDIYSRLLKERI+F+  ++ D  A+LI +QLLFLE+E+P+K+I
Sbjct: 1   MSLVPYVIEQTSHGERSYDIYSRLLKERIIFLGEEVNDTTASLIVSQLLFLESEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYI SPGG VTAGMAIYDTMQF+K  +ST CMG AASMG+ LL+ G KG R ALPN+ I
Sbjct: 61  SLYIMSPGGSVTAGMAIYDTMQFVKCDVSTICMGMAASMGAFLLAGGAKGKRLALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++IE  A+ I+  K +LN I  +N G+ YE++ +  +RD+ M+A +A
Sbjct: 121 MIHQPSGGAQGQATEIEIVAEHILHTKEKLNRILAENTGQPYEKIVQDTERDNYMTAEQA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D V+  R
Sbjct: 181 KAYGLIDAVVEKR 193


>gi|307692047|ref|ZP_07634284.1| ATP-dependent Clp protease proteolytic subunit [Ruminococcaceae
           bacterium D16]
          Length = 193

 Score =  239 bits (609), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 107/193 (55%), Positives = 148/193 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP VVEQTNRGERSYDI+SRLL +RI+F++ ++ D  A+L+ AQLL+LE+++P K+I
Sbjct: 1   MSLVPYVVEQTNRGERSYDIFSRLLNDRIIFLSEEVNDTTASLVVAQLLYLESQDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG VTAGMAIYDTMQ++K  +ST C+G AASMG+ LLSAG KG R ALPN+ I
Sbjct: 61  QFYINSPGGSVTAGMAIYDTMQYVKCDVSTICIGLAASMGAFLLSAGAKGKRLALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPS G  GQ +D+  H + +  +K+R+N I  +N GK+ E+V    +RD+ MSA EA
Sbjct: 121 MIHQPSAGTQGQITDMALHLKRLEVVKKRMNRILAENTGKSIEQVTADCERDNFMSAQEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++D+V+  R
Sbjct: 181 LEYGLIDRVIEKR 193


>gi|167761297|ref|ZP_02433424.1| hypothetical protein CLOSCI_03702 [Clostridium scindens ATCC 35704]
 gi|167660963|gb|EDS05093.1| hypothetical protein CLOSCI_03702 [Clostridium scindens ATCC 35704]
          Length = 193

 Score =  239 bits (609), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 112/193 (58%), Positives = 151/193 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLLK+RI+F+  ++ D  A++I AQLLFLEAE+P+K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLKDRIIFLGEEVTDVSASVIVAQLLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG+AIYDTMQ+IK  I T C+G AASMGS LL+ G KG R ALPNA I
Sbjct: 61  HLYINSPGGSVTAGLAIYDTMQYIKCDIETICIGMAASMGSFLLAGGTKGKRLALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I+  A+ I+K +++LN+I  +N G+  + +    +RD+ MSA EA
Sbjct: 121 MIHQPSGGAQGQATEIQIAAEHILKTRQKLNQILAENTGQPLDVIRIGTERDNFMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D+V+ SR
Sbjct: 181 KAYGLIDEVIKSR 193


>gi|311031871|ref|ZP_07709961.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sp. m3-13]
          Length = 195

 Score =  239 bits (609), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 107/190 (56%), Positives = 148/190 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT+RGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL AE+P K+I
Sbjct: 1   MNLIPTVIEQTSRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG +TAGMAIYDTM FIKP +ST C+G AASMG+ LL+AGEKG RFALPN+ +
Sbjct: 61  SLYINSPGGSITAGMAIYDTMNFIKPNVSTICVGMAASMGAFLLAAGEKGKRFALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN I  +  G+  E + +  DRD+ M+A  A
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILFLREKLNTILSEQTGQPIEVISRDTDRDNFMTAERA 180

Query: 196 CDWGVVDKVL 205
            ++G++DKV+
Sbjct: 181 LEYGLIDKVM 190


>gi|291543930|emb|CBL17039.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ruminococcus
           sp. 18P13]
          Length = 196

 Score =  239 bits (609), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 108/196 (55%), Positives = 152/196 (77%), Gaps = 3/196 (1%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP VVEQT+RGERSYDI+SRLL +RI+ ++  + D  A+L+ AQLL+LE+++P K+I
Sbjct: 1   MSLVPYVVEQTSRGERSYDIFSRLLNDRIIMLSEDVNDTTASLVVAQLLYLESQDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG V+AG AIYDTMQ+IK  +ST C+G AASMG+ LLS+G KG RFALPN+ I
Sbjct: 61  SLYINSPGGSVSAGFAIYDTMQYIKCDVSTICIGLAASMGAFLLSSGAKGKRFALPNSEI 120

Query: 136 LLHQP---SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           ++HQP    GG SGQA+DI+   +++++ K  LN I  +N GK+ E++ +  DRD+ M+A
Sbjct: 121 MIHQPLIGGGGLSGQATDIQIRTENLLRTKENLNRILSENTGKSIEDIRRDTDRDNFMTA 180

Query: 193 SEACDWGVVDKVLMSR 208
           +EA ++G++DKV+  R
Sbjct: 181 NEAMEYGLIDKVIAKR 196


>gi|46198558|ref|YP_004225.1| ATP-dependent Clp protease proteolytic subunit [Thermus
           thermophilus HB27]
 gi|46196180|gb|AAS80598.1| ATP-dependent clp protease proteolytic subunit [Thermus
           thermophilus HB27]
          Length = 212

 Score =  239 bits (609), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 107/188 (56%), Positives = 149/188 (79%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+EQT RGER YDIYSRLLK+RI+F+   I+  +A ++ AQLLFL+A+NP +EI L
Sbjct: 20  VIPYVIEQTARGERVYDIYSRLLKDRIIFLGTPIDAQVANVVVAQLLFLDAQNPNQEIKL 79

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+AIYDTMQF++ P+ST  +G AASM +++L+AGEKG R+ALP+A++++
Sbjct: 80  YINSPGGEVDAGLAIYDTMQFVRAPVSTIVIGMAASMAAVILAAGEKGRRYALPHAKVMI 139

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  G ASDI   AQ+I+K K+ LNEI  K+ G+  E+VEK  DRD+ +SA EA +
Sbjct: 140 HQPWGGVRGTASDIAIQAQEILKAKKLLNEILAKHTGQPLEKVEKDTDRDYYLSAQEALE 199

Query: 198 WGVVDKVL 205
           +G++D+V+
Sbjct: 200 YGLIDQVV 207


>gi|218961379|ref|YP_001741154.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Candidatus Cloacamonas acidaminovorans]
 gi|167730036|emb|CAO80948.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Candidatus Cloacamonas acidaminovorans]
          Length = 194

 Score =  239 bits (609), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 106/193 (54%), Positives = 154/193 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP+V+EQ  R ER+YDIYSRLLK+RIVFV G IED++A  + AQLL LE E+P+++I
Sbjct: 1   MSFVPIVIEQVGRTERAYDIYSRLLKDRIVFVGGVIEDNLANTVVAQLLHLEGEDPERDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG+++AG+AIYDTMQ+IKP +ST C+GQAASM ++LL+AG  G R ALPN+RI
Sbjct: 61  YMYINSPGGIISAGLAIYDTMQYIKPRVSTICIGQAASMAAVLLAAGAPGKRSALPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DIE  A++I+ ++ R+NEI  K+ G++ E++ +  +R++ MSA EA
Sbjct: 121 MIHQPMGGAQGQATDIEIQAKEILYLRGRMNEILHKHSGQSIEKIMEDTERNYFMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++D+V+  R
Sbjct: 181 MEYGIIDEVISVR 193


>gi|291518668|emb|CBK73889.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Butyrivibrio
           fibrisolvens 16/4]
          Length = 194

 Score =  239 bits (609), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 108/193 (55%), Positives = 148/193 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P V+EQ +RGERSYDIYSRLLK+RIVF+  ++ +  A+L  AQLLFLE+E+P K+I
Sbjct: 1   MATIPYVIEQNSRGERSYDIYSRLLKDRIVFLGEEVNETTASLTVAQLLFLESEDPSKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMAIYDTMQ+IK  +ST C+G AASMG+ LL+ G+KG RFALPNA +
Sbjct: 61  HLYINSPGGSVTAGMAIYDTMQYIKCDVSTICIGMAASMGAFLLAGGQKGKRFALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A++I+K + +LN +   N GK YE+V    +RDH + A EA
Sbjct: 121 MIHQPLGGAKGQATEIEIAAKNILKTREKLNRMLAANTGKDYEQVCLDTERDHWLDAQEA 180

Query: 196 CDWGVVDKVLMSR 208
            D+G++D+++  +
Sbjct: 181 LDYGLIDEIITKK 193


>gi|291277236|ref|YP_003517008.1| ATP-dependent clp protease proteolytic subunit [Helicobacter
           mustelae 12198]
 gi|290964430|emb|CBG40280.1| ATP-dependent clp protease proteolytic subunit [Helicobacter
           mustelae 12198]
          Length = 195

 Score =  239 bits (609), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 108/190 (56%), Positives = 149/190 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P V+E+T +GERSYDIYSRLLK+RIV ++G+I D +A+ I AQLLFLEAE+ QK+I
Sbjct: 1   MNYIPYVIERTGKGERSYDIYSRLLKDRIVLLSGEINDMVASSIVAQLLFLEAEDAQKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG VT+  +IYDTM +I+P ++T C+GQAAS G+LLLS+G KG R++LPN+RI
Sbjct: 61  YFYINSPGGAVTSAFSIYDTMHYIRPDVATICVGQAASAGALLLSSGAKGKRYSLPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DIE  A +I+++K+ LNEI   N G++ ++V +  +RD  MSA EA
Sbjct: 121 MIHQPLGGAQGQATDIEIQANEILRLKKILNEILASNTGQSLKKVSQDTERDFFMSAMEA 180

Query: 196 CDWGVVDKVL 205
             +G+VDKVL
Sbjct: 181 QKYGLVDKVL 190


>gi|225164221|ref|ZP_03726495.1| Endopeptidase Clp [Opitutaceae bacterium TAV2]
 gi|224801160|gb|EEG19482.1| Endopeptidase Clp [Opitutaceae bacterium TAV2]
          Length = 222

 Score =  239 bits (609), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 111/192 (57%), Positives = 152/192 (79%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP+V+E T RGERS DIYSRLLK+RI+F+   I+D +A ++ AQLLFL+ E+P+K+I LY
Sbjct: 21  VPIVLENTGRGERSMDIYSRLLKDRIIFIGTPIDDGVANVVIAQLLFLQMEDPKKDIHLY 80

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGVVT GMAIYDT+ F++  + T+C+GQAASM ++LLSAG KG RFALPN+R+++H
Sbjct: 81  INSPGGVVTGGMAIYDTINFLQCDVVTYCVGQAASMATVLLSAGTKGKRFALPNSRVMIH 140

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  GQA+DI   A++I++ +R L+E   ++ GKT E+V+K  DRD+ +SA EA D+
Sbjct: 141 QPSGGAGGQAADITIAAKEILRWRRTLSETIARHTGKTPEQVDKDSDRDYYLSAQEAKDY 200

Query: 199 GVVDKVLMSRID 210
           G+VD V+ S  D
Sbjct: 201 GLVDHVVTSTRD 212


>gi|237736664|ref|ZP_04567145.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           mortiferum ATCC 9817]
 gi|229420526|gb|EEO35573.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           mortiferum ATCC 9817]
          Length = 191

 Score =  239 bits (609), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 109/186 (58%), Positives = 148/186 (79%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P V+E   R ER+YDIYSRLLK+RI+F+  +I+D++A  I AQLLFLEAE+P+K+I +YI
Sbjct: 4   PTVIENNGRSERAYDIYSRLLKDRIIFLGTEIDDNVANAIVAQLLFLEAEDPEKDIIMYI 63

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGGVVTAGMAIYDTM +IKP + T C+GQAASMG+LLLSAG KG RFAL ++RI++HQ
Sbjct: 64  NSPGGVVTAGMAIYDTMNYIKPDVQTVCIGQAASMGALLLSAGAKGKRFALEHSRIMIHQ 123

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQA+DIE  A++I+++K  L++I     GK+ EE+ +  +RD+ MSA EA ++G
Sbjct: 124 PLGGARGQATDIEIQAKEILRMKEMLSQILANVSGKSVEEILRDTERDNYMSAQEAVEYG 183

Query: 200 VVDKVL 205
           ++D+V 
Sbjct: 184 LIDQVF 189


>gi|163815266|ref|ZP_02206643.1| hypothetical protein COPEUT_01426 [Coprococcus eutactus ATCC 27759]
 gi|158449461|gb|EDP26456.1| hypothetical protein COPEUT_01426 [Coprococcus eutactus ATCC 27759]
          Length = 193

 Score =  239 bits (609), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 109/193 (56%), Positives = 149/193 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP VVEQT+RGER++DIYSRLLK+RI+F+  ++ D  A+L+ AQLLFLE+E+P K+I
Sbjct: 1   MALVPYVVEQTSRGERTFDIYSRLLKDRIIFLGDEVNDATASLVIAQLLFLESEDPSKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG VTAGM IYDTM++IK  +ST C G AASMG+ LL+ G KG R+ALPN+ I
Sbjct: 61  SLYINSPGGSVTAGMGIYDTMRYIKCDVSTICCGMAASMGAFLLAGGAKGKRYALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K K +LN++  +N GK  + +    DRD+ M+A EA
Sbjct: 121 MIHQPLGGTQGQATEIEIAARHILKTKEKLNKMLAENTGKPLDVIAADTDRDNWMTADEA 180

Query: 196 CDWGVVDKVLMSR 208
           C +G++D V+ +R
Sbjct: 181 CAYGLIDSVITNR 193


>gi|320450477|ref|YP_004202573.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermus
           scotoductus SA-01]
 gi|320150646|gb|ADW22024.1| ATP-dependent Clp protease, proteolytic, subunit ClpP [Thermus
           scotoductus SA-01]
          Length = 212

 Score =  238 bits (608), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 107/188 (56%), Positives = 149/188 (79%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+EQT RGER YDIYSRLLK+RI+F+   I+  +A +I AQLLFL+A+NP +EI L
Sbjct: 20  VIPYVIEQTARGERVYDIYSRLLKDRIIFLGTPIDSQVANIIVAQLLFLDAQNPNQEIRL 79

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+AIYDTMQF++ P+ST  +G AASM +++L+AGEKG R+ALP++++++
Sbjct: 80  YINSPGGEVDAGLAIYDTMQFVRAPVSTIVIGMAASMAAVILAAGEKGRRYALPHSKVMI 139

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  G ASDI   AQ+I+K K+ LNEI  K+ G+  E+VEK  DRD+ +SA EA +
Sbjct: 140 HQPWGGVRGTASDIAIQAQEILKAKKLLNEILAKHTGQPLEKVEKDTDRDYYLSAQEALE 199

Query: 198 WGVVDKVL 205
           +G++D+V+
Sbjct: 200 YGLIDQVV 207


>gi|260821306|ref|XP_002605974.1| hypothetical protein BRAFLDRAFT_92198 [Branchiostoma floridae]
 gi|229291311|gb|EEN61984.1| hypothetical protein BRAFLDRAFT_92198 [Branchiostoma floridae]
          Length = 236

 Score =  238 bits (608), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 110/197 (55%), Positives = 153/197 (77%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           + S      +VP+VVEQT RGER+YDIYSRLLKERI+ V G I D M++L+ AQLLFL++
Sbjct: 25  QSSAQTLRPMVPIVVEQTGRGERAYDIYSRLLKERIICVMGPISDEMSSLVVAQLLFLQS 84

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           E+ +K + +YINSPGG VTAG+ IYDTMQ+I PP++T+C+GQA SM SLLL+AG  G R 
Sbjct: 85  ESNKKPVHMYINSPGGSVTAGLGIYDTMQYILPPVNTWCVGQACSMASLLLAAGTPGCRH 144

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPN+RI++HQP G  +GQASDI   A++I K+K+++N++YVK+ G+    +E+++DRD 
Sbjct: 145 SLPNSRIMVHQPHGQAAGQASDILIQAEEISKLKQQMNKLYVKHTGQELSVIEESMDRDR 204

Query: 189 IMSASEACDWGVVDKVL 205
            MS  EA  +G++DKVL
Sbjct: 205 FMSPVEAEAFGLIDKVL 221


>gi|307244056|ref|ZP_07526175.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Peptostreptococcus stomatis DSM 17678]
 gi|306492580|gb|EFM64614.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Peptostreptococcus stomatis DSM 17678]
          Length = 194

 Score =  238 bits (607), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 107/193 (55%), Positives = 148/193 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP VVEQ  RGERSYDIYSRLLK+RI+F+  ++ D  A+L+ AQLLFLEA++P K+I
Sbjct: 1   MALVPYVVEQDGRGERSYDIYSRLLKDRIIFLGDEVNDATASLVVAQLLFLEADDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG+AIYDTMQ+IKP +ST C+G AASMG+ LL+AG KG R+ALPN+ I
Sbjct: 61  HLYINSPGGSVTAGLAIYDTMQYIKPDVSTICVGMAASMGAFLLAAGAKGKRYALPNSTI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+D+E H + ++  K +LN I  +  G+ Y+ V++  +RD+ M+A + 
Sbjct: 121 MIHQPLGGSRGQATDVEIHTKFLLNTKEKLNTILSQRTGQPYDVVKENTERDNFMTADQG 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D V+ +R
Sbjct: 181 QAFGIIDHVIENR 193


>gi|239623656|ref|ZP_04666687.1| ATP-dependent Clp protease [Clostridiales bacterium 1_7_47_FAA]
 gi|239521687|gb|EEQ61553.1| ATP-dependent Clp protease [Clostridiales bacterium 1_7_47FAA]
          Length = 193

 Score =  238 bits (607), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 108/190 (56%), Positives = 151/190 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLLKERI+F+  ++ D  A+L+ AQLLFLE+E+P K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLKERIIFLGEEVNDVSASLVVAQLLFLESEDPGKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG V+AG AIYDTM +IK  +ST C+G AASMG+ LL+ G KG RFALPN+ I
Sbjct: 61  HLYINSPGGSVSAGFAIYDTMNYIKCDVSTICIGMAASMGAFLLAGGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I+  A++I+K +++LN+I   N G+  E +E+  +RD+ MSA EA
Sbjct: 121 MIHQPSGGAKGQATEIKIVAENILKTRKKLNDILAANTGRPIEVIERDTERDNYMSAEEA 180

Query: 196 CDWGVVDKVL 205
            ++G++D+++
Sbjct: 181 KEYGLIDEII 190


>gi|325107893|ref|YP_004268961.1| ATP-dependent Clp protease proteolytic subunit ClpP [Planctomyces
           brasiliensis DSM 5305]
 gi|324968161|gb|ADY58939.1| ATP-dependent Clp protease proteolytic subunit ClpP [Planctomyces
           brasiliensis DSM 5305]
          Length = 202

 Score =  238 bits (607), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 106/188 (56%), Positives = 151/188 (80%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP VVE+  R ER+ DIYSRLLK+RI+F+  Q+ D ++  I AQLL+L+ ++P+ +I +
Sbjct: 4   LVPYVVEKNGREERAMDIYSRLLKDRIIFLGTQVNDTISNSIVAQLLYLQFDDPKSDIHM 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TAGMAIYDTMQFI   ++T+C+GQAASMG++LL+AG +G R ALPN+RI++
Sbjct: 64  YINSPGGSITAGMAIYDTMQFISCDVATYCLGQAASMGAVLLAAGAEGKRAALPNSRIMI 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP  G  G A+D+E HA++++K+K+R+NEI  K+ G++ EE+E+  DRD+ M+A EA D
Sbjct: 124 HQPLAGMEGTATDLEIHAREVLKVKKRMNEILQKHTGRSLEELERDTDRDNFMTAEEARD 183

Query: 198 WGVVDKVL 205
           +G+VDKVL
Sbjct: 184 YGLVDKVL 191


>gi|257865163|ref|ZP_05644816.1| peptidase S14 [Enterococcus casseliflavus EC30]
 gi|257871487|ref|ZP_05651140.1| peptidase S14 [Enterococcus casseliflavus EC10]
 gi|257874785|ref|ZP_05654438.1| peptidase S14 [Enterococcus casseliflavus EC20]
 gi|325571575|ref|ZP_08147075.1| ATP-dependent Clp protease, protease subunit [Enterococcus
           casseliflavus ATCC 12755]
 gi|257799097|gb|EEV28149.1| peptidase S14 [Enterococcus casseliflavus EC30]
 gi|257805651|gb|EEV34473.1| peptidase S14 [Enterococcus casseliflavus EC10]
 gi|257808951|gb|EEV37771.1| peptidase S14 [Enterococcus casseliflavus EC20]
 gi|325156051|gb|EGC68247.1| ATP-dependent Clp protease, protease subunit [Enterococcus
           casseliflavus ATCC 12755]
          Length = 196

 Score =  238 bits (607), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 108/192 (56%), Positives = 149/192 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQ++RGER+YDIYSRLLK+RI+ ++GQ+ D +A  I AQLLFL+A++ +K+I
Sbjct: 1   MNLIPTVIEQSSRGERAYDIYSRLLKDRIIMLSGQVTDDLANSIIAQLLFLDAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG+AI+DTM FIK  + T  MG AASMGS LL+AGEKG RFALPNA I
Sbjct: 61  YLYINSPGGSVTAGLAIFDTMNFIKADVQTIVMGMAASMGSFLLTAGEKGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+  + RLN+I  +  G+  E +E+  DRD+ M+A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAARHILATRERLNKILSERTGQPIEVIERDTDRDNFMTAQEA 180

Query: 196 CDWGVVDKVLMS 207
            D+G++D+++ S
Sbjct: 181 KDYGLIDEIMES 192


>gi|289435727|ref|YP_003465599.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
 gi|289171971|emb|CBH28517.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
          Length = 198

 Score =  238 bits (607), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 106/193 (54%), Positives = 149/193 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT+RGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL+A++P+K+I
Sbjct: 1   MNLIPTVIEQTSRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG ++AGMAIYDTM F+K  + T  MG AASMGS LL+AG  G RFALPNA I
Sbjct: 61  FLYINSPGGSISAGMAIYDTMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+KIK R+N I     G+ YE + +  DRD+ M+A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAARHILKIKERMNTIMADKTGQPYEVIARDTDRDNFMTAQEA 180

Query: 196 CDWGVVDKVLMSR 208
            D+G++D++++++
Sbjct: 181 KDYGLIDEIIVNK 193


>gi|16804506|ref|NP_465991.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes EGD-e]
 gi|46908640|ref|YP_015029.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes str. 4b F2365]
 gi|47092754|ref|ZP_00230539.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           monocytogenes str. 4b H7858]
 gi|47096060|ref|ZP_00233661.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           monocytogenes str. 1/2a F6854]
 gi|224503291|ref|ZP_03671598.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes FSL R2-561]
 gi|226225016|ref|YP_002759123.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes Clip81459]
 gi|254825410|ref|ZP_05230411.1| protease ClpP [Listeria monocytogenes FSL J1-194]
 gi|254828043|ref|ZP_05232730.1| ATP-dependent Clp protease [Listeria monocytogenes FSL N3-165]
 gi|254831109|ref|ZP_05235764.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes 10403S]
 gi|254853529|ref|ZP_05242877.1| endopeptidase Clp [Listeria monocytogenes FSL R2-503]
 gi|254900394|ref|ZP_05260318.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes J0161]
 gi|254913367|ref|ZP_05263379.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes J2818]
 gi|254932291|ref|ZP_05265650.1| endopeptidase Clp [Listeria monocytogenes HPB2262]
 gi|254937748|ref|ZP_05269445.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes F6900]
 gi|254991680|ref|ZP_05273870.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes FSL J2-064]
 gi|255521328|ref|ZP_05388565.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes FSL J1-175]
 gi|284802906|ref|YP_003414771.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes 08-5578]
 gi|284996047|ref|YP_003417815.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes 08-5923]
 gi|300765033|ref|ZP_07075021.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           monocytogenes FSL N1-017]
 gi|17374630|sp|Q9RQI6|CLPP_LISMO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|60389670|sp|Q71WV9|CLPP_LISMF RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|6166251|gb|AAF04744.1|AF102775_1 protease ClpP [Listeria monocytogenes]
 gi|16411956|emb|CAD00546.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes EGD-e]
 gi|46881912|gb|AAT05206.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|47015521|gb|EAL06453.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           monocytogenes str. 1/2a F6854]
 gi|47018842|gb|EAL09590.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           monocytogenes str. 4b H7858]
 gi|225877478|emb|CAS06192.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258600427|gb|EEW13752.1| ATP-dependent Clp protease [Listeria monocytogenes FSL N3-165]
 gi|258606902|gb|EEW19510.1| endopeptidase Clp [Listeria monocytogenes FSL R2-503]
 gi|258610351|gb|EEW22959.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes F6900]
 gi|284058468|gb|ADB69409.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes 08-5578]
 gi|284061514|gb|ADB72453.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes 08-5923]
 gi|293583848|gb|EFF95880.1| endopeptidase Clp [Listeria monocytogenes HPB2262]
 gi|293591373|gb|EFF99707.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes J2818]
 gi|293594653|gb|EFG02414.1| protease ClpP [Listeria monocytogenes FSL J1-194]
 gi|300514333|gb|EFK41392.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           monocytogenes FSL N1-017]
 gi|328465333|gb|EGF36590.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes 1816]
 gi|328471278|gb|EGF42178.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes 220]
          Length = 198

 Score =  238 bits (607), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 106/193 (54%), Positives = 149/193 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT+RGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL+A++P+K+I
Sbjct: 1   MNLIPTVIEQTSRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG ++AGMAIYDTM F+K  + T  MG AASMGS LL+AG  G RFALPNA I
Sbjct: 61  FLYINSPGGSISAGMAIYDTMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+KIK R+N I  +  G+ YE + +  DRD+ M+A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAARHILKIKERMNTIMAEKTGQPYEVIARDTDRDNFMTAQEA 180

Query: 196 CDWGVVDKVLMSR 208
            D+G++D +++++
Sbjct: 181 KDYGLIDDIIINK 193


>gi|217963429|ref|YP_002349107.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           monocytogenes HCC23]
 gi|290893656|ref|ZP_06556637.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes FSL J2-071]
 gi|217332699|gb|ACK38493.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           monocytogenes HCC23]
 gi|290556729|gb|EFD90262.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes FSL J2-071]
 gi|307571996|emb|CAR85175.1| ATP-dependent Clp protease, proteolytic subunit [Listeria
           monocytogenes L99]
          Length = 198

 Score =  238 bits (607), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 106/193 (54%), Positives = 149/193 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT+RGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL+A++P+K+I
Sbjct: 1   MNLIPTVIEQTSRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG ++AGMAIYDTM F+K  + T  MG AASMGS LL+AG  G RFALPNA I
Sbjct: 61  FLYINSPGGSISAGMAIYDTMNFVKADVQTIGMGMAASMGSFLLTAGASGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+KIK R+N I  +  G+ YE + +  DRD+ M+A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAARHILKIKERMNTIMAEKTGQPYEVIARDTDRDNFMTAQEA 180

Query: 196 CDWGVVDKVLMSR 208
            D+G++D +++++
Sbjct: 181 KDYGLIDDIIINK 193


>gi|16801674|ref|NP_471942.1| ATP-dependent Clp protease proteolytic subunit [Listeria innocua
           Clip11262]
 gi|20137847|sp|Q928C4|CLPP_LISIN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|16415149|emb|CAC97839.1| ATP-dependent Clp protease proteolytic subunit [Listeria innocua
           Clip11262]
 gi|313622455|gb|EFR92900.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           innocua FSL J1-023]
          Length = 198

 Score =  238 bits (607), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 106/193 (54%), Positives = 149/193 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT+RGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL+A++P+K+I
Sbjct: 1   MNLIPTVIEQTSRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG ++AGMAIYDTM F+K  + T  MG AASMGS LL+AG  G RFALPNA I
Sbjct: 61  FLYINSPGGSISAGMAIYDTMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+KIK R+N I  +  G+ YE + +  DRD+ M+A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAARHILKIKERMNTIMAEKTGQPYEVIARDTDRDNFMTAQEA 180

Query: 196 CDWGVVDKVLMSR 208
            D+G++D +++++
Sbjct: 181 KDYGLIDDIIVNK 193


>gi|315283588|ref|ZP_07871740.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           marthii FSL S4-120]
 gi|313612769|gb|EFR86759.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           marthii FSL S4-120]
          Length = 198

 Score =  238 bits (606), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 106/193 (54%), Positives = 149/193 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT+RGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL+A++P+K+I
Sbjct: 1   MNLIPTVIEQTSRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG ++AGMAIYDTM F+K  + T  MG AASMGS LL+AG  G RFALPNA I
Sbjct: 61  FLYINSPGGSISAGMAIYDTMNFVKADVQTIGMGMAASMGSFLLTAGASGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+KIK R+N I  +  G+ YE + +  DRD+ M+A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAARHILKIKERMNTIMAEKTGQPYEVIARDTDRDNFMTAQEA 180

Query: 196 CDWGVVDKVLMSR 208
            D+G++D +++++
Sbjct: 181 KDYGLIDDIIVNK 193


>gi|223938520|ref|ZP_03630412.1| Endopeptidase Clp [bacterium Ellin514]
 gi|223892782|gb|EEF59251.1| Endopeptidase Clp [bacterium Ellin514]
          Length = 215

 Score =  238 bits (606), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 114/195 (58%), Positives = 151/195 (77%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQT RGER YDIYSRLL +RIVF+   ++D +A LI AQLLFL+  +P+K+I L
Sbjct: 10  LVPMVVEQTGRGERGYDIYSRLLVDRIVFLGTPVDDMVANLIIAQLLFLQMSDPKKDIHL 69

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+AIYDTMQF+   ++T+C+GQAASMG++LL  G KG R+ALPNA I++
Sbjct: 70  YINSPGGSVTAGLAIYDTMQFLTCDVNTYCIGQAASMGAVLLCGGTKGKRYALPNANIMI 129

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQ  GG  GQASD+E   + ++++K+RLN I  K+ GK  E+VEK  DRD+ M++ EA  
Sbjct: 130 HQVLGGAEGQASDVEIRVKYMLRLKQRLNGIISKHTGKPIEQVEKDCDRDNFMTSDEAKA 189

Query: 198 WGVVDKVLMSRIDIE 212
           +G+VD+V+ SR +I 
Sbjct: 190 YGLVDEVVQSRKEIH 204


>gi|313632032|gb|EFR99140.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           seeligeri FSL N1-067]
 gi|313636395|gb|EFS02167.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           seeligeri FSL S4-171]
          Length = 198

 Score =  238 bits (606), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 106/193 (54%), Positives = 148/193 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT+RGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL+A++P+K+I
Sbjct: 1   MNLIPTVIEQTSRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG ++AGMAIYDTM F+K  + T  MG AASMGS LL+AG  G RFALPNA I
Sbjct: 61  FLYINSPGGSISAGMAIYDTMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+KIK R+N I     G+ YE + +  DRD+ M+A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAARHILKIKERMNTIMADKTGQPYEVIARDTDRDNFMTAQEA 180

Query: 196 CDWGVVDKVLMSR 208
            D+G++D +++++
Sbjct: 181 KDYGLIDDIIVNK 193


>gi|229541478|ref|ZP_04430538.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           coagulans 36D1]
 gi|229325898|gb|EEN91573.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           coagulans 36D1]
          Length = 196

 Score =  237 bits (605), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 106/193 (54%), Positives = 150/193 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RI+ +   I+D+++  I +QLLFLEAENP+K+I
Sbjct: 1   MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVSNSIVSQLLFLEAENPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG+AIYDTMQ IKP + T C+G AASMGS+LL+AG KG R+ALPN+ +
Sbjct: 61  YLYINSPGGSVTAGLAIYDTMQIIKPDVQTICVGMAASMGSVLLTAGTKGKRYALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+  + +LN+I   + G+  E +E+  DRD+ MSA +A
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKHILYTRAKLNKILSDHTGQPIEVIERDTDRDNFMSAEKA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++D ++  +
Sbjct: 181 KEYGLIDHIMTKK 193


>gi|108757731|ref|YP_634562.1| ATP-dependent Clp protease proteolytic subunit [Myxococcus xanthus
           DK 1622]
 gi|3023519|sp|O30612|CLPP2_MYXXD RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|2384690|gb|AAB97819.1| proteosome major subunit [Myxococcus xanthus DK 1622]
 gi|108461611|gb|ABF86796.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Myxococcus
           xanthus DK 1622]
          Length = 203

 Score =  237 bits (605), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 107/187 (57%), Positives = 150/187 (80%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP V+E T+RGER+YD+YSRLLK+RI+ +   + D +A +I AQLLFLE+E+P K I+LY
Sbjct: 3   VPFVIETTHRGERAYDLYSRLLKDRIIMLGTPVNDDVANIIVAQLLFLESEDPDKGINLY 62

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDTMQ++K P+ST C+GQAASMG+LLL AG KG R+ALPN+RI++H
Sbjct: 63  INSPGGSVTAGLAIYDTMQYVKCPVSTICVGQAASMGALLLLAGAKGKRYALPNSRIMIH 122

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA+DI+  A++I++++  +N + VK+ G T E +EK  +RD+ MSA +A  +
Sbjct: 123 QPLGGAQGQATDIDIQAKEILRLRSYINGLIVKHTGHTIERIEKDTERDYFMSAEDARQY 182

Query: 199 GVVDKVL 205
           G++D+V+
Sbjct: 183 GLIDEVV 189


>gi|153854553|ref|ZP_01995823.1| hypothetical protein DORLON_01818 [Dorea longicatena DSM 13814]
 gi|149752862|gb|EDM62793.1| hypothetical protein DORLON_01818 [Dorea longicatena DSM 13814]
          Length = 193

 Score =  237 bits (605), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 111/193 (57%), Positives = 149/193 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLLK+RI+F+  ++ D  A++I AQLLFLEAE+P+K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLKDRIIFLGEEVTDVSASVIVAQLLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMAIYDTMQ+IK  I T C+G AASMGS LL+ G KG R ALPN+ I
Sbjct: 61  HLYINSPGGSVTAGMAIYDTMQYIKCDIETICIGMAASMGSFLLTGGTKGKRLALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++I+  A  I+K +++LN+I  +N G+  E +    +RD+ M+A EA
Sbjct: 121 MIHQPLGGAQGQATEIQIAADHILKTRQKLNQILAENTGQPLEVINADTERDNFMTAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D+V+ SR
Sbjct: 181 KAYGLIDEVIKSR 193


>gi|116873833|ref|YP_850614.1| ATP-dependent Clp protease proteolytic subunit [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|116742711|emb|CAK21835.1| ATP-dependent Clp protease proteolytic subunit [Listeria welshimeri
           serovar 6b str. SLCC5334]
          Length = 198

 Score =  237 bits (605), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 106/193 (54%), Positives = 149/193 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT+RGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL+A++P+K+I
Sbjct: 1   MNLIPTVIEQTSRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG ++AGMAIYDTM F+K  + T  MG AASMGS LL+AG  G RFALPNA I
Sbjct: 61  FLYINSPGGSISAGMAIYDTMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+KIK R+N I  +  G+ YE + +  DRD+ M+A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAARHILKIKERMNTIMSEKTGQPYEVIARDTDRDNFMTAQEA 180

Query: 196 CDWGVVDKVLMSR 208
            D+G++D +++++
Sbjct: 181 KDYGLIDDIIVNK 193


>gi|300813057|ref|ZP_07093435.1| Clp protease [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|313123331|ref|YP_004033590.1| ATP-dependent clp protease proteolytic subunit [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|300495898|gb|EFK31042.1| Clp protease [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|312279894|gb|ADQ60613.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 194

 Score =  237 bits (605), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 104/191 (54%), Positives = 150/191 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQT RGER+YDIYSRLLK+RI+ ++G++ D MA  I AQLLFL+A++  K+I +
Sbjct: 2   LVPTVIEQTARGERAYDIYSRLLKDRIIMLSGEVNDQMANSIIAQLLFLDAQDNTKDIYM 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+T+GMAI DTM FIK P+ST   G AASM S++L+ GEKG RFALP+A +L+
Sbjct: 62  YINSPGGVITSGMAIVDTMNFIKSPVSTIATGMAASMASIILAEGEKGKRFALPHATVLI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA++I+  A++I+K ++ +NEI  K+ G+  E +++  +RDH M+A EA D
Sbjct: 122 HQPLGGAQGQATEIQIAAEEILKTRKMINEILAKDSGQDIETIKRDTERDHYMTAQEAKD 181

Query: 198 WGVVDKVLMSR 208
           +G++D +++++
Sbjct: 182 YGLIDDIMVNQ 192


>gi|196010065|ref|XP_002114897.1| expressed hypothetical protein [Trichoplax adhaerens]
 gi|190582280|gb|EDV22353.1| expressed hypothetical protein [Trichoplax adhaerens]
          Length = 226

 Score =  237 bits (605), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 108/199 (54%), Positives = 158/199 (79%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+V+E+T RGE++YDIYSRLLK+RIV V G + D +A+L+ AQLLFL+AE+ +  I +
Sbjct: 27  LVPIVIEKTGRGEQAYDIYSRLLKDRIVCVMGPVTDDLASLVVAQLLFLQAESSKLPIHM 86

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VT+G+ IYDTMQ+++PPI T+C+GQAASMGSLLL+AG+ G R +LPN+RI++
Sbjct: 87  YINSPGGSVTSGLGIYDTMQYVEPPIYTWCVGQAASMGSLLLAAGDNGKRHSLPNSRIMI 146

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSG   GQA+DI   A++I+K+K+ +N++Y K+ G++ E +E+ ++RD  M  +EA  
Sbjct: 147 HQPSGQAFGQATDIAIQAEEIIKLKKLINDLYKKHTGQSIENIEEAMERDKYMFPNEAAA 206

Query: 198 WGVVDKVLMSRIDIEEKSK 216
           +G++DKVL     I+E ++
Sbjct: 207 FGLIDKVLSRPQAIKEMTE 225


>gi|21672724|ref|NP_660791.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
           str. Sg (Schizaphis graminum)]
 gi|25008301|sp|Q8K990|CLPP_BUCAP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|21623368|gb|AAM68002.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
           str. Sg (Schizaphis graminum)]
          Length = 197

 Score =  237 bits (605), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 114/191 (59%), Positives = 154/191 (80%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+PMVVEQ +RGERSYDIYSRLLKERI+F+TG IED+MA+ I AQ+LFLEAE+  K+I L
Sbjct: 7   LIPMVVEQHSRGERSYDIYSRLLKERIIFITGTIEDNMASSIVAQMLFLEAESLDKDIFL 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG++T+GM+IYDTMQFIKP ++T C+GQA SM + LLS+G KG R  LPNARI++
Sbjct: 67  YINSPGGIITSGMSIYDTMQFIKPDVNTICIGQACSMAAFLLSSGTKGKRSCLPNARIMI 126

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG+ GQASDI  HA++I K+K++LN++   N G++ +++ K  +RD  +SA E+  
Sbjct: 127 HQPLGGYQGQASDIAIHAEEINKMKKKLNKLMSLNTGQSIKKINKDTERDCFLSAHESIK 186

Query: 198 WGVVDKVLMSR 208
           +G++D +L  R
Sbjct: 187 YGLIDLILTQR 197


>gi|166031009|ref|ZP_02233838.1| hypothetical protein DORFOR_00690 [Dorea formicigenerans ATCC
           27755]
 gi|166029276|gb|EDR48033.1| hypothetical protein DORFOR_00690 [Dorea formicigenerans ATCC
           27755]
          Length = 193

 Score =  237 bits (605), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 111/193 (57%), Positives = 147/193 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLLK+RI+F   ++ D  A++  AQLLFLEAE+P+K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLKDRIIFFGEEVTDASASVAIAQLLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG V+AG+AIYDTMQ+IK  I T C+G AASMGS LL+ G KG R ALPN+ I
Sbjct: 61  HLYINSPGGSVSAGLAIYDTMQYIKCDIETICIGMAASMGSFLLAGGTKGKRLALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I+  A+ I+K + RLN I  +N G+  E + +  DRD+ MSA EA
Sbjct: 121 MIHQPSGGAQGQATEIQIAAEHILKTRERLNRILAENTGQPLEVISRETDRDNFMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D+V+  R
Sbjct: 181 KAFGLIDEVITRR 193


>gi|150020876|ref|YP_001306230.1| ATP-dependent Clp protease proteolytic subunit [Thermosipho
           melanesiensis BI429]
 gi|149793397|gb|ABR30845.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermosipho
           melanesiensis BI429]
          Length = 202

 Score =  237 bits (604), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 107/187 (57%), Positives = 147/187 (78%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VPMVVE T R ER+YDIYSRLLK+RIVF+   I+DH+A LI AQLLFLEAE+P K+I LY
Sbjct: 9   VPMVVENTGRYERAYDIYSRLLKDRIVFLGSAIDDHVANLIVAQLLFLEAEDPDKDIQLY 68

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG V+AG+AIYDTMQ++K  ++T C+GQAASMG++LL+ G KG RF+LPN+RI++H
Sbjct: 69  INSPGGSVSAGLAIYDTMQYVKCDVTTICIGQAASMGAVLLAGGTKGKRFSLPNSRIMIH 128

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  G A D+E   +++++IK ++NEI   + G+  E +E+  DRD  M+  +A ++
Sbjct: 129 QPLGGAEGPAKDVEIMTKELLRIKNKINEILSLHTGQPIERIERDTDRDFFMTPEDALEY 188

Query: 199 GVVDKVL 205
           G++DKV+
Sbjct: 189 GLIDKVI 195


>gi|295705211|ref|YP_003598286.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bacillus
           megaterium DSM 319]
 gi|294802870|gb|ADF39936.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           megaterium DSM 319]
          Length = 338

 Score =  237 bits (604), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 105/193 (54%), Positives = 151/193 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L P VVEQT++GER+YDIYSRLL +R++ +TG++ D +AT I AQLLFL+AENP+K+I
Sbjct: 146 MNLTPYVVEQTSKGERAYDIYSRLLLDRVIMLTGEVTDEVATSIIAQLLFLDAENPEKDI 205

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGG +TAGMAI+DTMQ I+  +ST C+G AASMGS LL+ G+KG RFALPN+ +
Sbjct: 206 SIYINSPGGSITAGMAIFDTMQLIRADVSTLCIGLAASMGSFLLAGGQKGKRFALPNSEM 265

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+++K  LNE+  +  G++   ++K  DRD   +A EA
Sbjct: 266 MIHQPLGGAKGQAAEIEIRAKRILRLKDHLNELLSERTGQSLSTIKKDTDRDTFFTADEA 325

Query: 196 CDWGVVDKVLMSR 208
            ++G++DK+L+ +
Sbjct: 326 KEYGMIDKILVHQ 338


>gi|168701667|ref|ZP_02733944.1| ATP-dependent clp protease proteolytic subunit [Gemmata
           obscuriglobus UQM 2246]
          Length = 205

 Score =  237 bits (604), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 108/190 (56%), Positives = 151/190 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVE   R ER+YDIYSRLLK+RI+F+ G ++D MA LI AQ+L+L+ E+P+++I
Sbjct: 1   MPLVPIVVESRGREERAYDIYSRLLKDRIIFMQGVVQDDMANLIVAQMLYLQFEDPKRDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG VTAGMAIYDTMQFI   ++T+C+GQAASMG++LL+AG KG R+ALP+AR+
Sbjct: 61  SLYINSPGGSVTAGMAIYDTMQFITCDVATYCIGQAASMGAMLLTAGTKGKRYALPHARV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPS G  G A +I  HA++ ++ K  LN++   +CG+  E++ K  DRD+ MSA EA
Sbjct: 121 MIHQPSAGSEGTAEEILIHAKEFLRTKETLNKLMADHCGQPVEKILKGTDRDNFMSAQEA 180

Query: 196 CDWGVVDKVL 205
            ++G++DKVL
Sbjct: 181 REFGLIDKVL 190


>gi|315453779|ref|YP_004074049.1| ATP-dependent clp protease proteolytic subunit [Helicobacter felis
           ATCC 49179]
 gi|315132831|emb|CBY83459.1| ATP-dependent clp protease proteolytic subunit [Helicobacter felis
           ATCC 49179]
          Length = 197

 Score =  237 bits (604), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 108/188 (57%), Positives = 150/188 (79%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+E+T RGERSYDIYSRLLK+RIV ++G+I D +A+ I AQLLFLEAE+P+K+I+LY
Sbjct: 4   IPFVIEKTGRGERSYDIYSRLLKDRIVLLSGEINDAVASSIVAQLLFLEAEDPEKDINLY 63

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VT+G +IYDTM +I P I T C+GQAASMG+ LLS G KG RF+LP++RI++H
Sbjct: 64  INSPGGSVTSGFSIYDTMNYIHPDICTICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIH 123

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQAS++  + ++I+++K  LN+I   N G+  +++E+  DRD  MSA EA ++
Sbjct: 124 QPLGGTQGQASNLAIYTKEILRLKDLLNQIMATNTGQPLDKIEQDTDRDFFMSALEAKEY 183

Query: 199 GVVDKVLM 206
           G+VD+VL+
Sbjct: 184 GLVDEVLV 191


>gi|325684491|gb|EGD26655.1| ATP-dependent Clp protease, protease subunit [Lactobacillus
           delbrueckii subsp. lactis DSM 20072]
          Length = 205

 Score =  237 bits (604), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 104/191 (54%), Positives = 150/191 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQT RGER+YDIYSRLLK+RI+ ++G++ D MA  I AQLLFL+A++  K+I +
Sbjct: 13  LVPTVIEQTARGERAYDIYSRLLKDRIIMLSGEVNDQMANSIIAQLLFLDAQDNTKDIYM 72

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+T+GMAI DTM FIK P+ST   G AASM S++L+ GEKG RFALP+A +L+
Sbjct: 73  YINSPGGVITSGMAIVDTMNFIKSPVSTIATGMAASMASIILAEGEKGKRFALPHATVLI 132

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA++I+  A++I+K ++ +NEI  K+ G+  E +++  +RDH M+A EA D
Sbjct: 133 HQPLGGAQGQATEIQIAAEEILKTRKMINEILAKDSGQDIETIKRDTERDHYMTAQEAKD 192

Query: 198 WGVVDKVLMSR 208
           +G++D +++++
Sbjct: 193 YGLIDDIMVNQ 203


>gi|315304656|ref|ZP_07874875.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           ivanovii FSL F6-596]
 gi|313626974|gb|EFR95888.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           ivanovii FSL F6-596]
          Length = 191

 Score =  237 bits (604), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 106/191 (55%), Positives = 147/191 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT+RGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL+A++P+K+I
Sbjct: 1   MNLIPTVIEQTSRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG ++AGMAIYDTM F+K  + T  MG AASMGS LL+AG  G RFALPNA I
Sbjct: 61  FLYINSPGGSISAGMAIYDTMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+KIK R+N I  +  G+ YE + +  DRD+ M+A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAARHILKIKERMNTIMAEKTGQPYEVIARDTDRDNFMTAQEA 180

Query: 196 CDWGVVDKVLM 206
            D+G++D +++
Sbjct: 181 KDYGLIDDIIV 191


>gi|104773729|ref|YP_618709.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116243144|sp|Q1GB31|CLPP_LACDA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|103422810|emb|CAI97454.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 194

 Score =  237 bits (604), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 104/191 (54%), Positives = 149/191 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQT RGER+YDIYSRLLK+RI+ ++G + D MA  I AQLLFL+A++  K+I +
Sbjct: 2   LVPTVIEQTARGERAYDIYSRLLKDRIIMLSGDVNDQMANSIIAQLLFLDAQDNTKDIYM 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+T+GMAI DTM FIK P+ST   G AASM S++L+ GEKG RFALP+A +L+
Sbjct: 62  YINSPGGVITSGMAIVDTMNFIKSPVSTIATGMAASMASIILAEGEKGKRFALPHATVLI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA++I+  A++I+K ++ +NEI  K+ G+  E +++  +RDH M+A EA D
Sbjct: 122 HQPLGGAQGQATEIQIAAEEILKTRKMINEILAKDSGQDIETIKRDTERDHYMTAQEAKD 181

Query: 198 WGVVDKVLMSR 208
           +G++D +++++
Sbjct: 182 YGLIDNIMVNQ 192


>gi|167750809|ref|ZP_02422936.1| hypothetical protein EUBSIR_01791 [Eubacterium siraeum DSM 15702]
 gi|167656244|gb|EDS00374.1| hypothetical protein EUBSIR_01791 [Eubacterium siraeum DSM 15702]
 gi|291530696|emb|CBK96281.1| ATP-dependent Clp protease proteolytic subunit ClpP [Eubacterium
           siraeum 70/3]
 gi|291557795|emb|CBL34912.1| ATP-dependent Clp protease proteolytic subunit ClpP [Eubacterium
           siraeum V10Sc8a]
          Length = 195

 Score =  236 bits (603), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 108/195 (55%), Positives = 148/195 (75%), Gaps = 2/195 (1%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT RGER+YDI+SRLL +RI+ +  ++ +  A L+ AQLLFLE ++P K+I
Sbjct: 1   MSLVPTVIEQTGRGERAYDIFSRLLNDRIIMLNEEVNNVTAGLVVAQLLFLEGQDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG ++AGMAIYDTM +IK  +ST C+G AASMG+ LLS+G KG RF LPN+ +
Sbjct: 61  SLYINSPGGSISAGMAIYDTMNYIKCDVSTICVGMAASMGAFLLSSGAKGKRFCLPNSEV 120

Query: 136 LLHQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           ++HQP  SGG SGQ +DI  HA+ + K +  L +I  +NCGK+YE++ K  +RD+ +SA 
Sbjct: 121 MIHQPLISGGLSGQQTDITIHAKYLEKTRETLEKIMAENCGKSYEQLHKDCERDNFLSAE 180

Query: 194 EACDWGVVDKVLMSR 208
           EAC +G+VDKV+  R
Sbjct: 181 EACAYGLVDKVIAKR 195


>gi|302671762|ref|YP_003831722.1| ATP-dependent Clp protease proteolytic subunit ClpP [Butyrivibrio
           proteoclasticus B316]
 gi|302396235|gb|ADL35140.1| ATP-dependent Clp protease proteolytic subunit ClpP [Butyrivibrio
           proteoclasticus B316]
          Length = 201

 Score =  236 bits (603), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 109/201 (54%), Positives = 150/201 (74%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT+RGERSYDIYSRLLKERIVF+  ++    A+ I AQLLFLEAE+P K+I
Sbjct: 1   MSLIPYVIEQTSRGERSYDIYSRLLKERIVFLGEEVNAASASTIVAQLLFLEAEDPNKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG +++GMAIYDTM +IK  +ST C+G AASMG+ LL+ G KG R ALPNA +
Sbjct: 61  HMYINSPGGEISSGMAIYDTMNYIKCDVSTICIGMAASMGAFLLAGGAKGKRMALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K K ++N +   N GK+YE+V    +RD+ +SA EA
Sbjct: 121 MIHQPLGGTQGQATEIEIAAKHILKTKEKMNRMLAANTGKSYEQVAADTERDNWLSAQEA 180

Query: 196 CDWGVVDKVLMSRIDIEEKSK 216
            D+G++D ++ +R   +E  K
Sbjct: 181 LDYGLIDSIIENRPSEKEDKK 201


>gi|292670226|ref|ZP_06603652.1| ATP-dependent Clp protease proteolytic subunit [Selenomonas noxia
           ATCC 43541]
 gi|292648178|gb|EFF66150.1| ATP-dependent Clp protease proteolytic subunit [Selenomonas noxia
           ATCC 43541]
          Length = 197

 Score =  236 bits (603), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 106/185 (57%), Positives = 151/185 (81%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MVVE ++RGER+YDIYSRLLKERI+F+ G I+D +A ++ AQ+LFLE+E+P K+I LYIN
Sbjct: 1   MVVENSSRGERAYDIYSRLLKERIIFLGGPIDDSVANVVVAQMLFLESEDPDKDIHLYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGGVVTAG+AIYDTMQ+IKP +ST C+GQAASMGS+LL+AG KG R+ALP+ARI++HQP
Sbjct: 61  SPGGVVTAGLAIYDTMQYIKPDVSTICIGQAASMGSILLTAGAKGKRYALPHARIMIHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            GG  GQ++DI+  A++I++++   N I  ++ G+  +++    +RD+ MSA EA  +G+
Sbjct: 121 LGGAQGQSTDIQIQAKEILRLREVGNHILARHTGQDEKKINVDTERDNFMSAEEAKAYGL 180

Query: 201 VDKVL 205
           +D+V+
Sbjct: 181 IDEVV 185


>gi|116513727|ref|YP_812633.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|122275503|sp|Q04BH7|CLPP_LACDB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|116093042|gb|ABJ58195.1| ATP-dependent Clp protease proteolytic subunit ClpP [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|325125381|gb|ADY84711.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           delbrueckii subsp. bulgaricus 2038]
          Length = 194

 Score =  236 bits (603), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 104/191 (54%), Positives = 149/191 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQT RGER+YDIYSRLLK+RI+ ++G + D MA  I AQLLFL+A++  K+I +
Sbjct: 2   LVPTVIEQTARGERAYDIYSRLLKDRIIMLSGDVNDQMANSIIAQLLFLDAQDNTKDIYM 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+T+GMAI DTM FIK P+ST   G AASM S++L+ GEKG RFALP+A +L+
Sbjct: 62  YINSPGGVITSGMAIVDTMNFIKSPVSTIATGMAASMASIILAEGEKGKRFALPHATVLI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA++I+  A++I+K ++ +NEI  K+ G+  E +++  +RDH M+A EA D
Sbjct: 122 HQPLGGAQGQATEIQIAAEEILKTRKMINEILAKDSGQDIETIKRDTERDHYMTAQEAKD 181

Query: 198 WGVVDKVLMSR 208
           +G++D +++++
Sbjct: 182 YGLIDDIMVNQ 192


>gi|313680148|ref|YP_004057887.1| ATP-dependent clp protease proteolytic subunit clpp [Oceanithermus
           profundus DSM 14977]
 gi|313152863|gb|ADR36714.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oceanithermus
           profundus DSM 14977]
          Length = 194

 Score =  236 bits (603), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 109/188 (57%), Positives = 145/188 (77%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP V+EQT RGER YDIYSRLLK+RI+F+   I+  +A  I AQ+LFLEA+NP +EI L
Sbjct: 2   IVPYVIEQTARGERVYDIYSRLLKDRIIFLGTPIDSQVANTIVAQMLFLEAQNPNQEIKL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+AIYDTMQ++K P++T  +G AASMG+ LL+AGE G R+ALP+AR+++
Sbjct: 62  YINSPGGDVYAGLAIYDTMQYVKSPVATIVVGMAASMGAFLLAAGEAGQRYALPHARVMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DI   A+ I+K K+ LNE+  K+ G+  E+VE   DRD  M+A EA D
Sbjct: 122 HQPWGGAQGQATDIAIQAEQILKSKKLLNELLAKHTGQPVEKVEADSDRDFWMTADEARD 181

Query: 198 WGVVDKVL 205
           +G+VD+V+
Sbjct: 182 YGLVDRVI 189


>gi|323488686|ref|ZP_08093928.1| ATP-dependent Clp protease proteolytic subunit [Planococcus
           donghaensis MPA1U2]
 gi|323397704|gb|EGA90508.1| ATP-dependent Clp protease proteolytic subunit [Planococcus
           donghaensis MPA1U2]
          Length = 203

 Score =  236 bits (603), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 107/201 (53%), Positives = 153/201 (76%), Gaps = 1/201 (0%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT+RGER+YDIYSRLLK+R++ +   I+D++A  I AQLLFLEAE+P K+I
Sbjct: 1   MNLIPTVIEQTSRGERAYDIYSRLLKDRVIMLGSAIDDNVANSIVAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGG +TAGMAIYDTMQFI+P + T C+G AASMG+ LL+AG KG R ALPNA +
Sbjct: 61  SIYINSPGGSITAGMAIYDTMQFIRPDVQTICIGMAASMGAFLLAAGTKGKRLALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN+I  +  G+  + + K  DRD+ M+A  A
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILHLREKLNQILSERTGQPIDVIAKDTDRDNFMTAERA 180

Query: 196 CDWGVVDKVLMSRIDIEEKSK 216
            ++G++D+V+ +R  + E  K
Sbjct: 181 LEYGLIDQVI-TRSKLPENHK 200


>gi|315650622|ref|ZP_07903682.1| ATP-dependent Clp protease proteolytic subunit [Eubacterium
           saburreum DSM 3986]
 gi|315487119|gb|EFU77441.1| ATP-dependent Clp protease proteolytic subunit [Eubacterium
           saburreum DSM 3986]
          Length = 193

 Score =  236 bits (602), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 105/190 (55%), Positives = 148/190 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+E T+RGER++DIYSRLLK+RI+F+  ++ D  A+L+ AQ+LFLE+E+P K+I
Sbjct: 1   MSLVPTVIESTSRGERAFDIYSRLLKDRIIFLGEEVNDVTASLVVAQILFLESEDPTKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGG V AGMAIYDTMQ++K  +ST CMG AASM + LL+ G KG R+ALPNA I
Sbjct: 61  NLYINSPGGSVVAGMAIYDTMQYVKCDVSTICMGMAASMAAFLLAGGTKGKRYALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I   A+ I+K + ++N+I  +N  +  E +E+  +RD+ MSA EA
Sbjct: 121 MIHQPSGGAQGQATEIRIAAEQILKTREKMNKILAENTNQPIEVIERDTERDNYMSAKEA 180

Query: 196 CDWGVVDKVL 205
            D+G++DKV+
Sbjct: 181 LDYGIIDKVI 190


>gi|237751093|ref|ZP_04581573.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter bilis
           ATCC 43879]
 gi|229373538|gb|EEO23929.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter bilis
           ATCC 43879]
          Length = 196

 Score =  236 bits (602), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 106/190 (55%), Positives = 150/190 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P V+E+T RGERSYDIYSRLLK+RI+ ++G+I+D +++ I AQLLFLEAE+PQK++
Sbjct: 1   MNYIPYVIEKTGRGERSYDIYSRLLKDRIIMLSGEIDDSVSSSIVAQLLFLEAEDPQKDV 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VT+G +IYDTM +IKP I T C+GQAASMG+ LLS G KG R+ALP+ARI
Sbjct: 61  FLYINSPGGSVTSGFSIYDTMNYIKPDICTICVGQAASMGAFLLSCGTKGKRYALPHARI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DIE  A++I+++K  +N+I   N G++ +++ +  +RD  MSA EA
Sbjct: 121 MIHQPLGGARGQATDIEIQAKEILRLKTIINDILAANTGQSVKKITQDCERDFYMSADEA 180

Query: 196 CDWGVVDKVL 205
             +G++D V+
Sbjct: 181 QKYGLIDSVM 190


>gi|294499827|ref|YP_003563527.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           megaterium QM B1551]
 gi|294349764|gb|ADE70093.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           megaterium QM B1551]
          Length = 193

 Score =  236 bits (602), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 104/191 (54%), Positives = 150/191 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L P VVEQT++GER+YDIYSRLL +R++ +TG++ D +AT I AQLLFL+AENP+K+I
Sbjct: 1   MNLTPYVVEQTSKGERAYDIYSRLLLDRVIMLTGEVTDEVATSIIAQLLFLDAENPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGG +TAGMAI+DTMQ I+  +ST C+G AASMGS LL+ G+KG RFALPN+ +
Sbjct: 61  SIYINSPGGSITAGMAIFDTMQLIRADVSTLCIGLAASMGSFLLAGGQKGKRFALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+++K  LNE+  +  G++   ++K  DRD   +A EA
Sbjct: 121 MIHQPLGGAKGQAAEIEIRAKRILRLKDHLNELLSERTGQSLSTIKKDTDRDTFFTADEA 180

Query: 196 CDWGVVDKVLM 206
            ++G++D++L+
Sbjct: 181 KEYGMIDQILV 191


>gi|240849147|ref|NP_001155481.1| putative ATP-dependent Clp protease proteolytic subunit,
           mitochondrial [Acyrthosiphon pisum]
 gi|239792011|dbj|BAH72394.1| ACYPI002586 [Acyrthosiphon pisum]
          Length = 224

 Score =  236 bits (602), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 107/186 (57%), Positives = 149/186 (80%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P+VVEQT RGERSYDI+SRLLKERI+ V G+I DH+A+L+ AQLLFL+ EN +  I++Y
Sbjct: 33  IPIVVEQTGRGERSYDIFSRLLKERIICVMGEINDHVASLVIAQLLFLQFENQKATINMY 92

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+ IYDTM +IKP +ST+C+GQA SMGS+LL+AG KG R ALP++RI++H
Sbjct: 93  INSPGGSVTAGLGIYDTMMYIKPDVSTWCIGQACSMGSVLLAAGAKGKRHALPHSRIMIH 152

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  G+ASD++    +I+++K  L +IY K+ G   ++++ +++ DH MSA EA  +
Sbjct: 153 QPSGGMQGKASDMKIVTDEILRLKSSLIDIYGKHTGMPADKIDASMESDHFMSADEAVTF 212

Query: 199 GVVDKV 204
           G++DKV
Sbjct: 213 GLIDKV 218


>gi|308069047|ref|YP_003870652.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           [Paenibacillus polymyxa E681]
 gi|305858326|gb|ADM70114.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           [Paenibacillus polymyxa E681]
          Length = 194

 Score =  236 bits (602), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 112/189 (59%), Positives = 142/189 (75%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP VVEQT +GERSYDIYSRLLK+RIVFV   I+DH+A  I AQLLFL AE+P+KEI +Y
Sbjct: 5   VPYVVEQTAQGERSYDIYSRLLKDRIVFVGAAIDDHLANSIIAQLLFLAAEDPEKEIYMY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  +AG AIYDTMQ+IKP + T C G AAS G++LL AG KG R ALPN+ I++H
Sbjct: 65  INSPGGSTSAGFAIYDTMQYIKPDVHTICTGFAASFGAILLLAGAKGKRSALPNSEIMIH 124

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQASDI   A+ I+  + +   I  +  G+++E+VEK +DRD  MSA EA ++
Sbjct: 125 QPHGGAQGQASDIAISAKRILWTREKATRITAERTGQSFEKVEKDMDRDFYMSAQEALEY 184

Query: 199 GVVDKVLMS 207
           GV+D+V+ S
Sbjct: 185 GVIDQVITS 193


>gi|69249001|ref|ZP_00604844.1| Peptidase S14, ClpP [Enterococcus faecium DO]
 gi|227550370|ref|ZP_03980419.1| endopeptidase Clp [Enterococcus faecium TX1330]
 gi|257879589|ref|ZP_05659242.1| peptidase S14 [Enterococcus faecium 1,230,933]
 gi|257882608|ref|ZP_05662261.1| peptidase S14 [Enterococcus faecium 1,231,502]
 gi|257885031|ref|ZP_05664684.1| peptidase S14 [Enterococcus faecium 1,231,501]
 gi|257888403|ref|ZP_05668056.1| peptidase S14 [Enterococcus faecium 1,141,733]
 gi|257890257|ref|ZP_05669910.1| peptidase S14 [Enterococcus faecium 1,231,410]
 gi|257893441|ref|ZP_05673094.1| peptidase S14 [Enterococcus faecium 1,231,408]
 gi|257897223|ref|ZP_05676876.1| peptidase S14 [Enterococcus faecium Com12]
 gi|257899224|ref|ZP_05678877.1| peptidase S14 [Enterococcus faecium Com15]
 gi|258616800|ref|ZP_05714570.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecium DO]
 gi|260559746|ref|ZP_05831926.1| peptidase S14 [Enterococcus faecium C68]
 gi|261207321|ref|ZP_05922008.1| peptidase S14 [Enterococcus faecium TC 6]
 gi|289566520|ref|ZP_06446943.1| Clp protease [Enterococcus faecium D344SRF]
 gi|293377995|ref|ZP_06624173.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium PC4.1]
 gi|293557243|ref|ZP_06675791.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium E1039]
 gi|293559757|ref|ZP_06676278.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium E1162]
 gi|293567607|ref|ZP_06678951.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium E1071]
 gi|293570370|ref|ZP_06681427.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium E980]
 gi|294616541|ref|ZP_06696319.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium E1636]
 gi|294618382|ref|ZP_06697960.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium E1679]
 gi|294623239|ref|ZP_06702110.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium U0317]
 gi|314938917|ref|ZP_07846184.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium TX0133a04]
 gi|314943860|ref|ZP_07850593.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium TX0133C]
 gi|314948100|ref|ZP_07851501.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium TX0082]
 gi|314951634|ref|ZP_07854679.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium TX0133A]
 gi|314993860|ref|ZP_07859194.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium TX0133B]
 gi|314996702|ref|ZP_07861725.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium TX0133a01]
 gi|68194308|gb|EAN08823.1| Peptidase S14, ClpP [Enterococcus faecium DO]
 gi|227180509|gb|EEI61481.1| endopeptidase Clp [Enterococcus faecium TX1330]
 gi|257813817|gb|EEV42575.1| peptidase S14 [Enterococcus faecium 1,230,933]
 gi|257818266|gb|EEV45594.1| peptidase S14 [Enterococcus faecium 1,231,502]
 gi|257820883|gb|EEV48017.1| peptidase S14 [Enterococcus faecium 1,231,501]
 gi|257824457|gb|EEV51389.1| peptidase S14 [Enterococcus faecium 1,141,733]
 gi|257826617|gb|EEV53243.1| peptidase S14 [Enterococcus faecium 1,231,410]
 gi|257829820|gb|EEV56427.1| peptidase S14 [Enterococcus faecium 1,231,408]
 gi|257833788|gb|EEV60209.1| peptidase S14 [Enterococcus faecium Com12]
 gi|257837136|gb|EEV62210.1| peptidase S14 [Enterococcus faecium Com15]
 gi|260074414|gb|EEW62736.1| peptidase S14 [Enterococcus faecium C68]
 gi|260078381|gb|EEW66085.1| peptidase S14 [Enterococcus faecium TC 6]
 gi|289161674|gb|EFD09551.1| Clp protease [Enterococcus faecium D344SRF]
 gi|291589708|gb|EFF21512.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium E1071]
 gi|291590588|gb|EFF22319.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium E1636]
 gi|291595359|gb|EFF26674.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium E1679]
 gi|291597346|gb|EFF28526.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium U0317]
 gi|291600607|gb|EFF30911.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium E1039]
 gi|291606305|gb|EFF35718.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium E1162]
 gi|291609548|gb|EFF38813.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium E980]
 gi|292643360|gb|EFF61492.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium PC4.1]
 gi|313589140|gb|EFR67985.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium TX0133a01]
 gi|313591670|gb|EFR70515.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium TX0133B]
 gi|313596230|gb|EFR75075.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium TX0133A]
 gi|313597478|gb|EFR76323.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium TX0133C]
 gi|313641791|gb|EFS06371.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium TX0133a04]
 gi|313645436|gb|EFS10016.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium TX0082]
          Length = 197

 Score =  236 bits (602), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 107/190 (56%), Positives = 147/190 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQ++RGER+YDIYSRLLK+RI+ ++GQ+ D +A  I AQLLFL+A++ +K+I
Sbjct: 1   MNLIPTVIEQSSRGERAYDIYSRLLKDRIIMLSGQVTDDLANSIIAQLLFLDAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMAIYDTM F+K  + T  MG AASMGS LL+AG KG RFALPNA I
Sbjct: 61  YLYINSPGGSVTAGMAIYDTMNFVKADVQTIVMGMAASMGSFLLTAGTKGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I++ + RLN+I  +  G+  E +EK  DRD+ M+A +A
Sbjct: 121 MIHQPLGGAQGQATEIEIAARHILQTRERLNKILAERTGQPLEVIEKDTDRDNYMTAEQA 180

Query: 196 CDWGVVDKVL 205
             +G++D+V+
Sbjct: 181 KAYGLIDEVM 190


>gi|154497945|ref|ZP_02036323.1| hypothetical protein BACCAP_01925 [Bacteroides capillosus ATCC
           29799]
 gi|150272935|gb|EDN00092.1| hypothetical protein BACCAP_01925 [Bacteroides capillosus ATCC
           29799]
          Length = 193

 Score =  236 bits (601), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 109/193 (56%), Positives = 144/193 (74%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP VVEQTNRGERSYDI+SRLL +RI+F+  ++    A+L+ AQ+L+LEA++P K+I
Sbjct: 1   MSLVPYVVEQTNRGERSYDIFSRLLNDRIIFLGEEVNATTASLVVAQMLYLEAQDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG VT GMAIYDTMQ+IK  +ST C+G AASMG+ LLS+G KG R ALPNA I
Sbjct: 61  QFYINSPGGSVTDGMAIYDTMQYIKCDVSTICIGMAASMGAFLLSSGTKGKRLALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPS G  GQ +D+  H + +  IK+R+N+I   N GK  E V    +RD+ MSA EA
Sbjct: 121 MIHQPSAGTQGQITDMAIHLKRLEVIKKRMNKILADNTGKPVEVVTADCERDNFMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
           C++G++DKV+  R
Sbjct: 181 CEYGLIDKVIYQR 193


>gi|259502747|ref|ZP_05745649.1| ATP-dependent Clp protease [Lactobacillus antri DSM 16041]
 gi|312870316|ref|ZP_07730444.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus oris PB013-T2-3]
 gi|259169392|gb|EEW53887.1| ATP-dependent Clp protease [Lactobacillus antri DSM 16041]
 gi|311094200|gb|EFQ52516.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus oris PB013-T2-3]
          Length = 197

 Score =  236 bits (601), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 105/190 (55%), Positives = 148/190 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQ++RGER+YDIYSRLLK+RI+ ++G IED MA  I AQLLFL+A++  K+I
Sbjct: 1   MNLVPTVIEQSSRGERAYDIYSRLLKDRIIMLSGPIEDEMANSIVAQLLFLDAQDSTKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVT+GMAIYDTM FIK  + T  +G AASM S+L+S+G KG RF LP++++
Sbjct: 61  YLYINSPGGVVTSGMAIYDTMNFIKSDVQTIVIGMAASMASVLVSSGTKGKRFGLPHSQV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQPSGG  GQ ++IE  A +I+K ++ +NEI  KN G+  E++ +  +RDH ++A EA
Sbjct: 121 LIHQPSGGAQGQQTEIEIAATEILKTRKMINEILAKNSGQPIEKINRDTERDHYLTAQEA 180

Query: 196 CDWGVVDKVL 205
            D+G++D ++
Sbjct: 181 VDYGLLDGIM 190


>gi|196230686|ref|ZP_03129547.1| Endopeptidase Clp [Chthoniobacter flavus Ellin428]
 gi|196225027|gb|EDY19536.1| Endopeptidase Clp [Chthoniobacter flavus Ellin428]
          Length = 228

 Score =  236 bits (601), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 114/193 (59%), Positives = 151/193 (78%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP VVEQT RGERSYDIYSRLLK+RI+F+   I+D +A  I AQLLFL+ E+ +K+I++Y
Sbjct: 18  VPYVVEQTGRGERSYDIYSRLLKDRIIFLGTAIDDGVANSIIAQLLFLQMEDGKKDINIY 77

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDTMQF+   ++T+C+G AASMG++LL+AG KG R+ALPN+ I++H
Sbjct: 78  INSPGGSVTAGLAIYDTMQFLTCDVNTYCIGMAASMGAVLLAAGTKGKRYALPNSDIMIH 137

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           Q SGG  G ASD+ER  + + K+K+RL  I  K+ GKT E+V+   DRD+ MSA EA  +
Sbjct: 138 QVSGGAQGTASDVERTVEFMFKLKKRLIHILAKHTGKTDEQVKTDSDRDYYMSADEAKAY 197

Query: 199 GVVDKVLMSRIDI 211
           G+VD+V+ SR DI
Sbjct: 198 GLVDEVVKSRKDI 210


>gi|328767510|gb|EGF77559.1| hypothetical protein BATDEDRAFT_91564 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 251

 Score =  236 bits (601), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 113/199 (56%), Positives = 149/199 (74%), Gaps = 11/199 (5%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+E + RGER +DI+SRLLKERIV + G+++D ++ +I AQLLFLEAENP+K IS Y
Sbjct: 21  IPYVIESSARGERVFDIFSRLLKERIVMLNGEVDDSVSAIIVAQLLFLEAENPEKPISFY 80

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAGMAIYDT  +I+ P++T CMGQA SMGSLLL+AGE G R  LPNAR+++H
Sbjct: 81  INSPGGSVTAGMAIYDT--YIQSPVATVCMGQACSMGSLLLTAGEPGHRSILPNARVMIH 138

Query: 139 QPS---------GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           QP          GG SGQASDI  HA++I+ I+ RLN+IYV +  ++ + +   ++RDH 
Sbjct: 139 QPRQAIIVYTTFGGASGQASDIAIHAKEILDIRERLNQIYVHHTHQSLDVIVNRMERDHF 198

Query: 190 MSASEACDWGVVDKVLMSR 208
           MSA +A  +G+VDKVL  R
Sbjct: 199 MSAEQALTFGLVDKVLEKR 217


>gi|217077313|ref|YP_002335031.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermosipho
           africanus TCF52B]
 gi|217037168|gb|ACJ75690.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermosipho
           africanus TCF52B]
          Length = 201

 Score =  236 bits (601), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 107/187 (57%), Positives = 146/187 (78%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VPMVVE   + ER+YDIYSRLLK+RIVF+   I+DH+A L+ AQLLFLEAE+P K+I LY
Sbjct: 9   VPMVVESNGKYERAYDIYSRLLKDRIVFLGSAIDDHVANLVVAQLLFLEAEDPDKDIQLY 68

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG V+AG+AIYDTMQ+IK  ++T C+GQAASMG++LL+ G KG RF+LPN+RI++H
Sbjct: 69  INSPGGSVSAGLAIYDTMQYIKCDVATICIGQAASMGAVLLAGGTKGKRFSLPNSRIMIH 128

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  G A D+E   +++++IK ++NEI   + G+  E +EK  DRD  M+  EA ++
Sbjct: 129 QPLGGAEGPAKDVEIMTKELLRIKNKINEILSFHTGQPIERIEKDTDRDFFMTPEEALEY 188

Query: 199 GVVDKVL 205
           G++DKV+
Sbjct: 189 GLIDKVI 195


>gi|218295537|ref|ZP_03496350.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermus
           aquaticus Y51MC23]
 gi|218244169|gb|EED10695.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermus
           aquaticus Y51MC23]
          Length = 194

 Score =  236 bits (601), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 106/188 (56%), Positives = 148/188 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+EQT RGER YDIYSRLLK+RI+F+   I+  +A  I AQLLFL+A+NP +EI L
Sbjct: 2   VIPYVIEQTARGERVYDIYSRLLKDRIIFLGTPIDAQVANTIVAQLLFLDAQNPNQEIRL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+AIYDTMQF++ P+ST  +G AASM +++L+AGEKG R+ALP++++++
Sbjct: 62  YINSPGGEVDAGLAIYDTMQFVRAPVSTIVIGMAASMAAVILAAGEKGRRYALPHSKVMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  G ASDI   AQ+I+K K+ LNEI  K+ G+  E+VE+  DRD+ +SA EA +
Sbjct: 122 HQPWGGARGTASDIAIQAQEILKAKKLLNEILAKHTGQPLEKVERDTDRDYYLSAQEALE 181

Query: 198 WGVVDKVL 205
           +G++D+V+
Sbjct: 182 YGLIDQVV 189


>gi|227510637|ref|ZP_03940686.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
 gi|227513652|ref|ZP_03943701.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           buchneri ATCC 11577]
 gi|227524797|ref|ZP_03954846.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           hilgardii ATCC 8290]
 gi|227083168|gb|EEI18480.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           buchneri ATCC 11577]
 gi|227088053|gb|EEI23365.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           hilgardii ATCC 8290]
 gi|227190289|gb|EEI70356.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
          Length = 214

 Score =  236 bits (601), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 106/198 (53%), Positives = 151/198 (76%)

Query: 8   KKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           K D E   + LVP V+EQ+  GER+YDIYSRLLK+RI+ ++G IED MA  I AQLLFL+
Sbjct: 10  KIDKEAYSMNLVPTVIEQSANGERAYDIYSRLLKDRIIMLSGPIEDDMANAIIAQLLFLD 69

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           A++ +K+I LYINSPGGV+T+GMAI+DTM F+K  + T  MG AASM S+L S+G KG R
Sbjct: 70  AQDSEKDIYLYINSPGGVITSGMAIFDTMNFVKADVQTIVMGMAASMASVLASSGAKGKR 129

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           FALP+A++L+HQPSGG  GQ ++IE  A++I+K ++ +NE+  KN G+  E++ K  +RD
Sbjct: 130 FALPHAQVLIHQPSGGAQGQQTEIEIAAEEILKARKMINELLAKNSGQPIEKINKDTERD 189

Query: 188 HIMSASEACDWGVVDKVL 205
           + ++A EA D+G++D ++
Sbjct: 190 NYLTAQEAVDYGLLDGIM 207


>gi|222150769|ref|YP_002559922.1| ATP-dependent protease proteolytic subunit ClpP [Macrococcus
           caseolyticus JCSC5402]
 gi|254763793|sp|B9EAG5|CLPP_MACCJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|222119891|dbj|BAH17226.1| ATP-dependent protease proteolytic subunit ClpP [Macrococcus
           caseolyticus JCSC5402]
          Length = 194

 Score =  235 bits (600), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 107/190 (56%), Positives = 147/190 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+E TNRGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL+A++ +K+I
Sbjct: 1   MNLIPTVIESTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLQAQDAEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMAIYDTMQ IKP + T C+G AASMGS LL+AG KG RFALPNA +
Sbjct: 61  YLYINSPGGSVTAGMAIYDTMQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K + +LN I  +  G+  E++EK  DRD+ ++A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAARHILKTREKLNRILAERTGQPIEKIEKDTDRDNFLTADEA 180

Query: 196 CDWGVVDKVL 205
             +G++D+V+
Sbjct: 181 KAYGLIDEVM 190


>gi|42525082|ref|NP_970462.1| ATP-dependent Clp protease proteolytic subunit [Bdellovibrio
           bacteriovorus HD100]
 gi|60389658|sp|Q6MH11|CLPP_BDEBA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|39577293|emb|CAE81116.1| ATP-dependent Clp protease proteolytic subunit [Bdellovibrio
           bacteriovorus HD100]
          Length = 212

 Score =  235 bits (600), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 107/200 (53%), Positives = 151/200 (75%), Gaps = 3/200 (1%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           ++  + L+P V+EQT++GERSYDIYSRLLK+RI+ +   + D +A  I AQ+LFLE +NP
Sbjct: 8   QETAVALIPYVIEQTSKGERSYDIYSRLLKDRIIILGTAVTDEVANSIIAQMLFLEVDNP 67

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K I LYINSPGG V+AG+AIYD MQF+K  ++T+CMG AASMGSLLL+AG KGMR++LP
Sbjct: 68  EKPIHLYINSPGGSVSAGLAIYDFMQFVKCDVATYCMGMAASMGSLLLTAGTKGMRYSLP 127

Query: 132 NARILLHQP---SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           N RI++HQP    GG SGQ +DIE HA+++VK K +L  IY  + G+ Y+ +   ++RD+
Sbjct: 128 NTRIMIHQPLLSGGGLSGQVTDIEIHAKELVKTKEKLTRIYETHTGRDYDTLRAAMERDN 187

Query: 189 IMSASEACDWGVVDKVLMSR 208
            M   +A ++G++D V+ SR
Sbjct: 188 FMDPYQAKEFGLLDHVVESR 207


>gi|218133242|ref|ZP_03462046.1| hypothetical protein BACPEC_01107 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992115|gb|EEC58119.1| hypothetical protein BACPEC_01107 [Bacteroides pectinophilus ATCC
           43243]
          Length = 193

 Score =  235 bits (600), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 110/193 (56%), Positives = 145/193 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLLK+RI+F+  ++ D  A+LI AQLLFLE+E+P K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLKDRIIFLGEEVTDVSASLIVAQLLFLESEDPGKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           + YINSPGG VTAGMAIYDTM ++K  +ST C+G AASMG+ LLS G KG R ALPNA I
Sbjct: 61  NFYINSPGGSVTAGMAIYDTMNYVKCDVSTICIGMAASMGAFLLSGGTKGKRLALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+DI+  +  I+K + +LN I   N GK  + +    +RD+ MSA EA
Sbjct: 121 MIHQPSGGAQGQATDIKIVSDHIIKTRHKLNTILAANTGKPLDVIAVDTERDNYMSAQEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++D V+  R
Sbjct: 181 VEYGLIDSVIEKR 193


>gi|227529566|ref|ZP_03959615.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           vaginalis ATCC 49540]
 gi|227350525|gb|EEJ40816.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           vaginalis ATCC 49540]
          Length = 197

 Score =  235 bits (600), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 105/190 (55%), Positives = 148/190 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQ++RGER+YDIYSRLLK+RI+ ++G IED MA  I AQLLFL+A++  K+I
Sbjct: 1   MNLVPTVIEQSSRGERAYDIYSRLLKDRIIMLSGPIEDDMANSIVAQLLFLDAQDSTKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVT+GMAIYDTM FIK  + T  +G AASM S+L+S+G KG RF LP++++
Sbjct: 61  YLYINSPGGVVTSGMAIYDTMNFIKSDVQTIVIGMAASMASVLVSSGAKGKRFGLPHSQV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQPSGG  GQ ++IE  A +I+K ++ +NEI  KN G+  E++ +  +RDH ++A EA
Sbjct: 121 LIHQPSGGAQGQQTEIEIAATEILKTRKMINEILAKNSGQPIEKINRDTERDHYLTAQEA 180

Query: 196 CDWGVVDKVL 205
            D+G++D ++
Sbjct: 181 VDYGLLDGIM 190


>gi|238917377|ref|YP_002930894.1| ATP-dependent Clp protease, protease subunit [Eubacterium eligens
           ATCC 27750]
 gi|259585953|sp|C4Z1T6|CLPP_EUBE2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|238872737|gb|ACR72447.1| ATP-dependent Clp protease, protease subunit [Eubacterium eligens
           ATCC 27750]
          Length = 193

 Score =  235 bits (600), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 108/193 (55%), Positives = 144/193 (74%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP V+EQ +RGERSYDIYSRLLK+RI+F+  ++ D  A L+ AQ+LFLEAE+P K+I
Sbjct: 1   MSFVPYVIEQNSRGERSYDIYSRLLKDRIIFLGEEVTDVSANLVVAQMLFLEAEDPSKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG V+AG AIYDTMQ+IK  +ST C+G AASMG+ LLS G KG R ALPNA I
Sbjct: 61  HFYINSPGGSVSAGFAIYDTMQYIKCDVSTICIGMAASMGAFLLSGGAKGKRLALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQ ++I   A++I+K + +LNEI   N GK+ EE+ +  +RD+ M+A EA
Sbjct: 121 MIHQPSGGARGQETEIRIVAENILKTRNKLNEILAANTGKSVEEISRDTERDNYMTAQEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D V+  R
Sbjct: 181 VAYGLIDSVVEKR 193


>gi|295696500|ref|YP_003589738.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           tusciae DSM 2912]
 gi|295412102|gb|ADG06594.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           tusciae DSM 2912]
          Length = 192

 Score =  235 bits (600), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 107/188 (56%), Positives = 145/188 (77%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            VP+VVEQT+RGERSYDIYSRLLK+RI+F+   I+D +A  + AQLLFL AE+P+K++SL
Sbjct: 3   FVPIVVEQTSRGERSYDIYSRLLKDRIIFLGTPIDDQVANSVIAQLLFLAAEDPEKDVSL 62

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGMAI DTMQ+I+P ++T C+G AASM ++LL+AG KG R ALPN+ I++
Sbjct: 63  YINSPGGSVTAGMAILDTMQYIRPDVATICVGMAASMAAVLLAAGAKGKRRALPNSEIMI 122

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA DI+ HA  I++++ +LN I  +  G+    +E+  DRD  MSA EA +
Sbjct: 123 HQPLGGVQGQAVDIKIHADRILRVREKLNRILSERTGQPLSRIEEDTDRDRFMSADEAKE 182

Query: 198 WGVVDKVL 205
           +G++D V+
Sbjct: 183 YGLIDDVI 190


>gi|320120411|gb|EFE27574.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Filifactor
           alocis ATCC 35896]
 gi|320120478|gb|ADW16163.1| hypothetical protein HMPREF0389_01718 [Filifactor alocis ATCC
           35896]
          Length = 196

 Score =  235 bits (600), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 105/190 (55%), Positives = 149/190 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP+VVEQ+ RGERSYDIYSRLLK+RI+F++ ++ D  ++L+ AQ+LFLEAE+P K+I
Sbjct: 3   MAYVPVVVEQSGRGERSYDIYSRLLKDRIIFLSDEVNDVTSSLVVAQMLFLEAEDPDKDI 62

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG +T+GMAI+DTMQ+IK  + T C+G AASMG+ LL+AGEKG R+ALPNA +
Sbjct: 63  MFYINSPGGSITSGMAIFDTMQYIKCDVCTICIGMAASMGAFLLAAGEKGKRYALPNAEV 122

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+  A+ I+K+K +LN I  +  G+  E ++   +RD+ MSA EA
Sbjct: 123 MIHQPLGGAQGQATDIQIQAERILKMKDKLNIILAERTGQNLETIKNDTERDNFMSAEEA 182

Query: 196 CDWGVVDKVL 205
            ++G++DKV+
Sbjct: 183 KEYGLIDKVI 192


>gi|261408153|ref|YP_003244394.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
           sp. Y412MC10]
 gi|261284616|gb|ACX66587.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
           sp. Y412MC10]
          Length = 198

 Score =  235 bits (600), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 111/194 (57%), Positives = 145/194 (74%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           ED  + +VP VVEQTNRGERSYDIYSRLLK+RIVFV   I+D +A  I AQLLFL AE+P
Sbjct: 2   EDETMNIVPYVVEQTNRGERSYDIYSRLLKDRIVFVGAAIDDAIANSIIAQLLFLAAEDP 61

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+I +YINSPGG V+AG  IYDTMQ IKP ++T C G AAS G++LL AG KG R ALP
Sbjct: 62  EKDIHMYINSPGGSVSAGFGIYDTMQIIKPQVNTICTGFAASYGAILLLAGAKGKRLALP 121

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+ I++HQP GG  GQA+DI   A+ I+K + +L  I  +  G++ E VEK ++RD+ MS
Sbjct: 122 NSEIMIHQPLGGVQGQATDIAITAKRILKTREKLAHIISERTGQSVERVEKDMERDYFMS 181

Query: 192 ASEACDWGVVDKVL 205
           A EA ++G++D ++
Sbjct: 182 AEEAKEYGIIDDIV 195


>gi|291460376|ref|ZP_06599766.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Oribacterium
           sp. oral taxon 078 str. F0262]
 gi|291416943|gb|EFE90662.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Oribacterium
           sp. oral taxon 078 str. F0262]
          Length = 209

 Score =  235 bits (599), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 106/200 (53%), Positives = 153/200 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P V++ T+RGERSYDI+SRLL ERIVF+  ++ +  A+L+ AQLL+LE+E+P K++
Sbjct: 10  IATIPYVIQSTSRGERSYDIFSRLLNERIVFLGDEVNNDTASLVVAQLLYLESEDPDKDV 69

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGGV+TAGMAIYDTMQ+IK  +ST C+G AASMG+ LL+ G KG R  LPNA +
Sbjct: 70  SLYINSPGGVITAGMAIYDTMQYIKCDVSTICVGMAASMGAFLLAGGTKGKRMILPNAEV 129

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I+  A+ I++ K+ + EI  +NCG++ E+V +  +RDH M A +A
Sbjct: 130 MIHQPSGGAQGQATEIQITAEWILRTKKHMAEILAENCGQSLEKVLEDTERDHWMDAEQA 189

Query: 196 CDWGVVDKVLMSRIDIEEKS 215
             +G+VD++  SR + E K+
Sbjct: 190 LSYGLVDRIFRSRGESEGKA 209


>gi|226310010|ref|YP_002769904.1| ATP-dependent Clp protease proteolytic subunit [Brevibacillus
           brevis NBRC 100599]
 gi|226092958|dbj|BAH41400.1| ATP-dependent Clp protease proteolytic subunit [Brevibacillus
           brevis NBRC 100599]
          Length = 193

 Score =  235 bits (599), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 109/190 (57%), Positives = 146/190 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P+VVEQT+ GERSYDIYSRLLK+RI+F+   I+D +A  + AQLLFL AE+P+K+I
Sbjct: 1   MNLIPVVVEQTSYGERSYDIYSRLLKDRIIFLGSAIDDQVANAVVAQLLFLAAEDPKKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMAI DTM+F+ P +ST C G AASMG++LL AG  G R+ALPNA +
Sbjct: 61  HLYINSPGGSVTAGMAIIDTMKFVAPDVSTICTGMAASMGAMLLVAGAPGKRYALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +LHQP GG  GQASDI+  A  I++ +  L  I  +  GKT E++EK  DRD+ ++A+EA
Sbjct: 121 MLHQPWGGSQGQASDIKIAADRIMRHRHMLYTIISERTGKTVEQIEKDADRDYFLTAAEA 180

Query: 196 CDWGVVDKVL 205
            ++G++DKV+
Sbjct: 181 LEYGLIDKVI 190


>gi|326790230|ref|YP_004308051.1| ATP-dependent Clp protease proteolytic subunit ClpP [Clostridium
           lentocellum DSM 5427]
 gi|326540994|gb|ADZ82853.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           lentocellum DSM 5427]
          Length = 193

 Score =  235 bits (599), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 108/193 (55%), Positives = 145/193 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMV+EQTNRGERSYDIYSRLLK+RI+ +  ++ +  A LI AQLLFLEAE+P K+I
Sbjct: 1   MSLVPMVIEQTNRGERSYDIYSRLLKDRIIILGDEVNNVTANLIVAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG +T GMAIYDTMQ+IK  +ST CMG AASMG+ LL+ G KG RFALPNA +
Sbjct: 61  MFYINSPGGSITDGMAIYDTMQYIKCDVSTICMGMAASMGAFLLAGGTKGKRFALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+  AQ I+K K R+N +  +  G+  E +   ++RD+  +A EA
Sbjct: 121 MIHQPLGGAKGQATDIQITAQHIIKTKERMNRMLSEFTGQPIERINNDVERDNWKTAEEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++D ++ S+
Sbjct: 181 KEYGLIDDIITSK 193


>gi|87306486|ref|ZP_01088633.1| ATP-dependent clp protease proteolytic subunit [Blastopirellula
           marina DSM 3645]
 gi|87290665|gb|EAQ82552.1| ATP-dependent clp protease proteolytic subunit [Blastopirellula
           marina DSM 3645]
          Length = 196

 Score =  235 bits (599), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 106/188 (56%), Positives = 143/188 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P VVE++ R ER YDIYSRLLK+RI+F+  Q+ D MA  I AQ+LFL++E+P  +I L
Sbjct: 3   LIPYVVEKSGREERVYDIYSRLLKDRIIFLGTQVNDEMANCIVAQMLFLQSEDPAADIHL 62

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG V+AGMAIYDTMQFI   ++T+C+GQAASMG++LL+AG  G R ALPNAR+++
Sbjct: 63  YVNSPGGSVSAGMAIYDTMQFITCDVATYCIGQAASMGAVLLTAGAAGKRHALPNARVMI 122

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP  G  G A +I  HA +  +IK RLNEI +K+ G T + +EK  DRD  MSA E+C+
Sbjct: 123 HQPLAGMQGTAEEILIHATEFKRIKHRLNEILIKHTGHTIDRIEKDTDRDRFMSAEESCE 182

Query: 198 WGVVDKVL 205
           +G++D V+
Sbjct: 183 YGLIDHVI 190


>gi|283779543|ref|YP_003370298.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pirellula
           staleyi DSM 6068]
 gi|283437996|gb|ADB16438.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pirellula
           staleyi DSM 6068]
          Length = 205

 Score =  235 bits (599), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 105/190 (55%), Positives = 148/190 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P VVE++ R ER YDIYSRLLK+RI+F+  Q+ D MA  I AQ+LFL++++P+ +I
Sbjct: 1   MPLIPYVVEKSGREERVYDIYSRLLKDRIIFLGTQVNDEMANAIVAQMLFLQSDDPKADI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG ++AGMAIYDTMQF+   ++T+C+GQAASMG++LL+AG  G RFALPNARI
Sbjct: 61  HLYINSPGGSISAGMAIYDTMQFVTCDVATYCIGQAASMGAVLLTAGAPGKRFALPNARI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP  G  G A +I  HA++  +IK+R+NEI +K+ G+  E++E   DRD  MSA+EA
Sbjct: 121 MIHQPLAGMQGTAEEIMIHAKEFRRIKQRMNEIMLKHTGQPMEKIESDTDRDRFMSAAEA 180

Query: 196 CDWGVVDKVL 205
            ++ +VDKV+
Sbjct: 181 AEYRIVDKVI 190


>gi|255994401|ref|ZP_05427536.1| Clp protease [Eubacterium saphenum ATCC 49989]
 gi|255993114|gb|EEU03203.1| Clp protease [Eubacterium saphenum ATCC 49989]
          Length = 196

 Score =  235 bits (599), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 109/193 (56%), Positives = 147/193 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L P+V+E+   GERS+DIYSRLL++RI+F+   IE +MA+ I AQLLFLEAE+  K+I
Sbjct: 1   MALTPIVIEKDGSGERSFDIYSRLLRDRIIFIGEPIESNMASSIIAQLLFLEAEDSSKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG VT+G+AIYDTMQFIKP + T C+G AASM ++LL AGEKG RFALPN+ I
Sbjct: 61  CIYINSPGGDVTSGLAIYDTMQFIKPQVQTVCVGMAASMAAVLLLAGEKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG SGQAS+I+  A+ I+K + +LN +  K+  K    +E+  DRD  M+A+EA
Sbjct: 121 MIHQPMGGASGQASEIKIAAEHIIKTRDKLNRLISKHTTKNLSTIEEDTDRDKYMTANEA 180

Query: 196 CDWGVVDKVLMSR 208
            D+G++D VL SR
Sbjct: 181 LDYGIIDSVLKSR 193


>gi|15615680|ref|NP_243984.1| ATP-dependent Clp protease proteolytic subunit [Bacillus halodurans
           C-125]
 gi|18203165|sp|Q9K888|CLPP2_BACHD RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|10175740|dbj|BAB06837.1| ATP-dependent Clp protease proteolytic subunit [Bacillus halodurans
           C-125]
          Length = 194

 Score =  235 bits (599), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 110/191 (57%), Positives = 143/191 (74%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G VP V+EQ+   ERSYDIYSRLLK+RIVF+   I+D +A  I AQLLFLEAENP+K+I 
Sbjct: 3   GYVPYVIEQSGLSERSYDIYSRLLKDRIVFLGAAIDDQIANSIVAQLLFLEAENPKKDIY 62

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG  +AG AIYDTMQF+KP I T C G AAS  ++LL AG KG RFALPN+ I+
Sbjct: 63  LYINSPGGSTSAGFAIYDTMQFVKPSIHTICTGMAASFAAILLLAGTKGKRFALPNSEIM 122

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  GQASD+   A+ I+ I+ +L  +  +  G++ E+V K +DRD+ MSA EA 
Sbjct: 123 IHQPSGGAQGQASDLAITAKRILGIREKLVTVTSERTGQSPEKVAKDMDRDYFMSAEEAL 182

Query: 197 DWGVVDKVLMS 207
           ++G+VD+++ S
Sbjct: 183 EYGIVDQIITS 193


>gi|257126078|ref|YP_003164192.1| ATP-dependent Clp protease proteolytic subunit ClpP [Leptotrichia
           buccalis C-1013-b]
 gi|257050017|gb|ACV39201.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Leptotrichia
           buccalis C-1013-b]
          Length = 203

 Score =  234 bits (598), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 106/186 (56%), Positives = 149/186 (80%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P+V+E   RGERSYDIYSRLLK+RI+FV+G++ED MA  I AQLLFL+A++ +K+I +YI
Sbjct: 18  PVVIENDGRGERSYDIYSRLLKDRIIFVSGEVEDGMANAIVAQLLFLDAQDNEKDIVMYI 77

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGGV+TAG+AIYDTM+ IK  +ST C+GQAASMG++LLSAG KG R++LPN+RI++HQ
Sbjct: 78  NSPGGVITAGLAIYDTMRHIKSDVSTVCVGQAASMGAVLLSAGAKGKRYSLPNSRIMIHQ 137

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQA+DI+  A++I ++K   ++I  +  GK+ EE+    +RD+ MS  EA ++G
Sbjct: 138 PLGGARGQATDIQIQAKEIERMKEITSKILSEATGKSVEEIYADTERDNFMSPEEAVNYG 197

Query: 200 VVDKVL 205
           ++DK+L
Sbjct: 198 LIDKIL 203


>gi|15923758|ref|NP_371292.1| ATP-dependent Clp protease proteolytic subunit-like protein
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926445|ref|NP_373978.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus N315]
 gi|21282459|ref|NP_645547.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus MW2]
 gi|49483025|ref|YP_040249.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|49485640|ref|YP_042861.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|57650109|ref|YP_185707.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus COL]
 gi|82750474|ref|YP_416215.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus RF122]
 gi|87161484|ref|YP_493453.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|88194551|ref|YP_499347.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|148267228|ref|YP_001246171.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus JH9]
 gi|150393277|ref|YP_001315952.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus JH1]
 gi|151220948|ref|YP_001331770.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156979096|ref|YP_001441355.1| ATP-dependent Clp protease proteolytic subunit homologue
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|161509038|ref|YP_001574697.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|221141842|ref|ZP_03566335.1| endopeptidase ClpP [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253317258|ref|ZP_04840471.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus str. CF-Marseille]
 gi|253731397|ref|ZP_04865562.1| ATP-dependent Clp protease proteolytic subunit family protein
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253732783|ref|ZP_04866948.1| ATP-dependent Clp protease proteolytic subunit family protein
           [Staphylococcus aureus subsp. aureus TCH130]
 gi|255005559|ref|ZP_05144160.2| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257424888|ref|ZP_05601315.1| clp protease [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257427556|ref|ZP_05603955.1| clp protease [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430187|ref|ZP_05606571.1| endopeptidase ClpP [Staphylococcus aureus subsp. aureus 68-397]
 gi|257432888|ref|ZP_05609248.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257435792|ref|ZP_05611840.1| clp protease [Staphylococcus aureus subsp. aureus M876]
 gi|257794910|ref|ZP_05643889.1| clp protease [Staphylococcus aureus A9781]
 gi|258418226|ref|ZP_05682491.1| ATP-dependent Clp protease proteolytic subunit ClpP [Staphylococcus
           aureus A9763]
 gi|258421524|ref|ZP_05684449.1| clp protease [Staphylococcus aureus A9719]
 gi|258423417|ref|ZP_05686308.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus A9635]
 gi|258439133|ref|ZP_05690177.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus A9299]
 gi|258440939|ref|ZP_05690774.1| ATP-dependent Clp protease proteolytic subunit ClpP [Staphylococcus
           aureus A8115]
 gi|258445769|ref|ZP_05693946.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus A6300]
 gi|258449581|ref|ZP_05697683.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus A6224]
 gi|258452184|ref|ZP_05700200.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus A5948]
 gi|258453981|ref|ZP_05701953.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus A5937]
 gi|262049552|ref|ZP_06022422.1| hypothetical protein SAD30_0974 [Staphylococcus aureus D30]
 gi|262052698|ref|ZP_06024889.1| hypothetical protein SA930_1868 [Staphylococcus aureus 930918-3]
 gi|269202390|ref|YP_003281659.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus ED98]
 gi|282895064|ref|ZP_06303285.1| Clp protease [Staphylococcus aureus A8117]
 gi|282903398|ref|ZP_06311289.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus C160]
 gi|282905178|ref|ZP_06313035.1| endopeptidase ClpP [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282908157|ref|ZP_06315988.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282910415|ref|ZP_06318219.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282913610|ref|ZP_06321399.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus M899]
 gi|282916110|ref|ZP_06323873.1| Clp protease [Staphylococcus aureus subsp. aureus D139]
 gi|282918561|ref|ZP_06326298.1| Clp protease [Staphylococcus aureus subsp. aureus C427]
 gi|282922066|ref|ZP_06329763.1| Clp protease [Staphylococcus aureus A9765]
 gi|282923527|ref|ZP_06331207.1| Clp protease [Staphylococcus aureus subsp. aureus C101]
 gi|282926635|ref|ZP_06334265.1| Clp protease [Staphylococcus aureus A10102]
 gi|283769931|ref|ZP_06342823.1| ATP-dependent Clp protease subunit [Staphylococcus aureus subsp.
           aureus H19]
 gi|283957600|ref|ZP_06375053.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|284023791|ref|ZP_06378189.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus 132]
 gi|293500653|ref|ZP_06666504.1| Clp protease [Staphylococcus aureus subsp. aureus 58-424]
 gi|293509601|ref|ZP_06668312.1| Clp protease [Staphylococcus aureus subsp. aureus M809]
 gi|293524187|ref|ZP_06670874.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus M1015]
 gi|294850496|ref|ZP_06791225.1| Clp protease [Staphylococcus aureus A9754]
 gi|295406492|ref|ZP_06816298.1| Clp protease [Staphylococcus aureus A8819]
 gi|295427347|ref|ZP_06819982.1| Clp protease [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296276994|ref|ZP_06859501.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus MR1]
 gi|297208504|ref|ZP_06924933.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|297245218|ref|ZP_06929092.1| Clp protease [Staphylococcus aureus A8796]
 gi|297590298|ref|ZP_06948937.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus MN8]
 gi|300912596|ref|ZP_07130039.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|304381609|ref|ZP_07364259.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|54036854|sp|P63786|CLPP_STAAW RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|54036862|sp|P99089|CLPP_STAAN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|54040892|sp|P63785|CLPP_STAAM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|56748671|sp|Q6GB62|CLPP_STAAS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|56748685|sp|Q6GIM3|CLPP_STAAR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|67460165|sp|Q5HHQ0|CLPP_STAAC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|90183185|sp|Q2YSF8|CLPP_STAAB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|116243169|sp|Q2G036|CLPP_STAA8 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|124013828|sp|Q2FIM5|CLPP_STAA3 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166214713|sp|A7WZR9|CLPP_STAA1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|172048797|sp|A6QF76|CLPP_STAAE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|189082468|sp|A6TZP7|CLPP_STAA2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|189082469|sp|A5IQX2|CLPP_STAA9 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|189082470|sp|A8Z045|CLPP_STAAT RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|13700659|dbj|BAB41956.1| clpP [Staphylococcus aureus subsp. aureus N315]
 gi|14246537|dbj|BAB56930.1| ATP-dependent Clp protease proteolytic subunit homologue
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|21203896|dbj|BAB94595.1| clpP [Staphylococcus aureus subsp. aureus MW2]
 gi|49241154|emb|CAG39832.1| putative ATP-dependent Clp protease proteolytic subunit
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49244083|emb|CAG42509.1| putative ATP-dependent Clp protease proteolytic subunit
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57284295|gb|AAW36389.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus COL]
 gi|82656005|emb|CAI80410.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus RF122]
 gi|87127458|gb|ABD21972.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|87202109|gb|ABD29919.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|147740297|gb|ABQ48595.1| ATP-dependent Clp protease proteolytic subunit ClpP [Staphylococcus
           aureus subsp. aureus JH9]
 gi|149945729|gb|ABR51665.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus JH1]
 gi|150373748|dbj|BAF67008.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156721231|dbj|BAF77648.1| ATP-dependent Clp protease proteolytic subunit homologue
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|160367847|gb|ABX28818.1| S14 family endopeptidase ClpP [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253724847|gb|EES93576.1| ATP-dependent Clp protease proteolytic subunit family protein
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253729257|gb|EES97986.1| ATP-dependent Clp protease proteolytic subunit family protein
           [Staphylococcus aureus subsp. aureus TCH130]
 gi|257272458|gb|EEV04581.1| clp protease [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275749|gb|EEV07222.1| clp protease [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257279384|gb|EEV09985.1| endopeptidase ClpP [Staphylococcus aureus subsp. aureus 68-397]
 gi|257282303|gb|EEV12438.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257284983|gb|EEV15102.1| clp protease [Staphylococcus aureus subsp. aureus M876]
 gi|257788882|gb|EEV27222.1| clp protease [Staphylococcus aureus A9781]
 gi|257839019|gb|EEV63498.1| ATP-dependent Clp protease proteolytic subunit ClpP [Staphylococcus
           aureus A9763]
 gi|257842450|gb|EEV66874.1| clp protease [Staphylococcus aureus A9719]
 gi|257846478|gb|EEV70501.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus A9635]
 gi|257847705|gb|EEV71702.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus A9299]
 gi|257852453|gb|EEV76374.1| ATP-dependent Clp protease proteolytic subunit ClpP [Staphylococcus
           aureus A8115]
 gi|257855345|gb|EEV78283.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus A6300]
 gi|257857089|gb|EEV79988.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus A6224]
 gi|257860399|gb|EEV83231.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus A5948]
 gi|257863846|gb|EEV86602.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus A5937]
 gi|259159395|gb|EEW44448.1| hypothetical protein SA930_1868 [Staphylococcus aureus 930918-3]
 gi|259162388|gb|EEW46960.1| hypothetical protein SAD30_0974 [Staphylococcus aureus D30]
 gi|262074680|gb|ACY10653.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus ED98]
 gi|269940345|emb|CBI48722.1| putative ATP-dependent Clp protease proteolyticsubunit
           [Staphylococcus aureus subsp. aureus TW20]
 gi|282314395|gb|EFB44785.1| Clp protease [Staphylococcus aureus subsp. aureus C101]
 gi|282317695|gb|EFB48067.1| Clp protease [Staphylococcus aureus subsp. aureus C427]
 gi|282320058|gb|EFB50405.1| Clp protease [Staphylococcus aureus subsp. aureus D139]
 gi|282322642|gb|EFB52964.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus M899]
 gi|282325807|gb|EFB56115.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327822|gb|EFB58104.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282331585|gb|EFB61097.1| endopeptidase ClpP [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282591528|gb|EFB96600.1| Clp protease [Staphylococcus aureus A10102]
 gi|282593724|gb|EFB98716.1| Clp protease [Staphylococcus aureus A9765]
 gi|282596353|gb|EFC01314.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus C160]
 gi|282762560|gb|EFC02699.1| Clp protease [Staphylococcus aureus A8117]
 gi|283460078|gb|EFC07168.1| ATP-dependent Clp protease subunit [Staphylococcus aureus subsp.
           aureus H19]
 gi|283470062|emb|CAQ49273.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus ST398]
 gi|283791051|gb|EFC29866.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|285816470|gb|ADC36957.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus 04-02981]
 gi|290921150|gb|EFD98211.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus M1015]
 gi|291095658|gb|EFE25919.1| Clp protease [Staphylococcus aureus subsp. aureus 58-424]
 gi|291467698|gb|EFF10213.1| Clp protease [Staphylococcus aureus subsp. aureus M809]
 gi|294822634|gb|EFG39074.1| Clp protease [Staphylococcus aureus A9754]
 gi|294968637|gb|EFG44660.1| Clp protease [Staphylococcus aureus A8819]
 gi|295128735|gb|EFG58366.1| Clp protease [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296886759|gb|EFH25663.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|297177889|gb|EFH37138.1| Clp protease [Staphylococcus aureus A8796]
 gi|297576597|gb|EFH95312.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus MN8]
 gi|298694101|gb|ADI97323.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus ED133]
 gi|300886842|gb|EFK82044.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|302332479|gb|ADL22672.1| putative ATP-dependent Clp protease proteolytic subunit
           [Staphylococcus aureus subsp. aureus JKD6159]
 gi|302750665|gb|ADL64842.1| putative ATP-dependent Clp protease proteolytic subunit
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304339972|gb|EFM05916.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|312438803|gb|ADQ77874.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|312829260|emb|CBX34102.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315129024|gb|EFT85021.1| S14 family endopeptidase ClpP [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315194387|gb|EFU24779.1| S14 family endopeptidase ClpP [Staphylococcus aureus subsp. aureus
           CGS00]
 gi|315196246|gb|EFU26600.1| S14 family endopeptidase ClpP [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320139896|gb|EFW31757.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320142013|gb|EFW33841.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus MRSA177]
 gi|323438624|gb|EGA96368.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus O11]
 gi|323441949|gb|EGA99586.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus O46]
 gi|329313489|gb|AEB87902.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus T0131]
 gi|329723806|gb|EGG60334.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus 21189]
 gi|329724642|gb|EGG61149.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus 21172]
 gi|329729644|gb|EGG66045.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 195

 Score =  234 bits (598), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 105/191 (54%), Positives = 149/191 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+E TNRGER+YDIYSRLLK+RI+ +  QI+D++A  I +QLLFL+A++ +K+I
Sbjct: 1   MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG AIYDT+Q IKP + T C+G AASMGS LL+AG KG RFALPNA +
Sbjct: 61  YLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A  I+K + +LN I  +  G++ E+++K  DRD+ ++A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEA 180

Query: 196 CDWGVVDKVLM 206
            ++G++D+V++
Sbjct: 181 KEYGLIDEVMV 191


>gi|28377639|ref|NP_784531.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           plantarum WCFS1]
 gi|254555818|ref|YP_003062235.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           plantarum JDM1]
 gi|300767608|ref|ZP_07077518.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308179799|ref|YP_003923927.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|38257529|sp|Q88YH9|CLPP_LACPL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|28270472|emb|CAD63374.1| endopeptidase Clp, proteolytic subunit [Lactobacillus plantarum
           WCFS1]
 gi|254044745|gb|ACT61538.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           plantarum JDM1]
 gi|300494593|gb|EFK29751.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308045290|gb|ADN97833.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 196

 Score =  234 bits (598), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 106/187 (56%), Positives = 147/187 (78%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP V+EQ++RGER+YDIYSRLLK+RI+ ++G IED+MA  I AQLLFL+A++  K+I LY
Sbjct: 4   VPTVIEQSSRGERAYDIYSRLLKDRIIMLSGPIEDNMANAIIAQLLFLDAQDSGKDIYLY 63

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGVVTAG+AIYDTM FIK  + T  MG AASM S+L S+G KG RFALPN+ IL+H
Sbjct: 64  INSPGGVVTAGLAIYDTMNFIKSDVQTIVMGMAASMASVLASSGTKGKRFALPNSEILIH 123

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  GQ ++IE  A++I+K ++++N+I   N G++ E++    +RD+ +SA EA D+
Sbjct: 124 QPSGGAQGQQTEIEIVAEEILKTRKKINQILADNSGQSVEKLNHDTERDNYLSAQEAKDY 183

Query: 199 GVVDKVL 205
           G++D ++
Sbjct: 184 GLIDDIM 190


>gi|302337810|ref|YP_003803016.1| ATP-dependent Clp protease proteolytic subunit ClpP [Spirochaeta
           smaragdinae DSM 11293]
 gi|301634995|gb|ADK80422.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Spirochaeta
           smaragdinae DSM 11293]
          Length = 205

 Score =  234 bits (597), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 110/189 (58%), Positives = 147/189 (77%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP VVEQT  GERSYDI+SRLLK+RIVF+ G+I D  A L+ AQLLFLE+ +P+++ISL
Sbjct: 8   LVPYVVEQTGVGERSYDIFSRLLKDRIVFLDGEINDATADLVVAQLLFLESLDPERDISL 67

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+AIYDT+Q+IKP + T CMGQAASM +L+L+ G  G RFALP++RIL+
Sbjct: 68  YINSPGGSVTAGLAIYDTIQYIKPDVQTICMGQAASMAALMLTCGSTGKRFALPSSRILI 127

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA DI   A++IV++K+     + ++ GK  E + + L+RD+ +SA EA  
Sbjct: 128 HQPWGGAQGQAVDIGIQAKEIVRLKQLTIRYFSQHTGKGEEVIARDLERDYFLSAEEAVA 187

Query: 198 WGVVDKVLM 206
           +G++DKVL+
Sbjct: 188 YGIIDKVLV 196


>gi|85859380|ref|YP_461582.1| ATP-dependent Clp protease proteolytic subunit [Syntrophus
           aciditrophicus SB]
 gi|108935920|sp|Q2LTK5|CLPP_SYNAS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|85722471|gb|ABC77414.1| ATP-dependent Clp protease proteolytic subunit [Syntrophus
           aciditrophicus SB]
          Length = 194

 Score =  234 bits (597), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 102/193 (52%), Positives = 154/193 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+PMVV+Q  RGER+YDIYSRLLK+RI+F+   I+D +A LI AQLLFLE+E+P KEI
Sbjct: 1   MNLIPMVVQQDGRGERAYDIYSRLLKDRIIFLGTPIDDEVANLIIAQLLFLESEDPDKEI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             Y+N+PGG +++GMAIYDTM++IKPP++T C+GQAASMG+LLL+AGE+G R ALP++RI
Sbjct: 61  FFYLNTPGGHISSGMAIYDTMRYIKPPVATVCVGQAASMGALLLAAGEQGKRSALPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQP GGF GQA+DI+  A++I+++K  L+ I      +  + ++   +RD+ M++ +A
Sbjct: 121 LIHQPLGGFQGQATDIDIQAREILRLKDELSLILADLTNQPLDRIKTDTERDYYMTSQQA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++D++++ R
Sbjct: 181 KEYGIIDEIIVKR 193


>gi|116074350|ref|ZP_01471612.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. RS9916]
 gi|116069655|gb|EAU75407.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. RS9916]
          Length = 229

 Score =  234 bits (597), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 108/194 (55%), Positives = 146/194 (75%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G++P VVEQ+ RGER++DIYSRLL+ERI+F+   I+D +A  + AQLLFLEAE+P+K+I 
Sbjct: 29  GVLPTVVEQSGRGERAFDIYSRLLRERIIFLGTGIDDQVADALVAQLLFLEAEDPEKDIQ 88

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VTAG+AIYDTMQ + P + T C G AASMG+ LLS G KG R ALPNARI+
Sbjct: 89  IYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIM 148

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA DIE  AQ+I+ +K  LN +  ++ G+  E + +  DRDH +S +EA 
Sbjct: 149 IHQPMGGAQGQAVDIEIQAQEILYLKETLNGLMAEHTGQPLETIAEDTDRDHFLSPAEAV 208

Query: 197 DWGVVDKVLMSRID 210
           ++G++D+V+ S  D
Sbjct: 209 EYGLIDRVVDSPAD 222


>gi|291563765|emb|CBL42581.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [butyrate-producing bacterium SS3/4]
          Length = 193

 Score =  234 bits (597), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 107/190 (56%), Positives = 148/190 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+E T+RGERSYDIYSRLLK+RI+F+  ++ D  A+L+ AQLLFLE+E+P K+I
Sbjct: 1   MSLVPYVLESTSRGERSYDIYSRLLKDRIIFLGEEVNDVTASLVVAQLLFLESEDPNKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGG VTAGMAIYDTM +IK  + T C+G AASMG+ LLS+G KG RFALPNA +
Sbjct: 61  NLYINSPGGSVTAGMAIYDTMNYIKCDVCTTCIGMAASMGAFLLSSGAKGKRFALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I+  A+ I+K K +LN+I   N G+  + + +  +RD+ M+A EA
Sbjct: 121 MIHQPSGGAQGQATEIKIVAEQILKTKEKLNKILAANTGQPLDVIARDTERDNYMTAEEA 180

Query: 196 CDWGVVDKVL 205
             +G++D+V+
Sbjct: 181 AAYGLIDRVI 190


>gi|220932330|ref|YP_002509238.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Halothermothrix orenii H 168]
 gi|259585957|sp|B8CY74|CLPP_HALOH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|219993640|gb|ACL70243.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Halothermothrix orenii H 168]
          Length = 198

 Score =  234 bits (597), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 110/190 (57%), Positives = 158/190 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P+VVEQTNRGERSYDIYSRLLK+RIVF+   I D ++ LI AQLLFLEAE+P K+I
Sbjct: 1   MSLIPVVVEQTNRGERSYDIYSRLLKDRIVFLGHPINDELSNLIIAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTA +A+YDT+Q+IKP ++T CMGQAAS G+LLL++G KG R+ALPNAR+
Sbjct: 61  HLYINSPGGSVTAALAMYDTIQYIKPDVATICMGQAASAGALLLASGTKGKRYALPNARV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP+GG  G+A++ E H +++++++ RLNEI  K+ GK+ E++ K +++D+ M+A EA
Sbjct: 121 MIHQPAGGVQGKATEAEIHIKELLRLRERLNEILSKHTGKSVEQISKDVEQDYFMTAEEA 180

Query: 196 CDWGVVDKVL 205
            ++G++D+V+
Sbjct: 181 LEYGIIDEVI 190


>gi|224475912|ref|YP_002633518.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           carnosus subsp. carnosus TM300]
 gi|254763800|sp|B9DJL4|CLPP_STACT RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|222420519|emb|CAL27333.1| putative ATP-dependent Clp protease proteolytic subunit
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 194

 Score =  234 bits (597), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 105/190 (55%), Positives = 148/190 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+E TNRGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL+A++ +K+I
Sbjct: 1   MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLQAQDAEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG AIYDT+Q IKP + T C+G AASMGS LL+AG KG RFALPNA +
Sbjct: 61  YLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A  I+K + +LN+I  +  G++ E++EK  DRD+ ++A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAATHILKTRAKLNKILAERTGQSIEQIEKDTDRDNFLTADEA 180

Query: 196 CDWGVVDKVL 205
            ++G++D+V+
Sbjct: 181 KEYGLIDEVM 190


>gi|294500553|ref|YP_003564253.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           megaterium QM B1551]
 gi|294350490|gb|ADE70819.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           megaterium QM B1551]
          Length = 193

 Score =  234 bits (597), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 106/193 (54%), Positives = 146/193 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P V+EQ+NRGERSYDIYSRLLK+RI+ +  +I DH+A  + AQLLFL A++P+K+I
Sbjct: 1   MSTIPYVIEQSNRGERSYDIYSRLLKDRIILIGDEINDHIANSVVAQLLFLAADDPKKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG  +AG AIYDTMQ+I+P + T C G AAS G+LLL AG KG R+ALPN+ I
Sbjct: 61  SLYINSPGGSTSAGFAIYDTMQYIEPDVQTICTGMAASFGALLLLAGAKGKRYALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K+K+ +NEI     G+  E+V    +RD+ MSA EA
Sbjct: 121 MIHQPLGGARGQATEIEISARRILKLKQHINEIISTRTGQPVEKVANDTERDYFMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++GV+D +L+ +
Sbjct: 181 KEYGVIDGILLPK 193


>gi|148543625|ref|YP_001270995.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           reuteri DSM 20016]
 gi|184153034|ref|YP_001841375.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           reuteri JCM 1112]
 gi|194468177|ref|ZP_03074163.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           reuteri 100-23]
 gi|227363410|ref|ZP_03847534.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           reuteri MM2-3]
 gi|227545094|ref|ZP_03975143.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           reuteri CF48-3A]
 gi|300909236|ref|ZP_07126697.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           reuteri SD2112]
 gi|325681981|ref|ZP_08161499.1| ATP-dependent Clp protease, protease subunit [Lactobacillus reuteri
           MM4-1A]
 gi|167008650|sp|A5VII4|CLPP_LACRD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706458|sp|B2G613|CLPP_LACRJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|148530659|gb|ABQ82658.1| ATP-dependent Clp protease proteolytic subunit ClpP [Lactobacillus
           reuteri DSM 20016]
 gi|183224378|dbj|BAG24895.1| endopeptidase Clp proteolytic subunit [Lactobacillus reuteri JCM
           1112]
 gi|194453030|gb|EDX41928.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           reuteri 100-23]
 gi|227071510|gb|EEI09809.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           reuteri MM2-3]
 gi|227184943|gb|EEI65014.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           reuteri CF48-3A]
 gi|300893101|gb|EFK86460.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           reuteri SD2112]
 gi|324978625|gb|EGC15574.1| ATP-dependent Clp protease, protease subunit [Lactobacillus reuteri
           MM4-1A]
          Length = 197

 Score =  234 bits (596), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 106/190 (55%), Positives = 147/190 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQ++RGER+YDIYSRLLK+RI+ ++G IED MA  I AQLLFL+A++  K+I
Sbjct: 1   MNLVPTVIEQSSRGERAYDIYSRLLKDRIIMLSGPIEDEMANSIVAQLLFLDAQDSTKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVT+GMAIYDTM FIK  + T  +G AASM S+L+S+G KG RF LP++++
Sbjct: 61  YLYINSPGGVVTSGMAIYDTMNFIKADVQTIVIGMAASMASVLVSSGAKGKRFGLPHSQV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQPSGG  GQ ++IE  A +I+K ++ LN I  KN G+  E+++   +RDH ++A EA
Sbjct: 121 LIHQPSGGAQGQQTEIEIAATEILKTRKMLNGILAKNSGQPIEKIQADTERDHYLTAQEA 180

Query: 196 CDWGVVDKVL 205
            D+G++D V+
Sbjct: 181 VDYGLLDGVM 190


>gi|284046814|ref|YP_003397154.1| ATP-dependent Clp protease proteolytic subunit ClpP [Conexibacter
           woesei DSM 14684]
 gi|283951035|gb|ADB53779.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Conexibacter
           woesei DSM 14684]
          Length = 193

 Score =  234 bits (596), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 105/190 (55%), Positives = 144/190 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMV+E+T RGER +DIYSRLL ERI+F+   ++D +A LI AQLL LE+ +P K+I
Sbjct: 1   MPLVPMVIERTARGEREFDIYSRLLNERIIFLGTAVDDQVANLIVAQLLHLESSDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGG + AG+AIYDTMQFIKP + T C G A SMGSLLL  G +G R +LPN+RI
Sbjct: 61  SIYINSPGGSIYAGLAIYDTMQFIKPDVQTICCGIAMSMGSLLLMGGARGKRMSLPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQPS GF GQ++DIE HA++I+K ++R++EIY  + G+  E V   ++RD      EA
Sbjct: 121 LIHQPSAGFEGQSTDIEIHAREIIKTRKRIDEIYAFHTGQPEERVNHDMERDRFFKPDEA 180

Query: 196 CDWGVVDKVL 205
            ++G++D+V+
Sbjct: 181 VEYGLIDRVI 190


>gi|293375439|ref|ZP_06621720.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Turicibacter
           sanguinis PC909]
 gi|325844477|ref|ZP_08168204.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Turicibacter sp. HGF1]
 gi|292645992|gb|EFF64021.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Turicibacter
           sanguinis PC909]
 gi|325489151|gb|EGC91535.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Turicibacter sp. HGF1]
          Length = 199

 Score =  234 bits (596), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 105/194 (54%), Positives = 148/194 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQT  GER+YDIYSRLLK+RI+ ++G+I DH A ++ AQLLFL AE+P K+I++
Sbjct: 4   LVPTVIEQTAHGERAYDIYSRLLKDRIIMLSGEINDHTANIVVAQLLFLAAEDPDKDINI 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+AI+DTM +IK  +ST C+G AASMG+ LL+AG KG R+ LPN+ +++
Sbjct: 64  YINSPGGSVTAGLAIFDTMNYIKCDVSTICVGMAASMGAFLLTAGTKGKRYVLPNSEVMI 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA++I   A+ I+K + RLN+I  +  G+  E++E+  +RD+ MSA EA  
Sbjct: 124 HQPLGGAQGQATEIAIAAKHILKTRDRLNKILAEQTGQPLEKIEQDTERDNFMSADEAVA 183

Query: 198 WGVVDKVLMSRIDI 211
           +G+VD+V+    D+
Sbjct: 184 YGLVDQVVTRPTDV 197


>gi|260889843|ref|ZP_05901106.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Leptotrichia
           hofstadii F0254]
 gi|260860449|gb|EEX74949.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Leptotrichia
           hofstadii F0254]
          Length = 208

 Score =  234 bits (596), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 105/186 (56%), Positives = 149/186 (80%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P+V+E   RGERSYDIYSRLLK+RI+FV+G++ED MA  I AQLLFL+A++ +K+I +YI
Sbjct: 23  PVVIENDGRGERSYDIYSRLLKDRIIFVSGEVEDGMANAIVAQLLFLDAQDNEKDIVMYI 82

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGGV+TAG+AIYDTM+ IK  +ST C+GQAASMG++LL+AG KG R++LPN+RI++HQ
Sbjct: 83  NSPGGVITAGLAIYDTMRHIKSDVSTVCVGQAASMGAVLLAAGAKGKRYSLPNSRIMIHQ 142

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQA+DI+  A++I ++K   ++I  +  GK+ EE+    +RD+ MS  EA ++G
Sbjct: 143 PLGGARGQATDIQIQAKEIERMKEITSKILSEATGKSVEEIYADTERDNFMSPEEAVNYG 202

Query: 200 VVDKVL 205
           ++DK+L
Sbjct: 203 LIDKIL 208


>gi|301060520|ref|ZP_07201360.1| ATP-dependent Clp protease, proteolytic subunit ClpP [delta
           proteobacterium NaphS2]
 gi|300445363|gb|EFK09288.1| ATP-dependent Clp protease, proteolytic subunit ClpP [delta
           proteobacterium NaphS2]
          Length = 202

 Score =  234 bits (596), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 106/191 (55%), Positives = 153/191 (80%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+PMV+EQ++RGER+YDIYSRLLK+RI+F+T Q+ D MA  + AQ+LFLE+E+P+K+I +
Sbjct: 2   LIPMVIEQSSRGERAYDIYSRLLKDRIIFITDQVADPMANTVIAQMLFLESEDPEKDIHM 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+AIYDTMQ+IKP ++T CMGQ +SM +LLL+AG K  R+ALP++RI++
Sbjct: 62  YINSPGGSVTAGLAIYDTMQYIKPDVATICMGQTSSMAALLLAAGAKEKRYALPHSRIMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DI+ HA++I+KI+  LN+I  ++ G   + + K  +RD  M + +A D
Sbjct: 122 HQPLGGAQGQATDIDIHAREILKIRDNLNQILAEHTGTDIKRIRKDTERDFFMDSQQAKD 181

Query: 198 WGVVDKVLMSR 208
           +G++D+V+  R
Sbjct: 182 YGIIDRVIHKR 192


>gi|299140390|ref|ZP_07033550.1| Endopeptidase Clp [Acidobacterium sp. MP5ACTX8]
 gi|298597640|gb|EFI53818.1| Endopeptidase Clp [Acidobacterium sp. MP5ACTX8]
          Length = 191

 Score =  234 bits (596), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 104/186 (55%), Positives = 149/186 (80%), Gaps = 1/186 (0%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MV+EQT+RGERSYDIYSRLL++ I+F+   I+D++A LI AQ+LFL  E+P+K+I LYIN
Sbjct: 1   MVLEQTSRGERSYDIYSRLLRDNIIFLGTPIDDNVANLIIAQMLFLSGEDPEKDIQLYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGG ++AG+AIYDTMQ+IK  + TFC+GQAASMG+ LL AG+KG RF LPN+RIL+HQP
Sbjct: 61  SPGGSISAGLAIYDTMQYIKNDVVTFCIGQAASMGAFLLMAGKKGKRFTLPNSRILIHQP 120

Query: 141 S-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           S GG  GQA+DI+ HA++I++I+   N +   N G+  + +E+ ++RD IM+A +A ++G
Sbjct: 121 SMGGLGGQATDIDIHAREILRIRELTNRLMSANTGQPLDRIERDVERDFIMTAPQAKEYG 180

Query: 200 VVDKVL 205
           ++D ++
Sbjct: 181 IIDDII 186


>gi|183179518|ref|ZP_02957729.1| Clp protease [Vibrio cholerae MZO-3]
 gi|183012929|gb|EDT88229.1| Clp protease [Vibrio cholerae MZO-3]
          Length = 156

 Score =  234 bits (596), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 106/151 (70%), Positives = 126/151 (83%)

Query: 8   KKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           K     +F  LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ AQLLFLE
Sbjct: 6   KNAMSPIFDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLE 65

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           +ENP K+I LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+ G  G R
Sbjct: 66  SENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKR 125

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDI 158
           + LPN+R+++HQP GGF GQASDI+ HAQ+ 
Sbjct: 126 YVLPNSRVMIHQPLGGFQGQASDIQIHAQEF 156


>gi|223043057|ref|ZP_03613105.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus capitis SK14]
 gi|222443911|gb|EEE50008.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus capitis SK14]
          Length = 195

 Score =  234 bits (596), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 104/190 (54%), Positives = 148/190 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+E TNRGER+YDIYSRLLK+RI+ +  QI+D++A  I +QLLFL+A++ +K+I
Sbjct: 1   MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG AIYDT+Q IKP + T C+G AASMGS LL+AG KG RFALPNA +
Sbjct: 61  YLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A  I+K + +LN I  +  G++ E++++  DRD+ ++A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAANHILKTREKLNRILAERTGQSIEKIQQDTDRDNFLTAEEA 180

Query: 196 CDWGVVDKVL 205
            ++G++D+V+
Sbjct: 181 KEYGLIDEVM 190


>gi|307299175|ref|ZP_07578976.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306914971|gb|EFN45357.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 205

 Score =  233 bits (595), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 104/197 (52%), Positives = 153/197 (77%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            VP VVE   RGER +DIY++LL ERIVF+   I+D ++ ++ AQLLFLE+++P+K+I+L
Sbjct: 8   FVPYVVEDRGRGERIFDIYTKLLSERIVFLGWPIDDEVSNIVVAQLLFLESQDPEKDINL 67

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +T+G+AIYDTMQ+IKP IST C+G AASMG++LL+ G KG RFALPN+R+++
Sbjct: 68  YINSPGGSITSGLAIYDTMQYIKPDISTICIGMAASMGAILLAGGTKGKRFALPNSRVMI 127

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  G A DIE  A++I+ ++  LN+I  K+ G++ +++EK  DRD  MS++EA +
Sbjct: 128 HQPFGGAEGVAKDIEIRAREILYLRDELNKILAKHTGQSIKKIEKDADRDFFMSSTEAVE 187

Query: 198 WGVVDKVLMSRIDIEEK 214
           +G++DKV+  +  ++ K
Sbjct: 188 YGMIDKVIEQKAKVKTK 204


>gi|312218146|emb|CBX98092.1| similar to ATP-dependent clp protease proteolytic subunit
           [Leptosphaeria maculans]
          Length = 206

 Score =  233 bits (595), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 107/192 (55%), Positives = 150/192 (78%), Gaps = 2/192 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V E T  G ++ DI+SRLL+ERI+ + G+++D M+    AQLLFLEA+NP+K IS+Y
Sbjct: 5   IPYVTETTGGGWKTSDIFSRLLQERIICLNGEVDDFMSANCVAQLLFLEADNPEKPISMY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG V+AG+AIYDTM +I+ P+ST CMG AASMGSLLL+ G +G R+ LP+AR+++H
Sbjct: 65  INSPGGSVSAGLAIYDTMNYIRSPVSTICMGIAASMGSLLLAGGAEGHRYILPHARVMIH 124

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK--TYEEVEKTLDRDHIMSASEAC 196
           QPSGG+ G+ASDI  HA++I++I+ +LN+IY  +  K  T EE+EK ++RD+ M A EA 
Sbjct: 125 QPSGGYRGKASDIADHAKEILRIRDKLNKIYQSHVTKKRTLEEIEKYMERDYFMDAQEAV 184

Query: 197 DWGVVDKVLMSR 208
           D+G+VDK+L  R
Sbjct: 185 DFGIVDKILEKR 196


>gi|27467469|ref|NP_764106.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           epidermidis ATCC 12228]
 gi|57866412|ref|YP_188029.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus epidermidis RP62A]
 gi|242242138|ref|ZP_04796583.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           epidermidis W23144]
 gi|251810202|ref|ZP_04824675.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|282875651|ref|ZP_06284522.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus epidermidis SK135]
 gi|293368230|ref|ZP_06614859.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|38257586|sp|Q8CTE0|CLPP_STAES RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|67460168|sp|Q5HQW0|CLPP_STAEQ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|27315012|gb|AAO04148.1|AE016745_247 ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           epidermidis ATCC 12228]
 gi|57637070|gb|AAW53858.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus epidermidis RP62A]
 gi|242234451|gb|EES36763.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           epidermidis W23144]
 gi|251806254|gb|EES58911.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|281295678|gb|EFA88201.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus epidermidis SK135]
 gi|291317653|gb|EFE58070.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|319401155|gb|EFV89370.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus epidermidis FRI909]
 gi|329723271|gb|EGG59801.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Staphylococcus epidermidis VCU144]
 gi|329736698|gb|EGG72963.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Staphylococcus epidermidis VCU028]
 gi|329738003|gb|EGG74227.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Staphylococcus epidermidis VCU045]
          Length = 194

 Score =  233 bits (595), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 104/190 (54%), Positives = 149/190 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+E TNRGER+YDIYSRLLK+RI+ +  QI+D++A  I +QLLFL+A++ +K+I
Sbjct: 1   MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG AIYDT+Q IKP + T C+G AASMGS LL+AG KG RFALPNA +
Sbjct: 61  YLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A  I+K + +LN I  +  G++ E++++  DRD+ ++A+EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQQDTDRDNFLTAAEA 180

Query: 196 CDWGVVDKVL 205
            ++G++D+V+
Sbjct: 181 KEYGLIDEVM 190


>gi|126649375|ref|ZP_01721616.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sp.
           B14905]
 gi|169826051|ref|YP_001696209.1| ATP-dependent Clp protease proteolytic subunit [Lysinibacillus
           sphaericus C3-41]
 gi|226706460|sp|B1HVR0|CLPP_LYSSC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|126593700|gb|EAZ87623.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sp.
           B14905]
 gi|168990539|gb|ACA38079.1| ATP-dependent Clp protease proteolytic subunit 1 [Lysinibacillus
           sphaericus C3-41]
          Length = 197

 Score =  233 bits (595), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 106/195 (54%), Positives = 147/195 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT+RGER+YDIYSRLLK+RI+ +   I+D++A  I AQLLFL+AE+P K+I
Sbjct: 1   MNLIPTVIEQTSRGERAYDIYSRLLKDRIILLGSAIDDNVANSIVAQLLFLQAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG +TAGMAIYDTMQ IKP + T C+G AASMG+ LL+AGE G RFALPNA +
Sbjct: 61  SLYINSPGGSITAGMAIYDTMQIIKPKVQTICIGMAASMGAFLLAAGEPGKRFALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN I  +  G+  E + +  DRD+ M+A  A
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILFLREKLNGILSERTGQPLEVIARDTDRDNFMTAERA 180

Query: 196 CDWGVVDKVLMSRID 210
            ++G++D ++    D
Sbjct: 181 KEYGLIDHIMHRSTD 195


>gi|314933077|ref|ZP_07840443.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus caprae C87]
 gi|313654396|gb|EFS18152.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus caprae C87]
          Length = 195

 Score =  233 bits (595), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 104/190 (54%), Positives = 148/190 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+E TNRGER+YDIYSRLLK+RI+ +  QI+D++A  I +QLLFL+A++ +K+I
Sbjct: 1   MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG AIYDT+Q IKP + T C+G AASMGS LL+AG KG RFALPNA +
Sbjct: 61  YLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A  I+K + +LN I  +  G++ E++++  DRD+ ++A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAANHILKTREKLNRILAERTGQSIEKIQQDTDRDNFLTAEEA 180

Query: 196 CDWGVVDKVL 205
            ++G++D+V+
Sbjct: 181 KEYGLIDEVM 190


>gi|313884960|ref|ZP_07818712.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619651|gb|EFR31088.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Eremococcus coleocola ACS-139-V-Col8]
          Length = 200

 Score =  233 bits (595), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 106/199 (53%), Positives = 150/199 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+E T+RGER+YDIYSRLLK+RI+ ++G++ D MA  + AQLLFL+A++P K+I
Sbjct: 1   MNLVPTVIENTSRGERAYDIYSRLLKDRIIMLSGEVNDAMANSVIAQLLFLDAQDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMA+YDTMQFI   + T  +G AASMGS+LL+AG KG R+ALPNA +
Sbjct: 61  YLYINSPGGSVTAGMAMYDTMQFINADVQTIVIGMAASMGSVLLAAGTKGKRWALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+  + RLN+I     G+  E ++K  DRD+ M+A +A
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKHILLTRDRLNKILSDATGQDLEVIQKDTDRDNFMTAQQA 180

Query: 196 CDWGVVDKVLMSRIDIEEK 214
            D+G++D ++ +   ++EK
Sbjct: 181 LDYGLIDGIMENAKKLKEK 199


>gi|254421271|ref|ZP_05034989.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. PCC 7335]
 gi|196188760|gb|EDX83724.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. PCC 7335]
          Length = 269

 Score =  233 bits (595), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 107/188 (56%), Positives = 146/188 (77%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++PMVVEQ+ RGER++DIYSRLL+ERIVF+   + D +A  I AQLLFL+AE+P+K++ L
Sbjct: 68  MLPMVVEQSGRGERAFDIYSRLLRERIVFLGTPVMDDIADSIVAQLLFLDAEDPEKDVQL 127

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGMAIYDTMQ I+P + T C G AASMG+ LLS G KG R +LP+ARI++
Sbjct: 128 YINSPGGSVTAGMAIYDTMQQIRPDVVTICFGLAASMGAFLLSGGAKGKRMSLPSARIMI 187

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQ++DIE  A++I+ +K+RLNE+   + G+    +E   +RD  MSA EA +
Sbjct: 188 HQPSGGAQGQSADIEIQAREILYLKKRLNEMLADHTGQDISRIEADTERDFFMSAEEAKE 247

Query: 198 WGVVDKVL 205
           +G++D+V+
Sbjct: 248 YGLIDQVV 255


>gi|256848088|ref|ZP_05553532.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           coleohominis 101-4-CHN]
 gi|256715148|gb|EEU30125.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           coleohominis 101-4-CHN]
          Length = 197

 Score =  233 bits (594), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 104/193 (53%), Positives = 150/193 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQ++RGER+YDIYSRLLK+RI+ ++G IED MA  I AQLLFL+A++  K+I
Sbjct: 1   MNLVPTVIEQSSRGERAYDIYSRLLKDRIIMLSGPIEDDMANSIVAQLLFLDAQDSTKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVT+GMAIYDTM FIK  + T  +G AASM S+L+S+G KG RF LP++++
Sbjct: 61  YLYINSPGGVVTSGMAIYDTMNFIKADVQTIVIGMAASMASVLVSSGAKGKRFGLPHSQV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQPSGG  GQ ++IE  A +I+K ++ +NEI  +N G+  E++ +  +RDH ++A EA
Sbjct: 121 LIHQPSGGAQGQQTEIEIAATEILKTRKMINEILAENSGQPIEKINQDTERDHYLTAQEA 180

Query: 196 CDWGVVDKVLMSR 208
            D+G++D ++ ++
Sbjct: 181 VDYGLLDGIMENK 193


>gi|227872170|ref|ZP_03990538.1| endopeptidase Clp [Oribacterium sinus F0268]
 gi|227841983|gb|EEJ52245.1| endopeptidase Clp [Oribacterium sinus F0268]
          Length = 208

 Score =  233 bits (594), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 106/196 (54%), Positives = 148/196 (75%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V++ T+RGERSYDI+SRLL ERIVF+  ++    A+L+ AQLLFLE+E+P K+ISLY
Sbjct: 13  IPYVIQSTSRGERSYDIFSRLLNERIVFLGDEVNSDTASLVIAQLLFLESEDPDKDISLY 72

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAGM IYDTMQ+IK  +ST C+G AASMG+ LL+ G KG R  LPNA +++H
Sbjct: 73  INSPGGSVTAGMGIYDTMQYIKCDVSTICVGMAASMGAFLLAGGAKGKRMILPNAEVMIH 132

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  GQA++I+  A+ I++ K+ L +I  +NC + +E+V    +RD+ MSA +A ++
Sbjct: 133 QPSGGAQGQATEIQITAEWILRTKKNLAKILAENCNQPFEKVMADTERDYWMSAEQALEY 192

Query: 199 GVVDKVLMSRIDIEEK 214
           G+VD +   R D+E+K
Sbjct: 193 GLVDHIFQKRTDLEKK 208


>gi|330921326|ref|XP_003299376.1| hypothetical protein PTT_10352 [Pyrenophora teres f. teres 0-1]
 gi|311326959|gb|EFQ92512.1| hypothetical protein PTT_10352 [Pyrenophora teres f. teres 0-1]
          Length = 248

 Score =  233 bits (594), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 107/192 (55%), Positives = 150/192 (78%), Gaps = 2/192 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V E T  G ++ DI+SRLL+ERI+ + G+++D M+    AQLLFLEA+NP+K IS+Y
Sbjct: 47  IPYVTETTGGGWKTSDIFSRLLQERIICLNGEVDDFMSANAVAQLLFLEADNPEKPISMY 106

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG V+AG+AIYDTM +IK P+ST CMG AASMGSLLL+ G +G R+ LP+AR+++H
Sbjct: 107 INSPGGSVSAGLAIYDTMNYIKSPVSTICMGIAASMGSLLLAGGAEGQRYILPHARVMIH 166

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKN--CGKTYEEVEKTLDRDHIMSASEAC 196
           QPSGG+SG+ASDI  HA++I++I+ +LN IY  +    +T EE+EK ++RD+ M A EA 
Sbjct: 167 QPSGGYSGKASDIADHAKEILRIRDKLNRIYQSHLTTKRTLEEIEKYMERDYYMDAQEAV 226

Query: 197 DWGVVDKVLMSR 208
           ++G+VDK+L  R
Sbjct: 227 EFGIVDKILEKR 238


>gi|323465060|gb|ADX77213.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus pseudintermedius ED99]
          Length = 195

 Score =  233 bits (594), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 105/190 (55%), Positives = 148/190 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+E TNRGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL+A++ +K+I
Sbjct: 1   MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLQAQDAEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG AIYDT+Q IKP + T C+G AASMGS LL+AG KG RFALPNA +
Sbjct: 61  YLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I++ + RLN+I  +  G+  E++EK  DRD+ ++A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKHILRTRERLNKILSERTGQPIEKIEKDTDRDNFLTAQEA 180

Query: 196 CDWGVVDKVL 205
            ++G++D+V+
Sbjct: 181 KEYGLIDEVM 190


>gi|171915864|ref|ZP_02931334.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Verrucomicrobium spinosum DSM 4136]
          Length = 237

 Score =  233 bits (594), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 105/188 (55%), Positives = 147/188 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+E   R ER+YDIYSRLLK+RI+F+   I+D +A ++ AQLLFL+ ++P+K+I++
Sbjct: 18  IIPTVIEAEGRMERAYDIYSRLLKDRIIFIGTPIDDQVANIVIAQLLFLQMQDPKKDINI 77

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+AIYDTMQF+   ++T+C+G AASMG++LL+AG KG R+ALPN+ I++
Sbjct: 78  YINSPGGSVTAGLAIYDTMQFVTCDVNTYCIGIAASMGAVLLTAGTKGKRYALPNSHIMI 137

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQ SGG  G ASD+ER  + + ++KRRLN+I   + GKT E VE+  DRD+ MS  EA  
Sbjct: 138 HQVSGGAQGTASDVERTVEFMYRLKRRLNKIISHHTGKTVEAVERDADRDYYMSGEEAAA 197

Query: 198 WGVVDKVL 205
           +G+VDKVL
Sbjct: 198 YGIVDKVL 205


>gi|70727122|ref|YP_254036.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           haemolyticus JCSC1435]
 gi|124013829|sp|Q4L4J5|CLPP_STAHJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|68447846|dbj|BAE05430.1| clpP [Staphylococcus haemolyticus JCSC1435]
          Length = 195

 Score =  233 bits (594), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 104/190 (54%), Positives = 147/190 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+E TNRGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL+A++ +K+I
Sbjct: 1   MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLQAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG AIYDT+Q IKP + T C+G AASMGS LL+AG KG RFALPNA +
Sbjct: 61  YLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A  I+K + +LN+I  +  G++ E+++K  DRD+ ++A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAANHILKTREKLNKILAERTGQSIEKIQKDTDRDNFLTADEA 180

Query: 196 CDWGVVDKVL 205
            ++G++D V+
Sbjct: 181 KEYGLIDNVM 190


>gi|325680788|ref|ZP_08160326.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Ruminococcus albus 8]
 gi|324107568|gb|EGC01846.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Ruminococcus albus 8]
          Length = 196

 Score =  233 bits (594), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 107/196 (54%), Positives = 150/196 (76%), Gaps = 3/196 (1%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP VVEQT+RGERS DI+SRLL +RI+ +   I+DH+A+L+ AQLLFLE+++P+K+I
Sbjct: 1   MALVPYVVEQTSRGERSMDIFSRLLNDRIIMLCEPIDDHVASLVTAQLLFLESQDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMAIYDTM +IK  ++T CMG AASMG+ LLS G KG RF+LPN+ I
Sbjct: 61  DLYINSPGGSVTAGMAIYDTMNYIKCDVNTICMGMAASMGAFLLSCGTKGKRFSLPNSEI 120

Query: 136 LLHQP---SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           ++HQP    GG SGQ +D++ H+  +V  + +LN+I  +N GK+ E++    +RD+ +SA
Sbjct: 121 MIHQPLIGGGGISGQCTDVKIHSDHLVATREKLNKILAENTGKSIEQIAIDTERDNYLSA 180

Query: 193 SEACDWGVVDKVLMSR 208
            EA ++G++DKV+  R
Sbjct: 181 QEAMEYGLIDKVISKR 196


>gi|315648325|ref|ZP_07901425.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
           vortex V453]
 gi|315276260|gb|EFU39604.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
           vortex V453]
          Length = 193

 Score =  233 bits (594), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 109/192 (56%), Positives = 142/192 (73%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + +VP VVEQTNRGERSYDIYSRLLK+RIVFV   I+D +A  I AQLLFL AE+P+K+I
Sbjct: 1   MNIVPYVVEQTNRGERSYDIYSRLLKDRIVFVGAAIDDAIANSIIAQLLFLAAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG V+AG  IYDTMQ IKP +ST C G AAS G++LL AG  G R ALPN+ I
Sbjct: 61  HMYINSPGGSVSAGFGIYDTMQIIKPQVSTICTGFAASYGAILLLAGATGKRLALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI   A+ I+K + +L  I  +  G++ E VE  ++RD+ MSA EA
Sbjct: 121 MIHQPHGGVQGQATDIAITAKRIIKTREKLAHIISERTGQSVERVEMDMERDYFMSAQEA 180

Query: 196 CDWGVVDKVLMS 207
            D+G++D ++ +
Sbjct: 181 KDYGIIDDIVTN 192


>gi|119473285|ref|ZP_01614937.1| ATP-dependent Clp protease proteolytic subunit [Alteromonadales
           bacterium TW-7]
 gi|119444508|gb|EAW25828.1| ATP-dependent Clp protease proteolytic subunit [Alteromonadales
           bacterium TW-7]
          Length = 173

 Score =  233 bits (594), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 105/169 (62%), Positives = 135/169 (79%)

Query: 40  LKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
            KERI+F+TGQ+ED+MA LI AQ+LFLE+ENP K+I LYINSPGG VTAGMAIYDTM FI
Sbjct: 2   FKERIIFLTGQVEDNMANLILAQMLFLESENPDKDIFLYINSPGGSVTAGMAIYDTMNFI 61

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
           KP +ST C+GQAASMG+ LL+AG KG RF LPN+R+++HQP GGF GQASD E HA++I+
Sbjct: 62  KPDVSTICVGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGFQGQASDFEIHAKEIL 121

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
            IK +LN +  ++ G+  + + K  DRD+ MSASEA ++G+VD V  +R
Sbjct: 122 SIKDKLNRLMAEHTGQPLDVISKDTDRDNFMSASEAVEYGLVDSVFANR 170


>gi|242373003|ref|ZP_04818577.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           epidermidis M23864:W1]
 gi|242349329|gb|EES40930.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           epidermidis M23864:W1]
          Length = 195

 Score =  233 bits (594), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 104/190 (54%), Positives = 147/190 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+E TNRGER+YDIYSRLLK+RI+ +  QI+D++A  I +QLLFL+A++ +K+I
Sbjct: 1   MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG AIYDT+Q IKP + T C+G AASMGS LL+AG KG RFALPNA +
Sbjct: 61  YLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A  I+K + +LN I  +  G++ E++++  DRD+ ++A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAANHILKTREKLNRILAERTGQSIEKIQQDTDRDNFLTAEEA 180

Query: 196 CDWGVVDKVL 205
             +G++D+V+
Sbjct: 181 KSYGLIDEVM 190


>gi|299536206|ref|ZP_07049519.1| ATP-dependent Clp protease proteolytic subunit [Lysinibacillus
           fusiformis ZC1]
 gi|298728192|gb|EFI68754.1| ATP-dependent Clp protease proteolytic subunit [Lysinibacillus
           fusiformis ZC1]
          Length = 196

 Score =  233 bits (593), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 105/190 (55%), Positives = 146/190 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT+RGER+YDIYSRLLK+RI+ +   I+D++A  I AQLLFL+AE+P K+I
Sbjct: 1   MNLIPTVIEQTSRGERAYDIYSRLLKDRIILLGSAIDDNVANSIVAQLLFLQAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG +TAGMAIYDTMQ IKP + T C+G AASMG+ LL+AGE G RFALPNA +
Sbjct: 61  SLYINSPGGSITAGMAIYDTMQIIKPQVQTICIGMAASMGAFLLAAGEPGKRFALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN I  +  G+  E + +  DRD+ M+A  A
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILFLREKLNGILSERTGQPLEVIARDTDRDNFMTAERA 180

Query: 196 CDWGVVDKVL 205
            ++G++D ++
Sbjct: 181 KEYGLIDHIM 190


>gi|67923459|ref|ZP_00516936.1| Peptidase S14, ClpP [Crocosphaera watsonii WH 8501]
 gi|67854694|gb|EAM49976.1| Peptidase S14, ClpP [Crocosphaera watsonii WH 8501]
          Length = 262

 Score =  233 bits (593), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 109/198 (55%), Positives = 151/198 (76%), Gaps = 1/198 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VPMVVEQ+  GER++DIYSRLL+ERIVF+   ++D +A  I AQLLFL+AE+P+K+I L
Sbjct: 59  VVPMVVEQSGVGERAFDIYSRLLRERIVFLGTPVDDQVADSIVAQLLFLDAEDPEKDIQL 118

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+AIYDTMQ I+P + T C G AASMG+ LLS G KG R ALP++RI++
Sbjct: 119 YINSPGGSVYAGLAIYDTMQQIRPDVVTICFGLAASMGAFLLSGGTKGKRMALPSSRIMI 178

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA +IE  A++I+ IK+RLN++  ++ G+ ++ +    +RD  MSA EA D
Sbjct: 179 HQPLGGAQGQAVEIEIQAKEILYIKKRLNDMLAEHTGQPFDTIAADTERDFFMSAQEAVD 238

Query: 198 WGVVDKVLMSRIDIEEKS 215
           +G++DKV+ SR D+ + +
Sbjct: 239 YGLIDKVI-SRSDLSDPT 255


>gi|160902469|ref|YP_001568050.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Petrotoga
           mobilis SJ95]
 gi|160360113|gb|ABX31727.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Petrotoga
           mobilis SJ95]
          Length = 205

 Score =  232 bits (592), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 105/190 (55%), Positives = 150/190 (78%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P+V+E   R ER+YDIYSRLLK+RIVF+   I D +A +I AQLLFLE+++P K+I LY
Sbjct: 5   MPVVIETEGRYERAYDIYSRLLKDRIVFLGTPINDDVANVIIAQLLFLESQDPDKDIFLY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VT+G+ IYDTMQ++KP IST C+GQAASMG++LL+AG KG R++LP +RI++H
Sbjct: 65  INSPGGSVTSGLGIYDTMQYVKPDISTICIGQAASMGAVLLAAGAKGKRYSLPYSRIMIH 124

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  G A DI+ HA++I+++K  LN I  K+ G++ E++EK  +RD  M+A EA ++
Sbjct: 125 QPWGGAEGTAIDIQIHAREILRLKDDLNNILSKHTGQSLEKIEKDTERDFFMNAQEALNY 184

Query: 199 GVVDKVLMSR 208
           G++DKV+ ++
Sbjct: 185 GLIDKVITTK 194


>gi|298243590|ref|ZP_06967397.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ktedonobacter
           racemifer DSM 44963]
 gi|297556644|gb|EFH90508.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ktedonobacter
           racemifer DSM 44963]
          Length = 218

 Score =  232 bits (592), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 103/189 (54%), Positives = 150/189 (79%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G++P VVE T RGERS+D+YSRLLKERI+FV   I+D +A  + AQLL+L++E+  K+I 
Sbjct: 24  GIIPAVVESTPRGERSWDLYSRLLKERIIFVGTPIDDQVANSVVAQLLYLQSEDATKDIQ 83

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGGV+ AG+AIYDTMQ+++P +STFCMG A SMG+++L+AG+KG R+ LPN+ +L
Sbjct: 84  MYINSPGGVIYAGLAIYDTMQWLRPDVSTFCMGMAMSMGAVILAAGQKGKRYTLPNSTVL 143

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA+DIE  A++I++++R L EI  K+ G+T E + +  DR++ +SA +A 
Sbjct: 144 IHQPLGGAEGQAADIEITAREILRLRRNLYEILAKHTGQTIERIMQDSDRNYYLSAQQAV 203

Query: 197 DWGVVDKVL 205
           ++G+VD VL
Sbjct: 204 EYGLVDDVL 212


>gi|257468340|ref|ZP_05632434.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           ulcerans ATCC 49185]
 gi|317062614|ref|ZP_07927099.1| endopeptidase Clp [Fusobacterium ulcerans ATCC 49185]
 gi|313688290|gb|EFS25125.1| endopeptidase Clp [Fusobacterium ulcerans ATCC 49185]
          Length = 191

 Score =  232 bits (592), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 108/186 (58%), Positives = 145/186 (77%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P VVE T R ER+YDIYSRLLK+RI+F+  +I+D++A  I AQLLFLEAE+P K+I +YI
Sbjct: 4   PTVVESTGRSERAYDIYSRLLKDRIIFLGTEIDDNVANAIVAQLLFLEAEDPDKDIIMYI 63

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGGVVTAGMAIYDTM +IKP + T C+GQAASMG+LLL AG KG R+AL ++RI++HQ
Sbjct: 64  NSPGGVVTAGMAIYDTMNYIKPDVQTVCIGQAASMGALLLGAGAKGKRYALEHSRIMIHQ 123

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQA+DIE  A++I+++K  L++I     GK+  E+    +RD+ MSA EA ++G
Sbjct: 124 PLGGARGQATDIEIQAKEILRMKEMLSQIMADCTGKSLSEILNDTERDNYMSAEEAKNYG 183

Query: 200 VVDKVL 205
           ++D+V 
Sbjct: 184 LIDQVF 189


>gi|329922862|ref|ZP_08278378.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Paenibacillus sp. HGF5]
 gi|328941635|gb|EGG37920.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Paenibacillus sp. HGF5]
          Length = 193

 Score =  232 bits (592), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 109/190 (57%), Positives = 142/190 (74%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP VVEQTNRGERSYDIYSRLLK+RIVFV   I+D +A  I AQLLFL AE+P+K+I
Sbjct: 1   MNFVPYVVEQTNRGERSYDIYSRLLKDRIVFVGAAIDDAIANSIIAQLLFLAAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG V+AG  IYDTMQ IKP ++T C G AAS G++LL AG KG R ALPN+ I
Sbjct: 61  HMYINSPGGSVSAGFGIYDTMQIIKPQVNTICTGFAASYGAILLLAGAKGKRLALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI   A+ I+K + +L  I  +  G++ E VEK ++RD+ MSA EA
Sbjct: 121 MIHQPLGGVQGQATDIAITAKRILKTREKLAHIISERTGQSVERVEKDMERDYFMSAEEA 180

Query: 196 CDWGVVDKVL 205
            ++G++D ++
Sbjct: 181 KEYGIIDDIV 190


>gi|330684877|gb|EGG96562.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Staphylococcus epidermidis VCU121]
          Length = 196

 Score =  232 bits (592), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 104/190 (54%), Positives = 148/190 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+E TNRGER+YDIYSRLLK+RI+ +  QI+D++A  I +QLLFL+A++ +K+I
Sbjct: 1   MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG AIYDT+Q IKP + T C+G AASMGS LL+AG KG R+ALPNA +
Sbjct: 61  YLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRYALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A  I+K + +LN I+ +  G++ E++++  DRD+ ++A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAANHILKTREKLNRIFSERTGQSIEKIQQDTDRDNFLTAEEA 180

Query: 196 CDWGVVDKVL 205
             +G+VD+V+
Sbjct: 181 KAYGLVDEVM 190


>gi|295396804|ref|ZP_06806937.1| ATP-dependent Clp protease proteolytic subunit [Aerococcus viridans
           ATCC 11563]
 gi|294974956|gb|EFG50650.1| ATP-dependent Clp protease proteolytic subunit [Aerococcus viridans
           ATCC 11563]
          Length = 198

 Score =  232 bits (592), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 104/198 (52%), Positives = 150/198 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQ++RGER+YDIYSRLLK+RI+ ++G+  D +A  I AQLLFL+A++P K+I
Sbjct: 1   MNLVPTVIEQSSRGERAYDIYSRLLKDRIIMLSGEFNDDLANSIIAQLLFLDAQDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +T+GMAIYDTMQF+   + T  MG AASMGS + +AG KG RFALPNA I
Sbjct: 61  YLYINSPGGSITSGMAIYDTMQFVHADVQTIVMGMAASMGSFIAAAGTKGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQP GG  GQA++IE  A+ I+K K ++N +Y +  G+  E +E+  DRD+ ++A EA
Sbjct: 121 LIHQPLGGAQGQATEIEIAARHILKTKEKMNRLYSEMTGQPVEVIERDTDRDNWLTAEEA 180

Query: 196 CDWGVVDKVLMSRIDIEE 213
            ++G++D+++    ++E+
Sbjct: 181 LEYGLLDQIMTKNDELEK 198


>gi|256074339|ref|XP_002573483.1| peptidase Clp (S14 family) [Schistosoma mansoni]
 gi|238658663|emb|CAZ29715.1| peptidase Clp (S14 family) [Schistosoma mansoni]
          Length = 632

 Score =  232 bits (592), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 106/200 (53%), Positives = 154/200 (77%), Gaps = 1/200 (0%)

Query: 6   CAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF 65
           C    S++ ++ L+PMV++++   ER YDIYSRLLK+RI+ + G + D MA  + AQLLF
Sbjct: 33  CFHTGSQN-YIPLIPMVLDKSTNVERYYDIYSRLLKDRIICLMGAVTDEMAGSVIAQLLF 91

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L++E+ +  I LYINSPGG VTAG+AIYDTMQFI+PP++TFC+GQA+SMGSLLL+AG  G
Sbjct: 92  LQSEDKRTPIHLYINSPGGSVTAGLAIYDTMQFIRPPVATFCIGQASSMGSLLLAAGSHG 151

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
            RFALP++ I++HQPSG   GQASDI+  A+++++ +  +N IY ++  ++ E +EK +D
Sbjct: 152 CRFALPHSSIMVHQPSGSAHGQASDIKIRAEELIRTRSVINTIYERHTKQSQEVIEKWMD 211

Query: 186 RDHIMSASEACDWGVVDKVL 205
           RD+ M+A EA  +G+VD+VL
Sbjct: 212 RDYFMTAEEAVSYGIVDRVL 231


>gi|262199481|ref|YP_003270690.1| endopeptidase Clp [Haliangium ochraceum DSM 14365]
 gi|262082828|gb|ACY18797.1| Endopeptidase Clp [Haliangium ochraceum DSM 14365]
          Length = 202

 Score =  232 bits (592), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 103/186 (55%), Positives = 149/186 (80%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P VVE ++RGER++DIYSRLLK+RIVF+  ++ D +A +I AQLL+LE+E+ +KEI LYI
Sbjct: 12  PYVVESSHRGERTWDIYSRLLKDRIVFLGTEVNDDVANMITAQLLYLESEDAEKEIMLYI 71

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VTAGMAIYDTMQ I+ P++T C+GQAASMG+LLL+AG  G+R +LPN+RI++HQ
Sbjct: 72  NSPGGSVTAGMAIYDTMQHIRCPVATVCVGQAASMGALLLAAGSAGLRRSLPNSRIMIHQ 131

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           PS  F GQASDIE HA++I+  ++R NEI   +  ++ E++ K  +RD+ +  S+A ++G
Sbjct: 132 PSSAFRGQASDIEIHAKEILHTRQRTNEILAHHTKRSIEQIAKDTERDNFLQPSKALEFG 191

Query: 200 VVDKVL 205
           ++D+++
Sbjct: 192 IIDEII 197


>gi|295705906|ref|YP_003598981.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bacillus
           megaterium DSM 319]
 gi|294803565|gb|ADF40631.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           megaterium DSM 319]
          Length = 193

 Score =  232 bits (592), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 104/193 (53%), Positives = 145/193 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P V+EQ+NRGERSYDIYSRLLK+RI+ +  +I DH+A  + AQLLFL A++P+K+I
Sbjct: 1   MSTIPYVIEQSNRGERSYDIYSRLLKDRIILIGDEINDHIANSVVAQLLFLAADDPKKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG  +AG AIYDTMQ+I+P + T C G AAS G+LLL AG KG R+ALPN+ +
Sbjct: 61  SLYINSPGGSTSAGFAIYDTMQYIEPDVQTICTGMAASFGALLLLAGAKGKRYALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K+K+ +NEI     G+  E+V    +RD+ MSA EA
Sbjct: 121 MIHQPLGGARGQATEIEISARRILKLKQHINEIISTRTGQPVEKVANDTERDYFMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D +L+ +
Sbjct: 181 KTYGIIDGILLPK 193


>gi|262198158|ref|YP_003269367.1| ATP-dependent Clp protease proteolytic subunit ClpP [Haliangium
           ochraceum DSM 14365]
 gi|262081505|gb|ACY17474.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Haliangium
           ochraceum DSM 14365]
          Length = 207

 Score =  232 bits (592), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 101/191 (52%), Positives = 153/191 (80%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+EQT+RGER +DI+SRLLKE IVF+   ++D +A +I AQLL LE+E+P+K+I L
Sbjct: 11  MIPTVIEQTHRGERGWDIFSRLLKEGIVFLGTPVDDAVANVIIAQLLHLESEDPEKDIML 70

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+AIYDTMQ+++  ++T CMGQA+SMG+ LL+AG KG RFALP+AR+++
Sbjct: 71  YINSPGGSVTAGLAIYDTMQYLRCDVATICMGQASSMGAFLLAAGAKGKRFALPHARVMI 130

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGFSG A+DI+ +A++++K +  LN +  ++ G+  + + +  +RD+ MSA EAC 
Sbjct: 131 HQPLGGFSGPATDIDIYAREVLKTRETLNRVLAEHTGQPLDRIAEDTERDYFMSADEACA 190

Query: 198 WGVVDKVLMSR 208
           +G++D+V++ +
Sbjct: 191 YGLIDEVIVKK 201


>gi|187735546|ref|YP_001877658.1| Endopeptidase Clp [Akkermansia muciniphila ATCC BAA-835]
 gi|187425598|gb|ACD04877.1| Endopeptidase Clp [Akkermansia muciniphila ATCC BAA-835]
          Length = 218

 Score =  232 bits (591), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 108/198 (54%), Positives = 147/198 (74%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VPMVVEQ  RGER++DIYSRLLK+R++F+   I+D +A  + AQLLFL+  +P+K+I +Y
Sbjct: 17  VPMVVEQDGRGERAFDIYSRLLKDRVIFIGSAIDDDVANSVIAQLLFLQMADPKKDIHVY 76

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDTMQF+   ++T+C+G AASMGS+LL+AG  G RF LPN+ +++H
Sbjct: 77  INSPGGSVTAGLAIYDTMQFVSCDVNTYCLGIAASMGSVLLAAGTPGKRFCLPNSHVMIH 136

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           Q SGG  G ASD+ER    +  +K+RLN I  K+ GKT +++EK  DRD+ M+A EA  +
Sbjct: 137 QVSGGAQGTASDVERTIGFMFNLKKRLNGILAKHTGKTEKQIEKDADRDNYMTAEEAVAY 196

Query: 199 GVVDKVLMSRIDIEEKSK 216
           G+VDKVL    D +   K
Sbjct: 197 GLVDKVLAHHSDDQGDKK 214


>gi|289551370|ref|YP_003472274.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           lugdunensis HKU09-01]
 gi|315658877|ref|ZP_07911744.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           lugdunensis M23590]
 gi|289180901|gb|ADC88146.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           lugdunensis HKU09-01]
 gi|315496001|gb|EFU84329.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           lugdunensis M23590]
          Length = 195

 Score =  232 bits (591), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 104/190 (54%), Positives = 146/190 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+E TNRGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL+A++ +K+I
Sbjct: 1   MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLQAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG AIYDT+Q IKP + T C+G AASMGS LL+AG KG RFALPNA +
Sbjct: 61  YLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A  I+K + +LN I  +  G++ E+++K  DRD+ ++A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAANHILKTREKLNRILAERTGQSIEQIQKDTDRDNFLTAEEA 180

Query: 196 CDWGVVDKVL 205
             +G++D+V+
Sbjct: 181 KAYGLIDEVM 190


>gi|331211899|ref|XP_003307219.1| ATP-dependent Clp protease proteolytic subunit 2 [Puccinia graminis
           f. sp. tritici CRL 75-36-700-3]
 gi|309297622|gb|EFP74213.1| ATP-dependent Clp protease proteolytic subunit 2 [Puccinia graminis
           f. sp. tritici CRL 75-36-700-3]
          Length = 257

 Score =  232 bits (591), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 114/200 (57%), Positives = 149/200 (74%), Gaps = 9/200 (4%)

Query: 17  GLVPMVVEQTNRG-ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           GLVPMV+E+  RG ER++DI+SRLL+ER++FV G+I D  A LI AQLL+LEAE+P   I
Sbjct: 52  GLVPMVIEREGRGGERAFDIFSRLLRERVIFVGGEINDADANLIVAQLLYLEAESPDP-I 110

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG+AIYDTMQ+++ P+ T C+GQA SMGS+LL AG KG R ALPN+ I
Sbjct: 111 ELYINSPGGSVTAGLAIYDTMQYVRSPVHTICIGQACSMGSILLGAGAKGFRKALPNSTI 170

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYE-------EVEKTLDRDH 188
           ++HQPSGG SGQASD+   A +I+++K+RL EIY K+CGK  E         E+ L+RD 
Sbjct: 171 MIHQPSGGSSGQASDMAIRANEILRLKKRLIEIYAKHCGKEDESQTDRCNRFEQALERDK 230

Query: 189 IMSASEACDWGVVDKVLMSR 208
            M    A  +G++D+V+ SR
Sbjct: 231 FMDGESAQAFGIIDQVVASR 250


>gi|24215259|ref|NP_712740.1| ATP-dependent protease ClpP [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45657293|ref|YP_001379.1| ATP-dependent Clp protease proteolytic subunit [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|67460406|sp|Q8F352|CLPP_LEPIN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|67460498|sp|Q72SG6|CLPP1_LEPIC RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|24196349|gb|AAN49758.1| ATP-dependent protease ClpP [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45600531|gb|AAS70016.1| ATP-dependent Clp protease, proteolytic subunit [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
          Length = 198

 Score =  232 bits (591), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 109/190 (57%), Positives = 152/190 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++P V+EQT+RGERSYDI+SRLLK+RI+F+   I D  A +I AQLLFLEAENP+++I
Sbjct: 1   MSVIPYVIEQTSRGERSYDIFSRLLKDRIIFLGNAINDDYANVITAQLLFLEAENPERDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LY+NSPGG V++G+AIYDTMQ+IKP + T C+GQA+SM +LLL+ G  G R ALPNARI
Sbjct: 61  YLYLNSPGGYVSSGLAIYDTMQYIKPDVRTLCLGQASSMAALLLAGGAAGKRSALPNARI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG +GQASDIE  A++++K+K  LN IY K+ GKT E+++K  +R+  M+A EA
Sbjct: 121 MMHQPMGGATGQASDIEIQAREVLKLKEILNSIYHKHTGKTVEQIQKDTERNFYMTADEA 180

Query: 196 CDWGVVDKVL 205
            ++G++D V+
Sbjct: 181 KNYGIIDTVI 190


>gi|261415786|ref|YP_003249469.1| Endopeptidase Clp [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|261372242|gb|ACX74987.1| Endopeptidase Clp [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|302326653|gb|ADL25854.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 196

 Score =  232 bits (591), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 105/191 (54%), Positives = 146/191 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+E T RGER+YDIYSRLLKERI+F+   I D +A  + AQL+FLE ENP+K+I+L
Sbjct: 2   IIPTVIETTGRGERAYDIYSRLLKERIIFLGTPINDEVANNVMAQLIFLEYENPEKDITL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG+AIYDTMQ ++P I+T C+G  ASM ++LL+AG KG R+ALP++RI+L
Sbjct: 62  YINSPGGYVSAGLAIYDTMQHVRPNIATICIGSCASMAAVLLAAGTKGKRYALPHSRIML 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSG  +GQ++DI+  A++I++ K  L EI  K+ GK  +EV +  DRD  MS  EA  
Sbjct: 122 HQPSGAATGQSTDIQITAKEIIRTKDTLTEIVAKHTGKPVDEVREKTDRDFYMSPEEAKA 181

Query: 198 WGVVDKVLMSR 208
           +GV+D++ + R
Sbjct: 182 FGVIDEIFVPR 192


>gi|319891770|ref|YP_004148645.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317161466|gb|ADV05009.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 195

 Score =  231 bits (590), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 105/190 (55%), Positives = 148/190 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+E TNRGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL+A++ +K+I
Sbjct: 1   MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLQAQDAEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG AIYDT+Q IKP + T C+G AASMGS LL+AG KG RFALPNA +
Sbjct: 61  YLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I++ + RLN+I  +  G+  E++EK  DRD+ ++A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKHILRTRERLNKILSELTGQPIEKIEKDTDRDNFLTAQEA 180

Query: 196 CDWGVVDKVL 205
            ++G++D+V+
Sbjct: 181 KEYGLIDEVM 190


>gi|269120920|ref|YP_003309097.1| ATP-dependent Clp protease proteolytic subunit ClpP [Sebaldella
           termitidis ATCC 33386]
 gi|268614798|gb|ACZ09166.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sebaldella
           termitidis ATCC 33386]
          Length = 190

 Score =  231 bits (590), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 103/186 (55%), Positives = 149/186 (80%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P+V+E   RGERSYDIYSRLLK+RI+F+ G++ED+MA  I AQLLFL+A++ +K+I++YI
Sbjct: 4   PIVIENDGRGERSYDIYSRLLKDRIIFLGGEVEDNMANSIIAQLLFLDAQDSEKDITIYI 63

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGGV+T+G+AIYDTM+ I   +ST C+GQAASMG+LLL+AG KG R++LPN+RI++HQ
Sbjct: 64  NSPGGVITSGLAIYDTMRHINADVSTVCVGQAASMGALLLAAGTKGKRYSLPNSRIMIHQ 123

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQA+D+   A+++ +IK  +NEI  +  GK  +E+    +RD+ M+A EA ++G
Sbjct: 124 PLGGAQGQATDVLIQAREMERIKTLVNEILSEATGKDIKEIYSDTERDNFMNADEALEYG 183

Query: 200 VVDKVL 205
           ++DKV+
Sbjct: 184 LIDKVI 189


>gi|238854870|ref|ZP_04645200.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           jensenii 269-3]
 gi|256851455|ref|ZP_05556844.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           jensenii 27-2-CHN]
 gi|260660876|ref|ZP_05861791.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           jensenii 115-3-CHN]
 gi|260664157|ref|ZP_05865010.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           jensenii SJ-7A-US]
 gi|282931582|ref|ZP_06337075.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           jensenii 208-1]
 gi|282933455|ref|ZP_06338831.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           jensenii 208-1]
 gi|297206270|ref|ZP_06923665.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           jensenii JV-V16]
 gi|313472372|ref|ZP_07812864.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           jensenii 1153]
 gi|238832660|gb|EEQ24967.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           jensenii 269-3]
 gi|239529769|gb|EEQ68770.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           jensenii 1153]
 gi|256616517|gb|EEU21705.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           jensenii 27-2-CHN]
 gi|260548598|gb|EEX24573.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           jensenii 115-3-CHN]
 gi|260562043|gb|EEX28012.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           jensenii SJ-7A-US]
 gi|281302386|gb|EFA94612.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           jensenii 208-1]
 gi|281304193|gb|EFA96302.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           jensenii 208-1]
 gi|297149396|gb|EFH29694.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           jensenii JV-V16]
          Length = 193

 Score =  231 bits (590), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 104/188 (55%), Positives = 148/188 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQT RGER+YDIYSRLLK+RI+ ++G+I D MA  I AQLLFL+A++  K+ISL
Sbjct: 2   LVPTVIEQTARGERAYDIYSRLLKDRIIMLSGEINDQMANSIIAQLLFLDAQDNTKDISL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+T+G+AI DTM FIK  +ST  +G AASM S+LL++G KG RFALPN+ +L+
Sbjct: 62  YINSPGGVITSGLAIMDTMNFIKSDVSTIAIGMAASMASILLTSGTKGKRFALPNSTVLI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQ +DI+  A++I+K +++LNEI  +  G+  E++ K  +RD+ ++A EA D
Sbjct: 122 HQPLGGAQGQQTDIQIAAEEILKSRKKLNEILHETTGQPIEKILKDTERDNYLTAQEAKD 181

Query: 198 WGVVDKVL 205
           +G++D+++
Sbjct: 182 YGLIDEIM 189


>gi|310641963|ref|YP_003946721.1| ATP-dependent clp protease proteolytic subunit [Paenibacillus
           polymyxa SC2]
 gi|309246913|gb|ADO56480.1| ATP-dependent Clp protease proteolytic subunit [Paenibacillus
           polymyxa SC2]
          Length = 194

 Score =  231 bits (590), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 110/189 (58%), Positives = 141/189 (74%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP VVEQT +GERSYDIYSRLLK+RIVFV   I+D +A  I AQLLFL AE+P+K+I +Y
Sbjct: 5   VPYVVEQTAQGERSYDIYSRLLKDRIVFVGATIDDQLANSIIAQLLFLAAEDPEKDIYMY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  +AG AIYDTMQ+IKP + T C G AAS G++LL AG KG R ALPN+ I++H
Sbjct: 65  INSPGGSTSAGFAIYDTMQYIKPEVHTICTGFAASFGAILLLAGAKGKRSALPNSEIMIH 124

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQASDI   A+ I+  + +   I  +  G+++E+VEK +DRD  MSA EA ++
Sbjct: 125 QPHGGAQGQASDIAISAKRILWTREKATRITAERTGQSFEKVEKDMDRDFYMSAQEALEY 184

Query: 199 GVVDKVLMS 207
           GV+D+V+ S
Sbjct: 185 GVIDQVITS 193


>gi|162451419|ref|YP_001613786.1| endopeptidase Clp [Sorangium cellulosum 'So ce 56']
 gi|161162001|emb|CAN93306.1| Endopeptidase Clp [Sorangium cellulosum 'So ce 56']
          Length = 214

 Score =  231 bits (590), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 105/191 (54%), Positives = 151/191 (79%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V E T+RGER ++I+SRLLK+RIVF+  +I+D +A  + AQ LFLE+E+P+KEI +
Sbjct: 22  ILPTVTEVTHRGEREWNIFSRLLKDRIVFIGTEIDDFVANAVIAQFLFLESEDPEKEIQV 81

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G+A+YDTMQ+++ P+ST C+GQAASMG++LL AG KG RFALP+AR+++
Sbjct: 82  YINSPGGVVTSGLAMYDTMQYVRCPVSTMCIGQAASMGAVLLGAGRKGRRFALPHARMMI 141

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I KIK  L +I V   GK  +E+ K ++RD  +SA++A +
Sbjct: 142 HQPLGGARGQATDIEIQAREIKKIKETLIDILVDATGKNRDELAKDIERDFYLSATQAKE 201

Query: 198 WGVVDKVLMSR 208
           +G++D+V   R
Sbjct: 202 YGLIDEVFPKR 212


>gi|58337015|ref|YP_193600.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           acidophilus NCFM]
 gi|227903577|ref|ZP_04021382.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           acidophilus ATCC 4796]
 gi|67460152|sp|Q5FL55|CLPP_LACAC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|58254332|gb|AAV42569.1| ATP-dependent Clp protease P [Lactobacillus acidophilus NCFM]
 gi|227868464|gb|EEJ75885.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           acidophilus ATCC 4796]
          Length = 195

 Score =  231 bits (590), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 102/191 (53%), Positives = 151/191 (79%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQT RGER+YDIYSRLLK+RI+ ++G+I D MA  I AQLLFL+A++  K+ISL
Sbjct: 2   LVPTVIEQTARGERAYDIYSRLLKDRIIMLSGEINDQMANSIIAQLLFLDAQDNTKDISL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+T+G+AI DTM FIK  +ST  +G AASM S+LL++G KG RFALPN+ +L+
Sbjct: 62  YINSPGGVITSGLAIMDTMNFIKSDVSTIAIGMAASMASILLTSGTKGKRFALPNSTVLI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQ +DI+  A +I+K ++++NEI  +  G+  E+++K  +RD+ ++A EA +
Sbjct: 122 HQPLGGAQGQQTDIQIAANEILKSRKKINEILHETTGQPLEKIQKDTERDNYLTAEEAKE 181

Query: 198 WGVVDKVLMSR 208
           +G++D++++++
Sbjct: 182 YGLIDEIMVNK 192


>gi|42518794|ref|NP_964724.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           johnsonii NCC 533]
 gi|116629940|ref|YP_815112.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           gasseri ATCC 33323]
 gi|227889633|ref|ZP_04007438.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           johnsonii ATCC 33200]
 gi|238853240|ref|ZP_04643625.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           gasseri 202-4]
 gi|268319810|ref|YP_003293466.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           johnsonii FI9785]
 gi|282851462|ref|ZP_06260827.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           gasseri 224-1]
 gi|300361300|ref|ZP_07057477.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           gasseri JV-V03]
 gi|311110427|ref|ZP_07711824.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           gasseri MV-22]
 gi|67460349|sp|Q74K84|CLPP_LACJO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|122273122|sp|Q042E8|CLPP_LACGA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|41583080|gb|AAS08690.1| ATP-dependent clp protease proteolytic subunit [Lactobacillus
           johnsonii NCC 533]
 gi|116095522|gb|ABJ60674.1| ATP-dependent Clp protease proteolytic subunit ClpP [Lactobacillus
           gasseri ATCC 33323]
 gi|227849776|gb|EEJ59862.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           johnsonii ATCC 33200]
 gi|238834124|gb|EEQ26376.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           gasseri 202-4]
 gi|262398185|emb|CAX67199.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           johnsonii FI9785]
 gi|282557430|gb|EFB63027.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           gasseri 224-1]
 gi|300353919|gb|EFJ69790.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           gasseri JV-V03]
 gi|311065581|gb|EFQ45921.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           gasseri MV-22]
 gi|329667657|gb|AEB93605.1| ATP-dependent clp protease proteolytic subunit [Lactobacillus
           johnsonii DPC 6026]
          Length = 195

 Score =  231 bits (590), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 104/191 (54%), Positives = 150/191 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQT RGER+YDIYSRLLK+RI+ ++G+I D MA  I AQLLFL+A++  K+ISL
Sbjct: 2   LVPTVIEQTARGERAYDIYSRLLKDRIIMLSGEINDQMANSIIAQLLFLDAQDNTKDISL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+T+G+AI DTM FIK  +ST  +G AASM S+LL++G KG RFALPN+ +L+
Sbjct: 62  YINSPGGVITSGLAIMDTMNFIKSDVSTIAIGMAASMASILLTSGTKGKRFALPNSTVLI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQ +DI+  A +I+K +++LN+I  +  G+  +++ K  +RD+ +SA EA D
Sbjct: 122 HQPLGGAQGQQTDIQIAANEILKSRKKLNQILHETTGQPLDKILKDTERDNYLSAEEAKD 181

Query: 198 WGVVDKVLMSR 208
           +G++D++L+++
Sbjct: 182 YGLIDEILVNQ 192


>gi|34762747|ref|ZP_00143736.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|256846930|ref|ZP_05552384.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium
           sp. 3_1_36A2]
 gi|294784271|ref|ZP_06749566.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium
           sp. 3_1_27]
 gi|27887597|gb|EAA24677.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|256717728|gb|EEU31287.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium
           sp. 3_1_36A2]
 gi|294488137|gb|EFG35488.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium
           sp. 3_1_27]
          Length = 193

 Score =  231 bits (590), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 106/188 (56%), Positives = 144/188 (76%), Gaps = 2/188 (1%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P V++   + ER+YDIYSRLLK+RI+FV   I++ +A  I AQLL+LEAE+P+K+I +YI
Sbjct: 4   PTVIDNNGKSERAYDIYSRLLKDRIIFVGTAIDETVANSIIAQLLYLEAEDPEKDIIMYI 63

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VT GMAIYDTM +IKP + T C+GQAASMG+ LL+AG KG RFAL N+RI++HQ
Sbjct: 64  NSPGGSVTDGMAIYDTMNYIKPDVQTVCVGQAASMGAFLLAAGAKGKRFALENSRIMIHQ 123

Query: 140 P--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           P  SGG  GQA+DI  HA +++KIK RL E+  KN GKT E++ +  +RD+ +S+ EA +
Sbjct: 124 PLISGGLKGQATDISIHANELLKIKDRLAELLAKNTGKTKEQILRDTERDNYLSSEEAVN 183

Query: 198 WGVVDKVL 205
           +G++D V 
Sbjct: 184 YGLIDSVF 191


>gi|124013820|sp|Q2RZ59|CLPP2_SALRD RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
          Length = 233

 Score =  231 bits (590), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 109/189 (57%), Positives = 145/189 (76%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMVVEQT RGER+YDI+SRLLKERIVF+   I D +A L  AQLL+L +E+ +K I+
Sbjct: 20  GLVPMVVEQTTRGERAYDIFSRLLKERIVFIGTPINDQIANLTVAQLLYLASESSEKPIN 79

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGV+ +G+ +YDTMQ+I  P+ST C+G AASMGS+LL+AGE   R  LPN+R++
Sbjct: 80  LYINSPGGVIYSGLGVYDTMQYIGAPVSTICVGLAASMGSVLLAAGEDDSRACLPNSRVM 139

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQASDIE  A++I+ +K RL EI   + G+  +++E   DR++ MSA EA 
Sbjct: 140 IHQPMGGAEGQASDIEIQAEEIMWLKERLYEILALHTGQDIDQIEADADRNYWMSAEEAE 199

Query: 197 DWGVVDKVL 205
           ++G+VD VL
Sbjct: 200 EYGLVDNVL 208


>gi|19705312|ref|NP_602807.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
 gi|237742958|ref|ZP_04573439.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           4_1_13]
 gi|254302272|ref|ZP_04969630.1| S14 family endopeptidase ClpP [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|256028615|ref|ZP_05442449.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           D11]
 gi|289766533|ref|ZP_06525911.1| endopeptidase Clp [Fusobacterium sp. D11]
 gi|296328560|ref|ZP_06871079.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|22653693|sp|Q8RHJ8|CLPP_FUSNN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|19713281|gb|AAL94106.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
 gi|148322464|gb|EDK87714.1| S14 family endopeptidase ClpP [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|229430606|gb|EEO40818.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           4_1_13]
 gi|289718088|gb|EFD82100.1| endopeptidase Clp [Fusobacterium sp. D11]
 gi|296154369|gb|EFG95168.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 193

 Score =  231 bits (590), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 106/188 (56%), Positives = 144/188 (76%), Gaps = 2/188 (1%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P V++   + ER+YDIYSRLLK+RI+FV   I++ +A  I AQLL+LEAE+P+K+I +YI
Sbjct: 4   PTVIDNNGKSERAYDIYSRLLKDRIIFVGTAIDETVANSIIAQLLYLEAEDPEKDIIMYI 63

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VT GMAIYDTM +IKP + T C+GQAASMG+ LL+AG KG RFAL N+RI++HQ
Sbjct: 64  NSPGGSVTDGMAIYDTMNYIKPDVQTVCVGQAASMGAFLLAAGAKGKRFALENSRIMIHQ 123

Query: 140 P--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           P  SGG  GQA+DI  HA +++KIK RL E+  KN GKT E++ +  +RD+ +S+ EA +
Sbjct: 124 PLISGGLKGQATDISIHANELLKIKDRLAELLAKNTGKTKEQILRDTERDNYLSSEEAVN 183

Query: 198 WGVVDKVL 205
           +G++D V 
Sbjct: 184 YGLIDSVF 191


>gi|227877204|ref|ZP_03995278.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           crispatus JV-V01]
 gi|227893204|ref|ZP_04011009.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           ultunensis DSM 16047]
 gi|256842758|ref|ZP_05548246.1| Clp protease [Lactobacillus crispatus 125-2-CHN]
 gi|256848932|ref|ZP_05554366.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           crispatus MV-1A-US]
 gi|262045725|ref|ZP_06018689.1| Clp protease [Lactobacillus crispatus MV-3A-US]
 gi|293380203|ref|ZP_06626285.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           crispatus 214-1]
 gi|295692558|ref|YP_003601168.1| ATP-dependent clp protease proteolytic subunit [Lactobacillus
           crispatus ST1]
 gi|312977722|ref|ZP_07789469.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           crispatus CTV-05]
 gi|227863258|gb|EEJ70703.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           crispatus JV-V01]
 gi|227864973|gb|EEJ72394.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           ultunensis DSM 16047]
 gi|256614178|gb|EEU19379.1| Clp protease [Lactobacillus crispatus 125-2-CHN]
 gi|256714471|gb|EEU29458.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           crispatus MV-1A-US]
 gi|260573684|gb|EEX30240.1| Clp protease [Lactobacillus crispatus MV-3A-US]
 gi|290923247|gb|EFE00168.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           crispatus 214-1]
 gi|295030664|emb|CBL50143.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           crispatus ST1]
 gi|310895461|gb|EFQ44528.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           crispatus CTV-05]
 gi|323466927|gb|ADX70614.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           helveticus H10]
          Length = 194

 Score =  231 bits (590), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 102/191 (53%), Positives = 151/191 (79%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQT RGER+YDIYSRLLK+RI+ ++G+I D MA  I AQLLFL+A++  K+ISL
Sbjct: 2   LVPTVIEQTARGERAYDIYSRLLKDRIIMLSGEINDQMANSIIAQLLFLDAQDNTKDISL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+T+G+AI DTM FIK  +ST  +G AASM S+LL++G KG RFALPN+ +L+
Sbjct: 62  YINSPGGVITSGLAIMDTMNFIKSDVSTIAIGMAASMASILLTSGTKGKRFALPNSTVLI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQ +DI+  A +I+K ++++NEI  +  G+  E+++K  +RD+ ++A EA +
Sbjct: 122 HQPLGGAQGQQTDIQIAANEILKSRKKINEILHETTGQPLEKIQKDTERDNYLTAEEAKE 181

Query: 198 WGVVDKVLMSR 208
           +G++D++++++
Sbjct: 182 YGLIDEIMVNK 192


>gi|239636619|ref|ZP_04677621.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus warneri L37603]
 gi|239597974|gb|EEQ80469.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus warneri L37603]
          Length = 196

 Score =  231 bits (590), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 104/190 (54%), Positives = 147/190 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+E TNRGER+YDIYSRLLK+RI+ +  QI+D++A  I +QLLFL+A++ +K+I
Sbjct: 1   MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG AIYDT+Q IKP + T C+G AASMGS LL+AG KG R+ALPNA +
Sbjct: 61  YLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRYALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A  I+K + +LN I  +  G++ E++++  DRD+ ++A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAANHILKTREKLNRILAERTGQSIEKIQQDTDRDNFLTAEEA 180

Query: 196 CDWGVVDKVL 205
             +G+VD+V+
Sbjct: 181 KAYGLVDEVM 190


>gi|78186273|ref|YP_374316.1| peptidase S14, ClpP [Chlorobium luteolum DSM 273]
 gi|115311788|sp|Q3B5V8|CLPP_PELLD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|78166175|gb|ABB23273.1| ATP-dependent Clp protease proteolytic subunit ClpP [Chlorobium
           luteolum DSM 273]
          Length = 225

 Score =  231 bits (590), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 105/197 (53%), Positives = 152/197 (77%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMV+E + RGER++DI+SRLL+ERI+F+   I++H+A LI AQL+FLE+E+P+++I +
Sbjct: 28  LVPMVIETSGRGERAFDIFSRLLRERIIFLGSGIDEHVAGLIMAQLIFLESEDPERDIYI 87

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG V+AG+ IYDTMQ+I+P +ST C+G AASMG+ LL++G KG R +LP++RI++
Sbjct: 88  YVNSPGGSVSAGLGIYDTMQYIRPDVSTVCVGMAASMGAFLLASGAKGKRASLPHSRIMI 147

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQ SDI   A++I KI+R L EI   + GK  ++V +  +RD  M+A EA D
Sbjct: 148 HQPSGGAQGQESDIIIQAREIEKIRRLLEEILASHTGKDVQQVREDSERDRWMNAEEALD 207

Query: 198 WGVVDKVLMSRIDIEEK 214
           +G++D+V   R   E+K
Sbjct: 208 YGIIDQVFAKRPAPEKK 224


>gi|268317954|ref|YP_003291673.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhodothermus
           marinus DSM 4252]
 gi|262335488|gb|ACY49285.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhodothermus
           marinus DSM 4252]
          Length = 252

 Score =  231 bits (589), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 105/193 (54%), Positives = 150/193 (77%), Gaps = 1/193 (0%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVP+V+EQT RGER+YDI+SRLLKERIV +   I D +A L+ AQLL+L +E+ +++I+
Sbjct: 35  ALVPIVIEQTTRGERAYDIFSRLLKERIVIIGTPINDQIANLVVAQLLWLASEDSERDIN 94

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG + +G+A+YDTMQ++ PP++T C+G AASMG++LL+AG KG R ALPN+RI+
Sbjct: 95  IYINSPGGSIDSGLAVYDTMQYVAPPVATICVGLAASMGAVLLAAGVKGKRAALPNSRIM 154

Query: 137 LHQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP   G  GQA+DIE HA++I+K++ RLNEI   + G+  E + + +DRD  +SA EA
Sbjct: 155 IHQPWMSGVQGQATDIEIHAREILKMRERLNEILAYHTGQPKERIAQDVDRDFWLSAQEA 214

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD VL  R
Sbjct: 215 KEYGLVDNVLTPR 227


>gi|161507214|ref|YP_001577168.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           helveticus DPC 4571]
 gi|172048207|sp|A8YUD9|CLPP_LACH4 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|160348203|gb|ABX26877.1| ATP-dependent Clp protease P [Lactobacillus helveticus DPC 4571]
          Length = 194

 Score =  231 bits (589), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 102/191 (53%), Positives = 150/191 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQT RGER+YDIYSRLLK+RI+ ++G+I D MA  I AQLLFL+A++  K+ISL
Sbjct: 2   LVPTVIEQTARGERAYDIYSRLLKDRIIMLSGEINDQMANSIIAQLLFLDAQDNTKDISL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+T+G+AI DTM FIK  +ST  +G AASM S+LL++G KG RFALPN+ +L+
Sbjct: 62  YINSPGGVITSGLAIMDTMNFIKSDVSTIAIGMAASMASILLTSGTKGKRFALPNSTVLI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQ +DI+  A +I+K ++++NEI  +  G+  E+++K  +RD+ ++A EA +
Sbjct: 122 HQPLGGAQGQQTDIQIAANEILKSRKKINEILHETTGQPLEKIQKDTERDNYLTAEEAKE 181

Query: 198 WGVVDKVLMSR 208
           +G++D+++ ++
Sbjct: 182 YGLIDEIMANK 192


>gi|119177332|ref|XP_001240455.1| ATP-dependent Clp protease proteolytic subunit [Coccidioides
           immitis RS]
          Length = 237

 Score =  231 bits (589), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 107/198 (54%), Positives = 152/198 (76%), Gaps = 2/198 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
            P V E       +YDI+SRLLKERIV + G++++ ++  I AQLLFLEA+NP+K+ISLY
Sbjct: 37  TPFVTETLGGAWHTYDIFSRLLKERIVCLNGEVDETVSASIVAQLLFLEADNPEKQISLY 96

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDTM +I+ P+ST C+GQAASMGSLLL  GE G RF LP++ +++H
Sbjct: 97  INSPGGSVTAGLAIYDTMTYIQSPVSTICIGQAASMGSLLLCGGEPGKRFCLPHSSVMVH 156

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK--TYEEVEKTLDRDHIMSASEAC 196
           QPSGG+ GQA+DI  HA++I++++++LNEIY ++  K  + EE+EK ++RD+ M A EA 
Sbjct: 157 QPSGGYFGQATDIAIHAKEILRVRKQLNEIYRRHLTKDMSLEEIEKLMERDYFMGAKEAL 216

Query: 197 DWGVVDKVLMSRIDIEEK 214
           D G+VD ++  R+  +E+
Sbjct: 217 DMGIVDGIMDRRMKPKEE 234


>gi|328952152|ref|YP_004369486.1| ATP-dependent Clp protease proteolytic subunit [Desulfobacca
           acetoxidans DSM 11109]
 gi|328452476|gb|AEB08305.1| ATP-dependent Clp protease proteolytic subunit [Desulfobacca
           acetoxidans DSM 11109]
          Length = 199

 Score =  231 bits (588), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 110/194 (56%), Positives = 155/194 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P+VVEQ++RGER+YDIYSRLL++RI+F+   I D ++ LI AQLLFLE+E+P K+I
Sbjct: 1   MPLIPIVVEQSSRGERAYDIYSRLLRDRIIFLGSAINDEVSNLIVAQLLFLESEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG+VTAG+AIYDTMQ+IKPP+ST CMG  ASM +LLL+AG KG RFALP+ARI
Sbjct: 61  HFYINSPGGLVTAGLAIYDTMQYIKPPVSTLCMGLGASMAALLLAAGAKGKRFALPHARI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQP GGF GQA+D+E  A++I++++  LNE+  ++ G+  E +    +RD  MS  +A
Sbjct: 121 LIHQPLGGFQGQATDVEIQAREILRLREELNEVLARHTGQPRERINTDTERDFYMSGDQA 180

Query: 196 CDWGVVDKVLMSRI 209
            ++G+VD+V+ +R+
Sbjct: 181 KEYGLVDEVITTRM 194


>gi|332179133|gb|AEE14822.1| ATP-dependent Clp protease proteolytic subunit [Thermodesulfobium
           narugense DSM 14796]
          Length = 199

 Score =  231 bits (588), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 100/191 (52%), Positives = 147/191 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P V E+T+ GER YDIYS+LL +RI+F+   I + +A L+ AQ+LFLEA++P ++I L
Sbjct: 8   LIPTVTERTSHGERVYDIYSKLLNDRIIFLGTAINEDVANLVVAQMLFLEADDPNRDIYL 67

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG+VTAG+AIYDTMQ++K P++T C GQAASM +++L+AGE+G R+ LPN+R+L+
Sbjct: 68  YINSPGGIVTAGLAIYDTMQYVKSPVNTICFGQAASMAAVILAAGERGKRYCLPNSRVLI 127

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DI   A++I+K+K  LN+I  K+ GK   +++   +RD  M A +A +
Sbjct: 128 HQPLGGAEGQATDIAIQAKEILKVKDTLNQILAKHTGKNITKIKNDTERDFYMDAKQAKE 187

Query: 198 WGVVDKVLMSR 208
           +G+VD++L  R
Sbjct: 188 YGIVDEILEKR 198


>gi|253581496|ref|ZP_04858721.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           varium ATCC 27725]
 gi|251836566|gb|EES65101.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           varium ATCC 27725]
          Length = 191

 Score =  231 bits (588), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 107/186 (57%), Positives = 145/186 (77%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P VVE T R ER+YDIYSRLLK+RI+F+  +I+D++A  I AQLLFLEAE+P K+I +YI
Sbjct: 4   PTVVESTGRSERAYDIYSRLLKDRIIFLGTEIDDNVANAIVAQLLFLEAEDPDKDIIMYI 63

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGGVVTAGMAIYDTM +IKP + T C+GQAASMG+LLL AG +G R+AL ++RI++HQ
Sbjct: 64  NSPGGVVTAGMAIYDTMNYIKPDVQTVCIGQAASMGALLLGAGARGKRYALEHSRIMIHQ 123

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQA+DIE  A++I+++K  L++I     GK+  E+    +RD+ MSA EA ++G
Sbjct: 124 PLGGARGQATDIEIQAKEILRMKEMLSQILADCTGKSLSEIITDTERDNYMSAEEAKNYG 183

Query: 200 VVDKVL 205
           ++D+V 
Sbjct: 184 LIDQVF 189


>gi|300865787|ref|ZP_07110541.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oscillatoria
           sp. PCC 6506]
 gi|300336200|emb|CBN55696.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oscillatoria
           sp. PCC 6506]
          Length = 203

 Score =  231 bits (588), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 107/191 (56%), Positives = 145/191 (75%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+EQ+ RGER++DIYSRLL++RIVF+  Q+   +A LI AQLLFL+AE+P+K+I L
Sbjct: 1   MIPTVIEQSGRGERAFDIYSRLLRDRIVFLGQQVTSDLANLIVAQLLFLDAEDPEKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM I+DTM  I+P +ST C+G AASMG+ LLSAG KG R  LP++RI++
Sbjct: 61  YINSPGGSVTAGMGIFDTMNHIRPEVSTICLGLAASMGAFLLSAGAKGKRMTLPHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+  KRRLNE    + G+    +E+  +RD  MSA+EA +
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYHKRRLNEHLAAHTGQPLSRIEEDTERDFFMSAAEATE 180

Query: 198 WGVVDKVLMSR 208
           +G+VD V+  R
Sbjct: 181 YGLVDLVIDRR 191


>gi|228474429|ref|ZP_04059164.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus hominis SK119]
 gi|314936932|ref|ZP_07844279.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus hominis subsp. hominis C80]
 gi|228271788|gb|EEK13135.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus hominis SK119]
 gi|313655551|gb|EFS19296.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus hominis subsp. hominis C80]
          Length = 195

 Score =  231 bits (588), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 104/190 (54%), Positives = 144/190 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+E TNRGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL+A++ +K+I
Sbjct: 1   MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLQAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG AIYDT+Q IKP + T C+G AASMGS LL+AG KG RFALPNA +
Sbjct: 61  YLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGTKGKRFALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A  I+K + +LN I  +  G+  E ++K  DRD+ ++A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAANHILKTREKLNRILAERTGQNIETIQKDTDRDNFLTADEA 180

Query: 196 CDWGVVDKVL 205
            ++G++D V+
Sbjct: 181 KEYGLIDHVM 190


>gi|304405398|ref|ZP_07387057.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
           curdlanolyticus YK9]
 gi|304345437|gb|EFM11272.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
           curdlanolyticus YK9]
          Length = 194

 Score =  231 bits (588), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 106/188 (56%), Positives = 139/188 (73%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP VVEQTNRGERSYDIYSRLLK+RIVF+   I+D +A +I AQLLFL AE+P K+I  
Sbjct: 4   IVPYVVEQTNRGERSYDIYSRLLKDRIVFLGSAIDDQVANVITAQLLFLAAEDPDKDIHF 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  +AG AI DTM +IKP + T C G AAS  ++LL +G KG R+ALPN+ +++
Sbjct: 64  YINSPGGSTSAGFAILDTMHYIKPDVQTICAGMAASFAAILLLSGTKGKRYALPNSEVMI 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A+ I+ I+ +LN I V+  G+  E VE+ +DRD  MSA EA  
Sbjct: 124 HQPHGGAQGQASDIAITAKRIIGIREKLNRITVERTGQPLERVEQDMDRDTYMSAEEALQ 183

Query: 198 WGVVDKVL 205
           +G++D+++
Sbjct: 184 YGIIDQII 191


>gi|331701681|ref|YP_004398640.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           buchneri NRRL B-30929]
 gi|329129024|gb|AEB73577.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           buchneri NRRL B-30929]
          Length = 197

 Score =  231 bits (588), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 103/192 (53%), Positives = 148/192 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQ+  GER+YDIYSRLLK+RI+ ++G IED MA  I AQLLFL+A++ +K+I
Sbjct: 1   MNLVPTVIEQSAGGERAYDIYSRLLKDRIIMLSGPIEDDMANAIIAQLLFLDAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+T+GMAIYDTM F+K  + T  MG AASM S+L S+G KG RFALP+A++
Sbjct: 61  YLYINSPGGVITSGMAIYDTMNFVKSDVQTIVMGMAASMASVLASSGAKGKRFALPHAQV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQPSGG  GQ ++IE  A++I+K ++ +N +  +N G+  E++ K  +RD+ ++A EA
Sbjct: 121 LIHQPSGGAQGQQTEIEIAAEEILKARKMINNLLAENSGQPIEKINKDTERDNYLTAQEA 180

Query: 196 CDWGVVDKVLMS 207
            D+G++D ++ S
Sbjct: 181 VDYGLLDGIMTS 192


>gi|303316037|ref|XP_003068023.1| ATP-dependent Clp protease proteolytic subunit, putative
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240107699|gb|EER25878.1| ATP-dependent Clp protease proteolytic subunit, putative
           [Coccidioides posadasii C735 delta SOWgp]
 gi|320032384|gb|EFW14337.1| ATP-dependent Clp protease [Coccidioides posadasii str. Silveira]
          Length = 237

 Score =  231 bits (588), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 107/198 (54%), Positives = 152/198 (76%), Gaps = 2/198 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
            P V E       +YDI+SRLLKERIV + G++++ ++  I AQLLFLEA+NP+K+ISLY
Sbjct: 37  TPFVTETLGGAWHTYDIFSRLLKERIVCLNGEVDETVSASIVAQLLFLEADNPEKQISLY 96

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDTM +I+ P+ST C+GQAASMGSLLL  GE G RF LP++ +++H
Sbjct: 97  INSPGGSVTAGLAIYDTMTYIQSPVSTICVGQAASMGSLLLCGGEPGKRFCLPHSSVMVH 156

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK--TYEEVEKTLDRDHIMSASEAC 196
           QPSGG+ GQA+DI  HA++I++++++LNEIY ++  K  + EE+EK ++RD+ M A EA 
Sbjct: 157 QPSGGYFGQATDIAIHAKEILRVRKQLNEIYRRHLTKDMSLEEIEKLMERDYFMGAKEAL 216

Query: 197 DWGVVDKVLMSRIDIEEK 214
           D G+VD ++  R+  +E+
Sbjct: 217 DMGIVDGIMDRRMKPKEE 234


>gi|294508705|ref|YP_003572764.1| ATP-dependent Clp protease proteolytic subunit [Salinibacter ruber
           M8]
 gi|294345034|emb|CBH25812.1| ATP-dependent Clp protease proteolytic subunit [Salinibacter ruber
           M8]
          Length = 273

 Score =  230 bits (587), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 109/189 (57%), Positives = 145/189 (76%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMVVEQT RGER+YDI+SRLLKERIVF+   I D +A L  AQLL+L +E+ +K I+
Sbjct: 60  GLVPMVVEQTTRGERAYDIFSRLLKERIVFIGTPINDQIANLTVAQLLYLASESSEKPIN 119

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGV+ +G+ +YDTMQ+I  P+ST C+G AASMGS+LL+AGE   R  LPN+R++
Sbjct: 120 LYINSPGGVIYSGLGVYDTMQYIGAPVSTICVGLAASMGSVLLAAGEDDSRACLPNSRVM 179

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQASDIE  A++I+ +K RL EI   + G+  +++E   DR++ MSA EA 
Sbjct: 180 IHQPMGGAEGQASDIEIQAEEIMWLKERLYEILALHTGQDIDQIEADADRNYWMSAEEAE 239

Query: 197 DWGVVDKVL 205
           ++G+VD VL
Sbjct: 240 EYGLVDNVL 248


>gi|163789795|ref|ZP_02184232.1| ATP-dependent Clp protease proteolytic subunit [Carnobacterium sp.
           AT7]
 gi|159875017|gb|EDP69084.1| ATP-dependent Clp protease proteolytic subunit [Carnobacterium sp.
           AT7]
          Length = 197

 Score =  230 bits (587), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 102/190 (53%), Positives = 148/190 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQ++RGER+YDIYSRLLK+RI+ ++G ++D +A  + AQLLFL+A++ +K+I
Sbjct: 1   MNLIPTVIEQSSRGERAYDIYSRLLKDRIIMLSGPVDDDLANAVIAQLLFLDAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG VTAG+AI+DTM FIK  + T  MG AASMGS LL+AG KG R+ALPNA I
Sbjct: 61  YIYINSPGGSVTAGLAIFDTMNFIKADVQTIAMGMAASMGSFLLTAGTKGKRYALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++IE  A+ I+K + RLN+I  +  G+  E +++  DRD+ MSA +A
Sbjct: 121 MIHQPSGGSQGQATEIEIAARHILKTRERLNKILSERTGQPIEVIQRDTDRDNYMSAEDA 180

Query: 196 CDWGVVDKVL 205
             +G++D+++
Sbjct: 181 KAYGLIDEIM 190


>gi|170592242|ref|XP_001900878.1| Probable ClpP-like protease [Brugia malayi]
 gi|158591745|gb|EDP30349.1| Probable ClpP-like protease, putative [Brugia malayi]
          Length = 218

 Score =  230 bits (587), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 111/193 (57%), Positives = 144/193 (74%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +PMVV+Q  R ER YDIYSRLLK+RIV V   I D +A  I AQLLFL+ E+ +  I++Y
Sbjct: 26  IPMVVDQDGRIERVYDIYSRLLKDRIVCVMTSINDQVAASIIAQLLFLQGESAKSTINMY 85

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           I  PGG VTAG+ IYDTMQ+I  P++T+C+GQAASMGSLLLSAG KGMR +LPNARI++H
Sbjct: 86  IMCPGGSVTAGLGIYDTMQYISAPVATWCIGQAASMGSLLLSAGAKGMRTSLPNARIMVH 145

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  GQASDI   A++I ++K RLN+IY  + G+  E +E+ LDRD  MS  EA  +
Sbjct: 146 QPSGGAEGQASDILIRAEEIGRLKTRLNKIYAVHTGQDIETIEEVLDRDRYMSPEEAKQF 205

Query: 199 GVVDKVLMSRIDI 211
           G++D++  S  D+
Sbjct: 206 GIIDQIETSAFDL 218


>gi|83815964|ref|YP_446772.1| ATP-dependent Clp protease proteolytic subunit [Salinibacter ruber
           DSM 13855]
 gi|83757358|gb|ABC45471.1| ATP-dependent Clp protease proteolytic subunit [Salinibacter ruber
           DSM 13855]
          Length = 272

 Score =  230 bits (587), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 109/189 (57%), Positives = 145/189 (76%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMVVEQT RGER+YDI+SRLLKERIVF+   I D +A L  AQLL+L +E+ +K I+
Sbjct: 59  GLVPMVVEQTTRGERAYDIFSRLLKERIVFIGTPINDQIANLTVAQLLYLASESSEKPIN 118

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGV+ +G+ +YDTMQ+I  P+ST C+G AASMGS+LL+AGE   R  LPN+R++
Sbjct: 119 LYINSPGGVIYSGLGVYDTMQYIGAPVSTICVGLAASMGSVLLAAGEDDSRACLPNSRVM 178

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQASDIE  A++I+ +K RL EI   + G+  +++E   DR++ MSA EA 
Sbjct: 179 IHQPMGGAEGQASDIEIQAEEIMWLKERLYEILALHTGQDIDQIEADADRNYWMSAEEAE 238

Query: 197 DWGVVDKVL 205
           ++G+VD VL
Sbjct: 239 EYGLVDNVL 247


>gi|241895065|ref|ZP_04782361.1| ATP-dependent Clp protease proteolytic subunit [Weissella
           paramesenteroides ATCC 33313]
 gi|241871783|gb|EER75534.1| ATP-dependent Clp protease proteolytic subunit [Weissella
           paramesenteroides ATCC 33313]
          Length = 197

 Score =  230 bits (587), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 104/192 (54%), Positives = 144/192 (75%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+EQ++ GERSYDI+SRLL +RI+ V G+IE  MAT I AQLLFL+A++P K+I +Y
Sbjct: 4   IPYVIEQSSHGERSYDIFSRLLIDRIIMVNGEIESQMATAIIAQLLFLDAQDPDKDIYMY 63

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG V AGMAIYDTM FI   + T  +G AASM S+L S+G KG RF LPN++ ++H
Sbjct: 64  INSPGGEVNAGMAIYDTMNFISADVQTITIGLAASMASVLASSGAKGKRFILPNSQFMIH 123

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  GQ ++I   A++I+K +++LN+I   N GK +EEVEK  +RDH + A E+ ++
Sbjct: 124 QPSGGAQGQQTEIAIAAEEILKTRKKLNQILADNTGKPFEEVEKDTERDHWLDAEESLEY 183

Query: 199 GVVDKVLMSRID 210
           G++DK++ S  D
Sbjct: 184 GLIDKIMTSAKD 195


>gi|113474441|ref|YP_720502.1| ATP-dependent Clp protease proteolytic subunit ClpP [Trichodesmium
           erythraeum IMS101]
 gi|110165489|gb|ABG50029.1| ATP-dependent Clp protease proteolytic subunit ClpP [Trichodesmium
           erythraeum IMS101]
          Length = 231

 Score =  230 bits (587), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 104/188 (55%), Positives = 148/188 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VPMVVEQ+  GER++D+YSRLL+ERI+F+  Q+++++A  I AQ+LFL+AE+P+K+I L
Sbjct: 28  IVPMVVEQSGMGERAFDLYSRLLRERIIFLGTQVDENLANTITAQMLFLDAEDPEKDIQL 87

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGMAIYDTMQ ++P + T C G AASMG+ LLS G KG R +LP++RI++
Sbjct: 88  YINSPGGSVTAGMAIYDTMQQVRPDVVTICYGLAASMGAFLLSGGAKGKRMSLPSSRIMI 147

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA DIE  A++I+  KR+LNE+  ++ G+  E++E   +RD  MSA EA +
Sbjct: 148 HQPLGGAQGQAVDIEIQAKEILYHKRKLNELLAEHTGQPLEKIEVDTERDFFMSAEEAKN 207

Query: 198 WGVVDKVL 205
           +G++D+V+
Sbjct: 208 YGLIDQVI 215


>gi|296807623|ref|XP_002844228.1| ATP-dependent Clp protease proteolytic subunit [Arthroderma otae
           CBS 113480]
 gi|238843711|gb|EEQ33373.1| ATP-dependent Clp protease proteolytic subunit [Arthroderma otae
           CBS 113480]
          Length = 238

 Score =  230 bits (587), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 109/199 (54%), Positives = 151/199 (75%), Gaps = 3/199 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
            P V E    G  +YDI+SRLLKERIV + G++++ ++  I AQLLFLEA+NP+K I LY
Sbjct: 37  TPFVTETVGGGWHTYDIFSRLLKERIVCLNGEVDESLSAAIVAQLLFLEADNPEKPIQLY 96

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDTM +I+ P+ST C+GQAASMGSLLL  GE G R+ LP++ I++H
Sbjct: 97  INSPGGSVTAGLAIYDTMTYIQSPVSTICVGQAASMGSLLLCGGEAGKRYCLPHSSIMIH 156

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKN-CGK--TYEEVEKTLDRDHIMSASEA 195
           QPSGG+ GQA+DI  HA++I++++ +LN+IY ++  GK  T EE+EK ++RD+ M A EA
Sbjct: 157 QPSGGYFGQATDIAIHAKEILRVRHQLNQIYKRHLTGKEMTLEEIEKLMERDYFMGAKEA 216

Query: 196 CDWGVVDKVLMSRIDIEEK 214
            + G+VD +L  RI  +E+
Sbjct: 217 LEMGIVDSILDRRIPPKEE 235


>gi|172039352|ref|YP_001805853.1| ATP-dependent Clp protease proteolytic subunit [Cyanothece sp. ATCC
           51142]
 gi|171700806|gb|ACB53787.1| ATP-dependent Clp protease, proteolytic subunit [Cyanothece sp.
           ATCC 51142]
          Length = 229

 Score =  230 bits (587), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 109/198 (55%), Positives = 150/198 (75%), Gaps = 1/198 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VPMVVEQ+  GER++DIYSRLL+ERIVF+   ++D +A  I AQLLFL+AE+P+K+I L
Sbjct: 26  VVPMVVEQSGVGERAFDIYSRLLRERIVFLGTPVDDQVADSIVAQLLFLDAEDPEKDIQL 85

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+AIYDTMQ I+P + T C G AASMG+ LLS G KG R ALP++RI++
Sbjct: 86  YINSPGGSVYAGLAIYDTMQQIRPDVVTICFGLAASMGAFLLSGGAKGKRMALPSSRIMI 145

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA +IE  A++I+ IK+RLN++  ++ G+  E +    +RD  MSA EA D
Sbjct: 146 HQPLGGAQGQAVEIEIQAKEILYIKKRLNDMLAEHTGQPLETIAADTERDFFMSAQEAVD 205

Query: 198 WGVVDKVLMSRIDIEEKS 215
           +G++D+V+ SR D+ + +
Sbjct: 206 YGLIDQVI-SRPDLSDPT 222


>gi|291542673|emb|CBL15783.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ruminococcus
           bromii L2-63]
          Length = 193

 Score =  230 bits (587), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 103/193 (53%), Positives = 148/193 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQ++RGERS+DIYSRLL++RIV +  ++    A+++ AQLL+LE+++P K+I
Sbjct: 1   MALVPYVIEQSSRGERSFDIYSRLLEDRIVMLNEEVNSASASVVVAQLLYLESKDPTKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG VT G AI+DTM +IK  +ST CMG AASMG+ LL+AG KG R ALPN+ I
Sbjct: 61  SLYINSPGGSVTDGFAIFDTMNYIKCDVSTICMGMAASMGAFLLAAGAKGKRLALPNSDI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+D+E H + I+ +K+RLN+I   N G+  + + K  +RD+ M+A +A
Sbjct: 121 MIHQPSGGAQGQATDMEIHTRHILDMKKRLNQILADNTGQPIDVIAKDTNRDNFMTAQQA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++DKV+  R
Sbjct: 181 LEYGLIDKVIEKR 193


>gi|315037919|ref|YP_004031487.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           amylovorus GRL 1112]
 gi|325956392|ref|YP_004291804.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           acidophilus 30SC]
 gi|312276052|gb|ADQ58692.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           amylovorus GRL 1112]
 gi|325332957|gb|ADZ06865.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           acidophilus 30SC]
 gi|327183211|gb|AEA31658.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           amylovorus GRL 1118]
          Length = 194

 Score =  230 bits (587), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 101/191 (52%), Positives = 151/191 (79%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQT RGER+YDIYSRLLK+RI+ ++G+I D MA  I AQLLFL+A++  K+ISL
Sbjct: 2   LVPTVIEQTARGERAYDIYSRLLKDRIIMLSGEINDQMANSIIAQLLFLDAQDNTKDISL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+T+G+AI DTM FIK  +ST  +G AASM S+LL++G KG RFALPN+ +L+
Sbjct: 62  YINSPGGVITSGLAIMDTMNFIKSDVSTIAIGMAASMASILLTSGTKGKRFALPNSTVLI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQ +DI+  A +I+K ++++NEI  +  G+  ++++K  +RD+ ++A EA +
Sbjct: 122 HQPLGGAQGQQTDIQIAANEILKSRKKINEILHETTGQPLDKIQKDTERDNYLTAEEAKE 181

Query: 198 WGVVDKVLMSR 208
           +G++D++++++
Sbjct: 182 YGLIDEIMVNK 192


>gi|237743260|ref|ZP_04573741.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           7_1]
 gi|260495117|ref|ZP_05815246.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium
           sp. 3_1_33]
 gi|229433039|gb|EEO43251.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           7_1]
 gi|260197560|gb|EEW95078.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium
           sp. 3_1_33]
          Length = 193

 Score =  230 bits (586), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 105/188 (55%), Positives = 144/188 (76%), Gaps = 2/188 (1%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P V++   + ER+YDIYSRLLK+RI+FV   I++ +A  I AQLL+LEAE+P+K+I +YI
Sbjct: 4   PTVIDNNGKSERAYDIYSRLLKDRIIFVGTAIDETVANSIIAQLLYLEAEDPEKDIIMYI 63

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VT GMAIYDTM +IKP + T C+GQAASMG+ LL+AG KG RFAL N+RI++HQ
Sbjct: 64  NSPGGSVTDGMAIYDTMNYIKPDVQTVCVGQAASMGAFLLAAGAKGKRFALENSRIMIHQ 123

Query: 140 P--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           P  SGG  GQA+DI  HA +++KIK +L E+  KN GKT E++ +  +RD+ +S+ EA +
Sbjct: 124 PLISGGLKGQATDISIHANELLKIKDKLAELLAKNTGKTKEQILRDTERDNYLSSEEAVN 183

Query: 198 WGVVDKVL 205
           +G++D V 
Sbjct: 184 YGLIDSVF 191


>gi|300866516|ref|ZP_07111206.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oscillatoria
           sp. PCC 6506]
 gi|300335473|emb|CBN56366.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oscillatoria
           sp. PCC 6506]
          Length = 229

 Score =  230 bits (586), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 106/191 (55%), Positives = 147/191 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VPMV+EQ+  GER++DIYSRLL+ERIVF+   ++D +A  I AQLLFL+AE+P+K+I L
Sbjct: 26  VVPMVLEQSGMGERAFDIYSRLLRERIVFLGTPVDDQVADSIVAQLLFLDAEDPEKDIQL 85

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGMAIYDTMQ ++P + T C G AASMG+ L++AG  G R +LP++RI++
Sbjct: 86  YINSPGGSVTAGMAIYDTMQQVRPDVVTICYGLAASMGAFLMAAGAAGKRMSLPSSRIMI 145

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA DIE  A++I+  KR+LNE+   + G+  E +E   +RD  MSA+EA D
Sbjct: 146 HQPLGGAQGQAVDIEIQAKEILYHKRKLNELLAHHTGQPLERIEADTERDFFMSAAEAKD 205

Query: 198 WGVVDKVLMSR 208
           +G+VD+V++ +
Sbjct: 206 YGLVDQVILKQ 216


>gi|15639498|ref|NP_218948.1| ATP-dependent Clp protease proteolytic subunit [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189025737|ref|YP_001933509.1| ATP-dependent Clp protease proteolytic subunit [Treponema pallidum
           subsp. pallidum SS14]
 gi|6225161|sp|O83520|CLPP1_TREPA RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|3322799|gb|AAC65495.1| ATP-dependent Clp protease proteolytic component (clpP-1)
           [Treponema pallidum subsp. pallidum str. Nichols]
 gi|189018312|gb|ACD70930.1| ATP-dependent Clp protease proteolytic component [Treponema
           pallidum subsp. pallidum SS14]
 gi|291059884|gb|ADD72619.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Treponema
           pallidum subsp. pallidum str. Chicago]
          Length = 203

 Score =  230 bits (586), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 104/191 (54%), Positives = 146/191 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ+  GERSYDI+SRLLK+RI+FV G+I D +A L+ AQLLFLE++NP K+ISL
Sbjct: 8   LVPYVIEQSGGGERSYDIFSRLLKDRIIFVDGEITDAVADLVVAQLLFLESQNPDKDISL 67

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+A+YDTMQ I P + T C+GQA+SM ++LL+ G  G RFALP++R+++
Sbjct: 68  YINSPGGAVTAGLAVYDTMQHICPEVQTICLGQASSMAAVLLAGGAPGKRFALPSSRVMI 127

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASD+   AQ+I+++K      +  + G++ E+V + ++RD  +SA +AC 
Sbjct: 128 HQPWGGVQGQASDVCIQAQEILRLKTLTIAYFALHTGQSEEQVREDMERDFFLSAEQACS 187

Query: 198 WGVVDKVLMSR 208
           +G+VD V+  R
Sbjct: 188 YGIVDTVMKRR 198


>gi|260102504|ref|ZP_05752741.1| ATP-dependent Clp protease [Lactobacillus helveticus DSM 20075]
 gi|112148370|gb|ABI13539.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           helveticus CNRZ32]
 gi|260083687|gb|EEW67807.1| ATP-dependent Clp protease [Lactobacillus helveticus DSM 20075]
 gi|328461831|gb|EGF34057.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           helveticus MTCC 5463]
          Length = 194

 Score =  230 bits (586), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 101/191 (52%), Positives = 150/191 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQT RGER+YDIYSRLLK+RI+ ++G+I D MA  I AQLLFL+A++  K+ISL
Sbjct: 2   LVPTVIEQTARGERAYDIYSRLLKDRIIMLSGEINDQMANSIIAQLLFLDAQDNTKDISL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+T+G+AI DTM FIK  +ST  +G AASM S++L++G KG RFALPN+ +L+
Sbjct: 62  YINSPGGVITSGLAIMDTMNFIKSDVSTIAIGMAASMASIILTSGTKGKRFALPNSTVLI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQ +DI+  A +I+K ++++NEI  +  G+  E+++K  +RD+ ++A EA +
Sbjct: 122 HQPLGGAQGQQTDIQIAANEILKSRKKINEILHETTGQPLEKIQKDTERDNYLTAEEAKE 181

Query: 198 WGVVDKVLMSR 208
           +G++D+++ ++
Sbjct: 182 YGLIDEIMANK 192


>gi|170078453|ref|YP_001735091.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. PCC 7002]
 gi|169886122|gb|ACA99835.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. PCC 7002]
          Length = 198

 Score =  230 bits (586), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 104/188 (55%), Positives = 146/188 (77%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+E + RGER++DIYSRLL+ERIVF+  Q+ D +A LI AQLLFLEA++P+K+I L
Sbjct: 1   MIPTVIESSGRGERAFDIYSRLLRERIVFLGTQVNDEIANLIVAQLLFLEADDPEKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AGM I+DTM  ++P + T C+G AASMG+ LLSAG KG R +LPN+RI++
Sbjct: 61  YINSPGGSVSAGMGIFDTMNQVRPDVCTICIGLAASMGAFLLSAGAKGKRMSLPNSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+ +K +LN+    + G+  E++E   DRD  MSA+EA D
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYLKGKLNQHLADHTGQPLEKIEIDTDRDFFMSAAEAKD 180

Query: 198 WGVVDKVL 205
           +G++D+V+
Sbjct: 181 YGLIDQVI 188


>gi|254423153|ref|ZP_05036871.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. PCC 7335]
 gi|196190642|gb|EDX85606.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. PCC 7335]
          Length = 201

 Score =  230 bits (586), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 103/188 (54%), Positives = 144/188 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+EQ+ RGER++DIYSRLL+ERI+F+ GQ+      LI AQ+LFLEAE+P+K+I L
Sbjct: 1   MIPTVIEQSGRGERAFDIYSRLLRERIIFLHGQVTADSMNLIVAQMLFLEAEDPEKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG+ +YDTM  I+P ++T CMG AASMG+ LLSAG KG R  LPN R+++
Sbjct: 61  YINSPGGSVSAGLGLYDTMNHIRPDVATICMGLAASMGAFLLSAGAKGKRMILPNGRVMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQA+DIE  A++I+ +K  LNE   K+ G+  E++++  +RD  MS  EA +
Sbjct: 121 HQPSGGAQGQATDIEIQAKEILYLKTMLNEALAKHTGQPLEKIKEDTERDFFMSPQEAME 180

Query: 198 WGVVDKVL 205
           +G+VD+V+
Sbjct: 181 YGLVDQVI 188


>gi|319788749|ref|YP_004090064.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ruminococcus
           albus 7]
 gi|315450616|gb|ADU24178.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ruminococcus
           albus 7]
          Length = 196

 Score =  230 bits (586), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 102/196 (52%), Positives = 152/196 (77%), Gaps = 3/196 (1%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP VVEQT+RGERS+DI+SRLL +RI+ +   I+DH+A+L+ +QLL+LE+++P+K+I
Sbjct: 1   MALVPYVVEQTSRGERSFDIFSRLLNDRIIMLCEAIDDHVASLVISQLLYLESQDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMAIYDT+Q+I+  ++T C+G AASMG+ LLS+G KG RF+LPN+ I
Sbjct: 61  DLYINSPGGSVTAGMAIYDTIQYIRCDVNTICIGMAASMGAFLLSSGTKGKRFSLPNSEI 120

Query: 136 LLHQP---SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           ++HQP    GG SGQ +D++ H+  +V  + +LN I  +N GK+ E++    +RD+ ++A
Sbjct: 121 MIHQPLIGGGGISGQCTDVKIHSDHLVATREKLNRILAENSGKSIEQIAIDTERDNYLTA 180

Query: 193 SEACDWGVVDKVLMSR 208
            EA ++G++DKV+  R
Sbjct: 181 QEAMEYGLIDKVITKR 196


>gi|116333303|ref|YP_794830.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           brevis ATCC 367]
 gi|122270009|sp|Q03SM3|CLPP_LACBA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|116098650|gb|ABJ63799.1| ATP-dependent Clp protease proteolytic subunit ClpP [Lactobacillus
           brevis ATCC 367]
          Length = 198

 Score =  230 bits (586), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 102/190 (53%), Positives = 148/190 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQ++RGER+YDIYSRLLK+RI+ ++G IED MA  I AQLLFL+A++  K+I
Sbjct: 1   MNLVPTVIEQSSRGERAYDIYSRLLKDRIIMLSGPIEDDMANAIIAQLLFLDAQDSTKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGGVV++G+AIYDTM FI+  + T  +G AASM S+L S+G KG RFALP+A++
Sbjct: 61  SLYINSPGGVVSSGLAIYDTMNFIQSDVQTITLGMAASMASVLASSGTKGKRFALPHAQV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQ ++IE  A++I+K +  +N+I  +N G+  E + +  +RD+ +SA EA
Sbjct: 121 MIHQPSGGAQGQQTEIEIAAREILKTRELINKILAENSGQPIERLNQDTERDNYLSAQEA 180

Query: 196 CDWGVVDKVL 205
            D+G++D ++
Sbjct: 181 VDYGLIDHIM 190


>gi|269837422|ref|YP_003319650.1| Endopeptidase Clp [Sphaerobacter thermophilus DSM 20745]
 gi|269786685|gb|ACZ38828.1| Endopeptidase Clp [Sphaerobacter thermophilus DSM 20745]
          Length = 209

 Score =  229 bits (585), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 102/189 (53%), Positives = 145/189 (76%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            L+PMVVE TNRGER+YDIYSRLL++RI+F+   ++D +A  I AQ++FLE ENP+++I 
Sbjct: 11  ALIPMVVETTNRGERAYDIYSRLLRDRIIFLGTPVDDQIANAIIAQMIFLEYENPEQDIK 70

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG+V AG+AIYDTMQ I+  ++T+C+G  ASM ++LL+AG KG RFALPN+RIL
Sbjct: 71  LYINSPGGLVYAGLAIYDTMQMIRCDVATYCIGLGASMAAVLLAAGTKGKRFALPNSRIL 130

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQ S GF G   DIE  A++ + +  ++ EI   + G+++E V++  +RD+ MSA EA 
Sbjct: 131 IHQGSSGFRGSVPDIEIQARETINLTTKMTEIMAYHTGQSFERVKRDTERDYFMSAQEAK 190

Query: 197 DWGVVDKVL 205
           ++G+VD VL
Sbjct: 191 EYGIVDHVL 199


>gi|255657287|ref|ZP_05402696.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile QCD-23m63]
 gi|296451860|ref|ZP_06893579.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile NAP08]
 gi|296879744|ref|ZP_06903718.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile NAP07]
 gi|296259339|gb|EFH06215.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile NAP08]
 gi|296429215|gb|EFH15088.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile NAP07]
          Length = 194

 Score =  229 bits (585), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 101/190 (53%), Positives = 147/190 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT++GERSYDIYS+LLK+RI+F+  +I D +A+L+ AQLLFLE+E+P  +I
Sbjct: 1   MSLVPHVIEQTSQGERSYDIYSKLLKDRIIFIGEEINDAIASLVVAQLLFLESEDPDSDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG VTAG AIYDTM +++  +ST C+G AASM + LL+ G  G R+ALPNA I
Sbjct: 61  IIYINSPGGSVTAGFAIYDTMNYVRCDVSTICIGMAASMSAFLLAGGTHGKRYALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+D++    +I+KIK RL+ I+ +N GK+ E++ +  DRD+ M+A EA
Sbjct: 121 MIHQPMGGAKGQATDVKIAVDNILKIKERLDRIFSENTGKSIEDIRRDTDRDNFMTALEA 180

Query: 196 CDWGVVDKVL 205
            ++G++D ++
Sbjct: 181 KEYGLIDYIM 190


>gi|189200839|ref|XP_001936756.1| ATP-dependent Clp protease proteolytic subunit 1 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187983855|gb|EDU49343.1| ATP-dependent Clp protease proteolytic subunit 1 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 244

 Score =  229 bits (585), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 105/192 (54%), Positives = 149/192 (77%), Gaps = 2/192 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V E T  G ++ DI+SRLL+ERI+ + G+++D M+    AQLLFLEA+NP+K IS+Y
Sbjct: 43  IPYVTETTGGGWKTSDIFSRLLQERIICLNGEVDDFMSANAVAQLLFLEADNPEKPISMY 102

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG V+AG+AIYDTM +IK P+ST CMG AASMGSLLL+ G +G R+ LP+AR+++H
Sbjct: 103 INSPGGSVSAGLAIYDTMNYIKSPVSTICMGIAASMGSLLLAGGAEGQRYILPHARVMIH 162

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKN--CGKTYEEVEKTLDRDHIMSASEAC 196
           QPSGG+ G+ASDI  HA++I++I+ +LN IY  +    ++ EE+EK ++RD+ M A EA 
Sbjct: 163 QPSGGYRGKASDIADHAKEILRIRDKLNRIYQSHLTTKRSLEEIEKYMERDYYMDAQEAV 222

Query: 197 DWGVVDKVLMSR 208
           ++G+VDK+L  R
Sbjct: 223 EFGIVDKILEKR 234


>gi|78780133|ref|YP_398245.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Prochlorococcus marinus str. MIT 9312]
 gi|115311352|sp|Q317Y6|CLPP4_PROM9 RecName: Full=ATP-dependent Clp protease proteolytic subunit 4;
           AltName: Full=Endopeptidase Clp 4
 gi|78713632|gb|ABB50809.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Prochlorococcus marinus str. MIT 9312]
          Length = 219

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 104/190 (54%), Positives = 145/190 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +G VP V+EQ+ RGER++DIYSRLL+ERI+F+   I D ++  + AQLLFLEAE+P+K+I
Sbjct: 28  IGAVPTVIEQSGRGERAFDIYSRLLRERIIFLGSGINDQVSDSLVAQLLFLEAEDPEKDI 87

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG VTAGMAIYDTMQ I P + T C G AASMG+ LLS G KG R ALPN+RI
Sbjct: 88  QIYINSPGGSVTAGMAIYDTMQQISPDVVTICFGVAASMGAFLLSGGAKGKRLALPNSRI 147

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA +IE  A++I+ +K+ LN +  ++ G+  E++ +  +RD+ +S SEA
Sbjct: 148 MIHQPLGGAQGQAVEIEIQAKEILFLKKTLNSLLAEHTGQPLEKINEDTERDYFLSPSEA 207

Query: 196 CDWGVVDKVL 205
            ++G++DKV+
Sbjct: 208 VEYGLIDKVI 217


>gi|167769421|ref|ZP_02441474.1| hypothetical protein ANACOL_00751 [Anaerotruncus colihominis DSM
           17241]
 gi|167668389|gb|EDS12519.1| hypothetical protein ANACOL_00751 [Anaerotruncus colihominis DSM
           17241]
          Length = 189

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 105/188 (55%), Positives = 142/188 (75%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MVVEQTNRGERSYDI+SRLL +RIV +  ++ D  A+L+ AQLL+LE ++P K+I+LYIN
Sbjct: 1   MVVEQTNRGERSYDIFSRLLNDRIVMLCDEVNDTTASLVVAQLLYLEGQDPDKDINLYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGG VTAGMAIYDTM F+K  +ST C+G AASMG+ L  AG KG R ALPNA I++HQP
Sbjct: 61  SPGGSVTAGMAIYDTMNFVKCDVSTTCIGLAASMGAFLFGAGAKGKRIALPNAEIMIHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
           SGG  GQASD++ H   I++ + +LN I  +  G+  E +E+  +RD+ M+A +A ++G+
Sbjct: 121 SGGARGQASDMKIHTDWIIRTREKLNRIMAEQTGQPIEVIERDTERDNFMTAQQAMEYGL 180

Query: 201 VDKVLMSR 208
           VDK++  R
Sbjct: 181 VDKIIAHR 188


>gi|124013817|sp|Q2S2L8|CLPP1_SALRD RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
          Length = 233

 Score =  229 bits (584), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 105/189 (55%), Positives = 146/189 (77%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVP VVEQT RGER+YDI+SRLLKERIVF+   I D +A L  AQLL+LE+E   + I+
Sbjct: 20  GLVPKVVEQTTRGERAYDIFSRLLKERIVFIGTPINDQIANLTVAQLLYLESEGSSQPIN 79

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGGV+ +G+ +YDTMQ+++ PIST C+G AASMGS+LL+ GE G R  LPN+R++
Sbjct: 80  IYINSPGGVIYSGLGVYDTMQYVEAPISTTCVGLAASMGSVLLAGGEDGQRACLPNSRVM 139

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQASDIE  A+++  +K+RL +I   + GK  +++E+  DR+H +SA EA 
Sbjct: 140 MHQPMGGTEGQASDIEIQAKEMAWLKKRLYQILSFHTGKDIDQIEEDADRNHWLSAEEAQ 199

Query: 197 DWGVVDKVL 205
           ++G+VD+V+
Sbjct: 200 EYGLVDQVM 208


>gi|183220373|ref|YP_001838369.1| ATP-dependent Clp protease proteolytic subunit [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189910487|ref|YP_001962042.1| ATP-dependent Clp protease proteolytic subunit [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167775163|gb|ABZ93464.1| Protease subunit of endopeptidase Clp [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167778795|gb|ABZ97093.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 200

 Score =  229 bits (584), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 105/191 (54%), Positives = 143/191 (74%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P V EQT+RG    D+YSRLL++RI+F+   I+D  A  +CAQLLFLEAENP ++I L
Sbjct: 4   LLPYVSEQTSRGIDRMDVYSRLLRDRIIFLGAGIDDTYANAVCAQLLFLEAENPDRDIYL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V++G+AIYDTMQ IKP + T C+GQA+SM +LLL+ G KG R ALPN RI++
Sbjct: 64  YINSPGGYVSSGLAIYDTMQLIKPEVRTLCIGQASSMAALLLAGGAKGKRSALPNGRIMM 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I+K K  L ++Y K+ GK   +++K  +R+  MSA EA +
Sbjct: 124 HQPYGGAGGQASDIEISAKEIIKTKNTLIDLYCKHIGKPAAQIQKDTERNFFMSAEEAKE 183

Query: 198 WGVVDKVLMSR 208
           +G++D V++ R
Sbjct: 184 YGIIDNVILER 194


>gi|299821953|ref|ZP_07053841.1| ATP-dependent Clp protease proteolytic subunit [Listeria grayi DSM
           20601]
 gi|299817618|gb|EFI84854.1| ATP-dependent Clp protease proteolytic subunit [Listeria grayi DSM
           20601]
          Length = 203

 Score =  229 bits (584), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 103/196 (52%), Positives = 147/196 (75%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
           ++ + L+P V+EQT+RGER+YDIYSRLLK+RI+ +   I+D++A  I AQLLFL++++P 
Sbjct: 4   NITMNLIPTVIEQTSRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVAQLLFLDSQDPD 63

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K+I LYINSPGG ++AGMAIYDTM  +K  + T  MG AASMGS LL+AG  G RFALPN
Sbjct: 64  KDIYLYINSPGGSISAGMAIYDTMNLVKADVQTIGMGMAASMGSFLLAAGADGKRFALPN 123

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           + I++HQP GG  GQA++IE  A+ I+KIK R+N I  +  G+  E + +  DRD+ M+A
Sbjct: 124 SEIMIHQPLGGAQGQATEIEIAARHILKIKERMNRILSEKTGQPIEVIARDTDRDNFMTA 183

Query: 193 SEACDWGVVDKVLMSR 208
            EA ++G++D ++ S+
Sbjct: 184 DEAKEYGLIDDIISSK 199


>gi|83814886|ref|YP_445563.1| Clp protease [Salinibacter ruber DSM 13855]
 gi|83756280|gb|ABC44393.1| Clp protease [Salinibacter ruber DSM 13855]
          Length = 246

 Score =  229 bits (584), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 105/189 (55%), Positives = 146/189 (77%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVP VVEQT RGER+YDI+SRLLKERIVF+   I D +A L  AQLL+LE+E   + I+
Sbjct: 33  GLVPKVVEQTTRGERAYDIFSRLLKERIVFIGTPINDQIANLTVAQLLYLESEGSSQPIN 92

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGGV+ +G+ +YDTMQ+++ PIST C+G AASMGS+LL+ GE G R  LPN+R++
Sbjct: 93  IYINSPGGVIYSGLGVYDTMQYVEAPISTTCVGLAASMGSVLLAGGEDGQRACLPNSRVM 152

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQASDIE  A+++  +K+RL +I   + GK  +++E+  DR+H +SA EA 
Sbjct: 153 MHQPMGGTEGQASDIEIQAKEMAWLKKRLYQILSFHTGKDIDQIEEDADRNHWLSAEEAQ 212

Query: 197 DWGVVDKVL 205
           ++G+VD+V+
Sbjct: 213 EYGLVDQVM 221


>gi|115384910|ref|XP_001209002.1| ATP-dependent Clp protease proteolytic subunit [Aspergillus terreus
           NIH2624]
 gi|114196694|gb|EAU38394.1| ATP-dependent Clp protease proteolytic subunit [Aspergillus terreus
           NIH2624]
          Length = 258

 Score =  229 bits (584), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 109/195 (55%), Positives = 147/195 (75%), Gaps = 4/195 (2%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
            P V E    G  +YDI+SRLLKERI+ + G++++ M+  I AQLLFLEA+NPQK I LY
Sbjct: 48  TPFVTETVGGGWHTYDIFSRLLKERIICLNGEVDETMSASIVAQLLFLEADNPQKPIHLY 107

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDTM +I  P+ST C+GQAASMGSLLL  G  G R+ LP++ I++H
Sbjct: 108 INSPGGSVTAGLAIYDTMTYIASPVSTICVGQAASMGSLLLCGGHPGKRYCLPHSSIMMH 167

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKN-CGK---TYEEVEKTLDRDHIMSASE 194
           QPSGG+ GQASDI  HA++I++++ +LN+IY ++  GK   + EE+EK ++RD+ M A E
Sbjct: 168 QPSGGYFGQASDIAIHAKEILRVREQLNKIYKRHLTGKKEMSLEEIEKLMERDYFMGAKE 227

Query: 195 ACDWGVVDKVLMSRI 209
           A D G+VD+VL  R+
Sbjct: 228 ALDMGIVDEVLDRRV 242


>gi|294507446|ref|YP_003571504.1| ATP-dependent Clp protease proteolytic subunit [Salinibacter ruber
           M8]
 gi|294343774|emb|CBH24552.1| ATP-dependent Clp protease proteolytic subunit [Salinibacter ruber
           M8]
          Length = 261

 Score =  229 bits (584), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 105/189 (55%), Positives = 146/189 (77%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVP VVEQT RGER+YDI+SRLLKERIVF+   I D +A L  AQLL+LE+E   + I+
Sbjct: 48  GLVPKVVEQTTRGERAYDIFSRLLKERIVFIGTPINDQIANLTVAQLLYLESEGSSQPIN 107

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGGV+ +G+ +YDTMQ+++ PIST C+G AASMGS+LL+ GE G R  LPN+R++
Sbjct: 108 IYINSPGGVIYSGLGVYDTMQYVEAPISTTCVGLAASMGSVLLAGGEDGQRACLPNSRVM 167

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQASDIE  A+++  +K+RL +I   + GK  +++E+  DR+H +SA EA 
Sbjct: 168 MHQPMGGTEGQASDIEIQAKEMAWLKKRLYQILSFHTGKDIDQIEEDADRNHWLSAEEAQ 227

Query: 197 DWGVVDKVL 205
           ++G+VD+V+
Sbjct: 228 EYGLVDQVM 236


>gi|145219256|ref|YP_001129965.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Prosthecochloris vibrioformis DSM 265]
 gi|189082462|sp|A4SDA4|CLPP_PROVI RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|145205420|gb|ABP36463.1| ATP-dependent Clp protease proteolytic subunit ClpP [Chlorobium
           phaeovibrioides DSM 265]
          Length = 225

 Score =  229 bits (584), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 105/197 (53%), Positives = 151/197 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMV+E + RGER++DI+SRLL+ERI+F+   I++H+A LI AQL+FLE+E+P ++I +
Sbjct: 28  LVPMVIETSGRGERAFDIFSRLLRERIIFLGSGIDEHVAGLIMAQLIFLESEDPDRDIFI 87

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG V+AG+ IYDTMQ+I+P +ST C+G AASMG+ LL++G KG R +LP++RI++
Sbjct: 88  YVNSPGGSVSAGLGIYDTMQYIRPDVSTVCVGMAASMGAFLLASGAKGKRASLPHSRIMI 147

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQ SDI   A++I KI+R L EI  K+ GK  ++V +  +RD  M A EA +
Sbjct: 148 HQPSGGAQGQESDIIIQAREIEKIRRLLEEIMAKHTGKDVQQVREDSERDRWMDAGEALE 207

Query: 198 WGVVDKVLMSRIDIEEK 214
           +G++D+V   R   E+K
Sbjct: 208 YGIIDQVFEKRPAPEKK 224


>gi|116327862|ref|YP_797582.1| protease subunit of endopeptidase Clp [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116330746|ref|YP_800464.1| protease subunit of endopeptidase Clp [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116120606|gb|ABJ78649.1| Protease subunit of endopeptidase Clp [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116124435|gb|ABJ75706.1| Protease subunit of endopeptidase Clp [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 195

 Score =  229 bits (584), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 107/190 (56%), Positives = 152/190 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++P V+EQT+RGERSYDI+SRLLK+RI+F+   I D  A +I AQLLFLEAENP+++I
Sbjct: 1   MSVIPYVIEQTSRGERSYDIFSRLLKDRIIFLGNAINDDYANVITAQLLFLEAENPERDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LY+NSPGG V++G+AIYDTMQ+IKP + T C+GQA+SM +LLL+ G  G R ALPN+RI
Sbjct: 61  YLYLNSPGGYVSSGLAIYDTMQYIKPDVRTLCLGQASSMAALLLAGGAAGKRSALPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG +GQASDIE  A++++K+K  LN IY K+ GK+ E+++K  +R+  M+A EA
Sbjct: 121 MMHQPMGGATGQASDIEIQAREVLKLKEILNSIYHKHTGKSVEQIQKDTERNFYMTAEEA 180

Query: 196 CDWGVVDKVL 205
            ++G++D V+
Sbjct: 181 KNYGIIDTVI 190


>gi|325187857|emb|CCA22400.1| ATPdependent Clp protease proteolytic subunit putati [Albugo
           laibachii Nc14]
          Length = 250

 Score =  229 bits (583), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 105/202 (51%), Positives = 156/202 (77%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
           F   +P+V+E+++ GER+YDIYSRLLKERI+FV G I+D +++L+ AQLL+LE+E P K+
Sbjct: 49  FSSYIPIVLEKSHSGERAYDIYSRLLKERIIFVQGPIDDTLSSLVTAQLLYLESEQPDKD 108

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I +YINSPGG+VT+G+AI+DTMQ+I P + T C+GQAASM +LLL+ G  G R+ALPN+R
Sbjct: 109 IYMYINSPGGIVTSGLAIFDTMQYIHPNVRTLCLGQAASMAALLLAGGAPGHRYALPNSR 168

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQPSGG  G ASDI  HA++I+K++ RLN++Y  + GK+   +EK +DRD  M   E
Sbjct: 169 IMIHQPSGGTRGMASDIAIHAEEIIKLRHRLNKLYSSHTGKSISTIEKAMDRDLFMDPEE 228

Query: 195 ACDWGVVDKVLMSRIDIEEKSK 216
           A ++G++D ++  R  + + ++
Sbjct: 229 AVNFGIIDSIMRERKHLHQLNR 250


>gi|149178551|ref|ZP_01857138.1| ATP-dependent clp protease proteolytic subunit [Planctomyces maris
           DSM 8797]
 gi|148842569|gb|EDL56945.1| ATP-dependent clp protease proteolytic subunit [Planctomyces maris
           DSM 8797]
          Length = 201

 Score =  229 bits (583), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 103/188 (54%), Positives = 144/188 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P V+E+  R ER+ DIYSRLL++RIV +  Q+ D +A  + AQLLFL+ ++P+ +I  
Sbjct: 4   LTPYVIEKNGRDERAMDIYSRLLQDRIVMMGSQVNDQVAQSLVAQLLFLQFDDPEADIHF 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGMAIYDTMQ+I   ++T+C+GQAASMG+LLL+AG  G R ALPN+RI++
Sbjct: 64  YINSPGGSVTAGMAIYDTMQYISCDVATYCIGQAASMGALLLTAGAAGKRNALPNSRIMI 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP  G  G A+D+E HA++++K+KRRLNEI + + G+T E++E+  DRD+ M A EA  
Sbjct: 124 HQPLAGMQGTATDLEIHAKEVLKMKRRLNEILLHHTGQTLEKIEEDTDRDNFMDAQEAKS 183

Query: 198 WGVVDKVL 205
           +G++D VL
Sbjct: 184 YGLIDNVL 191


>gi|313617264|gb|EFR89730.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           innocua FSL S4-378]
          Length = 183

 Score =  229 bits (583), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 104/183 (56%), Positives = 140/183 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT+RGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL+A++P+K+I
Sbjct: 1   MNLIPTVIEQTSRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG ++AGMAIYDTM F+K  + T  MG AASMGS LL+AG  G RFALPNA I
Sbjct: 61  FLYINSPGGSISAGMAIYDTMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+KIK R+N I  +  G+ YE + +  DRD+ M+A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAARHILKIKERMNTIMAEKTGQPYEVIARDTDRDNFMTAQEA 180

Query: 196 CDW 198
            D+
Sbjct: 181 KDY 183


>gi|86605879|ref|YP_474642.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. JA-3-3Ab]
 gi|115311348|sp|Q2JV68|CLPP2_SYNJA RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|86554421|gb|ABC99379.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. JA-3-3Ab]
          Length = 200

 Score =  229 bits (583), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 102/191 (53%), Positives = 147/191 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+EQ+ RGER++DIYSRLL++RI+F+  Q++D +A LI AQ+L+LE+E+P+K+I L
Sbjct: 1   MIPTVIEQSARGERAFDIYSRLLRDRIIFLGTQVDDDIANLIVAQMLYLESEDPEKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AGMAIYDTMQ I+P +ST C+G AASMG+ LL+ G KG R ALP+ARI++
Sbjct: 61  YINSPGGSVYAGMAIYDTMQHIQPDVSTICIGLAASMGAFLLAGGAKGKRIALPHARIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  G A+DIE  A++I+ IK  LN +   + G+  E +E+  DRD+ M+  +A +
Sbjct: 121 HQPLGGAQGPATDIEIQAKEILFIKNSLNSLLAYHTGQPLERIERDTDRDNFMTPEQAKE 180

Query: 198 WGVVDKVLMSR 208
           +G++D+V+  R
Sbjct: 181 YGLIDQVITRR 191


>gi|253577702|ref|ZP_04855005.1| clp protease [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251842907|gb|EES70953.1| clp protease [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 196

 Score =  229 bits (583), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 105/188 (55%), Positives = 139/188 (73%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+EQT RGERSYDIYSRLLK+RIVF+   I+D +A  I AQ+LFL AE+P+K+I  
Sbjct: 4   VIPYVIEQTGRGERSYDIYSRLLKDRIVFLGSAIDDQVANSIMAQMLFLAAEDPEKDIYF 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  +AG AIYDTMQ++KP + T C G AAS  ++LL AG KG RFALPN+ I++
Sbjct: 64  YINSPGGSTSAGFAIYDTMQYVKPDVQTICSGMAASFAAILLMAGAKGKRFALPNSEIMI 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A  I++ +  LN I  +  G+  E +EK +DRD+ MSA EA +
Sbjct: 124 HQPHGGAQGQASDIAISANRILRTRAVLNTIAAECTGQPLERIEKDMDRDYFMSADEARE 183

Query: 198 WGVVDKVL 205
           +G++D+V+
Sbjct: 184 YGIIDQVI 191


>gi|145233903|ref|XP_001400324.1| ATP-dependent Clp protease proteolytic subunit [Aspergillus niger
           CBS 513.88]
 gi|134057262|emb|CAK96425.1| unnamed protein product [Aspergillus niger]
          Length = 251

 Score =  229 bits (583), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 109/194 (56%), Positives = 146/194 (75%), Gaps = 4/194 (2%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
            P V E    G  +YDI+SRLLKERI+ + G++++ M+  I AQLLFLEA+NPQK I LY
Sbjct: 46  TPFVTETVGGGWHTYDIFSRLLKERIICLNGEVDETMSASIVAQLLFLEADNPQKPIHLY 105

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDTM +I  P+ST C+GQAASMGSLLL  G  G RF LP++ I++H
Sbjct: 106 INSPGGSVTAGLAIYDTMTYIASPVSTICVGQAASMGSLLLCGGHPGKRFCLPHSSIMMH 165

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKN-CGK---TYEEVEKTLDRDHIMSASE 194
           QPSGG+ GQASDI  HA++I++++ +LN+IY ++  GK   T +E+EK ++RD+ M A E
Sbjct: 166 QPSGGYFGQASDIAIHAKEILRVRSQLNKIYKRHLTGKKEMTLDEIEKLMERDYFMGAKE 225

Query: 195 ACDWGVVDKVLMSR 208
           A D G+VD++L  R
Sbjct: 226 ALDMGIVDEILDRR 239


>gi|87123284|ref|ZP_01079135.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. RS9917]
 gi|86169004|gb|EAQ70260.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. RS9917]
          Length = 199

 Score =  229 bits (583), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 107/192 (55%), Positives = 145/192 (75%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVEQ+ RGERS+DIYSRLL+ERI+F+   I+D +A  + AQLLFLEAE+P+KEI +Y
Sbjct: 1   MPTVVEQSGRGERSFDIYSRLLRERIIFLGTGIDDQVADALVAQLLFLEAEDPEKEIQIY 60

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDTMQ + P + T C G AASMG+ LLS G KG R ALP+ARI++H
Sbjct: 61  INSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPSARIMIH 120

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA DIE  AQ+I+ +K  LN +  ++ G+  E++ +  DRD+ +S +EA ++
Sbjct: 121 QPLGGAQGQAVDIEIQAQEILFLKDTLNGLMAEHTGQPLEKIAEDTDRDYFLSPAEAVEY 180

Query: 199 GVVDKVLMSRID 210
           G++D+V+ S  D
Sbjct: 181 GLIDRVVDSSGD 192


>gi|259501068|ref|ZP_05743970.1| ATP-dependent Clp protease [Lactobacillus iners DSM 13335]
 gi|302190483|ref|ZP_07266737.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus iners
           AB-1]
 gi|309803807|ref|ZP_07697892.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus iners LactinV 11V1-d]
 gi|309804605|ref|ZP_07698670.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus iners LactinV 09V1-c]
 gi|309805854|ref|ZP_07699889.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus iners LactinV 03V1-b]
 gi|309808282|ref|ZP_07702189.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus iners LactinV 01V1-a]
 gi|309809384|ref|ZP_07703246.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus iners SPIN 2503V10-D]
 gi|312870768|ref|ZP_07730874.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus iners LEAF 3008A-a]
 gi|312873057|ref|ZP_07733116.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus iners LEAF 2062A-h1]
 gi|312874331|ref|ZP_07734362.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus iners LEAF 2052A-d]
 gi|312875077|ref|ZP_07735094.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus iners LEAF 2053A-b]
 gi|315653872|ref|ZP_07906788.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus iners
           ATCC 55195]
 gi|325913268|ref|ZP_08175636.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus iners UPII 60-B]
 gi|329920382|ref|ZP_08277114.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus iners SPIN 1401G]
 gi|259167762|gb|EEW52257.1| ATP-dependent Clp protease [Lactobacillus iners DSM 13335]
 gi|308164041|gb|EFO66303.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus iners LactinV 11V1-d]
 gi|308165997|gb|EFO68215.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus iners LactinV 09V1-c]
 gi|308167763|gb|EFO69907.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus iners LactinV 03V1-b]
 gi|308168485|gb|EFO70596.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus iners LactinV 01V1-a]
 gi|308170295|gb|EFO72326.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus iners SPIN 2503V10-D]
 gi|311089367|gb|EFQ47794.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus iners LEAF 2053A-b]
 gi|311090097|gb|EFQ48510.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus iners LEAF 2052A-d]
 gi|311091290|gb|EFQ49675.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus iners LEAF 2062A-h1]
 gi|311093644|gb|EFQ51982.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus iners LEAF 3008A-a]
 gi|315488568|gb|EFU78214.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus iners
           ATCC 55195]
 gi|325477371|gb|EGC80515.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus iners UPII 60-B]
 gi|328936058|gb|EGG32511.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus iners SPIN 1401G]
          Length = 194

 Score =  229 bits (583), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 102/191 (53%), Positives = 147/191 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQT RGER+YDIYSRLLK+R++ ++G+I D MA  I AQLLFL+A++  K+ISL
Sbjct: 2   LVPTVIEQTARGERAYDIYSRLLKDRVIMLSGEINDTMANSIIAQLLFLDAQDNTKDISL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+T+G+AI DTM FIK  +ST  +G AASM S+LL+AG KG RFALPN+ +L+
Sbjct: 62  YINSPGGVITSGLAIMDTMNFIKSDVSTIAIGMAASMASILLTAGTKGKRFALPNSTVLI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQ +DI+  A +I+K + ++N I  +  G+  E+++   +RD  ++A EA D
Sbjct: 122 HQPLGGAQGQQTDIQIAANEILKSREKINSILHETTGQPLEKIQADTERDKYLTAQEAKD 181

Query: 198 WGVVDKVLMSR 208
           +G++D++L+++
Sbjct: 182 YGLIDEILVNK 192


>gi|256854365|ref|ZP_05559729.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis T8]
 gi|256709925|gb|EEU24969.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis T8]
          Length = 196

 Score =  229 bits (583), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 101/190 (53%), Positives = 149/190 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQ++RGER+YDIYSRLLK+RI+ ++G I+D++A  + AQLLFL+A++ +K+I
Sbjct: 1   MNLIPTVIEQSSRGERAYDIYSRLLKDRIIMLSGPIDDNVANSVIAQLLFLDAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG V+AG+AI+DTM F+K  + T  +G AASMGS LL+AG+KG RFALPNA I
Sbjct: 61  YLYINSPGGSVSAGLAIFDTMNFVKADVQTIVLGMAASMGSFLLTAGQKGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+  ++RLN I  +  G+  E +E+  DRD+ M+A +A
Sbjct: 121 MIHQPLGGAQGQATEIEIAARHILDTRQRLNSILAERTGQPIEVIERDTDRDNYMTAEQA 180

Query: 196 CDWGVVDKVL 205
            ++G++D+V+
Sbjct: 181 KEYGLIDEVM 190


>gi|17228733|ref|NP_485281.1| ATP-dependent Clp protease proteolytic subunit [Nostoc sp. PCC
           7120]
 gi|21759071|sp|Q8YXH5|CLPP1_ANASP RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|17130585|dbj|BAB73195.1| ATP-dependent Clp protease proteolytic subunit [Nostoc sp. PCC
           7120]
          Length = 204

 Score =  228 bits (582), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 104/187 (55%), Positives = 146/187 (78%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P+V+EQ+ RGER++DIYSRLL+ERIVF+  Q++ ++A LI AQLLFL+AE+P+K+I LY
Sbjct: 3   IPIVIEQSGRGERAFDIYSRLLRERIVFLGQQVDSNLANLIVAQLLFLDAEDPEKDIYLY 62

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAGM I+DTM+ I+P + T C G AASMG+ LLSAG KG R +LP++RI++H
Sbjct: 63  INSPGGSVTAGMGIFDTMKHIRPDVCTICTGLAASMGAFLLSAGAKGKRMSLPHSRIMIH 122

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA+DIE  A++I+  KRRLN+   ++ G+  E + +  +RD  MS  EA D+
Sbjct: 123 QPLGGAQGQATDIEIQAREILYHKRRLNDYLAEHTGQPIERIAEDTERDFFMSPDEAKDY 182

Query: 199 GVVDKVL 205
           G++D+V+
Sbjct: 183 GLIDQVI 189


>gi|86610014|ref|YP_478776.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. JA-2-3B'a(2-13)]
 gi|115311349|sp|Q2JIP1|CLPP2_SYNJB RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|86558556|gb|ABD03513.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. JA-2-3B'a(2-13)]
          Length = 200

 Score =  228 bits (582), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 102/191 (53%), Positives = 147/191 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+EQ+ RGER++DIYSRLL++RI+F+  Q++D +A LI AQ+L+LE+E+P+K+I L
Sbjct: 1   MIPTVIEQSARGERAFDIYSRLLRDRIIFLGTQVDDDIANLIVAQMLYLESEDPEKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AGMAIYDTMQ I+P +ST C+G AASMG+ LL+ G KG R ALP+ARI++
Sbjct: 61  YINSPGGSVYAGMAIYDTMQHIQPDVSTICIGLAASMGAFLLAGGTKGKRIALPHARIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  G A+DIE  A++I+ IK  LN +   + G+  E +E+  DRD+ M+  +A +
Sbjct: 121 HQPLGGAQGPATDIEIQAKEILFIKNSLNSLLAYHTGQPLERIERDTDRDNFMTPEQAKE 180

Query: 198 WGVVDKVLMSR 208
           +G++D+V+  R
Sbjct: 181 YGLIDQVISKR 191


>gi|29375364|ref|NP_814518.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis V583]
 gi|227517733|ref|ZP_03947782.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis TX0104]
 gi|229546606|ref|ZP_04435331.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis TX1322]
 gi|229548713|ref|ZP_04437438.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis ATCC 29200]
 gi|255971227|ref|ZP_05421813.1| peptidase S14 [Enterococcus faecalis T1]
 gi|255973850|ref|ZP_05424436.1| peptidase S14 [Enterococcus faecalis T2]
 gi|256617656|ref|ZP_05474502.1| peptidase S14 [Enterococcus faecalis ATCC 4200]
 gi|256761537|ref|ZP_05502117.1| peptidase S14 [Enterococcus faecalis T3]
 gi|256957363|ref|ZP_05561534.1| peptidase S14 [Enterococcus faecalis DS5]
 gi|256959901|ref|ZP_05564072.1| peptidase S14 [Enterococcus faecalis Merz96]
 gi|256964395|ref|ZP_05568566.1| peptidase S14 [Enterococcus faecalis HIP11704]
 gi|257083692|ref|ZP_05578053.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis Fly1]
 gi|257086127|ref|ZP_05580488.1| peptidase S14 [Enterococcus faecalis D6]
 gi|257089198|ref|ZP_05583559.1| peptidase S14 [Enterococcus faecalis CH188]
 gi|257415340|ref|ZP_05592334.1| peptidase S14 [Enterococcus faecalis AR01/DG]
 gi|257418377|ref|ZP_05595371.1| peptidase S14 [Enterococcus faecalis T11]
 gi|257421026|ref|ZP_05598016.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis X98]
 gi|293384732|ref|ZP_06630586.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis R712]
 gi|293387456|ref|ZP_06632008.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis S613]
 gi|294781490|ref|ZP_06746829.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis PC1.1]
 gi|300859735|ref|ZP_07105823.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TUSoD Ef11]
 gi|307269823|ref|ZP_07551153.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX4248]
 gi|307272582|ref|ZP_07553835.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0855]
 gi|307276252|ref|ZP_07557380.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX2134]
 gi|307284467|ref|ZP_07564629.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0860]
 gi|307289536|ref|ZP_07569481.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0109]
 gi|307296208|ref|ZP_07576036.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0411]
 gi|312900365|ref|ZP_07759676.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0470]
 gi|312904208|ref|ZP_07763370.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0635]
 gi|312908569|ref|ZP_07767512.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis DAPTO 512]
 gi|312910494|ref|ZP_07769339.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis DAPTO 516]
 gi|312951861|ref|ZP_07770750.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0102]
 gi|60389766|sp|Q837R0|CLPP_ENTFA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|29342824|gb|AAO80588.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis V583]
 gi|227074814|gb|EEI12777.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis TX0104]
 gi|229306150|gb|EEN72146.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis ATCC 29200]
 gi|229308263|gb|EEN74250.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis TX1322]
 gi|255962245|gb|EET94721.1| peptidase S14 [Enterococcus faecalis T1]
 gi|255966722|gb|EET97344.1| peptidase S14 [Enterococcus faecalis T2]
 gi|256597183|gb|EEU16359.1| peptidase S14 [Enterococcus faecalis ATCC 4200]
 gi|256682788|gb|EEU22483.1| peptidase S14 [Enterococcus faecalis T3]
 gi|256947859|gb|EEU64491.1| peptidase S14 [Enterococcus faecalis DS5]
 gi|256950397|gb|EEU67029.1| peptidase S14 [Enterococcus faecalis Merz96]
 gi|256954891|gb|EEU71523.1| peptidase S14 [Enterococcus faecalis HIP11704]
 gi|256991722|gb|EEU79024.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis Fly1]
 gi|256994157|gb|EEU81459.1| peptidase S14 [Enterococcus faecalis D6]
 gi|256998010|gb|EEU84530.1| peptidase S14 [Enterococcus faecalis CH188]
 gi|257157168|gb|EEU87128.1| peptidase S14 [Enterococcus faecalis ARO1/DG]
 gi|257160205|gb|EEU90165.1| peptidase S14 [Enterococcus faecalis T11]
 gi|257162850|gb|EEU92810.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis X98]
 gi|291077982|gb|EFE15346.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis R712]
 gi|291083107|gb|EFE20070.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis S613]
 gi|294451420|gb|EFG19883.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis PC1.1]
 gi|295114015|emb|CBL32652.1| ATP-dependent Clp protease proteolytic subunit ClpP [Enterococcus
           sp. 7L76]
 gi|300850553|gb|EFK78302.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TUSoD Ef11]
 gi|306496082|gb|EFM65664.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0411]
 gi|306499497|gb|EFM68869.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0109]
 gi|306503144|gb|EFM72398.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0860]
 gi|306507052|gb|EFM76194.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX2134]
 gi|306510867|gb|EFM79884.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0855]
 gi|306513933|gb|EFM82535.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX4248]
 gi|310625455|gb|EFQ08738.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis DAPTO 512]
 gi|310630159|gb|EFQ13442.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0102]
 gi|310632304|gb|EFQ15587.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0635]
 gi|311289190|gb|EFQ67746.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis DAPTO 516]
 gi|311292553|gb|EFQ71109.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0470]
 gi|315025732|gb|EFT37664.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX2137]
 gi|315029868|gb|EFT41800.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX4000]
 gi|315031465|gb|EFT43397.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0017]
 gi|315036148|gb|EFT48080.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0027]
 gi|315145272|gb|EFT89288.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX2141]
 gi|315148132|gb|EFT92148.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX4244]
 gi|315151531|gb|EFT95547.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0012]
 gi|315153193|gb|EFT97209.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0031]
 gi|315154911|gb|EFT98927.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0043]
 gi|315160005|gb|EFU04022.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0312]
 gi|315161970|gb|EFU05987.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0645]
 gi|315164639|gb|EFU08656.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX1302]
 gi|315166938|gb|EFU10955.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX1341]
 gi|315170665|gb|EFU14682.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX1342]
 gi|315174680|gb|EFU18697.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX1346]
 gi|315573467|gb|EFU85658.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0309B]
 gi|315578035|gb|EFU90226.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0630]
 gi|315581428|gb|EFU93619.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0309A]
 gi|323479964|gb|ADX79403.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis 62]
 gi|327534358|gb|AEA93192.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis OG1RF]
 gi|329577643|gb|EGG59074.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Enterococcus faecalis TX1467]
          Length = 197

 Score =  228 bits (582), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 101/190 (53%), Positives = 149/190 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQ++RGER+YDIYSRLLK+RI+ ++G I+D++A  + AQLLFL+A++ +K+I
Sbjct: 1   MNLIPTVIEQSSRGERAYDIYSRLLKDRIIMLSGPIDDNVANSVIAQLLFLDAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG V+AG+AI+DTM F+K  + T  +G AASMGS LL+AG+KG RFALPNA I
Sbjct: 61  YLYINSPGGSVSAGLAIFDTMNFVKADVQTIVLGMAASMGSFLLTAGQKGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+  ++RLN I  +  G+  E +E+  DRD+ M+A +A
Sbjct: 121 MIHQPLGGAQGQATEIEIAARHILDTRQRLNSILAERTGQPIEVIERDTDRDNYMTAEQA 180

Query: 196 CDWGVVDKVL 205
            ++G++D+V+
Sbjct: 181 KEYGLIDEVM 190


>gi|328956747|ref|YP_004374133.1| ATP-dependent Clp protease proteolytic subunit [Carnobacterium sp.
           17-4]
 gi|328673071|gb|AEB29117.1| ATP-dependent Clp protease proteolytic subunit [Carnobacterium sp.
           17-4]
          Length = 197

 Score =  228 bits (582), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 102/190 (53%), Positives = 146/190 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQ++RGER+YDIYSRLLK+RI+ ++G ++D +A  + AQLLFL+A++ +K+I
Sbjct: 1   MNLVPTVIEQSSRGERAYDIYSRLLKDRIIMLSGPVDDDLANAVIAQLLFLDAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG VTAG+AI+DTM FIK  + T  MG AASMGS LL+AG KG R+ALPNA I
Sbjct: 61  YIYINSPGGSVTAGLAIFDTMNFIKADVQTIAMGMAASMGSFLLTAGTKGKRYALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++IE  A+ I+  + RLN+I     G+  E +++  DRD+ MSA +A
Sbjct: 121 MIHQPSGGSQGQATEIEIAARHILNTRERLNKILSDRTGQPIEVIKRDTDRDNYMSAEDA 180

Query: 196 CDWGVVDKVL 205
             +G++D+++
Sbjct: 181 KAYGLIDEIM 190


>gi|33241265|ref|NP_876207.1| protease subunit of ATP-dependent Clp protease [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
 gi|67460520|sp|Q7V9L6|CLPP3_PROMA RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
           AltName: Full=Endopeptidase Clp 3
 gi|33238795|gb|AAQ00860.1| Protease subunit of ATP-dependent Clp protease [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
          Length = 216

 Score =  228 bits (582), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 103/191 (53%), Positives = 145/191 (75%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G++P V+EQ+ RGER++DIYSRLL+ERI+F+   + D +A  + AQ+LFLEAE+P+K+I 
Sbjct: 24  GVLPTVIEQSGRGERAFDIYSRLLRERIIFLGTDVNDQIADALVAQMLFLEAEDPEKDIQ 83

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAG+AIYDTMQ + P I T C G AASMG+ LL+ G KG R ALPN+RI+
Sbjct: 84  LYINSPGGSVTAGLAIYDTMQQVNPDIVTMCYGLAASMGAFLLAGGSKGKRLALPNSRIM 143

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA +IE  A++I+ +K  LN +  ++ G++ E++ +  DRDH +S  EA 
Sbjct: 144 IHQPLGGAQGQAVEIEIQAKEILFLKETLNNLLAEHTGQSLEKISEDTDRDHFLSPQEAV 203

Query: 197 DWGVVDKVLMS 207
           ++G++DKV+ S
Sbjct: 204 EYGLIDKVVNS 214


>gi|153209299|ref|ZP_01947334.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Coxiella
           burnetii 'MSU Goat Q177']
 gi|154706302|ref|YP_001424146.1| ATP-dependent Clp protease proteolytic subunit [Coxiella burnetii
           Dugway 5J108-111]
 gi|165924012|ref|ZP_02219844.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Coxiella
           burnetii RSA 334]
 gi|212212797|ref|YP_002303733.1| ATP-dependent Clp protease proteolytic subunit [Coxiella burnetii
           CbuG_Q212]
 gi|212219038|ref|YP_002305825.1| ATP-dependent Clp protease proteolytic subunit [Coxiella burnetii
           CbuK_Q154]
 gi|189082453|sp|A9KDS6|CLPP_COXBN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706447|sp|B6J8W4|CLPP_COXB1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706448|sp|B6J0W0|CLPP_COXB2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|120575415|gb|EAX32039.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Coxiella
           burnetii 'MSU Goat Q177']
 gi|154355588|gb|ABS77050.1| ATP-dependent endopeptidase clp proteolytic subunit [Coxiella
           burnetii Dugway 5J108-111]
 gi|165916535|gb|EDR35139.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Coxiella
           burnetii RSA 334]
 gi|212011207|gb|ACJ18588.1| ATP-dependent endopeptidase clp proteolytic subunit [Coxiella
           burnetii CbuG_Q212]
 gi|212013300|gb|ACJ20680.1| ATP-dependent endopeptidase clp proteolytic subunit [Coxiella
           burnetii CbuK_Q154]
          Length = 195

 Score =  228 bits (582), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 108/191 (56%), Positives = 148/191 (77%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQT+RGER+YDIYSRLLK+R++F+ GQ+EDHMA L  AQ+LFLE+ENP K+I+L
Sbjct: 4   LVPMVVEQTSRGERAYDIYSRLLKDRVIFLVGQVEDHMANLAIAQMLFLESENPNKDINL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VT+ MAIYDTMQF+KP + T C+GQAAS G+LLL+ G KG R  LP++ +++
Sbjct: 64  YINSPGGAVTSAMAIYDTMQFVKPDVRTLCIGQAASAGALLLAGGAKGKRHCLPHSSVMI 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQ  GG+ GQ +DI+ HA+   ++  +LN+I  K+ GK  E VEK  +RD+ ++  EA +
Sbjct: 124 HQVLGGYQGQGTDIQIHAKQTQRVSDQLNQILAKHTGKDIERVEKDTNRDYFLTPEEAVE 183

Query: 198 WGVVDKVLMSR 208
           +G++D +   R
Sbjct: 184 YGLIDSIFTER 194


>gi|123230949|emb|CAM15338.1| novel protein similar to human and mouse ClpP caseinolytic
           protease, ATP-dependent, proteolytic subunit homolog (E.
           coli) (CLPP) [Danio rerio]
          Length = 220

 Score =  228 bits (582), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 105/163 (64%), Positives = 137/163 (84%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P+VVEQT RGER+YDIYSRLL+ERI+ V G I+D +A+L+ AQLLFL++E+  K I +
Sbjct: 29  LIPIVVEQTGRGERAYDIYSRLLRERIICVMGPIDDSVASLVIAQLLFLQSESNNKPIHM 88

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G+AIYDTMQ+I  PIST+C+GQAASMGSLLL+AG  GMR +LPNARI++
Sbjct: 89  YINSPGGVVTSGLAIYDTMQYILNPISTWCVGQAASMGSLLLAAGTAGMRHSLPNARIMV 148

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           HQPSGG  GQA+DI   A++I+K+KR++N IY K+ G+  E +
Sbjct: 149 HQPSGGARGQATDIAIQAEEILKLKRQINNIYSKHTGQLLETI 191


>gi|164687878|ref|ZP_02211906.1| hypothetical protein CLOBAR_01523 [Clostridium bartlettii DSM
           16795]
 gi|164603153|gb|EDQ96618.1| hypothetical protein CLOBAR_01523 [Clostridium bartlettii DSM
           16795]
          Length = 217

 Score =  228 bits (582), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 107/193 (55%), Positives = 145/193 (75%), Gaps = 3/193 (1%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + +VP VV+QT  GERSYDI+SRLL +RI+F+  ++ D  A+++ AQLLFLEAE+P K+I
Sbjct: 18  MSVVPYVVQQTGNGERSYDIFSRLLCDRIIFLGEEVTDASASVVIAQLLFLEAEDPDKDI 77

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG AIYDTMQ +K  +ST C+G AAS GS LL+ G KG RFALPN++I
Sbjct: 78  YLYINSPGGSVTAGFAIYDTMQHVKCDVSTICIGLAASFGSFLLAGGAKGKRFALPNSQI 137

Query: 136 LLHQP---SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           ++HQP     G  GQA+DI+  A++++K K RLN I  +N GK+ EE+ +  DRD+ MSA
Sbjct: 138 MIHQPLIGGNGIQGQATDIKIVAENLLKTKERLNRILAENTGKSIEEIYRDTDRDNFMSA 197

Query: 193 SEACDWGVVDKVL 205
            EA D+G++D ++
Sbjct: 198 QEALDYGLIDSII 210


>gi|123969397|ref|YP_001010255.1| Clp protease proteolytic subunit [Prochlorococcus marinus str.
           AS9601]
 gi|126697184|ref|YP_001092070.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9301]
 gi|123199507|gb|ABM71148.1| Clp protease proteolytic subunit [Prochlorococcus marinus str.
           AS9601]
 gi|126544227|gb|ABO18469.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9301]
          Length = 214

 Score =  228 bits (581), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 104/196 (53%), Positives = 147/196 (75%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           +S +  +  VP V+EQ+ RGER++DIYSRLL+ERI+F+   I D ++  + AQLLFLEAE
Sbjct: 17  ESNNKTIAAVPTVIEQSGRGERAFDIYSRLLRERIIFLGTGINDQVSDSLVAQLLFLEAE 76

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           +P+K+I +YINSPGG VTAGMAIYDTMQ I P + T C G AASMG+ LLS G KG R A
Sbjct: 77  DPEKDIQIYINSPGGSVTAGMAIYDTMQQISPDVVTICFGVAASMGAFLLSGGAKGKRLA 136

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPN+RI++HQP GG  GQA +IE  A++I+ +K+ LN +  ++ G+  E++ +  +RD+ 
Sbjct: 137 LPNSRIMIHQPLGGAQGQAVEIEIQAKEILFLKKTLNSLLAEHTGQPLEKINEDTERDYF 196

Query: 190 MSASEACDWGVVDKVL 205
           +S SEA ++G++DKV+
Sbjct: 197 LSPSEAVEYGLIDKVI 212


>gi|313903081|ref|ZP_07836475.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Thermaerobacter subterraneus DSM 13965]
 gi|313466583|gb|EFR62103.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Thermaerobacter subterraneus DSM 13965]
          Length = 199

 Score =  228 bits (581), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 101/193 (52%), Positives = 148/193 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQTNRGER+YDIYSRLLK+RIVF+   I+D +A  + AQLLFL+ ++P ++I
Sbjct: 1   MNLVPYVIEQTNRGERAYDIYSRLLKDRIVFIGTPIDDVVANSVIAQLLFLQTDDPDRDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGG V +G+AIYDTMQ IKP ++T+C+G AASMG++LL+ G KG R+ALP++RI
Sbjct: 61  SIYINSPGGSVDSGLAIYDTMQHIKPDVATYCVGLAASMGAILLAGGTKGKRYALPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP     G A+D++ +A  ++K+++  NEI  K+ G+  E +E+  +RD  M+A EA
Sbjct: 121 MIHQPHSQVGGTAADVKIYADQLLKLRQVANEILAKHTGQPLERIERDTERDFFMTAEEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++D VL  R
Sbjct: 181 KEYGIIDHVLEPR 193


>gi|330836759|ref|YP_004411400.1| ATP-dependent Clp protease proteolytic subunit ClpP [Spirochaeta
           coccoides DSM 17374]
 gi|329748662|gb|AEC02018.1| ATP-dependent Clp protease proteolytic subunit ClpP [Spirochaeta
           coccoides DSM 17374]
          Length = 200

 Score =  228 bits (581), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 104/188 (55%), Positives = 147/188 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+VVEQ+  GERSYDI+SRLLK+RI+F+ G+I D  A L  AQLLFLE+E+P K+ISL
Sbjct: 10  LVPVVVEQSGIGERSYDIFSRLLKDRIIFLDGEINDVTADLAVAQLLFLESEDPSKDISL 69

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+AIYDT+Q+I   + T C+GQAASM +LLL++G  G RF LP+AR+++
Sbjct: 70  YINSPGGSVTAGLAIYDTIQYIHSDVQTICIGQAASMAALLLTSGAAGKRFILPSARVMI 129

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DI  HA+++ +IK+   +I+ ++ G   ++V+K L+RD+ ++A +A  
Sbjct: 130 HQPWGGVQGQATDIGIHAREMSRIKQLTVDIFARHTGHPADQVKKDLERDYFLAAPDAVA 189

Query: 198 WGVVDKVL 205
           +G+VD V+
Sbjct: 190 YGIVDHVM 197


>gi|262066529|ref|ZP_06026141.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium
           periodonticum ATCC 33693]
 gi|294783780|ref|ZP_06749104.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium
           sp. 1_1_41FAA]
 gi|291379763|gb|EFE87281.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium
           periodonticum ATCC 33693]
 gi|294480658|gb|EFG28435.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium
           sp. 1_1_41FAA]
          Length = 193

 Score =  228 bits (581), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 104/188 (55%), Positives = 143/188 (76%), Gaps = 2/188 (1%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P V++   + ER+YDIYSRLLK+RI+FV   I++++A  I AQLL+LE+E+P+K+I +YI
Sbjct: 4   PTVIDNNGKSERAYDIYSRLLKDRIIFVGTAIDENVANSIIAQLLYLESEDPEKDIIMYI 63

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VT GMAIYDTM +IKP + T C+GQAASMG+ LLS+G KG RFAL N+RI++HQ
Sbjct: 64  NSPGGSVTDGMAIYDTMNYIKPDVQTVCVGQAASMGAFLLSSGAKGKRFALENSRIMIHQ 123

Query: 140 P--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           P  SGG  GQA+DI  HA +++KIK RL E+  +N GKT E++    +RD+ +S+ EA  
Sbjct: 124 PLISGGLKGQATDISIHANELLKIKDRLAELLARNTGKTKEQILNDTERDNYLSSEEAVR 183

Query: 198 WGVVDKVL 205
           +G++D V 
Sbjct: 184 YGLIDSVF 191


>gi|237739236|ref|ZP_04569717.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           2_1_31]
 gi|229422844|gb|EEO37891.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           2_1_31]
          Length = 193

 Score =  228 bits (581), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 104/188 (55%), Positives = 143/188 (76%), Gaps = 2/188 (1%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P V++   + ER+YDIYSRLLK+RI+FV   I++++A  I AQLL+LE+E+P+K+I +YI
Sbjct: 4   PTVIDNNGKSERAYDIYSRLLKDRIIFVGTAIDENVANSIIAQLLYLESEDPEKDIIMYI 63

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VT GMAIYDTM +IKP + T C+GQAASMG+ LLS+G KG RFAL N+RI++HQ
Sbjct: 64  NSPGGSVTDGMAIYDTMNYIKPDVQTVCVGQAASMGAFLLSSGAKGKRFALENSRIMIHQ 123

Query: 140 P--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           P  SGG  GQA+DI  HA +++KIK RL E+  +N GKT E++    +RD+ +S+ EA  
Sbjct: 124 PLISGGLKGQATDISIHANELLKIKDRLAELLARNTGKTKEQILNDTERDNYLSSEEAVR 183

Query: 198 WGVVDKVL 205
           +G++D V 
Sbjct: 184 YGLIDSVF 191


>gi|317123029|ref|YP_004103032.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Thermaerobacter marianensis DSM 12885]
 gi|315593009|gb|ADU52305.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Thermaerobacter marianensis DSM 12885]
          Length = 199

 Score =  228 bits (581), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 102/193 (52%), Positives = 147/193 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQTNRGER+YDIYSRLLK+RIVF+   I+D +A  + AQLLFL+ ++P ++I
Sbjct: 1   MNLVPYVIEQTNRGERAYDIYSRLLKDRIVFIGTPIDDVVANSVIAQLLFLQTDDPDRDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGG V +G+AIYDTMQ IKP ++T+C+G AASMG++LL+ G KG R+ALP++RI
Sbjct: 61  SIYINSPGGSVDSGLAIYDTMQHIKPDVATYCVGLAASMGAILLAGGTKGKRYALPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP     G ASD++ +A  ++K+++  NEI  K+ G+  E +E+  +RD  M+A EA
Sbjct: 121 MIHQPHSQVGGTASDVKIYADQLLKLRQVANEILAKHTGQPLERIERDTERDFFMTAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D VL  R
Sbjct: 181 KAYGIIDHVLEPR 193


>gi|160879125|ref|YP_001558093.1| endopeptidase Clp [Clostridium phytofermentans ISDg]
 gi|160427791|gb|ABX41354.1| Endopeptidase Clp [Clostridium phytofermentans ISDg]
          Length = 193

 Score =  228 bits (581), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 104/192 (54%), Positives = 146/192 (76%), Gaps = 2/192 (1%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + +VP V+EQ +R ERSYDIYSRLLK+RI+F+ G++    A L+ AQLL+LEAE+ +K+I
Sbjct: 1   MSVVPYVIEQNDRSERSYDIYSRLLKDRIIFINGEVNHVSAGLVIAQLLYLEAEDSKKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +  G+AIYDTM+++K  +ST C+G AASMGS LL+ G KG RFALPNA I
Sbjct: 61  RLYINSPGGSIPDGLAIYDTMRYLKCDVSTTCIGMAASMGSFLLAGGTKGKRFALPNAEI 120

Query: 136 LLHQPSGGFS--GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           L+HQPSGG     QA+DI+  ++ I+  +RR+N+I  +N GK   ++EK  DRD+ M+A 
Sbjct: 121 LIHQPSGGIQAPAQATDIDIMSKHILNTRRRVNQILSENTGKEISQIEKDTDRDYYMTAE 180

Query: 194 EACDWGVVDKVL 205
           EA ++G++DK++
Sbjct: 181 EALNYGIIDKII 192


>gi|126659496|ref|ZP_01730629.1| ATP-dependent Clp protease proteolytic subunit [Cyanothece sp.
           CCY0110]
 gi|126619230|gb|EAZ89966.1| ATP-dependent Clp protease proteolytic subunit [Cyanothece sp.
           CCY0110]
          Length = 201

 Score =  228 bits (581), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 107/195 (54%), Positives = 149/195 (76%), Gaps = 1/195 (0%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MVVEQ+  GER++DIYSRLL+ERIVF+   ++D +A  I AQLLFL+AE+P+K+I +YIN
Sbjct: 1   MVVEQSGVGERAFDIYSRLLRERIVFLGTPVDDQVADSIVAQLLFLDAEDPEKDIQIYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGG V AG+AIYDTMQ I+P + T C G AASMG+ LLS G KG R ALP++RI++HQP
Sbjct: 61  SPGGSVYAGLAIYDTMQQIRPDVVTICFGLAASMGAFLLSGGTKGKRMALPSSRIMIHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            GG  GQA +IE  A++I+ IK+RLN++  ++ G+ Y+++    +RD  MSA EA D+G+
Sbjct: 121 LGGAQGQAVEIEIQAKEILYIKKRLNDMLAEHTGQPYDKIATDTERDFFMSAQEAVDYGL 180

Query: 201 VDKVLMSRIDIEEKS 215
           +DKV+ SR D+ + +
Sbjct: 181 IDKVI-SRPDLSDPT 194


>gi|75906770|ref|YP_321066.1| ATP-dependent Clp protease proteolytic subunit ClpP [Anabaena
           variabilis ATCC 29413]
 gi|110816454|sp|Q3MFR5|CLPP1_ANAVT RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|75700495|gb|ABA20171.1| ATP-dependent Clp protease proteolytic subunit ClpP [Anabaena
           variabilis ATCC 29413]
          Length = 204

 Score =  228 bits (581), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 103/187 (55%), Positives = 146/187 (78%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P+V+EQ+ RGER++DIYSRLL+ERI+F+  Q++ ++A LI AQLLFL+AE+P+K+I LY
Sbjct: 3   IPIVIEQSGRGERAFDIYSRLLRERIIFLGQQVDSNLANLIVAQLLFLDAEDPEKDIYLY 62

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAGM I+DTM+ I+P + T C G AASMG+ LLSAG KG R +LP++RI++H
Sbjct: 63  INSPGGSVTAGMGIFDTMKHIRPDVCTICTGLAASMGAFLLSAGTKGKRMSLPHSRIMIH 122

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA+DIE  A++I+  KRRLN+   ++ G+  E + +  +RD  MS  EA D+
Sbjct: 123 QPLGGAQGQATDIEIQAREILYHKRRLNDYLAEHTGQPIERIAEDTERDFFMSPDEARDY 182

Query: 199 GVVDKVL 205
           G++D+V+
Sbjct: 183 GLIDQVI 189


>gi|29654072|ref|NP_819764.1| ATP-dependent endopeptidase clp proteolytic subunit [Coxiella
           burnetii RSA 493]
 gi|161830533|ref|YP_001596950.1| ATP-dependent Clp protease proteolytic subunit [Coxiella burnetii
           RSA 331]
 gi|60389768|sp|Q83DJ2|CLPP_COXBU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|189082454|sp|A9NDG0|CLPP_COXBR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|29541338|gb|AAO90278.1| ATP-dependent endopeptidase clp proteolytic subunit [Coxiella
           burnetii RSA 493]
 gi|161762400|gb|ABX78042.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Coxiella
           burnetii RSA 331]
          Length = 195

 Score =  228 bits (581), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 108/191 (56%), Positives = 148/191 (77%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQT+RGER+YDIYSRLLK+R++F+ GQ+EDHMA L  AQ+LFLE+ENP K+I+L
Sbjct: 4   LVPMVVEQTSRGERAYDIYSRLLKDRVIFLVGQVEDHMANLAIAQMLFLESENPNKDINL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VT+ MAIYDTMQF+KP + T C+GQAAS G+LLL+ G KG R  LP++ +++
Sbjct: 64  YINSPGGAVTSAMAIYDTMQFVKPDVRTLCIGQAASAGALLLAGGAKGKRHCLPHSSVMI 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQ  GG+ GQ +DI+ HA+   ++  +LN+I  K+ GK  E VEK  +RD+ ++  EA +
Sbjct: 124 HQVLGGYQGQGTDIQIHAKQTQRVSDQLNQILAKHTGKDIERVEKDTNRDYFLTPEEAVE 183

Query: 198 WGVVDKVLMSR 208
           +G++D +   R
Sbjct: 184 YGLIDSIFKER 194


>gi|270290690|ref|ZP_06196914.1| Clp protease [Pediococcus acidilactici 7_4]
 gi|304386215|ref|ZP_07368548.1| ATP-dependent Clp protease proteolytic subunit [Pediococcus
           acidilactici DSM 20284]
 gi|270280750|gb|EFA26584.1| Clp protease [Pediococcus acidilactici 7_4]
 gi|304327572|gb|EFL94799.1| ATP-dependent Clp protease proteolytic subunit [Pediococcus
           acidilactici DSM 20284]
          Length = 197

 Score =  228 bits (581), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 101/190 (53%), Positives = 147/190 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQ++RGER+YDIYSRLLK+RI+ ++G I+D +A  I +QLLFL+A++ +K+I
Sbjct: 1   MNLVPTVIEQSSRGERAYDIYSRLLKDRIIMLSGPIDDDLANSIISQLLFLDAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVTAG+AIYDTM FIK  + T  MG AASM S+L S+G KG RFALP++ +
Sbjct: 61  YLYINSPGGVVTAGLAIYDTMNFIKADVQTIVMGMAASMASVLASSGTKGKRFALPHSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQ ++IE  A+ I+K ++ LN+I  +N G+  E++    +RD+ +SA +A
Sbjct: 121 MIHQPSGGAQGQQTEIEIAAEQILKTRKELNKILAENSGQPLEKINLDTERDNYLSAQDA 180

Query: 196 CDWGVVDKVL 205
            D+G++D ++
Sbjct: 181 VDYGLIDGIM 190


>gi|242206306|ref|XP_002469009.1| predicted protein [Postia placenta Mad-698-R]
 gi|220731874|gb|EED85714.1| predicted protein [Postia placenta Mad-698-R]
          Length = 200

 Score =  228 bits (581), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 113/195 (57%), Positives = 145/195 (74%), Gaps = 9/195 (4%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MV+EQT RGERSYDI+SRLL+ER++ + G I D  + L  AQLLFLEAE   K I LYIN
Sbjct: 1   MVIEQTGRGERSYDIFSRLLRERVIMLYGPIRDTDSALTVAQLLFLEAEETSKPIHLYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGG VTAG+AIYDT  ++  PI T+C+GQA SMGSLLL+AGEKG R ALP++ I++HQP
Sbjct: 61  SPGGSVTAGLAIYDT--YVSSPIHTYCVGQACSMGSLLLAAGEKGKRHALPHSTIMIHQP 118

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV-------EKTLDRDHIMSAS 193
           SGG SGQASDI  HA++I+++++ L  IY ++CGK  E V       E  L+RD+ M+A 
Sbjct: 119 SGGASGQASDIVIHAKEILRVRQLLTGIYQRHCGKDGESVEAGVQRFETALERDYFMTAQ 178

Query: 194 EACDWGVVDKVLMSR 208
           EA ++G+VD VL  R
Sbjct: 179 EAREFGIVDSVLEKR 193


>gi|88809960|ref|ZP_01125465.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. WH 7805]
 gi|88786150|gb|EAR17312.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. WH 7805]
          Length = 229

 Score =  228 bits (580), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 105/194 (54%), Positives = 147/194 (75%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G++P VVEQ+ RG+R++DIYSRLL+ERI+F+   ++D +A  + AQLLFLEAE+P+K+I 
Sbjct: 29  GVLPTVVEQSGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQLLFLEAEDPEKDIQ 88

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VTAG+AIYDTMQ + P + T C G AASMG+ LLS G KG R ALPNARI+
Sbjct: 89  VYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIM 148

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA DIE  A++I+ +K  LN +  ++ G+  +++ +  DRD+ +S SEA 
Sbjct: 149 IHQPMGGAQGQAVDIEIQAKEILFLKETLNGLMAEHTGQPLDKIAEDTDRDYFLSPSEAV 208

Query: 197 DWGVVDKVLMSRID 210
           D+G++D+V+ S  D
Sbjct: 209 DYGLIDRVVDSLKD 222


>gi|260654935|ref|ZP_05860423.1| Clp protease [Jonquetella anthropi E3_33 E1]
 gi|260630250|gb|EEX48444.1| Clp protease [Jonquetella anthropi E3_33 E1]
          Length = 195

 Score =  228 bits (580), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 105/190 (55%), Positives = 145/190 (76%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+EQT RGERSYDIYSRLLK+RI+F+  +I   +A  I AQ+LFLE++ P ++I LY
Sbjct: 6   IPYVIEQTGRGERSYDIYSRLLKDRIIFLGSEINSLVANSIVAQILFLESDQPDRDICLY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VT+G+AIYDTM+++K  IST  +G AASM S+LL+AG  G R ALPN+++++H
Sbjct: 66  INSPGGEVTSGLAIYDTMRYVKCDISTIVVGMAASMASILLAAGTPGKRIALPNSQVMIH 125

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQASD+E HA++I+K ++RLNEI   + G+    +E   DRDH +SA+EA  +
Sbjct: 126 QPMGGAYGQASDVEIHAREILKTRQRLNEILALHTGQPLSRIEVDTDRDHFLSAAEAQSY 185

Query: 199 GVVDKVLMSR 208
           G+VD+V+  R
Sbjct: 186 GLVDRVIEKR 195


>gi|22298052|ref|NP_681299.1| ATP-dependent Clp protease proteolytic subunit 1
           [Thermosynechococcus elongatus BP-1]
 gi|34222557|sp|Q8DLI2|CLPP1_THEEB RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|22294230|dbj|BAC08061.1| ATP-dependent Clp protease proteolytic subunit 1
           [Thermosynechococcus elongatus BP-1]
          Length = 229

 Score =  228 bits (580), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 111/194 (57%), Positives = 145/194 (74%), Gaps = 6/194 (3%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQ------IEDHMATLICAQLLFLEAENP 71
           +VPMVVEQ+ RGER++DIYSRLL+ERI+F+ G       I+D +A  I AQLLFL+AE+P
Sbjct: 28  IVPMVVEQSGRGERAFDIYSRLLRERIIFLGGGAGDRRGIDDAVADSIVAQLLFLDAEDP 87

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+I LYINSPGG VTAGMAIYDTM+ I+P + T C G AASMG+ LLS G  G R ALP
Sbjct: 88  EKDIYLYINSPGGSVTAGMAIYDTMKHIRPDVCTLCFGLAASMGAFLLSGGTPGKRMALP 147

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           NARI++HQP GG  GQA DIE  A++I+  KR+LNE+  ++ G+  E +E   +RD  MS
Sbjct: 148 NARIMIHQPLGGAQGQAVDIEIQAREILYHKRKLNELLSQHTGQPIERIEADTERDFFMS 207

Query: 192 ASEACDWGVVDKVL 205
           A EA  +G++D+V+
Sbjct: 208 AEEAKAYGLIDQVV 221


>gi|58700085|ref|ZP_00374620.1| Clp protease [Wolbachia endosymbiont of Drosophila ananassae]
 gi|58533399|gb|EAL57863.1| Clp protease [Wolbachia endosymbiont of Drosophila ananassae]
          Length = 142

 Score =  228 bits (580), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 101/142 (71%), Positives = 129/142 (90%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P+VVEQT+RGER+YDIYSRL+KERI+FVTG IED+MA++I AQLLFLE+ENP K+I
Sbjct: 1   MTLIPIVVEQTSRGERAYDIYSRLVKERIIFVTGPIEDNMASVIVAQLLFLESENPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG++IYDTMQ+I P +ST C+GQAASMGSLLL+AG KG R++LP++RI
Sbjct: 61  CMYINSPGGVVTAGLSIYDTMQYINPDVSTLCIGQAASMGSLLLAAGTKGKRYSLPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQD 157
           ++HQPSGG+ GQA+DIE HA +
Sbjct: 121 MIHQPSGGYHGQATDIEIHANE 142


>gi|229823184|ref|ZP_04449253.1| hypothetical protein GCWU000282_00482 [Catonella morbi ATCC 51271]
 gi|229787350|gb|EEP23464.1| hypothetical protein GCWU000282_00482 [Catonella morbi ATCC 51271]
          Length = 198

 Score =  228 bits (580), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 102/198 (51%), Positives = 150/198 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQ++RGER+YDIYSRLLK+RIV ++G I+D +A  + AQLLFL+A++P K+I
Sbjct: 1   MNLIPTVIEQSSRGERAYDIYSRLLKDRIVMLSGPIDDAVANSVIAQLLFLDAQDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG V+AG+AI+DTM FI   + T  +G AASMG+ LL+AGEKG R+ALPNA +
Sbjct: 61  YLYINSPGGSVSAGLAIFDTMNFINADVQTIVIGMAASMGAFLLAAGEKGKRYALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K +  LN+I  +  G+T + + +  DRD+ MSA EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKHILKTRDTLNKILAERTGQTLKVIARDTDRDNYMSAEEA 180

Query: 196 CDWGVVDKVLMSRIDIEE 213
             +G+VD ++ +  ++++
Sbjct: 181 VKYGLVDAIMTNSKNLKK 198


>gi|81301334|ref|YP_401542.1| ATP-dependent Clp protease proteolytic subunit ClpP [Synechococcus
           elongatus PCC 7942]
 gi|81170215|gb|ABB58555.1| ATP-dependent Clp protease proteolytic subunit ClpP [Synechococcus
           elongatus PCC 7942]
          Length = 244

 Score =  228 bits (580), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 108/189 (57%), Positives = 142/189 (75%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            +VP VVEQ+ RGER++DIYSRLL+ERIVF+   ++D +A  I AQLLFLEAE+P+K+I 
Sbjct: 40  AIVPTVVEQSGRGERAFDIYSRLLRERIVFLGTGVDDAVADSIVAQLLFLEAEDPEKDIQ 99

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGMAIYDTMQ + P ++T C G AASMG+ LLS G +G R ALP+ARI+
Sbjct: 100 LYINSPGGSVTAGMAIYDTMQQVAPDVATICFGLAASMGAFLLSGGAQGKRMALPSARIM 159

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA DIE  A++I+  K  LN++  ++ G+  E++E   DRD  MS  EA 
Sbjct: 160 IHQPLGGAQGQAVDIEIQAREILYHKSTLNDLLAQHTGQPLEKIEVDTDRDFFMSPEEAK 219

Query: 197 DWGVVDKVL 205
            +G++D+VL
Sbjct: 220 AYGLIDQVL 228


>gi|15677178|ref|NP_274331.1| ATP-dependent Clp protease, proteolytic subunit [Neisseria
           meningitidis MC58]
 gi|7226553|gb|AAF41687.1| ATP-dependent Clp protease, proteolytic subunit [Neisseria
           meningitidis MC58]
          Length = 176

 Score =  227 bits (579), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 104/171 (60%), Positives = 136/171 (79%), Gaps = 2/171 (1%)

Query: 40  LKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           +KERIVF+ G + D  A L+ AQLLFLE+ENP K+I  YINSPGG VTAGM+IYDTM FI
Sbjct: 1   MKERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFFYINSPGGSVTAGMSIYDTMNFI 60

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP--SGGFSGQASDIERHAQD 157
           KP +ST C+GQAASMG+ LLSAGEKG RFALPN+RI++HQP  SGG  GQASDIE HA++
Sbjct: 61  KPDVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMIHQPLISGGLGGQASDIEIHARE 120

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           ++KIK +LN +  K+C +   ++E+  DRD+ MSA EA ++G++D++L +R
Sbjct: 121 LLKIKEKLNRLMAKHCDRDLADLERDTDRDNFMSAEEAKEYGLIDQILENR 171


>gi|297621812|ref|YP_003709949.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Waddlia
           chondrophila WSU 86-1044]
 gi|297377113|gb|ADI38943.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Waddlia
           chondrophila WSU 86-1044]
          Length = 215

 Score =  227 bits (579), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 98/188 (52%), Positives = 150/188 (79%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P V+E T RGERS DI+SRLLK+RIVF+   I+DH+A ++ AQLLFL  E+P+K++++
Sbjct: 19  LTPYVIEDTGRGERSMDIFSRLLKDRIVFIGQDIDDHVANIVVAQLLFLRMEDPKKDVNI 78

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NS GG +T+G+AIYD ++++  P+ST+C+GQA+SMG+LLL+AG+KG R+ALPN+RI++
Sbjct: 79  YVNSRGGYITSGLAIYDVLKWLPCPVSTYCIGQASSMGALLLTAGDKGKRYALPNSRIMI 138

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  G ++DI   A++I+ +K+R+NEI  +  G+T E++ K L+RD  MS  EA +
Sbjct: 139 HQPSGGVGGTSADIALQAKEILFLKKRMNEILAECTGQTEEKIAKDLERDLFMSPEEAKE 198

Query: 198 WGVVDKVL 205
           +G++D ++
Sbjct: 199 YGLIDNII 206


>gi|119357822|ref|YP_912466.1| ATP-dependent Clp protease proteolytic subunit ClpP [Chlorobium
           phaeobacteroides DSM 266]
 gi|166201813|sp|A1BI15|CLPP_CHLPD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|119355171|gb|ABL66042.1| ATP-dependent Clp protease proteolytic subunit ClpP [Chlorobium
           phaeobacteroides DSM 266]
          Length = 227

 Score =  227 bits (579), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 101/191 (52%), Positives = 149/191 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMV+E + RGER++DI+SRLL+ERI+F+   I++H+A LI AQL+FLE+E+P+++I +
Sbjct: 28  LVPMVIETSGRGERAFDIFSRLLRERIIFLGSGIDEHVAGLIMAQLIFLESEDPERDIYI 87

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG V+AG+ IYDTMQ+I+P +ST C+G AASMG+ LL++G KG R +LP++RI++
Sbjct: 88  YVNSPGGSVSAGLGIYDTMQYIRPDVSTVCVGMAASMGAFLLASGTKGKRASLPHSRIMI 147

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQ SDI   A++I KI+R L EI   + GK  ++V +  +RD  M+A EA +
Sbjct: 148 HQPSGGAQGQESDIIIQAREIEKIRRLLEEILASHTGKDVQQVREDSERDRWMNAQEALE 207

Query: 198 WGVVDKVLMSR 208
           +G++D++   R
Sbjct: 208 YGIIDQIFEKR 218


>gi|119491296|ref|ZP_01623350.1| ATP-dependent Clp protease proteolytic subunit [Lyngbya sp. PCC
           8106]
 gi|119453460|gb|EAW34622.1| ATP-dependent Clp protease proteolytic subunit [Lyngbya sp. PCC
           8106]
          Length = 203

 Score =  227 bits (579), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 100/187 (53%), Positives = 145/187 (77%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+EQ+ RGER++DIYSRLL++RI+F+  Q+   +A LI AQ+LFL+A++P+K+I L
Sbjct: 1   MIPTVIEQSGRGERAFDIYSRLLRDRIIFLGQQVTADLANLIVAQMLFLDADDPEKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG+ IYDTM  I+P +ST C+G AASMG+ LLSAG KG R +LP++RI++
Sbjct: 61  YINSPGGSVSAGLGIYDTMNHIRPDVSTICIGLAASMGAFLLSAGAKGKRMSLPHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+ +K+RLN+    + G+    +E+  +RD  MSA EA D
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYLKKRLNQSLADHTGQPMSRIEQDTERDFFMSAQEAVD 180

Query: 198 WGVVDKV 204
           +G++D+V
Sbjct: 181 YGLIDQV 187


>gi|326803696|ref|YP_004321514.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651369|gb|AEA01552.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Aerococcus urinae ACS-120-V-Col10a]
          Length = 200

 Score =  227 bits (579), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 103/192 (53%), Positives = 146/192 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQ+ RGER+YDIYSRLLK+RI+ ++G++ D MA  + AQLLFL+A++  K+I
Sbjct: 1   MNLVPTVIEQSPRGERAYDIYSRLLKDRIIMLSGEVNDDMANSVIAQLLFLDAQDNDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG VTAGMAIYDTMQF+   + T   G AASMGS+LL  G KG R+ALP++ +
Sbjct: 61  YIYINSPGGSVTAGMAIYDTMQFVNADVVTIVTGLAASMGSILLIGGTKGKRYALPHSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQP GG  GQA++IE  A+ I++ K+ L EI  +  G+  ++VEK +DRD+ M+A EA
Sbjct: 121 LIHQPLGGVQGQATEIEISARHILQTKQTLKEIIAERSGQDIDKVEKDMDRDYWMTAKEA 180

Query: 196 CDWGVVDKVLMS 207
            D+G++D+++ S
Sbjct: 181 KDYGIIDEIMAS 192


>gi|56751593|ref|YP_172294.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus
           elongatus PCC 6301]
 gi|3023500|sp|O34125|CLPP2_SYNE7 RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|67460442|sp|Q5N1P6|CLPP3_SYNP6 RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
           AltName: Full=Endopeptidase Clp 3
 gi|15620530|gb|AAL03914.1|U30252_2 ClpP2 [Synechococcus elongatus PCC 7942]
 gi|2351823|gb|AAB68677.1| ATP-dependent Clp protease, proteolytic subunit [Synechococcus
           elongatus PCC 7942]
 gi|56686552|dbj|BAD79774.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus
           elongatus PCC 6301]
          Length = 240

 Score =  227 bits (579), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 108/189 (57%), Positives = 142/189 (75%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            +VP VVEQ+ RGER++DIYSRLL+ERIVF+   ++D +A  I AQLLFLEAE+P+K+I 
Sbjct: 36  AIVPTVVEQSGRGERAFDIYSRLLRERIVFLGTGVDDAVADSIVAQLLFLEAEDPEKDIQ 95

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGMAIYDTMQ + P ++T C G AASMG+ LLS G +G R ALP+ARI+
Sbjct: 96  LYINSPGGSVTAGMAIYDTMQQVAPDVATICFGLAASMGAFLLSGGAQGKRMALPSARIM 155

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA DIE  A++I+  K  LN++  ++ G+  E++E   DRD  MS  EA 
Sbjct: 156 IHQPLGGAQGQAVDIEIQAREILYHKSTLNDLLAQHTGQPLEKIEVDTDRDFFMSPEEAK 215

Query: 197 DWGVVDKVL 205
            +G++D+VL
Sbjct: 216 AYGLIDQVL 224


>gi|284929120|ref|YP_003421642.1| ATP-dependent Clp protease proteolytic subunit ClpP [cyanobacterium
           UCYN-A]
 gi|284809579|gb|ADB95284.1| ATP-dependent Clp protease proteolytic subunit ClpP [cyanobacterium
           UCYN-A]
          Length = 214

 Score =  227 bits (579), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 104/188 (55%), Positives = 143/188 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VPMVVEQ+  GER++DIYSRLL+ERI+F+   ++D MA  I AQLL+L++E+P+K+I L
Sbjct: 26  IVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPVDDQMANSIVAQLLYLDSEDPEKDIQL 85

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+AIYDTM+ I+P I T C G AASMG+ LLS G KG R ALP++RI++
Sbjct: 86  YINSPGGSVYAGLAIYDTMKQIRPDIVTICFGLAASMGAFLLSGGTKGKRMALPSSRIMI 145

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA DI   AQ+I+ IK+RLN +  ++ GK ++ +    +RD  MS+ EA +
Sbjct: 146 HQPLGGAQGQAVDIAIQAQEILYIKKRLNNMLSEHTGKPFDTIAADTERDFFMSSKEAVE 205

Query: 198 WGVVDKVL 205
           +G++DKV+
Sbjct: 206 YGLIDKVI 213


>gi|23004911|ref|ZP_00048001.1| COG0740: Protease subunit of ATP-dependent Clp proteases
           [Magnetospirillum magnetotacticum MS-1]
          Length = 177

 Score =  227 bits (579), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 103/158 (65%), Positives = 133/158 (84%)

Query: 51  IEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQ 110
           +ED  A+LI AQLLFLEAENP+KEIS YINSPGGVVT+G++IYDTMQFI+ P++T C+GQ
Sbjct: 13  LEDQGASLIVAQLLFLEAENPKKEISFYINSPGGVVTSGLSIYDTMQFIRCPVTTLCVGQ 72

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYV 170
           AASMGSLLL+AGE G RFALPNARI++HQPSGGF GQA+DI  HA++I  +K+RLNEIYV
Sbjct: 73  AASMGSLLLAAGEAGHRFALPNARIMVHQPSGGFQGQATDILIHAREIEALKKRLNEIYV 132

Query: 171 KNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           K+ G+ YE + + L+RD+ M+A  A ++G++D +L  R
Sbjct: 133 KHTGRDYETIHQALERDNFMTADAAKEFGLIDDILHKR 170


>gi|325911461|ref|ZP_08173873.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus iners UPII 143-D]
 gi|325476811|gb|EGC79965.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus iners UPII 143-D]
          Length = 194

 Score =  227 bits (578), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 101/191 (52%), Positives = 147/191 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQT RGER+YDIYSRLLK+R++ ++G+I D MA  I AQLLFL+A++  K+ISL
Sbjct: 2   LVPTVIEQTARGERAYDIYSRLLKDRVIMLSGEINDTMANSIIAQLLFLDAQDNTKDISL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+T+G+AI DTM FIK  +ST  +G AASM S+LL+AG KG RFALPN+ +L+
Sbjct: 62  YINSPGGVITSGLAIMDTMNFIKSDVSTIAIGMAASMASILLTAGTKGKRFALPNSTVLI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQ +DI+  A +I+K + ++N I  +  G+  E+++   +RD  ++A EA +
Sbjct: 122 HQPLGGAQGQQTDIQIAANEILKSREKINSILHETTGQPLEKIQADTERDKYLTAQEAKN 181

Query: 198 WGVVDKVLMSR 208
           +G++D++L+++
Sbjct: 182 YGLIDEILVNK 192


>gi|157414262|ref|YP_001485128.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9215]
 gi|157388837|gb|ABV51542.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9215]
          Length = 214

 Score =  227 bits (578), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 103/187 (55%), Positives = 143/187 (76%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP V+EQ+ RGER++DIYSRLL+ERI+F+   I D ++  + AQLLFLEAE+P+K+I +Y
Sbjct: 26  VPTVIEQSGRGERAFDIYSRLLRERIIFLGTGINDQVSDSLVAQLLFLEAEDPEKDIQIY 85

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAGMAIYDTMQ I P + T C G AASMG+ LLS G KG R ALPN+RI++H
Sbjct: 86  INSPGGSVTAGMAIYDTMQQISPDVVTICFGVAASMGAFLLSGGAKGKRLALPNSRIMIH 145

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA +IE  A++I+ +K+ LN +  ++ G+  E++ +  +RD+ +S SEA ++
Sbjct: 146 QPLGGAQGQAVEIEIQAKEILFLKKTLNSLLAEHTGQPLEKINEDTERDYFLSPSEAVEY 205

Query: 199 GVVDKVL 205
           G++DKV+
Sbjct: 206 GLIDKVI 212


>gi|323705911|ref|ZP_08117482.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534709|gb|EGB24489.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 194

 Score =  227 bits (578), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 110/193 (56%), Positives = 150/193 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQTNRGERSYDIYSRLLK+RIVF+  +I D  A+L+ AQLLFLE E+P K+I
Sbjct: 1   MSLVPIVVEQTNRGERSYDIYSRLLKDRIVFLGEEINDVSASLVVAQLLFLEGEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +T+  AIYDTMQ+IKP + T C+G AAS G+ LL+AG KG RF+LPN+ I
Sbjct: 61  WLYINSPGGSITSAFAIYDTMQYIKPDVVTMCVGMAASAGAFLLAAGAKGKRFSLPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+ HA+ I+K+K++LN+I  +  G+  E++E+  +RD  M   EA
Sbjct: 121 MIHQPLGGTQGQATDIKIHAERIIKMKQKLNKILSERTGQPLEKIERDTERDFFMDPEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D++L+ R
Sbjct: 181 KAYGLIDEILVKR 193


>gi|254525962|ref|ZP_05138014.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Prochlorococcus marinus str. MIT 9202]
 gi|221537386|gb|EEE39839.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Prochlorococcus marinus str. MIT 9202]
          Length = 214

 Score =  227 bits (578), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 103/187 (55%), Positives = 143/187 (76%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP V+EQ+ RGER++DIYSRLL+ERI+F+   I D ++  + AQLLFLEAE+P+K+I +Y
Sbjct: 26  VPTVIEQSGRGERAFDIYSRLLRERIIFLGTGINDQVSDSLVAQLLFLEAEDPEKDIQIY 85

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAGMAIYDTMQ I P + T C G AASMG+ LLS G KG R ALPN+RI++H
Sbjct: 86  INSPGGSVTAGMAIYDTMQQISPDVVTICFGVAASMGAFLLSGGAKGKRLALPNSRIMIH 145

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA +IE  A++I+ +K+ LN +  ++ G+  E++ +  +RD+ +S SEA ++
Sbjct: 146 QPLGGAQGQAVEIEIQAKEILFLKKTLNSLLAEHTGQPLEKINEDTERDYFLSPSEAVEY 205

Query: 199 GVVDKVL 205
           G++DKV+
Sbjct: 206 GLIDKVI 212


>gi|91203769|emb|CAJ71422.1| strongly similar to ATP-dependent Clp protease proteolytic subunit
           ClpP [Candidatus Kuenenia stuttgartiensis]
          Length = 224

 Score =  227 bits (578), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 104/197 (52%), Positives = 148/197 (75%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            VP VVE+T  GER YDI+SRLLK+RI+F+   IED +  L+ AQ+LFL+ EN  ++I++
Sbjct: 27  FVPYVVEKTGHGERHYDIFSRLLKDRIIFIGSAIEDTLTNLVIAQILFLQNENKNQDINI 86

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TAG+AIYDTMQF++  ++TFC+GQA SM ++LL+ G K  RF LP+ RI+L
Sbjct: 87  YINSPGGSITAGLAIYDTMQFVQCDVATFCIGQAYSMAAILLAGGTKNKRFGLPHTRIML 146

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  G A+DI   A++I+K+K+ LNEI VK+ G+  E +E  +DRD  MS+ +A +
Sbjct: 147 HQPWGGMRGTATDISIQAEEILKMKKCLNEILVKHTGQPLERIEADVDRDFYMSSHDAKE 206

Query: 198 WGVVDKVLMSRIDIEEK 214
           +G++D+V+ S  D +EK
Sbjct: 207 YGLIDEVIESLRDKKEK 223


>gi|194337396|ref|YP_002019190.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309873|gb|ACF44573.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 225

 Score =  227 bits (578), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 102/197 (51%), Positives = 151/197 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMV+E + RGER++DI+SRLL+ERI+F+   I++H+A LI AQL+FLE+E+P+++I +
Sbjct: 28  LVPMVIETSGRGERAFDIFSRLLRERIIFLGSGIDEHVAGLIMAQLIFLESEDPERDIYI 87

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG V+AG+ IYDTMQ+I+P +ST C+G AASMG+ LL++G KG R +LP++RI++
Sbjct: 88  YVNSPGGSVSAGLGIYDTMQYIRPEVSTVCVGMAASMGAFLLASGAKGKRASLPHSRIMI 147

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQ SDI   A++I KI+  L E+  K+ GK  +++ +  +RD  M+A EA D
Sbjct: 148 HQPSGGAQGQESDIVIQAREIEKIRTLLEELLAKHTGKDVKQIREDSERDRWMNAPEALD 207

Query: 198 WGVVDKVLMSRIDIEEK 214
           +G++D +   R   E+K
Sbjct: 208 YGIIDAIFEKRPAPEKK 224


>gi|296123572|ref|YP_003631350.1| endopeptidase Clp [Planctomyces limnophilus DSM 3776]
 gi|296015912|gb|ADG69151.1| Endopeptidase Clp [Planctomyces limnophilus DSM 3776]
          Length = 202

 Score =  226 bits (577), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 99/188 (52%), Positives = 146/188 (77%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+E+  R ER+ DIYSRLL++RI+ +   I+D +A  I AQLLFL+ E+ + +I L
Sbjct: 4   LVPYVIEKNGRDERAMDIYSRLLRDRIIILGSGIDDTVANTIVAQLLFLQFEDSKADIHL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TAGMAIYDTMQ++   ++T+C+GQ ASMG+LLL+AG  G R ALPN+RI++
Sbjct: 64  YINSPGGSITAGMAIYDTMQYLSCDVATYCLGQCASMGALLLTAGAAGKRHALPNSRIMI 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP  G  G A+++E HA++++++KRR+NEI +K+ G+TY+++E+  DRD+ M   EA  
Sbjct: 124 HQPLAGMQGTATELEIHAKEVLRVKRRMNEILLKHTGQTYDQIERDTDRDNFMMPDEAKS 183

Query: 198 WGVVDKVL 205
           +G++DK+L
Sbjct: 184 YGLIDKIL 191


>gi|312081179|ref|XP_003142917.1| hypothetical protein LOAG_07336 [Loa loa]
 gi|307761922|gb|EFO21156.1| hypothetical protein LOAG_07336 [Loa loa]
          Length = 218

 Score =  226 bits (577), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 109/193 (56%), Positives = 144/193 (74%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +PMVV+Q  R ER YDIYSRLLK+RIV V   I D +A  + AQLLFL+ E+ +  I++Y
Sbjct: 26  IPMVVDQDGRVERVYDIYSRLLKDRIVCVMTPINDQVAASVIAQLLFLQGESAKSTINMY 85

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           I  PGG VTAG+ IYDTMQ+I  P++T+C+GQAASMGSLLLSAG KGMR +LPNARI++H
Sbjct: 86  IMCPGGSVTAGLGIYDTMQYISAPVATWCIGQAASMGSLLLSAGAKGMRTSLPNARIMVH 145

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  GQASDI   A++I ++K RLN+IY  + G+  + +E+ LDRD  MS  EA  +
Sbjct: 146 QPSGGAEGQASDILIRAEEIGRLKTRLNKIYAIHTGQDIKIIEEALDRDRYMSPEEAKQF 205

Query: 199 GVVDKVLMSRIDI 211
           G++D++  S  D+
Sbjct: 206 GIIDQIEASAFDL 218


>gi|324529259|gb|ADY48999.1| ATP-dependent Clp protease proteolytic subunit 1 [Ascaris suum]
          Length = 218

 Score =  226 bits (577), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 104/191 (54%), Positives = 146/191 (76%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P+V++   R ER YDIYSRLLK+RI+ V   I D +A+ I AQLL+L+ E+ +  I++Y
Sbjct: 26  IPLVIDNDGRIERVYDIYSRLLKDRIICVMTPINDQVASAIIAQLLYLQGESSKSTINMY 85

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+ IYDTMQ+I  P++T+C+GQA+SMGSLLL AGEKGMR +LPN+RI++H
Sbjct: 86  INSPGGSVTAGLGIYDTMQYISAPVATWCIGQASSMGSLLLCAGEKGMRSSLPNSRIMVH 145

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  G ASD+   A++I ++++RLNE+Y K+ G+  + +E  LDRD  MSA EA  +
Sbjct: 146 QPSGGAEGTASDVIIRAEEIARLRKRLNELYAKHTGQDVKIIEAALDRDKYMSAEEAKAF 205

Query: 199 GVVDKVLMSRI 209
           G++D + +S I
Sbjct: 206 GLIDHIEVSAI 216


>gi|295425564|ref|ZP_06818253.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           amylolyticus DSM 11664]
 gi|295064740|gb|EFG55659.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           amylolyticus DSM 11664]
          Length = 195

 Score =  226 bits (577), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 100/191 (52%), Positives = 150/191 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQT RGER+YDIYSRLLK+RI+ + G+I D MA  I AQLLFL+A++  K+ISL
Sbjct: 2   LVPTVIEQTARGERAYDIYSRLLKDRIIMLHGEINDQMANSIIAQLLFLDAQDNTKDISL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+T+G+AI DTM FIK  +ST  +G AASM S+LL++G KG RFALPN+ +L+
Sbjct: 62  YINSPGGVITSGLAIMDTMNFIKSDVSTIAIGLAASMASILLTSGTKGKRFALPNSTVLI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQ +DI+  A +I+K ++++N+I  +  G+  ++++K  +RD+ ++A EA +
Sbjct: 122 HQPLGGAQGQQTDIQIAANEILKSRKKINKILHETTGQPLDKIQKDTERDNYLTAEEAKE 181

Query: 198 WGVVDKVLMSR 208
           +G++D++++++
Sbjct: 182 YGLIDEIMVNK 192


>gi|329770311|ref|ZP_08261696.1| ATP-dependent Clp protease proteolytic subunit [Gemella sanguinis
           M325]
 gi|328836764|gb|EGF86416.1| ATP-dependent Clp protease proteolytic subunit [Gemella sanguinis
           M325]
          Length = 215

 Score =  226 bits (577), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 102/190 (53%), Positives = 145/190 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT++GER+YDIYSRLLK+RI+ +  ++ D +A  I +QLLFLEA++ +K+I
Sbjct: 1   MNLIPTVIEQTSQGERAYDIYSRLLKDRIIILGSEVNDQVANSITSQLLFLEAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG VTAG AIYDTMQ IK  + T CMG AASMG+ LL+AG  G R+ALPNA +
Sbjct: 61  YFYINSPGGSVTAGFAIYDTMQHIKCDVVTICMGMAASMGAFLLAAGTIGKRYALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I++ + +LN+I     G+T + +E+  +RD+ +SA EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKHILRTREKLNKILADRTGQTIKAIERDTERDNYLSAEEA 180

Query: 196 CDWGVVDKVL 205
           C++G+VDKV+
Sbjct: 181 CEYGLVDKVM 190


>gi|307250531|ref|ZP_07532475.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306857424|gb|EFM89536.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 172

 Score =  226 bits (577), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 103/169 (60%), Positives = 134/169 (79%)

Query: 40  LKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           +KERI+F+TGQ+EDHMA LI AQ+LFLEAE+P+K+I LYINSPGGVVTAG+AIYDTM FI
Sbjct: 1   MKERIIFLTGQVEDHMANLIVAQMLFLEAEDPEKDIYLYINSPGGVVTAGLAIYDTMNFI 60

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
           KP ++T C GQA SMG+ LLS G KG RFALPNAR+++HQP GG  GQA+DI+  AQ+I+
Sbjct: 61  KPDVATLCTGQACSMGAFLLSGGAKGKRFALPNARVMIHQPLGGARGQATDIQIQAQEIL 120

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           K+K  L     ++ G+ +E+V    +RD+ MSA EA ++G++DKVL  R
Sbjct: 121 KLKEMLTRKMAEHSGQPFEKVAADTERDNFMSAVEAMEYGLIDKVLTHR 169


>gi|255944899|ref|XP_002563217.1| Pc20g06920 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587952|emb|CAP86021.1| Pc20g06920 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 258

 Score =  226 bits (577), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 106/199 (53%), Positives = 147/199 (73%), Gaps = 4/199 (2%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
            P V E       +YDI+SRL+KERI+ + GQ++D ++  I AQLLFLEA+NP K I LY
Sbjct: 49  TPFVTETVGGSWHTYDIFSRLMKERIICLNGQVDDTLSASIVAQLLFLEADNPSKPIHLY 108

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDTM +I  P+ST C+GQAASMGSLLL+ GE G R+ LP++ I++H
Sbjct: 109 INSPGGSVTAGLAIYDTMTYIASPVSTICVGQAASMGSLLLAGGEAGKRYCLPHSSIMVH 168

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK----TYEEVEKTLDRDHIMSASE 194
           QPSGG+ GQASDI  HA++I++++ +LNEIY ++       + +E+EK ++RD+ M A E
Sbjct: 169 QPSGGYFGQASDIAIHAKEILRVRTQLNEIYQRHLTSKKKLSLDEIEKLMERDYFMGAKE 228

Query: 195 ACDWGVVDKVLMSRIDIEE 213
           A + GVVD++L  R+  +E
Sbjct: 229 ALELGVVDEILDRRVQGKE 247


>gi|25019682|gb|AAN71768.1| ClpP2 [Synechococcus elongatus PCC 7942]
          Length = 302

 Score =  226 bits (576), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 108/189 (57%), Positives = 142/189 (75%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            +VP VVEQ+ RGER++DIYSRLL+ERIVF+   ++D +A  I AQLLFLEAE+P+K+I 
Sbjct: 98  AIVPTVVEQSGRGERAFDIYSRLLRERIVFLGTGVDDAVADSIVAQLLFLEAEDPEKDIQ 157

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGMAIYDTMQ + P ++T C G AASMG+ LLS G +G R ALP+ARI+
Sbjct: 158 LYINSPGGSVTAGMAIYDTMQQVAPDVATICFGLAASMGAFLLSGGAQGKRMALPSARIM 217

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA DIE  A++I+  K  LN++  ++ G+  E++E   DRD  MS  EA 
Sbjct: 218 IHQPLGGAQGQAVDIEIQAREILYHKSTLNDLLAQHTGQPLEKIEVDTDRDFFMSPEEAK 277

Query: 197 DWGVVDKVL 205
            +G++D+VL
Sbjct: 278 AYGLIDQVL 286


>gi|121705182|ref|XP_001270854.1| Clp protease, putative [Aspergillus clavatus NRRL 1]
 gi|119399000|gb|EAW09428.1| Clp protease, putative [Aspergillus clavatus NRRL 1]
          Length = 256

 Score =  226 bits (576), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 106/195 (54%), Positives = 146/195 (74%), Gaps = 4/195 (2%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
            P V E    G  +YDI+SRLLKERI+ + G++++ M+  I AQLLFLEA+NPQK I LY
Sbjct: 46  TPFVAETVGGGWHTYDIFSRLLKERIICLNGEVDESMSASIVAQLLFLEADNPQKPIHLY 105

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDTM +I  P+ST C+GQAASMGSLLL  G  G R+ LP++ I++H
Sbjct: 106 INSPGGSVTAGLAIYDTMTYITSPVSTICVGQAASMGSLLLCGGHPGKRYCLPHSSIMIH 165

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVK----NCGKTYEEVEKTLDRDHIMSASE 194
           QPSGG+ GQASDI  HA++I++++ +LN+IY +    N   + EE+EK ++RD+ M A+E
Sbjct: 166 QPSGGYFGQASDIAIHAKEILRVRSQLNKIYKRHLTGNKELSLEEIEKLMERDYFMGANE 225

Query: 195 ACDWGVVDKVLMSRI 209
           A + G+VD++L  R+
Sbjct: 226 ALEMGIVDEILDRRV 240


>gi|218247705|ref|YP_002373076.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
           sp. PCC 8801]
 gi|257060958|ref|YP_003138846.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
           sp. PCC 8802]
 gi|218168183|gb|ACK66920.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
           sp. PCC 8801]
 gi|256591124|gb|ACV02011.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
           sp. PCC 8802]
          Length = 229

 Score =  226 bits (576), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 105/188 (55%), Positives = 144/188 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VPMVVEQ+  GER++DIYSRLL+ERIVF+   ++D +A  I AQLLFL+AE+P+K+I L
Sbjct: 26  VVPMVVEQSGVGERAFDIYSRLLRERIVFLGTPVDDQVADSIVAQLLFLDAEDPEKDIQL 85

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+AIYDTMQ I+P ++T C G AASMG+ LL  G  G R ALP++RI++
Sbjct: 86  YINSPGGSVYAGLAIYDTMQQIRPDVATICFGLAASMGAFLLCGGAPGKRMALPSSRIMI 145

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA +IE  A++I+ IKRRLNE+   + G+ ++ + +  +RD  MSA EA +
Sbjct: 146 HQPLGGAQGQAVEIEIQAKEILYIKRRLNEMLASHTGQPFDTIAEDTERDFFMSAQEAKE 205

Query: 198 WGVVDKVL 205
           +G++DKV+
Sbjct: 206 YGLIDKVI 213


>gi|309320723|pdb|3P2L|A Chain A, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
           From Francisella Tularensis
 gi|309320724|pdb|3P2L|B Chain B, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
           From Francisella Tularensis
 gi|309320725|pdb|3P2L|C Chain C, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
           From Francisella Tularensis
 gi|309320726|pdb|3P2L|D Chain D, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
           From Francisella Tularensis
 gi|309320727|pdb|3P2L|E Chain E, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
           From Francisella Tularensis
 gi|309320728|pdb|3P2L|F Chain F, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
           From Francisella Tularensis
 gi|309320729|pdb|3P2L|G Chain G, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
           From Francisella Tularensis
          Length = 201

 Score =  226 bits (575), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 111/191 (58%), Positives = 146/191 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+E+T  GER++DIYSRLLKERIVF+ G++ DH A L+ AQLLFLE+E+P K+I  
Sbjct: 6   LVPTVIEKTAGGERAFDIYSRLLKERIVFLNGEVNDHSANLVIAQLLFLESEDPDKDIYF 65

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG  +YDT QFIKP +ST C+G AAS GSLLL+ G KG R++LP+++I +
Sbjct: 66  YINSPGGXVTAGXGVYDTXQFIKPDVSTICIGLAASXGSLLLAGGAKGKRYSLPSSQIXI 125

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQASDIE HA++I++IK RLN++   + G+  E + K  DRD+   A EA  
Sbjct: 126 HQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFXXADEAKA 185

Query: 198 WGVVDKVLMSR 208
           +G++D V+ SR
Sbjct: 186 YGLIDHVIESR 196


>gi|318043033|ref|ZP_07974989.1| ATP-dependent Clp protease proteolytic subunit ClpP [Synechococcus
           sp. CB0101]
          Length = 194

 Score =  226 bits (575), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 102/188 (54%), Positives = 143/188 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P VVEQ+ RGER++DIYSRLL+ERI+F+   I+D +A  + AQLLFLEAE+P+K+I +
Sbjct: 1   MLPTVVEQSGRGERAFDIYSRLLRERIIFLGTGIDDQVADALVAQLLFLEAEDPEKDIQI 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG VTAG+AIYDTMQ + P + T C G AASMG+ LLS G KG R ALPNARI++
Sbjct: 61  YVNSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA DIE  A++I+ +K  LN +  ++ G+  E++ +  DRD+ +S +EA  
Sbjct: 121 HQPLGGAQGQAVDIEIQAKEILYLKDTLNGLMAEHTGQPLEKIAEDTDRDYFLSPAEAVQ 180

Query: 198 WGVVDKVL 205
           +G++D+V+
Sbjct: 181 YGLIDRVV 188


>gi|78188367|ref|YP_378705.1| peptidase S14, ClpP [Chlorobium chlorochromatii CaD3]
 gi|90101406|sp|Q3ATL3|CLPP_CHLCH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|78170566|gb|ABB27662.1| ATP-dependent Clp protease proteolytic subunit ClpP [Chlorobium
           chlorochromatii CaD3]
          Length = 225

 Score =  226 bits (575), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 103/197 (52%), Positives = 151/197 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMV+E + RGER++DI+SRLL+ERI+F+   I++H+A LI AQL+FLE+E+P+++I +
Sbjct: 28  LVPMVIETSGRGERAFDIFSRLLRERIIFLGTGIDEHVAGLIMAQLIFLESEDPERDIYI 87

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG+ IYDTMQ+I+P IST C+G AASMG+ LL++G KG R +LP++RI++
Sbjct: 88  YINSPGGSVSAGLGIYDTMQYIRPEISTVCVGMAASMGAFLLASGNKGKRASLPHSRIMI 147

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQ +DI   A++I KI+R L E+  K+ G+  E+V +  +RD  M+  EA +
Sbjct: 148 HQPSGGAQGQETDIVIQAREIEKIRRLLEELLAKHTGQPVEKVREDSERDRWMNPQEALE 207

Query: 198 WGVVDKVLMSRIDIEEK 214
           +G++D +   R   E+K
Sbjct: 208 YGLIDAIFEKRPTPEKK 224


>gi|166363928|ref|YP_001656201.1| ATP-dependent protease [Microcystis aeruginosa NIES-843]
 gi|166086301|dbj|BAG01009.1| ATP-dependent protease [Microcystis aeruginosa NIES-843]
          Length = 200

 Score =  226 bits (575), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 103/188 (54%), Positives = 144/188 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+E T RGER++DIYSRLL+ERIVF+  ++   +A LI AQLLFLEAE+P+K+I L
Sbjct: 1   MIPTVIETTGRGERAFDIYSRLLRERIVFLGQEVTSDLANLIVAQLLFLEAEDPEKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG+ I+DTM  I+P +ST C+G AASMG+ LLSAG+ G R +LPN+RI++
Sbjct: 61  YINSPGGSVSAGLGIFDTMNQIRPDVSTICIGLAASMGAFLLSAGKPGKRMSLPNSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+ +K+ LNE    + GK  + + +  +RD  MSA EA D
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYLKQLLNEHLASHTGKPLDLIAEDTERDFFMSAEEALD 180

Query: 198 WGVVDKVL 205
           +G++D+V+
Sbjct: 181 YGLIDQVI 188


>gi|254432364|ref|ZP_05046067.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanobium sp.
           PCC 7001]
 gi|197626817|gb|EDY39376.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanobium sp.
           PCC 7001]
          Length = 235

 Score =  225 bits (574), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 103/189 (54%), Positives = 145/189 (76%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G++P VVEQ+ +GER++DIYSRLL+ERI+F+   I+D +A  + AQLLFLEAE+P+K+I 
Sbjct: 36  GVLPTVVEQSGKGERAFDIYSRLLRERIIFLGTGIDDAVADALVAQLLFLEAEDPEKDIQ 95

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VTAG+AIYDTMQ + P + T C G AASMG+ LLS G KG R ALP+ARI+
Sbjct: 96  IYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPSARIM 155

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA DIE  A++I+ +K  LN +  ++ G+  E++ +  DRD+ +S +EA 
Sbjct: 156 IHQPLGGAQGQAVDIEIQAKEILFLKDTLNGLMAEHTGQPLEKIAEDTDRDYFLSPAEAV 215

Query: 197 DWGVVDKVL 205
           D+G++D+V+
Sbjct: 216 DYGLIDRVV 224


>gi|148238406|ref|YP_001223793.1| protease subunit of ATP-dependent Clp protease [Synechococcus sp.
           WH 7803]
 gi|147846945|emb|CAK22496.1| Protease subunit of ATP-dependent Clp protease [Synechococcus sp.
           WH 7803]
          Length = 229

 Score =  225 bits (574), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 102/191 (53%), Positives = 146/191 (76%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G++P VVEQ+ RG+R++DIYSRLL+ERI+F+   ++D +A  + AQ+LFLEAE+P+K+I 
Sbjct: 29  GVLPTVVEQSGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDIQ 88

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VTAG+AIYDTMQ + P + T C G AASMG+ LLS G KG R ALPNARI+
Sbjct: 89  VYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIM 148

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA DIE  A++I+ +K  LN +  ++ G+  +++ +  DRD+ MS ++A 
Sbjct: 149 IHQPMGGAQGQAVDIEIQAKEILFLKETLNGLMAEHTGQPLDKIAEDTDRDNFMSPAQAV 208

Query: 197 DWGVVDKVLMS 207
           D+G++D+V+ S
Sbjct: 209 DYGLIDRVVDS 219


>gi|266623582|ref|ZP_06116517.1| Clp protease [Clostridium hathewayi DSM 13479]
 gi|288864626|gb|EFC96924.1| Clp protease [Clostridium hathewayi DSM 13479]
          Length = 195

 Score =  225 bits (574), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 103/194 (53%), Positives = 146/194 (75%), Gaps = 1/194 (0%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+E T++GERSYD++SRLLK+RI+F+  ++ D  A L  AQ+LFLEAE+P K+I
Sbjct: 1   MSLVPNVIETTSKGERSYDLFSRLLKDRIIFLGEEVNDETARLAVAQMLFLEAEDPSKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S YINSPGG +TAG+AIYDTM++I+  +ST C+G AAS G+ LL+ G KG RFALPNA I
Sbjct: 61  SFYINSPGGSITAGLAIYDTMRYIRCDVSTICIGLAASFGAFLLAGGTKGKRFALPNAEI 120

Query: 136 LLHQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           ++HQP+     G+A+DI+ +++ + + KRRLN I  +N G+T EE+ +  +RDH MSA E
Sbjct: 121 MIHQPAVEKIGGKATDIQIYSEKLQRDKRRLNRILAENTGRTEEEIWRDTERDHFMSAEE 180

Query: 195 ACDWGVVDKVLMSR 208
           A  +G++D V+  R
Sbjct: 181 AKAYGIIDTVMQKR 194


>gi|258592920|emb|CBE69229.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           [NC10 bacterium 'Dutch sediment']
          Length = 205

 Score =  225 bits (574), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 115/193 (59%), Positives = 153/193 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+PMVVEQT+RGER+YDI+SRLLK+RI+F+   I+D  + LI AQLLFLEAE+P K+I
Sbjct: 1   MQLIPMVVEQTSRGERAYDIFSRLLKDRILFIGTPIDDAESNLIIAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LY+NSPGG VTA +AIYDTMQ+IKP I T CMGQAAS  +LLL+AG KG R+ALP+ARI
Sbjct: 61  HLYVNSPGGSVTASLAIYDTMQYIKPAIETICMGQAASGAALLLAAGAKGKRYALPHARI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDI+  A++I+++++ L+ I   + G+  E +EK  DRD  MS SEA
Sbjct: 121 MIHQPYGGAQGQASDIQIQAKEILRMRQELDRIIADHTGQPLERIEKDSDRDFFMSPSEA 180

Query: 196 CDWGVVDKVLMSR 208
            D+G++D+V+ SR
Sbjct: 181 KDYGLIDEVIYSR 193


>gi|229085578|ref|ZP_04217813.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock3-44]
 gi|228697726|gb|EEL50476.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock3-44]
          Length = 198

 Score =  225 bits (574), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 109/194 (56%), Positives = 140/194 (72%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E  F+  +P VVEQT  GERSYDIYSRLLK+RIV +  +I D +A+ I AQLLFLEAE+ 
Sbjct: 2   EGFFMNAIPYVVEQTKLGERSYDIYSRLLKDRIVMIGSEINDQVASSIVAQLLFLEAEDA 61

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+I LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL AG KG RFALP
Sbjct: 62  EKDIFLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLAGAKGKRFALP 121

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+ I++HQP GG  GQA++IE  A+ I+K+K  +N+I     G+  E+V +  +RD+ M+
Sbjct: 122 NSEIMIHQPLGGVKGQATEIEITAKRILKLKHDINKIISDRTGQPIEKVAEDTERDYFMT 181

Query: 192 ASEACDWGVVDKVL 205
           A EA  +G+VD V+
Sbjct: 182 AEEAKAYGIVDAVI 195


>gi|119485223|ref|ZP_01619608.1| Peptidase S14, ClpP [Lyngbya sp. PCC 8106]
 gi|119457451|gb|EAW38576.1| Peptidase S14, ClpP [Lyngbya sp. PCC 8106]
          Length = 238

 Score =  225 bits (574), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 101/188 (53%), Positives = 144/188 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++PMVVEQ+  GER++D+YSRLL++RI+F+   I+D +A  + AQ+LFL+AE+P+K+I L
Sbjct: 36  MIPMVVEQSGMGERAFDLYSRLLRDRIIFLGTAIDDEIANAVSAQMLFLDAEDPEKDIQL 95

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM IYDT+Q ++P + T C G AASMG+ LLS+G KG R +LPN+R+++
Sbjct: 96  YINSPGGSVTAGMGIYDTIQQVRPDVVTICYGLAASMGAFLLSSGTKGKRMSLPNSRVMI 155

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA DIE  A++I+  KR LNEI  +N G+  E +E   +RD  MSA E+ +
Sbjct: 156 HQPLGGTQGQAVDIEIQAREILYHKRILNEILAQNTGQPIERIEVDTERDFFMSAEESKE 215

Query: 198 WGVVDKVL 205
           +G++D+V+
Sbjct: 216 YGLIDQVI 223


>gi|268611241|ref|ZP_06144968.1| ATP-dependent Clp protease, protease subunit [Ruminococcus
           flavefaciens FD-1]
          Length = 196

 Score =  225 bits (574), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 108/194 (55%), Positives = 147/194 (75%), Gaps = 2/194 (1%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVP VVEQT+RGERSYDI+SRLL +RI+ ++ Q+ D  A+L+ AQLL+LE+++P+K+IS
Sbjct: 3   SLVPYVVEQTSRGERSYDIFSRLLNDRIIMLSDQVNDTTASLVVAQLLYLESQDPEKDIS 62

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAG AIYDTM +IK  +ST C+G AASMG+ LLS+G KG R ALPN+ I+
Sbjct: 63  LYINSPGGSVTAGFAIYDTMNYIKCDVSTICIGMAASMGAFLLSSGAKGKRIALPNSEIM 122

Query: 137 LHQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           +HQP   GG  GQ +DI  HA+++ + + RL  I  +N GK+ EE+    +RD+ M+A E
Sbjct: 123 IHQPLIGGGLGGQQTDIMIHAKNMERTRNRLESILAENTGKSVEEIHAACERDNYMTAQE 182

Query: 195 ACDWGVVDKVLMSR 208
           A D+G++DKV+  R
Sbjct: 183 AMDYGLIDKVIEKR 196


>gi|256827324|ref|YP_003151283.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Cryptobacterium curtum DSM 15641]
 gi|256583467|gb|ACU94601.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Cryptobacterium curtum DSM 15641]
          Length = 207

 Score =  225 bits (573), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 105/192 (54%), Positives = 146/192 (76%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            L+P V+EQ+ RGERS+DIYSRLL ERIVF+   I+D++A  + AQLL LE+ +P+K+IS
Sbjct: 10  ALIPYVIEQSPRGERSFDIYSRLLNERIVFLGEAIDDNVANSVVAQLLHLESTDPEKDIS 69

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAG+AI DTM +I   +ST C+GQ ASM ++LLS G KG R+ALPN R++
Sbjct: 70  LYINSPGGSVTAGLAILDTMDYISCDVSTICIGQCASMAAVLLSNGTKGKRYALPNGRVM 129

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  GQ ++I   A++I+ I+ RLN I  KN G++ E +++  +RD+ MSA  A 
Sbjct: 130 IHQPSGGAQGQQTEIAIVAKEILYIRDRLNGILAKNTGQSLETIQQDTERDNFMSAEAAR 189

Query: 197 DWGVVDKVLMSR 208
           ++G+VD+V+ SR
Sbjct: 190 EYGLVDQVVTSR 201


>gi|269123536|ref|YP_003306113.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Streptobacillus moniliformis DSM 12112]
 gi|268314862|gb|ACZ01236.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Streptobacillus moniliformis DSM 12112]
          Length = 192

 Score =  225 bits (573), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 103/190 (54%), Positives = 143/190 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP ++E    GER+YDIYSRLLK+RI+F++G+I   MA  I AQLLFL A++ +K+I
Sbjct: 1   MSLVPYIIENEGSGERTYDIYSRLLKDRIIFLSGEINTEMANAIIAQLLFLNAQDKEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           ++YINSPGG+VTAG  IYDTM  I   + T C+G AASMG+ LLS+G KG RFALPN+ +
Sbjct: 61  TMYINSPGGMVTAGFGIYDTMNHISCDVVTVCIGMAASMGAFLLSSGTKGKRFALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+  A++I+K K +L EI  KN G+++E++    +RD+ +SA EA
Sbjct: 121 MIHQPLGGARGQATDIQIVAENILKTKHKLAEILSKNTGQSFEKIISDTERDNYLSAEEA 180

Query: 196 CDWGVVDKVL 205
             +G+VDKVL
Sbjct: 181 VAYGLVDKVL 190


>gi|116492258|ref|YP_803993.1| ATP-dependent Clp protease proteolytic subunit [Pediococcus
           pentosaceus ATCC 25745]
 gi|122266278|sp|Q03GX1|CLPP_PEDPA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|116102408|gb|ABJ67551.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pediococcus
           pentosaceus ATCC 25745]
          Length = 197

 Score =  225 bits (573), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 100/190 (52%), Positives = 146/190 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQ++RGER+YDIYSRLLK+RI+ ++G I+D +A  I +QLLFL+A++ +K+I
Sbjct: 1   MNLVPTVIEQSSRGERAYDIYSRLLKDRIIMLSGPIDDDLANSIISQLLFLDAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVTAG+AIYDTM FIK  + T  MG AASM S+L S+G KG RFALP++ +
Sbjct: 61  YLYINSPGGVVTAGLAIYDTMNFIKSDVQTIVMGMAASMASVLASSGTKGKRFALPHSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQ ++IE  A+ I+K ++ LN I  +N G+  E++    +RD+ +SA +A
Sbjct: 121 MIHQPSGGAQGQQTEIEIAAEQILKTRKELNTILAENSGQPLEKINIDTERDNYLSAQDA 180

Query: 196 CDWGVVDKVL 205
            ++G++D ++
Sbjct: 181 VEYGLIDGIM 190


>gi|297566268|ref|YP_003685240.1| endopeptidase Clp [Meiothermus silvanus DSM 9946]
 gi|296850717|gb|ADH63732.1| Endopeptidase Clp [Meiothermus silvanus DSM 9946]
          Length = 196

 Score =  225 bits (573), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 106/190 (55%), Positives = 145/190 (76%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP V+EQT RGER YDIYSRLLK+RI+F+   I+  +A  I AQ+LFL+A+N Q++I L
Sbjct: 2   VVPYVIEQTARGERVYDIYSRLLKDRIIFLGTPIDAAVANTIVAQMLFLDAQNSQQDIRL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YIN PGG VTAG+AIYDTMQF++ P+ST C+G AAS G++LL+AG  G R+ALP+A I++
Sbjct: 62  YINCPGGEVTAGLAIYDTMQFVRSPVSTICVGMAASFGAVLLAAGAPGKRYALPHANIMI 121

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQ SDI    +++ K KR LNEI  K+ G+  E+VE+  DRD+ MSA +A
Sbjct: 122 HQPWVSGGLGGQVSDIMIRVEELAKNKRLLNEILAKHTGQRVEKVERDTDRDYFMSAPQA 181

Query: 196 CDWGVVDKVL 205
            ++G++D+V+
Sbjct: 182 KEYGLIDQVV 191


>gi|254410742|ref|ZP_05024520.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Microcoleus
           chthonoplastes PCC 7420]
 gi|196182097|gb|EDX77083.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Microcoleus
           chthonoplastes PCC 7420]
          Length = 202

 Score =  225 bits (573), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 104/191 (54%), Positives = 146/191 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+EQ+ RGER++DIYSRLL+ERIVF+  Q++  +A LI AQLLFLEA++P+K+I L
Sbjct: 1   MIPTVIEQSGRGERAFDIYSRLLRERIVFLGQQVDSDLANLIVAQLLFLEADDPEKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM IYDTM  I+P + T C+G AASMG+ LLSAG KG R +LP++RI++
Sbjct: 61  YINSPGGSVTAGMGIYDTMNQIRPDVCTICVGLAASMGAFLLSAGAKGKRMSLPHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I+  K+RLN++  ++  +  + + +  +RD  MSA EA D
Sbjct: 121 HQPLGGAQGQASDIEIQAKEILYHKQRLNQLLAEHTDQPLDRIAEDTERDFFMSAEEAKD 180

Query: 198 WGVVDKVLMSR 208
           + ++D+V+  R
Sbjct: 181 YRLIDQVINRR 191


>gi|284053359|ref|ZP_06383569.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Arthrospira
           platensis str. Paraca]
 gi|291567407|dbj|BAI89679.1| ATP-dependent Clp protease proteolytic subunit [Arthrospira
           platensis NIES-39]
          Length = 200

 Score =  225 bits (573), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 101/191 (52%), Positives = 146/191 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+EQ+ RGER++DIYSRLL++RIVF+  Q+   +A LI AQLLFL+AE+P+K+I L
Sbjct: 1   MIPTVIEQSGRGERAFDIYSRLLRDRIVFLGTQVNSDVANLIVAQLLFLDAEDPEKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+ I+DTM  I+P + T C+G AASMG+ LLSAG KG R++LP++RI++
Sbjct: 61  YINSPGGGVNAGLGIFDTMNHIRPDVCTVCLGLAASMGAFLLSAGAKGKRYSLPHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+ +KR+LNE   K+  +    +E+  +RD  MSA +A +
Sbjct: 121 HQPLGGAQGQATDIEIQAREILYLKRQLNENLAKHTSQPLSRIEEDTERDFFMSAEDAVN 180

Query: 198 WGVVDKVLMSR 208
           +G++D+V+  R
Sbjct: 181 YGLIDQVISRR 191


>gi|332181312|gb|AEE17000.1| ATP-dependent Clp protease proteolytic subunit [Treponema
           brennaborense DSM 12168]
          Length = 204

 Score =  225 bits (573), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 103/191 (53%), Positives = 145/191 (75%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQT+ GERSYDI+SRLLK+RIVF+ G+I D  A LI AQ+LFL+++N +K+ISL
Sbjct: 8   LVPYVIEQTSNGERSYDIFSRLLKDRIVFIDGEITDMTADLIVAQILFLDSQNSEKDISL 67

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+AIYDT+Q +K    T C+GQAASM ++LL+ G  G R+ALP++R+++
Sbjct: 68  YINSPGGSVTAGLAIYDTIQSVKCDTQTICVGQAASMAAILLAGGTAGKRYALPSSRVMI 127

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A++I+++K+   + +  + GKT E V   ++RD  MS+ EA  
Sbjct: 128 HQPWGGVQGQASDIAIQAKEIIRLKKLTIDYFASHTGKTAETVAADMERDLYMSSDEALA 187

Query: 198 WGVVDKVLMSR 208
           +G+VD+++  R
Sbjct: 188 YGIVDQIMPRR 198


>gi|262192152|ref|ZP_06050312.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae CT
           5369-93]
 gi|262031941|gb|EEY50519.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae CT
           5369-93]
          Length = 167

 Score =  225 bits (573), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 100/165 (60%), Positives = 131/165 (79%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPI 103
           ++F+TGQ+EDHMA L+ AQLLFLE+ENP K+I LYINSPGG VTAGM+IYDTMQFIKP +
Sbjct: 1   MIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 60

Query: 104 STFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKR 163
           ST CMGQA SMG+ LL+ G  G R+ LPN+R+++HQP GGF GQASDI+ HAQ+I+ IK 
Sbjct: 61  STVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKN 120

Query: 164 RLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           +LN +  ++ G+  E +E+  DRD+ MSA +A ++G+VD VL  R
Sbjct: 121 KLNRLLAEHTGQPIEVIERDTDRDNFMSADQAVEYGLVDAVLKHR 165


>gi|261205022|ref|XP_002627248.1| ATP-dependent Clp protease proteolytic subunit [Ajellomyces
           dermatitidis SLH14081]
 gi|239592307|gb|EEQ74888.1| ATP-dependent Clp protease proteolytic subunit [Ajellomyces
           dermatitidis SLH14081]
 gi|239611539|gb|EEQ88526.1| ATP-dependent Clp protease proteolytic subunit [Ajellomyces
           dermatitidis ER-3]
          Length = 248

 Score =  225 bits (573), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 104/193 (53%), Positives = 146/193 (75%), Gaps = 2/193 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
            P V E    G  +YDI+SRLLKERIV + G++++ ++  I AQLLFLEA+NP+K I LY
Sbjct: 37  TPFVTETVGGGWHTYDIFSRLLKERIVCLNGEVDETLSASIVAQLLFLEADNPEKPIHLY 96

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+A+YDTM +I  P+ST C+GQAASMGSLLL  G  G R+ LP++ +++H
Sbjct: 97  INSPGGSVTAGLAVYDTMTYISAPVSTICVGQAASMGSLLLCGGHPGKRYCLPHSSVMVH 156

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK--TYEEVEKTLDRDHIMSASEAC 196
           QPSGG+ GQA+DI  HA++I++++R+LNEIY  +  K  + +E+EK ++RD+ M A EA 
Sbjct: 157 QPSGGYFGQATDIAIHAKEILRVRRQLNEIYKLHLTKEMSLDEIEKWMERDYFMGAREAL 216

Query: 197 DWGVVDKVLMSRI 209
           + G+VD++L  RI
Sbjct: 217 EMGIVDEILDRRI 229


>gi|110596915|ref|ZP_01385205.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Chlorobium
           ferrooxidans DSM 13031]
 gi|110341602|gb|EAT60062.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Chlorobium
           ferrooxidans DSM 13031]
          Length = 225

 Score =  225 bits (573), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 101/197 (51%), Positives = 153/197 (77%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMV+E + RGER++DI+SRLL+ERI+F+   I++H+A LI AQL+FLE+E+P+++I +
Sbjct: 28  LVPMVIETSGRGERAFDIFSRLLRERIIFLGNGIDEHVAGLIMAQLIFLESEDPERDIYI 87

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG+ IYDTMQ+I+P +ST C+G AASMG+ LL++G KG R +LP++RI++
Sbjct: 88  YINSPGGSVSAGLGIYDTMQYIRPDVSTVCVGMAASMGAFLLASGAKGKRASLPHSRIMI 147

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQ +DI   A++I KI++ L+E+  ++ GK  +++ +  +RD  M+A EA +
Sbjct: 148 HQPSGGAHGQETDIIIQAREIEKIRKLLDELLARHTGKDVKQIREDSERDRWMNAEEALE 207

Query: 198 WGVVDKVLMSRIDIEEK 214
           +G++D V   R   E+K
Sbjct: 208 YGIIDSVFEKRPMPEKK 224


>gi|329767857|ref|ZP_08259372.1| ATP-dependent Clp protease proteolytic subunit [Gemella haemolysans
           M341]
 gi|328838776|gb|EGF88373.1| ATP-dependent Clp protease proteolytic subunit [Gemella haemolysans
           M341]
          Length = 215

 Score =  225 bits (573), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 101/190 (53%), Positives = 144/190 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT++GER+YDIYSRLLK+RI+ +   + D +A  I +QLLFLEA++ +K+I
Sbjct: 1   MNLIPTVIEQTSQGERAYDIYSRLLKDRIIILGSDVNDQVANSITSQLLFLEAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG VTAG AIYDTMQ IK  + T CMG AASMG+ LL+AG  G R+ALPNA +
Sbjct: 61  YFYINSPGGSVTAGFAIYDTMQHIKCDVVTICMGMAASMGAFLLAAGTIGKRYALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I++ + +LN+I     G+T + +E+  +RD+ ++A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKHILRTREKLNKILADRTGQTIKAIERDTERDNYLTAEEA 180

Query: 196 CDWGVVDKVL 205
           C++G+VDKV+
Sbjct: 181 CEYGLVDKVM 190


>gi|158336585|ref|YP_001517759.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acaryochloris
           marina MBIC11017]
 gi|158306826|gb|ABW28443.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acaryochloris
           marina MBIC11017]
          Length = 238

 Score =  225 bits (573), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 110/195 (56%), Positives = 143/195 (73%), Gaps = 7/195 (3%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQ-------IEDHMATLICAQLLFLEAEN 70
           +VPMVVEQ+ RGER++DIYSRLL+ERIVF+ G        I+D +A  I AQLLFLE+EN
Sbjct: 28  IVPMVVEQSGRGERAFDIYSRLLRERIVFLGGGGSANGGGIDDAVADAIVAQLLFLESEN 87

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
           P+++I LYINSPGG +TAGMAIYDT+Q I+P + T C G AASMG+ LL AG  G R AL
Sbjct: 88  PEQDIYLYINSPGGSITAGMAIYDTIQHIRPDVCTICFGLAASMGAFLLCAGTAGKRMAL 147

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           PNARI++HQP GG  GQA DIE  A++I+ +K  LN +   + G+ +E +E   +RD  M
Sbjct: 148 PNARIMIHQPLGGAQGQAVDIEIRAKEILYLKNNLNHLMAGHTGQPFERIEADTERDFFM 207

Query: 191 SASEACDWGVVDKVL 205
           SA EA  +G++D+VL
Sbjct: 208 SAEEAQKYGLIDQVL 222


>gi|17231175|ref|NP_487723.1| ATP-dependent Clp protease proteolytic subunit [Nostoc sp. PCC
           7120]
 gi|75909809|ref|YP_324105.1| ATP-dependent Clp protease proteolytic subunit ClpP [Anabaena
           variabilis ATCC 29413]
 gi|21759070|sp|Q8YQX8|CLPP2_ANASP RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|17132816|dbj|BAB75382.1| ATP-dependent Clp protease proteolytic subunit [Nostoc sp. PCC
           7120]
 gi|75703534|gb|ABA23210.1| ATP-dependent Clp protease proteolytic subunit ClpP [Anabaena
           variabilis ATCC 29413]
          Length = 232

 Score =  225 bits (573), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 105/188 (55%), Positives = 143/188 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VPMVVEQ+  GER++DIYSRLL+ERI+F+   I+D +A  I AQLLFL+AE+ +K+I L
Sbjct: 29  IVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPIDDAVANTIVAQLLFLDAEDSEKDIQL 88

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AGMAIYDT+Q I+P + T C G AASMG+ LL+AG KG R +LP++RI++
Sbjct: 89  YINSPGGSVYAGMAIYDTIQQIRPDVVTICFGLAASMGAFLLTAGTKGKRMSLPDSRIMI 148

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA DIE  A++I+ IK +LN++   + G+  E +E   DRD  MSA EA +
Sbjct: 149 HQPLGGAQGQAIDIEIQAREILYIKAQLNQLLANHTGQPLERIEADTDRDFFMSAEEAKN 208

Query: 198 WGVVDKVL 205
           +G++D+V+
Sbjct: 209 YGLIDQVI 216


>gi|115311350|sp|Q3M726|CLPP3_ANAVT RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
           AltName: Full=Endopeptidase Clp 3
          Length = 214

 Score =  224 bits (572), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 105/188 (55%), Positives = 143/188 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VPMVVEQ+  GER++DIYSRLL+ERI+F+   I+D +A  I AQLLFL+AE+ +K+I L
Sbjct: 11  IVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPIDDAVANTIVAQLLFLDAEDSEKDIQL 70

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AGMAIYDT+Q I+P + T C G AASMG+ LL+AG KG R +LP++RI++
Sbjct: 71  YINSPGGSVYAGMAIYDTIQQIRPDVVTICFGLAASMGAFLLTAGTKGKRMSLPDSRIMI 130

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA DIE  A++I+ IK +LN++   + G+  E +E   DRD  MSA EA +
Sbjct: 131 HQPLGGAQGQAIDIEIQAREILYIKAQLNQLLANHTGQPLERIEADTDRDFFMSAEEAKN 190

Query: 198 WGVVDKVL 205
           +G++D+V+
Sbjct: 191 YGLIDQVI 198


>gi|295105822|emb|CBL03365.1| ATP-dependent Clp protease proteolytic subunit ClpP [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 211

 Score =  224 bits (572), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 108/207 (52%), Positives = 148/207 (71%), Gaps = 3/207 (1%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
           S D    L+P V+EQ+ RGERSYDIYSRLL +R++F+  QI+D++A  + AQLL LE+ +
Sbjct: 2   SYDTKAALIPYVIEQSPRGERSYDIYSRLLNDRVIFLGEQIDDNVANSVVAQLLHLESAD 61

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
           P+K+ISLYINSPGG VTAG+AI DTM FIK  +ST C+G+ ASM ++LLS G KG R  L
Sbjct: 62  PEKDISLYINSPGGSVTAGLAILDTMDFIKCDVSTICLGECASMAAVLLSNGAKGKRMCL 121

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           PN+ +L+HQPSGG  GQ ++I   A  ++K + RLN+I   N G+T E ++   +RD+ M
Sbjct: 122 PNSMVLIHQPSGGAQGQQTEIAIVADFMLKTRNRLNKILADNTGQTLETIQADTERDNYM 181

Query: 191 SASEACDWGVVDKVLMSR---IDIEEK 214
           +A EA  +G+VD++  SR    D EEK
Sbjct: 182 TAEEALAYGLVDRITTSRAAAADTEEK 208


>gi|148241165|ref|YP_001226322.1| protease subunit of ATP-dependent Clp protease [Synechococcus sp.
           RCC307]
 gi|147849475|emb|CAK26969.1| Protease subunit of ATP-dependent Clp protease [Synechococcus sp.
           RCC307]
          Length = 207

 Score =  224 bits (572), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 104/188 (55%), Positives = 140/188 (74%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP VVEQ+ RGER++DIYSRLL+ERI+F+   I+D +A  + AQLL+LEAE+P+KEI +
Sbjct: 18  LVPTVVEQSGRGERAFDIYSRLLRERIIFLGTGIDDAIADAVVAQLLYLEAEDPEKEIQI 77

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG VTAG+AIYDTMQ + P + T C G AASMG+ LLS G KG R ALPNARI++
Sbjct: 78  YVNSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIMI 137

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA DIE  A++I+ +K  LN +   + G+   +V +  DRD+ +S  EA  
Sbjct: 138 HQPLGGAQGQAVDIEIQAKEILYLKETLNGLMASHTGQDLAKVSEDTDRDYFLSPDEAVA 197

Query: 198 WGVVDKVL 205
           +G++D+V+
Sbjct: 198 YGLIDRVV 205


>gi|73748509|ref|YP_307748.1| ATP-dependent Clp protease proteolytic subunit [Dehalococcoides sp.
           CBDB1]
 gi|147669290|ref|YP_001214108.1| endopeptidase Clp [Dehalococcoides sp. BAV1]
 gi|289432557|ref|YP_003462430.1| endopeptidase Clp [Dehalococcoides sp. GT]
 gi|115311356|sp|Q3ZX82|CLPP_DEHSC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|189082455|sp|A5FRE5|CLPP_DEHSB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|73660225|emb|CAI82832.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Dehalococcoides sp. CBDB1]
 gi|146270238|gb|ABQ17230.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Dehalococcoides sp. BAV1]
 gi|288946277|gb|ADC73974.1| Endopeptidase Clp [Dehalococcoides sp. GT]
          Length = 200

 Score =  224 bits (572), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 104/188 (55%), Positives = 146/188 (77%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VPMV+E + RGER++DIYS LLKERI+F+  QI D +A L+ AQLLFL+ E+P K+ISL
Sbjct: 7   VVPMVIESSARGERAFDIYSLLLKERIIFLGSQINDQVANLVIAQLLFLDREDPDKDISL 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YI+SPGGV++AG+A+YDTMQ I+P +ST C+G AASM ++LL AG KG R+ALPNA I +
Sbjct: 67  YIHSPGGVISAGLAMYDTMQLIRPKVSTICVGVAASMATVLLCAGAKGKRYALPNATIHM 126

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQ  GG  GQASDIE  A++I++ +  L  I VK+ G+T E++    DRD+ +SA +A +
Sbjct: 127 HQAMGGAQGQASDIEIAAREIMRQQDILRNILVKHTGQTMEKIVHDSDRDYYLSAQQAVE 186

Query: 198 WGVVDKVL 205
           +G++D++L
Sbjct: 187 YGLIDEIL 194


>gi|304316359|ref|YP_003851504.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302777861|gb|ADL68420.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 194

 Score =  224 bits (572), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 109/193 (56%), Positives = 149/193 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQTNRGERSYDI+SRLLK+RIVF+  +I D  A+L+ AQLLFLE E+P K+I
Sbjct: 1   MSLVPIVVEQTNRGERSYDIFSRLLKDRIVFLGEEINDVSASLVVAQLLFLEGEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +T+  AIYDTMQ+IKP + T C+G AAS G+ LL+AG KG RF+LPN+ I
Sbjct: 61  WLYINSPGGSITSAFAIYDTMQYIKPDVVTMCVGMAASAGAFLLAAGAKGKRFSLPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+ HA+ I+K+K++LN+I  +  G+  E++E+  +RD  M   EA
Sbjct: 121 MIHQPLGGTQGQATDIKIHAERIIKMKQKLNKILSERTGQPLEKIERDTERDFFMDPEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D +L+ R
Sbjct: 181 KAYGLIDDILVRR 193


>gi|189345948|ref|YP_001942477.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Chlorobium
           limicola DSM 245]
 gi|189340095|gb|ACD89498.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Chlorobium
           limicola DSM 245]
          Length = 225

 Score =  224 bits (572), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 98/191 (51%), Positives = 151/191 (79%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMV+E + RGER++DI+SRLL+ERI+F+   I++H+A L+ AQL+FLE+E+P+++I +
Sbjct: 28  LVPMVIETSGRGERAFDIFSRLLRERIIFLGSGIDEHVAGLVMAQLIFLESEDPERDIFI 87

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG+ IYDTMQ+I+P I+T C+G AASMG+ LL++G KG R +LP++RI++
Sbjct: 88  YINSPGGSVSAGLGIYDTMQYIRPDIATVCVGMAASMGAFLLASGTKGKRASLPHSRIMI 147

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQ +DI   A++I KI++ L E+  K+ G+  +++ +  +RD  M+A+EA +
Sbjct: 148 HQPSGGAQGQETDIIIQAREIEKIRKLLEELLAKHTGRDVQQIREDSERDRWMNAAEALE 207

Query: 198 WGVVDKVLMSR 208
           +G++D+V   R
Sbjct: 208 YGIIDQVFEKR 218


>gi|282898110|ref|ZP_06306105.1| Peptidase S14, ClpP [Raphidiopsis brookii D9]
 gi|281197254|gb|EFA72155.1| Peptidase S14, ClpP [Raphidiopsis brookii D9]
          Length = 236

 Score =  224 bits (572), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 104/188 (55%), Positives = 143/188 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VPMVVEQ+  GER++DIYSRLL+ERI+F+   I+D++A  I AQLLFL+AE+P+K++ L
Sbjct: 33  IVPMVVEQSGMGERAFDIYSRLLRERIIFLGTAIDDNVANSIVAQLLFLDAEDPEKDVQL 92

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AGMAIYDT+Q I+P + T C G AASMG+ LL+AG  G R +LP++RI++
Sbjct: 93  YINSPGGSVYAGMAIYDTIQQIRPDVVTICFGLAASMGAFLLTAGTAGKRMSLPDSRIMI 152

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA DIE  A++I+ IK  LN++  K+ G+  E +E   +RD  MS  EA D
Sbjct: 153 HQPLGGAQGQAIDIEIQAREILYIKANLNQLMSKHTGQPLERIEADTERDFFMSPQEAKD 212

Query: 198 WGVVDKVL 205
           +G++D+V+
Sbjct: 213 YGLIDQVI 220


>gi|241888864|ref|ZP_04776170.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Gemella
           haemolysans ATCC 10379]
 gi|241864540|gb|EER68916.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Gemella
           haemolysans ATCC 10379]
          Length = 215

 Score =  224 bits (572), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 101/190 (53%), Positives = 144/190 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT++GER+YDIYSRLLK+RI+ +   + D +A  I +QLLFLEA++ +K+I
Sbjct: 1   MNLIPTVIEQTSQGERAYDIYSRLLKDRIIILGSDVNDQVANSITSQLLFLEAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG VTAG AIYDTMQ IK  + T CMG AASMG+ LL+AG  G R+ALPNA +
Sbjct: 61  YFYINSPGGSVTAGFAIYDTMQHIKCDVVTICMGMAASMGAFLLAAGTIGKRYALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I++ + +LN+I     G+T + +E+  +RD+ ++A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAARHILRTREKLNKILADRTGQTIKTIERDTERDNYLTAEEA 180

Query: 196 CDWGVVDKVL 205
           C++G+VDKV+
Sbjct: 181 CEYGLVDKVM 190


>gi|116256435|sp|Q3ANI8|CLPP1_SYNSC RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
          Length = 207

 Score =  224 bits (572), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 102/194 (52%), Positives = 146/194 (75%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G +P VVEQ+ RG+R++DIYSRLL+ERI+F+   ++D +A  + AQ+LFLEAE+P+K+I 
Sbjct: 7   GPLPTVVEQSGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDIQ 66

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VTAG+AIYDTMQ + P + T C G AASMG+ LLS G KG R ALPNARI+
Sbjct: 67  IYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIM 126

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA DIE  A++I+ +K  LN +  ++ G+  +++ +  DRD+ +S +EA 
Sbjct: 127 IHQPLGGAQGQAVDIEIQAKEILYLKETLNGLMAEHTGQPLDKISEDTDRDYFLSPAEAV 186

Query: 197 DWGVVDKVLMSRID 210
           ++G++D+V+ S  D
Sbjct: 187 EYGLIDRVVDSSGD 200


>gi|317495864|ref|ZP_07954227.1| Clp protease [Gemella moribillum M424]
 gi|316914041|gb|EFV35524.1| Clp protease [Gemella moribillum M424]
          Length = 212

 Score =  224 bits (572), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 102/190 (53%), Positives = 143/190 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT++GER+YDIYSRLLK+RI+ +   + D +A  I +QLLFLEA++ +K+I
Sbjct: 1   MNLIPTVIEQTSQGERAYDIYSRLLKDRIIILGSDVNDQVANSITSQLLFLEAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG VTAG AIYDTMQ IK  + T CMG AASMG+ LL+AG  G R+ALPNA +
Sbjct: 61  YFYINSPGGSVTAGFAIYDTMQHIKCDVVTICMGMAASMGAFLLAAGTIGKRYALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I++ + +LN+I     G+T + +E+  +RD+ +SA EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKHILRTREKLNKILADRTGQTIKAIERDTERDNYLSAEEA 180

Query: 196 CDWGVVDKVL 205
           C +G+VDKV+
Sbjct: 181 CAYGLVDKVM 190


>gi|282900541|ref|ZP_06308485.1| Peptidase S14, ClpP [Cylindrospermopsis raciborskii CS-505]
 gi|281194594|gb|EFA69547.1| Peptidase S14, ClpP [Cylindrospermopsis raciborskii CS-505]
          Length = 237

 Score =  224 bits (571), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 104/188 (55%), Positives = 143/188 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VPMVVEQ+  GER++DIYSRLL+ERI+F+   I+D++A  I AQLLFL+AE+P+K++ L
Sbjct: 34  IVPMVVEQSGMGERAFDIYSRLLRERIIFLGTAIDDNVANSIVAQLLFLDAEDPEKDVQL 93

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AGMAIYDT+Q I+P + T C G AASMG+ LL+AG  G R +LP++RI++
Sbjct: 94  YINSPGGSVYAGMAIYDTIQQIRPDVVTICFGLAASMGAFLLTAGTAGKRMSLPDSRIMI 153

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA DIE  A++I+ IK  LN++  K+ G+  E +E   +RD  MS  EA D
Sbjct: 154 HQPLGGAQGQAIDIEIQAREILYIKANLNQLMSKHTGQPLERIEADTERDFFMSPQEAKD 213

Query: 198 WGVVDKVL 205
           +G++D+V+
Sbjct: 214 YGLIDQVI 221


>gi|317968359|ref|ZP_07969749.1| ATP-dependent Clp protease proteolytic subunit ClpP [Synechococcus
           sp. CB0205]
          Length = 194

 Score =  224 bits (571), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 101/188 (53%), Positives = 143/188 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P VVEQ+ RG+R++DIYSRLL+ERI+F+   I+D +A  + AQLLFLEAE+P+K+I +
Sbjct: 1   MLPTVVEQSGRGDRAFDIYSRLLRERIIFLGSGIDDQVADAMVAQLLFLEAEDPEKDIQI 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG VTAG+AIYDTMQ + P + T C G AASMG+ LLS G KG R ALPNARI++
Sbjct: 61  YVNSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA DIE  A++I+ +K  LN +  ++ G+  E++ +  DRD+ +S +EA  
Sbjct: 121 HQPLGGAQGQAVDIEIQAKEILYLKETLNGLMSEHTGQPLEKIAEDTDRDYFLSPAEAVQ 180

Query: 198 WGVVDKVL 205
           +G++D+V+
Sbjct: 181 YGLIDRVV 188


>gi|33862212|ref|NP_893773.1| Clp protease proteolytic subunit [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|67460514|sp|Q7UZK7|CLPP3_PROMP RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
           AltName: Full=Endopeptidase Clp 3
 gi|33634430|emb|CAE20115.1| Clp protease proteolytic subunit [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 215

 Score =  224 bits (571), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 102/187 (54%), Positives = 141/187 (75%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP VVEQ+ RGER++DIYSRLL+ERI+F+   I D ++  + AQLLFLEAE+P K+I +Y
Sbjct: 25  VPTVVEQSGRGERAFDIYSRLLRERIIFLGTGINDQVSDSLVAQLLFLEAEDPHKDIQIY 84

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDTMQ I P + T C G AASMG+ LLS G KG R ALPN+RI++H
Sbjct: 85  INSPGGSVTAGLAIYDTMQQISPDVVTICFGVAASMGAFLLSGGAKGKRLALPNSRIMIH 144

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA +IE  A++I+ +K+ LN +  K+  ++ E++ +  +RD+ +S  EA ++
Sbjct: 145 QPLGGAQGQAVEIEIQAKEILFLKKTLNSLLAKHTNQSLEKINEDTERDYFLSPEEAVEY 204

Query: 199 GVVDKVL 205
           G++DKV+
Sbjct: 205 GLIDKVI 211


>gi|238484703|ref|XP_002373590.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Aspergillus
           flavus NRRL3357]
 gi|317140707|ref|XP_001818368.2| ATP-dependent Clp protease proteolytic subunit [Aspergillus oryzae
           RIB40]
 gi|220701640|gb|EED57978.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Aspergillus
           flavus NRRL3357]
          Length = 256

 Score =  224 bits (571), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 106/200 (53%), Positives = 150/200 (75%), Gaps = 4/200 (2%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
            P V E    G  +YDI+SRLLKERI+ + G++++ M+  I AQLLFLEA+NPQK I LY
Sbjct: 46  TPFVTETVGGGWHTYDIFSRLLKERIICLNGEVDETMSASIVAQLLFLEADNPQKPIHLY 105

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDTM +I  P+ST C+GQAASMGSLLL  G  G R+ LP++ I++H
Sbjct: 106 INSPGGSVTAGLAIYDTMTYIASPVSTICVGQAASMGSLLLCGGHPGKRYCLPHSSIMIH 165

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKN-CGK---TYEEVEKTLDRDHIMSASE 194
           QPSGG+ GQA+DI  HA++I++++ +LN+IY ++  GK   + +E+EK ++RD+ M A E
Sbjct: 166 QPSGGYFGQATDIAIHAKEILRVREQLNKIYKRHLTGKKELSLDEIEKLMERDYFMGAQE 225

Query: 195 ACDWGVVDKVLMSRIDIEEK 214
           A + G+VD++L  R+  +E+
Sbjct: 226 ALEMGIVDEILDRRVRSKEE 245


>gi|302391290|ref|YP_003827110.1| ATP-dependent Clp protease proteolytic subunit ClpP [Acetohalobium
           arabaticum DSM 5501]
 gi|302203367|gb|ADL12045.1| ATP-dependent Clp protease proteolytic subunit ClpP [Acetohalobium
           arabaticum DSM 5501]
          Length = 199

 Score =  224 bits (571), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 112/196 (57%), Positives = 156/196 (79%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMVVEQTNRGERSYDIYSRLLK+RIVF+   I D +A L+ AQLLFLEAE+P K+I 
Sbjct: 3   GLVPMVVEQTNRGERSYDIYSRLLKDRIVFIGSPINDEIANLVIAQLLFLEAEDPDKDIY 62

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VT+ +AIYDTMQ+IKP +ST  MG AAS G+LLL++G +G R+ALP +RI+
Sbjct: 63  IYINSPGGSVTSALAIYDTMQYIKPDVSTISMGLAASAGALLLASGAEGKRYALPYSRIM 122

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP+GG  G+A+DIE  AQ+I+ +++ LN I   + G+  E++E+ +DRD  MS+ +A 
Sbjct: 123 IHQPAGGAEGRAADIEIQAQEILDLRKILNNILADHTGQPLEKIEEDVDRDFFMSSEDAK 182

Query: 197 DWGVVDKVLMSRIDIE 212
           ++G++D+V+  + D++
Sbjct: 183 EYGIIDEVISRQEDLD 198


>gi|170078144|ref|YP_001734782.1| Clp protease [Synechococcus sp. PCC 7002]
 gi|169885813|gb|ACA99526.1| Clp protease [Synechococcus sp. PCC 7002]
          Length = 197

 Score =  224 bits (571), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 106/188 (56%), Positives = 142/188 (75%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VPMVVEQ+  GER++DIYSRLL+ERIVF+   I+D +A  + AQLLFL+AE+  K+I L
Sbjct: 5   VVPMVVEQSGMGERAFDIYSRLLRERIVFLGTAIDDTVADSVVAQLLFLDAEDADKDIQL 64

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AGMAIYDTMQ I+P + T C G AASMG+ LLS G KG R ALP++RI++
Sbjct: 65  YINSPGGSVYAGMAIYDTMQQIRPNVVTICYGIAASMGAFLLSGGTKGKRMALPSSRIMI 124

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA DIE  A++I+ IK +LN +   + G+ +++V +  +RD  MSA EAC 
Sbjct: 125 HQPLGGAQGQAVDIEIQAKEILYIKDKLNTLIADHTGQPFDKVAEDTERDFYMSAEEACQ 184

Query: 198 WGVVDKVL 205
           +G++D+V+
Sbjct: 185 YGLIDQVI 192


>gi|209523050|ref|ZP_03271607.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Arthrospira
           maxima CS-328]
 gi|209496637|gb|EDZ96935.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Arthrospira
           maxima CS-328]
          Length = 200

 Score =  224 bits (571), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 101/191 (52%), Positives = 146/191 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+EQ+ RGER++DIYSRLL++RIVF+  Q+   +A LI AQLLFL+AE+P+K+I L
Sbjct: 1   MIPTVIEQSGRGERAFDIYSRLLRDRIVFLGTQVNSDVANLIVAQLLFLDAEDPEKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+ I+DTM  I+P + T C+G AASMG+ LLSAG KG R++LP++RI++
Sbjct: 61  YINSPGGGVNAGLGIFDTMNHIRPDVCTVCLGLAASMGAFLLSAGAKGKRYSLPHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+ +KR+LNE   K+  +    +E+  +RD  MSA +A +
Sbjct: 121 HQPLGGAQGQATDIEIQAREILYLKRQLNENLAKHTEQPLSRIEEDTERDFFMSAEDAVN 180

Query: 198 WGVVDKVLMSR 208
           +G++D+V+  R
Sbjct: 181 YGLIDQVISRR 191


>gi|294054261|ref|YP_003547919.1| Endopeptidase Clp [Coraliomargarita akajimensis DSM 45221]
 gi|293613594|gb|ADE53749.1| Endopeptidase Clp [Coraliomargarita akajimensis DSM 45221]
          Length = 197

 Score =  224 bits (571), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 100/190 (52%), Positives = 144/190 (75%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V E+  R ER++DIYSRLL++RI+F+   I D +A  + AQ+LFL+ E+P+K+ISLY
Sbjct: 6   LPTVYEREGRTERAWDIYSRLLRDRIIFIGTPINDFVANAVIAQMLFLQMEDPKKDISLY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VT GMAIYDTM F++  + T+C+GQAASM +LLL+AG  G R+ALPN+R+++H
Sbjct: 66  INSPGGSVTDGMAIYDTMNFLQCDVVTYCVGQAASMATLLLAAGTPGKRYALPNSRVMMH 125

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP+GG +GQ SDI   A++I++ + R+N +   +  KT EEV    DRD  ++A +ACD+
Sbjct: 126 QPTGGATGQTSDISIAAKEILRWRERMNSLIASHTNKTAEEVAADSDRDFYLTAQDACDY 185

Query: 199 GVVDKVLMSR 208
           G+VDKV+ S+
Sbjct: 186 GLVDKVIESK 195


>gi|159028981|emb|CAO87442.1| clpP1 [Microcystis aeruginosa PCC 7806]
          Length = 199

 Score =  224 bits (571), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 102/188 (54%), Positives = 144/188 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+E T RGER++DIYSRLL+ERIVF+  ++   +A LI AQLLFLEAE+P+K+I L
Sbjct: 1   MIPTVIETTGRGERAFDIYSRLLRERIVFLGQEVTSDLANLIVAQLLFLEAEDPEKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG+ I+DTM  I+P +ST C+G AASMG+ LLSAG+ G R +LPN+RI++
Sbjct: 61  YINSPGGSVSAGLGIFDTMNQIRPDVSTICIGLAASMGAFLLSAGKPGKRMSLPNSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+ +K+ LN+    + GK  + + +  +RD  MSA EA D
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYLKQLLNQHLASHTGKPLDLIAEDTERDFFMSAEEALD 180

Query: 198 WGVVDKVL 205
           +G++D+V+
Sbjct: 181 YGLIDQVI 188


>gi|282899048|ref|ZP_06307029.1| Peptidase S14, ClpP [Cylindrospermopsis raciborskii CS-505]
 gi|281195964|gb|EFA70880.1| Peptidase S14, ClpP [Cylindrospermopsis raciborskii CS-505]
          Length = 201

 Score =  224 bits (570), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 100/188 (53%), Positives = 147/188 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQ+ RGER++DIYSRLL+ERIVF+  Q++  +A LI AQLLFL++E+P+K+I +
Sbjct: 1   MIPIVIEQSGRGERAFDIYSRLLRERIVFLGQQVDSSLANLIVAQLLFLDSEDPEKDIYM 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM I+DTM+ I+P + T C G AASMG+ LLSAG KG R +LP++RI++
Sbjct: 61  YINSPGGSVTAGMGIFDTMKNIRPNVCTICTGLAASMGAFLLSAGTKGKRMSLPHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+  KR+LNE   ++ G+ ++ + +  +RD  MS  EA +
Sbjct: 121 HQPLGGAQGQATDIEIQAREILYHKRKLNEYLAEHTGQPFDRIAEDTERDFFMSPQEARE 180

Query: 198 WGVVDKVL 205
           +G++D+V+
Sbjct: 181 YGLIDQVI 188


>gi|159904323|ref|YP_001551667.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9211]
 gi|159889499|gb|ABX09713.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9211]
          Length = 200

 Score =  224 bits (570), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 101/191 (52%), Positives = 144/191 (75%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G++P VVEQ+ RG+R++DIYSRLL+ERI+F+   + D +A  + AQ+LFLEAE+P+K+I 
Sbjct: 8   GVLPTVVEQSGRGDRAFDIYSRLLRERIIFLGTDVNDQVADALVAQMLFLEAEDPEKDIQ 67

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAG+AIYDTMQ + P + T C G AASMG+ LLS G KG R +LPN+RI+
Sbjct: 68  LYINSPGGSVTAGLAIYDTMQQVTPDVVTICYGLAASMGAFLLSGGTKGKRVSLPNSRIM 127

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA +IE  A++I+ +K  LN +  ++ G+  +++ +  DRDH +S  EA 
Sbjct: 128 IHQPLGGAQGQAVEIEIQAKEILFLKETLNGLLSEHTGQPIDKIAEDTDRDHFLSPQEAV 187

Query: 197 DWGVVDKVLMS 207
           ++G++DKV+ S
Sbjct: 188 EYGLIDKVINS 198


>gi|78183646|ref|YP_376080.1| peptidase S14, ClpP [Synechococcus sp. CC9902]
 gi|124013821|sp|Q3B0U1|CLPP2_SYNS9 RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|78167940|gb|ABB25037.1| ATP-dependent Clp protease proteolytic subunit ClpP [Synechococcus
           sp. CC9902]
          Length = 207

 Score =  223 bits (569), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 101/194 (52%), Positives = 146/194 (75%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G +P VVEQ+ RG+R++DIYSRLL+ERI+F+   ++D +A  + AQ+LFLEAE+P+K+I 
Sbjct: 7   GPLPTVVEQSGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDIQ 66

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+NSPGG VTAG+AIYDTMQ + P + T C G AASMG+ LLS G KG R ALPNARI+
Sbjct: 67  IYVNSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIM 126

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA DIE  A++I+ +K  LN +  ++ G+  +++ +  DRD+ +S +EA 
Sbjct: 127 IHQPLGGAQGQAVDIEIQAKEILFLKETLNGLLAEHTGQPLDKISEDTDRDYFLSPAEAV 186

Query: 197 DWGVVDKVLMSRID 210
           ++G++D+V+ S  D
Sbjct: 187 EYGLIDRVVDSSGD 200


>gi|78211620|ref|YP_380399.1| ATP-dependent Clp protease proteolytic subunit ClpP [Synechococcus
           sp. CC9605]
 gi|260436691|ref|ZP_05790661.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. WH 8109]
 gi|78196079|gb|ABB33844.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. CC9605]
 gi|260414565|gb|EEX07861.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. WH 8109]
          Length = 224

 Score =  223 bits (569), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 102/194 (52%), Positives = 146/194 (75%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G +P VVEQ+ RG+R++DIYSRLL+ERI+F+   ++D +A  + AQ+LFLEAE+P+K+I 
Sbjct: 24  GPLPTVVEQSGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDIQ 83

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VTAG+AIYDTMQ + P + T C G AASMG+ LLS G KG R ALPNARI+
Sbjct: 84  IYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIM 143

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA DIE  A++I+ +K  LN +  ++ G+  +++ +  DRD+ +S +EA 
Sbjct: 144 IHQPLGGAQGQAVDIEIQAKEILYLKETLNGLMAEHTGQPLDKISEDTDRDYFLSPAEAV 203

Query: 197 DWGVVDKVLMSRID 210
           ++G++D+V+ S  D
Sbjct: 204 EYGLIDRVVDSSGD 217


>gi|89100779|ref|ZP_01173633.1| ATP-dependent Clp protease, proteolytic subunit [Bacillus sp. NRRL
           B-14911]
 gi|89084537|gb|EAR63684.1| ATP-dependent Clp protease, proteolytic subunit [Bacillus sp. NRRL
           B-14911]
          Length = 193

 Score =  223 bits (569), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 102/188 (54%), Positives = 140/188 (74%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+EQ++RGERSYDIYSRLLK+RI+ +  +I DH+A  + AQLLFL A+ P K+ISLY
Sbjct: 4   IPYVIEQSSRGERSYDIYSRLLKDRIIMIGEEINDHVANSVIAQLLFLAADAPDKDISLY 63

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TAG AIYDTMQ+IKP + T C G AAS G++LL AG KG R +LPN+ I++H
Sbjct: 64  INSPGGSTTAGFAIYDTMQYIKPDVRTICTGMAASFGAMLLLAGTKGKRCSLPNSEIMIH 123

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA++IE  A+ I+K++  +N I  +  G+  E+V +  DRD+ MSA EA ++
Sbjct: 124 QPLGGARGQATEIEISAKRILKLREHINGIISEKTGQPVEKVARDTDRDYFMSAEEAKEY 183

Query: 199 GVVDKVLM 206
           G++D ++ 
Sbjct: 184 GIIDTIIF 191


>gi|281356561|ref|ZP_06243052.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Victivallis
           vadensis ATCC BAA-548]
 gi|281316688|gb|EFB00711.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Victivallis
           vadensis ATCC BAA-548]
          Length = 201

 Score =  223 bits (569), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 104/188 (55%), Positives = 143/188 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQT +GER++DIYSRLLK+RI+ +   I+D +A LI AQLLFL+AE+P+K+I L
Sbjct: 7   LVPMVVEQTGQGERAFDIYSRLLKDRIILLGTPIDDDVANLIVAQLLFLQAEDPKKDIDL 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+AIYDTMQ +   + T+C+GQ ASMG++LL AG  G RFALPN+RI++
Sbjct: 67  YINSPGGSVTAGLAIYDTMQILSCDVKTYCVGQCASMGAVLLCAGAAGKRFALPNSRIMI 126

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  G A+D++   ++I ++K  LN I   + G+  +++EK  +RD  M A +A  
Sbjct: 127 HQPWGGAQGTAADMDIQVKEIQRLKAMLNGILSSHSGQPIKKIEKDTERDFFMGAEDAVK 186

Query: 198 WGVVDKVL 205
           +G+VDKV+
Sbjct: 187 YGLVDKVV 194


>gi|291520781|emb|CBK79074.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Coprococcus
           catus GD/7]
          Length = 194

 Score =  223 bits (569), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 105/193 (54%), Positives = 143/193 (74%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQ++RGER++DIYSRLLK+RI+F+  ++ D  A LI +QLLFLE+E+P K+I
Sbjct: 1   MSLVPTVIEQSSRGERAFDIYSRLLKDRIIFLGEEVTDVSANLIVSQLLFLESEDPGKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG V+AGMAIYDTMQFIK  +ST CMG AASMG+ LL+ G  G R ALP++ I
Sbjct: 61  QMYINSPGGSVSAGMAIYDTMQFIKCDVSTICMGMAASMGAFLLAGGTPGKRLALPHSTI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I+  A  I   KR LNE+   N  +  E++    +RD+ MSA EA
Sbjct: 121 MIHQPSGGAQGQATEIQIVADRIQYTKRMLNELLAANTHQPLEKIAADTERDYYMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++D V+  R
Sbjct: 181 KNYGLIDAVVTKR 193


>gi|307151649|ref|YP_003887033.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
           sp. PCC 7822]
 gi|306981877|gb|ADN13758.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
           sp. PCC 7822]
          Length = 228

 Score =  223 bits (569), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 103/188 (54%), Positives = 145/188 (77%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP+V+EQ+  GER++DIYSRLL+ERIVF+   I+D++A  I AQLL+L+AE+P+K+I L
Sbjct: 26  IVPVVIEQSGMGERAFDIYSRLLRERIVFLGTAIDDNVADSIVAQLLYLDAEDPEKDIQL 85

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+AIYDTMQ I+P + T C G AASMG+ LLS G KG R ALP+ARI++
Sbjct: 86  YINSPGGSVYAGLAIYDTMQQIRPDVVTICFGLAASMGAFLLSGGTKGKRMALPSARIMI 145

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA +I+  A++I+ IK+RLN +  ++ G+ YE + +  +RD  MS  +A D
Sbjct: 146 HQPIGGAQGQAVEIDIQAKEILYIKQRLNSLLAEHTGQPYERIAEDTERDFYMSVHDAKD 205

Query: 198 WGVVDKVL 205
           +G++D+V+
Sbjct: 206 YGLIDQVI 213


>gi|16332068|ref|NP_442796.1| ATP-dependent Clp protease proteolytic subunit [Synechocystis sp.
           PCC 6803]
 gi|2493737|sp|Q59993|CLPP2_SYNY3 RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|1001377|dbj|BAA10867.1| ATP-dependent Clp protease proteolytic subunit [Synechocystis sp.
           PCC 6803]
          Length = 226

 Score =  223 bits (568), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 107/198 (54%), Positives = 152/198 (76%), Gaps = 1/198 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VPMVVEQ+  GER++DIYSRLL+ERI+F+   ++D +A  I AQLLFL+AE+P+K+I L
Sbjct: 23  VVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPVDDQVADSIVAQLLFLDAEDPEKDIQL 82

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+AIYDTMQ I+P + T C G AASMG+ LLS G KG R ALP++RI++
Sbjct: 83  YINSPGGSVYAGLAIYDTMQQIRPDVVTICFGLAASMGAFLLSGGCKGKRMALPSSRIMI 142

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA +IE  A++I+ IK RLN + V++ G+  E++++  +RD  MSA EA +
Sbjct: 143 HQPLGGAQGQAVEIEIQAREILYIKDRLNTMLVEHTGQPMEKLQEDTERDFFMSAEEAKE 202

Query: 198 WGVVDKVLMSRIDIEEKS 215
           +G++D+V+ SR ++ + +
Sbjct: 203 YGLIDQVI-SRPNLPDPT 219


>gi|282898518|ref|ZP_06306508.1| Peptidase S14, ClpP [Raphidiopsis brookii D9]
 gi|281196684|gb|EFA71590.1| Peptidase S14, ClpP [Raphidiopsis brookii D9]
          Length = 201

 Score =  223 bits (568), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 99/188 (52%), Positives = 147/188 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQ+ RGER++DIYSRLL+ERIVF+  Q++  +A LI AQLLFL++E+P+K+I +
Sbjct: 1   MIPIVIEQSGRGERAFDIYSRLLRERIVFLGQQVDSSLANLIVAQLLFLDSEDPEKDIYM 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM I+DTM+ I+P + T C G AASMG+ LLSAG KG R +LP++RI++
Sbjct: 61  YINSPGGSVTAGMGIFDTMKNIRPDVCTICTGLAASMGAFLLSAGTKGKRMSLPHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+  KR+LNE   ++ G+ ++ + +  +RD  MS  E+ +
Sbjct: 121 HQPLGGAQGQATDIEIQAREILYHKRKLNEYLAEHTGQPFDRIAEDTERDFFMSPQESRE 180

Query: 198 WGVVDKVL 205
           +G++D+V+
Sbjct: 181 YGLIDQVI 188


>gi|186686250|ref|YP_001869446.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nostoc
           punctiforme PCC 73102]
 gi|186468702|gb|ACC84503.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nostoc
           punctiforme PCC 73102]
          Length = 203

 Score =  223 bits (568), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 99/188 (52%), Positives = 147/188 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQ+ RGER++DIYSRLL+ERI+F+  Q+++++A LI AQLL+L+AE+P+K+I +
Sbjct: 1   MIPIVIEQSGRGERAFDIYSRLLRERIIFLGQQVDNNIANLIVAQLLYLDAEDPEKDIYM 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM I+DTM+ I+P + T C G AASMG+ LLSAG KG R +LP++RI++
Sbjct: 61  YINSPGGSVTAGMGIFDTMKHIRPDVCTICTGLAASMGAFLLSAGAKGKRMSLPHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+  K+RLN+    + G+  E + +  +RD  MS  EA +
Sbjct: 121 HQPLGGAQGQATDIEIQAREILYHKKRLNDYLADHTGQPIERIAEDTERDFFMSPEEARE 180

Query: 198 WGVVDKVL 205
           +G++D+V+
Sbjct: 181 YGLIDQVI 188


>gi|309388894|gb|ADO76774.1| ATP-dependent Clp protease proteolytic subunit ClpP [Halanaerobium
           praevalens DSM 2228]
          Length = 198

 Score =  223 bits (568), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 111/199 (55%), Positives = 160/199 (80%), Gaps = 1/199 (0%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+PMVVEQTNRGERSYDIYSRLLK+RIVF+  Q+ D +A  + AQLLFLEA+NP K+I
Sbjct: 1   MSLIPMVVEQTNRGERSYDIYSRLLKDRIVFLGSQVTDQVANTVIAQLLFLEADNPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTA +A+YDTMQ+IKP + T  MGQAAS G+LLL+AG +G R+ALP AR+
Sbjct: 61  YLYINSPGGSVTAALAMYDTMQYIKPDVVTIGMGQAASAGALLLAAGAEGKRYALPYARV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP+GG  G+A++ E H +++++I+  LNEI  ++ G+T E++ + +++D+ M+A EA
Sbjct: 121 MIHQPAGGAQGKATEAEIHIKELMRIRELLNEILSQHTGQTAEKIAQDVEKDYFMTAKEA 180

Query: 196 CDWGVVDKVLMSRIDIEEK 214
            D+G++D+V+ +R ++ EK
Sbjct: 181 VDYGLIDEVI-TRNELNEK 198


>gi|212546731|ref|XP_002153519.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Penicillium
           marneffei ATCC 18224]
 gi|210065039|gb|EEA19134.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Penicillium
           marneffei ATCC 18224]
          Length = 257

 Score =  223 bits (568), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 105/201 (52%), Positives = 149/201 (74%), Gaps = 4/201 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
            P V E    G  +YDI+SRLLKERI+ + G++++  +  I AQLLFLEA+NP+K I LY
Sbjct: 53  TPFVTETVGGGWHTYDIFSRLLKERIICLNGEVDETTSAAIVAQLLFLEADNPEKAIHLY 112

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDTM +I+ P+ T C+GQAASMGSLLL  G  G R+ LP++ I++H
Sbjct: 113 INSPGGSVTAGLAIYDTMTYIQSPVHTICVGQAASMGSLLLCGGHAGKRYCLPHSSIMIH 172

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKN-CGK---TYEEVEKTLDRDHIMSASE 194
           QPSGG+ GQASDI  HA++I++++ +LN+IY ++  GK   + +E+EK ++RD+ M A E
Sbjct: 173 QPSGGYFGQASDIAIHAKEILRVRTQLNQIYQRHLTGKKQLSLDEIEKLMERDYFMGAQE 232

Query: 195 ACDWGVVDKVLMSRIDIEEKS 215
           A + G+VD++L  R+  E +S
Sbjct: 233 ALEMGIVDEILDRRMKPESES 253


>gi|90962143|ref|YP_536059.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           salivarius UCC118]
 gi|227891166|ref|ZP_04008971.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           salivarius ATCC 11741]
 gi|301301246|ref|ZP_07207401.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|116243146|sp|Q1WTA8|CLPP_LACS1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|90821337|gb|ABD99976.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           salivarius UCC118]
 gi|227867040|gb|EEJ74461.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           salivarius ATCC 11741]
 gi|300214827|gb|ADJ79243.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           [Lactobacillus salivarius CECT 5713]
 gi|300851122|gb|EFK78851.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 197

 Score =  223 bits (567), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 96/193 (49%), Positives = 145/193 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQ+++GER+YDIYSRLLK+RI+ V+G++ D MA  I AQLLFL+A++ +K+I
Sbjct: 1   MNLVPTVIEQSSQGERAYDIYSRLLKDRIIMVSGEVNDDMANAIIAQLLFLDAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG V+AG+AIYDTM F+   + T  MG AASM S+L +AG KG RFALPN+ I
Sbjct: 61  YMYINSPGGSVSAGLAIYDTMNFVNADVQTIVMGMAASMASVLATAGTKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQ+++I+  A+ I+K ++ +N+I     G+  E + K  +RD+ M+A +A
Sbjct: 121 MIHQPLGGAQGQSTEIQIAAEHILKTRKLINQILADGSGQDIETINKDTERDNFMTAQQA 180

Query: 196 CDWGVVDKVLMSR 208
            D+G++D ++ ++
Sbjct: 181 VDYGLIDGIMKNK 193


>gi|284047279|ref|YP_003397619.1| endopeptidase Clp [Conexibacter woesei DSM 14684]
 gi|283951500|gb|ADB54244.1| Endopeptidase Clp [Conexibacter woesei DSM 14684]
          Length = 194

 Score =  223 bits (567), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 101/191 (52%), Positives = 140/191 (73%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQ+ RGERS+DIYSRLL ER++F+  ++ D +A L+ AQLL LE+ +  K+I+L
Sbjct: 4   LVPMVVEQSPRGERSFDIYSRLLNERVIFLGQEVNDDIANLVVAQLLHLESVDADKDINL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG AIYDTMQ I+P ++T C+G A SMGS LL  G  G R +LPN+RIL 
Sbjct: 64  YINSPGGSVSAGFAIYDTMQLIRPDVATICVGIAMSMGSFLLCGGASGKRMSLPNSRILN 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGGF GQA+DI+ HA++ +  +RRL E+Y  + G+  E +   ++RD   +  +A +
Sbjct: 124 HQPSGGFQGQATDIQIHAEEALAARRRLEELYALHTGQPIERIHDDMERDRYFTPEQAVE 183

Query: 198 WGVVDKVLMSR 208
           +G++DK+   R
Sbjct: 184 YGLIDKIYERR 194


>gi|139437042|ref|ZP_01771202.1| Hypothetical protein COLAER_00176 [Collinsella aerofaciens ATCC
           25986]
 gi|133776689|gb|EBA40509.1| Hypothetical protein COLAER_00176 [Collinsella aerofaciens ATCC
           25986]
          Length = 210

 Score =  223 bits (567), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 108/208 (51%), Positives = 150/208 (72%), Gaps = 5/208 (2%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           M     AK DS      LVP V+EQT RGERSYDIYSRLL +RI+F+  +I    A L+ 
Sbjct: 1   MEMRMIAKFDS-----ALVPYVIEQTPRGERSYDIYSRLLNDRIIFLGEEINSVSANLVV 55

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLL LE+++ +K+ISLYINSPGG V +G+AI DTM FIKP +ST C+G AASM ++LLS
Sbjct: 56  AQLLHLESQDAEKDISLYINSPGGEVYSGLAILDTMNFIKPQVSTICVGMAASMAAVLLS 115

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LP++++++HQPSGG  GQ ++IE  A++I K +R LN+I     G+  E+V
Sbjct: 116 AGAKGKRFCLPHSKVMIHQPSGGAQGQQTEIEIVAEEIKKTRRELNQILSDASGQPIEKV 175

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           +   +RD+ ++A EA D+G++D+++ SR
Sbjct: 176 QADTERDNYLTAVEALDYGLIDRIVTSR 203


>gi|163940539|ref|YP_001645423.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           weihenstephanensis KBAB4]
 gi|163862736|gb|ABY43795.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           weihenstephanensis KBAB4]
          Length = 193

 Score =  223 bits (567), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 104/190 (54%), Positives = 140/190 (73%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++P V+EQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ +K+I
Sbjct: 1   MSVIPYVIEQTKLGERSYDIYSRLLKDRIIMIGSEINDQVASSVVAQLLFLEAEDAEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL AG KG RFALPN+ I
Sbjct: 61  FLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLAGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K+K  +N+I  +  G+  E+V    +RD+ M+A EA
Sbjct: 121 MIHQPLGGVKGQATEIEITAKRILKLKHDINKIIAERTGQPVEKVAHDTERDYFMTAEEA 180

Query: 196 CDWGVVDKVL 205
            ++G+VD V+
Sbjct: 181 KEYGIVDAVI 190


>gi|328950943|ref|YP_004368278.1| ATP-dependent Clp protease proteolytic subunit [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451267|gb|AEB12168.1| ATP-dependent Clp protease proteolytic subunit [Marinithermus
           hydrothermalis DSM 14884]
          Length = 194

 Score =  223 bits (567), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 100/188 (53%), Positives = 144/188 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP V+EQT RGER YDIYSRLLK+RI+F+   I+  +A  + AQ+LFLEA+NP +EI L
Sbjct: 2   VVPYVIEQTARGERVYDIYSRLLKDRIIFLGTPIDTQVANTVVAQILFLEAQNPNQEIKL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+AIYDTMQ+++ P+ST C+G AASM +++L+AGE G R+ALP++R+++
Sbjct: 62  YINSPGGEVDAGLAIYDTMQYVRAPVSTICVGLAASMAAVILAAGEPGRRYALPHSRVMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DI   A+ I+K++  LN+I  ++ G+  E+V +  DR+  M A  A +
Sbjct: 122 HQPWGGARGQAADIAIEAEQILKMRENLNKILSQHTGQPLEKVTRDTDRNFWMDAQMAKE 181

Query: 198 WGVVDKVL 205
           +G+VD+V+
Sbjct: 182 YGIVDQVV 189


>gi|316967772|gb|EFV52155.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Trichinella
           spiralis]
          Length = 892

 Score =  223 bits (567), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 102/189 (53%), Positives = 150/189 (79%), Gaps = 2/189 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P+VVEQT RGER+YDI+SRLL+ERI+ V G I D +++L+ AQLLFL++++  K + +Y
Sbjct: 21  IPIVVEQTGRGERAYDIFSRLLEERIICVMGPITDELSSLVIAQLLFLQSKSLTKPVHMY 80

Query: 79  INSPGGVVTAGMAIYDTMQFIKPP--ISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           INSPGG VTAG+ IYDTMQ+IKP   I+T+C+GQA SM SLLL++G +G R  LPNAR++
Sbjct: 81  INSPGGSVTAGLGIYDTMQYIKPRILIATWCIGQACSMASLLLASGTEGYRNCLPNARVM 140

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSG   GQA+DI   A++I+K+KR++N++YVK+  K Y  +E+ ++RD  MS  +A 
Sbjct: 141 IHQPSGQAVGQATDIMIQAEEIIKLKRQINKLYVKHTKKPYNVIEEAMERDLFMSPEDAA 200

Query: 197 DWGVVDKVL 205
           ++G++DK++
Sbjct: 201 EFGLIDKIV 209


>gi|46447010|ref|YP_008375.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|67460480|sp|Q6MBE9|CLPP2_PARUW RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|46400651|emb|CAF24100.1| probable ATP-dependent Clp protease proteolytic subunit P
           [Candidatus Protochlamydia amoebophila UWE25]
          Length = 207

 Score =  223 bits (567), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 99/193 (51%), Positives = 148/193 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L P V+E T RGERS DIYSRLLK+RI+F+  +I D +A ++ AQLLFL+ E+P+K++
Sbjct: 11  MSLTPYVIEDTGRGERSMDIYSRLLKDRIIFIGTEITDQVANVVVAQLLFLKMEDPKKDV 70

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINS GG +T+G+AIYDTMQ++   I+T+C+GQAASMG+LLL+AG KG RFALPN+RI
Sbjct: 71  HIYINSLGGYITSGLAIYDTMQYLGCDINTYCIGQAASMGALLLTAGTKGKRFALPNSRI 130

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  G ++D+   A++I+++K+RLN I   +  +  E++    +RD  MSA EA
Sbjct: 131 MIHQPYGGVGGTSADVALQAKEILELKKRLNHIMADSTRQPLEKIAADSERDFYMSAVEA 190

Query: 196 CDWGVVDKVLMSR 208
            D+G++D+V++ +
Sbjct: 191 KDYGLIDEVVVPK 203


>gi|229161662|ref|ZP_04289642.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           R309803]
 gi|228621907|gb|EEK78753.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           R309803]
          Length = 193

 Score =  223 bits (567), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 104/193 (53%), Positives = 140/193 (72%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ +K+I
Sbjct: 1   MNTIPYVVEQTKLGERSYDIYSRLLKDRIIMIGSEINDQVASSVVAQLLFLEAEDAEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I
Sbjct: 61  FLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K+K  +N++  +  G++ E V    +RD+ M+A EA
Sbjct: 121 MIHQPLGGAKGQATEIEITAKRILKLKHDINKMIAEKTGQSLERVAHDTERDYFMTAEEA 180

Query: 196 CDWGVVDKVLMSR 208
            D+G+VD V+  +
Sbjct: 181 KDYGIVDDVVAKK 193


>gi|33862335|ref|NP_893895.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9313]
 gi|67460519|sp|Q7V992|CLPP1_PROMM RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|33640448|emb|CAE20237.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9313]
          Length = 224

 Score =  222 bits (566), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 101/191 (52%), Positives = 144/191 (75%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G++P VVEQ+ RGER++DIYSRLL+ERI+F+   ++D +A  + AQ+LFLEAE+P+K+I 
Sbjct: 24  GILPTVVEQSGRGERAFDIYSRLLRERIIFLGTGVDDQVADALVAQMLFLEAEDPEKDIQ 83

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VTAG+AIYDTMQ + P + T C G AASMG+ LL  G KG R ALPNARI+
Sbjct: 84  IYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLCGGTKGKRLALPNARIM 143

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA DIE  A++I+ +K  LN +  ++ G+   ++ +  DRDH +S ++A 
Sbjct: 144 IHQPLGGAQGQAVDIEIQAKEILFLKETLNGLLAEHTGQPLNKIAEDTDRDHFLSPAKAV 203

Query: 197 DWGVVDKVLMS 207
           ++G++D+V+ S
Sbjct: 204 EYGLIDRVVDS 214


>gi|123967079|ref|YP_001012160.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9515]
 gi|123201445|gb|ABM73053.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9515]
          Length = 204

 Score =  222 bits (566), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 101/187 (54%), Positives = 140/187 (74%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVEQ+ RGER++DIYSRLL+ERI+F+   I D +   + AQLLFLEAE+P K+I +Y
Sbjct: 14  IPTVVEQSGRGERAFDIYSRLLRERIIFLGTGINDQVTDSLVAQLLFLEAEDPDKDIQIY 73

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDTMQ I P + T C G AASMG+ LLS G KG R ALPN+RI++H
Sbjct: 74  INSPGGSVTAGLAIYDTMQQISPDVVTICFGVAASMGAFLLSGGAKGKRLALPNSRIMIH 133

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA +IE  A++I+ +K+ LN +  ++ G++ E++ +  +RD+ +S  EA  +
Sbjct: 134 QPLGGAQGQAVEIEIQAKEILFLKKTLNSLLSEHTGQSLEKINEDTERDYFLSPEEAVQY 193

Query: 199 GVVDKVL 205
           G++DKV+
Sbjct: 194 GLIDKVI 200


>gi|218248285|ref|YP_002373656.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
           sp. PCC 8801]
 gi|257060388|ref|YP_003138276.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
           sp. PCC 8802]
 gi|218168763|gb|ACK67500.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
           sp. PCC 8801]
 gi|256590554|gb|ACV01441.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
           sp. PCC 8802]
          Length = 201

 Score =  222 bits (566), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 101/191 (52%), Positives = 145/191 (75%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+E + RGER++DIYSRLL+ERIVF+  ++ D  A LI AQLLFLEAE+P K+I L
Sbjct: 1   MIPTVIETSGRGERAFDIYSRLLRERIVFLGQEVRDENANLIVAQLLFLEAEDPDKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG+ I+DTM  I+P +ST C+G AASMG+ LLSAG KG R +LPN+RI++
Sbjct: 61  YINSPGGSVSAGLGIFDTMNQIRPDVSTICIGLAASMGAFLLSAGTKGKRMSLPNSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+ +K+ LN+    + G+  +++ +  +RD  MSA +A +
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYLKQLLNQHLASHTGQPLDKIAEDTERDFFMSAEDALE 180

Query: 198 WGVVDKVLMSR 208
           +G++D+V+  R
Sbjct: 181 YGLIDQVINRR 191


>gi|16332037|ref|NP_442765.1| ATP-dependent protease ClpP [Synechocystis sp. PCC 6803]
 gi|1705930|sp|P54416|CLPP1_SYNY3 RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|1001349|dbj|BAA10836.1| ATP-dependent protease; ClpP [Synechocystis sp. PCC 6803]
          Length = 198

 Score =  222 bits (566), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 101/191 (52%), Positives = 144/191 (75%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+E + RG+R++DIYSRLL+ERIVF+  ++ D  A L+ AQLLFLEAE+P+K+I L
Sbjct: 1   MIPTVIETSGRGDRAFDIYSRLLRERIVFLGQEVRDENANLVVAQLLFLEAEDPEKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG+ I+DTM  I+P + T C+G AASMG+ LLSAG KG R +LPN+RI++
Sbjct: 61  YINSPGGSVSAGLGIFDTMNQIRPDVCTICIGLAASMGAFLLSAGAKGKRMSLPNSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+ +K  LN+    + GK+ EE+    +RD  MSA E+ +
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYLKALLNQHLANHTGKSLEEITADTERDFFMSAEESKE 180

Query: 198 WGVVDKVLMSR 208
           +G++D+V+  R
Sbjct: 181 YGLIDQVINRR 191


>gi|296127043|ref|YP_003634295.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brachyspira
           murdochii DSM 12563]
 gi|296018859|gb|ADG72096.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brachyspira
           murdochii DSM 12563]
          Length = 200

 Score =  222 bits (566), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 106/190 (55%), Positives = 149/190 (78%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+EQT+RGERSYDIYSRLLK+RI+F+ G+I D +A ++ AQLLFLE+ +P+K+ISLY
Sbjct: 10  IPYVIEQTSRGERSYDIYSRLLKDRIIFLGGEINDDVANIVIAQLLFLESADPEKDISLY 69

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGVVTA + +YDTMQ++KP ++T C+GQAAS G+LLL+ G KG RFA  N+RI++H
Sbjct: 70  INSPGGVVTAALGMYDTMQYVKPDVATLCVGQAASAGALLLAGGAKGKRFATANSRIMIH 129

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  G  +D+E   ++ +++K  LN I   + G+  +++E  +DRD+ MSA EA D+
Sbjct: 130 QPSGGSRGMVTDMEIQLKETIRLKSILNNIMANHTGQDIKKLEADMDRDYFMSADEAKDY 189

Query: 199 GVVDKVLMSR 208
           G++DKV  SR
Sbjct: 190 GIIDKVFSSR 199


>gi|124026830|ref|YP_001015945.1| Clp protease proteolytic subunit [Prochlorococcus marinus str.
           NATL1A]
 gi|123961898|gb|ABM76681.1| Clp protease proteolytic subunit [Prochlorococcus marinus str.
           NATL1A]
          Length = 218

 Score =  222 bits (566), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 97/189 (51%), Positives = 143/189 (75%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G++P V+EQ+ +G+R++DIYSRLL+ERI+F+   + D +A  + AQ+LFLEA++P+K+I 
Sbjct: 24  GVLPTVIEQSGQGDRAFDIYSRLLRERIIFLGTDVNDQVADALVAQMLFLEADDPEKDIQ 83

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LY+NSPGG VTAG+AIYDTMQ + P + T C G AASMG+ LLS G KG R ALPN+RI+
Sbjct: 84  LYVNSPGGSVTAGLAIYDTMQQVSPDVITICYGLAASMGAFLLSGGTKGKRLALPNSRIM 143

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA +IE  A++I+ +K  LN +  ++ G+  +++ +  DRDH +S  EA 
Sbjct: 144 IHQPLGGAQGQAVEIEIQAKEILYLKETLNSLLAEHTGQNIQKISEDTDRDHFLSPQEAV 203

Query: 197 DWGVVDKVL 205
           ++G++DKV+
Sbjct: 204 EYGLIDKVV 212


>gi|229012047|ref|ZP_04169226.1| ATP-dependent Clp protease proteolytic subunit [Bacillus mycoides
           DSM 2048]
 gi|228749135|gb|EEL98981.1| ATP-dependent Clp protease proteolytic subunit [Bacillus mycoides
           DSM 2048]
          Length = 198

 Score =  222 bits (566), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 105/194 (54%), Positives = 140/194 (72%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E   + ++P V+EQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ 
Sbjct: 2   EGFIMSVIPYVIEQTKLGERSYDIYSRLLKDRIIMIGSEINDQVASSVVAQLLFLEAEDA 61

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+I LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL AG KG RFALP
Sbjct: 62  EKDIFLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLAGAKGKRFALP 121

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+ I++HQP GG  GQA++IE  A+ I+K+K  +N+I     G+  E+V    +RD+ M+
Sbjct: 122 NSEIMIHQPLGGVKGQATEIEITAKRILKLKHDINKIISNRTGQPVEKVAHDTERDYFMT 181

Query: 192 ASEACDWGVVDKVL 205
           A EA ++G+VD V+
Sbjct: 182 AVEAKEYGIVDAVI 195


>gi|225621123|ref|YP_002722381.1| ATP-dependent Clp protease proteolytic subunit [Brachyspira
           hyodysenteriae WA1]
 gi|259585945|sp|C0QW91|CLPP_BRAHW RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|225215943|gb|ACN84677.1| ATP-dependent Clp protease proteolytic subunit [Brachyspira
           hyodysenteriae WA1]
          Length = 198

 Score =  222 bits (565), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 106/190 (55%), Positives = 149/190 (78%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+EQT+RGERSYDIYSRLLK+RI+F+ G+I D +A ++ AQLLFLE+ +P+K+ISLY
Sbjct: 8   IPYVIEQTSRGERSYDIYSRLLKDRIIFLGGEINDDVANVVIAQLLFLESADPEKDISLY 67

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGVVTA + +YDTMQ++KP ++T C+GQAAS G+LLL+ G KG RFA  N+RI++H
Sbjct: 68  INSPGGVVTAALGMYDTMQYVKPDVATLCVGQAASAGALLLAGGAKGKRFATANSRIMIH 127

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  G  +D+E   ++ +++K  LN I   + G+  +++E  +DRD+ MSA EA D+
Sbjct: 128 QPSGGSRGMVTDMEIQLKETIRLKSILNNIMANHTGQDIKKLEADMDRDYFMSAEEAKDY 187

Query: 199 GVVDKVLMSR 208
           G++DKV  SR
Sbjct: 188 GIIDKVFSSR 197


>gi|226227816|ref|YP_002761922.1| ATP-dependent Clp protease proteolytic subunit [Gemmatimonas
           aurantiaca T-27]
 gi|226091007|dbj|BAH39452.1| ATP-dependent Clp protease proteolytic subunit [Gemmatimonas
           aurantiaca T-27]
          Length = 204

 Score =  222 bits (565), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 101/188 (53%), Positives = 145/188 (77%), Gaps = 1/188 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P ++E+++RGER+YDI+SRLL +RI+F+   I D +A +I AQ+LFL+A+NP+K I LY
Sbjct: 6   MPYIIERSSRGERTYDIFSRLLMDRIIFLGSPINDDVANIIIAQMLFLDADNPEKPIHLY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG V+AG+A+YDTMQFIK P+ T CMG AASMG+ LL AG  G R ALP++RI++H
Sbjct: 66  INSPGGSVSAGLAMYDTMQFIKAPVYTTCMGMAASMGAFLLCAGAPGHRAALPHSRIMIH 125

Query: 139 QPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QPS  G  G ASDIE  A++I+ ++ ++NE+  K+ G+  E+VE+  DRD  MSA +A +
Sbjct: 126 QPSQNGGGGSASDIEIQAREILYLRAKMNELMAKHTGRQVEQVERDTDRDRFMSADDAKE 185

Query: 198 WGVVDKVL 205
           +G++D V+
Sbjct: 186 YGLIDNVI 193


>gi|124021784|ref|YP_001016091.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9303]
 gi|123962070|gb|ABM76826.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9303]
          Length = 224

 Score =  222 bits (565), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 101/191 (52%), Positives = 144/191 (75%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G++P VVEQ+ RGER++DIYSRLL+ERI+F+   ++D +A  + AQ+LFLEAE+P+K+I 
Sbjct: 24  GILPTVVEQSGRGERAFDIYSRLLRERIIFLGTGVDDQVADALVAQMLFLEAEDPEKDIQ 83

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VTAG+AIYDTMQ + P + T C G AASMG+ LL  G KG R ALPNARI+
Sbjct: 84  IYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLCGGTKGKRLALPNARIM 143

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA DIE  A++I+ +K  LN +  ++ G+   ++ +  DRDH +S ++A 
Sbjct: 144 IHQPLGGAQGQAVDIEIQAKEILFLKETLNGLLAEHTGQPLNKIAEDTDRDHFLSPAKAV 203

Query: 197 DWGVVDKVLMS 207
           ++G++D+V+ S
Sbjct: 204 EYGLIDRVVDS 214


>gi|229018102|ref|ZP_04174977.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           AH1273]
 gi|229024283|ref|ZP_04180742.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           AH1272]
 gi|228737058|gb|EEL87594.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           AH1272]
 gi|228743193|gb|EEL93318.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           AH1273]
          Length = 198

 Score =  222 bits (565), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 105/187 (56%), Positives = 138/187 (73%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ +K+I LY
Sbjct: 9   IPYVVEQTKLGERSYDIYSRLLKDRIIMIGSEINDQVASSVVAQLLFLEAEDAEKDIFLY 68

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL AG KG RFALPN+ I++H
Sbjct: 69  INSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLAGAKGKRFALPNSEIMIH 128

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA++IE  A+ I+K+K  +N+I  +  G+  E+V    +RD+ M+A EA ++
Sbjct: 129 QPLGGVKGQATEIEITAKRILKLKHDINKIIAERTGQPVEKVAHDTERDYFMTAVEAKEY 188

Query: 199 GVVDKVL 205
           G+VD V+
Sbjct: 189 GIVDAVI 195


>gi|229133677|ref|ZP_04262503.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           BDRD-ST196]
 gi|229167385|ref|ZP_04295123.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           AH621]
 gi|228615947|gb|EEK73034.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           AH621]
 gi|228649712|gb|EEL05721.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           BDRD-ST196]
          Length = 198

 Score =  222 bits (565), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 105/194 (54%), Positives = 140/194 (72%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E   + ++P V+EQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ 
Sbjct: 2   EGFIMSVIPYVIEQTKLGERSYDIYSRLLKDRIIMIGSEINDQVASSVVAQLLFLEAEDA 61

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+I LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL AG KG RFALP
Sbjct: 62  EKDIFLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLAGAKGKRFALP 121

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+ I++HQP GG  GQA++IE  A+ I+K+K  +N+I     G+  E+V    +RD+ M+
Sbjct: 122 NSEIMIHQPLGGVKGQATEIEITAKRILKLKHDINKIISDRTGQPVEKVAHDTERDYFMT 181

Query: 192 ASEACDWGVVDKVL 205
           A EA ++G+VD V+
Sbjct: 182 AVEAKEYGIVDAVI 195


>gi|298490862|ref|YP_003721039.1| ATP-dependent Clp protease proteolytic subunit ClpP ['Nostoc
           azollae' 0708]
 gi|298232780|gb|ADI63916.1| ATP-dependent Clp protease, proteolytic subunit ClpP ['Nostoc
           azollae' 0708]
          Length = 201

 Score =  221 bits (564), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 100/188 (53%), Positives = 145/188 (77%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQ+ RGER++DIYSRLL+ERI+F+  Q++  +A LI AQLLFL+AE+P+K+I +
Sbjct: 1   MIPIVIEQSGRGERAFDIYSRLLRERIIFLGQQVDSGLANLIVAQLLFLDAEDPEKDIYM 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM I+DTM+ I+P + T C G AASMG+ LLSAG KG R +LP++RI++
Sbjct: 61  YINSPGGSVTAGMGIFDTMKNIRPDVCTICTGLAASMGAFLLSAGTKGKRMSLPHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+  KR+LN    ++ G+  E + +  +RD  MS  EA +
Sbjct: 121 HQPLGGAQGQATDIEIQAREILYHKRKLNGYLAQHTGQPLERIAEDTERDFFMSPEEAQE 180

Query: 198 WGVVDKVL 205
           +G++D+V+
Sbjct: 181 YGLIDQVI 188


>gi|152975675|ref|YP_001375192.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus subsp. cytotoxis NVH 391-98]
 gi|152024427|gb|ABS22197.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cytotoxicus NVH 391-98]
          Length = 194

 Score =  221 bits (564), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 105/194 (54%), Positives = 139/194 (71%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
            +  +P VVEQT  GERSYDIYSRLLK+RIV +  +I D +A+ + AQLLFLEAE+ +K+
Sbjct: 1   MMNTIPYVVEQTKLGERSYDIYSRLLKDRIVMIGSEINDQVASSVVAQLLFLEAEDAEKD 60

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ 
Sbjct: 61  IFLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGLAASFGALLLLSGTKGKRFALPNSE 120

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQP GG  GQA++IE  A+ I+K+K+ +N I     G+  E+V +  +RD+ M+A E
Sbjct: 121 IMIHQPLGGAKGQATEIEITAKRILKLKQDINNIISDRTGQPIEKVARDTERDYFMTAEE 180

Query: 195 ACDWGVVDKVLMSR 208
           A  +G+VD V+  +
Sbjct: 181 AKTYGIVDAVITKK 194


>gi|149196344|ref|ZP_01873399.1| ATP-dependent Clp protease, proteolytic subunit (ClpP)
           [Lentisphaera araneosa HTCC2155]
 gi|149140605|gb|EDM29003.1| ATP-dependent Clp protease, proteolytic subunit (ClpP)
           [Lentisphaera araneosa HTCC2155]
          Length = 199

 Score =  221 bits (564), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 101/190 (53%), Positives = 141/190 (74%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VPMVVEQ+  GER YDIYSRLLK+RIV ++  ++DH+A+L+ AQ LFL+AE+P+K+I  +
Sbjct: 9   VPMVVEQSANGERGYDIYSRLLKDRIVMLSTPVDDHVASLLVAQFLFLQAEDPKKDIQFF 68

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+ IYDTMQ +   I T C+GQAASMG++LLSAG  G R+ LP++R+++H
Sbjct: 69  INSPGGSVTAGLMIYDTMQILSCDIQTVCIGQAASMGAVLLSAGTAGKRYCLPHSRVMIH 128

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  G A+DI   A +I ++K+ L +I   + GK Y  +E+  DRD+ MS  EA  +
Sbjct: 129 QPSGGAGGTAADITIQAAEIKRLKKELYDILSHHTGKDYPTIEEDSDRDYFMSGEEAKAY 188

Query: 199 GVVDKVLMSR 208
           G+VD ++  +
Sbjct: 189 GLVDHIMTKK 198


>gi|189500958|ref|YP_001960428.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Chlorobium
           phaeobacteroides BS1]
 gi|189496399|gb|ACE04947.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Chlorobium
           phaeobacteroides BS1]
          Length = 228

 Score =  221 bits (564), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 97/191 (50%), Positives = 147/191 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMV+E + RGER++DI+SRLL+ERI+F+   I+DH+A+L+ AQLLFLE+E+P++++ L
Sbjct: 28  LVPMVIETSGRGERAFDIFSRLLRERIIFLGTPIDDHVASLLMAQLLFLESEDPERDVFL 87

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG+ +YDT+Q+I+  +ST C+G AASMG+ LL+ G  G R +LP++RI++
Sbjct: 88  YINSPGGSVSAGLGVYDTIQYIRSEVSTVCVGMAASMGAFLLACGANGKRASLPHSRIMI 147

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQ +DI   A++I KI++ L EI   +CG+  E++ +  +RD  M+A EA  
Sbjct: 148 HQPSGGVQGQETDILIQAREIEKIRKLLEEIMASHCGQDVEKIREDSERDRWMNAEEAKA 207

Query: 198 WGVVDKVLMSR 208
           +G++D++   R
Sbjct: 208 YGIIDQIFSKR 218


>gi|116071740|ref|ZP_01469008.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. BL107]
 gi|116065363|gb|EAU71121.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. BL107]
          Length = 224

 Score =  221 bits (564), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 101/194 (52%), Positives = 145/194 (74%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G +P VVEQ+ RG+R++DIYSRLL+ERI+F+   ++D +A  + AQ+LFLEAE+P+K+I 
Sbjct: 24  GPLPTVVEQSGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDIQ 83

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+NSPGG VTAG+AIYDTMQ + P + T C G AASMG+ LLS G KG R ALPNARI+
Sbjct: 84  IYVNSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIM 143

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA DIE  A++I+ +K  LN +  ++ G+   ++ +  DRD+ +S +EA 
Sbjct: 144 IHQPLGGAQGQAVDIEIQAKEILFLKETLNGLMAEHTGQPLAKISEDTDRDYFLSPAEAV 203

Query: 197 DWGVVDKVLMSRID 210
           ++G++D+V+ S  D
Sbjct: 204 EYGLIDRVVDSSGD 217


>gi|72383092|ref|YP_292447.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Prochlorococcus marinus str. NATL2A]
 gi|115311351|sp|Q46ID4|CLPP3_PROMT RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
           AltName: Full=Endopeptidase Clp 3
 gi|72002942|gb|AAZ58744.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Prochlorococcus marinus str. NATL2A]
          Length = 194

 Score =  221 bits (563), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 96/188 (51%), Positives = 142/188 (75%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+EQ+ +G+R++DIYSRLL+ERI+F+   + D +A  + AQ+LFLEA++P+K+I L
Sbjct: 1   MLPTVIEQSGQGDRAFDIYSRLLRERIIFLGTDVNDQVADALVAQMLFLEADDPEKDIQL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG VTAG+AIYDTMQ + P + T C G AASMG+ LLS G KG R ALPN+RI++
Sbjct: 61  YVNSPGGSVTAGLAIYDTMQQVSPDVITICYGLAASMGAFLLSGGTKGKRLALPNSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA +IE  A++I+ +K  LN +  ++ G+  +++ +  DRDH +S  EA +
Sbjct: 121 HQPLGGAQGQAVEIEIQAKEILYLKETLNSLLAEHTGQNIQKISEDTDRDHFLSPQEAVE 180

Query: 198 WGVVDKVL 205
           +G++DKV+
Sbjct: 181 YGLIDKVV 188


>gi|323340198|ref|ZP_08080462.1| ATP-dependent Clp protease, protease subunit [Lactobacillus ruminis
           ATCC 25644]
 gi|323092389|gb|EFZ34997.1| ATP-dependent Clp protease, protease subunit [Lactobacillus ruminis
           ATCC 25644]
          Length = 197

 Score =  221 bits (563), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 95/193 (49%), Positives = 145/193 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQ+ +GER+YDIYSRLLK+RI+ V+G++ D MA  + AQLLFL+A++ +K+I
Sbjct: 1   MNLVPTVIEQSAQGERAYDIYSRLLKDRIIMVSGEVTDDMANAVIAQLLFLDAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG V+AG+AIYDTM F+   + T  MG AASM S+L +AG KG RFALPN+ I
Sbjct: 61  YMYINSPGGSVSAGLAIYDTMNFVNADVQTIVMGMAASMASVLSTAGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQ+++I+  A+ I+K ++ +N+I   + G+  E + K  +RD+ M+A +A
Sbjct: 121 MIHQPLGGAQGQSTEIQIAAEHILKTRKLINQILADHSGQDIETINKDTERDNFMTAQQA 180

Query: 196 CDWGVVDKVLMSR 208
            D+G++D ++ ++
Sbjct: 181 VDYGLIDGIMKNK 193


>gi|221633185|ref|YP_002522410.1| Clp protease [Thermomicrobium roseum DSM 5159]
 gi|221155739|gb|ACM04866.1| Clp protease [Thermomicrobium roseum DSM 5159]
          Length = 205

 Score =  221 bits (563), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 98/188 (52%), Positives = 142/188 (75%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++PMV+E T+RGER+YDIYSRLL++RI+F+   I+D +A  + AQ+LFL  ENP+ +I L
Sbjct: 10  VIPMVIETTSRGERAYDIYSRLLRDRIIFLGTPIDDQVANAVIAQMLFLAHENPEADIKL 69

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG+V AG+AIYDTMQ I+P ++T+C+G  ASM ++LL+AG KG RFALP++R+L+
Sbjct: 70  YINSPGGLVYAGLAIYDTMQMIEPDVATYCVGLGASMAAVLLAAGTKGKRFALPHSRVLI 129

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQ + GF G   DIE  A++ + +   L E+   + G+ +E V++  +RD+ MSA EA D
Sbjct: 130 HQGTSGFRGSVPDIEIQARETLNLTTMLTELLAFHTGQPFERVKRDTERDYFMSAYEAKD 189

Query: 198 WGVVDKVL 205
           +G+VD VL
Sbjct: 190 YGIVDHVL 197


>gi|15806970|ref|NP_295695.1| ATP-dependent Clp protease proteolytic subunit [Deinococcus
           radiodurans R1]
 gi|18203425|sp|Q9RSZ7|CLPP_DEIRA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|6459760|gb|AAF11524.1|AE002035_7 ATP-dependent Clp protease, proteolytic subunit ClpP [Deinococcus
           radiodurans R1]
          Length = 204

 Score =  221 bits (563), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 100/190 (52%), Positives = 143/190 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++P V+EQT RGERSYDIYSRLLK+RI+FV   +E  MA  I AQLL L+++NP++EI
Sbjct: 4   MSVIPYVIEQTGRGERSYDIYSRLLKDRIIFVGTPVESQMANSIVAQLLLLDSQNPEQEI 63

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YIN PGG V AG+AIYDTM++IK P+ST C+G A SMGS+LL AG+KG R ALPN+RI
Sbjct: 64  QMYINCPGGEVYAGLAIYDTMRYIKAPVSTICVGMAMSMGSVLLMAGDKGKRMALPNSRI 123

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQ S GF G   D+E  A++++K++  L +IY K+     E++ + ++RD+ MS  EA
Sbjct: 124 MIHQGSAGFRGNTPDLEVQAKEVLKLRDTLVDIYHKHTDLPQEKLLRDMERDYFMSPEEA 183

Query: 196 CDWGVVDKVL 205
             +G++D+V+
Sbjct: 184 LKYGLIDQVI 193


>gi|261366992|ref|ZP_05979875.1| Clp protease [Subdoligranulum variabile DSM 15176]
 gi|282571110|gb|EFB76645.1| Clp protease [Subdoligranulum variabile DSM 15176]
          Length = 196

 Score =  221 bits (563), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 98/193 (50%), Positives = 145/193 (75%), Gaps = 3/193 (1%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT RGERSYDI+SRLL +RI+ ++  +    A+++ AQLL+LE ++P+K+I
Sbjct: 1   MSLVPYVIEQTARGERSYDIFSRLLNDRIIVLSEDVNSTSASVVVAQLLYLEGQDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG ++ GMAI+DTM +IK  +ST C+G AASMGS LL++G KG RFALPN+ I
Sbjct: 61  YFYINSPGGSISDGMAIHDTMNYIKCDVSTICIGMAASMGSFLLASGTKGKRFALPNSEI 120

Query: 136 LLHQP---SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           L+HQP    GG SGQA+DI+ HA  I+ I+ R+N++Y +  G+  E +++  +RD+ M+A
Sbjct: 121 LIHQPLISGGGISGQATDIQIHANHIIHIRERMNQLYSQYTGQALETIQRDTERDNYMTA 180

Query: 193 SEACDWGVVDKVL 205
            +A ++G++D +L
Sbjct: 181 QQAKEYGLIDDIL 193


>gi|257791675|ref|YP_003182281.1| Endopeptidase Clp [Eggerthella lenta DSM 2243]
 gi|317487860|ref|ZP_07946452.1| Clp protease [Eggerthella sp. 1_3_56FAA]
 gi|325830649|ref|ZP_08164070.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Eggerthella sp. HGA1]
 gi|257475572|gb|ACV55892.1| Endopeptidase Clp [Eggerthella lenta DSM 2243]
 gi|316912986|gb|EFV34503.1| Clp protease [Eggerthella sp. 1_3_56FAA]
 gi|325487395|gb|EGC89837.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Eggerthella sp. HGA1]
          Length = 207

 Score =  221 bits (563), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 102/192 (53%), Positives = 141/192 (73%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            L+P V+EQ+ RGERSYDIYSRLL +R++F+  QI+D++A  + AQLL LE+ +P K+IS
Sbjct: 8   ALIPYVIEQSPRGERSYDIYSRLLNDRVIFLGEQIDDNVANSVVAQLLHLESADPDKDIS 67

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAG+AI DTM FIK  +ST C+G+ ASM ++LLS G KG R  LPN+ +L
Sbjct: 68  LYINSPGGSVTAGLAILDTMDFIKCDVSTICLGECASMAAVLLSNGAKGKRLCLPNSMVL 127

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  GQ ++I   A  ++K + RLN+I   N G+T E ++   +RD+ M+A EA 
Sbjct: 128 IHQPSGGAQGQQTEIAIVADFMLKTRNRLNKILADNTGQTLETIQNDTERDNYMTAEEAV 187

Query: 197 DWGVVDKVLMSR 208
            +G+VD++  SR
Sbjct: 188 AYGLVDRITTSR 199


>gi|300870901|ref|YP_003785772.1| ATP-dependent Clp protease proteolytic subunit ClpP [Brachyspira
           pilosicoli 95/1000]
 gi|300688600|gb|ADK31271.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brachyspira
           pilosicoli 95/1000]
          Length = 209

 Score =  221 bits (563), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 110/206 (53%), Positives = 159/206 (77%), Gaps = 1/206 (0%)

Query: 3   FEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQ 62
           F+   KK  E  ++  +P V+EQT+RGERSYDIYSRLLK+RI+F+ G+I D +A ++ AQ
Sbjct: 4   FDRVDKKYIEKSYM-TIPYVIEQTSRGERSYDIYSRLLKDRIIFLGGEINDDVANVVIAQ 62

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           LLFLE+ +P+K+ISLYINSPGGVVTA + +YDTMQ++KP ++T C+GQAAS G+LLL+ G
Sbjct: 63  LLFLESADPEKDISLYINSPGGVVTAALGMYDTMQYVKPDVATLCVGQAASAGALLLAGG 122

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
             G RFA  N+RI++HQPSGG  G  +D+E   ++ +++K  LN+I+VK+ G+  +++E 
Sbjct: 123 ASGKRFATVNSRIMIHQPSGGSRGMVTDMEIQLRETIRLKAILNDIFVKHTGQELKKLEA 182

Query: 183 TLDRDHIMSASEACDWGVVDKVLMSR 208
            +DRD+ MSA EA ++G++DKV  SR
Sbjct: 183 DMDRDYFMSAEEAKEYGIIDKVFSSR 208


>gi|229173439|ref|ZP_04300983.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           MM3]
 gi|228610133|gb|EEK67411.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           MM3]
          Length = 198

 Score =  221 bits (563), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 104/190 (54%), Positives = 138/190 (72%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ +K+I
Sbjct: 6   MNTIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDI 65

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL AG KG RFALPN+ I
Sbjct: 66  FLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGLAASFGALLLLAGAKGKRFALPNSEI 125

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K+K  +N+I     G+  E++    +RD+ M+A EA
Sbjct: 126 MIHQPLGGVKGQATEIEITAKRILKLKHDINKIIADRTGQPIEKIAHDTERDYFMTAEEA 185

Query: 196 CDWGVVDKVL 205
            ++G+VD V+
Sbjct: 186 KEYGIVDGVV 195


>gi|325283535|ref|YP_004256076.1| ATP-dependent Clp protease proteolytic subunit [Deinococcus
           proteolyticus MRP]
 gi|324315344|gb|ADY26459.1| ATP-dependent Clp protease proteolytic subunit [Deinococcus
           proteolyticus MRP]
          Length = 198

 Score =  221 bits (563), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 98/190 (51%), Positives = 144/190 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++P V+EQT RGER+YDIYSRLLK+RI+FV   +E  MA  I AQLL L+++NP++EI
Sbjct: 1   MSVIPYVIEQTGRGERTYDIYSRLLKDRIIFVGTPVESQMANSIVAQLLLLDSQNPEQEI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YIN PGG V AG+AIYDTMQ+++ PIST C+G A SMGS+LL AG+KG R ALPN+RI
Sbjct: 61  QMYINCPGGEVYAGLAIYDTMQYVRAPISTICVGMAMSMGSVLLMAGDKGKRMALPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQ S GF G   D+E  A++++ ++ +L EIY K+    ++++ + ++RD+ MS  EA
Sbjct: 121 MIHQGSAGFRGNTPDLEVQAKEVLSLRDKLVEIYHKHTDLPHDKLLRDMERDYFMSPEEA 180

Query: 196 CDWGVVDKVL 205
             +G++D+V+
Sbjct: 181 QQYGLIDQVI 190


>gi|126700971|ref|YP_001089868.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile 630]
 gi|254976933|ref|ZP_05273405.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile QCD-66c26]
 gi|255094319|ref|ZP_05323797.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile CIP 107932]
 gi|255102503|ref|ZP_05331480.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile QCD-63q42]
 gi|255308399|ref|ZP_05352570.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile ATCC 43255]
 gi|255316073|ref|ZP_05357656.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile QCD-76w55]
 gi|255518732|ref|ZP_05386408.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile QCD-97b34]
 gi|255651852|ref|ZP_05398754.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile QCD-37x79]
 gi|260684879|ref|YP_003216164.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile CD196]
 gi|260688537|ref|YP_003219671.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile R20291]
 gi|306521636|ref|ZP_07407983.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile QCD-32g58]
 gi|115252408|emb|CAJ70250.1| ATP-dependent Clp protease proteolytic subunit 2 (Endopeptidase Clp
           2) [Clostridium difficile]
 gi|260211042|emb|CBA66381.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile CD196]
 gi|260214554|emb|CBE07092.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile R20291]
          Length = 194

 Score =  221 bits (563), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 98/190 (51%), Positives = 144/190 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT +GERSYDIYS+LLK+RI+F+  +I D +A+L+ AQLLFLE+E+P  +I
Sbjct: 1   MSLVPHVIEQTGQGERSYDIYSKLLKDRIIFIGEEINDAIASLVVAQLLFLESEDPDSDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG  T+G AIYDTM +++  +ST C+G AASM + LL+ G  G R ALPN+ I
Sbjct: 61  IIYINSPGGSATSGFAIYDTMNYVRCDVSTICIGMAASMSAFLLAGGTHGKRCALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+D++    +I+KIK RL++I  +N GK+ E++ +  DRD+ M+A EA
Sbjct: 121 MIHQPMGGAKGQATDVKIAVDNILKIKERLDKILSENTGKSIEDIRRDTDRDNFMTALEA 180

Query: 196 CDWGVVDKVL 205
            ++G++D ++
Sbjct: 181 KEYGLIDYIM 190


>gi|87301613|ref|ZP_01084453.1| Clp protease proteolytic subunit [Synechococcus sp. WH 5701]
 gi|87283830|gb|EAQ75784.1| Clp protease proteolytic subunit [Synechococcus sp. WH 5701]
          Length = 213

 Score =  221 bits (562), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 101/189 (53%), Positives = 142/189 (75%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G++P VVEQ+ RGER++DIYSRLL+ERI+F+   I+D +A  + AQLLFLEAE+P+K+I 
Sbjct: 19  GVLPTVVEQSGRGERAFDIYSRLLRERIIFLGTGIDDQVADSLVAQLLFLEAEDPEKDIQ 78

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+NSPGG VTAG+AIYDTMQ + P + T C G AASMG+ LLS G KG R ALP+ARI+
Sbjct: 79  IYVNSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRMALPSARIM 138

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA DIE  A++I+ +K  LN +  ++ G+   ++ +  DRD+ +S  EA 
Sbjct: 139 IHQPLGGAQGQAVDIEIQAKEILFLKDTLNGLMAEHTGQPLAKIAEDTDRDYFLSPPEAV 198

Query: 197 DWGVVDKVL 205
            +G++D+V+
Sbjct: 199 SYGLIDRVV 207


>gi|206973614|ref|ZP_03234532.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus H3081.97]
 gi|206747770|gb|EDZ59159.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus H3081.97]
          Length = 193

 Score =  221 bits (562), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 104/187 (55%), Positives = 137/187 (73%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ +K+I LY
Sbjct: 4   IPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLY 63

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL AG KG RFALPN+ I++H
Sbjct: 64  INSPGGSTTAGFAILDTMNLIKPDVQTLCMGLAASFGALLLLAGAKGKRFALPNSEIMIH 123

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA++IE  A+ I+K+K  +N+I     G+  E++    +RD+ M+A EA ++
Sbjct: 124 QPLGGVKGQATEIEITAKRILKLKHDINKIIADRTGQPIEKIAHDTERDYFMTAEEAKEY 183

Query: 199 GVVDKVL 205
           G+VD V+
Sbjct: 184 GIVDGVV 190


>gi|229060463|ref|ZP_04197826.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           AH603]
 gi|228718846|gb|EEL70467.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           AH603]
          Length = 198

 Score =  221 bits (562), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 105/187 (56%), Positives = 137/187 (73%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ +K+I LY
Sbjct: 9   IPYVVEQTKLGERSYDIYSRLLKDRIIMIGSEINDQVASSVVAQLLFLEAEDAEKDIFLY 68

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL AG KG RFALPN+ I++H
Sbjct: 69  INSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLAGAKGKRFALPNSEIMIH 128

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA++IE  A+ I+K+K  +N+I     G+  E+V    +RD+ M+A EA ++
Sbjct: 129 QPLGGVKGQATEIEITAKRILKLKHDINKIISDRTGQPVEKVAHDTERDYFMTAVEAKEY 188

Query: 199 GVVDKVL 205
           G+VD V+
Sbjct: 189 GIVDAVI 195


>gi|298252276|ref|ZP_06976079.1| Endopeptidase Clp [Ktedonobacter racemifer DSM 44963]
 gi|297546868|gb|EFH80736.1| Endopeptidase Clp [Ktedonobacter racemifer DSM 44963]
          Length = 211

 Score =  221 bits (562), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 102/190 (53%), Positives = 147/190 (77%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+E T RGER+YD++SRLL++RI+ V G I+D M+ L+ AQLL+L AE+ ++EI++
Sbjct: 5   LVPTVLENTPRGERAYDLFSRLLRDRIIVVNGPIDDTMSGLVVAQLLYLAAEDSKREINM 64

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG + AG+ IYDTM+ +  PIST C+G AAS G++LL AGEKG RF++P+ARI L
Sbjct: 65  YINSPGGSINAGLGIYDTMRVLPCPISTTCVGYAASFGTILLLAGEKGRRFSMPHARIHL 124

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SG  SGQASDI+ HA++I+ ++  +N+I  ++ G+T E ++K  +RD  MSA EA
Sbjct: 125 HQPLISGSLSGQASDIDIHAREILHLRSEINDIIQEHSGQTLERIQKDTNRDFYMSAVEA 184

Query: 196 CDWGVVDKVL 205
            ++G++D +L
Sbjct: 185 KEYGIIDDIL 194


>gi|57234482|ref|YP_181451.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Dehalococcoides ethenogenes 195]
 gi|270308033|ref|YP_003330091.1| ATP-dependent Clp protease, proteolytic subunit [Dehalococcoides
           sp. VS]
 gi|115311355|sp|Q3Z8J8|CLPP_DEHE1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|57224930|gb|AAW39987.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Dehalococcoides ethenogenes 195]
 gi|270153925|gb|ACZ61763.1| ATP-dependent Clp protease, proteolytic subunit [Dehalococcoides
           sp. VS]
          Length = 200

 Score =  221 bits (562), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 102/188 (54%), Positives = 145/188 (77%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VPMV+E + RGER++DIYS LLKERI+F+  QI D +A L+ AQLLFL+ E+P K+ISL
Sbjct: 7   VVPMVIESSARGERAFDIYSLLLKERIIFLGSQINDQVANLVIAQLLFLDREDPDKDISL 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YI+SPGGV++AG+A+YDTMQ I+P +ST C+G AASM ++LL AG KG R+ALPNA I +
Sbjct: 67  YIHSPGGVISAGLAMYDTMQLIRPKVSTICVGVAASMATVLLCAGAKGKRYALPNATIHM 126

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQ  GG  GQASDIE  A++I++ +  L  I VK+ G+  E++    DRD+ ++A +A +
Sbjct: 127 HQAMGGAQGQASDIEIAAREIMRQQDILRNILVKHTGQPMEKIIHDSDRDYYLNAQQAVE 186

Query: 198 WGVVDKVL 205
           +G++D++L
Sbjct: 187 YGLIDEIL 194


>gi|116515217|ref|YP_802846.1| hypothetical protein BCc_293 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116257071|gb|ABJ90753.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease,
           heat shock protein F21.5 [Buchnera aphidicola str. Cc
           (Cinara cedri)]
          Length = 200

 Score =  220 bits (561), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 100/185 (54%), Positives = 149/185 (80%), Gaps = 1/185 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P V+E+TN GERSYDI+S+LLKERI+F+TG I+D++A+++ +Q+LFLE+EN +K+I +
Sbjct: 15  LIPFVIEKTNHGERSYDIFSKLLKERIIFITGIIDDNIASIVISQILFLESENKKKDIFI 74

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG++T+G++IYDTMQF++P I+T C+GQA    ++LL +G KG RF+LP+ARI+L
Sbjct: 75  YINSPGGIITSGLSIYDTMQFVQPKINTICIGQAV-YAAILLCSGNKGKRFSLPHARIML 133

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQASDI  HAQ+I KIK+ +N +   +  +  ++++K  +RD+  SA EA  
Sbjct: 134 HQPLGGFKGQASDIMIHAQEIKKIKKIINNLLSYHTKQPIKKIKKDTERDYFFSAQEAIK 193

Query: 198 WGVVD 202
           +G++D
Sbjct: 194 YGLID 198


>gi|167748739|ref|ZP_02420866.1| hypothetical protein ANACAC_03513 [Anaerostipes caccae DSM 14662]
 gi|167651709|gb|EDR95838.1| hypothetical protein ANACAC_03513 [Anaerostipes caccae DSM 14662]
          Length = 202

 Score =  220 bits (561), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 103/196 (52%), Positives = 144/196 (73%), Gaps = 3/196 (1%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P V+EQTN+GERSYDI+SRLL +RI+F+  ++ D  A+LI AQ+LFLEA++P ++I
Sbjct: 1   MSTIPYVIEQTNQGERSYDIFSRLLSDRIIFLGEEVSDISASLIVAQMLFLEAQDPGRDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG AIYDTM++I+  ++T C+G AAS G+ LL+ G +G R ALPNA I
Sbjct: 61  QLYINSPGGSVTAGFAIYDTMKYIQCDVATICVGLAASFGAFLLAGGTQGKRMALPNAEI 120

Query: 136 LLHQPS---GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           ++HQP+    G  G ASDI+  +  + K K+RLN I  +N G++ EE+E+  DRDH MSA
Sbjct: 121 MIHQPAIHGNGIQGPASDIKIMSDYMQKNKQRLNRILAENTGRSIEEIERDTDRDHFMSA 180

Query: 193 SEACDWGVVDKVLMSR 208
            EA  +G++D V+  R
Sbjct: 181 EEALKYGLIDSVISKR 196


>gi|310778378|ref|YP_003966711.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ilyobacter
           polytropus DSM 2926]
 gi|309747701|gb|ADO82363.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ilyobacter
           polytropus DSM 2926]
          Length = 199

 Score =  220 bits (561), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 101/186 (54%), Positives = 142/186 (76%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P V+E T RGER+YDIYSRLL++RI+F+  +I+D +A  I AQLLFLEAE+ +K+I +YI
Sbjct: 4   PTVIENTGRGERAYDIYSRLLRDRIIFLGTEIDDRVANSIVAQLLFLEAEDAEKDIIMYI 63

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGGV+T GMAIYDTM +IKP + T C+GQAASMG+LLL+AG  G R++L N+RI++HQ
Sbjct: 64  NSPGGVITGGMAIYDTMNYIKPDVQTVCIGQAASMGALLLTAGTPGKRYSLENSRIMIHQ 123

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQA+DI   A++I+K+K   ++I  K  G+ +++V +  +RD  M+  EA ++G
Sbjct: 124 PLGGARGQATDIAIQAKEILKMKELTSQIISKTTGQPFDKVMEDTERDKYMNPYEAKEYG 183

Query: 200 VVDKVL 205
           +VD V 
Sbjct: 184 LVDHVF 189


>gi|289450649|ref|YP_003475569.1| endopeptidase Clp [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289185196|gb|ADC91621.1| endopeptidase Clp [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 194

 Score =  220 bits (561), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 103/193 (53%), Positives = 139/193 (72%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMV+EQT RGERSYDIYSRLLKERI+ ++ ++    A+LI AQLLFLEAE+P K+I
Sbjct: 1   MSLVPMVIEQTGRGERSYDIYSRLLKERIIILSDEVNHVTASLITAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG V+ G+ I DTM +IKP + T  MG  ASMG++LL++G KG RF LPNA +
Sbjct: 61  QFYINSPGGSVSDGLMILDTMDYIKPDVQTIGMGMCASMGAVLLTSGTKGKRFMLPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASD+   A+ + K ++ LN I  +  G++  E+E+  DRD+  SA EA
Sbjct: 121 MIHQPLGGMQGQASDMIIAAEHVTKTRQILNAILQRQTGRSLNEIERDTDRDNWKSAQEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D V+  R
Sbjct: 181 IAYGLIDHVMDKR 193


>gi|51892052|ref|YP_074743.1| ATP-dependent Clp protease proteolytic subunit [Symbiobacterium
           thermophilum IAM 14863]
 gi|67460469|sp|Q67QZ4|CLPP2_SYMTH RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|51855741|dbj|BAD39899.1| ATP-dependent Clp protease proteolytic subunit [Symbiobacterium
           thermophilum IAM 14863]
          Length = 200

 Score =  220 bits (561), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 105/193 (54%), Positives = 147/193 (76%), Gaps = 3/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P+V+EQT+RGERSYDIYSRLLK+RI+F+   I+D +A  + AQLLFLE+++P KEI++
Sbjct: 4   LIPIVIEQTSRGERSYDIYSRLLKDRIIFLGTSIDDQVANAVTAQLLFLESDDPDKEINM 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINS GG+ +AG+AIYDTMQ IKP ++T+ +G AASM ++LL AG  G R+ALP+ARIL+
Sbjct: 64  YINSSGGITSAGLAIYDTMQHIKPKVNTYAIGMAASMAAVLL-AGGTGTRYALPHARILI 122

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP   GG  GQ +DIE  A++++  K +L EI  K+ G+  E+V++  +RD  MSA EA
Sbjct: 123 HQPWVKGGIGGQVTDIEITAKELLHTKEKLAEIIAKHTGQPLEKVKEDSERDRWMSAEEA 182

Query: 196 CDWGVVDKVLMSR 208
             +G+VD V+  R
Sbjct: 183 KAYGLVDVVVQPR 195


>gi|194334636|ref|YP_002016496.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Prosthecochloris aestuarii DSM 271]
 gi|194312454|gb|ACF46849.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Prosthecochloris aestuarii DSM 271]
          Length = 226

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 97/197 (49%), Positives = 153/197 (77%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMV+E + RGER++DI+SRLL+ERI+F+   I++H+A+L+ AQL+FLE+E+P+++I +
Sbjct: 28  LVPMVIETSGRGERAFDIFSRLLRERIIFLGTPIDEHVASLLMAQLIFLESEDPERDIYI 87

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG+ IYDTMQ+I+P +ST C+G AASMG+ LL++G K  R +LP++RI++
Sbjct: 88  YINSPGGSVSAGLGIYDTMQYIRPEVSTVCVGMAASMGAFLLASGAKDKRASLPHSRIMI 147

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQ +DI   A++I KI++ L+EI  ++ G+  +++    +RD  M+A EA  
Sbjct: 148 HQPSGGAQGQETDILIQAREIEKIRKLLDEILAQHTGQDVQKIRSDSERDRWMNAEEAKA 207

Query: 198 WGVVDKVLMSRIDIEEK 214
           +G++D++   R  +++K
Sbjct: 208 YGIIDQIFDRRPALDKK 224


>gi|242822497|ref|XP_002487898.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Talaromyces
           stipitatus ATCC 10500]
 gi|218712819|gb|EED12244.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Talaromyces
           stipitatus ATCC 10500]
          Length = 262

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 103/202 (50%), Positives = 151/202 (74%), Gaps = 4/202 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
            P V E    G  +YDI+SRLLKERI+ + G++++  +  I AQLLFLEA++P+K I LY
Sbjct: 54  TPFVTETVGGGWHTYDIFSRLLKERIICLNGEVDETTSASIVAQLLFLEADSPEKPIHLY 113

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDTM +I+ P++T C+GQAASMGSLLL  G  G R+ LP++ I++H
Sbjct: 114 INSPGGSVTAGLAIYDTMTYIQSPVNTICVGQAASMGSLLLCGGHAGKRYCLPHSSIMIH 173

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKN-CGK---TYEEVEKTLDRDHIMSASE 194
           QPSGG+ GQASDI  HA++I++++ +LN+IY ++  GK   + +E+EK ++RD+ M A E
Sbjct: 174 QPSGGYFGQASDIAIHAKEILRVRTQLNKIYQRHLTGKKQLSLDEIEKLMERDYFMGAQE 233

Query: 195 ACDWGVVDKVLMSRIDIEEKSK 216
           A + G+VD++L  R+  E +++
Sbjct: 234 ALEMGIVDEILDRRLKSENETE 255


>gi|239624537|ref|ZP_04667568.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520923|gb|EEQ60789.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 196

 Score =  220 bits (560), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 104/196 (53%), Positives = 144/196 (73%), Gaps = 3/196 (1%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P V+EQT+RGERSYDI+SRLL +RI+F+  ++ D  A+LI AQ+LFLEA++ +K+I
Sbjct: 1   MSTIPYVIEQTSRGERSYDIFSRLLSDRIIFLGEEVSDVSASLITAQMLFLEAQDLEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG AIYDTMQFI+  +ST C+G AAS G+ LL+ G KG R ALPNA I
Sbjct: 61  QLYINSPGGSVTAGFAIYDTMQFIRCDVSTICIGLAASFGAFLLAGGTKGKRLALPNAEI 120

Query: 136 LLHQPS---GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           ++HQP+    G  GQASDI+  +  ++K ++RLN I   N GK+  +V    +RD+ MSA
Sbjct: 121 MIHQPAIHGSGIQGQASDIKIVSDHMLKSRQRLNRILADNTGKSIAQVAADTERDYYMSA 180

Query: 193 SEACDWGVVDKVLMSR 208
            EA ++G++DK++  R
Sbjct: 181 GEAVEYGLIDKIIDRR 196


>gi|113953857|ref|YP_729303.1| ATP-dependent Clp protease proteolytic subunit ClpP [Synechococcus
           sp. CC9311]
 gi|113881208|gb|ABI46166.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. CC9311]
          Length = 229

 Score =  220 bits (560), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 102/187 (54%), Positives = 140/187 (74%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP VVEQ+ RGERS+DIYSRLL+ERI+F+   + D +A  + AQLLFLEAE+P+K+I +Y
Sbjct: 31  VPTVVEQSGRGERSFDIYSRLLRERIIFLGTDVNDQVADALVAQLLFLEAEDPEKDIQVY 90

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG +TAG+AIYDTMQ + P + T C G AASMG+ LLS G KG R ALPNARI++H
Sbjct: 91  INSPGGSITAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGCKGKRLALPNARIMIH 150

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA DIE  AQ+I+ +K  LN +   + G+   ++ +  +RD+ +S +EA ++
Sbjct: 151 QPLGGAQGQAVDIEIMAQEILFLKETLNGLMADHTGQPLAKITEDTERDYFLSPAEAVEY 210

Query: 199 GVVDKVL 205
           G++D+V+
Sbjct: 211 GLIDRVV 217


>gi|156037438|ref|XP_001586446.1| hypothetical protein SS1G_12432 [Sclerotinia sclerotiorum 1980]
 gi|154697841|gb|EDN97579.1| hypothetical protein SS1G_12432 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 198

 Score =  220 bits (560), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 100/188 (53%), Positives = 146/188 (77%), Gaps = 2/188 (1%)

Query: 29  GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTA 88
           G R+ DI+S+LL+ERI+ + G+++  ++  + AQLL+LE++ P+K I+LYINSPGG VTA
Sbjct: 8   GWRTSDIFSKLLQERIICLNGEVDSSLSAAVVAQLLYLESDAPEKAITLYINSPGGSVTA 67

Query: 89  GMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQA 148
           G+AIYDTM +IK P+ST C+GQAASMGSLLL  GE G RF LP++ I++HQPSGG+SGQA
Sbjct: 68  GLAIYDTMTYIKSPVSTVCVGQAASMGSLLLCGGEPGKRFCLPHSSIMIHQPSGGYSGQA 127

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTY--EEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           +DI  HA +I+++++ LNEIY ++  K +  EE+E+ ++RD  +SA EA D G+VD++L 
Sbjct: 128 TDIAIHATEILRVRKSLNEIYKRHLTKEHSLEEIERMMERDKFLSAQEALDMGIVDEILD 187

Query: 207 SRIDIEEK 214
            R  + +K
Sbjct: 188 RRESVGKK 195


>gi|319652198|ref|ZP_08006317.1| ATP-dependent Clp protease [Bacillus sp. 2_A_57_CT2]
 gi|317396187|gb|EFV76906.1| ATP-dependent Clp protease [Bacillus sp. 2_A_57_CT2]
          Length = 193

 Score =  220 bits (560), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 97/187 (51%), Positives = 143/187 (76%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+EQ+++GERSYDIYSRLLK+RI+ +  +I D +   + AQLLFL AE+P+K+ISLY
Sbjct: 4   IPYVIEQSSKGERSYDIYSRLLKDRIIMIGEEINDVVTNSVIAQLLFLAAESPEKDISLY 63

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TAG AI+DT+Q+IKP + T C G AAS G++LL AG+KG R++LPN+ I++H
Sbjct: 64  INSPGGSTTAGFAIFDTIQYIKPDVRTICTGMAASFGAMLLLAGKKGKRYSLPNSEIMIH 123

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA++IE  A+ I+K++  +N I  +  G+  E+V +  DRD+ M+A EA ++
Sbjct: 124 QPLGGARGQATEIEISAKRIIKLREHINGIIAERTGQPIEKVARDTDRDYFMTAEEAKEY 183

Query: 199 GVVDKVL 205
           G++D+++
Sbjct: 184 GIIDEII 190


>gi|113475211|ref|YP_721272.1| ATP-dependent Clp protease proteolytic subunit ClpP [Trichodesmium
           erythraeum IMS101]
 gi|110166259|gb|ABG50799.1| ATP-dependent Clp protease proteolytic subunit ClpP [Trichodesmium
           erythraeum IMS101]
          Length = 203

 Score =  220 bits (560), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 96/187 (51%), Positives = 146/187 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+EQ+ RGER++DIYSRLL++RI+++   I+  +A LI  QLL+L++E+P+K+I L
Sbjct: 1   MIPTVIEQSGRGERAFDIYSRLLRDRIIYLGEAIDSELANLIVGQLLYLDSEDPEKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AGM IYDTM+ ++P + T CMG AASMG+ LLS G KG R +LP++RI++
Sbjct: 61  YINSPGGSVSAGMGIYDTMRHVRPDVCTICMGIAASMGAFLLSGGTKGKRMSLPHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+ +K+ LNE   ++ G++ E++ +  +RD  MSA+EA +
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYLKKYLNECLAEHTGQSIEKITEDTERDFFMSATEAME 180

Query: 198 WGVVDKV 204
           +G++D+V
Sbjct: 181 YGIIDQV 187


>gi|222096291|ref|YP_002530348.1| ATP-dependent clp protease, proteolytic subunit clpp [Bacillus
           cereus Q1]
 gi|221240349|gb|ACM13059.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus Q1]
          Length = 193

 Score =  219 bits (559), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 103/187 (55%), Positives = 137/187 (73%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ +K+I LY
Sbjct: 4   IPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLY 63

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TAG AI DTM  I+P + T CMG AAS G+LLL AG KG RFALPN+ I++H
Sbjct: 64  INSPGGSTTAGFAILDTMNLIRPDVQTLCMGLAASFGALLLLAGAKGKRFALPNSEIMIH 123

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA++IE  A+ I+K+K  +N+I     G+  E++    +RD+ M+A EA ++
Sbjct: 124 QPLGGVKGQATEIEITAKRILKLKHDINKIIADRTGQPIEKIAHDTERDYFMTAEEAKEY 183

Query: 199 GVVDKVL 205
           G+VD V+
Sbjct: 184 GIVDGVV 190


>gi|228997711|ref|ZP_04157318.1| ATP-dependent Clp protease proteolytic subunit [Bacillus mycoides
           Rock3-17]
 gi|228762055|gb|EEM10994.1| ATP-dependent Clp protease proteolytic subunit [Bacillus mycoides
           Rock3-17]
          Length = 194

 Score =  219 bits (559), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 106/190 (55%), Positives = 137/190 (72%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P VVEQT  GERSYDIYSRLLK+RIV +  +I D +A+ + AQLLFLEAE+ +K+I
Sbjct: 2   MNTIPYVVEQTKLGERSYDIYSRLLKDRIVMIGSEINDQVASSVVAQLLFLEAEDAEKDI 61

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL AG KG RFALPN+ I
Sbjct: 62  FLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLAGAKGKRFALPNSEI 121

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K+K  +N+I     G+  E+V    +RD+ M+A EA
Sbjct: 122 MIHQPLGGVKGQATEIEITAKRILKLKHDINKIISDRTGQPVEKVALDTERDYFMTAEEA 181

Query: 196 CDWGVVDKVL 205
             +G+VD V+
Sbjct: 182 KIYGIVDAVI 191


>gi|317470420|ref|ZP_07929809.1| Clp protease [Anaerostipes sp. 3_2_56FAA]
 gi|316902100|gb|EFV24025.1| Clp protease [Anaerostipes sp. 3_2_56FAA]
          Length = 202

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 102/196 (52%), Positives = 144/196 (73%), Gaps = 3/196 (1%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P V+E+TN+GERSYDI+SRLL +RI+F+  ++ D  A+LI AQ+LFLEA++P ++I
Sbjct: 1   MSTIPYVIEKTNQGERSYDIFSRLLSDRIIFLVEEVSDISASLIVAQMLFLEAQDPGRDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG AIYDTM++I+  ++T C+G AAS G+ LL+ G +G R ALPNA I
Sbjct: 61  QLYINSPGGSVTAGFAIYDTMKYIQCDVATICVGLAASFGAFLLAGGTQGKRMALPNAEI 120

Query: 136 LLHQPS---GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           ++HQP+    G  G ASDI+  +  + K K+RLN I  +N G++ EE+E+  DRDH MSA
Sbjct: 121 MIHQPAIHGNGIQGPASDIKIMSDYMQKNKQRLNRILAENTGRSIEEIERDTDRDHFMSA 180

Query: 193 SEACDWGVVDKVLMSR 208
            EA  +G++D V+  R
Sbjct: 181 EEALKYGLIDSVISKR 196


>gi|311030263|ref|ZP_07708353.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus sp.
           m3-13]
          Length = 193

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 99/190 (52%), Positives = 143/190 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P V+EQ++RGERSYDIYSRLLK+RI+ +  +I D +A  + AQLLFL A++P+K+I
Sbjct: 1   MNTIPYVIEQSSRGERSYDIYSRLLKDRIIMIGEEINDQIANSVVAQLLFLAADDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGG  TAG AI DTM +IKP + T C+G AAS G++LL AG KG R ALPN+ I
Sbjct: 61  SIYINSPGGSTTAGFAILDTMHYIKPDVRTICIGMAASFGAMLLMAGTKGKRLALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K+K  L+++     G+  E++E+  DRD+ M+A EA
Sbjct: 121 MIHQPLGGARGQATEIEISARRILKLKGDLHKMIADYTGQPIEKIERDTDRDNFMTAGEA 180

Query: 196 CDWGVVDKVL 205
            ++G++D+V+
Sbjct: 181 KEYGIIDEVI 190


>gi|229009066|ref|ZP_04166405.1| ATP-dependent Clp protease proteolytic subunit [Bacillus mycoides
           Rock1-4]
 gi|228752236|gb|EEM01925.1| ATP-dependent Clp protease proteolytic subunit [Bacillus mycoides
           Rock1-4]
          Length = 194

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 106/190 (55%), Positives = 137/190 (72%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P VVEQT  GERSYDIYSRLLK+RIV +  +I D +A+ + AQLLFLEAE+ +K+I
Sbjct: 2   MNTIPYVVEQTKLGERSYDIYSRLLKDRIVMIGSEINDQVASSVVAQLLFLEAEDAEKDI 61

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL AG KG RFALPN+ I
Sbjct: 62  FLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLAGAKGKRFALPNSEI 121

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K+K  +N+I     G+  E+V    +RD+ M+A EA
Sbjct: 122 MIHQPLGGVKGQATEIEITAKRILKLKHDINKIISDRTGQPIEKVALDTERDYFMTAEEA 181

Query: 196 CDWGVVDKVL 205
             +G+VD V+
Sbjct: 182 KIYGIVDAVI 191


>gi|118478148|ref|YP_895299.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bacillus
           thuringiensis str. Al Hakam]
 gi|118417373|gb|ABK85792.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bacillus
           thuringiensis str. Al Hakam]
          Length = 198

 Score =  219 bits (558), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 104/193 (53%), Positives = 139/193 (72%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++P VVEQT  GERSYDIYSRLLK+RIV +  +I D +A+ + AQLLFLEAE+ +K+I
Sbjct: 6   MNVIPYVVEQTKLGERSYDIYSRLLKDRIVIIGSEINDQVASSVVAQLLFLEAEDAEKDI 65

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I
Sbjct: 66  FLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEI 125

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+A EA
Sbjct: 126 MIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMTAEEA 185

Query: 196 CDWGVVDKVLMSR 208
             +G+VD V+  +
Sbjct: 186 KAYGIVDDVVTKK 198


>gi|228908533|ref|ZP_04072373.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis IBL 200]
 gi|228965727|ref|ZP_04126807.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|229097304|ref|ZP_04228266.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock3-29]
 gi|229103392|ref|ZP_04234074.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock3-28]
 gi|229116300|ref|ZP_04245690.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock1-3]
 gi|228667132|gb|EEL22584.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock1-3]
 gi|228679888|gb|EEL34083.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock3-28]
 gi|228686115|gb|EEL40031.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock3-29]
 gi|228793986|gb|EEM41509.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228851086|gb|EEM95900.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis IBL 200]
          Length = 193

 Score =  219 bits (558), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 103/190 (54%), Positives = 138/190 (72%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ +K+I LY
Sbjct: 4   IPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIYLY 63

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I++H
Sbjct: 64  INSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIH 123

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+A EA ++
Sbjct: 124 QPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMTAEEAKEY 183

Query: 199 GVVDKVLMSR 208
           G+VD V+  +
Sbjct: 184 GIVDDVVTKK 193


>gi|196043546|ref|ZP_03110784.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus 03BB108]
 gi|225864765|ref|YP_002750143.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus 03BB102]
 gi|196025855|gb|EDX64524.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus 03BB108]
 gi|225789001|gb|ACO29218.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus 03BB102]
          Length = 193

 Score =  219 bits (558), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 104/193 (53%), Positives = 139/193 (72%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++P VVEQT  GERSYDIYSRLLK+RIV +  +I D +A+ + AQLLFLEAE+ +K+I
Sbjct: 1   MNVIPYVVEQTKLGERSYDIYSRLLKDRIVIIGSEINDQVASSVVAQLLFLEAEDAEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I
Sbjct: 61  FLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+A EA
Sbjct: 121 MIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMTAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD V+  +
Sbjct: 181 KAYGIVDDVVTKK 193


>gi|291295952|ref|YP_003507350.1| Endopeptidase Clp [Meiothermus ruber DSM 1279]
 gi|290470911|gb|ADD28330.1| Endopeptidase Clp [Meiothermus ruber DSM 1279]
          Length = 195

 Score =  219 bits (558), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 99/189 (52%), Positives = 144/189 (76%), Gaps = 1/189 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP V+EQT RGER YDIYSRLLK+RI+F+   I+  +A  + AQ+LFL A+NP +EI +
Sbjct: 2   IVPYVIEQTARGERVYDIYSRLLKDRIIFLGTPIDAQVANTVVAQILFLAAQNPNQEIRM 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+AIYDTMQF+  P+ST C+G AASMG++LL+AGE G R+ALP++++++
Sbjct: 62  YINSPGGDVDAGLAIYDTMQFVTAPVSTICVGLAASMGAVLLAAGEPGKRYALPHSKVMI 121

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP + G  GQA+DI   A+ I+K ++ LN I  ++  +  E+VE+  +RD+ ++A EA 
Sbjct: 122 HQPWARGLGGQATDIAIQAEQILKTRKVLNTILARHTNQPLEKVERDTERDYYLTAEEAA 181

Query: 197 DWGVVDKVL 205
            +G+VD+V+
Sbjct: 182 AYGLVDQVV 190


>gi|218897812|ref|YP_002446223.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus G9842]
 gi|218542547|gb|ACK94941.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus G9842]
          Length = 193

 Score =  219 bits (558), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 103/193 (53%), Positives = 139/193 (72%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ +K+I
Sbjct: 1   MNAIPYVVEQTKIGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I
Sbjct: 61  YLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+A EA
Sbjct: 121 MIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMTAEEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD V+  +
Sbjct: 181 KEYGIVDDVVTKK 193


>gi|228901328|ref|ZP_04065521.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis IBL 4222]
 gi|228858306|gb|EEN02773.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis IBL 4222]
          Length = 198

 Score =  219 bits (558), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 103/190 (54%), Positives = 138/190 (72%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ +K+I LY
Sbjct: 9   IPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIYLY 68

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I++H
Sbjct: 69  INSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIH 128

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+A EA ++
Sbjct: 129 QPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMTAEEAKEY 188

Query: 199 GVVDKVLMSR 208
           G+VD V+  +
Sbjct: 189 GIVDDVVTKK 198


>gi|17981474|gb|AAL51031.1|AF454758_1 ClpP2 [Bacillus thuringiensis]
 gi|326940559|gb|AEA16455.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 193

 Score =  219 bits (558), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 103/190 (54%), Positives = 138/190 (72%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ +K+I LY
Sbjct: 4   IPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLY 63

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I++H
Sbjct: 64  INSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIH 123

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+A EA ++
Sbjct: 124 QPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMTAEEAKEY 183

Query: 199 GVVDKVLMSR 208
           G+VD V+  +
Sbjct: 184 GIVDDVVTKK 193


>gi|228939909|ref|ZP_04102486.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228972800|ref|ZP_04133399.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228979383|ref|ZP_04139719.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis Bt407]
 gi|228780387|gb|EEM28618.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis Bt407]
 gi|228787015|gb|EEM34995.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228819840|gb|EEM65888.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar berliner ATCC 10792]
          Length = 198

 Score =  219 bits (558), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 103/190 (54%), Positives = 138/190 (72%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ +K+I LY
Sbjct: 9   IPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLY 68

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I++H
Sbjct: 69  INSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIH 128

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+A EA ++
Sbjct: 129 QPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMTAEEAKEY 188

Query: 199 GVVDKVLMSR 208
           G+VD V+  +
Sbjct: 189 GIVDDVVTKK 198


>gi|21674371|ref|NP_662436.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Chlorobium
           tepidum TLS]
 gi|25008303|sp|Q8KC73|CLPP_CHLTE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|21647550|gb|AAM72778.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Chlorobium
           tepidum TLS]
          Length = 225

 Score =  219 bits (558), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 98/191 (51%), Positives = 146/191 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMV+E + RGER++DI+SRLL+ERI+F+   I++H+A LI AQL+FLE+E+P+++I +
Sbjct: 28  LVPMVIETSGRGERAFDIFSRLLRERIIFLGSPIDEHVAGLIIAQLIFLESEDPERDIYI 87

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG+ IYDTMQ+I+P IST C+G AASMG+ LL++G  G R +LP++RI++
Sbjct: 88  YINSPGGSVSAGLGIYDTMQYIRPDISTVCVGMAASMGAFLLASGTSGKRASLPHSRIMI 147

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQ +DI   A++I KI+  L ++  K+ G+    + +  +RD  MSA EA +
Sbjct: 148 HQPSGGAQGQETDILIQAREIEKIRHLLEDLLAKHTGQEVSRIREDSERDRWMSAVEAKE 207

Query: 198 WGVVDKVLMSR 208
           +G++D++   R
Sbjct: 208 YGLIDQIFEKR 218


>gi|239618479|ref|YP_002941801.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Kosmotoga
           olearia TBF 19.5.1]
 gi|239507310|gb|ACR80797.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Kosmotoga
           olearia TBF 19.5.1]
          Length = 206

 Score =  219 bits (557), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 98/193 (50%), Positives = 145/193 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + +VP VVE   RGER YDI+++LL ERI+F+   ++D ++ ++ AQLLFLE+++P K+I
Sbjct: 6   MPVVPYVVENKGRGERIYDIFTKLLSERIIFLGWPLDDEISNIVVAQLLFLESQDPDKDI 65

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGG VT+G+AIYDTMQ+IKP +ST C+G AASM +++L+ G KG RFALP++RI
Sbjct: 66  SIYINSPGGSVTSGLAIYDTMQYIKPDVSTICIGMAASMAAVILAGGSKGKRFALPHSRI 125

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  G A DIE   ++++ I+ ++NEI   +  +  E++E+  DRD  MS +EA
Sbjct: 126 MIHQPWGGAEGTAKDIEIRTRELLFIRDQINEILSHHTNQPKEKIEEDTDRDFYMSPAEA 185

Query: 196 CDWGVVDKVLMSR 208
             +G+VDKV+  R
Sbjct: 186 VKYGLVDKVIEPR 198


>gi|193214418|ref|YP_001995617.1| endopeptidase Clp [Chloroherpeton thalassium ATCC 35110]
 gi|193087895|gb|ACF13170.1| Endopeptidase Clp [Chloroherpeton thalassium ATCC 35110]
          Length = 226

 Score =  219 bits (557), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 103/217 (47%), Positives = 157/217 (72%), Gaps = 6/217 (2%)

Query: 3   FEGCAKKD------SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMA 56
           FE  AKK+         +   LVPMV+E + RGER++DI+SRLL+ERI+F+   I+DH A
Sbjct: 8   FENFAKKELYSSRTESSINNMLVPMVIETSGRGERAFDIFSRLLRERIIFLGTPIDDHSA 67

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
           +LI AQL++LE+E+P+++I +YINSPGG V+AG+ +YDTMQ+I+P +ST C+G AASMG+
Sbjct: 68  SLIMAQLIYLESEDPERDIFMYINSPGGSVSAGLGLYDTMQYIRPDVSTVCVGMAASMGA 127

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            LL++G  G R +LP++RI++HQPSGG  GQ +DI   A++I KI+R L E++ ++  + 
Sbjct: 128 FLLASGTAGKRASLPHSRIMIHQPSGGAQGQETDIVIQAREIEKIRRLLEELFAQHTKQD 187

Query: 177 YEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
             +V +  +RD  M+A EA ++G++D++   R   EE
Sbjct: 188 VVKVREDSERDRWMNAQEAKEYGIIDEIFDRRKAPEE 224


>gi|291569895|dbj|BAI92167.1| ATP-dependent Clp protease proteolytic subunit [Arthrospira
           platensis NIES-39]
          Length = 236

 Score =  219 bits (557), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 98/192 (51%), Positives = 144/192 (75%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G++PMVVEQ+  GER++D+YSRLL++RI+F+   I+D +A  + AQ+LFLE+E+P+K+I 
Sbjct: 33  GVIPMVVEQSGMGERAFDLYSRLLRDRIIFLGTPIDDEVANAVSAQMLFLESEDPEKDIQ 92

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM IYDTMQ I+P + T C G AASMG+ LL++G  G R +LP++RI+
Sbjct: 93  LYINSPGGSVTAGMGIYDTMQQIRPDVVTICYGLAASMGAFLLASGTAGKRMSLPSSRIM 152

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA DIE  A++I+  K  LN +  ++ G+  E +    +RD  MSA+EA 
Sbjct: 153 IHQPLGGAQGQAIDIEIQAKEILYHKHTLNTLLAQHTGQPIERINADTERDFFMSAAEAQ 212

Query: 197 DWGVVDKVLMSR 208
           ++G++D+V++ +
Sbjct: 213 EYGLIDQVILKQ 224


>gi|220909724|ref|YP_002485035.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
           sp. PCC 7425]
 gi|219866335|gb|ACL46674.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
           sp. PCC 7425]
          Length = 236

 Score =  219 bits (557), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 107/205 (52%), Positives = 151/205 (73%), Gaps = 7/205 (3%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQ------IEDHMATLICAQLLFLEAENP 71
           +VPMVVEQ+ RGER++DIYSRLL+ERI+F+ G       I+D +A  I AQLLFL++E+P
Sbjct: 28  IVPMVVEQSGRGERAFDIYSRLLRERIIFLGGGGSNGRGIDDALADSIVAQLLFLDSEDP 87

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +++I LYINSPGG VTAGMAIYDT+Q +   + T C G AASMG+ LL+ G  G R ALP
Sbjct: 88  ERDIYLYINSPGGSVTAGMAIYDTIQHVHADVCTICFGLAASMGAFLLAGGAAGKRMALP 147

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           ++RI++HQP GG  GQA DIE  A++I+  KR+LNE+   + G+ +E +E   +RD  MS
Sbjct: 148 HSRIMIHQPLGGAQGQAVDIEIQAKEILYHKRKLNELLAHHTGQPFERIEADTERDFFMS 207

Query: 192 ASEACDWGVVDKVLMSRIDIEEKSK 216
           A EA ++G+VD+V+ +R ++  +S+
Sbjct: 208 AEEAKNYGLVDQVI-TRQNLPSRSE 231


>gi|229110239|ref|ZP_04239813.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock1-15]
 gi|229128131|ref|ZP_04257113.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           BDRD-Cer4]
 gi|228655406|gb|EEL11262.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           BDRD-Cer4]
 gi|228673225|gb|EEL28495.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock1-15]
          Length = 198

 Score =  219 bits (557), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 104/197 (52%), Positives = 140/197 (71%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E+  +  +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ 
Sbjct: 2   EEFKMNTIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDA 61

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+I LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALP
Sbjct: 62  EKDIYLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALP 121

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+ I++HQP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+
Sbjct: 122 NSEIMIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMT 181

Query: 192 ASEACDWGVVDKVLMSR 208
           A EA  +G+VD V+  +
Sbjct: 182 AEEAKAYGIVDDVVTKK 198


>gi|229030470|ref|ZP_04186509.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           AH1271]
 gi|228730841|gb|EEL81782.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           AH1271]
          Length = 198

 Score =  219 bits (557), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 103/197 (52%), Positives = 141/197 (71%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E + +  +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ 
Sbjct: 2   EGLKMNAIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDA 61

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+I LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALP
Sbjct: 62  EKDIFLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALP 121

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+ I++HQP GG  GQA++IE  A+ I+K+K  +N++  +  G++ E +    +RD+ M+
Sbjct: 122 NSEIMIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQSIERIAHDTERDYFMT 181

Query: 192 ASEACDWGVVDKVLMSR 208
           A EA  +G+VD V+  +
Sbjct: 182 AEEAKAYGIVDDVVTKK 198


>gi|33864600|ref|NP_896159.1| ATP-dependent Clp protease proteolytic subunit 2 [Synechococcus sp.
           WH 8102]
 gi|67460511|sp|Q7UA36|CLPP1_SYNPX RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|33632123|emb|CAE06579.1| ATP-dependent Clp protease proteolytic subunit 2 [Synechococcus sp.
           WH 8102]
          Length = 224

 Score =  219 bits (557), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 101/191 (52%), Positives = 143/191 (74%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G +P VVEQ+ RG+R++DIYSRLL+ERI+F+   ++D +A  + AQ+LFLEAE+P+K+I 
Sbjct: 24  GPLPTVVEQSGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDIQ 83

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VTAG+AIYDTMQ + P + T C G AASMG+ LLS G KG R ALPNARI+
Sbjct: 84  IYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGCKGKRLALPNARIM 143

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA DIE  A++I+ +K  LN +   + G+  +++ +  DRD+ +S +EA 
Sbjct: 144 IHQPLGGAQGQAVDIEIQAKEILFLKETLNGLMADHTGQPLDKIAEDTDRDYFLSPAEAV 203

Query: 197 DWGVVDKVLMS 207
            +G++D+V+ S
Sbjct: 204 QYGLIDRVVDS 214


>gi|229046487|ref|ZP_04192142.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           AH676]
 gi|228724849|gb|EEL76151.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           AH676]
          Length = 198

 Score =  219 bits (557), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 103/190 (54%), Positives = 138/190 (72%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ +K+I LY
Sbjct: 9   IPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLY 68

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I++H
Sbjct: 69  INSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIH 128

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+A EA ++
Sbjct: 129 QPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMTAEEAKEY 188

Query: 199 GVVDKVLMSR 208
           G+VD V+  +
Sbjct: 189 GIVDDVVTKK 198


>gi|298491692|ref|YP_003721869.1| ATP-dependent Clp protease proteolytic subunit ClpP ['Nostoc
           azollae' 0708]
 gi|298233610|gb|ADI64746.1| ATP-dependent Clp protease, proteolytic subunit ClpP ['Nostoc
           azollae' 0708]
          Length = 232

 Score =  219 bits (557), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 103/188 (54%), Positives = 142/188 (75%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VPMVVEQ+  GER++DIYSRLL+ERI+F+   I+D++A  I AQLLFL+AE+  K+I L
Sbjct: 29  IVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPIDDNVANSIVAQLLFLDAEDSGKDIQL 88

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AGMAIYDT+Q I+P + T C G AASMG+ LL+AG  G R +LP++RI++
Sbjct: 89  YINSPGGSVYAGMAIYDTIQQIRPDVVTICFGLAASMGAFLLTAGTAGKRMSLPDSRIMI 148

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA DIE  A++I+ IK  LN++  K+ G+  + +E   +RD  MSA EA +
Sbjct: 149 HQPLGGAQGQAIDIEIQAREILYIKGNLNQLMAKHTGQPLDRIEADTERDFFMSAEEAKN 208

Query: 198 WGVVDKVL 205
           +G++D+V+
Sbjct: 209 YGLIDQVI 216


>gi|56750021|ref|YP_170722.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus
           elongatus PCC 6301]
 gi|81300363|ref|YP_400571.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus
           elongatus PCC 7942]
 gi|1705929|sp|P54415|CLPP1_SYNE7 RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|67460444|sp|Q5N665|CLPP1_SYNP6 RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|755165|gb|AAC67306.1| ClpP [Synechococcus elongatus PCC 7942]
 gi|56684980|dbj|BAD78202.1| ATP-dependent protease ClpP [Synechococcus elongatus PCC 6301]
 gi|81169244|gb|ABB57584.1| ATP-dependent Clp protease proteolytic subunit ClpP [Synechococcus
           elongatus PCC 7942]
          Length = 197

 Score =  219 bits (557), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 101/191 (52%), Positives = 141/191 (73%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+VVE++ RGER++DIYSRLL+ERI+F+   +   +A  I AQLLFLEAE+P+K+I L
Sbjct: 1   MIPIVVEESGRGERAFDIYSRLLRERIIFLGEPVTSDVANRIVAQLLFLEAEDPEKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I+DTM  I+P +ST C+G AASMG+ LL+AG KG R +L ++RI++
Sbjct: 61  YINSPGGSVYDGLGIFDTMNHIRPDVSTVCVGLAASMGAFLLAAGAKGKRTSLAHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA DIE  A +I+ IK+ LNE+  +  G+    +E   DRD  MSASEA +
Sbjct: 121 HQPLGGAQGQAKDIEIQANEILYIKQNLNEVLAERTGQPLSRIEDDTDRDFFMSASEAVE 180

Query: 198 WGVVDKVLMSR 208
           +G++D+V+  R
Sbjct: 181 YGLIDRVIDRR 191


>gi|312143235|ref|YP_003994681.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Halanaerobium
           sp. 'sapolanicus']
 gi|311903886|gb|ADQ14327.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Halanaerobium
           sp. 'sapolanicus']
          Length = 198

 Score =  219 bits (557), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 109/199 (54%), Positives = 159/199 (79%), Gaps = 1/199 (0%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+PMVVEQTNRGERSYDIYSRLLK+RIVF+   + D +A  + AQLLFLEA+NP K+I
Sbjct: 1   MSLIPMVVEQTNRGERSYDIYSRLLKDRIVFLGSPVSDQVANTVIAQLLFLEADNPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTA +A+YDTMQ+IKP + T  MGQAAS G+LLL+AG +G R+ALP AR+
Sbjct: 61  YLYINSPGGSVTAALAMYDTMQYIKPDVVTIGMGQAASAGALLLAAGAEGKRYALPYARV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP+GG  G+A++ E H +++++I+  LN+I  ++ G+  E++ + +++D+ M+A EA
Sbjct: 121 MIHQPAGGAQGKATEAEIHIKELMRIRELLNQILSEHTGQDVEKIAQDVEKDYFMTAEEA 180

Query: 196 CDWGVVDKVLMSRIDIEEK 214
            D+G++D+V+ +R ++EEK
Sbjct: 181 LDYGIIDEVI-TRNELEEK 198


>gi|226356972|ref|YP_002786712.1| ATP-dependent Clp protease proteolytic subunit [Deinococcus deserti
           VCD115]
 gi|226318962|gb|ACO46958.1| putative Endopeptidase Clp [Deinococcus deserti VCD115]
          Length = 200

 Score =  219 bits (557), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 100/196 (51%), Positives = 145/196 (73%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++P V+EQT RGER YDIYSRLLK+RI+FV   IE  MA  I AQLL L+++NP++EI
Sbjct: 1   MSVIPYVIEQTGRGERMYDIYSRLLKDRIIFVGTPIESQMANTIVAQLLLLDSQNPEQEI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YIN PGG V AG+AIYDTM++IK P+ST C+G A SMGS+LL AG+KG R ALPN+RI
Sbjct: 61  QMYINCPGGEVYAGLAIYDTMRYIKAPVSTICVGIAMSMGSVLLMAGDKGKRMALPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQ S GF G   D+E  A++++ ++ +L EIY ++    +E++ + ++RD+ MS  EA
Sbjct: 121 MIHQGSAGFRGNTPDLEVQAKEVLHLRDKLVEIYHRHTDIPHEKLMRDMERDYFMSPEEA 180

Query: 196 CDWGVVDKVLMSRIDI 211
             +G++D V+ +  D+
Sbjct: 181 MRYGLIDSVIENTRDL 196


>gi|193212075|ref|YP_001998028.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Chlorobaculum
           parvum NCIB 8327]
 gi|193085552|gb|ACF10828.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Chlorobaculum
           parvum NCIB 8327]
          Length = 225

 Score =  219 bits (557), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 96/191 (50%), Positives = 148/191 (77%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMV+E + RGER++DI+SRLL+ERI+F+   I++H+A LI AQL+FLE+E+P+++I +
Sbjct: 28  LVPMVIETSGRGERAFDIFSRLLRERIIFLGSPIDEHVAGLIMAQLIFLESEDPERDIYI 87

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG V+AG+ IYDTMQ+I+P IST C+G AASMG+ LL++G  G R +LP++RI++
Sbjct: 88  YVNSPGGSVSAGLGIYDTMQYIRPDISTVCVGMAASMGAFLLASGTAGKRASLPHSRIMI 147

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQ +DI   A++I KI+  L ++  K+ G+  + + +  +RD  M+A+EA +
Sbjct: 148 HQPSGGAQGQETDILIQAREIEKIRHLLEDLLAKHTGQNVKTIREDSERDRWMNATEAKE 207

Query: 198 WGVVDKVLMSR 208
           +G++D++   R
Sbjct: 208 YGLIDQIFEKR 218


>gi|227554886|ref|ZP_03984933.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis HH22]
 gi|257081032|ref|ZP_05575393.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis E1Sol]
 gi|227175979|gb|EEI56951.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis HH22]
 gi|256989062|gb|EEU76364.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis E1Sol]
          Length = 181

 Score =  218 bits (556), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 98/180 (54%), Positives = 140/180 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQ++RGER+YDIYSRLLK+RI+ ++G I+D++A  + AQLLFL+A++ +K+I
Sbjct: 1   MNLIPTVIEQSSRGERAYDIYSRLLKDRIIMLSGPIDDNVANSVIAQLLFLDAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG V+AG+AI+DTM F+K  + T  +G AASMGS LL+AG+KG RFALPNA I
Sbjct: 61  YLYINSPGGSVSAGLAIFDTMNFVKADVQTIVLGMAASMGSFLLTAGQKGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+  ++RLN I  +  G+  E +E+  DRD+ M+A +A
Sbjct: 121 MIHQPLGGAQGQATEIEIAARHILDTRQRLNSILAERTGQPIEVIERDTDRDNYMTAEQA 180


>gi|209525239|ref|ZP_03273781.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Arthrospira
           maxima CS-328]
 gi|209494254|gb|EDZ94567.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Arthrospira
           maxima CS-328]
          Length = 237

 Score =  218 bits (556), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 98/192 (51%), Positives = 143/192 (74%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G++PMVVEQ+  GER++D+YSRLL++RI+F+   I+D +A  + AQ+LFLE+E+P+K+I 
Sbjct: 34  GVIPMVVEQSGMGERAFDLYSRLLRDRIIFLGTPIDDEVANAVSAQMLFLESEDPEKDIQ 93

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM IYDTMQ I+P + T C G AASMG+ LL++G  G R +LP++RI+
Sbjct: 94  LYINSPGGSVTAGMGIYDTMQQIRPDVVTICYGLAASMGAFLLASGTAGKRMSLPSSRIM 153

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA DIE  A++I+  K  LN +  ++ G+  E +    +RD  MSA+EA 
Sbjct: 154 IHQPLGGAQGQAIDIEIQAKEILYHKHTLNTLLAQHTGQPIERINADTERDFFMSAAEAQ 213

Query: 197 DWGVVDKVLMSR 208
           ++G++D V++ +
Sbjct: 214 EYGLIDNVILKQ 225


>gi|229196961|ref|ZP_04323701.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           m1293]
 gi|228586518|gb|EEK44596.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           m1293]
          Length = 198

 Score =  218 bits (556), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 104/190 (54%), Positives = 137/190 (72%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVEQT  GERSYDIYSRLLK+RIV +  +I D +A+ + AQLLFLEAE+ +K+I LY
Sbjct: 9   IPYVVEQTKLGERSYDIYSRLLKDRIVIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLY 68

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I++H
Sbjct: 69  INSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIH 128

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+A EA  +
Sbjct: 129 QPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMTAEEAKAY 188

Query: 199 GVVDKVLMSR 208
           G+VD V+  +
Sbjct: 189 GIVDDVVTKK 198


>gi|30262760|ref|NP_845137.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. Ames]
 gi|47528081|ref|YP_019430.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49185606|ref|YP_028858.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bacillus
           anthracis str. Sterne]
 gi|49479126|ref|YP_036877.1| ATP-dependent Clp protease, proteolytic subunit [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|165868336|ref|ZP_02212996.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0488]
 gi|167632654|ref|ZP_02390981.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0442]
 gi|167637842|ref|ZP_02396121.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0193]
 gi|170685514|ref|ZP_02876738.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0465]
 gi|170704851|ref|ZP_02895317.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0389]
 gi|177649633|ref|ZP_02932635.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0174]
 gi|190565733|ref|ZP_03018653.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis Tsiankovskii-I]
 gi|196032272|ref|ZP_03099686.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus W]
 gi|196041667|ref|ZP_03108958.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus NVH0597-99]
 gi|218903911|ref|YP_002451745.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus AH820]
 gi|227814400|ref|YP_002814409.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. CDC 684]
 gi|228927840|ref|ZP_04090888.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228946399|ref|ZP_04108720.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229122335|ref|ZP_04251549.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           95/8201]
 gi|229600104|ref|YP_002867067.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0248]
 gi|254685352|ref|ZP_05149212.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. CNEVA-9066]
 gi|254737808|ref|ZP_05195511.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. Western North America USA6153]
 gi|254743018|ref|ZP_05200703.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. Kruger B]
 gi|254752122|ref|ZP_05204159.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. Vollum]
 gi|254760643|ref|ZP_05212667.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. Australia 94]
 gi|300118751|ref|ZP_07056477.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus SJ1]
 gi|301054310|ref|YP_003792521.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
           CI]
 gi|67460478|sp|Q6HHU9|CLPP1_BACHK RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|67460529|sp|Q81PL4|CLPP1_BACAN RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|30257392|gb|AAP26623.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. Ames]
 gi|47503229|gb|AAT31905.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49179533|gb|AAT54909.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. Sterne]
 gi|49330682|gb|AAT61328.1| ATP-dependent Clp protease, proteolytic subunit [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|164715062|gb|EDR20579.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0488]
 gi|167514391|gb|EDR89758.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0193]
 gi|167532952|gb|EDR95588.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0442]
 gi|170130652|gb|EDS99513.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0389]
 gi|170670874|gb|EDT21613.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0465]
 gi|172084707|gb|EDT69765.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0174]
 gi|190563760|gb|EDV17725.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis Tsiankovskii-I]
 gi|195995023|gb|EDX58977.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus W]
 gi|196027436|gb|EDX66052.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus NVH0597-99]
 gi|218536563|gb|ACK88961.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus AH820]
 gi|227007231|gb|ACP16974.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. CDC 684]
 gi|228661184|gb|EEL16810.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           95/8201]
 gi|228813262|gb|EEM59562.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228831903|gb|EEM77492.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|229264512|gb|ACQ46149.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0248]
 gi|298723908|gb|EFI64624.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus SJ1]
 gi|300376479|gb|ADK05383.1| ATP-dependent Clp protease, proteolytic subunit [Bacillus cereus
           biovar anthracis str. CI]
 gi|324326757|gb|ADY22017.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 193

 Score =  218 bits (556), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 104/190 (54%), Positives = 137/190 (72%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVEQT  GERSYDIYSRLLK+RIV +  +I D +A+ + AQLLFLEAE+ +K+I LY
Sbjct: 4   IPYVVEQTKLGERSYDIYSRLLKDRIVIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLY 63

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I++H
Sbjct: 64  INSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIH 123

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+A EA  +
Sbjct: 124 QPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMTAEEAKAY 183

Query: 199 GVVDKVLMSR 208
           G+VD V+  +
Sbjct: 184 GIVDDVVTKK 193


>gi|119510658|ref|ZP_01629787.1| Peptidase S14, ClpP [Nodularia spumigena CCY9414]
 gi|119464709|gb|EAW45617.1| Peptidase S14, ClpP [Nodularia spumigena CCY9414]
          Length = 210

 Score =  218 bits (556), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 105/194 (54%), Positives = 146/194 (75%), Gaps = 1/194 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VPMVVEQ+  GER++DIYSRLL+ERI+F+   I+D +A  I AQLLFL+AE+ +K+I +
Sbjct: 7   IVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPIDDTVANSIVAQLLFLDAEDSEKDIQI 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AGMAIYDTMQ I+P + T C G AASMG+ LL+AG  G R +LP++RI++
Sbjct: 67  YINSPGGSVYAGMAIYDTMQQIRPDVVTICFGLAASMGAFLLAAGSAGKRMSLPDSRIMI 126

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA DIE  A++I+ +K +LN++   + G+  E +E   +RD  MSA EA +
Sbjct: 127 HQPLGGAQGQAIDIEIQAREILYVKAKLNQLLGHHTGQPLERLEADTERDFFMSAEEAKN 186

Query: 198 WGVVDKVLMSRIDI 211
           +G++D+V+ SR +I
Sbjct: 187 YGLIDQVI-SRQNI 199


>gi|228934064|ref|ZP_04096905.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228825578|gb|EEM71370.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
          Length = 198

 Score =  218 bits (556), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 104/190 (54%), Positives = 137/190 (72%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVEQT  GERSYDIYSRLLK+RIV +  +I D +A+ + AQLLFLEAE+ +K+I LY
Sbjct: 9   IPYVVEQTKLGERSYDIYSRLLKDRIVIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLY 68

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I++H
Sbjct: 69  INSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGTKGKRFALPNSEIMIH 128

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+A EA  +
Sbjct: 129 QPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMTAEEAKAY 188

Query: 199 GVVDKVLMSR 208
           G+VD V+  +
Sbjct: 189 GIVDDVVAKK 198


>gi|229145364|ref|ZP_04273753.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           BDRD-ST24]
 gi|228638203|gb|EEK94644.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           BDRD-ST24]
          Length = 198

 Score =  218 bits (556), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 104/197 (52%), Positives = 140/197 (71%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E+  +  +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ 
Sbjct: 2   EEFKMNTIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDA 61

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+I LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALP
Sbjct: 62  EKDIYLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALP 121

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+ I++HQP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+
Sbjct: 122 NSEIMIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMT 181

Query: 192 ASEACDWGVVDKVLMSR 208
           A EA  +G+VD V+  +
Sbjct: 182 AEEAKVYGIVDDVVTKK 198


>gi|210634106|ref|ZP_03297994.1| hypothetical protein COLSTE_01912 [Collinsella stercoris DSM 13279]
 gi|210158957|gb|EEA89928.1| hypothetical protein COLSTE_01912 [Collinsella stercoris DSM 13279]
          Length = 206

 Score =  218 bits (556), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 99/194 (51%), Positives = 146/194 (75%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVP V+EQT RGERSYDIYSRLL +RIVF+  ++    A L+ AQLL LE+++ +K+IS
Sbjct: 8   ALVPYVIEQTPRGERSYDIYSRLLNDRIVFLGEEVNSVTANLVIAQLLHLESQDAEKDIS 67

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG V +G+AI DTM +IKP +ST C+G AASM ++LL+ G KG RF+LP+++I+
Sbjct: 68  LYINSPGGEVYSGLAILDTMNYIKPDVSTICVGMAASMAAVLLAGGAKGKRFSLPHSKIM 127

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  GQ ++IE  A++I + +  LN+I     GK +++VE+  +RD+ + A +A 
Sbjct: 128 IHQPSGGAQGQQTEIEIAAREIRETRTTLNQILADATGKPFDQVERDTERDNYLRAEQAL 187

Query: 197 DWGVVDKVLMSRID 210
           ++G++D+++ SR D
Sbjct: 188 EYGLIDRIVSSRSD 201


>gi|228915390|ref|ZP_04078983.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228844333|gb|EEM89391.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 198

 Score =  218 bits (556), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 104/190 (54%), Positives = 137/190 (72%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVEQT  GERSYDIYSRLLK+RIV +  +I D +A+ + AQLLFLEAE+ +K+I LY
Sbjct: 9   IPYVVEQTKLGERSYDIYSRLLKDRIVIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLY 68

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I++H
Sbjct: 69  INSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGTKGKRFALPNSEIMIH 128

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+A EA  +
Sbjct: 129 QPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMTAEEAKAY 188

Query: 199 GVVDKVLMSR 208
           G+VD V+  +
Sbjct: 189 GIVDDVVTKK 198


>gi|229151000|ref|ZP_04279211.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           m1550]
 gi|228632560|gb|EEK89178.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           m1550]
          Length = 198

 Score =  218 bits (555), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 103/190 (54%), Positives = 137/190 (72%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ +K+I LY
Sbjct: 9   IPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLY 68

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I++H
Sbjct: 69  INSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIH 128

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+A EA  +
Sbjct: 129 QPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMTAEEAKAY 188

Query: 199 GVVDKVLMSR 208
           G+VD V+  +
Sbjct: 189 GIVDNVVTKK 198


>gi|229079979|ref|ZP_04212510.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock4-2]
 gi|229179074|ref|ZP_04306431.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           172560W]
 gi|228604442|gb|EEK61906.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           172560W]
 gi|228703358|gb|EEL55813.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock4-2]
          Length = 193

 Score =  218 bits (555), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 103/190 (54%), Positives = 137/190 (72%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ +K+I LY
Sbjct: 4   IPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLY 63

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I++H
Sbjct: 64  INSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIH 123

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+A EA  +
Sbjct: 124 QPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMTAEEAKAY 183

Query: 199 GVVDKVLMSR 208
           G+VD V+  +
Sbjct: 184 GIVDNVVTKK 193


>gi|229815146|ref|ZP_04445483.1| hypothetical protein COLINT_02192 [Collinsella intestinalis DSM
           13280]
 gi|229809376|gb|EEP45141.1| hypothetical protein COLINT_02192 [Collinsella intestinalis DSM
           13280]
          Length = 206

 Score =  218 bits (555), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 100/194 (51%), Positives = 146/194 (75%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVP V+EQT RGERSYDIYSRLL +RIVF+  ++    A L+ AQLL LE+++ +K+IS
Sbjct: 8   ALVPYVIEQTPRGERSYDIYSRLLNDRIVFLGEEVNSVTANLVIAQLLHLESQDAEKDIS 67

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG V +G+AI DTM +IKP +ST C+G AASM ++LL+AG  G RF+LP+++I+
Sbjct: 68  LYINSPGGEVYSGLAILDTMNYIKPDVSTICVGMAASMAAVLLAAGAPGKRFSLPHSKIM 127

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  GQ ++IE  A++I + +  LN+I     GK +E+VE+  +RD+ + A +A 
Sbjct: 128 IHQPSGGAQGQQTEIEIAAREIRETRNTLNQILADCTGKPFEQVERDTERDNYLRAEQAL 187

Query: 197 DWGVVDKVLMSRID 210
           ++G++D+++ SR D
Sbjct: 188 EYGLIDRIVTSRND 201


>gi|30020914|ref|NP_832545.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           ATCC 14579]
 gi|218233818|ref|YP_002367506.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus B4264]
 gi|296503329|ref|YP_003665029.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis BMB171]
 gi|67460526|sp|Q81CH1|CLPP1_BACCR RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|29896467|gb|AAP09746.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           ATCC 14579]
 gi|218161775|gb|ACK61767.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus B4264]
 gi|296324381|gb|ADH07309.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis BMB171]
          Length = 193

 Score =  218 bits (555), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 103/193 (53%), Positives = 138/193 (71%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ +K+I
Sbjct: 1   MNTIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I
Sbjct: 61  YLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+A EA
Sbjct: 121 MIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMTAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD V+  +
Sbjct: 181 KAYGIVDDVVTKK 193


>gi|229156366|ref|ZP_04284461.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           ATCC 4342]
 gi|228627089|gb|EEK83821.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           ATCC 4342]
          Length = 198

 Score =  218 bits (555), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 103/190 (54%), Positives = 137/190 (72%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ +K+I LY
Sbjct: 9   IPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLY 68

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I++H
Sbjct: 69  INSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIH 128

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+A EA  +
Sbjct: 129 QPLGGAKGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMTAEEAKAY 188

Query: 199 GVVDKVLMSR 208
           G+VD V+  +
Sbjct: 189 GIVDDVVTKK 198


>gi|308233830|ref|ZP_07664567.1| ATP-dependent Clp protease proteolytic subunit ClpP [Atopobium
           vaginae DSM 15829]
 gi|328943800|ref|ZP_08241265.1| ATP-dependent Clp protease, protease subunit [Atopobium vaginae DSM
           15829]
 gi|327491769|gb|EGF23543.1| ATP-dependent Clp protease, protease subunit [Atopobium vaginae DSM
           15829]
          Length = 204

 Score =  218 bits (555), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 104/196 (53%), Positives = 141/196 (71%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P VVEQT RGERSYDI+SRLL +RIVF+   I    A L+ AQLL LE+++P K+I+L
Sbjct: 9   LIPYVVEQTPRGERSYDIFSRLLNDRIVFLGEAITRDSANLVIAQLLHLESQDPDKDIAL 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YI+SPGG V AG+ I DTM FIKP +ST C+G AASM S+LL+AG KG R  LPN+ +++
Sbjct: 69  YIDSPGGEVYAGLGILDTMNFIKPDVSTICVGMAASMASVLLAAGAKGKRMCLPNSMVMI 128

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPS G  GQ +DI+  A +   I+  +NE+  +  G+T E++ +  +RD+ M A EACD
Sbjct: 129 HQPSSGAQGQQTDIQIVADETKWIRNHMNELLAQYTGQTVEKINQDTERDNYMRAKEACD 188

Query: 198 WGVVDKVLMSRIDIEE 213
           +G+VDKV+ SR +  E
Sbjct: 189 YGLVDKVITSRAEQAE 204


>gi|47569052|ref|ZP_00239742.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus G9241]
 gi|52142722|ref|YP_084107.1| ATP-dependent Clp protease, proteolytic subunit [Bacillus cereus
           E33L]
 gi|217960230|ref|YP_002338790.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus AH187]
 gi|228985882|ref|ZP_04146030.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|67460465|sp|Q63AG0|CLPP1_BACCZ RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|47554321|gb|EAL12682.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus G9241]
 gi|51976191|gb|AAU17741.1| ATP-dependent Clp protease, proteolytic subunit [Bacillus cereus
           E33L]
 gi|217063351|gb|ACJ77601.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus AH187]
 gi|228773811|gb|EEM22229.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 193

 Score =  218 bits (555), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 103/190 (54%), Positives = 137/190 (72%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ +K+I LY
Sbjct: 4   IPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLY 63

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I++H
Sbjct: 64  INSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIH 123

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+A EA  +
Sbjct: 124 QPLGGAKGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMTAEEAKAY 183

Query: 199 GVVDKVLMSR 208
           G+VD V+  +
Sbjct: 184 GIVDDVVTKK 193


>gi|206971861|ref|ZP_03232810.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus AH1134]
 gi|206733246|gb|EDZ50419.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus AH1134]
          Length = 193

 Score =  218 bits (555), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 103/190 (54%), Positives = 137/190 (72%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ +K+I LY
Sbjct: 4   IPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLY 63

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I++H
Sbjct: 64  INSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIH 123

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+A EA  +
Sbjct: 124 QPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMTAEEAKAY 183

Query: 199 GVVDKVLMSR 208
           G+VD V+  +
Sbjct: 184 GIVDDVVTKK 193


>gi|218440073|ref|YP_002378402.1| ATP-dependent Clp protease proteolytic subunit ClpP [Cyanothece sp.
           PCC 7424]
 gi|218172801|gb|ACK71534.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
           sp. PCC 7424]
          Length = 229

 Score =  218 bits (555), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 102/198 (51%), Positives = 150/198 (75%), Gaps = 3/198 (1%)

Query: 11  SEDVFLGL---VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           S  ++ GL   +P+V+EQ+  GER++DIYSRLL+ERIVF+   I+D++A  I AQLL+L+
Sbjct: 16  SPKIYSGLQNILPVVIEQSGMGERAFDIYSRLLRERIVFLGTAIDDNVADSIVAQLLYLD 75

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AE+P+K+I +YINSPGG V AG+AIYDTMQ I+P + T C G AASMG+ LLS G KG R
Sbjct: 76  AEDPEKDIQIYINSPGGSVYAGLAIYDTMQQIRPDVVTICFGLAASMGAFLLSGGAKGKR 135

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
            ALP+AR+++HQP GG  GQA +I+  A++I+ IK+RLN +  ++ G+ Y+ + +  +RD
Sbjct: 136 MALPSARMMIHQPIGGAQGQAVEIDIQAKEILYIKQRLNTLLAEHTGQPYDRIAEDTERD 195

Query: 188 HIMSASEACDWGVVDKVL 205
             MSA +A ++G++D+V+
Sbjct: 196 FYMSAYDAKNYGLIDQVI 213


>gi|228953123|ref|ZP_04115182.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|229190887|ref|ZP_04317878.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           ATCC 10876]
 gi|228592555|gb|EEK50383.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           ATCC 10876]
 gi|228806538|gb|EEM53098.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
          Length = 198

 Score =  218 bits (554), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 103/190 (54%), Positives = 137/190 (72%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ +K+I LY
Sbjct: 9   IPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLY 68

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I++H
Sbjct: 69  INSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIH 128

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+A EA  +
Sbjct: 129 QPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMTAEEAKAY 188

Query: 199 GVVDKVLMSR 208
           G+VD V+  +
Sbjct: 189 GIVDDVVTKK 198


>gi|119512812|ref|ZP_01631880.1| Peptidase S14, ClpP [Nodularia spumigena CCY9414]
 gi|119462534|gb|EAW43503.1| Peptidase S14, ClpP [Nodularia spumigena CCY9414]
          Length = 232

 Score =  218 bits (554), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 99/188 (52%), Positives = 144/188 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+VVEQ+ RGER++DIYSRLL+ERI+F+  Q+++ +A LI AQLLFL++E+ +K+I L
Sbjct: 30  MIPIVVEQSGRGERAFDIYSRLLRERIIFLGQQVDNEIANLIVAQLLFLDSEDSEKDIYL 89

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AGM I+DTM+ I+P + T C G  ASMG+ LLSAG KG R +LP++RI++
Sbjct: 90  YINSPGGSVMAGMGIFDTMKHIRPDVCTICTGLGASMGAFLLSAGAKGKRMSLPHSRIMI 149

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+  K+RLNE   ++ G+  E + +  +RD  MS  EA +
Sbjct: 150 HQPLGGAQGQATDIEIQAREILYHKQRLNEYLAEHTGQPIERIAEDTERDFFMSPEEAKE 209

Query: 198 WGVVDKVL 205
           +G++D+V+
Sbjct: 210 YGLIDQVI 217


>gi|228921458|ref|ZP_04084781.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228838231|gb|EEM83549.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 198

 Score =  218 bits (554), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 103/190 (54%), Positives = 137/190 (72%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ +K+I LY
Sbjct: 9   IPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLY 68

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I++H
Sbjct: 69  INSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIH 128

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+A EA  +
Sbjct: 129 QPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMTAEEAKAY 188

Query: 199 GVVDKVLMSR 208
           G+VD V+  +
Sbjct: 189 GIVDDVVTKK 198


>gi|291236428|ref|XP_002738143.1| PREDICTED: caseinolytic peptidase, ATP-dependent, proteolytic
           subunit-like [Saccoglossus kowalevskii]
          Length = 231

 Score =  218 bits (554), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 100/178 (56%), Positives = 141/178 (79%)

Query: 28  RGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVT 87
           RGER+YDIYSRLLKERI+ + G I D +++L+ AQLLFL++E+ +K I +YINSPGG VT
Sbjct: 43  RGERAYDIYSRLLKERIICLMGPITDDLSSLVVAQLLFLQSESNKKPIHMYINSPGGSVT 102

Query: 88  AGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQ 147
           AG+ IYDTMQ++ PPIST+C+GQA SM SLLL AG  GMR++LPN+RI++HQPSG   GQ
Sbjct: 103 AGLGIYDTMQYVLPPISTWCVGQACSMASLLLCAGFPGMRYSLPNSRIMVHQPSGQAHGQ 162

Query: 148 ASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+DI+  A++I+K+K ++N +YVK+  +  + +   ++RD  M+  EA ++G+VDKVL
Sbjct: 163 ATDIQIQAEEILKMKNQINNLYVKHTKQPLDFIAAAMERDKFMNPIEAEEFGLVDKVL 220


>gi|320161063|ref|YP_004174287.1| ATP-dependent Clp protease proteolytic subunit [Anaerolinea
           thermophila UNI-1]
 gi|319994916|dbj|BAJ63687.1| ATP-dependent Clp protease proteolytic subunit [Anaerolinea
           thermophila UNI-1]
          Length = 201

 Score =  218 bits (554), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 104/191 (54%), Positives = 142/191 (74%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
           F  ++PMV+E + RGER+YDIYS LLKERIVFV   I+D +A LI AQLLFL  E+P+K+
Sbjct: 6   FRSVIPMVIESSARGERAYDIYSLLLKERIVFVGTPIDDQIANLIVAQLLFLSREDPEKD 65

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I +YIN PGG++ AGMAIYDTMQ I   IST  +G  AS G++LL+AG KG R+ALP+A 
Sbjct: 66  IQMYINCPGGLIYAGMAIYDTMQMIPNRISTVAVGVTASFGTVLLAAGSKGQRYALPHAT 125

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I +HQP GG  GQASDIE  A++I+++K +LN+I  +  G+  + +E+  +RD  M + +
Sbjct: 126 IHMHQPLGGAQGQASDIEIQAREILRLKSQLNQILSQCTGQPMDVIERDTERDFYMDSYQ 185

Query: 195 ACDWGVVDKVL 205
           A ++G+VDKVL
Sbjct: 186 AVEYGLVDKVL 196


>gi|330719338|ref|ZP_08313938.1| ATP-dependent Clp protease proteolytic subunit [Leuconostoc fallax
           KCTC 3537]
          Length = 202

 Score =  218 bits (554), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 103/188 (54%), Positives = 137/188 (72%), Gaps = 2/188 (1%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P V+EQT  G  SYD+ SRLLK+RI+ V G++ED MAT I AQLLFLEA++  KEIS+YI
Sbjct: 3   PGVIEQTANGRESYDLPSRLLKDRIILVQGEVEDQMATSIVAQLLFLEAQDSDKEISMYI 62

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VTAG+AI DTM+FIK P++T  MG AASMG+++ S+G KG RF LPNA  L+HQ
Sbjct: 63  NSPGGSVTAGLAIVDTMRFIKAPVTTIVMGLAASMGTIIASSGTKGKRFMLPNAEYLIHQ 122

Query: 140 PSGGFSG--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           P GG +G  Q +D+   AQ + K + RLN+I  +N G+  E++    +RD+ MSA E  D
Sbjct: 123 PMGGAAGGTQQTDMAIIAQQLTKTRERLNKILSENSGQPLEQIRNDTERDYWMSAEETLD 182

Query: 198 WGVVDKVL 205
           +G++D +L
Sbjct: 183 YGLIDGIL 190


>gi|307150040|ref|YP_003885424.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
           sp. PCC 7822]
 gi|306980268|gb|ADN12149.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
           sp. PCC 7822]
          Length = 203

 Score =  218 bits (554), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 99/191 (51%), Positives = 143/191 (74%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+E + RGER++DIYSRLL++RIVF+  ++ + +A LI AQLLFLE+E+P K+I L
Sbjct: 1   MIPTVIETSGRGERAFDIYSRLLRDRIVFLGQEVTNDLANLIVAQLLFLESEDPDKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG+ I+DTM  I+P + T C+G AASMG+ LL+AG KG R +LPN+RI++
Sbjct: 61  YINSPGGSVSAGLGIFDTMNQIRPDVCTICIGLAASMGAFLLNAGAKGKRMSLPNSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+ +K  LN+      G+  E++ +  +RD  MSA EA D
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYLKGLLNQHLASRTGQPLEKIAEDTERDFFMSAEEAKD 180

Query: 198 WGVVDKVLMSR 208
           +G++D+V+  R
Sbjct: 181 YGLIDQVINRR 191


>gi|229070268|ref|ZP_04203518.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           F65185]
 gi|228712832|gb|EEL64757.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           F65185]
          Length = 198

 Score =  217 bits (553), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 103/187 (55%), Positives = 136/187 (72%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ +K+I LY
Sbjct: 4   IPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLY 63

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I++H
Sbjct: 64  INSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIH 123

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+A EA  +
Sbjct: 124 QPLGGAQGQATEIEITAKRILKLKYDINKMIAEKTGQPIERVAHDTERDYFMTAEEAKAY 183

Query: 199 GVVDKVL 205
           G+VD V+
Sbjct: 184 GIVDNVV 190


>gi|296423577|ref|XP_002841330.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637567|emb|CAZ85521.1| unnamed protein product [Tuber melanosporum]
          Length = 242

 Score =  217 bits (553), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 104/191 (54%), Positives = 143/191 (74%), Gaps = 2/191 (1%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P V E    G  SYDI+SRLLKERI+ + G + D ++ ++ AQLLFLEAENP+K+I+LYI
Sbjct: 43  PFVHESVGGGWHSYDIFSRLLKERIICLNGPVHDGISAVVVAQLLFLEAENPEKQINLYI 102

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VTAG+AIYDTM +I+ P+ST C+GQAASMGSLLL  G KG R+ALP+A +++HQ
Sbjct: 103 NSPGGSVTAGLAIYDTMNYIQAPVSTICIGQAASMGSLLLCGGTKGKRYALPHASVMVHQ 162

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK--TYEEVEKTLDRDHIMSASEACD 197
           PS   +   SDI  HA++I++++ RLN IY K+  K  T  ++EK ++RD  M A EA +
Sbjct: 163 PSILMTKGNSDIAIHAKEILRVRERLNIIYQKHLTKPHTLAQIEKIMERDLFMGAEEAKE 222

Query: 198 WGVVDKVLMSR 208
            G+VD++L++R
Sbjct: 223 MGLVDEILVAR 233


>gi|172035557|ref|YP_001802058.1| ATP-dependent Clp protease proteolytic subunit [Cyanothece sp. ATCC
           51142]
 gi|171697011|gb|ACB49992.1| ATP-dependent Clp protease, proteolytic subunit [Cyanothece sp.
           ATCC 51142]
          Length = 202

 Score =  217 bits (553), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 100/191 (52%), Positives = 142/191 (74%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+E + RGER++DIYSRLL+ERIVF+  ++ D  + LI AQLLFLEAE+P K+I L
Sbjct: 1   MIPTVIETSGRGERAFDIYSRLLRERIVFLGQEVRDENSNLIVAQLLFLEAEDPDKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG+ I+DTM  I+P + T C+G AASMG+ LLSAG KG R +LPN+RI++
Sbjct: 61  YINSPGGSVSAGLGIFDTMNQIRPDVCTICIGLAASMGAFLLSAGAKGKRMSLPNSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+ +K  LN     + G+  +++ +  +RD  MSA EA +
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYLKGLLNNHLANHTGQPLDKIAEDTERDFFMSAEEAQE 180

Query: 198 WGVVDKVLMSR 208
           +G++D+V+  R
Sbjct: 181 YGLIDQVINRR 191


>gi|159030460|emb|CAO91362.1| clpP2 [Microcystis aeruginosa PCC 7806]
          Length = 233

 Score =  217 bits (553), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 102/198 (51%), Positives = 147/198 (74%), Gaps = 1/198 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQ+  GER++DIYSRLL+ERIVF+   ++D +A  I AQLL+LEAE+P+K+I L
Sbjct: 31  VLPVVIEQSGMGERAFDIYSRLLRERIVFLGTPVDDQVADSIVAQLLYLEAEDPEKDIQL 90

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+AIYDTMQ I+P ++T C G AASMG+ LL  G  G R +LP++RI++
Sbjct: 91  YINSPGGSVYAGLAIYDTMQQIRPDVATICFGLAASMGAFLLCGGAAGKRMSLPSSRIMI 150

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A++I+ IK+RLN +   + G+ Y+ +    +RD  MSA EA +
Sbjct: 151 HQPLGGAQGQASDIAIQAKEILYIKQRLNTMLAHHTGQPYDRIANDTERDFFMSAVEAKE 210

Query: 198 WGVVDKVLMSRIDIEEKS 215
           +G++D V+ SR ++ + +
Sbjct: 211 YGLIDLVI-SRPELPDPT 227


>gi|228959022|ref|ZP_04120723.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228800683|gb|EEM47599.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 198

 Score =  217 bits (553), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 103/190 (54%), Positives = 137/190 (72%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ +K+I LY
Sbjct: 9   IPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLY 68

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I++H
Sbjct: 69  INSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIH 128

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+A EA  +
Sbjct: 129 QPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMTAEEAKVY 188

Query: 199 GVVDKVLMSR 208
           G+VD V+  +
Sbjct: 189 GIVDDVVTKK 198


>gi|166369013|ref|YP_001661286.1| ATP-dependent Clp protease proteolytic subunit 2 [Microcystis
           aeruginosa NIES-843]
 gi|166091386|dbj|BAG06094.1| ATP-dependent Clp protease proteolytic subunit 2 [Microcystis
           aeruginosa NIES-843]
          Length = 233

 Score =  217 bits (552), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 102/198 (51%), Positives = 147/198 (74%), Gaps = 1/198 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQ+  GER++DIYSRLL+ERIVF+   ++D +A  I AQLL+LEAE+P+K+I L
Sbjct: 31  VLPVVIEQSGMGERAFDIYSRLLRERIVFLGTPVDDQVADSIVAQLLYLEAEDPEKDIQL 90

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+AIYDTMQ I+P ++T C G AASMG+ LL  G  G R +LP++RI++
Sbjct: 91  YINSPGGSVYAGLAIYDTMQQIRPDVATICFGLAASMGAFLLCGGAAGKRMSLPSSRIMI 150

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A++I+ IK+RLN +   + G+ Y+ +    +RD  MSA EA +
Sbjct: 151 HQPLGGAQGQASDIAIQAKEILYIKQRLNTMLAHHTGQPYDRIANDTERDFFMSAVEAKE 210

Query: 198 WGVVDKVLMSRIDIEEKS 215
           +G++D V+ SR ++ + +
Sbjct: 211 YGLIDLVI-SRPELPDPT 227


>gi|15605439|ref|NP_220225.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis D/UW-3/CX]
 gi|76789446|ref|YP_328532.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis A/HAR-13]
 gi|166154048|ref|YP_001654166.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis 434/Bu]
 gi|166154923|ref|YP_001653178.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis L2b/UCH-1/proctitis]
 gi|237803136|ref|YP_002888330.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis B/Jali20/OT]
 gi|237805057|ref|YP_002889211.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis B/TZ1A828/OT]
 gi|255311535|ref|ZP_05354105.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis 6276]
 gi|255317836|ref|ZP_05359082.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis 6276s]
 gi|255349098|ref|ZP_05381105.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis 70]
 gi|255503635|ref|ZP_05382025.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis 70s]
 gi|255507314|ref|ZP_05382953.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis D(s)2923]
 gi|301335249|ref|ZP_07223493.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis L2tet1]
 gi|6831513|sp|O84712|CLPP2_CHLTR RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|92087003|sp|Q3KKY8|CLPP2_CHLTA RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|3329161|gb|AAC68301.1| CLP Protease [Chlamydia trachomatis D/UW-3/CX]
 gi|76167976|gb|AAX50984.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis A/HAR-13]
 gi|165930036|emb|CAP03519.1| ATP-dependent Clp protease proteolytic component [Chlamydia
           trachomatis 434/Bu]
 gi|165930911|emb|CAP06473.1| ATP-dependent Clp protease proteolytic component [Chlamydia
           trachomatis L2b/UCH-1/proctitis]
 gi|231273357|emb|CAX10272.1| ATP-dependent Clp protease proteolytic component [Chlamydia
           trachomatis B/TZ1A828/OT]
 gi|231274370|emb|CAX11165.1| ATP-dependent Clp protease proteolytic component [Chlamydia
           trachomatis B/Jali20/OT]
 gi|289525750|emb|CBJ15231.1| ATP-dependent Clp protease proteolytic component [Chlamydia
           trachomatis Sweden2]
 gi|296435322|gb|ADH17500.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis E/150]
 gi|296436250|gb|ADH18424.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis G/9768]
 gi|296437179|gb|ADH19349.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis G/11222]
 gi|296438110|gb|ADH20271.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis G/11074]
 gi|296439039|gb|ADH21192.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis E/11023]
 gi|297140611|gb|ADH97369.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis G/9301]
          Length = 203

 Score =  217 bits (552), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 100/200 (50%), Positives = 151/200 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP VVE T RGER+ DIYSRLLK+RIV +  +I + +A  + AQLLFL +E+P K+I
Sbjct: 1   MTLVPYVVEDTGRGERAMDIYSRLLKDRIVMIGQEITEPLANTVIAQLLFLMSEDPTKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            ++INSPGG +TAG+AIYDT++F+   ++T+C+GQAASMG+LLLSAG KG R+ALP++R+
Sbjct: 61  QIFINSPGGYITAGLAIYDTIRFLGCDVNTYCIGQAASMGALLLSAGTKGKRYALPHSRM 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  G ++DI+  A +I+ +K+ L+ I  +  G++ E++ +  +RD  M A EA
Sbjct: 121 MIHQPSGGIIGTSADIQLQAAEILTLKKHLSNILAECTGQSVEKIIEDSERDFFMGAEEA 180

Query: 196 CDWGVVDKVLMSRIDIEEKS 215
             +G++DKV+ S  + ++KS
Sbjct: 181 IAYGLIDKVISSAKETKDKS 200


>gi|213160794|ref|ZP_03346504.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
          Length = 155

 Score =  217 bits (552), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 95/154 (61%), Positives = 127/154 (82%)

Query: 55  MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASM 114
           MA LI AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASM
Sbjct: 1   MANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASM 60

Query: 115 GSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCG 174
           G+ LL+AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+   + G
Sbjct: 61  GAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTG 120

Query: 175 KTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           ++ E++E+  +RD  +SA EA ++G+VD +L  R
Sbjct: 121 QSLEQIERDTERDRFLSAPEAVEYGLVDSILTHR 154


>gi|229091793|ref|ZP_04222992.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock3-42]
 gi|228691575|gb|EEL45329.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock3-42]
          Length = 193

 Score =  217 bits (552), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 103/190 (54%), Positives = 137/190 (72%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVEQT  GERSYDIYSRLLK+RIV +  +I D +A+ + AQLLFLEAE+ +K+I LY
Sbjct: 4   IPYVVEQTKLGERSYDIYSRLLKDRIVIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLY 63

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TAG AI DT+  IKP + T CMG AAS G+LLL +G KG RFALPN+ I++H
Sbjct: 64  INSPGGSTTAGFAILDTINLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIH 123

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+A EA  +
Sbjct: 124 QPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMTAEEAKAY 183

Query: 199 GVVDKVLMSR 208
           G+VD V+  +
Sbjct: 184 GIVDDVVTKK 193


>gi|297748837|gb|ADI51383.1| hypothetical protein CTDEC_0706 [Chlamydia trachomatis D-EC]
 gi|297749717|gb|ADI52395.1| hypothetical protein CTDLC_0706 [Chlamydia trachomatis D-LC]
          Length = 209

 Score =  216 bits (551), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 100/198 (50%), Positives = 150/198 (75%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP VVE T RGER+ DIYSRLLK+RIV +  +I + +A  + AQLLFL +E+P K+I +
Sbjct: 9   LVPYVVEDTGRGERAMDIYSRLLKDRIVMIGQEITEPLANTVIAQLLFLMSEDPTKDIQI 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           +INSPGG +TAG+AIYDT++F+   ++T+C+GQAASMG+LLLSAG KG R+ALP++R+++
Sbjct: 69  FINSPGGYITAGLAIYDTIRFLGCDVNTYCIGQAASMGALLLSAGTKGKRYALPHSRMMI 128

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  G ++DI+  A +I+ +K+ L+ I  +  G++ E++ +  +RD  M A EA  
Sbjct: 129 HQPSGGIIGTSADIQLQAAEILTLKKHLSNILAECTGQSVEKIIEDSERDFFMGAEEAIA 188

Query: 198 WGVVDKVLMSRIDIEEKS 215
           +G++DKV+ S  + ++KS
Sbjct: 189 YGLIDKVISSAKETKDKS 206


>gi|94986250|ref|YP_605614.1| endopeptidase Clp [Deinococcus geothermalis DSM 11300]
 gi|116243132|sp|Q1IWD9|CLPP_DEIGD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|94556531|gb|ABF46445.1| Endopeptidase Clp [Deinococcus geothermalis DSM 11300]
          Length = 200

 Score =  216 bits (551), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 98/190 (51%), Positives = 141/190 (74%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++P V+EQT RGER YDIYSRLLK+RI+FV   IE  MA  I AQLL L+++NP +EI
Sbjct: 1   MSVIPYVIEQTGRGERMYDIYSRLLKDRIIFVGTPIESQMANTIVAQLLLLDSQNPDQEI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YIN PGG V AG+AIYDTM++IK P+ST C+G A SMGS+LL AG+KG R ALPN+RI
Sbjct: 61  QMYINCPGGEVYAGLAIYDTMRYIKAPVSTICVGIAMSMGSVLLMAGDKGKRLALPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQ S GF G   D+E  A+++++++  L +IY ++    +E++ + ++RD+ MS  EA
Sbjct: 121 MIHQGSAGFRGNTPDLEVQAKEVLRLRDTLIDIYHRHTNLPHEKLLRDMERDYFMSPYEA 180

Query: 196 CDWGVVDKVL 205
             +G++D V+
Sbjct: 181 QQYGLIDSVI 190


>gi|29840675|ref|NP_829781.1| ATP-dependent Clp protease proteolytic subunit [Chlamydophila
           caviae GPIC]
 gi|33300938|sp|Q821M0|CLPP2_CHLCV RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|29835025|gb|AAP05659.1| ATP-dependent Clp protease, proteolytic subunit [Chlamydophila
           caviae GPIC]
          Length = 203

 Score =  216 bits (551), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 100/199 (50%), Positives = 150/199 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP VVE T RGER+ DIYSRLLK+RIV +  +I + +A  + AQLLFL +E+P+K+I
Sbjct: 1   MTLVPYVVEDTGRGERAMDIYSRLLKDRIVMIGQEITEPLANTVIAQLLFLMSEDPKKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            ++INSPGG +TAG+AIYDT++F+   ++T+C+GQAASMG+LLLSAG KG R+ALP++R+
Sbjct: 61  KVFINSPGGYITAGLAIYDTIRFLGCDVNTYCIGQAASMGALLLSAGTKGKRYALPHSRM 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  G ++DI+  A +I+ +K+ L  I  +  G++ E++ +  +RD  M A EA
Sbjct: 121 MIHQPSGGIIGTSADIQLQAAEILTLKKHLANILSECTGQSVEKIIEDSERDFFMGAEEA 180

Query: 196 CDWGVVDKVLMSRIDIEEK 214
             +G++DKV+ S  D ++K
Sbjct: 181 ISYGLIDKVVSSAKDTKDK 199


>gi|186681335|ref|YP_001864531.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nostoc
           punctiforme PCC 73102]
 gi|186463787|gb|ACC79588.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nostoc
           punctiforme PCC 73102]
          Length = 232

 Score =  216 bits (551), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 99/188 (52%), Positives = 142/188 (75%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VPMVVEQ+  GER++DIYSRLL+ERI+F+   I+D +A  I AQLLFL++E+ +K+I +
Sbjct: 29  IVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPIDDAVANSIVAQLLFLDSEDSEKDIQM 88

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG V AGMAIYDT+Q I+P + T C G AASMG+ LL+AG  G R +LP++RI++
Sbjct: 89  YVNSPGGSVYAGMAIYDTIQQIRPDVVTICFGLAASMGAFLLTAGAAGKRMSLPDSRIMI 148

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA DIE  A++I+ +K +LN++   + G+  E +E   +RD  MSA EA +
Sbjct: 149 HQPLGGAQGQAIDIEIQAREILYVKAKLNQLMSHHTGQPLERIEADTERDFFMSAEEAKN 208

Query: 198 WGVVDKVL 205
           +G++D+V+
Sbjct: 209 YGLIDQVI 216


>gi|221194696|ref|ZP_03567753.1| Clp protease [Atopobium rimae ATCC 49626]
 gi|221185600|gb|EEE17990.1| Clp protease [Atopobium rimae ATCC 49626]
          Length = 206

 Score =  216 bits (549), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 103/193 (53%), Positives = 140/193 (72%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P V+EQT RGERSYDIYSRLL +RIVF+   +    A L+ AQLL LE+++P+K+ISL
Sbjct: 9   LIPYVIEQTPRGERSYDIYSRLLNDRIVFLGEPVTRDSANLVIAQLLHLESQDPEKDISL 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YI+SPGG V AG+ I DTM FIKP +ST C+G AASM ++LL+AG KG R ALPN+ +L+
Sbjct: 69  YIDSPGGDVYAGLGILDTMNFIKPDVSTICVGMAASMAAVLLAAGAKGKRLALPNSMVLI 128

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPS G  GQ +DI+  A +   +++ LNE+  +  G+  E+V    +RD+ M A EA D
Sbjct: 129 HQPSSGVQGQQTDIQIVADETKWLRQHLNELLSEYTGQPLEKVNVDTERDNYMRAQEAAD 188

Query: 198 WGVVDKVLMSRID 210
           +G+VD+V+ SR D
Sbjct: 189 YGLVDRVISSRND 201


>gi|317455555|pdb|3Q7H|A Chain A, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 gi|317455556|pdb|3Q7H|B Chain B, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 gi|317455557|pdb|3Q7H|C Chain C, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 gi|317455558|pdb|3Q7H|D Chain D, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 gi|317455559|pdb|3Q7H|E Chain E, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 gi|317455560|pdb|3Q7H|F Chain F, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 gi|317455561|pdb|3Q7H|G Chain G, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 gi|317455562|pdb|3Q7H|H Chain H, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 gi|317455563|pdb|3Q7H|I Chain I, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 gi|317455564|pdb|3Q7H|J Chain J, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 gi|317455565|pdb|3Q7H|K Chain K, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 gi|317455566|pdb|3Q7H|L Chain L, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 gi|317455567|pdb|3Q7H|M Chain M, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 gi|317455568|pdb|3Q7H|N Chain N, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
          Length = 195

 Score =  216 bits (549), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 104/191 (54%), Positives = 142/191 (74%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP VVEQT+RGER+YDIYSRLLK+R++F+ GQ+EDH A L  AQ LFLE+ENP K+I+L
Sbjct: 4   LVPXVVEQTSRGERAYDIYSRLLKDRVIFLVGQVEDHXANLAIAQXLFLESENPNKDINL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VT+  AIYDT QF+KP + T C+GQAAS G+LLL+ G KG R  LP++ + +
Sbjct: 64  YINSPGGAVTSAXAIYDTXQFVKPDVRTLCIGQAASAGALLLAGGAKGKRHCLPHSSVXI 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQ  GG+ GQ +DI+ HA+   ++  +LN+I  K+ GK  E VEK  +RD+ ++  EA +
Sbjct: 124 HQVLGGYQGQGTDIQIHAKQTQRVSDQLNQILAKHTGKDIERVEKDTNRDYFLTPEEAVE 183

Query: 198 WGVVDKVLMSR 208
           +G++D +   R
Sbjct: 184 YGLIDSIFKER 194


>gi|254722760|ref|ZP_05184548.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A1055]
          Length = 193

 Score =  216 bits (549), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 103/190 (54%), Positives = 136/190 (71%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVEQT  GERSYDIYS LLK+RIV +  +I D +A+ + AQLLFLEAE+ +K+I LY
Sbjct: 4   IPYVVEQTKLGERSYDIYSSLLKDRIVIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLY 63

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I++H
Sbjct: 64  INSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIH 123

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+A EA  +
Sbjct: 124 QPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMTAEEAKAY 183

Query: 199 GVVDKVLMSR 208
           G+VD V+  +
Sbjct: 184 GIVDDVVTKK 193


>gi|328948166|ref|YP_004365503.1| ATP-dependent Clp protease proteolytic subunit [Treponema
           succinifaciens DSM 2489]
 gi|328448490|gb|AEB14206.1| ATP-dependent Clp protease proteolytic subunit [Treponema
           succinifaciens DSM 2489]
          Length = 203

 Score =  216 bits (549), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 97/190 (51%), Positives = 142/190 (74%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P V+E++  GER+YD+YSRLLK+RI+FV G+I D  A LI AQ+L+LE+ENP+K+IS+
Sbjct: 8   LIPTVIERSGNGERAYDLYSRLLKDRIIFVDGEIRDETADLIVAQILYLESENPEKDISM 67

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+AIYDTMQ+++  I T CMGQAASMG+++L+ G  G R+ALP++R+++
Sbjct: 68  YINSPGGSVTAGLAIYDTMQYVRCDIQTICMGQAASMGAIILAGGTIGKRYALPSSRVMI 127

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQ SDI   A++I ++K+   +      GK  E +   ++RD  M A +A +
Sbjct: 128 HQPWGGTQGQESDIAIQAKEIGRLKKLSIKYLSMQTGKKEEVIAADMERDFYMPAEDAKN 187

Query: 198 WGVVDKVLMS 207
           +G++D ++ S
Sbjct: 188 YGIIDHIMNS 197


>gi|196018963|ref|XP_002118901.1| hypothetical protein TRIADDRAFT_34921 [Trichoplax adhaerens]
 gi|190577803|gb|EDV18612.1| hypothetical protein TRIADDRAFT_34921 [Trichoplax adhaerens]
          Length = 139

 Score =  216 bits (549), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 95/139 (68%), Positives = 124/139 (89%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P+V+EQT + ER++DI+SRLLKERI+F++GQ+ED+MA++I AQLLFLE+ENP+K+I
Sbjct: 1   MSYIPVVIEQTPKSERAFDIFSRLLKERIIFLSGQVEDNMASVIIAQLLFLESENPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVV+AG+AIYDTMQ+IK  +ST C+GQA SMGS LL+AGEKG RFALPN+RI
Sbjct: 61  FMYINSPGGVVSAGLAIYDTMQYIKSDVSTLCVGQACSMGSFLLTAGEKGKRFALPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERH 154
           ++HQP GGF GQA+DIE H
Sbjct: 121 MIHQPIGGFRGQATDIEIH 139


>gi|313239506|emb|CBY14435.1| unnamed protein product [Oikopleura dioica]
          Length = 249

 Score =  216 bits (549), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 104/194 (53%), Positives = 141/194 (72%), Gaps = 8/194 (4%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTG------QIEDHMATLICAQLLFLEAENPQ 72
           VP+V+EQ   GER+YDIYSRLLK+RI+ V G      ++ D +A  + AQLLFL ++ P 
Sbjct: 40  VPLVIEQEMGGERTYDIYSRLLKDRIICVFGIFHPRKKVHDQLAAAVVAQLLFLASDKPD 99

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           + I +YINSPGGVVT+GMAIYD MQ I  P+ T+C+G AASMGSLLL+AG  G R+ALPN
Sbjct: 100 QPIKMYINSPGGVVTSGMAIYDCMQLISCPVETWCLGNAASMGSLLLTAGSPGCRYALPN 159

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCG--KTYEEVEKTLDRDHIM 190
           A+I++HQP GG  GQA+DI   A++I + K+ L + YV +    KTYEE    ++RD+ M
Sbjct: 160 AQIMIHQPLGGAQGQATDILIAAKNIDRTKKTLTQTYVTHNAKNKTYEEFFNAMERDNYM 219

Query: 191 SASEACDWGVVDKV 204
           +A EA D+G++DK+
Sbjct: 220 TAQEALDFGIIDKI 233


>gi|89897901|ref|YP_515011.1| ATP-dependent Clp protease proteolytic subunit [Chlamydophila felis
           Fe/C-56]
 gi|116243099|sp|Q256C2|CLPP1_CHLFF RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|89331273|dbj|BAE80866.1| ATP-dependent Clp endopeptidase, ATP-binding proteolytic subunit 2
           [Chlamydophila felis Fe/C-56]
          Length = 203

 Score =  216 bits (549), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 100/199 (50%), Positives = 149/199 (74%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP VVE T RGER+ DIYSRLLK+RIV +  +I + +A  + AQLLFL +E+PQK+I
Sbjct: 1   MTLVPYVVEDTGRGERAMDIYSRLLKDRIVMIGQEITEPLANTVIAQLLFLMSEDPQKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            ++INSPGG +TAG+AIYDT++F+   ++T+C+GQAASMG+LLLSAG KG R+ALP++R+
Sbjct: 61  KVFINSPGGYITAGLAIYDTIRFLGCDVNTYCIGQAASMGALLLSAGTKGKRYALPHSRM 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  G ++DI+  A +I+ +K+ L  I  +  G+  E++ +  +RD  M A +A
Sbjct: 121 MIHQPSGGIIGTSADIQLQAAEILTLKKHLANILSECTGQPVEKIIEDSERDFFMGAEDA 180

Query: 196 CDWGVVDKVLMSRIDIEEK 214
             +G++DKV+ S  D ++K
Sbjct: 181 ISYGLIDKVVSSAKDTKDK 199


>gi|315221928|ref|ZP_07863839.1| Clp protease [Streptococcus anginosus F0211]
 gi|319939597|ref|ZP_08013956.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           anginosus 1_2_62CV]
 gi|315188894|gb|EFU22598.1| Clp protease [Streptococcus anginosus F0211]
 gi|319811186|gb|EFW07492.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           anginosus 1_2_62CV]
          Length = 196

 Score =  215 bits (548), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 102/190 (53%), Positives = 141/190 (74%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  I AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YIN+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  L+
Sbjct: 61  YINTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYLI 120

Query: 138 HQPSGGF-SG-QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP GG  SG Q +D+   A+ ++K +  L +I   N GKT ++V K  +RD+ MSA E 
Sbjct: 121 HQPMGGTGSGTQQTDMAIAAEHLLKTRNNLEKILADNSGKTIKQVHKDAERDYWMSAQET 180

Query: 196 CDWGVVDKVL 205
            D+G +D+++
Sbjct: 181 LDYGFIDEIM 190


>gi|229185008|ref|ZP_04312198.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           BGSC 6E1]
 gi|228598483|gb|EEK56113.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           BGSC 6E1]
          Length = 193

 Score =  215 bits (547), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 103/193 (53%), Positives = 137/193 (70%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P VVEQT  GERSYDIYSRLLK+RIV +  +I D +A+ + AQLLFLEAE+ +K+I
Sbjct: 1   MNAIPYVVEQTKLGERSYDIYSRLLKDRIVIIGSEINDQVASSVVAQLLFLEAEDAEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I
Sbjct: 61  FLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K+K  +N++  +   +  E V    +RD+ M+A EA
Sbjct: 121 MIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTEQPIERVAHDTERDYFMTAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD V+  +
Sbjct: 181 KAYGIVDDVVTKK 193


>gi|160939893|ref|ZP_02087240.1| hypothetical protein CLOBOL_04784 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437327|gb|EDP15092.1| hypothetical protein CLOBOL_04784 [Clostridium bolteae ATCC
           BAA-613]
          Length = 196

 Score =  215 bits (547), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 101/196 (51%), Positives = 140/196 (71%), Gaps = 3/196 (1%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P V+EQT RGERSYDIYSRLL +RI+F+  ++ D  A+LI AQLLFLE+ +P K+I
Sbjct: 1   MSTIPYVIEQTGRGERSYDIYSRLLSDRIIFLGEEVSDTSASLIIAQLLFLESTDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG A+YDTMQ+IK  +ST C+G AAS G+ LL+ G  G R ALPN+ I
Sbjct: 61  QLYINSPGGSVTAGWAVYDTMQYIKCDVSTICLGLAASFGAFLLAGGAHGKRMALPNSEI 120

Query: 136 LLHQPS---GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           ++HQP+    G  G ASDI+  +  + K ++RLN +   N G++ EE+ +  +RD+ MSA
Sbjct: 121 MIHQPAIHGNGIQGPASDIKIMSDYMQKSRQRLNRVLAVNTGRSEEEIARDTERDNFMSA 180

Query: 193 SEACDWGVVDKVLMSR 208
            EA ++G++D +L  R
Sbjct: 181 EEALEYGLIDSILTRR 196


>gi|320332658|ref|YP_004169369.1| ATP-dependent Clp protease proteolytic subunit [Deinococcus
           maricopensis DSM 21211]
 gi|319753947|gb|ADV65704.1| ATP-dependent Clp protease proteolytic subunit [Deinococcus
           maricopensis DSM 21211]
          Length = 201

 Score =  215 bits (547), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 97/190 (51%), Positives = 142/190 (74%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++P V+EQT RGER YDIYSRLLK+RI+F+   I+  +A  I AQLL L+++NP++EI
Sbjct: 1   MSVIPYVIEQTGRGERMYDIYSRLLKDRIIFLGTPIDSQVANTIVAQLLLLDSQNPEREI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG V AG+AIYDTM++IK P+ST C+G A SMGS++L AG+KG R ALPN+RI
Sbjct: 61  QLYINSPGGEVYAGLAIYDTMRYIKAPVSTICVGIAMSMGSVILMAGDKGKRSALPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQ S GF G   D+E  A++ + ++ RL +IY ++    +E++ + ++RD+ MS  EA
Sbjct: 121 MIHQGSSGFRGNTPDVEVQAKETLYLRDRLVDIYHRHTSLPHEKLLRDMERDYFMSPGEA 180

Query: 196 CDWGVVDKVL 205
             +G++D V+
Sbjct: 181 QQYGLIDAVI 190


>gi|269926534|ref|YP_003323157.1| Endopeptidase Clp [Thermobaculum terrenum ATCC BAA-798]
 gi|269790194|gb|ACZ42335.1| Endopeptidase Clp [Thermobaculum terrenum ATCC BAA-798]
          Length = 210

 Score =  214 bits (546), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 100/190 (52%), Positives = 145/190 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+PMV+E TNRGER++DIYSRLLK+RI+ +   I+D +A LI AQLLFL+AE+P+++I  
Sbjct: 8   LIPMVIETTNRGERAFDIYSRLLKDRIIILGTPIDDQIANLIIAQLLFLDAEDPERDIQF 67

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TAG+AIYDTMQF++P I T CMG AASM + LL+AG KG R+ALPNA I +
Sbjct: 68  YINSPGGSITAGLAIYDTMQFVRPDIVTICMGLAASMATPLLAAGTKGKRYALPNATIHM 127

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           H  SGG  G A+D+E+ A+ +++++RR+ E+   + G+  E +E   DR+  M+  EA +
Sbjct: 128 HPASGGAQGAAADVEQQARFLIRMQRRVRELLAMHTGQPLERIEVDFDREKFMTPEEAKE 187

Query: 198 WGVVDKVLMS 207
           +G++D+++ S
Sbjct: 188 YGIIDEIMAS 197


>gi|295395011|ref|ZP_06805223.1| ATP-dependent Clp protease proteolytic subunit [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294972170|gb|EFG48033.1| ATP-dependent Clp protease proteolytic subunit [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 203

 Score =  214 bits (546), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 101/177 (57%), Positives = 130/177 (73%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IY+RLLKERI+++  ++ D  A  ICAQL+ L AE+P+K+I LYINSPGG VTAGMAIYD
Sbjct: 21  IYNRLLKERIIWLGSEVRDSNANAICAQLMLLAAEDPEKDIWLYINSPGGSVTAGMAIYD 80

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ+IKP + T  MG AASMG  LLSAG KG RFA P+ARIL+HQP GG  G A+DI+  
Sbjct: 81  TMQYIKPDVGTVAMGMAASMGQFLLSAGAKGKRFATPHARILMHQPLGGIGGTATDIKIQ 140

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           A+ I+ +KR++ EI  +  GKT E++ K  DRDH  +A EA D+G +DKV+    D+
Sbjct: 141 AELILHMKRQMAEITAEQTGKTVEQILKDNDRDHWFTADEALDYGFIDKVVTHAADV 197


>gi|282891306|ref|ZP_06299808.1| hypothetical protein pah_c050o084 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498803|gb|EFB41120.1| hypothetical protein pah_c050o084 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 202

 Score =  214 bits (546), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 98/193 (50%), Positives = 144/193 (74%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
           F  L P V+E T RGERS DI+SRLL++RIVF+   I D +A ++ AQLLFL+ E+P+K+
Sbjct: 7   FNSLTPYVIEDTARGERSMDIFSRLLQDRIVFIGTDITDQVANIVVAQLLFLKMEDPKKD 66

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           + LYINS GG +T+G+AIYDT++++   ++T+C+GQA+SMG+LLL AG KG RFALPN+R
Sbjct: 67  VHLYINSMGGYITSGLAIYDTLRWMTCDVNTYCIGQASSMGALLLMAGTKGKRFALPNSR 126

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQPSGG  G +SDI   A++I+ +KR L+EI     G++ E +    +RD  MS  E
Sbjct: 127 IMIHQPSGGVGGTSSDIMLQAKEILVLKRSLHEIMAGATGQSVERIAADSERDFYMSPQE 186

Query: 195 ACDWGVVDKVLMS 207
           A ++G++D+V+ +
Sbjct: 187 AKEYGIIDEVVTT 199


>gi|220906939|ref|YP_002482250.1| ATP-dependent Clp protease proteolytic subunit [Cyanothece sp. PCC
           7425]
 gi|219863550|gb|ACL43889.1| Endopeptidase Clp [Cyanothece sp. PCC 7425]
          Length = 198

 Score =  214 bits (545), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 98/175 (56%), Positives = 136/175 (77%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           DIY+RL +ERI+F+  +++D +A  I A +L+L++E+P K+I LYINSPGG VTAGMAIY
Sbjct: 22  DIYNRLYRERIIFLGKEVDDEIANQIVAVMLYLDSEDPGKDIVLYINSPGGSVTAGMAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           DTMQ IK  + T C+G AASMGS LL+AG  G R ALP++RI++HQPSGG  GQASDIE 
Sbjct: 82  DTMQHIKSDVVTICVGLAASMGSFLLTAGAPGKRLALPHSRIMIHQPSGGTRGQASDIEI 141

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
            A++I++I+ +LN+IY    G+  E++EK +DRD+ MSA EA D+G++D+V+  R
Sbjct: 142 EAREIIRIRHQLNQIYADRTGQPLEKIEKDIDRDYFMSAQEAKDYGLIDRVIEDR 196


>gi|257077641|ref|ZP_05572002.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis JH1]
 gi|256985671|gb|EEU72973.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis JH1]
          Length = 176

 Score =  214 bits (545), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 96/176 (54%), Positives = 137/176 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQ++RGER+YDIYSRLLK+RI+ ++G I+D++A  + AQLLFL+A++ +K+I
Sbjct: 1   MNLIPTVIEQSSRGERAYDIYSRLLKDRIIMLSGPIDDNVANSVIAQLLFLDAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG V+AG+AI+DTM F+K  + T  +G AASMGS LL+AG+KG RFALPNA I
Sbjct: 61  YLYINSPGGSVSAGLAIFDTMNFVKADVQTIVLGMAASMGSFLLTAGQKGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           ++HQP GG  GQA++IE  A+ I+  ++RLN I  +  G+  E +E+  DRD+ M+
Sbjct: 121 MIHQPLGGAQGQATEIEIAARHILDTRQRLNSILAERTGQPIEVIERDTDRDNYMT 176


>gi|256371559|ref|YP_003109383.1| Endopeptidase Clp [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008143|gb|ACU53710.1| Endopeptidase Clp [Acidimicrobium ferrooxidans DSM 10331]
          Length = 204

 Score =  214 bits (545), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 100/191 (52%), Positives = 151/191 (79%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+E ++RGER+YD+YSRLL+ERI+ +   I+D +A L+C+Q+L+LE E+P ++I+L
Sbjct: 11  LVPTVIETSSRGERAYDLYSRLLRERIIILGTPIDDAVANLVCSQMLYLEYEDPDRDINL 70

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTM+F++P +STFC GQAAS  +++L+AG KG RFALP+ARILL
Sbjct: 71  YINSPGGEITALFAIYDTMRFVRPDVSTFCFGQAASAAAVILAAGAKGKRFALPHARILL 130

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I++++  LNE+  +  G+  E + +  DRD ++ A +A +
Sbjct: 131 HQPYGGVGGQATDIEIQAKEILRMRDLLNEMLAEATGQPVERIAQDTDRDFVLEAPQAVE 190

Query: 198 WGVVDKVLMSR 208
           +G++D+V+++R
Sbjct: 191 YGLIDEVVVAR 201


>gi|42781876|ref|NP_979123.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus ATCC 10987]
 gi|67460501|sp|Q736T1|CLPP1_BACC1 RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|42737800|gb|AAS41731.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus ATCC 10987]
          Length = 193

 Score =  214 bits (545), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 101/187 (54%), Positives = 134/187 (71%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ +K+I LY
Sbjct: 4   IPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLY 63

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG   AG AI D M  I P + T CMG AAS G+LLL AG KG RFALPN+ I++H
Sbjct: 64  INSPGGSTXAGFAILDXMNLIXPEVQTLCMGLAASFGALLLLAGAKGKRFALPNSEIMIH 123

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA++IE  A+ I+K+K  +N+I     G+  E++    +RD+ M+A EA ++
Sbjct: 124 QPLGGVKGQATEIEITAKRILKLKHDINKIIADRTGQPIEKIAHDTERDYFMTAEEAKEY 183

Query: 199 GVVDKVL 205
           G+VD V+
Sbjct: 184 GIVDGVV 190


>gi|116490635|ref|YP_810179.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oenococcus
           oeni PSU-1]
 gi|290890048|ref|ZP_06553131.1| hypothetical protein AWRIB429_0521 [Oenococcus oeni AWRIB429]
 gi|116091360|gb|ABJ56514.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oenococcus
           oeni PSU-1]
 gi|290480239|gb|EFD88880.1| hypothetical protein AWRIB429_0521 [Oenococcus oeni AWRIB429]
          Length = 198

 Score =  214 bits (545), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 103/201 (51%), Positives = 141/201 (70%), Gaps = 6/201 (2%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           + P V+EQT  G  SYD+ SRLLK+RI+ V G++ED MAT I AQLLFL+A++P K+I +
Sbjct: 1   MWPGVIEQTANGRESYDLPSRLLKDRIILVQGEVEDQMATSIVAQLLFLDAQDPNKDIYM 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGMAI DTM FI+  + T  MG AASM +++ S+G KG RF LPNA  L+
Sbjct: 61  YINSPGGSVTAGMAIVDTMNFIRSDVQTIVMGMAASMATIIASSGTKGKRFMLPNAEYLI 120

Query: 138 HQPSGGFSG--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP GG     Q +D+   A  ++K ++RLN I  +N GK  E++EK  +RDH M + E 
Sbjct: 121 HQPMGGAGAGTQQTDMSIIADQLLKTRKRLNNILKENSGKPIEKIEKDTERDHWMDSKET 180

Query: 196 CDWGVVDKVLMSRIDIEEKSK 216
            D+G++DK+L+++    EK+K
Sbjct: 181 LDYGLIDKILINK----EKNK 197


>gi|149528358|ref|XP_001515048.1| PREDICTED: similar to ClpP caseinolytic peptidase, ATP-dependent,
           proteolytic subunit homolog (E. coli), partial
           [Ornithorhynchus anatinus]
          Length = 430

 Score =  214 bits (545), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 99/153 (64%), Positives = 130/153 (84%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P+VVEQT RGER+YDIYSRLL+ERI+ V G I+D +A+L+ AQLLFL++E+ +K I +YI
Sbjct: 270 PIVVEQTGRGERAYDIYSRLLRERIICVMGPIDDSLASLVIAQLLFLQSESNKKPIHMYI 329

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGGVVT+G+AIYDTMQ+I  PI T+C+GQAASMGSLLL+AG  GMR +LPN+RI++HQ
Sbjct: 330 NSPGGVVTSGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIHQ 389

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKN 172
           PSGG  GQA+DI   A++I+K+K++L  IY K+
Sbjct: 390 PSGGARGQATDIAIQAEEIMKLKKQLYGIYAKH 422


>gi|284929721|ref|YP_003422243.1| ATP-dependent Clp protease proteolytic subunit ClpP [cyanobacterium
           UCYN-A]
 gi|284810165|gb|ADB95862.1| ATP-dependent Clp protease proteolytic subunit ClpP [cyanobacterium
           UCYN-A]
          Length = 200

 Score =  214 bits (544), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 97/188 (51%), Positives = 140/188 (74%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+E + RGER++DIYSRLL+ERIVF+  ++ D  + LI AQLLFLEAE+P+++I L
Sbjct: 1   MIPTVIETSGRGERAFDIYSRLLRERIVFLGQEVRDENSNLIVAQLLFLEAEDPERDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V++G+ I+DTM  I+P + T C G AASMG+ LLSAG KG R +LPN+RI++
Sbjct: 61  YINSPGGSVSSGLGIFDTMNKIQPDVCTVCTGLAASMGAFLLSAGAKGKRMSLPNSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+ +K  LN     + G+   ++ +  +RD  MSA EA +
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYLKSLLNNHLADHTGQPLSKIAEDTERDFFMSAEEAKN 180

Query: 198 WGVVDKVL 205
           +G++D+V+
Sbjct: 181 YGLIDQVI 188


>gi|15834704|ref|NP_296463.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia muridarum
           Nigg]
 gi|270284870|ref|ZP_06194264.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia muridarum
           Nigg]
 gi|270288897|ref|ZP_06195199.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia muridarum
           Weiss]
 gi|301336249|ref|ZP_07224451.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia muridarum
           MopnTet14]
 gi|14194531|sp|Q9PLM0|CLPP2_CHLMU RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|7190114|gb|AAF38961.1| ATP-dependent Clp protease, proteolytic subunit [Chlamydia
           muridarum Nigg]
          Length = 203

 Score =  214 bits (544), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 99/200 (49%), Positives = 150/200 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP VVE T RGER+ DIYSRLLK+RIV +  +I + +A  + AQLLFL +E+P K+I
Sbjct: 1   MTLVPYVVEDTGRGERAMDIYSRLLKDRIVMIGQEITEPLANTVIAQLLFLMSEDPTKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            ++INSPGG +TAG+AIYDT++F+   ++T+C+GQAASMG+LLLSAG KG R+ALP++R+
Sbjct: 61  QIFINSPGGYITAGLAIYDTIRFLGCDVNTYCIGQAASMGALLLSAGTKGKRYALPHSRM 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  G ++DI+  A +I+ +K+ L+ I  +  G+  E++ +  +RD  M A EA
Sbjct: 121 MIHQPSGGIIGTSADIQLQAAEILTLKKHLSNILAECTGQPVEKIIEDSERDFFMGAEEA 180

Query: 196 CDWGVVDKVLMSRIDIEEKS 215
             +G++DKV+ S  + ++K+
Sbjct: 181 IAYGLIDKVVSSAKETKDKN 200


>gi|329943257|ref|ZP_08292031.1| clp protease family protein [Chlamydophila psittaci Cal10]
 gi|328814804|gb|EGF84794.1| clp protease family protein [Chlamydophila psittaci Cal10]
 gi|328915097|gb|AEB55930.1| Clp protease [Chlamydophila psittaci 6BC]
          Length = 203

 Score =  214 bits (544), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 99/199 (49%), Positives = 149/199 (74%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP VVE T RGER+ DIYSRLLK+RIV +  +I + +A  + AQLLFL +E+P+K+I
Sbjct: 1   MTLVPYVVEDTGRGERAMDIYSRLLKDRIVMIGQEITEPLANTVIAQLLFLMSEDPKKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            ++INSPGG +TAG+AIYDT++F+   ++T+C+GQAASMG+LLLSAG KG R+ALP++R+
Sbjct: 61  KVFINSPGGYITAGLAIYDTIRFLGCDVNTYCIGQAASMGALLLSAGTKGKRYALPHSRM 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  G ++DI+  A +I+ +K+ L  I  +  G+  E++ +  +RD  M A +A
Sbjct: 121 MIHQPSGGIIGTSADIQLQAAEILTLKKHLANILSECTGQPVEKIIEDSERDFFMGAEDA 180

Query: 196 CDWGVVDKVLMSRIDIEEK 214
             +G++DKV+ S  D ++K
Sbjct: 181 ISYGLIDKVVSSAKDTKDK 199


>gi|62185490|ref|YP_220275.1| ATP-dependent Clp protease proteolytic subunit [Chlamydophila
           abortus S26/3]
 gi|81312362|sp|Q5L4W7|CLPP2_CHLAB RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|62148557|emb|CAH64328.1| ATP-dependent Clp protease proteolytic subunit [Chlamydophila
           abortus S26/3]
 gi|313848408|emb|CBY17412.1| ATP-dependent Clp protease proteolytic subunit [Chlamydophila
           psittaci RD1]
          Length = 205

 Score =  214 bits (544), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 99/199 (49%), Positives = 149/199 (74%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP VVE T RGER+ DIYSRLLK+RIV +  +I + +A  + AQLLFL +E+P+K+I
Sbjct: 3   MTLVPYVVEDTGRGERAMDIYSRLLKDRIVMIGQEITEPLANTVIAQLLFLMSEDPKKDI 62

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            ++INSPGG +TAG+AIYDT++F+   ++T+C+GQAASMG+LLLSAG KG R+ALP++R+
Sbjct: 63  KVFINSPGGYITAGLAIYDTIRFLGCDVNTYCIGQAASMGALLLSAGTKGKRYALPHSRM 122

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  G ++DI+  A +I+ +K+ L  I  +  G+  E++ +  +RD  M A +A
Sbjct: 123 MIHQPSGGIIGTSADIQLQAAEILTLKKHLANILSECTGQPVEKIIEDSERDFFMGAEDA 182

Query: 196 CDWGVVDKVLMSRIDIEEK 214
             +G++DKV+ S  D ++K
Sbjct: 183 ISYGLIDKVVSSAKDTKDK 201


>gi|224534182|ref|ZP_03674761.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           spielmanii A14S]
 gi|224514543|gb|EEF84858.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           spielmanii A14S]
          Length = 197

 Score =  214 bits (544), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 97/189 (51%), Positives = 141/189 (74%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P V+E T   ER +DIYSRLL+ERI+F++G+I D  A  + AQLLFLE+E+  K+I L
Sbjct: 7   LIPTVIEHTGNYERVFDIYSRLLRERIIFLSGEINDLKADTVIAQLLFLESEDSNKDIYL 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG +TAG+AIYDTMQ+IKP + T C+GQAASMG+ LL+AG KG R +L  +RI++
Sbjct: 67  YLNSPGGSITAGLAIYDTMQYIKPDVRTICIGQAASMGAFLLAAGAKGKRESLTYSRIMI 126

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG SGQASDI   A +I+++K+ + +I     G   E++   ++RD+ M++S+A  
Sbjct: 127 HQPWGGISGQASDINIQANEILRLKKLIIDIMSNQIGVDKEKLALDMERDYFMTSSDALK 186

Query: 198 WGVVDKVLM 206
           +G++D +L+
Sbjct: 187 YGLIDSILV 195


>gi|302335570|ref|YP_003800777.1| ATP-dependent Clp protease proteolytic subunit ClpP [Olsenella uli
           DSM 7084]
 gi|301319410|gb|ADK67897.1| ATP-dependent Clp protease proteolytic subunit ClpP [Olsenella uli
           DSM 7084]
          Length = 204

 Score =  214 bits (544), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 102/193 (52%), Positives = 139/193 (72%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P V+EQT RGERSYDIYSRLL +RIVF+  +I    A L+ AQLL LE+++P K+ISL
Sbjct: 9   LIPYVIEQTPRGERSYDIYSRLLNDRIVFLGEEITRDSANLVIAQLLHLESQDPDKDISL 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YI+SPGG V AG+ I DTM FIKP +ST C+G AASM S+LL+AG  G R ALPN+ I++
Sbjct: 69  YIDSPGGEVYAGLGILDTMNFIKPDVSTICVGMAASMASVLLAAGTPGKRLALPNSMIMI 128

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPS G  GQ +DI+  A +   I+  +NE+  +  G++ E++    +RD+ + ASEA  
Sbjct: 129 HQPSSGAQGQQTDIQIVADETKWIRNHMNELLAQYTGQSVEKINADTERDNYLRASEAAA 188

Query: 198 WGVVDKVLMSRID 210
           +G+VDKV+ SR +
Sbjct: 189 YGLVDKVISSRTE 201


>gi|111115440|ref|YP_710058.1| ATP-dependent Clp protease proteolytic component [Borrelia afzelii
           PKo]
 gi|216263526|ref|ZP_03435521.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           afzelii ACA-1]
 gi|123145670|sp|Q0SMP6|CLPP_BORAP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|110890714|gb|ABH01882.1| ATP-dependent Clp protease proteolytic component [Borrelia afzelii
           PKo]
 gi|215980370|gb|EEC21191.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           afzelii ACA-1]
          Length = 197

 Score =  213 bits (543), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 97/189 (51%), Positives = 141/189 (74%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P V+E T   ER +DIYSRLL+ERI+F++G+I D  A  + AQLLFLE+E+  K+I L
Sbjct: 7   LIPTVIEHTGNYERVFDIYSRLLRERIIFLSGEINDPKADTVIAQLLFLESEDSNKDIYL 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG +TAG+AIYDTMQ+IKP + T C+GQAASMG+ LL+AG KG R +L  +RI++
Sbjct: 67  YLNSPGGSITAGLAIYDTMQYIKPDVRTICIGQAASMGAFLLAAGAKGKRESLTYSRIMI 126

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG SGQASDI   A +I+++K+ + +I     G   E++   ++RD+ M++S+A  
Sbjct: 127 HQPWGGISGQASDINIQANEILRLKKLIIDIMSNQIGVDKEKLALDMERDYFMTSSDALK 186

Query: 198 WGVVDKVLM 206
           +G++D +L+
Sbjct: 187 YGLIDNILV 195


>gi|67924586|ref|ZP_00518001.1| Peptidase S14, ClpP [Crocosphaera watsonii WH 8501]
 gi|67853560|gb|EAM48904.1| Peptidase S14, ClpP [Crocosphaera watsonii WH 8501]
          Length = 202

 Score =  213 bits (543), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 99/191 (51%), Positives = 141/191 (73%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+E + RGER++DIYSRLL+ERIVF+  ++ D  + LI AQLLFLEAE+P K+I L
Sbjct: 1   MIPTVIETSGRGERAFDIYSRLLRERIVFLGQEVRDENSNLIVAQLLFLEAEDPDKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG+ I+DTM  I+P + T C+G AASMG+ LLSAG KG R +LPN+RI++
Sbjct: 61  YINSPGGSVSAGLGIFDTMNQIRPDVCTICIGLAASMGAFLLSAGTKGKRMSLPNSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+ +K  LN     +  +  +++ +  +RD  MSA EA +
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYLKGLLNNHLASHTEQPLDKIAEDTERDFFMSAEEAQE 180

Query: 198 WGVVDKVLMSR 208
           +G++D+V+  R
Sbjct: 181 YGLIDQVINRR 191


>gi|56961817|ref|YP_173539.1| ATP-dependent Clp protease proteolytic subunit [Bacillus clausii
           KSM-K16]
 gi|67460457|sp|Q5WLZ7|CLPP1_BACSK RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|56908051|dbj|BAD62578.1| ATP-dependent Clp protease proteolytic subunit [Bacillus clausii
           KSM-K16]
          Length = 193

 Score =  213 bits (543), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 98/187 (52%), Positives = 137/187 (73%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+EQT  GERSYDIYSRLLK+RI+F+  +I D +A  + AQLLFL + +P+K+IS+Y
Sbjct: 5   IPYVMEQTRYGERSYDIYSRLLKDRIIFIGDEITDTLANSVTAQLLFLASTDPEKDISIY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG V+AG AI DTM +IKP I T C G AAS  ++LL  G KG R ALP+A +++H
Sbjct: 65  INSPGGSVSAGFAILDTMLYIKPDIQTICTGMAASFAAVLLVGGTKGKRCALPHAEVMIH 124

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQASD++ +AQ I+K ++ +N    +  G+T +++    +RD+ MSA+EA D+
Sbjct: 125 QPHGGMKGQASDMDIYAQRILKQRKEINHFIAERTGQTPDKIATDSERDYFMSAAEAKDY 184

Query: 199 GVVDKVL 205
           GV+D +L
Sbjct: 185 GVIDNIL 191


>gi|257784419|ref|YP_003179636.1| Endopeptidase Clp [Atopobium parvulum DSM 20469]
 gi|257472926|gb|ACV51045.1| Endopeptidase Clp [Atopobium parvulum DSM 20469]
          Length = 202

 Score =  213 bits (543), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 101/192 (52%), Positives = 138/192 (71%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+EQT RGERSYDIYSRLL +RIVF+   +    A L+ AQLL LE+++P K+ISLY
Sbjct: 10  IPYVIEQTPRGERSYDIYSRLLNDRIVFLGEPVTRDSANLVIAQLLHLESQDPDKDISLY 69

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           I+SPGG V AG+ I DTM FIKP +ST C+G AASM ++LL+AG KG R ALPN+ +++H
Sbjct: 70  IDSPGGDVYAGLGILDTMNFIKPDVSTICVGMAASMSAVLLAAGAKGKRLALPNSMVMIH 129

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPS G  GQ +DI+  A +   I+  +NE+     G++ E+V    +RD+ + A EACD+
Sbjct: 130 QPSSGVQGQQTDIQIVADETKWIREHINELLSDYTGQSIEKVNVDTERDNYLRAQEACDY 189

Query: 199 GVVDKVLMSRID 210
           G+VD+V+ SR D
Sbjct: 190 GLVDRVISSRND 201


>gi|257452229|ref|ZP_05617528.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           3_1_5R]
 gi|257465976|ref|ZP_05630287.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315917132|ref|ZP_07913372.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|317058772|ref|ZP_07923257.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           3_1_5R]
 gi|313684448|gb|EFS21283.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           3_1_5R]
 gi|313691007|gb|EFS27842.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 195

 Score =  213 bits (542), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 101/192 (52%), Positives = 143/192 (74%), Gaps = 3/192 (1%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P V++   R ER +DI+SRLL++RI+F+  ++ D +A  + AQLL+LEAE+P K+I LYI
Sbjct: 4   PTVIDNDGRQERHFDIFSRLLRDRIIFLGTEVNDQVAASLVAQLLYLEAEDPTKDIILYI 63

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V+AG+AIYDTM ++KP I T C+GQAASMG+ LLSAG KG RFAL N+RI++HQ
Sbjct: 64  NSPGGSVSAGLAIYDTMNYVKPDIQTVCIGQAASMGAFLLSAGTKGKRFALENSRIMIHQ 123

Query: 140 PSGGF-SG--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           P GG  SG  QA+D++  A+++   K +L  I  KN GKT EEV +  +RD+ ++A EA 
Sbjct: 124 PLGGTGSGYHQATDVQIIAKELQATKEKLASIIAKNSGKTTEEVLEDTERDNYLTAEEAV 183

Query: 197 DWGVVDKVLMSR 208
           ++G++D V+ +R
Sbjct: 184 NYGLIDMVMKAR 195


>gi|313891327|ref|ZP_07824945.1| endopeptidase Clp [Streptococcus pseudoporcinus SPIN 20026]
 gi|313120394|gb|EFR43515.1| endopeptidase Clp [Streptococcus pseudoporcinus SPIN 20026]
          Length = 196

 Score =  213 bits (542), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 99/190 (52%), Positives = 142/190 (74%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  I AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  L+
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYLI 120

Query: 138 HQPSGGF-SG-QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP GG  SG Q +D+   A+ ++K ++RL +I   N GKT +++ K  +RD+ M A E 
Sbjct: 121 HQPMGGAGSGTQQTDMAIVAEQLLKTRKRLEKILADNSGKTIKQIHKDAERDYWMDAKET 180

Query: 196 CDWGVVDKVL 205
            ++G +D+++
Sbjct: 181 LEYGFIDEIM 190


>gi|221218018|ref|ZP_03589484.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi 72a]
 gi|221191966|gb|EEE18187.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi 72a]
          Length = 194

 Score =  213 bits (542), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 96/189 (50%), Positives = 140/189 (74%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P V+E T   ER +DIYSRLL+ERI+F++G+I D  A  + AQLLFLE+E+  K+I L
Sbjct: 4   LIPTVIENTGNYERVFDIYSRLLRERIIFLSGEINDSKADTVIAQLLFLESEDSSKDIYL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG +TAG+AIYDTMQ+IKP + T C+GQAASMG+ LL+ G KG R +L  +RI++
Sbjct: 64  YLNSPGGSITAGLAIYDTMQYIKPDVRTICIGQAASMGAFLLAGGAKGKRESLTYSRIMI 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG SGQASDI   A +I+++K+ + +I     G   E++   ++RD+ M++S+A  
Sbjct: 124 HQPWGGISGQASDINIQANEILRLKKLIIDIMSNQIGVDKEKLALDMERDYFMTSSDALK 183

Query: 198 WGVVDKVLM 206
           +G++D +L+
Sbjct: 184 YGLIDSILV 192


>gi|158335482|ref|YP_001516654.1| ATP-dependent Clp protease proteolytic subunit [Acaryochloris
           marina MBIC11017]
 gi|158305723|gb|ABW27340.1| ATP-dependent Clp protease, proteolytic subunit ClpP, putative
           [Acaryochloris marina MBIC11017]
          Length = 198

 Score =  213 bits (541), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 98/179 (54%), Positives = 137/179 (76%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ER  DIY+RL +ERI+F+  ++ D +A  I A LL+L++E+P K IS+YINSPGG VTAG
Sbjct: 18  ERWVDIYTRLSQERIIFLGQEVTDGLANQIVAFLLYLDSEDPSKPISIYINSPGGSVTAG 77

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
           +AIYDTMQ IK  ++T C+G AASMGS LL+AG  G R ALP++RI++HQPSGG  GQAS
Sbjct: 78  LAIYDTMQHIKSEVATICVGLAASMGSFLLAAGSPGKRLALPHSRIMIHQPSGGARGQAS 137

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           DIE  A++I++++R+LN+IY     +  E++EK +DRD  MSA EA ++G++D+V+  R
Sbjct: 138 DIEIEAKEIIRVRRQLNDIYAARTAQPLEKIEKDMDRDFFMSAHEALEYGLIDQVIEER 196


>gi|302384943|ref|YP_003820765.1| Endopeptidase Clp [Clostridium saccharolyticum WM1]
 gi|302195571|gb|ADL03142.1| Endopeptidase Clp [Clostridium saccharolyticum WM1]
          Length = 197

 Score =  213 bits (541), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 98/190 (51%), Positives = 142/190 (74%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+PMV+EQT RGERSYDI+SRLL +RI+ + G + +  A+LI AQ+LFLE+ +  K+I+L
Sbjct: 4   LIPMVIEQTTRGERSYDIFSRLLNDRIIMLNGTVTNETASLIMAQMLFLESADCTKDINL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VT G AI DTM +IK  +ST  +GQ+ S  SLLL++G+KG RFAL N+ IL+
Sbjct: 64  YINSPGGSVTDGFAIMDTMNYIKCDVSTISIGQSGSAASLLLASGKKGKRFALKNSEILI 123

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQA+DI  H++ + + K +L+EIY +  G+    +++ ++RDH ++A EA
Sbjct: 124 HQPSISGGLQGQATDIRIHSEWLERTKEKLHEIYSRLTGQPLNRIQEDMERDHYLTAEEA 183

Query: 196 CDWGVVDKVL 205
            D+G++D++L
Sbjct: 184 KDYGLIDEIL 193


>gi|118586974|ref|ZP_01544406.1| ATP-dependent Clp protease, proteolytic subunit [Oenococcus oeni
           ATCC BAA-1163]
 gi|45597799|emb|CAE54287.1| ClpP protease [Oenococcus oeni]
 gi|118432596|gb|EAV39330.1| ATP-dependent Clp protease, proteolytic subunit [Oenococcus oeni
           ATCC BAA-1163]
          Length = 202

 Score =  213 bits (541), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 100/189 (52%), Positives = 134/189 (70%), Gaps = 2/189 (1%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P V+EQT  G  SYD+ SRLLK+RI+ V G++ED MAT I AQLLFL+A++P K+I +YI
Sbjct: 3   PGVIEQTANGRESYDLPSRLLKDRIILVQGEVEDQMATSIVAQLLFLDAQDPNKDIYMYI 62

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VTAGMAI DTM FI+  + T  MG AASM +++ S+G KG RF LPNA  L+HQ
Sbjct: 63  NSPGGSVTAGMAIVDTMNFIRSDVQTIVMGMAASMATIIASSGTKGKRFMLPNAEYLIHQ 122

Query: 140 PSGGFSG--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           P GG     Q +D+   A  ++K ++RLN I  +N GK  E++EK  +RDH M + E  D
Sbjct: 123 PMGGAGAGTQQTDMSIIADQLLKTRKRLNNILKENSGKPIEKIEKDTERDHWMDSKETLD 182

Query: 198 WGVVDKVLM 206
           +G++DK+L+
Sbjct: 183 YGLIDKILI 191


>gi|22298615|ref|NP_681862.1| ATP-dependent Clp protease proteolytic subunit [Thermosynechococcus
           elongatus BP-1]
 gi|34222549|sp|Q8DJZ9|CLPP2_THEEB RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|22294795|dbj|BAC08624.1| ATP-dependent Clp protease proteolytic subunit 2
           [Thermosynechococcus elongatus BP-1]
          Length = 198

 Score =  213 bits (541), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 96/175 (54%), Positives = 138/175 (78%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           DIY+RL +ERI+F+  +++D +A  I A +L+L++E+P K+I LYINSPGG VTAGMAIY
Sbjct: 22  DIYNRLYRERIIFLGKEVDDEIANQIVAVMLYLDSEDPGKDIMLYINSPGGSVTAGMAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           DTMQ IK  + T C+G AASMGS LL+AG KG R ALP++RI++HQPSGG  GQA+DIE 
Sbjct: 82  DTMQHIKSDVVTICVGLAASMGSFLLAAGTKGKRLALPHSRIMIHQPSGGTRGQATDIEI 141

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
            A++I++++R+LNE+Y  + G+  E++E+ +DRD  MSA EA ++G++D+V+  R
Sbjct: 142 EAREILRVRRQLNELYAYHTGQPLEKIERDMDRDFFMSAEEAKNYGLIDRVIEER 196


>gi|254446451|ref|ZP_05059927.1| Clp protease [Verrucomicrobiae bacterium DG1235]
 gi|198260759|gb|EDY85067.1| Clp protease [Verrucomicrobiae bacterium DG1235]
          Length = 182

 Score =  212 bits (540), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 94/171 (54%), Positives = 134/171 (78%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           DIYSRLLK+RIVF+   I D +A  I AQLLFL+ E+P+K+I++YINSPGG VT+GMAIY
Sbjct: 2   DIYSRLLKDRIVFIGTPINDEIANAIIAQLLFLQMEDPKKDINVYINSPGGSVTSGMAIY 61

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           DTM F+   +ST+C+G AASMG++LL+ G KG R+ALPN+R+++HQPSGG  GQASDI  
Sbjct: 62  DTMNFLSCEVSTWCIGMAASMGTILLAGGTKGKRYALPNSRVMIHQPSGGAGGQASDISI 121

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            A++I++ +  LN++  +  G++ E ++K  DRD+ M++ EA ++GV+DKV
Sbjct: 122 QAKEIIRWRETLNKVLAEKTGQSVERIQKDSDRDYWMTSQEALEYGVIDKV 172


>gi|326693258|ref|ZP_08230263.1| ATP-dependent Clp protease proteolytic subunit [Leuconostoc
           argentinum KCTC 3773]
          Length = 200

 Score =  212 bits (540), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 103/188 (54%), Positives = 133/188 (70%), Gaps = 2/188 (1%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P V+EQT  G  SYD+ SRLLK+RIV V G+IED MAT I AQLLFLEA++P KEIS+YI
Sbjct: 3   PGVIEQTANGRESYDLPSRLLKDRIVLVQGEIEDSMATSIVAQLLFLEAQDPTKEISMYI 62

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VTAG++I DTM FIK P++T  MG AASMG+++ S+GEKG RF LPNA  L+HQ
Sbjct: 63  NSPGGSVTAGLSITDTMNFIKAPVTTIVMGLAASMGTIIASSGEKGHRFMLPNAEYLIHQ 122

Query: 140 PSGGFSG--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           P GG +G  Q +D+   A+ + K + +LN I     GK  E +    +RD+ MSA E  +
Sbjct: 123 PMGGAAGGTQQTDMAIIAEQLTKTRAKLNRILADASGKDLETIAHDTERDYWMSAEETLE 182

Query: 198 WGVVDKVL 205
           +G +D +L
Sbjct: 183 YGFIDGIL 190


>gi|222152607|ref|YP_002561782.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           uberis 0140J]
 gi|254763804|sp|B9DTU8|CLPP_STRU0 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|222113418|emb|CAR41093.1| putative ATP-dependent Clp protease proteolytic subunit
           [Streptococcus uberis 0140J]
          Length = 196

 Score =  212 bits (540), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 99/190 (52%), Positives = 141/190 (74%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  I AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  L+
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYLI 120

Query: 138 HQPSGGF-SG-QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP GG  SG Q +D+   A+ ++K ++RL +I   N GKT +++ K  +RD+ M A E 
Sbjct: 121 HQPMGGTGSGTQQTDMAIVAEQLLKTRKRLEKILSDNSGKTIKQIHKDAERDYWMDAKET 180

Query: 196 CDWGVVDKVL 205
            ++G +D ++
Sbjct: 181 LEYGFIDAIM 190


>gi|288574917|ref|ZP_06393274.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570658|gb|EFC92215.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 192

 Score =  212 bits (540), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 99/190 (52%), Positives = 138/190 (72%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+EQT RGERSYDIYSRLLK+RIVF+  +I D +A  + AQ+LFLE+ENP K+I  Y
Sbjct: 3   IPYVIEQTGRGERSYDIYSRLLKDRIVFIGDEINDGLANSVIAQMLFLESENPDKDIYFY 62

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TAG+AIYDTMQ++K  IST  +G AASM ++LL+AG  G R +LP +R+++H
Sbjct: 63  INSPGGSTTAGLAIYDTMQYVKCDISTIVVGIAASMAAVLLTAGTAGKRVSLPRSRVMIH 122

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  G+ASD+    ++I+  K  LN I   + G+ ++++ +  ++D  MSA EA  +
Sbjct: 123 QPWGGARGKASDMAIQVKEILHTKETLNRILADHSGQDFDKICEDTEKDFYMSADEAMAY 182

Query: 199 GVVDKVLMSR 208
           G+VDKV+  R
Sbjct: 183 GLVDKVIDRR 192


>gi|148242503|ref|YP_001227660.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           RCC307]
 gi|147850813|emb|CAK28307.1| Protease subunit of ATP-dependent Clp protease [Synechococcus sp.
           RCC307]
          Length = 196

 Score =  212 bits (540), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 98/191 (51%), Positives = 139/191 (72%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+E++ RGER++DIYSRLL+ERI+F+   +    A  I AQLLFLEAE+P K+I L
Sbjct: 1   MIPIVIEESGRGERAFDIYSRLLRERIIFMGEPVTAESANRIVAQLLFLEAEDPDKDIFL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I+DTMQ +KP + T C+G AASMG+ LL+AG  G R +L ++RI++
Sbjct: 61  YINSPGGSVYDGLGIFDTMQHVKPDVQTVCVGLAASMGAFLLAAGAPGKRSSLQHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A +I+ +K+RLNE   +  G+  + ++K  DRD  MS +EA +
Sbjct: 121 HQPLGGAQGQASDIRIQADEILFLKKRLNEELAQRTGQPLDRIQKDTDRDFFMSPAEAAE 180

Query: 198 WGVVDKVLMSR 208
           +G++DKV+  R
Sbjct: 181 YGLIDKVIDQR 191


>gi|301167838|emb|CBW27423.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           [Bacteriovorax marinus SJ]
          Length = 202

 Score =  212 bits (539), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 97/188 (51%), Positives = 139/188 (73%), Gaps = 2/188 (1%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P+V+EQT RGER YDIYSRLL +RIVF+  Q+ D +A LI AQ+LFLE ++P   I  YI
Sbjct: 11  PIVIEQTARGERQYDIYSRLLLDRIVFLGTQVNDTVANLIMAQMLFLETDDPDAPIHFYI 70

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V AG+ IYD MQ+I  P+ T+C+G AASMGSLLL+AG +G R+++P++RI++HQ
Sbjct: 71  NSPGGSVYAGLGIYDVMQYISCPVHTYCVGLAASMGSLLLTAGAEGHRYSMPHSRIMIHQ 130

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK--TYEEVEKTLDRDHIMSASEACD 197
           P GG  GQ SDI+  A++I  +K +LN IY+K+  K  + +++    DRD+ +S +EA +
Sbjct: 131 PLGGAQGQCSDIQIQAKEIQDLKDQLNGIYIKHSAKEMSMDKIVAATDRDNYLSPTEAIE 190

Query: 198 WGVVDKVL 205
            G++D ++
Sbjct: 191 LGIIDHII 198


>gi|225551910|ref|ZP_03772850.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia sp.
           SV1]
 gi|225370908|gb|EEH00338.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia sp.
           SV1]
          Length = 194

 Score =  212 bits (539), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 96/189 (50%), Positives = 140/189 (74%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P V+E T   ER +DIYSRLL+ERI+F++G+I D  A  + AQLLFLE+E+  K+I L
Sbjct: 4   LIPTVIENTGNYERVFDIYSRLLRERIIFLSGEINDPKADTVIAQLLFLESEDSNKDIYL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG +TAG+AIYDTMQ+IKP + T C+GQAASMG+ LL+ G KG R +L  +RI++
Sbjct: 64  YLNSPGGSITAGLAIYDTMQYIKPDVRTICIGQAASMGAFLLAGGAKGKRESLTYSRIMI 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG SGQASDI   A +I+++K+ + +I     G   E++   ++RD+ M++S+A  
Sbjct: 124 HQPWGGISGQASDINIQANEILRLKKLIIDIMSNQIGVDKEKLALDMERDYFMTSSDALK 183

Query: 198 WGVVDKVLM 206
           +G++D +L+
Sbjct: 184 YGLIDSILV 192


>gi|291569210|dbj|BAI91482.1| ATP-dependent Clp protease proteolytic subunit [Arthrospira
           platensis NIES-39]
          Length = 198

 Score =  212 bits (539), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 97/179 (54%), Positives = 138/179 (77%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           E+   IY RL +ERI+F++ +++D +A  I A +L+L++E+P K I LYINSPGG VTAG
Sbjct: 18  EQWIGIYERLFRERIIFLSEEVDDGIANAIVAYMLYLDSEDPSKPIYLYINSPGGSVTAG 77

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
           MAIYDTMQ+IK  + T C+G AASMG+ LL+AG KG R ALPNARI++HQP GG  GQA+
Sbjct: 78  MAIYDTMQYIKSDVVTICVGMAASMGAFLLAAGTKGKRLALPNARIMIHQPLGGTRGQAT 137

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           DIE  A++I++I++ LNE+  +  G+T E++EK  DRD+ MSA+EA ++G++D+V+  R
Sbjct: 138 DIEIEAKEILRIRKVLNEMLAERSGQTLEKIEKDTDRDYFMSAAEAHEYGLIDQVIEER 196


>gi|216264918|ref|ZP_03436910.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi 156a]
 gi|225548921|ref|ZP_03769898.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi 94a]
 gi|226321180|ref|ZP_03796719.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi 29805]
 gi|215981391|gb|EEC22198.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi 156a]
 gi|225370524|gb|EEG99960.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi 94a]
 gi|226233413|gb|EEH32155.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi 29805]
          Length = 194

 Score =  212 bits (539), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 96/189 (50%), Positives = 140/189 (74%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P V+E T   ER +DIYSRLL+ERI+F++G+I D  A  + AQLLFLE+E+  K+I L
Sbjct: 4   LIPTVIENTGNYERVFDIYSRLLRERIIFLSGEINDPKADTVIAQLLFLESEDSSKDIYL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG +TAG+AIYDTMQ+IKP + T C+GQAASMG+ LL+ G KG R +L  +RI++
Sbjct: 64  YLNSPGGSITAGLAIYDTMQYIKPDVRTICIGQAASMGAFLLAGGAKGKRESLTYSRIMI 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG SGQASDI   A +I+++K+ + +I     G   E++   ++RD+ M++S+A  
Sbjct: 124 HQPWGGISGQASDINIQANEILRLKKLIIDIMSNQIGVDKEKLALDMERDYFMTSSDALK 183

Query: 198 WGVVDKVLM 206
           +G++D +L+
Sbjct: 184 YGLIDSILV 192


>gi|254409743|ref|ZP_05023524.1| Clp protease [Microcoleus chthonoplastes PCC 7420]
 gi|196183740|gb|EDX78723.1| Clp protease [Microcoleus chthonoplastes PCC 7420]
          Length = 198

 Score =  212 bits (539), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 96/175 (54%), Positives = 137/175 (78%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           DIY+RL +ERI+F+  +++D +   I A +L+L++E+  K+I LYINSPGG VTAGMAIY
Sbjct: 22  DIYNRLYRERIIFLGKEVDDEITNQIIAVMLYLDSEDNNKDIYLYINSPGGSVTAGMAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           DTMQ IK  + T C+G AASMGS LL+AG++G R ALP++RI++HQPSGG  GQA+DIE 
Sbjct: 82  DTMQHIKSDVVTICVGLAASMGSFLLTAGKQGKRLALPHSRIMIHQPSGGVRGQATDIEI 141

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
            A++I++I+R+LN+IY    G+T E++EK +DRD  MSA EA ++G++D+V+  R
Sbjct: 142 EAREILRIRRQLNQIYADKTGQTVEKIEKDIDRDFFMSAQEAKEYGLIDRVIEER 196


>gi|224533546|ref|ZP_03674135.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi CA-11.2a]
 gi|224513219|gb|EEF83581.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi CA-11.2a]
          Length = 194

 Score =  212 bits (539), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 96/189 (50%), Positives = 140/189 (74%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P V+E T   ER +DIYSRLL+ERI+F++G+I D  A  + AQLLFLE+E+  K+I L
Sbjct: 4   LIPTVIENTGNYERVFDIYSRLLRERIIFLSGEINDPKADTVIAQLLFLESEDSSKDIYL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG +TAG+AIYDTMQ+IKP + T C+GQAASMG+ LL+ G KG R +L  +RI++
Sbjct: 64  YLNSPGGSITAGLAIYDTMQYIKPDVRTICIGQAASMGAFLLAGGTKGKRESLTYSRIMI 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG SGQASDI   A +I+++K+ + +I     G   E++   ++RD+ M++S+A  
Sbjct: 124 HQPWGGISGQASDINIQANEILRLKKLIIDIMSNQIGVDKEKLALDMERDYFMTSSDALK 183

Query: 198 WGVVDKVLM 206
           +G++D +L+
Sbjct: 184 YGLIDSILV 192


>gi|195941431|ref|ZP_03086813.1| ATP-dependent Clp protease proteolytic component (clpP-1) [Borrelia
           burgdorferi 80a]
 gi|218249848|ref|YP_002375116.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi ZS7]
 gi|223889055|ref|ZP_03623645.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi 64b]
 gi|224532428|ref|ZP_03673055.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi WI91-23]
 gi|225549547|ref|ZP_03770513.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi 118a]
 gi|226321916|ref|ZP_03797442.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi Bol26]
 gi|218165036|gb|ACK75097.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi ZS7]
 gi|223885481|gb|EEF56581.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi 64b]
 gi|224512638|gb|EEF83012.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi WI91-23]
 gi|225369824|gb|EEG99271.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi 118a]
 gi|226233105|gb|EEH31858.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi Bol26]
 gi|312147788|gb|ADQ30447.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi JD1]
 gi|312149314|gb|ADQ29385.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi N40]
          Length = 194

 Score =  212 bits (539), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 96/189 (50%), Positives = 140/189 (74%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P V+E T   ER +DIYSRLL+ERI+F++G+I D  A  + AQLLFLE+E+  K+I L
Sbjct: 4   LIPTVIENTGNYERVFDIYSRLLRERIIFLSGEINDPKADTVIAQLLFLESEDSSKDIYL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG +TAG+AIYDTMQ+IKP + T C+GQAASMG+ LL+ G KG R +L  +RI++
Sbjct: 64  YLNSPGGSITAGLAIYDTMQYIKPDVRTICIGQAASMGAFLLAGGAKGKRESLTYSRIMI 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG SGQASDI   A +I+++K+ + +I     G   E++   ++RD+ M++S+A  
Sbjct: 124 HQPWGGISGQASDINIQANEILRLKKLIIDIMSNQIGVDKEKLALDMERDYFMTSSDALK 183

Query: 198 WGVVDKVLM 206
           +G++D +L+
Sbjct: 184 YGLIDSILV 192


>gi|225419706|ref|ZP_03762009.1| hypothetical protein CLOSTASPAR_06044 [Clostridium asparagiforme
           DSM 15981]
 gi|225041643|gb|EEG51889.1| hypothetical protein CLOSTASPAR_06044 [Clostridium asparagiforme
           DSM 15981]
          Length = 198

 Score =  211 bits (538), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 102/193 (52%), Positives = 142/193 (73%), Gaps = 3/193 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P+VVEQT RGERSYDIYSRLL +RI+F+  ++ +  A+LI A+LLFLEA++PQK++  Y
Sbjct: 4   IPIVVEQTGRGERSYDIYSRLLSDRIIFLGEEVSETSASLIIAELLFLEAQDPQKDVQFY 63

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG AIYDTM+ I+  +ST C+G AAS G+ LL+ G +G R ALPN++I++H
Sbjct: 64  INSPGGSVTAGFAIYDTMRHIRCDVSTICIGLAASFGAFLLAGGTRGKRLALPNSQIMIH 123

Query: 139 QP--SG-GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           QP  SG G  G ASDI   +  + K ++RLN I  +N G T  E+E+  +RD+ MSA EA
Sbjct: 124 QPAMSGRGIQGPASDILIMSDYMQKSRQRLNRILAENTGHTPLEIERDTERDNFMSAEEA 183

Query: 196 CDWGVVDKVLMSR 208
            ++G++D ++  R
Sbjct: 184 LEYGLIDSIIAKR 196


>gi|15594956|ref|NP_212745.1| ATP-dependent Clp protease proteolytic subunit [Borrelia
           burgdorferi B31]
 gi|18202051|sp|O51556|CLPP1_BORBU RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|2688532|gb|AAC66964.1| ATP-dependent Clp protease proteolytic component (clpP-1) [Borrelia
           burgdorferi B31]
          Length = 197

 Score =  211 bits (538), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 96/189 (50%), Positives = 140/189 (74%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P V+E T   ER +DIYSRLL+ERI+F++G+I D  A  + AQLLFLE+E+  K+I L
Sbjct: 7   LIPTVIENTGNYERVFDIYSRLLRERIIFLSGEINDPKADTVIAQLLFLESEDSSKDIYL 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG +TAG+AIYDTMQ+IKP + T C+GQAASMG+ LL+ G KG R +L  +RI++
Sbjct: 67  YLNSPGGSITAGLAIYDTMQYIKPDVRTICIGQAASMGAFLLAGGAKGKRESLTYSRIMI 126

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG SGQASDI   A +I+++K+ + +I     G   E++   ++RD+ M++S+A  
Sbjct: 127 HQPWGGISGQASDINIQANEILRLKKLIIDIMSNQIGVDKEKLALDMERDYFMTSSDALK 186

Query: 198 WGVVDKVLM 206
           +G++D +L+
Sbjct: 187 YGLIDSILV 195


>gi|330443929|ref|YP_004376915.1| Clp protease [Chlamydophila pecorum E58]
 gi|328807039|gb|AEB41212.1| Clp protease [Chlamydophila pecorum E58]
          Length = 204

 Score =  211 bits (538), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 98/199 (49%), Positives = 148/199 (74%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP VVE T RGER+ DIYSRLLK+RIV +  +I + +A  + AQLLFL +E+P+K+I
Sbjct: 1   MTLVPYVVEDTGRGERAMDIYSRLLKDRIVMIGQEITEPLANTVIAQLLFLMSEDPKKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            ++INSPGG +TAG+AIYDT++F+   ++T+C+GQAASMG+LLLSAG  G R+ALP++R+
Sbjct: 61  QIFINSPGGYITAGLAIYDTIRFLGCDVNTYCIGQAASMGALLLSAGTPGKRYALPHSRM 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  G ++DI+  A +I+ +K+ L  I  +  G+  E++ +  +RD  M A EA
Sbjct: 121 MIHQPSGGIIGTSADIQLQAAEILTLKKHLANILSECTGQPVEKIIEDSERDFFMGAEEA 180

Query: 196 CDWGVVDKVLMSRIDIEEK 214
             +G++DKV+ S  + ++K
Sbjct: 181 ISYGLIDKVVTSAKETKDK 199


>gi|15618756|ref|NP_225042.1| ATP-dependent Clp protease proteolytic subunit [Chlamydophila
           pneumoniae CWL029]
 gi|15836380|ref|NP_300904.1| ATP-dependent Clp protease proteolytic subunit [Chlamydophila
           pneumoniae J138]
 gi|16752192|ref|NP_445559.1| ATP-dependent Clp protease proteolytic subunit [Chlamydophila
           pneumoniae AR39]
 gi|33242207|ref|NP_877148.1| ATP-dependent Clp protease proteolytic subunit [Chlamydophila
           pneumoniae TW-183]
 gi|6831514|sp|Q9Z759|CLPP2_CHLPN RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|4377162|gb|AAD18985.1| CLP Protease Subunit [Chlamydophila pneumoniae CWL029]
 gi|7189935|gb|AAF38798.1| ATP-dependent Clp protease, proteolytic subunit [Chlamydophila
           pneumoniae AR39]
 gi|8979221|dbj|BAA99055.1| CLP protease subunit [Chlamydophila pneumoniae J138]
 gi|33236718|gb|AAP98805.1| ATP-dependent clp protease proteolytic subunit [Chlamydophila
           pneumoniae TW-183]
 gi|269302633|gb|ACZ32733.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP
           [Chlamydophila pneumoniae LPCoLN]
          Length = 203

 Score =  211 bits (537), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 98/192 (51%), Positives = 144/192 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP VVE T RGER+ DIYSRLLK+RIV +  +I + +A  + AQLLFL +E+P+K+I
Sbjct: 1   MTLVPYVVEDTGRGERAMDIYSRLLKDRIVMIGQEITEPLANTVIAQLLFLMSEDPKKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            ++INSPGG +TAG+AIYDT++F+   ++T+C+GQAASMG+LLLSAG KG R ALP++R+
Sbjct: 61  QIFINSPGGYITAGLAIYDTIRFLGCDVNTYCIGQAASMGALLLSAGTKGKRHALPHSRM 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  G ++DI+  A +I+ +K+ L  I  +  G+  E++ +  +RD  M A EA
Sbjct: 121 MIHQPSGGIIGTSADIQLQAAEILTLKKHLANILSECTGQPVEKIIEDSERDFFMGAEEA 180

Query: 196 CDWGVVDKVLMS 207
             +G++DKV+ S
Sbjct: 181 ISYGLIDKVVTS 192


>gi|255027871|ref|ZP_05299857.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes FSL J2-003]
          Length = 167

 Score =  211 bits (537), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 96/167 (57%), Positives = 129/167 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT+RGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL+A++P+K+I
Sbjct: 1   MNLIPTVIEQTSRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG ++AGMAIYDTM F+K  + T  MG AASMGS LL+AG  G RFALPNA I
Sbjct: 61  FLYINSPGGSISAGMAIYDTMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
           ++HQP GG  GQA++IE  A+ I+KIK R+N I  +  G+ YE + +
Sbjct: 121 MIHQPLGGAQGQATEIEIAARHILKIKERMNTIMAEKTGQPYEVIAR 167


>gi|224532269|ref|ZP_03672901.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           valaisiana VS116]
 gi|224511734|gb|EEF82140.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           valaisiana VS116]
          Length = 197

 Score =  211 bits (536), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 95/189 (50%), Positives = 141/189 (74%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P V+E T   ER +DIYSRLL+ERI+F++G+I D  A  + AQLLFLE+E+  K+I L
Sbjct: 7   LIPTVIEHTGNYERVFDIYSRLLRERIIFLSGEINDPKADTVIAQLLFLESEDSSKDIYL 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG +TAG+AIYDTMQ+IKP + T C+GQAASMG+ LL++G KG R +L  +RI++
Sbjct: 67  YLNSPGGSITAGLAIYDTMQYIKPDVRTICIGQAASMGAFLLASGAKGKRESLTYSRIMI 126

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG SGQASDI   A +I+++K+ + +I     G   E++   ++RD+ M++++A  
Sbjct: 127 HQPWGGISGQASDINIQANEILRLKKLIIDIMSNQIGIDKEKLALDMERDYFMTSNDALK 186

Query: 198 WGVVDKVLM 206
           +G++D +L+
Sbjct: 187 YGLIDSILV 195


>gi|51598863|ref|YP_073051.1| ATP-dependent Clp protease proteolytic subunit [Borrelia garinii
           PBi]
 gi|67460252|sp|Q660R2|CLPP_BORGA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|51573434|gb|AAU07459.1| ATP-dependent Clp protease proteolytic component [Borrelia garinii
           PBi]
          Length = 194

 Score =  211 bits (536), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 95/189 (50%), Positives = 140/189 (74%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P V+E T   ER +DIYSRLL+ERI+F++G+I D  A  + AQLLFLE+E+  K+I L
Sbjct: 4   LIPTVIEHTGNYERVFDIYSRLLRERIIFLSGEINDLKADTVIAQLLFLESEDSNKDIYL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG +TAG+AIYDTMQ+IKP + T C+GQAASMG+ LL+ G KG R +L  +RI++
Sbjct: 64  YLNSPGGSITAGLAIYDTMQYIKPDVRTICIGQAASMGAFLLAGGAKGKRESLAYSRIMI 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG SGQASDI   A +I+++K+ + +I     G   E++   ++RD+ M++++A  
Sbjct: 124 HQPWGGISGQASDINIQANEILRLKKLIIDIMSNQIGIDKEKLALDMERDYFMTSNDALK 183

Query: 198 WGVVDKVLM 206
           +G++D +L+
Sbjct: 184 YGLIDSILV 192


>gi|318041532|ref|ZP_07973488.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           CB0101]
          Length = 196

 Score =  210 bits (535), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 98/191 (51%), Positives = 138/191 (72%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+E++ RGER++DIYSRLL+ERI+F+   +    A  I AQLLFLEAE+P+K+I L
Sbjct: 1   MIPIVIEESGRGERAFDIYSRLLRERIIFLGEPVTSESANRIVAQLLFLEAEDPEKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I+DTMQ IKP + T C+G AASMG+ LL AG KG R +L ++RI++
Sbjct: 61  YINSPGGSVYDGLGIFDTMQHIKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLTHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A +I+ +K++LN+      G+    +E+  DRD  MS +EA +
Sbjct: 121 HQPLGGARGQASDIRIQADEILYLKKKLNQELADRTGQPLSRIEEDTDRDFFMSPAEAAE 180

Query: 198 WGVVDKVLMSR 208
           +G++DKV+  R
Sbjct: 181 YGLIDKVIDKR 191


>gi|329116784|ref|ZP_08245501.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Streptococcus parauberis NCFD 2020]
 gi|326907189|gb|EGE54103.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Streptococcus parauberis NCFD 2020]
          Length = 196

 Score =  210 bits (535), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 97/190 (51%), Positives = 138/190 (72%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  I AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  L+
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYLI 120

Query: 138 HQPSGGFSG--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP GG     Q SD+   A+ ++K ++RL +I   N GKT + + +  +RD+ M A E 
Sbjct: 121 HQPMGGAGNGTQQSDMAIVAEQLLKTRKRLEKILADNSGKTIKVIHRDAERDYWMDAKET 180

Query: 196 CDWGVVDKVL 205
             +G +D+++
Sbjct: 181 LAYGFIDEIM 190


>gi|325507187|gb|ADZ18825.1| ATP-dependent Clp protease proteolytic subunit [Chlamydophila
           psittaci 6BC]
          Length = 200

 Score =  210 bits (535), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 97/196 (49%), Positives = 147/196 (75%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVE T RGER+ DIYSRLLK+RIV +  +I + +A  + AQLLFL +E+P+K+I ++
Sbjct: 1   MPYVVEDTGRGERAMDIYSRLLKDRIVMIGQEITEPLANTVIAQLLFLMSEDPKKDIKVF 60

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG +TAG+AIYDT++F+   ++T+C+GQAASMG+LLLSAG KG R+ALP++R+++H
Sbjct: 61  INSPGGYITAGLAIYDTIRFLGCDVNTYCIGQAASMGALLLSAGTKGKRYALPHSRMMIH 120

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  G ++DI+  A +I+ +K+ L  I  +  G+  E++ +  +RD  M A +A  +
Sbjct: 121 QPSGGIIGTSADIQLQAAEILTLKKHLANILSECTGQPVEKIIEDSERDFFMGAEDAISY 180

Query: 199 GVVDKVLMSRIDIEEK 214
           G++DKV+ S  D ++K
Sbjct: 181 GLIDKVVSSAKDTKDK 196


>gi|300087790|ref|YP_003758312.1| endopeptidase Clp [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527523|gb|ADJ25991.1| Endopeptidase Clp [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 205

 Score =  210 bits (535), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 96/188 (51%), Positives = 140/188 (74%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++PMV+E ++RGERS+DIYS LLKERIVF+  +I D +A  I AQLLFL+ E+P K+ISL
Sbjct: 10  IIPMVIESSSRGERSFDIYSLLLKERIVFLGTEINDQVANTIIAQLLFLDREDPDKDISL 69

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YI+SPGGV++AG+AIYDT+Q I+P +ST C+G AASM ++LL AG KG RFALPN+ I +
Sbjct: 70  YIHSPGGVISAGLAIYDTIQLIRPKVSTICVGMAASMATVLLCAGAKGKRFALPNSTIHM 129

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQ  GG  GQASDI   A++I +++  + +I     G+  +++    DRD+ ++  +A +
Sbjct: 130 HQAIGGARGQASDIVIQAKEITRLQDIIRDILAARTGQPLDKIIHDTDRDYYLNPVQAKE 189

Query: 198 WGVVDKVL 205
           +G++D +L
Sbjct: 190 YGLIDDIL 197


>gi|125718530|ref|YP_001035663.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           sanguinis SK36]
 gi|166214716|sp|A3CPK8|CLPP_STRSV RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|125498447|gb|ABN45113.1| ATP-dependent Clp protease, proteolytic subunit, putative
           [Streptococcus sanguinis SK36]
          Length = 196

 Score =  210 bits (534), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 98/190 (51%), Positives = 142/190 (74%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  I AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  L+
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGVAASMGTIIASSGAKGKRFMLPNAEYLI 120

Query: 138 HQPSGGF-SG-QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP GG  SG Q +D+   A+ +++ +  L +I  +N GK+ E++ K  +RD+ MSA E 
Sbjct: 121 HQPMGGAGSGTQQTDMAIVAEHLLRTRNTLEKILAENSGKSVEQIHKDAERDYWMSAQET 180

Query: 196 CDWGVVDKVL 205
            ++G +D+++
Sbjct: 181 LEYGFIDEIM 190


>gi|224500839|ref|ZP_03669188.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes Finland 1988]
          Length = 164

 Score =  210 bits (534), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 96/163 (58%), Positives = 127/163 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT+RGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL+A++P+K+I
Sbjct: 1   MNLIPTVIEQTSRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG ++AGMAIYDTM F+K  + T  MG AASMGS LL+AG  G RFALPNA I
Sbjct: 61  FLYINSPGGSISAGMAIYDTMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYE 178
           ++HQP GG  GQA++IE  A+ I+KIK R+N I  +  G+ YE
Sbjct: 121 MIHQPLGGAQGQATEIEIAARHILKIKERMNTIMAEKTGQPYE 163


>gi|330975104|gb|EGH75170.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. aptata str. DSM 50252]
          Length = 150

 Score =  210 bits (534), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 95/133 (71%), Positives = 114/133 (85%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+EQ+ RGER+YDIYSRLLKER++F+ G +ED+MA LI AQLLFLEAENP K+I 
Sbjct: 18  GLVPMVIEQSARGERAYDIYSRLLKERVIFMVGPVEDYMANLIAAQLLFLEAENPDKDIH 77

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+ LL+ G +G R  LPN+R++
Sbjct: 78  LYINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAGGAEGKRHCLPNSRMM 137

Query: 137 LHQPSGGFSGQAS 149
           +HQP GGF GQAS
Sbjct: 138 IHQPLGGFQGQAS 150


>gi|317970010|ref|ZP_07971400.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           CB0205]
          Length = 196

 Score =  209 bits (533), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 99/191 (51%), Positives = 137/191 (71%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+E++ RGER++DIYSRLL+ERIVF+   +    A  I AQLLFLEAE+P+K+I L
Sbjct: 1   MIPIVIEESGRGERAFDIYSRLLRERIVFLGEPVTSESANRIVAQLLFLEAEDPEKDIFL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I+DTMQ IKP + T C+G AASMG+ LL AG KG R +L ++RI++
Sbjct: 61  YINSPGGSVYDGLGIFDTMQHIKPDVQTVCVGLAASMGAFLLCAGAKGKRSSLTHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A +I+ +K++LN+      G+    +E   DRD  MS +EA +
Sbjct: 121 HQPLGGAQGQASDIRIQADEILYLKKKLNQELSDRTGQPLNRIEDDTDRDFFMSPAEAVE 180

Query: 198 WGVVDKVLMSR 208
           +G++DKV+  R
Sbjct: 181 YGLIDKVIDKR 191


>gi|170016746|ref|YP_001727665.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Leuconostoc
           citreum KM20]
 gi|259585959|sp|B1MXG9|CLPP_LEUCK RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|169803603|gb|ACA82221.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Leuconostoc
           citreum KM20]
          Length = 200

 Score =  209 bits (533), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 101/190 (53%), Positives = 133/190 (70%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           + P V+EQT  G  SYD+ SRLLK+RIV V G++ED MAT I AQLLFLEA++P KEIS+
Sbjct: 1   MWPGVIEQTANGRESYDLPSRLLKDRIVLVQGEVEDSMATSIVAQLLFLEAQDPTKEISM 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG++I DTM FIK P++T  MG AASMG+++ S+GEKG RF LPNA  L+
Sbjct: 61  YINSPGGSVTAGLSITDTMNFIKAPVTTIVMGLAASMGTIIASSGEKGHRFMLPNAEYLI 120

Query: 138 HQPSGGFSG--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP GG  G  Q +D+   A+ + K + +LN+I      +  E + +  +RDH MSA E 
Sbjct: 121 HQPMGGAVGGTQQTDMAIIAEQLTKTRDKLNKILADASDRDLETIARDTERDHWMSAEET 180

Query: 196 CDWGVVDKVL 205
             +G +D +L
Sbjct: 181 LAYGFIDGIL 190


>gi|219684233|ref|ZP_03539177.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           garinii PBr]
 gi|219685103|ref|ZP_03539923.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           garinii Far04]
 gi|219672222|gb|EED29275.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           garinii PBr]
 gi|219673199|gb|EED30218.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           garinii Far04]
          Length = 197

 Score =  209 bits (533), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 94/189 (49%), Positives = 140/189 (74%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P V+E T   ER +DIYSRLL+ERI+F++G+I D  A  + AQLLFLE+E+  K+I L
Sbjct: 7   LIPTVIEHTGNYERVFDIYSRLLRERIIFLSGEINDPKADTVIAQLLFLESEDSNKDIYL 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG +TAG+AIYDTMQ+IKP + T C+GQAASMG+ LL+ G +G R +L  +RI++
Sbjct: 67  YLNSPGGSITAGLAIYDTMQYIKPDVRTICIGQAASMGAFLLAGGARGKRESLAYSRIMI 126

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG SGQASDI   A +I+++K+ + +I     G   E++   ++RD+ M++++A  
Sbjct: 127 HQPWGGISGQASDINIQANEILRLKKLIIDIMSNQIGVDKEKLALDMERDYFMTSNDALK 186

Query: 198 WGVVDKVLM 206
           +G++D +L+
Sbjct: 187 YGLIDSILV 195


>gi|324991352|gb|EGC23285.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           sanguinis SK353]
 gi|325690651|gb|EGD32652.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           sanguinis SK115]
 gi|325694980|gb|EGD36884.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           sanguinis SK150]
          Length = 196

 Score =  209 bits (533), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 97/190 (51%), Positives = 142/190 (74%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDNTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  L+
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGVAASMGTIIASSGAKGKRFMLPNAEYLI 120

Query: 138 HQPSGGF-SG-QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP GG  SG Q +D+   A+ +++ +  L +I  +N GK+ E++ K  +RD+ MSA E 
Sbjct: 121 HQPMGGAGSGTQQTDMAIVAEHLLRTRNTLEKILAENSGKSVEQIHKDAERDYWMSAQET 180

Query: 196 CDWGVVDKVL 205
            ++G +D+++
Sbjct: 181 LEYGFIDEIM 190


>gi|323351064|ref|ZP_08086721.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           sanguinis VMC66]
 gi|322122788|gb|EFX94497.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           sanguinis VMC66]
 gi|324993705|gb|EGC25624.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           sanguinis SK405]
 gi|324994982|gb|EGC26895.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           sanguinis SK678]
 gi|325687068|gb|EGD29091.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           sanguinis SK72]
 gi|325696303|gb|EGD38194.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           sanguinis SK160]
 gi|327462975|gb|EGF09296.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           sanguinis SK1]
 gi|327470480|gb|EGF15936.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           sanguinis SK330]
 gi|327474578|gb|EGF19983.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           sanguinis SK408]
 gi|327490136|gb|EGF21924.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           sanguinis SK1058]
 gi|328946905|gb|EGG41042.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           sanguinis SK1087]
          Length = 196

 Score =  209 bits (533), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 97/190 (51%), Positives = 142/190 (74%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDNTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  L+
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGVAASMGTIIASSGAKGKRFMLPNAEYLI 120

Query: 138 HQPSGGF-SG-QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP GG  SG Q +D+   A+ +++ +  L +I  +N GK+ E++ K  +RD+ MSA E 
Sbjct: 121 HQPMGGAGSGTQQTDMAIVAEHLLRTRNTLEKILAENSGKSVEQIHKDAERDYWMSAQET 180

Query: 196 CDWGVVDKVL 205
            ++G +D+++
Sbjct: 181 LEYGFIDEIM 190


>gi|125623498|ref|YP_001031981.1| ATP-dependent Clp protease proteolytic subunit [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|18203672|sp|Q9ZAB0|CLPP_LACLM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|11528583|gb|AAD01866.2| protease [Lactococcus lactis subsp. cremoris MG1363]
 gi|124492306|emb|CAL97240.1| ATP-dependent Clp protease proteolytic subunit [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|300070250|gb|ADJ59650.1| ATP-dependent Clp protease proteolytic subunit [Lactococcus lactis
           subsp. cremoris NZ9000]
          Length = 199

 Score =  209 bits (533), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 96/190 (50%), Positives = 137/190 (72%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ++RGER+YDIYSRLLK+RI+ +TG +ED MA  I AQLLFL+A++  K+I L
Sbjct: 4   LVPTVIEQSSRGERAYDIYSRLLKDRIIMLTGPVEDGMANSIIAQLLFLDAQDNTKDIYL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  L+
Sbjct: 64  YVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYLI 123

Query: 138 HQPSGGF--SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP GG     Q +D+   A+ ++K ++RL +I   N  ++ E++ K  +RDH M A E 
Sbjct: 124 HQPMGGAGQGTQQTDMAIVAEQLLKTRKRLEQILADNSNRSLEQIHKDAERDHWMDAKET 183

Query: 196 CDWGVVDKVL 205
            ++G +D+++
Sbjct: 184 LEYGFIDEIM 193


>gi|327462069|gb|EGF08398.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           sanguinis SK1057]
          Length = 196

 Score =  209 bits (532), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 97/190 (51%), Positives = 142/190 (74%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDNTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  L+
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGVAASMGTVIASSGAKGKRFMLPNAEYLI 120

Query: 138 HQPSGGF-SG-QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP GG  SG Q +D+   A+ +++ +  L +I  +N GK+ E++ K  +RD+ MSA E 
Sbjct: 121 HQPMGGAGSGTQQTDMAIVAEHLLRTRNTLEKILAENSGKSVEQIHKDAERDYWMSAQET 180

Query: 196 CDWGVVDKVL 205
            ++G +D+++
Sbjct: 181 LEYGFIDEIM 190


>gi|160945107|ref|ZP_02092333.1| hypothetical protein FAEPRAM212_02626 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442838|gb|EDP19843.1| hypothetical protein FAEPRAM212_02626 [Faecalibacterium prausnitzii
           M21/2]
          Length = 229

 Score =  209 bits (532), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 103/213 (48%), Positives = 154/213 (72%), Gaps = 5/213 (2%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           ++F    K   E  F+  VP VVEQ+  GERSYDI+SRLL +RI+ ++  + D  A+L+ 
Sbjct: 17  VNFANKLKPFQEANFMSFVPYVVEQSAHGERSYDIFSRLLNDRIIVLSEDVNDTTASLVV 76

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLL+LE ++P K+ISLYINSPGG ++AGMAI+DTMQ+IK  +ST CMG AASMG+ LL+
Sbjct: 77  AQLLYLEGQDPDKDISLYINSPGGSISAGMAIHDTMQYIKCDVSTICMGMAASMGAFLLA 136

Query: 121 AGEKGMRFALPNARILLHQP-----SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK 175
           +G KG RFALPNA I++HQP      GG SGQ +DI+ HA+ +V I+ ++N +  +  G+
Sbjct: 137 SGTKGKRFALPNAEIMIHQPLIGGQGGGLSGQTTDIKIHAEHMVYIRDKMNRMLSEYTGQ 196

Query: 176 TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
             E++++  +RD+ ++A +A ++G++D+V+  R
Sbjct: 197 PLEKIQQDTERDNYLTAQQAKEYGLIDEVIAHR 229


>gi|218440358|ref|YP_002378687.1| ATP-dependent Clp protease proteolytic subunit ClpP [Cyanothece sp.
           PCC 7424]
 gi|218173086|gb|ACK71819.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
           sp. PCC 7424]
          Length = 203

 Score =  209 bits (532), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 96/191 (50%), Positives = 140/191 (73%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+E + RGER++DIYSRLL++RIVF+  ++ + +A  I AQLLFLE+E+P K+I L
Sbjct: 1   MIPTVIESSGRGERAFDIYSRLLRDRIVFLGQEVTNDLANTIVAQLLFLESEDPDKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG+ I+DTM  I+P + T C+G AASMG+ LL AG K  R +LPN+RI++
Sbjct: 61  YINSPGGSVSAGLGIFDTMNQIRPDVCTICIGLAASMGAFLLCAGAKDKRMSLPNSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+ +K  LN+      G+  E++ +  +RD  MSA EA +
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYLKGLLNQHLASRTGQPLEKIAEDTERDFFMSAEEAQE 180

Query: 198 WGVVDKVLMSR 208
           +G++D+V+  R
Sbjct: 181 YGLIDQVINRR 191


>gi|295100804|emb|CBK98349.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Faecalibacterium prausnitzii L2-6]
          Length = 199

 Score =  209 bits (532), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 102/199 (51%), Positives = 148/199 (74%), Gaps = 6/199 (3%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP VVEQ+  GERSYDI+SRLL +RI+ ++  + D  A+L+ AQLL+LE ++P K+I
Sbjct: 1   MSFVPYVVEQSAHGERSYDIFSRLLNDRIIVLSEDVNDTSASLVVAQLLYLEGQDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG ++AGMAI+DT+Q+IK  +ST CMG AASMG+ LL++G KG RFALPNA I
Sbjct: 61  SLYINSPGGSISAGMAIHDTIQYIKCDVSTICMGMAASMGAFLLASGTKGKRFALPNAEI 120

Query: 136 LLHQP------SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           ++HQP       GG SGQA+DI+ HA  I++ + ++N +  +  G+  E+VE+  +RD+ 
Sbjct: 121 MIHQPLIAGGQGGGLSGQATDIKIHADHIIRTRAKMNRLLSEYTGQPLEKVEQDTERDNF 180

Query: 190 MSASEACDWGVVDKVLMSR 208
           +SA EA ++G++D+V+  R
Sbjct: 181 LSAQEAKEYGLIDEVITHR 199


>gi|327348449|gb|EGE77306.1| ATP-dependent Clp protease proteolytic subunit [Ajellomyces
           dermatitidis ATCC 18188]
          Length = 222

 Score =  209 bits (531), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 95/174 (54%), Positives = 133/174 (76%), Gaps = 2/174 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
            P V E    G  +YDI+SRLLKERIV + G++++ ++  I AQLLFLEA+NP+K I LY
Sbjct: 37  TPFVTETVGGGWHTYDIFSRLLKERIVCLNGEVDETLSASIVAQLLFLEADNPEKPIHLY 96

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+A+YDTM +I  P+ST C+GQAASMGSLLL  G  G R+ LP++ +++H
Sbjct: 97  INSPGGSVTAGLAVYDTMTYISAPVSTICVGQAASMGSLLLCGGHPGKRYCLPHSSVMVH 156

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK--TYEEVEKTLDRDHIM 190
           QPSGG+ GQA+DI  HA++I++++R+LNEIY  +  K  + +E+EK ++RD+ M
Sbjct: 157 QPSGGYFGQATDIAIHAKEILRVRRQLNEIYKLHLTKEMSLDEIEKWMERDYFM 210


>gi|126640549|ref|YP_001083533.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter
           baumannii ATCC 17978]
          Length = 155

 Score =  209 bits (531), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 96/154 (62%), Positives = 122/154 (79%)

Query: 55  MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASM 114
           MA LI AQ+LFLEAENP K+I LYINSPGG VTAGMAIYDTMQFIKP + T+CMGQAASM
Sbjct: 1   MANLIVAQMLFLEAENPDKDIHLYINSPGGSVTAGMAIYDTMQFIKPDVVTYCMGQAASM 60

Query: 115 GSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCG 174
           G+ LL+AG KG R+ L NAR+++HQP GGF GQASDIE HA++I+ IK RLN +  ++ G
Sbjct: 61  GAFLLNAGAKGKRYCLENARVMIHQPLGGFRGQASDIEIHAREILFIKERLNRLMAEHSG 120

Query: 175 KTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           + Y+ + +  DRD+ M+A  A ++G+VD+VL  R
Sbjct: 121 QDYDTIARDTDRDNFMTAQAAKEYGLVDQVLSKR 154


>gi|156741459|ref|YP_001431588.1| endopeptidase Clp [Roseiflexus castenholzii DSM 13941]
 gi|156232787|gb|ABU57570.1| Endopeptidase Clp [Roseiflexus castenholzii DSM 13941]
          Length = 219

 Score =  209 bits (531), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 96/199 (48%), Positives = 143/199 (71%), Gaps = 1/199 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+PMVVE TNRGER+YDIYSRLLKER++ +   IED +A LI AQLLFLE E+P ++I L
Sbjct: 20  LIPMVVESTNRGERAYDIYSRLLKERVILLGTPIEDQIANLIVAQLLFLEHEDPDRDIWL 79

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TAG+AIYDTMQ I+P ++T C+G A SM + +L+ G KG R++LP++ I +
Sbjct: 80  YINSPGGSITAGLAIYDTMQVIRPDVATVCVGMAGSMATPILAGGAKGKRYSLPHSTIHM 139

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           H   GG  G A D+E  A+++++ ++ + E+  K+ G+  E + +  DRD  M   +A +
Sbjct: 140 HPAGGGARGYAPDVEIMARELLREQQLIRELLAKDTGQPLERIARDFDRDLFMDPQQAKE 199

Query: 198 WGVVDKVLMSRIDIEEKSK 216
           +G++D++L +R D+   S+
Sbjct: 200 YGIIDEIL-TREDLPAASE 217


>gi|78212970|ref|YP_381749.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           CC9605]
 gi|78197429|gb|ABB35194.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. CC9605]
          Length = 218

 Score =  208 bits (530), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 97/191 (50%), Positives = 138/191 (72%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+E++ RGER++DIYSRLL+ERI+F+   +    A  I AQ+LFLEAE+P+K+I L
Sbjct: 22  MIPIVIEESGRGERAFDIYSRLLRERIIFLGEAVTSDSANRIVAQMLFLEAEDPEKDIYL 81

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I+DTMQ IKP + T C+G AASMG+ LL AG KG R +L ++RI++
Sbjct: 82  YINSPGGSVYDGLGIFDTMQHIKPDVHTVCVGLAASMGAFLLCAGTKGKRSSLQHSRIMI 141

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A +I+ +K RLN+      G+T + +++  DRD  MS +EA +
Sbjct: 142 HQPLGGAQGQASDIRIQADEILFLKERLNKELSDRTGQTLDRIQQDTDRDFFMSPTEAMN 201

Query: 198 WGVVDKVLMSR 208
           +G++D V+  R
Sbjct: 202 YGLIDSVIDKR 212


>gi|257463897|ref|ZP_05628283.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           D12]
 gi|317061426|ref|ZP_07925911.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           D12]
 gi|313687102|gb|EFS23937.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           D12]
          Length = 195

 Score =  208 bits (530), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 99/192 (51%), Positives = 142/192 (73%), Gaps = 3/192 (1%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P V++   R ER +DI+SRLL++RI+F+  ++ D +A  + AQLL+LEAE+P K+I LYI
Sbjct: 4   PTVIDNDGRQERHFDIFSRLLRDRIIFLGTEVNDQVAASLVAQLLYLEAEDPTKDIILYI 63

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V+AG+AIYDTM ++KP I T C+GQAASMG+ LL+AG KG RFAL N+RI++HQ
Sbjct: 64  NSPGGSVSAGLAIYDTMNYVKPDIQTVCIGQAASMGAFLLAAGTKGKRFALENSRIMIHQ 123

Query: 140 PSGGF-SG--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           P GG  SG  QA+D++  A+++   K +L  I  KN GK+ EEV +  +RD+ ++A EA 
Sbjct: 124 PLGGTGSGYHQATDVQIIAKELQATKEKLAGIIAKNTGKSKEEVLEDTERDNYLTAEEAV 183

Query: 197 DWGVVDKVLMSR 208
            +G++D V+ +R
Sbjct: 184 KYGLIDMVMKAR 195


>gi|88808603|ref|ZP_01124113.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           WH 7805]
 gi|88787591|gb|EAR18748.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           WH 7805]
          Length = 196

 Score =  208 bits (530), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 98/191 (51%), Positives = 137/191 (71%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+E++ RGER++DIYSRLL+ERI+F+   +    A  I AQLLFLEAE+P+K+I L
Sbjct: 1   MIPIVIEESGRGERAFDIYSRLLRERIIFLGEAVTSESANRIVAQLLFLEAEDPEKDIFL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I+DTMQ IKP + T C+G AASMG+ LL AG KG R +L ++RI++
Sbjct: 61  YINSPGGSVYDGLGIFDTMQHIKPDVQTVCVGLAASMGAFLLCAGAKGKRSSLRHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A +I+ +K RLN+   +   +  E++++  DRD  MS  EA D
Sbjct: 121 HQPLGGARGQASDIRIQADEILFLKNRLNQELAERTSQPLEKIQEDTDRDFFMSPHEAAD 180

Query: 198 WGVVDKVLMSR 208
           +G++D V+  R
Sbjct: 181 YGLIDSVIDKR 191


>gi|116511469|ref|YP_808685.1| ATP-dependent Clp protease proteolytic subunit [Lactococcus lactis
           subsp. cremoris SK11]
 gi|123320556|sp|Q030V9|CLPP_LACLS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|116107123|gb|ABJ72263.1| ATP-dependent Clp protease proteolytic subunit ClpP [Lactococcus
           lactis subsp. cremoris SK11]
          Length = 199

 Score =  208 bits (530), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 96/190 (50%), Positives = 137/190 (72%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ++RGER+YDIYSRLLK+RI+ +TG +ED MA  I AQLLFL+A++  K+I L
Sbjct: 4   LVPTVIEQSSRGERAYDIYSRLLKDRIIMLTGPVEDGMANSIIAQLLFLDAQDNTKDIYL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  L+
Sbjct: 64  YVNTPGGSVSAGLAIVDTMNFIKSDVLTIVMGMAASMGTIIASSGTKGKRFMLPNAEYLI 123

Query: 138 HQPSGGF--SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP GG     Q +D+   A+ ++K ++RL +I   N  ++ E++ K  +RDH M A E 
Sbjct: 124 HQPMGGAGQGTQQTDMAIVAEQLLKTRKRLEQILADNSNRSLEQIHKDAERDHWMDAKET 183

Query: 196 CDWGVVDKVL 205
            ++G +D+++
Sbjct: 184 LEYGFIDEIM 193


>gi|148239550|ref|YP_001224937.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           WH 7803]
 gi|147848089|emb|CAK23640.1| Protease subunit of ATP-dependent Clp protease [Synechococcus sp.
           WH 7803]
          Length = 196

 Score =  208 bits (530), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 98/191 (51%), Positives = 138/191 (72%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+E++ RGER++DIYSRLL+ERI+F+   +    A  I AQLLFLEAE+P+K+I L
Sbjct: 1   MIPIVIEESGRGERAFDIYSRLLRERIIFLGEAVTSESANRIVAQLLFLEAEDPEKDIFL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I+DTMQ IKP + T C+G AASMG+ LL AG KG R +L ++RI++
Sbjct: 61  YINSPGGSVYDGLGIFDTMQHIKPDVQTVCVGLAASMGAFLLCAGAKGKRSSLRHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A +I+ +K RLN+   +   +  E++++  DRD  MS +EA D
Sbjct: 121 HQPLGGARGQASDIRIQADEILFLKNRLNQELSERTSQPLEKIQEDTDRDFFMSPNEAVD 180

Query: 198 WGVVDKVLMSR 208
           +G++D V+  R
Sbjct: 181 YGLIDSVIDKR 191


>gi|116256436|sp|Q3AJN8|CLPP2_SYNSC RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
          Length = 197

 Score =  208 bits (530), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 97/191 (50%), Positives = 138/191 (72%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+E++ RGER++DIYSRLL+ERI+F+   +    A  I AQ+LFLEAE+P+K+I L
Sbjct: 1   MIPIVIEESGRGERAFDIYSRLLRERIIFLGEAVTSDSANRIVAQMLFLEAEDPEKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I+DTMQ IKP + T C+G AASMG+ LL AG KG R +L ++RI++
Sbjct: 61  YINSPGGSVYDGLGIFDTMQHIKPDVHTVCVGLAASMGAFLLCAGTKGKRSSLQHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A +I+ +K RLN+      G+T + +++  DRD  MS +EA +
Sbjct: 121 HQPLGGAQGQASDIRIQADEILFLKERLNKELSDRTGQTLDRIQQDTDRDFFMSPTEAMN 180

Query: 198 WGVVDKVLMSR 208
           +G++D V+  R
Sbjct: 181 YGLIDSVIDKR 191


>gi|254432163|ref|ZP_05045866.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanobium sp.
           PCC 7001]
 gi|197626616|gb|EDY39175.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanobium sp.
           PCC 7001]
          Length = 196

 Score =  208 bits (530), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 99/191 (51%), Positives = 137/191 (71%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+E++ RGER++DIYSRLL+ERIVF+   +    A  I AQLLFLEAE+P+K+I L
Sbjct: 1   MIPIVIEESGRGERAFDIYSRLLRERIVFLGEPVTAESANRIVAQLLFLEAEDPEKDIFL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I+DTMQ IKP + T C+G AASMG+ LL AG KG R +L ++RI++
Sbjct: 61  YINSPGGSVYDGLGIFDTMQHIKPDVQTVCVGLAASMGAFLLCAGTKGKRSSLTHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A +I+ +K++LN+      G+    +E+  DRD  MS +EA  
Sbjct: 121 HQPLGGARGQASDIRIQADEILYLKQKLNQELADRTGQPMTRIEEDTDRDFFMSPAEAMA 180

Query: 198 WGVVDKVLMSR 208
           +G++DKV+  R
Sbjct: 181 YGLIDKVIEKR 191


>gi|116070498|ref|ZP_01467767.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           BL107]
 gi|116065903|gb|EAU71660.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           BL107]
          Length = 197

 Score =  208 bits (529), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 98/191 (51%), Positives = 136/191 (71%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+E++ RGER++DIYSRLL+ERI+F+   +    A  I AQ+LFLEAE+P+K+I L
Sbjct: 1   MIPIVIEESGRGERAFDIYSRLLRERIIFLGEAVTSDSANRIVAQMLFLEAEDPEKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I+DTMQ IKP + T C+G AASMG+ LL AG KG R +L ++RI++
Sbjct: 61  YINSPGGSVYDGLGIFDTMQHIKPDVQTVCVGLAASMGAFLLCAGTKGKRSSLQHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG SGQASDI   A +I+ +K RLN       G+  + +++  DRD  MS SEA  
Sbjct: 121 HQPLGGASGQASDIRIQADEILYLKDRLNTELSDRTGQPLDRIQEDTDRDFFMSPSEAVS 180

Query: 198 WGVVDKVLMSR 208
           +G++D V+  R
Sbjct: 181 YGLIDSVIDKR 191


>gi|300869048|ref|ZP_07113650.1| ATP-dependent Clp protease proteolytic subunit [Oscillatoria sp.
           PCC 6506]
 gi|300332959|emb|CBN58844.1| ATP-dependent Clp protease proteolytic subunit [Oscillatoria sp.
           PCC 6506]
          Length = 197

 Score =  208 bits (529), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 94/180 (52%), Positives = 140/180 (77%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ER  DIY+RL +ERI+F+  ++ D +A  I A LL+L++++  K I +YINSPGG VTAG
Sbjct: 18  ERWIDIYTRLSQERIIFLGQEVTDGLANRIVAYLLYLDSDDSTKPIFIYINSPGGSVTAG 77

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
           MAI+DTMQ+IK  + T C+GQAASMG+ LL+AG KG R ALP+ARI++HQP GG  GQA+
Sbjct: 78  MAIFDTMQYIKSEVVTMCVGQAASMGAFLLAAGTKGKRLALPHARIMIHQPLGGTRGQAT 137

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           DI+  A++I++++++LNE+  K  G+T E+++K  DRD+ MSA+EA ++G++D+V+  R+
Sbjct: 138 DIQIEAKEILRVRQQLNEMLAKRTGQTLEKIQKDTDRDYFMSAAEAKEYGLIDQVIEERV 197


>gi|65320084|ref|ZP_00393043.1| COG0740: Protease subunit of ATP-dependent Clp proteases [Bacillus
           anthracis str. A2012]
          Length = 186

 Score =  208 bits (529), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 100/181 (55%), Positives = 130/181 (71%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVEQT  GERSYDIYSRLLK+RIV +  +I D +A+ + AQLLFLEAE+ +K+I LY
Sbjct: 4   IPYVVEQTKLGERSYDIYSRLLKDRIVIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLY 63

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I++H
Sbjct: 64  INSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIH 123

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+A  A  +
Sbjct: 124 QPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMTAERAKAY 183

Query: 199 G 199
           G
Sbjct: 184 G 184


>gi|303232754|ref|ZP_07319439.1| Clp protease [Atopobium vaginae PB189-T1-4]
 gi|302481240|gb|EFL44315.1| Clp protease [Atopobium vaginae PB189-T1-4]
          Length = 204

 Score =  208 bits (529), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 98/196 (50%), Positives = 139/196 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P V+EQT RGERSYDIYSRLL +RIVF+  ++    A L+ AQLL LE+++P K+ISL
Sbjct: 9   LIPYVIEQTPRGERSYDIYSRLLNDRIVFLGEEVTRDSANLVIAQLLHLESQDPDKDISL 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YI+SPGG V AG+ I DTM FIKP +ST C+G A SM S+LL+AG KG R  LPN+ +++
Sbjct: 69  YIDSPGGEVYAGLGILDTMNFIKPDVSTICVGMACSMASVLLAAGAKGKRMCLPNSMVMI 128

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPS G  GQ +DI+  A +   I+  LNE+     G+T E + +  +RD+ + A +A +
Sbjct: 129 HQPSSGAQGQQTDIQIVADETKWIREHLNELLASYTGQTKERINEDTERDNYLRAQDALE 188

Query: 198 WGVVDKVLMSRIDIEE 213
           +G+VDKV+ +R  +++
Sbjct: 189 YGLVDKVITTRAALQK 204


>gi|167757344|ref|ZP_02429471.1| hypothetical protein CLORAM_02894 [Clostridium ramosum DSM 1402]
 gi|237735579|ref|ZP_04566060.1| ATP-dependent Clp protease proteolytic subunit [Mollicutes
           bacterium D7]
 gi|167703519|gb|EDS18098.1| hypothetical protein CLORAM_02894 [Clostridium ramosum DSM 1402]
 gi|229381324|gb|EEO31415.1| ATP-dependent Clp protease proteolytic subunit [Coprobacillus sp.
           D7]
          Length = 190

 Score =  208 bits (529), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 98/190 (51%), Positives = 137/190 (72%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+E+TN+ E +YDIYSRLL++RI+ +TG I+D M++ I  QLL+LE+ +   +I
Sbjct: 1   MHLVPTVIEKTNQREYAYDIYSRLLEDRIILLTGTIDDKMSSSIVGQLLYLESLDNNADI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG + AGMAIYDTM FIK  +ST  +G AASM + LLSAG KG R +LPN+ I
Sbjct: 61  FMYINSPGGSINAGMAIYDTMNFIKCDVSTIVIGMAASMAAFLLSAGAKGKRCSLPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP G F GQASDIE  A+ I+K K +LN I  KN  +  +++    DRDH +   EA
Sbjct: 121 MIHQPLGAFEGQASDIEISAKRILKQKEKLNLILSKNTNQPIDKIVIDTDRDHFLEPDEA 180

Query: 196 CDWGVVDKVL 205
            ++G++D+V+
Sbjct: 181 LEYGLIDEVI 190


>gi|257063882|ref|YP_003143554.1| protease subunit of ATP-dependent protease [Slackia
           heliotrinireducens DSM 20476]
 gi|256791535|gb|ACV22205.1| protease subunit of ATP-dependent protease [Slackia
           heliotrinireducens DSM 20476]
          Length = 206

 Score =  208 bits (529), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 98/192 (51%), Positives = 138/192 (71%), Gaps = 2/192 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+EQ+ RGER+YDIYSRLL +RI+F+   I+D++A L+ AQLL LE+ +P+K+ISLY
Sbjct: 9   IPYVIEQSPRGERTYDIYSRLLNDRIIFLGDAIDDNVANLVVAQLLHLESSDPEKDISLY 68

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG V+AGMAIYD MQFI+  +ST C+G AASM S+L +AG  G RF  PN++I++H
Sbjct: 69  INSPGGSVSAGMAIYDAMQFIRCDVSTVCIGMAASMASVLTAAGTPGKRFITPNSQIMIH 128

Query: 139 QPSGGFSG--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           QP GG     Q +D E  A ++ K + RL  I   + G+T E +    +RDH ++A EA 
Sbjct: 129 QPMGGAESRTQQTDFEIAATEMRKTRERLEGILAAHTGQTIETIHADSERDHWLTAEEAK 188

Query: 197 DWGVVDKVLMSR 208
            +G+VD+++ SR
Sbjct: 189 AYGLVDEIITSR 200


>gi|119953393|ref|YP_945602.1| ATP-dependent Clp protease proteolytic subunit [Borrelia turicatae
           91E135]
 gi|119862164|gb|AAX17932.1| ATP-dependent Clp protease proteolytic subunit [Borrelia turicatae
           91E135]
          Length = 199

 Score =  208 bits (529), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 95/189 (50%), Positives = 138/189 (73%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP VVE T   ER +DIYSRLL++RI+F++G+I D  A  + AQLLFLE+E+ +K+I +
Sbjct: 9   LVPTVVEHTGNYERVFDIYSRLLRDRIIFLSGEINDVRADTVIAQLLFLESEDSKKDIYV 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TAG+AIYDTMQ+IKP + T C+GQAASM + LL+ G  G R +L  +RI++
Sbjct: 69  YINSPGGSITAGLAIYDTMQYIKPDVRTICIGQAASMAAFLLAGGAIGKRESLSYSRIMI 128

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A +I+++KR + +I     G + E++   ++RD+ M+  +A D
Sbjct: 129 HQPWGGIGGQASDISIQANEIIRLKRLIIDIMSDKIGVSKEKLSLDIERDYFMTPKDALD 188

Query: 198 WGVVDKVLM 206
           +G++D +L+
Sbjct: 189 YGIIDGILV 197


>gi|116617520|ref|YP_817891.1| ATP-dependent Clp protease proteolytic subunit ClpP [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|227432636|ref|ZP_03914612.1| ATP-dependent Clp protease proteolytic subunit ClpP [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
 gi|116096367|gb|ABJ61518.1| ATP-dependent Clp protease proteolytic subunit ClpP [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|227351606|gb|EEJ41856.1| ATP-dependent Clp protease proteolytic subunit ClpP [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
          Length = 200

 Score =  207 bits (528), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 99/190 (52%), Positives = 136/190 (71%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           + P V+EQT  G  +YD+ SRLLK+RI+ V G+IED MAT I AQLLFLEA++P KEIS+
Sbjct: 1   MWPGVIEQTANGRENYDLPSRLLKDRIILVQGEIEDSMATSIVAQLLFLEAQDPTKEISM 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG++I DTM FIK P++T  MG AASMG+++ ++GEKG RF LPNA  L+
Sbjct: 61  YINSPGGSVTAGLSITDTMNFIKAPVTTIVMGLAASMGTIIAASGEKGHRFMLPNAEYLI 120

Query: 138 HQPSGGFSG--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP GG +G  Q +D+   A+ + K + +LN+I     GK  + + +  +RD+ MSA E 
Sbjct: 121 HQPMGGAAGGTQQTDMAIIAEQLTKTRAKLNKILADASGKDLKVIGRDTERDNWMSAEET 180

Query: 196 CDWGVVDKVL 205
            ++G +D +L
Sbjct: 181 LEYGFIDGIL 190


>gi|258564300|ref|XP_002582895.1| clp protease [Uncinocarpus reesii 1704]
 gi|237908402|gb|EEP82803.1| clp protease [Uncinocarpus reesii 1704]
          Length = 222

 Score =  207 bits (528), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 95/175 (54%), Positives = 138/175 (78%), Gaps = 2/175 (1%)

Query: 42  ERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP 101
           ERI+ + G++++ ++  I AQLLFLEA+NP+K+ISLYINSPGG VTAG+AIYDTM +I+ 
Sbjct: 45  ERIICLNGEVDESVSASIVAQLLFLEADNPEKQISLYINSPGGSVTAGLAIYDTMTYIQS 104

Query: 102 PISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKI 161
           P+ST C+GQAASMGSLLL  GE G RF LP++ I++HQPSGG+ GQA+DI  HA++I+++
Sbjct: 105 PVSTICIGQAASMGSLLLCGGEPGKRFCLPHSSIMIHQPSGGYFGQATDIAIHAKEILRV 164

Query: 162 KRRLNEIYVKNCGK--TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           +++LNEIY ++  K  + +E+EK ++RD+ M ASEA   G+VD ++  R   +E+
Sbjct: 165 RKQLNEIYKRHLTKEISLDEIEKLMERDYFMGASEALGMGIVDGIMDRRTKSKEE 219


>gi|332140445|ref|YP_004426183.1| Protease subunit of ATP-dependent Clp protease [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327550467|gb|AEA97185.1| Protease subunit of ATP-dependent Clp protease [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 153

 Score =  207 bits (528), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 93/149 (62%), Positives = 122/149 (81%)

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           +LFLEAENP+K+I LYINSPGG VTAGMAIYDTM+FIKP +ST CMGQAASMG+ LLSAG
Sbjct: 1   MLFLEAENPEKDIFLYINSPGGSVTAGMAIYDTMRFIKPDVSTVCMGQAASMGAFLLSAG 60

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
            KG R+ LPN+R+++HQP GGF GQASD E HA++I+ IK +LN +   + G+ YE+V +
Sbjct: 61  AKGKRYCLPNSRVMIHQPLGGFQGQASDFEIHAKEILSIKEKLNRLLADHTGQDYEKVAR 120

Query: 183 TLDRDHIMSASEACDWGVVDKVLMSRIDI 211
             DRD+ +SA+EA ++G+VD+VL +R D+
Sbjct: 121 DTDRDNFLSATEAKEYGLVDQVLANRSDV 149


>gi|284054834|ref|ZP_06385044.1| ATP-dependent Clp protease proteolytic subunit ClpP [Arthrospira
           platensis str. Paraca]
          Length = 212

 Score =  207 bits (528), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 95/179 (53%), Positives = 133/179 (74%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G++PMVVEQ+  GER++D+YSRLL++RI+F+   I+D +A  + AQ+LFLE+E+P+K+I 
Sbjct: 34  GVIPMVVEQSGMGERAFDLYSRLLRDRIIFLGTPIDDEVANAVSAQMLFLESEDPEKDIQ 93

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM IYDTMQ I+P + T C G AASMG+ LL++G  G R +LP++RI+
Sbjct: 94  LYINSPGGSVTAGMGIYDTMQQIRPDVVTICYGLAASMGAFLLASGTAGKRMSLPSSRIM 153

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP GG  GQA DIE  A++I+  K  LN +  ++ G+  E +    +RD  MSA+EA
Sbjct: 154 IHQPLGGAQGQAIDIEIQAKEILYHKHTLNTLLAQHTGQPIERINADTERDFFMSAAEA 212


>gi|296111257|ref|YP_003621639.1| ATP-dependent Clp protease proteolytic subunit [Leuconostoc kimchii
           IMSNU 11154]
 gi|295832789|gb|ADG40670.1| ATP-dependent Clp protease proteolytic subunit [Leuconostoc kimchii
           IMSNU 11154]
          Length = 201

 Score =  207 bits (528), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 100/188 (53%), Positives = 132/188 (70%), Gaps = 2/188 (1%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P V+EQT  G  SYD+ SRLLK+RI+ V G++ED MAT I AQLLFLEA++P KEIS+YI
Sbjct: 3   PGVIEQTANGRESYDLPSRLLKDRIILVQGEVEDSMATSIVAQLLFLEAQDPTKEISMYI 62

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VTAG++I DTM FIK P++T  MG AASMG+++ S+GEKG RF LPNA  L+HQ
Sbjct: 63  NSPGGSVTAGLSITDTMNFIKAPVTTIVMGLAASMGTIIASSGEKGHRFMLPNAEYLIHQ 122

Query: 140 PSGGFSG--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           P GG  G  Q +D+   A+ + K + +LN+I      K  E +    +RD+ MSA E  +
Sbjct: 123 PMGGAVGGTQQTDMAIIAEQLTKTRAKLNKILADASDKDLETIAHDTERDNWMSAEETLE 182

Query: 198 WGVVDKVL 205
           +G +D +L
Sbjct: 183 YGFIDGIL 190


>gi|78779134|ref|YP_397246.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus str. MIT 9312]
 gi|115311341|sp|Q31BD5|CLPP1_PROM9 RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|78712633|gb|ABB49810.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Prochlorococcus marinus str. MIT 9312]
          Length = 195

 Score =  207 bits (528), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 99/188 (52%), Positives = 135/188 (71%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+E++   ER +DIYSRLL+ERI+F+  Q+    A  I AQLLFLEAE+P K+I +
Sbjct: 1   MIPLVLEESGGSERVFDIYSRLLRERIIFLGEQVTSETANRIVAQLLFLEAEDPDKDIYM 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I+DTMQ +KP I T C+G AASMG+ LL+AG KG R +L ++RI++
Sbjct: 61  YINSPGGSVYDGLGIFDTMQHVKPDIHTVCVGLAASMGAFLLAAGTKGKRSSLRHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A +I+ +K RLN    +  GK YE +++  DRD  MS SEA +
Sbjct: 121 HQPLGGARGQASDIRIQADEILFLKERLNTELSERTGKDYETIKEDTDRDFYMSPSEAVE 180

Query: 198 WGVVDKVL 205
           +G++D VL
Sbjct: 181 YGLIDLVL 188


>gi|116334974|ref|YP_802469.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Carsonella ruddii PV]
 gi|122940475|sp|Q05FR8|CLPP_CARRP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|116235255|dbj|BAF35103.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Carsonella ruddii PV]
          Length = 194

 Score =  207 bits (528), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 92/191 (48%), Positives = 143/191 (74%), Gaps = 1/191 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            +P V+++  +G+R  D+YS++LKER++++ G IED MA+LI +QL+FL++EN  K+I L
Sbjct: 3   FLPTVIDKNIKGDRFLDLYSKMLKERVIYLNGAIEDTMASLIVSQLMFLDSENS-KDIIL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVV++G++IYDT+QF+K  +ST C+GQAASM ++LL+AG+KG RF  PN+RI++
Sbjct: 62  YINSPGGVVSSGLSIYDTIQFLKSDVSTICIGQAASMAAVLLAAGKKGKRFCFPNSRIMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP G   GQASD+E HA++++ IK+ L EI   +   +  ++ K  DRD+ M+  +   
Sbjct: 122 HQPLGYAQGQASDVEIHAREMINIKQILCEILSSHTNNSIFQIFKDTDRDNFMNCKQTLK 181

Query: 198 WGVVDKVLMSR 208
           +G++D VL  +
Sbjct: 182 YGIIDNVLYKK 192


>gi|148657762|ref|YP_001277967.1| endopeptidase Clp [Roseiflexus sp. RS-1]
 gi|148569872|gb|ABQ92017.1| Endopeptidase Clp [Roseiflexus sp. RS-1]
          Length = 219

 Score =  207 bits (526), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 92/188 (48%), Positives = 137/188 (72%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+PMVVE TNRGER+YDIYSRLLKER++ +   I+D +A LI AQLLFLE E+P ++I L
Sbjct: 20  LIPMVVESTNRGERAYDIYSRLLKERVILLGTPIDDQIANLIVAQLLFLEHEDPDRDIWL 79

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TAG+AIYDTMQ I+P ++T C+G A SM + +L+ G KG R++LP++ I +
Sbjct: 80  YINSPGGSITAGLAIYDTMQVIRPDVATVCVGMAGSMATPILAGGAKGKRYSLPHSTIHM 139

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           H   GG  G A D+E  A+++++ ++ + E+  K+ G+  E + +  DRD  M   +A +
Sbjct: 140 HPAGGGARGYAPDVEIMARELLREQQLIRELLAKDTGQPLERIARDFDRDLFMDPQQAKE 199

Query: 198 WGVVDKVL 205
           +G++D++L
Sbjct: 200 YGIIDEIL 207


>gi|33240370|ref|NP_875312.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
 gi|67460522|sp|Q7VC22|CLPP1_PROMA RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|33237897|gb|AAP99964.1| Protease subunit of ATP-dependent Clp protease [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
          Length = 196

 Score =  207 bits (526), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 99/188 (52%), Positives = 135/188 (71%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+VVE+T RGER++DIYSRLL+ERIVF+  Q+ +  A  I AQLLFLEAE+P+K+I L
Sbjct: 1   MIPIVVEETGRGERAFDIYSRLLRERIVFLGEQVTNDSANRIVAQLLFLEAEDPEKDIFL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G  I+DT+Q IKP + T C+G AASMG+ LL AG KG R +L ++RI++
Sbjct: 61  YINSPGGSVYDGFGIFDTIQHIKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DI   A +I+ +K++LN       G+   ++ +  DRD  MS SEA  
Sbjct: 121 HQPLGGARGQATDIRIQADEILFLKQKLNTELSNRTGQPLSKIAEDTDRDFYMSPSEAIS 180

Query: 198 WGVVDKVL 205
           +G++D VL
Sbjct: 181 YGIIDNVL 188


>gi|282900572|ref|ZP_06308514.1| Peptidase S14, ClpP [Cylindrospermopsis raciborskii CS-505]
 gi|281194372|gb|EFA69327.1| Peptidase S14, ClpP [Cylindrospermopsis raciborskii CS-505]
          Length = 194

 Score =  206 bits (525), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 98/187 (52%), Positives = 140/187 (74%), Gaps = 1/187 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP  +  +N  E+  D+  RL +ERI+F+T +++D +A  I A LL+L++++  K I LY
Sbjct: 8   VPYRLPGSNY-EQWIDLEDRLFRERIIFLTEEVDDGIANAIVAYLLYLDSDDQTKPIYLY 66

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAGMAIYDT+Q+IK  + T C+G AASMGS LL+AG KG R ALP++RI++H
Sbjct: 67  INSPGGSVTAGMAIYDTIQYIKSEVVTICVGLAASMGSFLLAAGAKGKRLALPHSRIMIH 126

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  GQASDIE  A++I++I+ +LN+IY  N G+   ++EK +DRD  MSA EA ++
Sbjct: 127 QPSGGTRGQASDIEIEAREILRIRHQLNQIYADNTGQVLSKIEKDMDRDFFMSAQEAKEY 186

Query: 199 GVVDKVL 205
           G++D+V+
Sbjct: 187 GLIDRVI 193


>gi|189485256|ref|YP_001956197.1| ATP-dependent Clp protease protease subunit P [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
 gi|170287215|dbj|BAG13736.1| ATP-dependent Clp protease protease subunit P [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
          Length = 203

 Score =  206 bits (525), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 101/197 (51%), Positives = 148/197 (75%), Gaps = 7/197 (3%)

Query: 18  LVPMVVEQTNRGER-SYDIYSRLLKERIVFVTGQ---IEDHMATLICAQLLFLEAENPQK 73
           L+P V+E+ N+G   +YD+YSRLLK+RI+FV GQ   +    A ++ AQLL+L++E+  K
Sbjct: 4   LIPTVIERWNQGAAVTYDLYSRLLKDRIIFVGGQDGAVTTDSANVLIAQLLYLDSEDQGK 63

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +ISLYINSPGG+V+AG+A+YDTMQFIK PI+T CMG A S G++LL+AG KG R+AL ++
Sbjct: 64  DISLYINSPGGMVSAGLAVYDTMQFIKSPITTICMGMAMSFGAVLLAAGTKGKRYALTHS 123

Query: 134 RILLHQP---SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           RI++HQP    GG SG  SDI+  A+++V  K++L+ I  ++ GKT E V K  DR+  M
Sbjct: 124 RIMIHQPLIYGGGLSGTVSDIDIEAKELVSTKQKLSGIIAEHTGKTSERVLKDTDRNCYM 183

Query: 191 SASEACDWGVVDKVLMS 207
           SA EA ++G++D+V+++
Sbjct: 184 SAQEAKEYGLIDEVIVN 200


>gi|255642366|gb|ACU21447.1| unknown [Glycine max]
          Length = 175

 Score =  206 bits (525), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 92/143 (64%), Positives = 119/143 (83%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+PMV+E ++RGER+YDI+SRLLKERI+ + G I D  A ++ AQ LFLE+ENP K I++
Sbjct: 27  LIPMVIEHSSRGERAYDIFSRLLKERIICINGPISDDTAHVVVAQPLFLESENPSKPINM 86

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG ++AG+AIYDTMQ+I+ P+ST CMGQAASMGSLLL+AG KG R +LPNA I++
Sbjct: 87  YLNSPGGAISAGLAIYDTMQYIRSPVSTICMGQAASMGSLLLAAGAKGERRSLPNATIMI 146

Query: 138 HQPSGGFSGQASDIERHAQDIVK 160
           HQPSGG+SGQA DI  H + IV+
Sbjct: 147 HQPSGGYSGQAKDIAIHTKHIVR 169


>gi|282896316|ref|ZP_06304338.1| Peptidase S14, ClpP [Raphidiopsis brookii D9]
 gi|281198812|gb|EFA73691.1| Peptidase S14, ClpP [Raphidiopsis brookii D9]
          Length = 194

 Score =  206 bits (525), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 98/187 (52%), Positives = 140/187 (74%), Gaps = 1/187 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP  +  +N  E+  D+  RL +ERI+F+T +++D +A  I A LL+L++++  K I LY
Sbjct: 8   VPYRLPGSNY-EQWIDLEDRLFRERIIFLTEEVDDGIANAIVAYLLYLDSDDQTKPIYLY 66

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAGMAIYDT+Q+IK  + T C+G AASMGS LL+AG KG R ALP++RI++H
Sbjct: 67  INSPGGSVTAGMAIYDTIQYIKSEVITICVGLAASMGSFLLAAGAKGKRLALPHSRIMIH 126

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  GQASDIE  A++I++I+ +LN+IY  N G+   ++EK +DRD  MSA EA ++
Sbjct: 127 QPSGGTRGQASDIEIEAREILRIRHQLNQIYADNTGQVLSKIEKDMDRDFFMSAQEAKEY 186

Query: 199 GVVDKVL 205
           G++D+V+
Sbjct: 187 GLIDRVI 193


>gi|260435297|ref|ZP_05789267.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. WH 8109]
 gi|260413171|gb|EEX06467.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. WH 8109]
          Length = 205

 Score =  206 bits (525), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 96/191 (50%), Positives = 137/191 (71%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+E++ RGER++DIYSRLL+ERI+F+   +    A  I AQ+LFLEAE+P+K+I L
Sbjct: 9   MIPIVIEESGRGERAFDIYSRLLRERIIFLGEAVTSDSANRIVAQMLFLEAEDPEKDIYL 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I+DTMQ IKP + T C+G AASMG+ LL AG KG R +L ++RI++
Sbjct: 69  YINSPGGSVYDGLGIFDTMQHIKPDVHTVCVGLAASMGAFLLCAGTKGKRSSLQHSRIMI 128

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A +I+ +K RLN+      G+  + +++  DRD  MS +EA +
Sbjct: 129 HQPLGGAQGQASDIRIQADEILFLKERLNKELSDRTGQPLDRIQQDTDRDFFMSPTEAVN 188

Query: 198 WGVVDKVLMSR 208
           +G++D V+  R
Sbjct: 189 YGLIDSVIDKR 199


>gi|146321407|ref|YP_001201118.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus suis
           98HAH33]
 gi|223933328|ref|ZP_03625316.1| Endopeptidase Clp [Streptococcus suis 89/1591]
 gi|253752247|ref|YP_003025388.1| putative ATP-dependent Clp protease proteolytic subunit
           [Streptococcus suis SC84]
 gi|253754073|ref|YP_003027214.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus suis
           P1/7]
 gi|253756007|ref|YP_003029147.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus suis
           BM407]
 gi|330833177|ref|YP_004402002.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus suis
           ST3]
 gi|166214715|sp|A4W2X9|CLPP_STRS2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|145692213|gb|ABP92718.1| putative ATP-dependent protease proteolytic subunit [Streptococcus
           suis 98HAH33]
 gi|223897978|gb|EEF64351.1| Endopeptidase Clp [Streptococcus suis 89/1591]
 gi|251816536|emb|CAZ52172.1| putative ATP-dependent Clp protease proteolytic subunit
           [Streptococcus suis SC84]
 gi|251818471|emb|CAZ56300.1| putative ATP-dependent Clp protease proteolytic subunit
           [Streptococcus suis BM407]
 gi|251820319|emb|CAR46838.1| putative ATP-dependent Clp protease proteolytic subunit
           [Streptococcus suis P1/7]
 gi|292558838|gb|ADE31839.1| ATP-dependent Clp protease, proteolytic subunit [Streptococcus suis
           GZ1]
 gi|319758636|gb|ADV70578.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus suis
           JS14]
 gi|329307400|gb|AEB81816.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus suis
           ST3]
          Length = 196

 Score =  206 bits (525), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 96/190 (50%), Positives = 139/190 (73%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  I AQLLFL+A++P K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDPTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGTAASMGTIIASSGAKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K + +L +I   N GKT +++ K  +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRNKLEKILADNSGKTVKQIHKDAERDYWMSAEET 180

Query: 196 CDWGVVDKVL 205
             +G +D+++
Sbjct: 181 LAYGFIDQIM 190


>gi|52082177|ref|YP_080968.1| ATP-dependent protease proteolytic subunit [Bacillus licheniformis
           ATCC 14580]
 gi|52787568|ref|YP_093397.1| hypothetical protein BLi03890 [Bacillus licheniformis ATCC 14580]
 gi|319648053|ref|ZP_08002270.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus sp.
           BT1B_CT2]
 gi|67460467|sp|Q65E10|CLPP2_BACLD RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|52005388|gb|AAU25330.1| ATP-dependentprotease proteolytic subunit (class III heat-shock
           protein) [Bacillus licheniformis ATCC 14580]
 gi|52350070|gb|AAU42704.1| hypothetical protein BLi03890 [Bacillus licheniformis ATCC 14580]
 gi|317389688|gb|EFV70498.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus sp.
           BT1B_CT2]
          Length = 190

 Score =  206 bits (525), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 91/190 (47%), Positives = 137/190 (72%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P V+E+T  GERSYDI+SRLLK+RI+ +  +  D +A  + AQLLFL AE+ +K+I
Sbjct: 1   MNTIPYVIEKTAAGERSYDIFSRLLKDRIIMIGSEFNDDLANRVTAQLLFLSAEDNEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGG  +AG AI DTM ++KP + T C+G AASMG++LL+ G KG R+AL N+ I
Sbjct: 61  SIYINSPGGSTSAGYAILDTMDYVKPDVRTICVGMAASMGAILLAGGAKGKRYALKNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+D+E  A+ I+K++ ++   + +  G+  E+++  ++RD+ M A EA
Sbjct: 121 MIHQPLGGVKGQATDMEISAKRIIKLREKIERFFHERTGQPIEKLKADMERDYFMDADEA 180

Query: 196 CDWGVVDKVL 205
             +GV+D VL
Sbjct: 181 KAYGVIDAVL 190


>gi|78184632|ref|YP_377067.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           CC9902]
 gi|124013818|sp|Q3AY04|CLPP1_SYNS9 RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|78168926|gb|ABB26023.1| ATP-dependent Clp protease proteolytic subunit ClpP [Synechococcus
           sp. CC9902]
          Length = 197

 Score =  206 bits (525), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 97/191 (50%), Positives = 135/191 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+E++ RGER++DIYSRLL+ERI+F+   +    A  I AQ+LFLEAE+P+K+I L
Sbjct: 1   MIPIVIEESGRGERAFDIYSRLLRERIIFLGEAVTSDSANRIVAQMLFLEAEDPEKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I+DTMQ IKP + T C+G AASMG+ LL AG KG R +L ++RI++
Sbjct: 61  YINSPGGSVYDGLGIFDTMQHIKPDVQTVCVGLAASMGAFLLCAGTKGKRSSLQHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG SGQASDI   A +I+ +K RLN       G+  + +++  DRD  MS  EA  
Sbjct: 121 HQPLGGASGQASDIRIQADEILYLKDRLNTELSDRTGQPLDRIQEDTDRDFFMSPGEAVS 180

Query: 198 WGVVDKVLMSR 208
           +G++D V+  R
Sbjct: 181 YGLIDSVIDKR 191


>gi|187918471|ref|YP_001884034.1| ATP-dependent Clp protease proteolytic subunit [Borrelia hermsii
           DAH]
 gi|119861319|gb|AAX17114.1| ATP-dependent Clp protease proteolytic subunit [Borrelia hermsii
           DAH]
          Length = 199

 Score =  206 bits (524), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 94/189 (49%), Positives = 138/189 (73%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP VVE T   ER +DIYSRLL++RI+F++G+I D  A  + AQLLFLE+E+ +K+I +
Sbjct: 9   LVPTVVEYTGNYERVFDIYSRLLRDRIIFLSGEINDIRADTVIAQLLFLESEDSKKDIYV 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +T+G+AIYDTMQ+IKP + T C+GQAASM + LL+ G  G R +L  +RI++
Sbjct: 69  YINSPGGSITSGLAIYDTMQYIKPDVRTICIGQAASMAAFLLAGGAIGKRESLSYSRIMI 128

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A +I+++KR + +I     G + E++   ++RD+ M+  +A D
Sbjct: 129 HQPWGGIGGQASDISIQANEIIRLKRLIIDIMSNKIGVSKEKLSLDIERDYFMTPKDALD 188

Query: 198 WGVVDKVLM 206
           +G++D +L+
Sbjct: 189 YGIIDGILV 197


>gi|33865835|ref|NP_897394.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           WH 8102]
 gi|67460510|sp|Q7U6N7|CLPP2_SYNPX RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|33633005|emb|CAE07816.1| ATP-dependent Clp protease proteolytic subunit 1 [Synechococcus sp.
           WH 8102]
          Length = 197

 Score =  206 bits (524), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 96/191 (50%), Positives = 136/191 (71%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+E++ RGER++DIYSRLL+ERI+F+   +    A  I AQ+LFLEAE+P+K+I L
Sbjct: 1   MIPIVIEESGRGERAFDIYSRLLRERIIFLGEAVTSDSANRIVAQMLFLEAEDPEKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I+DTMQ IKP + T C+G AASMG+ LL AG KG R +L ++RI++
Sbjct: 61  YINSPGGSVYDGLGIFDTMQHIKPDVHTVCVGLAASMGAFLLCAGTKGKRSSLQHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A +I+ +K RLN+      G+  + +++  DRD  MS  EA +
Sbjct: 121 HQPLGGARGQASDIRIQADEILYLKERLNQELSDRTGQPLDRIQQDTDRDFFMSPGEAVE 180

Query: 198 WGVVDKVLMSR 208
           +G++D V+  R
Sbjct: 181 YGLIDSVIDKR 191


>gi|327292805|ref|XP_003231100.1| ATP-dependent Clp protease [Trichophyton rubrum CBS 118892]
 gi|326466730|gb|EGD92183.1| ATP-dependent Clp protease [Trichophyton rubrum CBS 118892]
          Length = 223

 Score =  206 bits (524), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 96/177 (54%), Positives = 138/177 (77%), Gaps = 3/177 (1%)

Query: 42  ERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP 101
           ERIV + G++++ ++  I AQLLFLEA+NP+K I LYINSPGG VTAG+AIYDTM +I+ 
Sbjct: 44  ERIVCLNGEVDETLSAAIVAQLLFLEADNPEKPIQLYINSPGGSVTAGLAIYDTMTYIQS 103

Query: 102 PISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKI 161
           P+ST C+GQAASMGSLLL  GE G R+ LP++ +++HQPSGG+ GQA+DI  HA++I+++
Sbjct: 104 PVSTICVGQAASMGSLLLCGGEAGKRYCLPHSSVMIHQPSGGYFGQATDIAIHAKEILRV 163

Query: 162 KRRLNEIYVKN-CGK--TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
           + +LN+IY ++  GK  T EE+EK ++RD+ M A EA + G+VD +L  R+  +E+S
Sbjct: 164 RHQLNQIYKRHLTGKEMTLEEIEKLMERDYFMGAKEALEMGIVDSILDRRMPSKEES 220


>gi|269215646|ref|ZP_06159500.1| Clp protease [Slackia exigua ATCC 700122]
 gi|269131133|gb|EEZ62208.1| Clp protease [Slackia exigua ATCC 700122]
          Length = 255

 Score =  206 bits (524), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 99/193 (51%), Positives = 139/193 (72%), Gaps = 4/193 (2%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+EQ+ RGERSYDIYSRLL +RIVF+   I+D +A ++ AQLL LE+ +P+K+ISLY
Sbjct: 57  IPYVIEQSPRGERSYDIYSRLLNDRIVFLGDAIDDGVANIVVAQLLHLESSDPEKDISLY 116

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG V+AG+AIYD MQFI+  +ST C+G AASM S+L +AG  G RF  PN++I++H
Sbjct: 117 INSPGGSVSAGLAIYDAMQFIRCDVSTVCLGMAASMASVLTAAGAPGKRFVTPNSQIMIH 176

Query: 139 QPSGGFSG---QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           QP GG SG   Q +D +  A ++ K + RL  +   + GKT E++    +RDH ++A EA
Sbjct: 177 QPMGG-SGERTQQTDFDILANEMRKTRDRLEGLLATHTGKTVEQIHADSERDHWLTAEEA 235

Query: 196 CDWGVVDKVLMSR 208
             +G+VD ++ SR
Sbjct: 236 KAYGLVDDIITSR 248


>gi|326475380|gb|EGD99389.1| ATP-dependent Clp protease [Trichophyton tonsurans CBS 112818]
          Length = 246

 Score =  206 bits (524), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 96/177 (54%), Positives = 138/177 (77%), Gaps = 3/177 (1%)

Query: 42  ERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP 101
           ERIV + G++++ ++  I AQLLFLEA+NP+K I LYINSPGG VTAG+AIYDTM +I+ 
Sbjct: 67  ERIVCLNGEVDETLSAAIVAQLLFLEADNPEKPIQLYINSPGGSVTAGLAIYDTMTYIQS 126

Query: 102 PISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKI 161
           P+ST C+GQAASMGSLLL  GE G R+ LP++ +++HQPSGG+ GQA+DI  HA++I+++
Sbjct: 127 PVSTICVGQAASMGSLLLCGGEAGKRYCLPHSSVMIHQPSGGYFGQATDIAIHAKEILRV 186

Query: 162 KRRLNEIYVKN-CGK--TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
           + +LN+IY ++  GK  T EE+EK ++RD+ M A EA + G+VD +L  R+  +E+S
Sbjct: 187 RHQLNQIYKRHLTGKEMTLEEIEKLMERDYFMGAKEALEMGIVDSILDRRMPSKEES 243


>gi|326482374|gb|EGE06384.1| ATP-dependent Clp protease proteolytic subunit [Trichophyton
           equinum CBS 127.97]
          Length = 223

 Score =  206 bits (523), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 96/177 (54%), Positives = 138/177 (77%), Gaps = 3/177 (1%)

Query: 42  ERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP 101
           ERIV + G++++ ++  I AQLLFLEA+NP+K I LYINSPGG VTAG+AIYDTM +I+ 
Sbjct: 44  ERIVCLNGEVDETLSAAIVAQLLFLEADNPEKPIQLYINSPGGSVTAGLAIYDTMTYIQS 103

Query: 102 PISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKI 161
           P+ST C+GQAASMGSLLL  GE G R+ LP++ +++HQPSGG+ GQA+DI  HA++I+++
Sbjct: 104 PVSTICVGQAASMGSLLLCGGEAGKRYCLPHSSVMIHQPSGGYFGQATDIAIHAKEILRV 163

Query: 162 KRRLNEIYVKN-CGK--TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
           + +LN+IY ++  GK  T EE+EK ++RD+ M A EA + G+VD +L  R+  +E+S
Sbjct: 164 RHQLNQIYKRHLTGKEMTLEEIEKLMERDYFMGAKEALEMGIVDSILDRRMPSKEES 220


>gi|113953920|ref|YP_730624.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           CC9311]
 gi|113881271|gb|ABI46229.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. CC9311]
          Length = 196

 Score =  206 bits (523), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 96/188 (51%), Positives = 135/188 (71%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+E++ RGER++DIYSRLL+ERI+F+   +    A  I AQLLFLEAE+P+KEI L
Sbjct: 1   MIPIVIEESGRGERAFDIYSRLLRERIIFLGEPVTSDSANRIVAQLLFLEAEDPEKEIFL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG V  G+ I+DTMQ IKP + T C+G AASMG+ LL AG KG R +L ++RI++
Sbjct: 61  YVNSPGGSVYDGLGIFDTMQHIKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG SGQASDI   A +I+ +K RLN       G+  ++++   DRD  MS  +A +
Sbjct: 121 HQPLGGASGQASDIRIQADEILFLKDRLNHELADRTGQPLDKIQADTDRDFFMSPQQAME 180

Query: 198 WGVVDKVL 205
           +G++D V+
Sbjct: 181 YGLIDNVI 188


>gi|124023248|ref|YP_001017555.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus str. MIT 9303]
 gi|123963534|gb|ABM78290.1| Clp protease subunit [Prochlorococcus marinus str. MIT 9303]
          Length = 197

 Score =  206 bits (523), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 96/191 (50%), Positives = 135/191 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+E++ RGER++DIYSRLL+ERI+F+   +    A  I AQ+LFLEAE+P+K+I L
Sbjct: 1   MIPIVIEESGRGERAFDIYSRLLRERIIFLGEPVTSDSANRIVAQMLFLEAEDPEKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I+DTMQ +KP + T C+G AASMG+ LL AG  G R +L ++RI++
Sbjct: 61  YINSPGGSVYDGLGIFDTMQHVKPDVQTVCVGLAASMGAFLLCAGAMGKRSSLQHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A +I+ +K RLN +     G+  E +++  DRD  MS +EA  
Sbjct: 121 HQPLGGARGQASDIRIQADEILFLKDRLNRVLADRTGQPLERIQEDTDRDFFMSPTEAVG 180

Query: 198 WGVVDKVLMSR 208
           +G+VD V+  R
Sbjct: 181 YGLVDSVIDKR 191


>gi|255018646|ref|ZP_05290772.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes FSL F2-515]
          Length = 161

 Score =  206 bits (523), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 94/160 (58%), Positives = 125/160 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT+RGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL+A++P+K+I
Sbjct: 1   MNLIPTVIEQTSRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG ++AGMAIYDTM F+K  + T  MG AASMGS LL+AG  G RFALPNA I
Sbjct: 61  FLYINSPGGSISAGMAIYDTMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK 175
           ++HQP GG  GQA++IE  A+ I+KIK R+N I  +  G+
Sbjct: 121 MIHQPLGGAQGQATEIEIAARHILKIKERMNTIMAEKTGQ 160


>gi|163847092|ref|YP_001635136.1| endopeptidase Clp [Chloroflexus aurantiacus J-10-fl]
 gi|222524926|ref|YP_002569397.1| Endopeptidase Clp [Chloroflexus sp. Y-400-fl]
 gi|163668381|gb|ABY34747.1| Endopeptidase Clp [Chloroflexus aurantiacus J-10-fl]
 gi|222448805|gb|ACM53071.1| Endopeptidase Clp [Chloroflexus sp. Y-400-fl]
          Length = 221

 Score =  206 bits (523), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 94/196 (47%), Positives = 144/196 (73%), Gaps = 1/196 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+PMVVE T+RGER++DIYSRLLKERIV +   I+D +A LI AQLLFLE+E+P ++I L
Sbjct: 27  LIPMVVESTSRGERAFDIYSRLLKERIVILGTPIDDQIANLIVAQLLFLESEDPDRDIWL 86

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+ IYDTM  I+P ++T C+G A SM + +L+ G KG R++LP++ I +
Sbjct: 87  YINSPGGSVTAGLGIYDTMHHIRPDVATVCVGMAGSMATPILAGGAKGKRYSLPHSTIHM 146

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           H   GG  G A D+E  A++++++++ + E+  K+ G+  E + K  DRD  M+  +A +
Sbjct: 147 HPAGGGARGYAPDVEIMARELLRLQQLVRELLAKDTGQPIERIAKDFDRDLFMTPEQAKE 206

Query: 198 WGVVDKVLMSRIDIEE 213
           +G++D++L +R D+++
Sbjct: 207 YGIIDEIL-TREDVKK 221


>gi|33862948|ref|NP_894508.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus str. MIT 9313]
 gi|67460517|sp|Q7V7R2|CLPP3_PROMM RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
           AltName: Full=Endopeptidase Clp 3
 gi|33634865|emb|CAE20851.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9313]
          Length = 197

 Score =  206 bits (523), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 96/191 (50%), Positives = 135/191 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+E++ RGER++DIYSRLL+ERI+F+   +    A  I AQ+LFLEAE+P+K+I L
Sbjct: 1   MIPIVIEESGRGERAFDIYSRLLRERIIFLGEPVTSDSANRIVAQMLFLEAEDPEKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I+DTMQ +KP + T C+G AASMG+ LL AG  G R +L ++RI++
Sbjct: 61  YINSPGGSVYDGLGIFDTMQHVKPDVQTVCVGLAASMGAFLLCAGAMGKRSSLQHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A +I+ +K RLN +     G+  E +++  DRD  MS +EA  
Sbjct: 121 HQPLGGARGQASDIRIQADEILFLKDRLNRVLADRTGQPLERIQEDTDRDFFMSPAEAVG 180

Query: 198 WGVVDKVLMSR 208
           +G+VD V+  R
Sbjct: 181 YGLVDSVIDKR 191


>gi|322387412|ref|ZP_08061022.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           infantis ATCC 700779]
 gi|321141941|gb|EFX37436.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           infantis ATCC 700779]
          Length = 196

 Score =  206 bits (523), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 95/190 (50%), Positives = 139/190 (73%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K ++ L +I   N GK+ E++ K  +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRKTLEQILADNSGKSVEQIHKDAERDYWMSAQET 180

Query: 196 CDWGVVDKVL 205
            D+G +D+++
Sbjct: 181 LDYGFIDEIM 190


>gi|75907528|ref|YP_321824.1| ATP-dependent Clp protease proteolytic subunit [Anabaena variabilis
           ATCC 29413]
 gi|115311345|sp|Q3MDK7|CLPP2_ANAVT RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|75701253|gb|ABA20929.1| ATP-dependent Clp protease proteolytic subunit ClpP [Anabaena
           variabilis ATCC 29413]
          Length = 197

 Score =  206 bits (523), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 94/175 (53%), Positives = 134/175 (76%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IY RL +ERI+F+   ++D +A  I A +L+L++E+P K+I LYINSPGG+VT+G+AIYD
Sbjct: 23  IYDRLYRERIIFLGRDVDDEIANQIIAVMLYLDSEDPGKDIYLYINSPGGMVTSGLAIYD 82

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ IK  + T C+G AASMGS LL+AG KG R ALP++RI++HQPSGG  GQA+DIE  
Sbjct: 83  TMQHIKSDVVTICVGLAASMGSFLLAAGTKGKRLALPHSRIMIHQPSGGTRGQATDIEIE 142

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           A++I++I+ +LN+IY  N  +   ++EK +DRD  MSA EA ++G++D+V+  RI
Sbjct: 143 AREILRIRHQLNQIYANNTNQPLAKIEKDMDRDFFMSAQEAKEYGLIDRVIEERI 197


>gi|313114091|ref|ZP_07799643.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310623500|gb|EFQ06903.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 198

 Score =  205 bits (522), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 101/198 (51%), Positives = 148/198 (74%), Gaps = 5/198 (2%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP VVEQ++ GERSYDI+SRLL +RI+ ++  + D  A+L+ AQLL+LE ++P K+I
Sbjct: 1   MSFVPYVVEQSSHGERSYDIFSRLLNDRIIVLSEDVNDTSASLVVAQLLYLEGQDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG ++AGMAI+DTMQ+IK  +ST CMG AASMG+ LL++G KG RFALPN+ I
Sbjct: 61  SLYINSPGGSISAGMAIHDTMQYIKCDVSTICMGMAASMGAFLLASGTKGKRFALPNSEI 120

Query: 136 LLHQP-----SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           L+HQP      GG SGQ +DI+ HA+ +V I+ ++N +  +  G+  E+++   +RD+ M
Sbjct: 121 LIHQPLIGGQGGGLSGQTTDIKIHAEHMVYIRDKMNRMLSEYTGQPLEKIQLDTERDNYM 180

Query: 191 SASEACDWGVVDKVLMSR 208
           SA +A ++G++D+V+  R
Sbjct: 181 SALQAKEYGLIDEVIAHR 198


>gi|300173717|ref|YP_003772883.1| ATP-dependent Clp protease proteolytic subunit [Leuconostoc
           gasicomitatum LMG 18811]
 gi|299888096|emb|CBL92064.1| ATP-dependent Clp protease proteolytic subunit [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 200

 Score =  205 bits (522), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 100/188 (53%), Positives = 130/188 (69%), Gaps = 2/188 (1%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P V+EQT  G  SYD+ SRLLK+RI+ V G++ED MAT I AQLLFLEA++P KEIS+YI
Sbjct: 3   PGVIEQTANGRESYDLPSRLLKDRIILVQGEVEDSMATSIVAQLLFLEAQDPTKEISMYI 62

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VTAG++I DTM FIK P++T  MG AASMG+++ S+GEKG RF LPNA  L+HQ
Sbjct: 63  NSPGGSVTAGLSITDTMNFIKAPVTTIVMGLAASMGTIIASSGEKGHRFMLPNAEYLIHQ 122

Query: 140 PSGGFSG--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           P GG  G  Q +D+   A  + K + +LN+I      K  E +    +RD+ MSA E   
Sbjct: 123 PMGGAVGGTQQTDMAIIADQLTKTRAKLNKILADASDKDLETIAHDTERDNWMSAEETLA 182

Query: 198 WGVVDKVL 205
           +G +D +L
Sbjct: 183 YGFIDGIL 190


>gi|169351385|ref|ZP_02868323.1| hypothetical protein CLOSPI_02165 [Clostridium spiroforme DSM 1552]
 gi|169291607|gb|EDS73740.1| hypothetical protein CLOSPI_02165 [Clostridium spiroforme DSM 1552]
          Length = 190

 Score =  205 bits (522), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 95/188 (50%), Positives = 136/188 (72%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P V+E+TN+ E +YDIYSRLL++RI+ +TG I+D MA+ I  QLL+LE+ +   +I +
Sbjct: 3   LIPTVIEKTNQREYAYDIYSRLLEDRIILLTGTIDDKMASSIVGQLLYLESIDNSADIYM 62

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG + AGMAIYDTM FIK  +ST  +G AASM + LLSAG KG R +LPN+ I++
Sbjct: 63  YINSPGGSINAGMAIYDTMNFIKCDVSTIVIGMAASMAAFLLSAGTKGKRCSLPNSEIMI 122

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP G F GQASDIE  A+ I+K K +LN++  KN  +   ++    DRD+ +  +EA  
Sbjct: 123 HQPLGAFEGQASDIEISAKRILKQKEKLNKLLSKNTNQPLSKIITDTDRDYFLEPNEALV 182

Query: 198 WGVVDKVL 205
           +G++D+++
Sbjct: 183 YGIIDEII 190


>gi|126657894|ref|ZP_01729047.1| ATP-dependent Clp protease proteolytic subunit [Cyanothece sp.
           CCY0110]
 gi|126620834|gb|EAZ91550.1| ATP-dependent Clp protease proteolytic subunit [Cyanothece sp.
           CCY0110]
          Length = 199

 Score =  205 bits (522), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 100/180 (55%), Positives = 134/180 (74%), Gaps = 1/180 (0%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ER  DIY+RL +ERI+F+  ++ D +A  I A LL+L++E+P K I LYINSPGG VTAG
Sbjct: 18  ERWIDIYTRLGQERIIFLGQEVTDGIANRIVALLLYLDSEDPSKPIYLYINSPGGSVTAG 77

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS-GQA 148
           MAIYDTMQ+IK  + T C+G AASMGS LL+AG  G R ALP+ARI++HQP GG    QA
Sbjct: 78  MAIYDTMQYIKSEVITICVGLAASMGSFLLAAGTPGKRLALPHARIMIHQPMGGTGRRQA 137

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           SDIE  A +I++I+ +LN++    CG+T E++EK  DRD+ MSA EA ++G++DKV+  R
Sbjct: 138 SDIEIEANEILRIRSQLNQLLANQCGQTLEKIEKDTDRDYFMSAEEAKEYGLIDKVIEER 197


>gi|295105645|emb|CBL03189.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Faecalibacterium prausnitzii SL3/3]
          Length = 198

 Score =  205 bits (522), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 99/198 (50%), Positives = 148/198 (74%), Gaps = 5/198 (2%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP VVEQ+  GERSYDI+SRLL +RI+ ++  + D  A+L+ AQLL+LE ++P K+I
Sbjct: 1   MSFVPYVVEQSAHGERSYDIFSRLLNDRIIVLSEDVNDTTASLVVAQLLYLEGQDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG ++AGMAI+DTMQ+IK  +ST CMG AASMG+ LL++G KG RFALPNA I
Sbjct: 61  SLYINSPGGSISAGMAIHDTMQYIKCDVSTICMGMAASMGAFLLASGTKGKRFALPNAEI 120

Query: 136 LLHQP-----SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           ++HQP      GG SGQ +DI+ HA+ +V I+ ++N +  +  G+  E++++  +RD+ +
Sbjct: 121 MIHQPLIGGQGGGLSGQTTDIKIHAEHMVYIRDKMNRMLSEYTGQPLEKIQQDTERDNYL 180

Query: 191 SASEACDWGVVDKVLMSR 208
           +A +A ++G++D+V+  R
Sbjct: 181 TAQQAKEYGLIDEVIAHR 198


>gi|219849052|ref|YP_002463485.1| Endopeptidase Clp [Chloroflexus aggregans DSM 9485]
 gi|219543311|gb|ACL25049.1| Endopeptidase Clp [Chloroflexus aggregans DSM 9485]
          Length = 221

 Score =  205 bits (522), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 92/189 (48%), Positives = 139/189 (73%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+PMVVE T+RGER++DIYSRLLKERIV +   I+D +A LI AQLLFLE+E+P ++I L
Sbjct: 27  LIPMVVESTSRGERAFDIYSRLLKERIVILGTPIDDQIANLIVAQLLFLESEDPDRDIWL 86

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+ IYDTM  I+P ++T C+G A SM + +L+ G KG R++LP++ I +
Sbjct: 87  YINSPGGSVTAGLGIYDTMHHIRPDVATVCVGMAGSMATPILAGGAKGKRYSLPHSTIHM 146

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           H   GG  G A D+E  A++++++++ + E+  K+ G+  E + K  DRD  M+  +A +
Sbjct: 147 HPAGGGARGYAPDVEIMARELLRLQQLVRELLAKDTGQPIERIAKDFDRDLFMTPEQAKE 206

Query: 198 WGVVDKVLM 206
           +G++D++L+
Sbjct: 207 YGIIDEILI 215


>gi|325970910|ref|YP_004247101.1| ATP-dependent Clp protease proteolytic subunit [Spirochaeta sp.
           Buddy]
 gi|324026148|gb|ADY12907.1| ATP-dependent Clp protease proteolytic subunit [Spirochaeta sp.
           Buddy]
          Length = 202

 Score =  205 bits (522), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 98/187 (52%), Positives = 146/187 (78%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +PMVVEQ+  GER+YDI+SRLLK+RI+F+ G+I D  A L+ AQ+LFL++E+  K+ISLY
Sbjct: 12  IPMVVEQSGVGERAYDIFSRLLKDRIIFLDGEIHDANADLVVAQMLFLDSEDSTKDISLY 71

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDT+Q++   + T CMGQAASM +LLL++G +G RF LP+AR+++H
Sbjct: 72  INSPGGSVTAGLAIYDTIQYLHCKVQTICMGQAASMAALLLASGSEGKRFMLPSARVMIH 131

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQ++DI  HA++I ++K+   +I  ++  K++E+V K ++RD  +S+ +A  +
Sbjct: 132 QPWGGVEGQSTDISIHAKEISRLKKLTIDIIAQHTHKSFEQVSKDVERDFFLSSDDAVSY 191

Query: 199 GVVDKVL 205
           G+VD V+
Sbjct: 192 GIVDSVM 198


>gi|17231849|ref|NP_488397.1| ATP-dependent Clp protease proteolytic subunit [Nostoc sp. PCC
           7120]
 gi|21759069|sp|Q8YP43|CLPP3_ANASP RecName: Full=Probable ATP-dependent Clp protease proteolytic
           subunit 3; AltName: Full=Endopeptidase Clp 3
 gi|17133493|dbj|BAB76056.1| ATP-dependent Clp protease proteolytic subunit [Nostoc sp. PCC
           7120]
          Length = 197

 Score =  205 bits (522), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 93/175 (53%), Positives = 134/175 (76%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IY RL +ERI+F+   ++D +A  I A +L+L++E+P K+I LYINSPGG+VT+G+AIYD
Sbjct: 23  IYDRLYRERIIFLGRDVDDEIANQIIAVMLYLDSEDPGKDIYLYINSPGGMVTSGLAIYD 82

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ IK  + T C+G AASMGS LL+AG KG R ALP++RI++HQPSGG  GQA+DIE  
Sbjct: 83  TMQHIKSDVVTICVGLAASMGSFLLAAGTKGKRMALPHSRIMIHQPSGGTRGQATDIEIE 142

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           A++I++I+ +LN+IY  N  +   ++EK +DRD  MSA EA ++G++D+V+  R+
Sbjct: 143 AREILRIRHQLNQIYANNTSQPLAKIEKDMDRDFFMSAQEAMEYGLIDRVIEERV 197


>gi|124025671|ref|YP_001014787.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus str. NATL1A]
 gi|123960739|gb|ABM75522.1| Clp protease subunit [Prochlorococcus marinus str. NATL1A]
          Length = 205

 Score =  205 bits (522), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 99/198 (50%), Positives = 137/198 (69%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
           ++  +  ++P+V+E++ RGER++DIYSRLL+ERIVF+   +    A  I AQLLFLEA++
Sbjct: 3   TDHYYRSMIPIVIEESGRGERAFDIYSRLLRERIVFLGEPVTSDSANRIVAQLLFLEADD 62

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
           P K+I LYINSPGG V  G+ I+DTMQ +KP I T C+G AASMG+ LL AG KG R +L
Sbjct: 63  PDKDIFLYINSPGGSVYDGLGIFDTMQHVKPDIHTVCVGLAASMGAFLLCAGAKGKRSSL 122

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
            ++RI++HQP GG  GQASDI   A +I+ IK +LN+      G+  E + +  DRD  M
Sbjct: 123 LHSRIMIHQPLGGARGQASDIRIQADEILFIKDKLNKELSDRTGQPIERIREDTDRDFYM 182

Query: 191 SASEACDWGVVDKVLMSR 208
           S SEA ++G++D V   R
Sbjct: 183 SPSEAIEYGIIDNVFNKR 200


>gi|113475006|ref|YP_721067.1| ATP-dependent Clp protease proteolytic subunit [Trichodesmium
           erythraeum IMS101]
 gi|110166054|gb|ABG50594.1| ATP-dependent Clp protease proteolytic subunit ClpP [Trichodesmium
           erythraeum IMS101]
          Length = 196

 Score =  205 bits (522), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 94/179 (52%), Positives = 134/179 (74%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ER  DIY+RL +ERI+F+  ++ D +A  I A +L+L++++P K I LYINSPGG VTAG
Sbjct: 18  ERWIDIYTRLGQERIIFLGQEVTDGLANRIVAYMLYLDSDDPNKPIYLYINSPGGSVTAG 77

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
           +AIYDTMQ+IK  + T C+G AASMGS LL+AG KG R ALPN+RI++HQP GG  GQA+
Sbjct: 78  LAIYDTMQYIKADVITICLGLAASMGSFLLAAGTKGKRLALPNSRIMIHQPMGGTRGQAT 137

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           DIE  A +I++++  LN +  +  G++ E++EK  DRD+ MSA EA ++G++D+V+  R
Sbjct: 138 DIEIEANEILRVRSELNNMLAERTGQSLEKIEKDTDRDYYMSAEEAKEYGLIDQVIEER 196


>gi|116074798|ref|ZP_01472059.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           RS9916]
 gi|116068020|gb|EAU73773.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           RS9916]
          Length = 196

 Score =  205 bits (522), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 99/191 (51%), Positives = 136/191 (71%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+E++ RGER++DIYSRLL+ERIVF+   +    A  I AQLLFLEAE+P+K+I L
Sbjct: 1   MIPIVIEESGRGERAFDIYSRLLRERIVFLGEPVTSESANRIVAQLLFLEAEDPEKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I+DTMQ IKP + T C+G AASMG+ LL AG KG R +L ++RI++
Sbjct: 61  YINSPGGSVYDGLGIFDTMQHIKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLRHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG SGQASDI   A +I+ +K +LN    +  G+  E+++   DRD  MS  EA  
Sbjct: 121 HQPLGGASGQASDIRIQADEILFLKDKLNRELAERSGQPLEKMQVDTDRDFFMSPDEAVT 180

Query: 198 WGVVDKVLMSR 208
           +G++D V+  R
Sbjct: 181 YGLIDTVIDRR 191


>gi|315042532|ref|XP_003170642.1| ATP-dependent Clp protease proteolytic subunit [Arthroderma gypseum
           CBS 118893]
 gi|311344431|gb|EFR03634.1| ATP-dependent Clp protease proteolytic subunit [Arthroderma gypseum
           CBS 118893]
          Length = 222

 Score =  205 bits (521), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 95/177 (53%), Positives = 138/177 (77%), Gaps = 3/177 (1%)

Query: 42  ERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP 101
           ERIV + G++++ ++  I AQLLFLEA+NP+K I LYINSPGG VTAG+AIYDTM +I+ 
Sbjct: 44  ERIVCLNGEVDETLSAAIVAQLLFLEADNPEKPIQLYINSPGGSVTAGLAIYDTMTYIQS 103

Query: 102 PISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKI 161
           P+ST C+GQAASMGSLLL  GE G R+ LP++ +++HQPSGG+ GQA+DI  HA++I+++
Sbjct: 104 PVSTICVGQAASMGSLLLCGGEAGKRYCLPHSSVMIHQPSGGYFGQATDIAIHAKEILRV 163

Query: 162 KRRLNEIYVKN-CGK--TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
           + +LN+IY ++  GK  T +E+EK ++RD+ M A EA + G+VD +L  R+  +E+S
Sbjct: 164 RHQLNQIYKRHLTGKEMTLDEIEKLMERDYFMGAKEALEMGIVDSILDRRVPSKEES 220


>gi|172036826|ref|YP_001803327.1| ATP-dependent Clp protease proteolytic subunit [Cyanothece sp. ATCC
           51142]
 gi|171698280|gb|ACB51261.1| ATP-dependent Clp protease, proteolytic subunit [Cyanothece sp.
           ATCC 51142]
          Length = 199

 Score =  205 bits (521), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 100/180 (55%), Positives = 134/180 (74%), Gaps = 1/180 (0%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ER  DIY+RL +ERI+F+  ++ D +A  I A LL+L++E+P K I LYINSPGG VTAG
Sbjct: 18  ERWIDIYTRLGQERIIFLGQEVNDAIANRIVALLLYLDSEDPSKPIYLYINSPGGSVTAG 77

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS-GQA 148
           MAIYDTMQ+IK  + T C+G AASMGS LL+AG  G R ALP+ARI++HQP GG    QA
Sbjct: 78  MAIYDTMQYIKSEVITICVGLAASMGSFLLAAGTPGKRLALPHARIMIHQPMGGTGRRQA 137

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           SDIE  A +I++I+ +LN+I    CG++ E++EK  DRD+ MSA EA ++G++DKV+  R
Sbjct: 138 SDIEIEANEILRIRAQLNQILADKCGQSLEKIEKDTDRDYFMSAEEAKEYGLIDKVIEER 197


>gi|157413171|ref|YP_001484037.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus str. MIT 9215]
 gi|254526501|ref|ZP_05138553.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Prochlorococcus marinus str. MIT 9202]
 gi|157387746|gb|ABV50451.1| Clp protease subunit [Prochlorococcus marinus str. MIT 9215]
 gi|221537925|gb|EEE40378.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Prochlorococcus marinus str. MIT 9202]
          Length = 195

 Score =  205 bits (521), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 97/188 (51%), Positives = 135/188 (71%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+E++   ER +DIYSRLL+ERI+F+  Q+    A  I AQLLFLEAE+P+K+I +
Sbjct: 1   MIPLVLEESGGSERVFDIYSRLLRERIIFLGEQVTSETANRIVAQLLFLEAEDPEKDIYM 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I+DTMQ +KP I T C+G AASMG+ LL+AG KG R +L ++RI++
Sbjct: 61  YINSPGGSVYDGLGIFDTMQHVKPDIHTVCVGLAASMGAFLLAAGTKGKRSSLRHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A +I+ +K RLN    +  GK +E +++  DRD  MS  EA +
Sbjct: 121 HQPLGGARGQASDIRIQADEILFLKERLNTELSERTGKDFETIKEDTDRDFYMSPKEAVE 180

Query: 198 WGVVDKVL 205
           +G++D VL
Sbjct: 181 YGLIDLVL 188


>gi|219847585|ref|YP_002462018.1| Endopeptidase Clp [Chloroflexus aggregans DSM 9485]
 gi|219541844|gb|ACL23582.1| Endopeptidase Clp [Chloroflexus aggregans DSM 9485]
          Length = 195

 Score =  205 bits (521), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 92/190 (48%), Positives = 138/190 (72%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP +VE+T+RGERS+DI+SRLLKER++ +   I+D +A+ + AQLL L+ ++P+++I +Y
Sbjct: 6   VPTIVERTSRGERSWDIFSRLLKERVIIIGEPIDDELASSVVAQLLVLQQQDPERDIWMY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGV+ AG+AIYDTMQ + P + T C+G+AASM ++LL AG KG RFALP+A I  H
Sbjct: 66  INSPGGVIRAGLAIYDTMQLVTPDVCTVCVGRAASMATVLLCAGAKGKRFALPHATIHSH 125

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
              GG  G A D++    ++++++R L EI  K+ G+T E +E    RD  M+AS+A ++
Sbjct: 126 PAGGGVEGYAPDVQIAVDEMLRLQRLLREIMAKHSGQTVERLEADFSRDFYMTASQAVEY 185

Query: 199 GVVDKVLMSR 208
           G++D +L  R
Sbjct: 186 GLIDAILTPR 195


>gi|290579971|ref|YP_003484363.1| putative ATP-dependent Clp protease proteolytic subunit
           [Streptococcus mutans NN2025]
 gi|254996870|dbj|BAH87471.1| putative ATP-dependent Clp protease proteolytic subunit
           [Streptococcus mutans NN2025]
          Length = 196

 Score =  205 bits (521), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 98/190 (51%), Positives = 138/190 (72%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  I AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  L+
Sbjct: 61  YINSPGGSVSAGLAIVDTMNFIKSDVQTIVMGIAASMGTIIASSGAKGKRFMLPNAEYLI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q SD+   A+ ++K +++L +I   N GKT +++ K  +RD+ M A E 
Sbjct: 121 HQPMGGTGGGTQQSDMAIAAEQLLKTRKKLEKILSDNSGKTVKQIHKDAERDYWMDAKET 180

Query: 196 CDWGVVDKVL 205
             +G +D+++
Sbjct: 181 LKYGFIDEIM 190


>gi|298491711|ref|YP_003721888.1| endopeptidase Clp ['Nostoc azollae' 0708]
 gi|298233629|gb|ADI64765.1| Endopeptidase Clp ['Nostoc azollae' 0708]
          Length = 197

 Score =  205 bits (521), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 96/191 (50%), Positives = 140/191 (73%), Gaps = 1/191 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP  +  +N  E+  D+  RL +ERI+F+T +++D +A  I A  L+L++++  K I LY
Sbjct: 8   VPYRLPGSNY-EQWIDLEDRLFRERIIFLTEEVDDGIANAIVAYFLYLDSDDQTKPIYLY 66

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAGMAIYDTMQ+IK  + T C+G AASMGS LL+ G +G R ALP++RI++H
Sbjct: 67  INSPGGSVTAGMAIYDTMQYIKSEVVTICVGLAASMGSFLLATGTQGKRLALPHSRIMIH 126

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  GQA+DI+  AQ+I++I+ +LN+IY  N G+   ++EK +DRD  MSA EA ++
Sbjct: 127 QPSGGTRGQATDIQIEAQEILRIRSQLNQIYADNTGQALAKIEKDMDRDFFMSAQEAKEY 186

Query: 199 GVVDKVLMSRI 209
           G++D+V+  R+
Sbjct: 187 GLIDRVIEERL 197


>gi|123968338|ref|YP_001009196.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus str. AS9601]
 gi|123198448|gb|ABM70089.1| Clp protease subunit [Prochlorococcus marinus str. AS9601]
          Length = 195

 Score =  205 bits (521), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 97/188 (51%), Positives = 135/188 (71%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+E++   ER +DIYSRLL+ERI+F+  Q+    A  I AQLLFLEAE+P K+I +
Sbjct: 1   MIPLVLEESGGSERVFDIYSRLLRERIIFLGEQVTSETANRIVAQLLFLEAEDPDKDIYM 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I+DTMQ +KP I T C+G AASMG+ LL+AG KG R +L ++RI++
Sbjct: 61  YINSPGGSVYDGLGIFDTMQHVKPDIHTVCVGLAASMGAFLLAAGTKGKRSSLRHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A +I+ +K RLN    +  GK Y+ +++  DRD  MS +EA +
Sbjct: 121 HQPLGGARGQASDIRIQADEILFLKERLNTELSERTGKDYDTIKEDTDRDFYMSPNEAVE 180

Query: 198 WGVVDKVL 205
           +G++D VL
Sbjct: 181 YGLIDLVL 188


>gi|72382132|ref|YP_291487.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus str. NATL2A]
 gi|115311342|sp|Q46L44|CLPP1_PROMT RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|72001982|gb|AAZ57784.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Prochlorococcus marinus str. NATL2A]
          Length = 196

 Score =  204 bits (520), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 99/191 (51%), Positives = 134/191 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+E++ RGER++DIYSRLL+ERIVF+   +    A  I AQLLFLEA++P K+I L
Sbjct: 1   MIPIVIEESGRGERAFDIYSRLLRERIVFLGEPVTSDSANRIVAQLLFLEADDPDKDIFL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I+DTMQ +KP I T C+G AASMG+ LL AG KG R +L ++RI++
Sbjct: 61  YINSPGGSVYDGLGIFDTMQHVKPDIHTVCVGLAASMGAFLLCAGAKGKRSSLLHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A +I+ IK +LN+      G+  E + +  DRD  MS SEA +
Sbjct: 121 HQPLGGARGQASDIRIQADEILFIKDKLNKELSDRTGQPIERIREDTDRDFYMSPSEAIE 180

Query: 198 WGVVDKVLMSR 208
           +G++D V   R
Sbjct: 181 YGIIDNVFNKR 191


>gi|24380050|ref|NP_722005.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           mutans UA159]
 gi|60389781|sp|Q8DST7|CLPP_STRMU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|24378042|gb|AAN59311.1|AE014997_1 putative ATP-dependent Clp protease, proteolytic subunit
           [Streptococcus mutans UA159]
          Length = 196

 Score =  204 bits (520), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 98/190 (51%), Positives = 138/190 (72%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  I AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  L+
Sbjct: 61  YINSPGGSVSAGLAIVDTMNFIKSDVQTIVMGIAASMGTIIASSGAKGKRFMLPNAEYLI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q SD+   A+ ++K +++L +I   N GKT +++ K  +RD+ M A E 
Sbjct: 121 HQPMGGTGGGTQQSDMAIAAEQLLKTRKKLEKILSDNSGKTIKQIHKDAERDYWMDAKET 180

Query: 196 CDWGVVDKVL 205
             +G +D+++
Sbjct: 181 LKYGFIDEIM 190


>gi|300778994|ref|ZP_07088852.1| ATP-dependent Clp protease proteolytic subunit [Chryseobacterium
           gleum ATCC 35910]
 gi|300504504|gb|EFK35644.1| ATP-dependent Clp protease proteolytic subunit [Chryseobacterium
           gleum ATCC 35910]
          Length = 228

 Score =  204 bits (520), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 95/188 (50%), Positives = 139/188 (73%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P ++E+        D++SRL+ +RI+F+   I+D +A ++ AQLLFLE+ +P K+I +
Sbjct: 34  LTPYIMEERRLNVAQMDVFSRLMMDRIIFLGTGIDDQVANIVTAQLLFLESADPSKDIQI 93

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+ IYDTMQ IKP ++T C G AASMG++LL AGEKG R AL ++R+++
Sbjct: 94  YINSPGGSVYAGLGIYDTMQIIKPDVATICTGMAASMGAVLLVAGEKGKRSALKHSRVMI 153

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  G ASD+E + ++++K+K+ L EI   + G+TYE VEK+ DRD+ M++ EA  
Sbjct: 154 HQPSGGAQGVASDMEINLREMLKLKQELYEIIAHHSGQTYEWVEKSSDRDYWMTSEEAKG 213

Query: 198 WGVVDKVL 205
           +G+VD+VL
Sbjct: 214 YGMVDEVL 221


>gi|223982668|ref|ZP_03632900.1| hypothetical protein HOLDEFILI_00174 [Holdemania filiformis DSM
           12042]
 gi|223965367|gb|EEF69647.1| hypothetical protein HOLDEFILI_00174 [Holdemania filiformis DSM
           12042]
          Length = 193

 Score =  204 bits (520), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 91/190 (47%), Positives = 141/190 (74%), Gaps = 1/190 (0%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P ++EQ+ R +R+YD+ S LLKERI+ +T QI+D ++  +CAQLL+L + + Q +I
Sbjct: 1   MTLIPTIIEQSARSDRAYDLISCLLKERIILLTSQIDDTVSGNLCAQLLYLASRSSQ-DI 59

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG V+AG+AIYDTMQ I+  +ST CMG AASM ++LL+ G +G R+ALPN+ I
Sbjct: 60  QLYINSPGGSVSAGLAIYDTMQLIRCDVSTICMGMAASMAAVLLAGGTRGKRYALPNSEI 119

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+D++  A+ I++I++RLN +   + G++  E+ +  DRD   SA EA
Sbjct: 120 MIHQPLGGVQGQAADVKIAAEHILQIRQRLNTLLANDTGRSLREISEDSDRDRYFSAEEA 179

Query: 196 CDWGVVDKVL 205
            ++G++D ++
Sbjct: 180 KNYGLIDDLV 189


>gi|257439814|ref|ZP_05615569.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Faecalibacterium prausnitzii A2-165]
 gi|257197723|gb|EEU96007.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Faecalibacterium prausnitzii A2-165]
          Length = 198

 Score =  204 bits (520), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 101/198 (51%), Positives = 146/198 (73%), Gaps = 5/198 (2%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP VVEQ+  GERSYDI+SRLL +RI+ ++  + D  A+L+ AQLL+LE ++P K+I
Sbjct: 1   MSFVPYVVEQSAHGERSYDIFSRLLNDRIIVLSEDVNDTSASLVVAQLLYLEGQDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG ++AGMAI+DTMQ+IK  +ST CMG AASMG+ LL+ G KG RFALPN+ I
Sbjct: 61  SLYINSPGGSISAGMAIHDTMQYIKCDVSTICMGMAASMGAFLLAGGTKGKRFALPNSEI 120

Query: 136 LLHQP-----SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           L+HQP      GG SGQ +DI+ HA+ +V I+ ++N +  +  G+  E+++   +RD+ M
Sbjct: 121 LIHQPLIGGQGGGLSGQTTDIKIHAEHMVYIRDKMNHMLSEYTGQPLEKIQLDTERDNYM 180

Query: 191 SASEACDWGVVDKVLMSR 208
           +A EA ++G++D+V+  R
Sbjct: 181 TALEAKEYGLIDEVIAHR 198


>gi|319745540|gb|EFV97842.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           agalactiae ATCC 13813]
          Length = 200

 Score =  204 bits (520), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 97/190 (51%), Positives = 136/190 (71%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TGQ+ED+MA  I AQLLFL+A++  K+I L
Sbjct: 5   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGQVEDNMANSIIAQLLFLDAQDNTKDIYL 64

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 65  YVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMI 124

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q SD+   A+ ++K +  L +I   N G++ E+V    +RD  MSA E 
Sbjct: 125 HQPMGGTGGGTQQSDMAIAAEHLLKTRHTLEKILADNSGQSIEKVHDDAERDRWMSAQET 184

Query: 196 CDWGVVDKVL 205
            D+G +D ++
Sbjct: 185 LDYGFIDAIM 194


>gi|203284513|ref|YP_002222253.1| ATP-dependent Clp protease proteolytic component [Borrelia duttonii
           Ly]
 gi|203288047|ref|YP_002223062.1| ATP-dependent Clp protease proteolytic component [Borrelia
           recurrentis A1]
 gi|201083956|gb|ACH93547.1| ATP-dependent Clp protease proteolytic component [Borrelia duttonii
           Ly]
 gi|201085267|gb|ACH94841.1| ATP-dependent Clp protease proteolytic component [Borrelia
           recurrentis A1]
          Length = 199

 Score =  204 bits (520), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 94/189 (49%), Positives = 137/189 (72%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP VVE T   ER +DIYSRLL++RI+F++G+I D     + AQLLFLE+E+ +K+I L
Sbjct: 9   LVPTVVEHTGNYERVFDIYSRLLRDRIIFLSGEINDLRGDTVIAQLLFLESEDSKKDIYL 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TAG+AIYDTMQ+IKP + T C+GQAASM + LL+ G  G R +L  +RI++
Sbjct: 69  YINSPGGSITAGLAIYDTMQYIKPDVRTICIGQAASMAAFLLAGGAVGKRESLSYSRIMI 128

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A +I+++KR + +I  +  G + E++   ++RD+ M+   A +
Sbjct: 129 HQPWGGIGGQASDISIQANEIIRLKRLIIDIMSEKIGVSKEKLALDIERDYFMTPEGALN 188

Query: 198 WGVVDKVLM 206
           +G++D +L+
Sbjct: 189 YGIIDSILV 197


>gi|255535603|ref|YP_003095974.1| ATP-dependent Clp protease proteolytic subunit [Flavobacteriaceae
           bacterium 3519-10]
 gi|255341799|gb|ACU07912.1| ATP-dependent Clp protease proteolytic subunit [Flavobacteriaceae
           bacterium 3519-10]
          Length = 228

 Score =  204 bits (520), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 96/193 (49%), Positives = 141/193 (73%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P ++E+        D++SRL+ +RI+F+   I+D +A ++ AQLLFLE+ +  K+I +
Sbjct: 34  LTPYIMEERRLNVAQMDVFSRLMMDRIIFLGTGIDDQVANIVTAQLLFLESSDASKDIQI 93

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+ IYDTMQ IKP +ST C G AASMG++LL AGEKG R AL ++R+++
Sbjct: 94  YINSPGGSVYAGLGIYDTMQIIKPDVSTICTGMAASMGAVLLVAGEKGKRSALKHSRVMI 153

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  G ASD+E + ++++K+K+ L +I   + G+TYE VEK  DRD+ M++SEA +
Sbjct: 154 HQPSGGAQGVASDMEINLREMLKLKKELYDIISIHSGQTYEWVEKASDRDYWMTSSEAKE 213

Query: 198 WGVVDKVLMSRID 210
           +G+VD+VL  + D
Sbjct: 214 YGMVDEVLERKTD 226


>gi|186681465|ref|YP_001864661.1| ATP-dependent Clp protease proteolytic subunit [Nostoc punctiforme
           PCC 73102]
 gi|186463917|gb|ACC79718.1| peptidase S14, ClpP [Nostoc punctiforme PCC 73102]
          Length = 203

 Score =  204 bits (520), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 95/177 (53%), Positives = 134/177 (75%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IY RL +ERI+F+   I+D +A  I A +L+L++++P K+I LYINSPGG+VT+GMAI+D
Sbjct: 23  IYDRLYRERIIFLGRDIDDEIANQIIAVMLYLDSDDPGKDIYLYINSPGGMVTSGMAIFD 82

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ IK  + T C+G AASMGS LL+AG KG R ALP++RI++HQPSGG  GQA+DIE  
Sbjct: 83  TMQHIKSDVVTICVGLAASMGSFLLAAGTKGKRLALPHSRIMIHQPSGGTRGQATDIEIE 142

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           A++I++I+ +LN IY    G+T  ++EK +DRD  MSA EA ++G++D+V+  R  I
Sbjct: 143 AREILRIRHQLNGIYADKTGQTIAKIEKDMDRDFFMSAEEAKEYGLIDRVIEERTSI 199


>gi|87302740|ref|ZP_01085551.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           WH 5701]
 gi|87282623|gb|EAQ74581.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           WH 5701]
          Length = 196

 Score =  204 bits (519), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 96/191 (50%), Positives = 135/191 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+E + RGER++DIYSRLL+ERI+F+   +    A  + AQLLFLEAE+P+K+I L
Sbjct: 1   MIPIVIEDSGRGERAFDIYSRLLRERIIFLGEPVTAESANRVVAQLLFLEAEDPEKDIFL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I+DTMQ IKP + T C+G AASMG+ LL+AG KG R +L ++RI++
Sbjct: 61  YINSPGGSVYDGLGIFDTMQHIKPDVQTVCVGLAASMGAFLLTAGAKGKRSSLHHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A +I+ +K +LN       G+  + ++   DRD  MS +EA  
Sbjct: 121 HQPLGGARGQASDIRIQADEILYLKDKLNRELSDRTGQPLDRIQIDTDRDFFMSPAEAVS 180

Query: 198 WGVVDKVLMSR 208
           +G++DKV+  R
Sbjct: 181 YGLIDKVIEKR 191


>gi|22537725|ref|NP_688576.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           agalactiae 2603V/R]
 gi|25011674|ref|NP_736069.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           agalactiae NEM316]
 gi|76787269|ref|YP_330203.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           agalactiae A909]
 gi|76799155|ref|ZP_00781338.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           agalactiae 18RS21]
 gi|77407096|ref|ZP_00784096.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           agalactiae H36B]
 gi|77411373|ref|ZP_00787720.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           agalactiae CJB111]
 gi|60389783|sp|Q8DYA5|CLPP_STRA5 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|60389787|sp|Q8E3X0|CLPP_STRA3 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|109878422|sp|Q3JZV0|CLPP_STRA1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|22534615|gb|AAN00449.1|AE014264_4 ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           agalactiae 2603V/R]
 gi|22091680|emb|CAC88188.1| ClpP serine protease [Streptococcus agalactiae]
 gi|24413214|emb|CAD47293.1| ATP-dependent CLP protease proteolytic subunit [Streptococcus
           agalactiae NEM316]
 gi|76562326|gb|ABA44910.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           agalactiae A909]
 gi|76585485|gb|EAO62060.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           agalactiae 18RS21]
 gi|77162546|gb|EAO73510.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           agalactiae CJB111]
 gi|77174291|gb|EAO77160.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           agalactiae H36B]
          Length = 196

 Score =  204 bits (519), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 97/190 (51%), Positives = 136/190 (71%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TGQ+ED+MA  I AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGQVEDNMANSIIAQLLFLDAQDNTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q SD+   A+ ++K +  L +I   N G++ E+V    +RD  MSA E 
Sbjct: 121 HQPMGGTGGGTQQSDMAIAAEHLLKTRHTLEKILADNSGQSIEKVHDDAERDRWMSAQET 180

Query: 196 CDWGVVDKVL 205
            D+G +D ++
Sbjct: 181 LDYGFIDAIM 190


>gi|317131949|ref|YP_004091263.1| Endopeptidase Clp [Ethanoligenens harbinense YUAN-3]
 gi|315469928|gb|ADU26532.1| Endopeptidase Clp [Ethanoligenens harbinense YUAN-3]
          Length = 196

 Score =  204 bits (519), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 100/194 (51%), Positives = 134/194 (69%), Gaps = 2/194 (1%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            L+P+V+EQTN GERSYDI+SRLL +RIV +   +    A+LI AQ+LFLE+ +  K+I 
Sbjct: 3   NLIPVVIEQTNHGERSYDIFSRLLNDRIVMLNEPVSSESASLIVAQMLFLESADCDKDIQ 62

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            YINSPGG VT   AI DTM +IK  +ST C+G AAS  SLLL AG KG RFAL N+ +L
Sbjct: 63  FYINSPGGSVTDAFAILDTMNYIKCDVSTICIGMAASAASLLLVAGTKGKRFALCNSEVL 122

Query: 137 LHQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           +HQP  SGG  GQA++I+ H+  + K K++LN I+    G+  E +E  ++RDH M+A  
Sbjct: 123 IHQPSISGGLQGQATEIKIHSDWMDKTKQKLNRIFSDLTGQPLETIEHDMERDHYMTAEG 182

Query: 195 ACDWGVVDKVLMSR 208
           A D+G+VD +L  R
Sbjct: 183 AKDYGIVDDILTHR 196


>gi|227497466|ref|ZP_03927695.1| endopeptidase Clp [Actinomyces urogenitalis DSM 15434]
 gi|226833040|gb|EEH65423.1| endopeptidase Clp [Actinomyces urogenitalis DSM 15434]
          Length = 205

 Score =  204 bits (519), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 101/200 (50%), Positives = 133/200 (66%), Gaps = 1/200 (0%)

Query: 18  LVPMVVEQTNRGERSYD-IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           + PM  +    G    D IY+RLLKERI+++  ++ D  A  ICAQ+L L AE+P+++I 
Sbjct: 5   IAPMAADSHGGGLGLTDSIYNRLLKERIIWLGSEVRDDNANAICAQMLLLAAEDPERDIY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGMAIYDTMQ I+P + T   G AASMG  LLSAG KG R+  P+AR+L
Sbjct: 65  LYINSPGGSVTAGMAIYDTMQLIQPDVVTVATGMAASMGQHLLSAGAKGKRYITPHARVL 124

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  G A+DI  +A  I+K+K  L EI   N G T EE+    DRDH  SA EA 
Sbjct: 125 MHQPSGGAGGSATDIRINADLIIKMKHELAEITADNTGHTVEEIIADSDRDHWFSAQEAL 184

Query: 197 DWGVVDKVLMSRIDIEEKSK 216
           ++G VD ++ S  +I++  +
Sbjct: 185 EYGFVDHIISSSREIQQNGE 204


>gi|126696140|ref|YP_001091026.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus str. MIT 9301]
 gi|126543183|gb|ABO17425.1| Clp protease subunit [Prochlorococcus marinus str. MIT 9301]
          Length = 195

 Score =  204 bits (519), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 96/188 (51%), Positives = 136/188 (72%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+E++   ER +DIYSRLL+ERI+F+  Q+    A  I AQLLFLEAE+P+K+I +
Sbjct: 1   MIPLVLEESGGSERVFDIYSRLLRERIIFLGEQVTSETANRIVAQLLFLEAEDPEKDIYM 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I+DTMQ +KP I T C+G AASMG+ LL+AG +G R +L ++RI++
Sbjct: 61  YINSPGGSVYDGLGIFDTMQHVKPDIHTVCVGLAASMGAFLLAAGTQGKRSSLRHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A +I+ +K RLN    +  GK Y+ +++  DRD  MS +EA +
Sbjct: 121 HQPLGGARGQASDIRIQADEILFLKERLNTELSERTGKDYDTIKEDTDRDFYMSPNEAVE 180

Query: 198 WGVVDKVL 205
           +G++D VL
Sbjct: 181 YGLIDLVL 188


>gi|225680955|gb|EEH19239.1| ATP-dependent Clp protease proteolytic subunit [Paracoccidioides
           brasiliensis Pb03]
          Length = 235

 Score =  204 bits (519), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 93/170 (54%), Positives = 133/170 (78%), Gaps = 2/170 (1%)

Query: 42  ERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP 101
           ERIV + G++++ ++  I AQLLFLEA+NP+K I LYINSPGG VTAG+A+YDTM +I  
Sbjct: 45  ERIVCLNGEVDETLSASIVAQLLFLEADNPEKPIHLYINSPGGSVTAGLAVYDTMTYISA 104

Query: 102 PISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKI 161
           P+ST C+GQAASMGSLLL  G  G RF LP++ +++HQPSGG+ GQA+DI  HA++I+++
Sbjct: 105 PVSTICVGQAASMGSLLLCGGHPGKRFCLPHSSVMVHQPSGGYFGQATDIAIHAKEILRV 164

Query: 162 KRRLNEIYVKNCGK--TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           +R+LNEIY ++  K  + +E+EK ++RD+ M A EA + G+VD++L  RI
Sbjct: 165 RRQLNEIYKRHLKKEMSLDEIEKWMERDYFMGAKEALEMGIVDEILDRRI 214


>gi|254423169|ref|ZP_05036887.1| Clp protease [Synechococcus sp. PCC 7335]
 gi|196190658|gb|EDX85622.1| Clp protease [Synechococcus sp. PCC 7335]
          Length = 200

 Score =  204 bits (518), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 97/181 (53%), Positives = 135/181 (74%), Gaps = 1/181 (0%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           E+   IY RL +ERI+F+T +++D +A  I A +L+L++E+  K I LYINSPGG VTAG
Sbjct: 18  EQWISIYERLFRERIIFLTEEVDDGIANAIVAYMLYLDSEDSTKPIYLYINSPGGSVTAG 77

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS-GQA 148
           MAIYDTMQ+IK  + T CMG AASMG+ LL+AG KG R ALP++RI++HQPSGG    QA
Sbjct: 78  MAIYDTMQYIKSEVVTICMGLAASMGAFLLNAGTKGKRLALPHSRIMIHQPSGGVGRRQA 137

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           +DIE  A  IV+++R LNE+   + G+T EE+E+  DRD+ MSA EA ++G++D+V+  R
Sbjct: 138 TDIEIEAVRIVQVRRELNELMAAHSGRTVEEIERDSDRDNFMSAEEAKEYGLIDRVIEER 197

Query: 209 I 209
           +
Sbjct: 198 L 198


>gi|71902983|ref|YP_279786.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes MGAS6180]
 gi|110816467|sp|Q48V25|CLPP_STRPM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|71802078|gb|AAX71431.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes MGAS6180]
          Length = 196

 Score =  204 bits (518), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 95/190 (50%), Positives = 139/190 (73%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDNTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGTKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K + RL +I  +N GKT +++ K  +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRHRLEKILAQNAGKTIKQIHKDAERDYWMSAEET 180

Query: 196 CDWGVVDKVL 205
             +G +D+++
Sbjct: 181 LTYGFIDEIM 190


>gi|187251176|ref|YP_001875658.1| endopeptidase Clp [Elusimicrobium minutum Pei191]
 gi|259585952|sp|B2KCS5|CLPP_ELUMP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|186971336|gb|ACC98321.1| Endopeptidase Clp [Elusimicrobium minutum Pei191]
          Length = 195

 Score =  204 bits (518), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 101/194 (52%), Positives = 146/194 (75%), Gaps = 10/194 (5%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFV---TGQIEDHMATLICAQLLFLEAENPQKE 74
           ++P ++E+ N G   YDI+SRLLK+RI+FV    G+++   AT+I AQLL+L+AE+ ++E
Sbjct: 2   IIPTIIEK-NVG---YDIFSRLLKDRIIFVGGREGEVDTASATMIIAQLLYLDAEDSERE 57

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I+LYINSPGG+VTAG+AIYDTMQFIK PI+T CMGQA S G++LL+AG KG R+ALP+AR
Sbjct: 58  INLYINSPGGLVTAGLAIYDTMQFIKAPITTICMGQAMSFGAVLLAAGSKGKRYALPHAR 117

Query: 135 ILLHQP---SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           I++HQP    GG SGQ +DIE  + ++ K K  L +I   + G+  E++ +  +R++ MS
Sbjct: 118 IMIHQPLIWGGGISGQVTDIEIESNELRKNKEHLLDILAHHTGQDKEKIRQDSERNYYMS 177

Query: 192 ASEACDWGVVDKVL 205
           A EA  +G++D+VL
Sbjct: 178 AQEAKAYGLIDEVL 191


>gi|195978714|ref|YP_002123958.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
 gi|195975419|gb|ACG62945.1| ATP-dependent Clp protease proteolytic subunit ClpP [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
          Length = 207

 Score =  204 bits (518), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 98/199 (49%), Positives = 143/199 (71%), Gaps = 3/199 (1%)

Query: 10  DSEDVF-LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           DS D   + ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A
Sbjct: 3   DSHDRLEIFMIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDA 62

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ++  K+I LY+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF
Sbjct: 63  QDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRF 122

Query: 129 ALPNARILLHQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
            LPNA  ++HQP    G   Q +D+   A+ ++K + RL +I  +N GKT +++ K  +R
Sbjct: 123 MLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRHRLEKILAQNAGKTIKQIHKDAER 182

Query: 187 DHIMSASEACDWGVVDKVL 205
           D+ MSA E   +G +D+++
Sbjct: 183 DYWMSAEETLAYGFIDEIM 201


>gi|67921362|ref|ZP_00514880.1| Peptidase S14, ClpP [Crocosphaera watsonii WH 8501]
 gi|67856474|gb|EAM51715.1| Peptidase S14, ClpP [Crocosphaera watsonii WH 8501]
          Length = 200

 Score =  204 bits (518), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 101/188 (53%), Positives = 138/188 (73%), Gaps = 8/188 (4%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ER  DIY+RL +ERI+F+  ++ D +A  I A LL+L++++P K I LYINSPGG VTAG
Sbjct: 18  ERWIDIYTRLGQERIIFLGQEVSDGIANRIVALLLYLDSDDPNKPIYLYINSPGGSVTAG 77

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG--Q 147
           MAIYDTMQ+IK  + T C+G AASMGS LL+AG  G R ALP+ARI++HQP GG  G  Q
Sbjct: 78  MAIYDTMQYIKSEVITICVGLAASMGSFLLAAGTPGKRLALPHARIMIHQPLGGTGGRRQ 137

Query: 148 ASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+DIE  A +I++I+ +LN++    CG++ E++EK  DRD+ MSA EA ++G++DKV   
Sbjct: 138 ATDIEIEANEILRIRAQLNQLLADQCGQSLEKIEKDTDRDYFMSAEEAKEYGLIDKV--- 194

Query: 208 RIDIEEKS 215
              I+EKS
Sbjct: 195 ---IDEKS 199


>gi|289641547|ref|ZP_06473709.1| Endopeptidase Clp [Frankia symbiont of Datisca glomerata]
 gi|289508642|gb|EFD29579.1| Endopeptidase Clp [Frankia symbiont of Datisca glomerata]
          Length = 223

 Score =  204 bits (518), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 100/191 (52%), Positives = 147/191 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+E+T+RGE + D Y +LL+ERI+F+  QI+D  A  + AQLLFLE+E+P ++IS+
Sbjct: 20  VLPRVIERTSRGEIALDPYEKLLRERIIFLGVQIDDTSANDVMAQLLFLESEDPDRDISI 79

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQF++P I T CMGQAAS  S+LL+AG  G RF L N+RILL
Sbjct: 80  YINSPGGSFTALTAIYDTMQFVRPDIQTICMGQAASAASVLLAAGTPGKRFGLENSRILL 139

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSG   GQ+SD+E  A++I++++  L  IY ++ G++ EE+ + ++RD I+SA+EA +
Sbjct: 140 HQPSGQGEGQSSDLEIQAREILRMRALLERIYARHTGRSEEEIRRDIERDKILSAAEAKE 199

Query: 198 WGVVDKVLMSR 208
           +G++D+V+ +R
Sbjct: 200 YGLIDEVISTR 210


>gi|51891496|ref|YP_074187.1| ATP-dependent Clp protease proteolytic subunit [Symbiobacterium
           thermophilum IAM 14863]
 gi|67460470|sp|Q67SK0|CLPP1_SYMTH RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|51855185|dbj|BAD39343.1| ATP-dependent Clp protease proteolytic subunit [Symbiobacterium
           thermophilum IAM 14863]
          Length = 202

 Score =  204 bits (518), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 107/192 (55%), Positives = 144/192 (75%), Gaps = 2/192 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P V+EQTNRGERSYDIYSRLLK+RIVF+   I+D +A ++ AQLLFLE+E+P K ++L
Sbjct: 4   LIPYVIEQTNRGERSYDIYSRLLKDRIVFLGTPIDDQVANVVIAQLLFLESEDPDKPVNL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG+ IYD MQ IK P++T  +G AASM +LLL+AG  G R+ALPNAR+++
Sbjct: 64  YINSPGGSVSAGLGIYDAMQHIKSPVNTTVVGMAASMAALLLAAG-TGKRYALPNARVMI 122

Query: 138 HQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP   G  GQ +DIE  A++ VK K+ + EI  K+ G++ E +    +RD  MSA EA 
Sbjct: 123 HQPHLSGVGGQVTDIEITAREAVKTKQLMAEILAKHSGQSVERILADTERDRWMSAQEAV 182

Query: 197 DWGVVDKVLMSR 208
           ++G+VD+VL  R
Sbjct: 183 EYGLVDEVLHPR 194


>gi|225867968|ref|YP_002743916.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus equi
           subsp. zooepidemicus]
 gi|225871117|ref|YP_002747064.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus equi
           subsp. equi 4047]
 gi|254763801|sp|C0M7M8|CLPP_STRE4 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|259585965|sp|C0MGT5|CLPP_STRS7 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|225700521|emb|CAW94984.1| putative ATP-dependent Clp protease proteolytic subunit
           [Streptococcus equi subsp. equi 4047]
 gi|225701244|emb|CAW98203.1| putative ATP-dependent Clp protease proteolytic subunit
           [Streptococcus equi subsp. zooepidemicus]
          Length = 196

 Score =  203 bits (517), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 95/190 (50%), Positives = 139/190 (73%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDNTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K + RL +I  +N GKT +++ K  +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRHRLEKILAQNAGKTIKQIHKDAERDYWMSAEET 180

Query: 196 CDWGVVDKVL 205
             +G +D+++
Sbjct: 181 LAYGFIDEIM 190


>gi|15674537|ref|NP_268711.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes M1 GAS]
 gi|19745547|ref|NP_606683.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes MGAS8232]
 gi|21909823|ref|NP_664091.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes MGAS315]
 gi|28896484|ref|NP_802834.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes SSI-1]
 gi|50913700|ref|YP_059672.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes MGAS10394]
 gi|71910142|ref|YP_281692.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes MGAS5005]
 gi|94987959|ref|YP_596060.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes MGAS9429]
 gi|94989833|ref|YP_597933.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes MGAS10270]
 gi|94991844|ref|YP_599943.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes MGAS2096]
 gi|94993720|ref|YP_601818.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes MGAS10750]
 gi|139474337|ref|YP_001129053.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes str. Manfredo]
 gi|209558883|ref|YP_002285355.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes NZ131]
 gi|251781853|ref|YP_002996155.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|306827931|ref|ZP_07461198.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes ATCC 10782]
 gi|56748646|sp|Q5XDM4|CLPP_STRP6 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|56749808|sp|P69884|CLPP_STRP1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|56749809|sp|P69885|CLPP_STRP3 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|56749810|sp|P69886|CLPP_STRP8 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|116243170|sp|Q1JDA9|CLPP_STRPB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|116243171|sp|Q1JN83|CLPP_STRPC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|116243172|sp|Q1JID4|CLPP_STRPD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|116243173|sp|Q1J887|CLPP_STRPF RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166214714|sp|A2RG72|CLPP_STRPG RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706550|sp|B5XJZ8|CLPP_STRPZ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|13621642|gb|AAK33432.1| putative ATP-dependent protease proteolytic subunit [Streptococcus
           pyogenes M1 GAS]
 gi|19747668|gb|AAL97182.1| putative ATP-dependent protease proteolytic subunit [Streptococcus
           pyogenes MGAS8232]
 gi|21904009|gb|AAM78894.1| putative ATP-dependent Clp protease proteolytic subunit
           [Streptococcus pyogenes MGAS315]
 gi|28811738|dbj|BAC64667.1| putative ATP-dependent protease proteolytic subunit [Streptococcus
           pyogenes SSI-1]
 gi|50902774|gb|AAT86489.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes MGAS10394]
 gi|71852924|gb|AAZ50947.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes MGAS5005]
 gi|94541467|gb|ABF31516.1| ATP-dependent endopeptidase clp proteolytic subunit [Streptococcus
           pyogenes MGAS9429]
 gi|94543341|gb|ABF33389.1| ATP-dependent endopeptidase clp proteolytic subunit clpP
           [Streptococcus pyogenes MGAS10270]
 gi|94545352|gb|ABF35399.1| ATP-dependent endopeptidase clp proteolytic subunit clpP
           [Streptococcus pyogenes MGAS2096]
 gi|94547228|gb|ABF37274.1| ATP-dependent endopeptidase clp proteolytic subunit clpP
           [Streptococcus pyogenes MGAS10750]
 gi|134272584|emb|CAM30851.1| putative ATP-dependent Clp protease proteolytic subunit
           [Streptococcus pyogenes str. Manfredo]
 gi|209540084|gb|ACI60660.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes NZ131]
 gi|242390482|dbj|BAH80941.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|304429850|gb|EFM32892.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes ATCC 10782]
 gi|322411198|gb|EFY02106.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
 gi|323126667|gb|ADX23964.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 196

 Score =  203 bits (517), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 95/190 (50%), Positives = 139/190 (73%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDNTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGTKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K + RL +I  +N GKT +++ K  +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRHRLEKILAQNAGKTIKQIHKDAERDYWMSAEET 180

Query: 196 CDWGVVDKVL 205
             +G +D+++
Sbjct: 181 LAYGFIDEIM 190


>gi|302556967|ref|ZP_07309309.1| Clp protease [Streptomyces griseoflavus Tu4000]
 gi|302474585|gb|EFL37678.1| Clp protease [Streptomyces griseoflavus Tu4000]
          Length = 200

 Score =  203 bits (517), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 96/192 (50%), Positives = 138/192 (71%), Gaps = 1/192 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVE+T RGERSYD++SRLL ERIVF+  +I+D +A ++ AQLL LE+  P+ EI+LY
Sbjct: 6   IPNVVERTPRGERSYDVFSRLLSERIVFLGTEIDDGVANVVIAQLLHLESAAPESEIALY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  T+ MAIYDTM F++ PISTFC+GQAAS  ++LL+ G+ G RF L +AR+LL 
Sbjct: 66  INSPGGSFTSLMAIYDTMTFVQAPISTFCVGQAASTAAVLLAGGDPGRRFVLEHARVLLG 125

Query: 139 QP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP SGG  G ASD+   A+++V+I+ ++ E+  ++       +   +DRD + +A EA  
Sbjct: 126 QPASGGTRGTASDLALRAREMVRIRSQVEEVLARHTHHDPATLRADMDRDKVFTAREAVS 185

Query: 198 WGVVDKVLMSRI 209
           +G+ D+VL  R+
Sbjct: 186 YGLADEVLARRL 197


>gi|86130754|ref|ZP_01049353.1| ATP-dependent Clp protease proteolytic subunit [Dokdonia
           donghaensis MED134]
 gi|85818165|gb|EAQ39325.1| ATP-dependent Clp protease proteolytic subunit [Dokdonia
           donghaensis MED134]
          Length = 224

 Score =  203 bits (517), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 92/189 (48%), Positives = 137/189 (72%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GL P ++E+       +D++SRL+ +RI+F+   I D +A ++ AQLLFLE+ +  K+I 
Sbjct: 33  GLTPNIIEERQMNIAIFDVFSRLMMDRIIFLGTGINDQVANIVQAQLLFLESTDANKDIQ 92

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG V AG+ IYDTMQFIKP ++T C G AASMG++LL AGEKG R  LP++R++
Sbjct: 93  IYINSPGGSVYAGLGIYDTMQFIKPDVATICTGMAASMGAVLLCAGEKGKRSGLPHSRVM 152

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQASDIE  A++I+ +K+ L +I  K+ G+ Y++V    DRD+ M A +A 
Sbjct: 153 IHQPMGGAQGQASDIEITAKEILTLKKELYDIIAKHSGQDYDKVYNDSDRDYWMKADKAL 212

Query: 197 DWGVVDKVL 205
           ++G++D++L
Sbjct: 213 EYGMIDEIL 221


>gi|322385045|ref|ZP_08058695.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           cristatus ATCC 51100]
 gi|321270955|gb|EFX53865.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           cristatus ATCC 51100]
          Length = 202

 Score =  203 bits (517), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 96/196 (48%), Positives = 141/196 (71%), Gaps = 4/196 (2%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E +F+  +P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A++ 
Sbjct: 3   EKIFM--IPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDS 60

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+I LY+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LP
Sbjct: 61  TKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGAKGKRFMLP 120

Query: 132 NARILLHQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           NA  ++HQP    G   Q +D+   A+ ++K +R L +I   N GK+ E++    +RD+ 
Sbjct: 121 NAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRRTLEQILADNSGKSVEQIHADAERDYW 180

Query: 190 MSASEACDWGVVDKVL 205
           MSA E  ++G +D+++
Sbjct: 181 MSAQETLEYGFIDEIM 196


>gi|159903385|ref|YP_001550729.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus str. MIT 9211]
 gi|159888561|gb|ABX08775.1| Clp protease subunit [Prochlorococcus marinus str. MIT 9211]
          Length = 196

 Score =  203 bits (516), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 94/191 (49%), Positives = 135/191 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+E++ RGER++DIYSRLL+ERI+F+   + +  A  I AQLLFLEAE+P+K+I L
Sbjct: 1   MIPIVIEESGRGERAFDIYSRLLRERIIFLGEPVTNDSANRIVAQLLFLEAEDPEKDIFL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I+DT++ +KP + T C+G AASMG+ LL AG KG R +L ++RI++
Sbjct: 61  YINSPGGSVYDGLGIFDTIEHVKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLKHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A +I+ +K RLN    +  G+  E + +  DRD  MS  EA +
Sbjct: 121 HQPLGGARGQASDIRIQADEILFLKDRLNNELAERTGQPIERISQDTDRDFYMSPDEALE 180

Query: 198 WGVVDKVLMSR 208
           +G++D +   R
Sbjct: 181 YGIIDNIFNKR 191


>gi|123966075|ref|YP_001011156.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus str. MIT 9515]
 gi|123200441|gb|ABM72049.1| Clp protease subunit [Prochlorococcus marinus str. MIT 9515]
          Length = 196

 Score =  203 bits (516), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 97/188 (51%), Positives = 134/188 (71%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+E++   ER +DIYSRLL+ERI+F+  Q+    A  I AQLLFLEAE+P+K+I +
Sbjct: 1   MIPLVLEESGGSERVFDIYSRLLRERIIFLGEQVTSDTANRIVAQLLFLEAEDPEKDIYM 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I+DTMQ +KP I T C+G AASMG+ LL+AG KG R +L ++RI++
Sbjct: 61  YINSPGGSVYDGLGIFDTMQHVKPDIHTVCVGLAASMGAFLLAAGTKGKRSSLRHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A +I+ +K RLN    +  GK  E +++  DRD  MS  EA +
Sbjct: 121 HQPLGGARGQASDIRIQADEILYLKERLNSELSERTGKNLETIKEDTDRDFYMSPLEAVE 180

Query: 198 WGVVDKVL 205
           +G++D VL
Sbjct: 181 YGLIDLVL 188


>gi|322391649|ref|ZP_08065117.1| ATP-dependent Clp protease, protease subunit [Streptococcus peroris
           ATCC 700780]
 gi|321145460|gb|EFX40853.1| ATP-dependent Clp protease, protease subunit [Streptococcus peroris
           ATCC 700780]
          Length = 196

 Score =  203 bits (516), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 94/190 (49%), Positives = 138/190 (72%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q SD+   A+ ++K ++ L +I   N GK+ E++    +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQSDMAIAAEHLLKTRKNLEQILADNSGKSVEQIHVDAERDYWMSAQET 180

Query: 196 CDWGVVDKVL 205
            ++G +D+++
Sbjct: 181 LEYGFIDEIM 190


>gi|260906246|ref|ZP_05914568.1| Endopeptidase Clp [Brevibacterium linens BL2]
          Length = 198

 Score =  203 bits (516), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 93/180 (51%), Positives = 130/180 (72%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I++RLLKERI+++  ++ D  A  ICAQ++ L AE+P  +ISLYINSPGG VTAGMAIYD
Sbjct: 19  IFNRLLKERIIWLGSEVRDSNANAICAQMMLLAAEDPDADISLYINSPGGSVTAGMAIYD 78

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ+IKP +ST  MG AASMG  LLS+G  G R+A P+ARIL+HQP GG  G A+DI+  
Sbjct: 79  TMQYIKPDVSTVAMGMAASMGQFLLSSGAPGKRYATPHARILMHQPLGGIGGTATDIKIQ 138

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           A+ I+ +K+++ E+  +  GKT E++ K  DRDH  +A EA ++G +DK++    D+ + 
Sbjct: 139 AELILHMKKQMAELTAEQTGKTLEQILKDNDRDHWFTAEEALEYGFIDKMVTRSSDVTDN 198


>gi|329946414|ref|ZP_08293981.1| endopeptidase Clp [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328527390|gb|EGF54388.1| endopeptidase Clp [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 212

 Score =  203 bits (516), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 96/181 (53%), Positives = 130/181 (71%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IY+RLLKERI+++  ++ D  A  ICAQ+L L AE+P+++I LYINSPGG VTAGMAIYD
Sbjct: 29  IYNRLLKERIIWLGSEVRDDNANAICAQMLLLAAEDPERDIYLYINSPGGSVTAGMAIYD 88

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ+++P ++T   G AASMG  LLSAG KG R+  P+AR+L+HQPSGG  G A+DI  +
Sbjct: 89  TMQYVQPDVATVATGLAASMGQHLLSAGAKGKRYLTPHARVLMHQPSGGAGGSATDIRIN 148

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           A  I+K+K+ L EI   N G T EE+    DRDH  SA EA ++G VD ++ S  +I ++
Sbjct: 149 ADLIIKMKQELAEITAANTGHTVEEIIADSDRDHWFSAQEALEYGFVDHIVRSSREIGKQ 208

Query: 215 S 215
           +
Sbjct: 209 N 209


>gi|326334771|ref|ZP_08200977.1| ATP-dependent Clp protease, protease subunit [Capnocytophaga sp.
           oral taxon 338 str. F0234]
 gi|325693084|gb|EGD35017.1| ATP-dependent Clp protease, protease subunit [Capnocytophaga sp.
           oral taxon 338 str. F0234]
          Length = 220

 Score =  203 bits (516), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 98/202 (48%), Positives = 142/202 (70%)

Query: 4   EGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQL 63
           +G +    + +   + P ++E+        D++SRL+ +RI+F+   +   +A +I AQL
Sbjct: 15  QGVSSTYYDAIVNSMTPYIMEERQLNVTQMDVFSRLMMDRIIFLGTDVNSQVANIIQAQL 74

Query: 64  LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           LFLE+ + QK+I +YINSPGG V +G+ IYDTMQFIKP ++T C G AASM ++LL AG 
Sbjct: 75  LFLESLDAQKDIQIYINSPGGEVYSGLGIYDTMQFIKPQVATICTGLAASMAAVLLCAGA 134

Query: 124 KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
           KG R ALP++RI++HQP GG  GQASDIE +A++I+KIK  L+ I  K+ GKT +EV  +
Sbjct: 135 KGKRSALPHSRIMIHQPLGGAQGQASDIEINAREILKIKEELSLIIAKHSGKTLQEVIHS 194

Query: 184 LDRDHIMSASEACDWGVVDKVL 205
            DRD+ M ASEA D+G++D+VL
Sbjct: 195 SDRDYWMIASEAKDFGMIDEVL 216


>gi|87124411|ref|ZP_01080260.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           RS9917]
 gi|86167983|gb|EAQ69241.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           RS9917]
          Length = 196

 Score =  202 bits (515), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 97/191 (50%), Positives = 134/191 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+E++ RGER++DIYSRLL+ERIVF+   +    A  I AQLLFLEAE+P K+I L
Sbjct: 1   MIPIVIEESGRGERAFDIYSRLLRERIVFLGEPVTSDSANRIVAQLLFLEAEDPDKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I+DTMQ IKP + T C+G AASMG+ LL AG KG R +L ++RI++
Sbjct: 61  YINSPGGSVYDGLGIFDTMQHIKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A +I+ +K +LN    +  G+  E+++   DRD  MS  +A  
Sbjct: 121 HQPLGGARGQASDIRIQADEILFLKDKLNRELAERSGQPLEKIQVDTDRDFFMSPQDAVS 180

Query: 198 WGVVDKVLMSR 208
           +G++D V+  R
Sbjct: 181 YGLIDSVIDRR 191


>gi|325066963|ref|ZP_08125636.1| Endopeptidase Clp [Actinomyces oris K20]
 gi|326771855|ref|ZP_08231140.1| Clp protease [Actinomyces viscosus C505]
 gi|326637988|gb|EGE38889.1| Clp protease [Actinomyces viscosus C505]
          Length = 212

 Score =  202 bits (515), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 96/181 (53%), Positives = 130/181 (71%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IY+RLLKERI+++  ++ D  A  ICAQ+L L AE+P+++I LYINSPGG VTAGMAIYD
Sbjct: 29  IYNRLLKERIIWLGSEVRDDNANAICAQMLLLAAEDPERDIYLYINSPGGSVTAGMAIYD 88

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ+++P ++T   G AASMG  LLSAG KG R+  P+AR+L+HQPSGG  G A+DI  +
Sbjct: 89  TMQYVQPDVATVATGLAASMGQHLLSAGAKGKRYLTPHARVLMHQPSGGAGGSATDIRIN 148

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           A  I+K+K+ L EI   N G T EE+    DRDH  SA EA ++G VD ++ S  +I ++
Sbjct: 149 ADLIIKMKQELAEITAANTGHTVEEIIADSDRDHWFSAQEALEYGFVDHIVRSSREIGKQ 208

Query: 215 S 215
           +
Sbjct: 209 N 209


>gi|33861299|ref|NP_892860.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
 gi|67460516|sp|Q7V1W0|CLPP1_PROMP RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|33633876|emb|CAE19201.1| Clp protease subunit [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
          Length = 196

 Score =  202 bits (515), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 97/188 (51%), Positives = 133/188 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+E++   ER +DIYSRLL+ERI+F+  Q+    A  I AQLLFLEAE+P+K+I +
Sbjct: 1   MIPLVLEESGGSERVFDIYSRLLRERIIFLGEQVTSDTANRIVAQLLFLEAEDPEKDIYM 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I+DTMQ +KP I T C+G AASMG+ LL+AG KG R +L ++RI++
Sbjct: 61  YINSPGGSVYDGLGIFDTMQHVKPDIHTVCVGLAASMGAFLLAAGTKGKRSSLRHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A +I+ +K RLN    +  GK  E ++   DRD  MS  EA +
Sbjct: 121 HQPLGGARGQASDIRIQADEILYLKERLNTELSERTGKELETIKGDTDRDFYMSPQEAVE 180

Query: 198 WGVVDKVL 205
           +G++D VL
Sbjct: 181 YGLIDLVL 188


>gi|56751582|ref|YP_172283.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus
           elongatus PCC 6301]
 gi|81301346|ref|YP_401554.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus
           elongatus PCC 7942]
 gi|18203213|sp|Q9L4P3|CLPP3_SYNE7 RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
           AltName: Full=Endopeptidase Clp 3
 gi|67460443|sp|Q5N1Q7|CLPP2_SYNP6 RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|7106112|emb|CAB75988.1| ATP-dependent Clp protease third proteolytic subunit [Synechococcus
           elongatus PCC 7942]
 gi|56686541|dbj|BAD79763.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus
           elongatus PCC 6301]
 gi|81170227|gb|ABB58567.1| ATP-dependent Clp protease proteolytic subunit ClpP [Synechococcus
           elongatus PCC 7942]
          Length = 199

 Score =  202 bits (515), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 99/180 (55%), Positives = 133/180 (73%), Gaps = 1/180 (0%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ER  DIY+RL  ERI+F+  ++ D +A  I AQLL+L++E+  K I LYINSPGG VTAG
Sbjct: 18  ERWIDIYNRLAMERIIFLGQEVTDGLANSIVAQLLYLDSEDSSKPIYLYINSPGGSVTAG 77

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS-GQA 148
           MAIYDTMQ+IK P+ T C+G AASMG+ LL AG KG R ALP++RI++HQP GG    QA
Sbjct: 78  MAIYDTMQYIKSPVITICLGLAASMGAFLLCAGSKGKRLALPHSRIMIHQPLGGTGRRQA 137

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           SDIE  A++I++IK+ LN+I     G+  E++EK  DRD+ MSA EA ++G++D+V+  R
Sbjct: 138 SDIEIEAKEILRIKKLLNQIMADRTGQPLEKIEKDTDRDYFMSAEEAREYGLIDQVIAER 197


>gi|297153499|gb|ADI03211.1| ATP-dependent Clp protease proteolytic subunit 2 [Streptomyces
           bingchenggensis BCW-1]
          Length = 200

 Score =  202 bits (515), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 93/192 (48%), Positives = 140/192 (72%), Gaps = 1/192 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP V+E+T +GERSYD++SRLL ERI+F+  +I+D +A ++ AQLL LE+ NP++EIS+Y
Sbjct: 6   VPYVIERTAQGERSYDVFSRLLNERIIFLGTEIDDGVANVVIAQLLHLESANPEREISIY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           +NSPGG  T+ MAIYDTM F++ PISTFC+GQAAS  ++LL+ G+ G RF L +AR+LL 
Sbjct: 66  LNSPGGSFTSLMAIYDTMTFVQAPISTFCVGQAASTAAVLLAGGDPGRRFVLQHARVLLG 125

Query: 139 QP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP SGG  G  SD+   A+++V+I+ ++ E+  ++       +   +DRD +++A EA  
Sbjct: 126 QPASGGRQGTVSDLSLAAKEMVRIRSQVEEVLSRHTHHDVATLRADMDRDKVLTAEEAVA 185

Query: 198 WGVVDKVLMSRI 209
           +G+ D+VL  R+
Sbjct: 186 YGLADEVLSRRL 197


>gi|254495062|ref|ZP_05107986.1| Clp protease [Polaribacter sp. MED152]
 gi|85819412|gb|EAQ40569.1| Clp protease [Polaribacter sp. MED152]
          Length = 219

 Score =  202 bits (515), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 97/188 (51%), Positives = 135/188 (71%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P ++E+        D++SRL+ +RI+F+   I D +A +I AQLLFLE+ +  K+IS+
Sbjct: 29  LTPYIMEERQMNITQMDVFSRLMMDRIIFLGTGINDQVANIIQAQLLFLESVDANKDISI 88

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+ IYDTMQFIKP ++T C G AASMG++L+ AGEKG R ALP++RI++
Sbjct: 89  YINSPGGGVYAGLGIYDTMQFIKPDVATICTGMAASMGAVLMCAGEKGKRSALPHSRIMI 148

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I+K+K  L  I   + G+T E+V    DRD+ M A EA +
Sbjct: 149 HQPLGGAQGQASDIEITAREILKLKDELYAIIANHSGQTVEKVHNDSDRDYWMKADEAKE 208

Query: 198 WGVVDKVL 205
           +G++D+VL
Sbjct: 209 YGMIDEVL 216


>gi|119512063|ref|ZP_01631157.1| ATP-dependent Clp protease proteolytic subunit [Nodularia spumigena
           CCY9414]
 gi|119463289|gb|EAW44232.1| ATP-dependent Clp protease proteolytic subunit [Nodularia spumigena
           CCY9414]
          Length = 197

 Score =  202 bits (514), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 93/174 (53%), Positives = 134/174 (77%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IY RL +ERI+F+   ++D +A  I A +L+L++++P K+I LYINSPGG+VT+GMAI+D
Sbjct: 23  IYDRLYRERIIFLGRDVDDEIANQIIAVMLYLDSDDPGKDIYLYINSPGGMVTSGMAIFD 82

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ IK  + T C+G AASMGS LL+AG KG R ALP++RI++HQPSGG  GQASDIE  
Sbjct: 83  TMQHIKSDVVTICVGLAASMGSFLLAAGTKGKRMALPHSRIMIHQPSGGTRGQASDIEIE 142

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           A++I++I+ +LN IY +  G+   ++EK +DRD  MSA+EA ++G++D+V+  R
Sbjct: 143 AREILRIRHQLNGIYAEKTGQDISKIEKDMDRDFFMSAAEAKEYGLIDRVIEER 196


>gi|313207344|ref|YP_004046521.1| endopeptidase clp [Riemerella anatipestifer DSM 15868]
 gi|312446660|gb|ADQ83015.1| Endopeptidase Clp [Riemerella anatipestifer DSM 15868]
 gi|315023239|gb|EFT36249.1| ATP-dependent Clp protease proteolytic subunit [Riemerella
           anatipestifer RA-YM]
 gi|325335197|gb|ADZ11471.1| Protease subunit of ATP-dependent Clp proteases [Riemerella
           anatipestifer RA-GD]
          Length = 224

 Score =  202 bits (514), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 92/188 (48%), Positives = 141/188 (75%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P ++E+        D++SRL+ +RI+F+   I+D +A ++ AQLLFLE+ +P K+I +
Sbjct: 34  LTPYIMEERRMNVAQMDVFSRLMMDRIIFLGTGIDDQVANIVTAQLLFLESADPTKDIQI 93

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+ IYDTMQ IKP ++T C G AASMG++LL AGEKG R AL ++R+++
Sbjct: 94  YINSPGGSVYAGLGIYDTMQIIKPDVATICTGMAASMGAVLLVAGEKGKRSALKHSRVMI 153

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  G ASD+E + ++++K+K+ L +I  ++ G++YE VEK+ DRD+ M++ EA +
Sbjct: 154 HQPSGGAQGVASDMEINLREMLKLKKELYDIISEHSGQSYEWVEKSSDRDYWMTSEEAKE 213

Query: 198 WGVVDKVL 205
           +G++D+VL
Sbjct: 214 FGMIDEVL 221


>gi|306825611|ref|ZP_07458950.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
 gi|304431972|gb|EFM34949.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
          Length = 196

 Score =  202 bits (514), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 94/190 (49%), Positives = 138/190 (72%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K ++ L +I   N GKT E++    +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRKTLEQILADNSGKTVEQIHVDAERDYWMSAQET 180

Query: 196 CDWGVVDKVL 205
            ++G +D+++
Sbjct: 181 LEYGFIDEIM 190


>gi|120434592|ref|YP_860283.1| ATP-dependent Clp protease proteolytic subunit [Gramella forsetii
           KT0803]
 gi|117576742|emb|CAL65211.1| ATP-dependent Clp protease proteolytic subunit [Gramella forsetii
           KT0803]
          Length = 225

 Score =  202 bits (514), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 92/189 (48%), Positives = 137/189 (72%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G+ P ++E+      + D++SRL+ +RI+F+   I + +A ++ AQLLFLE+ +  K+I 
Sbjct: 33  GMTPNIIEERQMNAVAMDVFSRLMMDRIIFLGTGINEQVANIVQAQLLFLESTDASKDIQ 92

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG V AG+ IYDTMQFIKP ++T C G AASMG++LL AGE G R  LP++R++
Sbjct: 93  IYINSPGGSVYAGLGIYDTMQFIKPDVATICTGMAASMGAVLLCAGEDGKRSGLPHSRVM 152

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQASDIE  A++IV +K  L +I  K+ G+TYE+V +  DRD+ M A +A 
Sbjct: 153 IHQPMGGAQGQASDIEITAREIVTLKEELYKIIAKHSGQTYEKVHEDSDRDYWMKAEKAK 212

Query: 197 DWGVVDKVL 205
           ++G++D++L
Sbjct: 213 EYGMIDEIL 221


>gi|167754483|ref|ZP_02426610.1| hypothetical protein ALIPUT_02779 [Alistipes putredinis DSM 17216]
 gi|167659108|gb|EDS03238.1| hypothetical protein ALIPUT_02779 [Alistipes putredinis DSM 17216]
          Length = 221

 Score =  202 bits (514), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 94/189 (49%), Positives = 136/189 (71%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+      + D++SRL+ +RI+F+   I D  A +I AQLLFLE+ +P+K+I +YI
Sbjct: 32  PTIIEERQLNVATMDVFSRLMMDRIIFLGAPIYDDAANIIQAQLLFLESADPEKDIQIYI 91

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VTAG+ IYDTMQ ++P ++T C G AASMG++LL+AG  G R ALP++R+++HQ
Sbjct: 92  NSPGGSVTAGLGIYDTMQLVQPDVATICTGLAASMGAVLLTAGAAGKRSALPHSRVMIHQ 151

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I K K+ L EI   + G   E++EK  DRD+ +SA EA ++G
Sbjct: 152 PLGGAQGQASDIEITAREIRKTKQELYEIIAAHSGAPIEKIEKDADRDYWLSAREAKEYG 211

Query: 200 VVDKVLMSR 208
           ++D+VL  R
Sbjct: 212 LIDEVLTKR 220


>gi|313682639|ref|YP_004060377.1| ATP-dependent clp protease proteolytic subunit clpp [Sulfuricurvum
           kujiense DSM 16994]
 gi|313155499|gb|ADR34177.1| ATP-dependent Clp protease proteolytic subunit ClpP [Sulfuricurvum
           kujiense DSM 16994]
          Length = 198

 Score =  202 bits (513), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 91/188 (48%), Positives = 133/188 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            +P V + + RGER +D++S+LL +R++ +T  I+DHM  +I +QLL+LEA +P + I +
Sbjct: 3   FIPTVKDVSPRGERYFDLFSKLLGDRVIVITEAIDDHMMGVIVSQLLYLEAMDPDEPIHM 62

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YI+SPGG V AG+AI DTM  I  P+ T+ MG  ASM ++L + GEKG R+ LPNA +++
Sbjct: 63  YISSPGGSVMAGLAILDTMNLINAPVHTYAMGLVASMAAVLFTCGEKGHRYMLPNAEVMI 122

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG+SGQASDIE H + I+ +KRRL  I  +  GK+ + +EK  DRD+ M A EA  
Sbjct: 123 HQPLGGYSGQASDIEIHTKHILNLKRRLYVILAEATGKSAKVIEKESDRDNYMEAKEAIA 182

Query: 198 WGVVDKVL 205
           +G+ D++L
Sbjct: 183 FGLADEIL 190


>gi|329937607|ref|ZP_08287126.1| ATP-dependent Clp protease proteolytic subunit 2 [Streptomyces
           griseoaurantiacus M045]
 gi|329303006|gb|EGG46894.1| ATP-dependent Clp protease proteolytic subunit 2 [Streptomyces
           griseoaurantiacus M045]
          Length = 202

 Score =  202 bits (513), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 94/192 (48%), Positives = 139/192 (72%), Gaps = 1/192 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP VVE+T +GERSYD++SRLL ERIVF+  +I+D +A ++ AQLL LE+ NP++EIS+Y
Sbjct: 8   VPYVVERTAQGERSYDVFSRLLSERIVFLGTEIDDGVANVVIAQLLHLESANPEQEISIY 67

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           +NSPGG  T+ MAIYDTM F++ PISTFC+GQAAS  ++LL+ G+ G RF L +AR+LL 
Sbjct: 68  LNSPGGSFTSLMAIYDTMTFVRAPISTFCVGQAASTAAVLLAGGDPGRRFVLEHARVLLG 127

Query: 139 QP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP +GG  G  SD+   A+++V+I+ ++ E+  ++       +   +DRD + +A EA  
Sbjct: 128 QPAAGGAQGTVSDLALRAKEMVRIRAQVEEVLSRHTPHDVATLRADMDRDKVFTAEEAVA 187

Query: 198 WGVVDKVLMSRI 209
           +G+ D+VL  R+
Sbjct: 188 YGLADEVLSRRL 199


>gi|157151545|ref|YP_001450909.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           gordonii str. Challis substr. CH1]
 gi|262283203|ref|ZP_06060970.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus sp.
           2_1_36FAA]
 gi|189082471|sp|A8AYP9|CLPP_STRGC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|157076339|gb|ABV11022.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           gordonii str. Challis substr. CH1]
 gi|262261455|gb|EEY80154.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus sp.
           2_1_36FAA]
          Length = 196

 Score =  202 bits (513), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 94/190 (49%), Positives = 137/190 (72%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K ++ L +I   N GKT E++    +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRKTLEQILADNSGKTVEQIHADAERDYWMSAEET 180

Query: 196 CDWGVVDKVL 205
             +G +D+++
Sbjct: 181 LAYGFIDEIM 190


>gi|86608099|ref|YP_476861.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|115311344|sp|Q2JHM1|CLPP1_SYNJB RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|86556641|gb|ABD01598.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. JA-2-3B'a(2-13)]
          Length = 203

 Score =  202 bits (513), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 94/172 (54%), Positives = 131/172 (76%), Gaps = 1/172 (0%)

Query: 38  RLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97
           RL +ERI+F+   I+D +A  I   +L+L +++PQK+I +YINSPGG VTAGMAIYDTM 
Sbjct: 26  RLYQERILFIGEPIDDSLANTIVGVMLYLNSQDPQKDIVMYINSPGGSVTAGMAIYDTMN 85

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS-GGFSGQASDIERHAQ 156
            IKP I T C+GQAASMG+ LL+AG KG RFALP++RI+LHQPS G   GQASDIE  A+
Sbjct: 86  HIKPDIVTVCVGQAASMGAFLLAAGTKGKRFALPHSRIMLHQPSLGTIQGQASDIEIRAR 145

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           + +++KRR+NEI  +  G+  E++E+ ++RD  +SA+EA  +G+VD+V+  R
Sbjct: 146 ETLRVKRRMNEILAQTTGQPLEKIERDVERDFYLSATEAQAYGIVDRVIQER 197


>gi|256832187|ref|YP_003160914.1| Endopeptidase Clp [Jonesia denitrificans DSM 20603]
 gi|256685718|gb|ACV08611.1| Endopeptidase Clp [Jonesia denitrificans DSM 20603]
          Length = 207

 Score =  202 bits (513), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 92/171 (53%), Positives = 125/171 (73%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IY+RLLKERI+++  ++ D  A  ICAQ+L L AE+P K+I LYINSPGG +TAGMAIYD
Sbjct: 22  IYNRLLKERIIWLGSEVRDENANAICAQMLLLAAEDPDKDIYLYINSPGGSITAGMAIYD 81

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQFIKP + T  MG AASMG  LLS+G++G RFA P+AR+++HQPSGG  G A+DI  +
Sbjct: 82  TMQFIKPDVVTVAMGMAASMGQFLLSSGKRGKRFATPHARVMMHQPSGGIGGTATDIRIN 141

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           AQ I+ +K+ L E+  +  GKT E++    DRD   +A EA ++G +D ++
Sbjct: 142 AQLILHMKKVLAELIAEQTGKTVEQINTDSDRDRWFTAQEALEYGFIDHIV 192


>gi|288905956|ref|YP_003431178.1| ATP-dependent Clp protease, proteolytic subunit [Streptococcus
           gallolyticus UCN34]
 gi|306831975|ref|ZP_07465130.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|306834099|ref|ZP_07467219.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus bovis
           ATCC 700338]
 gi|325978922|ref|YP_004288638.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288732682|emb|CBI14254.1| ATP-dependent Clp protease, proteolytic subunit [Streptococcus
           gallolyticus UCN34]
 gi|304423672|gb|EFM26818.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus bovis
           ATCC 700338]
 gi|304425901|gb|EFM29018.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325178850|emb|CBZ48894.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 196

 Score =  202 bits (513), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 95/193 (49%), Positives = 140/193 (72%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  I AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K ++ L +I   N G+T E+V    +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRQNLEQILADNSGQTLEKVHADAERDNWMSAQET 180

Query: 196 CDWGVVDKVLMSR 208
            ++G +D+++++ 
Sbjct: 181 LEYGFIDEIMVNN 193


>gi|218262313|ref|ZP_03476827.1| hypothetical protein PRABACTJOHN_02501 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223464|gb|EEC96114.1| hypothetical protein PRABACTJOHN_02501 [Parabacteroides johnsonii
           DSM 18315]
          Length = 221

 Score =  202 bits (513), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 93/187 (49%), Positives = 134/187 (71%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  Q++D+ A +I AQLL+L++ +P K+IS+YI
Sbjct: 32  PTIIEERQLNVAQMDVFSRLMMDRIIFLGTQVDDYTANVIQAQLLYLDSSDPGKDISIYI 91

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V AG  IYDTMQFI   +ST C G AAS  ++LL AG KG R ALP++R+++HQ
Sbjct: 92  NSPGGSVYAGYGIYDTMQFISSDVSTICTGMAASFAAVLLVAGTKGKRMALPHSRVMIHQ 151

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I+K+K+ L  I   + G+ YE+VE   DRD+ M+A EA  +G
Sbjct: 152 PLGGAQGQASDIEITAREILKVKKELYTIISTHSGQPYEKVEHDSDRDYWMTAEEALTYG 211

Query: 200 VVDKVLM 206
           ++DKVL+
Sbjct: 212 MIDKVLV 218


>gi|270292328|ref|ZP_06198539.1| ATP-dependent Clp protease, proteolytic subunit [Streptococcus sp.
           M143]
 gi|270278307|gb|EFA24153.1| ATP-dependent Clp protease, proteolytic subunit [Streptococcus sp.
           M143]
          Length = 196

 Score =  202 bits (513), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 93/190 (48%), Positives = 138/190 (72%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K ++ L +I   N GK+ E++    +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRKTLEQILATNSGKSVEQIHADAERDYWMSAQET 180

Query: 196 CDWGVVDKVL 205
            ++G +D+++
Sbjct: 181 LEYGFIDEIM 190


>gi|309800003|ref|ZP_07694203.1| Clp protease [Streptococcus infantis SK1302]
 gi|308116402|gb|EFO53878.1| Clp protease [Streptococcus infantis SK1302]
          Length = 196

 Score =  201 bits (512), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 93/190 (48%), Positives = 138/190 (72%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K ++ L +I   N GK+ E++    +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRKTLEQILADNSGKSVEQIHADAERDYWMSAQET 180

Query: 196 CDWGVVDKVL 205
            ++G +D+++
Sbjct: 181 LEYGFIDEIM 190


>gi|218439262|ref|YP_002377591.1| ATP-dependent Clp protease proteolytic subunit [Cyanothece sp. PCC
           7424]
 gi|218171990|gb|ACK70723.1| Endopeptidase Clp [Cyanothece sp. PCC 7424]
          Length = 199

 Score =  201 bits (512), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 97/180 (53%), Positives = 135/180 (75%), Gaps = 1/180 (0%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ER  DIY+RL +ERI+F+  ++ D +A  I A LL+L++E+P K I LYINSPGG VTAG
Sbjct: 18  ERWIDIYTRLSQERIIFLGQEVTDGLANRIVAFLLYLDSEDPNKPIYLYINSPGGSVTAG 77

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS-GQA 148
           MAIYDTMQ+IK  + T C+G AASMGS LL+AG  G R ALP++RI++HQP GG    QA
Sbjct: 78  MAIYDTMQYIKSEVVTICVGLAASMGSFLLAAGTPGKRLALPHSRIMIHQPMGGTGRRQA 137

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           +DIE  A++I++I+++LN++  +  GKT E++EK  DRD+ MS  EA ++G++DKV+  R
Sbjct: 138 TDIEIEAKEILRIRQQLNQMLAERTGKTLEQIEKDTDRDYFMSPYEAQEYGLIDKVIEER 197


>gi|293365057|ref|ZP_06611774.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           oralis ATCC 35037]
 gi|307702233|ref|ZP_07639193.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP
           [Streptococcus oralis ATCC 35037]
 gi|315612826|ref|ZP_07887737.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           sanguinis ATCC 49296]
 gi|331266748|ref|YP_004326378.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           oralis Uo5]
 gi|291316507|gb|EFE56943.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           oralis ATCC 35037]
 gi|307624246|gb|EFO03223.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP
           [Streptococcus oralis ATCC 35037]
 gi|315314936|gb|EFU62977.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           sanguinis ATCC 49296]
 gi|326683420|emb|CBZ01038.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           oralis Uo5]
          Length = 196

 Score =  201 bits (512), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 93/190 (48%), Positives = 138/190 (72%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K ++ L +I   N GK+ E++    +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRKTLEQILADNSGKSVEQIHADAERDYWMSAQET 180

Query: 196 CDWGVVDKVL 205
            ++G +D+++
Sbjct: 181 LEYGFIDEIM 190


>gi|119493580|ref|ZP_01624244.1| ATP-dependent Clp protease proteolytic subunit [Lyngbya sp. PCC
           8106]
 gi|119452570|gb|EAW33753.1| ATP-dependent Clp protease proteolytic subunit [Lyngbya sp. PCC
           8106]
          Length = 198

 Score =  201 bits (512), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 95/180 (52%), Positives = 134/180 (74%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ER  DIY+RL +ERI+F+  ++ D +A  I A +L+L++++P K I LYINSPGG VTAG
Sbjct: 18  ERWVDIYTRLNQERIIFLGQEVTDGLANRIVASMLYLDSDDPNKPIYLYINSPGGSVTAG 77

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
           MAIYDTMQ+IK  + T C+G AASMG+ LL++G  G R ALP+ARI++HQP GG  GQAS
Sbjct: 78  MAIYDTMQYIKSDVVTICVGLAASMGAFLLASGTPGKRLALPHARIMIHQPMGGTRGQAS 137

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           DIE  A++I++I+  LN I  +   ++ E+VEK  DRD+ +SA EA ++G+VD+V+  R+
Sbjct: 138 DIEIEAREILRIRSLLNSILAERAHQSIEKVEKDTDRDYFLSAEEAREYGLVDQVIEERV 197


>gi|34540241|ref|NP_904720.1| ATP-dependent Clp protease proteolytic subunit [Porphyromonas
           gingivalis W83]
 gi|60389708|sp|Q7MX09|CLPP_PORGI RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|34396553|gb|AAQ65619.1| ATP-dependent Clp protease, proteolytic subunit [Porphyromonas
           gingivalis W83]
          Length = 222

 Score =  201 bits (512), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 92/186 (49%), Positives = 136/186 (73%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  QI+D+ A +I AQLL+L++ +P K+IS+Y+
Sbjct: 32  PTIIEERQLNVAQMDVFSRLMMDRIIFLGTQIDDYTANVIQAQLLYLDSADPGKDISIYL 91

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V AG  IYDTMQ+I   ++T C G AASM S+LL AG KG RFALP++R+++HQ
Sbjct: 92  NSPGGSVYAGYGIYDTMQYIGCDVATICTGMAASMASVLLVAGTKGKRFALPHSRVMIHQ 151

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASD+E  A++I+++K+ L  I   + GK  E+VEK  DRD+ M+A EA ++G
Sbjct: 152 PLGGMQGQASDLEIAAREILRVKKELYTIISSHSGKPVEQVEKDSDRDYWMTAPEALEYG 211

Query: 200 VVDKVL 205
           ++DK+L
Sbjct: 212 MIDKIL 217


>gi|332169553|gb|AEE18808.1| Endopeptidase Clp [Krokinobacter diaphorus 4H-3-7-5]
          Length = 224

 Score =  201 bits (512), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 91/189 (48%), Positives = 136/189 (71%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GL P ++E+       +D++SRL+ +RI+F+   I D +A ++ AQLLFLE+ +  K+I 
Sbjct: 33  GLTPNIIEERQMNIAIFDVFSRLMMDRIIFLGTGINDQVANIVQAQLLFLESTDANKDIQ 92

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG V AG+ IYDTMQFIKP ++T C G AASMG++LL AG KG R  LP++R++
Sbjct: 93  IYINSPGGSVYAGLGIYDTMQFIKPDVATICTGMAASMGAVLLCAGAKGKRSGLPHSRVM 152

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQASDIE  A++I+ +K+ L +I  K+ G+ Y++V    DRD+ M A +A 
Sbjct: 153 IHQPMGGAQGQASDIEITAKEILTLKKELYDIIAKHSGQDYDKVYNDSDRDYWMKADKAL 212

Query: 197 DWGVVDKVL 205
           ++G++D++L
Sbjct: 213 EYGMIDEIL 221


>gi|154494362|ref|ZP_02033682.1| hypothetical protein PARMER_03717 [Parabacteroides merdae ATCC
           43184]
 gi|154085806|gb|EDN84851.1| hypothetical protein PARMER_03717 [Parabacteroides merdae ATCC
           43184]
          Length = 221

 Score =  201 bits (512), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 93/187 (49%), Positives = 134/187 (71%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  Q++D+ A +I AQLL+L++ +P K+IS+YI
Sbjct: 32  PTIIEERQLNVAQMDVFSRLMMDRIIFLGTQVDDYTANVIQAQLLYLDSSDPGKDISIYI 91

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V AG  IYDTMQFI   +ST C G AAS  ++LL AG KG R ALP++R+++HQ
Sbjct: 92  NSPGGSVYAGYGIYDTMQFISSDVSTICTGMAASFAAVLLVAGTKGKRMALPHSRVMIHQ 151

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I+K+K+ L  I   + G+ YE+VE   DRD+ M+A EA  +G
Sbjct: 152 PLGGAQGQASDIEITAREILKVKKELYTIISTHSGQPYEKVEHDSDRDYWMTAEEALAYG 211

Query: 200 VVDKVLM 206
           ++DKVL+
Sbjct: 212 MIDKVLV 218


>gi|83766223|dbj|BAE56366.1| unnamed protein product [Aspergillus oryzae]
          Length = 267

 Score =  201 bits (512), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 94/178 (52%), Positives = 137/178 (76%), Gaps = 4/178 (2%)

Query: 41  KERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           +ERI+ + G++++ M+  I AQLLFLEA+NPQK I LYINSPGG VTAG+AIYDTM +I 
Sbjct: 79  QERIICLNGEVDETMSASIVAQLLFLEADNPQKPIHLYINSPGGSVTAGLAIYDTMTYIA 138

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
            P+ST C+GQAASMGSLLL  G  G R+ LP++ I++HQPSGG+ GQA+DI  HA++I++
Sbjct: 139 SPVSTICVGQAASMGSLLLCGGHPGKRYCLPHSSIMIHQPSGGYFGQATDIAIHAKEILR 198

Query: 161 IKRRLNEIYVKN-CGK---TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           ++ +LN+IY ++  GK   + +E+EK ++RD+ M A EA + G+VD++L  R+  +E+
Sbjct: 199 VREQLNKIYKRHLTGKKELSLDEIEKLMERDYFMGAQEALEMGIVDEILDRRVRSKEE 256


>gi|306829178|ref|ZP_07462368.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus mitis
           ATCC 6249]
 gi|304428264|gb|EFM31354.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus mitis
           ATCC 6249]
          Length = 196

 Score =  201 bits (512), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 93/190 (48%), Positives = 138/190 (72%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K ++ L +I   N GK+ E++    +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRKTLEQILADNSGKSVEQIHADAERDYWMSAQET 180

Query: 196 CDWGVVDKVL 205
            ++G +D+++
Sbjct: 181 LEYGFIDEIM 190


>gi|284052219|ref|ZP_06382429.1| ATP-dependent Clp protease proteolytic subunit [Arthrospira
           platensis str. Paraca]
          Length = 183

 Score =  201 bits (512), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 93/166 (56%), Positives = 128/166 (77%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           E+   IY RL +ERI+F++ +++D +A  I A +L+L++E+P K I LYINSPGG VTAG
Sbjct: 18  EQWIGIYERLFRERIIFLSEEVDDGIANAIVAYMLYLDSEDPSKPIYLYINSPGGSVTAG 77

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
           MAIYDTMQ+IK  + T C+G AASMG+ LL+AG KG R ALPNARI++HQP GG  GQA+
Sbjct: 78  MAIYDTMQYIKSDVVTICVGMAASMGAFLLAAGTKGKRLALPNARIMIHQPLGGTRGQAT 137

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           DIE  A++I++I++ LNE+  +  G+T E++EK  DRD+ MSA+EA
Sbjct: 138 DIEIEAKEILRIRKVLNEMLAERSGQTLEKIEKDTDRDYFMSAAEA 183


>gi|228472130|ref|ZP_04056896.1| Clp protease [Capnocytophaga gingivalis ATCC 33624]
 gi|228276333|gb|EEK15057.1| Clp protease [Capnocytophaga gingivalis ATCC 33624]
          Length = 219

 Score =  201 bits (512), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 96/201 (47%), Positives = 139/201 (69%)

Query: 5   GCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLL 64
           G +    + +   + P ++E+        D++SRL+ +RI+F+   +  H+A +I AQLL
Sbjct: 16  GVSSTYYDKIISSMTPYIMEERQLNVTQMDVFSRLMMDRIIFLGTDVNSHVANIIQAQLL 75

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           FLE+ +  K+I +YINSPGG V +G+ IYDTMQFIKP ++T C G AASM ++LL AG K
Sbjct: 76  FLESLDASKDIQIYINSPGGEVYSGLGIYDTMQFIKPEVATICTGMAASMAAVLLCAGAK 135

Query: 125 GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
           G R ALP++R+++HQP GG  GQASDIE  A++I+KIK  L +I   + GK+  EV +T 
Sbjct: 136 GKRSALPHSRVMIHQPLGGAQGQASDIEITAREILKIKEELAQIIAHHSGKSLAEVIQTG 195

Query: 185 DRDHIMSASEACDWGVVDKVL 205
           DRD+ M ASEA D+G++D+VL
Sbjct: 196 DRDYWMIASEAKDFGMIDEVL 216


>gi|88801527|ref|ZP_01117055.1| ATP-dependent Clp protease proteolytic subunit 2 [Polaribacter
           irgensii 23-P]
 gi|88782185|gb|EAR13362.1| ATP-dependent Clp protease proteolytic subunit 2 [Polaribacter
           irgensii 23-P]
          Length = 220

 Score =  201 bits (511), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 98/202 (48%), Positives = 139/202 (68%)

Query: 4   EGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQL 63
            G +  +   +   L P ++E+        D++SRL+ +RI+F+   I D +A +I AQL
Sbjct: 15  HGISSTNYTKITSSLTPYIMEERQMNITQMDVFSRLMMDRIIFLGTGINDQVANIIQAQL 74

Query: 64  LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           LFLE+ +  K+IS+YINSPGG V AG+ IYDTMQFIKP ++T C G AASMG++L+ AGE
Sbjct: 75  LFLESVDANKDISIYINSPGGGVYAGLGIYDTMQFIKPDVATICTGMAASMGAVLMCAGE 134

Query: 124 KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
           KG R ALP++RI++HQP GG  GQASDIE  A++I+K+K  L  I   + G++ E+V K 
Sbjct: 135 KGKRSALPHSRIMIHQPLGGAQGQASDIEITAREIMKLKDELYAIIASHSGQSIEKVHKD 194

Query: 184 LDRDHIMSASEACDWGVVDKVL 205
            DRD+ M A EA  +G++D+VL
Sbjct: 195 SDRDYWMKADEAKVYGMIDEVL 216


>gi|171780217|ref|ZP_02921121.1| hypothetical protein STRINF_02005 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281565|gb|EDT47000.1| hypothetical protein STRINF_02005 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 196

 Score =  201 bits (511), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 94/193 (48%), Positives = 140/193 (72%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG ++D+MA  I AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVDDNMANSIIAQLLFLDAQDNTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q SD+   A+ ++K ++ L +I   N G++ E+V    +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQSDMAIAAEHLLKTRQNLEQILADNSGQSLEKVHADAERDNWMSAQET 180

Query: 196 CDWGVVDKVLMSR 208
            ++G +D+++++ 
Sbjct: 181 LEYGFIDEIMVNN 193


>gi|15672655|ref|NP_266829.1| ATP-dependent Clp protease proteolytic subunit [Lactococcus lactis
           subsp. lactis Il1403]
 gi|281491135|ref|YP_003353115.1| ATP-dependent endopeptidase Clp proteolytic subunit ClpP
           [Lactococcus lactis subsp. lactis KF147]
 gi|18202801|sp|Q9CHQ3|CLPP_LACLA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|12723580|gb|AAK04771.1|AE006300_6 ATP-dependent Clp protease proteolytic subunit [Lactococcus lactis
           subsp. lactis Il1403]
 gi|281374885|gb|ADA64404.1| ATP-dependent endopeptidase Clp, proteolytic subunit ClpP
           [Lactococcus lactis subsp. lactis KF147]
 gi|326406161|gb|ADZ63232.1| ATP-dependent Clp protease, protease subunit [Lactococcus lactis
           subsp. lactis CV56]
          Length = 199

 Score =  201 bits (511), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 95/190 (50%), Positives = 136/190 (71%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ++RGER+YDIYSRLLK+RI+ +TG +ED MA  I AQLLFL+A++  K+I L
Sbjct: 4   LVPTVIEQSSRGERAYDIYSRLLKDRIIMLTGPVEDGMANSIIAQLLFLDAQDNTKDIYL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  L+
Sbjct: 64  YVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYLI 123

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K ++RL +I   N  ++ E++ K  +RDH M A E 
Sbjct: 124 HQPMGGTGQGTQQTDMAIVAEQLLKTRKRLEQILADNSNRSLEQIHKDAERDHWMDAKET 183

Query: 196 CDWGVVDKVL 205
            ++G +D+++
Sbjct: 184 LEYGFIDEIM 193


>gi|322374649|ref|ZP_08049163.1| Clp protease [Streptococcus sp. C300]
 gi|321280149|gb|EFX57188.1| Clp protease [Streptococcus sp. C300]
          Length = 196

 Score =  201 bits (511), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 93/190 (48%), Positives = 138/190 (72%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K ++ L +I   N GK+ E++    +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRKTLEKILADNSGKSVEQIHADAERDYWMSAQET 180

Query: 196 CDWGVVDKVL 205
            ++G +D+++
Sbjct: 181 LEYGFIDEIM 190


>gi|108935917|sp|Q2J9A9|CLPP3_FRASC RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
           AltName: Full=Endopeptidase Clp 3
          Length = 213

 Score =  201 bits (511), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 102/191 (53%), Positives = 144/191 (75%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P +VE+T+RGE S D YS+LLKERIVF+  QI+D  A  + AQLLFLE+E+P ++IS+
Sbjct: 12  VLPNIVERTSRGEYSMDPYSKLLKERIVFLGVQIDDVSANDVMAQLLFLESEDPDRDISI 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+  AIYDTMQF++P IST CMGQAAS  ++LL+AG  G RFAL N+RIL+
Sbjct: 72  YINSPGGSFTSLTAIYDTMQFVRPDISTICMGQAASAAAVLLAAGTPGKRFALENSRILI 131

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPS    GQ+SDIE  A++I++++     +  ++ G+T  E+ +  +RD I SA EA +
Sbjct: 132 HQPSAQGEGQSSDIEIQAREILRVRALQETMLARHTGRTETEIRRDTERDKIFSADEAEE 191

Query: 198 WGVVDKVLMSR 208
           +G++D+V+MSR
Sbjct: 192 YGLIDEVIMSR 202


>gi|328955401|ref|YP_004372734.1| ATP-dependent Clp protease proteolytic subunit ClpP [Coriobacterium
           glomerans PW2]
 gi|328455725|gb|AEB06919.1| ATP-dependent Clp protease proteolytic subunit ClpP [Coriobacterium
           glomerans PW2]
          Length = 207

 Score =  201 bits (511), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 107/200 (53%), Positives = 142/200 (71%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVP VVEQT RGERSYDIYSRLL +RIVF+  +I    A L+ AQLL LE+++ +K+IS
Sbjct: 8   ALVPYVVEQTPRGERSYDIYSRLLNDRIVFLGEEINSVTANLVIAQLLHLESQDAEKDIS 67

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG V +G+AI DTM FIK  +ST C+G AASM +LLL+ G  G RF LPN+ ++
Sbjct: 68  LYINSPGGEVYSGLAILDTMNFIKSDVSTICVGMAASMAALLLANGASGKRFCLPNSMMM 127

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  GQ ++IE  A +I + ++ LN I     G+  E+VE   +RDH M A EA 
Sbjct: 128 IHQPSGGAQGQQTEIEIAAAEIKRNRQNLNRILADATGQPIEKVEIDTERDHYMRAEEAQ 187

Query: 197 DWGVVDKVLMSRIDIEEKSK 216
            +G+VD+++ SR + E+ SK
Sbjct: 188 SYGLVDRIISSRSETEKSSK 207


>gi|240281120|gb|EER44623.1| ATP-dependent Clp protease proteolytic subunit [Ajellomyces
           capsulatus H143]
          Length = 229

 Score =  201 bits (510), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 92/170 (54%), Positives = 132/170 (77%), Gaps = 2/170 (1%)

Query: 42  ERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP 101
           ERIV + G++++ ++  I AQLLFLEA+NP+K I LYINSPGG VTAG+A+YDTM +I  
Sbjct: 45  ERIVCLNGEVDESLSASIVAQLLFLEADNPEKPIHLYINSPGGSVTAGLAVYDTMTYISA 104

Query: 102 PISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKI 161
           P+ST C+GQAASMGSLLL  G  G R+ LP++ +++HQPSGG+ GQA+DI  HA++I+++
Sbjct: 105 PVSTICVGQAASMGSLLLCGGHPGKRYCLPHSSVMVHQPSGGYFGQATDIAIHAKEILRV 164

Query: 162 KRRLNEIYVKNCGK--TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           +R+LNEIY  +  K  + +E+EK ++RD+ M A EA + G+VD++L  RI
Sbjct: 165 RRQLNEIYKMHLTKEMSLDEIEKWMERDYFMGAREALEMGIVDEILDRRI 214


>gi|86741462|ref|YP_481862.1| ATP-dependent Clp protease proteolytic subunit [Frankia sp. CcI3]
 gi|86568324|gb|ABD12133.1| ATP-dependent Clp protease proteolytic subunit ClpP / ClpP2
           peptidase. Serine peptidase. MEROPS family S14 [Frankia
           sp. CcI3]
          Length = 224

 Score =  201 bits (510), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 102/191 (53%), Positives = 144/191 (75%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P +VE+T+RGE S D YS+LLKERIVF+  QI+D  A  + AQLLFLE+E+P ++IS+
Sbjct: 23  VLPNIVERTSRGEYSMDPYSKLLKERIVFLGVQIDDVSANDVMAQLLFLESEDPDRDISI 82

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+  AIYDTMQF++P IST CMGQAAS  ++LL+AG  G RFAL N+RIL+
Sbjct: 83  YINSPGGSFTSLTAIYDTMQFVRPDISTICMGQAASAAAVLLAAGTPGKRFALENSRILI 142

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPS    GQ+SDIE  A++I++++     +  ++ G+T  E+ +  +RD I SA EA +
Sbjct: 143 HQPSAQGEGQSSDIEIQAREILRVRALQETMLARHTGRTETEIRRDTERDKIFSADEAEE 202

Query: 198 WGVVDKVLMSR 208
           +G++D+V+MSR
Sbjct: 203 YGLIDEVIMSR 213


>gi|320547331|ref|ZP_08041622.1| ATP-dependent Clp protease, protease subunit [Streptococcus equinus
           ATCC 9812]
 gi|320448029|gb|EFW88781.1| ATP-dependent Clp protease, protease subunit [Streptococcus equinus
           ATCC 9812]
          Length = 196

 Score =  201 bits (510), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 95/193 (49%), Positives = 140/193 (72%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  I AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGIAASMGTIIASSGTKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K ++ L +I   N G+T E+V    +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRQNLEQILADNSGQTLEKVHADAERDNWMSAQET 180

Query: 196 CDWGVVDKVLMSR 208
            ++G +D+++++ 
Sbjct: 181 LEYGFIDEIMVNN 193


>gi|228470612|ref|ZP_04055469.1| Clp protease [Porphyromonas uenonis 60-3]
 gi|228307739|gb|EEK16715.1| Clp protease [Porphyromonas uenonis 60-3]
          Length = 221

 Score =  201 bits (510), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 91/188 (48%), Positives = 136/188 (72%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  ++ D+ A +I AQLL+L+  +P K+IS+YI
Sbjct: 19  PTIIEERQLNVAQMDVFSRLMMDRIIFLGTEVNDYTANVIQAQLLYLDNADPGKDISIYI 78

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V AG  IYDTMQ++   +ST C G AASM ++LL AG +G R+ALP++R+++HQ
Sbjct: 79  NSPGGSVYAGFGIYDTMQYVGCDVSTMCTGMAASMAAVLLVAGAEGKRYALPHSRVMIHQ 138

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I+K+K  L +I   + G++ EE+E+  DRD  M+ASEA ++G
Sbjct: 139 PMGGMQGQASDIEIAAKEILKVKAELYKIIADHSGRSVEEIERDSDRDKWMTASEALEYG 198

Query: 200 VVDKVLMS 207
           ++DKVL S
Sbjct: 199 MIDKVLTS 206


>gi|325092382|gb|EGC45692.1| ATP-dependent Clp protease proteolytic subunit [Ajellomyces
           capsulatus H88]
          Length = 229

 Score =  201 bits (510), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 92/170 (54%), Positives = 132/170 (77%), Gaps = 2/170 (1%)

Query: 42  ERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP 101
           ERIV + G++++ ++  I AQLLFLEA+NP+K I LYINSPGG VTAG+A+YDTM +I  
Sbjct: 45  ERIVCLNGEVDESLSASIVAQLLFLEADNPEKPIHLYINSPGGSVTAGLAVYDTMTYISA 104

Query: 102 PISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKI 161
           P+ST C+GQAASMGSLLL  G  G R+ LP++ +++HQPSGG+ GQA+DI  HA++I+++
Sbjct: 105 PVSTICVGQAASMGSLLLCGGHPGKRYCLPHSSVMVHQPSGGYFGQATDIAIHAKEILRV 164

Query: 162 KRRLNEIYVKNCGK--TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           +R+LNEIY  +  K  + +E+EK ++RD+ M A EA + G+VD++L  RI
Sbjct: 165 RRQLNEIYKMHLTKEMSLDEIEKWMERDYFMGAREALEMGIVDEILDRRI 214


>gi|150009000|ref|YP_001303743.1| ATP-dependent Clp protease proteolytic subunit [Parabacteroides
           distasonis ATCC 8503]
 gi|255014831|ref|ZP_05286957.1| ATP-dependent Clp protease, proteolytic subunit [Bacteroides sp.
           2_1_7]
 gi|256840999|ref|ZP_05546506.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Parabacteroides sp. D13]
 gi|262383890|ref|ZP_06077026.1| Clp protease [Bacteroides sp. 2_1_33B]
 gi|298375768|ref|ZP_06985724.1| Clp protease [Bacteroides sp. 3_1_19]
 gi|301312050|ref|ZP_07217972.1| Clp protease [Bacteroides sp. 20_3]
 gi|149937424|gb|ABR44121.1| ATP-dependent Clp protease, proteolytic subunit [Parabacteroides
           distasonis ATCC 8503]
 gi|256736842|gb|EEU50169.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Parabacteroides sp. D13]
 gi|262294788|gb|EEY82720.1| Clp protease [Bacteroides sp. 2_1_33B]
 gi|298266805|gb|EFI08462.1| Clp protease [Bacteroides sp. 3_1_19]
 gi|300830152|gb|EFK60800.1| Clp protease [Bacteroides sp. 20_3]
          Length = 220

 Score =  201 bits (510), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 93/189 (49%), Positives = 133/189 (70%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  Q++D+ A +I AQLL+L++ +P K+IS+YI
Sbjct: 32  PTIIEERQLNVAQMDVFSRLMMDRIIFLGTQVDDYTANVIQAQLLYLDSSDPGKDISIYI 91

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V AG  IYDTMQFI   +ST C G AASM S+LL AG KG RF L ++R+++HQ
Sbjct: 92  NSPGGSVYAGYGIYDTMQFISSDVSTICTGMAASMASVLLVAGTKGKRFGLKHSRVMIHQ 151

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I+K+K+ L  I   + G+ YEE+E+  DRD  M+A EA  +G
Sbjct: 152 PLGGVQGQASDIEITAREILKVKKELYTIISDHSGRPYEEIERDGDRDFWMTAEEAKKYG 211

Query: 200 VVDKVLMSR 208
           ++D VL  +
Sbjct: 212 MIDDVLTRK 220


>gi|167462695|ref|ZP_02327784.1| ATP-dependent Clp protease proteolytic subunit [Paenibacillus
           larvae subsp. larvae BRL-230010]
          Length = 165

 Score =  201 bits (510), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 91/162 (56%), Positives = 125/162 (77%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPI 103
           +VF+  Q+ D +A  I AQLLFL A++P K+ISLYINSPGG +TAGMAIYDTMQ+IKP +
Sbjct: 1   MVFLGTQVNDAVANSIIAQLLFLAAQDPDKDISLYINSPGGSITAGMAIYDTMQYIKPDV 60

Query: 104 STFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKR 163
           ST C+G AASMG+ LL+AG  G R+ALPN+ +++HQP GG  GQA+DIE  A+ I+K++ 
Sbjct: 61  STICVGMAASMGAFLLNAGAVGKRYALPNSEVMIHQPLGGAEGQATDIEIRAKRIIKMRE 120

Query: 164 RLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            LN I  +  G+  E++E+  DRD+ MSASEA ++G++DKV+
Sbjct: 121 NLNRILSERTGQPLEKIERDTDRDYFMSASEAKEYGLIDKVI 162


>gi|154279296|ref|XP_001540461.1| ATP-dependent Clp protease proteolytic subunit [Ajellomyces
           capsulatus NAm1]
 gi|150412404|gb|EDN07791.1| ATP-dependent Clp protease proteolytic subunit [Ajellomyces
           capsulatus NAm1]
          Length = 211

 Score =  201 bits (510), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 92/170 (54%), Positives = 132/170 (77%), Gaps = 2/170 (1%)

Query: 42  ERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP 101
           ERIV + G++++ ++  I AQLLFLEA+NP+K I LYINSPGG VTAG+A+YDTM +I  
Sbjct: 27  ERIVCLNGEVDESLSASIVAQLLFLEADNPEKPIHLYINSPGGSVTAGLAVYDTMTYISA 86

Query: 102 PISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKI 161
           P+ST C+GQAASMGSLLL  G  G R+ LP++ +++HQPSGG+ GQA+DI  HA++I+++
Sbjct: 87  PVSTICVGQAASMGSLLLCGGHPGKRYCLPHSSVMVHQPSGGYFGQATDIAIHAKEILRV 146

Query: 162 KRRLNEIYVKNCGK--TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           +R+LNEIY  +  K  + +E+EK ++RD+ M A EA + G+VD++L  RI
Sbjct: 147 RRQLNEIYKMHLTKEMSLDEIEKWMERDYFMGAREALEMGIVDEILDRRI 196


>gi|110638106|ref|YP_678315.1| ATP-dependent Clp protease proteolytic subunit ClpP [Cytophaga
           hutchinsonii ATCC 33406]
 gi|110280787|gb|ABG58973.1| ATP-dependent Clp protease proteolytic subunit ClpP [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 229

 Score =  200 bits (509), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 95/196 (48%), Positives = 141/196 (71%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
           + +  +G+ P VVE+        D++SRL+ +RI+F+   I+D++A ++ AQLLFLE+ +
Sbjct: 33  APNYIVGMTPNVVEERQMRATVIDVFSRLMGDRIIFLGTGIDDYVANVVNAQLLFLESVD 92

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
           P+K+I +YINSPGG V AG+ IYDTM +I P +ST C+G AASMG++LL  G    R AL
Sbjct: 93  PKKDIMMYINSPGGSVYAGLGIYDTMHYINPDVSTTCVGLAASMGAVLLCGGAAKKRSAL 152

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           P++RI++HQP GG  GQASDIE  A++I+K+K  L EI  K+ GK  E +EK  DRD+ +
Sbjct: 153 PHSRIMIHQPLGGAQGQASDIEITAREILKLKGELYEILAKHSGKDIETIEKHSDRDYWL 212

Query: 191 SASEACDWGVVDKVLM 206
            A+EA ++G++D+VL+
Sbjct: 213 KAAEAKEYGIIDEVLV 228


>gi|225562415|gb|EEH10694.1| ATP-dependent Clp protease proteolytic subunit [Ajellomyces
           capsulatus G186AR]
          Length = 229

 Score =  200 bits (509), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 92/170 (54%), Positives = 132/170 (77%), Gaps = 2/170 (1%)

Query: 42  ERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP 101
           ERIV + G++++ ++  I AQLLFLEA+NP+K I LYINSPGG VTAG+A+YDTM +I  
Sbjct: 45  ERIVCLNGEVDESLSASIVAQLLFLEADNPEKPIHLYINSPGGSVTAGLAVYDTMTYISA 104

Query: 102 PISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKI 161
           P+ST C+GQAASMGSLLL  G  G R+ LP++ +++HQPSGG+ GQA+DI  HA++I+++
Sbjct: 105 PVSTICVGQAASMGSLLLCGGHPGKRYCLPHSSVMVHQPSGGYFGQATDIAIHAKEILRV 164

Query: 162 KRRLNEIYVKNCGK--TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           +R+LNEIY  +  K  + +E+EK ++RD+ M A EA + G+VD++L  RI
Sbjct: 165 RRQLNEIYKMHLTKEMSLDEIEKWMERDYFMGAREALEMGIVDEILDRRI 214


>gi|269795731|ref|YP_003315186.1| ATP-dependent Clp protease proteolytic subunit ClpP [Sanguibacter
           keddieii DSM 10542]
 gi|269097916|gb|ACZ22352.1| ATP-dependent Clp protease proteolytic subunit ClpP [Sanguibacter
           keddieii DSM 10542]
          Length = 207

 Score =  200 bits (509), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 90/171 (52%), Positives = 127/171 (74%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IY+RLLKERI+++  ++ D  A  ICAQ++ L AE+P+K+I LYINSPGG +TAGMAIYD
Sbjct: 22  IYNRLLKERIIWLGSEVRDDNANAICAQMMLLAAEDPEKDIFLYINSPGGSITAGMAIYD 81

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQFI+P ++T  MG AASMG  LLS+G KG R+A P+AR+++HQPSGG  G A+D+  +
Sbjct: 82  TMQFIQPDVATVAMGMAASMGQFLLSSGTKGKRYATPHARVMMHQPSGGIGGTATDVRIN 141

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+ I+ +KR L E+  +  GK+ E++    DRD   +A EA ++G +DKV+
Sbjct: 142 AELILHMKRVLAELIAEQTGKSTEQIHTDSDRDRWFTAPEALEYGFIDKVV 192


>gi|239932975|ref|ZP_04689928.1| ATP-dependent Clp protease proteolytic subunit 2 [Streptomyces
           ghanaensis ATCC 14672]
 gi|291441328|ref|ZP_06580718.1| ATP-dependent Clp protease proteolytic subunit 2 [Streptomyces
           ghanaensis ATCC 14672]
 gi|291344223|gb|EFE71179.1| ATP-dependent Clp protease proteolytic subunit 2 [Streptomyces
           ghanaensis ATCC 14672]
          Length = 201

 Score =  200 bits (509), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 92/192 (47%), Positives = 138/192 (71%), Gaps = 1/192 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVE+T +GERSYD++SRLL ERIVF+  +I+D +A ++ AQLL LE+  P+ EI++Y
Sbjct: 7   IPNVVERTAQGERSYDVFSRLLSERIVFLGTEIDDGVANVVIAQLLHLESAAPESEIAIY 66

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           +NSPGG VT+ MAIYDTM F++ P+STFC+GQAAS  ++LL+ G+ G RF L +AR+LL 
Sbjct: 67  LNSPGGSVTSLMAIYDTMTFVQAPVSTFCIGQAASTAAVLLAGGDPGRRFVLEHARVLLG 126

Query: 139 QP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP +GG  G  SD+   AQ++V+I+ ++ E+  ++       +   +DRD + +A EA  
Sbjct: 127 QPATGGARGTVSDLSLRAQEMVRIRSQVEEVLSRHTHHDVATLRADMDRDKVFTAQEAVA 186

Query: 198 WGVVDKVLMSRI 209
           +G+ D+VL  R+
Sbjct: 187 YGLADEVLTRRL 198


>gi|290962844|ref|YP_003494026.1| ATP-dependent Clp protease proteolytic subunit 2 [Streptomyces
           scabiei 87.22]
 gi|260652370|emb|CBG75503.1| putative ATP-dependent Clp protease proteolytic subunit 2
           [Streptomyces scabiei 87.22]
          Length = 192

 Score =  200 bits (509), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 90/189 (47%), Positives = 138/189 (73%), Gaps = 1/189 (0%)

Query: 22  VVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS 81
           +VE+T +GERSYD++SRLL ERI+F+  +I+D +A ++ AQLL LE+  P+ EI++YINS
Sbjct: 1   MVERTAQGERSYDVFSRLLSERIIFLGTEIDDGVANVVIAQLLHLESSAPESEIAIYINS 60

Query: 82  PGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP- 140
           PGG  T+ MAIYDTM +++ P+STFC+GQAAS  ++LL+ G+ G RF L +AR+LL QP 
Sbjct: 61  PGGSFTSLMAIYDTMSYVRAPVSTFCVGQAASTAAVLLAGGDAGRRFVLEHARVLLGQPA 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
           SGG  G  SD+   A+++V+I+ ++ E+  ++ G+   E+   +DRD + +A EA  +G+
Sbjct: 121 SGGRQGTVSDLALQAKEMVRIRSQVEEVLARHTGRATAELRADMDRDKVFTAQEAVAYGL 180

Query: 201 VDKVLMSRI 209
            D+VL  R+
Sbjct: 181 ADEVLNRRL 189


>gi|322390033|ref|ZP_08063570.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           parasanguinis ATCC 903]
 gi|321143263|gb|EFX38704.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           parasanguinis ATCC 903]
          Length = 196

 Score =  200 bits (509), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 95/190 (50%), Positives = 137/190 (72%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ VTG +ED MA  I AQLLFL+A++  K+I +
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMVTGPVEDQMANSIIAQLLFLDAQDNTKDIYM 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YIN+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YINTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K +  L +I  +N G++ E+V    +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRNNLEKILAENSGQSIEKVHADAERDNWMSAQET 180

Query: 196 CDWGVVDKVL 205
            ++G +D+++
Sbjct: 181 LEYGFIDEIM 190


>gi|255325480|ref|ZP_05366582.1| Clp protease [Corynebacterium tuberculostearicum SK141]
 gi|311741272|ref|ZP_07715096.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|255297418|gb|EET76733.1| Clp protease [Corynebacterium tuberculostearicum SK141]
 gi|311303442|gb|EFQ79521.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 199

 Score =  200 bits (509), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 91/173 (52%), Positives = 127/173 (73%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL+ERI+F+  Q++D +A  +CAQ+L L AE+P ++ISLYINSPGG VTAGMAIYD
Sbjct: 20  VYERLLRERIIFLGTQVDDEIANKLCAQILLLSAEDPTRDISLYINSPGGSVTAGMAIYD 79

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM++    I+T+ MG AASMG  LLS G KG R+ALP+ARI++HQPS G  G A+DI   
Sbjct: 80  TMKYSPCDIATYGMGLAASMGQFLLSGGTKGKRYALPHARIMMHQPSAGVGGTAADIAIQ 139

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+   + KR + E+  ++ G+T+E++ K  DRD  M+A +A D+G+VD V+ S
Sbjct: 140 AEQFAQTKREMAELIAEHTGQTFEQITKDSDRDRWMTAQQAKDYGIVDHVIES 192


>gi|296876039|ref|ZP_06900095.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           parasanguinis ATCC 15912]
 gi|296432950|gb|EFH18741.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           parasanguinis ATCC 15912]
          Length = 196

 Score =  200 bits (509), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 95/190 (50%), Positives = 136/190 (71%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ VTG +ED MA  I AQLLFL+A++  K+I +
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMVTGPVEDQMANSIIAQLLFLDAQDNTKDIYM 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YIN+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YINTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K +  L +I   N G++ E+V    +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRNNLEKILANNSGQSIEKVHADAERDNWMSAQET 180

Query: 196 CDWGVVDKVL 205
            ++G +D+++
Sbjct: 181 LEYGFIDEIM 190


>gi|312195811|ref|YP_004015872.1| endopeptidase Clp [Frankia sp. EuI1c]
 gi|311227147|gb|ADP80002.1| Endopeptidase Clp [Frankia sp. EuI1c]
          Length = 210

 Score =  200 bits (509), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 99/191 (51%), Positives = 145/191 (75%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P ++E+T+RGE   D YS+LLKERIVF+  QI+D  A  + AQLLFLE+E+P ++IS+
Sbjct: 11  VLPNIIEKTSRGEYGMDPYSKLLKERIVFLGVQIDDVSANDVMAQLLFLESEDPDRDISI 70

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+  AIYDTMQF++P I T CMGQAAS  ++LL+AG  G RFAL N+RIL+
Sbjct: 71  YINSPGGSFTSLTAIYDTMQFVRPDIQTICMGQAASAAAVLLAAGTPGKRFALQNSRILI 130

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSG   GQ+SDIE  A++I++++  L ++   + GK  E++ + ++RD I+SA EA +
Sbjct: 131 HQPSGSGEGQSSDIEIQAREILRMRSLLEKMLADHTGKAEEDIRRDIERDKILSADEAKE 190

Query: 198 WGVVDKVLMSR 208
           +G++D+V+ +R
Sbjct: 191 YGLIDEVIKTR 201


>gi|332177296|gb|AEE12986.1| ATP-dependent Clp protease proteolytic subunit [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 238

 Score =  200 bits (508), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 91/197 (46%), Positives = 139/197 (70%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  ++ D+ A +I AQLL+L+  +P K+IS+YI
Sbjct: 36  PTIIEERQLNVAQMDVFSRLMMDRIIFLGTEVNDYTANVIQAQLLYLDNADPGKDISIYI 95

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V AG  IYDTMQ++   +ST C G AASM ++LL AG +G R+ALP++R+++HQ
Sbjct: 96  NSPGGSVYAGFGIYDTMQYVGCDVSTMCTGMAASMAAVLLVAGAEGKRYALPHSRVMIHQ 155

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I+K+K  L +I   + G++ E++E+  DRD  M+ASEA ++G
Sbjct: 156 PMGGMQGQASDIEIAAKEILKVKAELYKIIADHSGRSVEDIERDSDRDKWMTASEALEYG 215

Query: 200 VVDKVLMSRIDIEEKSK 216
           ++DKVL S   + +  K
Sbjct: 216 MIDKVLTSTKQVAKDKK 232


>gi|298372622|ref|ZP_06982612.1| Clp protease [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275526|gb|EFI17077.1| Clp protease [Bacteroidetes oral taxon 274 str. F0058]
          Length = 226

 Score =  200 bits (508), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 90/186 (48%), Positives = 135/186 (72%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+   I+D++A +I AQLLFL+  +P K+IS+YI
Sbjct: 35  PTILEERQLNVTQMDVFSRLMMDRIIFLGTPIDDYVANVIQAQLLFLDTSDPGKDISIYI 94

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGGVV AG+ IYDTMQ++   + T C G AASM ++LL AGEKG R ALP++R+++HQ
Sbjct: 95  NSPGGVVQAGLGIYDTMQYVSSKVGTICTGMAASMAAVLLVAGEKGRRSALPHSRVMIHQ 154

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           PSGG  GQ+SD+E   +++ K+++ L  I  ++ G+ ++ VEK  DRD+ M+A EA D+G
Sbjct: 155 PSGGMQGQSSDMEIAVREVQKLRKELYHIISEHSGQPFDRVEKDSDRDYWMTAQEALDYG 214

Query: 200 VVDKVL 205
           +VD VL
Sbjct: 215 MVDSVL 220


>gi|291515533|emb|CBK64743.1| ATP-dependent Clp protease proteolytic subunit ClpP [Alistipes
           shahii WAL 8301]
          Length = 222

 Score =  200 bits (508), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 94/189 (49%), Positives = 136/189 (71%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+      + D++SRL+ +RI+F+   I D  A +I AQLLFLE+ +P+K+I +YI
Sbjct: 32  PTIIEERQLNIATMDVFSRLMMDRIIFLGAPIYDDAANIIQAQLLFLESVDPEKDIQIYI 91

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V+AG+ IYDTMQ +   ++T C G AASMG++LL+AG KG R ALP++R+++HQ
Sbjct: 92  NSPGGSVSAGLGIYDTMQLVNSDVATICTGLAASMGAVLLTAGAKGKRSALPHSRVMIHQ 151

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I+K KR L EI   + G   +++EK  DRD+ +SA EA D+G
Sbjct: 152 PLGGAQGQASDIEITAREILKTKRELYEILSVHSGVPVKKIEKDADRDYWLSAREAKDYG 211

Query: 200 VVDKVLMSR 208
           ++D+VL  R
Sbjct: 212 LIDEVLSKR 220


>gi|313885801|ref|ZP_07819544.1| endopeptidase Clp [Porphyromonas asaccharolytica PR426713P-I]
 gi|312924705|gb|EFR35471.1| endopeptidase Clp [Porphyromonas asaccharolytica PR426713P-I]
          Length = 238

 Score =  200 bits (508), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 91/197 (46%), Positives = 139/197 (70%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  ++ D+ A +I AQLL+L+  +P K+IS+YI
Sbjct: 36  PTIIEERQLNVAQMDVFSRLMMDRIIFLGTEVNDYTANVIQAQLLYLDNADPGKDISIYI 95

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V AG  IYDTMQ++   +ST C G AASM ++LL AG +G R+ALP++R+++HQ
Sbjct: 96  NSPGGSVYAGFGIYDTMQYVGCDVSTMCTGMAASMAAVLLVAGAEGKRYALPHSRVMIHQ 155

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I+K+K  L +I   + G++ E++E+  DRD  M+ASEA ++G
Sbjct: 156 PMGGMQGQASDIEIAAKEILKVKAELYKIIADHSGRSVEDIERDSDRDKWMTASEALEYG 215

Query: 200 VVDKVLMSRIDIEEKSK 216
           ++DKVL S   + +  K
Sbjct: 216 MIDKVLTSTKQVAKDKK 232


>gi|311746206|ref|ZP_07719991.1| Clp protease [Algoriphagus sp. PR1]
 gi|126576434|gb|EAZ80712.1| Clp protease [Algoriphagus sp. PR1]
          Length = 223

 Score =  200 bits (508), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 90/187 (48%), Positives = 139/187 (74%)

Query: 22  VVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS 81
           V+E+  +  R  D++SRL+ +RI+F+   I+DH+A +I AQLLFLE+ + +K++ LY+NS
Sbjct: 36  VIEERPQNFREIDVFSRLIMDRIIFLGTGIDDHIANIIVAQLLFLESVDAKKDVLLYVNS 95

Query: 82  PGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
           PGG VTAG+ IYDTMQ+I P ++T C G AASMG++LL+ G K  R AL ++R+++HQPS
Sbjct: 96  PGGSVTAGLGIYDTMQYIGPDVATICTGIAASMGAVLLAGGAKDKRSALKHSRVMIHQPS 155

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
           GG  GQ+SD+E   + I+ +++ L +I   + GKTYEE+E+  DRD+ + A EA D+G++
Sbjct: 156 GGMQGQSSDMEISLKLILSMRQELYQILANHTGKTYEEIERDSDRDYWLKAPEAKDYGLI 215

Query: 202 DKVLMSR 208
           D+VL+ +
Sbjct: 216 DEVLVKK 222


>gi|284036063|ref|YP_003385993.1| endopeptidase Clp [Spirosoma linguale DSM 74]
 gi|283815356|gb|ADB37194.1| Endopeptidase Clp [Spirosoma linguale DSM 74]
          Length = 229

 Score =  200 bits (508), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 92/184 (50%), Positives = 136/184 (73%)

Query: 22  VVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS 81
           V+E+     R  D++SRL+ +RI+F+   ++D++A +I AQLLFLE+ +P+K+I +Y+NS
Sbjct: 42  VIEERPMNFREVDVFSRLMADRIIFMGLPVDDNIANIIVAQLLFLESADPKKDILMYLNS 101

Query: 82  PGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
           PGG V AG+ IYDTMQ+++P ++T C   AASMG++LL+ G  G R ALP+AR+++HQPS
Sbjct: 102 PGGSVYAGLGIYDTMQYVRPDVATVCTSLAASMGAVLLAGGAAGKRSALPHARVMIHQPS 161

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
           GG  GQ+ DIE  A++IVK++  L EI   + GKT EE+EK  DRD  M A EA ++G++
Sbjct: 162 GGAQGQSVDIEITAREIVKLRVELYEILAHHSGKTVEEIEKDSDRDKWMRAEEAKEYGLI 221

Query: 202 DKVL 205
           D+VL
Sbjct: 222 DEVL 225


>gi|188995413|ref|YP_001929665.1| putative ATP-dependent Clp protease proteolytic subunit
           [Porphyromonas gingivalis ATCC 33277]
 gi|188595093|dbj|BAG34068.1| putative ATP-dependent Clp protease proteolytic subunit
           [Porphyromonas gingivalis ATCC 33277]
          Length = 222

 Score =  200 bits (508), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 91/186 (48%), Positives = 136/186 (73%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  QI+D+ A +I AQLL+L++ +P K+IS+Y+
Sbjct: 32  PTIIEERQLNVAQMDVFSRLMMDRIIFLGTQIDDYTANVIQAQLLYLDSADPGKDISIYL 91

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V AG  IYDTMQ+I   ++T C G AASM S+LL AG KG RFALP++R+++HQ
Sbjct: 92  NSPGGSVYAGYGIYDTMQYIGCDVATICTGMAASMASVLLVAGTKGKRFALPHSRVMIHQ 151

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASD+E  A++I+++K+ L  I   + GK  ++VEK  DRD+ M+A EA ++G
Sbjct: 152 PLGGMQGQASDLEIAAREILRVKKELYTIISSHSGKPVKQVEKDSDRDYWMTAPEALEYG 211

Query: 200 VVDKVL 205
           ++DK+L
Sbjct: 212 MIDKIL 217


>gi|254499146|ref|ZP_05111834.1| truncated ATP-dependent Clp protease proteolytic subunit
           [Legionella drancourtii LLAP12]
 gi|254351635|gb|EET10482.1| truncated ATP-dependent Clp protease proteolytic subunit
           [Legionella drancourtii LLAP12]
          Length = 169

 Score =  200 bits (508), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 95/160 (59%), Positives = 130/160 (81%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM 108
           G++EDHMA L+ AQLLFLE+ENP+K+ISLYINSPGGVVTAG+AIYDTMQFIKP +ST C+
Sbjct: 2   GEVEDHMANLVVAQLLFLESENPEKDISLYINSPGGVVTAGLAIYDTMQFIKPDVSTLCI 61

Query: 109 GQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           GQAAS  +LLL AG  G RF LPN+R+++HQP GG+ GQA+DIE HA++ + ++ RLN I
Sbjct: 62  GQAASAAALLLCAGADGKRFCLPNSRVMIHQPLGGYRGQATDIEIHARETLAVRERLNSI 121

Query: 169 YVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
             K+  KT +++ +  +RD+ MSA++A ++G++DKV+  R
Sbjct: 122 MAKHTKKTPDQIMRDTERDNFMSATQAAEYGLIDKVIYDR 161


>gi|289168250|ref|YP_003446519.1| ATP-dependent CLP protease proteolytic subunit [Streptococcus mitis
           B6]
 gi|288907817|emb|CBJ22657.1| ATP-dependent CLP protease proteolytic subunit [Streptococcus mitis
           B6]
          Length = 196

 Score =  200 bits (508), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 93/190 (48%), Positives = 139/190 (73%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K ++ L +I  +N G++ E+V    +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRKTLEKILAENSGQSIEKVHADAERDNWMSAQET 180

Query: 196 CDWGVVDKVL 205
            ++G +D+++
Sbjct: 181 LEYGFIDEIM 190


>gi|29827688|ref|NP_822322.1| ATP-dependent Clp protease proteolytic subunit 2 [Streptomyces
           avermitilis MA-4680]
 gi|67460535|sp|Q82NZ3|CLPP2_STRAW RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|29604788|dbj|BAC68857.1| putative ATP-dependent Clp protease proteolytic subunit 2
           [Streptomyces avermitilis MA-4680]
          Length = 200

 Score =  199 bits (507), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 92/194 (47%), Positives = 139/194 (71%), Gaps = 1/194 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVE+T +GERSYD++SRLL ERI+F+  +I+D +A ++ AQLL LE+ NP+ EI++Y
Sbjct: 6   IPNVVERTPQGERSYDVFSRLLSERIIFLGTEIDDGVANVVIAQLLHLESANPEHEIAIY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  T+ MAIYDTM F++ PISTFC+GQAAS  ++LL+ G+ G RF L +AR+LL 
Sbjct: 66  INSPGGSFTSLMAIYDTMTFVQAPISTFCVGQAASTAAVLLAGGDPGRRFVLEHARVLLG 125

Query: 139 QP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP SGG  G  SD+   A+++++I+ ++ E+  ++       +   +DRD + +A EA  
Sbjct: 126 QPASGGRQGTVSDLSLQAKEMIRIRSQVEEVLSRHTRHDIATLRADMDRDKVFTAQEAVA 185

Query: 198 WGVVDKVLMSRIDI 211
           +G+ D+VL  R+ +
Sbjct: 186 YGLADEVLSRRLAV 199


>gi|126663138|ref|ZP_01734136.1| ATP-dependent Clp protease proteolytic subunit 2 [Flavobacteria
           bacterium BAL38]
 gi|126624796|gb|EAZ95486.1| ATP-dependent Clp protease proteolytic subunit 2 [Flavobacteria
           bacterium BAL38]
          Length = 228

 Score =  199 bits (507), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 90/188 (47%), Positives = 142/188 (75%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           + P ++E+      S D++SRL+ +RI+F+   ++D++A +I AQLLFLE+ +  K+IS+
Sbjct: 39  MTPYIIEERQLNVASMDVFSRLMMDRIIFMGTGVDDYVANIIQAQLLFLESVDASKDISI 98

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+ IYDTMQF+KP ++T C G AASMG++LL AG +G R ALP++R+++
Sbjct: 99  YINSPGGSVYAGLGIYDTMQFVKPDVATICTGMAASMGAVLLCAGAEGKRSALPHSRVMI 158

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  G A+D+E + ++++K+K  L EI  K+ G+++E+V K  +RD+ M A+EA +
Sbjct: 159 HQPSGGAQGVATDMEINLKEMLKLKNELYEIISKHSGQSFEKVHKDSERDYWMIAAEAKE 218

Query: 198 WGVVDKVL 205
           +G++D+VL
Sbjct: 219 YGMIDEVL 226


>gi|309791159|ref|ZP_07685691.1| endopeptidase Clp [Oscillochloris trichoides DG6]
 gi|308226721|gb|EFO80417.1| endopeptidase Clp [Oscillochloris trichoides DG6]
          Length = 198

 Score =  199 bits (507), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 89/187 (47%), Positives = 134/187 (71%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P ++E+T RGERS+DI+SRLL+ER++ +   I+D MA ++ AQLL L+ ++P+++I LY
Sbjct: 6   IPTIIERTARGERSWDIFSRLLQERVIMIGTPIDDDMAAVVVAQLLVLQHQDPERDIWLY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGVV AG+AIYDTMQ I P + T C+G+AASM ++LL  G KG RFALPNA I  H
Sbjct: 66  INSPGGVVRAGLAIYDTMQLISPDVCTVCVGRAASMATVLLCGGAKGKRFALPNATIHSH 125

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
              GG  G A D+E    ++++++R L EI  ++ G+  E +E+   RD  ++A +A ++
Sbjct: 126 PAGGGAEGYAPDVEIAVNEMLRLQRMLREIMAEHSGQPIERIEQDFSRDAYLTAQQAIEY 185

Query: 199 GVVDKVL 205
           G++D +L
Sbjct: 186 GLIDSIL 192


>gi|163848364|ref|YP_001636408.1| endopeptidase Clp [Chloroflexus aurantiacus J-10-fl]
 gi|222526286|ref|YP_002570757.1| Endopeptidase Clp [Chloroflexus sp. Y-400-fl]
 gi|163669653|gb|ABY36019.1| Endopeptidase Clp [Chloroflexus aurantiacus J-10-fl]
 gi|222450165|gb|ACM54431.1| Endopeptidase Clp [Chloroflexus sp. Y-400-fl]
          Length = 197

 Score =  199 bits (507), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 91/187 (48%), Positives = 135/187 (72%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP +VE+T+RGERS+DI+SRLLKER+V +   I+D +A+ + AQLL L+ ++P+++I +Y
Sbjct: 6   VPTIVERTSRGERSWDIFSRLLKERVVLIGEPIDDELASSVIAQLLVLQQQDPERDIWMY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGV+ AG+AIYDTMQ + P I T C+G+AASM ++LL AG KG RFALP+A I  H
Sbjct: 66  INSPGGVIRAGLAIYDTMQLVTPDICTVCVGRAASMATVLLCAGTKGKRFALPHATIHSH 125

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
              GG  G A D++    ++++++R L EI  K+ G+  E +E    RD  M+A +A ++
Sbjct: 126 PAGGGAEGYAPDVQIAVDEMLRLQRLLREIMAKHSGQPVERLEADFSRDFYMTAPQALEY 185

Query: 199 GVVDKVL 205
           G++D +L
Sbjct: 186 GLIDAIL 192


>gi|158317029|ref|YP_001509537.1| ATP-dependent Clp protease proteolytic subunit [Frankia sp.
           EAN1pec]
 gi|158112434|gb|ABW14631.1| Endopeptidase Clp [Frankia sp. EAN1pec]
          Length = 214

 Score =  199 bits (507), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 100/191 (52%), Positives = 142/191 (74%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P ++E+T+RGE   D YS+LLKERIVF+   I+D  A  + AQLLFLE+E+P ++IS+
Sbjct: 15  VLPNIIEKTSRGEYGMDPYSKLLKERIVFLGAPIDDTSANDVMAQLLFLESEDPDRDISI 74

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+  AIYDTMQF++P I T CMGQAAS  ++LL+AG  G RFAL N+RIL+
Sbjct: 75  YINSPGGSFTSLTAIYDTMQFVRPDIQTICMGQAASAAAVLLAAGTPGKRFALQNSRILI 134

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPS    GQ+SDIE  A++I++++  L  +  ++ G+T E V K ++RD I SA EA D
Sbjct: 135 HQPSAQGEGQSSDIEIQAREILRMRSLLEHMLAEHTGRTEEAVRKDIERDKIFSADEAKD 194

Query: 198 WGVVDKVLMSR 208
           +G++D+V+ +R
Sbjct: 195 YGIIDEVIKTR 205


>gi|163786488|ref|ZP_02180936.1| ATP-dependent Clp protease, proteolytic subunit [Flavobacteriales
           bacterium ALC-1]
 gi|159878348|gb|EDP72404.1| ATP-dependent Clp protease, proteolytic subunit [Flavobacteriales
           bacterium ALC-1]
          Length = 224

 Score =  199 bits (507), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 91/188 (48%), Positives = 136/188 (72%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P ++E+       +D++SRL+ +RI+F+   + D +A +I AQLLFL++ +  K++ +
Sbjct: 34  LTPNIIEERQMNIAVFDVFSRLMMDRIIFLGTGVNDQVANIIQAQLLFLQSTDASKDVQI 93

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+ IYDTMQFIKP ++T C G AASM ++LL AGEKG R AL ++R+++
Sbjct: 94  YINSPGGSVYAGLGIYDTMQFIKPDVATICTGIAASMAAVLLCAGEKGKRSALKHSRVMI 153

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP  G  GQ SD+E   ++ +KIK+ L +I   + GKTYE+VEK  DRD+ M+++EA D
Sbjct: 154 HQPMSGTQGQVSDMEIAVRETLKIKKELYDIISGHSGKTYEQVEKDSDRDYWMTSNEALD 213

Query: 198 WGVVDKVL 205
           +G++D+VL
Sbjct: 214 YGMIDEVL 221


>gi|86140705|ref|ZP_01059264.1| ATP-dependent Clp protease proteolytic subunit 2 [Leeuwenhoekiella
           blandensis MED217]
 gi|85832647|gb|EAQ51096.1| ATP-dependent Clp protease proteolytic subunit 2 [Leeuwenhoekiella
           blandensis MED217]
          Length = 237

 Score =  199 bits (507), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 91/190 (47%), Positives = 136/190 (71%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +GL P ++E+      + D++SRL+ +RI+F+   I D +A ++ AQLLFLE+ +  K+I
Sbjct: 45  VGLTPNIIEERQMNAVAMDVFSRLMMDRIIFLGTGINDQVANIVQAQLLFLESADASKDI 104

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG V AG+ IYDTMQFIKP ++T C G AASMG++LL AG KG R  L ++R+
Sbjct: 105 QIYINSPGGSVYAGLGIYDTMQFIKPDVATICTGMAASMGAVLLCAGAKGKRSGLTHSRV 164

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDIE  A++I+ +K  L  I  K+ G+TY++V +  DRD+ M A +A
Sbjct: 165 MIHQPMGGAQGQASDIEITAKEILTLKEELYNIIAKHSGQTYDKVYEDSDRDYWMKADKA 224

Query: 196 CDWGVVDKVL 205
            ++G++D++L
Sbjct: 225 LEYGMIDEIL 234


>gi|307152499|ref|YP_003887883.1| Endopeptidase Clp [Cyanothece sp. PCC 7822]
 gi|306982727|gb|ADN14608.1| Endopeptidase Clp [Cyanothece sp. PCC 7822]
          Length = 199

 Score =  199 bits (506), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 96/181 (53%), Positives = 134/181 (74%), Gaps = 1/181 (0%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ER  DIY+RL +ERI+F+  ++ D +A  I A LL+L++E+P K I LYINSPGG VTAG
Sbjct: 18  ERWIDIYTRLSQERIIFLGQEVTDGLANRIVAFLLYLDSEDPNKPIYLYINSPGGSVTAG 77

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS-GQA 148
           MAIYDTMQ+IK  + T C+G AASMGS LL+AG  G R ALP++RI++HQP GG    QA
Sbjct: 78  MAIYDTMQYIKSEVITICVGLAASMGSFLLAAGTPGKRLALPHSRIMIHQPMGGTGRRQA 137

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           +DIE  A++I++I+ +LN++     GK+ E++EK  DRD+ MS  EA ++G++DKV+  R
Sbjct: 138 TDIEIEAKEILRIRTQLNQMLADRTGKSIEQIEKDTDRDYFMSPYEAKEYGLIDKVIEER 197

Query: 209 I 209
           +
Sbjct: 198 V 198


>gi|269219685|ref|ZP_06163539.1| Clp protease [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269210927|gb|EEZ77267.1| Clp protease [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 197

 Score =  199 bits (506), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 95/173 (54%), Positives = 128/173 (73%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y+RLLKERI+++  ++ +  A +ICAQ+L L AE+P+++I LYINSPGG VTAGMAIYD
Sbjct: 15  VYTRLLKERIIWLGEEVREDNANIICAQMLLLAAEDPERDIYLYINSPGGSVTAGMAIYD 74

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQFI+P + T  MG AASMG  LLSAG KG R+  P+AR+LLHQP GG  G A+DI  +
Sbjct: 75  TMQFIQPDVVTVGMGMAASMGQFLLSAGAKGKRYITPHARVLLHQPLGGAGGTATDIRIN 134

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A  I+++KR L EI  +  GKT E+V +  DRDH  +A EA ++G VD+++ S
Sbjct: 135 ADLILQMKRELAEITAEATGKTPEQVIEDGDRDHWFNAQEALEYGFVDRIVSS 187


>gi|311743055|ref|ZP_07716863.1| ATP-dependent Clp protease proteolytic subunit [Aeromicrobium
           marinum DSM 15272]
 gi|311313735|gb|EFQ83644.1| ATP-dependent Clp protease proteolytic subunit [Aeromicrobium
           marinum DSM 15272]
          Length = 192

 Score =  199 bits (506), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 94/173 (54%), Positives = 125/173 (72%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IY RLLKERIVF+  ++ +  A  ICAQ+L L AE+P  +ISLYINSPGG V AGMAIYD
Sbjct: 14  IYQRLLKERIVFLGSEVRNDNANAICAQMLLLSAEDPTSDISLYINSPGGSVDAGMAIYD 73

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQFI   ++TF MG AASMG  LL+AG KG R+ALP+ARI++HQPSGG  G ASDI+  
Sbjct: 74  TMQFISNDVATFGMGLAASMGQFLLAAGTKGKRYALPHARIMMHQPSGGIGGSASDIKIQ 133

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+  + +K++LNE+   + G+T E+VE   DRD   +  +A ++G +D V+ +
Sbjct: 134 AEQSILLKKQLNELQSLHTGQTLEQVEIDADRDRWFTPQQALEYGFIDHVVAT 186


>gi|313158115|gb|EFR57520.1| endopeptidase Clp [Alistipes sp. HGB5]
          Length = 222

 Score =  199 bits (506), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 93/189 (49%), Positives = 136/189 (71%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+      + D++SRL+ +RI+F+   I D  A +I AQLLFLE+ +P+K+I +YI
Sbjct: 32  PTIIEERQLNIATMDVFSRLMMDRIIFLGAPIYDDAANIIQAQLLFLESVDPEKDIQIYI 91

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V+AG+ IYDTMQ +   ++T C G AASMG++LL+AG KG R ALP++R+++HQ
Sbjct: 92  NSPGGSVSAGLGIYDTMQLVNSDVATICTGLAASMGAVLLTAGAKGKRSALPHSRVMIHQ 151

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I+K KR L EI   + G   +++EK  DRD+ +SA EA ++G
Sbjct: 152 PLGGAQGQASDIEITAREIMKTKRELYEILSAHSGVALKKIEKDADRDYWLSAREAKEYG 211

Query: 200 VVDKVLMSR 208
           ++D+VL  R
Sbjct: 212 LIDEVLSKR 220


>gi|302532652|ref|ZP_07284994.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sp. C]
 gi|302441547|gb|EFL13363.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sp. C]
          Length = 200

 Score =  199 bits (506), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 92/191 (48%), Positives = 138/191 (72%), Gaps = 1/191 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP V+E+T +GERSYD++SRLL ERI+F+  +I+D +A ++ AQLL LE+ NP++EIS+Y
Sbjct: 6   VPYVIERTTQGERSYDVFSRLLNERIIFLGTEIDDGVANVVIAQLLHLESANPEQEISIY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           +NSPGG  T+ MAIYDTM F++ PISTFC+GQAAS  ++LL+ G+ G RF L +AR+LL 
Sbjct: 66  LNSPGGSFTSLMAIYDTMTFVQAPISTFCVGQAASTAAVLLAGGDPGRRFVLRHARVLLG 125

Query: 139 QP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP SGG  G  SD+   A+++V+I+ ++ E+  ++       +   +DR+ + +A EA  
Sbjct: 126 QPASGGRQGTVSDLSLAAKEMVRIRSQVEEVLSRHTHHDAATLRADMDREKVFTAEEAVA 185

Query: 198 WGVVDKVLMSR 208
           +G+ D+VL  R
Sbjct: 186 YGLADEVLSRR 196


>gi|86605372|ref|YP_474135.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           JA-3-3Ab]
 gi|115311343|sp|Q2JWJ1|CLPP1_SYNJA RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|86553914|gb|ABC98872.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP
           [Synechococcus sp. JA-3-3Ab]
          Length = 203

 Score =  199 bits (506), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 92/172 (53%), Positives = 132/172 (76%), Gaps = 1/172 (0%)

Query: 38  RLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97
           RL +ERI+F+   I+D++A  I   +L+L +++PQK+I +YINSPGG VTAGMAIYDTM 
Sbjct: 26  RLYQERILFIGEPIDDNLANTIVGVMLYLNSQDPQKDIVMYINSPGGSVTAGMAIYDTMN 85

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS-GGFSGQASDIERHAQ 156
            +KP I T C+GQAASMG+ LL+AG KG RFALP++RI+LHQPS G   GQASDIE  A+
Sbjct: 86  HVKPDIVTVCVGQAASMGAFLLAAGTKGKRFALPHSRIMLHQPSLGMIQGQASDIEIRAR 145

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           + +++KRR+NE+  +  G+  E++E+ ++RD  +SA+EA  +G+VD+V+  R
Sbjct: 146 ETLRVKRRMNELLAQMTGQPLEKIERDVERDFYLSATEAQAYGIVDRVIQER 197


>gi|15900641|ref|NP_345245.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae TIGR4]
 gi|15902700|ref|NP_358250.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae R6]
 gi|111657500|ref|ZP_01408244.1| hypothetical protein SpneT_02001290 [Streptococcus pneumoniae
           TIGR4]
 gi|116516216|ref|YP_816144.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae D39]
 gi|148985320|ref|ZP_01818543.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           pneumoniae SP3-BS71]
 gi|148989824|ref|ZP_01821118.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           pneumoniae SP6-BS73]
 gi|148992407|ref|ZP_01822102.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           pneumoniae SP9-BS68]
 gi|148997179|ref|ZP_01824833.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae SP11-BS70]
 gi|149003358|ref|ZP_01828247.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           pneumoniae SP14-BS69]
 gi|149007624|ref|ZP_01831241.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           pneumoniae SP18-BS74]
 gi|149020386|ref|ZP_01835278.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           pneumoniae SP23-BS72]
 gi|168484851|ref|ZP_02709796.1| Clp protease [Streptococcus pneumoniae CDC1873-00]
 gi|168486762|ref|ZP_02711270.1| Clp protease [Streptococcus pneumoniae CDC1087-00]
 gi|168488414|ref|ZP_02712613.1| Clp protease [Streptococcus pneumoniae SP195]
 gi|168490833|ref|ZP_02714976.1| Clp protease [Streptococcus pneumoniae CDC0288-04]
 gi|168492895|ref|ZP_02717038.1| Clp protease [Streptococcus pneumoniae CDC3059-06]
 gi|168575405|ref|ZP_02721341.1| Clp protease [Streptococcus pneumoniae MLV-016]
 gi|169832484|ref|YP_001694209.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae Hungary19A-6]
 gi|182683666|ref|YP_001835413.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae CGSP14]
 gi|221231543|ref|YP_002510695.1| putative ATP-dependent Clp protease proteolytic subunit
           [Streptococcus pneumoniae ATCC 700669]
 gi|225854255|ref|YP_002735767.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae JJA]
 gi|225860721|ref|YP_002742230.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|237650410|ref|ZP_04524662.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae CCRI 1974]
 gi|237822478|ref|ZP_04598323.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae CCRI 1974M2]
 gi|298230046|ref|ZP_06963727.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|298255823|ref|ZP_06979409.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae str. Canada MDR_19A]
 gi|298502532|ref|YP_003724472.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae TCH8431/19A]
 gi|303255838|ref|ZP_07341879.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae BS455]
 gi|303260009|ref|ZP_07345983.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae SP-BS293]
 gi|303261415|ref|ZP_07347363.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae SP14-BS292]
 gi|303264082|ref|ZP_07350003.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae BS397]
 gi|303267620|ref|ZP_07353460.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae BS457]
 gi|303269546|ref|ZP_07355310.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae BS458]
 gi|307067350|ref|YP_003876316.1| ATp-dependent Clp protease [Streptococcus pneumoniae AP200]
 gi|307127702|ref|YP_003879733.1| Clp protease [Streptococcus pneumoniae 670-6B]
 gi|54036855|sp|P63788|CLPP_STRR6 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|54040893|sp|P63787|CLPP_STRPN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|122278970|sp|Q04LF4|CLPP_STRP2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706476|sp|B1IAS4|CLPP_STRPI RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706544|sp|B2INC9|CLPP_STRPS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|254763803|sp|B8ZN39|CLPP_STRPJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|254763805|sp|C1CD96|CLPP_STRZJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|254763807|sp|C1CQK8|CLPP_STRZT RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|14972220|gb|AAK74885.1| ATP-dependent Clp protease, proteolytic subunit [Streptococcus
           pneumoniae TIGR4]
 gi|15458242|gb|AAK99460.1| ATP-dependent CLP protease proteolytic subunit [Streptococcus
           pneumoniae R6]
 gi|116076792|gb|ABJ54512.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           pneumoniae D39]
 gi|147756879|gb|EDK63919.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae SP11-BS70]
 gi|147758541|gb|EDK65539.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           pneumoniae SP14-BS69]
 gi|147760779|gb|EDK67750.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           pneumoniae SP18-BS74]
 gi|147922518|gb|EDK73637.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           pneumoniae SP3-BS71]
 gi|147924766|gb|EDK75850.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           pneumoniae SP6-BS73]
 gi|147928724|gb|EDK79737.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           pneumoniae SP9-BS68]
 gi|147930688|gb|EDK81670.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           pneumoniae SP23-BS72]
 gi|168994986|gb|ACA35598.1| Clp protease [Streptococcus pneumoniae Hungary19A-6]
 gi|172042007|gb|EDT50053.1| Clp protease [Streptococcus pneumoniae CDC1873-00]
 gi|182629000|gb|ACB89948.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae CGSP14]
 gi|183570255|gb|EDT90783.1| Clp protease [Streptococcus pneumoniae CDC1087-00]
 gi|183572984|gb|EDT93512.1| Clp protease [Streptococcus pneumoniae SP195]
 gi|183574558|gb|EDT95086.1| Clp protease [Streptococcus pneumoniae CDC0288-04]
 gi|183577054|gb|EDT97582.1| Clp protease [Streptococcus pneumoniae CDC3059-06]
 gi|183578670|gb|EDT99198.1| Clp protease [Streptococcus pneumoniae MLV-016]
 gi|220674003|emb|CAR68516.1| putative ATP-dependent Clp protease proteolytic subunit
           [Streptococcus pneumoniae ATCC 700669]
 gi|225723038|gb|ACO18891.1| Clp protease [Streptococcus pneumoniae JJA]
 gi|225727276|gb|ACO23127.1| Clp protease [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238127|gb|ADI69258.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae TCH8431/19A]
 gi|301793906|emb|CBW36302.1| putative ATP-dependent Clp protease proteolytic subunit
           [Streptococcus pneumoniae INV104]
 gi|301799764|emb|CBW32333.1| putative ATP-dependent Clp protease proteolytic subunit
           [Streptococcus pneumoniae OXC141]
 gi|301801594|emb|CBW34292.1| putative ATP-dependent Clp protease proteolytic subunit
           [Streptococcus pneumoniae INV200]
 gi|302597222|gb|EFL64327.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae BS455]
 gi|302637549|gb|EFL68036.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae SP14-BS292]
 gi|302638928|gb|EFL69389.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae SP-BS293]
 gi|302640931|gb|EFL71314.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae BS458]
 gi|302642850|gb|EFL73157.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae BS457]
 gi|302646487|gb|EFL76713.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae BS397]
 gi|306408887|gb|ADM84314.1| Protease subunit of ATP-dependent Clp proteases [Streptococcus
           pneumoniae AP200]
 gi|306484764|gb|ADM91633.1| Clp protease [Streptococcus pneumoniae 670-6B]
 gi|327390104|gb|EGE88447.1| clp protease family protein [Streptococcus pneumoniae GA04375]
 gi|332073128|gb|EGI83607.1| clp protease family protein [Streptococcus pneumoniae GA17570]
 gi|332076026|gb|EGI86492.1| clp protease family protein [Streptococcus pneumoniae GA41301]
 gi|332077163|gb|EGI87625.1| clp protease family protein [Streptococcus pneumoniae GA17545]
          Length = 196

 Score =  199 bits (506), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 93/190 (48%), Positives = 138/190 (72%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K +  L +I  +N G++ E+V    +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRNTLEKILAENSGQSMEKVHADAERDNWMSAQET 180

Query: 196 CDWGVVDKVL 205
            ++G +D+++
Sbjct: 181 LEYGFIDEIM 190


>gi|307708900|ref|ZP_07645360.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus mitis
           SK564]
 gi|322376945|ref|ZP_08051438.1| Clp protease [Streptococcus sp. M334]
 gi|307620236|gb|EFN99352.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus mitis
           SK564]
 gi|321282752|gb|EFX59759.1| Clp protease [Streptococcus sp. M334]
          Length = 196

 Score =  199 bits (505), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 93/190 (48%), Positives = 138/190 (72%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K +  L +I  +N G++ E+V    +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRNTLEKILAENSGQSIEKVHADAERDNWMSAQET 180

Query: 196 CDWGVVDKVL 205
            ++G +D+++
Sbjct: 181 LEYGFIDEIM 190


>gi|295132506|ref|YP_003583182.1| ATP-dependent Clp protease proteolytic subunit 2 [Zunongwangia
           profunda SM-A87]
 gi|294980521|gb|ADF50986.1| ATP-dependent Clp protease proteolytic subunit 2 [Zunongwangia
           profunda SM-A87]
          Length = 224

 Score =  199 bits (505), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 91/190 (47%), Positives = 137/190 (72%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +G+ P ++E+      + D++SRL+ +RI+F+   I D +A +I AQLLFLE+ +  K+I
Sbjct: 32  VGMTPNIIEERQMNAVAMDVFSRLMMDRIIFMGTGINDQVANIIQAQLLFLESTDSSKDI 91

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG V AG+ IYDTMQFIKP ++T C G AASMG++LL AG +G R  LP++R+
Sbjct: 92  QIYINSPGGSVYAGLGIYDTMQFIKPDVATICTGMAASMGAVLLCAGAEGKRSGLPHSRV 151

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDIE  A++I+ +K  L +I  K+ G++YE+V +  DRD+ M A  A
Sbjct: 152 MIHQPLGGAQGQASDIEITAREIITLKEELYKIISKHSGQSYEKVYEDSDRDYWMKADRA 211

Query: 196 CDWGVVDKVL 205
            ++G++D++L
Sbjct: 212 KEYGMIDEIL 221


>gi|312868210|ref|ZP_07728410.1| endopeptidase Clp [Streptococcus parasanguinis F0405]
 gi|311095955|gb|EFQ54199.1| endopeptidase Clp [Streptococcus parasanguinis F0405]
          Length = 196

 Score =  199 bits (505), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 94/193 (48%), Positives = 139/193 (72%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ VTG +ED MA  I AQLLFL+A++  K+I +
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMVTGPVEDQMANSIIAQLLFLDAQDNTKDIYM 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YIN+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YINTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K +  L +I  +N G++ ++V    +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRNNLEKILAENSGQSIKKVHADAERDNWMSAQET 180

Query: 196 CDWGVVDKVLMSR 208
            ++G +D+++++ 
Sbjct: 181 LEYGFIDEIMVNN 193


>gi|225856422|ref|YP_002737933.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae P1031]
 gi|254763806|sp|C1CJJ5|CLPP_STRZP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|225724460|gb|ACO20312.1| Clp protease [Streptococcus pneumoniae P1031]
          Length = 196

 Score =  199 bits (505), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 93/190 (48%), Positives = 138/190 (72%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K +  L +I  +N G++ E+V    +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRNTLEKILAENSGQSMEKVHADAERDNWMSAHET 180

Query: 196 CDWGVVDKVL 205
            ++G +D+++
Sbjct: 181 LEYGFIDEIM 190


>gi|312862980|ref|ZP_07723219.1| endopeptidase Clp [Streptococcus vestibularis F0396]
 gi|322517397|ref|ZP_08070271.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           vestibularis ATCC 49124]
 gi|311101475|gb|EFQ59679.1| endopeptidase Clp [Streptococcus vestibularis F0396]
 gi|322123995|gb|EFX95551.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           vestibularis ATCC 49124]
          Length = 196

 Score =  199 bits (505), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 94/190 (49%), Positives = 137/190 (72%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  I AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K +  L +I   N G++ E+V    +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRNNLEQILADNSGQSIEKVHVDAERDNWMSAQET 180

Query: 196 CDWGVVDKVL 205
            ++G +D+++
Sbjct: 181 LEYGFIDEIM 190


>gi|256420340|ref|YP_003120993.1| endopeptidase Clp [Chitinophaga pinensis DSM 2588]
 gi|256035248|gb|ACU58792.1| Endopeptidase Clp [Chitinophaga pinensis DSM 2588]
          Length = 234

 Score =  199 bits (505), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 92/189 (48%), Positives = 133/189 (70%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            L P ++E+        D++SRL+ +RI+F+   + D++A +I AQLLFLE+ +  ++I 
Sbjct: 32  ALTPNIIEERPMNMAIMDVFSRLMMDRIIFMGDPVNDYVANIITAQLLFLESTDRTRDIQ 91

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG V AG+ IYDTMQ I P ++T C G AAS G++LL AG KG R AL +AR++
Sbjct: 92  MYINSPGGSVYAGLGIYDTMQIIAPDVATICTGMAASFGAVLLVAGTKGKRTALKHARVM 151

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQ SDIE  A++ VK+K+ LNEI   +CG+  ++VEK  DRD+ M+A EA 
Sbjct: 152 IHQPHGGAEGQTSDIEITAREFVKLKKELNEIIATHCGQPVKKVEKDSDRDYWMTADEAK 211

Query: 197 DWGVVDKVL 205
           ++G++D VL
Sbjct: 212 EYGIIDDVL 220


>gi|327404286|ref|YP_004345124.1| ATP-dependent Clp protease proteolytic subunit ClpP [Fluviicola
           taffensis DSM 16823]
 gi|327319794|gb|AEA44286.1| ATP-dependent Clp protease proteolytic subunit ClpP [Fluviicola
           taffensis DSM 16823]
          Length = 222

 Score =  198 bits (504), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 92/189 (48%), Positives = 138/189 (73%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P ++E+ +      D++SRL+ +RI+F+   I D +A +I AQLLFLE+ + +K+I +
Sbjct: 30  LTPYIIEERHMNMTQMDVFSRLMMDRIIFLGTGINDQVANIINAQLLFLESVDAKKDIQI 89

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG V AG+ IYDTMQ+IKP ++T C G AASMG++L+ AG +G R AL +AR+++
Sbjct: 90  YLNSPGGSVYAGLGIYDTMQYIKPDVATICTGMAASMGAVLMCAGAEGKRSALKHARVMI 149

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I K+K+ L +I   +  +TYE+V    DRD+ M+A+EA D
Sbjct: 150 HQPLGGAQGQASDIEITAREIQKLKKELYDIIATHSKQTYEKVWADSDRDYWMTAAEAKD 209

Query: 198 WGVVDKVLM 206
           +G+VD++L+
Sbjct: 210 YGMVDEILL 218


>gi|21225557|ref|NP_631336.1| ATP-dependent Clp protease proteolytic subunit 2 [Streptomyces
           coelicolor A3(2)]
 gi|256783423|ref|ZP_05521854.1| ATP-dependent Clp protease proteolytic subunit 2 [Streptomyces
           lividans TK24]
 gi|289767299|ref|ZP_06526677.1| Clp protease [Streptomyces lividans TK24]
 gi|18203601|sp|Q9X7S0|CLPP4_STRCO RecName: Full=Putative ATP-dependent Clp protease proteolytic
           subunit-like; AltName: Full=Endopeptidase Clp-like
 gi|4835315|emb|CAB42937.1| putative ATP-dependent Clp protease proteolytic subunit 2
           [Streptomyces coelicolor A3(2)]
 gi|289697498|gb|EFD64927.1| Clp protease [Streptomyces lividans TK24]
          Length = 200

 Score =  198 bits (504), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 92/192 (47%), Positives = 137/192 (71%), Gaps = 1/192 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVE+T +GERSYD++SRLL ERI+F+  +I+D +A ++ AQLL LE+  P+ EI++Y
Sbjct: 6   IPNVVERTPQGERSYDVFSRLLSERIIFLGTEIDDGVANVVIAQLLHLESSAPESEIAVY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  T+ MAIYDTM F++ PISTFC+GQAAS  ++LL+ G+ G RF L +AR+LL 
Sbjct: 66  INSPGGSFTSLMAIYDTMTFVQAPISTFCVGQAASTAAVLLAGGDPGRRFVLEHARVLLG 125

Query: 139 QP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP SGG  G  SD+   A+++V+I+ ++ E+  ++       +   +DRD + +A EA  
Sbjct: 126 QPASGGRQGTVSDLALQAKEMVRIRSQVEEVLARHTHHDVATLRADMDRDKVFTAQEAVA 185

Query: 198 WGVVDKVLMSRI 209
           +G+ D+VL  R+
Sbjct: 186 YGLADEVLARRL 197


>gi|322373950|ref|ZP_08048485.1| Clp protease [Streptococcus sp. C150]
 gi|321277322|gb|EFX54392.1| Clp protease [Streptococcus sp. C150]
          Length = 196

 Score =  198 bits (504), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 94/190 (49%), Positives = 137/190 (72%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  I AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K +  L +I   N G++ E+V    +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRNNLEQILADNSGQSIEKVHIDAERDNWMSAQET 180

Query: 196 CDWGVVDKVL 205
            ++G +D+++
Sbjct: 181 LEYGFIDEIM 190


>gi|319946500|ref|ZP_08020736.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           australis ATCC 700641]
 gi|319747331|gb|EFV99588.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           australis ATCC 700641]
          Length = 196

 Score =  198 bits (504), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 93/190 (48%), Positives = 137/190 (72%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ VTG +ED MA  I AQLLFL+A++  K+I +
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMVTGPVEDQMANSIIAQLLFLDAQDNTKDIYM 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K + RL +I  +N G+T +++    +RD+ M+A E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRHRLEKILAENSGQTLKKIHADAERDNWMTAEET 180

Query: 196 CDWGVVDKVL 205
             +G +D+++
Sbjct: 181 LAYGFIDEIM 190


>gi|124007704|ref|ZP_01692407.1| Clp protease [Microscilla marina ATCC 23134]
 gi|123986826|gb|EAY26598.1| Clp protease [Microscilla marina ATCC 23134]
          Length = 195

 Score =  198 bits (504), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 94/189 (49%), Positives = 135/189 (71%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           + P ++E+     R  D++SRL+ +RI+F+   ++D++A +I AQLLFLE+ + +K+I L
Sbjct: 1   MTPNIIEERPVNFRPIDVFSRLISDRIIFLGTAVDDNVANVITAQLLFLESVDAKKDILL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+ IYDTMQ++ P I+T C G AAS G++LL+ G  G R AL +ARI++
Sbjct: 61  YINSPGGSVYAGLGIYDTMQYVGPDIATICTGMAASFGAVLLTGGAPGKRSALEHARIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A+  V +KR LNEI  K+CGKT E++E   DRD  + A  A +
Sbjct: 121 HQPHGGAQGQASDIEITAKQYVLLKRELNEIIAKHCGKTPEQLEADGDRDFWLKADAAKE 180

Query: 198 WGVVDKVLM 206
           +G++D+VL+
Sbjct: 181 YGLIDEVLV 189


>gi|300772705|ref|ZP_07082575.1| ATP-dependent Clp protease proteolytic subunit [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300761008|gb|EFK57834.1| ATP-dependent Clp protease proteolytic subunit [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 232

 Score =  198 bits (504), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 92/195 (47%), Positives = 142/195 (72%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P +VE+        D++SRL+ +RI+F+   + D +A +I AQLLFL++ + Q++I +
Sbjct: 38  LTPYIVEERQLNVAQMDVFSRLMMDRIIFLGDAVTDQVANIIQAQLLFLQSTDAQRDIQI 97

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+ IYDTMQ+I P ++T C G AASMG++LL AG KG R AL ++R+++
Sbjct: 98  YINSPGGSVYAGLGIYDTMQYISPDVATICTGMAASMGAVLLVAGAKGKRAALKHSRVMI 157

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  G A+D+E + ++++K+K  L  I  ++ G++YE VEK+ DRD+ M A+EA +
Sbjct: 158 HQPSGGAQGVAADMEINLREMLKLKEELYTIIAEHSGQSYEWVEKSSDRDYWMRAAEAKE 217

Query: 198 WGVVDKVLMSRIDIE 212
           +G+VD+VL S+ +I+
Sbjct: 218 FGMVDEVLSSKKEIK 232


>gi|126348113|emb|CAJ89834.1| putative ATP-dependent Clp protease proteolytic subunit 2
           [Streptomyces ambofaciens ATCC 23877]
          Length = 200

 Score =  198 bits (504), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 93/192 (48%), Positives = 137/192 (71%), Gaps = 1/192 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVE+T +GERSYD++SRLL ERI+F+  +I+D +A ++ AQLL LE+  P+ EI++Y
Sbjct: 6   IPSVVERTPQGERSYDVFSRLLSERIIFLGTEIDDGVANVVIAQLLHLESSAPESEIAVY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  T+ MAIYDTM F++ PISTFC+GQAAS  ++LL+ G+ G RF L +AR+LL 
Sbjct: 66  INSPGGSFTSLMAIYDTMTFVQAPISTFCVGQAASTAAVLLAGGDPGRRFVLEHARVLLG 125

Query: 139 QP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP SGG  G  SD+   A+++V+I+ ++ E+  ++       +   +DRD + SA EA  
Sbjct: 126 QPASGGRQGTVSDLALQAKEMVRIRAQVEEVLARHTHHDVTTLRADMDRDKVFSAEEAVA 185

Query: 198 WGVVDKVLMSRI 209
           +G+ D+VL  R+
Sbjct: 186 YGLADEVLGRRL 197


>gi|297571128|ref|YP_003696902.1| endopeptidase Clp [Arcanobacterium haemolyticum DSM 20595]
 gi|296931475|gb|ADH92283.1| Endopeptidase Clp [Arcanobacterium haemolyticum DSM 20595]
          Length = 238

 Score =  198 bits (504), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 97/203 (47%), Positives = 141/203 (69%), Gaps = 1/203 (0%)

Query: 4   EGCAKKDSEDVFLGLVPMVVEQTNRGERSYD-IYSRLLKERIVFVTGQIEDHMATLICAQ 62
           E   K+ +E  ++   P +   ++ G    D IY+RLLKERI+++  Q++D  A +ICAQ
Sbjct: 14  EARHKRHNEGEYVTTTPQLAGGSSNGLGLGDSIYNRLLKERIIWLGDQVKDENANMICAQ 73

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           LL L AE+P+K+I LYINSPGG VTAGMAI+DTMQ+IKP ++T  MG AASMG  LL+AG
Sbjct: 74  LLLLAAEDPEKDIYLYINSPGGSVTAGMAIFDTMQYIKPDVATVGMGLAASMGQFLLTAG 133

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
            KG R+  P+ R+L+HQP GG  G A++I  +A  I+++K+ L+E+  K+ GK+ E++  
Sbjct: 134 AKGKRYITPHTRVLMHQPLGGAGGTATEIRINADLILQMKQELSELNAKHTGKSVEQILV 193

Query: 183 TLDRDHIMSASEACDWGVVDKVL 205
             DRDH  +A EA ++G VD ++
Sbjct: 194 DSDRDHWFTAREALEYGFVDHII 216


>gi|225858557|ref|YP_002740067.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae 70585]
 gi|254763802|sp|C1C691|CLPP_STRP7 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|225721123|gb|ACO16977.1| Clp protease [Streptococcus pneumoniae 70585]
          Length = 196

 Score =  198 bits (504), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 93/190 (48%), Positives = 137/190 (72%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED MA  + AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDSMANSVIAQLLFLDAQDSTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K +  L +I  +N G++ E+V    +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRNTLEKILAENSGQSMEKVHADAERDNWMSAQET 180

Query: 196 CDWGVVDKVL 205
            ++G +D+++
Sbjct: 181 LEYGFIDEIM 190


>gi|227538076|ref|ZP_03968125.1| endopeptidase Clp [Sphingobacterium spiritivorum ATCC 33300]
 gi|227242152|gb|EEI92167.1| endopeptidase Clp [Sphingobacterium spiritivorum ATCC 33300]
          Length = 232

 Score =  198 bits (504), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 92/195 (47%), Positives = 142/195 (72%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P +VE+        D++SRL+ +RI+F+   + D +A +I AQLLFL++ + Q++I +
Sbjct: 38  LTPYIVEERQLNVAQMDVFSRLMMDRIIFLGDAVTDQVANIIQAQLLFLQSTDAQRDIQI 97

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+ IYDTMQ+I P ++T C G AASMG++LL AG KG R AL ++R+++
Sbjct: 98  YINSPGGSVYAGLGIYDTMQYISPDVATICTGMAASMGAVLLVAGAKGKRTALKHSRVMI 157

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  G A+D+E + ++++K+K  L  I  ++ G++YE VEK+ DRD+ M A+EA +
Sbjct: 158 HQPSGGAQGVAADMEINLREMLKLKEELYTIIAEHSGQSYEWVEKSSDRDYWMRAAEAKE 217

Query: 198 WGVVDKVLMSRIDIE 212
           +G+VD+VL S+ +I+
Sbjct: 218 FGMVDEVLSSKKEIK 232


>gi|303236896|ref|ZP_07323475.1| Clp protease [Prevotella disiens FB035-09AN]
 gi|302483064|gb|EFL46080.1| Clp protease [Prevotella disiens FB035-09AN]
          Length = 228

 Score =  198 bits (504), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 90/191 (47%), Positives = 140/191 (73%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P ++E+        D++SRL+ +RI+F+  QI+D+ A  + AQLL+L++ +P K+IS+
Sbjct: 37  LNPYILEERQLNVTQMDVFSRLMMDRIIFLGTQIDDYTANTLQAQLLYLDSVDPGKDISI 96

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+ IYDTMQFI   ++T C G AASMG++LL AG++G R ALP++R+++
Sbjct: 97  YINSPGGSVTAGLGIYDTMQFITSDVATICTGMAASMGAVLLVAGQEGKRSALPHSRVMI 156

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I+K K+ L  I   +  ++YE+V +  DR++ M+A EA +
Sbjct: 157 HQPLGGVQGQASDIEIEAKEILKFKKELYTIISNHSHQSYEKVYQDSDRNYWMTAEEAKE 216

Query: 198 WGVVDKVLMSR 208
           +G++D++L+ +
Sbjct: 217 YGMIDQILIRK 227


>gi|312140361|ref|YP_004007697.1| clp peptidase proteolytic subunit 1 clpp1 [Rhodococcus equi 103S]
 gi|311889700|emb|CBH49017.1| Clp peptidase proteolytic subunit 1 ClpP1 [Rhodococcus equi 103S]
          Length = 202

 Score =  198 bits (504), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 94/186 (50%), Positives = 128/186 (68%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P +   T+    S  +Y RLL+ERI+F+  Q++D +A  +CAQ+L L AE+P ++I+LYI
Sbjct: 6   PAMTSATSGLNLSDSVYERLLRERIIFLGTQVDDDIANKLCAQILLLSAEDPTRDINLYI 65

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VTAGMAIYDTMQF +  ++TF MG AASMG  LLSAG KG R+ALP+ARI++HQ
Sbjct: 66  NSPGGSVTAGMAIYDTMQFAECDVATFGMGLAASMGQFLLSAGTKGKRYALPHARIMMHQ 125

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           PS G  G ASDI   A+     KR + E+  ++ G+T E++    DRD   +A EA ++G
Sbjct: 126 PSAGIGGTASDIAIMAEQFAHTKREMAELIAEHTGQTVEQITADSDRDRWFTAKEALEYG 185

Query: 200 VVDKVL 205
            VD V+
Sbjct: 186 FVDHVV 191


>gi|298346553|ref|YP_003719240.1| endopeptidase Clp [Mobiluncus curtisii ATCC 43063]
 gi|304389729|ref|ZP_07371688.1| ATP-dependent Clp protease proteolytic subunit [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|315655110|ref|ZP_07908012.1| ATP-dependent Clp protease, protease subunit [Mobiluncus curtisii
           ATCC 51333]
 gi|315657032|ref|ZP_07909917.1| ATP-dependent Clp protease, protease subunit [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
 gi|298236614|gb|ADI67746.1| endopeptidase Clp [Mobiluncus curtisii ATCC 43063]
 gi|304326905|gb|EFL94144.1| ATP-dependent Clp protease proteolytic subunit [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|315490591|gb|EFU80214.1| ATP-dependent Clp protease, protease subunit [Mobiluncus curtisii
           ATCC 51333]
 gi|315492424|gb|EFU82030.1| ATP-dependent Clp protease, protease subunit [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
          Length = 202

 Score =  198 bits (504), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 97/196 (49%), Positives = 129/196 (65%), Gaps = 6/196 (3%)

Query: 27  NRGERSYD------IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           NR E + D      IY RLLKERI+++  ++    A  ICAQ+L L AE+P  +I LYIN
Sbjct: 5   NRDEDTPDVPTGGFIYKRLLKERIIWLGDEVSQENANAICAQMLLLAAEDPDSDIYLYIN 64

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGG VTAGMAIYDTMQ++KP + T  MG AASMG  LL+AG KG RFA P+ARIL+HQP
Sbjct: 65  SPGGSVTAGMAIYDTMQYVKPDVVTVAMGMAASMGQFLLTAGTKGKRFATPHARILMHQP 124

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            GG  G AS++  +A  I+ +K  L +I  +  G T EE+ +  DRDH  +A EA ++G 
Sbjct: 125 LGGVQGTASEVRINADLILAMKHELAQITAERTGHTLEEITRDADRDHWFTAQEALEYGF 184

Query: 201 VDKVLMSRIDIEEKSK 216
           +D V+ S   ++  +K
Sbjct: 185 IDAVVESAAAVQSSNK 200


>gi|312864716|ref|ZP_07724947.1| endopeptidase Clp [Streptococcus downei F0415]
 gi|311099843|gb|EFQ58056.1| endopeptidase Clp [Streptococcus downei F0415]
          Length = 196

 Score =  198 bits (503), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 93/190 (48%), Positives = 137/190 (72%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RIV +TG +ED+MA  I AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIVMLTGPVEDNMANSIIAQLLFLDAQDSSKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LP+A  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGAKGKRFMLPHAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q SD+   A+ +++ +  L +I   N G+T +++    +RD+ M+A E 
Sbjct: 121 HQPMGGTGGGTQQSDMAIAAEHLLQTRETLEKILADNSGQTLKKIHADAERDNWMTAKET 180

Query: 196 CDWGVVDKVL 205
            D+G +D+++
Sbjct: 181 LDYGFIDEIM 190


>gi|55820449|ref|YP_138891.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           thermophilus LMG 18311]
 gi|55822333|ref|YP_140774.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           thermophilus CNRZ1066]
 gi|116627271|ref|YP_819890.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           thermophilus LMD-9]
 gi|67460179|sp|Q5M1A8|CLPP_STRT1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|67460181|sp|Q5M5U4|CLPP_STRT2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|122268126|sp|Q03M78|CLPP_STRTD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|55736434|gb|AAV60076.1| ATP-dependent Clp protease, proteolytic subunit [Streptococcus
           thermophilus LMG 18311]
 gi|55738318|gb|AAV61959.1| ATP-dependent Clp protease, proteolytic subunit [Streptococcus
           thermophilus CNRZ1066]
 gi|116100548|gb|ABJ65694.1| ATP-dependent Clp protease proteolytic subunit ClpP [Streptococcus
           thermophilus LMD-9]
 gi|312277759|gb|ADQ62416.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           thermophilus ND03]
          Length = 196

 Score =  198 bits (503), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 95/190 (50%), Positives = 136/190 (71%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG IED+MA  I AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPIEDNMANSIIAQLLFLDAQDNTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K +  L +I   N G+  E+V    +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRNNLEQILADNSGQPIEKVHVDAERDNWMSAQET 180

Query: 196 CDWGVVDKVL 205
            ++G +D+++
Sbjct: 181 LEYGFIDEIM 190


>gi|227503044|ref|ZP_03933093.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           accolens ATCC 49725]
 gi|306836723|ref|ZP_07469686.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           accolens ATCC 49726]
 gi|227076105|gb|EEI14068.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           accolens ATCC 49725]
 gi|304567401|gb|EFM43003.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           accolens ATCC 49726]
          Length = 203

 Score =  198 bits (503), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 91/173 (52%), Positives = 126/173 (72%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL ERI+F+  Q++D +A  +CAQ+L L AE+P ++ISLYINSPGG VTAGMAIYD
Sbjct: 24  VYERLLHERIIFLGTQVDDEIANKLCAQILLLSAEDPTRDISLYINSPGGSVTAGMAIYD 83

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM++    IST+ MG AASMG  LLS G KG R+ALP+ARI++HQPS G  G A+DI   
Sbjct: 84  TMKYSPCDISTYGMGLAASMGQFLLSGGTKGKRYALPHARIMMHQPSAGVGGTAADIAIQ 143

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+   + KR + E+  ++ G+T+E++ K  DRD  M+A +A ++G+VD V+ S
Sbjct: 144 AEQFAQTKREMAELIAEHTGQTFEQITKDSDRDRWMTAQQAKEYGIVDHVIES 196


>gi|302542937|ref|ZP_07295279.1| Clp protease [Streptomyces hygroscopicus ATCC 53653]
 gi|302460555|gb|EFL23648.1| Clp protease [Streptomyces himastatinicus ATCC 53653]
          Length = 201

 Score =  198 bits (503), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 90/192 (46%), Positives = 138/192 (71%), Gaps = 1/192 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVE+T +GER+YDIYSRLL ERI+F+  +I+D +A ++ AQLL LE+  P++EI++Y
Sbjct: 6   IPTVVERTTQGERAYDIYSRLLSERIIFLGTEIDDGVANVVIAQLLHLESSGPEQEIAIY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  T+ MAIYDTM F+  PISTFC+GQAAS  ++LL+ G+ G RF L ++R+LL 
Sbjct: 66  INSPGGSYTSLMAIYDTMTFVTAPISTFCVGQAASTAAVLLAGGDPGRRFVLEHSRVLLG 125

Query: 139 QP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP +GG  G  SD+   A+++++I+ ++ E+  ++      ++   +DRD + +A EA  
Sbjct: 126 QPATGGARGTVSDLSLQAKEMLRIRAQVEEVLSRHTPHDVAKLRADMDRDRVFTAEEAVT 185

Query: 198 WGVVDKVLMSRI 209
           +G+ D+VL  R+
Sbjct: 186 YGLADEVLSRRL 197


>gi|320534808|ref|ZP_08035227.1| Clp protease [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320132987|gb|EFW25516.1| Clp protease [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 212

 Score =  197 bits (502), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 94/181 (51%), Positives = 129/181 (71%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IY+RLLKERI+++  ++ D  A  ICAQ+L L AE+P+++I LYINSPGG VTAGMAI D
Sbjct: 29  IYNRLLKERIIWLGSEVRDDNANAICAQMLLLAAEDPERDIYLYINSPGGSVTAGMAILD 88

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM++++P ++T   G AASMG  LLSAG KG R+  P+AR+L+HQPSGG  G A+DI  +
Sbjct: 89  TMEYVQPDVATVATGLAASMGQHLLSAGAKGKRYLTPHARVLMHQPSGGAGGSATDIRIN 148

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           A  I+K+K+ L EI   N G T EE+    DRDH  SA EA ++G VD ++ S  +I ++
Sbjct: 149 ADLIIKMKQELAEITAANTGHTVEEIIADSDRDHWFSAQEALEYGFVDHIVRSSREIGKQ 208

Query: 215 S 215
           +
Sbjct: 209 N 209


>gi|307706962|ref|ZP_07643761.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           mitis SK321]
 gi|307617676|gb|EFN96844.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           mitis SK321]
          Length = 196

 Score =  197 bits (502), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 93/190 (48%), Positives = 138/190 (72%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K +  L +I  +N G++ E+V    +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRNILEKILAENSGQSIEKVHADAERDNWMSAQET 180

Query: 196 CDWGVVDKVL 205
            ++G +D+++
Sbjct: 181 LEYGFIDEIM 190


>gi|227495366|ref|ZP_03925682.1| endopeptidase Clp [Actinomyces coleocanis DSM 15436]
 gi|226831120|gb|EEH63503.1| endopeptidase Clp [Actinomyces coleocanis DSM 15436]
          Length = 205

 Score =  197 bits (502), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 93/171 (54%), Positives = 122/171 (71%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +++RLLKERI+++ G++ D  A  ICAQ+L L AE+P K+I LYINSPGG VTAGMAIYD
Sbjct: 25  VFNRLLKERIIWLGGEVRDENANQICAQMLLLAAEDPDKDIYLYINSPGGSVTAGMAIYD 84

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQFIKP + T   G AASMG  LL+AG KG R+A P+ARILLHQP GG  G  ++I  +
Sbjct: 85  TMQFIKPDVVTVATGIAASMGQFLLTAGAKGKRYATPHARILLHQPLGGVGGTTTEIRIN 144

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A  I+++KR L EI  +  GKT E++    DRDH  +A EA ++G  D ++
Sbjct: 145 ADLILQMKRELAEITAERTGKTVEQIHADADRDHWYTAQEALEYGFFDHIV 195


>gi|108935916|sp|Q2JDQ8|CLPP2_FRASC RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
          Length = 217

 Score =  197 bits (502), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 100/191 (52%), Positives = 143/191 (74%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P ++E+T+RGE   D YS+LLKERIVF+  QI+D  A  + AQLLFLE+E+P ++IS+
Sbjct: 18  VLPNIIEKTSRGEYGMDPYSKLLKERIVFLGVQIDDVSANDVMAQLLFLESEDPDRDISI 77

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+  AIYDTMQF++P IST CMGQAAS  ++LL+AG  G RFAL N+RIL+
Sbjct: 78  YINSPGGSFTSLTAIYDTMQFVRPDISTICMGQAASAAAVLLAAGTPGKRFALENSRILI 137

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPS    GQ+SDIE  A++I++++  L  +   + GK  E++ K ++RD I SA EA +
Sbjct: 138 HQPSAQGEGQSSDIEIQAREILRMRSLLERMLAVHTGKKEEDIRKDIERDKIFSADEAKE 197

Query: 198 WGVVDKVLMSR 208
           +G++D+V+ +R
Sbjct: 198 YGLIDEVIKTR 208


>gi|154509334|ref|ZP_02044976.1| hypothetical protein ACTODO_01859 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798968|gb|EDN81388.1| hypothetical protein ACTODO_01859 [Actinomyces odontolyticus ATCC
           17982]
          Length = 216

 Score =  197 bits (502), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 95/182 (52%), Positives = 126/182 (69%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLLKERI+++ G++ D  A +ICAQLL L AE+P ++I LYINSPGG VTAGMAIYD
Sbjct: 34  VYQRLLKERIIWLGGEVRDENANVICAQLLLLAAEDPDRDIYLYINSPGGSVTAGMAIYD 93

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ+IKP + T  MG AASMG  LL+AG  G R+  P+ R+LLHQP GG  G A++I  +
Sbjct: 94  TMQYIKPDVVTVGMGMAASMGQFLLTAGAPGKRYITPHTRVLLHQPLGGAGGSATEIRIN 153

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           A  I+ +K+ L  I     GKT E+VE   DRDH  +A EA ++G VD+V+ S  +I  +
Sbjct: 154 ADLILGMKKELAAITASRTGKTVEQVEADGDRDHWFTAQEALEYGFVDRVIDSPQEIGTR 213

Query: 215 SK 216
            +
Sbjct: 214 GE 215


>gi|269955919|ref|YP_003325708.1| endopeptidase Clp [Xylanimonas cellulosilytica DSM 15894]
 gi|269304600|gb|ACZ30150.1| Endopeptidase Clp [Xylanimonas cellulosilytica DSM 15894]
          Length = 214

 Score =  197 bits (502), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 90/171 (52%), Positives = 125/171 (73%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IY+RLLKERI+++  ++ D  A  ICAQ++ L AE+P K+I LYINSPGG +TAGMAIYD
Sbjct: 27  IYNRLLKERIIWLGSEVRDENANAICAQMMLLAAEDPDKDIWLYINSPGGSITAGMAIYD 86

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQFI+P ++T  MG AASMG  LLS+G KG R+A P+AR+++HQPSGG  G A+D+  +
Sbjct: 87  TMQFIQPDVATVAMGMAASMGQFLLSSGAKGKRYATPHARVMMHQPSGGIGGTATDVRIN 146

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           AQ I+ +K  L E+  +  GK  E++ K  DRD   +A+EA ++G +D V+
Sbjct: 147 AQLIMHMKTVLAELTAEQTGKPLEQILKDNDRDSWFTATEALEYGFIDHVV 197


>gi|300859022|ref|YP_003784005.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686476|gb|ADK29398.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206721|gb|ADL11063.1| ATP-dependent Clp protease proteolytic subunit 2 [Corynebacterium
           pseudotuberculosis C231]
 gi|302331275|gb|ADL21469.1| ATP-dependent Clp protease proteolytic subunit 2 [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276964|gb|ADO26863.1| ATP-dependent Clp protease proteolytic subunit 2 [Corynebacterium
           pseudotuberculosis I19]
          Length = 199

 Score =  197 bits (502), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 90/176 (51%), Positives = 128/176 (72%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           S  +Y RLL+ERI+F+  Q++D +A  +CAQ+L L AE+P ++ISLYINSPGG VTAGMA
Sbjct: 17  SDSVYERLLRERIIFLGTQVDDEIANKLCAQILLLSAEDPNRDISLYINSPGGSVTAGMA 76

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYDTM++    I+T+ MG AASMG  LLS G KG R+ALP+ARI++HQPS G  G A+DI
Sbjct: 77  IYDTMKYSPCDIATYGMGLAASMGQFLLSGGTKGKRYALPHARIMMHQPSAGVGGTAADI 136

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
              A+   + KR + E+  ++ G+T+E++ K  DRD   +A++A ++G+VD V+ S
Sbjct: 137 AIQAEQFAQTKREMAELIAEHTGQTFEQITKDSDRDRWFTAAQAKEYGIVDHVIAS 192


>gi|111221349|ref|YP_712143.1| ATP-dependent Clp protease proteolytic subunit [Frankia alni
           ACN14a]
 gi|111148881|emb|CAJ60560.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
           [Frankia alni ACN14a]
          Length = 226

 Score =  197 bits (502), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 99/191 (51%), Positives = 143/191 (74%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P ++E+T+RGE   D YS+LLKERIVF+  QI+D  A  + AQLLFLE+E+P ++IS+
Sbjct: 27  VLPNIIEKTSRGEYGMDPYSKLLKERIVFLGVQIDDVSANDVMAQLLFLESEDPDRDISI 86

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+  AIYDTMQF++P IST CMGQAAS  ++LL+AG  G RFAL N+RIL+
Sbjct: 87  YINSPGGSFTSLTAIYDTMQFVRPDISTICMGQAASAAAVLLAAGTPGKRFALENSRILI 146

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPS    GQ+SDIE  A++I++++  L  +   + G+  E++ K ++RD I SA EA +
Sbjct: 147 HQPSAQGEGQSSDIEIQAREILRMRSLLERMLATHTGRKEEDIRKDIERDKIFSADEAKE 206

Query: 198 WGVVDKVLMSR 208
           +G++D+V+ +R
Sbjct: 207 YGLIDEVIKTR 217


>gi|86739913|ref|YP_480313.1| ATP-dependent Clp protease proteolytic subunit [Frankia sp. CcI3]
 gi|86566775|gb|ABD10584.1| ATP-dependent Clp protease proteolytic subunit ClpP [Frankia sp.
           CcI3]
          Length = 226

 Score =  197 bits (502), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 100/191 (52%), Positives = 143/191 (74%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P ++E+T+RGE   D YS+LLKERIVF+  QI+D  A  + AQLLFLE+E+P ++IS+
Sbjct: 27  VLPNIIEKTSRGEYGMDPYSKLLKERIVFLGVQIDDVSANDVMAQLLFLESEDPDRDISI 86

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+  AIYDTMQF++P IST CMGQAAS  ++LL+AG  G RFAL N+RIL+
Sbjct: 87  YINSPGGSFTSLTAIYDTMQFVRPDISTICMGQAASAAAVLLAAGTPGKRFALENSRILI 146

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPS    GQ+SDIE  A++I++++  L  +   + GK  E++ K ++RD I SA EA +
Sbjct: 147 HQPSAQGEGQSSDIEIQAREILRMRSLLERMLAVHTGKKEEDIRKDIERDKIFSADEAKE 206

Query: 198 WGVVDKVLMSR 208
           +G++D+V+ +R
Sbjct: 207 YGLIDEVIKTR 217


>gi|309790148|ref|ZP_07684720.1| endopeptidase Clp [Oscillochloris trichoides DG6]
 gi|308227733|gb|EFO81389.1| endopeptidase Clp [Oscillochloris trichoides DG6]
          Length = 215

 Score =  197 bits (501), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 90/194 (46%), Positives = 142/194 (73%), Gaps = 1/194 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+PMV+E ++RGER++DIYSRLLKERI+ +   IED +A LI AQLLFL++++P ++I L
Sbjct: 17  LIPMVIESSSRGERAFDIYSRLLKERIIILGTPIEDQIANLIVAQLLFLDSDDPDRDIWL 76

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TAG+AIYDTM+ I+  ++T C+G A SM + +L+ G KG R++LP++ I +
Sbjct: 77  YINSPGGSITAGLAIYDTMRHIRANVATVCVGMAGSMATPILAGGAKGKRYSLPHSTIHM 136

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           H   GG  G A D+E  A+++++ ++ + E+   + G+T E + K  DRD  M+  +A +
Sbjct: 137 HPAGGGARGYAPDVEIMARELLREQQLIRELLATDTGQTIERIAKDFDRDLFMTPIQAKE 196

Query: 198 WGVVDKVLMSRIDI 211
           +G++D++L +R DI
Sbjct: 197 YGIIDEIL-TREDI 209


>gi|226307302|ref|YP_002767262.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rhodococcus
           erythropolis PR4]
 gi|229493230|ref|ZP_04387022.1| Clp protease [Rhodococcus erythropolis SK121]
 gi|226186419|dbj|BAH34523.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rhodococcus
           erythropolis PR4]
 gi|229319961|gb|EEN85790.1| Clp protease [Rhodococcus erythropolis SK121]
          Length = 208

 Score =  197 bits (501), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 95/186 (51%), Positives = 127/186 (68%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P +   T     S  +Y RLL+ERI+F+  Q++D +A  +CAQ+L L AE+P ++ISLYI
Sbjct: 12  PAMTSATAGLNLSDSVYERLLRERIIFLGTQVDDDIANKLCAQILLLSAEDPTRDISLYI 71

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VTAGMAI+DTMQF +  I+TF MG AASMG  LLSAG KG R+ALP+ARI++HQ
Sbjct: 72  NSPGGSVTAGMAIFDTMQFAECDIATFGMGLAASMGQFLLSAGTKGKRYALPHARIMMHQ 131

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           PS G  G ASDI   A+     KR + E+  ++ G+T E++    DRD   +A EA ++G
Sbjct: 132 PSAGIGGSASDIAIMAEQFKHTKREMAELIAQHTGQTVEQITADSDRDRWFTAKEALEYG 191

Query: 200 VVDKVL 205
            VD V+
Sbjct: 192 FVDHVV 197


>gi|25008291|sp|Q8NN01|CLPP2_CORGL RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|21325183|dbj|BAB99805.1| Protease subunit of ATP-dependent Clp proteases [Corynebacterium
           glutamicum ATCC 13032]
          Length = 201

 Score =  197 bits (501), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 90/172 (52%), Positives = 124/172 (72%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D++ RLL ERI+F+  Q++D +A  +CAQ+L L AE+P ++ISLYINSPGG VTAGMAIY
Sbjct: 21  DVFDRLLSERIIFLGSQVDDEIANKLCAQILLLSAEDPTRDISLYINSPGGSVTAGMAIY 80

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           DTM++    I+T+ MG AASMG  LLS G KG RFALP+ARI++HQPS G  G A+DI  
Sbjct: 81  DTMKYSPCDIATYGMGLAASMGQFLLSGGTKGKRFALPHARIMMHQPSAGVGGTAADIAI 140

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            A+     KR + ++  ++ G+T+E++ K  DRD   +A EA D+G+VD V+
Sbjct: 141 QAEQFAATKREMAQLIAEHTGQTFEQISKDSDRDRWFTAQEAKDYGLVDHVI 192


>gi|228476630|ref|ZP_04061312.1| Clp protease [Streptococcus salivarius SK126]
 gi|228251825|gb|EEK10890.1| Clp protease [Streptococcus salivarius SK126]
          Length = 196

 Score =  197 bits (501), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 94/190 (49%), Positives = 136/190 (71%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  I AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K +  L +I   N G+  E+V    +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRNNLEQILADNSGQPIEKVHVDAERDNWMSAQET 180

Query: 196 CDWGVVDKVL 205
            ++G +D+++
Sbjct: 181 LEYGFIDEIM 190


>gi|293189652|ref|ZP_06608369.1| Clp protease [Actinomyces odontolyticus F0309]
 gi|292821390|gb|EFF80332.1| Clp protease [Actinomyces odontolyticus F0309]
          Length = 216

 Score =  197 bits (501), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 95/182 (52%), Positives = 126/182 (69%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLLKERI+++ G++ D  A +ICAQLL L AE+P ++I LYINSPGG VTAGMAIYD
Sbjct: 34  VYQRLLKERIIWLGGEVRDDNANVICAQLLLLAAEDPDRDIYLYINSPGGSVTAGMAIYD 93

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ+IKP + T  MG AASMG  LL+AG  G R+  P+ R+LLHQP GG  G A++I  +
Sbjct: 94  TMQYIKPDVVTVGMGMAASMGQFLLTAGAPGKRYITPHTRVLLHQPLGGAGGSATEIRIN 153

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           A  I+ +K+ L  I     GKT E+VE   DRDH  +A EA ++G VD+V+ S  +I  +
Sbjct: 154 ADLILGMKKELASITAARTGKTVEQVEADGDRDHWFTAQEALEYGFVDRVIDSPQEIGTR 213

Query: 215 SK 216
            +
Sbjct: 214 GE 215


>gi|4098214|gb|AAD09579.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter
           pylori]
          Length = 159

 Score =  197 bits (501), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 89/158 (56%), Positives = 123/158 (77%)

Query: 52  EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQA 111
            D +A+ I AQLLFLEAE+P+K+I LYINSPGGV+T+G++IYDTM FI+P +ST C+GQA
Sbjct: 1   NDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQA 60

Query: 112 ASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVK 171
           ASMG+ LLS G KG RF+LP++RI++HQP GG  GQASDIE  + +I+++K  +N I  +
Sbjct: 61  ASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQ 120

Query: 172 NCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           N G++ E++ K  DRD  MSA EA ++G++DKVL   +
Sbjct: 121 NSGQSLEQIAKDTDRDFYMSAKEAKEYGLIDKVLQKNV 158


>gi|325104589|ref|YP_004274243.1| Endopeptidase Clp [Pedobacter saltans DSM 12145]
 gi|324973437|gb|ADY52421.1| Endopeptidase Clp [Pedobacter saltans DSM 12145]
          Length = 246

 Score =  197 bits (501), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 91/188 (48%), Positives = 137/188 (72%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           + P ++E+        D++SRL+ +RI+F+   I D  A +I AQLLFL++ + +++I +
Sbjct: 50  MTPYIIEERQLNVAQMDVFSRLMMDRIIFLGDAIYDQNANIIQAQLLFLQSTDAKRDIQI 109

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+ IYDTMQFI P ++T C G AASMG++L+ AG KG R ALP+ARI++
Sbjct: 110 YINSPGGSVYAGLGIYDTMQFISPDVATICTGMAASMGAVLMCAGAKGKRAALPHARIMI 169

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  G A+D+E + ++++K+K+ L +I  K+ G++YE VE++ DRD+ M A EA  
Sbjct: 170 HQPSGGAQGVAADMEINLREMLKLKQELYDIISKHSGQSYEWVERSSDRDYWMKAEEAKH 229

Query: 198 WGVVDKVL 205
           +G+VD+VL
Sbjct: 230 YGMVDEVL 237


>gi|218245805|ref|YP_002371176.1| ATP-dependent Clp protease proteolytic subunit [Cyanothece sp. PCC
           8801]
 gi|34222618|sp|Q93AD7|CLPP_SYNP8 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|16506757|gb|AAL23931.1|AF423175_1 putative ATP-dependent Clp proteinase [Cyanothece sp. PCC 8801]
 gi|218166283|gb|ACK65020.1| Endopeptidase Clp [Cyanothece sp. PCC 8801]
          Length = 199

 Score =  197 bits (501), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 96/180 (53%), Positives = 133/180 (73%), Gaps = 1/180 (0%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ER  DIY+RL +ERI+F+  ++ D +A  I A LL+L++E+P K I LYINSPGG VTAG
Sbjct: 18  ERWIDIYTRLSQERIIFLGQEVTDGLANRIVAFLLYLDSEDPGKPIYLYINSPGGSVTAG 77

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS-GQA 148
           MAIYDTMQ+IK  + T C+G AASMG+ LL++G  G R ALP+ARI++HQP GG    QA
Sbjct: 78  MAIYDTMQYIKSDVITICVGLAASMGAFLLASGTPGKRLALPHARIMIHQPMGGTGRRQA 137

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           +DI+  A +I++I+++LNEI     G+T E+++K  DRD+ MSA EA  +G++DKV+  R
Sbjct: 138 TDIQIEANEILRIRQQLNEILAHKTGQTIEKIQKDTDRDYYMSAEEAQAYGLIDKVIEDR 197


>gi|159039408|ref|YP_001538661.1| endopeptidase Clp [Salinispora arenicola CNS-205]
 gi|157918243|gb|ABV99670.1| Endopeptidase Clp [Salinispora arenicola CNS-205]
          Length = 213

 Score =  197 bits (501), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 95/189 (50%), Positives = 127/189 (67%)

Query: 27  NRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVV 86
           N G     +Y+RLLKERI+F+  ++ D +A  ICAQLL L AE+P ++I+L+INSPGG V
Sbjct: 21  NIGNLDDSVYNRLLKERIIFLGSEVTDQVANRICAQLLLLAAEDPDRDINLWINSPGGSV 80

Query: 87  TAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG 146
            +GMAIYDTMQFI   +ST  MG AASMG LLL AG KG R+ALP+ARI++HQPSGG  G
Sbjct: 81  YSGMAIYDTMQFIDNDVSTVAMGMAASMGQLLLCAGTKGKRYALPHARIMMHQPSGGMGG 140

Query: 147 QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
            ASDI   A+ ++  KR   E    + G++  ++E   DRD   +A EA D+G +DKV+ 
Sbjct: 141 TASDIAIQAEQMLYTKRMFQERVAFHTGQSQAQIEADSDRDRWFTAQEAMDYGFIDKVIT 200

Query: 207 SRIDIEEKS 215
               + E +
Sbjct: 201 GAAQVPEGA 209


>gi|19553610|ref|NP_601612.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           glutamicum ATCC 13032]
 gi|62391254|ref|YP_226656.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           glutamicum ATCC 13032]
 gi|145296394|ref|YP_001139215.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           glutamicum R]
 gi|41326594|emb|CAF21076.1| ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT CLPP1
           [Corynebacterium glutamicum ATCC 13032]
 gi|140846314|dbj|BAF55313.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 197

 Score =  197 bits (501), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 90/172 (52%), Positives = 124/172 (72%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D++ RLL ERI+F+  Q++D +A  +CAQ+L L AE+P ++ISLYINSPGG VTAGMAIY
Sbjct: 17  DVFDRLLSERIIFLGSQVDDEIANKLCAQILLLSAEDPTRDISLYINSPGGSVTAGMAIY 76

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           DTM++    I+T+ MG AASMG  LLS G KG RFALP+ARI++HQPS G  G A+DI  
Sbjct: 77  DTMKYSPCDIATYGMGLAASMGQFLLSGGTKGKRFALPHARIMMHQPSAGVGGTAADIAI 136

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            A+     KR + ++  ++ G+T+E++ K  DRD   +A EA D+G+VD V+
Sbjct: 137 QAEQFAATKREMAQLIAEHTGQTFEQISKDSDRDRWFTAQEAKDYGLVDHVI 188


>gi|325676029|ref|ZP_08155712.1| ATP-dependent Clp protease, protease subunit [Rhodococcus equi ATCC
           33707]
 gi|325553267|gb|EGD22946.1| ATP-dependent Clp protease, protease subunit [Rhodococcus equi ATCC
           33707]
          Length = 195

 Score =  197 bits (501), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 92/174 (52%), Positives = 124/174 (71%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           S  +Y RLL+ERI+F+  Q++D +A  +CAQ+L L AE+P ++I+LYINSPGG VTAGMA
Sbjct: 11  SDSVYERLLRERIIFLGTQVDDDIANKLCAQILLLSAEDPTRDINLYINSPGGSVTAGMA 70

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYDTMQF +  ++TF MG AASMG  LLSAG KG R+ALP+ARI++HQPS G  G ASDI
Sbjct: 71  IYDTMQFAECDVATFGMGLAASMGQFLLSAGTKGKRYALPHARIMMHQPSAGIGGTASDI 130

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
              A+     KR + E+  ++ G+T E++    DRD   +A EA ++G VD V+
Sbjct: 131 AIMAEQFAHTKREMAELIAEHTGQTVEQITADSDRDRWFTAKEALEYGFVDHVV 184


>gi|320102927|ref|YP_004178518.1| ATP-dependent Clp protease proteolytic subunit ClpP [Isosphaera
           pallida ATCC 43644]
 gi|319750209|gb|ADV61969.1| ATP-dependent Clp protease proteolytic subunit ClpP [Isosphaera
           pallida ATCC 43644]
          Length = 198

 Score =  197 bits (500), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 89/188 (47%), Positives = 138/188 (73%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP+V+E +   ER  DIYSRLL++RI+ +   I++ ++  + AQLL+L +E+P+ +I LY
Sbjct: 4   VPVVIEGSGPDERVIDIYSRLLRDRIIILGTAIDESVSNSVVAQLLYLASEDPKADIRLY 63

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYD MQ +   ++T+C+GQ ASMGSLLL+AG  G R A+P+ RI++H
Sbjct: 64  INSPGGSVTAGLAIYDMMQSVPCDVATYCIGQCASMGSLLLAAGAAGKRHAMPHGRIMIH 123

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP  G  G A+DI  HA++ +++K++LN IY  + G++ E++E+  DRD  MS  EA ++
Sbjct: 124 QPLAGMEGTATDIMIHAEEFLRMKKQLNGIYNHHTGQSLEKLEQDTDRDRFMSPREAKEY 183

Query: 199 GVVDKVLM 206
           G++D +++
Sbjct: 184 GLIDHIVV 191


>gi|257058851|ref|YP_003136739.1| ATP-dependent Clp protease proteolytic subunit [Cyanothece sp. PCC
           8802]
 gi|256589017|gb|ACU99903.1| Endopeptidase Clp [Cyanothece sp. PCC 8802]
          Length = 199

 Score =  197 bits (500), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 96/180 (53%), Positives = 133/180 (73%), Gaps = 1/180 (0%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ER  DIY+RL +ERI+F+  ++ D +A  I A LL+L++E+P K I LYINSPGG VTAG
Sbjct: 18  ERWIDIYTRLSQERIIFLGQEVTDGLANRIVAFLLYLDSEDPGKPIYLYINSPGGSVTAG 77

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS-GQA 148
           MAIYDTMQ+IK  + T C+G AASMG+ LL++G  G R ALP+ARI++HQP GG    QA
Sbjct: 78  MAIYDTMQYIKSDVITICVGLAASMGAFLLASGTPGKRLALPHARIMIHQPMGGTGRRQA 137

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           +DI+  A +I++I+++LNEI     G+T E+++K  DRD+ MSA EA  +G++DKV+  R
Sbjct: 138 TDIQIEANEILRIRQQLNEILAYKTGQTIEKIQKDTDRDYYMSAEEAQAYGLIDKVIEDR 197


>gi|16331162|ref|NP_441890.1| ATP-dependent Clp protease proteolytic subunit [Synechocystis sp.
           PCC 6803]
 gi|3023511|sp|P74467|CLPP3_SYNY3 RecName: Full=Probable ATP-dependent Clp protease proteolytic
           subunit 3; AltName: Full=Endopeptidase Clp 3
 gi|1653656|dbj|BAA18568.1| ATP-dependent Clp protease proteolytic subunit [Synechocystis sp.
           PCC 6803]
          Length = 202

 Score =  197 bits (500), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 93/177 (52%), Positives = 135/177 (76%), Gaps = 1/177 (0%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ER  DIY+RL +ERI+F+  ++ D +A  I A LL+L++++P K I LYINSPGG VTAG
Sbjct: 18  ERWIDIYTRLSQERIIFLGQEVNDSIANRIVAFLLYLDSDDPSKPIYLYINSPGGSVTAG 77

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS-GQA 148
           MAIYDTMQ+IK  + T C+G AASMG+ LL++G  G R ALP+ARI++HQP GG    QA
Sbjct: 78  MAIYDTMQYIKAEVITICVGLAASMGAFLLASGAPGKRLALPHARIMIHQPMGGTGRRQA 137

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           +DI+  A++I++I+++LNEI  +  G+T E++ K  DRD+ +SA+EA ++G++DKV+
Sbjct: 138 TDIDIEAREILRIRQQLNEIMAQRTGQTVEKIAKDTDRDYFLSAAEAKEYGLIDKVI 194


>gi|227874919|ref|ZP_03993071.1| endopeptidase Clp [Mobiluncus mulieris ATCC 35243]
 gi|227844496|gb|EEJ54653.1| endopeptidase Clp [Mobiluncus mulieris ATCC 35243]
          Length = 206

 Score =  197 bits (500), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 96/189 (50%), Positives = 125/189 (66%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G VP   +       +  IY RLLKERI+++  Q+ +  A  ICAQ+L L AE+P  +I 
Sbjct: 8   GTVPHNAKDDTAAPMNDFIYKRLLKERIIWLGTQVAEENANAICAQMLLLAAEDPDSDIY 67

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGMAIYDTMQ+IKP + T  MG AASMG  LL+AG KG RFA P+ARIL
Sbjct: 68  LYINSPGGSVTAGMAIYDTMQYIKPDVVTVTMGMAASMGQFLLTAGAKGKRFATPHARIL 127

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  G AS++  +A  I+ +K  L +I  +  G T EE+ +  DRDH  +A EA 
Sbjct: 128 MHQPLGGVQGTASEVRINADLILAMKNELAQITAERTGHTLEEITRDADRDHWYTAQEAL 187

Query: 197 DWGVVDKVL 205
           ++G +D V+
Sbjct: 188 EYGFIDAVV 196


>gi|300780629|ref|ZP_07090484.1| endopeptidase Clp [Corynebacterium genitalium ATCC 33030]
 gi|300533615|gb|EFK54675.1| endopeptidase Clp [Corynebacterium genitalium ATCC 33030]
          Length = 193

 Score =  197 bits (500), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 89/171 (52%), Positives = 125/171 (73%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL+ERI+F+  Q++D +A  +CAQ+L L AE+P ++ISLYINSPGG VTAGMAIYD
Sbjct: 14  VYERLLRERIIFLGQQVDDEIANKLCAQILLLSAEDPNRDISLYINSPGGSVTAGMAIYD 73

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM++    I+T+ MG AASMG  LLS G KG RFALP+ARI++HQPS G  G A+DI   
Sbjct: 74  TMKYSPCDIATYGMGLAASMGQFLLSGGTKGKRFALPHARIMMHQPSAGVGGTAADIAIQ 133

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+   + K+ + E+  ++ G+++E++ K  DRD   +A EA D+G+VD V+
Sbjct: 134 AEQFAQTKKEMAELIAEHTGQSFEQITKDSDRDRWFTAQEAKDYGIVDHVI 184


>gi|298207459|ref|YP_003715638.1| ATP-dependent Clp protease proteolytic subunit 2 [Croceibacter
           atlanticus HTCC2559]
 gi|83850095|gb|EAP87963.1| ATP-dependent Clp protease proteolytic subunit 2 [Croceibacter
           atlanticus HTCC2559]
          Length = 224

 Score =  197 bits (500), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 91/190 (47%), Positives = 137/190 (72%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +GL P ++E+       +D++SRL+ +RI+F+   I D +A ++ AQLLFLE+ +  K+I
Sbjct: 32  VGLTPNIIEERQMNIAIFDVFSRLMMDRIIFLGTGINDQVANIVQAQLLFLESTDANKDI 91

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG V AG+ IYDTMQFIKP ++T C G AASMG++LL AG +G R  LP++R+
Sbjct: 92  QIYINSPGGSVYAGLGIYDTMQFIKPDVATICTGMAASMGAVLLCAGAEGKRSGLPHSRV 151

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDIE  A++I+ +K  L +I  K+ G+ Y++V +  DRD+ M A +A
Sbjct: 152 MIHQPLGGAQGQASDIEITAREILTLKEELYKIISKHSGQPYDKVYEDSDRDYWMKADKA 211

Query: 196 CDWGVVDKVL 205
            ++G++D+VL
Sbjct: 212 KEYGMIDEVL 221


>gi|227488326|ref|ZP_03918642.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091736|gb|EEI27048.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 187

 Score =  197 bits (500), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 89/171 (52%), Positives = 124/171 (72%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL+ERI+F+  ++ D +A  +CAQ+L L AE+P ++ISLYINSPGG VTAGMAIYD
Sbjct: 7   VYERLLRERIIFLGSEVNDEIANKLCAQILLLSAEDPTRDISLYINSPGGSVTAGMAIYD 66

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM++    ++T+ MG AASMG  LL+AG KG R+ALP+ARIL+HQPS G  G ASDI   
Sbjct: 67  TMKYAPCDVATYAMGLAASMGQFLLTAGTKGKRYALPHARILMHQPSAGVGGTASDIAIQ 126

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           AQ     K+ ++E+  ++ G+T+E++ K  DRD   +A EA D+G+ D V+
Sbjct: 127 AQQFALTKKEMDELIAEHSGQTFEQISKDSDRDRWFTAEEARDYGLCDHVI 177


>gi|134097946|ref|YP_001103607.1| ATP-dependent Clp protease proteolytic subunit 1 [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291009144|ref|ZP_06567117.1| ATP-dependent Clp protease proteolytic subunit 1 [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133910569|emb|CAM00682.1| ATP-dependent Clp protease proteolytic subunit 1 [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 192

 Score =  197 bits (500), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 92/170 (54%), Positives = 121/170 (71%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL+ERI+ +  Q+ED +A  IC+QL+ L AE+P+++ISLYINSPGG V AGMAIYD
Sbjct: 14  VYERLLRERIIVLGSQVEDSIANQICSQLILLAAEDPERDISLYINSPGGSVPAGMAIYD 73

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ I+P ++T  MG AASMG  LLSAG +G RFALP+ARI++HQPS G  G ASDI   
Sbjct: 74  TMQLIQPDVATVAMGFAASMGQFLLSAGARGKRFALPHARIMMHQPSAGIGGTASDIAIQ 133

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           A+   K KR + E+  +  G+  E++E   DRD   +A EA D+G VD +
Sbjct: 134 AEVFAKNKREMAELIAEQTGQPIEKIEADSDRDKWFTAEEARDYGFVDHI 183


>gi|170077811|ref|YP_001734449.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           PCC 7002]
 gi|169885480|gb|ACA99193.1| Clp protease [Synechococcus sp. PCC 7002]
          Length = 199

 Score =  197 bits (500), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 93/177 (52%), Positives = 132/177 (74%), Gaps = 2/177 (1%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           +IY RL +ERI+F+   + D +A  I A +L+L++E+P K I LYINSPGG VTAG+AIY
Sbjct: 22  NIYDRLYRERIIFLGRGVNDALANQIIAIMLYLDSEDPSKPIYLYINSPGGSVTAGLAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG--QASDI 151
           DTM+ IK  + T C+G AASMG+ LLSAG KG R ALP++RI++HQP GG  G  QA+DI
Sbjct: 82  DTMKHIKSEVVTICVGLAASMGAFLLSAGTKGKRLALPHSRIMIHQPLGGIQGRRQATDI 141

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           +  A++I++IK +LNE+   + G++ E++EK  DRD+ MSA EA ++G++DKV+  R
Sbjct: 142 DIEAKEIIRIKHQLNELMAAHTGQSIEKIEKDTDRDYFMSAQEALEYGLIDKVIEER 198


>gi|306818243|ref|ZP_07451973.1| ATP-dependent Clp protease proteolytic subunit [Mobiluncus mulieris
           ATCC 35239]
 gi|304648982|gb|EFM46277.1| ATP-dependent Clp protease proteolytic subunit [Mobiluncus mulieris
           ATCC 35239]
          Length = 206

 Score =  196 bits (499), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 93/171 (54%), Positives = 120/171 (70%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IY RLLKERI+++  Q+ +  A  ICAQ+L L AE+P  +I LYINSPGG VTAGMAIYD
Sbjct: 26  IYKRLLKERIIWLGTQVAEENANAICAQMLLLAAEDPDSDIYLYINSPGGSVTAGMAIYD 85

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ+IKP + T  MG AASMG  LL+AG KG RFA P+ARIL+HQP GG  G AS++  +
Sbjct: 86  TMQYIKPDVVTVTMGMAASMGQFLLTAGAKGKRFATPHARILMHQPLGGVQGTASEVRIN 145

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A  I+ +K  L +I  +  G T EE+ +  DRDH  +A EA ++G +D V+
Sbjct: 146 ADLILAMKNELAQITAERTGHTLEEITRDADRDHWYTAQEALEYGFIDAVV 196


>gi|269976479|ref|ZP_06183464.1| Clp protease [Mobiluncus mulieris 28-1]
 gi|307701829|ref|ZP_07638843.1| endopeptidase Clp [Mobiluncus mulieris FB024-16]
 gi|269935280|gb|EEZ91829.1| Clp protease [Mobiluncus mulieris 28-1]
 gi|307613087|gb|EFN92342.1| endopeptidase Clp [Mobiluncus mulieris FB024-16]
          Length = 197

 Score =  196 bits (499), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 93/171 (54%), Positives = 120/171 (70%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IY RLLKERI+++  Q+ +  A  ICAQ+L L AE+P  +I LYINSPGG VTAGMAIYD
Sbjct: 17  IYKRLLKERIIWLGTQVAEENANAICAQMLLLAAEDPDSDIYLYINSPGGSVTAGMAIYD 76

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ+IKP + T  MG AASMG  LL+AG KG RFA P+ARIL+HQP GG  G AS++  +
Sbjct: 77  TMQYIKPDVVTVTMGMAASMGQFLLTAGAKGKRFATPHARILMHQPLGGVQGTASEVRIN 136

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A  I+ +K  L +I  +  G T EE+ +  DRDH  +A EA ++G +D V+
Sbjct: 137 ADLILAMKNELAQITAERTGHTLEEITRDADRDHWYTAQEALEYGFIDAVV 187


>gi|67460459|sp|Q5Z063|CLPP2_NOCFA RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|54014808|dbj|BAD56178.1| putative Clp protease proteolytic subunit [Nocardia farcinica IFM
           10152]
          Length = 203

 Score =  196 bits (499), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 93/174 (53%), Positives = 122/174 (70%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           S  +Y RLL+ERI+F+  Q++D +A  +CAQ+L L AE+P ++ISLYINSPGG VTAGMA
Sbjct: 19  SDSVYERLLRERIIFLGTQVDDDIANKLCAQILLLSAEDPTRDISLYINSPGGSVTAGMA 78

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYDTMQF +  I T  MG AASMG  LL+AG KG R+ALP+ARI++HQPS G  G A+DI
Sbjct: 79  IYDTMQFAECDIRTVGMGLAASMGQFLLTAGTKGKRYALPHARIMMHQPSAGIGGSAADI 138

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
              A+     KR LNE+   + GK+ E+V    DRD   +A EA ++G +D V+
Sbjct: 139 AIMAEQFAHTKRELNELQALHTGKSVEQVTADADRDRWFTAQEALEYGFIDHVI 192


>gi|239983580|ref|ZP_04706104.1| ATP-dependent Clp protease proteolytic subunit 2 [Streptomyces
           albus J1074]
 gi|291455392|ref|ZP_06594782.1| ATP-dependent Clp protease proteolytic subunit 2 [Streptomyces
           albus J1074]
 gi|291358341|gb|EFE85243.1| ATP-dependent Clp protease proteolytic subunit 2 [Streptomyces
           albus J1074]
          Length = 200

 Score =  196 bits (499), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 90/191 (47%), Positives = 134/191 (70%), Gaps = 1/191 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVE+T RGER++DIYS LL ERI+F+  +I+D +A ++ AQLL LE+  P +EI+LY
Sbjct: 6   IPTVVERTARGERAFDIYSSLLSERIIFLGTEIDDGVANVVIAQLLHLESVAPDQEIALY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  T+ MA+YDTM F+  P+STFC+GQAAS  ++LL+ G+ G R  L +AR+LL 
Sbjct: 66  INSPGGSYTSLMAVYDTMTFVSAPLSTFCVGQAASTAAVLLAGGDPGRRLILEHARVLLG 125

Query: 139 QP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP SGG  G  SD+   A+++ +++ +  E+  ++ G + E +   +DRD + +A EA  
Sbjct: 126 QPASGGSQGTVSDLTVQAKEVARVRSQTEEVLSRHTGHSVERLRSDMDRDKVFTAEEAVA 185

Query: 198 WGVVDKVLMSR 208
           +G+ D+VL  R
Sbjct: 186 YGLADEVLTRR 196


>gi|238060619|ref|ZP_04605328.1| endopeptidase Clp [Micromonospora sp. ATCC 39149]
 gi|237882430|gb|EEP71258.1| endopeptidase Clp [Micromonospora sp. ATCC 39149]
          Length = 213

 Score =  196 bits (499), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 95/189 (50%), Positives = 126/189 (66%)

Query: 27  NRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVV 86
           N G     +Y+RLLKERI+F+  ++ D +A  ICAQLL L AE+P ++I L+INSPGG V
Sbjct: 21  NIGNLDDSVYNRLLKERIIFLGSEVNDQVANRICAQLLLLAAEDPDRDIFLWINSPGGSV 80

Query: 87  TAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG 146
            +GMAIYDTMQ+I   +ST  MG AASMG LLL AG KG R+ALP+ARI++HQPSGG  G
Sbjct: 81  YSGMAIYDTMQYIDNDVSTVAMGMAASMGQLLLCAGTKGKRYALPHARIMMHQPSGGMGG 140

Query: 147 QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
            ASDI   A+ ++  KR   E    + G+T  ++E   DRD   +A EA D+G +DKV+ 
Sbjct: 141 TASDIAIQAEQMLYTKRMFQERVAFHTGQTQAQIEADSDRDRWFTAQEAMDYGFIDKVIT 200

Query: 207 SRIDIEEKS 215
               + E +
Sbjct: 201 GAAQVPEGA 209


>gi|256824760|ref|YP_003148720.1| ATP-dependent Clp protease proteolytic subunit ClpP [Kytococcus
           sedentarius DSM 20547]
 gi|256688153|gb|ACV05955.1| ATP-dependent Clp protease proteolytic subunit ClpP [Kytococcus
           sedentarius DSM 20547]
          Length = 225

 Score =  196 bits (499), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 93/182 (51%), Positives = 124/182 (68%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IY+RLLKERIVF+   + D  A  ICAQLL L AE+P  +I LYINSPGG VTAGMAI+D
Sbjct: 25  IYNRLLKERIVFLGSDVRDDNANAICAQLLLLSAEDPNADIWLYINSPGGSVTAGMAIFD 84

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM +I   ++T  MG AASMG  LLSAG  G R+A P++R+++HQPSGG  G ASDI+  
Sbjct: 85  TMNWIPNDVATVAMGLAASMGQFLLSAGTPGKRYATPHSRVMMHQPSGGVGGTASDIKIQ 144

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           A+ ++ IKR++ E+  ++ G+T E++    DRD   +A EA D+G VD V  +  D  + 
Sbjct: 145 AEQLLHIKRQMAELIAQHTGQTAEQITLDSDRDRWFTAQEAKDYGFVDHVFQTSTDTHDV 204

Query: 215 SK 216
            K
Sbjct: 205 KK 206


>gi|89889548|ref|ZP_01201059.1| ATP-dependent Clp protease proteolytic subunit 2 [Flavobacteria
           bacterium BBFL7]
 gi|89517821|gb|EAS20477.1| ATP-dependent Clp protease proteolytic subunit 2 [Flavobacteria
           bacterium BBFL7]
          Length = 224

 Score =  196 bits (499), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 92/188 (48%), Positives = 134/188 (71%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P ++E+       +D++SRL+ +RI+F+   + D +A +I AQLLFLE+ +  K+I +
Sbjct: 34  LTPNIIEERQMNIAIFDVFSRLMMDRIIFMGTGVNDQVANIIQAQLLFLESTDANKDIQI 93

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+ IYDTMQFIKP ++T C G AASMG++LL AG  G R ALP++R+++
Sbjct: 94  YINSPGGSVYAGLGIYDTMQFIKPDVATICTGMAASMGAVLLCAGADGKRSALPHSRVMI 153

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQ S G  GQASDIE  A+++VK++  L  I  K+  +TYE+V    DRD+ M A+EA +
Sbjct: 154 HQVSSGAQGQASDIEITAREVVKLREELYTIIAKHSKQTYEKVYADSDRDYWMKAAEAKE 213

Query: 198 WGVVDKVL 205
           +G++D+VL
Sbjct: 214 YGMIDEVL 221


>gi|149369719|ref|ZP_01889571.1| endopeptidase Clp (ATP-dependent Clp protease proteolytic subunit)
           [unidentified eubacterium SCB49]
 gi|149357146|gb|EDM45701.1| endopeptidase Clp (ATP-dependent Clp protease proteolytic subunit)
           [unidentified eubacterium SCB49]
          Length = 226

 Score =  196 bits (499), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 89/190 (46%), Positives = 136/190 (71%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +GL P ++E+      + D++SRL+ +RI+F+   I D +A ++ AQLLFL + +  ++I
Sbjct: 32  VGLTPNIIEERQMNAVAMDVFSRLMMDRIIFLGTGINDQVANIVQAQLLFLASVDATRDI 91

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG V AG+ IYDTMQFI P ++T C G AASMG++LL AGEKG R  L ++R+
Sbjct: 92  QIYINSPGGSVYAGLGIYDTMQFITPDVATICTGMAASMGAVLLCAGEKGKRSGLTHSRV 151

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDIE  A++I+ +K+ L EI  K+ G+ Y++V +  DRD+ M A +A
Sbjct: 152 MIHQPMGGAQGQASDIEITAKEIITLKKELYEIISKHTGQDYDKVYEDSDRDYWMKADKA 211

Query: 196 CDWGVVDKVL 205
            ++G++D++L
Sbjct: 212 LEYGMIDEIL 221


>gi|166368459|ref|YP_001660732.1| ATP-dependent Clp protease proteolytic subunit [Microcystis
           aeruginosa NIES-843]
 gi|159028168|emb|CAO89775.1| clpP [Microcystis aeruginosa PCC 7806]
 gi|166090832|dbj|BAG05540.1| ATP-dependent Clp protease proteolytic subunit [Microcystis
           aeruginosa NIES-843]
          Length = 199

 Score =  196 bits (498), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 94/180 (52%), Positives = 132/180 (73%), Gaps = 1/180 (0%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           E+   IYSRL  ERI+F+  ++ D +A  + AQ+L+L++E+P K I LYINSPGG VTAG
Sbjct: 18  EQWISIYSRLSVERILFLGQEVTDGLANALVAQMLYLDSEDPTKPIYLYINSPGGSVTAG 77

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS-GQA 148
           MAIYDTMQ+IK  + T C+G AASMG+ LL++G  G R ALP+ARI++HQP GG    QA
Sbjct: 78  MAIYDTMQYIKAEVVTICVGLAASMGAFLLASGSPGKRLALPHARIMIHQPMGGTGRRQA 137

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           +DI+  A++I++I+++LNEI     G+T E +EK  DRD+ +SA EA  +G++DKV+  R
Sbjct: 138 TDIDIEAKEILRIRQQLNEIMANRTGQTIERIEKDTDRDYFLSAEEAVAYGLIDKVVEGR 197


>gi|156743343|ref|YP_001433472.1| endopeptidase Clp [Roseiflexus castenholzii DSM 13941]
 gi|156234671|gb|ABU59454.1| Endopeptidase Clp [Roseiflexus castenholzii DSM 13941]
          Length = 203

 Score =  196 bits (498), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 88/190 (46%), Positives = 133/190 (70%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP +VE+T RGERS+D++SRLL+ERI+ +   I+D +A+LI AQLL+L+  +P ++I  Y
Sbjct: 6   VPTIVERTPRGERSWDLFSRLLQERIILLGTPIDDEVASLIVAQLLYLQHTDPDRDIWFY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG V  G+AIYDTM+ I P + T C+G+A SM ++LL+ G +G R+ALPNA I  H
Sbjct: 66  INSPGGSVRDGLAIYDTMKLISPDVCTVCIGRAGSMATILLAGGARGKRYALPNATIHFH 125

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
              GG  G A D+ER  +++++I+   N +  ++ G+T EE+ +   RD  M+A EA ++
Sbjct: 126 PAGGGAEGYAPDMERIVRELLRIQELGNSLLARDTGRTVEEITRDFSRDRFMTAQEAREY 185

Query: 199 GVVDKVLMSR 208
           G +D +L S+
Sbjct: 186 GFIDAILESK 195


>gi|307324650|ref|ZP_07603856.1| Endopeptidase Clp [Streptomyces violaceusniger Tu 4113]
 gi|306889532|gb|EFN20512.1| Endopeptidase Clp [Streptomyces violaceusniger Tu 4113]
          Length = 201

 Score =  196 bits (498), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 91/191 (47%), Positives = 136/191 (71%), Gaps = 1/191 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVE+T +GER+YDIYSRLL ERI+F+  +I+D +A ++ AQLL LE+ + ++EI++Y
Sbjct: 6   IPTVVERTTQGERAYDIYSRLLSERIIFLGTEIDDGVANVVIAQLLHLESSSSEQEIAIY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  T+ MAIYDTM F+  PISTFC+GQAAS  ++LL+ G+ G RF L +AR+LL 
Sbjct: 66  INSPGGSFTSLMAIYDTMTFVSAPISTFCVGQAASTAAVLLAGGDPGRRFVLEHARVLLG 125

Query: 139 QP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP SGG  G  SD+   A+++++I+ ++ E+  ++       +   +DRD + +A EA  
Sbjct: 126 QPVSGGQQGTVSDLSLQAKEMLRIRSQVEEVLARHTPHDAATLRADMDRDKVFTAREAVT 185

Query: 198 WGVVDKVLMSR 208
           +G+ D+VL  R
Sbjct: 186 YGLADEVLSRR 196


>gi|296129240|ref|YP_003636490.1| Endopeptidase Clp [Cellulomonas flavigena DSM 20109]
 gi|296021055|gb|ADG74291.1| Endopeptidase Clp [Cellulomonas flavigena DSM 20109]
          Length = 206

 Score =  196 bits (498), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 88/173 (50%), Positives = 125/173 (72%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IY+RLL+ERI+++  ++ D  A  ICAQ++ L AE+P K+I LYINSPGG +TAGMAIYD
Sbjct: 22  IYNRLLRERIIWLGSEVRDENANAICAQMMLLAAEDPDKDIWLYINSPGGSITAGMAIYD 81

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ+IKP ++T  MG AASMG  LLS+G KG R+A P+AR+++HQPSGG  G A+D+  +
Sbjct: 82  TMQYIKPDVATIAMGMAASMGQFLLSSGTKGKRYATPHARVMMHQPSGGIGGTATDVRIN 141

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A  I+ +K+ L E+  +  GK+ E++    DRD   +A EA ++G +D V+ S
Sbjct: 142 AALILHMKKVLAELIAEQTGKSVEQINADSDRDRWFTAPEALEYGFIDHVVSS 194


>gi|161598446|ref|YP_117542.2| ATP-dependent Clp protease proteolytic subunit [Nocardia farcinica
           IFM 10152]
          Length = 195

 Score =  196 bits (498), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 93/174 (53%), Positives = 122/174 (70%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           S  +Y RLL+ERI+F+  Q++D +A  +CAQ+L L AE+P ++ISLYINSPGG VTAGMA
Sbjct: 11  SDSVYERLLRERIIFLGTQVDDDIANKLCAQILLLSAEDPTRDISLYINSPGGSVTAGMA 70

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYDTMQF +  I T  MG AASMG  LL+AG KG R+ALP+ARI++HQPS G  G A+DI
Sbjct: 71  IYDTMQFAECDIRTVGMGLAASMGQFLLTAGTKGKRYALPHARIMMHQPSAGIGGSAADI 130

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
              A+     KR LNE+   + GK+ E+V    DRD   +A EA ++G +D V+
Sbjct: 131 AIMAEQFAHTKRELNELQALHTGKSVEQVTADADRDRWFTAQEALEYGFIDHVI 184


>gi|38234363|ref|NP_940130.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           diphtheriae NCTC 13129]
 gi|67460484|sp|Q6NFU4|CLPP2_CORDI RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|38200626|emb|CAE50322.1| ATP-dependent Clp protease proteolytic subunit 1 [Corynebacterium
           diphtheriae]
          Length = 199

 Score =  196 bits (498), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 90/176 (51%), Positives = 127/176 (72%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           S  +Y RLL+ERI+F+  Q++D +A  +CAQ+L L AE+P ++ISLYINSPGG VTAGMA
Sbjct: 17  SDSVYERLLRERIIFLGTQVDDEIANKLCAQILLLSAEDPTRDISLYINSPGGSVTAGMA 76

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYDTM++    I+T+ MG AASMG  LLS G KG RFALP+ARI++HQPS G  G A+DI
Sbjct: 77  IYDTMKYSPCDIATYGMGLAASMGQFLLSGGTKGKRFALPHARIMMHQPSAGVGGTAADI 136

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
              A+   + KR + E+  ++ G+++E++ K  DRD   +A +A ++G+VD V+ S
Sbjct: 137 AIQAEQFAQTKREMAELIAEHTGQSFEQITKDSDRDRWFTAQQAKEYGIVDHVIES 192


>gi|317124503|ref|YP_004098615.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Intrasporangium calvum DSM 43043]
 gi|315588591|gb|ADU47888.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Intrasporangium calvum DSM 43043]
          Length = 214

 Score =  196 bits (498), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 90/173 (52%), Positives = 125/173 (72%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IY+RLLKERI+F+   + D  A  ICAQLL L AE+P+K+I LYINSPGG ++AGMAI+D
Sbjct: 20  IYNRLLKERIIFLGSDVRDDNANAICAQLLLLSAEDPEKDIWLYINSPGGSISAGMAIFD 79

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM +I   ++T  MG AASMG  LLSAG  G R+A P+AR+++HQPSGG  G A+DI+  
Sbjct: 80  TMNWIPNDVATVAMGMAASMGQFLLSAGTHGKRYATPHARVMMHQPSGGIGGTATDIKIQ 139

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+ ++ +K+++ E+  ++ G+T E++EK  DRD   SA EA ++G VD V  S
Sbjct: 140 AEQMLYVKKQMAELIAEHTGQTIEQIEKDSDRDRWFSAQEAKEYGFVDHVFSS 192


>gi|330469650|ref|YP_004407393.1| endopeptidase clp [Verrucosispora maris AB-18-032]
 gi|328812621|gb|AEB46793.1| endopeptidase clp [Verrucosispora maris AB-18-032]
          Length = 212

 Score =  196 bits (497), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 92/181 (50%), Positives = 125/181 (69%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y+RLLKERI+F+  ++ D +A  ICAQLL L AE+P ++I L+INSPGG V +GMAIYD
Sbjct: 28  VYNRLLKERIIFLGSEVNDQVANRICAQLLLLAAEDPDRDIFLWINSPGGSVYSGMAIYD 87

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ+I   +ST  MG AASMG LLL AG KG R+ALP+ARI++HQPSGG  G ASDI   
Sbjct: 88  TMQYIDNDVSTVAMGMAASMGQLLLCAGTKGKRYALPHARIMMHQPSGGLGGTASDIAIQ 147

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           A+ ++  KR   E    + G++  ++E   DRD   +A EA D+G +DKV++    + E 
Sbjct: 148 AEQMLYTKRMFQERVAHHTGQSQAQIEADSDRDRWFTAQEAMDYGFIDKVIIGAAQVPEG 207

Query: 215 S 215
           +
Sbjct: 208 A 208


>gi|70699878|gb|AAZ06847.1| ClpP1 [Microbacterium arborescens]
          Length = 194

 Score =  196 bits (497), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 93/177 (52%), Positives = 123/177 (69%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           ++ RLLK+RI+++  ++ D  A  ICA++L L AE+ +K+I LYINSPGG +TAGMAIYD
Sbjct: 10  VFDRLLKDRIIWLGSEVRDENANEICAKILLLAAEDSEKDIYLYINSPGGSITAGMAIYD 69

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQF+   I T  +G AASMG LLL+AG KG R+  PNAR+LLHQP GGF G ASDI+  
Sbjct: 70  TMQFVPNDIVTVGIGMAASMGQLLLTAGTKGKRYITPNARVLLHQPHGGFGGTASDIQTQ 129

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           AQ I+ +KRRL EI     GK+ E++    DRD   +A EA ++G VD +  S  D+
Sbjct: 130 AQLILDMKRRLAEITAAQTGKSVEQINADGDRDRWFTAQEALEYGFVDHIRESATDV 186


>gi|325286841|ref|YP_004262631.1| ATP-dependent Clp protease proteolytic subunit [Cellulophaga lytica
           DSM 7489]
 gi|324322295|gb|ADY29760.1| ATP-dependent Clp protease proteolytic subunit [Cellulophaga lytica
           DSM 7489]
          Length = 226

 Score =  196 bits (497), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 90/189 (47%), Positives = 134/189 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           + P ++E+      + D++SRL+ +RI+F+   I D +A ++ AQLLFLE+ +  K+I +
Sbjct: 34  MTPNIIEERQLNAIAMDVFSRLMMDRIIFLGTGINDQVANIVQAQLLFLESADASKDIQI 93

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+ IYDTMQFIKP ++T C G AASMG++LL AGEKG R  L ++R+++
Sbjct: 94  YINSPGGSVYAGLGIYDTMQFIKPDVATICTGMAASMGAVLLCAGEKGKRSGLTHSRVMI 153

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I+K+K  L  I   + G+T+++V    DRD+ M A EA  
Sbjct: 154 HQPLGGAQGQASDIEITAREILKLKDELYNIIATHSGQTFDKVSNDSDRDYWMKADEAKK 213

Query: 198 WGVVDKVLM 206
           +G++D++L+
Sbjct: 214 YGMIDEILV 222


>gi|325963649|ref|YP_004241555.1| ATP-dependent Clp protease proteolytic subunit ClpP [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323469736|gb|ADX73421.1| ATP-dependent Clp protease proteolytic subunit ClpP [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 207

 Score =  196 bits (497), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 93/170 (54%), Positives = 121/170 (71%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IY+RLLKERI+++  ++ D  A  IC+QLL L AENP K+I LYINSPGG VTAGMAIYD
Sbjct: 13  IYNRLLKERIIWLGSEVRDDNANAICSQLLLLSAENPDKDIYLYINSPGGSVTAGMAIYD 72

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQFI   + T   G AASMG  LLS+G KG R+A PNAR+L+HQPSGG  G ASDI+  
Sbjct: 73  TMQFIPNDVVTVATGLAASMGQFLLSSGTKGKRYATPNARVLMHQPSGGIGGTASDIKIQ 132

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           A+ I+ +K+ + E+  +  G+T E + K  DRD   +A+EA ++G  DK+
Sbjct: 133 AELILHMKKVMAELTAEQTGQTVETILKDNDRDKWFTATEALEYGFFDKI 182


>gi|227548721|ref|ZP_03978770.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227079188|gb|EEI17151.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 190

 Score =  196 bits (497), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 89/171 (52%), Positives = 124/171 (72%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL+ERI+F+  Q++D +A  +CAQ+L L AE+P ++ISLYINSPGG VTAGMAIYD
Sbjct: 7   VYERLLRERIIFLGQQVDDEIANKLCAQILLLSAEDPTRDISLYINSPGGSVTAGMAIYD 66

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM++    I+T+ MG AASMG  LLS G KG R+ALP+ARI++HQPS G  G A+DI   
Sbjct: 67  TMKYSPCDIATYGMGLAASMGQFLLSGGTKGKRYALPHARIMMHQPSAGVGGTAADIAIQ 126

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+     KR + E+  ++ G+T+E++ K  DRD   +A EA ++G+VD V+
Sbjct: 127 AEQFAATKREMAELIAEHTGQTFEQITKDSDRDRWFTAQEAKEYGIVDHVI 177


>gi|227542940|ref|ZP_03972989.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227181162|gb|EEI62134.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 187

 Score =  196 bits (497), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 89/171 (52%), Positives = 123/171 (71%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL+ERI+F+  ++ D +A  +CAQ+L L AE+P ++ISLYINSPGG VTAGMAIYD
Sbjct: 7   VYERLLRERIIFLGSEVNDEIANKLCAQILLLSAEDPTRDISLYINSPGGSVTAGMAIYD 66

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM++    ++T+ MG AASMG  LL+AG KG R+ALP+ARIL+HQPS G  G ASDI   
Sbjct: 67  TMKYAPCDVATYAMGLAASMGQFLLTAGTKGKRYALPHARILMHQPSAGVGGTASDIAIQ 126

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           AQ     K+ + E+  ++ G+T+E++ K  DRD   +A EA D+G+ D V+
Sbjct: 127 AQQFALTKKEMAELIAEHSGQTFEQISKDSDRDRWFTAEEARDYGLCDHVI 177


>gi|119716961|ref|YP_923926.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nocardioides
           sp. JS614]
 gi|119537622|gb|ABL82239.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nocardioides
           sp. JS614]
          Length = 200

 Score =  196 bits (497), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 96/190 (50%), Positives = 137/190 (72%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVE+T RGER+ DIYSRLL +RIV+V  +I+D +A ++ AQLL LE++ P + ISLY
Sbjct: 6   IPSVVERTARGERAVDIYSRLLTDRIVYVGTEIDDGVANVVIAQLLHLESDAPDQPISLY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           +NSPGG VTA +AIYDTMQF++ P+ T C+GQAAS  ++LL+ GE G R  LP AR++LH
Sbjct: 66  LNSPGGSVTAMLAIYDTMQFVRSPVGTTCVGQAASSAAVLLAGGEPGSRTVLPRARVVLH 125

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  G   D+   A++IV+++  + EI  ++ G++  +V    DRD ++SA +A  +
Sbjct: 126 QPSGGGQGTLPDLALQAKEIVRLRTAMEEILAEHTGRSVAQVHADTDRDLVLSAEQAVAY 185

Query: 199 GVVDKVLMSR 208
           G+ D VL SR
Sbjct: 186 GLADAVLDSR 195


>gi|220912907|ref|YP_002488216.1| endopeptidase Clp [Arthrobacter chlorophenolicus A6]
 gi|219859785|gb|ACL40127.1| Endopeptidase Clp [Arthrobacter chlorophenolicus A6]
          Length = 206

 Score =  196 bits (497), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 93/170 (54%), Positives = 121/170 (71%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IY+RLLKERI+++  ++ D  A  IC+QLL L AENP+K+I LYINSPGG VTAGMAIYD
Sbjct: 13  IYNRLLKERIIWLGSEVRDDNANAICSQLLLLSAENPEKDIYLYINSPGGSVTAGMAIYD 72

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQFI   + T   G AASMG  LLS+G KG R+A PNAR+L+HQPSGG  G ASDI+  
Sbjct: 73  TMQFIPNDVVTVATGLAASMGQFLLSSGTKGKRYATPNARVLMHQPSGGIGGTASDIKIQ 132

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           A+ I+ +K+ + E+     G+T E + K  DRD   +A+EA ++G  DK+
Sbjct: 133 AELILHMKKVMAELTADQTGQTVETILKDNDRDKWFTAAEALEYGFFDKI 182


>gi|284929271|ref|YP_003421793.1| ATP-dependent Clp protease proteolytic subunit ClpP [cyanobacterium
           UCYN-A]
 gi|284809715|gb|ADB95412.1| ATP-dependent Clp protease proteolytic subunit ClpP [cyanobacterium
           UCYN-A]
          Length = 198

 Score =  196 bits (497), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 95/180 (52%), Positives = 132/180 (73%), Gaps = 1/180 (0%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ER  DIY+RL +ERI+F++ ++ D +A  I A LL+L++E+  K I LYINSPGG VTAG
Sbjct: 18  ERWIDIYTRLGQERIIFLSQEVTDGIANRIVALLLYLDSEDSSKPIYLYINSPGGSVTAG 77

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS-GQA 148
           MAI+DTMQ+I+  + T C+G AASMGS LL+AG  G R ALP+ARI++HQP GG    QA
Sbjct: 78  MAIFDTMQYIRSEVITICVGLAASMGSFLLAAGTPGKRLALPHARIMIHQPMGGTGRRQA 137

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           SDIE  A +I++I+ +LN I    CG+  E++EK  DRD+ +SA EA ++G++D+V+  R
Sbjct: 138 SDIEIEANEILRIRAQLNNILATKCGQPLEKIEKDTDRDYFLSAEEAKNYGLIDQVIEER 197


>gi|227833714|ref|YP_002835421.1| ATP-dependent Clp protease proteolytic subunit 1 [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262184721|ref|ZP_06044142.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454730|gb|ACP33483.1| ATP-dependent Clp protease proteolytic subunit 1 [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 199

 Score =  195 bits (496), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 88/173 (50%), Positives = 126/173 (72%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL+ERI+F+  Q++D +A  +CAQ+L L AE+P ++ISLYINSPGG VTAGMAIYD
Sbjct: 20  VYERLLRERIIFLGTQVDDEIANKLCAQILLLSAEDPTRDISLYINSPGGSVTAGMAIYD 79

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM++    ++T+ MG AASMG  LLS G KG R+ALP+ARI++HQPS G  G A+DI   
Sbjct: 80  TMKYSPCDVATYGMGLAASMGQFLLSGGTKGKRYALPHARIMMHQPSAGVGGTAADIAIQ 139

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+   + KR + E+  ++ G+T+E++ K  DRD   +A +A ++G+VD V+ S
Sbjct: 140 AEQFAQTKREMAELIAEHTGQTFEQITKDSDRDRWFTAQQAKEYGIVDHVIES 192


>gi|189502525|ref|YP_001958242.1| hypothetical protein Aasi_1180 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497966|gb|ACE06513.1| hypothetical protein Aasi_1180 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 224

 Score =  195 bits (496), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 90/184 (48%), Positives = 134/184 (72%)

Query: 22  VVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS 81
           V+E+     R  D++SRL+ +RI+F+   ++DH++ +I AQLLFLE+ +P+K++ LYINS
Sbjct: 36  VIEERPTHFREIDVFSRLIMDRIIFLGMPVDDHISNIIVAQLLFLESTDPKKDVRLYINS 95

Query: 82  PGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
           PGG V  G+ IYDTMQ+I P + T C G AASM ++LL+ G    R+ALP++RIL+HQP 
Sbjct: 96  PGGSVYPGLGIYDTMQYIAPDVHTICTGLAASMAAVLLAGGAHKKRYALPHSRILIHQPL 155

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
           GG  GQASD+E   + +++IKR L +I  K+ GK+  ++EK  DRD+ M ASEA ++G++
Sbjct: 156 GGAQGQASDMEITVKQMLEIKRDLYQILAKHTGKSQGKLEKDGDRDYWMRASEAKEYGII 215

Query: 202 DKVL 205
           D+VL
Sbjct: 216 DEVL 219


>gi|295111709|emb|CBL28459.1| ATP-dependent Clp protease proteolytic subunit ClpP [Synergistetes
           bacterium SGP1]
          Length = 184

 Score =  195 bits (496), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 94/180 (52%), Positives = 128/180 (71%)

Query: 26  TNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV 85
           T R     D+YS L ++RIVF+   I+D +A  I AQLL L   + +KEISLYINSPGG 
Sbjct: 3   TGRKGEGRDVYSCLFEDRIVFLGSPIDDAVANGIVAQLLLLANRDEKKEISLYINSPGGS 62

Query: 86  VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS 145
           V+AG+AIYDTMQF+  P++T C+GQAASMG++LL+AG KG R ALP+A+++LHQP GG  
Sbjct: 63  VSAGLAIYDTMQFVPCPVATTCIGQAASMGAVLLAAGAKGRRSALPHAKVMLHQPLGGAG 122

Query: 146 GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           GQASD+   AQ+++K +  LN +   +  +  E VEK  DRD  MSA EA  +G++D+V+
Sbjct: 123 GQASDVALFAQELIKTREVLNALIAHHTAQKVETVEKDTDRDFFMSAQEAQRYGIIDEVI 182


>gi|26324293|dbj|BAC24984.1| unnamed protein product [Mus musculus]
          Length = 189

 Score =  195 bits (496), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 90/158 (56%), Positives = 127/158 (80%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM 108
           G I+D +A+L+ AQLLFL++E+ +K I +YINSPGGVVTAG+AIYDTMQ+I  PI T+C+
Sbjct: 2   GPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCV 61

Query: 109 GQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           GQAASMGSLLL+AG  GMR +LPN+RI++HQPSGG  GQA+DI   A++I+K+K++L  I
Sbjct: 62  GQAASMGSLLLAAGSPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNI 121

Query: 169 YVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           Y K+  ++ + +E  ++RD  MS  EA ++G++DKVL+
Sbjct: 122 YAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLV 159


>gi|313675245|ref|YP_004053241.1| ATP-dependent clp protease proteolytic subunit clpp [Marivirga
           tractuosa DSM 4126]
 gi|312941943|gb|ADR21133.1| ATP-dependent Clp protease proteolytic subunit ClpP [Marivirga
           tractuosa DSM 4126]
          Length = 222

 Score =  195 bits (496), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 92/187 (49%), Positives = 134/187 (71%)

Query: 22  VVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS 81
           V+E+     R  D++SRL+ +RI+F+  Q++D++A +I AQLLFL++ + +K+ISLYINS
Sbjct: 36  VIEERPTNFREIDVFSRLIMDRIIFLGMQVDDNIANVITAQLLFLQSVDAKKDISLYINS 95

Query: 82  PGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
           PGG V AG+ IYDTM +I P + T C G AASMG++LL+ G +  R ALP+ARI++HQP 
Sbjct: 96  PGGSVYAGLGIYDTMHYISPDVGTICTGLAASMGAVLLAGGAEKKRSALPHARIMIHQPM 155

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            G  GQASD+E   +  + +K  L  I  K+ GKTY++VEK  DRD  M ASEA ++G++
Sbjct: 156 SGMQGQASDMEISLKQTLSVKEDLYNILSKHSGKTYKQVEKDSDRDFWMRASEAKEYGLI 215

Query: 202 DKVLMSR 208
           D+VL+ +
Sbjct: 216 DEVLVRK 222


>gi|53715362|ref|YP_101354.1| ATP-dependent Clp protease proteolytic subunit [Bacteroides
           fragilis YCH46]
 gi|253567251|ref|ZP_04844701.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacteroides sp.
           3_2_5]
 gi|255011711|ref|ZP_05283837.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacteroides
           fragilis 3_1_12]
 gi|265767849|ref|ZP_06095381.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacteroides
           sp. 2_1_16]
 gi|313149546|ref|ZP_07811739.1| endopeptidase Clp [Bacteroides fragilis 3_1_12]
 gi|67460245|sp|Q64NW2|CLPP_BACFR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|52218227|dbj|BAD50820.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacteroides
           fragilis YCH46]
 gi|251944082|gb|EES84601.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacteroides sp.
           3_2_5]
 gi|263252521|gb|EEZ24049.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacteroides
           sp. 2_1_16]
 gi|301164820|emb|CBW24380.1| putative ATP-dependent CLP protease proteolytic subunit
           [Bacteroides fragilis 638R]
 gi|313138313|gb|EFR55673.1| endopeptidase Clp [Bacteroides fragilis 3_1_12]
          Length = 220

 Score =  195 bits (496), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 91/191 (47%), Positives = 136/191 (71%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P ++E+        D++SRL+ +RI+F+  QI+D+ A  + AQLL+L++ +P K+IS+
Sbjct: 30  LNPYILEERQLNVTQLDVFSRLMMDRIIFLGTQIDDYTANTLQAQLLYLDSVDPGKDISI 89

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+ IYDTMQFI   ++T C G AASM S+LL AG KG R ALP++R+++
Sbjct: 90  YINSPGGSVYAGLGIYDTMQFISSDVATICTGMAASMASVLLVAGAKGKRSALPHSRVMI 149

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I K+K+ L  I   + G ++++V    DRD+ M+A EA +
Sbjct: 150 HQPMGGAQGQASDIEITAREIQKLKKELYTIIADHSGTSFDKVWADSDRDYWMTAQEAKE 209

Query: 198 WGVVDKVLMSR 208
           +G++D+VL+ +
Sbjct: 210 YGMIDEVLIKK 220


>gi|162606094|ref|XP_001713562.1| ATP-dependent Clp protease proteolytic subunit [Guillardia theta]
 gi|13794482|gb|AAK39857.1|AF165818_65 ATP-dependent Clp protease proteolytic subunit [Guillardia theta]
          Length = 233

 Score =  195 bits (496), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 91/176 (51%), Positives = 133/176 (75%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           DIY+RL +ERI+F+  +I+D +A  I A +L+L++E+  K I +YINSPGG V +G+A+Y
Sbjct: 54  DIYNRLYRERIIFLGQEIDDEIANQIIAVMLYLDSEDNSKPIYMYINSPGGSVISGLAMY 113

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           DTM+ IK  + T  +G AASM S +L+AGEKG R ALP++RI++HQP GG  GQASDIE 
Sbjct: 114 DTMRHIKSEVITINVGLAASMSSFILAAGEKGKRLALPHSRIMIHQPMGGAQGQASDIEV 173

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
            AQ I+KI++ L E Y +  G++YE+V + +DRD+ MS+ EA D+G++DKV+ S++
Sbjct: 174 EAQQILKIRKSLTEDYAEMSGRSYEKVLQDMDRDNFMSSYEALDYGLIDKVIESKL 229


>gi|111223668|ref|YP_714462.1| ATP-dependent Clp protease proteolytic subunit [Frankia alni
           ACN14a]
 gi|111151200|emb|CAJ62911.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
           [Frankia alni ACN14a]
          Length = 221

 Score =  195 bits (496), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 98/191 (51%), Positives = 142/191 (74%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P +VE+T+RGE   D YS+LLKERIVF+  Q++D  A  + AQLLFLE+E+P ++IS+
Sbjct: 19  VLPNIVERTSRGEYGMDPYSKLLKERIVFLGVQVDDVSANDVMAQLLFLESEDPDRDISI 78

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+  AIYDTMQF++P IST CMGQAAS  ++LL+AG  G RFAL N+RIL+
Sbjct: 79  YINSPGGSFTSLTAIYDTMQFVRPDISTICMGQAASAAAVLLAAGTPGKRFALENSRILI 138

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPS    GQ+SD+E  A++I++++     +  ++ G++  E+ +  +RD I SA+EA +
Sbjct: 139 HQPSAQGEGQSSDLEIQAREILRVRALQETLLARHTGRSETEIRRDTERDKIFSAAEAKE 198

Query: 198 WGVVDKVLMSR 208
           +G+VD V+ SR
Sbjct: 199 YGLVDDVITSR 209


>gi|325000575|ref|ZP_08121687.1| endopeptidase Clp [Pseudonocardia sp. P1]
          Length = 230

 Score =  195 bits (496), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 95/192 (49%), Positives = 137/192 (71%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T+ G +  + Y++L +ERI+F+  QI D  A    AQLL LE+ +P +EISL
Sbjct: 31  VLPSYVERTSYGVKESNPYNKLFEERIIFLGEQINDTSANDTMAQLLVLESLDPDREISL 90

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQFI+P I T C+GQAAS  ++LL AG  G R A+ NARIL+
Sbjct: 91  YINSPGGSFTSLMAIYDTMQFIRPDIQTVCLGQAASAAAVLLCAGTPGRRMAVENARILI 150

Query: 138 HQPSG-GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+  G  GQASD+E  A +I +I++R+ E+  ++  +T E+V   +DRD I++A EA 
Sbjct: 151 HQPATEGVYGQASDLEIQATEISRIRKRMEEVIARHSNRTAEQVRDDIDRDKILTAEEAK 210

Query: 197 DWGVVDKVLMSR 208
           ++G+VD+++ SR
Sbjct: 211 EYGLVDEIVQSR 222


>gi|229821079|ref|YP_002882605.1| Endopeptidase Clp [Beutenbergia cavernae DSM 12333]
 gi|229566992|gb|ACQ80843.1| Endopeptidase Clp [Beutenbergia cavernae DSM 12333]
          Length = 213

 Score =  195 bits (496), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 88/171 (51%), Positives = 124/171 (72%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IY+RLLKERI+++  ++ D  A  IC Q++ L AE+P K+I LYINSPGG VTAGMAIYD
Sbjct: 29  IYNRLLKERIIWLGSEVRDDNANQICGQMMLLAAEDPTKDIWLYINSPGGSVTAGMAIYD 88

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ+++P ++T  MG AASMG  LL++G KG R+A P+AR+++HQPSGG  G A+DI  +
Sbjct: 89  TMQYVQPDVATVAMGMAASMGQFLLASGAKGKRYATPHARVMMHQPSGGIGGTATDIRIN 148

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+ I+ +KR + E+  +  GKT E+V    DRD   +A EA ++G +D V+
Sbjct: 149 AELILHMKRVMAELTAEQTGKTVEQVNADADRDRWFTAEEAREYGFIDHVV 199


>gi|323359780|ref|YP_004226176.1| protease subunit of ATP-dependent Clp protease [Microbacterium
           testaceum StLB037]
 gi|323276151|dbj|BAJ76296.1| protease subunit of ATP-dependent Clp protease [Microbacterium
           testaceum StLB037]
          Length = 194

 Score =  195 bits (496), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 92/177 (51%), Positives = 123/177 (69%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           ++ RLLK+RI+++  ++ D  A  ICA++L L AE+PQK+I LYINSPGG +TAGMAIYD
Sbjct: 10  VFDRLLKDRIIWLGSEVRDENANEICAKILLLAAEDPQKDIYLYINSPGGSITAGMAIYD 69

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQF+   I T  +G AASMG LLL++G KG R+  PNAR+LLHQP GGF G +SDI+  
Sbjct: 70  TMQFVPNDIVTVGIGMAASMGQLLLTSGTKGKRYITPNARVLLHQPHGGFGGTSSDIQTQ 129

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           AQ I+ +KRRL EI     GK+ E++    DRD   +A EA ++G VD +     D+
Sbjct: 130 AQLILDMKRRLAEITASQTGKSVEQINADGDRDRWFTAQEALEYGFVDHMREHATDV 186


>gi|226360502|ref|YP_002778280.1| ATP-dependent Clp protease proteolytic subunit [Rhodococcus opacus
           B4]
 gi|226238987|dbj|BAH49335.1| ATP-dependent Clp protease proteolytic subunit [Rhodococcus opacus
           B4]
          Length = 208

 Score =  195 bits (496), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 92/186 (49%), Positives = 127/186 (68%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P +   T     S  +Y RLL+ERI+F+  Q++D +A  +CAQ+L L AE+P ++ISLYI
Sbjct: 12  PAMTSATAGLNLSDSVYERLLRERIIFLGTQVDDDIANKLCAQILLLSAEDPSRDISLYI 71

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V+AGMAI+DTMQF +  ++TF MG AASMG  LLSAG KG R+ALP+ARI++HQ
Sbjct: 72  NSPGGSVSAGMAIFDTMQFAECDVATFGMGLAASMGQFLLSAGAKGKRYALPHARIMMHQ 131

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           PS G  G ASDI   A+     KR + E+  ++ G+T E++    DRD   +A +A ++G
Sbjct: 132 PSAGIGGTASDIAIMAEQFAHTKREMAELIAEHTGQTVEQITADSDRDRWFTAQQALEYG 191

Query: 200 VVDKVL 205
            VD V+
Sbjct: 192 FVDHVV 197


>gi|296118749|ref|ZP_06837325.1| Clp protease [Corynebacterium ammoniagenes DSM 20306]
 gi|295968238|gb|EFG81487.1| Clp protease [Corynebacterium ammoniagenes DSM 20306]
          Length = 199

 Score =  195 bits (495), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 90/171 (52%), Positives = 122/171 (71%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL ERI+F+  Q++D +A  +CAQ+L L AE+P ++ISLYINSPGG VTAGMAIYD
Sbjct: 20  VYERLLSERIIFLGTQVDDEIANKLCAQILLLSAEDPTRDISLYINSPGGSVTAGMAIYD 79

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM++    I T+ MG AASMG  LLS G KG RFALP+ARI++HQPS G  G ASDI   
Sbjct: 80  TMKYSPCDIRTYGMGLAASMGQFLLSGGTKGKRFALPHARIMMHQPSAGVGGTASDIAIQ 139

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+     KR + E+  ++ G+T+E++ K  DRD   +A +A ++G+VD V+
Sbjct: 140 AEQFAATKREMAELIAEHTGQTFEQITKDSDRDRWFTADQAKEYGIVDHVI 190


>gi|149275732|ref|ZP_01881877.1| ATP-dependent Clp protease proteolytic subunit 2 [Pedobacter sp.
           BAL39]
 gi|149233160|gb|EDM38534.1| ATP-dependent Clp protease proteolytic subunit 2 [Pedobacter sp.
           BAL39]
          Length = 233

 Score =  195 bits (495), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 90/188 (47%), Positives = 135/188 (71%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           + P ++E+        D++SRL+ +RI+F+   I D  A +I AQLLFL++ + Q++I +
Sbjct: 37  MTPYIIEERQLNVAQMDVFSRLMMDRIIFLGDAIYDGNANIIQAQLLFLQSTDNQRDIQI 96

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+ IYDTMQ+I P ++T C G AASMG++LL AG KG R ALP++R+++
Sbjct: 97  YINSPGGSVYAGLGIYDTMQYISPDVATICTGMAASMGAVLLVAGAKGKRAALPHSRVMI 156

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  G ASD+E + ++++K+K+ L +I   + G++YE VEK  DRD+ M A EA  
Sbjct: 157 HQPSGGAQGVASDMEINLREMLKLKKELYDIISNHSGQSYEWVEKASDRDYWMKADEAKS 216

Query: 198 WGVVDKVL 205
           +G++D+VL
Sbjct: 217 FGMIDEVL 224


>gi|84494299|ref|ZP_00993418.1| ATP-dependent Clp protease proteolytic subunit 1 [Janibacter sp.
           HTCC2649]
 gi|84383792|gb|EAP99672.1| ATP-dependent Clp protease proteolytic subunit 1 [Janibacter sp.
           HTCC2649]
          Length = 206

 Score =  195 bits (495), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 93/176 (52%), Positives = 128/176 (72%), Gaps = 1/176 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IY+RLLKERI+F+  ++ D  A  ICAQ+L L AE+ +K+I LYINSPGG VTAGMAI+D
Sbjct: 21  IYNRLLKERIIFLGSEVRDDNANAICAQMLLLAAEDSEKDIWLYINSPGGSVTAGMAIFD 80

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ++   ++T  MG AASMG  LLSAG  G R A P+AR+++HQPSGG  G ASDI+  
Sbjct: 81  TMQWVPNDVATVAMGMAASMGQFLLSAGTPGKRHATPHARVMMHQPSGGIGGTASDIKIQ 140

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           A+ ++ IK+++ E+  ++ G+T E++E+  DRD   +ASEA ++G VD V  SR D
Sbjct: 141 AEQLLHIKKQMAELIAEHTGQTPEQIEEDSDRDRWFTASEAKEYGFVDHVF-SRAD 195


>gi|145596011|ref|YP_001160308.1| endopeptidase Clp [Salinispora tropica CNB-440]
 gi|145305348|gb|ABP55930.1| Endopeptidase Clp [Salinispora tropica CNB-440]
          Length = 213

 Score =  195 bits (495), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 94/189 (49%), Positives = 127/189 (67%)

Query: 27  NRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVV 86
           N G     +Y+RLLKERI+F+  ++ D +A  ICAQLL L AE+P ++I+L+INSPGG V
Sbjct: 21  NIGNLDDSVYNRLLKERIIFLGSEVTDQVANRICAQLLLLAAEDPDRDINLWINSPGGSV 80

Query: 87  TAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG 146
            +GMAIYDTMQFI   +ST  MG AASMG LLL AG KG R+ALP+ARI++HQPSGG  G
Sbjct: 81  YSGMAIYDTMQFIDNDVSTVAMGMAASMGQLLLCAGTKGKRYALPHARIMMHQPSGGMGG 140

Query: 147 QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
            ASDI   A+ ++  KR   E    + G++  ++E   DRD   +A EA ++G +DKV+ 
Sbjct: 141 TASDIAIQAEQMLYTKRMFQERVAFHTGQSQAQIEADSDRDRWFTAQEAMEYGFIDKVIT 200

Query: 207 SRIDIEEKS 215
               + E +
Sbjct: 201 GAAQVPEGA 209


>gi|116670951|ref|YP_831884.1| ClpP1 peptidase. Serine peptidase. MEROPS family S14 /
           ATP-dependent Clp protease proteolytic subunit ClpP
           [Arthrobacter sp. FB24]
 gi|116611060|gb|ABK03784.1| ATP-dependent Clp protease proteolytic subunit ClpP [Arthrobacter
           sp. FB24]
          Length = 203

 Score =  195 bits (495), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 94/170 (55%), Positives = 119/170 (70%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IY+RLLKERI+++  ++ D  A  IC+QLL L AENP K+I LYINSPGG VTAGMAIYD
Sbjct: 13  IYNRLLKERIIWLGSEVRDENANAICSQLLLLSAENPDKDIYLYINSPGGSVTAGMAIYD 72

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQFI   + T   G AASMG  LLS+G KG R+A PNARIL+HQPSGG  G ASDI+  
Sbjct: 73  TMQFIPNDVVTVATGLAASMGQFLLSSGTKGKRYATPNARILMHQPSGGIGGTASDIKIQ 132

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           A+ I+ +K+ + E+     G+T E + K  DRD   +A EA ++G  DK+
Sbjct: 133 AELILHMKKVMAELTADQTGQTVETILKDNDRDKWFTAPEALEYGFFDKI 182


>gi|288920828|ref|ZP_06415126.1| Endopeptidase Clp [Frankia sp. EUN1f]
 gi|288347787|gb|EFC82066.1| Endopeptidase Clp [Frankia sp. EUN1f]
          Length = 214

 Score =  195 bits (495), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 96/191 (50%), Positives = 143/191 (74%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P ++E+T+RGE   D YS+LLKERIVF+   I+D  A  + AQLLFLE+E+P ++IS+
Sbjct: 15  VLPNIIEKTSRGEYGMDPYSKLLKERIVFLGAPIDDTSANDVMAQLLFLESEDPDRDISI 74

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+  AIYDTMQF++P I T CMGQAAS  ++LL+AG  G RFAL N+RIL+
Sbjct: 75  YINSPGGSFTSLTAIYDTMQFVRPDIQTICMGQAASAAAVLLAAGTPGKRFALQNSRILI 134

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPS    GQ+SDIE  A++I++++  L  +  ++ G+  E++ K ++RD I+S+ EA +
Sbjct: 135 HQPSAQGEGQSSDIEIQAREILRMRTLLERMLAEHTGRNEEDIRKDIERDKILSSEEAKE 194

Query: 198 WGVVDKVLMSR 208
           +G++D+V+ +R
Sbjct: 195 YGLIDEVIKTR 205


>gi|60683331|ref|YP_213475.1| ATP-dependent Clp protease proteolytic subunit [Bacteroides
           fragilis NCTC 9343]
 gi|81313617|sp|Q5L8L6|CLPP_BACFN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|60494765|emb|CAH09571.1| putative ATP-dependent CLP protease proteolytic subunit
           [Bacteroides fragilis NCTC 9343]
          Length = 207

 Score =  195 bits (495), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 91/191 (47%), Positives = 136/191 (71%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P ++E+        D++SRL+ +RI+F+  QI+D+ A  + AQLL+L++ +P K+IS+
Sbjct: 17  LNPYILEERQLNVTQLDVFSRLMMDRIIFLGTQIDDYTANTLQAQLLYLDSVDPGKDISI 76

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+ IYDTMQFI   ++T C G AASM S+LL AG KG R ALP++R+++
Sbjct: 77  YINSPGGSVYAGLGIYDTMQFISSDVATICTGMAASMASVLLVAGAKGKRSALPHSRVMI 136

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I K+K+ L  I   + G ++++V    DRD+ M+A EA +
Sbjct: 137 HQPMGGAQGQASDIEITAREIQKLKKELYTIIADHSGTSFDKVWADSDRDYWMTAQEAKE 196

Query: 198 WGVVDKVLMSR 208
           +G++D+VL+ +
Sbjct: 197 YGMIDEVLIKK 207


>gi|148655690|ref|YP_001275895.1| endopeptidase Clp [Roseiflexus sp. RS-1]
 gi|148567800|gb|ABQ89945.1| Endopeptidase Clp [Roseiflexus sp. RS-1]
          Length = 203

 Score =  195 bits (495), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 88/190 (46%), Positives = 133/190 (70%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP +VE+T RGERS+D++SRLL+ERI+ +   I+D +A+LI AQLL+L+  +P ++I  Y
Sbjct: 6   VPTIVERTPRGERSWDLFSRLLQERIIMLGTPIDDEVASLIVAQLLYLQHTDPDRDIWFY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG V  G+AIYDTM+ I P + T C+G+A SM ++LL+ G +G R+ALP+A I  H
Sbjct: 66  INSPGGSVRDGLAIYDTMKLISPDVCTVCVGRAGSMATILLAGGARGKRYALPHATIHFH 125

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
              GG  G A D+ER  +++++I+   N +  ++ GKT EE+ +   RD  M+A EA ++
Sbjct: 126 PAGGGAEGYAPDMERIVKELLRIQELGNSLLARDTGKTVEEITRDFSRDRFMTAEEAREY 185

Query: 199 GVVDKVLMSR 208
           G +D +L S+
Sbjct: 186 GFIDAILESK 195


>gi|46203182|ref|ZP_00051927.2| COG0740: Protease subunit of ATP-dependent Clp proteases
           [Magnetospirillum magnetotacticum MS-1]
          Length = 201

 Score =  195 bits (495), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 96/190 (50%), Positives = 138/190 (72%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVE+T  GER++D++SRLL ERIVF+  +I+D +A ++ AQLL LE++ P +EI LY
Sbjct: 6   IPTVVERTPLGERAFDVFSRLLSERIVFLGTEIDDGVANVVMAQLLHLESDAPDQEIGLY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TA MAIYDTMQF++  +ST CMGQAAS  ++LL+AG  G RF L ++R+LLH
Sbjct: 66  INSPGGSATALMAIYDTMQFVRCDVSTICMGQAASAAAVLLAAGTPGKRFVLEHSRVLLH 125

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  G  SD+   A++I++I+    E+  ++ G+T E +    DRD +++A +A ++
Sbjct: 126 QPSGGGEGTISDLSIQAEEILRIRSETEEVLARHTGQTVERLRADTDRDLVLTARQAVEY 185

Query: 199 GVVDKVLMSR 208
           GV D V+ SR
Sbjct: 186 GVADAVVTSR 195


>gi|297160512|gb|ADI10224.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           bingchenggensis BCW-1]
          Length = 200

 Score =  195 bits (495), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 97/193 (50%), Positives = 131/193 (67%), Gaps = 1/193 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P    +   G     +Y+RLL ERI+F+   ++D +A  I AQLL L AE P K+I+LY
Sbjct: 1   MPSAAGEPTFGGLGDQVYNRLLGERIIFLGQPVDDDIANKITAQLLLLAAE-PDKDINLY 59

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG +TAGMAIYDTMQ+IK  + T  MG AASMG  LLSAG  G RFALPNA IL+H
Sbjct: 60  INSPGGSITAGMAIYDTMQYIKNDVITIAMGLAASMGQFLLSAGTPGKRFALPNAEILIH 119

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPS G +G ASDI+ HA+ +++ KR++ ++   + G+T E++ +  DRD   SA EA  +
Sbjct: 120 QPSAGLAGSASDIKIHAEQLLRTKRKMADLTAFHTGQTVEQITRDSDRDRWFSAEEAKAY 179

Query: 199 GVVDKVLMSRIDI 211
           G+VD+V+ S   I
Sbjct: 180 GLVDEVIASAAHI 192


>gi|305665189|ref|YP_003861476.1| ATP-dependent Clp protease proteolytic subunit 2 [Maribacter sp.
           HTCC2170]
 gi|88709941|gb|EAR02173.1| ATP-dependent Clp protease proteolytic subunit 2 [Maribacter sp.
           HTCC2170]
          Length = 226

 Score =  195 bits (495), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 91/193 (47%), Positives = 136/193 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           + P ++E+      + D++SRL+ +RI+F+   I D +A ++ AQLLFLE+ +  K+I +
Sbjct: 34  MTPNIIEERQLNAIAMDVFSRLMMDRIIFLGTGINDQVANIVQAQLLFLESADASKDIQI 93

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+ IYDTMQFIKP ++T C G AASMG++LL AGEKG R  L ++R+++
Sbjct: 94  YINSPGGSVYAGLGIYDTMQFIKPDVATICTGMAASMGAVLLCAGEKGKRSGLTHSRVMI 153

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I+K+K  L +I  K+ G+  ++V +  DRD+ M A EA  
Sbjct: 154 HQPMGGAQGQASDIEITAREILKLKEELYQIISKHSGQKLDKVHEDSDRDYWMKADEAKK 213

Query: 198 WGVVDKVLMSRID 210
           +G++D++L+   D
Sbjct: 214 YGMIDEILVRDKD 226


>gi|254415772|ref|ZP_05029530.1| Clp protease [Microcoleus chthonoplastes PCC 7420]
 gi|196177478|gb|EDX72484.1| Clp protease [Microcoleus chthonoplastes PCC 7420]
          Length = 206

 Score =  194 bits (494), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 102/191 (53%), Positives = 135/191 (70%), Gaps = 6/191 (3%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MVVEQ+  GER++DIYSRLL+ERIVF+  +I D +A  I AQLL+LEAE+P K+I LYI+
Sbjct: 1   MVVEQSGVGERAFDIYSRLLRERIVFLGTRINDVVADSIIAQLLYLEAEDPTKDIQLYIH 60

Query: 81  SPGGV------VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           SPGG       V AGMAIYDTMQ I+P I T C G A  MG +LL+ G  G R +LPNAR
Sbjct: 61  SPGGPILGLGGVIAGMAIYDTMQQIRPDIVTICFGAATDMGVILLTGGTPGKRMSLPNAR 120

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++ QP GG  GQA DIE  A++I+  K +LNE+   + G+ YE +    +RD  +SA+E
Sbjct: 121 IMISQPLGGAQGQAVDIEIQAKEILYHKNQLNELMAYHTGQPYERIATDTERDFFLSAAE 180

Query: 195 ACDWGVVDKVL 205
           A ++G+VD+V+
Sbjct: 181 AKEYGLVDQVI 191


>gi|111018382|ref|YP_701354.1| ATP-dependent Clp protease proteolytic subunit [Rhodococcus jostii
           RHA1]
 gi|116243119|sp|Q0SGZ0|CLPP2_RHOSR RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|110817912|gb|ABG93196.1| ATP-dependent protease proteolytic subunit [Rhodococcus jostii
           RHA1]
          Length = 195

 Score =  194 bits (494), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 90/174 (51%), Positives = 124/174 (71%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           S  +Y RLL+ERI+F+  Q++D +A  +CAQ+L L AE+P ++ISLYINSPGG V+AGMA
Sbjct: 11  SDSVYERLLRERIIFLGTQVDDDIANKLCAQILLLSAEDPSRDISLYINSPGGSVSAGMA 70

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           I+DTMQF +  ++TF MG AASMG  LLSAG KG R+ALP+ARI++HQPS G  G ASDI
Sbjct: 71  IFDTMQFAECDVATFGMGLAASMGQFLLSAGAKGKRYALPHARIMMHQPSAGIGGTASDI 130

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
              A+     KR + E+  ++ G+T E++    DRD   +A +A ++G VD V+
Sbjct: 131 AIMAEQFAHTKREMAELIAEHTGQTVEQITADSDRDRWFTAQQALEYGFVDHVV 184


>gi|87302965|ref|ZP_01085769.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           WH 5701]
 gi|87282461|gb|EAQ74420.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           WH 5701]
          Length = 200

 Score =  194 bits (494), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 94/177 (53%), Positives = 133/177 (75%), Gaps = 1/177 (0%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ER  DIY+RL  ERI+F+  ++ D +A  + AQ+L+L++E+  K I LYINSPGG VTAG
Sbjct: 18  ERWVDIYTRLGVERILFLGQEVNDGIANSLVAQMLYLDSEDSSKPIYLYINSPGGSVTAG 77

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG-QA 148
           +AIYDT+Q++K  + T C+G AASMG+ LL+AG KG R ALP+ARI++HQP GG S  QA
Sbjct: 78  LAIYDTIQYVKSDVVTICVGLAASMGAFLLAAGTKGKRLALPHARIMIHQPLGGTSQRQA 137

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           SDIE  A++I++IK  LN+     CG++ E+V K  DRD+ +SA+EA D+G++D+V+
Sbjct: 138 SDIEIEAREILRIKDMLNQSLADMCGQSLEKVTKDTDRDYFLSAAEAKDYGLIDRVI 194


>gi|544044|sp|P36398|CLPP_STRSL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|347999|gb|AAA26891.1| ATP-dependent protease proteolytic subunit [Streptococcus
           salivarius]
          Length = 196

 Score =  194 bits (494), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 93/190 (48%), Positives = 135/190 (71%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGE SYDIYSRLLK+RI+ +TG +ED+MA  I AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGEASYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTVIASSGTKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K +  L +I   N G+  E+V    +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRNNLEQILADNSGQPIEKVHVDAERDNWMSAQET 180

Query: 196 CDWGVVDKVL 205
            ++G +D+++
Sbjct: 181 LEYGFIDEIM 190


>gi|294629346|ref|ZP_06707906.1| Clp protease [Streptomyces sp. e14]
 gi|292832679|gb|EFF91028.1| Clp protease [Streptomyces sp. e14]
          Length = 219

 Score =  194 bits (494), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 92/173 (53%), Positives = 125/173 (72%), Gaps = 1/173 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y+RLL ERI+F+   ++D +A  I AQLL L A+ P K+I LYINSPGG +TAGMAIYD
Sbjct: 36  VYNRLLNERIIFLGQPVDDDIANKITAQLLLLAAD-PDKDIYLYINSPGGSITAGMAIYD 94

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ+IK  + T  MG AASMG  LLSAG  G RFALPNA IL+HQPS G +G ASDI+ H
Sbjct: 95  TMQYIKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIH 154

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+ ++  K+R+ E+  ++ G+T+E++ +  DRD    A EA ++G++D V+ S
Sbjct: 155 AERLLHTKKRMAELTAQHTGQTFEQITRDSDRDRWFDAYEAKEYGLIDDVITS 207


>gi|72382719|ref|YP_292074.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus str. NATL2A]
 gi|124026440|ref|YP_001015555.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus str. NATL1A]
 gi|115311347|sp|Q46JF7|CLPP2_PROMT RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|72002569|gb|AAZ58371.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Prochlorococcus marinus str. NATL2A]
 gi|123961508|gb|ABM76291.1| Clp protease proteolytic subunit [Prochlorococcus marinus str.
           NATL1A]
          Length = 200

 Score =  194 bits (494), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 93/177 (52%), Positives = 134/177 (75%), Gaps = 1/177 (0%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ER  DIY+RL  ERI+F+  ++ D +A  + AQ+L+L++E+  K I LYINSPGG VTAG
Sbjct: 18  ERWVDIYTRLGAERILFLGQEVNDGIANSLVAQMLYLDSEDSSKPIYLYINSPGGSVTAG 77

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG-QA 148
           +AIYDTM+++K  + T C+G AASMG+ LLSAG KG R ALP++RI++HQP GG +  QA
Sbjct: 78  LAIYDTMKYVKSDLVTICVGLAASMGAFLLSAGTKGKRLALPHSRIMIHQPLGGTAQRQA 137

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           SDIE  A++I++IK  LN+   +  G+TYE++EK  DRD+ +SA EA ++G++D+V+
Sbjct: 138 SDIEIEAREILRIKEMLNKSMAEMTGQTYEKIEKDTDRDYFLSAEEAKNYGLIDRVI 194


>gi|325955073|ref|YP_004238733.1| ATP-dependent Clp protease proteolytic subunit [Weeksella virosa
           DSM 16922]
 gi|323437691|gb|ADX68155.1| ATP-dependent Clp protease proteolytic subunit [Weeksella virosa
           DSM 16922]
          Length = 222

 Score =  194 bits (493), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 86/188 (45%), Positives = 138/188 (73%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           + P ++E+        D++SRL+ +RI+F+   I+D +A +I AQLLFLE+ +  K+I +
Sbjct: 30  VTPYIIEERKLNVAQMDVFSRLMMDRIIFLGTAIDDQIANIIQAQLLFLESTDATKDIQI 89

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG V AG+ IYDTMQ +KP ++T C G AASMG++LL+AG KG R AL ++R+++
Sbjct: 90  YVNSPGGGVYAGLGIYDTMQLVKPDVATICTGMAASMGAVLLAAGAKGKRSALKHSRVMI 149

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+D+E   ++I+K+K+ L +I   + G+T+E++EK  +RD+ M++ EA +
Sbjct: 150 HQPLGGAQGQATDMEITLKEILKLKKELYDIIAYHSGQTFEQIEKDGERDYWMTSEEAKN 209

Query: 198 WGVVDKVL 205
           +G++D+VL
Sbjct: 210 YGMIDEVL 217


>gi|89893323|ref|YP_516810.1| hypothetical protein DSY0577 [Desulfitobacterium hafniense Y51]
 gi|219666595|ref|YP_002457030.1| ATP-dependent Clp protease proteolytic subunit [Desulfitobacterium
           hafniense DCB-2]
 gi|116243100|sp|Q250C6|CLPP1_DESHY RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|89332771|dbj|BAE82366.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219536855|gb|ACL18594.1| Endopeptidase Clp [Desulfitobacterium hafniense DCB-2]
          Length = 193

 Score =  194 bits (493), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 99/190 (52%), Positives = 140/190 (73%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMV+EQT+RGERS DI+SRLL +R+V + G + +  A+LI AQ+LFLE+ +  K+I  
Sbjct: 4   LVPMVIEQTSRGERSCDIFSRLLNDRVVMLNGMVTNESASLIIAQMLFLESADCDKDIHF 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VT G+AI DTM +IK  +ST  +GQ+ S  SLLL+AG KG RFAL N+ +L+
Sbjct: 64  YINSPGGSVTDGLAIMDTMNYIKCDVSTISIGQSGSAASLLLAAGAKGKRFALANSEVLI 123

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQ +DI+ H+  + K K +LNE Y +  G+  E+++K ++RD+ M+A +A
Sbjct: 124 HQPSISGGLQGQTTDIKIHSDWLTKTKEKLNETYSRLTGQPLEKIQKDMERDYYMTAGQA 183

Query: 196 CDWGVVDKVL 205
            D+G++DK+L
Sbjct: 184 QDYGLIDKIL 193


>gi|315604696|ref|ZP_07879759.1| ATP-dependent Clp protease proteolytic subunit [Actinomyces sp.
           oral taxon 180 str. F0310]
 gi|315313708|gb|EFU61762.1| ATP-dependent Clp protease proteolytic subunit [Actinomyces sp.
           oral taxon 180 str. F0310]
          Length = 204

 Score =  194 bits (493), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 93/182 (51%), Positives = 125/182 (68%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           ++ RLLKERI+++ G++ D  A  ICAQLL L AE+P ++I LYINSPGG VTAGMAIYD
Sbjct: 21  VFQRLLKERIIWLGGEVRDENANTICAQLLLLAAEDPDRDIYLYINSPGGSVTAGMAIYD 80

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ++KP + T  MG AASM   LL+AG  G R+  P+ R+LLHQP GG  G A++I  +
Sbjct: 81  TMQYVKPDVVTVGMGMAASMAQFLLTAGAPGKRYITPHTRVLLHQPLGGAGGSATEIRIN 140

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           A  I+ +K+ L  I     GKT E+VE   DRDH  SA+EA ++G VD+V+ S  +I  +
Sbjct: 141 ADLILGMKKELASITAARTGKTVEQVEADGDRDHWFSAAEALEYGFVDRVINSPDEIGTR 200

Query: 215 SK 216
            +
Sbjct: 201 GE 202


>gi|320094140|ref|ZP_08025953.1| ATP-dependent Clp protease proteolytic subunit [Actinomyces sp.
           oral taxon 178 str. F0338]
 gi|319978942|gb|EFW10472.1| ATP-dependent Clp protease proteolytic subunit [Actinomyces sp.
           oral taxon 178 str. F0338]
          Length = 201

 Score =  194 bits (493), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 90/171 (52%), Positives = 122/171 (71%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLLKERI+++ G++ D  A  ICAQLL L AE+P ++I LYINSPGG VTAGMA+YD
Sbjct: 18  VYQRLLKERIIWLGGEVRDENANTICAQLLLLAAEDPDRDIYLYINSPGGSVTAGMAVYD 77

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ+IKP + T  MG AASMG  LL+AG  G R+  P+ R+LLHQP GG  G A++I  +
Sbjct: 78  TMQYIKPDVVTVGMGLAASMGQFLLTAGAPGKRYITPHTRVLLHQPLGGAGGSATEIRIN 137

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A  I+ +K+ L EI  +  GK+ E++E   DRDH  +A EA ++G VD+++
Sbjct: 138 ADLILGMKKELAEITAQRTGKSVEQIEADADRDHWFTAREALEYGFVDQLI 188


>gi|255030442|ref|ZP_05302393.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes LO28]
          Length = 146

 Score =  194 bits (493), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 89/146 (60%), Positives = 117/146 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT+RGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL+A++P+K+I
Sbjct: 1   MNLIPTVIEQTSRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG ++AGMAIYDTM F+K  + T  MG AASMGS LL+AG  G RFALPNA I
Sbjct: 61  FLYINSPGGSISAGMAIYDTMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKI 161
           ++HQP GG  GQA++IE  A+ I+KI
Sbjct: 121 MIHQPLGGAQGQATEIEIAARHILKI 146


>gi|119963474|ref|YP_948116.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Arthrobacter
           aurescens TC1]
 gi|119950333|gb|ABM09244.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Arthrobacter
           aurescens TC1]
          Length = 212

 Score =  194 bits (493), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 92/170 (54%), Positives = 122/170 (71%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IY+RLLKERI+++  ++ D  A  IC+QLL L AE+P+K+I LYINSPGG VTAGMAIYD
Sbjct: 22  IYNRLLKERIIWLGSEVRDENANAICSQLLLLSAEDPEKDIYLYINSPGGSVTAGMAIYD 81

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQFI   + T   G AASMG  LLS+G KG R+A PNARIL+HQPSGG  G ASDI+  
Sbjct: 82  TMQFIPNDVVTVATGLAASMGQFLLSSGTKGKRYATPNARILMHQPSGGIGGTASDIKIQ 141

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           A+ I+ +K+ + E+  +  G++ E + K  DRD   +A+EA ++G  DK+
Sbjct: 142 AELILHMKKVMAELTAEQTGQSVETILKDNDRDKWFTATEALEYGFFDKI 191


>gi|302869360|ref|YP_003837997.1| endopeptidase Clp [Micromonospora aurantiaca ATCC 27029]
 gi|315504165|ref|YP_004083052.1| endopeptidase clp [Micromonospora sp. L5]
 gi|302572219|gb|ADL48421.1| Endopeptidase Clp [Micromonospora aurantiaca ATCC 27029]
 gi|315410784|gb|ADU08901.1| Endopeptidase Clp [Micromonospora sp. L5]
          Length = 213

 Score =  194 bits (492), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 91/172 (52%), Positives = 122/172 (70%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y+RLLKERI+F+  ++ D +A  ICAQLL L AE+P ++I L+INSPGG V +GMAIYD
Sbjct: 29  VYNRLLKERIIFLGSEVNDQVANRICAQLLLLAAEDPDRDIFLWINSPGGSVYSGMAIYD 88

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ+I   +ST  MG AASMG LLL AG KG R+ALP+ARI++HQPSGG  G ASDI   
Sbjct: 89  TMQYIDNDVSTVAMGMAASMGQLLLCAGTKGKRYALPHARIMMHQPSGGLGGTASDIAIQ 148

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           A+ ++  KR   E    + G++  ++E   DRD   +A EA D+G +DKV++
Sbjct: 149 AEQMLYTKRMFQERVAFHTGQSQAQIEADSDRDRWFTAQEAMDYGFIDKVII 200


>gi|294634101|ref|ZP_06712656.1| Clp protease [Streptomyces sp. e14]
 gi|292829915|gb|EFF88269.1| Clp protease [Streptomyces sp. e14]
          Length = 191

 Score =  194 bits (492), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 89/186 (47%), Positives = 134/186 (72%), Gaps = 1/186 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP V+E+T +GERSYD++SRLL ERI+F+  +I+D +A ++ AQLL LE+  P+ EIS+Y
Sbjct: 6   VPYVIERTAQGERSYDVFSRLLNERIIFLGTEIDDGVANVVIAQLLHLESAYPEHEISIY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           +NSPGG  T+ MAIYDTM F++ PISTFC+GQAAS  ++LL+ G+ G RF L +AR+LL 
Sbjct: 66  LNSPGGSFTSLMAIYDTMTFVQSPISTFCVGQAASTAAVLLAGGDPGRRFVLEHARVLLG 125

Query: 139 QP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP SGG  G  SD+   A+++V+++ ++ E+  ++ G     +   +DRD + +A EA  
Sbjct: 126 QPASGGRQGTVSDLALQAKEMVRVRAQVEEVLSRHTGHDPAALRADMDRDKVFTAHEAVA 185

Query: 198 WGVVDK 203
           +G+ D+
Sbjct: 186 YGLADE 191


>gi|229139426|ref|ZP_04267997.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           BDRD-ST26]
 gi|228643973|gb|EEL00234.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           BDRD-ST26]
          Length = 164

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 92/161 (57%), Positives = 119/161 (73%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ +K+I LY
Sbjct: 4   IPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLY 63

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I++H
Sbjct: 64  INSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIH 123

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
           QP GG  GQA++IE  A+ I+K+K  +N++  +  G   +E
Sbjct: 124 QPLGGAKGQATEIEITAKRILKLKHDINKMIAEKQGNRLKE 164


>gi|312131371|ref|YP_003998711.1| ATP-dependent clp protease proteolytic subunit clpp [Leadbetterella
           byssophila DSM 17132]
 gi|311907917|gb|ADQ18358.1| ATP-dependent Clp protease proteolytic subunit ClpP [Leadbetterella
           byssophila DSM 17132]
          Length = 225

 Score =  193 bits (491), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 85/188 (45%), Positives = 137/188 (72%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           + P ++E+      + D++SRL+ +RI+FV   I+D +A ++ AQLLFLE+ + +K+I +
Sbjct: 33  MTPNIIEERPMRFAAIDVFSRLIMDRIIFVGTGIDDQVANIVVAQLLFLESVDAKKDILM 92

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG V AG+ +YDTMQ+++P ++T C   AASMG++LL+ G  G R ALP+AR+++
Sbjct: 93  YLNSPGGSVYAGLGMYDTMQYVRPEVATICTSLAASMGAVLLAGGAAGKRTALPHARVMI 152

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQ+ D+E   + I+++++ L EI  ++ GKT+EE+E+  DRD+ M A EA  
Sbjct: 153 HQPSGGAQGQSRDMEITVKQIIELRKELYEILAQHTGKTFEEIERDSDRDYWMKAEEAKA 212

Query: 198 WGVVDKVL 205
           +G++D+VL
Sbjct: 213 YGLIDEVL 220


>gi|238062482|ref|ZP_04607191.1| endopeptidase Clp [Micromonospora sp. ATCC 39149]
 gi|237884293|gb|EEP73121.1| endopeptidase Clp [Micromonospora sp. ATCC 39149]
          Length = 212

 Score =  193 bits (491), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 87/190 (45%), Positives = 136/190 (71%), Gaps = 3/190 (1%)

Query: 23  VEQTNRGERSYD--IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           V   N G+ S+D  ++ +LL+ERI+F+  ++ D  A  ICAQLL L AE+ +++I LYIN
Sbjct: 20  VRMRNGGQPSFDDQVFQQLLRERIIFLGTEVTDESANQICAQLLLLAAEDSERDIHLYIN 79

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGG V+AGMA+YDTM++++  ++T  +G A SMG  LL AG  G R+ALP++RI++HQP
Sbjct: 80  SPGGSVSAGMAVYDTMRYVRNDVATLALGMAGSMGQFLLCAGTAGKRYALPHSRIMMHQP 139

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
           SGGF G  +DI   A++++ +KR + E+  ++ G+T E++ +  DRD   +A EA ++G+
Sbjct: 140 SGGFGGTVADITIQAENMLHVKRTMQELIARHSGRTLEQIRQDWDRDRWFTAEEAREYGL 199

Query: 201 VDKVLMSRID 210
           VD+VL +R+D
Sbjct: 200 VDQVL-TRVD 208


>gi|260578314|ref|ZP_05846230.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Corynebacterium jeikeium ATCC 43734]
 gi|258603616|gb|EEW16877.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Corynebacterium jeikeium ATCC 43734]
          Length = 188

 Score =  193 bits (491), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 90/173 (52%), Positives = 123/173 (71%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL+ERI+F+  Q++D +A  +CAQ+L L AE+P ++ISLYINSPGG VTAGMAIYD
Sbjct: 12  VYERLLRERIIFLGSQVDDEIANELCAQILLLSAEDPTRDISLYINSPGGSVTAGMAIYD 71

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM++    I+T+ MG AASMG  LLSAG KG R+ALP+ARI++HQPS G  G A+DI   
Sbjct: 72  TMKYAPCDIATYGMGLAASMGQFLLSAGTKGKRYALPHARIMMHQPSAGVGGTAADIAIQ 131

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+     KR + E+  +  G+T E++ K  DRD   +A +A ++G VD V+ S
Sbjct: 132 AEQFAYTKREMAELIAEFTGQTVEQITKDSDRDRWFTAEQAKEYGFVDHVITS 184


>gi|68535616|ref|YP_250321.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           jeikeium K411]
 gi|109878151|sp|Q4JWV4|CLPP1_CORJK RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|68263215|emb|CAI36703.1| ATP-dependent Clp protease proteolytic subunit 1 [Corynebacterium
           jeikeium K411]
          Length = 188

 Score =  193 bits (491), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 90/173 (52%), Positives = 123/173 (71%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL+ERI+F+  Q++D +A  +CAQ+L L AE+P ++ISLYINSPGG VTAGMAIYD
Sbjct: 12  VYERLLRERIIFLGSQVDDEIANELCAQILLLSAEDPTRDISLYINSPGGSVTAGMAIYD 71

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM++    I+T+ MG AASMG  LLSAG KG R+ALP+ARI++HQPS G  G A+DI   
Sbjct: 72  TMKYAPCDIATYGMGLAASMGQFLLSAGTKGKRYALPHARIMMHQPSAGVGGTAADIAIQ 131

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+     KR + E+  +  G+T E++ K  DRD   +A +A ++G VD V+ S
Sbjct: 132 AEQFAYTKREMAELIAEFTGQTVEQITKDSDRDRWFTAQQAKEYGFVDHVITS 184


>gi|294672820|ref|YP_003573436.1| ATP-dependent Clp protease proteolytic subunit ClpP [Prevotella
           ruminicola 23]
 gi|294471657|gb|ADE81046.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Prevotella
           ruminicola 23]
          Length = 192

 Score =  193 bits (491), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 90/189 (47%), Positives = 135/189 (71%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  QI+D+ A  + AQLLFL++ +P K+IS+YI
Sbjct: 3   PYILEERQLNVTQMDVFSRLMMDRIIFLGTQIDDYTANTLQAQLLFLDSTDPGKDISIYI 62

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VTAG+ IYDTMQFI   ++T C G AASMG++LL AG +G R ALP++R+++HQ
Sbjct: 63  NSPGGSVTAGLGIYDTMQFITSDVATICTGMAASMGAVLLVAGAEGKRSALPHSRVMIHQ 122

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I+K K+ L  I  ++    Y++V    DR++ M+A EA  +G
Sbjct: 123 PLGGVQGQASDIEIEAKEILKFKKELYTIISEHSHTPYDKVYADSDRNYWMTAEEAKAYG 182

Query: 200 VVDKVLMSR 208
           ++D+VL+ +
Sbjct: 183 MIDEVLIRK 191


>gi|261880040|ref|ZP_06006467.1| ATP-dependent Clp protease proteolytic subunit [Prevotella
           bergensis DSM 17361]
 gi|270333280|gb|EFA44066.1| ATP-dependent Clp protease proteolytic subunit [Prevotella
           bergensis DSM 17361]
          Length = 232

 Score =  193 bits (491), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 91/199 (45%), Positives = 139/199 (69%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P ++E+        D++SRL+ +RI+F+  +++D+ A  + AQLL+L++ + +K+IS+
Sbjct: 31  LNPYILEERQLNVTQMDVFSRLMMDRIIFLGTEVDDYTANTLQAQLLYLDSVDNEKDISI 90

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+ IYDTMQFI   ++T C G AASMG++LL +G +G R ALP+AR+++
Sbjct: 91  YINSPGGSVTAGLGIYDTMQFISSSVATICTGMAASMGAVLLVSGAEGKRAALPHARVMI 150

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I+K K+ L  I   +  ++YE+V K  DR++ M+A EA  
Sbjct: 151 HQPLGGVQGQASDIEIEAREILKFKKELYTIIANHSHQSYEKVWKDSDRNYWMNAEEAKA 210

Query: 198 WGVVDKVLMSRIDIEEKSK 216
           +G++D VL  + +  E  K
Sbjct: 211 YGMIDMVLTRKNNETENGK 229


>gi|302545416|ref|ZP_07297758.1| Clp protease [Streptomyces hygroscopicus ATCC 53653]
 gi|302463034|gb|EFL26127.1| Clp protease [Streptomyces himastatinicus ATCC 53653]
          Length = 204

 Score =  193 bits (490), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 96/189 (50%), Positives = 127/189 (67%), Gaps = 1/189 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P    +   G     +Y+RLL ERI+F+   ++D +A  I AQLL L A+ P K+I+LY
Sbjct: 5   MPSAAGEPTGGGLGDQVYNRLLGERIIFLGQPVDDEIANKITAQLLLLAAD-PDKDINLY 63

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG ++AGMAIYDTMQFI   + T  MG AASMG  LLSAG  G RFALPNA IL+H
Sbjct: 64  INSPGGSISAGMAIYDTMQFIPNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIH 123

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPS G +G ASDI+ HA+ ++  KRR+ E+   + G+T E++ +  DRD   SA EA  +
Sbjct: 124 QPSAGLAGSASDIKIHAERLLHTKRRMAELTAFHTGQTVEQITRDSDRDRWFSAEEAKAY 183

Query: 199 GVVDKVLMS 207
           G+VD V+ S
Sbjct: 184 GLVDDVMAS 192


>gi|227504047|ref|ZP_03934096.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           striatum ATCC 6940]
 gi|227199377|gb|EEI79425.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           striatum ATCC 6940]
          Length = 199

 Score =  193 bits (490), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 87/173 (50%), Positives = 126/173 (72%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL+ERI+F+  Q++D +A  +CAQ+L L AE+P ++ISLYINSPGG VTAGMAIYD
Sbjct: 20  VYERLLRERIIFLGTQVDDEIANKLCAQILLLSAEDPTRDISLYINSPGGSVTAGMAIYD 79

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM++    I+T+ MG AASMG  LLS G KG R+ALP+ARI++HQPS G  G A+DI   
Sbjct: 80  TMKYSPCDIATYGMGLAASMGQFLLSGGTKGKRYALPHARIMMHQPSAGVGGTAADIAIQ 139

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+   + KR + ++  ++ G+++E++ K  DRD   +A +A ++G+VD V+ S
Sbjct: 140 AEQFAQTKREMAQLIAEHTGQSFEQITKDSDRDRWFTAQQAKEYGIVDHVIES 192


>gi|172041060|ref|YP_001800774.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           urealyticum DSM 7109]
 gi|171852364|emb|CAQ05340.1| ATP-dependent Clp protease proteolytic subunit 1 [Corynebacterium
           urealyticum DSM 7109]
          Length = 198

 Score =  193 bits (490), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 90/173 (52%), Positives = 123/173 (71%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           ++ RLL+ERI+F+  Q++D +A  +CAQ+L L AE+P+K+ISLYINSPGG VTAGMAI+D
Sbjct: 22  VFERLLRERIIFLGSQVDDEIANKLCAQILLLAAEDPEKDISLYINSPGGSVTAGMAIFD 81

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ+    I+T+ MG AASMG  LLSAG KG R+ALP+ARI++HQPS G  G A+DI   
Sbjct: 82  TMQYAPCDIATYGMGLAASMGQFLLSAGTKGKRYALPHARIMMHQPSAGVGGTAADIAIQ 141

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+     KR + E+     G+T E++ K  DRD   +A +A ++G VD V+ S
Sbjct: 142 AEQFAHTKREMAELIAGFTGQTVEQITKDSDRDRWFTAEQAKEYGFVDHVISS 194


>gi|305681092|ref|ZP_07403899.1| endopeptidase Clp [Corynebacterium matruchotii ATCC 14266]
 gi|305659297|gb|EFM48797.1| endopeptidase Clp [Corynebacterium matruchotii ATCC 14266]
          Length = 191

 Score =  193 bits (490), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 86/173 (49%), Positives = 125/173 (72%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL++RI+F+  Q++D +A  +CAQ+L L AE+P ++ISLYINSPGG VTAGMAIYD
Sbjct: 12  VYERLLRDRIIFLGTQVDDEIANKLCAQILLLSAEDPTRDISLYINSPGGSVTAGMAIYD 71

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM +    I+T+ MG AASMG  LL+ G KG R+ALP+ARI++HQPS G  G A+DI   
Sbjct: 72  TMTYSPCDIATYAMGLAASMGQFLLTGGTKGKRYALPHARIMMHQPSAGVGGTAADIAIQ 131

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+   + KR + E+  ++ G+T+E++ K  DRD   +A +A ++G+VD V+ +
Sbjct: 132 AEQFAQTKREMAELIAEHSGQTFEQITKDSDRDRWFTAQQALEYGLVDHVITA 184


>gi|239979447|ref|ZP_04701971.1| ATP dependent Clp protease proteolytic subunit 1 [Streptomyces
           albus J1074]
          Length = 201

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 92/177 (51%), Positives = 128/177 (72%), Gaps = 1/177 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y+RLL ERI+F+   ++D +A  I AQLL L A +P K+I+LYINSPGG ++AGMAIYD
Sbjct: 18  VYNRLLGERIIFLGQPVDDDIANKITAQLLLL-ASDPDKDINLYINSPGGSISAGMAIYD 76

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQFIK  + T  MG AASMG  LLSAG  G RFALPNA IL+HQPS G +G ASDI+ H
Sbjct: 77  TMQFIKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIH 136

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           A+ ++  K+R+ E+   + G++ E++ +  DRD   SA EA ++G++D+V+ S  ++
Sbjct: 137 AERLLHTKKRMAELTAFHTGQSVEQITRDSDRDRWFSADEAKEYGLIDEVIASAANV 193


>gi|291451317|ref|ZP_06590707.1| ATP dependent Clp protease proteolytic subunit 1 [Streptomyces
           albus J1074]
 gi|291354266|gb|EFE81168.1| ATP dependent Clp protease proteolytic subunit 1 [Streptomyces
           albus J1074]
          Length = 219

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 92/177 (51%), Positives = 128/177 (72%), Gaps = 1/177 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y+RLL ERI+F+   ++D +A  I AQLL L A +P K+I+LYINSPGG ++AGMAIYD
Sbjct: 36  VYNRLLGERIIFLGQPVDDDIANKITAQLLLL-ASDPDKDINLYINSPGGSISAGMAIYD 94

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQFIK  + T  MG AASMG  LLSAG  G RFALPNA IL+HQPS G +G ASDI+ H
Sbjct: 95  TMQFIKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIH 154

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           A+ ++  K+R+ E+   + G++ E++ +  DRD   SA EA ++G++D+V+ S  ++
Sbjct: 155 AERLLHTKKRMAELTAFHTGQSVEQITRDSDRDRWFSADEAKEYGLIDEVIASAANV 211


>gi|194212522|ref|XP_001496091.2| PREDICTED: similar to ClpP caseinolytic peptidase, ATP-dependent,
           proteolytic subunit homolog (E. coli) [Equus caballus]
          Length = 298

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 89/157 (56%), Positives = 127/157 (80%)

Query: 50  QIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMG 109
           QI+D +A+L+ AQLLFL++E+ +K I +YINSPGGVVT+G+AIYDTMQ+I  PI T+C+G
Sbjct: 112 QIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTSGLAIYDTMQYILNPICTWCVG 171

Query: 110 QAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIY 169
           QAASMGSLLL+AG  GMR +LPN+RI++HQPSGG  GQA+DI   A++I+K+K++L  IY
Sbjct: 172 QAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYSIY 231

Query: 170 VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
            K+  ++ + +E  ++RD  MS  EA ++G++DKVL+
Sbjct: 232 AKHTKQSLQVIESVMERDRYMSPMEAQEFGILDKVLV 268


>gi|25028868|ref|NP_738922.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           efficiens YS-314]
 gi|259507930|ref|ZP_05750830.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Corynebacterium efficiens YS-314]
 gi|67460556|sp|Q8FN36|CLPP2_COREF RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|23494155|dbj|BAC19122.1| putative endopeptidase Clp chain P1 [Corynebacterium efficiens
           YS-314]
 gi|259164425|gb|EEW48979.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Corynebacterium efficiens YS-314]
          Length = 199

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 89/174 (51%), Positives = 126/174 (72%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           S DI+ RLL+ERI+F+  Q++D +A  +CAQ+L L AE+P ++ISLYINSPGG VTAGMA
Sbjct: 17  SGDIFDRLLRERIIFLGSQVDDEIANKLCAQILLLSAEDPTRDISLYINSPGGSVTAGMA 76

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYDTM++    I+T+ MG AASMG  LLS G  G R+ALP+ARI++HQPS G  G A+DI
Sbjct: 77  IYDTMKYSPCDIATYGMGLAASMGQFLLSGGTPGKRYALPHARIMMHQPSAGVGGTAADI 136

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
              A+   + KR + ++  ++ G+T+E+V K  DRD   +A +A ++G+VD V+
Sbjct: 137 AIQAEQFAQTKREMAKLIAEHTGQTFEQVTKDSDRDRWFTAEQAKEYGLVDHVI 190


>gi|300934280|ref|ZP_07149536.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           resistens DSM 45100]
          Length = 198

 Score =  192 bits (489), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 90/173 (52%), Positives = 123/173 (71%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           ++ RLL+ERI+F+  Q++D +A  +CAQ+L L AE+P K+ISLYINSPGG VTAGMAIYD
Sbjct: 22  VFERLLRERIIFLGSQVDDEIANKLCAQILLLAAEDPNKDISLYINSPGGSVTAGMAIYD 81

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM++    I+T+ MG AASMG  LLSAG KG R+ALP+ARI++HQPS G  G A+DI   
Sbjct: 82  TMRYAPCDIATYGMGLAASMGQFLLSAGTKGKRYALPHARIMMHQPSAGVGGTAADIAIQ 141

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+     KR + E+  +  G+T E++ K  DRD   +A +A ++G VD V+ S
Sbjct: 142 AEQFAYTKREMAELIAEFTGQTVEQITKDSDRDRWFTAEQAKEYGFVDHVITS 194


>gi|225012269|ref|ZP_03702706.1| Endopeptidase Clp [Flavobacteria bacterium MS024-2A]
 gi|225003824|gb|EEG41797.1| Endopeptidase Clp [Flavobacteria bacterium MS024-2A]
          Length = 221

 Score =  192 bits (489), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 91/194 (46%), Positives = 136/194 (70%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           +++   + P ++E+        D++SRL+ +RI+F+   I+D++A +I AQLLFL++ + 
Sbjct: 23  DNIVSSMTPYIIEERQMNVAQMDVFSRLMMDRIMFLGTGIDDNVANIIQAQLLFLQSTDA 82

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            ++I +YINSPGG V AG+ IYDTMQFI P ++T C G AASMG++LL AG +G R ALP
Sbjct: 83  NRDIQMYINSPGGSVYAGLGIYDTMQFISPNVATICTGIAASMGAVLLCAGHEGKRSALP 142

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           +AR+++HQP GG  GQASDIE   ++I+K+K  L +I  K+ G+  E+V    DRD+ M 
Sbjct: 143 HARVMIHQPLGGAQGQASDIEITTREILKLKDELYQIISKHSGQKMEKVTHDSDRDYWMK 202

Query: 192 ASEACDWGVVDKVL 205
           A EA  +G+VD+VL
Sbjct: 203 AEEAKAYGMVDEVL 216


>gi|225021668|ref|ZP_03710860.1| hypothetical protein CORMATOL_01696 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945659|gb|EEG26868.1| hypothetical protein CORMATOL_01696 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 191

 Score =  192 bits (489), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 86/173 (49%), Positives = 125/173 (72%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL++RI+F+  Q++D +A  +CAQ+L L AE+P ++ISLYINSPGG VTAGMAIYD
Sbjct: 12  VYERLLRDRIIFLGTQVDDEIANKLCAQILLLSAEDPTRDISLYINSPGGSVTAGMAIYD 71

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM +    I+T+ MG AASMG  LL+ G KG R+ALP+ARI++HQPS G  G A+DI   
Sbjct: 72  TMTYSPCDIATYAMGLAASMGQFLLTGGTKGKRYALPHARIMMHQPSAGVGGTAADIAIQ 131

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+   + KR + E+  ++ G+T+E++ K  DRD   +A +A ++G+VD V+ +
Sbjct: 132 AEQFAQTKREMAELIAEHSGQTFEQITKDSDRDRWFTAQQALEYGLVDHVVTA 184


>gi|302404698|ref|XP_003000186.1| ATP-dependent Clp protease proteolytic subunit [Verticillium
           albo-atrum VaMs.102]
 gi|261360843|gb|EEY23271.1| ATP-dependent Clp protease proteolytic subunit [Verticillium
           albo-atrum VaMs.102]
          Length = 238

 Score =  192 bits (489), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 90/190 (47%), Positives = 135/190 (71%), Gaps = 7/190 (3%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           DI+S+LL+ERI+ + G I+D ++  I AQLL+LE++NP K I+LYINSPGG VT+G+AIY
Sbjct: 41  DIFSKLLQERIICLNGAIDDTVSASIVAQLLWLESDNPDKAITLYINSPGGSVTSGLAIY 100

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           DTM +IK P+ST C+G A+SMG+LLL+ GE G R+ALP++ +++HQP GG  GQASDI  
Sbjct: 101 DTMTYIKSPVSTVCLGAASSMGALLLTGGEAGKRYALPHSSVMIHQPLGGTQGQASDILI 160

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTY-------EEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           +A  I +++ +LNEI  ++    +        EV   ++RD  ++  EA + GV+D++L 
Sbjct: 161 YAHQIQRVRTKLNEIMRRHLNAAFGRDRYSLAEVNDMMERDKYLTPEEAKEMGVIDEILT 220

Query: 207 SRIDIEEKSK 216
            R + +EK +
Sbjct: 221 RRTEKDEKER 230


>gi|294786961|ref|ZP_06752215.1| Clp protease [Parascardovia denticolens F0305]
 gi|315226600|ref|ZP_07868388.1| ATP-dependent Clp protease proteolytic subunit [Parascardovia
           denticolens DSM 10105]
 gi|294485794|gb|EFG33428.1| Clp protease [Parascardovia denticolens F0305]
 gi|315120732|gb|EFT83864.1| ATP-dependent Clp protease proteolytic subunit [Parascardovia
           denticolens DSM 10105]
          Length = 206

 Score =  192 bits (489), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 87/173 (50%), Positives = 128/173 (73%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I+SRLLK+RI+++  +++D  A +ICAQ+L L AE+P+K+I LYINSPGG +TAGMAIYD
Sbjct: 23  IFSRLLKDRIIWLGSEVKDENANVICAQMLMLAAEDPKKDIWLYINSPGGSITAGMAIYD 82

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ I+P ++T  +G AASMG  LLS+G KG RF   +AR+L+HQPSGG  G A+D+  +
Sbjct: 83  TMQLIEPDVATVAVGMAASMGQFLLSSGTKGKRFITSHARVLMHQPSGGVGGTATDVRIN 142

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+ I+ +K+ L+E+  +  G T EE+ +  + DH  +A +A D+G VDK++ +
Sbjct: 143 AELIMDMKKTLSELTAEQTGHTVEEIYRDNEYDHWFTAQQALDYGFVDKIVTT 195


>gi|219820815|gb|ACL37528.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes]
 gi|219820817|gb|ACL37529.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes]
 gi|219820819|gb|ACL37530.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes]
 gi|219820821|gb|ACL37531.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes]
 gi|219820823|gb|ACL37532.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes]
 gi|219820825|gb|ACL37533.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes]
 gi|219820827|gb|ACL37534.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes]
 gi|219820829|gb|ACL37535.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes]
 gi|219820831|gb|ACL37536.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes]
 gi|219820833|gb|ACL37537.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes]
 gi|219820835|gb|ACL37538.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes]
 gi|219820837|gb|ACL37539.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes]
 gi|219820839|gb|ACL37540.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes]
 gi|219820841|gb|ACL37541.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes]
 gi|219820843|gb|ACL37542.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes]
 gi|219820845|gb|ACL37543.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes]
 gi|219820847|gb|ACL37544.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes]
 gi|219820849|gb|ACL37545.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes]
 gi|219820851|gb|ACL37546.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes]
 gi|219820853|gb|ACL37547.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes]
          Length = 151

 Score =  192 bits (489), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 89/150 (59%), Positives = 116/150 (77%)

Query: 29  GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTA 88
           GER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL+A++P+K+I LYINSPGG ++A
Sbjct: 1   GERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDIFLYINSPGGSISA 60

Query: 89  GMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQA 148
           GMAIYDTM F+K  + T  MG AASMGS LL+AG  G RFALPNA I++HQP GG  GQA
Sbjct: 61  GMAIYDTMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEIMIHQPLGGAQGQA 120

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYE 178
           ++IE  A+ I+KIK R+N I  +  G+ YE
Sbjct: 121 TEIEIAARHILKIKERMNTIMAEKTGQPYE 150


>gi|260060592|ref|YP_003193672.1| ATP-dependent Clp protease, proteolytic subunit [Robiginitalea
           biformata HTCC2501]
 gi|88784722|gb|EAR15891.1| ATP-dependent Clp protease, proteolytic subunit [Robiginitalea
           biformata HTCC2501]
          Length = 195

 Score =  192 bits (489), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 87/190 (45%), Positives = 135/190 (71%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +G+ P ++E+      + D++SRL+ +RI+F+   I D +A ++ AQLLFL + +  K+I
Sbjct: 1   MGMTPNIIEERQLNAIAMDVFSRLMMDRIIFLGTGISDQVANIVQAQLLFLASADSSKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG V AG+ IYDTMQFIKP ++T C G AASM ++LL AGEKG R  L ++R+
Sbjct: 61  QIYINSPGGSVYAGLGIYDTMQFIKPDVATICTGMAASMAAVLLCAGEKGKRSGLQHSRV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP  G  GQASDIE  A++++KIK  L +I  K+ G+ ++ +++  DRD+ M A EA
Sbjct: 121 MIHQPLSGAQGQASDIEIAAREVLKIKDELYQIISKHSGQPFDRIQEDSDRDYWMKAGEA 180

Query: 196 CDWGVVDKVL 205
            ++G++D++L
Sbjct: 181 LEYGMIDEIL 190


>gi|224013265|ref|XP_002295284.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220969007|gb|EED87350.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 198

 Score =  192 bits (489), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 88/183 (48%), Positives = 130/183 (71%)

Query: 26  TNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV 85
            + G    D+ SRLL++RI+ +   ++D +A ++ AQLL+L  E+P K+I+LYINSPGG 
Sbjct: 4   VDDGTSQKDVLSRLLQDRIILLGQGVDDEIANVLVAQLLYLANEDPTKDITLYINSPGGS 63

Query: 86  VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS 145
           V+AGMAIYDTMQ++   +ST C G AASMG+ LL AG  G R ALPNARI++HQP GG  
Sbjct: 64  VSAGMAIYDTMQYVPCDVSTVCFGMAASMGAFLLGAGAPGKRRALPNARIMIHQPLGGAQ 123

Query: 146 GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           GQA+DIE  A++I+ I+  LN    + C +  +++E   DRD  M+A EA D+G++D+++
Sbjct: 124 GQAADIEIQAKEILFIREVLNTYIAEYCDQPKDKIEADCDRDFFMTAEEAVDYGIIDEMI 183

Query: 206 MSR 208
           +++
Sbjct: 184 VTK 186


>gi|229496588|ref|ZP_04390302.1| Clp protease [Porphyromonas endodontalis ATCC 35406]
 gi|229316485|gb|EEN82404.1| Clp protease [Porphyromonas endodontalis ATCC 35406]
          Length = 228

 Score =  192 bits (489), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 90/186 (48%), Positives = 132/186 (70%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+   ++D+ A +I AQLLFL++ +P K+IS+YI
Sbjct: 35  PTIIEERQLNVAQMDVFSRLMMDRIIFLGAGVDDYTANVIQAQLLFLDSSDPGKDISIYI 94

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V AG  IYDTMQ+I   +ST C G AASM ++LL AG  G RFALP++R+++HQ
Sbjct: 95  NSPGGSVYAGYGIYDTMQYISCDVSTICTGMAASMAAVLLVAGSHGKRFALPHSRVMIHQ 154

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I+++K  L +I  ++ G+  E +E+  DRD  M+A EA  +G
Sbjct: 155 PLGGMQGQASDIEIAAKEILRVKGELYKIISEHSGQPLEVIERDSDRDKWMTAEEAQAYG 214

Query: 200 VVDKVL 205
           ++DKVL
Sbjct: 215 MIDKVL 220


>gi|170781893|ref|YP_001710225.1| ATP-dependent Clp protease proteolytic subunit [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169156461|emb|CAQ01609.1| ATP dependent Clp protease proteolytic subunit 1 [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 200

 Score =  192 bits (489), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 91/177 (51%), Positives = 124/177 (70%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           ++ RLLK+RI+++  ++ D  A  ICA++L L AE+ +K+I LYINSPGG +TAGMAIYD
Sbjct: 15  VFDRLLKDRIIWLGSEVRDDNANEICAKILLLAAEDSEKDIFLYINSPGGSITAGMAIYD 74

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQF+   I T  +G AASMG LLL++G KG R+  PNAR+LLHQP GGF G +SDI+  
Sbjct: 75  TMQFVPNDIVTVGIGMAASMGQLLLTSGTKGKRYITPNARVLLHQPHGGFGGTSSDIQTQ 134

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           AQ I+ +K+RL EI     GKT E++ +  DRD   +A EA ++G VD +  S  D+
Sbjct: 135 AQLILSMKQRLAEITAGQTGKTAEQINEDGDRDRWFTAQEALEYGFVDHIRESATDV 191


>gi|148272644|ref|YP_001222205.1| ATP-dependent Clp protease proteolytic subunit [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147830574|emb|CAN01509.1| ATP-dependent protease, proteolytic subunit [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 195

 Score =  192 bits (489), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 91/177 (51%), Positives = 124/177 (70%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           ++ RLLK+RI+++  ++ D  A  ICA++L L AE+ +K+I LYINSPGG +TAGMAIYD
Sbjct: 10  VFDRLLKDRIIWLGSEVRDDNANEICAKILLLAAEDSEKDIFLYINSPGGSITAGMAIYD 69

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQF+   I T  +G AASMG LLL++G KG R+  PNAR+LLHQP GGF G +SDI+  
Sbjct: 70  TMQFVPNDIVTVGIGMAASMGQLLLTSGTKGKRYITPNARVLLHQPHGGFGGTSSDIQTQ 129

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           AQ I+ +K+RL EI     GKT E++ +  DRD   +A EA ++G VD +  S  D+
Sbjct: 130 AQLILSMKQRLAEITAGQTGKTAEQINEDGDRDRWFTAQEALEYGFVDHIRESATDV 186


>gi|237785951|ref|YP_002906656.1| ATP-dependent Clp protease proteolytic subunit 1 [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758863|gb|ACR18113.1| ATP-dependent Clp protease proteolytic subunit 1 [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 212

 Score =  192 bits (489), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 89/173 (51%), Positives = 122/173 (70%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           ++ RLL+ERI+F+  ++ D +A  +CAQ+L L AE+P ++ISLYINSPGG VTAGMAIYD
Sbjct: 34  VFERLLRERIIFLGTEVNDDIANRLCAQILLLSAEDPTRDISLYINSPGGSVTAGMAIYD 93

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM +    I+T+ MG AASMG  LL+AG KG R+ALP+ARIL+HQPS G  G A+DI   
Sbjct: 94  TMTYAPCDIATYGMGLAASMGQFLLTAGTKGKRYALPHARILMHQPSAGVGGTAADIAIQ 153

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+   + KR L E+  ++ G++ E ++K  DRD    A EA ++G VD V+ S
Sbjct: 154 AEQFARTKRDLAELNAQHTGQSLERIQKDSDRDRWFDAQEALEYGFVDHVITS 206


>gi|255532968|ref|YP_003093340.1| endopeptidase Clp [Pedobacter heparinus DSM 2366]
 gi|255345952|gb|ACU05278.1| Endopeptidase Clp [Pedobacter heparinus DSM 2366]
          Length = 230

 Score =  192 bits (488), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 89/188 (47%), Positives = 134/188 (71%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           + P ++E+        D++SRL+ +RI+F+   I D  A +I AQLLFL++ +  ++I +
Sbjct: 37  MTPYIIEERQLNVAQMDVFSRLMMDRIIFLGDAIYDGNANIIQAQLLFLQSTDNNRDIQI 96

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+ IYDTMQ+I P ++T C G AASMG++LL AG KG R ALP++R+++
Sbjct: 97  YINSPGGSVYAGLGIYDTMQYIAPDVATICTGMAASMGAVLLVAGAKGKRAALPHSRVMI 156

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  G ASD+E + ++++K+K+ L +I   + G++YE VEK  DRD+ M A EA  
Sbjct: 157 HQPSGGAQGVASDMEINLREMLKLKKELYDIISNHSGQSYEWVEKASDRDYWMKAEEAKG 216

Query: 198 WGVVDKVL 205
           +G++D+VL
Sbjct: 217 FGMIDEVL 224


>gi|312373461|gb|EFR21200.1| hypothetical protein AND_17405 [Anopheles darlingi]
          Length = 185

 Score =  192 bits (488), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 87/157 (55%), Positives = 122/157 (77%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM 108
           G + D +++LI AQLLFL++EN  K I +YINSPGG VTAG+AIYDTMQ++KPP++T+C+
Sbjct: 2   GPVHDDLSSLIVAQLLFLQSENGTKPIHMYINSPGGSVTAGLAIYDTMQYVKPPVATWCV 61

Query: 109 GQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           GQA SMGSLLL+AG  GMR +LPNARI++HQPSGG  GQA+DI+  A++I+K+K++L EI
Sbjct: 62  GQACSMGSLLLAAGAPGMRHSLPNARIMIHQPSGGAQGQATDIQIQAEEILKLKKQLTEI 121

Query: 169 YVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           Y K+   + + +   ++RD  +S  EA   G++D VL
Sbjct: 122 YGKHTKTSIDVLYSKMERDTFLSPEEAQALGIIDTVL 158


>gi|124023703|ref|YP_001018010.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus str. MIT 9303]
 gi|123963989|gb|ABM78745.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9303]
          Length = 200

 Score =  192 bits (488), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 92/177 (51%), Positives = 134/177 (75%), Gaps = 1/177 (0%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ER  DIY+RL  ERI+F+  ++ D +A  + AQ+L+L++E+  K I LYINSPGG VTAG
Sbjct: 18  ERWVDIYTRLGVERILFLGQEVSDGVANSLVAQMLYLDSEDSTKPIYLYINSPGGSVTAG 77

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG-QA 148
           +AIYDTM+++K  + T C+G AASMG+ LL+AG KG R ALP++RI++HQP GG +  QA
Sbjct: 78  LAIYDTMKYVKSDVVTICVGLAASMGAFLLTAGTKGKRLALPHSRIMIHQPLGGTNQRQA 137

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           SDIE  A++I++IK  LN    +  G+T+E++EK  DRD+ +SA+EA D+G++D+V+
Sbjct: 138 SDIEIEAREILRIKDMLNHSMAELTGQTFEKIEKDTDRDYFLSAAEAKDYGLIDRVI 194


>gi|307705249|ref|ZP_07642116.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus mitis
           SK597]
 gi|307621198|gb|EFO00268.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus mitis
           SK597]
          Length = 202

 Score =  192 bits (488), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 93/196 (47%), Positives = 138/196 (70%), Gaps = 8/196 (4%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE------NP 71
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A+      + 
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQVFLDAQDS 60

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+I LY+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LP
Sbjct: 61  TKDIYLYVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLP 120

Query: 132 NARILLHQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           NA  ++HQP    G   Q +D+   A+ ++K +  L +I  +N G++ E+V    +RD+ 
Sbjct: 121 NAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNTLEKILAENSGQSIEKVHADAERDNW 180

Query: 190 MSASEACDWGVVDKVL 205
           MSA E  ++G +D+++
Sbjct: 181 MSAQETLEYGFIDEIM 196


>gi|309777267|ref|ZP_07672229.1| Clp protease [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914947|gb|EFP60725.1| Clp protease [Erysipelotrichaceae bacterium 3_1_53]
          Length = 189

 Score =  192 bits (488), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 93/188 (49%), Positives = 130/188 (69%), Gaps = 1/188 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            VP ++E+    ER YD+YS LLKERI+ +TG+I+D M++ ICAQLL+L + N  + I +
Sbjct: 3   FVPTIIERNASSERVYDLYSCLLKERIIILTGEIDDAMSSSICAQLLYLSSMN-NEPIQM 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG+AIYD M++I+  +ST CMG  ASM ++LLSAG +G R AL N+ I++
Sbjct: 62  YINSPGGSVSAGLAIYDIMKYIRCDVSTICMGICASMAAVLLSAGTRGKRSALSNSEIMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA D+E  A  I K+K RL  I  +N  +  E + +  DRD  M ASEA  
Sbjct: 122 HQPMGGMQGQAKDMEIAALHIQKLKERLYSILSENTHQNIETLRQDCDRDCYMDASEALA 181

Query: 198 WGVVDKVL 205
           +G++D ++
Sbjct: 182 YGLIDTII 189


>gi|160916260|ref|ZP_02078467.1| hypothetical protein EUBDOL_02287 [Eubacterium dolichum DSM 3991]
 gi|158431984|gb|EDP10273.1| hypothetical protein EUBDOL_02287 [Eubacterium dolichum DSM 3991]
          Length = 204

 Score =  192 bits (488), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 93/202 (46%), Positives = 138/202 (68%), Gaps = 1/202 (0%)

Query: 8   KKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           +++ E ++L +VP ++E+   GE +YD+YS LLKERI+ + G+I+D M+  ICAQLL+L 
Sbjct: 2   EREKEVIYLVIVPTIIEKNINGEHAYDLYSCLLKERIIILCGEIDDAMSASICAQLLYL- 60

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           +   +  I LYINS GG VTAG+AIYD M +I   +ST CMG  ASM ++LL AG  G R
Sbjct: 61  STCSKAPIQLYINSNGGSVTAGLAIYDIMHYIPCEVSTICMGMCASMAAVLLCAGSNGKR 120

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           FAL N+ I++HQP GG  GQA D+E  AQ I ++K +L +I  K+  +  + + +  DRD
Sbjct: 121 FALANSEIMIHQPLGGMQGQAIDMEIAAQHIQQVKEKLYQILCKHTKQDKDIIIRDCDRD 180

Query: 188 HIMSASEACDWGVVDKVLMSRI 209
             M+A +A D+G+VD+++ + I
Sbjct: 181 FYMNAKQALDYGMVDEIITNPI 202


>gi|329934560|ref|ZP_08284601.1| ATP dependent Clp protease proteolytic subunit 1 [Streptomyces
           griseoaurantiacus M045]
 gi|329305382|gb|EGG49238.1| ATP dependent Clp protease proteolytic subunit 1 [Streptomyces
           griseoaurantiacus M045]
          Length = 206

 Score =  192 bits (488), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 92/171 (53%), Positives = 124/171 (72%), Gaps = 1/171 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y+RLL ERI+F+   ++D +A  I AQLL L A+ P+K+I+LYINSPGG +TAGMAIYD
Sbjct: 22  VYNRLLGERIIFLGQPVDDDIANKITAQLLLLAAD-PEKDINLYINSPGGSITAGMAIYD 80

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQFIK  + T  MG AASMG  LLSAG  G RFALPNA IL+HQPS G +G ASDI+ H
Sbjct: 81  TMQFIKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIH 140

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+ ++  K+R+ E+   + G+T E++ +  DRD    A EA ++G++D V+
Sbjct: 141 AERLLHTKKRMAELTSHHTGQTVEQITRDSDRDRWFDAYEAKEYGLIDDVI 191


>gi|290960370|ref|YP_003491552.1| ATP dependent Clp protease proteolytic subunit 1 [Streptomyces
           scabiei 87.22]
 gi|260649896|emb|CBG73012.1| ATP dependent Clp protease proteolytic subunit 1 [Streptomyces
           scabiei 87.22]
          Length = 207

 Score =  192 bits (488), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 93/171 (54%), Positives = 123/171 (71%), Gaps = 1/171 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y+RLL ERI+F+   ++D +A  I AQLL L A+ P K+I LYINSPGG +TAGMAIYD
Sbjct: 22  VYNRLLNERIIFLGQPVDDDIANKITAQLLLLAAD-PDKDIYLYINSPGGSITAGMAIYD 80

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQFIK  + T  MG AASMG  LLSAG  G RFALPNA IL+HQPS G +G ASDI+ H
Sbjct: 81  TMQFIKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIH 140

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+ ++  K+R+ E+  ++ G+T E+V +  DRD    A EA ++G++D V+
Sbjct: 141 AERLLHTKKRMAELTSQHTGQTVEQVTRDSDRDRWFDAFEAKEYGLIDDVI 191


>gi|39977745|ref|XP_370260.1| hypothetical protein MGG_06757 [Magnaporthe oryzae 70-15]
 gi|145013724|gb|EDJ98365.1| hypothetical protein MGG_06757 [Magnaporthe oryzae 70-15]
          Length = 274

 Score =  192 bits (488), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 92/199 (46%), Positives = 138/199 (69%), Gaps = 7/199 (3%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P+V E T  G R+ DI+S+LL+ERIV + G I+D     + AQLL+LE ++P K I+LY
Sbjct: 49  MPLVTEVTAGGWRTSDIFSKLLQERIVCLNGPIDDWTQASVTAQLLWLEQDSPHKPITLY 108

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG V++G+AIYDTM +I  P+ T C+G AASMG++LL  G  G R+ALP+++I++H
Sbjct: 109 INSPGGQVSSGLAIYDTMNYISSPVHTVCVGMAASMGAILLLGGAAGQRYALPHSQIMVH 168

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK-------TYEEVEKTLDRDHIMS 191
           QP G   GQASDI  +A+ I +I+ ++N+I  ++            +EV++ ++RD  ++
Sbjct: 169 QPLGSTQGQASDIIIYAKQITRIRSQINDIMRRHLNTAAGRERFAAQEVDEMMERDKYLT 228

Query: 192 ASEACDWGVVDKVLMSRID 210
           A EA + G+VDK+L SR D
Sbjct: 229 ADEAVELGIVDKILTSRSD 247


>gi|283457917|ref|YP_003362519.1| protease subunit of ATP-dependent Clp protease [Rothia mucilaginosa
           DY-18]
 gi|283133934|dbj|BAI64699.1| protease subunit of ATP-dependent Clp protease [Rothia mucilaginosa
           DY-18]
          Length = 229

 Score =  192 bits (487), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 98/193 (50%), Positives = 143/193 (74%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++RI+F+  Q++D  A  I AQLL LEA++P+++I+L
Sbjct: 23  VLPSFEERTPYGYKRQDPYAKLFEDRIIFLGTQVDDASADDIMAQLLVLEAQDPERDITL 82

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQFI+P I T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 83  YINSPGGSFTAMTAIYDTMQFIRPEIQTVCLGQAASAAAVLLAAGTPGKRLALPNARVLI 142

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SG   GQASDIE HA ++++++    +    + GKTYEEV+++++RD+I++A+ A
Sbjct: 143 HQPALSGQQGGQASDIEIHANEVMRMREWTAQTLALHSGKTYEEVDRSIERDNILTAAAA 202

Query: 196 CDWGVVDKVLMSR 208
            ++G+VDKVL SR
Sbjct: 203 LEYGLVDKVLESR 215


>gi|313204335|ref|YP_004042992.1| ATP-dependent clp protease proteolytic subunit clpp [Paludibacter
           propionicigenes WB4]
 gi|312443651|gb|ADQ80007.1| ATP-dependent Clp protease proteolytic subunit ClpP [Paludibacter
           propionicigenes WB4]
          Length = 223

 Score =  192 bits (487), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 86/188 (45%), Positives = 135/188 (71%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  Q++D+ A +I AQLL+L++ +P K+IS+Y+
Sbjct: 32  PSILEERQLNVTQMDVFSRLMMDRIIFLGTQVDDYTANVIQAQLLYLDSADPGKDISIYL 91

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           N+PGG V AG+ IYDTMQFI   ++T C G AASMG++LL AG +G R AL ++R+++HQ
Sbjct: 92  NTPGGSVYAGLGIYDTMQFISSDVATICTGMAASMGAVLLVAGAQGKRSALKHSRVMIHQ 151

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I K+K+ L  I   +    ++ +EK  DRD+ M+++EA ++G
Sbjct: 152 PMGGAQGQASDIEITAREIQKLKKELYTIIADHSNNPFDRIEKDSDRDYWMTSTEALEYG 211

Query: 200 VVDKVLMS 207
           ++DKVL +
Sbjct: 212 MIDKVLFN 219


>gi|71000128|ref|XP_754781.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Aspergillus
           fumigatus Af293]
 gi|66852418|gb|EAL92743.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Aspergillus
           fumigatus Af293]
 gi|159127789|gb|EDP52904.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Aspergillus
           fumigatus A1163]
          Length = 175

 Score =  192 bits (487), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 91/159 (57%), Positives = 124/159 (77%), Gaps = 4/159 (2%)

Query: 55  MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASM 114
           M+  I AQLLFLEA+NPQK I LYINSPGG VTAG+AIYDTM +I  P+ST C+GQAASM
Sbjct: 1   MSASIVAQLLFLEADNPQKPIHLYINSPGGSVTAGLAIYDTMTYIASPVSTICVGQAASM 60

Query: 115 GSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKN-C 173
           GSLLL  G+ G R+ LP++ I++HQPSGG+ GQASDI  HA++I++++ +LN+IY ++  
Sbjct: 61  GSLLLCGGDPGKRYCLPHSSIMIHQPSGGYFGQASDIAIHAKEILRVRNQLNKIYQRHLT 120

Query: 174 GK---TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           GK   + EE+EK ++RD+ M A EA + G+VD++L  R+
Sbjct: 121 GKKVLSLEEIEKLMERDYFMGAQEALEMGIVDEILDRRV 159


>gi|302865150|ref|YP_003833787.1| endopeptidase Clp [Micromonospora aurantiaca ATCC 27029]
 gi|302568009|gb|ADL44211.1| Endopeptidase Clp [Micromonospora aurantiaca ATCC 27029]
          Length = 196

 Score =  192 bits (487), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 85/176 (48%), Positives = 130/176 (73%), Gaps = 1/176 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           ++ RLLKERI+F+  ++ D  A  ICAQ+L L AE+ +++I LYINSPGG V+AGMA+YD
Sbjct: 18  VFERLLKERIIFLGTEVTDASANQICAQILLLAAEDAERDIFLYINSPGGSVSAGMAVYD 77

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM+++K  ++T  +G A SMG  LL AG  G RFALP++RI++HQPSGG  G A+DI   
Sbjct: 78  TMRYVKNDVATLALGMAGSMGQFLLCAGAAGKRFALPHSRIMMHQPSGGMGGTAADITIQ 137

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           A++++ +KR + E+  ++ G+T EE+++  DRD   +A +A ++G+VD+VL +R+D
Sbjct: 138 AENMLHVKRTMQELIAQHSGRTLEEIQRDWDRDRWFTAEQAREYGLVDQVL-TRVD 192


>gi|315501699|ref|YP_004080586.1| endopeptidase clp [Micromonospora sp. L5]
 gi|315408318|gb|ADU06435.1| Endopeptidase Clp [Micromonospora sp. L5]
          Length = 196

 Score =  192 bits (487), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 85/176 (48%), Positives = 130/176 (73%), Gaps = 1/176 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           ++ RLLKERI+F+  ++ D  A  ICAQ+L L AE+ +++I LYINSPGG V+AGMA+YD
Sbjct: 18  VFERLLKERIIFLGTEVTDASANQICAQILLLAAEDAERDIFLYINSPGGSVSAGMAVYD 77

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM+++K  ++T  +G A SMG  LL AG  G RFALP++RI++HQPSGG  G A+DI   
Sbjct: 78  TMRYVKNDVATLALGMAGSMGQFLLCAGAAGKRFALPHSRIMMHQPSGGMGGTAADITIQ 137

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           A++++ +KR + E+  ++ G+T EE+++  DRD   +A +A ++G+VD+VL +R+D
Sbjct: 138 AENMLHVKRTMQELIAQHSGRTLEEIQRDWDRDRWFTAEQAREYGLVDQVL-TRVD 192


>gi|298252718|ref|ZP_06976512.1| predicted ATP-dependent Clp protease proteolytic subunit 1
           [Gardnerella vaginalis 5-1]
 gi|297533082|gb|EFH71966.1| predicted ATP-dependent Clp protease proteolytic subunit 1
           [Gardnerella vaginalis 5-1]
          Length = 203

 Score =  192 bits (487), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 87/186 (46%), Positives = 132/186 (70%)

Query: 22  VVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS 81
           V+EQ      +  I++RLLK+RI+++  +++D  A +ICAQ+L L AE+P+K+I LYINS
Sbjct: 10  VMEQAEASTSTDSIFNRLLKDRIIWLGSEVKDENANVICAQMLMLAAEDPKKDIWLYINS 69

Query: 82  PGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
           PGG +TAGMAIYDTMQ I+P ++T  +G AASMG  LLS+G  G R+   +AR+L+HQPS
Sbjct: 70  PGGSITAGMAIYDTMQLIEPDVATIAVGMAASMGQFLLSSGTPGKRYITSHARVLMHQPS 129

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
           GG  G A+D+  +A+ I+ +K+ L+E+  K  G T EE+ +  + DH  +A +A ++G V
Sbjct: 130 GGVGGTATDVRINAELIMDMKKTLSELTAKQTGHTVEEIYRDNEYDHWFTAQQALEYGFV 189

Query: 202 DKVLMS 207
           DK++ +
Sbjct: 190 DKIVTT 195


>gi|319947981|ref|ZP_08022158.1| ATP-dependent Clp protease proteolytic subunit [Dietzia cinnamea
           P4]
 gi|319438327|gb|EFV93270.1| ATP-dependent Clp protease proteolytic subunit [Dietzia cinnamea
           P4]
          Length = 213

 Score =  192 bits (487), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 85/171 (49%), Positives = 125/171 (73%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL+ERI+F+  Q++D +A  +CAQ+L L AE+P ++I++YINSPGG VTAGMAIYD
Sbjct: 31  VYERLLQERIIFLGSQVDDDIANRLCAQMLLLAAEDPSRDIAMYINSPGGSVTAGMAIYD 90

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQF++  ++T+ MG AASMG  LL+AG KG R+ALP+A+I++HQPS G  G A+DI   
Sbjct: 91  TMQFVECDVATYGMGLAASMGQFLLAAGTKGKRYALPHAKIMMHQPSAGVGGSAADIAIQ 150

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+     KR + E+   + G+++E+V +  DRD   +A +A ++G VD V+
Sbjct: 151 AEQFAATKREMAELIAFHTGQSFEQVTEDSDRDRWFTAEQAKEYGFVDHVI 201


>gi|307328456|ref|ZP_07607631.1| Endopeptidase Clp [Streptomyces violaceusniger Tu 4113]
 gi|306885868|gb|EFN16879.1| Endopeptidase Clp [Streptomyces violaceusniger Tu 4113]
          Length = 204

 Score =  192 bits (487), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 95/189 (50%), Positives = 129/189 (68%), Gaps = 1/189 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P    +   G     +Y+RLL ERI+F+  Q++D +A  I AQLL L A+ P K+I LY
Sbjct: 5   MPSAAGEPTVGGLGDQVYNRLLGERIIFLGQQVDDDIANKITAQLLLLAAD-PDKDIYLY 63

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG ++AGMAIYDTMQ+I+  + T  MG AASMG  LLSAG  G RFALPNA IL+H
Sbjct: 64  INSPGGSISAGMAIYDTMQYIQNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIH 123

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPS G +G ASDI+ HA+ ++  K+R+ E+   + G+T E++ +  DRD   SA EA ++
Sbjct: 124 QPSAGLAGSASDIKIHAERLLHTKKRMAELTSFHTGQTVEQIVRDSDRDRWFSAQEAKEY 183

Query: 199 GVVDKVLMS 207
           G+VD V+ S
Sbjct: 184 GLVDDVMTS 192


>gi|87125532|ref|ZP_01081377.1| ATP-dependent Clp protease proteolytic subunit 3 [Synechococcus sp.
           RS9917]
 gi|86166832|gb|EAQ68094.1| ATP-dependent Clp protease proteolytic subunit 3 [Synechococcus sp.
           RS9917]
          Length = 200

 Score =  192 bits (487), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 92/177 (51%), Positives = 130/177 (73%), Gaps = 1/177 (0%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ER  DIY+RL  ERI+F+  ++ D +A  + AQ+L+L++++  K I LYINSPGG VTAG
Sbjct: 18  ERWVDIYTRLGVERILFLGQEVNDGIANSLVAQMLYLDSDDSSKPIYLYINSPGGSVTAG 77

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG-QA 148
           +AIYDTMQ++K  + T C+G AASMG+ LL+AG KG R ALP++RI++HQP GG +  QA
Sbjct: 78  LAIYDTMQYVKSDVVTICVGLAASMGAFLLAAGTKGKRLALPHSRIMIHQPLGGTAQRQA 137

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           SDIE  A +I++IK  LN       GK++E +EK  DRD+ +SA EA D+G++D+V+
Sbjct: 138 SDIEIEANEILRIKEMLNRSMAAMTGKSFETIEKDTDRDYFLSAEEAKDYGLIDRVI 194


>gi|300741666|ref|ZP_07071687.1| Clp protease [Rothia dentocariosa M567]
 gi|300380851|gb|EFJ77413.1| Clp protease [Rothia dentocariosa M567]
          Length = 223

 Score =  192 bits (487), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 97/193 (50%), Positives = 143/193 (74%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++RI+F+  Q++D  A  + AQLL LEA++P ++I+L
Sbjct: 15  VLPSFEERTPYGYKRQDPYAKLFEDRIIFLGTQVDDSSADDVMAQLLVLEAQDPDRDITL 74

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQFI+P I T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 75  YINSPGGSFTAMTAIYDTMQFIRPEIQTVCLGQAASAAAVLLAAGTPGKRLALPNARVLI 134

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SG   GQASD+E HA ++++++    +    + GKTYEEV+++++RD+I++A+EA
Sbjct: 135 HQPALSGQQRGQASDLEIHANEVMRMREWTAQTLALHSGKTYEEVDRSIERDNILTAAEA 194

Query: 196 CDWGVVDKVLMSR 208
            ++G+VDKVL SR
Sbjct: 195 QEYGLVDKVLESR 207


>gi|309811144|ref|ZP_07704940.1| endopeptidase Clp [Dermacoccus sp. Ellin185]
 gi|308434874|gb|EFP58710.1| endopeptidase Clp [Dermacoccus sp. Ellin185]
          Length = 209

 Score =  192 bits (487), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 89/171 (52%), Positives = 122/171 (71%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IY+RLLKERI+F+   + D  A  ICAQLL L AE+P+K+I LYINSPGG VTAGMAI+D
Sbjct: 16  IYNRLLKERIIFLGSDVRDDNANAICAQLLLLAAEDPEKDIWLYINSPGGSVTAGMAIFD 75

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ++   + T  MG AASMG  LLSAG KG R+A P+ARI++HQP GG  G ASD++  
Sbjct: 76  TMQWVPNDVCTVAMGLAASMGQFLLSAGAKGKRYATPHARIMMHQPLGGIQGTASDVKTQ 135

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+ ++ IK+++ E+  ++ G+  E++    DRD   +A+EA ++G VD V 
Sbjct: 136 AEQLLHIKKQMAELIAEHTGQPVEKISADSDRDRWFTAAEAKEYGFVDHVF 186


>gi|223994545|ref|XP_002286956.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220978271|gb|EED96597.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 260

 Score =  192 bits (487), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 90/189 (47%), Positives = 130/189 (68%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P  +     G    D+ SRLLK+RI+ +   + D +A ++ AQLL+L  E+P+K+I+LYI
Sbjct: 58  PPTLPTVEGGSGQLDVISRLLKDRILLLGTDVNDEVANVLVAQLLYLANEDPEKDITLYI 117

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V+AG+AIYDTMQFI   + T C G AASMG+ LL AG  G R +LPNARI++HQ
Sbjct: 118 NSPGGSVSAGLAIYDTMQFIPCDVQTVCFGMAASMGAFLLGAGAPGKRKSLPNARIMIHQ 177

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQA+DIE  A++I+ +K  LN+   + C +  E++E+  DRD  M+  EA D+G
Sbjct: 178 PLGGAQGQAADIEIQAKEILFVKACLNKYIAEYCDQPVEKIEEDTDRDFFMTPYEAQDYG 237

Query: 200 VVDKVLMSR 208
           ++D+V+ ++
Sbjct: 238 IIDEVIKTK 246


>gi|239931287|ref|ZP_04688240.1| ATP dependent Clp protease proteolytic subunit 1 [Streptomyces
           ghanaensis ATCC 14672]
          Length = 201

 Score =  191 bits (486), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 92/171 (53%), Positives = 123/171 (71%), Gaps = 1/171 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y+RLL ERI+F+   ++D +A  I AQLL L A +P K+I LYINSPGG +TAGMAIYD
Sbjct: 18  VYNRLLNERIIFLGQPVDDDIANKITAQLLLL-ASDPDKDIYLYINSPGGSITAGMAIYD 76

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ+IK  + T  MG AASMG  LLSAG  G RFALPNA IL+HQPS G +G ASDI+ H
Sbjct: 77  TMQYIKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIH 136

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+ ++  KRR+ E+  ++ G+T E++ +  DRD    A EA ++G++D V+
Sbjct: 137 AERLLHTKRRMAELTSQHTGQTVEQITRDSDRDRWFDAFEAKEYGLIDDVI 187


>gi|257068141|ref|YP_003154396.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Brachybacterium faecium DSM 4810]
 gi|256558959|gb|ACU84806.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Brachybacterium faecium DSM 4810]
          Length = 210

 Score =  191 bits (486), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 87/171 (50%), Positives = 121/171 (70%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL+ERIV++  ++ D  A  IC++LL L AE+P K+I LYINSPGG +TAGMAIYD
Sbjct: 26  VYQRLLRERIVWLGSEVRDENANAICSKLLLLAAEDPDKDIYLYINSPGGSITAGMAIYD 85

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQF+KP + T  MG AASMG  LLS+G KG R+A P+ R+L+HQP GG  G A+DI+  
Sbjct: 86  TMQFVKPDVVTVGMGMAASMGQFLLSSGTKGKRYATPHTRVLMHQPLGGLGGTATDIKIQ 145

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A  I+ +KR L E+  +   K+ E++    DRD   +A+EA ++G +DK++
Sbjct: 146 ADLILSMKRTLAELIAEQTDKSVEQITADSDRDKWFTATEALEYGFIDKIV 196


>gi|116072309|ref|ZP_01469576.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           BL107]
 gi|116064831|gb|EAU70590.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           BL107]
          Length = 184

 Score =  191 bits (486), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 91/177 (51%), Positives = 132/177 (74%), Gaps = 1/177 (0%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ER  DIY+RL  ERI+F+  ++ D +A  + AQ+L+L++E+  K I LYINSPGG VTAG
Sbjct: 2   ERWVDIYTRLGVERILFLGSEVNDGIANSLVAQMLYLDSEDSSKPIYLYINSPGGSVTAG 61

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS-GQA 148
           +AI+DT+Q++K  + T C+G AASMG+ LL+AG KG R ALP++RI++HQP GG S  QA
Sbjct: 62  LAIFDTIQYVKSEVVTICVGLAASMGAFLLAAGTKGKRVALPHSRIMIHQPLGGTSRRQA 121

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           SDIE  A++I+++K  LN       G+T+E++EK  DRD+ +SA EA D+G++D+V+
Sbjct: 122 SDIEIEAREILRMKDMLNHSLADMSGQTFEKIEKDTDRDYFLSAQEAMDYGLIDRVI 178


>gi|326330783|ref|ZP_08197084.1| Clp protease [Nocardioidaceae bacterium Broad-1]
 gi|325951313|gb|EGD43352.1| Clp protease [Nocardioidaceae bacterium Broad-1]
          Length = 222

 Score =  191 bits (486), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 93/174 (53%), Positives = 125/174 (71%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           +IY+RLL+ERIVF+  ++ D  A  ICAQLL L AE+P+ +I L+INSPGG V AGMAIY
Sbjct: 34  NIYNRLLRERIVFLGSEVRDQNANAICAQLLLLSAEDPEADIFLHINSPGGSVDAGMAIY 93

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           DTM +I   ++T  MG AASMG  LL AG KG R+ALP+ARI++HQPS G  G ASDI+ 
Sbjct: 94  DTMNYIPNDVATVGMGLAASMGQFLLCAGAKGKRYALPHARIMMHQPSSGMGGSASDIKI 153

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
            AQ  + IK+ L E+  ++ G++ E+V    DRD   +A+EA D+G+VD+V+ S
Sbjct: 154 QAQQSLHIKKVLLELISEHTGQSVEQVTVDADRDRWFTAAEALDYGLVDQVIKS 207


>gi|254431764|ref|ZP_05045467.1| Clp protease [Cyanobium sp. PCC 7001]
 gi|197626217|gb|EDY38776.1| Clp protease [Cyanobium sp. PCC 7001]
          Length = 200

 Score =  191 bits (486), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 92/177 (51%), Positives = 130/177 (73%), Gaps = 1/177 (0%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ER  DIY+RL  ERI+F+  ++ D +A  + AQ+L+L++E+  K I LYINSPGG VTAG
Sbjct: 18  ERWVDIYTRLGVERILFMGSEVNDAVANALVAQMLYLDSEDSSKPIYLYINSPGGSVTAG 77

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG-QA 148
           +AIYDTMQ++K  + T C+G AASMG+ LL AG KG R ALP++RI++HQP GG S  QA
Sbjct: 78  LAIYDTMQYVKSDVVTICVGLAASMGAFLLGAGTKGKRLALPHSRIMIHQPLGGTSQRQA 137

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           SDI   A++I++IK  LN       G+ +E++EK  DRD+ +SA+EA D+G++D+V+
Sbjct: 138 SDIAIEAKEILRIKDMLNHSMADMTGQPFEKIEKDTDRDYFLSAAEAKDYGLIDRVI 194


>gi|212550900|ref|YP_002309217.1| ATP-dependent Clp protease protease subunit [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
 gi|212549138|dbj|BAG83806.1| ATP-dependent Clp protease protease subunit [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
          Length = 222

 Score =  191 bits (485), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 89/189 (47%), Positives = 134/189 (70%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  +I+D+ A+++ AQLL+L++  P K+IS+YI
Sbjct: 33  PTIIEERQLNVAQMDVFSRLMMDRIIFLGTRIDDYSASVVQAQLLYLDSAEPGKDISIYI 92

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V AG  IYDTMQFI   ++T C G AASM ++LL AG KG R AL ++R+++HQ
Sbjct: 93  NSPGGTVYAGYGIYDTMQFISSDVTTICTGMAASMAAVLLVAGTKGKRSALCHSRVMIHQ 152

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I+KIK+ +  I  ++ G++YE+V K  DRD  M+A EA  +G
Sbjct: 153 PLGGAQGQASDIEITAREILKIKKEIYTIIAEHSGQSYEQVLKDGDRDFWMNAEEALAYG 212

Query: 200 VVDKVLMSR 208
           ++D +L  +
Sbjct: 213 MIDGILTKK 221


>gi|113952713|ref|YP_729943.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           CC9311]
 gi|113880064|gb|ABI45022.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP
           [Synechococcus sp. CC9311]
          Length = 200

 Score =  191 bits (485), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 91/177 (51%), Positives = 132/177 (74%), Gaps = 1/177 (0%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ER  DIY+RL  ERI+F+   + D +A  + AQ+L+L++E+  K I LYINSPGG VTAG
Sbjct: 18  ERWVDIYTRLGVERILFLGQDVNDGVANSLVAQMLYLDSEDSSKPIYLYINSPGGSVTAG 77

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG-QA 148
           +AIYDTMQ++K  + T C+G AASMG+ LL+AG KG R ALP++RI++HQP GG +  QA
Sbjct: 78  LAIYDTMQYVKSDVVTICVGLAASMGAFLLTAGTKGKRLALPHSRIMIHQPLGGTAQRQA 137

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           SDIE  A++I+++K  LN       G+++E++EK  DRD+ +SA+EA D+G++D+V+
Sbjct: 138 SDIEIEAREILRMKEMLNRSMADMTGQSFEKIEKDTDRDYFLSAAEAKDYGLIDRVI 194


>gi|297243349|ref|ZP_06927282.1| predicted ATP-dependent Clp protease proteolytic subunit 1
           [Gardnerella vaginalis AMD]
 gi|296888596|gb|EFH27335.1| predicted ATP-dependent Clp protease proteolytic subunit 1
           [Gardnerella vaginalis AMD]
          Length = 203

 Score =  191 bits (485), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 87/186 (46%), Positives = 132/186 (70%)

Query: 22  VVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS 81
           V+EQ      +  I++RLLK+RI+++  +++D  A +ICAQ+L L AE+P+K+I LYINS
Sbjct: 10  VMEQAEAPTSTDSIFNRLLKDRIIWLGSEVKDENANVICAQMLMLAAEDPKKDIWLYINS 69

Query: 82  PGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
           PGG +TAGMAIYDTMQ I+P ++T  +G AASMG  LLS+G  G R+   +AR+L+HQPS
Sbjct: 70  PGGSITAGMAIYDTMQLIEPDVATIAVGMAASMGQFLLSSGTPGKRYITSHARVLMHQPS 129

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
           GG  G A+D+  +A+ I+ +K+ L+E+  K  G T EE+ +  + DH  +A +A ++G V
Sbjct: 130 GGVGGTATDVRINAELIMDMKKTLSELTAKQTGHTVEEIYRDNEYDHWFTAQQALEYGFV 189

Query: 202 DKVLMS 207
           DK++ +
Sbjct: 190 DKIVTT 195


>gi|291439660|ref|ZP_06579050.1| ATP-dependent Clp protease proteolytic subunit 1 [Streptomyces
           ghanaensis ATCC 14672]
 gi|291342555|gb|EFE69511.1| ATP-dependent Clp protease proteolytic subunit 1 [Streptomyces
           ghanaensis ATCC 14672]
          Length = 219

 Score =  191 bits (485), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 92/171 (53%), Positives = 123/171 (71%), Gaps = 1/171 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y+RLL ERI+F+   ++D +A  I AQLL L A +P K+I LYINSPGG +TAGMAIYD
Sbjct: 36  VYNRLLNERIIFLGQPVDDDIANKITAQLLLL-ASDPDKDIYLYINSPGGSITAGMAIYD 94

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ+IK  + T  MG AASMG  LLSAG  G RFALPNA IL+HQPS G +G ASDI+ H
Sbjct: 95  TMQYIKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIH 154

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+ ++  KRR+ E+  ++ G+T E++ +  DRD    A EA ++G++D V+
Sbjct: 155 AERLLHTKRRMAELTSQHTGQTVEQITRDSDRDRWFDAFEAKEYGLIDDVI 205


>gi|119492479|ref|XP_001263605.1| Clp protease, putative [Neosartorya fischeri NRRL 181]
 gi|119411765|gb|EAW21708.1| Clp protease, putative [Neosartorya fischeri NRRL 181]
          Length = 175

 Score =  191 bits (485), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 91/159 (57%), Positives = 123/159 (77%), Gaps = 4/159 (2%)

Query: 55  MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASM 114
           M+  I AQLLFLEA+NPQK I LYINSPGG VTAG+AIYDTM +I  P+ST C+GQAASM
Sbjct: 1   MSASIVAQLLFLEADNPQKPIHLYINSPGGSVTAGLAIYDTMTYIASPVSTICVGQAASM 60

Query: 115 GSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKN-C 173
           GSLLL  G  G R+ LP++ I++HQPSGG+ GQASDI  HA++I++++ +LN+IY ++  
Sbjct: 61  GSLLLCGGNPGKRYCLPHSSIMIHQPSGGYFGQASDIAIHAKEILRVRSQLNKIYQRHLT 120

Query: 174 GK---TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           GK   + EE+EK ++RD+ M A EA + G+VD++L  R+
Sbjct: 121 GKKVLSLEEIEKLMERDYFMGAQEALEMGIVDEILDRRV 159


>gi|297622838|ref|YP_003704272.1| endopeptidase Clp [Truepera radiovictrix DSM 17093]
 gi|297164018|gb|ADI13729.1| Endopeptidase Clp [Truepera radiovictrix DSM 17093]
          Length = 209

 Score =  191 bits (485), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 89/194 (45%), Positives = 140/194 (72%), Gaps = 1/194 (0%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT RGER YD+YSRLLKERI+F+   I+  +A ++ AQLL L++++ ++EI
Sbjct: 1   MPLVPYVIEQTGRGERMYDVYSRLLKERIIFLGTPIDSEVANVVVAQLLLLDSQSSEQEI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +L+IN PGG V AG+AIYDTMQFI  P++T C+G A SMGS++L AG +G R ALPN+R+
Sbjct: 61  NLFINCPGGEVYAGLAIYDTMQFISAPVATTCVGIAMSMGSIILMAGAEGKRAALPNSRV 120

Query: 136 LLHQPSGGFSGQA-SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           ++HQ S GF   +  D+E  A++ + ++  +  +Y ++ G+  E++ + ++RD  MS  +
Sbjct: 121 MIHQGSAGFPRSSLPDLEVQAREFMFVRDTILGLYERHTGQEREKILRDMERDFFMSPEQ 180

Query: 195 ACDWGVVDKVLMSR 208
           A  +G++D+V+  R
Sbjct: 181 AKAYGLIDRVIEPR 194


>gi|33240837|ref|NP_875779.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
 gi|67460521|sp|Q7VAR9|CLPP2_PROMA RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|33238366|gb|AAQ00432.1| Protease subunit of ATP-dependent Clp protease [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
          Length = 200

 Score =  191 bits (485), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 93/177 (52%), Positives = 131/177 (74%), Gaps = 1/177 (0%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ER  DIY+RL  ERI+F+  ++ D +A  + AQ+L+L++E+  K I LYINSPGG VTAG
Sbjct: 18  ERWVDIYTRLGAERILFLGQEVTDGVANSLVAQMLYLDSEDSTKPIYLYINSPGGSVTAG 77

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG-QA 148
           +AIYDTM+++K  + T C+G AASMG+ LLSAG K  R ALP++RI++HQP GG S  QA
Sbjct: 78  LAIYDTMKYVKSDVVTICVGLAASMGAFLLSAGTKNKRLALPHSRIMIHQPLGGTSQRQA 137

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           SDIE  A++I++IK  LN    +  G+ +E++EK  DRD+ +SA EA D+G++DKV+
Sbjct: 138 SDIEIEAKEILRIKDMLNRSMAEMTGQPFEKIEKDTDRDYFLSAKEAKDYGLIDKVI 194


>gi|226309395|ref|YP_002769355.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rhodococcus
           erythropolis PR4]
 gi|229494681|ref|ZP_04388439.1| Clp protease [Rhodococcus erythropolis SK121]
 gi|226188512|dbj|BAH36616.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rhodococcus
           erythropolis PR4]
 gi|229318348|gb|EEN84211.1| Clp protease [Rhodococcus erythropolis SK121]
          Length = 195

 Score =  191 bits (485), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 95/187 (50%), Positives = 135/187 (72%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+E+T  GERS+DI+SRLL ERIVF+  +I+D +A ++ AQ+L L+A+NP +EI LY
Sbjct: 6   IPSVIERTPTGERSFDIFSRLLNERIVFLGTEIDDGVANVVMAQMLHLQADNPDREIGLY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TA +AIYDTMQF+KP IST+CMGQAAS  ++LL+AG  G R  L ++R+LLH
Sbjct: 66  INSPGGSTTAMLAIYDTMQFLKPTISTYCMGQAASAAAVLLAAGTPGHRHVLAHSRVLLH 125

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPS   SG  SD+   A +I++I+ +   I  K+ G++ E + K  DRD I +A +A  +
Sbjct: 126 QPSTQGSGTISDLALQAAEILRIREQTEAILSKHTGQSVERLRKDTDRDRIFTADDAISY 185

Query: 199 GVVDKVL 205
           G+ D ++
Sbjct: 186 GLADTLI 192


>gi|171692433|ref|XP_001911141.1| hypothetical protein [Podospora anserina S mat+]
 gi|170946165|emb|CAP72966.1| unnamed protein product [Podospora anserina S mat+]
          Length = 254

 Score =  191 bits (485), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 90/198 (45%), Positives = 140/198 (70%), Gaps = 7/198 (3%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P + E T  G R+ DI+S+LL+ERIV + G I+D ++  I AQLL+LE++NP K I++Y
Sbjct: 41  MPYITEVTAGGWRTSDIFSKLLQERIVCLNGAIDDTVSASIVAQLLWLESDNPDKPITMY 100

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG V++G+AIYDTM +IK P+ST C+G AASM ++LL  GE G R+ALP++ I++H
Sbjct: 101 INSPGGEVSSGLAIYDTMTYIKSPVSTVCVGGAASMAAILLIGGEPGKRYALPHSSIMVH 160

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTY-------EEVEKTLDRDHIMS 191
           QP GG  GQASDI  +A  I +++ ++N+I   +  K++       + +   ++RD  ++
Sbjct: 161 QPLGGTRGQASDILIYANQIQRLRDQINKIVQSHINKSFGFEKYDMQAINDMMERDKYLT 220

Query: 192 ASEACDWGVVDKVLMSRI 209
           A EA D+G++D++L  R+
Sbjct: 221 AEEAKDFGIIDEILHRRV 238


>gi|311113766|ref|YP_003984988.1| ATP-dependent Clp protease proteolytic subunit [Rothia dentocariosa
           ATCC 17931]
 gi|310945260|gb|ADP41554.1| ATP-dependent Clp protease proteolytic subunit [Rothia dentocariosa
           ATCC 17931]
          Length = 195

 Score =  191 bits (485), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 92/179 (51%), Positives = 122/179 (68%), Gaps = 1/179 (0%)

Query: 29  GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTA 88
           G+  Y +Y+RLLKERI+++  ++ D  A LIC+Q+L L AE+P+ +I LYINSPGG VTA
Sbjct: 8   GQEDY-VYNRLLKERIIWLGSEVRDSNANLICSQMLLLSAEDPEADIYLYINSPGGSVTA 66

Query: 89  GMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQA 148
           GMAIYDTMQ I   + T   G AASMG  LL+AG  G R+A PNARIL+HQP GG  G A
Sbjct: 67  GMAIYDTMQLIPNDVVTVVTGMAASMGQFLLTAGAMGKRYATPNARILMHQPLGGIGGTA 126

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           SDI   A+ I+ +K+RL EI  +  GK+ E + K  DRD+  +A E  ++G  D + +S
Sbjct: 127 SDIRTQAELILDMKKRLAEITAERTGKSLETILKDNDRDNWFTAEEGLEYGFFDHIALS 185


>gi|33862587|ref|NP_894147.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus str. MIT 9313]
 gi|67460518|sp|Q7V8M4|CLPP2_PROMM RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|33634503|emb|CAE20489.1| Clp protease subunit [Prochlorococcus marinus str. MIT 9313]
          Length = 200

 Score =  191 bits (485), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 91/177 (51%), Positives = 134/177 (75%), Gaps = 1/177 (0%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ER  DIY+RL  ERI+F+  ++ D +A  + AQ+L+L++E+  K I LYINSPGG VTAG
Sbjct: 18  ERWVDIYTRLGVERILFLGQEVSDGVANSLVAQMLYLDSEDSTKPIYLYINSPGGSVTAG 77

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG-QA 148
           +AIYDTM+++K  + T C+G AASMG+ LL+AG KG R ALP++RI++HQP GG +  QA
Sbjct: 78  LAIYDTMKYVKSDVVTICVGLAASMGAFLLTAGTKGKRLALPHSRIMIHQPLGGTNQRQA 137

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           SDIE  A++I++IK  LN    +  G+++E++EK  DRD+ +SA+EA D+G++D+V+
Sbjct: 138 SDIEIEAREILRIKDMLNHSMAELTGQSFEKIEKDTDRDYFLSAAEAKDYGLIDRVI 194


>gi|225010439|ref|ZP_03700910.1| Endopeptidase Clp [Flavobacteria bacterium MS024-3C]
 gi|225005268|gb|EEG43219.1| Endopeptidase Clp [Flavobacteria bacterium MS024-3C]
          Length = 226

 Score =  191 bits (484), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 88/190 (46%), Positives = 134/190 (70%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +G+ P ++E+      + D++SRL+ +RI+F+   I D +A ++ AQLLFLE+ +  K+I
Sbjct: 32  VGMTPNIIEERQLNAIAMDVFSRLMMDRIIFLGTGINDQVANIVQAQLLFLESADAAKDI 91

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG V AG+ IYDTMQFIKP ++T C G AASM ++LL AGEKG R  L ++R+
Sbjct: 92  QIYINSPGGSVYAGLGIYDTMQFIKPDVATICTGIAASMAAVLLCAGEKGKRSGLTHSRV 151

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP  G  GQASDIE  A++++KIK  L  I   + G+T+++V +  DRD+ M A +A
Sbjct: 152 MIHQPLSGAQGQASDIEIAAKEVLKIKDELYTIISNHSGQTFDKVYQDSDRDYWMKAEQA 211

Query: 196 CDWGVVDKVL 205
             +G++D++L
Sbjct: 212 KSYGMIDEIL 221


>gi|313900686|ref|ZP_07834179.1| endopeptidase Clp [Clostridium sp. HGF2]
 gi|312954748|gb|EFR36423.1| endopeptidase Clp [Clostridium sp. HGF2]
          Length = 189

 Score =  191 bits (484), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 91/188 (48%), Positives = 131/188 (69%), Gaps = 1/188 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            VP ++E+    ER YD+YS LLKERI+ +TG+I+D M++ ICAQLL+L + + +  I +
Sbjct: 3   FVPTIIERNASSERVYDLYSCLLKERIIILTGEIDDAMSSSICAQLLYLSSISSEP-IQM 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG+AIYD M++I+  +ST CMG  ASM ++LLSAG +G R AL N+ I++
Sbjct: 62  YINSPGGSVSAGLAIYDIMKYIRCDVSTICMGICASMAAVLLSAGTQGKRSALSNSEIMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA D+E  A  I K+K RL  I  +N  ++ E + +  DRD+ M A EA  
Sbjct: 122 HQPMGGMQGQAKDMEIAALHIQKLKERLYSILSENTRQSNETLRRDCDRDYYMDAKEALS 181

Query: 198 WGVVDKVL 205
           +G++D ++
Sbjct: 182 YGLIDAII 189


>gi|163753152|ref|ZP_02160276.1| ATP-dependent Clp protease proteolytic subunit 2 [Kordia algicida
           OT-1]
 gi|161326884|gb|EDP98209.1| ATP-dependent Clp protease proteolytic subunit 2 [Kordia algicida
           OT-1]
          Length = 230

 Score =  191 bits (484), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 90/209 (43%), Positives = 142/209 (67%), Gaps = 3/209 (1%)

Query: 1   MSFEGCAKKDSEDVF---LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMAT 57
           M ++    + S   F   +G+ P ++E+        D++SRL+ +RI+F+   I+D +A 
Sbjct: 20  MYYDKIVSRMSPSAFSNPVGMTPYIIEERQMNVAQMDVFSRLMMDRIIFLGTGIDDQVAN 79

Query: 58  LICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSL 117
           ++ AQLLF+E+ +  K+I +YINSPGG V AG+ IYDTMQFIKP ++T C G AASMG++
Sbjct: 80  IVQAQLLFMESVDSSKDIQIYINSPGGSVYAGLGIYDTMQFIKPDVATICTGMAASMGAV 139

Query: 118 LLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTY 177
           LL AG+ G R  L ++R+++HQP GG  GQASDIE  A++I+ +K  L +I  K+ G+ Y
Sbjct: 140 LLCAGQAGKRSGLTHSRVMIHQPLGGAQGQASDIEITAREILILKEELYKIISKHSGQPY 199

Query: 178 EEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           E++ +  DRD+ M A  A ++G++D++L+
Sbjct: 200 EKIYEDSDRDYWMKADRAKEYGMIDEILV 228


>gi|326800322|ref|YP_004318141.1| ATP-dependent Clp protease proteolytic subunit [Sphingobacterium
           sp. 21]
 gi|326551086|gb|ADZ79471.1| ATP-dependent Clp protease proteolytic subunit [Sphingobacterium
           sp. 21]
          Length = 231

 Score =  191 bits (484), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 86/195 (44%), Positives = 138/195 (70%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L P ++E+        D++SRL+ +RI+F+   + D +A +I AQLLFL++ +  ++I
Sbjct: 36  VSLTPYIIEERQLNVAQMDVFSRLMMDRIIFLGDAVTDQVANIIQAQLLFLQSADAHRDI 95

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG V AG+ IYDTMQ+I P ++T C G AASMG++LL AG KG R AL ++R+
Sbjct: 96  QIYINSPGGSVYAGLGIYDTMQYISPDVATICTGMAASMGAVLLVAGAKGKRAALKHSRV 155

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  G A+D+E + ++++K+K+ L +I   + G++Y+ VEK  DRD  M++ EA
Sbjct: 156 MIHQPSGGAQGVAADMEINLREMLKLKKELYQIIADHSGQSYDWVEKASDRDFWMTSGEA 215

Query: 196 CDWGVVDKVLMSRID 210
            + G++D+VL+ + D
Sbjct: 216 KENGMIDEVLLGKKD 230


>gi|294790933|ref|ZP_06756091.1| Clp protease [Scardovia inopinata F0304]
 gi|294458830|gb|EFG27183.1| Clp protease [Scardovia inopinata F0304]
          Length = 210

 Score =  191 bits (484), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 86/173 (49%), Positives = 127/173 (73%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I++RLLK+RI+++  +++D  A +ICAQ+L L AE+P K+I LYINSPGG +TAGMAIYD
Sbjct: 23  IFNRLLKDRIIWLGSEVKDENANVICAQMLMLAAEDPTKDIWLYINSPGGSITAGMAIYD 82

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ I+P ++T  +G AASMG  LLS+G KG RF   +AR+L+HQPSGG  G A+D+  +
Sbjct: 83  TMQLIEPDVATVAVGMAASMGQFLLSSGTKGKRFITSHARVLMHQPSGGVGGTATDVRIN 142

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+ I+ +K+ L+E+  +  G T EE+ +  + DH  +A +A D+G VDK++ +
Sbjct: 143 AELIMDMKKTLSELTAEQTGHTLEEIYRDNEYDHWFTAQQALDYGFVDKIVTT 195


>gi|302549127|ref|ZP_07301469.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           viridochromogenes DSM 40736]
 gi|302466745|gb|EFL29838.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           viridochromogenes DSM 40736]
          Length = 200

 Score =  191 bits (484), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 90/192 (46%), Positives = 134/192 (69%), Gaps = 1/192 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVE+T  GERS D++SRLL ERI+F+  +I+D +A ++ AQLL LE+  P+ EIS+Y
Sbjct: 6   IPYVVERTAHGERSSDVFSRLLSERIIFLGTEIDDGVANVVIAQLLHLESSAPESEISVY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  T+ MAIYDTM ++K PIST C+GQAAS  ++LL+ G+ G RF L +AR+LL 
Sbjct: 66  INSPGGSFTSLMAIYDTMSYVKAPISTCCVGQAASTAAVLLAGGDPGRRFVLEHARVLLG 125

Query: 139 QP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP +GG  G  SD+   A+++V+I+ ++ E+  ++       +   +DRD + +A EA  
Sbjct: 126 QPAAGGSRGAISDLALQAKEMVRIRSQVEEVLARHTHHDLATLRADMDRDKVFTAEEAVA 185

Query: 198 WGVVDKVLMSRI 209
           +G+ D+VL  R+
Sbjct: 186 YGLADEVLSRRL 197


>gi|319440931|ref|ZP_07990087.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           variabile DSM 44702]
          Length = 203

 Score =  191 bits (484), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 88/176 (50%), Positives = 125/176 (71%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           ++ RLL+ERI+F+  Q++D +A  +CAQ+L L AE+P+++ISLYINSPGG VTAGMAI+D
Sbjct: 27  VFERLLRERIIFLGTQVDDEIANKLCAQILLLSAEDPERDISLYINSPGGSVTAGMAIFD 86

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQF    ++T+ MG AASMG  LLSAG  G R+ALP+ARI++HQPS G  G ASDI   
Sbjct: 87  TMQFAPCDVATYSMGLAASMGQFLLSAGAPGKRYALPHARIMMHQPSAGVGGTASDIAIQ 146

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           A+   ++K+ +  +  ++ G++ E + K  DRD    A EA ++G+VD V+ S  D
Sbjct: 147 AEQFGEVKKEMAALIAEHTGQSVETIRKDSDRDRWFKAQEAKEYGLVDHVISSLKD 202


>gi|297199671|ref|ZP_06917068.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sviceus ATCC 29083]
 gi|197713959|gb|EDY57993.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sviceus ATCC 29083]
          Length = 219

 Score =  191 bits (484), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 91/171 (53%), Positives = 124/171 (72%), Gaps = 1/171 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y+RLL ERI+F+   ++D +A  I AQLL L A+ P+K+I LYINSPGG +TAGMAIYD
Sbjct: 36  VYNRLLGERIIFLGQAVDDDIANKITAQLLLLAAD-PEKDIYLYINSPGGSITAGMAIYD 94

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ+IK  + T  MG AASMG  LLSAG  G RFALPNA IL+HQPS G +G ASDI+ H
Sbjct: 95  TMQYIKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIH 154

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+ ++  K+R+ E+  ++ G+T E++ +  DRD    A EA ++G++D V+
Sbjct: 155 AERLLHTKKRMAELTSQHTGQTIEQITRDSDRDRWFDAHEAKEYGLIDDVI 205


>gi|283783341|ref|YP_003374095.1| Clp protease [Gardnerella vaginalis 409-05]
 gi|283441958|gb|ADB14424.1| Clp protease [Gardnerella vaginalis 409-05]
          Length = 203

 Score =  191 bits (484), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 87/186 (46%), Positives = 132/186 (70%)

Query: 22  VVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS 81
           V+EQ      +  I++RLLK+RI+++  +++D  A +ICAQ+L L AE+P+K+I LYINS
Sbjct: 10  VMEQAEAPTSTDPIFNRLLKDRIIWLGSEVKDENANVICAQMLMLAAEDPKKDIWLYINS 69

Query: 82  PGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
           PGG +TAGMAIYDTMQ I+P ++T  +G AASMG  LLS+G  G R+   +AR+L+HQPS
Sbjct: 70  PGGSITAGMAIYDTMQLIEPDVATIAVGMAASMGQFLLSSGTPGKRYITSHARVLMHQPS 129

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
           GG  G A+D+  +A+ I+ +K+ L+E+  K  G T EE+ +  + DH  +A +A ++G V
Sbjct: 130 GGVGGTATDVRINAELIMDMKKTLSELTAKQTGHTVEEIYRDNEYDHWFTAQQALEYGFV 189

Query: 202 DKVLMS 207
           DK++ +
Sbjct: 190 DKIVTT 195


>gi|257055262|ref|YP_003133094.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Saccharomonospora viridis DSM 43017]
 gi|256585134|gb|ACU96267.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Saccharomonospora viridis DSM 43017]
          Length = 197

 Score =  191 bits (484), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 93/171 (54%), Positives = 116/171 (67%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL+ERIV +  ++ D +A  I AQLL L AE+P  +I  YINSPGG VTAG AIYD
Sbjct: 17  VYERLLQERIVVLGSEVNDEVANRITAQLLLLAAEDPHSDIRFYINSPGGSVTAGFAIYD 76

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ I+P ++T+ MG AASMG  LLS+G  G R+ALP+ARIL+HQPS G  G ASDI   
Sbjct: 77  TMQLIEPDVATYAMGLAASMGQFLLSSGTPGKRYALPHARILMHQPSAGVGGTASDIAIQ 136

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+   K K  L  I  +  G+T E++ K  DRD   +ASEA D+G VD VL
Sbjct: 137 AEVFSKWKHELARITAEQTGQTVEQILKDSDRDRWFTASEAKDYGFVDHVL 187


>gi|311896032|dbj|BAJ28440.1| putative ATP-dependent Clp protease proteolytic subunit
           [Kitasatospora setae KM-6054]
          Length = 216

 Score =  191 bits (484), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 86/177 (48%), Positives = 128/177 (72%), Gaps = 1/177 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y+RLL ERI+F+  Q++D +A  I AQLL L A+ P+K+I LYINSPGG ++AGMAIYD
Sbjct: 29  VYNRLLNERIIFLGQQVDDDIANKITAQLLLLAAD-PEKDIYLYINSPGGSISAGMAIYD 87

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ+IK  + T  MG AASMG  LL+AG KG RF+LPNA IL+HQPS G  G A+DI   
Sbjct: 88  TMQYIKNDVVTIAMGMAASMGQFLLTAGAKGKRFSLPNANILMHQPSAGLGGSATDIRIQ 147

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           A+ +++ K+R++E+  ++ G++++++    DRD   +  EA  +G++D+++ S  D+
Sbjct: 148 AEQLLRTKKRMSELIAQHSGQSFDQITADSDRDRWFTPEEAKAYGLIDEIMHSAADV 204


>gi|256787753|ref|ZP_05526184.1| ATP dependent Clp protease proteolytic subunit 1 [Streptomyces
           lividans TK24]
          Length = 201

 Score =  191 bits (484), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 92/171 (53%), Positives = 123/171 (71%), Gaps = 1/171 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y+RLL ERI+F+   ++D +A  I AQLL L A +P K+I LYINSPGG +TAGMAIYD
Sbjct: 18  VYNRLLGERIIFLGQPVDDDIANKITAQLLLL-ASDPDKDIFLYINSPGGSITAGMAIYD 76

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ+IK  + T  MG AASMG  LLSAG  G RFALPNA IL+HQPS G +G ASDI+ H
Sbjct: 77  TMQYIKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIH 136

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+ ++  KRR+ E+  ++ G+T E++ +  DRD    A EA ++G++D V+
Sbjct: 137 AERLLHTKRRMAELTSQHTGQTIEQITRDSDRDRWFDAFEAKEYGLIDDVI 187


>gi|293400411|ref|ZP_06644557.1| Clp protease [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306811|gb|EFE48054.1| Clp protease [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 194

 Score =  190 bits (483), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 94/188 (50%), Positives = 129/188 (68%), Gaps = 1/188 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP ++E+    ER YD+YS LLKERI+ +TG+I+D M++ ICAQLL+L A   +  I +
Sbjct: 3   IVPTIIERNAASERVYDLYSCLLKERIIILTGEIDDAMSSSICAQLLYL-ASISKDPIQM 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG+AIYD M++I   I+T  MG  ASM ++LL AGEKG R AL NA I++
Sbjct: 62  YINSPGGSVSAGLAIYDVMKYISCEIATIGMGMCASMAAVLLCAGEKGKRSALQNAEIMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA D+E  AQ I ++K+RL  I    CG+    ++K  DRD+ M A  A  
Sbjct: 122 HQPLGGMQGQAKDMEIAAQHINQLKQRLYHILSSQCGQPIATIKKDCDRDYYMDAISAKA 181

Query: 198 WGVVDKVL 205
           +G++D V+
Sbjct: 182 YGLIDTVI 189


>gi|255071043|ref|XP_002507603.1| predicted protein [Micromonas sp. RCC299]
 gi|226522878|gb|ACO68861.1| predicted protein [Micromonas sp. RCC299]
          Length = 272

 Score =  190 bits (483), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 92/200 (46%), Positives = 138/200 (69%), Gaps = 6/200 (3%)

Query: 22  VVEQTNRG------ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +V Q ++G      ER   + S+L+ +RI+ + G ++D    LI AQLL+L+A +P+K+I
Sbjct: 63  IVAQQSKGPSPIVMERFQGVASQLMNQRIIRLGGAVDDDSCNLIVAQLLWLDATDPKKDI 122

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LY+NSPGG VTAGMA++DTM+ ++P IST C+G AASMG+ LL++G++G RF+LPN+RI
Sbjct: 123 TLYVNSPGGSVTAGMAVFDTMRHVRPDISTVCVGLAASMGAFLLASGQQGKRFSLPNSRI 182

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DIE  A +I+  K  LN    +  GK  + V +  DRD  MSA EA
Sbjct: 183 MIHQPLGGAQGQAADIEIQANEIMHHKSTLNGYLAEFTGKPLDTVMQDTDRDFFMSAFEA 242

Query: 196 CDWGVVDKVLMSRIDIEEKS 215
            ++G++D V+    D+  +S
Sbjct: 243 KEYGLIDSVIEHPTDVAVRS 262


>gi|332044507|gb|EGI80701.1| Endopeptidase Clp [Lacinutrix algicola 5H-3-7-4]
          Length = 224

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 90/188 (47%), Positives = 131/188 (69%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           + P V+E+        D++SRL+ +RI+F+   I D++A +I AQLLFL + +  K+I +
Sbjct: 34  MTPYVIEERQLNISQLDVFSRLMMDRILFLGTGINDNIANIIQAQLLFLASTDNTKDIQM 93

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+ IYDTMQFI P ++T C G AASMG++LL AGEKG R  L ++R+++
Sbjct: 94  YINSPGGSVYAGLGIYDTMQFIGPDVATICTGMAASMGAVLLCAGEKGKRSGLEHSRVMI 153

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I+ +K+ L EI  K+ G+ Y+ +    DRD+ M A  A +
Sbjct: 154 HQPLGGAQGQASDIEITAREILTLKKELYEIISKHSGQDYDTIYNDSDRDYWMKADRAKE 213

Query: 198 WGVVDKVL 205
           +G++D+VL
Sbjct: 214 YGMIDEVL 221


>gi|21221076|ref|NP_626855.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           coelicolor A3(2)]
 gi|289771640|ref|ZP_06531018.1| Clp protease [Streptomyces lividans TK24]
 gi|17373508|sp|Q9F315|CLPP1_STRCO RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|10280519|emb|CAC09995.1| ATP dependent Clp protease proteolytic subunit 1 [Streptomyces
           coelicolor A3(2)]
 gi|289701839|gb|EFD69268.1| Clp protease [Streptomyces lividans TK24]
          Length = 219

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 92/171 (53%), Positives = 123/171 (71%), Gaps = 1/171 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y+RLL ERI+F+   ++D +A  I AQLL L A +P K+I LYINSPGG +TAGMAIYD
Sbjct: 36  VYNRLLGERIIFLGQPVDDDIANKITAQLLLL-ASDPDKDIFLYINSPGGSITAGMAIYD 94

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ+IK  + T  MG AASMG  LLSAG  G RFALPNA IL+HQPS G +G ASDI+ H
Sbjct: 95  TMQYIKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIH 154

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+ ++  KRR+ E+  ++ G+T E++ +  DRD    A EA ++G++D V+
Sbjct: 155 AERLLHTKRRMAELTSQHTGQTIEQITRDSDRDRWFDAFEAKEYGLIDDVI 205


>gi|255326613|ref|ZP_05367690.1| Clp protease [Rothia mucilaginosa ATCC 25296]
 gi|255296353|gb|EET75693.1| Clp protease [Rothia mucilaginosa ATCC 25296]
          Length = 229

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 97/193 (50%), Positives = 143/193 (74%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++RI+F+  Q++D  A  I AQLL LEA++P+++I+L
Sbjct: 23  VLPSFEERTPYGYKRQDPYAKLFEDRIIFLGTQVDDASADDIMAQLLVLEAQDPERDITL 82

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQFI+P I T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 83  YINSPGGSFTAMTAIYDTMQFIRPEIQTVCLGQAASAAAVLLAAGTPGKRLALPNARVLI 142

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SG   GQASDIE HA ++++++    +    + GKTYE+V+++++RD+I++A+ A
Sbjct: 143 HQPALSGQQGGQASDIEIHANEVMRMREWTAQTLALHSGKTYEKVDRSIERDNILTAAAA 202

Query: 196 CDWGVVDKVLMSR 208
            ++G+VDKVL SR
Sbjct: 203 LEYGLVDKVLESR 215


>gi|159903903|ref|YP_001551247.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus str. MIT 9211]
 gi|159889079|gb|ABX09293.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9211]
          Length = 223

 Score =  190 bits (482), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 92/177 (51%), Positives = 132/177 (74%), Gaps = 1/177 (0%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ER  DIY+RL  ERI+F+  ++ D +A  + AQ+L+L++E+  K I LYINSPGG VTAG
Sbjct: 41  ERWVDIYTRLGAERILFLGQEVNDGVANSLVAQMLYLDSEDSTKPIYLYINSPGGSVTAG 100

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG-QA 148
           +AIYDTM+++K  + T C+G AASMG+ LLSAG K  R ALP++RI++HQP GG S  QA
Sbjct: 101 LAIYDTMKYVKSDVVTICVGLAASMGAFLLSAGTKNKRLALPHSRIMIHQPLGGTSQRQA 160

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           SDIE  A++I++IK  LN    +  G+++E++EK  DRD+ +SA EA ++G++DKV+
Sbjct: 161 SDIEIEAKEILRIKEMLNRSLAEMTGQSFEKIEKDTDRDYFLSAKEAEEYGLIDKVI 217


>gi|119717699|ref|YP_924664.1| ClpP1 peptidase. Serine peptidase. MEROPS family S14 [Nocardioides
           sp. JS614]
 gi|119538360|gb|ABL82977.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nocardioides
           sp. JS614]
          Length = 195

 Score =  190 bits (482), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 92/173 (53%), Positives = 123/173 (71%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IY RLL+ERIVF+  ++ D  A  ICAQLL L AE+P+ +I L+INSPGG V AGMAIYD
Sbjct: 8   IYQRLLRERIVFLGSEVRDQNANAICAQLLLLSAEDPEADIFLHINSPGGSVDAGMAIYD 67

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM +I   ++T  MG AASMG  LL AG KG R+ALP+ARI++HQPS G  G ASDI+  
Sbjct: 68  TMNYIPNDVATVGMGLAASMGQFLLCAGTKGKRYALPHARIMMHQPSSGMGGSASDIKIQ 127

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           AQ  + IK+ L E+  ++ G+T E++E   DRD   +A +A ++G+VD+V+ S
Sbjct: 128 AQQSLHIKKVLLELIAEHTGQTVEQIEMDADRDRWFTADQAKEYGLVDQVIKS 180


>gi|219129357|ref|XP_002184857.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217403642|gb|EEC43593.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 188

 Score =  190 bits (482), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 87/175 (49%), Positives = 128/175 (73%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+ SRLLK+RI+ +   ++D +A ++ AQLL+L  E+P+K+I+LYINSPGG V+AGMAIY
Sbjct: 2   DVISRLLKDRILLLGQGVDDEVANVLVAQLLYLANEDPEKDITLYINSPGGSVSAGMAIY 61

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           DTMQ++   +ST C G AASMG+ LL AG KG R ALPN+RI++HQP GG  GQA+DIE 
Sbjct: 62  DTMQYVPCDVSTVCFGMAASMGAFLLGAGAKGKRRALPNSRIMIHQPLGGAQGQAADIEI 121

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
            A++I+ I+  LN    + C +  +++E   DRD  M+  EA ++G++D+V+ ++
Sbjct: 122 QAKEILFIREVLNTYIAEYCDQPKDKIEADCDRDFFMTPEEAVEYGIIDEVVKTK 176


>gi|37523335|ref|NP_926712.1| ATP-dependent Clp protease proteolytic subunit [Gloeobacter
           violaceus PCC 7421]
 gi|60389714|sp|Q7NEW2|CLPP1_GLOVI RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|35214339|dbj|BAC91707.1| clpP [Gloeobacter violaceus PCC 7421]
          Length = 197

 Score =  190 bits (482), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 89/191 (46%), Positives = 137/191 (71%), Gaps = 1/191 (0%)

Query: 19  VPMVVEQTNRGERSY-DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +P V  +   G+  + DI++RL  +RI+F+  +++D +A  I A +L+L++E+P+K+I L
Sbjct: 5   IPKVPYRLPGGQSQWIDIFNRLALDRIIFLGREVDDEIANAIIASMLYLDSEDPEKDIFL 64

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG+AIYDTMQ ++  ++T C+G AASMGS LL+AG KG R +LP++RI++
Sbjct: 65  YINSPGGSVSAGLAIYDTMQHVRADVATMCVGLAASMGSFLLTAGAKGKRTSLPHSRIMI 124

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DI   A++I+  K RLN+I  +  G+  E +E+  DRD  MSA +A  
Sbjct: 125 HQPLGGAQGQATDIGIQAKEILYTKDRLNQILSERTGQPLERIERDTDRDFFMSAEDAKQ 184

Query: 198 WGVVDKVLMSR 208
           +G++D+V+  R
Sbjct: 185 YGLIDQVVQHR 195


>gi|284030228|ref|YP_003380159.1| endopeptidase Clp [Kribbella flavida DSM 17836]
 gi|283809521|gb|ADB31360.1| Endopeptidase Clp [Kribbella flavida DSM 17836]
          Length = 207

 Score =  190 bits (482), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 94/196 (47%), Positives = 123/196 (62%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P        G     IY RLL  RI+F+  ++ D  A  ICAQ+L L AE+P K+I LYI
Sbjct: 9   PTAAGGNGSGGLDDHIYQRLLSSRIIFLGSEVRDDNANAICAQMLLLNAEDPNKDIWLYI 68

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V AGMAIYDTMQ+I   ++T  MG AASMG  LL AG K  RFALP+ARI++HQ
Sbjct: 69  NSPGGSVDAGMAIYDTMQYISNDVATVGMGLAASMGQFLLCAGAKNKRFALPHARIMMHQ 128

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           PSGG  G ASDI+  AQ  + IK +L ++  ++ G+  E+VE   DRD   +A +A ++G
Sbjct: 129 PSGGMGGTASDIKIQAQQSLHIKAQLFKLIAEHTGQALEQVENDADRDRWFTADQAKEYG 188

Query: 200 VVDKVLMSRIDIEEKS 215
            +D V+ S   +   S
Sbjct: 189 FIDHVVASAAQLSSGS 204


>gi|148240100|ref|YP_001225487.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           WH 7803]
 gi|147848639|emb|CAK24190.1| Protease subunit of ATP-dependent Clp protease [Synechococcus sp.
           WH 7803]
          Length = 200

 Score =  190 bits (482), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 89/177 (50%), Positives = 132/177 (74%), Gaps = 1/177 (0%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ER  DIY+RL  ERI+F+  ++ D +A  + AQ+L+L++E+  K I LYINSPGG VTAG
Sbjct: 18  ERWVDIYTRLGVERILFLGSEVNDAVANSLVAQMLYLDSEDSGKPIYLYINSPGGSVTAG 77

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG-QA 148
           +AIYDTM+++K  + T C+G AASMG+ LL+AG +G R ALP++RI++HQP GG +  QA
Sbjct: 78  LAIYDTMKYVKSDVVTICVGLAASMGAFLLAAGTQGKRLALPHSRIMIHQPLGGTAQRQA 137

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           SDIE  AQ+I+++K  LN       G+++E++EK  DRD+ +S+ EA D+G++D+V+
Sbjct: 138 SDIEIEAQEILRMKEMLNRSMADMSGQSFEKIEKDTDRDYFLSSQEAMDYGLIDRVI 194


>gi|289644976|ref|ZP_06477015.1| Endopeptidase Clp [Frankia symbiont of Datisca glomerata]
 gi|289505212|gb|EFD26272.1| Endopeptidase Clp [Frankia symbiont of Datisca glomerata]
          Length = 210

 Score =  189 bits (481), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 95/191 (49%), Positives = 142/191 (74%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P ++E+T+RGE   D YS+LLKERI+F+  QI+D  A  I AQLL+LE E+  ++ISL
Sbjct: 10  VLPNIIERTSRGEYGMDPYSKLLKERIIFLGTQIDDVSANDIMAQLLYLEGEDADRDISL 69

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA MAIYDT+QF++P I T C+GQA S  ++LL+AG  G RFAL N+RILL
Sbjct: 70  YINSPGGSFTALMAIYDTLQFVRPDIQTLCLGQAVSGAAVLLAAGTPGKRFALSNSRILL 129

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
            QPS    GQ+SD+E HA++I++++  L  I  ++  ++ +++ + ++RD I+ A+EA +
Sbjct: 130 DQPSSQSQGQSSDLEIHAREILRMRDLLETILARHTNRSPDQIRRDVERDKILDANEAVE 189

Query: 198 WGVVDKVLMSR 208
           +G+VD+V+ SR
Sbjct: 190 YGLVDEVIQSR 200


>gi|184200754|ref|YP_001854961.1| ATP-dependent Clp protease proteolytic subunit [Kocuria rhizophila
           DC2201]
 gi|183580984|dbj|BAG29455.1| ATP-dependent Clp protease proteolytic subunit [Kocuria rhizophila
           DC2201]
          Length = 217

 Score =  189 bits (481), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 93/193 (48%), Positives = 127/193 (65%), Gaps = 1/193 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
            P + +    G+  Y +Y+RLLKERI+++  ++ D  A LIC+Q+L L AE+P+ +I LY
Sbjct: 15  TPRMEDMAPGGQDDY-VYNRLLKERIIWLGSEVRDTNANLICSQMLLLSAEDPEADIFLY 73

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAGMAIYDTMQ I   + T   G AASMG  LLS+G KG R+A PNARIL+H
Sbjct: 74  INSPGGSVTAGMAIYDTMQLIPNDVVTVATGLAASMGQFLLSSGAKGKRYATPNARILMH 133

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  G ASDI   A+ I+ +K+RL E+  +  G+T E + +  DRD+   A  A ++
Sbjct: 134 QPSGGMGGTASDIRVQAELILSMKQRLAELTAEQTGQTLETILRDNDRDNWFDAQRALEY 193

Query: 199 GVVDKVLMSRIDI 211
           G  D +  S  ++
Sbjct: 194 GFFDHIAQSASNV 206


>gi|116073334|ref|ZP_01470596.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           RS9916]
 gi|116068639|gb|EAU74391.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           RS9916]
          Length = 200

 Score =  189 bits (481), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 90/177 (50%), Positives = 131/177 (74%), Gaps = 1/177 (0%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ER  DIY+RL  ERI+F+  ++ D +A  + AQ+L+L++E+  K I LYINSPGG VTAG
Sbjct: 18  ERWVDIYTRLGVERILFLGSEVNDAVANSLVAQMLYLDSEDSSKPIYLYINSPGGSVTAG 77

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG-QA 148
           +AIYDTMQ++K  + T C+G AASMG+ LL AG KG R ALP++RI++HQP GG +  QA
Sbjct: 78  LAIYDTMQYVKSDVVTICVGLAASMGAFLLGAGTKGKRLALPHSRIMIHQPLGGTAQRQA 137

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           SDIE  A++I++IK  LN       G+++E++EK  DRD+ +SA +A ++G++D+V+
Sbjct: 138 SDIEIEAREILRIKEMLNRSMADMTGQSFEKIEKDTDRDYFLSAEDAKNYGLIDRVI 194


>gi|88809170|ref|ZP_01124679.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           WH 7805]
 gi|88787112|gb|EAR18270.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           WH 7805]
          Length = 200

 Score =  189 bits (481), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 89/177 (50%), Positives = 133/177 (75%), Gaps = 1/177 (0%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ER  DIY+RL  ERI+F+  ++ D +A  + AQ+L+L++E+  K I LYINSPGG VTAG
Sbjct: 18  ERWVDIYTRLGVERILFLGSEVNDAVANSLVAQMLYLDSEDSGKPIYLYINSPGGSVTAG 77

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG-QA 148
           +AIYDT+Q++K  + T C+G AASMG+ LL+AG KG R ALP++RI++HQP GG +  QA
Sbjct: 78  LAIYDTIQYVKSDVVTICVGLAASMGAFLLAAGTKGKRLALPHSRIMIHQPLGGTAQRQA 137

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           SDIE  A++I+++K  LN    +  G+++E++EK  DRD+ +S+ EA D+G++D+V+
Sbjct: 138 SDIEIEAREILRMKEMLNRSMAEMSGQSFEKIEKDTDRDYFLSSQEAMDYGLIDRVI 194


>gi|307102787|gb|EFN51055.1| hypothetical protein CHLNCDRAFT_141566 [Chlorella variabilis]
          Length = 258

 Score =  189 bits (481), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 90/186 (48%), Positives = 131/186 (70%), Gaps = 6/186 (3%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           PMVVE      R   + S+L  +RIV + G ++D MA LI AQLL+L++ +P ++I+LYI
Sbjct: 71  PMVVE------RFQQVISQLFSQRIVRLGGPVDDDMANLIVAQLLYLDSADPNRDITLYI 124

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VTAGMA++DTM+ I+P +ST C+G AASMG+ LL++G +G R++LPN+RI++HQ
Sbjct: 125 NSPGGSVTAGMAVFDTMRHIRPNVSTVCVGLAASMGAFLLASGHQGKRYSLPNSRIMIHQ 184

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQA+DIE  A +I+  K  LN    +  G++ + +    DRD  MSA EA ++G
Sbjct: 185 PLGGAQGQAADIEIQANEILHHKLTLNGYLAEFTGQSMDTITADTDRDFFMSAQEAVEYG 244

Query: 200 VVDKVL 205
           ++D V+
Sbjct: 245 LIDAVV 250


>gi|260591256|ref|ZP_05856714.1| Clp protease [Prevotella veroralis F0319]
 gi|260537121|gb|EEX19738.1| Clp protease [Prevotella veroralis F0319]
          Length = 237

 Score =  189 bits (481), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 89/191 (46%), Positives = 135/191 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P ++E+        D++SRL+ ERI+F+  Q++D+ A  I AQLL+L++ +P K+IS+
Sbjct: 30  LNPYILEERQLNVTQMDVFSRLMMERIIFLGTQVDDYTANTIQAQLLYLDSVDPGKDISI 89

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+ IYDTMQFI   ++T C G AASM ++LL AG++G R AL ++R+++
Sbjct: 90  YINSPGGSVTAGLGIYDTMQFISSDVATLCTGMAASMAAVLLVAGKEGKRSALKHSRVMI 149

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I+K K+ L  I   +  +++E+V    DR++ M+A EA  
Sbjct: 150 HQPLGGVQGQASDIEIEAKEIMKFKKELYTIISDHSHQSFEKVWNDSDRNYWMNAEEAKA 209

Query: 198 WGVVDKVLMSR 208
           +G++D VL+ +
Sbjct: 210 YGMIDDVLVKK 220


>gi|311113765|ref|YP_003984987.1| ATP-dependent Clp protease proteolytic subunit [Rothia dentocariosa
           ATCC 17931]
 gi|310945259|gb|ADP41553.1| ATP-dependent Clp protease proteolytic subunit [Rothia dentocariosa
           ATCC 17931]
          Length = 224

 Score =  189 bits (481), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 97/193 (50%), Positives = 142/193 (73%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++RI+F+  Q++D  A  I AQLL LEA++P ++I+L
Sbjct: 18  VLPSFEERTPYGYKRQDPYAKLFEDRIIFLGTQVDDASADDIMAQLLVLEAQDPDRDITL 77

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQFI+P I T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 78  YINSPGGSFTAMTAIYDTMQFIRPEIQTVCLGQAASAAAVLLAAGTPGKRLALPNARVLI 137

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SG   GQASD+E HA ++++++    +    + GKTYEEV+++++RD+I++A+ A
Sbjct: 138 HQPALSGQQGGQASDLEIHANEVMRMREWTAQTLALHSGKTYEEVDRSIERDNILTAAAA 197

Query: 196 CDWGVVDKVLMSR 208
            ++G+VDKVL SR
Sbjct: 198 QEYGLVDKVLDSR 210


>gi|224068558|ref|XP_002302770.1| predicted protein [Populus trichocarpa]
 gi|222844496|gb|EEE82043.1| predicted protein [Populus trichocarpa]
          Length = 300

 Score =  189 bits (481), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 91/195 (46%), Positives = 134/195 (68%), Gaps = 6/195 (3%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G  PMV       ER   + S+L + RI+   G ++D MA +I AQLL+L+A +P K+I 
Sbjct: 101 GPPPMV------HERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAVDPNKDIV 154

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+NSPGG VTAGMAI+DTM+ I+P +ST C+G AASMG+ LLSAG KG R++LPN+RI+
Sbjct: 155 MYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIM 214

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  G  SDI+  A +++  K  LN     + G++ E++ +  DRD+ MSA EA 
Sbjct: 215 IHQPLGGAQGGQSDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSAKEAK 274

Query: 197 DWGVVDKVLMSRIDI 211
           D+G++D V+++ + +
Sbjct: 275 DYGLIDGVILNPLKV 289


>gi|330040589|ref|XP_003239964.1| ATP-dependent, proteolytic subunit [Cryptomonas paramecium]
 gi|327206890|gb|AEA39066.1| ATP-dependent, proteolytic subunit [Cryptomonas paramecium]
          Length = 232

 Score =  189 bits (481), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 86/172 (50%), Positives = 129/172 (75%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           DIY+RL +ERI+F+  +I+D +A  I A +L+L++E+  K I LYINSPGG V +G+A+Y
Sbjct: 59  DIYNRLYRERIIFLGQEIDDEIANQIIAVMLYLDSESNSKPIYLYINSPGGSVISGLALY 118

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           DT+Q +K  + T  +G AASM S +L++G+KG R ALP++R+++HQP GG  GQASDIE 
Sbjct: 119 DTIQHVKSEVITVNIGLAASMASFILASGKKGKRLALPHSRVMIHQPMGGAHGQASDIEV 178

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            AQ I+KIK+ L E Y +  GK YE+V + +DRD+ MS+ EA ++G++D+++
Sbjct: 179 EAQQILKIKKTLTEDYARMTGKPYEKVLQDMDRDNFMSSHEALEYGLIDRII 230


>gi|152967460|ref|YP_001363244.1| endopeptidase Clp [Kineococcus radiotolerans SRS30216]
 gi|151361977|gb|ABS04980.1| Endopeptidase Clp [Kineococcus radiotolerans SRS30216]
          Length = 213

 Score =  189 bits (481), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 86/179 (48%), Positives = 127/179 (70%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           ++Y RLL++RI+++  ++ D MA  ICAQLL L AE+P  +I +YINSPGG V+AGM+IY
Sbjct: 28  NVYQRLLQQRIIWLGTEVRDDMANAICAQLLLLAAEDPDADIFMYINSPGGSVSAGMSIY 87

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           DTMQ+IKP ++T   G AASMG  LL AG  G R ALP+A+I++HQP GG  G ASDI+ 
Sbjct: 88  DTMQYIKPDVATIATGMAASMGQFLLCAGAAGKRSALPHAKIMMHQPLGGLGGSASDIKI 147

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
            A+ I+  K+++ E+  ++ G+T+E + +  DRD   SA EA ++G++D V+    ++E
Sbjct: 148 LAEQIIATKKQMAELIAQHSGQTFETITRDSDRDRWFSAQEAKEYGLIDHVVGHTSEVE 206


>gi|78185116|ref|YP_377551.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           CC9902]
 gi|124013823|sp|Q3AVC3|CLPP3_SYNS9 RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
           AltName: Full=Endopeptidase Clp 3
 gi|78169410|gb|ABB26507.1| ATP-dependent Clp protease proteolytic subunit ClpP [Synechococcus
           sp. CC9902]
          Length = 200

 Score =  189 bits (481), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 91/177 (51%), Positives = 131/177 (74%), Gaps = 1/177 (0%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ER  DIY+RL  ERI+F+  ++ D +A  + AQ+L+L++E+  K I LYINSPGG VTAG
Sbjct: 18  ERWVDIYTRLGVERILFLGSEVNDGIANSLVAQMLYLDSEDSSKPIYLYINSPGGSVTAG 77

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS-GQA 148
           +AIYDT+Q++K  + T C+G AASMG+ LL+AG KG R ALP++RI++HQP GG S  QA
Sbjct: 78  LAIYDTIQYVKSEVVTICVGLAASMGAFLLAAGTKGKRVALPHSRIMIHQPLGGTSRRQA 137

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           SDIE  A++I+++K  LN       G+T+E++EK  DRD+ +SA EA  +G++D+V+
Sbjct: 138 SDIEIEAREILRMKDMLNHSLADMSGQTFEKIEKDTDRDYFLSAEEAMAYGLIDRVI 194


>gi|288920827|ref|ZP_06415125.1| Endopeptidase Clp [Frankia sp. EUN1f]
 gi|288347786|gb|EFC82065.1| Endopeptidase Clp [Frankia sp. EUN1f]
          Length = 255

 Score =  189 bits (481), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 88/171 (51%), Positives = 123/171 (71%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +++RLL+ERI+F+   +ED +A  ICAQLL L AE+PQ++I LYINSPGG V+AGMAIYD
Sbjct: 72  VFNRLLRERIIFLGSVVEDSIANAICAQLLLLNAEDPQRDIFLYINSPGGSVSAGMAIYD 131

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ+++  ++T  +G AASMG  LL AG  G R++LP+ARI++HQPSGG  G ASDI   
Sbjct: 132 TMQYVENDVATVSLGLAASMGQFLLCAGAPGKRYSLPHARIMMHQPSGGIGGTASDIAIQ 191

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+ ++  KR + E    + G+  E++E+  DRD   +A EA D+G VD V+
Sbjct: 192 AEQMLYTKRMMQERIAFHTGQPVEQIERDSDRDRWFTADEAKDYGFVDHVV 242


>gi|168004996|ref|XP_001755197.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162693790|gb|EDQ80141.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 251

 Score =  189 bits (480), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 87/176 (49%), Positives = 126/176 (71%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ER   + ++L ++RI+   G ++D MA LI AQLL+L+A +P ++I +Y+NSPGG VTAG
Sbjct: 52  ERFQSVITQLFQQRIIRCGGAVDDDMANLIVAQLLYLDAADPNRDIVMYVNSPGGSVTAG 111

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
           MAI+DTM+ I+P +ST C+G AASMG+ LLS G KG R++LPN+RI++HQP GG  GQ +
Sbjct: 112 MAIFDTMRHIRPDVSTVCVGLAASMGAFLLSGGTKGKRYSLPNSRIMIHQPLGGAQGQQT 171

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           DIE  A +I+  K  LN     + G+ YE++ +  DRD  MSA EA ++G++D V+
Sbjct: 172 DIEIQANEILHHKANLNGYLAYHTGQPYEKIVQDTDRDFFMSAKEAQEYGLIDAVI 227


>gi|282860204|ref|ZP_06269278.1| Clp protease [Prevotella bivia JCVIHMP010]
 gi|282587025|gb|EFB92256.1| Clp protease [Prevotella bivia JCVIHMP010]
          Length = 221

 Score =  189 bits (480), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 90/198 (45%), Positives = 139/198 (70%), Gaps = 2/198 (1%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
           ++D +L   P ++E+        D++SRL+ +RI+F+  QI+D+ A  + AQLL+L++ +
Sbjct: 25  TQDQYLN--PYILEERQLNVTQMDVFSRLMMDRIIFLGTQIDDYTANTLQAQLLYLDSVD 82

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
             K+IS+YINSPGG VTAG+ IYDTMQFI   ++T C G AASMG++LL AG +G R AL
Sbjct: 83  SGKDISIYINSPGGSVTAGLGIYDTMQFISSDVATICTGMAASMGAVLLVAGAEGKRSAL 142

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           P++R+++HQP GG  GQASDIE  A++I K K+ L  I   +  +++E+V    DR++ M
Sbjct: 143 PHSRVMIHQPLGGVQGQASDIEIEAKEIQKFKKELYTIISNHSHQSFEKVWNDSDRNYWM 202

Query: 191 SASEACDWGVVDKVLMSR 208
           +A EA  +G++D+VL+ +
Sbjct: 203 TADEAKAYGMIDEVLIRK 220


>gi|168048812|ref|XP_001776859.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671715|gb|EDQ58262.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 265

 Score =  189 bits (480), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 87/176 (49%), Positives = 126/176 (71%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ER   + ++L ++RI+   G ++D MA LI AQLL+L+A +P ++I +Y+NSPGG VTAG
Sbjct: 66  ERFQSVITQLFQQRIIRCGGAVDDDMANLIVAQLLYLDAADPNRDIVMYVNSPGGSVTAG 125

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
           MAI+DTM+ I+P +ST C+G AASMG+ LLS G KG R++LPN+RI++HQP GG  GQ +
Sbjct: 126 MAIFDTMRHIRPDVSTVCVGLAASMGAFLLSGGTKGKRYSLPNSRIMIHQPLGGAQGQQT 185

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           DIE  A +I+  K  LN     + G+ YE++ +  DRD  MSA EA ++G++D V+
Sbjct: 186 DIEIQANEILHHKANLNGYLAYHTGQPYEKIVQDTDRDFFMSAKEAKEYGLIDAVI 241


>gi|299471219|emb|CBN79074.1| chloroplast clp protease P [Ectocarpus siliculosus]
          Length = 292

 Score =  189 bits (480), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 88/189 (46%), Positives = 131/189 (69%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P+ +   + G    D+ SRLLK+RI+ +  Q+ D +A ++ AQLL+L  ++P K+I+LYI
Sbjct: 88  PVRMPVVDVGGSQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANDDPDKDITLYI 147

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V+AGMAIYD MQ++   +ST C G AASMG+ LL AG KG R +LPNARI++HQ
Sbjct: 148 NSPGGSVSAGMAIYDAMQYVPCDVSTVCFGTAASMGAFLLGAGAKGKRRSLPNARIMIHQ 207

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQA+DIE  A++I+ I+  LN    + C +  ++++   DRD  M+  EA D+G
Sbjct: 208 PLGGAQGQAADIEIQAKEILFIRSLLNSYMAEYCDQPADKIQDDCDRDFFMTPEEAMDYG 267

Query: 200 VVDKVLMSR 208
           ++D+V+ ++
Sbjct: 268 LIDEVVTTK 276


>gi|110776269|ref|XP_001123103.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 1-like,
           partial [Apis mellifera]
          Length = 222

 Score =  189 bits (480), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 87/117 (74%), Positives = 104/117 (88%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQT+RGER++DIYSRLLKERI+F+TG + D +A+LI AQLL+LE+ NP+KEIS 
Sbjct: 106 LVPMVVEQTSRGERAFDIYSRLLKERIIFLTGPVYDQVASLISAQLLYLESVNPKKEISF 165

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           YINSPGGVV+AG+AIYDTMQ+I+ P+ST C+GQAASMGSLLL  GE   RFALPNAR
Sbjct: 166 YINSPGGVVSAGLAIYDTMQYIRCPVSTVCIGQAASMGSLLLCGGEPNNRFALPNAR 222


>gi|168018159|ref|XP_001761614.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687298|gb|EDQ73682.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 303

 Score =  189 bits (480), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 87/176 (49%), Positives = 126/176 (71%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ER   + ++L ++RI+   G ++D MA LI AQLL+L+A +P ++I +Y+NSPGG VTAG
Sbjct: 104 ERFQSVITQLFQQRIIRCGGAVDDDMANLIVAQLLYLDAADPDRDIVMYVNSPGGSVTAG 163

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
           MAI+DTM+ I+P +ST C+G AASMG+ LLS G KG R++LPN+RI++HQP GG  GQ +
Sbjct: 164 MAIFDTMRHIRPDVSTVCVGLAASMGAFLLSGGTKGKRYSLPNSRIMIHQPLGGAQGQQT 223

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           DIE  A +I+  K  LN     + G+ YE++ +  DRD  MSA EA ++G++D V+
Sbjct: 224 DIEIQANEILHHKANLNGYLAYHTGQPYEKIVQDTDRDFFMSAKEAQEYGLIDAVI 279


>gi|213966160|ref|ZP_03394346.1| Clp protease [Corynebacterium amycolatum SK46]
 gi|213951175|gb|EEB62571.1| Clp protease [Corynebacterium amycolatum SK46]
          Length = 190

 Score =  189 bits (480), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 86/176 (48%), Positives = 125/176 (71%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           ++ +LLKERI+++  Q++D +A  +C Q+L L AE+P+ +ISLYINSPGG VTAGMAIYD
Sbjct: 12  VFDKLLKERIIWLGEQVDDEIANKLCGQMLLLAAEDPESDISLYINSPGGSVTAGMAIYD 71

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQF+   ++T+ MG AASMG  LL+AG KG R+ALP+ARI++HQPS G  G ASDI   
Sbjct: 72  TMQFVPCDVATYGMGLAASMGQFLLAAGAKGKRYALPHARIMMHQPSAGIGGTASDITIQ 131

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           A+     K+ +  +  ++ G+  E +E+  DRD   +A+EA ++G+VD V+ +  D
Sbjct: 132 AEQFAATKKEMARLIAQHTGQPVERIEEDSDRDRWFTAAEAKEYGLVDHVVTALKD 187


>gi|28493447|ref|NP_787608.1| ATP-dependent Clp protease proteolytic subunit [Tropheryma whipplei
           str. Twist]
 gi|28572440|ref|NP_789220.1| ATP-dependent Clp protease proteolytic subunit [Tropheryma whipplei
           TW08/27]
 gi|67460538|sp|Q83G49|CLPP1_TROWT RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|67460539|sp|Q83I18|CLPP2_TROW8 RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|28410571|emb|CAD66958.1| ATP dependent Clp protease proteolytic subunit 2 [Tropheryma
           whipplei TW08/27]
 gi|28476488|gb|AAO44577.1| ATP-dependent Clp protease proteolytic subunit [Tropheryma whipplei
           str. Twist]
          Length = 207

 Score =  189 bits (480), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 91/194 (46%), Positives = 140/194 (72%), Gaps = 4/194 (2%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P + E+T  G +  D Y++L ++RIVF+  QI+D  A  + AQLL LE ++ +++I +
Sbjct: 8   ILPSLDERTAYGYKQVDPYTKLFEDRIVFLGVQIDDASADDVMAQLLVLEGQDAERDIIM 67

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+I+P I T C+GQAAS  +++LSAG  G R ALPNARIL+
Sbjct: 68  YINSPGGSFTAMTAIYDTMQYIRPQIQTVCLGQAASAAAVILSAGTPGKRLALPNARILI 127

Query: 138 HQP---SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           HQP   S G+ GQASDIE  A++I++++  L +   ++  K+ ++V K +DRD I+S+ +
Sbjct: 128 HQPVVASSGY-GQASDIEIQAREIMRMREWLEKTLAQHSNKSVKQVSKDIDRDKILSSEQ 186

Query: 195 ACDWGVVDKVLMSR 208
           A ++G++D++L+SR
Sbjct: 187 ALEYGLIDQILVSR 200


>gi|260436469|ref|ZP_05790439.1| Clp protease [Synechococcus sp. WH 8109]
 gi|260414343|gb|EEX07639.1| Clp protease [Synechococcus sp. WH 8109]
          Length = 200

 Score =  189 bits (479), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 90/177 (50%), Positives = 132/177 (74%), Gaps = 1/177 (0%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ER  DIY+RL  ERI+F+  ++ D +A  + AQ+L+L++E+  K I LYINSPGG VTAG
Sbjct: 18  ERWVDIYTRLGVERILFLGSEVNDGIANSLVAQMLYLDSEDSSKPIYLYINSPGGSVTAG 77

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS-GQA 148
           +AIYDT+Q++K  + T C+G AASMG+ LL+AG KG R ALP++RI++HQP GG S  QA
Sbjct: 78  LAIYDTIQYVKSEVVTICVGLAASMGAFLLAAGTKGKRVALPHSRIMIHQPLGGTSRRQA 137

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           SDIE  A++I+++K  LN       G+++E++EK  DRD+ +SA EA ++G++D+V+
Sbjct: 138 SDIEIEAREILRMKEMLNRSLADMSGQSFEKIEKDTDRDYFLSAEEAKEYGLIDRVI 194


>gi|33866183|ref|NP_897742.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           WH 8102]
 gi|67460509|sp|Q7U5Q2|CLPP3_SYNPX RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
           AltName: Full=Endopeptidase Clp 3
 gi|33639158|emb|CAE08164.1| ATP-dependent Clp protease proteolytic subunit 3 [Synechococcus sp.
           WH 8102]
          Length = 200

 Score =  189 bits (479), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 90/177 (50%), Positives = 132/177 (74%), Gaps = 1/177 (0%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ER  DIY+RL  ERI+F+  ++ D +A  + AQ+L+L++E+  K I LYINSPGG VTAG
Sbjct: 18  ERWVDIYTRLGVERILFLGSEVNDGIANSLVAQMLYLDSEDSSKPIYLYINSPGGSVTAG 77

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS-GQA 148
           +AIYDT+Q++K  + T C+G AASMG+ LL+AG KG R ALP++RI++HQP GG S  QA
Sbjct: 78  LAIYDTIQYVKSEVVTICVGLAASMGAFLLAAGTKGKRVALPHSRIMIHQPLGGTSRRQA 137

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           SDIE  A++I+++K  LN       G++++++EK  DRD+ +SA EA D+G++D+V+
Sbjct: 138 SDIEIEAREILRMKEMLNRSLSDMSGQSFDKIEKDTDRDYFLSAEEAKDYGLIDRVI 194


>gi|326382826|ref|ZP_08204516.1| ATP-dependent Clp protease proteolytic subunit [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326198416|gb|EGD55600.1| ATP-dependent Clp protease proteolytic subunit [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 238

 Score =  189 bits (479), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 87/173 (50%), Positives = 121/173 (69%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           ++ RLL+ERI+F+  Q++D +A  +CAQ+L L AE+P K+I+LYINSPGG VTAGMAI+D
Sbjct: 61  VFERLLRERIIFLGTQVDDDIANRLCAQILLLAAEDPTKDINLYINSPGGSVTAGMAIFD 120

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ     ++T+ MG AASMG  LL+AG KG R ALP+ARI++HQPS G  G A+DI   
Sbjct: 121 TMQLAPCDVATYAMGMAASMGQFLLAAGAKGKRHALPHARIMMHQPSAGIGGTAADIAIQ 180

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+     KR +N +  +  G+  E++E   DRD+  +A EA ++G VD V+ S
Sbjct: 181 AEQFAATKREMNRLNAEFTGQPLEKIEADADRDNWFTAEEAKEYGFVDHVVTS 233


>gi|302560650|ref|ZP_07312992.1| Clp protease [Streptomyces griseoflavus Tu4000]
 gi|302478268|gb|EFL41361.1| Clp protease [Streptomyces griseoflavus Tu4000]
          Length = 219

 Score =  189 bits (479), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 91/171 (53%), Positives = 123/171 (71%), Gaps = 1/171 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y+RLL ERI+F+   ++D +A  I AQLL L A+ P K+I LYINSPGG +TAGMAIYD
Sbjct: 36  VYNRLLGERIIFLGQPVDDDIANKITAQLLLLAAD-PDKDIYLYINSPGGSITAGMAIYD 94

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQFIK  + T  MG AASMG  LLSAG  G RFALPNA IL+HQPS G +G ASDI+ H
Sbjct: 95  TMQFIKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIH 154

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+ ++  K+R+ E+  ++ G++ E++ +  DRD    A EA ++G++D V+
Sbjct: 155 AERLLHTKKRMAELTSQHTGQSVEQITRDSDRDRWFDAFEAKEYGLIDDVI 205


>gi|312200165|ref|YP_004020226.1| endopeptidase Clp [Frankia sp. EuI1c]
 gi|311231501|gb|ADP84356.1| Endopeptidase Clp [Frankia sp. EuI1c]
          Length = 200

 Score =  189 bits (479), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 86/173 (49%), Positives = 124/173 (71%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           ++ RLL+ERI+F+   ++D +A  +CAQLL L AE+P+++I LYINSPGGVVTAGMAIYD
Sbjct: 14  VFQRLLRERIIFLGSAVDDEVANRVCAQLLLLGAEDPRRDIFLYINSPGGVVTAGMAIYD 73

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ++   ++T  +G +ASMG  LL AG  G R+ALP+ARI++HQPSGG  G ASDI   
Sbjct: 74  TMQYLDNDVATVALGLSASMGQFLLCAGTPGKRYALPHARIMMHQPSGGIGGTASDIAIQ 133

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
            +  +  KR + E    + G+T E++++  DRD   +A EA D+G++D+V+ S
Sbjct: 134 VEQTLHTKRVIQERTAFHTGQTVEQIDRDSDRDRWFTADEARDYGLIDEVVAS 186


>gi|302551410|ref|ZP_07303752.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           viridochromogenes DSM 40736]
 gi|302469028|gb|EFL32121.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           viridochromogenes DSM 40736]
          Length = 219

 Score =  189 bits (479), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 90/171 (52%), Positives = 123/171 (71%), Gaps = 1/171 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y+RLL ERI+F+   ++D +A  I AQLL L A+ P K+I +YINSPGG +TAGMAIYD
Sbjct: 36  VYNRLLNERIIFLGQPVDDDIANKITAQLLLLAAD-PDKDIYMYINSPGGSITAGMAIYD 94

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ+IK  + T  MG AASMG  LLSAG  G RFALPNA IL+HQPS G +G ASDI+ H
Sbjct: 95  TMQYIKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIH 154

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+ ++  K+R+ E+  ++ G+T E++ +  DRD    A EA ++G++D V+
Sbjct: 155 AERLLHTKKRMAELTSQHTGQTVEQITRDSDRDRWFDAFEAKEYGLIDDVI 205


>gi|77455725|gb|ABA86601.1| chloroplast clp protease P [Isochrysis galbana]
          Length = 277

 Score =  189 bits (479), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 94/202 (46%), Positives = 139/202 (68%), Gaps = 5/202 (2%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
           FL L PMV      G+   D+ SRLLK+RI+ +   ++D +A L+ AQLL+L  E+ +K+
Sbjct: 75  FLPL-PMV----GSGDDKMDVMSRLLKDRILLLGQGVDDEVANLLVAQLLYLANEDARKD 129

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I++YINSPGG V+AGMAI+DTMQ++   ++T C G AASMG+ LL AG+KG R +LPN+R
Sbjct: 130 ITMYINSPGGSVSAGMAIFDTMQYVPCDLNTVCFGTAASMGAFLLGAGQKGKRRSLPNSR 189

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQP GG  GQA+DIE  A++I+ I+  L E      G+  +++E   DRD  M+  E
Sbjct: 190 IMIHQPLGGAQGQAADIEIQAKEILFIRALLCEYIADYTGQPVDKIEDDCDRDFFMTPEE 249

Query: 195 ACDWGVVDKVLMSRIDIEEKSK 216
           A D+G++D+VL S++ I   ++
Sbjct: 250 AKDYGIIDEVLASKVRIPTVAR 271


>gi|319953653|ref|YP_004164920.1| ATP-dependent clp protease proteolytic subunit [Cellulophaga
           algicola DSM 14237]
 gi|319422313|gb|ADV49422.1| ATP-dependent Clp protease proteolytic subunit [Cellulophaga
           algicola DSM 14237]
          Length = 226

 Score =  188 bits (478), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 89/189 (47%), Positives = 131/189 (69%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           + P ++E+      + D++SRL+ +RI+F+   I D +A ++ AQLLFLE+ +  K+I +
Sbjct: 34  MTPNIIEERQLNAIAMDVFSRLMMDRIIFLGTGINDQVANIVQAQLLFLESADASKDIQI 93

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+ IYDTMQ+IKP ++T C G AASMG++LL AGEKG R  L ++R+++
Sbjct: 94  YINSPGGSVYAGLGIYDTMQYIKPDVATICTGMAASMGAVLLCAGEKGKRSGLTHSRVMI 153

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I+K+K  L EI   +     E+V    DRD+ M A EA  
Sbjct: 154 HQPMGGAQGQASDIEITAREILKLKDELYEIIALHSNHDIEKVRDDSDRDYWMKADEAKV 213

Query: 198 WGVVDKVLM 206
           +G++D++L+
Sbjct: 214 YGMIDEILV 222


>gi|160331468|ref|XP_001712441.1| clpP2 [Hemiselmis andersenii]
 gi|159765889|gb|ABW98116.1| clpP2 [Hemiselmis andersenii]
          Length = 233

 Score =  188 bits (478), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 87/172 (50%), Positives = 129/172 (75%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           DIY+RL +ERI+F+  +I+D +A  I A +L+L++E+  K I LYINSPGG V +G+A+Y
Sbjct: 57  DIYNRLYRERIIFLGQEIDDEIANQIIAVMLYLDSEDNSKPIYLYINSPGGSVISGLAMY 116

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           DT++ IK  + T  +G AASM S +L+AGEKG R ALP++RI++HQP GG  GQASDI+ 
Sbjct: 117 DTIRHIKSEVVTINVGLAASMASFILAAGEKGKRLALPHSRIMIHQPMGGAQGQASDIKV 176

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            AQ I++I++ L E Y +  G+ YE+V + +DRD+ MSA EA ++G++D+V+
Sbjct: 177 EAQQILRIRKSLTEDYAQMTGRPYEKVLQDMDRDNFMSAYEAVEYGLIDRVI 228


>gi|23465518|ref|NP_696121.1| ATP-dependent Clp protease proteolytic subunit 1 [Bifidobacterium
           longum NCC2705]
 gi|189439549|ref|YP_001954630.1| ATP-dependent Clp proteases Protease subunit [Bifidobacterium
           longum DJO10A]
 gi|227546003|ref|ZP_03976052.1| ATP-dependent Clp protease proteolytic subunit 1 [Bifidobacterium
           longum subsp. infantis ATCC 55813]
 gi|239621941|ref|ZP_04664972.1| ATP-dependent Clp protease proteolytic subunit 2 [Bifidobacterium
           longum subsp. infantis CCUG 52486]
 gi|296453940|ref|YP_003661083.1| endopeptidase Clp [Bifidobacterium longum subsp. longum JDM301]
 gi|312132958|ref|YP_004000297.1| clpp2 [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482289|ref|ZP_07941310.1| Clp protease [Bifidobacterium sp. 12_1_47BFAA]
 gi|322688890|ref|YP_004208624.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           longum subsp. infantis 157F]
 gi|322690865|ref|YP_004220435.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           longum subsp. longum JCM 1217]
 gi|67460558|sp|Q8G5Q9|CLPP2_BIFLO RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|23326178|gb|AAN24757.1| ATP-dependent Clp protease proteolytic subunit 1 [Bifidobacterium
           longum NCC2705]
 gi|189427984|gb|ACD98132.1| ATP-dependent Clp proteases Protease subunit [Bifidobacterium
           longum DJO10A]
 gi|227213637|gb|EEI81486.1| ATP-dependent Clp protease proteolytic subunit 1 [Bifidobacterium
           longum subsp. infantis ATCC 55813]
 gi|239515132|gb|EEQ54999.1| ATP-dependent Clp protease proteolytic subunit 2 [Bifidobacterium
           longum subsp. infantis CCUG 52486]
 gi|296183371|gb|ADH00253.1| Endopeptidase Clp [Bifidobacterium longum subsp. longum JDM301]
 gi|311773940|gb|ADQ03428.1| ClpP2 [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916305|gb|EFV37706.1| Clp protease [Bifidobacterium sp. 12_1_47BFAA]
 gi|320455721|dbj|BAJ66343.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           longum subsp. longum JCM 1217]
 gi|320460226|dbj|BAJ70846.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           longum subsp. infantis 157F]
          Length = 207

 Score =  188 bits (478), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 86/173 (49%), Positives = 127/173 (73%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I++RLLK+RI+++  +++D MA  ICAQLL L AE+P+K+I LYINSPGG +TAGMAIYD
Sbjct: 24  IFNRLLKDRIIWMGEEVKDDMANRICAQLLMLAAEDPKKDIWLYINSPGGSITAGMAIYD 83

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ I+P ++T  +G  ASMG  LLS+G KG R+   +AR+L+HQPSGG  G A+D+  +
Sbjct: 84  TMQLIEPDVATVGLGMCASMGQFLLSSGTKGKRYLTSHARVLMHQPSGGIGGTATDVRIN 143

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+ I+ +K+ ++E+  +  G T EE+ +  + DH  +A EA D+G VDK++ +
Sbjct: 144 AELIMDMKKTMSELTAEQTGHTLEEIYRDNEYDHWFTAQEALDYGFVDKLVTT 196


>gi|146299462|ref|YP_001194053.1| endopeptidase Clp [Flavobacterium johnsoniae UW101]
 gi|146153880|gb|ABQ04734.1| Endopeptidase Clp [Flavobacterium johnsoniae UW101]
          Length = 224

 Score =  188 bits (478), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 86/188 (45%), Positives = 135/188 (71%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P ++E+        D++SRL+ +RI+F+   I+D +A ++ AQLLFLE+ +  K+I +
Sbjct: 34  LTPNIIEERQLNVSILDVFSRLMMDRIIFLGTGIDDQIANVVQAQLLFLESADASKDIQI 93

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG V AG+ IYDTMQ+IKP ++T C G AASMG++LL AG  G R ALP++R+++
Sbjct: 94  YLNSPGGSVYAGLGIYDTMQYIKPDVATICTGMAASMGAVLLCAGAAGKRSALPHSRVMI 153

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  G A+D+E + ++++K+K  L  I  ++ G+++E V K  +RD+ M A EA +
Sbjct: 154 HQPSGGAQGVATDMEINLREMLKLKDELYHIISQHSGQSFERVHKDSERDYWMIADEAKE 213

Query: 198 WGVVDKVL 205
           +G++D+VL
Sbjct: 214 YGMIDEVL 221


>gi|163841993|ref|YP_001626398.1| ATP-dependent endopeptidase Clp proteolytic subunit [Renibacterium
           salmoninarum ATCC 33209]
 gi|162955469|gb|ABY24984.1| ClpP [Renibacterium salmoninarum ATCC 33209]
          Length = 259

 Score =  188 bits (478), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 93/186 (50%), Positives = 125/186 (67%), Gaps = 1/186 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
            P +   +  G+  Y +Y+RLLK+R +++  ++ D  A LIC+QLL L +E+  KEI LY
Sbjct: 59  APQMATVSPGGQDDY-VYNRLLKQRTIWLGSEVRDDNANLICSQLLLLASEDQDKEIYLY 117

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAGMAIYDTMQFI   + T   G AASMG  LLS+G KG R+A PNARIL+H
Sbjct: 118 INSPGGSVTAGMAIYDTMQFIPNDVVTVATGLAASMGQFLLSSGAKGKRYATPNARILMH 177

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  G ASDI+  A+ I+ +K+ + E+  +  G+T E++ K  DRD   +A EA  +
Sbjct: 178 QPSGGIGGTASDIKIQAELILHMKKVMAELTAEQTGQTVEQILKDNDRDKWFTAEEALAY 237

Query: 199 GVVDKV 204
           G  DK+
Sbjct: 238 GFFDKI 243


>gi|63079328|gb|AAY29671.1| predicted ATP-dependent Clp protease proteolytic subunit 1
           [Bifidobacterium breve UCC2003]
          Length = 207

 Score =  188 bits (478), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 86/173 (49%), Positives = 127/173 (73%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I++RLLK+RI+++  +++D MA  ICAQLL L AE+P+K+I LYINSPGG +TAGMAIYD
Sbjct: 24  IFNRLLKDRIIWMGEEVKDDMANRICAQLLMLAAEDPKKDIWLYINSPGGSITAGMAIYD 83

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ I+P ++T  +G  ASMG  LLS+G KG R+   +AR+L+HQPSGG  G A+D+  +
Sbjct: 84  TMQLIEPDVATVGLGMCASMGQFLLSSGTKGKRYLTSHARVLMHQPSGGIGGTATDVRIN 143

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+ I+ +K+ ++E+  +  G T EE+ +  + DH  +A EA D+G VDK++ +
Sbjct: 144 AELIMDMKKTMSELTAEQTGHTVEEIYRDNEYDHWFTAQEALDYGFVDKLVTT 196


>gi|291456561|ref|ZP_06595951.1| Clp protease [Bifidobacterium breve DSM 20213]
 gi|291381838|gb|EFE89356.1| Clp protease [Bifidobacterium breve DSM 20213]
          Length = 197

 Score =  188 bits (478), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 86/173 (49%), Positives = 127/173 (73%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I++RLLK+RI+++  +++D MA  ICAQLL L AE+P+K+I LYINSPGG +TAGMAIYD
Sbjct: 14  IFNRLLKDRIIWMGEEVKDDMANRICAQLLMLAAEDPKKDIWLYINSPGGSITAGMAIYD 73

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ I+P ++T  +G  ASMG  LLS+G KG R+   +AR+L+HQPSGG  G A+D+  +
Sbjct: 74  TMQLIEPDVATVGLGMCASMGQFLLSSGTKGKRYLTSHARVLMHQPSGGIGGTATDVRIN 133

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+ I+ +K+ ++E+  +  G T EE+ +  + DH  +A EA D+G VDK++ +
Sbjct: 134 AELIMDMKKTMSELTAEQTGHTVEEIYRDNEYDHWFTAQEALDYGFVDKLVTT 186


>gi|78212384|ref|YP_381163.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           CC9605]
 gi|124013824|sp|Q3ALC4|CLPP3_SYNSC RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
           AltName: Full=Endopeptidase Clp 3
 gi|78196843|gb|ABB34608.1| Endopeptidase Clp [Synechococcus sp. CC9605]
          Length = 200

 Score =  188 bits (478), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 90/177 (50%), Positives = 132/177 (74%), Gaps = 1/177 (0%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ER  DIY+RL  ERI+F+  ++ D +A  + AQ+L+L++E+  K I LYINSPGG VTAG
Sbjct: 18  ERWVDIYTRLGVERILFLGSEVNDGIANSLVAQMLYLDSEDSSKPIYLYINSPGGSVTAG 77

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS-GQA 148
           +AIYDT+Q++K  + T C+G AASMG+ LL+AG KG R ALP++RI++HQP GG S  QA
Sbjct: 78  LAIYDTIQYVKSEVVTICVGLAASMGAFLLAAGTKGKRVALPHSRIMIHQPLGGTSRRQA 137

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           SDIE  A++I+++K  LN       G+++E++EK  DRD+ +SA EA ++G++D+V+
Sbjct: 138 SDIEIEAREILRMKEMLNRSLSDMSGQSFEKIEKDTDRDYFLSAEEAKEYGLIDRVI 194


>gi|46190463|ref|ZP_00206474.1| COG0740: Protease subunit of ATP-dependent Clp proteases
           [Bifidobacterium longum DJO10A]
 gi|291517065|emb|CBK70681.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Bifidobacterium longum subsp. longum F8]
          Length = 197

 Score =  188 bits (478), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 86/173 (49%), Positives = 127/173 (73%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I++RLLK+RI+++  +++D MA  ICAQLL L AE+P+K+I LYINSPGG +TAGMAIYD
Sbjct: 14  IFNRLLKDRIIWMGEEVKDDMANRICAQLLMLAAEDPKKDIWLYINSPGGSITAGMAIYD 73

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ I+P ++T  +G  ASMG  LLS+G KG R+   +AR+L+HQPSGG  G A+D+  +
Sbjct: 74  TMQLIEPDVATVGLGMCASMGQFLLSSGTKGKRYLTSHARVLMHQPSGGIGGTATDVRIN 133

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+ I+ +K+ ++E+  +  G T EE+ +  + DH  +A EA D+G VDK++ +
Sbjct: 134 AELIMDMKKTMSELTAEQTGHTLEEIYRDNEYDHWFTAQEALDYGFVDKLVTT 186


>gi|255548433|ref|XP_002515273.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis]
 gi|223545753|gb|EEF47257.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis]
          Length = 305

 Score =  188 bits (478), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 91/193 (47%), Positives = 132/193 (68%), Gaps = 6/193 (3%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G  PMV       ER   + S+L + RI+   G ++D MA +I AQLL+L+A +P K+I 
Sbjct: 106 GPPPMV------HERFQSVISQLFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPNKDIV 159

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+NSPGG VTAGMAI+DTM+ I+P +ST C+G AASMG+ LLSAG KG R++LPN+RI+
Sbjct: 160 MYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIM 219

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  G  SDI+  A +++  K  LN     + G++ E++ +  DRD+ MSA EA 
Sbjct: 220 IHQPLGGAQGGQSDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSAKEAT 279

Query: 197 DWGVVDKVLMSRI 209
           D+G++D V+ + +
Sbjct: 280 DYGLIDGVITNPL 292


>gi|159900345|ref|YP_001546592.1| endopeptidase Clp [Herpetosiphon aurantiacus ATCC 23779]
 gi|159893384|gb|ABX06464.1| Endopeptidase Clp [Herpetosiphon aurantiacus ATCC 23779]
          Length = 218

 Score =  188 bits (478), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 83/187 (44%), Positives = 132/187 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP VVE ++RGER YDIYSRLLKERI+ +   I+  +A ++ AQLLFL+ ++P ++IS+
Sbjct: 22  VVPYVVETSSRGERVYDIYSRLLKERIIILGTPIDSQIANVLVAQLLFLQHDDPDRDISI 81

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+AIYDTMQ + P I+T+C+G A SM + +L+ G KG R++LPN+ I +
Sbjct: 82  YINSPGGEVNAGLAIYDTMQMVSPDIATWCVGFAGSMATPVLAGGTKGKRYSLPNSTIHM 141

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           H   GG  G A D+E   +++++++  +  +  K+ G+  E + +  DRD  M+  +A +
Sbjct: 142 HPAGGGARGYAPDVEIQIKELLRLQNIVRGLLAKDTGQPIERIARDFDRDLFMTPEQAKE 201

Query: 198 WGVVDKV 204
           +G++D++
Sbjct: 202 YGIIDEI 208


>gi|297197434|ref|ZP_06914831.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sviceus ATCC 29083]
 gi|197716282|gb|EDY60316.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sviceus ATCC 29083]
          Length = 200

 Score =  188 bits (478), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 87/192 (45%), Positives = 134/192 (69%), Gaps = 1/192 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVE+T  GERS D++SRLL ERI+F+  +I+D +A ++ AQLL LE+  P+ EIS+Y
Sbjct: 6   IPYVVERTAHGERSSDVFSRLLSERIIFLGTEIDDGVANVVIAQLLHLESAAPENEISIY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  T+ MAIYDTM +++ PIST C+GQAAS  ++LL+ G+ G R  L +AR+LL 
Sbjct: 66  INSPGGSFTSLMAIYDTMTYVQAPISTLCVGQAASTAAVLLAGGDPGRRLVLEHARVLLG 125

Query: 139 QP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP +GG  G  SD+   A+++V+I+ ++ E+  ++       +   +DRD + +A EA +
Sbjct: 126 QPAAGGSRGAISDLALQAKEMVRIRSQVEEVLARHTHHDIATLRADMDRDKVFTAEEAVE 185

Query: 198 WGVVDKVLMSRI 209
           +G+ D+V+  R+
Sbjct: 186 YGLADEVVSRRL 197


>gi|170516915|gb|ACB15394.1| ClpP1 [Bifidobacterium longum]
          Length = 200

 Score =  188 bits (477), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 86/173 (49%), Positives = 127/173 (73%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I++RLLK+RI+++  +++D MA  ICAQLL L AE+P+K+I LYINSPGG +TAGMAIYD
Sbjct: 17  IFNRLLKDRIIWMGEEVKDDMANRICAQLLMLAAEDPKKDIWLYINSPGGSITAGMAIYD 76

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ I+P ++T  +G  ASMG  LLS+G KG R+   +AR+L+HQPSGG  G A+D+  +
Sbjct: 77  TMQLIEPDVATVGLGMCASMGQFLLSSGTKGKRYLTSHARVLMHQPSGGIGGTATDVRIN 136

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+ I+ +K+ ++E+  +  G T EE+ +  + DH  +A EA D+G VDK++ +
Sbjct: 137 AELIMDMKKTMSELTAEQTGHTLEEIYRDNEYDHWFTAQEALDYGFVDKLVTT 189


>gi|153809070|ref|ZP_01961738.1| hypothetical protein BACCAC_03378 [Bacteroides caccae ATCC 43185]
 gi|149128403|gb|EDM19622.1| hypothetical protein BACCAC_03378 [Bacteroides caccae ATCC 43185]
          Length = 220

 Score =  188 bits (477), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 87/191 (45%), Positives = 135/191 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P ++E+        D++SRL+ +RI+F+  Q++D+ A  + AQLL+L++ +P K+IS+
Sbjct: 30  LNPYILEERQLNVTQLDVFSRLMMDRIIFLGTQVDDYTANTLQAQLLYLDSVDPGKDISI 89

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+ IYDTMQFI   ++T C G AASM ++LL AG++G R ALP++R+++
Sbjct: 90  YINSPGGSVYAGLGIYDTMQFISSDVATICTGMAASMAAVLLVAGKEGKRSALPHSRVMI 149

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I K+K+ L  I   +    +++V    DRD+ M+A EA +
Sbjct: 150 HQPMGGAQGQASDIEITAREIQKLKKELYTIIADHSHTDFDKVWADSDRDYWMTAQEAKE 209

Query: 198 WGVVDKVLMSR 208
           +G++D+VL+ +
Sbjct: 210 YGMIDEVLIKK 220


>gi|222624791|gb|EEE58923.1| hypothetical protein OsJ_10573 [Oryza sativa Japonica Group]
          Length = 282

 Score =  188 bits (477), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 91/193 (47%), Positives = 133/193 (68%), Gaps = 6/193 (3%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G  PMV+E      R   + S+L + RI+   G +ED MA +I AQLL+L+A +P K+I 
Sbjct: 86  GPSPMVME------RFQSVVSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAIDPNKDII 139

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+NSPGG VTAGMAI+DTM+ I+P +ST C+G AASMG+ LLSAG KG R++LPN+RI+
Sbjct: 140 MYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCIGLAASMGAFLLSAGTKGKRYSLPNSRIM 199

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQ +D+E  A +++  K  LN     + G+  +++    DRD+ MSA EA 
Sbjct: 200 IHQPLGGAQGQETDLEIQANEMLHHKANLNGYLAYHTGQPLDKINVDTDRDYFMSAKEAK 259

Query: 197 DWGVVDKVLMSRI 209
           ++G++D V+M+ +
Sbjct: 260 EYGLIDGVIMNPL 272


>gi|297600816|ref|NP_001049902.2| Os03g0308100 [Oryza sativa Japonica Group]
 gi|63003513|dbj|BAD98161.1| ATP-dependent protease [Oryza sativa Japonica Group]
 gi|108707751|gb|ABF95546.1| ATP-dependent Clp protease proteolytic subunit 1, putative,
           expressed [Oryza sativa Japonica Group]
 gi|215740983|dbj|BAG97478.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215765780|dbj|BAG87477.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255674452|dbj|BAF11816.2| Os03g0308100 [Oryza sativa Japonica Group]
          Length = 282

 Score =  188 bits (477), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 91/193 (47%), Positives = 133/193 (68%), Gaps = 6/193 (3%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G  PMV+E      R   + S+L + RI+   G +ED MA +I AQLL+L+A +P K+I 
Sbjct: 86  GPSPMVME------RFQSVVSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAIDPNKDII 139

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+NSPGG VTAGMAI+DTM+ I+P +ST C+G AASMG+ LLSAG KG R++LPN+RI+
Sbjct: 140 MYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCIGLAASMGAFLLSAGTKGKRYSLPNSRIM 199

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQ +D+E  A +++  K  LN     + G+  +++    DRD+ MSA EA 
Sbjct: 200 IHQPLGGAQGQETDLEIQANEMLHHKANLNGYLAYHTGQPLDKINVDTDRDYFMSAKEAK 259

Query: 197 DWGVVDKVLMSRI 209
           ++G++D V+M+ +
Sbjct: 260 EYGLIDGVIMNPL 272


>gi|302345891|ref|YP_003814244.1| Clp protease [Prevotella melaninogenica ATCC 25845]
 gi|302149660|gb|ADK95922.1| Clp protease [Prevotella melaninogenica ATCC 25845]
          Length = 230

 Score =  188 bits (477), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 88/191 (46%), Positives = 136/191 (71%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P ++E+        D++SRL+ ERI+F+  Q++D+ A  I AQLL+L++ +P K+IS+
Sbjct: 30  LNPYILEERQLNVTQMDVFSRLMMERIIFLGTQVDDYSANTIQAQLLYLDSVDPGKDISI 89

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+ IYDTMQFI   ++T C G AASM ++LL AG++G R AL ++R+++
Sbjct: 90  YINSPGGSVTAGLGIYDTMQFISSDVATLCTGMAASMAAVLLVAGKEGKRSALKHSRVMI 149

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I K K+ L  I  ++  + +++V    DR++ M++ EA +
Sbjct: 150 HQPLGGVQGQASDIEIEAREIQKFKKELYNIISEHSHQPFDKVWNDSDRNYWMTSEEAKE 209

Query: 198 WGVVDKVLMSR 208
           +G++D+VLM +
Sbjct: 210 YGMIDEVLMRK 220


>gi|195640846|gb|ACG39891.1| ATP-dependent Clp protease proteolytic subunit 1 [Zea mays]
          Length = 281

 Score =  188 bits (477), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 91/193 (47%), Positives = 133/193 (68%), Gaps = 6/193 (3%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G  PMV+E      R   + S+L + RI+   G +ED MA +I AQLL+L+A +P K+I 
Sbjct: 85  GPSPMVME------RFQSVVSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAIDPNKDII 138

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+NSPGG VTAGMAI+DTM+ I+P +ST C+G AASMG+ LLSAG KG R++LPN+RI+
Sbjct: 139 MYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCIGLAASMGAFLLSAGTKGKRYSLPNSRIM 198

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQ +D+E  A +++  K  LN     + G+  +++    DRD+ MSA EA 
Sbjct: 199 IHQPLGGAQGQETDLEIQANEMLHHKANLNGYLAYHTGQPLDKINVDTDRDYFMSAKEAK 258

Query: 197 DWGVVDKVLMSRI 209
           ++G++D V+M+ +
Sbjct: 259 EYGLIDGVIMNPL 271


>gi|330996067|ref|ZP_08319961.1| endopeptidase Clp [Paraprevotella xylaniphila YIT 11841]
 gi|329574064|gb|EGG55642.1| endopeptidase Clp [Paraprevotella xylaniphila YIT 11841]
          Length = 231

 Score =  188 bits (477), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 88/191 (46%), Positives = 134/191 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P ++E+        D++SRL+ +RI+F+  QI+D+ A  + AQLL+L++ +P K+IS+
Sbjct: 30  LNPYILEERQLNVTQMDVFSRLMMDRIIFLGTQIDDYTANTLQAQLLYLDSVDPGKDISI 89

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+ IYDTMQFI  P++T C G AASM ++LL AG +G R AL ++R+++
Sbjct: 90  YINSPGGSVYAGLGIYDTMQFISSPVATICTGMAASMAAVLLVAGAEGKRSALTHSRVMI 149

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I K+K+ L  I  ++    +++V    DRD+ M+A EA +
Sbjct: 150 HQPMGGAQGQASDIEITAREIQKLKKELYTIIAEHSHTDFDKVWADSDRDYWMTAQEAKE 209

Query: 198 WGVVDKVLMSR 208
           +G++D VL+ +
Sbjct: 210 YGMIDSVLIRK 220


>gi|312195810|ref|YP_004015871.1| endopeptidase Clp [Frankia sp. EuI1c]
 gi|311227146|gb|ADP80001.1| Endopeptidase Clp [Frankia sp. EuI1c]
          Length = 215

 Score =  188 bits (477), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 88/171 (51%), Positives = 122/171 (71%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y+RLL+ERI+F+   +ED +A  ICAQLL L AE+P ++I LYINSPGG V+AGMAIYD
Sbjct: 31  VYNRLLRERIIFLGTVVEDSIANAICAQLLLLNAEDPNRDIWLYINSPGGSVSAGMAIYD 90

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQF++  ++T  +G AASMG  LL AG  G R++LP+ARI++HQPSGG  G ASDI   
Sbjct: 91  TMQFVENDVATVSLGLAASMGQFLLCAGAAGKRYSLPHARIMMHQPSGGIGGTASDIAIQ 150

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+ ++  KR + E    + G+  +++E+  DRD   +A EA D+G VD V+
Sbjct: 151 AEQMLYTKRMMQERIAFHTGQPIDQIERDSDRDRWFTAEEAKDYGFVDHVV 201


>gi|255038319|ref|YP_003088940.1| Endopeptidase Clp [Dyadobacter fermentans DSM 18053]
 gi|254951075|gb|ACT95775.1| Endopeptidase Clp [Dyadobacter fermentans DSM 18053]
          Length = 224

 Score =  188 bits (477), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 86/184 (46%), Positives = 132/184 (71%)

Query: 22  VVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS 81
           V+E+     R  D++SRL+ +RI+F+   ++D++A +I AQLLFLE+ +P+K+I +YINS
Sbjct: 37  VIEERPMNFREVDVFSRLMADRIIFMGTGVDDNIANIIVAQLLFLESADPKKDILMYINS 96

Query: 82  PGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
           PGG V AG+ IYDTMQ+++P ++T C   AASMG++LL+ G  G R ALP+AR+++HQPS
Sbjct: 97  PGGSVYAGLGIYDTMQYVRPDVATVCTSLAASMGAVLLAGGAAGKRSALPHARVMIHQPS 156

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
           GG  G + DIE   ++IVK++  L EI   + G+T E++    DRD  + A EA ++G++
Sbjct: 157 GGAQGTSVDIEITTREIVKLRHELYEILAHHTGQTPEQIALDSDRDKWLKALEAKEYGLI 216

Query: 202 DKVL 205
           D+VL
Sbjct: 217 DEVL 220


>gi|320102926|ref|YP_004178517.1| ATP-dependent Clp protease proteolytic subunit ClpP [Isosphaera
           pallida ATCC 43644]
 gi|319750208|gb|ADV61968.1| ATP-dependent Clp protease proteolytic subunit ClpP [Isosphaera
           pallida ATCC 43644]
          Length = 209

 Score =  188 bits (477), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 85/196 (43%), Positives = 139/196 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP+V+E+  R ER+ DIYSRLL++RI+ ++  ++D  A LI AQLL L  ++ + EISL
Sbjct: 3   MVPIVIERGGREERAMDIYSRLLQDRIIMLSSILDDVTANLIVAQLLVLAHQDAKAEISL 62

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG +T  MA+YDTMQFI  P++T+C+G AAS  ++LL+ G KG R ALP+++I+L
Sbjct: 63  YLNSPGGSLTGTMAVYDTMQFIGCPVATYCIGMAASGAAILLAGGTKGRRHALPHSKIML 122

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP G   GQ SDI   A ++++ K  + ++  +  G++ +++E  + RD  +SA EA +
Sbjct: 123 HQPYGHVGGQVSDISIQAAEVLRNKAVVEKVLARRTGRSEKQIESEIKRDRYLSAPEALE 182

Query: 198 WGVVDKVLMSRIDIEE 213
           +G++D ++  + +I++
Sbjct: 183 FGLIDHIVEDKSEIKD 198


>gi|288803882|ref|ZP_06409307.1| Clp protease [Prevotella melaninogenica D18]
 gi|288333647|gb|EFC72097.1| Clp protease [Prevotella melaninogenica D18]
          Length = 230

 Score =  188 bits (477), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 88/191 (46%), Positives = 136/191 (71%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P ++E+        D++SRL+ ERI+F+  Q++D+ A  I AQLL+L++ +P K+IS+
Sbjct: 30  LNPYILEERQLNVTQMDVFSRLMMERIIFLGTQVDDYSANTIQAQLLYLDSVDPGKDISI 89

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+ IYDTMQFI   ++T C G AASM ++LL AG++G R AL ++R+++
Sbjct: 90  YINSPGGSVTAGLGIYDTMQFISSDVATLCTGMAASMAAVLLVAGKEGKRSALKHSRVMI 149

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I K K+ L  I  ++  + +++V    DR++ M++ EA +
Sbjct: 150 HQPLGGVQGQASDIEIEAREIQKFKKELYTIISEHSHQPFDKVWNDSDRNYWMTSEEAKE 209

Query: 198 WGVVDKVLMSR 208
           +G++D+VLM +
Sbjct: 210 YGMIDEVLMRK 220


>gi|223973663|gb|ACN31019.1| unknown [Zea mays]
          Length = 280

 Score =  188 bits (477), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 91/193 (47%), Positives = 133/193 (68%), Gaps = 6/193 (3%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G  PMV+E      R   + S+L + RI+   G +ED MA +I AQLL+L+A +P K+I 
Sbjct: 84  GPSPMVME------RFQSVVSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAIDPTKDII 137

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+NSPGG VTAGMAI+DTM+ I+P +ST C+G AASMG+ LLSAG KG R++LPN+RI+
Sbjct: 138 MYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCIGLAASMGAFLLSAGTKGKRYSLPNSRIM 197

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQ +D+E  A +++  K  LN     + G+  +++    DRD+ MSA EA 
Sbjct: 198 IHQPLGGAQGQETDLEIQANEMLHHKANLNGYLAYHTGQPLDKINVDTDRDYFMSAKEAK 257

Query: 197 DWGVVDKVLMSRI 209
           ++G++D V+M+ +
Sbjct: 258 EYGLIDGVIMNPL 270


>gi|224283329|ref|ZP_03646651.1| ATP-dependent Clp protease proteolytic subunit 2 [Bifidobacterium
           bifidum NCIMB 41171]
 gi|310287699|ref|YP_003938957.1| ATP-dependent Clp protease proteolytic subunit 1 [Bifidobacterium
           bifidum S17]
 gi|311064597|ref|YP_003971322.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           bifidum PRL2010]
 gi|313140481|ref|ZP_07802674.1| ATP-dependent Clp protease proteolytic subunit 2 [Bifidobacterium
           bifidum NCIMB 41171]
 gi|309251635|gb|ADO53383.1| ATP-dependent Clp protease proteolytic subunit 1 [Bifidobacterium
           bifidum S17]
 gi|310866916|gb|ADP36285.1| Clp ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           bifidum PRL2010]
 gi|313132991|gb|EFR50608.1| ATP-dependent Clp protease proteolytic subunit 2 [Bifidobacterium
           bifidum NCIMB 41171]
          Length = 203

 Score =  187 bits (476), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 84/174 (48%), Positives = 127/174 (72%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I++RLLK+RI+++  +++D MA  ICAQ+L L AE+P+K+I LYINSPGG +TAGMAIYD
Sbjct: 23  IFNRLLKDRIIWMGEEVKDDMANRICAQMLMLAAEDPKKDIWLYINSPGGSITAGMAIYD 82

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ I+P ++T  +G  ASMG  LLS+G KG RF   +AR+L+HQPSGG  G  +D+  +
Sbjct: 83  TMQLIQPDVATVGLGMCASMGQFLLSSGTKGKRFLTSHARVLMHQPSGGIGGTTTDVRIN 142

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           A+ I+ +K+ ++E+  +  G T EE+ +  + DH  +A+EA ++G VDK++ + 
Sbjct: 143 AELIMDMKKTMSELTAEQTGHTVEEIYRDNEYDHWFTATEALEYGFVDKIITTH 196


>gi|242035957|ref|XP_002465373.1| hypothetical protein SORBIDRAFT_01g037430 [Sorghum bicolor]
 gi|241919227|gb|EER92371.1| hypothetical protein SORBIDRAFT_01g037430 [Sorghum bicolor]
          Length = 283

 Score =  187 bits (476), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 91/193 (47%), Positives = 133/193 (68%), Gaps = 6/193 (3%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G  PMV+E      R   + S+L + RI+   G +ED MA +I AQLL+L+A +P K+I 
Sbjct: 87  GPSPMVME------RFQSVVSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAIDPTKDII 140

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+NSPGG VTAGMAI+DTM+ I+P +ST C+G AASMG+ LLSAG KG R++LPN+RI+
Sbjct: 141 MYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCIGLAASMGAFLLSAGTKGKRYSLPNSRIM 200

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQ +D+E  A +++  K  LN     + G+  +++    DRD+ MSA EA 
Sbjct: 201 IHQPLGGAQGQETDLEIQANEMLHHKANLNGYLAYHTGQPLDKINVDTDRDYFMSAKEAK 260

Query: 197 DWGVVDKVLMSRI 209
           ++G++D V+M+ +
Sbjct: 261 EYGLIDGVIMNPL 273


>gi|86131298|ref|ZP_01049897.1| Clp protease [Dokdonia donghaensis MED134]
 gi|85818709|gb|EAQ39869.1| Clp protease [Dokdonia donghaensis MED134]
          Length = 182

 Score =  187 bits (476), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 90/170 (52%), Positives = 122/170 (71%), Gaps = 1/170 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I ++LL +R +F+ G ++D  A  +  +LL+L+A+    EI L+INSPGG VT+G A+YD
Sbjct: 11  IDNQLLNDRKIFLWGMVDDKSAKHVIDRLLYLDAQG-HDEIQLFINSPGGYVTSGFAMYD 69

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           T++ IK P+ST C G AASMGSLLLS GEKG RF  P+AR+++HQPSGG  GQASDIE  
Sbjct: 70  TIKMIKSPVSTICTGLAASMGSLLLSVGEKGRRFIQPHARVMIHQPSGGARGQASDIEIT 129

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           AQ+IVK K    +I   NCG+T++++ K   RDH M A E+ D+G+VD V
Sbjct: 130 AQEIVKTKELSAQILADNCGQTFDKIMKDFQRDHWMGADESVDYGIVDGV 179


>gi|29349250|ref|NP_812753.1| ATP-dependent Clp protease proteolytic subunit [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|160882386|ref|ZP_02063389.1| hypothetical protein BACOVA_00335 [Bacteroides ovatus ATCC 8483]
 gi|237712737|ref|ZP_04543218.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacteroides sp.
           D1]
 gi|237719059|ref|ZP_04549540.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacteroides sp.
           2_2_4]
 gi|253573097|ref|ZP_04850488.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|255690574|ref|ZP_05414249.1| Clp protease [Bacteroides finegoldii DSM 17565]
 gi|260172007|ref|ZP_05758419.1| ATP-dependent Clp protease proteolytic subunit [Bacteroides sp. D2]
 gi|262408126|ref|ZP_06084673.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacteroides
           sp. 2_1_22]
 gi|293369498|ref|ZP_06616077.1| Clp protease [Bacteroides ovatus SD CMC 3f]
 gi|294645126|ref|ZP_06722851.1| Clp protease [Bacteroides ovatus SD CC 2a]
 gi|298384791|ref|ZP_06994350.1| Clp protease [Bacteroides sp. 1_1_14]
 gi|298480169|ref|ZP_06998367.1| Clp protease [Bacteroides sp. D22]
 gi|299148142|ref|ZP_07041204.1| Clp protease [Bacteroides sp. 3_1_23]
 gi|315920320|ref|ZP_07916560.1| ATP-dependent Clp protease proteolytic subunit [Bacteroides sp. D2]
 gi|67460394|sp|Q8A129|CLPP_BACTN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|29341158|gb|AAO78947.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|156112199|gb|EDO13944.1| hypothetical protein BACOVA_00335 [Bacteroides ovatus ATCC 8483]
 gi|229447214|gb|EEO53005.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacteroides sp.
           D1]
 gi|229451438|gb|EEO57229.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacteroides sp.
           2_2_4]
 gi|251837320|gb|EES65420.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|260624036|gb|EEX46907.1| Clp protease [Bacteroides finegoldii DSM 17565]
 gi|262353678|gb|EEZ02771.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacteroides
           sp. 2_1_22]
 gi|292635383|gb|EFF53896.1| Clp protease [Bacteroides ovatus SD CMC 3f]
 gi|292639550|gb|EFF57843.1| Clp protease [Bacteroides ovatus SD CC 2a]
 gi|295088060|emb|CBK69583.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bacteroides
           xylanisolvens XB1A]
 gi|298261935|gb|EFI04800.1| Clp protease [Bacteroides sp. 1_1_14]
 gi|298273450|gb|EFI15013.1| Clp protease [Bacteroides sp. D22]
 gi|298512903|gb|EFI36790.1| Clp protease [Bacteroides sp. 3_1_23]
 gi|313694195|gb|EFS31030.1| ATP-dependent Clp protease proteolytic subunit [Bacteroides sp. D2]
          Length = 220

 Score =  187 bits (476), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 87/191 (45%), Positives = 134/191 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P ++E+        D++SRL+ +RI+F+  Q++D+ A  + AQLL+L++ +P K+IS+
Sbjct: 30  LNPYILEERQLNVTQLDVFSRLMMDRIIFLGTQVDDYTANTLQAQLLYLDSVDPGKDISI 89

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+ IYDTMQFI   ++T C G AASM ++LL AG +G R ALP++R+++
Sbjct: 90  YINSPGGSVYAGLGIYDTMQFISSDVATICTGMAASMAAVLLVAGAEGKRSALPHSRVMI 149

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I K+K+ L  I   +    +++V    DRD+ M+A EA +
Sbjct: 150 HQPMGGAQGQASDIEITAREIQKLKKELYTIIADHSHTDFDKVWADSDRDYWMTAQEAKE 209

Query: 198 WGVVDKVLMSR 208
           +G++D+VL+ +
Sbjct: 210 YGMIDEVLIKK 220


>gi|317508500|ref|ZP_07966167.1| Clp protease [Segniliparus rugosus ATCC BAA-974]
 gi|316253191|gb|EFV12594.1| Clp protease [Segniliparus rugosus ATCC BAA-974]
          Length = 200

 Score =  187 bits (476), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 84/171 (49%), Positives = 123/171 (71%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           ++ RLL+ERI+F+  +++D +A  +CAQ+L L AE+P K+ISLYINSPGG ++AGMAIYD
Sbjct: 21  VFERLLRERIIFLGSEVDDDIANRLCAQILLLTAEDPTKDISLYINSPGGSISAGMAIYD 80

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ  +  ++T+ MG AASMG  LL+AG KG RFALP+ARI++HQPS G  G A+DI   
Sbjct: 81  TMQLSECEVATYAMGMAASMGQFLLAAGAKGKRFALPHARIMMHQPSAGIYGAAADIAIQ 140

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+ +   K+ +  +  +  G+T E++ +  +RD   +A+EA D+G VD V+
Sbjct: 141 AEQLAATKKEMTRLNAEFTGQTVEKIHEDSERDRWFTAAEAKDYGFVDHVI 191


>gi|254572225|ref|XP_002493222.1| hypothetical protein [Pichia pastoris GS115]
 gi|238033020|emb|CAY71043.1| Hypothetical protein PAS_chr3_0979 [Pichia pastoris GS115]
 gi|328352764|emb|CCA39162.1| ATP-dependent Clp protease, protease subunit [Pichia pastoris CBS
           7435]
          Length = 226

 Score =  187 bits (476), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 88/176 (50%), Positives = 127/176 (72%), Gaps = 4/176 (2%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D++++LL ERI+++ G I+D  AT I AQLL+LE+++  K+I++YINSPGG VTAG+AIY
Sbjct: 42  DLFTKLLNERIIYLAGGIDDAQATSITAQLLYLESQSTSKQINIYINSPGGSVTAGLAIY 101

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS--GGFSGQASDI 151
           DT+Q+I+ P+ST C+GQA SM SLLL++G  G R  LPNA I++HQPS   G  GQA+DI
Sbjct: 102 DTIQYIRAPVSTVCLGQACSMASLLLASGTHGKRLILPNATIMVHQPSSANGIKGQATDI 161

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGK--TYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           E +A+ I+  K++L  +Y+K+     T +E+   L+RD  M   EA   G+ D+VL
Sbjct: 162 EIYARHIINTKQKLQTLYLKHMSPTMTVDEITALLERDRFMEPEEAVSLGLADRVL 217


>gi|169628671|ref|YP_001702320.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           abscessus ATCC 19977]
 gi|169240638|emb|CAM61666.1| ATP-dependent Clp protease, proteolytic subunit 2 [Mycobacterium
           abscessus]
          Length = 197

 Score =  187 bits (476), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 88/171 (51%), Positives = 122/171 (71%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL ERI+F+  Q++D +A  +CAQ+L L AE+P K+I LYINSPGG ++AGMAI+D
Sbjct: 14  VYERLLSERIIFLGQQVDDDIANKLCAQILLLTAEDPTKDIHLYINSPGGSISAGMAIFD 73

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ  +  I+T+ MG AASMG  LL+AG KG R ALP+ARIL+HQP GG +G ASDI   
Sbjct: 74  TMQLSECDIATYAMGMAASMGEFLLAAGTKGKRHALPHARILMHQPLGGVTGSASDIAIQ 133

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+    IK+ +  +  +  GK+ E++E+  DRD   +A EA ++G VDK++
Sbjct: 134 AEQFQVIKKEMFRLNAEFTGKSIEQIEQDSDRDRWFTAPEALEYGFVDKII 184


>gi|294809722|ref|ZP_06768409.1| Clp protease [Bacteroides xylanisolvens SD CC 1b]
 gi|294443056|gb|EFG11836.1| Clp protease [Bacteroides xylanisolvens SD CC 1b]
          Length = 207

 Score =  187 bits (476), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 87/191 (45%), Positives = 134/191 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P ++E+        D++SRL+ +RI+F+  Q++D+ A  + AQLL+L++ +P K+IS+
Sbjct: 17  LNPYILEERQLNVTQLDVFSRLMMDRIIFLGTQVDDYTANTLQAQLLYLDSVDPGKDISI 76

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+ IYDTMQFI   ++T C G AASM ++LL AG +G R ALP++R+++
Sbjct: 77  YINSPGGSVYAGLGIYDTMQFISSDVATICTGMAASMAAVLLVAGAEGKRSALPHSRVMI 136

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I K+K+ L  I   +    +++V    DRD+ M+A EA +
Sbjct: 137 HQPMGGAQGQASDIEITAREIQKLKKELYTIIADHSHTDFDKVWADSDRDYWMTAQEAKE 196

Query: 198 WGVVDKVLMSR 208
           +G++D+VL+ +
Sbjct: 197 YGMIDEVLIKK 207


>gi|29831990|ref|NP_826624.1| ATP-dependent Clp protease proteolytic subunit 1 [Streptomyces
           avermitilis MA-4680]
 gi|67460534|sp|Q82CA6|CLPP3_STRAW RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
           AltName: Full=Endopeptidase Clp 3
 gi|29609108|dbj|BAC73159.1| putative ATP-dependent Clp protease proteolytic subunit 1
           [Streptomyces avermitilis MA-4680]
          Length = 219

 Score =  187 bits (476), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 93/188 (49%), Positives = 125/188 (66%), Gaps = 1/188 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P        G     +Y+RLL ERI+F+   ++D +A  I AQLL L A +P K+I L
Sbjct: 18  LMPTAAGDPIGGGLGDQVYNRLLGERIIFLGQAVDDDIANKITAQLLLL-ASDPDKDIYL 76

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TAGMAIYDTMQ+IK  + T  MG AASMG  LLSAG  G RFALPNA IL+
Sbjct: 77  YINSPGGSITAGMAIYDTMQYIKNDVVTIAMGMAASMGQFLLSAGTPGKRFALPNAEILI 136

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPS G +G ASDI+ HA+ ++  K+R+ E+   + G+T E+V +  DRD      EA +
Sbjct: 137 HQPSAGLAGSASDIKIHAERLLHTKKRMAELTAFHTGQTVEQVTRDSDRDRWFDPVEAKE 196

Query: 198 WGVVDKVL 205
           +G++D ++
Sbjct: 197 YGLIDDIM 204


>gi|300786519|ref|YP_003766810.1| protease subunit of ATP-dependent Clp protease [Amycolatopsis
           mediterranei U32]
 gi|299796033|gb|ADJ46408.1| protease subunit of ATP-dependent Clp protease [Amycolatopsis
           mediterranei U32]
          Length = 193

 Score =  187 bits (476), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 87/171 (50%), Positives = 117/171 (68%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y +LL++RIVF+  ++ D +A  I AQLL L A++P K+I+ YINSPGG VTAGMAIYD
Sbjct: 20  VYEQLLRDRIVFLGSEVNDDIANRIIAQLLLLAADDPAKDITFYINSPGGSVTAGMAIYD 79

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ +KP +ST+ +G  ASMG  LLS+G  G R+ LPN RI++HQPS G SG A+DI   
Sbjct: 80  TMQLVKPDVSTWGLGFVASMGQFLLSSGTPGKRYLLPNTRIVMHQPSAGISGAAADIAIQ 139

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+   K+KRR+ EI  +  G+T E +    DRD    A EA  +G VD ++
Sbjct: 140 AEVFGKMKRRIAEITARQTGQTVERITADADRDRWFDADEALTYGFVDHIV 190


>gi|158317030|ref|YP_001509538.1| endopeptidase Clp [Frankia sp. EAN1pec]
 gi|158112435|gb|ABW14632.1| Endopeptidase Clp [Frankia sp. EAN1pec]
          Length = 213

 Score =  187 bits (476), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 87/171 (50%), Positives = 123/171 (71%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +++RLL+ERI+F+   +ED +A  ICAQLL L AE+P+++I LYINSPGG V+AGMAIYD
Sbjct: 30  VFNRLLRERIIFLGSVVEDSIANAICAQLLLLNAEDPERDIFLYINSPGGSVSAGMAIYD 89

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ+++  ++T  +G AASMG  LL AG  G R++LP+ARI++HQPSGG  G ASDI   
Sbjct: 90  TMQYVENDVATVSLGLAASMGQFLLCAGAPGKRYSLPHARIMMHQPSGGIGGTASDIAIQ 149

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+ ++  KR + E    + G+  E++E+  DRD   +A EA D+G VD V+
Sbjct: 150 AEQMLYTKRMMQERIAFHTGQPVEQIERDSDRDRWFTADEAKDYGFVDHVV 200


>gi|300788577|ref|YP_003768868.1| protease subunit of ATP-dependent Clp protease [Amycolatopsis
           mediterranei U32]
 gi|299798091|gb|ADJ48466.1| protease subunit of ATP-dependent Clp protease [Amycolatopsis
           mediterranei U32]
          Length = 201

 Score =  187 bits (476), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 91/175 (52%), Positives = 118/175 (67%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           ++ RLL+ERIV +  ++ D +A  I AQLL L+A++ + +I  YINSPGG VTAG AIYD
Sbjct: 21  VFERLLQERIVVLGSEVNDEIANRITAQLLLLDADDAESDIRFYINSPGGSVTAGFAIYD 80

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ I+P ++T+ MG AASMG  LLS+G  G R+ALP+ARIL+HQPS G  G ASDI   
Sbjct: 81  TMQLIRPDVATYAMGMAASMGQFLLSSGTPGKRYALPHARILMHQPSAGVGGTASDIAIQ 140

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           A    K KR L +I     G+T E++ K  DRD   +A EA D+G VD VL + I
Sbjct: 141 ADLFNKWKRELAQITADQTGQTVEQIIKDGDRDRWFTAQEAKDYGFVDHVLTADI 195


>gi|308800514|ref|XP_003075038.1| ClpP1 Clp protease proteolytic subunit ClpP (IC) [Ostreococcus
           tauri]
 gi|119358863|emb|CAL52310.2| ClpP1 Clp protease proteolytic subunit ClpP (IC) [Ostreococcus
           tauri]
          Length = 252

 Score =  187 bits (475), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 93/201 (46%), Positives = 135/201 (67%), Gaps = 6/201 (2%)

Query: 22  VVEQTNRG------ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           VV+Q  +G      ER   + S+L+ +RIV + G ++D    LI AQLL+L+A +P K+I
Sbjct: 43  VVDQQGKGPSPIVVERFQSVASQLMSQRIVRLGGAVDDDGCNLIVAQLLWLDAADPDKDI 102

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGG VTAGMA++DTM+ I+P +ST C+G AASMG+ LL++GE G R++LPN+RI
Sbjct: 103 TLYINSPGGSVTAGMAVFDTMRHIRPNVSTVCVGLAASMGAFLLASGEAGKRYSLPNSRI 162

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DIE  A +I+  K  LN    +   K  + V +  DRD  MSA EA
Sbjct: 163 MIHQPLGGAQGQAADIEIQANEIMHHKSTLNGYLAEFTKKPLQTVMEDTDRDFFMSAQEA 222

Query: 196 CDWGVVDKVLMSRIDIEEKSK 216
            ++G++D ++    DI  ++ 
Sbjct: 223 LEYGLIDSIIEHPADIAVRAS 243


>gi|154487067|ref|ZP_02028474.1| hypothetical protein BIFADO_00905 [Bifidobacterium adolescentis
           L2-32]
 gi|154084930|gb|EDN83975.1| hypothetical protein BIFADO_00905 [Bifidobacterium adolescentis
           L2-32]
          Length = 196

 Score =  187 bits (475), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 85/171 (49%), Positives = 126/171 (73%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I++RLLK+RI+++  +++D MA  ICAQ+L L AE+P+K+I LYINSPGG +TAGMAIYD
Sbjct: 14  IFNRLLKDRIIWMGEEVKDEMANRICAQMLMLAAEDPKKDIWLYINSPGGSITAGMAIYD 73

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ I+P ++T  +G  ASMG  LLS+G KG RF   +AR+L+HQPSGG  G A+D+  +
Sbjct: 74  TMQLIEPDVATVGLGMCASMGQFLLSSGTKGKRFLTSHARVLMHQPSGGIGGTATDVRIN 133

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+ I+ +K+ ++E+  +  G T EE+ +  + DH  +A EA ++G VDK++
Sbjct: 134 AELIMDMKKTMSELTAEQTGHTVEEIYRDNEYDHWFTAQEALEYGFVDKLV 184


>gi|312885607|ref|ZP_07745243.1| Endopeptidase Clp [Mucilaginibacter paludis DSM 18603]
 gi|311301919|gb|EFQ78952.1| Endopeptidase Clp [Mucilaginibacter paludis DSM 18603]
          Length = 232

 Score =  187 bits (475), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 89/199 (44%), Positives = 134/199 (67%)

Query: 7   AKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
           ++ +S  +   + P ++E+        D++SRL+ +RI+F+   I D  A +I AQLLFL
Sbjct: 28  SRVESSRIPTSMTPYIIEERQLNVAQMDVFSRLMMDRIIFLGDAIYDTNANIIQAQLLFL 87

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           ++ + +++I +YINSPGG V AG+ IYDTMQFI   ++T C G AASMG++LL AG  G 
Sbjct: 88  QSADAKRDIQIYINSPGGSVYAGLGIYDTMQFISNDVATICTGMAASMGAVLLCAGTAGK 147

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           R ALP++R+++HQPSGG  GQ SDIE    +I K+K+ L +I   + G +YE+V    DR
Sbjct: 148 RAALPHSRVMIHQPSGGAQGQQSDIEITYHEITKLKKELYQIIADHSGASYEKVWDASDR 207

Query: 187 DHIMSASEACDWGVVDKVL 205
           D+ M A EA ++G+VD++L
Sbjct: 208 DYWMIAEEAKEFGMVDEIL 226


>gi|311900307|dbj|BAJ32715.1| putative ATP-dependent Clp protease proteolytic subunit
           [Kitasatospora setae KM-6054]
          Length = 198

 Score =  187 bits (475), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 85/192 (44%), Positives = 137/192 (71%), Gaps = 1/192 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+E+T +GERSYD++SRLL ERIVF+  +I+D +A ++ AQLL LE+ +P +EI++Y
Sbjct: 6   IPYVIERTAQGERSYDVFSRLLNERIVFLGTEIDDGVANVVIAQLLHLESASPDEEIAIY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           +NSPGG  T+ MAIYD M F++ PI+T+C+GQAAS  ++LL+ G+ G R  L ++R+LL 
Sbjct: 66  LNSPGGSFTSLMAIYDAMTFVRCPIATYCVGQAASTAAVLLAGGDPGRRSVLRHSRVLLG 125

Query: 139 QP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP SGG  G  SD+   A+++++I+ ++ E+  ++ G     +   +DR+ +  A EA  
Sbjct: 126 QPASGGRRGTVSDLSLAAKEVLRIRAQVEEVLSRHTGHPVATLRADMDREKVFGADEAVA 185

Query: 198 WGVVDKVLMSRI 209
           +G+ D+VL +R+
Sbjct: 186 YGLADRVLNNRV 197


>gi|212716950|ref|ZP_03325078.1| hypothetical protein BIFCAT_01894 [Bifidobacterium catenulatum DSM
           16992]
 gi|225352779|ref|ZP_03743802.1| hypothetical protein BIFPSEUDO_04409 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|212660235|gb|EEB20810.1| hypothetical protein BIFCAT_01894 [Bifidobacterium catenulatum DSM
           16992]
 gi|225156386|gb|EEG69955.1| hypothetical protein BIFPSEUDO_04409 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 196

 Score =  187 bits (475), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 85/171 (49%), Positives = 126/171 (73%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I++RLLK+RI+++  +++D MA  ICAQ+L L AE+P+K+I LYINSPGG +TAGMAIYD
Sbjct: 14  IFNRLLKDRIIWMGEEVKDEMANRICAQMLMLAAEDPKKDIWLYINSPGGSITAGMAIYD 73

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ I+P ++T  +G  ASMG  LLS+G KG RF   +AR+L+HQPSGG  G A+D+  +
Sbjct: 74  TMQLIEPDVATVGLGMCASMGQFLLSSGTKGKRFLTSHARVLMHQPSGGIGGTATDVRIN 133

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+ I+ +K+ ++E+  +  G T EE+ +  + DH  +A EA ++G VDK++
Sbjct: 134 AELIMDMKKTMSELTAEQTGHTVEEIYRDNEYDHWFTAQEALEYGFVDKLV 184


>gi|28493448|ref|NP_787609.1| ATP-dependent Clp protease proteolytic subunit [Tropheryma whipplei
           str. Twist]
 gi|28572439|ref|NP_789219.1| ATP-dependent Clp protease proteolytic subunit 1 [Tropheryma
           whipplei TW08/27]
 gi|67460537|sp|Q83G48|CLPP2_TROWT RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|67460540|sp|Q83I19|CLPP1_TROW8 RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|28410570|emb|CAD66957.1| ATP-dependent Clp protease proteolytic subunit 1 [Tropheryma
           whipplei TW08/27]
 gi|28476489|gb|AAO44578.1| ATP-dependent Clp protease proteolytic subunit [Tropheryma whipplei
           str. Twist]
          Length = 180

 Score =  187 bits (475), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 87/175 (49%), Positives = 124/175 (70%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           E    ++ RLL+ERIV++   I+D +A  ICA++L L A++P+++I LYINSPGG +TAG
Sbjct: 3   ETKQTVFDRLLQERIVWLGEAIDDKLANEICAKILLLNADDPKEDIFLYINSPGGSITAG 62

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
           MAIYDTMQF+   I T  +G AASMG +LL++G +  R+ +PNAR+LLHQP  GF G AS
Sbjct: 63  MAIYDTMQFVSNDIVTVGIGMAASMGQVLLTSGTQNKRYIMPNARVLLHQPLAGFGGTAS 122

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           DI+  A+ I+ +K RL++I     GKT E++ +  DRDH  +A EA ++G VD +
Sbjct: 123 DIQTQAKLILDMKYRLSQITASRTGKTVEQIMEDGDRDHWFTAEEALEYGFVDHI 177


>gi|119025605|ref|YP_909450.1| ATP-dependent Clp protease proteolytic subunit 2 [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118765189|dbj|BAF39368.1| ATP-dependent Clp protease proteolytic subunit 2 [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 206

 Score =  187 bits (475), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 85/171 (49%), Positives = 126/171 (73%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I++RLLK+RI+++  +++D MA  ICAQ+L L AE+P+K+I LYINSPGG +TAGMAIYD
Sbjct: 24  IFNRLLKDRIIWMGEEVKDEMANRICAQMLMLAAEDPKKDIWLYINSPGGSITAGMAIYD 83

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ I+P ++T  +G  ASMG  LLS+G KG RF   +AR+L+HQPSGG  G A+D+  +
Sbjct: 84  TMQLIEPDVATVGLGMCASMGQFLLSSGTKGKRFLTSHARVLMHQPSGGIGGTATDVRIN 143

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+ I+ +K+ ++E+  +  G T EE+ +  + DH  +A EA ++G VDK++
Sbjct: 144 AELIMDMKKTMSELTAEQTGHTVEEIYRDNEYDHWFTAQEALEYGFVDKLV 194


>gi|171743309|ref|ZP_02919116.1| hypothetical protein BIFDEN_02440 [Bifidobacterium dentium ATCC
           27678]
 gi|306823254|ref|ZP_07456630.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           dentium ATCC 27679]
 gi|309801909|ref|ZP_07696024.1| endopeptidase Clp [Bifidobacterium dentium JCVIHMP022]
 gi|171278923|gb|EDT46584.1| hypothetical protein BIFDEN_02440 [Bifidobacterium dentium ATCC
           27678]
 gi|304553886|gb|EFM41797.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           dentium ATCC 27679]
 gi|308221465|gb|EFO77762.1| endopeptidase Clp [Bifidobacterium dentium JCVIHMP022]
          Length = 196

 Score =  187 bits (475), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 85/171 (49%), Positives = 126/171 (73%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I++RLLK+RI+++  +++D MA  ICAQ+L L AE+P+K+I LYINSPGG +TAGMAIYD
Sbjct: 14  IFNRLLKDRIIWMGEEVKDDMANRICAQMLMLAAEDPKKDIWLYINSPGGSITAGMAIYD 73

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ I+P ++T  +G  ASMG  LLS+G KG RF   +AR+L+HQPSGG  G A+D+  +
Sbjct: 74  TMQLIEPDVATVGLGMCASMGQFLLSSGTKGKRFLTSHARVLMHQPSGGIGGTATDVRIN 133

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+ I+ +K+ ++E+  +  G T EE+ +  + DH  +A EA ++G VDK++
Sbjct: 134 AELIMDMKKTMSELTAEQTGHTVEEIYRDNEYDHWFTAQEALEYGFVDKLV 184


>gi|319935305|ref|ZP_08009743.1| ATP-dependent Clp protease proteolytic subunit [Coprobacillus sp.
           29_1]
 gi|319809713|gb|EFW06114.1| ATP-dependent Clp protease proteolytic subunit [Coprobacillus sp.
           29_1]
          Length = 194

 Score =  187 bits (474), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 86/188 (45%), Positives = 136/188 (72%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            +P V+ +    E +YDI+SRLL++RI+ + G+I D +A+ I +QLL+LE+ +   +I +
Sbjct: 3   FIPTVILKKQSKEYAYDIFSRLLEDRIIMLCGEINDEVASSIVSQLLYLESLDSSADIYM 62

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG+AIYDTM F+K  +ST  +G +ASMG+ LL+AG+KG R AL N+ I++
Sbjct: 63  YINSPGGSVSAGLAIYDTMNFVKCDVSTISIGLSASMGAFLLAAGQKGKRCALQNSEIMI 122

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG +GQASDIE   + I++ K +LN++  +   +   +++K  DRD+ M+A +A +
Sbjct: 123 HQPLGGTNGQASDIEITTKHILRQKEKLNKLLSEMTSQPLRKIKKDTDRDYFMNAYDALE 182

Query: 198 WGVVDKVL 205
           +G++D+VL
Sbjct: 183 YGLIDEVL 190


>gi|158316683|ref|YP_001509191.1| ATP-dependent Clp protease proteolytic subunit [Frankia sp.
           EAN1pec]
 gi|158112088|gb|ABW14285.1| Endopeptidase Clp [Frankia sp. EAN1pec]
          Length = 210

 Score =  187 bits (474), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 93/191 (48%), Positives = 143/191 (74%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P VVE+T RGE S D YS+LL+ERI+F+  QI+D  A  + AQLLFLE E+P ++IS+
Sbjct: 13  VLPNVVERTPRGEYSMDPYSKLLRERIIFLGTQIDDTSANDVMAQLLFLEGEDPDRDISI 72

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDT+ F++P ++T CMGQAAS  ++LL+AG  G R ALPN+RI++
Sbjct: 73  YINSPGGSLTALTAIYDTICFVRPEVATVCMGQAASAAAVLLAAGAPGKRVALPNSRIMI 132

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPS    GQ+SD+E  A+++++++  +  + V++ G+   E+ + ++RD I++A +A  
Sbjct: 133 HQPSAQGEGQSSDLEIQAREVLRLRALMERMLVEHTGRAEHEIRQDVERDTILTAEQARQ 192

Query: 198 WGVVDKVLMSR 208
           +G+VD+V+ SR
Sbjct: 193 YGIVDEVVASR 203


>gi|326800212|ref|YP_004318031.1| ATP-dependent Clp protease proteolytic subunit [Sphingobacterium
           sp. 21]
 gi|326550976|gb|ADZ79361.1| ATP-dependent Clp protease proteolytic subunit [Sphingobacterium
           sp. 21]
          Length = 225

 Score =  187 bits (474), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 85/204 (41%), Positives = 139/204 (68%)

Query: 2   SFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICA 61
           +F+   +  + +V+  + P + E+        D++SRL+ +RI+F+   ++D +A +I A
Sbjct: 17  TFDQYERWFNRNVYASMTPYITEERQLNVAQMDVFSRLMIDRIIFLGEAVDDRVANIIQA 76

Query: 62  QLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSA 121
           QLLFL++ +P K+I LYIN PGG V AG+ IYDTMQ+I P ++T C G A S G++LL A
Sbjct: 77  QLLFLQSTDPHKDIQLYINCPGGSVYAGLGIYDTMQYITPDVATICTGIALSFGAVLLCA 136

Query: 122 GEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVE 181
           G    R AL +AR+++HQPSGG  G A+D+E +A++I+K+++ L +I   + G++YE V 
Sbjct: 137 GTDKKRAALKHARVMIHQPSGGMQGTAADLEINAREILKLQKELYQIIADHSGQSYEWVH 196

Query: 182 KTLDRDHIMSASEACDWGVVDKVL 205
            + +RD+ M+A EA  +G++D+VL
Sbjct: 197 TSSNRDYWMTAEEAKGYGMIDEVL 220


>gi|213692576|ref|YP_002323162.1| Endopeptidase Clp [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213524037|gb|ACJ52784.1| Endopeptidase Clp [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|320458728|dbj|BAJ69349.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           longum subsp. infantis ATCC 15697]
          Length = 207

 Score =  187 bits (474), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 86/173 (49%), Positives = 127/173 (73%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I++RLLK+RI+++  +++D MA  ICAQLL L AE+P+K+I LYINSPGG +TAGMAIYD
Sbjct: 24  IFNRLLKDRIIWMGEEVKDDMANRICAQLLMLAAEDPKKDIWLYINSPGGSITAGMAIYD 83

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ I+P ++T  +G  ASMG  LLS+G KG R+   +AR+L+HQPSGG  G A+D+  +
Sbjct: 84  TMQLIEPDVATVGLGMCASMGQFLLSSGTKGKRYLTSHARVLMHQPSGGIGGTATDVCIN 143

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+ I+ +K+ ++E+  +  G T EE+ +  + DH  +A EA D+G VDK++ +
Sbjct: 144 AELIMDMKKTMSELTAEQTGHTLEEIYRDNEYDHWFTAQEALDYGFVDKLVTT 196


>gi|117927946|ref|YP_872497.1| ATP-dependent Clp protease proteolytic subunit [Acidothermus
           cellulolyticus 11B]
 gi|117648409|gb|ABK52511.1| ATP-dependent Clp protease proteolytic subunit ClpP [Acidothermus
           cellulolyticus 11B]
          Length = 236

 Score =  187 bits (474), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 91/191 (47%), Positives = 142/191 (74%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP   E+T++G+R ++ Y++L +ERI+F+  QI+D  A  + AQLL LE+ +P ++I L
Sbjct: 33  IVPEFRERTSQGDRIHNPYTKLFEERIIFLGVQIDDISANDVMAQLLTLESMDPDRDIQL 92

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQFI+P + T CMGQAAS  ++LL+AG KG R ALPN+RIL+
Sbjct: 93  YINSPGGSFTALTAIYDTMQFIRPEVQTICMGQAASAAAVLLAAGTKGKRMALPNSRILI 152

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP     GQASD+E  A+++++++R L  +  K+ G++ E++ + ++RD I++A EA +
Sbjct: 153 HQPYSEAGGQASDLEIAAREVLRMRRLLEHLLAKHTGRSEEQIRQDIERDKILTAEEAVE 212

Query: 198 WGVVDKVLMSR 208
           +G++D+V+ +R
Sbjct: 213 YGIIDEVITTR 223


>gi|307566218|ref|ZP_07628666.1| endopeptidase Clp [Prevotella amnii CRIS 21A-A]
 gi|307345076|gb|EFN90465.1| endopeptidase Clp [Prevotella amnii CRIS 21A-A]
          Length = 221

 Score =  187 bits (474), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 88/191 (46%), Positives = 134/191 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P ++E+        D++SRL+ +RI+F+  QI+D+ A  + AQLL+L++ +  K+IS+
Sbjct: 30  LNPYILEERQLNVTQMDVFSRLMMDRIIFLGTQIDDYTANTLQAQLLYLDSVDSGKDISI 89

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+ IYDTMQFI   ++T C G AASMG++LL AG++G R  LP++R+++
Sbjct: 90  YINSPGGSVTAGLGIYDTMQFISSDVATICTGMAASMGAVLLVAGQEGKRSVLPHSRVMI 149

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I K K+ L  I   +  + +E+V    DR++ M+A EA  
Sbjct: 150 HQPLGGVQGQASDIEIEAKEIQKFKKELYTIISTHSHQPFEKVWNDSDRNYWMTAEEAKA 209

Query: 198 WGVVDKVLMSR 208
           +G++D+VL+ +
Sbjct: 210 YGMIDEVLVRK 220


>gi|226470102|emb|CAX70332.1| ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit
           homolog [Schistosoma japonicum]
          Length = 179

 Score =  187 bits (474), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 83/132 (62%), Positives = 113/132 (85%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+V+++T  GER+YDIYSRLLK+RI+ + G I D +A L+ AQLL+L++E+ +  I
Sbjct: 46  MSLVPIVLDKTTHGERAYDIYSRLLKDRIICLMGAISDEVAGLVVAQLLYLQSEDKKIPI 105

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG+AIYDTMQFIKPP++T+C+GQA+SMGSLLL+AG  G+RFALP++RI
Sbjct: 106 HIYINSPGGVVTAGLAIYDTMQFIKPPVATWCVGQASSMGSLLLAAGAPGLRFALPHSRI 165

Query: 136 LLHQPSGGFSGQ 147
           ++HQPSG   G+
Sbjct: 166 MVHQPSGSAHGE 177


>gi|302833543|ref|XP_002948335.1| hypothetical protein VOLCADRAFT_80119 [Volvox carteri f.
           nagariensis]
 gi|300266555|gb|EFJ50742.1| hypothetical protein VOLCADRAFT_80119 [Volvox carteri f.
           nagariensis]
          Length = 256

 Score =  186 bits (473), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 82/176 (46%), Positives = 130/176 (73%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ER   + S+L ++RIV + G ++D MA L+ AQLL+L++ +P+++I++Y+NSPGG VTAG
Sbjct: 65  ERFQGVVSQLFQQRIVRLGGAVDDDMANLLVAQLLYLDSVDPKRDITMYVNSPGGSVTAG 124

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
           MA++DTM+ I+P +ST C+G AASMG+ +L++G++G R++LPN+RI++HQP GG  GQA+
Sbjct: 125 MAVFDTMRHIRPDVSTCCIGMAASMGAFILTSGQQGKRYSLPNSRIMIHQPLGGAQGQAT 184

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           DIE  A +I+  K  LN    +  G++ E + K  DRD  MS  EA ++G++D ++
Sbjct: 185 DIEIQANEILHHKLTLNGYLAQFSGQSMETITKDTDRDFFMSPQEAIEYGLIDAII 240


>gi|167471039|ref|ZP_02335743.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pestis
           FV-1]
          Length = 119

 Score =  186 bits (473), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 88/121 (72%), Positives = 105/121 (86%), Gaps = 2/121 (1%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D     + LVPMVVEQT+RGERSYDI+SRLLKERI+F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--ERDQFAPNMALVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDHMANLIT 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIFLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLT 118

Query: 121 A 121
           A
Sbjct: 119 A 119


>gi|76262827|gb|ABA41488.1| ATP-dependent Clp protease proteolytic subunit [Carica papaya]
          Length = 306

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 89/193 (46%), Positives = 131/193 (67%), Gaps = 6/193 (3%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G  PMV       ER   + S+L + RI+   G ++D MA +I AQLL+L+A +P K+I 
Sbjct: 102 GPPPMV------QERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAVDPNKDIV 155

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+NSPGG VTAGMA++DTM+ I+P +ST C+G AASMG+ LLSAG KG R++LPN+RI+
Sbjct: 156 MYVNSPGGSVTAGMAVFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIM 215

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  G  +DI+  A +++  K  LN     + G++ E + +  DRD  MSA EA 
Sbjct: 216 IHQPLGGAQGGQTDIDIQANEMLHHKANLNSYLAYHTGQSLERINQDTDRDFFMSAKEAK 275

Query: 197 DWGVVDKVLMSRI 209
           ++G++D V+M+ +
Sbjct: 276 EYGLIDGVIMNPL 288


>gi|298243372|ref|ZP_06967179.1| Endopeptidase Clp [Ktedonobacter racemifer DSM 44963]
 gi|297556426|gb|EFH90290.1| Endopeptidase Clp [Ktedonobacter racemifer DSM 44963]
          Length = 215

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 91/180 (50%), Positives = 129/180 (71%), Gaps = 2/180 (1%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           E SY I   LLK+RI+ +   I+D +A      LL+LE E+  ++ISLY+NSPGG VTAG
Sbjct: 36  EGSYGIEDLLLKDRIILIGKPIDDMVAYQTIMLLLYLEHEDSSQDISLYLNSPGGSVTAG 95

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP--SGGFSGQ 147
           +AIYDTMQ+IKP +ST C+G A SM S+LL+ G KG RF+LPN+ IL+HQP  SG  +GQ
Sbjct: 96  LAIYDTMQYIKPDVSTVCVGMAMSMASVLLAGGAKGKRFSLPNSTILIHQPLISGEIAGQ 155

Query: 148 ASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           ASDIE  A++I++ +  LNE+  K+ G+  E + +  DRD+ M+A +A ++G++D+VL S
Sbjct: 156 ASDIEIEAREIIRTRSELNELLAKHTGQPVERIAQDSDRDNYMTAHQAVEYGLIDEVLES 215


>gi|315443632|ref|YP_004076511.1| ATP-dependent Clp protease proteolytic subunit ClpP [Mycobacterium
           sp. Spyr1]
 gi|315261935|gb|ADT98676.1| ATP-dependent Clp protease proteolytic subunit ClpP [Mycobacterium
           sp. Spyr1]
          Length = 198

 Score =  186 bits (472), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 86/173 (49%), Positives = 119/173 (68%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL ERI+F+  Q++D +A  +CAQ+L L AE+P K+I LYINSPGG ++AGMAIYD
Sbjct: 17  VYERLLAERIIFLGSQVDDDIANRLCAQILLLSAEDPTKDIHLYINSPGGSISAGMAIYD 76

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM      ++T+ MG AASMG  LL+AG KG R+ALP+ARIL+HQP GG +G A+DI   
Sbjct: 77  TMVLAPCDVATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGITGGAADIAIQ 136

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+    IK+ +  +  +  G+T E +E   DRD   +A EA ++G VD ++ S
Sbjct: 137 AEQFASIKKEMFRLNAEFTGQTIERIEADSDRDRWFTAQEALEYGFVDHIITS 189


>gi|315224014|ref|ZP_07865855.1| ATP-dependent Clp protease proteolytic subunit [Capnocytophaga
           ochracea F0287]
 gi|314945985|gb|EFS97993.1| ATP-dependent Clp protease proteolytic subunit [Capnocytophaga
           ochracea F0287]
          Length = 219

 Score =  186 bits (472), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 86/188 (45%), Positives = 133/188 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           + P ++E+        D++SRL+ +RI+F+   + D +A ++ AQLLFLE+ +  K+I +
Sbjct: 29  MTPYIMEERQLNVAQMDVFSRLMMDRIIFLGTDVNDQVANIVTAQLLFLESVDSAKDIQI 88

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+ IYDTMQFIKP ++T C G AASM ++LL AG +G R ALP++R+++
Sbjct: 89  YINSPGGSVYAGLGIYDTMQFIKPDVATICTGIAASMAAVLLCAGTEGKRSALPHSRVMI 148

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  G ASD+E + ++++K+K  L EI  K+  + + +V K  +RD+ M A EA +
Sbjct: 149 HQPSGGAQGVASDMEINLKEMLKLKNELYEIIAKHSKQPFAKVYKDSERDYWMIAREAKE 208

Query: 198 WGVVDKVL 205
           +G++D+VL
Sbjct: 209 YGMIDEVL 216


>gi|317970581|ref|ZP_07971971.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           CB0205]
          Length = 200

 Score =  186 bits (472), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 90/177 (50%), Positives = 129/177 (72%), Gaps = 1/177 (0%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ER  DIY+RL  ERI+F+  ++ D +A  + AQ+L+L++++  K I LYINSPGG VTAG
Sbjct: 18  ERWVDIYTRLGVERILFLGSEVNDAIANSLVAQMLYLDSDDNSKPIYLYINSPGGSVTAG 77

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG-QA 148
           +AIYDT+Q++K  + T C+G AASMG+ LL AG KG R ALP++RI++HQP GG S  QA
Sbjct: 78  LAIYDTIQYVKSDVVTICVGLAASMGAFLLGAGTKGKRLALPHSRIMIHQPLGGTSQRQA 137

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           SDIE  A++I+++K  LN       G+  E++EK  DRD+ MSA EA ++G++D+V+
Sbjct: 138 SDIEIEAREILRMKDMLNNSMAGMTGQPVEKIEKDTDRDYFMSAEEAMNYGLIDRVI 194


>gi|262201986|ref|YP_003273194.1| endopeptidase Clp [Gordonia bronchialis DSM 43247]
 gi|262085333|gb|ACY21301.1| Endopeptidase Clp [Gordonia bronchialis DSM 43247]
          Length = 207

 Score =  186 bits (472), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 85/171 (49%), Positives = 120/171 (70%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           ++ RLL+ERI+F+  Q++D +A  +CAQ+L L AE+P K+I+LYINSPGG VTAGMAI+D
Sbjct: 29  VFERLLRERIIFLGTQVDDDIANRLCAQILLLAAEDPHKDINLYINSPGGSVTAGMAIFD 88

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ     ++T+ MG AASMG  LL+AG KG R ALP+ARI++HQPS G  G A+DI   
Sbjct: 89  TMQLATCDVATYAMGMAASMGQFLLAAGAKGKRHALPHARIMMHQPSAGIGGTAADIAIQ 148

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+     K+ +N +  +  G+  E++E   DRD   +A EA ++G+VD V+
Sbjct: 149 AEQFAATKKEMNRLNAEFSGQPLEKIEADADRDKWFTAEEAKEYGLVDHVI 199


>gi|256820835|ref|YP_003142114.1| Endopeptidase Clp [Capnocytophaga ochracea DSM 7271]
 gi|256582418|gb|ACU93553.1| Endopeptidase Clp [Capnocytophaga ochracea DSM 7271]
          Length = 219

 Score =  186 bits (472), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 86/188 (45%), Positives = 133/188 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           + P ++E+        D++SRL+ +RI+F+   + D +A ++ AQLLFLE+ +  K+I +
Sbjct: 29  MTPYIMEERQLNVAQMDVFSRLMMDRIIFLGTDVNDQVANIVTAQLLFLESVDSAKDIQI 88

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+ IYDTMQFIKP ++T C G AASM ++LL AG +G R ALP++R+++
Sbjct: 89  YINSPGGSVYAGLGIYDTMQFIKPDVATICTGIAASMAAVLLCAGTEGKRSALPHSRVMI 148

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  G ASD+E + ++++K+K  L EI  K+  + + +V K  +RD+ M A EA +
Sbjct: 149 HQPSGGAQGVASDMEINLKEMLKLKNELYEIIAKHSKQPFAKVYKDSERDYWMIAREAKE 208

Query: 198 WGVVDKVL 205
           +G++D+VL
Sbjct: 209 YGMIDEVL 216


>gi|145223175|ref|YP_001133853.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           gilvum PYR-GCK]
 gi|145215661|gb|ABP45065.1| ATP-dependent Clp protease proteolytic subunit ClpP [Mycobacterium
           gilvum PYR-GCK]
          Length = 218

 Score =  186 bits (472), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 86/173 (49%), Positives = 119/173 (68%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL ERI+F+  Q++D +A  +CAQ+L L AE+P K+I LYINSPGG ++AGMAIYD
Sbjct: 37  VYERLLAERIIFLGSQVDDDIANRLCAQILLLSAEDPTKDIHLYINSPGGSISAGMAIYD 96

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM      ++T+ MG AASMG  LL+AG KG R+ALP+ARIL+HQP GG +G A+DI   
Sbjct: 97  TMVLAPCDVATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGITGGAADIAIQ 156

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+    IK+ +  +  +  G+T E +E   DRD   +A EA ++G VD ++ S
Sbjct: 157 AEQFASIKKEMFRLNAEFTGQTIERIEADSDRDRWFTAQEALEYGFVDHIITS 209


>gi|261749127|ref|YP_003256812.1| ATP-dependent Clp protease proteolytic subunit 2 [Blattabacterium
           sp. (Periplaneta americana) str. BPLAN]
 gi|261497219|gb|ACX83669.1| ATP-dependent Clp protease proteolytic subunit 2 [Blattabacterium
           sp. (Periplaneta americana) str. BPLAN]
          Length = 234

 Score =  186 bits (472), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 86/192 (44%), Positives = 133/192 (69%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           + P +VE+        D++SRL+ +R++F+   IED +A ++ AQLLFL++ +  K+I +
Sbjct: 33  MTPYIVEERKLNVAQMDVFSRLMMDRVIFLGTPIEDQVANIVQAQLLFLQSVDSLKDIQI 92

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+ IYDTMQ ++P ++T C G AASM ++LL AG K  R  L ++R+++
Sbjct: 93  YINSPGGDVHAGLGIYDTMQIVEPDVATICTGMAASMAAVLLCAGVKNKRSGLKHSRVMI 152

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE   ++I+K+KR L EI   + G   E++EK  DRD+ M++ EA +
Sbjct: 153 HQPMGGTHGQASDIEITVREILKLKRELYEIIAIHSGSPIEKIEKDSDRDYWMTSEEAKE 212

Query: 198 WGVVDKVLMSRI 209
           +G++D+VL  ++
Sbjct: 213 YGMIDEVLKEKV 224


>gi|91216686|ref|ZP_01253651.1| ATP-dependent Clp protease proteolytic subunit 2 [Psychroflexus
           torquis ATCC 700755]
 gi|91185155|gb|EAS71533.1| ATP-dependent Clp protease proteolytic subunit 2 [Psychroflexus
           torquis ATCC 700755]
          Length = 224

 Score =  186 bits (472), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 88/189 (46%), Positives = 128/189 (67%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            + P ++E+      + D++SRL+ +RI+F+   I D +A +I AQLLFLE+ +  K+I 
Sbjct: 33  AMTPNIIEERQMNAVAMDVFSRLMMDRIIFLGLPINDQVANIIQAQLLFLESTDSSKDIQ 92

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG V AG+ IYDTMQFIKP ++T   G AASMG++LL AG  G R  LP++R++
Sbjct: 93  IYINSPGGSVYAGLGIYDTMQFIKPDVATINTGIAASMGAVLLCAGTAGKRSGLPHSRVM 152

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA DIE  A  I+ +K  L  I  K+ GK+Y+EV +  DRD  M +  A 
Sbjct: 153 IHQPMGGAQGQADDIEITANQIIMLKEELYTIISKHSGKSYDEVYQDGDRDFWMKSDAAK 212

Query: 197 DWGVVDKVL 205
           ++G++D++L
Sbjct: 213 EYGMIDEIL 221


>gi|288924566|ref|ZP_06418503.1| Clp protease [Prevotella buccae D17]
 gi|315607428|ref|ZP_07882424.1| ATP-dependent Clp protease proteolytic subunit [Prevotella buccae
           ATCC 33574]
 gi|288338353|gb|EFC76702.1| Clp protease [Prevotella buccae D17]
 gi|315250860|gb|EFU30853.1| ATP-dependent Clp protease proteolytic subunit [Prevotella buccae
           ATCC 33574]
          Length = 222

 Score =  186 bits (472), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 85/191 (44%), Positives = 136/191 (71%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P ++E+        D++SRL+ +RI+F+  +I+D+ A  + AQLL+L++ +P K+IS+
Sbjct: 31  LNPYILEERQLNVTQMDVFSRLMMDRIIFLGTEIDDYTANTLQAQLLYLDSTDPGKDISI 90

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG VTAG+ IYDTMQF+   ++T C G AASM ++LL AG++G R ALP++R+++
Sbjct: 91  YLNSPGGSVTAGLGIYDTMQFVSSDVATICTGMAASMAAVLLVAGKEGKRQALPHSRVMI 150

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I K K+ L  I  ++    +++V +  DR++ M+A EA +
Sbjct: 151 HQPLGGVQGQASDIEIEAKEIQKFKKELYNIISEHSHTPFDKVWQDSDRNYWMTADEAKE 210

Query: 198 WGVVDKVLMSR 208
           +G++D VL ++
Sbjct: 211 YGMIDMVLKNK 221


>gi|258648499|ref|ZP_05735968.1| Clp protease [Prevotella tannerae ATCC 51259]
 gi|260851264|gb|EEX71133.1| Clp protease [Prevotella tannerae ATCC 51259]
          Length = 235

 Score =  186 bits (472), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 88/188 (46%), Positives = 132/188 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P ++E+        D++SRL+ +RI+F+  QI+D+ A  + AQLL+L++ +P K+IS+
Sbjct: 46  LNPYILEERQLNVTQMDVFSRLMMDRIIFLGTQIDDYTANTLQAQLLYLDSADPGKDISI 105

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+ IYDTMQFI   ++T C G AASM ++LL AG++G R  L ++R+++
Sbjct: 106 YINSPGGSVYAGLGIYDTMQFIGSDVATICTGMAASMAAVLLVAGKEGKRSGLKHSRVMI 165

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I K+K+ L  I   +    +E+V +  DRD+ M+A EA +
Sbjct: 166 HQPMGGAQGQASDIEITAREIQKLKKELYTIIADHSHTDFEKVWQDSDRDYWMTAEEAKE 225

Query: 198 WGVVDKVL 205
           +G++DKVL
Sbjct: 226 YGMIDKVL 233


>gi|260063635|ref|YP_003196715.1| putative ATP-dependent of ClpP protease, proteolytic subunit
           [Robiginitalea biformata HTCC2501]
 gi|88783080|gb|EAR14253.1| putative ATP-dependent of ClpP protease, proteolytic subunit
           [Robiginitalea biformata HTCC2501]
          Length = 182

 Score =  186 bits (471), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 88/178 (49%), Positives = 130/178 (73%), Gaps = 1/178 (0%)

Query: 28  RGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVT 87
           +G+    I +R+L+ER VF+ GQ++D  A  +  +LL+L+ +N  KEI LYINSPGG VT
Sbjct: 5   KGKIQEQIDARMLEERKVFLWGQVDDDSAKHVIDRLLYLDLQN-NKEIQLYINSPGGYVT 63

Query: 88  AGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQ 147
           +G +IYDT+  +K P+ST C G AASMGS+LLSAG+KG RF  P+AR+++HQPSGG  GQ
Sbjct: 64  SGFSIYDTITSLKSPVSTICSGLAASMGSILLSAGKKGRRFVQPHARVMIHQPSGGARGQ 123

Query: 148 ASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           AS+IE  A++I+K +    +I  +NCG+ +E++ K  +RD+ M A E+ ++G+VD +L
Sbjct: 124 ASNIEIQAKEILKTREIGAQILAENCGQPFEKIMKDFNRDYWMDAKESVEYGIVDDIL 181


>gi|262341363|ref|YP_003284218.1| ATP-dependent Clp protease, proteolytic subunit 2 [Blattabacterium
           sp. (Blattella germanica) str. Bge]
 gi|262272700|gb|ACY40608.1| ATP-dependent Clp protease, proteolytic subunit 2 [Blattabacterium
           sp. (Blattella germanica) str. Bge]
          Length = 237

 Score =  186 bits (471), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 88/192 (45%), Positives = 133/192 (69%)

Query: 14  VFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQK 73
           +   + P +VE+        D++SRL+ +R++F+   IED +A ++ AQLLFL++ +  K
Sbjct: 40  IIQSMTPYIVEERKLNVAQMDVFSRLMMDRVIFLGTPIEDQVANIVQAQLLFLQSVDSVK 99

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I +YINSPGG V AG+ IYDTMQ ++P +ST C G AASM ++LL AG K  R AL ++
Sbjct: 100 DIQIYINSPGGDVYAGLGIYDTMQIVEPDVSTICTGMAASMAAVLLCAGVKNKRSALKHS 159

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           RI++HQP GG  GQASDIE   ++I+K+K+ L EI  K+ G   E++E   DRD+ M++ 
Sbjct: 160 RIMIHQPIGGTQGQASDIEITVREILKLKKELYEIISKHSGVPIEKIEIDSDRDYWMTSQ 219

Query: 194 EACDWGVVDKVL 205
           EA ++G++D+VL
Sbjct: 220 EAKEYGMIDEVL 231


>gi|329962626|ref|ZP_08300574.1| endopeptidase Clp [Bacteroides fluxus YIT 12057]
 gi|328529657|gb|EGF56555.1| endopeptidase Clp [Bacteroides fluxus YIT 12057]
          Length = 220

 Score =  186 bits (471), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 88/191 (46%), Positives = 133/191 (69%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P ++E+        D++SRL+ +RI+F+  QI+D+ A  + AQLL+L++ +P K+IS+
Sbjct: 30  LNPYILEERQLNVTQLDVFSRLMMDRIIFLGTQIDDYTANTLQAQLLYLDSVDPGKDISI 89

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+ IYDTMQFI   ++T C G AASM ++LL AG +G R AL ++R+++
Sbjct: 90  YINSPGGSVYAGLGIYDTMQFISSDVATICTGMAASMAAVLLVAGAEGKRSALTHSRVMI 149

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I K+K+ L  I   +    +++V    DRD+ M+A EA +
Sbjct: 150 HQPMGGAQGQASDIEITAREIQKLKKELYTIIANHSHTDFDKVWADSDRDYWMTAQEAKE 209

Query: 198 WGVVDKVLMSR 208
           +G+VD+VL+ +
Sbjct: 210 YGMVDEVLIKK 220


>gi|148241694|ref|YP_001226851.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           RCC307]
 gi|147850004|emb|CAK27498.1| Protease subunit of ATP-dependent Clp protease [Synechococcus sp.
           RCC307]
          Length = 200

 Score =  186 bits (471), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 89/177 (50%), Positives = 132/177 (74%), Gaps = 1/177 (0%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ER  DIY+RL  ERI+F+ G++ D +A  + AQ+L+L++++  K I LYINSPGG VTAG
Sbjct: 18  ERWVDIYTRLGVERILFLGGEVNDGVANALVAQMLYLDSDDSSKPIYLYINSPGGSVTAG 77

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG-QA 148
           +AIYDT+Q+IK  + T C+G AASMG+ LL+AG KG R ALP++RI++HQP GG +  QA
Sbjct: 78  LAIYDTIQYIKSDVVTICVGLAASMGAFLLAAGTKGKRVALPHSRIMIHQPLGGTAQRQA 137

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           SDIE  A++I+++K +LN+      G+T E++ K  DRD+ +SA +A  +G++D+V+
Sbjct: 138 SDIEIEAREILRMKDQLNKQLADMSGQTIEKITKDTDRDYFLSADDAKAYGLIDRVI 194


>gi|86739912|ref|YP_480312.1| ClpP1 peptidase. Serine peptidase. MEROPS family S14 [Frankia sp.
           CcI3]
 gi|108935915|sp|Q2JDQ9|CLPP1_FRASC RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|86566774|gb|ABD10583.1| ATP-dependent Clp protease proteolytic subunit ClpP [Frankia sp.
           CcI3]
          Length = 213

 Score =  186 bits (471), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 90/180 (50%), Positives = 125/180 (69%), Gaps = 2/180 (1%)

Query: 28  RGERSYD--IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV 85
           +G  ++D  +++RLL  RIVF+   +ED +A  ICAQLL L AE+P ++I LYINSPGG 
Sbjct: 21  QGGPAFDDQVFNRLLANRIVFLGSVVEDSIANAICAQLLLLNAEDPTRDIFLYINSPGGS 80

Query: 86  VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS 145
           V+AGMAIYDTMQF++  ++T  +G AASMG  LL AG  G R++LP+ARI++HQPSGG  
Sbjct: 81  VSAGMAIYDTMQFVENDVATVSLGLAASMGQFLLCAGASGKRYSLPHARIMMHQPSGGIG 140

Query: 146 GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           G ASDI   A+ ++  KR + E    + G+  E++E+  DRD   +A EA D+G VD V+
Sbjct: 141 GTASDIAIQAEQMLYTKRMMQERIAFHTGQPIEQIERDSDRDRWFTAEEAKDYGFVDHVV 200


>gi|284990113|ref|YP_003408667.1| endopeptidase Clp [Geodermatophilus obscurus DSM 43160]
 gi|284063358|gb|ADB74296.1| Endopeptidase Clp [Geodermatophilus obscurus DSM 43160]
          Length = 211

 Score =  186 bits (471), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 87/171 (50%), Positives = 121/171 (70%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL+ERI+F+  Q++D +A  + AQ+L L AE+P+++I LYINSPGG V+AGMAIYD
Sbjct: 26  VYERLLRERIIFLGTQVDDVIANQLAAQMLLLSAEDPKRDIHLYINSPGGSVSAGMAIYD 85

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQFI   ++T+ MG AASMG  LL+AG KG R+ALP+ARI++HQPS G  G A+DI   
Sbjct: 86  TMQFIDCDVATYGMGLAASMGQFLLTAGTKGKRYALPHARIMMHQPSAGVGGTAADIAIQ 145

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A    + K+ LNE+   + G+  E + +  DRD   +A EA ++G VD V+
Sbjct: 146 ADLFRRTKQELNELQSFHTGQPVERINEDSDRDRWFTAQEALEYGFVDHVV 196


>gi|281421760|ref|ZP_06252759.1| Clp protease [Prevotella copri DSM 18205]
 gi|281404255|gb|EFB34935.1| Clp protease [Prevotella copri DSM 18205]
          Length = 220

 Score =  186 bits (471), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 85/189 (44%), Positives = 134/189 (70%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  QI+D+ A  + AQLL+L++ +  K+IS+Y+
Sbjct: 32  PYILEERQLNVTQMDVFSRLMMDRIIFLGTQIDDYTANTLQAQLLYLDSVDSGKDISIYL 91

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VTAG+ IYDTMQFI   ++T C G AASM ++LL +G++G R ALP++R+++HQ
Sbjct: 92  NSPGGSVTAGLGIYDTMQFISSDVATICTGMAASMAAVLLVSGQEGKRSALPHSRVMIHQ 151

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I+K+K+ L  I   +    Y++V    DR++ M+A EA ++G
Sbjct: 152 PLGGVQGQASDIEIEAREILKMKKELYTIISDHSHTPYDKVYADSDRNYWMTAEEAKEYG 211

Query: 200 VVDKVLMSR 208
           ++D VL+ +
Sbjct: 212 MIDNVLVRK 220


>gi|111221348|ref|YP_712142.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
           [Frankia alni ACN14a]
 gi|111148880|emb|CAJ60559.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
           [Frankia alni ACN14a]
          Length = 213

 Score =  186 bits (471), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 90/180 (50%), Positives = 125/180 (69%), Gaps = 2/180 (1%)

Query: 28  RGERSYD--IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV 85
           +G  ++D  +++RLL  RIVF+   +ED +A  ICAQLL L AE+P ++I LYINSPGG 
Sbjct: 21  QGGPAFDDQVFNRLLANRIVFLGSVVEDSIANAICAQLLLLNAEDPTRDIFLYINSPGGS 80

Query: 86  VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS 145
           V+AGMAIYDTMQF++  ++T  +G AASMG  LL AG  G R++LP+ARI++HQPSGG  
Sbjct: 81  VSAGMAIYDTMQFVENDVATVSLGLAASMGQFLLCAGAPGKRYSLPHARIMMHQPSGGIG 140

Query: 146 GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           G ASDI   A+ ++  KR + E    + G+  E++E+  DRD   +A EA D+G VD V+
Sbjct: 141 GTASDIAIQAEQMLYTKRMMQERIAFHTGQPIEQIERDSDRDRWFTAEEAKDYGFVDHVV 200


>gi|260909476|ref|ZP_05916180.1| ATP-dependent Clp protease proteolytic subunit [Prevotella sp. oral
           taxon 472 str. F0295]
 gi|288929611|ref|ZP_06423455.1| Clp protease [Prevotella sp. oral taxon 317 str. F0108]
 gi|260636401|gb|EEX54387.1| ATP-dependent Clp protease proteolytic subunit [Prevotella sp. oral
           taxon 472 str. F0295]
 gi|288329116|gb|EFC67703.1| Clp protease [Prevotella sp. oral taxon 317 str. F0108]
          Length = 220

 Score =  186 bits (471), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 86/191 (45%), Positives = 133/191 (69%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P ++E+        D++SRL+ +RI+F+  +I D+ A  + AQLL+L++ +  K+IS+
Sbjct: 30  LNPYILEERQLNVTQMDVFSRLMMDRIIFLGTEINDYTANTLQAQLLYLDSADAGKDISI 89

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+ IYDTMQFI   ++T C G AASM ++LL +G++G R ALP++R+++
Sbjct: 90  YINSPGGSVTAGLGIYDTMQFISSDVATICTGMAASMAAVLLVSGQEGKRSALPHSRVMI 149

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I+K K+ L  I   +    +E+V    DR++ M+A EA +
Sbjct: 150 HQPLGGVQGQASDIEIEAKEILKFKKELYTIISNHSHTPFEKVWNDSDRNYWMNAEEAKE 209

Query: 198 WGVVDKVLMSR 208
           +G++D VL+ +
Sbjct: 210 YGMIDSVLVKK 220


>gi|302760453|ref|XP_002963649.1| hypothetical protein SELMODRAFT_67117 [Selaginella moellendorffii]
 gi|302785934|ref|XP_002974738.1| hypothetical protein SELMODRAFT_57153 [Selaginella moellendorffii]
 gi|300157633|gb|EFJ24258.1| hypothetical protein SELMODRAFT_57153 [Selaginella moellendorffii]
 gi|300168917|gb|EFJ35520.1| hypothetical protein SELMODRAFT_67117 [Selaginella moellendorffii]
          Length = 235

 Score =  186 bits (471), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 87/176 (49%), Positives = 124/176 (70%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ER   + ++L + RI+   G ++D MA LI AQLL+L+A +P+K+I +Y+NSPGG VTAG
Sbjct: 48  ERFQSVITQLFQHRIIRCGGAVDDDMANLIVAQLLYLDAADPKKDIVMYVNSPGGSVTAG 107

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
           MA++DTM+ I+P +ST C+G AASMG+ LLSAG KG R++LPN+RI++HQP GG  GQ S
Sbjct: 108 MAVFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGQQS 167

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           DIE  A +I+  K  LN     + G+  E + +  DRD  MS  EA ++G++D V+
Sbjct: 168 DIEIQANEILHHKANLNSYLSYHTGQPLERIIQDTDRDFFMSPKEAQEYGLIDGVI 223


>gi|123966708|ref|YP_001011789.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus str. MIT 9515]
 gi|123201074|gb|ABM72682.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9515]
          Length = 201

 Score =  185 bits (470), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 89/177 (50%), Positives = 132/177 (74%), Gaps = 1/177 (0%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ER  DIY+RL  ERI+F+  ++ D +A  + AQ+L+L++++  K I LYINSPGG VTAG
Sbjct: 18  ERWVDIYTRLGVERILFLGQEVNDGIANSLVAQMLYLDSDDNTKPIYLYINSPGGSVTAG 77

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG-QA 148
           +AIYDT++++K  + T C+G AASMG+ LL AG KG R ALP++RI++HQP GG S  QA
Sbjct: 78  LAIYDTIKYVKSDVVTICVGLAASMGAFLLGAGTKGKRVALPHSRIMIHQPLGGTSQRQA 137

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           SDIE  A++I++IK  LN+      G+++E++EK  DRD+ +SA EA ++G++D+V+
Sbjct: 138 SDIEIEAREILRIKDMLNKSMADMTGQSFEKIEKDTDRDYFLSAEEAKNYGLIDRVI 194


>gi|78779795|ref|YP_397907.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus str. MIT 9312]
 gi|123969045|ref|YP_001009903.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus str. AS9601]
 gi|126696838|ref|YP_001091724.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus str. MIT 9301]
 gi|157413876|ref|YP_001484742.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus str. MIT 9215]
 gi|254526963|ref|ZP_05139015.1| Clp protease [Prochlorococcus marinus str. MIT 9202]
 gi|115311346|sp|Q319H4|CLPP2_PROM9 RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|78713294|gb|ABB50471.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Prochlorococcus marinus str. MIT 9312]
 gi|123199155|gb|ABM70796.1| Clp protease proteolytic subunit [Prochlorococcus marinus str.
           AS9601]
 gi|126543881|gb|ABO18123.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9301]
 gi|157388451|gb|ABV51156.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9215]
 gi|221538387|gb|EEE40840.1| Clp protease [Prochlorococcus marinus str. MIT 9202]
          Length = 203

 Score =  185 bits (470), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 89/177 (50%), Positives = 132/177 (74%), Gaps = 1/177 (0%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ER  DIY+RL  ERI+F+  ++ D +A  + AQ+L+L++++  K I LYINSPGG VTAG
Sbjct: 18  ERWVDIYTRLGVERILFLGQEVNDGIANSLVAQMLYLDSDDNSKPIYLYINSPGGSVTAG 77

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG-QA 148
           +AIYDT++++K  + T C+G AASMG+ LL+AG KG R ALP++RI++HQP GG S  QA
Sbjct: 78  LAIYDTIKYVKSDVVTICVGLAASMGAFLLAAGTKGKRVALPHSRIMIHQPLGGTSQRQA 137

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           SDIE  A++I++IK  LN       G+++E++EK  DRD+ +SA EA ++G++D+V+
Sbjct: 138 SDIEIEAKEILRIKDMLNMSMADMTGQSFEKIEKDTDRDYFLSAEEAKNYGLIDRVI 194


>gi|18378982|ref|NP_563657.1| CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5); serine-type endopeptidase
           [Arabidopsis thaliana]
 gi|75313059|sp|Q9S834|CLPP5_ARATH RecName: Full=ATP-dependent Clp protease proteolytic subunit 5,
           chloroplastic; AltName: Full=Endopeptidase ClpP5;
           Short=nClpP5; AltName: Full=nClpP1; Flags: Precursor
 gi|9972387|gb|AAG10637.1|AC022521_15 ATP-dependent Clp protease subunit ClpP [Arabidopsis thaliana]
 gi|4887543|emb|CAB43488.1| ATP-dependent Clp protease subunit ClpP [Arabidopsis thaliana]
 gi|5360579|dbj|BAA82065.1| nClpP1 [Arabidopsis thaliana]
 gi|21536639|gb|AAM60971.1| ATP-dependent Clp protease proteolytic subunit ClpP5 [Arabidopsis
           thaliana]
 gi|89274139|gb|ABD65590.1| At1g02560 [Arabidopsis thaliana]
 gi|332189323|gb|AEE27444.1| ATP-dependent Clp protease, protease subunit [Arabidopsis thaliana]
          Length = 298

 Score =  185 bits (470), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 91/193 (47%), Positives = 132/193 (68%), Gaps = 6/193 (3%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G  PMV E      R   I S+L + RI+   G ++D MA +I AQLL+L+A +P K+I 
Sbjct: 103 GPPPMVQE------RFQSIISQLFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPTKDIV 156

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+NSPGG VTAGMAI+DTM+ I+P +ST C+G AASMG+ LLSAG KG R++LPN+RI+
Sbjct: 157 MYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIM 216

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  G  +DI+  A +++  K  LN     + G++ E++ +  DRD  MSA EA 
Sbjct: 217 IHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDFFMSAKEAK 276

Query: 197 DWGVVDKVLMSRI 209
           ++G++D V+M+ +
Sbjct: 277 EYGLIDGVIMNPL 289


>gi|108800544|ref|YP_640741.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium sp.
           MCS]
 gi|119869683|ref|YP_939635.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium sp.
           KMS]
 gi|126436160|ref|YP_001071851.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium sp.
           JLS]
 gi|108770963|gb|ABG09685.1| ATP-dependent Clp protease proteolytic subunit ClpP [Mycobacterium
           sp. MCS]
 gi|119695772|gb|ABL92845.1| ATP-dependent Clp protease proteolytic subunit ClpP / ClpP1
           peptidase, Serine peptidase, MEROPS family S14
           [Mycobacterium sp. KMS]
 gi|126235960|gb|ABN99360.1| ATP-dependent Clp protease proteolytic subunit ClpP [Mycobacterium
           sp. JLS]
          Length = 195

 Score =  185 bits (470), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 86/173 (49%), Positives = 119/173 (68%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL ERI+F+  Q++D +A  +CAQ+L L AE+P K+I LYINSPGG ++AGMAIYD
Sbjct: 14  VYERLLAERIIFLGSQVDDDIANRLCAQILLLSAEDPTKDIHLYINSPGGSISAGMAIYD 73

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM      ++T+ MG AASMG  LL+AG KG R+ALP+ARIL+HQP GG +G A+DI   
Sbjct: 74  TMVLAPCDVATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGITGGAADIAIQ 133

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+    IK+ +  +  +  G+T E +E   DRD   +A EA ++G VD ++ S
Sbjct: 134 AEQFAAIKKEMFRLNAEFTGQTIERIEADSDRDRWFTAQEALEYGFVDHIITS 186


>gi|86141806|ref|ZP_01060330.1| Protease subunit of ATP-dependent Clp protease [Leeuwenhoekiella
           blandensis MED217]
 gi|85831369|gb|EAQ49825.1| Protease subunit of ATP-dependent Clp protease [Leeuwenhoekiella
           blandensis MED217]
          Length = 181

 Score =  185 bits (470), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 91/181 (50%), Positives = 128/181 (70%), Gaps = 1/181 (0%)

Query: 25  QTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG 84
           +T +G+    I ++LL+ER VF+ GQ++D  A  +  +LL+L+A +   EI  YINSPGG
Sbjct: 2   ETKKGKPQDLIDAKLLEERKVFLWGQVDDKSAKHVVDRLLYLDALS-NDEIQFYINSPGG 60

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
            VT+G +IYDT++ IK P+ST C G AASMGS+LLS GEKG RF  P+AR+++HQPSGG 
Sbjct: 61  YVTSGFSIYDTIKSIKSPVSTICTGLAASMGSILLSVGEKGRRFIQPHARVMIHQPSGGA 120

Query: 145 SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            GQASDIE  AQ+I+K K    +I   NCG+ +++V K  +RDH M A E+  +G+VD +
Sbjct: 121 RGQASDIEITAQEILKTKELSAKILADNCGQDFDKVMKDFNRDHWMGAEESVAYGIVDGI 180

Query: 205 L 205
           +
Sbjct: 181 V 181


>gi|150026123|ref|YP_001296949.1| ATP-dependent Clp protease proteolytic subunit [Flavobacterium
           psychrophilum JIP02/86]
 gi|149772664|emb|CAL44147.1| S14 family, ATP-dependent Clp protease proteolytic subunit
           [Flavobacterium psychrophilum JIP02/86]
          Length = 233

 Score =  185 bits (470), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 83/188 (44%), Positives = 134/188 (71%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           + P ++E+        D++SRL+ +RI+F+   I+D +A ++ AQLLFLE+ +  K+I +
Sbjct: 44  MTPYIIEERQLNISQLDVFSRLMMDRIIFLGTGIDDQIANIVQAQLLFLESADASKDIQI 103

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG V AG+ IYDTMQ+IKP ++T C G AASMG++LL AG  G R ALP++R+++
Sbjct: 104 YLNSPGGSVYAGLGIYDTMQYIKPDVATICTGMAASMGAVLLCAGAAGKRSALPHSRVMI 163

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  G A+D+E + ++++K+K  L  I   + G+T+++V    +RD+ M A +A +
Sbjct: 164 HQPSGGAQGVATDMEINLREMLKLKDELYNIISHHSGQTFDKVHADSERDYWMIADQAKE 223

Query: 198 WGVVDKVL 205
           +G++D+VL
Sbjct: 224 YGMIDEVL 231


>gi|120404994|ref|YP_954823.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           vanbaalenii PYR-1]
 gi|119957812|gb|ABM14817.1| ATP-dependent Clp protease proteolytic subunit ClpP [Mycobacterium
           vanbaalenii PYR-1]
          Length = 194

 Score =  185 bits (470), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 86/173 (49%), Positives = 119/173 (68%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL ERI+F+  Q++D +A  +CAQ+L L AE+P K+I LYINSPGG ++AGMAIYD
Sbjct: 14  VYERLLSERIIFLGSQVDDDIANRLCAQILLLSAEDPTKDIHLYINSPGGSISAGMAIYD 73

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM      ++T+ MG AASMG  LL+AG KG R+ALP+ARIL+HQP GG +G A+DI   
Sbjct: 74  TMVLAPCDVATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGITGGAADIAIQ 133

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+    IK+ +  +  +  G+T E +E   DRD   +A EA ++G VD ++ S
Sbjct: 134 AEQFAVIKKEMFRLNAEFTGQTIERIEADSDRDRWFTAQEALEYGFVDHIITS 186


>gi|325280713|ref|YP_004253255.1| ATP-dependent Clp protease proteolytic subunit [Odoribacter
           splanchnicus DSM 20712]
 gi|324312522|gb|ADY33075.1| ATP-dependent Clp protease proteolytic subunit [Odoribacter
           splanchnicus DSM 20712]
          Length = 225

 Score =  185 bits (470), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 84/188 (44%), Positives = 134/188 (71%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           + P ++E+      + D++SRL+ +RI+F+   I+D +A +I AQLLFLE  +P ++I L
Sbjct: 33  ITPNIIEERQLNIATMDVFSRLMMDRIIFLGVPIDDDVANIIMAQLLFLETADPGRDIQL 92

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y NSPGG + AG+ IYDTMQ+I   ++T C G AASM ++L++AG KG R AL ++RI++
Sbjct: 93  YFNSPGGSIYAGLGIYDTMQYINCDVATICTGLAASMAAVLMTAGTKGKRSALTHSRIMI 152

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP  G  GQA+DIE  ++++ K+K+ L  I  ++ G+ Y++VEK  DRD+ M+A+EA +
Sbjct: 153 HQPMSGVQGQAADIEITSREVQKLKKELYTIISEHSGQPYKKVEKDSDRDYWMTAAEAKE 212

Query: 198 WGVVDKVL 205
           +G++D +L
Sbjct: 213 YGMIDSIL 220


>gi|318040432|ref|ZP_07972388.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           CB0101]
          Length = 200

 Score =  185 bits (470), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 90/177 (50%), Positives = 129/177 (72%), Gaps = 1/177 (0%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ER  DIY+RL  ERI+F+  ++ D +A  + AQ+L+L++E+  K I LYINSPGG VTAG
Sbjct: 18  ERWVDIYTRLGVERILFLGSEVNDAIANSLVAQMLYLDSEDNSKPIYLYINSPGGSVTAG 77

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG-QA 148
           +AIYDT+Q++K  + T C+G AASMG+ LL AG KG R ALP++RI++HQP GG S  QA
Sbjct: 78  LAIYDTIQYVKSDVVTICVGLAASMGAFLLGAGTKGKRLALPHSRIMIHQPLGGTSQRQA 137

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           SDIE  A++I++IK  LN+      G+   ++EK  DRD+ +SA EA ++G++D+V+
Sbjct: 138 SDIEIEAREILRIKDMLNQSMADMTGQELAKIEKDTDRDYFLSAEEAKNYGLIDRVI 194


>gi|328907724|gb|EGG27488.1| Clp protease [Propionibacterium sp. P08]
          Length = 212

 Score =  185 bits (470), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 87/188 (46%), Positives = 126/188 (67%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G+  M   +T     + ++Y  LL+ RIVF+  +++D  A  +CAQ+L L AE+P+ +I 
Sbjct: 11  GMPAMAGPETGGAGMTDNVYQSLLRNRIVFLGSEVKDENANALCAQMLLLNAEDPEADIY 70

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VT GMAIYDTMQ+I   ++T  MG AASMG  LL+AG  G R+ALP+A+IL
Sbjct: 71  LYINSPGGSVTGGMAIYDTMQWISNDVATVTMGMAASMGQFLLTAGTPGKRYALPHAKIL 130

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  G A++I  +A+ +   KR L+++   + G T E++ +  DRDH  +A EA 
Sbjct: 131 MHQPLGGVGGTATEIAINAKMLKDTKRELSQLNADHSGHTLEQILEDSDRDHWFTAQEAL 190

Query: 197 DWGVVDKV 204
           D+G++D V
Sbjct: 191 DYGLIDYV 198


>gi|297843050|ref|XP_002889406.1| hypothetical protein ARALYDRAFT_887394 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297335248|gb|EFH65665.1| hypothetical protein ARALYDRAFT_887394 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 298

 Score =  185 bits (470), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 87/180 (48%), Positives = 128/180 (71%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ER   I S+L + RI+   G ++D MA +I AQLL+L+A +P K+I +Y+NSPGG VTAG
Sbjct: 110 ERFQSIISQLFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPTKDIVMYVNSPGGSVTAG 169

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
           MAI+DTM+ I+P +ST C+G AASMG+ LLSAG KG R++LPN+RI++HQP GG  G  +
Sbjct: 170 MAIFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQT 229

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           DI+  A +++  K  LN     + G++ E++ +  DRD  MSA EA ++G++D V+M+ +
Sbjct: 230 DIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVIMNPL 289


>gi|311743054|ref|ZP_07716862.1| ATP-dependent Clp protease proteolytic subunit [Aeromicrobium
           marinum DSM 15272]
 gi|311313734|gb|EFQ83643.1| ATP-dependent Clp protease proteolytic subunit [Aeromicrobium
           marinum DSM 15272]
          Length = 200

 Score =  185 bits (470), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 86/188 (45%), Positives = 133/188 (70%), Gaps = 1/188 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P   E+T+ G R  D Y++L ++RI+F+   I D +A  + AQLL L+   P ++IS+Y
Sbjct: 5   IPQWEERTSYGFRRIDPYAKLFEDRIIFLGTPISDDVANAVIAQLLCLQVMEPDRDISIY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TA  AIYDTM+++KP + TFC+GQAAS  ++LL AG  G RFALPNARIL+H
Sbjct: 65  INSPGGSFTAMTAIYDTMRYLKPDVQTFCLGQAASAAAVLLGAGTPGKRFALPNARILIH 124

Query: 139 QP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP + G  GQ SD+E  A +I++++  + ++   + G++ E+V + +DRD I++A +A +
Sbjct: 125 QPYTEGTGGQISDLEIQANEIMRMRSLMEQMISTSTGRSPEDVSRDVDRDKILTAQQALE 184

Query: 198 WGVVDKVL 205
           +G++D+VL
Sbjct: 185 YGLIDQVL 192


>gi|152968202|ref|YP_001363986.1| endopeptidase Clp [Kineococcus radiotolerans SRS30216]
 gi|151362719|gb|ABS05722.1| Endopeptidase Clp [Kineococcus radiotolerans SRS30216]
          Length = 198

 Score =  185 bits (469), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 90/187 (48%), Positives = 136/187 (72%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVE T RGER+ D++SRLL +RIVF+ G+I+D +A ++ AQL+ L +E+   EISLY
Sbjct: 5   IPHVVETTARGERTSDVFSRLLSDRIVFLHGEIDDGVANVVIAQLVHLASESSTAEISLY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           +NSPGG  TA MAIYDTMQF++P ++TFC+GQAAS  ++LL+AG  G R  L ++R+LLH
Sbjct: 65  VNSPGGSATALMAIYDTMQFVQPDVATFCVGQAASAAAVLLAAGAPGKRSVLEHSRVLLH 124

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  G A+D++  A+++++I+  +  +  ++ G   E +   LDRD ++  +EA  +
Sbjct: 125 QPSGGAQGTAADLQIQAREVLRIRSEIERVLARHTGHPVERLRADLDRDLVLPGAEAVAY 184

Query: 199 GVVDKVL 205
           GV D+V+
Sbjct: 185 GVADRVV 191


>gi|255645951|gb|ACU23464.1| unknown [Glycine max]
          Length = 304

 Score =  185 bits (469), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 89/193 (46%), Positives = 132/193 (68%), Gaps = 6/193 (3%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G  PMV E      R   + S+L + RI+   G ++D MA +I AQLL+L+A +P K+I 
Sbjct: 100 GPPPMVAE------RFQSVISQLFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPNKDIV 153

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+NSPGG VTAGMAI+DTM+ I+P +ST C+G AASMG+ LLSAG KG R++LPN+RI+
Sbjct: 154 MYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIM 213

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  G  +DI+  A +++  K  LN     + G++ +++ +  DRD  MSA EA 
Sbjct: 214 IHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLDKINQDTDRDFFMSAKEAK 273

Query: 197 DWGVVDKVLMSRI 209
           ++G++D V+M+ +
Sbjct: 274 EYGLIDGVIMNPL 286


>gi|213962584|ref|ZP_03390846.1| Clp protease [Capnocytophaga sputigena Capno]
 gi|213954910|gb|EEB66230.1| Clp protease [Capnocytophaga sputigena Capno]
          Length = 219

 Score =  185 bits (469), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 85/188 (45%), Positives = 133/188 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           + P ++E+        D++SRL+ +RI+F+   + D +A ++ AQLLFLE+ +  K+I +
Sbjct: 29  MTPYIMEERQLNVAQMDVFSRLMMDRIIFLGTDVNDQVANIVTAQLLFLESVDSAKDIQI 88

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+ +YDTMQFIKP ++T C G AASM ++LL AG +G R ALP++R+++
Sbjct: 89  YINSPGGSVYAGLGMYDTMQFIKPDVATICTGIAASMAAVLLCAGAEGKRSALPHSRVMI 148

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  G ASD+E + ++++K+K  L EI  K+  + + +V K  +RD+ M A EA +
Sbjct: 149 HQPSGGAQGVASDMEINLKEMLKLKNELYEIIAKHSKQPFAKVYKDSERDYWMIAHEAKE 208

Query: 198 WGVVDKVL 205
           +G++D+VL
Sbjct: 209 YGMIDEVL 216


>gi|270283864|ref|ZP_05965115.2| Clp protease [Bifidobacterium gallicum DSM 20093]
 gi|270277585|gb|EFA23439.1| Clp protease [Bifidobacterium gallicum DSM 20093]
          Length = 196

 Score =  185 bits (469), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 85/171 (49%), Positives = 123/171 (71%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I++RLL++RI+++  +++D MA  ICAQ+L L AE+P K+I LYINSPGG +TAGMAIYD
Sbjct: 14  IFNRLLQDRIIWMGEEVKDEMANRICAQMLMLAAEDPDKDIWLYINSPGGSITAGMAIYD 73

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ IKP ++T  +G  ASMG  LLS+G KG RF   +AR+L+HQPSGG  G  +D+  +
Sbjct: 74  TMQLIKPDVATVGIGMCASMGQFLLSSGTKGKRFLTSHARVLMHQPSGGIGGTTTDVRIN 133

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+ I+ +K+ L E+  +  G T EE+ +  + DH  +A EA ++G VDK++
Sbjct: 134 AELIMNMKKTLAELTAEQTGHTVEEIYRDNEYDHWFTAQEALEYGFVDKLV 184


>gi|296394283|ref|YP_003659167.1| endopeptidase Clp [Segniliparus rotundus DSM 44985]
 gi|296181430|gb|ADG98336.1| Endopeptidase Clp [Segniliparus rotundus DSM 44985]
          Length = 200

 Score =  185 bits (469), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 83/171 (48%), Positives = 123/171 (71%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           ++ RLL+ERI+F+  +++D +A  +CAQ+L L AE+P K+ISLYINSPGG ++AGMAIYD
Sbjct: 21  VFERLLRERIIFLGSEVDDDIANRLCAQVLLLTAEDPSKDISLYINSPGGSISAGMAIYD 80

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ  +  I+T+ MG AASMG  LL+AG KG R+ALP+ARI++HQPS G  G A+DI   
Sbjct: 81  TMQLSECDIATYAMGMAASMGQFLLAAGAKGKRYALPHARIMMHQPSAGIYGAAADIAIQ 140

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+ +   K+ +  +  +  G+T E++ +  +RD   +A+EA ++G VD V+
Sbjct: 141 AEQLAATKKEMTRLNAEFTGQTVEKIHEDSERDRWFTAAEAKEYGFVDHVI 191


>gi|325268720|ref|ZP_08135349.1| ATP-dependent Clp protease, protease subunit [Prevotella
           multiformis DSM 16608]
 gi|324988964|gb|EGC20918.1| ATP-dependent Clp protease, protease subunit [Prevotella
           multiformis DSM 16608]
          Length = 253

 Score =  185 bits (469), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 87/191 (45%), Positives = 134/191 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P ++E+        D++SRL+ +RI+F+  QI+D+ A  + AQLL+L++ +P K+IS+
Sbjct: 53  LNPYILEERQLNVTQMDVFSRLMMDRIIFLGTQIDDYTANTLQAQLLYLDSVDPGKDISI 112

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+ IYDTMQFI   ++T C G AASM ++LL AG++G R AL ++R+++
Sbjct: 113 YINSPGGSVTAGLGIYDTMQFISSDVATICTGMAASMAAVLLVAGQEGKRSALTHSRVMI 172

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I K K+ L  I   +  + +++V    DR++ M+A EA +
Sbjct: 173 HQPLGGVQGQASDIEIEAREIQKFKKELYTIISNHSHQPFDKVWNDSDRNYWMTAEEARE 232

Query: 198 WGVVDKVLMSR 208
           +G++D+VL  +
Sbjct: 233 YGMIDEVLTRK 243


>gi|282878163|ref|ZP_06286960.1| Clp protease [Prevotella buccalis ATCC 35310]
 gi|281299741|gb|EFA92113.1| Clp protease [Prevotella buccalis ATCC 35310]
          Length = 229

 Score =  185 bits (469), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 86/191 (45%), Positives = 132/191 (69%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P ++E+        D++SRL+ +RI+F+  +I+D+ A  + AQLL+L++ +  K+IS+
Sbjct: 30  LNPYILEERQLNVTQLDVFSRLMMDRIIFLGTEIDDYTANTLQAQLLYLDSADSGKDISI 89

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+ IYDTMQFI   ++T C G AASM ++LL AG++G R AL ++R+++
Sbjct: 90  YINSPGGSVTAGLGIYDTMQFISSDVATICTGMAASMAAVLLVAGQEGKRSALTHSRVMI 149

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I+K K+ L  I   +    YE+V +  DR++ M A +A  
Sbjct: 150 HQPLGGVQGQASDIEIEAKEIIKFKKELFTIIANHSHTPYEKVYRDSDRNYWMDAEQAKK 209

Query: 198 WGVVDKVLMSR 208
           +G++D VL+ +
Sbjct: 210 YGMIDTVLVRK 220


>gi|308235223|ref|ZP_07665960.1| ATP-dependent Clp protease proteolytic subunit 2 [Gardnerella
           vaginalis ATCC 14018]
 gi|311114524|ref|YP_003985745.1| endopeptidase Clp [Gardnerella vaginalis ATCC 14019]
 gi|310946018|gb|ADP38722.1| endopeptidase Clp [Gardnerella vaginalis ATCC 14019]
          Length = 203

 Score =  185 bits (469), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 82/173 (47%), Positives = 127/173 (73%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I+++LLK+RI+++  +++D  A +ICAQ+L L A++P+K+I LYINSPGG +TAGMAIYD
Sbjct: 23  IFNQLLKDRIIWLGSEVKDENANIICAQMLMLAAQDPKKDIWLYINSPGGSITAGMAIYD 82

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ I+P ++T  +G AASMG  LLS+G  G RF   +AR+L+HQPSGG  G A+D+  +
Sbjct: 83  TMQLIEPDVATIAVGMAASMGQFLLSSGTPGKRFITSHARVLMHQPSGGVGGTATDVRIN 142

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+ I+ +K+ L+E+  +  G T EE+ +  + DH  +A +A ++G VDK++ +
Sbjct: 143 AELIMDMKKTLSELTAQQTGHTVEEIYRDNEYDHWFTAQQALEYGFVDKIVTT 195


>gi|163840395|ref|YP_001624800.1| ATP-dependent Clp protease proteolytic subunit [Renibacterium
           salmoninarum ATCC 33209]
 gi|162953871|gb|ABY23386.1| ATP-dependent endopeptidase clp proteolytic subunit [Renibacterium
           salmoninarum ATCC 33209]
          Length = 206

 Score =  185 bits (469), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 92/190 (48%), Positives = 139/190 (73%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+E+T  GERSYD++SRL+++RIVFV  +I+D +A +I AQL++LE++NP ++I+LY
Sbjct: 6   MPTVLEKTPFGERSYDVFSRLVRDRIVFVGSEIDDDVANVIMAQLIYLESDNPDEDINLY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TA MAI DTM F++P ++T CMGQAAS  ++LL+AG KG R  L ++R+LLH
Sbjct: 66  INSPGGSHTALMAILDTMDFVRPDVATVCMGQAASAAAILLAAGAKGKRSVLAHSRVLLH 125

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPS    G  +D+  HA+++ +I+ +L EI  ++ G++ E +     RD I +A EA D+
Sbjct: 126 QPSSQGRGTLADLSVHAKEMSRIRHQLEEILAEHTGQSTEILHADTSRDKIFTAQEAVDY 185

Query: 199 GVVDKVLMSR 208
           G+ D ++ SR
Sbjct: 186 GLADAIISSR 195


>gi|229817803|ref|ZP_04448085.1| hypothetical protein BIFANG_03079 [Bifidobacterium angulatum DSM
           20098]
 gi|229785592|gb|EEP21706.1| hypothetical protein BIFANG_03079 [Bifidobacterium angulatum DSM
           20098]
          Length = 207

 Score =  184 bits (468), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 83/174 (47%), Positives = 126/174 (72%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I++RLLK+RI+++  +++D MA  I AQ+L L AE+P+K+I LYINSPGG +TAGMAIYD
Sbjct: 28  IFNRLLKDRIIWMGEEVKDEMANRISAQMLMLAAEDPKKDIWLYINSPGGSITAGMAIYD 87

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ I+P ++T  +G  ASMG  LLS+G KG R+   +AR+L+HQPSGG  G  +D+  +
Sbjct: 88  TMQLIEPDVATVGLGMCASMGQFLLSSGTKGKRYLTSHARVLMHQPSGGIGGTTTDVRIN 147

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           A+ I+ +K+ ++E+  +  G T EE+ +  + DH  +A EA ++G VDK++ +R
Sbjct: 148 AELIMDMKKTMSELTAEQTGHTVEEIYRDNEYDHWFTAQEALEYGFVDKIITTR 201


>gi|297626026|ref|YP_003687789.1| ATP-dependent Clp protease proteolytic subunit 1 (Endopeptidase Clp
           1) [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296921791|emb|CBL56351.1| ATP-dependent Clp protease proteolytic subunit 1 (Endopeptidase Clp
           1) [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 211

 Score =  184 bits (468), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 84/173 (48%), Positives = 119/173 (68%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           S ++Y  LL  RIVF+  +++D  +  ICAQ+L L AE+P ++I LYINSPGG + +GMA
Sbjct: 24  SDNVYQSLLANRIVFLGSEVKDENSNAICAQMLLLNAEDPHRDIYLYINSPGGSIDSGMA 83

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYDTMQ+I   ++T  +G AASMG  LLS G KG RFALP+ARIL+HQPSGG  G ASD+
Sbjct: 84  IYDTMQWISNDVATVALGLAASMGQFLLSGGAKGKRFALPHARILMHQPSGGIGGTASDV 143

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           +  A+  + +K  +  +   + G+T E++EK  DRD   +A +A ++G +D V
Sbjct: 144 KIQAEQSIHLKHEMAALIAGHTGQTVEQIEKDSDRDRWFTAQQALEYGFIDHV 196


>gi|255326612|ref|ZP_05367689.1| Clp protease [Rothia mucilaginosa ATCC 25296]
 gi|283457916|ref|YP_003362518.1| protease subunit of ATP-dependent Clp protease [Rothia mucilaginosa
           DY-18]
 gi|255296352|gb|EET75692.1| Clp protease [Rothia mucilaginosa ATCC 25296]
 gi|283133933|dbj|BAI64698.1| protease subunit of ATP-dependent Clp protease [Rothia mucilaginosa
           DY-18]
          Length = 217

 Score =  184 bits (468), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 88/170 (51%), Positives = 116/170 (68%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y+ LLKERI+++  ++ D  A LIC+Q+L L AE+P+ +I LYINSPGG VTAGMAIYD
Sbjct: 35  VYNSLLKERIIWLGSEVRDSNANLICSQMLLLSAEDPEADIYLYINSPGGSVTAGMAIYD 94

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ I   + T   G AASMG  LL+AG  G R+A PNARIL+HQP GG  G ASDI   
Sbjct: 95  TMQLIPNDVVTVVTGMAASMGQFLLTAGTIGKRYATPNARILMHQPLGGIGGTASDIRTQ 154

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           A+ I+ +K+RL EI  +  GK+ E + K  DRD+  +A E  ++G  D +
Sbjct: 155 AELILDMKKRLAEITAERTGKSLETILKDNDRDNWFNAEEGLEYGFFDHI 204


>gi|15485610|emb|CAC67407.1| Clp protease 2 proteolytic subunit [Solanum lycopersicum]
          Length = 299

 Score =  184 bits (468), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 86/178 (48%), Positives = 125/178 (70%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ER   + S+L + RI+   G ++D MA +I AQLL+L+A +P K+I +Y+NSPGG VTAG
Sbjct: 107 ERFQSVISQLFQYRIIRCGGAVDDDMANVIVAQLLYLDAVDPTKDIVMYVNSPGGSVTAG 166

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
           MA++DTM+ I+P +ST C+G AASMG+ LLSAG KG R++LPN+RI++HQP GG  G  S
Sbjct: 167 MAVFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQS 226

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           DIE  A +++  K  LN       G++ + + +  DRD  MSA EA ++G++D V+M+
Sbjct: 227 DIEIQANEMLHHKANLNGYLAYQTGQSLDRINQDTDRDFFMSAKEAKEYGLIDGVIMN 284


>gi|160890572|ref|ZP_02071575.1| hypothetical protein BACUNI_03015 [Bacteroides uniformis ATCC 8492]
 gi|270295709|ref|ZP_06201909.1| Clp protease [Bacteroides sp. D20]
 gi|317479886|ref|ZP_07939003.1| Clp protease [Bacteroides sp. 4_1_36]
 gi|156859571|gb|EDO53002.1| hypothetical protein BACUNI_03015 [Bacteroides uniformis ATCC 8492]
 gi|270273113|gb|EFA18975.1| Clp protease [Bacteroides sp. D20]
 gi|316903960|gb|EFV25797.1| Clp protease [Bacteroides sp. 4_1_36]
          Length = 220

 Score =  184 bits (468), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 87/191 (45%), Positives = 133/191 (69%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P ++E+        D++SRL+ +RI+F+  Q++D+ A  + AQLL+L++ +P K+IS+
Sbjct: 30  LNPYILEERQLNVTQLDVFSRLMMDRIIFLGTQVDDYTANTLQAQLLYLDSVDPGKDISI 89

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+ IYDTMQFI   ++T C G AASM ++LL AG +G R AL ++R+++
Sbjct: 90  YINSPGGSVYAGLGIYDTMQFISSDVATICTGMAASMAAVLLVAGAEGKRSALTHSRVMI 149

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I K+K+ L  I   +    +++V    DRD+ M+A EA +
Sbjct: 150 HQPMGGAQGQASDIEITAREIQKLKKELYTIIADHSHTPFDKVWADSDRDYWMTAQEAKE 209

Query: 198 WGVVDKVLMSR 208
           +G+VD+VL+ +
Sbjct: 210 YGMVDEVLIKK 220


>gi|33861870|ref|NP_893431.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
 gi|67460515|sp|Q7V0F1|CLPP2_PROMP RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|33640238|emb|CAE19773.1| Clp protease proteolytic subunit [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 201

 Score =  184 bits (468), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 89/177 (50%), Positives = 131/177 (74%), Gaps = 1/177 (0%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ER  DIY+RL  ERI+F+  ++ D +A  + AQ+L+L++++  K I LYINSPGG VTAG
Sbjct: 18  ERWVDIYTRLGVERILFLGQEVNDGIANSLVAQMLYLDSDDNTKPIYLYINSPGGSVTAG 77

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG-QA 148
           +AIYDT++++K  + T C+G AASMG+ LL AG KG R ALP++RI++HQP GG S  QA
Sbjct: 78  LAIYDTIKYVKSDVVTICVGLAASMGAFLLGAGTKGKRVALPHSRIMIHQPLGGTSQRQA 137

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           SDIE  A++I++IK  LN       G+++E++EK  DRD+ +SA EA ++G++D+V+
Sbjct: 138 SDIEIEAREILRIKDMLNHSMSDMTGQSFEKIEKDTDRDYFLSAEEAKNYGLIDRVI 194


>gi|332170082|gb|AEE19337.1| Endopeptidase Clp [Krokinobacter diaphorus 4H-3-7-5]
          Length = 178

 Score =  184 bits (468), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 90/170 (52%), Positives = 120/170 (70%), Gaps = 1/170 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I S+LL +R +F+ G ++D  A  +  +LL+L+A+    EI L+INSPGG VT+G A+YD
Sbjct: 7   IDSQLLDDRKIFLWGMVDDKSAKHVIDRLLYLDAQG-HGEIQLFINSPGGYVTSGFAMYD 65

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           T++ IK P+ST C G AASMGSLLLS GEKG RF  P+AR+++HQPSGG  GQASDIE  
Sbjct: 66  TIKMIKSPVSTICTGLAASMGSLLLSVGEKGRRFIQPHARVMIHQPSGGARGQASDIEIT 125

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           AQ+IVK K    +I   NCG+T+E++ K   RDH M A E+  +G+ D V
Sbjct: 126 AQEIVKTKELSAQILADNCGQTFEKIMKDFQRDHWMGAEESVAYGIADGV 175


>gi|145342132|ref|XP_001416147.1| chloroplast Clp protease, subunit of ClpP peptidase complex
           [Ostreococcus lucimarinus CCE9901]
 gi|144576372|gb|ABO94440.1| chloroplast Clp protease, subunit of ClpP peptidase complex
           [Ostreococcus lucimarinus CCE9901]
          Length = 251

 Score =  184 bits (468), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 87/186 (46%), Positives = 128/186 (68%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ER   + S+L+ +RI+ + G ++D    LI AQLL+L+A +P K+I+LY+NSPGG VTAG
Sbjct: 56  ERFQSVASQLMSQRIIRLGGAVDDDSCNLIVAQLLWLDAADPTKDITLYVNSPGGSVTAG 115

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
           MA++DTM+ I+P +ST C+G AASMG+ LL++G  G R++LPN+RI++HQP GG  GQA+
Sbjct: 116 MAVFDTMRHIRPNVSTVCVGLAASMGAFLLASGHPGKRYSLPNSRIMIHQPLGGAQGQAA 175

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           DIE  A +I+  K  LN    +   K  E V +  DRD  MSA EA ++G++D ++    
Sbjct: 176 DIEIQANEIMHHKSTLNGYLAEFTKKPLETVMEDTDRDFFMSAKEAVEYGLIDAIIEHPT 235

Query: 210 DIEEKS 215
           D+  K+
Sbjct: 236 DVAVKA 241


>gi|271968525|ref|YP_003342721.1| endopeptidase Clp [Streptosporangium roseum DSM 43021]
 gi|270511700|gb|ACZ89978.1| Endopeptidase Clp [Streptosporangium roseum DSM 43021]
          Length = 214

 Score =  184 bits (468), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 92/192 (47%), Positives = 128/192 (66%), Gaps = 1/192 (0%)

Query: 17  GLVPMVVEQTNRGERSYD-IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           G  P  + Q N   R  D +Y RLL+ERI+ +  Q+ D +A  ICA+LL L A++P ++I
Sbjct: 12  GSGPESMSQPNGSFRLEDQLYQRLLRERIIVLGTQVNDEIANRICAELLLLAADDPDRDI 71

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMAIYD M+++   + T  MG AASMG  LL AGEKG R+ALP+ARI
Sbjct: 72  WLYINSPGGSVTAGMAIYDMMEYVPNNVCTVAMGLAASMGQFLLCAGEKGKRYALPHARI 131

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  G A+DI   A+ ++ +K+ L E    + G+  +++E   DRD   +A EA
Sbjct: 132 MMHQPSGGIGGTAADIAIQAEQMLYVKKTLAERIAFHTGQPLDQIEADSDRDRWFTAEEA 191

Query: 196 CDWGVVDKVLMS 207
            D+G +D+V+ S
Sbjct: 192 KDYGFIDQVVRS 203


>gi|189463685|ref|ZP_03012470.1| hypothetical protein BACINT_00016 [Bacteroides intestinalis DSM
           17393]
 gi|189438635|gb|EDV07620.1| hypothetical protein BACINT_00016 [Bacteroides intestinalis DSM
           17393]
          Length = 220

 Score =  184 bits (468), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 87/191 (45%), Positives = 133/191 (69%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P ++E+        D++SRL+ +RI+F+  Q++D+ A  + AQLL+L++ +P K+IS+
Sbjct: 30  LNPYILEERQLNVTQLDVFSRLMMDRIIFLGTQVDDYTANTLQAQLLYLDSVDPGKDISI 89

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+ IYDTMQFI   ++T C G AASM ++LL AG +G R AL ++R+++
Sbjct: 90  YINSPGGSVYAGLGIYDTMQFITSDVATICTGMAASMAAVLLVAGAEGKRSALTHSRVMI 149

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I K+K+ L  I   +    +++V    DRD+ M+A EA +
Sbjct: 150 HQPMGGAQGQASDIEITAREIQKLKKELYTIIADHSHTPFDKVWADSDRDYWMTAQEAKE 209

Query: 198 WGVVDKVLMSR 208
           +G+VD+VL+ +
Sbjct: 210 YGMVDEVLIKK 220


>gi|296139184|ref|YP_003646427.1| endopeptidase Clp [Tsukamurella paurometabola DSM 20162]
 gi|296027318|gb|ADG78088.1| Endopeptidase Clp [Tsukamurella paurometabola DSM 20162]
          Length = 197

 Score =  184 bits (468), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 83/171 (48%), Positives = 121/171 (70%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +YSRLL+ RI+F+  ++ D +A  +CAQ+L L AE+P K+I+LYINSPGG ++AGMAI+D
Sbjct: 20  VYSRLLESRIIFLGSEVNDDIANQLCAQMLLLSAEDPSKDINLYINSPGGSISAGMAIFD 79

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM+F++  ++T+ MG AASMG  LL+AG KG R+ALP+ARI++HQPS G  G A+DI   
Sbjct: 80  TMEFVECDVATYAMGMAASMGEFLLAAGAKGKRYALPHARIMMHQPSAGIGGTAADIAIQ 139

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+     K  +N +  +  G+  E++E   DRD   +A +A D+G VD V+
Sbjct: 140 AELFRNTKVEMNRLNAQFTGQPIEKIEADADRDKWFTAEQARDYGFVDHVV 190


>gi|126657142|ref|ZP_01728313.1| ATP-dependent protease; ClpP [Cyanothece sp. CCY0110]
 gi|126621685|gb|EAZ92395.1| ATP-dependent protease; ClpP [Cyanothece sp. CCY0110]
          Length = 147

 Score =  184 bits (467), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 84/139 (60%), Positives = 110/139 (79%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+E + RGER++DIYSRLL+ERIVF+  ++ D  + LI AQLLFLEAE+P K+I L
Sbjct: 1   MIPTVIETSGRGERAFDIYSRLLRERIVFLGQEVRDENSNLIVAQLLFLEAEDPDKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG+ I+DTM  I+P + T C+G AASMG+ LLSAG KG R +LPN+RI++
Sbjct: 61  YINSPGGSVSAGLGIFDTMNQIRPDVCTICIGLAASMGAFLLSAGAKGKRMSLPNSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQ 156
           HQP GG  GQA+DIE  A+
Sbjct: 121 HQPLGGAQGQATDIEIQAK 139


>gi|88855133|ref|ZP_01129798.1| ATP-dependent Clp protease proteolytic subunit [marine
           actinobacterium PHSC20C1]
 gi|88815661|gb|EAR25518.1| ATP-dependent Clp protease proteolytic subunit [marine
           actinobacterium PHSC20C1]
          Length = 224

 Score =  184 bits (467), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 91/193 (47%), Positives = 137/193 (70%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++RI+F+  QI+D  A  + AQLL LE+++P ++I +
Sbjct: 24  ILPTFEERTAYGYKRQDPYAKLFEDRIIFLGVQIDDASADDVMAQLLVLESQDPDRDIVM 83

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+I+P I T  +GQAAS  +++ + G KG R ALPNARI++
Sbjct: 84  YINSPGGSFTAMTAIYDTMQYIRPHIQTVVLGQAASAAAVITAGGTKGKRLALPNARIMI 143

Query: 138 HQPSGGFSG--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+GG  G  QASDIE  A++I++++  L E    +  +T E+V K ++RD I+SA+EA
Sbjct: 144 HQPAGGSEGSSQASDIEIQAREILRMRTWLEETLSHHSNRTAEQVNKDIERDKILSATEA 203

Query: 196 CDWGVVDKVLMSR 208
            ++G++D+VL SR
Sbjct: 204 VEYGLIDQVLTSR 216


>gi|124007705|ref|ZP_01692408.1| Clp protease [Microscilla marina ATCC 23134]
 gi|123986827|gb|EAY26599.1| Clp protease [Microscilla marina ATCC 23134]
          Length = 232

 Score =  184 bits (467), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 87/185 (47%), Positives = 131/185 (70%)

Query: 22  VVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS 81
           V+E+     R  D++SRL+ +RI+F+   I+D +A ++ AQLLFLE+ + +K+I +YINS
Sbjct: 44  VIEERPTNFREIDVFSRLIMDRIIFLGMGIDDLVANVVTAQLLFLESVDSKKDILVYINS 103

Query: 82  PGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
           PGG V AG+ IYDTMQ++ P + T C G AASMG++LL+ G +  R AL ++R+++HQP 
Sbjct: 104 PGGSVYAGLGIYDTMQYVNPDVVTICTGLAASMGAVLLAGGAENKRSALEHSRVMIHQPL 163

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
           GG  GQASDIE  A+ I+ +K  L EI  K+ GK  E++EK  DRD+ M +  A ++G++
Sbjct: 164 GGAQGQASDIEITAKQILILKHELYEILAKHSGKAIEDIEKHADRDYWMKSDAAKEYGLI 223

Query: 202 DKVLM 206
           D+VL+
Sbjct: 224 DEVLV 228


>gi|325855169|ref|ZP_08171792.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Prevotella denticola CRIS 18C-A]
 gi|327312568|ref|YP_004328005.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Prevotella denticola F0289]
 gi|325483906|gb|EGC86850.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Prevotella denticola CRIS 18C-A]
 gi|326946024|gb|AEA21909.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Prevotella denticola F0289]
          Length = 227

 Score =  184 bits (467), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 86/191 (45%), Positives = 134/191 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P ++E+        D++SRL+ +RI+F+  QI+D+ A  + AQLL+L++ +P K+IS+
Sbjct: 30  LNPYILEERQLNVTQMDVFSRLMMDRIIFLGTQIDDYTANTLQAQLLYLDSVDPGKDISI 89

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+ IYDTMQFI   ++T C G AASM ++LL AG++G R AL ++R+++
Sbjct: 90  YINSPGGSVTAGLGIYDTMQFISSDVATICTGMAASMAAVLLVAGQEGKRSALTHSRVMI 149

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I K K+ L  I   +  + +++V    DR++ M++ EA +
Sbjct: 150 HQPLGGVQGQASDIEIEAREIQKFKKELYTIISNHSHQPFDKVWNDSDRNYWMTSEEARE 209

Query: 198 WGVVDKVLMSR 208
           +G++D+VL  +
Sbjct: 210 YGMIDEVLTRK 220


>gi|50843047|ref|YP_056274.1| ATP-dependent Clp protease proteolytic subunit 1 [Propionibacterium
           acnes KPA171202]
 gi|282854724|ref|ZP_06264059.1| Clp protease [Propionibacterium acnes J139]
 gi|67460472|sp|Q6A7E9|CLPP2_PROAC RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|50840649|gb|AAT83316.1| ATP-dependent Clp protease proteolytic subunit 1 [Propionibacterium
           acnes KPA171202]
 gi|282582306|gb|EFB87688.1| Clp protease [Propionibacterium acnes J139]
          Length = 212

 Score =  184 bits (467), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 86/188 (45%), Positives = 126/188 (67%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G+  M   +T     + ++Y  LL+ RIVF+  +++D  A  +CAQ+L L AE+P+ +I 
Sbjct: 11  GMPAMAGPETGGAGMTDNVYQSLLRNRIVFLGSEVKDENANALCAQMLLLNAEDPEADIY 70

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VT GMAIYDTMQ+I   ++T  MG AASMG  LL+AG  G R+ALP+A+IL
Sbjct: 71  LYINSPGGSVTGGMAIYDTMQWISNDVATVTMGMAASMGQFLLTAGTPGKRYALPHAKIL 130

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  G A++I  +A+ +   KR L+++   + G T E++ +  DRDH  +A EA 
Sbjct: 131 MHQPLGGVGGTATEIAINAKMLKDTKRELSQLNADHSGHTLEQILEDSDRDHWFTAQEAL 190

Query: 197 DWGVVDKV 204
           ++G++D V
Sbjct: 191 EYGLIDHV 198


>gi|307128583|ref|YP_003880613.1| ATP-dependent Clp protease, proteolytic subunit [Candidatus Sulcia
           muelleri CARI]
 gi|306483045|gb|ADM89915.1| ATP-dependent Clp protease, proteolytic subunit [Candidatus Sulcia
           muelleri CARI]
          Length = 217

 Score =  184 bits (467), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 84/206 (40%), Positives = 141/206 (68%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           +S++   +    +    + P ++E+        D++SRL+ +RI+F+   I+D +A ++ 
Sbjct: 12  ISYKKINRSYLNNYIQSMTPYIMEERKSNVFQMDVFSRLMMDRIIFLGTPIDDKIANIVQ 71

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFL++ +  K+I +YINSPGG V +G+ IYDTMQ +KP IST C G AASM ++LL 
Sbjct: 72  AQLLFLQSLDSNKDIQIYINSPGGSVYSGLGIYDTMQILKPEISTICTGIAASMAAILLC 131

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           +G+KG R  L ++R+L+HQP G   GQ+SD+E   ++I+K+K+ LN I  ++  + +E+V
Sbjct: 132 SGKKGKRSILKHSRVLIHQPIGYAKGQSSDMEITVREILKLKKELNNIISEHTNQPFEKV 191

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLM 206
           +K  DRD+ M++ EA ++G+VD++L+
Sbjct: 192 QKDSDRDYWMTSEEAKNYGIVDEILL 217


>gi|282880880|ref|ZP_06289573.1| Clp protease [Prevotella timonensis CRIS 5C-B1]
 gi|281305262|gb|EFA97329.1| Clp protease [Prevotella timonensis CRIS 5C-B1]
          Length = 221

 Score =  184 bits (467), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 86/191 (45%), Positives = 133/191 (69%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P ++E+        D++SRL+ +RI+F+  +I+D+ A  + AQLL+L++ +  K+IS+
Sbjct: 30  LNPYILEERQLNVTQMDVFSRLMMDRIIFLGTEIDDYTANTLQAQLLYLDSVDGGKDISI 89

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+ IYDTMQFI   ++T C G AASM ++LL AG++G R AL ++R+++
Sbjct: 90  YINSPGGSVTAGLGIYDTMQFITSDVATICTGMAASMAAVLLVAGQEGKRSALTHSRVMI 149

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I+K K+ L  I   +    YE+V +  DR++ M A +A +
Sbjct: 150 HQPLGGVQGQASDIEIEAKEIIKFKKELFTIIANHSHTPYEKVYRDSDRNYWMDAEQAKE 209

Query: 198 WGVVDKVLMSR 208
           +G++D VL+ +
Sbjct: 210 YGMIDTVLVRK 220


>gi|308177635|ref|YP_003917041.1| ATP-dependent Clp protease proteolytic subunit ClpP [Arthrobacter
           arilaitensis Re117]
 gi|307745098|emb|CBT76070.1| ATP-dependent Clp protease proteolytic subunit ClpP [Arthrobacter
           arilaitensis Re117]
          Length = 206

 Score =  184 bits (466), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 90/186 (48%), Positives = 122/186 (65%), Gaps = 1/186 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
            P +      G   Y IY+RLLKERI+++   + D  A  IC+QLL L AE+P+K+I LY
Sbjct: 7   TPTMAASEPAGRDDY-IYNRLLKERIIWLGSDVRDDNANAICSQLLLLSAEDPEKDIYLY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG +TAGMAIYDTM FI   + T   G AASMG  LLS+G  G RFA PNARIL+H
Sbjct: 66  INSPGGSITAGMAIYDTMNFIPNDVVTVATGLAASMGQFLLSSGTPGKRFATPNARILMH 125

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  G ASDI+  A+ I+ +K+ ++E+  +  G+T E++     RD   +A +A ++
Sbjct: 126 QPSGGIGGTASDIKIQAELIMHMKKVMSELTAEQTGQTVEQILIDNQRDKWFTAQDALEY 185

Query: 199 GVVDKV 204
           G  D++
Sbjct: 186 GFFDQI 191


>gi|329957343|ref|ZP_08297863.1| endopeptidase Clp [Bacteroides clarus YIT 12056]
 gi|328523056|gb|EGF50159.1| endopeptidase Clp [Bacteroides clarus YIT 12056]
          Length = 220

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 86/191 (45%), Positives = 132/191 (69%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P ++E+        D++SRL+ +RI+F+  QI+D+ A  + AQLL+L++ +P K+IS+
Sbjct: 30  LNPYILEERQLNVTQLDVFSRLMMDRIIFLGTQIDDYTANTLQAQLLYLDSVDPGKDISI 89

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+ IYDTMQFI   ++T C G AASM ++LL AG +G R AL ++R+++
Sbjct: 90  YINSPGGSVYAGLGIYDTMQFISSDVATICTGMAASMAAVLLVAGAEGKRSALTHSRVMI 149

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I K+K+ L  I   +   ++++V    DRD+ M+A EA +
Sbjct: 150 HQPMGGAQGQASDIEITAREIQKLKKELYTIIADHSHTSFDKVWADSDRDYWMTAQEAKE 209

Query: 198 WGVVDKVLMSR 208
           +G++D+V   +
Sbjct: 210 YGMIDQVYTKK 220


>gi|313836727|gb|EFS74441.1| Clp protease [Propionibacterium acnes HL037PA2]
 gi|314929867|gb|EFS93698.1| Clp protease [Propionibacterium acnes HL044PA1]
 gi|314972294|gb|EFT16391.1| Clp protease [Propionibacterium acnes HL037PA3]
          Length = 201

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 86/184 (46%), Positives = 124/184 (67%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           M   +T     + ++Y  LL+ RIVF+  +++D  A  +CAQ+L L AE+P+ +I LYIN
Sbjct: 4   MAGPETGGAGMTDNVYQSLLRNRIVFLGSEVKDENANALCAQMLLLNAEDPEADIYLYIN 63

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGG VT GMAIYDTMQ+I   ++T  MG AASMG  LL+AG  G R+ALP+A+IL+HQP
Sbjct: 64  SPGGSVTGGMAIYDTMQWISNDVATVTMGMAASMGQFLLTAGTPGKRYALPHAKILMHQP 123

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            GG  G A++I  +A+ +   KR L+++   + G T E++ +  DRDH  +A EA D+G+
Sbjct: 124 LGGVGGTATEIAINAKMLKDTKRELSQLNADHSGHTLEQILEDSDRDHWFTAQEALDYGL 183

Query: 201 VDKV 204
           +D V
Sbjct: 184 IDYV 187


>gi|167765438|ref|ZP_02437551.1| hypothetical protein BACSTE_03828 [Bacteroides stercoris ATCC
           43183]
 gi|167697066|gb|EDS13645.1| hypothetical protein BACSTE_03828 [Bacteroides stercoris ATCC
           43183]
          Length = 220

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 86/191 (45%), Positives = 132/191 (69%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P ++E+        D++SRL+ +RI+F+  QI+D+ A  + AQLL+L++ +P K+IS+
Sbjct: 30  LNPYILEERQLNVTQLDVFSRLMMDRIIFLGTQIDDYTANTLQAQLLYLDSVDPGKDISI 89

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+ IYDTMQFI   ++T C G AASM ++LL AG +G R AL ++R+++
Sbjct: 90  YINSPGGSVYAGLGIYDTMQFISSDVATICTGMAASMAAVLLVAGAEGKRSALTHSRVMI 149

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I K+K+ L  I   +   ++++V    DRD+ M+A EA +
Sbjct: 150 HQPMGGAQGQASDIEITAREIQKLKKELYTIIADHSHTSFDKVWADSDRDYWMTAQEAKE 209

Query: 198 WGVVDKVLMSR 208
           +G++D+V   +
Sbjct: 210 YGMIDQVYTKK 220


>gi|323343310|ref|ZP_08083537.1| ATP-dependent Clp protease, protease subunit [Prevotella oralis
           ATCC 33269]
 gi|323095129|gb|EFZ37703.1| ATP-dependent Clp protease, protease subunit [Prevotella oralis
           ATCC 33269]
          Length = 222

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 87/191 (45%), Positives = 130/191 (68%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P ++E+        D++SRL+ +RI+F+  +I+D+ A  + AQLL+L++ +  K+IS+
Sbjct: 31  LNPYILEERQLNVTQMDVFSRLMMDRIIFLGTEIDDYTANTLQAQLLYLDSADSGKDISI 90

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+ IYDTMQFI   ++T C G AASM ++LL AG  G R AL ++R+++
Sbjct: 91  YINSPGGSVTAGLGIYDTMQFISSDVATICTGMAASMAAVLLVAGTDGKRNALTHSRVMI 150

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I K K+ L  I   +    YE+V +  DR++ M+A EA +
Sbjct: 151 HQPLGGVQGQASDIEIEAKEIQKFKKELYTIIANHSHTPYEKVWQDADRNYWMTAEEAKE 210

Query: 198 WGVVDKVLMSR 208
           +G++D VL  +
Sbjct: 211 YGMIDAVLTRK 221


>gi|296270440|ref|YP_003653072.1| endopeptidase Clp [Thermobispora bispora DSM 43833]
 gi|296093227|gb|ADG89179.1| Endopeptidase Clp [Thermobispora bispora DSM 43833]
          Length = 215

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 92/191 (48%), Positives = 138/191 (72%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T+ G +  + Y++L ++RI+F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 15  VLPSFVERTSYGVKEMNPYNKLFEDRIIFLGVQIDDASANDVMAQLLTLESLDPDRDISI 74

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQF++P I T C+GQAAS  ++LL+ G  G RFALPNAR+L+
Sbjct: 75  YINSPGGSFTAMTAIYDTMQFVRPDIQTVCLGQAASAAAVLLAGGTPGKRFALPNARVLI 134

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP     GQ SDIE  A++I++++  L EI  K+ GK+ E++ K ++RD I++A EA +
Sbjct: 135 HQPYTEGGGQGSDIEIQAREILRMRSLLEEIIAKHTGKSPEQIRKDIERDKILTAQEAKE 194

Query: 198 WGVVDKVLMSR 208
           +G+VD ++ SR
Sbjct: 195 YGLVDDIIPSR 205


>gi|269955920|ref|YP_003325709.1| endopeptidase Clp [Xylanimonas cellulosilytica DSM 15894]
 gi|269304601|gb|ACZ30151.1| Endopeptidase Clp [Xylanimonas cellulosilytica DSM 15894]
          Length = 236

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 93/193 (48%), Positives = 142/193 (73%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++RI+F+  Q++D  A  + AQLL LE+++P ++I +
Sbjct: 36  VLPQFEERTAYGFKRQDPYTKLFEDRIIFLGVQVDDASADDVMAQLLVLESQDPDRDIMM 95

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  A+YDTMQ+IKP I T C+GQAAS  ++LL+AG+KG R+ALPNAR+L+
Sbjct: 96  YINSPGGSFTAMTALYDTMQYIKPQIQTVCLGQAASAAAVLLAAGQKGKRYALPNARVLI 155

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+  GG   QASDIE HA ++++++  L E    + G+T E+V++ ++RD I++A++A
Sbjct: 156 HQPAMEGGGYAQASDIEIHANELIRMREWLEETLASHSGRTPEQVKEDIERDKILTAAQA 215

Query: 196 CDWGVVDKVLMSR 208
            D+G+VD VL SR
Sbjct: 216 KDYGLVDLVLESR 228


>gi|183601398|ref|ZP_02962768.1| ATP-dependent Clp protease proteolytic subunit 2 [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219683455|ref|YP_002469838.1| ATP-dependent Clp protease proteolytic subunit 2 [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|241191102|ref|YP_002968496.1| ATP-dependent Clp protease proteolytic subunit 2 [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|241196508|ref|YP_002970063.1| ATP-dependent Clp protease proteolytic subunit 2 [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|183219004|gb|EDT89645.1| ATP-dependent Clp protease proteolytic subunit 2 [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219621105|gb|ACL29262.1| ATP-dependent Clp protease proteolytic subunit 2 [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|240249494|gb|ACS46434.1| ATP-dependent Clp protease proteolytic subunit 2 [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240251062|gb|ACS48001.1| ATP-dependent Clp protease proteolytic subunit 2 [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|289178846|gb|ADC86092.1| ClpP [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295794091|gb|ADG33626.1| ATP-dependent Clp protease proteolytic subunit 2 [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 204

 Score =  183 bits (465), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 84/171 (49%), Positives = 123/171 (71%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I++RLLK+RI+++  +++D MA  ICAQ+L L AE+P+ +I LYINSPGG +TAGMAIYD
Sbjct: 23  IFNRLLKDRIIWLGEEVKDDMANRICAQMLMLAAEDPKSDIWLYINSPGGSITAGMAIYD 82

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ I+P ++T  +G  ASMG  LLS+G KG RF   +AR+L+HQPSGG  G  +D+  +
Sbjct: 83  TMQLIEPDVATVGIGMCASMGQFLLSSGTKGKRFLTSHARVLMHQPSGGIGGTTTDVRIN 142

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+ I+ +K+ L E+  +  G T EE+ +  + DH  +A EA ++G VDK++
Sbjct: 143 AELIMDMKKTLGELTAEQTGHTIEEIYRDNEYDHWFTAEEALEYGFVDKLV 193


>gi|224535961|ref|ZP_03676500.1| hypothetical protein BACCELL_00825 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522416|gb|EEF91521.1| hypothetical protein BACCELL_00825 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 220

 Score =  183 bits (465), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 87/191 (45%), Positives = 132/191 (69%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P ++E+        D++SRL+ +RI+F+  Q++D+ A  + AQLL+L++  P K+IS+
Sbjct: 30  LNPYILEERQLNVTQLDVFSRLMMDRIIFLGTQVDDYTANTLQAQLLYLDSVEPGKDISI 89

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+ IYDTMQFI   ++T C G AASM ++LL AG +G R AL ++R+++
Sbjct: 90  YINSPGGSVYAGLGIYDTMQFITSDVATICTGMAASMAAVLLVAGAEGKRSALTHSRVMI 149

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I K+K+ L  I   +    +++V    DRD+ M+A EA +
Sbjct: 150 HQPMGGAQGQASDIEITAREIQKLKKELYTIIADHSHTPFDKVWADSDRDYWMTAQEAKE 209

Query: 198 WGVVDKVLMSR 208
           +G+VD+VL+ +
Sbjct: 210 YGMVDEVLIKK 220


>gi|326505348|dbj|BAK03061.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 284

 Score =  183 bits (465), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 89/193 (46%), Positives = 131/193 (67%), Gaps = 6/193 (3%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G  PMV+E      R   + S+L + RI+   G +ED MA +I AQLL+L+A +P K+I 
Sbjct: 88  GPSPMVME------RFQSVVSQLFQHRIIRCGGPVEDDMANVIVAQLLYLDAVDPNKDII 141

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+NSPGG VTAGMAI+DTM+ I+P +ST C+G AASMG+ LLS G KG R++LPN+RI+
Sbjct: 142 MYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCIGLAASMGAFLLSGGTKGKRYSLPNSRIM 201

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQ +D+E  A +++  K  LN     + G+  +++    DRD  MSA EA 
Sbjct: 202 IHQPLGGAQGQETDLEIQANEMLHHKANLNGYLAYHTGQPLDKINVDTDRDFFMSAKEAK 261

Query: 197 DWGVVDKVLMSRI 209
           ++G++D V+++ +
Sbjct: 262 EYGLIDGVIVNPL 274


>gi|330465579|ref|YP_004403322.1| endopeptidase Clp [Verrucosispora maris AB-18-032]
 gi|328808550|gb|AEB42722.1| endopeptidase Clp [Verrucosispora maris AB-18-032]
          Length = 195

 Score =  183 bits (465), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 84/185 (45%), Positives = 125/185 (67%), Gaps = 2/185 (1%)

Query: 29  GERSY--DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVV 86
           G+R++   ++ RLL+ERIVF+  ++ D  A  I AQ+L L AE+  ++I LYINSPGG V
Sbjct: 8   GQRTFGDQVFERLLRERIVFLGSEVTDEAANRITAQILLLAAEDSTRDIRLYINSPGGSV 67

Query: 87  TAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG 146
           +AGMA+YDTM+F+   +ST  +G A SMG  LL AG  G R+ALP+ RIL+HQPSGG  G
Sbjct: 68  SAGMAVYDTMRFVPNDVSTLALGLAGSMGQFLLCAGTAGKRYALPHTRILMHQPSGGMGG 127

Query: 147 QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
            ASDI   A++++ +KR + E+  ++ G+   E+++  DRD   +A +A  +G++D VL 
Sbjct: 128 TASDITIQAENMLHVKRTMQELIARHSGRDLTEIQQDWDRDRWFTAEQARTYGLIDHVLT 187

Query: 207 SRIDI 211
           +   I
Sbjct: 188 TTTQI 192


>gi|308803947|ref|XP_003079286.1| COG0740: Protease subunit of ATP-dependent Clp proteases (ISS)
           [Ostreococcus tauri]
 gi|116057741|emb|CAL53944.1| COG0740: Protease subunit of ATP-dependent Clp proteases (ISS)
           [Ostreococcus tauri]
          Length = 306

 Score =  183 bits (465), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 87/172 (50%), Positives = 119/172 (69%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D +  LLK RIVF+  Q++D  A  + +QLL L+ ++P KEI L+INSPGG VTAGM IY
Sbjct: 85  DPFGALLKNRIVFLGHQVDDFNADAVISQLLLLDQQDPTKEIKLFINSPGGSVTAGMGIY 144

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D MQF + P+ST C+G AASMG+ LL++GEKG R ++PNARI++HQP GG  G A DIE 
Sbjct: 145 DAMQFCRAPVSTVCLGLAASMGAFLLASGEKGRRMSMPNARIMIHQPLGGAQGSAVDIEI 204

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            A++I+  K  LN +   + G+  E +++  DRD  MS  EA  +GV+D V+
Sbjct: 205 QAKEIMYHKANLNRLMAFHTGQKVETIDEDTDRDRYMSPLEAKQYGVIDIVI 256


>gi|118471482|ref|YP_888936.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           smegmatis str. MC2 155]
 gi|118172769|gb|ABK73665.1| Clp protease [Mycobacterium smegmatis str. MC2 155]
          Length = 203

 Score =  183 bits (464), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 86/173 (49%), Positives = 118/173 (68%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL ERI+F+  Q++D +A  +CAQ+L L AE+P K+I LYINSPGG ++AGMAIYD
Sbjct: 17  VYERLLAERIIFLGSQVDDDIANRLCAQILLLSAEDPTKDIHLYINSPGGSISAGMAIYD 76

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM      I+T+ MG AASMG  LL+AG KG R+ALP+ARIL+HQP GG +G A+DI   
Sbjct: 77  TMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQ 136

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+    IK+ +  +  +  G+  E +E   DRD   +A EA ++G VD ++ S
Sbjct: 137 AEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAQEALEYGFVDHIITS 189


>gi|198276174|ref|ZP_03208705.1| hypothetical protein BACPLE_02363 [Bacteroides plebeius DSM 17135]
 gi|198270986|gb|EDY95256.1| hypothetical protein BACPLE_02363 [Bacteroides plebeius DSM 17135]
          Length = 224

 Score =  183 bits (464), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 87/188 (46%), Positives = 132/188 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P ++E+        D++SRL+ +RI+F+  QI+D+ A  + AQLL+L++ +  K+IS+
Sbjct: 31  LNPYILEERQLNVTQLDVFSRLMMDRIIFLGTQIDDYTANTLQAQLLYLDSVDSGKDISI 90

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+ IYDTMQFI   ++T C G AASM ++LL AG++G R AL ++R+++
Sbjct: 91  YINSPGGSVYAGLGIYDTMQFISSDVATICTGMAASMAAVLLVAGKEGKRSALTHSRVMI 150

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I K+K+ L  I   +    +++V    DRD+ M+ASEA +
Sbjct: 151 HQPMGGAQGQASDIEITAREIQKLKKELYTIIADHSHTDFDKVWADSDRDYWMTASEAKE 210

Query: 198 WGVVDKVL 205
           +G++D+VL
Sbjct: 211 YGMIDEVL 218


>gi|325000576|ref|ZP_08121688.1| ATP-dependent Clp protease proteolytic subunit [Pseudonocardia sp.
           P1]
          Length = 227

 Score =  183 bits (464), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 90/190 (47%), Positives = 125/190 (65%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG  P +   T+    S  +Y RLL++RI+ +  Q++  ++  I AQ+L L AE+P+K+I
Sbjct: 24  LGSGPQMRAATHSMSLSDSVYERLLQQRIIVLGQQVDAEISNRIAAQMLLLAAEDPEKDI 83

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VT GMA++DTM  I   +ST  MG AASMG  LLSAG  G RFALP+ARI
Sbjct: 84  ELYINSPGGSVTDGMAVFDTMNLIPCDVSTTAMGMAASMGQFLLSAGTPGKRFALPHARI 143

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  G  +DI   A+ + K KR + E+  ++ G++ E +E+  DRD   +A EA
Sbjct: 144 MMHQPSGGIGGTEADITILAEQMRKTKREMAELIAQHTGQSLETIERDSDRDRWFTAEEA 203

Query: 196 CDWGVVDKVL 205
            D+G VD V+
Sbjct: 204 KDYGFVDHVV 213


>gi|320010820|gb|ADW05670.1| Endopeptidase Clp [Streptomyces flavogriseus ATCC 33331]
          Length = 205

 Score =  183 bits (464), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 90/171 (52%), Positives = 118/171 (69%), Gaps = 1/171 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +YSRLL ERI+F+  Q++D +A  I AQLL L AE P K+I LYINSPGG VTAGMA+YD
Sbjct: 22  VYSRLLGERIIFLGQQVDDDIANKITAQLLLLAAE-PDKDIYLYINSPGGSVTAGMAVYD 80

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ+I   + T  MG AASMG  LL+ G  G RFALPN  IL+HQ S G  G ASDI+  
Sbjct: 81  TMQYIPNDVVTIGMGMAASMGQFLLTGGTAGKRFALPNTDILMHQGSAGIGGTASDIKIQ 140

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           AQ +++ K R+ EI   + G+T E + +  DRD   +A EA D+G++D+++
Sbjct: 141 AQYLLRTKTRMAEITAHHSGQTVETIIRDGDRDRWYTAEEAKDYGLIDEII 191


>gi|284990114|ref|YP_003408668.1| endopeptidase Clp [Geodermatophilus obscurus DSM 43160]
 gi|284063359|gb|ADB74297.1| Endopeptidase Clp [Geodermatophilus obscurus DSM 43160]
          Length = 208

 Score =  183 bits (464), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 89/191 (46%), Positives = 138/191 (72%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T+ G +  + Y++L +ERI+F+  QI+D  A  + AQL+ LE+ +P ++I++
Sbjct: 11  ILPSFVERTSYGMKESNPYNKLFEERIIFLGVQIDDASANDVMAQLITLESADPDRDITI 70

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTM F++P I T CMGQAAS  ++LL+AG  G R ALP +R+L+
Sbjct: 71  YINSPGGSFTSLMAIYDTMMFVRPDIQTVCMGQAASAAAVLLAAGTPGKRLALPYSRVLI 130

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSG   GQ SD+E HA +I +++ ++ EI  ++ G++ ++V   +DRD I++A EA +
Sbjct: 131 HQPSGEAGGQVSDLEIHAAEIQRVRAQMEEILARHTGRSVDQVRADIDRDKILTAEEAKE 190

Query: 198 WGVVDKVLMSR 208
           +G+VD V+ SR
Sbjct: 191 YGIVDAVIQSR 201


>gi|240170932|ref|ZP_04749591.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           kansasii ATCC 12478]
          Length = 202

 Score =  183 bits (464), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 85/171 (49%), Positives = 117/171 (68%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL ERI+F+  ++ D +A  +CAQ+L L AE+P K+ISLYINSPGG ++AGMAIYD
Sbjct: 20  VYERLLSERIIFLGSEVNDDVANRLCAQILLLAAEDPTKDISLYINSPGGSISAGMAIYD 79

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM      I+T+ MG AASMG  LL+AG KG R+ALP+ARIL+HQP GG +G A+DI   
Sbjct: 80  TMTLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQ 139

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+    IK+ +  +  +  G+  E +E   DRD   +A EA ++G VD ++
Sbjct: 140 AEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAPEALEYGFVDHII 190


>gi|182438716|ref|YP_001826435.1| putative ATP-dependent Clp protease proteolytic subunit 1
           [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|326779365|ref|ZP_08238630.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces cf.
           griseus XylebKG-1]
 gi|178467232|dbj|BAG21752.1| putative ATP-dependent Clp protease proteolytic subunit 1
           [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|326659698|gb|EGE44544.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces cf.
           griseus XylebKG-1]
          Length = 205

 Score =  182 bits (463), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 90/171 (52%), Positives = 118/171 (69%), Gaps = 1/171 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +YSRLL ERI+F+  Q++D +A  I AQLL L AE P K+I LYINSPGG VTAGMA+YD
Sbjct: 22  VYSRLLGERIIFLGQQVDDDIANKITAQLLLLAAE-PDKDIYLYINSPGGSVTAGMAVYD 80

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ+I   + T  MG AASMG  LL+ G  G RFALPN  IL+HQ S G  G ASDI+  
Sbjct: 81  TMQYIPNDVVTIGMGMAASMGQFLLTGGAAGKRFALPNTDILMHQGSAGIGGTASDIKIQ 140

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           AQ +++ K R+ EI   + G+T E + +  DRD   +A EA D+G++D+++
Sbjct: 141 AQYLLRTKTRMAEITAHHSGQTVETIIRDGDRDRWYTAEEAKDYGLIDEII 191


>gi|271968524|ref|YP_003342720.1| endopeptidase Clp [Streptosporangium roseum DSM 43021]
 gi|270511699|gb|ACZ89977.1| Endopeptidase Clp [Streptosporangium roseum DSM 43021]
          Length = 214

 Score =  182 bits (463), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 91/191 (47%), Positives = 137/191 (71%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T+ G +  + Y++L ++RI+F+  Q++D  A  + AQLL LE+ +P ++IS+
Sbjct: 15  VLPSFVERTSYGVKEMNPYNKLFEDRIIFLGVQVDDASANDVMAQLLTLESLDPDRDISV 74

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA MAIYDTMQF++P I T C+GQAAS  ++LL+ G  G RFALPNAR+L+
Sbjct: 75  YINSPGGSFTAMMAIYDTMQFVRPEIQTVCLGQAASAAAILLAGGTAGKRFALPNARMLI 134

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPS    GQ SDIE  A++I++++ ++  I  ++ GKT  EV K ++RD I+ A EA  
Sbjct: 135 HQPSTEGGGQGSDIEIQAREILRMRSQMETILARHSGKTPAEVRKDIERDKILDAEEAKA 194

Query: 198 WGVVDKVLMSR 208
           +G++D ++ SR
Sbjct: 195 YGLIDDIIPSR 205


>gi|256824761|ref|YP_003148721.1| ATP-dependent Clp protease proteolytic subunit ClpP [Kytococcus
           sedentarius DSM 20547]
 gi|256688154|gb|ACV05956.1| ATP-dependent Clp protease proteolytic subunit ClpP [Kytococcus
           sedentarius DSM 20547]
          Length = 240

 Score =  182 bits (463), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 95/192 (49%), Positives = 139/192 (72%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++RI+F   QI+D  A  I AQLL LE+++P +++ +
Sbjct: 43  VLPQFEERTAYGTKRQDPYTKLFEDRIIFCGVQIDDASADDIIAQLLVLESQDPDRDVLM 102

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQFI+P + TF +GQAAS G++LL+AG  G RFALPN+RIL+
Sbjct: 103 YINSPGGSFTAMTAIYDTMQFIRPDVQTFVLGQAASAGAVLLAAGAPGKRFALPNSRILI 162

Query: 138 HQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+  G  G ASD+E  A ++++++  L E + K+ G+T E+V K ++RD I+SA+EA 
Sbjct: 163 HQPAMEGMGGMASDLEITANEVLRMRTWLEETWAKHSGQTPEKVRKDIERDKILSAAEAQ 222

Query: 197 DWGVVDKVLMSR 208
           ++G+VD VL SR
Sbjct: 223 EYGLVDAVLPSR 234


>gi|161833700|ref|YP_001597896.1| ATP-dependent Clp protease, proteolytic subunit [Candidatus Sulcia
           muelleri GWSS]
 gi|293977810|ref|YP_003543240.1| protease subunit of ATp-dependent Clp protease [Candidatus Sulcia
           muelleri DMIN]
 gi|152206190|gb|ABS30500.1| ATP-dependent Clp protease, proteolytic subunit [Candidatus Sulcia
           muelleri GWSS]
 gi|292667741|gb|ADE35376.1| Protease subunit of ATP-dependent Clp protease [Candidatus Sulcia
           muelleri DMIN]
          Length = 219

 Score =  182 bits (463), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 84/189 (44%), Positives = 134/189 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           + P ++E+        D++SRL+ +RI+F+   I+D +A +I AQLLFL++ +  K I +
Sbjct: 31  MTPYIMEERKYNVSQMDVFSRLMMDRIIFLGTPIDDQIANIIQAQLLFLQSLDSNKGIQI 90

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V +G+ IYDTMQ +KP IST C G AASM ++LL +G+KG R  L ++R+L+
Sbjct: 91  YINSPGGSVYSGLGIYDTMQILKPEISTICTGIAASMAAILLCSGKKGKRSILKHSRVLI 150

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP G   GQ+SD+E   ++I+K+K  LN+I  ++  + +E+V+K  DRD+ M++ EA +
Sbjct: 151 HQPIGYAKGQSSDMEITVREILKLKEELNKIISEHTNQPFEKVQKDSDRDYWMTSEEAKN 210

Query: 198 WGVVDKVLM 206
           +G+VD++L+
Sbjct: 211 YGIVDEILL 219


>gi|302534406|ref|ZP_07286748.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sp. C]
 gi|302443301|gb|EFL15117.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sp. C]
          Length = 205

 Score =  182 bits (462), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 89/171 (52%), Positives = 120/171 (70%), Gaps = 1/171 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y+RLL ERI+F+  Q++D +A  I AQLL L AE P+K+I LYINSPGG VTAGMA+YD
Sbjct: 22  VYNRLLGERIIFLGQQVDDDIANKITAQLLLLAAE-PEKDIYLYINSPGGSVTAGMAVYD 80

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ+I   + T  MG AASMG  LL+ G  G RFALPN  IL+HQ S G  G ASDI+  
Sbjct: 81  TMQYIPNDVVTIGMGMAASMGQFLLTGGTPGKRFALPNTDILMHQGSAGIGGTASDIKIQ 140

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           AQ +++ K+R+ EI   + G+T E + +  DRD   +A EA D+G++D+++
Sbjct: 141 AQYLLRTKQRMAEITAHHSGQTVEAIIRDGDRDRWFTAEEAKDYGLIDEII 191


>gi|256375240|ref|YP_003098900.1| endopeptidase Clp [Actinosynnema mirum DSM 43827]
 gi|255919543|gb|ACU35054.1| Endopeptidase Clp [Actinosynnema mirum DSM 43827]
          Length = 205

 Score =  182 bits (462), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 82/171 (47%), Positives = 114/171 (66%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           ++ +LL+ RIVF+  ++ D +A  + AQLL L AE+P+ +I  YINSPGG VTAGMAIYD
Sbjct: 24  VFEQLLRSRIVFLGSEVNDEVANRLTAQLLLLSAEDPKSDIKFYINSPGGSVTAGMAIYD 83

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ I+P + T+ MG  ASMG  LLS+G  G R+ LP+ R+L+HQPS G  G A+DI   
Sbjct: 84  TMQLIEPDVQTWGMGMVASMGQFLLSSGTPGKRYLLPHTRVLMHQPSAGVGGTATDIAIQ 143

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+     KR++ EI  +  G+T+E +    DRD   +A EA ++G VD +L
Sbjct: 144 AEAFAYTKRQMAEITAQQTGQTFERITADADRDRWFTAEEALEYGFVDHIL 194


>gi|218128447|ref|ZP_03457251.1| hypothetical protein BACEGG_00015 [Bacteroides eggerthii DSM 20697]
 gi|317475727|ref|ZP_07934986.1| Clp protease [Bacteroides eggerthii 1_2_48FAA]
 gi|217989338|gb|EEC55651.1| hypothetical protein BACEGG_00015 [Bacteroides eggerthii DSM 20697]
 gi|316908110|gb|EFV29805.1| Clp protease [Bacteroides eggerthii 1_2_48FAA]
          Length = 220

 Score =  182 bits (462), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 86/191 (45%), Positives = 131/191 (68%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P ++E+        D++SRL+ +RI+F+  QI+D+ A  + AQLL+L++ +P K+IS+
Sbjct: 30  LNPYILEERQLNVTQLDVFSRLMMDRIIFLGTQIDDYTANTLQAQLLYLDSVDPGKDISI 89

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+ IYDTMQFI   ++T C G AASM ++LL AG +G R AL ++R+++
Sbjct: 90  YINSPGGSVYAGLGIYDTMQFISSDVATICTGMAASMAAVLLVAGAEGKRSALTHSRVMI 149

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I K+K+ L  I   +    +++V    DRD+ M+A EA +
Sbjct: 150 HQPMGGAQGQASDIEITAREIQKLKKELYTIIADHSHTPFDKVWADSDRDYWMTAQEAKE 209

Query: 198 WGVVDKVLMSR 208
           +G++D+V   +
Sbjct: 210 YGMIDQVYTKK 220


>gi|311900309|dbj|BAJ32717.1| putative ATP-dependent Clp protease proteolytic subunit
           [Kitasatospora setae KM-6054]
          Length = 212

 Score =  182 bits (462), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 89/178 (50%), Positives = 119/178 (66%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           LL  RIV +  Q++D  A  +CAQLL L AE+P+ +ISLYINSPGG VTAG+AIYDTM+ 
Sbjct: 29  LLARRIVLLGTQVDDVSANRVCAQLLLLSAEDPRTDISLYINSPGGSVTAGLAIYDTMRL 88

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           I   +ST  MG AASMG  LL+ G  G RFALPNARI++HQPS G  G ASDIE  A+++
Sbjct: 89  IPNDVSTLAMGFAASMGQFLLTVGAPGKRFALPNARIMMHQPSAGIGGTASDIEIQAENL 148

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
              KR +  I   + G++ E + +  DRD   +A +A ++G+VD+VL S  ++   S 
Sbjct: 149 EYTKRAIERITAAHTGQSEETIARDGDRDRWFTAEQAREYGMVDRVLESLAEVGSASS 206


>gi|255070963|ref|XP_002507563.1| endopeptidase clp chloroplast precursor [Micromonas sp. RCC299]
 gi|226522838|gb|ACO68821.1| endopeptidase clp chloroplast precursor [Micromonas sp. RCC299]
          Length = 270

 Score =  182 bits (462), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 83/172 (48%), Positives = 124/172 (72%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D +  LL+ERIVF+  Q++D  A  + +QLL L+A++P+K+I L+INSPGG VTAGM IY
Sbjct: 65  DPFGLLLRERIVFLGNQVDDFTADAVISQLLLLDAQDPKKDIKLFINSPGGSVTAGMGIY 124

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D MQ  +  +ST CMG AASMG+ LL++G +G R ++PNARI++HQP GG SGQA DIE 
Sbjct: 125 DAMQMCRADVSTVCMGLAASMGAFLLTSGARGKRLSMPNARIMIHQPLGGASGQAVDIEI 184

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            A++I+  K  LN +   + G+  +++++  DRD  MS  EA ++G++D+++
Sbjct: 185 QAKEIMYHKANLNRLMAFHTGQDVKQIDEDTDRDRYMSPLEAKNYGIIDEII 236


>gi|291298892|ref|YP_003510170.1| endopeptidase Clp [Stackebrandtia nassauensis DSM 44728]
 gi|290568112|gb|ADD41077.1| Endopeptidase Clp [Stackebrandtia nassauensis DSM 44728]
          Length = 207

 Score =  182 bits (462), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 85/171 (49%), Positives = 120/171 (70%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +++RLLKERIVF+  ++   +A  + AQLL L A++P+++I+LYINSPGG V  GMAIYD
Sbjct: 23  VFNRLLKERIVFMGTEVNSQVANRVSAQLLLLAADDPERDINLYINSPGGSVYDGMAIYD 82

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQFI   ++T  MG AASMG LLL AG  G R+ALP+ARI++HQPSGG  G ASD+   
Sbjct: 83  TMQFISNDVATIAMGMAASMGQLLLCAGTPGKRYALPHARIMMHQPSGGIGGTASDVAIL 142

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+ +   K+   E    + G+T +E+E+  DRD   +A EA ++G +D+V+
Sbjct: 143 AEQMAYTKKMFQERVSTHTGRTLDEIERDSDRDRWFTAEEAKEYGFIDQVI 193


>gi|224007247|ref|XP_002292583.1| catalytic subunit of clp protease [Thalassiosira pseudonana
           CCMP1335]
 gi|220971445|gb|EED89779.1| catalytic subunit of clp protease [Thalassiosira pseudonana
           CCMP1335]
          Length = 201

 Score =  182 bits (462), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 86/172 (50%), Positives = 122/172 (70%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           DIY+RL +ERI+F+  +I+D +A  I   +L+L+ E+  K I LYINSPGG V +G+AI+
Sbjct: 22  DIYNRLYRERIIFLGSEIDDELANQIIGVMLYLDEEDSTKPIYLYINSPGGSVISGLAIF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D MQ IK  + T  +G AASM S +LSAG KG R ALP++RI++HQP GG  GQA DI+ 
Sbjct: 82  DAMQLIKSEVITINLGLAASMASFILSAGSKGKRLALPSSRIMIHQPMGGAQGQAQDIKV 141

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            A  I++I+  L ++Y    G+T E++ K LDRD+ MSA EA ++G++D+VL
Sbjct: 142 EAAQIMRIRDNLVKMYSMFTGQTTEQITKDLDRDNFMSAQEALEYGLIDRVL 193


>gi|297563813|ref|YP_003682786.1| Endopeptidase Clp [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
 gi|296848262|gb|ADH70280.1| Endopeptidase Clp [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
          Length = 207

 Score =  182 bits (462), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 92/190 (48%), Positives = 139/190 (73%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VPMVVE+T  GERS+D++SRLL ERI+F+   I+D +A ++ AQ+L L+ E+ + +I LY
Sbjct: 7   VPMVVERTPHGERSFDVFSRLLSERIIFLGTPIDDDVANVVMAQMLHLDYESSETDIQLY 66

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TA  AIYDTM+F++  ++T CMGQAAS  ++LL+AG  G R AL +AR+LLH
Sbjct: 67  INSPGGSNTALTAIYDTMRFVRADVATVCMGQAASAAAVLLAAGTAGKRTALEHARVLLH 126

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSG   G A+D+E  A++I++++ ++ EI  ++ G+T E +    DRD I +A +A ++
Sbjct: 127 QPSGEGQGVAADLEIQAEEILRVRSQVEEILARHTGQTQERLRADTDRDKIFTAQQAKEY 186

Query: 199 GVVDKVLMSR 208
           G+VD ++ +R
Sbjct: 187 GLVDGIITTR 196


>gi|329937608|ref|ZP_08287127.1| ATP-dependent Clp protease proteolytic subunit 1 [Streptomyces
           griseoaurantiacus M045]
 gi|329303007|gb|EGG46895.1| ATP-dependent Clp protease proteolytic subunit 1 [Streptomyces
           griseoaurantiacus M045]
          Length = 212

 Score =  182 bits (462), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 91/197 (46%), Positives = 127/197 (64%), Gaps = 1/197 (0%)

Query: 16  LGLVPMVVEQTNRGERSYD-IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
           L L P   E      R  D + ++LL +RIVF+  Q+++  A  ICAQLL L AE+P+ +
Sbjct: 5   LTLAPRAAEGDTPPSRFDDQLAAQLLNQRIVFLGTQVDEVSANRICAQLLLLSAEDPRTD 64

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I LYINSPGG VTAG+AIYDTM+ I   +ST  MG AASMG  LL+ G  G R ALPNAR
Sbjct: 65  IGLYINSPGGSVTAGLAIYDTMRLIPNDVSTLVMGFAASMGQFLLTVGAPGKRLALPNAR 124

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQPS G  G  +DIE  A+++   K+ +  I  ++ G++ E + +  DRD   +A +
Sbjct: 125 IMMHQPSAGIGGTTADIEIQAENLAFTKKAIERITAEHTGQSEETISRDGDRDRWFTAEQ 184

Query: 195 ACDWGVVDKVLMSRIDI 211
           A D+G+VD+V+ S  D+
Sbjct: 185 ARDYGIVDRVVESLADV 201


>gi|254382770|ref|ZP_04998127.1| ATP-dependent Clp protease proteolytic subunit 1 [Streptomyces sp.
           Mg1]
 gi|194341672|gb|EDX22638.1| ATP-dependent Clp protease proteolytic subunit 1 [Streptomyces sp.
           Mg1]
          Length = 227

 Score =  182 bits (462), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 89/171 (52%), Positives = 121/171 (70%), Gaps = 1/171 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y+RLL ERI+F+  Q++D +A  I AQLL L AE P+K+I LYINSPGG VTAGMA+YD
Sbjct: 44  VYNRLLGERIIFLGQQVDDDIANKITAQLLLLAAE-PEKDIYLYINSPGGSVTAGMAVYD 102

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ+I   + T  MG AASMG  LL+ G KG RFALPN  IL+HQ S G  G ASDI+  
Sbjct: 103 TMQYIPNDVVTIGMGMAASMGQFLLTGGAKGKRFALPNTDILMHQGSAGIGGTASDIKIQ 162

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           AQ +++ K+R+ EI   + G+T E + +  DRD   ++ EA D+G++D+++
Sbjct: 163 AQYLLRTKQRMAEITAFHSGQTVEAIIRDGDRDRWFTSEEAKDYGLIDEII 213


>gi|289426380|ref|ZP_06428123.1| Clp protease [Propionibacterium acnes SK187]
 gi|289153108|gb|EFD01826.1| Clp protease [Propionibacterium acnes SK187]
          Length = 198

 Score =  182 bits (462), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 85/184 (46%), Positives = 124/184 (67%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           M   +T     + ++Y  LL+ RIVF+  +++D  A  +CAQ+L L AE+P+ +I LYIN
Sbjct: 1   MAGPETGGAGMTDNVYQSLLRNRIVFLGSEVKDENANALCAQMLLLNAEDPEADIYLYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGG VT GMAIYDTMQ+I   ++T  MG AASMG  LL+AG  G R+ALP+A+IL+HQP
Sbjct: 61  SPGGSVTGGMAIYDTMQWISNDVATVTMGMAASMGQFLLTAGTPGKRYALPHAKILMHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            GG  G A++I  +A+ +   KR L+++   + G T E++ +  DRDH  +A EA ++G+
Sbjct: 121 LGGVGGTATEIAINAKMLKDTKRELSQLNADHSGHTLEQILEDSDRDHWFTAQEALEYGL 180

Query: 201 VDKV 204
           +D V
Sbjct: 181 IDHV 184


>gi|289428692|ref|ZP_06430375.1| Clp protease [Propionibacterium acnes J165]
 gi|295131122|ref|YP_003581785.1| Clp protease [Propionibacterium acnes SK137]
 gi|289158090|gb|EFD06310.1| Clp protease [Propionibacterium acnes J165]
 gi|291375267|gb|ADD99121.1| Clp protease [Propionibacterium acnes SK137]
 gi|313763508|gb|EFS34872.1| Clp protease [Propionibacterium acnes HL013PA1]
 gi|313773445|gb|EFS39411.1| Clp protease [Propionibacterium acnes HL074PA1]
 gi|313793897|gb|EFS41921.1| Clp protease [Propionibacterium acnes HL110PA1]
 gi|313801288|gb|EFS42539.1| Clp protease [Propionibacterium acnes HL110PA2]
 gi|313808033|gb|EFS46514.1| Clp protease [Propionibacterium acnes HL087PA2]
 gi|313811498|gb|EFS49212.1| Clp protease [Propionibacterium acnes HL083PA1]
 gi|313813442|gb|EFS51156.1| Clp protease [Propionibacterium acnes HL025PA1]
 gi|313816690|gb|EFS54404.1| Clp protease [Propionibacterium acnes HL059PA1]
 gi|313819599|gb|EFS57313.1| Clp protease [Propionibacterium acnes HL046PA2]
 gi|313822076|gb|EFS59790.1| Clp protease [Propionibacterium acnes HL036PA1]
 gi|313823690|gb|EFS61404.1| Clp protease [Propionibacterium acnes HL036PA2]
 gi|313826014|gb|EFS63728.1| Clp protease [Propionibacterium acnes HL063PA1]
 gi|313829483|gb|EFS67197.1| Clp protease [Propionibacterium acnes HL063PA2]
 gi|313831239|gb|EFS68953.1| Clp protease [Propionibacterium acnes HL007PA1]
 gi|313834851|gb|EFS72565.1| Clp protease [Propionibacterium acnes HL056PA1]
 gi|313839989|gb|EFS77703.1| Clp protease [Propionibacterium acnes HL086PA1]
 gi|314914807|gb|EFS78638.1| Clp protease [Propionibacterium acnes HL005PA4]
 gi|314919377|gb|EFS83208.1| Clp protease [Propionibacterium acnes HL050PA1]
 gi|314920715|gb|EFS84546.1| Clp protease [Propionibacterium acnes HL050PA3]
 gi|314923825|gb|EFS87656.1| Clp protease [Propionibacterium acnes HL001PA1]
 gi|314924726|gb|EFS88557.1| Clp protease [Propionibacterium acnes HL036PA3]
 gi|314930595|gb|EFS94426.1| Clp protease [Propionibacterium acnes HL067PA1]
 gi|314954450|gb|EFS98856.1| Clp protease [Propionibacterium acnes HL027PA1]
 gi|314957523|gb|EFT01626.1| Clp protease [Propionibacterium acnes HL002PA1]
 gi|314961995|gb|EFT06096.1| Clp protease [Propionibacterium acnes HL002PA2]
 gi|314963748|gb|EFT07848.1| Clp protease [Propionibacterium acnes HL082PA1]
 gi|314966160|gb|EFT10259.1| Clp protease [Propionibacterium acnes HL082PA2]
 gi|314968425|gb|EFT12523.1| Clp protease [Propionibacterium acnes HL037PA1]
 gi|314976595|gb|EFT20690.1| Clp protease [Propionibacterium acnes HL045PA1]
 gi|314978950|gb|EFT23044.1| Clp protease [Propionibacterium acnes HL072PA2]
 gi|314982025|gb|EFT26118.1| Clp protease [Propionibacterium acnes HL110PA3]
 gi|314984414|gb|EFT28506.1| Clp protease [Propionibacterium acnes HL005PA1]
 gi|314986607|gb|EFT30699.1| Clp protease [Propionibacterium acnes HL005PA2]
 gi|314990964|gb|EFT35055.1| Clp protease [Propionibacterium acnes HL005PA3]
 gi|315079596|gb|EFT51589.1| Clp protease [Propionibacterium acnes HL053PA2]
 gi|315081175|gb|EFT53151.1| Clp protease [Propionibacterium acnes HL078PA1]
 gi|315083637|gb|EFT55613.1| Clp protease [Propionibacterium acnes HL027PA2]
 gi|315087057|gb|EFT59033.1| Clp protease [Propionibacterium acnes HL002PA3]
 gi|315089232|gb|EFT61208.1| Clp protease [Propionibacterium acnes HL072PA1]
 gi|315090839|gb|EFT62815.1| Clp protease [Propionibacterium acnes HL110PA4]
 gi|315095051|gb|EFT67027.1| Clp protease [Propionibacterium acnes HL060PA1]
 gi|315095254|gb|EFT67230.1| Clp protease [Propionibacterium acnes HL038PA1]
 gi|315099136|gb|EFT71112.1| Clp protease [Propionibacterium acnes HL059PA2]
 gi|315100381|gb|EFT72357.1| Clp protease [Propionibacterium acnes HL046PA1]
 gi|315104284|gb|EFT76260.1| Clp protease [Propionibacterium acnes HL050PA2]
 gi|315106804|gb|EFT78780.1| Clp protease [Propionibacterium acnes HL030PA1]
 gi|315108933|gb|EFT80909.1| Clp protease [Propionibacterium acnes HL030PA2]
 gi|327328170|gb|EGE69939.1| Clp protease [Propionibacterium acnes HL103PA1]
 gi|327328483|gb|EGE70245.1| Clp protease [Propionibacterium acnes HL096PA2]
 gi|327329651|gb|EGE71407.1| Clp protease [Propionibacterium acnes HL096PA3]
 gi|327334166|gb|EGE75880.1| Clp protease [Propionibacterium acnes HL097PA1]
 gi|327444270|gb|EGE90924.1| Clp protease [Propionibacterium acnes HL043PA2]
 gi|327444850|gb|EGE91504.1| Clp protease [Propionibacterium acnes HL043PA1]
 gi|327446336|gb|EGE92990.1| Clp protease [Propionibacterium acnes HL013PA2]
 gi|327452076|gb|EGE98730.1| Clp protease [Propionibacterium acnes HL092PA1]
 gi|327454887|gb|EGF01542.1| Clp protease [Propionibacterium acnes HL087PA3]
 gi|327457828|gb|EGF04483.1| Clp protease [Propionibacterium acnes HL083PA2]
 gi|328752325|gb|EGF65941.1| Clp protease [Propionibacterium acnes HL020PA1]
 gi|328755280|gb|EGF68896.1| Clp protease [Propionibacterium acnes HL087PA1]
 gi|328758239|gb|EGF71855.1| Clp protease [Propionibacterium acnes HL025PA2]
 gi|328760012|gb|EGF73595.1| Clp protease [Propionibacterium acnes HL099PA1]
          Length = 201

 Score =  182 bits (462), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 85/184 (46%), Positives = 124/184 (67%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           M   +T     + ++Y  LL+ RIVF+  +++D  A  +CAQ+L L AE+P+ +I LYIN
Sbjct: 4   MAGPETGGAGMTDNVYQSLLRNRIVFLGSEVKDENANALCAQMLLLNAEDPEADIYLYIN 63

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGG VT GMAIYDTMQ+I   ++T  MG AASMG  LL+AG  G R+ALP+A+IL+HQP
Sbjct: 64  SPGGSVTGGMAIYDTMQWISNDVATVTMGMAASMGQFLLTAGTPGKRYALPHAKILMHQP 123

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            GG  G A++I  +A+ +   KR L+++   + G T E++ +  DRDH  +A EA ++G+
Sbjct: 124 LGGVGGTATEIAINAKMLKDTKRELSQLNADHSGHTLEQILEDSDRDHWFTAQEALEYGL 183

Query: 201 VDKV 204
           +D V
Sbjct: 184 IDHV 187


>gi|300728339|ref|ZP_07061704.1| Clp protease [Prevotella bryantii B14]
 gi|299774404|gb|EFI71031.1| Clp protease [Prevotella bryantii B14]
          Length = 222

 Score =  182 bits (462), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 86/191 (45%), Positives = 132/191 (69%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P ++E+        D++SRL+ +RI+F+  +I+D+ A  + AQLL+L++ +  K+IS+
Sbjct: 31  LNPYILEERQLNVTQMDVFSRLMMDRIIFLGTEIDDYTANTLQAQLLYLDSVDSGKDISI 90

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+ IYDTMQFI   ++T C G AASM ++LL +G++G R AL ++R+++
Sbjct: 91  YINSPGGSVTAGLGIYDTMQFISSDVATICTGMAASMAAVLLVSGQEGKRSALTHSRVMI 150

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I K K+ L  I   +    YE+V +  DR++ M+A EA +
Sbjct: 151 HQPLGGVQGQASDIEIEAKEIQKFKKELYTIISNHSHTPYEKVWQDSDRNYWMNAEEAKE 210

Query: 198 WGVVDKVLMSR 208
           +G++D VL  +
Sbjct: 211 YGMIDTVLTRK 221


>gi|297153500|gb|ADI03212.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           bingchenggensis BCW-1]
          Length = 212

 Score =  182 bits (462), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 91/198 (45%), Positives = 130/198 (65%), Gaps = 2/198 (1%)

Query: 16  LGLVPMVVEQTNRGERSYD--IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQK 73
           L  +P   E+ +     +D  + ++LL +RIV +  Q++D  A  +CAQLL L AE+P+ 
Sbjct: 4   LTTLPPRAEEGDTPPSRFDDHLAAQLLAQRIVLLGTQVDDVSANRVCAQLLLLSAEDPRT 63

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +ISLYINSPGG VTAG+AIYDTM+ I   +ST  MG AASMG  LL+ G  G RFALPNA
Sbjct: 64  DISLYINSPGGSVTAGLAIYDTMRLIPNDVSTLAMGFAASMGQFLLTVGTPGKRFALPNA 123

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           RI++HQPS G  G A+DIE  A+++   K  +  I  ++ G++ E + +  DRD   +A 
Sbjct: 124 RIMMHQPSAGIGGTAADIEIQAENLQFTKEAIERITAEHTGQSEETIARDGDRDRWFTAE 183

Query: 194 EACDWGVVDKVLMSRIDI 211
           +A ++G+VD+V+ S  DI
Sbjct: 184 QAREYGIVDRVVESVADI 201


>gi|298714280|emb|CBJ27396.1| chloroplast clp protease P [Ectocarpus siliculosus]
          Length = 264

 Score =  182 bits (462), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 84/180 (46%), Positives = 128/180 (71%)

Query: 29  GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTA 88
           G    D+ SRLLK+RI+ +  ++ D +  ++ AQLL+L  ++P+K+I+LYINSPGG V+A
Sbjct: 72  GSEQMDVMSRLLKDRILLLGQEVNDEVGNVLVAQLLYLANDDPEKDITLYINSPGGSVSA 131

Query: 89  GMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQA 148
           G+AIYDTMQFI   ++T C G AASMG+ LL AG  G R +LPN+RI++HQP GG +GQA
Sbjct: 132 GLAIYDTMQFIPCDVATVCFGMAASMGAFLLGAGSAGKRKSLPNSRIMIHQPLGGAAGQA 191

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           +DIE  A++I+  KR LN    +   +  +++E+  DRD  M+  EA ++G++D+V+ ++
Sbjct: 192 ADIEIQAKEILFTKRLLNGYMSEYTDQPADKIEEDTDRDFFMTPIEAMEYGLIDEVIKTK 251


>gi|327540247|gb|EGF26836.1| Peptidase S14, ClpP [Rhodopirellula baltica WH47]
          Length = 205

 Score =  182 bits (461), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 87/189 (46%), Positives = 129/189 (68%)

Query: 25  QTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG 84
           Q+ + +R   +   LL+ RIVF+ G+I    A  I  +LL+L++EN +K+I LYINSPGG
Sbjct: 14  QSYQRQRQMTLGDLLLENRIVFMQGEIHYANANEIVMKLLYLQSENRRKDIHLYINSPGG 73

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
            VTA +AIYDTMQ +  P++T+C+G+A S  ++LL  G KG RF LPN+R+++HQP GG 
Sbjct: 74  SVTATLAIYDTMQMLSCPVATYCVGEACSGAAVLLIGGAKGKRFCLPNSRVMMHQPLGGV 133

Query: 145 SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           SGQ SDIE  A ++ + + +LNEI   +CGK+ E++ K  DRD  + A +A ++G+VD +
Sbjct: 134 SGQVSDIEIQAAEMFRYRDKLNEIISSHCGKSVEQIAKDTDRDFFLDAQQAKEYGLVDDL 193

Query: 205 LMSRIDIEE 213
           L+     EE
Sbjct: 194 LLGTPASEE 202


>gi|317504964|ref|ZP_07962912.1| ATP-dependent Clp protease, protease subunit [Prevotella salivae
           DSM 15606]
 gi|315663846|gb|EFV03565.1| ATP-dependent Clp protease, protease subunit [Prevotella salivae
           DSM 15606]
          Length = 221

 Score =  182 bits (461), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 85/191 (44%), Positives = 135/191 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P ++E+        D++SRL+ +RI+F+  +I+D+ A  + AQLL+L++ +  K+IS+
Sbjct: 30  LNPYILEERQLNVTQMDVFSRLMMDRIIFLGTEIDDYTANTLQAQLLYLDSVDSGKDISI 89

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+ IYDTMQFI   ++T C G AASM ++LL +G++G R AL ++R+++
Sbjct: 90  YINSPGGSVTAGLGIYDTMQFISSDVATICTGMAASMAAVLLVSGQEGKRSALTHSRVMI 149

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I K K+ L  I  ++    +E+V K  DR++ M++ EA +
Sbjct: 150 HQPLGGVQGQASDIEIEAKEIQKFKKELYTIISEHSHTPFEKVWKDSDRNYWMTSQEAKE 209

Query: 198 WGVVDKVLMSR 208
           +G++D+VL+ +
Sbjct: 210 YGMIDEVLVRK 220


>gi|332044615|gb|EGI80809.1| Endopeptidase Clp [Lacinutrix algicola 5H-3-7-4]
          Length = 181

 Score =  182 bits (461), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 90/183 (49%), Positives = 129/183 (70%), Gaps = 3/183 (1%)

Query: 23  VEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSP 82
           + +T + + + D  S+LL ER VF+ G ++D  A  +  +LL+L++    K+I+LYINSP
Sbjct: 1   MSKTTKAQDAID--SKLLDERKVFLWGMVDDKSAKHVIDRLLYLDSLET-KDITLYINSP 57

Query: 83  GGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSG 142
           GG VT+G A+YDT++ +K  +ST C G AASMGS+LLS G KG RF  P+AR+++HQPSG
Sbjct: 58  GGYVTSGFAMYDTIKSLKSDVSTVCTGLAASMGSILLSVGTKGKRFIQPHARVMIHQPSG 117

Query: 143 GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
           G  GQASDIE  AQ+I+K K    +I  +NCG+ +E+V K  +RDH M A E+ D+G+VD
Sbjct: 118 GARGQASDIEITAQEILKTKELSAKILAENCGQDFEKVMKDFNRDHWMGAEESKDYGIVD 177

Query: 203 KVL 205
            +L
Sbjct: 178 GIL 180


>gi|314974115|gb|EFT18211.1| Clp protease [Propionibacterium acnes HL053PA1]
          Length = 201

 Score =  182 bits (461), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 85/184 (46%), Positives = 124/184 (67%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           M   +T     + ++Y  LL+ RIVF+  +++D  A  +CAQ+L L AE+P+ +I LYIN
Sbjct: 4   MAGPETGGAGMTDNVYQSLLRNRIVFLGSEVKDENANALCAQMLLLNAEDPEADIYLYIN 63

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGG VT GMAIYDTMQ+I   ++T  MG AASMG  LL+AG  G R+ALP+A+IL+HQP
Sbjct: 64  SPGGSVTGGMAIYDTMQWISNDVATVTMGMAASMGQFLLTAGTPGKRYALPHAKILMHQP 123

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            GG  G A++I  +A+ +   KR L+++   + G T E++ +  DRDH  +A EA ++G+
Sbjct: 124 LGGVGGTATEIAINAKMLKDTKRELSQLNADHSGHTLEQILEDSDRDHWFTAQEALEYGL 183

Query: 201 VDKV 204
           +D V
Sbjct: 184 IDHV 187


>gi|281425294|ref|ZP_06256207.1| hypothetical protein HMPREF0971_02266 [Prevotella oris F0302]
 gi|299141492|ref|ZP_07034628.1| Clp protease [Prevotella oris C735]
 gi|281400587|gb|EFB31418.1| Clp protease [Prevotella oris F0302]
 gi|298576828|gb|EFI48698.1| Clp protease [Prevotella oris C735]
          Length = 221

 Score =  182 bits (461), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 85/191 (44%), Positives = 135/191 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P ++E+        D++SRL+ +RI+F+  +I+D+ A  + AQLL+L++ +  K+IS+
Sbjct: 30  LNPYILEERQLNVTQMDVFSRLMMDRIIFLGTEIDDYTANTLQAQLLYLDSVDSGKDISI 89

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+ IYDTMQFI   ++T C G AASM ++LL +G++G R AL ++R+++
Sbjct: 90  YINSPGGSVTAGLGIYDTMQFISSDVATICTGMAASMAAVLLVSGQEGKRSALTHSRVMI 149

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I K K+ L  I  ++    +E+V +  DR++ M+A EA +
Sbjct: 150 HQPLGGVQGQASDIEIEAKEIQKFKKELYTIISEHSHTPFEKVWQDSDRNYWMTAQEAKE 209

Query: 198 WGVVDKVLMSR 208
           +G++D+VL+ +
Sbjct: 210 YGMIDEVLVRK 220


>gi|323448447|gb|EGB04345.1| hypothetical protein AURANDRAFT_32730 [Aureococcus anophagefferens]
          Length = 197

 Score =  182 bits (461), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 85/172 (49%), Positives = 120/172 (69%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           DIY+RL +ERI+F+  +I+D +A  I   +L+L++E+  K I LYIN PGG V AG+AI+
Sbjct: 22  DIYNRLYRERIIFLGQEIDDELANQIIGVMLYLDSEDSTKPIYLYINCPGGSVIAGLAIF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           DTM  IK  + T  +G +ASM S LL  G KG R ALPN+R+++HQP GG  GQA DI+ 
Sbjct: 82  DTMNHIKSKVVTINIGLSASMASFLLCGGTKGSRLALPNSRVMIHQPMGGAQGQAEDIKV 141

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            A  I++IK  L ++Y    G+T +++   LDRD+ MSA EACD+G++DKV+
Sbjct: 142 EAAQIIRIKENLVKLYAMMTGQTQDQIILDLDRDNFMSAQEACDYGIIDKVI 193


>gi|145593253|ref|YP_001157550.1| endopeptidase Clp [Salinispora tropica CNB-440]
 gi|145302590|gb|ABP53172.1| ATP-dependent Clp protease proteolytic subunit ClpP [Salinispora
           tropica CNB-440]
          Length = 194

 Score =  182 bits (461), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 79/171 (46%), Positives = 121/171 (70%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I+ RLLKERIVF+  ++ D  A  +CAQ+L L AE+P ++I LYINSPGG V+AGMA+YD
Sbjct: 16  IFERLLKERIVFLGTEVTDESANRVCAQILLLAAEDPDRDIKLYINSPGGSVSAGMAVYD 75

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQF++  ++T  +G A SMG  LL AG  G R+ALP++ IL+HQPSGG  G A+DI   
Sbjct: 76  TMQFVRNDVATLALGMAGSMGQFLLCAGTAGKRYALPHSWILMHQPSGGMGGTAADIRVQ 135

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A++++ +K+ +  +  ++ G+T  E+++  DRD   +  +A ++G++D V+
Sbjct: 136 AENLLHVKKTMQGLIAQHSGRTLVEIQQDWDRDRWFTPEQAREYGLIDHVV 186


>gi|326330020|ref|ZP_08196334.1| Clp protease [Nocardioidaceae bacterium Broad-1]
 gi|325952228|gb|EGD44254.1| Clp protease [Nocardioidaceae bacterium Broad-1]
          Length = 201

 Score =  182 bits (461), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 83/191 (43%), Positives = 132/191 (69%), Gaps = 1/191 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVE+T RGER+ D+YSRLL +RIV++   I+D +A ++ AQL+ LE++ P  +I LY
Sbjct: 6   IPSVVEKTPRGERALDVYSRLLSDRIVYLGTPIDDGVANVVIAQLIHLESDAPDTQIELY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           +NSPGG  TA   IYDTMQF++ P++T C+GQAA   ++LL+AG+ G R  LP+AR++L 
Sbjct: 66  LNSPGGDPTAMFGIYDTMQFLRSPVATTCVGQAAGSAAVLLAAGDPGRRTVLPHARVVLQ 125

Query: 139 QPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP   G  G  +D++  A++I +++  ++ +  ++ G++ EE+    +RD ++ A EA  
Sbjct: 126 QPGQDGQRGDVTDLQVAAKEIGRLRAEMDTLLARHTGRSAEEIHADTERDLVLGAEEAVA 185

Query: 198 WGVVDKVLMSR 208
           +G+ D VL SR
Sbjct: 186 YGLADAVLESR 196


>gi|254774529|ref|ZP_05216045.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium avium
           subsp. avium ATCC 25291]
          Length = 196

 Score =  182 bits (461), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 85/171 (49%), Positives = 118/171 (69%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL ERI+F+  ++ D +A  +CAQ+L L AE+P K+ISLYINSPGG ++AGMAIYD
Sbjct: 14  VYERLLSERIIFLGSEVNDDVANRLCAQILLLAAEDPTKDISLYINSPGGSISAGMAIYD 73

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM      I+T+ MG AASMG  LL+AG KG R+ALP+ARIL+HQP GG +G A+DI   
Sbjct: 74  TMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQ 133

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+    IK+ +  +  +  G++ E +E   DRD   +A EA ++G VD ++
Sbjct: 134 AEQFHVIKKEMFRLNAEFTGQSIERIEADSDRDRWFTAQEALEYGFVDHII 184


>gi|41408379|ref|NP_961215.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium avium
           subsp. paratuberculosis K-10]
 gi|118462557|ref|YP_880940.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium avium
           104]
 gi|67460505|sp|Q73XM8|CLPP2_MYCPA RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|41396735|gb|AAS04598.1| ClpP [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118163844|gb|ABK64741.1| Clp protease [Mycobacterium avium 104]
          Length = 199

 Score =  182 bits (461), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 85/171 (49%), Positives = 118/171 (69%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL ERI+F+  ++ D +A  +CAQ+L L AE+P K+ISLYINSPGG ++AGMAIYD
Sbjct: 17  VYERLLSERIIFLGSEVNDDVANRLCAQILLLAAEDPTKDISLYINSPGGSISAGMAIYD 76

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM      I+T+ MG AASMG  LL+AG KG R+ALP+ARIL+HQP GG +G A+DI   
Sbjct: 77  TMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQ 136

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+    IK+ +  +  +  G++ E +E   DRD   +A EA ++G VD ++
Sbjct: 137 AEQFHVIKKEMFRLNAEFTGQSIERIEADSDRDRWFTAQEALEYGFVDHII 187


>gi|319900084|ref|YP_004159812.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bacteroides
           helcogenes P 36-108]
 gi|319415115|gb|ADV42226.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bacteroides
           helcogenes P 36-108]
          Length = 220

 Score =  182 bits (461), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 86/191 (45%), Positives = 132/191 (69%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P ++E+        D++SRL+ +RI+F+  QI+D+ A  + AQLL+L++ +P K+IS+
Sbjct: 30  LNPYILEERQLNVTQLDVFSRLMMDRIIFLGTQIDDYTANTLQAQLLYLDSVDPGKDISI 89

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+ IYDTMQFI   ++T C G AASM ++LL +G +  R AL ++R+++
Sbjct: 90  YINSPGGSVYAGLGIYDTMQFISSDVATICTGMAASMAAVLLVSGAESKRSALTHSRVMI 149

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I K+K+ L  I   +    +++V    DRD+ M+A EA +
Sbjct: 150 HQPMGGAQGQASDIEITAREIQKLKKELYAIIADHSHTDFDKVWADSDRDYWMTAQEAKE 209

Query: 198 WGVVDKVLMSR 208
           +G+VD+VL+ +
Sbjct: 210 YGMVDEVLIKK 220


>gi|225437581|ref|XP_002277104.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297743987|emb|CBI36957.3| unnamed protein product [Vitis vinifera]
          Length = 289

 Score =  182 bits (461), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 84/180 (46%), Positives = 127/180 (70%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ER   + S+L + RI+   G ++D MA +I AQLL+L+A +P K+I +Y+NSPGG VTAG
Sbjct: 98  ERFQSVVSQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAVDPDKDIVMYVNSPGGSVTAG 157

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
           MAI+DTM+ I+P +ST C+G AASMG+ LLS G KG R++LPN+RI++HQP GG  G  +
Sbjct: 158 MAIFDTMRHIRPDVSTVCVGLAASMGAFLLSCGTKGKRYSLPNSRIMIHQPLGGAQGGQT 217

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           DI+  A +++  K  LN     + G++ E++ +  DRD  MSA EA ++G++D V+++ +
Sbjct: 218 DIDIQANEMLHHKANLNGYLSYHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVILNPL 277


>gi|317124504|ref|YP_004098616.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Intrasporangium calvum DSM 43043]
 gi|315588592|gb|ADU47889.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Intrasporangium calvum DSM 43043]
          Length = 217

 Score =  182 bits (461), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 93/193 (48%), Positives = 137/193 (70%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T+ G +  D Y++L ++RI+F+  Q++D  A  I AQLL LE+ +P ++I +
Sbjct: 19  ILPQFEERTSYGMKRSDPYNKLFEDRIIFLGVQVDDASADDIIAQLLVLESLDPDRDILM 78

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQF++P I TF +GQAAS  ++LL AG  G RFALPNARIL+
Sbjct: 79  YINSPGGSFTAMTAIYDTMQFVRPDIQTFVIGQAASAAAVLLGAGAPGKRFALPNARILI 138

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASDIE  A ++++++  L +    + G+T E+V   ++RD I+S+ +A
Sbjct: 139 HQPALSGGDYGQASDIEIQANEVLRMRTWLEDTLAHHTGRTSEQVRNDIERDKILSSDDA 198

Query: 196 CDWGVVDKVLMSR 208
            ++G++D+VL SR
Sbjct: 199 KEYGLIDEVLASR 211


>gi|331695808|ref|YP_004332047.1| ATP-dependent Clp protease proteolytic subunit [Pseudonocardia
           dioxanivorans CB1190]
 gi|326950497|gb|AEA24194.1| ATP-dependent Clp protease proteolytic subunit [Pseudonocardia
           dioxanivorans CB1190]
          Length = 208

 Score =  182 bits (461), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 94/192 (48%), Positives = 138/192 (71%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T+ G +  + Y++L +ERI+F+  QI+D  A  + AQLL LE+ +P +EIS+
Sbjct: 11  VLPSFVERTSYGVKESNPYNKLFEERIIFLGVQIDDASANDVMAQLLCLESADPDREISM 70

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQFI+P I T C+GQAAS  ++LL+AG  G R A+ NARIL+
Sbjct: 71  YINSPGGSFTSLMAIYDTMQFIRPDIQTVCLGQAASAAAVLLAAGTPGRRLAVQNARILI 130

Query: 138 HQPSG-GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+  GF GQ SD+E  A +I +++R L     K+ G+T E+V   ++RD I++A EA 
Sbjct: 131 HQPATEGFYGQVSDLEIQAAEITRMRRLLETTLAKHSGRTPEQVHDDIERDRILTADEAK 190

Query: 197 DWGVVDKVLMSR 208
           ++G+VD+++ SR
Sbjct: 191 EYGIVDEIIQSR 202


>gi|32476642|ref|NP_869636.1| ATP-dependent Clp protease proteolytic subunit [Rhodopirellula
           baltica SH 1]
 gi|67460513|sp|Q7UK67|CLPP1_RHOBA RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|32447188|emb|CAD77014.1| ATP-dependent clp protease proteolytic subunit [Rhodopirellula
           baltica SH 1]
          Length = 227

 Score =  182 bits (461), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 87/189 (46%), Positives = 129/189 (68%)

Query: 25  QTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG 84
           Q+ + +R   +   LL+ RIVF+ G+I    A  I  +LL+L++EN +K+I LYINSPGG
Sbjct: 36  QSYQRQRQMTLGDLLLENRIVFMQGEIHYANANEIVMKLLYLQSENRRKDIHLYINSPGG 95

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
            VTA +AIYDTMQ +  P++T+C+G+A S  ++LL  G KG RF LPN+R+++HQP GG 
Sbjct: 96  SVTATLAIYDTMQMLSCPVATYCVGEACSGAAVLLIGGAKGKRFCLPNSRVMMHQPLGGV 155

Query: 145 SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           SGQ SDIE  A ++ + + +LNEI   +CGK+ E++ K  DRD  + A +A ++G+VD +
Sbjct: 156 SGQVSDIEIQAAEMFRYRDKLNEIISSHCGKSVEQIAKDTDRDFFLDAQQAKEYGLVDDL 215

Query: 205 LMSRIDIEE 213
           L+     EE
Sbjct: 216 LLGTPASEE 224


>gi|159465361|ref|XP_001690891.1| active subunit of the chloroplast ClpP complex [Chlamydomonas
           reinhardtii]
 gi|158279577|gb|EDP05337.1| active subunit of the chloroplast ClpP complex [Chlamydomonas
           reinhardtii]
          Length = 256

 Score =  181 bits (460), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 82/176 (46%), Positives = 128/176 (72%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ER   + S+L ++RIV + G ++D MA L+ AQLL+L++ + +++I++Y+NSPGG VTAG
Sbjct: 66  ERFQGVVSQLFQQRIVRLGGAVDDDMANLLVAQLLYLDSVDNKRDITMYVNSPGGSVTAG 125

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
           MA++DTM+ I+P +ST C+G AASMG+ +L++G+ G R++LPN+RI++HQP GG  GQA+
Sbjct: 126 MAVFDTMRHIRPDVSTCCIGLAASMGAFILASGQAGKRYSLPNSRIMIHQPLGGAQGQAT 185

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           DIE  A +I+  K  LN    +  G++ E + K  DRD  MS  EA ++G+VD ++
Sbjct: 186 DIEIQANEILHHKLTLNGYLAQFTGQSMETITKDTDRDFFMSPQEAIEYGLVDAII 241


>gi|311896031|dbj|BAJ28439.1| putative ATP-dependent Clp protease proteolytic subunit
           [Kitasatospora setae KM-6054]
          Length = 220

 Score =  181 bits (460), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 90/192 (46%), Positives = 140/192 (72%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP  VE+T++G R YD Y++L +ERI+F+  Q++D  A  I AQL+ LE+ +P ++ISL
Sbjct: 23  IVPRFVERTSQGIREYDPYAKLFEERIIFLGSQVDDVSANDIMAQLICLESMDPDRDISL 82

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQF+KP I T CMGQAAS  +++L+AG  G R ALPNAR+L+
Sbjct: 83  YINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVILAAGTPGKRLALPNARVLI 142

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP +    GQ SD+E  A++I +++ +L  +  K+  +T ++V + ++RD I++A E+ 
Sbjct: 143 HQPYTETGRGQVSDLEIQAKEIFRMREQLETMLAKHSSQTVDKVREDIERDKILTAEESL 202

Query: 197 DWGVVDKVLMSR 208
           ++G++D+++ +R
Sbjct: 203 EYGLIDQIVSTR 214


>gi|325300151|ref|YP_004260068.1| ATP-dependent Clp protease proteolytic subunit [Bacteroides
           salanitronis DSM 18170]
 gi|324319704|gb|ADY37595.1| ATP-dependent Clp protease proteolytic subunit [Bacteroides
           salanitronis DSM 18170]
          Length = 222

 Score =  181 bits (460), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 86/188 (45%), Positives = 132/188 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P ++E+        D++SRL+ +RI+F+  QI+D+ A  + AQLL+L++ +  K+IS+
Sbjct: 29  LNPYILEERQLNVTQLDVFSRLMMDRIIFLGTQIDDYTANTLQAQLLYLDSVDSGKDISI 88

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+ IYDTMQFI   ++T C G AASM ++LL AG++G R AL ++R+++
Sbjct: 89  YINSPGGSVYAGLGIYDTMQFIGSDVATICTGMAASMAAVLLVAGKEGKRSALTHSRVMI 148

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I K+K+ L  I  ++    +++V    DRD+ M+A EA +
Sbjct: 149 HQPMGGAQGQASDIEITAREIQKLKKELYTIIAEHSHTDFDKVWADSDRDYWMTAQEAKE 208

Query: 198 WGVVDKVL 205
           +G++D+VL
Sbjct: 209 YGMIDEVL 216


>gi|304383401|ref|ZP_07365867.1| ATP-dependent Clp protease proteolytic subunit [Prevotella marshii
           DSM 16973]
 gi|304335569|gb|EFM01833.1| ATP-dependent Clp protease proteolytic subunit [Prevotella marshii
           DSM 16973]
          Length = 224

 Score =  181 bits (460), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 86/188 (45%), Positives = 132/188 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P ++E+        D++SRL+ +RI+F+  +I+D+ A  + AQLL+L++ +  K+IS+
Sbjct: 33  LNPYILEERQLNVTQLDVFSRLMMDRIIFLGTEIDDYTANTLQAQLLYLDSVDSGKDISI 92

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+ IYDTMQFI   ++T C G AASM ++LL AG++G R AL ++R+++
Sbjct: 93  YINSPGGSVTAGLGIYDTMQFITSDVATICTGMAASMAAVLLVAGQEGKRSALTHSRVMI 152

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I K K+ L  I  ++    +E+V +  DR++ M+A EA +
Sbjct: 153 HQPLGGVQGQASDIEIEAKEIQKFKKELYTIISEHSHTPFEKVWQDSDRNYWMNAEEAKE 212

Query: 198 WGVVDKVL 205
           +G++D VL
Sbjct: 213 YGMIDAVL 220


>gi|288800853|ref|ZP_06406310.1| Clp protease [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332314|gb|EFC70795.1| Clp protease [Prevotella sp. oral taxon 299 str. F0039]
          Length = 222

 Score =  181 bits (460), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 85/188 (45%), Positives = 131/188 (69%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P ++E+        D++SRL+ +RI+F+   I+D+ A  + AQLL+L++ +  K+IS+
Sbjct: 31  LNPYILEERQLNVTQMDVFSRLMMDRIIFLGTPIDDYTANTLQAQLLYLDSVDSGKDISI 90

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+ IYDTMQFI   ++T C G AASM ++LL +G +G R ALP+ R+++
Sbjct: 91  YINSPGGSVTAGLGIYDTMQFITSDVATICTGMAASMAAVLLVSGAEGKRSALPHGRVMI 150

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I+K+K+ L  I   +    +++V +  DR++ M+A EA +
Sbjct: 151 HQPLGGVQGQASDIEIEAREIIKMKKELYTIISDHSHTPFDKVWQDSDRNYWMTAEEAKE 210

Query: 198 WGVVDKVL 205
           +G++D VL
Sbjct: 211 YGMIDTVL 218


>gi|158316682|ref|YP_001509190.1| endopeptidase Clp [Frankia sp. EAN1pec]
 gi|158112087|gb|ABW14284.1| Endopeptidase Clp [Frankia sp. EAN1pec]
          Length = 236

 Score =  181 bits (460), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 85/176 (48%), Positives = 123/176 (69%), Gaps = 1/176 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           ++ RLL+ RIVF+   +ED +A  ICA+LL L +++P  +I LYINSPGG V+AGMAIYD
Sbjct: 41  VFHRLLQNRIVFLGSVVEDTIANAICAKLLLLASDDPSADIHLYINSPGGSVSAGMAIYD 100

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ+I   ++T  +G A SMG  LLS+G  G RFALP++R+++HQPSGG  G A+DI   
Sbjct: 101 TMQYIANDVATVALGFAGSMGQFLLSSGAPGKRFALPHSRVMMHQPSGGIGGTATDIAIQ 160

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           A+ ++  KR + E   ++ G+  E +E   DRD   +A EA D+G+VD+V+ +R+D
Sbjct: 161 AEQLLFTKRLIQERIAEHTGQPVERIEADSDRDRWFTAEEARDYGLVDRVI-TRVD 215


>gi|224025975|ref|ZP_03644341.1| hypothetical protein BACCOPRO_02726 [Bacteroides coprophilus DSM
           18228]
 gi|224019211|gb|EEF77209.1| hypothetical protein BACCOPRO_02726 [Bacteroides coprophilus DSM
           18228]
          Length = 224

 Score =  181 bits (460), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 86/188 (45%), Positives = 131/188 (69%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P ++E+        D++SRL+ +RI+F+  QI+D+ A  + AQLL+L++ +  K+IS+
Sbjct: 31  LNPYILEERQLNVTQLDVFSRLMMDRIIFLGTQIDDYTANTLQAQLLYLDSVDAGKDISI 90

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+ IYDTMQFI   ++T C G AASM ++LL AG++G R AL ++R+++
Sbjct: 91  YINSPGGSVYAGLGIYDTMQFISSDVATICTGMAASMAAVLLVAGKEGKRSALTHSRVMI 150

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I K+K+ L  I   +    +++V    DRD+ M+A EA +
Sbjct: 151 HQPMGGAQGQASDIEITAREIQKLKKELYTIIADHSHTDFDKVWADSDRDYWMTAQEAKE 210

Query: 198 WGVVDKVL 205
           +G++D+VL
Sbjct: 211 YGMIDEVL 218


>gi|295838900|ref|ZP_06825833.1| Clp protease [Streptomyces sp. SPB74]
 gi|302519066|ref|ZP_07271408.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sp. SPB78]
 gi|197695452|gb|EDY42385.1| Clp protease [Streptomyces sp. SPB74]
 gi|302427961|gb|EFK99776.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sp. SPB78]
          Length = 215

 Score =  181 bits (460), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 88/171 (51%), Positives = 120/171 (70%), Gaps = 1/171 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +YSRLL ERI+F+  Q++D +A  I AQ+L L A+ P K+I LYINSPGG VTAGMAIYD
Sbjct: 32  VYSRLLGERIIFLGQQVDDDIANKITAQMLLLAAD-PSKDIYLYINSPGGSVTAGMAIYD 90

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ+I   + T  MG AASMG  LL+ G  G RFALPN  IL+HQ S G  G ASDI+  
Sbjct: 91  TMQYIPNDVITIGMGMAASMGQFLLTGGTPGKRFALPNTDILMHQGSAGIGGTASDIKIQ 150

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+ +++ K R+ EI  ++ G+T E++ +  DRD   +A EA D+G++D+++
Sbjct: 151 AEYLLRTKNRMAEITARHSGQTIEKIIRDGDRDRWFTAEEAKDYGLIDEII 201


>gi|3834445|gb|AAC70947.1| ATP-dependent Clp protease proteolytic subunit 1 [Streptomyces
           coelicolor A3(2)]
          Length = 218

 Score =  181 bits (460), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 90/171 (52%), Positives = 122/171 (71%), Gaps = 2/171 (1%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y+RLL ERI+F+   ++D +A  I AQLL L A +P K+I LYINSPGG +TAGMAIYD
Sbjct: 36  VYNRLLGERIIFLGQPVDDDIANKITAQLLLL-ASDPDKDIFLYINSPGGSITAGMAIYD 94

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ+IK  + T  MG AASMG  LLSAG    +FALPNA IL+HQPS G +G ASDI+ H
Sbjct: 95  TMQYIKNDVVTIAMGLAASMGQFLLSAGTP-RQFALPNAEILIHQPSAGLAGSASDIKIH 153

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+ ++  KRR+ E+  ++ G+T E++ +  DRD    A EA ++G++D V+
Sbjct: 154 AERLLHTKRRMAELTSQHTGQTIEQITRDSDRDRWFDAFEAKEYGLIDDVI 204


>gi|318076382|ref|ZP_07983714.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces sp.
           SA3_actF]
          Length = 205

 Score =  181 bits (460), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 88/171 (51%), Positives = 120/171 (70%), Gaps = 1/171 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +YSRLL ERI+F+  Q++D +A  I AQ+L L A+ P K+I LYINSPGG VTAGMAIYD
Sbjct: 22  VYSRLLGERIIFLGQQVDDDIANKITAQMLLLAAD-PSKDIYLYINSPGGSVTAGMAIYD 80

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ+I   + T  MG AASMG  LL+ G  G RFALPN  IL+HQ S G  G ASDI+  
Sbjct: 81  TMQYIPNDVITIGMGMAASMGQFLLTGGTPGKRFALPNTDILMHQGSAGIGGTASDIKIQ 140

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+ +++ K R+ EI  ++ G+T E++ +  DRD   +A EA D+G++D+++
Sbjct: 141 AEYLLRTKNRMAEITARHSGQTIEKIIRDGDRDRWFTAEEAKDYGLIDEII 191


>gi|256375241|ref|YP_003098901.1| endopeptidase Clp [Actinosynnema mirum DSM 43827]
 gi|255919544|gb|ACU35055.1| Endopeptidase Clp [Actinosynnema mirum DSM 43827]
          Length = 209

 Score =  181 bits (460), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 88/192 (45%), Positives = 140/192 (72%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T+ G +  + Y++L +ERI+F+  Q++D  A  + AQLL LE+++P ++I +
Sbjct: 12  VLPSFVERTSYGVKESNPYNKLFEERIIFLGVQVDDTSANDVMAQLLVLESDDPDRDIYM 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA MAIYDTMQF++P I T C+GQA+S  ++LL+AG  G R ALPNAR+++
Sbjct: 72  YINSPGGSFTALMAIYDTMQFVRPDIRTVCLGQASSAAAVLLAAGTPGKRTALPNARVMI 131

Query: 138 HQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+ GG  GQ SD+E  A +I +++ ++ E   ++ G+T E+V   +DRD I++A+EA 
Sbjct: 132 HQPAMGGVRGQVSDLEIQAAEITRMRTQMEEALSRHTGRTVEQVHTDIDRDRILTAAEAQ 191

Query: 197 DWGVVDKVLMSR 208
           ++G++D+V+  R
Sbjct: 192 EYGIIDEVMPYR 203


>gi|318060124|ref|ZP_07978847.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces sp.
           SA3_actG]
          Length = 201

 Score =  181 bits (460), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 88/171 (51%), Positives = 120/171 (70%), Gaps = 1/171 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +YSRLL ERI+F+  Q++D +A  I AQ+L L A+ P K+I LYINSPGG VTAGMAIYD
Sbjct: 18  VYSRLLGERIIFLGQQVDDDIANKITAQMLLLAAD-PSKDIYLYINSPGGSVTAGMAIYD 76

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ+I   + T  MG AASMG  LL+ G  G RFALPN  IL+HQ S G  G ASDI+  
Sbjct: 77  TMQYIPNDVITIGMGMAASMGQFLLTGGTPGKRFALPNTDILMHQGSAGIGGTASDIKIQ 136

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+ +++ K R+ EI  ++ G+T E++ +  DRD   +A EA D+G++D+++
Sbjct: 137 AEYLLRTKNRMAEITARHSGQTIEKIIRDGDRDRWFTAEEAKDYGLIDEII 187


>gi|289641548|ref|ZP_06473710.1| Endopeptidase Clp [Frankia symbiont of Datisca glomerata]
 gi|289508643|gb|EFD29580.1| Endopeptidase Clp [Frankia symbiont of Datisca glomerata]
          Length = 211

 Score =  181 bits (460), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 85/171 (49%), Positives = 118/171 (69%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +++RLL+ERI+F+   +ED +A  I  QLL L AE+P ++ISLYINSPGG V+AGMAIYD
Sbjct: 28  VFNRLLRERIIFLGSVVEDQIANTIIGQLLLLSAEDPNRDISLYINSPGGSVSAGMAIYD 87

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            MQ+++  I T  +G AASMG  LL AG  G R++LP+ RI++HQPSGG  G ASDI   
Sbjct: 88  VMQYVENDIVTVALGLAASMGQFLLCAGTAGKRYSLPHTRIMMHQPSGGIGGTASDIAIQ 147

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+ ++  KR + E    + G+  E++E+  DRD   +A EA D+G VD V+
Sbjct: 148 AEQMLYTKRMMQERIAFHTGQPVEQIERDSDRDRWFTAVEAKDYGFVDHVV 198


>gi|254382769|ref|ZP_04998126.1| ATP-dependent Clp protease proteolytic subunit 4 [Streptomyces sp.
           Mg1]
 gi|194341671|gb|EDX22637.1| ATP-dependent Clp protease proteolytic subunit 4 [Streptomyces sp.
           Mg1]
          Length = 224

 Score =  181 bits (459), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 94/192 (48%), Positives = 138/192 (71%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T++G R YD Y++L +ERI+F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 28  VIPRFVERTSQGVREYDPYAKLFEERIIFLGVQIDDASANDVMAQLLCLESMDPDRDISI 87

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQF+KP IST CMGQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 88  YINSPGGSFTALTAIYDTMQFVKPDISTVCMGQAASAAAVLLAAGTPGKRLALPNARVLI 147

Query: 138 HQPSGGFSG-QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQPSGG    Q SD+E  A +I++++ +L  +  K+     E++   ++RD I++A +A 
Sbjct: 148 HQPSGGTGREQLSDLEIAANEILRMRDQLETMLAKHSTTPIEKIRDDIERDKILTAEDAL 207

Query: 197 DWGVVDKVLMSR 208
            +G+VD+V+ +R
Sbjct: 208 AYGLVDQVVSTR 219


>gi|256396401|ref|YP_003117965.1| ATP-dependent Clp protease proteolytic subunit [Catenulispora
           acidiphila DSM 44928]
 gi|256362627|gb|ACU76124.1| Endopeptidase Clp [Catenulispora acidiphila DSM 44928]
          Length = 208

 Score =  181 bits (459), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 83/177 (46%), Positives = 123/177 (69%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y+RLL+ RI+F+  Q++D +A  +CAQLL L AE+ +K+I  YINSPGG V+AG+AIYD
Sbjct: 23  VYNRLLRNRIIFLGSQVDDDIANSLCAQLLLLTAEDSEKDIYFYINSPGGSVSAGLAIYD 82

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM ++   I T  MG AASMG  LL+AG    RFALPN  ILLHQ S G  G A+DI   
Sbjct: 83  TMMYVPNDIVTVGMGMAASMGQFLLTAGTPNKRFALPNTEILLHQGSAGIGGSAADIRIQ 142

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           A+ +++ K+R+ E+  ++ G+T +++EK  DRD   S++EA ++G++D ++    D+
Sbjct: 143 AERLLRSKKRMAELTAQHTGQTLDKIEKDSDRDTWFSSAEAKEYGLIDDIMTHANDV 199


>gi|183221092|ref|YP_001839088.1| ATP-dependent Clp protease proteolytic subunit [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189911184|ref|YP_001962739.1| ATP-dependent Clp protease [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167775860|gb|ABZ94161.1| Protease subunit of an ATP-dependent Clp protease [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167779514|gb|ABZ97812.1| ATP-dependent Clp protease proteolytic subunit (ATP-dependent Clp
           protease proteolytic subunit) [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 202

 Score =  181 bits (459), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 83/176 (47%), Positives = 123/176 (69%), Gaps = 3/176 (1%)

Query: 38  RLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97
           + L++R +F+ G + D  +  + A+L++LE  +P K I+ YINSPGGVVT+G+ +YDTMQ
Sbjct: 27  KFLEKRKIFLWGPVTDESSKELTAKLMYLEMVDPGKPITFYINSPGGVVTSGLVVYDTMQ 86

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS--GGFSGQASDIERHA 155
            I  P+ T CMG AASMGS+LL  G+KG R+  PN R+++HQPS  G     A+D+  HA
Sbjct: 87  MISSPVHTVCMGMAASMGSILLIGGKKGNRYIWPNGRVMIHQPSIGGQIQAPATDLLIHA 146

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           QDIVK K +LN++    CGK+YE++ +  DRD+ M A +A  +G+VDK++ + ID+
Sbjct: 147 QDIVKTKEKLNQMLADACGKSYEQLVEDTDRDYYMDAEQALAYGIVDKIV-NTIDV 201


>gi|145347023|ref|XP_001417979.1| chloroplast Clp protease, subunit of ClpP peptidase complex
           [Ostreococcus lucimarinus CCE9901]
 gi|144578207|gb|ABO96272.1| chloroplast Clp protease, subunit of ClpP peptidase complex
           [Ostreococcus lucimarinus CCE9901]
          Length = 319

 Score =  181 bits (459), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 85/176 (48%), Positives = 121/176 (68%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ++S   +  LL+ RIVF+  Q++D  A  + +QLL L+ ++P KEI L+INSPGG VTAG
Sbjct: 95  DQSGSPFDSLLRNRIVFLGSQVDDFNADAVISQLLLLDQQDPTKEIKLFINSPGGSVTAG 154

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
           M IYD MQF + P+ST C+G AASMG+ LL++GEKG R ++PNARI++HQP GG  G A 
Sbjct: 155 MGIYDAMQFCRAPVSTVCLGLAASMGAFLLASGEKGRRMSMPNARIMIHQPLGGAQGSAV 214

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           DIE  A++I+  K  LN +   + G+  + +++  DRD  MS  EA  +GV+D V+
Sbjct: 215 DIEIQAKEIMHHKANLNRLMAFHTGQDVKTIDEDTDRDRYMSPLEAKQYGVIDIVI 270


>gi|303274444|ref|XP_003056542.1| endopeptidase clp chloroplast precursor [Micromonas pusilla
           CCMP1545]
 gi|226462626|gb|EEH59918.1| endopeptidase clp chloroplast precursor [Micromonas pusilla
           CCMP1545]
          Length = 283

 Score =  181 bits (459), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 83/172 (48%), Positives = 123/172 (71%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D +  LL++RIVF+  Q++D  A  + +QLL L+A++P+K+I L+INSPGG VTAGM IY
Sbjct: 77  DPFGLLLRQRIVFLGNQVDDFTADAVISQLLLLDAQDPKKDIKLFINSPGGSVTAGMGIY 136

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D MQ  +  +ST CMG AASMG+ LL+AG +G R ++PNARI++HQP GG SGQA DIE 
Sbjct: 137 DAMQMCRADVSTVCMGLAASMGAFLLTAGSRGKRLSMPNARIMIHQPLGGASGQAVDIEI 196

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            AQ+I+  K  LN +   +  +  +++++  DRD  MS  EA ++G++D+++
Sbjct: 197 QAQEIMFHKANLNRLMAFHTDQDVKQIDEDTDRDRYMSPLEAKNYGIIDEII 248


>gi|61680536|pdb|1Y7O|A Chain A, The Structure Of Streptococcus Pneumoniae A153p Clpp
 gi|61680537|pdb|1Y7O|B Chain B, The Structure Of Streptococcus Pneumoniae A153p Clpp
 gi|61680538|pdb|1Y7O|C Chain C, The Structure Of Streptococcus Pneumoniae A153p Clpp
 gi|61680539|pdb|1Y7O|D Chain D, The Structure Of Streptococcus Pneumoniae A153p Clpp
 gi|61680540|pdb|1Y7O|E Chain E, The Structure Of Streptococcus Pneumoniae A153p Clpp
 gi|61680541|pdb|1Y7O|F Chain F, The Structure Of Streptococcus Pneumoniae A153p Clpp
 gi|61680542|pdb|1Y7O|G Chain G, The Structure Of Streptococcus Pneumoniae A153p Clpp
          Length = 218

 Score =  181 bits (459), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 87/189 (46%), Positives = 130/189 (68%), Gaps = 2/189 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+ A  + AQLLFL+A++  K+I L
Sbjct: 21  MIPVVIEQTSRGERSYDIYSRLLKDRIIXLTGPVEDNXANSVIAQLLFLDAQDSTKDIYL 80

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DT  FIK  + T   G AAS G+++ S+G KG RF LPNA   +
Sbjct: 81  YVNTPGGSVSAGLAIVDTXNFIKADVQTIVXGXAASXGTVIASSGAKGKRFXLPNAEYXI 140

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+    + ++K +  L +I  +N G++ E+V    +RD+  SA E 
Sbjct: 141 HQPXGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSXEKVHADAERDNWXSAQET 200

Query: 196 CDWGVVDKV 204
            ++G +D++
Sbjct: 201 LEYGFIDEI 209


>gi|323456646|gb|EGB12512.1| hypothetical protein AURANDRAFT_70482 [Aureococcus anophagefferens]
          Length = 1031

 Score =  181 bits (459), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 86/173 (49%), Positives = 123/173 (71%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+ SRLLK+RI+ +  ++ D +A ++ AQ+L+L  E+P+ +I+LYINSPGG V+AGMAIY
Sbjct: 70  DVVSRLLKDRILLLGSEVNDEVANVLVAQMLYLANEDPEGDITLYINSPGGSVSAGMAIY 129

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           DTMQFI   +ST C G AASMG+ LL AG KG R +LPNARI++HQP GG  GQA+DIE 
Sbjct: 130 DTMQFIPCDVSTVCFGMAASMGAFLLGAGSKGKRKSLPNARIMIHQPLGGAQGQAADIEI 189

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
            A++I+  K  +N    +  G+  +++ +  DRD  M  +EA D+G++D+  M
Sbjct: 190 QAKEILFTKACINTYMSEYTGQPIDKLAEDTDRDFYMMPTEAQDYGLIDESRM 242


>gi|256396400|ref|YP_003117964.1| ATP-dependent Clp protease proteolytic subunit [Catenulispora
           acidiphila DSM 44928]
 gi|256362626|gb|ACU76123.1| Endopeptidase Clp [Catenulispora acidiphila DSM 44928]
          Length = 214

 Score =  181 bits (459), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 97/192 (50%), Positives = 135/192 (70%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP   E+T+ G R +D YS+L  ERI+F+  QI+D  A  + AQL+ LE+ +P ++IS+
Sbjct: 16  IVPKFSERTSYGFREWDPYSKLFDERIIFLGVQIDDASANDVMAQLITLESMDPDRDISI 75

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTM ++KP I T CMGQAAS  ++LL+AG  G R ALPNARIL+
Sbjct: 76  YINSPGGSFTALTAIYDTMMWVKPDIQTVCMGQAASAAAVLLAAGTPGKRLALPNARILI 135

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP S G  G  SD+E  A +I++++  + ++  K+ G+  E V K +DRD I+SA EA 
Sbjct: 136 HQPWSEGGRGDLSDLEIQANEILRMRTVMEQMLSKHSGREPELVHKDIDRDKILSADEAK 195

Query: 197 DWGVVDKVLMSR 208
           D+G++D+VL SR
Sbjct: 196 DYGIIDQVLTSR 207


>gi|302532651|ref|ZP_07284993.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sp. C]
 gi|302441546|gb|EFL13362.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sp. C]
          Length = 212

 Score =  181 bits (459), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 85/181 (46%), Positives = 125/181 (69%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           + +RLL +RIV +  Q+++  A  +CAQLL L A++P+ +ISLY+NSPGG VTAG+AIYD
Sbjct: 25  LAARLLDQRIVLLGTQVDEVSANRVCAQLLLLSAQDPRSDISLYVNSPGGSVTAGLAIYD 84

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM+ I   +ST  MG AASMG  LL+ G  G RFALPNARI++HQPS G  G A+D+E  
Sbjct: 85  TMRLIPNDVSTLAMGFAASMGQFLLTVGTPGKRFALPNARIMMHQPSAGIGGTAADVEIQ 144

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           A+++  IK+ +  I  ++ G++ E + +  DRD   +A +A ++G+VD+V+ S  DI   
Sbjct: 145 AENLRFIKKAVERITAQHTGQSEETIARDGDRDRWFTAEQAREYGMVDRVVESLADIRPA 204

Query: 215 S 215
           +
Sbjct: 205 T 205


>gi|219115403|ref|XP_002178497.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217410232|gb|EEC50162.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 260

 Score =  181 bits (459), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 85/175 (48%), Positives = 120/175 (68%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+ SRLLK+RI+ +   + D +A ++ AQLL+L  E+P K+I+LYINSPGG V+AG+AIY
Sbjct: 72  DVVSRLLKDRILLLGTDVNDEVANVLVAQLLYLANEDPNKDITLYINSPGGSVSAGLAIY 131

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           DTM+FI   + T C G AASMG+ LL AG  G R +LPNARI++HQP GG  GQA DIE 
Sbjct: 132 DTMKFIPCDVQTVCFGMAASMGAFLLGAGTPGKRKSLPNARIMIHQPLGGAQGQAQDIEI 191

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
            A++I+  K  LN+       +  E++    DRD  M+  EA D+G++D+V+ ++
Sbjct: 192 QAKEILYTKALLNKFIADYTDQPEEKIAADCDRDFFMTPYEALDYGIIDEVIKTK 246


>gi|258652074|ref|YP_003201230.1| endopeptidase Clp [Nakamurella multipartita DSM 44233]
 gi|258555299|gb|ACV78241.1| Endopeptidase Clp [Nakamurella multipartita DSM 44233]
          Length = 220

 Score =  181 bits (458), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 95/192 (49%), Positives = 138/192 (71%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T+ G +  + Y++L +ERI+F+  QI+D  A  + AQLL LE+ +P +EI +
Sbjct: 26  ILPSFVERTSYGVKESNPYNKLFEERIIFLGVQIDDASANDVMAQLLTLESTDPDREIIM 85

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+  AIYDTMQF++P I T C+GQAAS  ++LL+AG  G R ALPN+RIL+
Sbjct: 86  YINSPGGSFTSMTAIYDTMQFVRPHIQTVCLGQAASAAAVLLAAGSPGRRLALPNSRILI 145

Query: 138 HQPSG-GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+  G  GQ SD+E  A++I +++  L EI  ++  KT EEV K +DRD I++A+EA 
Sbjct: 146 HQPATEGVYGQVSDLEIQAKEIGRMRAALEEILSRHSTKTPEEVRKDIDRDKILTAAEAK 205

Query: 197 DWGVVDKVLMSR 208
           D+G++D+VL  R
Sbjct: 206 DYGLIDEVLQYR 217


>gi|282866711|ref|ZP_06275751.1| Endopeptidase Clp [Streptomyces sp. ACTE]
 gi|282558410|gb|EFB63972.1| Endopeptidase Clp [Streptomyces sp. ACTE]
          Length = 205

 Score =  181 bits (458), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 92/189 (48%), Positives = 126/189 (66%), Gaps = 2/189 (1%)

Query: 18  LVPMVVEQTNRGERSYD-IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           L+P+   + + G    D +YSRLL ERI+F+  Q++D +A  I AQLL L A+ P K+I 
Sbjct: 4   LMPLAAGEPSLGGGLGDQVYSRLLGERIIFLGQQVDDDIANKITAQLLLLAAD-PDKDIY 62

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGMA+YDTMQ+I   + T  MG AASMG  LL+ G  G RFALPN  IL
Sbjct: 63  LYINSPGGSVTAGMAVYDTMQYIPNDVVTIGMGMAASMGQFLLTGGTAGKRFALPNTDIL 122

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQ S G  G ASDI+  A+ +++ K R+ EI   + G+T E + +  DRD   +A EA 
Sbjct: 123 MHQGSAGIGGTASDIKIQAEYLLRTKTRMAEITAHHSGQTVETIIRDGDRDRWYTAEEAK 182

Query: 197 DWGVVDKVL 205
           D+G++D+++
Sbjct: 183 DYGLIDEII 191


>gi|328882449|emb|CCA55688.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           venezuelae ATCC 10712]
          Length = 224

 Score =  181 bits (458), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 92/192 (47%), Positives = 139/192 (72%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP  VE+T++G R YD Y++L +ER++F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 25  VVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISI 84

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQF+KP I T CMGQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 85  YINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLI 144

Query: 138 HQPSGGFSG-QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQPSGG    Q SD+E  A++I++++ +L ++  K+     E++   ++RD I++A +A 
Sbjct: 145 HQPSGGTGREQLSDLEIAAREILRMRTQLEDMLAKHSSTPIEKIRDDIERDKILTAEDAL 204

Query: 197 DWGVVDKVLMSR 208
            +G+VD+++ +R
Sbjct: 205 AYGLVDQIVSTR 216


>gi|269125773|ref|YP_003299143.1| endopeptidase Clp [Thermomonospora curvata DSM 43183]
 gi|268310731|gb|ACY97105.1| Endopeptidase Clp [Thermomonospora curvata DSM 43183]
          Length = 213

 Score =  181 bits (458), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 87/173 (50%), Positives = 123/173 (71%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           ++ +LL++RIVF+  Q++D +A  ICA+LL L AE+ +++I LYINSPGG VTAGMAIYD
Sbjct: 30  LFQQLLRKRIVFLGQQVDDDIANRICAELLLLSAEDGERDIYLYINSPGGSVTAGMAIYD 89

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            MQ++   ++T  +G AASMG  LL AG  G R+ALP+ARI++HQPSGG  G ASDI+  
Sbjct: 90  IMQYVPNDVATVGIGLAASMGQFLLCAGAPGKRYALPHARIMMHQPSGGIGGTASDIKIQ 149

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+ ++ +KR L E    + G+T E++E+  DRD   +A EA  +G VD V+ S
Sbjct: 150 AEQMLYVKRTLAERIALHTGQTVEQIERDSDRDRWFTAEEAKAYGFVDHVVRS 202


>gi|320161285|ref|YP_004174509.1| ATP-dependent Clp protease proteolytic subunit [Anaerolinea
           thermophila UNI-1]
 gi|319995138|dbj|BAJ63909.1| ATP-dependent Clp protease proteolytic subunit [Anaerolinea
           thermophila UNI-1]
          Length = 218

 Score =  181 bits (458), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 84/172 (48%), Positives = 122/172 (70%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+ + LL+ RI+++   I+D +A  I AQLLFL  E+ +  I +YINSPGG V AG+AIY
Sbjct: 36  DLNALLLRNRIIYLGTAIDDKVANNIVAQLLFLSNEDREAPIQMYINSPGGQVYAGLAIY 95

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D MQ I  PIST  +G  AS G++LL+AG KGMR+ALPNA I +HQP GG  GQA++IE 
Sbjct: 96  DAMQIIPNPISTLAVGVTASFGTVLLAAGTKGMRYALPNATIHMHQPLGGAQGQATEIEI 155

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            A++I+++K RLN+I   + G+T E +++  +RD  M A +A ++G+VD ++
Sbjct: 156 QAKEILRLKARLNQILAAHTGQTVETIQRDTERDRYMDAHQAMEYGLVDHIM 207


>gi|88855134|ref|ZP_01129799.1| ATP-dependent Clp protease proteolytic subunit [marine
           actinobacterium PHSC20C1]
 gi|88815662|gb|EAR25519.1| ATP-dependent Clp protease proteolytic subunit [marine
           actinobacterium PHSC20C1]
          Length = 205

 Score =  181 bits (458), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 82/170 (48%), Positives = 122/170 (71%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           ++ +LLK+RI+++  ++ D  A  ICA++L L AE+P+++I LY+NSPGG +TAGMAIYD
Sbjct: 10  VFDQLLKDRIIWLGSEVRDSNANEICAKILLLAAEDPKRDIYLYVNSPGGSITAGMAIYD 69

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM+F+   I T  +G AASMG  LLS+G KG R+  PNAR+LLHQPSGGF G ++DI+  
Sbjct: 70  TMKFVPNDIVTVGIGLAASMGQFLLSSGTKGKRYITPNARVLLHQPSGGFGGTSADIQTQ 129

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           A  I+ +K+R+ E+  +  GK+ E+V    DRD+  +A +A ++G VD +
Sbjct: 130 AGVILDMKKRMAELTAEQTGKSVEQVLIDNDRDNWFTARQALEYGFVDHL 179


>gi|15841985|ref|NP_337022.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis CDC1551]
 gi|31793642|ref|NP_856135.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium bovis
           AF2122/97]
 gi|57116992|ref|YP_177883.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis H37Rv]
 gi|121638344|ref|YP_978568.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|148662296|ref|YP_001283819.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis H37Ra]
 gi|148823661|ref|YP_001288415.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis F11]
 gi|167969785|ref|ZP_02552062.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis H37Ra]
 gi|215404397|ref|ZP_03416578.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis 02_1987]
 gi|215412218|ref|ZP_03420980.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis 94_M4241A]
 gi|215427844|ref|ZP_03425763.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis T92]
 gi|215431407|ref|ZP_03429326.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis EAS054]
 gi|215446707|ref|ZP_03433459.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis T85]
 gi|218754193|ref|ZP_03532989.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis GM 1503]
 gi|219558458|ref|ZP_03537534.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis T17]
 gi|224990838|ref|YP_002645525.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|253798460|ref|YP_003031461.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis KZN 1435]
 gi|254232595|ref|ZP_04925922.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           (endopeptidase clp) [Mycobacterium tuberculosis C]
 gi|254365237|ref|ZP_04981283.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           (endopeptidase clp) [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254551509|ref|ZP_05141956.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260201586|ref|ZP_05769077.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis T46]
 gi|260205765|ref|ZP_05773256.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis K85]
 gi|289443987|ref|ZP_06433731.1| clp protease [Mycobacterium tuberculosis T46]
 gi|289553748|ref|ZP_06442958.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis KZN 605]
 gi|289570616|ref|ZP_06450843.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis T17]
 gi|289575155|ref|ZP_06455382.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis K85]
 gi|289746243|ref|ZP_06505621.1| ATP-dependent Clp protease proteolytic subunit 1 [Mycobacterium
           tuberculosis 02_1987]
 gi|289751067|ref|ZP_06510445.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis T92]
 gi|289754569|ref|ZP_06513947.1| Endopeptidase Clp 1 [Mycobacterium tuberculosis EAS054]
 gi|289758593|ref|ZP_06517971.1| endopeptidase Clp 1 [Mycobacterium tuberculosis T85]
 gi|289762630|ref|ZP_06522008.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           (endopeptidase clp) [Mycobacterium tuberculosis GM 1503]
 gi|294994431|ref|ZP_06800122.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis 210]
 gi|297635067|ref|ZP_06952847.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis KZN 4207]
 gi|297732058|ref|ZP_06961176.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis KZN R506]
 gi|298525939|ref|ZP_07013348.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306776731|ref|ZP_07415068.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis SUMu001]
 gi|306780504|ref|ZP_07418841.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis SUMu002]
 gi|306785256|ref|ZP_07423578.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis SUMu003]
 gi|306789615|ref|ZP_07427937.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis SUMu004]
 gi|306793942|ref|ZP_07432244.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis SUMu005]
 gi|306798336|ref|ZP_07436638.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis SUMu006]
 gi|306804212|ref|ZP_07440880.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis SUMu008]
 gi|306808782|ref|ZP_07445450.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis SUMu007]
 gi|306968614|ref|ZP_07481275.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis SUMu009]
 gi|306972841|ref|ZP_07485502.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis SUMu010]
 gi|307080547|ref|ZP_07489717.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis SUMu011]
 gi|313659394|ref|ZP_07816274.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis KZN V2475]
 gi|61221190|sp|P0A526|CLPP1_MYCTU RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|61221191|sp|P0A527|CLPP1_MYCBO RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|90109123|pdb|2CE3|A Chain A, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 gi|90109124|pdb|2CE3|B Chain B, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 gi|90109125|pdb|2CE3|C Chain C, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 gi|90109126|pdb|2CE3|D Chain D, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 gi|90109127|pdb|2CE3|E Chain E, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 gi|90109128|pdb|2CE3|F Chain F, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 gi|90109129|pdb|2CE3|G Chain G, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 gi|90109130|pdb|2CE3|H Chain H, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 gi|90109131|pdb|2CE3|I Chain I, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 gi|90109132|pdb|2CE3|J Chain J, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 gi|90109133|pdb|2CE3|K Chain K, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 gi|90109134|pdb|2CE3|L Chain L, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 gi|90109135|pdb|2CE3|M Chain M, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 gi|90109136|pdb|2CE3|N Chain N, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 gi|13882259|gb|AAK46836.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mycobacterium
           tuberculosis CDC1551]
 gi|31619235|emb|CAD97349.1| PROBABLE ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 1 CLPP1
           (ENDOPEPTIDASE CLP) [Mycobacterium bovis AF2122/97]
 gi|41353706|emb|CAE55492.1| PROBABLE ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 1 CLPP1
           (ENDOPEPTIDASE CLP) [Mycobacterium tuberculosis H37Rv]
 gi|121493992|emb|CAL72469.1| Probable atp-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|124601654|gb|EAY60664.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           (endopeptidase clp) [Mycobacterium tuberculosis C]
 gi|134150751|gb|EBA42796.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           (endopeptidase clp) [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148506448|gb|ABQ74257.1| ATP-dependent Clp protease proteolytic subunit ClpP1 [Mycobacterium
           tuberculosis H37Ra]
 gi|148722188|gb|ABR06813.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis F11]
 gi|224773951|dbj|BAH26757.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|253319963|gb|ACT24566.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis KZN 1435]
 gi|289416906|gb|EFD14146.1| clp protease [Mycobacterium tuberculosis T46]
 gi|289438380|gb|EFD20873.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis KZN 605]
 gi|289539586|gb|EFD44164.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis K85]
 gi|289544370|gb|EFD48018.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis T17]
 gi|289686771|gb|EFD54259.1| ATP-dependent Clp protease proteolytic subunit 1 [Mycobacterium
           tuberculosis 02_1987]
 gi|289691654|gb|EFD59083.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis T92]
 gi|289695156|gb|EFD62585.1| Endopeptidase Clp 1 [Mycobacterium tuberculosis EAS054]
 gi|289710136|gb|EFD74152.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           (endopeptidase clp) [Mycobacterium tuberculosis GM 1503]
 gi|289714157|gb|EFD78169.1| endopeptidase Clp 1 [Mycobacterium tuberculosis T85]
 gi|298495733|gb|EFI31027.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308214891|gb|EFO74290.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis SUMu001]
 gi|308326652|gb|EFP15503.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis SUMu002]
 gi|308330078|gb|EFP18929.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis SUMu003]
 gi|308333918|gb|EFP22769.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis SUMu004]
 gi|308337721|gb|EFP26572.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis SUMu005]
 gi|308341402|gb|EFP30253.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis SUMu006]
 gi|308344888|gb|EFP33739.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis SUMu007]
 gi|308349199|gb|EFP38050.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis SUMu008]
 gi|308353820|gb|EFP42671.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis SUMu009]
 gi|308357769|gb|EFP46620.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis SUMu010]
 gi|308361714|gb|EFP50565.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis SUMu011]
 gi|323718967|gb|EGB28117.1| ATP-dependent Clp protease proteolytic subunit 1 ClpP1
           [Mycobacterium tuberculosis CDC1551A]
 gi|326904075|gb|EGE51008.1| ATP-dependent Clp protease proteolytic subunit 1 ClpP1
           [Mycobacterium tuberculosis W-148]
 gi|328458228|gb|AEB03651.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis KZN 4207]
          Length = 200

 Score =  180 bits (457), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 84/171 (49%), Positives = 117/171 (68%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL ERI+F+  ++ D +A  +CAQ+L L AE+  K+ISLYINSPGG ++AGMAIYD
Sbjct: 20  VYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYD 79

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM      I+T+ MG AASMG  LL+AG KG R+ALP+ARIL+HQP GG +G A+DI   
Sbjct: 80  TMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQ 139

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+    IK+ +  +  +  G+  E +E   DRD   +A+EA ++G VD ++
Sbjct: 140 AEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHII 190


>gi|331695807|ref|YP_004332046.1| ATP-dependent Clp protease proteolytic subunit [Pseudonocardia
           dioxanivorans CB1190]
 gi|326950496|gb|AEA24193.1| ATP-dependent Clp protease proteolytic subunit [Pseudonocardia
           dioxanivorans CB1190]
          Length = 219

 Score =  180 bits (457), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 86/174 (49%), Positives = 120/174 (68%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           S  +Y RLL++RI+ +  Q++D +A  I AQ+L L AE+P  +I+LYINSPGG VTAGMA
Sbjct: 28  SDSVYERLLQQRIIVLGQQVDDDIANRIAAQMLLLSAEDPTADIALYINSPGGSVTAGMA 87

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           I+DTM+FI+  ++T+ MG AASMG  LLSAG +G R+ALP+ +IL+HQPS G  G  SDI
Sbjct: 88  IFDTMEFIECDVATYAMGLAASMGQFLLSAGTRGKRYALPHCQILMHQPSAGVGGTESDI 147

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
              A+   + KR + E+   + G+T E++    DRD   SA EA ++G VD V+
Sbjct: 148 AIQAELFRRHKREMAELIAGHTGQTVEKITADFDRDRWFSAQEALEYGFVDHVI 201


>gi|88192658|pdb|2CBY|A Chain A, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 gi|88192659|pdb|2CBY|B Chain B, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 gi|88192660|pdb|2CBY|C Chain C, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 gi|88192661|pdb|2CBY|D Chain D, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 gi|88192662|pdb|2CBY|E Chain E, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 gi|88192663|pdb|2CBY|F Chain F, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 gi|88192664|pdb|2CBY|G Chain G, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
          Length = 208

 Score =  180 bits (457), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 84/171 (49%), Positives = 117/171 (68%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL ERI+F+  ++ D +A  +CAQ+L L AE+  K+ISLYINSPGG ++AGMAIYD
Sbjct: 20  VYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYD 79

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM      I+T+ MG AASMG  LL+AG KG R+ALP+ARIL+HQP GG +G A+DI   
Sbjct: 80  TMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQ 139

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+    IK+ +  +  +  G+  E +E   DRD   +A+EA ++G VD ++
Sbjct: 140 AEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHII 190


>gi|308405118|ref|ZP_07494258.2| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis SUMu012]
 gi|308365324|gb|EFP54175.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis SUMu012]
          Length = 197

 Score =  180 bits (457), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 84/171 (49%), Positives = 117/171 (68%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL ERI+F+  ++ D +A  +CAQ+L L AE+  K+ISLYINSPGG ++AGMAIYD
Sbjct: 17  VYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYD 76

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM      I+T+ MG AASMG  LL+AG KG R+ALP+ARIL+HQP GG +G A+DI   
Sbjct: 77  TMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQ 136

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+    IK+ +  +  +  G+  E +E   DRD   +A+EA ++G VD ++
Sbjct: 137 AEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHII 187


>gi|305664459|ref|YP_003860746.1| Protease subunit of ATP-dependent Clp protease [Maribacter sp.
           HTCC2170]
 gi|88708476|gb|EAR00712.1| Protease subunit of ATP-dependent Clp protease [Maribacter sp.
           HTCC2170]
          Length = 182

 Score =  180 bits (456), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 86/180 (47%), Positives = 128/180 (71%), Gaps = 1/180 (0%)

Query: 26  TNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV 85
           + +G+    I  +LL+ER VF+ G ++D  A  +  +LL+L+ +N  KEI L+INSPGG 
Sbjct: 3   SKKGKVQEAIDEKLLEERKVFLWGMVDDDSAKHVIDRLLYLDMQN-NKEIQLFINSPGGY 61

Query: 86  VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS 145
           VT+G A+YDT++ +K P+ST C G AASMGS+LLS G+KG RF  P+A++++HQPSGG  
Sbjct: 62  VTSGFAMYDTIKSLKSPVSTICTGLAASMGSILLSVGKKGRRFIQPHAQVMIHQPSGGAR 121

Query: 146 GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           GQAS+IE  A++I+K K    +I   NCG+ ++ V +  DRD+ M+A E+ ++G+VD VL
Sbjct: 122 GQASNIEIQAKEIIKTKELSAQILADNCGQDFDTVMRDFDRDYWMNAEESIEYGIVDGVL 181


>gi|189462223|ref|ZP_03011008.1| hypothetical protein BACCOP_02906 [Bacteroides coprocola DSM 17136]
 gi|189431076|gb|EDV00061.1| hypothetical protein BACCOP_02906 [Bacteroides coprocola DSM 17136]
          Length = 223

 Score =  180 bits (456), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 86/188 (45%), Positives = 130/188 (69%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P ++E+        D++SRL+ +RI+F+  QI+D+ A  + AQLL+L++ +  K+IS+
Sbjct: 30  LNPYILEERQLNVTQLDVFSRLMMDRIIFLGTQIDDYTANTLQAQLLYLDSVDSGKDISI 89

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+ IYDTMQFI   ++T C G AASM ++LL AG +G R AL ++R+++
Sbjct: 90  YINSPGGSVYAGLGIYDTMQFISSDVATICTGMAASMAAVLLVAGAEGKRSALTHSRVMI 149

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I K+K+ L  I   +    +++V    DRD+ M+A EA +
Sbjct: 150 HQPMGGAQGQASDIEITAREIQKLKKELYTIISDHSHTEFDKVWADSDRDYWMTAQEAKE 209

Query: 198 WGVVDKVL 205
           +G++D+VL
Sbjct: 210 YGMIDEVL 217


>gi|309811146|ref|ZP_07704942.1| endopeptidase Clp [Dermacoccus sp. Ellin185]
 gi|308434876|gb|EFP58712.1| endopeptidase Clp [Dermacoccus sp. Ellin185]
          Length = 221

 Score =  180 bits (456), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 89/192 (46%), Positives = 137/192 (71%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T+ G +  D Y++L ++RI+F+  Q++D  A  I AQL+ LE+++P ++I +
Sbjct: 24  ILPQFEERTSYGTKRLDPYTKLFEDRIIFLGVQVDDASADDIIAQLIVLESQDPDRDIVM 83

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+I+P + TF +GQAAS  ++LL AG  G R+ALPNAR+L+
Sbjct: 84  YINSPGGSFTALTAIYDTMQYIRPDVHTFVLGQAASAAAVLLGAGAPGKRYALPNARVLI 143

Query: 138 HQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+  G  GQASD+E  A +I++++  L E   K+ G++ E+V   +DRD I++A  A 
Sbjct: 144 HQPAMEGSGGQASDVEIQANEIMRMREWLEETLAKHSGRSIEQVRADIDRDKILTAEMAK 203

Query: 197 DWGVVDKVLMSR 208
           ++G++D+VL SR
Sbjct: 204 EYGLIDEVLTSR 215


>gi|319953820|ref|YP_004165087.1| ATP-dependent clp protease proteolytic subunit clpp [Cellulophaga
           algicola DSM 14237]
 gi|319422480|gb|ADV49589.1| ATP-dependent Clp protease proteolytic subunit ClpP [Cellulophaga
           algicola DSM 14237]
          Length = 182

 Score =  180 bits (456), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 87/180 (48%), Positives = 125/180 (69%), Gaps = 1/180 (0%)

Query: 26  TNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV 85
           + +G+    I  ++L+ER VF+ G ++D  A  +  +LL+L+ +N  KEI LYINSPGG 
Sbjct: 3   SKKGKIQEAIDEKMLEERKVFLWGMVDDDSAKHVIDRLLYLDMQN-DKEIQLYINSPGGY 61

Query: 86  VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS 145
           VT+G A+YDT++ +K P+ST C G AASMGS+LLS G+KG RF  P+A++++HQPSGG  
Sbjct: 62  VTSGFAMYDTIKSLKSPVSTICTGLAASMGSILLSVGKKGRRFIQPHAQVMIHQPSGGAR 121

Query: 146 GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           GQAS+IE  A++I+K K     I   NCG+ Y+ V K  DRD+ M A E+  +G+VD +L
Sbjct: 122 GQASNIEIQAKEIIKTKELSARILADNCGQDYDRVMKDFDRDYWMGAEESIAYGIVDGIL 181


>gi|212690529|ref|ZP_03298657.1| hypothetical protein BACDOR_00011 [Bacteroides dorei DSM 17855]
 gi|237708014|ref|ZP_04538495.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacteroides sp.
           9_1_42FAA]
 gi|237725286|ref|ZP_04555767.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacteroides sp.
           D4]
 gi|265754199|ref|ZP_06089388.1| Clp protease [Bacteroides sp. 3_1_33FAA]
 gi|212666878|gb|EEB27450.1| hypothetical protein BACDOR_00011 [Bacteroides dorei DSM 17855]
 gi|229436552|gb|EEO46629.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacteroides dorei
           5_1_36/D4]
 gi|229458000|gb|EEO63721.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacteroides sp.
           9_1_42FAA]
 gi|263234908|gb|EEZ20463.1| Clp protease [Bacteroides sp. 3_1_33FAA]
          Length = 223

 Score =  180 bits (456), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 86/188 (45%), Positives = 129/188 (68%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P ++E+        D++SRL+ +RI+F+  QI+D+ A  + AQLL+L++    K+IS+
Sbjct: 29  LNPYILEERQLNVTQLDVFSRLMMDRIIFLGTQIDDYTANTLQAQLLYLDSVESGKDISI 88

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+ IYDTMQFI   ++T C G AASM ++LL AG +G R AL ++R+++
Sbjct: 89  YINSPGGSVYAGLGIYDTMQFINSDVATICTGMAASMAAVLLVAGTEGKRSALTHSRVMI 148

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I K+K+ L  I   +    +++V    DRD+ M+A EA +
Sbjct: 149 HQPMGGAQGQASDIEITAREIQKLKKELYTIIADHSHTDFDKVWADSDRDYWMTAQEAKE 208

Query: 198 WGVVDKVL 205
           +G++D+VL
Sbjct: 209 YGMIDEVL 216


>gi|126030155|pdb|2C8T|A Chain A, The 3.0 A Resolution Structure Of Caseinolytic Clp
           Protease 1 From Mycobacterium Tuberculosis
 gi|126030156|pdb|2C8T|B Chain B, The 3.0 A Resolution Structure Of Caseinolytic Clp
           Protease 1 From Mycobacterium Tuberculosis
 gi|126030157|pdb|2C8T|C Chain C, The 3.0 A Resolution Structure Of Caseinolytic Clp
           Protease 1 From Mycobacterium Tuberculosis
 gi|126030158|pdb|2C8T|D Chain D, The 3.0 A Resolution Structure Of Caseinolytic Clp
           Protease 1 From Mycobacterium Tuberculosis
 gi|126030159|pdb|2C8T|E Chain E, The 3.0 A Resolution Structure Of Caseinolytic Clp
           Protease 1 From Mycobacterium Tuberculosis
 gi|126030160|pdb|2C8T|F Chain F, The 3.0 A Resolution Structure Of Caseinolytic Clp
           Protease 1 From Mycobacterium Tuberculosis
 gi|126030161|pdb|2C8T|G Chain G, The 3.0 A Resolution Structure Of Caseinolytic Clp
           Protease 1 From Mycobacterium Tuberculosis
 gi|126030162|pdb|2C8T|H Chain H, The 3.0 A Resolution Structure Of Caseinolytic Clp
           Protease 1 From Mycobacterium Tuberculosis
 gi|126030163|pdb|2C8T|I Chain I, The 3.0 A Resolution Structure Of Caseinolytic Clp
           Protease 1 From Mycobacterium Tuberculosis
 gi|126030164|pdb|2C8T|J Chain J, The 3.0 A Resolution Structure Of Caseinolytic Clp
           Protease 1 From Mycobacterium Tuberculosis
 gi|126030165|pdb|2C8T|K Chain K, The 3.0 A Resolution Structure Of Caseinolytic Clp
           Protease 1 From Mycobacterium Tuberculosis
 gi|126030166|pdb|2C8T|L Chain L, The 3.0 A Resolution Structure Of Caseinolytic Clp
           Protease 1 From Mycobacterium Tuberculosis
 gi|126030167|pdb|2C8T|M Chain M, The 3.0 A Resolution Structure Of Caseinolytic Clp
           Protease 1 From Mycobacterium Tuberculosis
 gi|126030168|pdb|2C8T|N Chain N, The 3.0 A Resolution Structure Of Caseinolytic Clp
           Protease 1 From Mycobacterium Tuberculosis
          Length = 206

 Score =  180 bits (456), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 84/171 (49%), Positives = 117/171 (68%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL ERI+F+  ++ D +A  +CAQ+L L AE+  K+ISLYINSPGG ++AGMAIYD
Sbjct: 21  VYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYD 80

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM      I+T+ MG AASMG  LL+AG KG R+ALP+ARIL+HQP GG +G A+DI   
Sbjct: 81  TMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQ 140

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+    IK+ +  +  +  G+  E +E   DRD   +A+EA ++G VD ++
Sbjct: 141 AEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHII 191


>gi|150003037|ref|YP_001297781.1| ATP-dependent Clp protease proteolytic subunit [Bacteroides
           vulgatus ATCC 8482]
 gi|254883675|ref|ZP_05256385.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacteroides sp.
           4_3_47FAA]
 gi|294775661|ref|ZP_06741169.1| Clp protease [Bacteroides vulgatus PC510]
 gi|319642188|ref|ZP_07996848.1| ATP-dependent Clp protease proteolytic subunit [Bacteroides sp.
           3_1_40A]
 gi|149931461|gb|ABR38159.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacteroides
           vulgatus ATCC 8482]
 gi|254836468|gb|EET16777.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacteroides sp.
           4_3_47FAA]
 gi|294450505|gb|EFG18997.1| Clp protease [Bacteroides vulgatus PC510]
 gi|317386174|gb|EFV67093.1| ATP-dependent Clp protease proteolytic subunit [Bacteroides sp.
           3_1_40A]
          Length = 223

 Score =  180 bits (456), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 86/188 (45%), Positives = 129/188 (68%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P ++E+        D++SRL+ +RI+F+  QI+D+ A  + AQLL+L++    K+IS+
Sbjct: 29  LNPYILEERQLNVTQLDVFSRLMMDRIIFLGTQIDDYTANTLQAQLLYLDSVESGKDISI 88

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+ IYDTMQFI   ++T C G AASM ++LL AG +G R AL ++R+++
Sbjct: 89  YINSPGGSVYAGLGIYDTMQFINSDVATICTGMAASMAAVLLVAGTEGKRSALTHSRVMI 148

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I K+K+ L  I   +    +++V    DRD+ M+A EA +
Sbjct: 149 HQPMGGAQGQASDIEITAREIQKLKKELYTIIADHSHTDFDKVWADSDRDYWMTAQEAKE 208

Query: 198 WGVVDKVL 205
           +G++D+VL
Sbjct: 209 YGMIDEVL 216


>gi|116670950|ref|YP_831883.1| ATP-dependent Clp protease proteolytic subunit [Arthrobacter sp.
           FB24]
 gi|116611059|gb|ABK03783.1| ATP-dependent Clp protease proteolytic subunit ClpP [Arthrobacter
           sp. FB24]
          Length = 226

 Score =  180 bits (456), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 92/193 (47%), Positives = 138/193 (71%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++RI+F+  Q++D  A  + AQLL LE+ +P ++I+L
Sbjct: 25  VLPQFEERTPYGFKRQDPYTKLFEDRIIFLGVQVDDASADDVMAQLLVLESTDPDRDITL 84

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+I+P I T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 85  YINSPGGSFTAMTAIYDTMQYIRPEIQTVCLGQAASAAAVLLAAGTPGKRLALPNARVLI 144

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASD+E  A ++++++  L +   K+ G+T E+V   ++RD I++A+EA
Sbjct: 145 HQPALSGGQGGQASDLEIQAAEVMRMRSWLEDTLAKHSGRTSEQVNNDIERDKILTAAEA 204

Query: 196 CDWGVVDKVLMSR 208
             +G++D+VL SR
Sbjct: 205 QSYGLIDQVLDSR 217


>gi|294629345|ref|ZP_06707905.1| Clp protease [Streptomyces sp. e14]
 gi|292832678|gb|EFF91027.1| Clp protease [Streptomyces sp. e14]
          Length = 226

 Score =  180 bits (456), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 91/192 (47%), Positives = 139/192 (72%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T++G R YD Y++L +ER++F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 27  VIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISV 86

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQF+KP I T CMGQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 87  YINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNARVLI 146

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP S    GQ SD+E  A +I++++ +L E+  K+     E++ + ++RD I++A EA 
Sbjct: 147 HQPYSETGRGQVSDLEIAANEILRMRSQLEEMLAKHSTTPVEKIREDIERDKILTAEEAL 206

Query: 197 DWGVVDKVLMSR 208
           ++G++D+++ +R
Sbjct: 207 EYGLIDQIISTR 218


>gi|297194374|ref|ZP_06911772.1| ATP-dependent Clp protease proteolytic subunit 1 [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197720968|gb|EDY64876.1| ATP-dependent Clp protease proteolytic subunit 1 [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 205

 Score =  180 bits (456), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 86/171 (50%), Positives = 120/171 (70%), Gaps = 1/171 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +YSRLL ERI+F+  Q++D +A  I AQ+L L A+ P K+I LYINSPGG VTAGMA+YD
Sbjct: 22  VYSRLLGERIIFLGQQVDDDIANKITAQMLLLAAD-PDKDIYLYINSPGGSVTAGMAVYD 80

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ+I   + T  MG AASMG  LL+ G  G RFALPN  IL+HQ S G  G ASDI+  
Sbjct: 81  TMQYIPNDVVTIGMGMAASMGQFLLTGGAAGKRFALPNTDILMHQGSAGLGGTASDIKIQ 140

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+ +++ K+R+ EI  ++ G+T E + +  DRD   +A EA ++G++D+++
Sbjct: 141 AEYLLRTKKRMAEITAQHSGQTVETIIRDGDRDRWFTADEAKEYGLIDEII 191


>gi|254821428|ref|ZP_05226429.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           intracellulare ATCC 13950]
          Length = 199

 Score =  179 bits (455), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 84/171 (49%), Positives = 117/171 (68%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL ERI+F+  ++ D +A  +CAQ+L L AE+  K+ISLYINSPGG ++AGMAIYD
Sbjct: 17  VYERLLSERIIFLGSEVSDEIANRLCAQILLLAAEDSTKDISLYINSPGGSISAGMAIYD 76

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM      I+T+ MG AASMG  LL+AG KG R+ALP+ARIL+HQP GG +G A+DI   
Sbjct: 77  TMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQ 136

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+    IK+ +  +  +  G++ E +E   DRD   +A EA ++G VD ++
Sbjct: 137 AEQFHVIKKEMFRLNAEFTGQSIERIEADSDRDRWFTAQEALEYGFVDHII 187


>gi|149371988|ref|ZP_01891307.1| ATP-dependent Clp protease proteolytic subunit [unidentified
           eubacterium SCB49]
 gi|149355128|gb|EDM43689.1| ATP-dependent Clp protease proteolytic subunit [unidentified
           eubacterium SCB49]
          Length = 183

 Score =  179 bits (455), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 85/171 (49%), Positives = 123/171 (71%), Gaps = 1/171 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I ++ L +R +F+ GQ++D  A  +  +L++L++ +  +EI LYINSPGG VT+G ++YD
Sbjct: 13  IENQQLDDRTIFLWGQVDDRSAKHVVDRLMYLDSIS-NEEIKLYINSPGGYVTSGFSMYD 71

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           T++ IK P+ST C G AASMGS+LLS GEKG RF  P+AR+++HQPSGG  GQASDIE  
Sbjct: 72  TIKSIKSPVSTICTGLAASMGSILLSVGEKGRRFIQPHARVMIHQPSGGARGQASDIEIT 131

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           AQ+I+K K    +I   NCG+ +++V K   RDH MSA E+  +G+VD ++
Sbjct: 132 AQEILKTKEISAKILADNCGQDFDKVMKDFQRDHWMSAEESVAYGIVDGIM 182


>gi|295132831|ref|YP_003583507.1| ATP-dependent Clp protease proteolytic subunit [Zunongwangia
           profunda SM-A87]
 gi|294980846|gb|ADF51311.1| ATP-dependent Clp protease proteolytic subunit [Zunongwangia
           profunda SM-A87]
          Length = 182

 Score =  179 bits (454), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 87/171 (50%), Positives = 122/171 (71%), Gaps = 1/171 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I ++ L ER +F+ G ++D  A  +  +L++L+ E  ++EI LYINSPGG VT G AIYD
Sbjct: 12  IDAKFLDERKIFMWGPVDDKSAKHVIDRLIYLDLEG-KEEIQLYINSPGGYVTDGFAIYD 70

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           T+Q I  P+ST C G AASMGS+LLSAG+KG RF  P+A++++HQPSGG  GQAS+IE  
Sbjct: 71  TIQAIDAPVSTICTGLAASMGSILLSAGKKGRRFIQPHAKVMIHQPSGGARGQASNIEIQ 130

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A +I+K K    +I  +NCG+T E+V K  +RD+ M A E+ D+G+VD +L
Sbjct: 131 ATEILKTKELSAKILAENCGQTVEKVMKDFNRDYWMDAKESLDYGIVDAIL 181


>gi|15827778|ref|NP_302041.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           leprae TN]
 gi|221230255|ref|YP_002503671.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           leprae Br4923]
 gi|13093330|emb|CAC30430.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           leprae]
 gi|219933362|emb|CAR71574.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           leprae Br4923]
          Length = 224

 Score =  179 bits (454), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 84/171 (49%), Positives = 118/171 (69%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL ERI+F+  ++ D++A  +CAQ+L L AE+  K+ISLYINSPGG ++AGMAIYD
Sbjct: 44  VYERLLSERIIFLGSEVNDNIANRLCAQILLLAAEDAFKDISLYINSPGGSISAGMAIYD 103

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM      I+T+ MG AASMG  LL+AG +G R+ALP+ARIL+HQP GG +G A+DI   
Sbjct: 104 TMVLAPCDIATYAMGMAASMGEFLLAAGTRGKRYALPHARILMHQPLGGVTGSAADIAIQ 163

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+    IK+ +  +  +  G+  E +E   DRD   +ASEA ++G VD ++
Sbjct: 164 AEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTASEALEYGFVDHII 214


>gi|18281939|sp|Q9CBY3|CLPP1_MYCLE RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
          Length = 200

 Score =  179 bits (454), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 84/171 (49%), Positives = 118/171 (69%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL ERI+F+  ++ D++A  +CAQ+L L AE+  K+ISLYINSPGG ++AGMAIYD
Sbjct: 20  VYERLLSERIIFLGSEVNDNIANRLCAQILLLAAEDAFKDISLYINSPGGSISAGMAIYD 79

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM      I+T+ MG AASMG  LL+AG +G R+ALP+ARIL+HQP GG +G A+DI   
Sbjct: 80  TMVLAPCDIATYAMGMAASMGEFLLAAGTRGKRYALPHARILMHQPLGGVTGSAADIAIQ 139

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+    IK+ +  +  +  G+  E +E   DRD   +ASEA ++G VD ++
Sbjct: 140 AEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTASEALEYGFVDHII 190


>gi|302545417|ref|ZP_07297759.1| Clp protease [Streptomyces hygroscopicus ATCC 53653]
 gi|302463035|gb|EFL26128.1| Clp protease [Streptomyces himastatinicus ATCC 53653]
          Length = 223

 Score =  179 bits (454), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 93/192 (48%), Positives = 138/192 (71%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP  VE+T++G R YD Y++L +ER++F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 25  VVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISV 84

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQF+KP I T CMGQAAS  ++LL+AG  G R ALPNARIL+
Sbjct: 85  YINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARILI 144

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP S    GQ SD+E  A +I++++ +L E+  K+     E++   ++RD I++A E+ 
Sbjct: 145 HQPYSETGRGQVSDLEIAANEILRMRSQLEEMLAKHSTTPIEKIRDDIERDKILTAEESL 204

Query: 197 DWGVVDKVLMSR 208
           ++G+VD+++ +R
Sbjct: 205 EYGLVDQIVSTR 216


>gi|269125774|ref|YP_003299144.1| endopeptidase Clp [Thermomonospora curvata DSM 43183]
 gi|268310732|gb|ACY97106.1| Endopeptidase Clp [Thermomonospora curvata DSM 43183]
          Length = 223

 Score =  179 bits (454), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 94/192 (48%), Positives = 139/192 (72%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T  G +  + Y++L +ERI+F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 23  IIPSFVERTTYGVKEMNPYNKLFEERIIFLGVQIDDASANDVMAQLLTLESIDPDRDISM 82

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA MAIYDTMQ+++P I T C+GQAAS  ++LL+AG  G R ALPN+RIL+
Sbjct: 83  YINSPGGSFTAMMAIYDTMQYVRPDIQTVCIGQAASAAAVLLAAGTPGKRAALPNSRILI 142

Query: 138 HQPSG-GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+  G  GQ+SDIE  A++I++I+  L EI  ++ G+  E+V K ++RD I++A +A 
Sbjct: 143 HQPATEGTYGQSSDIEIQAREIMRIRELLEEIISRHSGQPIEKVRKDIERDKILTAEDAK 202

Query: 197 DWGVVDKVLMSR 208
            +G+VD V +SR
Sbjct: 203 AYGLVDDVFVSR 214


>gi|307324651|ref|ZP_07603857.1| Endopeptidase Clp [Streptomyces violaceusniger Tu 4113]
 gi|306889533|gb|EFN20513.1| Endopeptidase Clp [Streptomyces violaceusniger Tu 4113]
          Length = 220

 Score =  179 bits (454), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 84/177 (47%), Positives = 123/177 (69%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           + S+LL +RIVF+  Q+++  A  +CAQ+L L AE+P+ +ISLYINSPGG VTAG+AIYD
Sbjct: 33  LASQLLTQRIVFLGTQVDEVSANRVCAQMLLLSAEDPRSDISLYINSPGGSVTAGLAIYD 92

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM+ I   +ST  MG AASMG  LL+ G  G R+ALPN+RI++HQPS G  G  +DI   
Sbjct: 93  TMRLIPNDVSTLTMGFAASMGQFLLTVGATGKRYALPNSRIMMHQPSAGIGGSTADIAIQ 152

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           A+++  +KR +  I  ++ G++ E + +  DRD   +A +A ++G+VD+VL S  D+
Sbjct: 153 AENLEFMKRSIERITAEHTGQSVETISRDGDRDRWFTAEQAKEYGMVDRVLESLADV 209


>gi|238060618|ref|ZP_04605327.1| endopeptidase Clp [Micromonospora sp. ATCC 39149]
 gi|237882429|gb|EEP71257.1| endopeptidase Clp [Micromonospora sp. ATCC 39149]
          Length = 217

 Score =  179 bits (454), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 91/193 (47%), Positives = 141/193 (73%), Gaps = 3/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T+ G +  + Y++L ++RI+F+  Q++D  A  + AQLL LE  +P ++I +
Sbjct: 15  VLPSFVERTSYGVKESNPYNKLFEDRIIFLGVQVDDASANDVMAQLLTLEGTDPDRDIIM 74

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+++P IST C+GQAAS  ++LL+AG  G R ALPN+RI++
Sbjct: 75  YINSPGGSFTAMTAIYDTMQYVRPDISTVCLGQAASAAAVLLAAGTPGKRMALPNSRIII 134

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+  GG+ GQ SDIE  A++I++++ +L E+  ++C +  E+V K +DRD IM+A E+
Sbjct: 135 HQPATEGGY-GQGSDIEIQAREILRMRTQLEEMLSRHCNQPVEKVRKDIDRDKIMTAEES 193

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD +L SR
Sbjct: 194 REYGLVDTILTSR 206


>gi|118618992|ref|YP_907324.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           ulcerans Agy99]
 gi|183983782|ref|YP_001852073.1| ATP-dependent Clp protease proteolytic subunit ClpP1 [Mycobacterium
           marinum M]
 gi|118571102|gb|ABL05853.1| ATP-dependent CLP protease proteolytic subunit 1 ClpP1
           [Mycobacterium ulcerans Agy99]
 gi|183177108|gb|ACC42218.1| ATP-dependent CLP protease proteolytic subunit 1 ClpP1
           [Mycobacterium marinum M]
          Length = 198

 Score =  179 bits (454), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 83/171 (48%), Positives = 117/171 (68%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL ERI+F+  ++ D +A  +CAQ+L L AE+  K+I+LYINSPGG ++AGMAIYD
Sbjct: 17  VYERLLSERIIFLGSEVNDEVANRLCAQILLLAAEDASKDINLYINSPGGSISAGMAIYD 76

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM      I+T+ MG AASMG  LL+AG KG R+ALP+ARIL+HQP GG +G A+DI   
Sbjct: 77  TMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQ 136

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+    IK+ +  +  +  G++ E +E   DRD   +A EA ++G VD ++
Sbjct: 137 AEQFAVIKKEMFRLNAEFTGQSIERIEADSDRDRWFTAPEALEYGFVDHII 187


>gi|296170471|ref|ZP_06852059.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295894942|gb|EFG74663.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 199

 Score =  179 bits (454), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 84/171 (49%), Positives = 117/171 (68%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL ERI+F+  ++ D +A  +CAQ+L L AE+  K+ISLYINSPGG ++AGMAIYD
Sbjct: 17  VYERLLSERIIFLGSEVNDEVANRLCAQILLLAAEDADKDISLYINSPGGSISAGMAIYD 76

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM      I+T+ MG AASMG  LL+AG KG R+ALP+ARIL+HQP GG +G A+DI   
Sbjct: 77  TMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQ 136

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+    IK+ +  +  +  G++ E +E   DRD   +A EA ++G VD ++
Sbjct: 137 AEQFHVIKKEMFRLNAEFTGQSIERIEADSDRDRWFTAQEALEYGFVDHII 187


>gi|163841992|ref|YP_001626397.1| ATP-dependent Clp protease proteolytic subunit [Renibacterium
           salmoninarum ATCC 33209]
 gi|162955468|gb|ABY24983.1| ATP-dependent endopeptidase clp proteolytic subunit [Renibacterium
           salmoninarum ATCC 33209]
          Length = 227

 Score =  179 bits (453), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 92/193 (47%), Positives = 137/193 (70%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++RI+F+  Q++D  A  I AQLL LE+ +P ++I+L
Sbjct: 26  ILPQFEERTPYGFKRQDPYTKLFEDRIIFLGVQVDDASADDIMAQLLVLESTDPDRDITL 85

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+I+P I T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 86  YINSPGGSFTAMTAIYDTMQYIRPEIQTVCLGQAASAAAVLLAAGTPGKRLALPNARVLI 145

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASD+E  A ++++++  L +    + G T E++   ++RD I++A+EA
Sbjct: 146 HQPALSGGQGGQASDLEIQANEVMRMRSWLEDTLAMHSGLTPEQLNNDIERDKILTAAEA 205

Query: 196 CDWGVVDKVLMSR 208
            D+G++D+VL SR
Sbjct: 206 LDYGLIDQVLESR 218


>gi|224179483|ref|YP_002601006.1| proteolytic subunit 2 of clp protease [Monomastix sp. OKE-1]
 gi|217314526|gb|ACK36869.1| proteolytic subunit 2 of clp protease [Monomastix sp. OKE-1]
          Length = 201

 Score =  179 bits (453), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 76/174 (43%), Positives = 124/174 (71%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+   ++D +A  +   +++L AE+  K I +YINSPGG VT G+A+Y
Sbjct: 22  DLYNRLYRERVLFLGSDLDDELANQLVGIMIYLSAEDESKRIFIYINSPGGSVTCGLAVY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M  I+  ++T C+G AASM S +L+ GE+G R ALP++R+++HQP GG  GQASD+  
Sbjct: 82  DAMHHIQARVTTLCIGIAASMASFVLAGGERGHRIALPHSRVMIHQPQGGSQGQASDVTA 141

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
            A+++++I+R++  IY +  G++   + K++DRD  MSA EA ++G+VD+V  S
Sbjct: 142 EAEEVMRIRRQIGRIYAERTGQSLATIAKSMDRDRFMSAKEAKEFGLVDQVASS 195


>gi|296123571|ref|YP_003631349.1| endopeptidase Clp [Planctomyces limnophilus DSM 3776]
 gi|296015911|gb|ADG69150.1| Endopeptidase Clp [Planctomyces limnophilus DSM 3776]
          Length = 227

 Score =  179 bits (453), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 84/176 (47%), Positives = 123/176 (69%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           +R   +   LL+ RI+F+ G I D  A LI  +LLFL+AEN  ++I  Y+NSPGG VTA 
Sbjct: 23  QRQMGLGDLLLENRIIFLDGPIHDASANLIVMKLLFLQAENRHQDIHFYVNSPGGSVTAT 82

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
           MAIYDTMQF++  I+T+C+G AAS G+++L+ G KG R+ LP+ ++++HQP G   GQ S
Sbjct: 83  MAIYDTMQFLQCDIATYCVGLAASGGAIVLAGGTKGKRYCLPHGKVMIHQPYGEVGGQVS 142

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           DIE  A+DI+  +R LNEI   +C +  E + +  +RD+ M+A +A D+G+VD+VL
Sbjct: 143 DIEIQARDILDTRRVLNEILAHHCNQPIEIIARDTERDYYMNAYQAKDYGIVDEVL 198


>gi|319947980|ref|ZP_08022157.1| ATP-dependent Clp protease proteolytic subunit [Dietzia cinnamea
           P4]
 gi|319438326|gb|EFV93269.1| ATP-dependent Clp protease proteolytic subunit [Dietzia cinnamea
           P4]
          Length = 207

 Score =  179 bits (453), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 88/192 (45%), Positives = 135/192 (70%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE ++ G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE ++P ++I++
Sbjct: 10  ILPSFVEHSSYGVKESNPYNKLFEERIIFLGTQVDDASANDIMAQLLVLEGQDPDRDITM 69

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++P + T C+GQAAS  ++LL+AG KG R ALPNARIL+
Sbjct: 70  YINSPGGSFTSLMAIYDTMQYVRPDVVTVCLGQAASAAAVLLAAGTKGKRAALPNARILI 129

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP +GG  GQ SD+E  A +I +++R +     ++ G+  +++ K  DRD I++A EA 
Sbjct: 130 HQPATGGIQGQVSDLEIQAAEIERMRRLMETTLARHTGRDADQIRKDTDRDKILTAEEAK 189

Query: 197 DWGVVDKVLMSR 208
           D+G++D V   R
Sbjct: 190 DYGIIDTVFDYR 201


>gi|108773366|ref|YP_635828.1| ATP-dependent Clp protease proteolytic subunit [Oltmannsiellopsis
           viridis]
 gi|122195154|sp|Q20F17|CLPP_OLTVI RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|82541948|gb|ABB81989.1| proteolytic subunit 2 of clp protease [Oltmannsiellopsis viridis]
          Length = 195

 Score =  179 bits (453), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 76/174 (43%), Positives = 124/174 (71%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+   ++D +A  +   +L+L AE   K++ +YINSPGG VT G+A+Y
Sbjct: 22  DLYNRLYRERVLFLCQDLDDELANQLIGIMLYLNAEEKSKDLYIYINSPGGSVTCGIAVY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           DTM +IK  ++T C+G AASM S +L+ G +G R ALP++RI++HQP GG  GQAS++  
Sbjct: 82  DTMNYIKADVTTICVGTAASMASFVLAGGTQGKRIALPHSRIMIHQPEGGSRGQASEVLS 141

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
            ++++++I+R++ +IY +  G+    + + LDRD  +SA EA D+G+VD+V  S
Sbjct: 142 ESEEVMRIRRQVGKIYAQRTGQPLRRISRDLDRDQFLSAREAKDYGIVDQVATS 195


>gi|86741463|ref|YP_481863.1| ATP-dependent Clp protease proteolytic subunit [Frankia sp. CcI3]
 gi|108935918|sp|Q2J9A8|CLPP4_FRASC RecName: Full=ATP-dependent Clp protease proteolytic subunit 4;
           AltName: Full=Endopeptidase Clp 4
 gi|86568325|gb|ABD12134.1| ATP-dependent Clp protease proteolytic subunit ClpP / ClpP1
           peptidase. Serine peptidase. MEROPS family S14 [Frankia
           sp. CcI3]
          Length = 238

 Score =  178 bits (452), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 85/172 (49%), Positives = 118/172 (68%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           ++SRLL+ RIVF+   +ED +A  I A+LL L AE+P  +I LYINSPGG V+AGMAIYD
Sbjct: 35  VFSRLLENRIVFLGSVVEDAVANAISAKLLLLAAEDPAADIYLYINSPGGSVSAGMAIYD 94

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ++   ++T  +G A SMG  LL AG  G R+ALP+ARI++HQP GG  G A+DI   
Sbjct: 95  TMQYVGNDVATVALGLAGSMGQFLLCAGTAGKRYALPHARIMMHQPHGGIGGTAADISIQ 154

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           A+ ++  KR L E    + G+T E++E   DRD   +A EA ++G+VD V++
Sbjct: 155 AEQMLYTKRTLQERIAFHTGQTVEQIETDSDRDRWFTAEEAKEYGLVDHVVV 206


>gi|239932976|ref|ZP_04689929.1| ATP-dependent Clp protease proteolytic subunit 1 [Streptomyces
           ghanaensis ATCC 14672]
 gi|291441329|ref|ZP_06580719.1| ATP-dependent Clp protease proteolytic subunit 3 [Streptomyces
           ghanaensis ATCC 14672]
 gi|291344224|gb|EFE71180.1| ATP-dependent Clp protease proteolytic subunit 3 [Streptomyces
           ghanaensis ATCC 14672]
          Length = 218

 Score =  178 bits (452), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 86/177 (48%), Positives = 120/177 (67%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +  RLL +RIV +  Q+++  A  +CAQLL L AE+P+ +ISLY+NSPGG V AG+AIYD
Sbjct: 30  LADRLLAQRIVLLGTQVDEVSANRVCAQLLILSAEDPRTDISLYVNSPGGSVHAGLAIYD 89

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM+ I   +ST  MG AASMG  LLS G  G R+ALPNARI++HQPS G  G  +DIE  
Sbjct: 90  TMRLIPNDVSTLAMGFAASMGQFLLSVGTAGKRYALPNARIMMHQPSAGIGGTTADIEIQ 149

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           A+++   KR +  I  ++ G++ E V +  DRD   +A EA ++G+VD+V+ S  D+
Sbjct: 150 AENLEFTKRTIERITAEHTGQSPETVSRDGDRDRWFTAEEAREYGMVDRVVESLADV 206


>gi|226307301|ref|YP_002767261.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rhodococcus
           erythropolis PR4]
 gi|229493206|ref|ZP_04386998.1| Clp protease [Rhodococcus erythropolis SK121]
 gi|226186418|dbj|BAH34522.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rhodococcus
           erythropolis PR4]
 gi|229319937|gb|EEN85766.1| Clp protease [Rhodococcus erythropolis SK121]
          Length = 220

 Score =  178 bits (452), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 89/192 (46%), Positives = 134/192 (69%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   EQT+ G ++ D Y++L +ERI+F+  Q++D  A  + AQLL LE+++P ++I++
Sbjct: 23  ILPQFTEQTSYGVKTSDPYNKLFEERIIFLGSQVDDVSANDLMAQLLVLESQDPDRDITM 82

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA MAIYDTMQ+++  IST C+GQAAS  ++LL+ G  G RFALPN+RIL+
Sbjct: 83  YINSPGGSFTALMAIYDTMQYVRADISTVCLGQAASAAAVLLAGGTPGKRFALPNSRILI 142

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP +GG  GQ SD+E  A +I +++R +      + GK  E +    DRD I++A +A 
Sbjct: 143 HQPATGGIQGQVSDLEIQAAEIERMRRLMESTLSLHTGKDPETIRVDTDRDKILTAEQAK 202

Query: 197 DWGVVDKVLMSR 208
           ++G++D VL  R
Sbjct: 203 EYGIIDDVLAYR 214


>gi|291455391|ref|ZP_06594781.1| ATP-dependent Clp protease proteolytic subunit 1 [Streptomyces
           albus J1074]
 gi|291358340|gb|EFE85242.1| ATP-dependent Clp protease proteolytic subunit 1 [Streptomyces
           albus J1074]
          Length = 216

 Score =  178 bits (452), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 85/181 (46%), Positives = 123/181 (67%), Gaps = 2/181 (1%)

Query: 33  YD--IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGM 90
           YD  +  +LL +RIV +  Q+++  A  +CAQLL L AE+P+ +ISLYINSPGG VTAG+
Sbjct: 25  YDDQLAGQLLTQRIVLLGTQVDETSANRVCAQLLLLSAEDPRTDISLYINSPGGSVTAGL 84

Query: 91  AIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASD 150
           AIYDTM+ I   +ST  MG AASMG  LL+ G  G RFALPNARI++HQPS G  G A+D
Sbjct: 85  AIYDTMRLIPNDVSTLAMGFAASMGQFLLTVGTAGKRFALPNARIMMHQPSAGIGGSAAD 144

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           I   A+++   KR +  +  ++ G++  E+ +  DRD   +A +A ++G+VD+V+ +  D
Sbjct: 145 IAIQAENLEFTKRAIERLTAEHTGRSEAEISRDSDRDRWFTAEQAKEYGMVDRVVHTLDD 204

Query: 211 I 211
           +
Sbjct: 205 V 205


>gi|300780630|ref|ZP_07090485.1| endopeptidase Clp [Corynebacterium genitalium ATCC 33030]
 gi|300533616|gb|EFK54676.1| endopeptidase Clp [Corynebacterium genitalium ATCC 33030]
          Length = 206

 Score =  178 bits (452), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 87/192 (45%), Positives = 138/192 (71%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +EQ++ G +  + YS+L +ERI+F+  Q++D  A  I AQLL LE+++P ++I++
Sbjct: 11  VLPSFIEQSSYGTKETNPYSKLFEERIIFLGTQVDDTSANDIMAQLLVLESQDPDRDITM 70

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++P + T C+GQAAS  +++L+AG  G R ALPN+R+L+
Sbjct: 71  YINSPGGSFTSLMAIYDTMQYVRPDVQTVCLGQAASAAAVILAAGAPGKRAALPNSRVLI 130

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP + G  GQ SD+E  AQ+I +++R + E   ++ G+T E+V    DRD I++A EA 
Sbjct: 131 HQPATQGTQGQVSDLEIQAQEIERMRRLMEETLARHSGRTAEQVRIDTDRDKILTAEEAV 190

Query: 197 DWGVVDKVLMSR 208
           ++G++D+V   R
Sbjct: 191 EYGIIDQVFDYR 202


>gi|310790485|gb|EFQ26018.1| ATP-dependent Clp protease proteolytic subunit [Glomerella
           graminicola M1.001]
          Length = 248

 Score =  178 bits (452), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 86/188 (45%), Positives = 133/188 (70%), Gaps = 9/188 (4%)

Query: 36  YSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDT 95
           Y   + ERIV + G I+D ++  I AQLL+LE+++P K I++YINSPGG V++G+AIYDT
Sbjct: 51  YITEVSERIVCLNGAIDDTVSASIVAQLLWLESDSPDKAITMYINSPGGSVSSGLAIYDT 110

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           M +IK P+ST C+G A+SM +LLL+ GE G R+ALP++ +++HQP GG  GQASDI  +A
Sbjct: 111 MTYIKSPVSTVCLGAASSMAALLLTGGEAGKRYALPHSSVMIHQPLGGTQGQASDILIYA 170

Query: 156 QDIVKIKRRLNEIYVKNCGKTY-------EEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
             I +I++++NEI  ++  K++       EE+   ++RD  ++A EA + GV+D++L  R
Sbjct: 171 NQIQRIRKQINEIMKRHINKSFGQEKYSLEEIHDMMERDKYLTAEEAKEIGVIDEILTRR 230

Query: 209 --IDIEEK 214
              D++EK
Sbjct: 231 EEKDLKEK 238


>gi|294812618|ref|ZP_06771261.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           clavuligerus ATCC 27064]
 gi|326440934|ref|ZP_08215668.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           clavuligerus ATCC 27064]
 gi|294325217|gb|EFG06860.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           clavuligerus ATCC 27064]
          Length = 200

 Score =  178 bits (452), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 87/189 (46%), Positives = 128/189 (67%), Gaps = 1/189 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P +  + + G     +YSRLL ERI+F+  Q++D +A  I AQ+L L A +P+K+I LY
Sbjct: 1   MPYLAGEPSLGGLGDQVYSRLLGERIIFLGQQVDDDIANKITAQMLLLAA-DPEKDIFLY 59

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAGMA+YDTMQ+I   + T  MG AASMG  LL+ G  G RFALP+  IL+H
Sbjct: 60  INSPGGSVTAGMAVYDTMQYIPNDVVTIGMGMAASMGQFLLTGGTPGKRFALPHTDILMH 119

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           Q S G  G ASDI+  A+ +++ K+R+ EI  ++ G+T E + +  DRD   +A EA ++
Sbjct: 120 QGSAGLGGTASDIKIQAEYLLRTKQRMAEITARHSGQTVEAIIRDGDRDRWFTAEEAREY 179

Query: 199 GVVDKVLMS 207
           G++D+++ +
Sbjct: 180 GLIDEIITA 188


>gi|312891186|ref|ZP_07750708.1| Endopeptidase Clp [Mucilaginibacter paludis DSM 18603]
 gi|311296353|gb|EFQ73500.1| Endopeptidase Clp [Mucilaginibacter paludis DSM 18603]
          Length = 230

 Score =  178 bits (451), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 82/188 (43%), Positives = 128/188 (68%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           + P + E+        D++SRL+ +RI+F+   ++D +A +I AQLLFL++ + +K+I L
Sbjct: 39  MTPYITEERQLNVAQMDVFSRLMMDRIIFLGEAVDDKIANIIQAQLLFLQSVDAKKDIQL 98

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG V AG+ IYDTMQ I P ++T C+G A S G++LL AG  G R AL ++R+++
Sbjct: 99  YVNSPGGSVYAGLGIYDTMQLIGPDVATICIGMALSFGAVLLCAGAAGKRAALKHSRVMI 158

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A+ ++ +K+ L  I  K+  + Y+ V    DRD+ M+A+EA  
Sbjct: 159 HQPLGGVQGQASDIEITARQVLILKKELYNIISKHSKQDYQTVHDASDRDYWMTATEAKA 218

Query: 198 WGVVDKVL 205
           +G++D++L
Sbjct: 219 FGMIDEIL 226


>gi|254392448|ref|ZP_05007629.1| ATP-dependent Clp protease proteolytic subunit 1 [Streptomyces
           clavuligerus ATCC 27064]
 gi|197706116|gb|EDY51928.1| ATP-dependent Clp protease proteolytic subunit 1 [Streptomyces
           clavuligerus ATCC 27064]
          Length = 204

 Score =  178 bits (451), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 87/189 (46%), Positives = 128/189 (67%), Gaps = 1/189 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P +  + + G     +YSRLL ERI+F+  Q++D +A  I AQ+L L A+ P+K+I LY
Sbjct: 5   MPYLAGEPSLGGLGDQVYSRLLGERIIFLGQQVDDDIANKITAQMLLLAAD-PEKDIFLY 63

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAGMA+YDTMQ+I   + T  MG AASMG  LL+ G  G RFALP+  IL+H
Sbjct: 64  INSPGGSVTAGMAVYDTMQYIPNDVVTIGMGMAASMGQFLLTGGTPGKRFALPHTDILMH 123

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           Q S G  G ASDI+  A+ +++ K+R+ EI  ++ G+T E + +  DRD   +A EA ++
Sbjct: 124 QGSAGLGGTASDIKIQAEYLLRTKQRMAEITARHSGQTVEAIIRDGDRDRWFTAEEAREY 183

Query: 199 GVVDKVLMS 207
           G++D+++ +
Sbjct: 184 GLIDEIITA 192


>gi|239983579|ref|ZP_04706103.1| ATP-dependent Clp protease proteolytic subunit 1 [Streptomyces
           albus J1074]
          Length = 211

 Score =  178 bits (451), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 85/181 (46%), Positives = 123/181 (67%), Gaps = 2/181 (1%)

Query: 33  YD--IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGM 90
           YD  +  +LL +RIV +  Q+++  A  +CAQLL L AE+P+ +ISLYINSPGG VTAG+
Sbjct: 20  YDDQLAGQLLTQRIVLLGTQVDETSANRVCAQLLLLSAEDPRTDISLYINSPGGSVTAGL 79

Query: 91  AIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASD 150
           AIYDTM+ I   +ST  MG AASMG  LL+ G  G RFALPNARI++HQPS G  G A+D
Sbjct: 80  AIYDTMRLIPNDVSTLAMGFAASMGQFLLTVGTAGKRFALPNARIMMHQPSAGIGGSAAD 139

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           I   A+++   KR +  +  ++ G++  E+ +  DRD   +A +A ++G+VD+V+ +  D
Sbjct: 140 IAIQAENLEFTKRAIERLTAEHTGRSEAEISRDSDRDRWFTAEQAKEYGMVDRVVHTLDD 199

Query: 211 I 211
           +
Sbjct: 200 V 200


>gi|224079413|ref|XP_002305856.1| predicted protein [Populus trichocarpa]
 gi|222848820|gb|EEE86367.1| predicted protein [Populus trichocarpa]
          Length = 338

 Score =  178 bits (451), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 84/172 (48%), Positives = 123/172 (71%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D  + LL++RI+F+  Q++D  A  I +QLLFL+AE+P+K+I L+INSPGG VTAG+ IY
Sbjct: 98  DTTNMLLRQRIIFLGSQVDDVTADFIISQLLFLDAEDPKKDIKLFINSPGGSVTAGLGIY 157

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M+  K  +ST C+G AASMG+ LLSAG KG RF +PN R+++HQP G   G+AS++  
Sbjct: 158 DAMKLCKADVSTICLGLAASMGAFLLSAGSKGKRFCMPNGRVMIHQPLGTAGGKASEMSI 217

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
             +++   K +LN+I  +  GK  E+VE   DRD+ M+A EA ++G+VD+V+
Sbjct: 218 RIREMSYHKIKLNKILSRITGKPLEQVEVDTDRDNFMNAWEAKEYGLVDEVI 269


>gi|229915491|gb|ACQ90835.1| proteolytic subunit 2 of clp protease [Pedinomonas minor]
          Length = 199

 Score =  178 bits (451), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 76/176 (43%), Positives = 124/176 (70%)

Query: 29  GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTA 88
           G +  D+Y+R+ +ER++F   +++D  A  +   +L+L AE+  K + +YINSPGG VT 
Sbjct: 17  GAQWVDLYNRMYRERVLFFCQELDDEFANQLIGIMLYLNAEDANKPLYIYINSPGGSVTC 76

Query: 89  GMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQA 148
           G+A+YDTM +IK  +ST C+G AASM S +L+ G+KG R ALP+ARI++HQP GG  GQA
Sbjct: 77  GIAVYDTMNYIKCGVSTICVGTAASMASFVLAGGDKGNRIALPHARIMIHQPEGGSQGQA 136

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           S++   ++++++I+R++  IY +  G+    + + LDRD  +SA EA ++G++DK+
Sbjct: 137 SEVLSESEEVLRIRRQVGRIYAEKTGQPLNRISRDLDRDQFLSAKEAKEYGLIDKI 192


>gi|302534405|ref|ZP_07286747.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sp. C]
 gi|302443300|gb|EFL15116.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sp. C]
          Length = 221

 Score =  178 bits (451), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 90/192 (46%), Positives = 137/192 (71%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T++G R YD Y++L +ER++F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 25  VIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISI 84

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQF+KP I T CMGQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 85  YINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLI 144

Query: 138 HQPSGGFSG-QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQPSGG    Q SD+E  A +I++++ +L  +  K+     E++   ++RD I++A +A 
Sbjct: 145 HQPSGGTGREQLSDLEIAANEILRMRDQLETMLAKHSSTPIEKIRDDIERDKILTAEDAL 204

Query: 197 DWGVVDKVLMSR 208
            +G++D+++ +R
Sbjct: 205 AYGLIDQIVSTR 216


>gi|329934561|ref|ZP_08284602.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           griseoaurantiacus M045]
 gi|329305383|gb|EGG49239.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           griseoaurantiacus M045]
          Length = 235

 Score =  178 bits (451), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 90/192 (46%), Positives = 138/192 (71%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T++G R YD Y++L +ER++F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 36  VIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISV 95

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQF+KP I T CMGQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 96  YINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNARVLI 155

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP S    GQ SD+E  A +I++++ +L ++  K+     E++ + ++RD I++A EA 
Sbjct: 156 HQPYSETGRGQVSDLEIAANEILRMRAQLEDLLAKHSTTPIEKIREDIERDKILTAEEAL 215

Query: 197 DWGVVDKVLMSR 208
            +G++D+++ +R
Sbjct: 216 SYGLIDQIISTR 227


>gi|117927945|ref|YP_872496.1| ClpP1 peptidase. Serine peptidase. MEROPS family S14 [Acidothermus
           cellulolyticus 11B]
 gi|117648408|gb|ABK52510.1| ATP-dependent Clp protease proteolytic subunit ClpP [Acidothermus
           cellulolyticus 11B]
          Length = 221

 Score =  178 bits (451), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 84/174 (48%), Positives = 122/174 (70%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D++++LL+ RI+F+   ++D +A  ICAQLL L AE+P ++I LYINSPGG V AGMAIY
Sbjct: 36  DVFNKLLRNRILFLGTVVDDALANKICAQLLLLAAEDPDRDIYLYINSPGGSVDAGMAIY 95

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           DTMQ+++  ++T  +G AASMG  LL AG KG R+ALP+ARI++HQP GG  G AS I  
Sbjct: 96  DTMQYVQCDVATVALGLAASMGQFLLCAGAKGKRYALPHARIMMHQPLGGIGGTASLIAI 155

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
            A+ ++  KR L ++  ++ G+  E +E+  DR+   SA EA ++G +D V+ S
Sbjct: 156 QAEQMLYAKRTLQQLISQHTGQPIERIERDSDRERWFSAEEAKEYGFIDHVVRS 209


>gi|296270441|ref|YP_003653073.1| endopeptidase Clp [Thermobispora bispora DSM 43833]
 gi|296093228|gb|ADG89180.1| Endopeptidase Clp [Thermobispora bispora DSM 43833]
          Length = 217

 Score =  178 bits (451), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 84/173 (48%), Positives = 119/173 (68%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y  LL+ERIV +  Q+ D +A  ICAQLL L AE+ +++I +YINSPGG VT+GMAIYD
Sbjct: 34  LYQWLLRERIVVLGSQVTDEVANRICAQLLLLAAEDEERDIWMYINSPGGSVTSGMAIYD 93

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            MQ++   + T  MG AASMG  LL AG +G R+ALP+ARI++HQPSGG  G A+D+   
Sbjct: 94  MMQYVPNDVCTVAMGLAASMGQFLLCAGTRGKRYALPHARIMMHQPSGGIGGTAADVAIQ 153

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+ ++ +K+ L E    + G+T E++E+  DRD   +A EA  +G +D V+ S
Sbjct: 154 AEQMLYVKKTLAERIAYHTGQTVEQIERDSDRDRWFTAEEAKAYGFIDHVVRS 206


>gi|239941128|ref|ZP_04693065.1| putative ATP-dependent Clp protease proteolytic subunit 1
           [Streptomyces roseosporus NRRL 15998]
 gi|239987606|ref|ZP_04708270.1| putative ATP-dependent Clp protease proteolytic subunit 1
           [Streptomyces roseosporus NRRL 11379]
 gi|291444569|ref|ZP_06583959.1| ATP-dependent Clp protease proteolytic subunit 1 [Streptomyces
           roseosporus NRRL 15998]
 gi|291347516|gb|EFE74420.1| ATP-dependent Clp protease proteolytic subunit 1 [Streptomyces
           roseosporus NRRL 15998]
          Length = 205

 Score =  178 bits (451), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 87/171 (50%), Positives = 118/171 (69%), Gaps = 1/171 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +YSRLL ERI+F+  Q++D +A  I AQLL L A+ P K+I LYINSPGG VTAGMA+YD
Sbjct: 22  VYSRLLGERIIFLGQQVDDDIANKITAQLLLLAAD-PDKDIYLYINSPGGSVTAGMAVYD 80

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ+I   + T  MG AASMG  LL+ G  G RFALPN  IL+HQ S G  G ASDI+  
Sbjct: 81  TMQYIPNDVVTIGMGMAASMGQFLLTGGASGKRFALPNTDILMHQGSAGIGGTASDIKIQ 140

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+ +++ K R+ EI   + G+T E + +  DRD   +A EA ++G++D+++
Sbjct: 141 AEYLLRTKTRMAEITAHHSGQTVETIIRDGDRDRWYTAEEAKEYGLIDEII 191


>gi|220912906|ref|YP_002488215.1| ATP-dependent Clp protease proteolytic subunit [Arthrobacter
           chlorophenolicus A6]
 gi|219859784|gb|ACL40126.1| Endopeptidase Clp [Arthrobacter chlorophenolicus A6]
          Length = 219

 Score =  177 bits (450), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 92/193 (47%), Positives = 137/193 (70%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++RI+F+  Q++D  A  I AQLL LE+ +P ++I+L
Sbjct: 18  VLPQFEERTPYGFKRQDPYTKLFEDRIIFLGVQVDDASADDIMAQLLVLESTDPDRDITL 77

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+I+P I T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 78  YINSPGGSFTAMTAIYDTMQYIRPEIQTVCLGQAASAAAVLLAAGTPGKRLALPNARVLI 137

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASD+E  A ++++++  L +    + G+T E+V   ++RD I++A+EA
Sbjct: 138 HQPALSGGQGGQASDLEIQAAEVMRMRSWLEDTLAHHSGRTSEQVNNDIERDKILTAAEA 197

Query: 196 CDWGVVDKVLMSR 208
             +G++D+VL SR
Sbjct: 198 QSYGLIDQVLDSR 210


>gi|284034788|ref|YP_003384719.1| endopeptidase Clp [Kribbella flavida DSM 17836]
 gi|283814081|gb|ADB35920.1| Endopeptidase Clp [Kribbella flavida DSM 17836]
          Length = 192

 Score =  177 bits (450), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 81/179 (45%), Positives = 123/179 (68%)

Query: 33  YDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI 92
           + IY RLL +RI+ +  +I+D  A  +CAQL+ L AE+P+ +ISLYINSPGG V+AG+AI
Sbjct: 12  HHIYQRLLWQRILVLGDEIKDENANALCAQLILLNAEDPKADISLYINSPGGSVSAGLAI 71

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIE 152
           YDTM FI   ++T+ MG  ASMG +LL+ G  G R++LP+ARI++HQP+GG  G ASDI+
Sbjct: 72  YDTMNFISNDVATYAMGLVASMGQVLLTCGAPGKRYSLPHARIMMHQPTGGMGGTASDIK 131

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
             A+  +  K+ L ++  K  G+  E+V +  DRD   +  +A ++G+VD++L   + +
Sbjct: 132 TQAEQSLLAKKDLAKLLSKRTGQPEEKVTEDFDRDRWFTPDQAVEYGIVDRILTQPVAV 190


>gi|296129241|ref|YP_003636491.1| Endopeptidase Clp [Cellulomonas flavigena DSM 20109]
 gi|296021056|gb|ADG74292.1| Endopeptidase Clp [Cellulomonas flavigena DSM 20109]
          Length = 231

 Score =  177 bits (450), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 91/193 (47%), Positives = 139/193 (72%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++RI+F+  Q++D  A  + AQLL LE+ +P ++I+L
Sbjct: 28  VLPQFEERTAYGFKRQDPYTKLFEDRIIFLGVQVDDASADDVMAQLLVLESTDPDRDITL 87

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+IKP I T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 88  YINSPGGSFTALTAIYDTMQYIKPHIQTVCLGQAASAAAILLAAGSPGKRLALPNARVLI 147

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+  GG   QASDIE  A ++++I+  L +   ++ G+  E+V++ ++RD I++A++A
Sbjct: 148 HQPAMEGGGYAQASDIEIQANELIRIRDWLEKALAQHTGRPLEQVQQDIERDKILTAAQA 207

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD+VL SR
Sbjct: 208 KEYGIVDQVLESR 220


>gi|50954514|ref|YP_061802.1| ATP-dependent Clp protease proteolytic subunit [Leifsonia xyli
           subsp. xyli str. CTCB07]
 gi|67460475|sp|Q6AFZ8|CLPP1_LEIXX RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|50950996|gb|AAT88697.1| ATP-dependent Clp protease proteolytic subunit [Leifsonia xyli
           subsp. xyli str. CTCB07]
          Length = 197

 Score =  177 bits (450), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 91/170 (53%), Positives = 119/170 (70%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           ++ RLLK+RI+++  ++ D  A  I A+LL L AE+ +++I LYINSPGG +TAGMAIYD
Sbjct: 10  VFDRLLKDRIIWLGSEVRDENANEIAAKLLLLAAEDSKRDIYLYINSPGGSITAGMAIYD 69

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQF+   I T  +G AASMG LLL+AG KG R+  PNAR+LLHQP GGF G ASDI   
Sbjct: 70  TMQFVPNDIVTVGIGMAASMGQLLLTAGTKGKRYITPNARVLLHQPHGGFGGTASDIRTQ 129

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           AQ I+ +K+RL EI  +  GKT ++V    DRD   +A EA D+G VD +
Sbjct: 130 AQLILHMKKRLAEITSEATGKTVDQVNADGDRDRWFTAQEALDYGFVDHI 179


>gi|255532580|ref|YP_003092952.1| endopeptidase Clp [Pedobacter heparinus DSM 2366]
 gi|255345564|gb|ACU04890.1| Endopeptidase Clp [Pedobacter heparinus DSM 2366]
          Length = 226

 Score =  177 bits (450), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 79/190 (41%), Positives = 131/190 (68%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + + P + E+        D++SRL+ +RI+F+   +++  A +I AQLLFL++ + +K+I
Sbjct: 35  VAMTPYITEERQLNVAQMDVFSRLMMDRIIFLGEAVDERNANVIQAQLLFLQSADAEKDI 94

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LY+NSPGG V AG+ IYDTMQFI P ++T C G A SMGS+LL AG  G R AL +AR+
Sbjct: 95  QLYVNSPGGSVYAGLGIYDTMQFIAPDVATICTGIALSMGSVLLCAGAAGKRSALQHARV 154

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQ SGG  G A+D++   + ++++++ L +I  K+ G+ YE + +   RD+ M+++EA
Sbjct: 155 MIHQTSGGTQGTATDMDISVRQVLQVQKELYQIIAKHSGQPYERINEAASRDYWMTSAEA 214

Query: 196 CDWGVVDKVL 205
            ++G+VD++L
Sbjct: 215 KEFGMVDEIL 224


>gi|116791922|gb|ABK26160.1| unknown [Picea sitchensis]
          Length = 303

 Score =  177 bits (450), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 88/176 (50%), Positives = 126/176 (71%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ER   + S+L + RI+   G ++D MA LI AQLL+L+A +P ++I +YINSPGG VTAG
Sbjct: 112 ERFQSVISQLFQHRIIRCGGAVDDDMANLIVAQLLYLDAADPNRDIIMYINSPGGSVTAG 171

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
           MA++DTM+ I+P +ST C+G AASMG+ LLS+G KG R++LPN+RI++HQP GG  GQ S
Sbjct: 172 MAVFDTMRHIRPDVSTVCVGLAASMGAFLLSSGTKGKRYSLPNSRIMIHQPLGGGQGQQS 231

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           D+E  A +I+  K  LN     + G++ E++ +  DRD  MSA EA D+G++D V+
Sbjct: 232 DLEIQANEILHHKANLNGYLAYHTGQSIEKIVEDTDRDFFMSAKEAKDYGLIDGVI 287


>gi|225446742|ref|XP_002282652.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 291

 Score =  177 bits (450), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 82/172 (47%), Positives = 120/172 (69%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D    LLKERIVF+   ++D +A  I +QLL L+A++P K+I L+INSPGG ++A MAIY
Sbjct: 78  DAMGLLLKERIVFLGNNVDDFVADAIISQLLLLDAQDPTKDIRLFINSPGGSLSATMAIY 137

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D +Q ++  +ST  +G +AS  S++L  G KG RFA+PN RI++HQP GG SGQA D+E 
Sbjct: 138 DIVQLVRADVSTVALGISASTASIILGGGTKGKRFAMPNTRIMIHQPLGGASGQAIDVEI 197

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            AQ+I+  K  + +I     G+++E+VEK +DRD  MS  EA ++G++D V+
Sbjct: 198 QAQEIMHNKSNVTKIIAGFSGRSFEQVEKDIDRDRYMSPIEAVEYGIIDAVI 249


>gi|296394282|ref|YP_003659166.1| endopeptidase Clp [Segniliparus rotundus DSM 44985]
 gi|296181429|gb|ADG98335.1| Endopeptidase Clp [Segniliparus rotundus DSM 44985]
          Length = 210

 Score =  177 bits (450), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 92/194 (47%), Positives = 134/194 (69%), Gaps = 3/194 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP  +E T+ G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE+ +P ++I++
Sbjct: 11  IVPSFIEHTSTGVKETNPYTKLFEERIIFLGTQVDDTSANDIMAQLLVLESLDPDRDITI 70

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQF+   I+T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 71  YINSPGGSFTSLMAIYDTMQFVHCDIATVCLGQAASAAAVLLAAGTPGKRAALPNARVLI 130

Query: 138 HQP---SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           HQP    G   GQA+D+E  A +I +++R + E   ++ GKT +EV K  DRD I++A E
Sbjct: 131 HQPRIEGGAIRGQATDLEIQAAEIERMRRLMEETLSRHTGKTADEVRKDTDRDKILTAQE 190

Query: 195 ACDWGVVDKVLMSR 208
           A D+G++D V   R
Sbjct: 191 AKDYGIIDSVYPYR 204


>gi|91216523|ref|ZP_01253489.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Psychroflexus
           torquis ATCC 700755]
 gi|91185317|gb|EAS71694.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Psychroflexus
           torquis ATCC 700755]
          Length = 182

 Score =  177 bits (450), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 87/171 (50%), Positives = 118/171 (69%), Gaps = 1/171 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I  + L+ER VF+ GQ++   A  I  +L++L+ E+   EI  YINSPGG VT G AIYD
Sbjct: 12  IDKKFLEERKVFLNGQVDGKSAKHIIDRLMYLDMES-NDEIQFYINSPGGYVTDGFAIYD 70

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM+ +K P+ST C G AASMGS+L+S GEKG RF  P+A+I++HQP GG  GQAS+IE  
Sbjct: 71  TMKGLKSPVSTICCGLAASMGSILMSGGEKGKRFIQPHAKIMIHQPMGGAQGQASNIEIQ 130

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A++I+KIK    +I   NCG+  ++V K   RDH M A E+ D+G+VD +L
Sbjct: 131 AKEILKIKELSAKILADNCGQDLDKVMKDFKRDHWMDAQESSDYGIVDGIL 181


>gi|302143493|emb|CBI22054.3| unnamed protein product [Vitis vinifera]
          Length = 212

 Score =  177 bits (450), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 81/167 (48%), Positives = 119/167 (71%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           LLKERIVF+   ++D +A  I +QLL L+A++P K+I L+INSPGG ++A MAIYD +Q 
Sbjct: 4   LLKERIVFLGNNVDDFVADAIISQLLLLDAQDPTKDIRLFINSPGGSLSATMAIYDIVQL 63

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           ++  +ST  +G +AS  S++L  G KG RFA+PN RI++HQP GG SGQA D+E  AQ+I
Sbjct: 64  VRADVSTVALGISASTASIILGGGTKGKRFAMPNTRIMIHQPLGGASGQAIDVEIQAQEI 123

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           +  K  + +I     G+++E+VEK +DRD  MS  EA ++G++D V+
Sbjct: 124 MHNKSNVTKIIAGFSGRSFEQVEKDIDRDRYMSPIEAVEYGIIDAVI 170


>gi|297562335|ref|YP_003681309.1| endopeptidase Clp [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
 gi|296846783|gb|ADH68803.1| Endopeptidase Clp [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
          Length = 219

 Score =  177 bits (450), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 92/192 (47%), Positives = 136/192 (70%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T+ G +  + Y++L +ERI+FV  QI+D  A  + AQL+ LE  + +++I +
Sbjct: 22  VLPSYVERTSYGVKEMNPYNKLFEERIIFVGVQIDDTSANDLMAQLITLEQLDSERDIQM 81

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQF++P I T C+GQAAS  ++LL+ G +G R ALPNARIL+
Sbjct: 82  YINSPGGSFTSLMAIYDTMQFVRPDIQTVCIGQAASAAAILLAGGTEGKRGALPNARILI 141

Query: 138 HQPSG-GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+  G  GQASDIE  A +I +I+ +L     ++ G++ E+V K ++RD I++A EA 
Sbjct: 142 HQPATEGMHGQASDIEIQANEITRIRTQLETTLARHTGRSVEQVSKDIERDKILTAEEAK 201

Query: 197 DWGVVDKVLMSR 208
           D+G++D VL  R
Sbjct: 202 DYGIIDFVLPYR 213


>gi|72162592|ref|YP_290249.1| ATP-dependent Clp protease proteolytic subunit [Thermobifida fusca
           YX]
 gi|124013819|sp|Q47MU3|CLPP1_THEFY RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|71916324|gb|AAZ56226.1| ATP-dependent Clp protease proteolytic subunit ClpP / ClpP2
           peptidase. Serine peptidase. MEROPS family S14
           [Thermobifida fusca YX]
          Length = 222

 Score =  177 bits (450), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 92/192 (47%), Positives = 137/192 (71%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +E+T  G +  + Y++L +ERI+FV  QI+D  A  I AQ++ LE  +  ++I+L
Sbjct: 26  VLPSYIERTAYGVKEMNPYNKLFEERIIFVGVQIDDTSANDIIAQMMTLEHIDSDRDITL 85

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQF++P I T C+GQAAS  ++LL+ G KG R ALPN+RIL+
Sbjct: 86  YINSPGGSFTSLMAIYDTMQFVRPDIQTVCVGQAASAAAVLLAGGTKGKRTALPNSRILI 145

Query: 138 HQPSG-GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+  G  GQASD+E  A +I++I+ +L  I  K+ G++ EE+ + ++RD I++A EA 
Sbjct: 146 HQPATEGTHGQASDVEIMANEIMRIRHQLETILAKHTGRSVEEISRDIERDKILTAEEAK 205

Query: 197 DWGVVDKVLMSR 208
           ++G+VD VL  R
Sbjct: 206 EYGIVDDVLPYR 217


>gi|290962845|ref|YP_003494027.1| ATP-dependent Clp protease proteolytic subunit 1 [Streptomyces
           scabiei 87.22]
 gi|260652371|emb|CBG75504.1| putative ATP-dependent Clp protease proteolytic subunit 1
           [Streptomyces scabiei 87.22]
          Length = 218

 Score =  177 bits (450), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 85/181 (46%), Positives = 124/181 (68%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           + ++LL +RIVF+  Q+++  A  +CAQLL L AE+P+ +ISL INSPGG VTAG+AI+D
Sbjct: 30  LAAQLLAQRIVFLGTQVDEVSANRVCAQLLLLSAEDPRTDISLCINSPGGSVTAGLAIHD 89

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM+ I   +ST  MG AASMG  LLS G +G R+ALPNARI++HQPS G  G  +DIE  
Sbjct: 90  TMRLIPNDVSTLAMGFAASMGQFLLSVGARGKRYALPNARIMMHQPSAGIGGTTADIEIQ 149

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           A+++   KR +  I  ++ G+T E + +  DRD   +A +A ++G+VD+V+ +  D+   
Sbjct: 150 AENLEFTKRAIERITAEHTGQTVETISRDGDRDRWFTAEQAREYGMVDRVVETLDDVRPA 209

Query: 215 S 215
           S
Sbjct: 210 S 210


>gi|119961335|ref|YP_948115.1| ATP-dependent Clp protease proteolytic subunit [Arthrobacter
           aurescens TC1]
 gi|119948194|gb|ABM07105.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP
           [Arthrobacter aurescens TC1]
          Length = 219

 Score =  177 bits (449), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 91/193 (47%), Positives = 137/193 (70%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++RI+F+  Q++D  A  I AQLL LE+ +P ++I+L
Sbjct: 18  VLPQFEERTPYGFKRQDPYTKLFEDRIIFLGVQVDDASADDIMAQLLVLESTDPDRDITL 77

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+I+P I T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 78  YINSPGGSFTAMTAIYDTMQYIRPEIQTVCLGQAASAAAVLLAAGTPGKRLALPNARVLI 137

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASD+E  A ++++++  L +    + G+T E+V   ++RD I++A++A
Sbjct: 138 HQPALSGGQGGQASDLEIQAAEVMRMRTWLEDTLAHHSGRTSEQVNNDIERDKILTAADA 197

Query: 196 CDWGVVDKVLMSR 208
             +G++D+VL SR
Sbjct: 198 LSYGLIDQVLDSR 210


>gi|159039407|ref|YP_001538660.1| endopeptidase Clp [Salinispora arenicola CNS-205]
 gi|157918242|gb|ABV99669.1| Endopeptidase Clp [Salinispora arenicola CNS-205]
          Length = 220

 Score =  177 bits (449), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 91/193 (47%), Positives = 140/193 (72%), Gaps = 3/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T+ G +  + Y++L ++RI+F+  Q++D  A  + AQLL LE  +P ++I +
Sbjct: 18  VLPSFVERTSYGVKESNPYNKLFEDRIIFLGVQVDDASANDVMAQLLTLEGTDPDRDIIM 77

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+++P I T C+GQAAS  ++LLSAG  G R ALPN+RI++
Sbjct: 78  YINSPGGSFTAMTAIYDTMQYVRPDIQTVCLGQAASAAAVLLSAGTPGKRMALPNSRIII 137

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+  GG+ GQ SDIE  A++I++++ +L E+  ++C +  E+V K +DRD IM+A E+
Sbjct: 138 HQPATEGGY-GQGSDIEIQAREILRMRTQLEEMLSRHCNQPVEKVRKDIDRDKIMTAEES 196

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD +L SR
Sbjct: 197 REYGLVDTILTSR 209


>gi|145596010|ref|YP_001160307.1| endopeptidase Clp [Salinispora tropica CNB-440]
 gi|145305347|gb|ABP55929.1| Endopeptidase Clp [Salinispora tropica CNB-440]
          Length = 220

 Score =  177 bits (449), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 91/193 (47%), Positives = 140/193 (72%), Gaps = 3/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T+ G +  + Y++L ++RI+F+  Q++D  A  + AQLL LE  +P ++I +
Sbjct: 18  VLPSFVERTSYGVKESNPYNKLFEDRIIFLGVQVDDASANDVMAQLLTLEGTDPDRDIIM 77

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+++P I T C+GQAAS  ++LLSAG  G R ALPN+RI++
Sbjct: 78  YINSPGGSFTAMTAIYDTMQYVRPDIQTVCLGQAASAAAMLLSAGTPGKRMALPNSRIII 137

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+  GG+ GQ SDIE  A++I++++ +L E+  ++C +  E+V K +DRD IM+A E+
Sbjct: 138 HQPATEGGY-GQGSDIEIQAREILRMRTQLEEMLSRHCNQPVEKVRKDIDRDKIMTAEES 196

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD +L SR
Sbjct: 197 REYGLVDTILTSR 209


>gi|159036302|ref|YP_001535555.1| endopeptidase Clp [Salinispora arenicola CNS-205]
 gi|157915137|gb|ABV96564.1| Endopeptidase Clp [Salinispora arenicola CNS-205]
          Length = 194

 Score =  177 bits (449), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 79/186 (42%), Positives = 125/186 (67%), Gaps = 2/186 (1%)

Query: 22  VVEQTNRGERSY--DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           ++   + G R +   ++ RLLKERIVF+  ++ D  A  ICAQ+L L AE+P ++I LYI
Sbjct: 1   MIRMLDDGPRGFGDQVFERLLKERIVFLGTEVTDESANRICAQILLLAAEDPDRDIMLYI 60

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V+AGMA+YDTM+F+   ++T  +G A SMG  LL AG  G R+ALP++ IL+HQ
Sbjct: 61  NSPGGSVSAGMAVYDTMRFVHNDVATLALGMAGSMGQFLLCAGAAGKRYALPHSWILMHQ 120

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           PSGG  G A+D+   A++++ +K+    +  ++ G+T  E+++  DRD   +  +A ++G
Sbjct: 121 PSGGMGGTAADVRIQAENLLYVKKTTQGLIAQHSGRTLAEIQRDWDRDRWFTPEQAREYG 180

Query: 200 VVDKVL 205
           ++D V+
Sbjct: 181 LIDHVI 186


>gi|297160513|gb|ADI10225.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           bingchenggensis BCW-1]
          Length = 223

 Score =  177 bits (449), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 92/192 (47%), Positives = 137/192 (71%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP  VE+T++G R YD Y++L +ER++F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 25  VVPRFVERTSQGIREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISI 84

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQF+KP I T CMGQAAS  ++LLSAG  G R ALPNAR+L+
Sbjct: 85  YINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLSAGTPGKRMALPNARVLI 144

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP S    GQ SD+E  A +I++++ +L E+  K+     E++   ++RD I++A E+ 
Sbjct: 145 HQPYSETGRGQVSDLEIAANEILRMRSQLEEMLAKHSTTPIEKIRDDIERDKILTAEESL 204

Query: 197 DWGVVDKVLMSR 208
            +G++D+++ +R
Sbjct: 205 SYGLIDQIVSTR 216


>gi|330469649|ref|YP_004407392.1| endopeptidase Clp [Verrucosispora maris AB-18-032]
 gi|328812620|gb|AEB46792.1| endopeptidase Clp [Verrucosispora maris AB-18-032]
          Length = 220

 Score =  177 bits (449), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 90/193 (46%), Positives = 140/193 (72%), Gaps = 3/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T+ G +  + Y++L ++RI+F+  Q++D  A  + AQLL LE  +P ++I +
Sbjct: 18  VLPSFVERTSYGVKESNPYNKLFEDRIIFLGVQVDDASANDVMAQLLTLEGTDPDRDIIM 77

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+++P I T C+GQAAS  ++LL+AG  G R ALPN+RI++
Sbjct: 78  YINSPGGSFTAMTAIYDTMQYVRPDIQTVCLGQAASAAAVLLAAGTPGKRMALPNSRIII 137

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+  GG+ GQ SDIE  A++I++++ +L E+  ++C +  E+V K +DRD IM+A E+
Sbjct: 138 HQPATEGGY-GQGSDIEIQAREILRMRTQLEEMLSRHCNRPIEKVRKDIDRDKIMTAEES 196

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD +L SR
Sbjct: 197 REYGLVDTILSSR 209


>gi|289771641|ref|ZP_06531019.1| Clp protease [Streptomyces lividans TK24]
 gi|289701840|gb|EFD69269.1| Clp protease [Streptomyces lividans TK24]
          Length = 224

 Score =  177 bits (449), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 88/192 (45%), Positives = 138/192 (71%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T++G R YD Y++L +ER++F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 25  VIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISV 84

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ++KP + T CMGQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 85  YINSPGGSFTALTAIYDTMQYVKPDVQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLI 144

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP S    GQ SD+E  A +I++++ +L E+  K+     E++ + ++RD I++A +A 
Sbjct: 145 HQPYSETGRGQVSDLEIAANEILRMRSQLEEMLAKHSTTPVEKIREDIERDKILTAEDAL 204

Query: 197 DWGVVDKVLMSR 208
            +G++D+++ +R
Sbjct: 205 SYGLIDQIITTR 216


>gi|226360645|ref|YP_002778423.1| ATP-dependent Clp protease proteolytic subunit [Rhodococcus opacus
           B4]
 gi|226239130|dbj|BAH49478.1| ATP-dependent Clp protease proteolytic subunit [Rhodococcus opacus
           B4]
          Length = 194

 Score =  177 bits (449), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 93/188 (49%), Positives = 137/188 (72%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+E+T  GERS+DI+SRLL ERIVF+  +I+D +A ++ AQLL L+A++  +EI LY
Sbjct: 6   IPHVIERTPAGERSFDIFSRLLNERIVFLGTEIDDGVANVVMAQLLHLQADSSDQEIGLY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TA +AIYDTMQF++P I+T+CMGQAAS  ++LL+AG +G R  L ++R+LLH
Sbjct: 66  INSPGGSTTAMLAIYDTMQFLRPTIATYCMGQAASAAAVLLAAGTEGHRHVLAHSRVLLH 125

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPS   +G  SD+   A +I++++ +   I  K+ G+T E + +  DRD I +A EA D+
Sbjct: 126 QPSTQGNGTISDLALQAAEIMRVRSQTESILSKHTGQTVERLRRDTDRDRIFTAQEAIDY 185

Query: 199 GVVDKVLM 206
           G+ D V++
Sbjct: 186 GLADTVVV 193


>gi|70699877|gb|AAZ06846.1| ClpP2 [Microbacterium arborescens]
          Length = 208

 Score =  177 bits (449), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 93/193 (48%), Positives = 136/193 (70%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++R++F+  Q++D  A  + AQLL LE+++P ++I +
Sbjct: 7   ILPQFEERTAYGYKRQDPYNKLFEDRVIFLGVQVDDASADDVMAQLLVLESQDPDRDIIM 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ++ P I T  +GQAAS  S+LL+AG  G R ALPNARIL+
Sbjct: 67  YINSPGGSFTAMTAIYDTMQYVSPQIQTVVLGQAASAASVLLAAGAPGKRLALPNARILI 126

Query: 138 HQPSGGFS--GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+ G +  GQASDIE  A +I++++  L E   ++  +T E+V K +DRD I+SA EA
Sbjct: 127 HQPAVGEAGHGQASDIEIQAAEILRMRTWLEETMARHTNRTQEQVNKDIDRDKILSAHEA 186

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD+VL SR
Sbjct: 187 MEYGIVDQVLTSR 199


>gi|21219747|ref|NP_625526.1| ATP-dependent Clp protease [Streptomyces coelicolor A3(2)]
 gi|256789167|ref|ZP_05527598.1| ATP-dependent Clp protease [Streptomyces lividans TK24]
 gi|289773060|ref|ZP_06532438.1| Clp protease [Streptomyces lividans TK24]
 gi|32171362|sp|Q9FCC9|CLPP5_STRCO RecName: Full=Putative ATP-dependent Clp protease proteolytic
           subunit-like; AltName: Full=Endopeptidase Clp-like
 gi|9716124|emb|CAC01462.1| putative ATP-dependent Clp protease [Streptomyces coelicolor A3(2)]
 gi|289703259|gb|EFD70688.1| Clp protease [Streptomyces lividans TK24]
          Length = 211

 Score =  177 bits (448), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 82/193 (42%), Positives = 132/193 (68%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T+ G R+ D YS+LL+ERIVF+   +++  A  + AQL++LE + P ++I L
Sbjct: 9   VLPEFTERTSAGTRTSDPYSKLLQERIVFLGTPVDETSANDVTAQLMYLEHQAPDRDIEL 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG  TA  AIYDTM+++   ++T C+GQA    ++LL+AG  G R ALP AR++L
Sbjct: 69  YVNSPGGSFTAMTAIYDTMRYVACDVATTCLGQAGPSAAVLLAAGTPGKRAALPGARVVL 128

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  +    GQA D+  HA ++V+++ RL EI V++ G+T  +V   L+RD ++ A +A
Sbjct: 129 HQPALTEPVRGQAGDLAVHAAELVRVRARLEEILVRHTGRTPGQVAADLERDTVLDARQA 188

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD+++  R
Sbjct: 189 REYGLVDRIVPGR 201


>gi|302560651|ref|ZP_07312993.1| Clp protease [Streptomyces griseoflavus Tu4000]
 gi|302478269|gb|EFL41362.1| Clp protease [Streptomyces griseoflavus Tu4000]
          Length = 226

 Score =  177 bits (448), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 88/192 (45%), Positives = 140/192 (72%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T++G R YD Y++L +ER++F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 27  VIPRFVERTSQGIREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISV 86

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ++KP I T CMGQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 87  YINSPGGSFTALTAIYDTMQYVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLI 146

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP S    GQ SD+E  A +I++++ +L E+  K+  +  +++ + ++RD I++A +A 
Sbjct: 147 HQPYSETGRGQVSDLEIAANEILRMRSQLEEMLAKHSTRPIDKIREDIERDKILTAEDAL 206

Query: 197 DWGVVDKVLMSR 208
           ++G++D+++ +R
Sbjct: 207 EYGLIDQIITTR 218


>gi|283779542|ref|YP_003370297.1| endopeptidase Clp [Pirellula staleyi DSM 6068]
 gi|283437995|gb|ADB16437.1| Endopeptidase Clp [Pirellula staleyi DSM 6068]
          Length = 208

 Score =  177 bits (448), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 85/181 (46%), Positives = 125/181 (69%)

Query: 25  QTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG 84
           Q+ + +R   +   LL+ RIVF+ G+I    A  +  +LL+L++EN +K+I  YINSPGG
Sbjct: 16  QSYQRQRQLTLGDLLLENRIVFLQGEIYTGNANEMVMKLLYLQSENRRKDIHFYINSPGG 75

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
            V A +A+YDTMQ +  P++T+C+GQAAS  ++LL  G KG R+ALPN+RI++HQP GG 
Sbjct: 76  DVAATLAVYDTMQMLSCPVATYCVGQAASGAAVLLLGGTKGKRYALPNSRIMMHQPHGGV 135

Query: 145 SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            GQ SDIE  A++I++ +  LNEI  K+ G+  +++ K  DRD  +SA EA  +GVVD +
Sbjct: 136 GGQISDIEIQAREILRYREVLNEIISKHTGQAIDKIAKDCDRDFFLSAGEAKAYGVVDDI 195

Query: 205 L 205
           L
Sbjct: 196 L 196


>gi|159465135|ref|XP_001690778.1| active subunit of chloroplast ClpP peptidase [Chlamydomonas
           reinhardtii]
 gi|158279464|gb|EDP05224.1| active subunit of chloroplast ClpP peptidase [Chlamydomonas
           reinhardtii]
          Length = 345

 Score =  177 bits (448), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 85/186 (45%), Positives = 126/186 (67%), Gaps = 2/186 (1%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P+V  +T   E   D +  LL++RIVF+ G++ED  A  I +QLL L++++P K+I ++I
Sbjct: 53  PIVAPRT--AEMQGDPFGLLLRQRIVFLGGEVEDFGADAIISQLLLLDSQDPTKDIKIFI 110

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VTAGM IYD M   +  ++T+C G AASMG+ LL AG++G R ++PN+RI++HQ
Sbjct: 111 NSPGGSVTAGMGIYDAMMLCRADVNTYCFGLAASMGAFLLGAGKRGKRNSMPNSRIMIHQ 170

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG SGQA DIE  A++I+  K  LN I    C +   ++E+  DRD  MS  EA ++G
Sbjct: 171 PLGGASGQAVDIEIQAKEIMYHKANLNRIMADYCQQPLSKIEEDTDRDRYMSPLEAKEYG 230

Query: 200 VVDKVL 205
           ++D ++
Sbjct: 231 LIDHII 236


>gi|302551409|ref|ZP_07303751.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           viridochromogenes DSM 40736]
 gi|302469027|gb|EFL32120.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           viridochromogenes DSM 40736]
          Length = 235

 Score =  177 bits (448), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 89/192 (46%), Positives = 138/192 (71%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T++G R YD Y++L +ER++F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 36  VIPRFVERTSQGIREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISV 95

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ++KP I T CMGQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 96  YINSPGGSFTALTAIYDTMQYVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLI 155

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP S    GQ SD+E  A +I++++ +L E+  K+     E++ + ++RD I++A +A 
Sbjct: 156 HQPYSETGRGQVSDLEIAANEILRMRSQLEEMLAKHSTTPVEKIREDIERDKILTAEDAL 215

Query: 197 DWGVVDKVLMSR 208
            +G++D+++ +R
Sbjct: 216 SYGLIDQIITTR 227


>gi|17373662|sp|Q9ZH58|CLPP2_STRCO RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
          Length = 218

 Score =  177 bits (448), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 88/192 (45%), Positives = 138/192 (71%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T++G R YD Y++L +ER++F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 19  VIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISV 78

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ++KP + T CMGQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 79  YINSPGGSFTALTAIYDTMQYVKPDVQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLI 138

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP S    GQ SD+E  A +I++++ +L E+  K+     E++ + ++RD I++A +A 
Sbjct: 139 HQPYSETGRGQVSDLEIAANEILRMRSQLEEMLAKHSTTPVEKIREDIERDKILTAEDAL 198

Query: 197 DWGVVDKVLMSR 208
            +G++D+++ +R
Sbjct: 199 SYGLIDQIITTR 210


>gi|68535617|ref|YP_250322.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           jeikeium K411]
 gi|109878267|sp|Q4JWV3|CLPP2_CORJK RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|68263216|emb|CAI36704.1| ATP-dependent Clp protease proteolytic subunit 2 [Corynebacterium
           jeikeium K411]
          Length = 209

 Score =  177 bits (448), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 88/192 (45%), Positives = 136/192 (70%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE ++ G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE  +P ++I++
Sbjct: 12  ILPSFVEHSSYGAKESNPYNKLFEERIIFLGTQVDDASANDIMAQLLVLEGLDPDRDITM 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++P + T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 72  YINSPGGSFTSLMAIYDTMQYVRPDVQTVCLGQAASAAAVLLAAGTPGKRAALPNARVLI 131

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP +GG  GQ SD+E  A++I ++++ + E   ++ GK+ E+V    DRD I++A EA 
Sbjct: 132 HQPATGGVQGQVSDLEIQAKEIERMRKLMEETLARHTGKSAEQVRIDTDRDKILTAEEAK 191

Query: 197 DWGVVDKVLMSR 208
           ++G+VD+V   R
Sbjct: 192 EYGIVDQVFDYR 203


>gi|260578313|ref|ZP_05846229.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Corynebacterium jeikeium ATCC 43734]
 gi|258603615|gb|EEW16876.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Corynebacterium jeikeium ATCC 43734]
          Length = 209

 Score =  177 bits (448), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 88/192 (45%), Positives = 136/192 (70%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE ++ G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE  +P ++I++
Sbjct: 12  ILPSFVEHSSYGAKESNPYNKLFEERIIFLGTQVDDASANDIMAQLLVLEGLDPDRDITM 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++P + T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 72  YINSPGGSFTSLMAIYDTMQYVRPDVQTVCLGQAASAAAVLLAAGTPGKRAALPNARVLI 131

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP +GG  GQ SD+E  A++I ++++ + E   ++ GK+ E+V    DRD I++A EA 
Sbjct: 132 HQPATGGVQGQVSDLEIQAKEIERMRKLMEETLARHTGKSAEQVRIDTDRDKILTAEEAK 191

Query: 197 DWGVVDKVLMSR 208
           ++G+VD+V   R
Sbjct: 192 EYGIVDQVFDYR 203


>gi|302549887|ref|ZP_07302229.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           viridochromogenes DSM 40736]
 gi|302467505|gb|EFL30598.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           viridochromogenes DSM 40736]
          Length = 211

 Score =  177 bits (448), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 81/193 (41%), Positives = 132/193 (68%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G+R+ D YS+LL+ERIVF+   +++  A  + AQ ++LE   P ++ISL
Sbjct: 9   VLPEFTERTGSGQRTMDPYSKLLEERIVFLGTPVDETSANDVMAQFMYLEHHAPDRDISL 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG   A  A+YDTMQ+I   + T C+GQA +  S+LL+AG  G R  LP+AR+++
Sbjct: 69  YINSPGGTFHAMTALYDTMQYINCDVETVCLGQAGAAASMLLAAGTPGKRSVLPDARLVI 128

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+      GQASD+   A ++++I+ R+ E+  ++ G+T E+V   ++RD I++A EA
Sbjct: 129 HQPALPEPVHGQASDLAIQADELMRIRTRMEEMLARHTGRTREQVSADIERDKILTAQEA 188

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD+++ +R
Sbjct: 189 VEYGLVDRIVPNR 201


>gi|302869359|ref|YP_003837996.1| endopeptidase Clp [Micromonospora aurantiaca ATCC 27029]
 gi|315504166|ref|YP_004083053.1| endopeptidase clp [Micromonospora sp. L5]
 gi|302572218|gb|ADL48420.1| Endopeptidase Clp [Micromonospora aurantiaca ATCC 27029]
 gi|315410785|gb|ADU08902.1| Endopeptidase Clp [Micromonospora sp. L5]
          Length = 220

 Score =  176 bits (447), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 90/193 (46%), Positives = 140/193 (72%), Gaps = 3/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T+ G +  + Y++L ++RI+F+  Q++D  A  + AQLL LE  +P ++I +
Sbjct: 18  VLPSFVERTSYGMKESNPYNKLFEDRIIFLGVQVDDASANDVMAQLLTLEGTDPDRDIIM 77

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+++P I T C+GQAAS  ++LLSAG  G R ALPN+RI++
Sbjct: 78  YINSPGGSFTAMTAIYDTMQYVRPDIQTVCLGQAASAAAVLLSAGTPGKRMALPNSRIII 137

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+  GG+ GQ SDIE  A++I++++ +L ++  ++C +  E+V K +DRD IM+A E+
Sbjct: 138 HQPATEGGY-GQGSDIEIQAREILRMRTQLEDMLSRHCNRPIEQVRKDIDRDKIMTAEES 196

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD +L SR
Sbjct: 197 KEYGLVDTILTSR 209


>gi|7524837|ref|NP_045839.1| ATP-dependent Clp protease proteolytic subunit [Chlorella vulgaris]
 gi|3023501|sp|P56317|CLPP_CHLVU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|2224431|dbj|BAA57915.1| ATP-dependent Clp protease proteolytic subunit [Chlorella vulgaris]
          Length = 201

 Score =  176 bits (447), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 75/171 (43%), Positives = 123/171 (71%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  +++D +A  +   +L+L AE   K + +YINSPGG VT G+A+Y
Sbjct: 22  DLYNRLYRERVLFLCQELDDELANQLIGIMLYLNAEEQNKGLYIYINSPGGSVTCGIAVY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M +IK  ++T C+G AASM S +L+ G++G R ALP++RI++HQP GG  GQAS++  
Sbjct: 82  DAMNYIKSEVTTICVGTAASMASFILAGGDRGKRIALPHSRIMVHQPEGGSQGQASEVLS 141

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            +Q++++I+R++  IY +  G+T   V + +DRD  +SA EA ++G+VD+V
Sbjct: 142 ESQEVMRIRRQVGRIYSERTGQTLSRVSRDMDRDQFLSAREAKEYGLVDQV 192


>gi|320103932|ref|YP_004179523.1| ATP-dependent Clp protease proteolytic subunit ClpP [Isosphaera
           pallida ATCC 43644]
 gi|319751214|gb|ADV62974.1| ATP-dependent Clp protease proteolytic subunit ClpP [Isosphaera
           pallida ATCC 43644]
          Length = 252

 Score =  176 bits (447), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 82/176 (46%), Positives = 125/176 (71%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           +R   +   LL+ RI+F+ G I++ +A  +  Q L+L+ EN  + IS YINSPGG V + 
Sbjct: 35  QRQMTLSDLLLENRIIFLEGPIDNVIANHLIKQFLYLQFENRTQGISFYINSPGGSVYST 94

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
           +A+YDTMQF+  PI+T+C+G AAS  ++LL+ G KG RF+LP+++I++HQPSG   GQ S
Sbjct: 95  LAVYDTMQFVNCPIATYCIGMAASGAAVLLAGGTKGKRFSLPHSKIMIHQPSGYVGGQVS 154

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           DIE  A +I+K K+ +NEI  K+ G+ YE + K  +RD  ++A+EA ++G+VD+VL
Sbjct: 155 DIEIQADEILKNKKLINEILAKHTGQPYERIAKDTERDRYLTAAEAKEYGLVDEVL 210


>gi|21221075|ref|NP_626854.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           coelicolor A3(2)]
 gi|256787754|ref|ZP_05526185.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           lividans TK24]
 gi|3834446|gb|AAC70948.1| ATP-dependent Clp protease proteolytic subunit 2 [Streptomyces
           coelicolor A3(2)]
 gi|10280518|emb|CAC09994.1| ATP dependent Clp protease proteolytic subunit 2 [Streptomyces
           coelicolor A3(2)]
          Length = 236

 Score =  176 bits (447), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 88/192 (45%), Positives = 138/192 (71%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T++G R YD Y++L +ER++F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 37  VIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISV 96

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ++KP + T CMGQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 97  YINSPGGSFTALTAIYDTMQYVKPDVQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLI 156

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP S    GQ SD+E  A +I++++ +L E+  K+     E++ + ++RD I++A +A 
Sbjct: 157 HQPYSETGRGQVSDLEIAANEILRMRSQLEEMLAKHSTTPVEKIREDIERDKILTAEDAL 216

Query: 197 DWGVVDKVLMSR 208
            +G++D+++ +R
Sbjct: 217 SYGLIDQIITTR 228


>gi|87306485|ref|ZP_01088632.1| ATP-dependent clp protease proteolytic subunit [Blastopirellula
           marina DSM 3645]
 gi|87290664|gb|EAQ82551.1| ATP-dependent clp protease proteolytic subunit [Blastopirellula
           marina DSM 3645]
          Length = 198

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 83/176 (47%), Positives = 122/176 (69%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           +R   +   LL+ RIVF+ G+I D  A  +  +LL+L++EN +K I+ YINSPGG VTA 
Sbjct: 9   QRQMTLGDMLLENRIVFLQGEIYDGNANELVMKLLYLQSENRRKPINFYINSPGGSVTAT 68

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
           MAIYDTM+ I  P+ST+C+G AAS G++LL+ GE G RF LP+A++++HQP GG  GQ S
Sbjct: 69  MAIYDTMKVISCPVSTYCVGLAASGGAVLLAGGEAGKRFILPHAKVMIHQPHGGVGGQVS 128

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           DIE  A +I+K +  LN++   +C +  E++ K  DRD  + A+ A  +G+VD++L
Sbjct: 129 DIEIQADEILKTRDVLNQVLADHCNQPVEKIAKDTDRDFYLDANAAKAYGIVDEIL 184


>gi|219124070|ref|XP_002182335.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406296|gb|EEC46236.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 214

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 83/172 (48%), Positives = 120/172 (69%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           DIY+RL +ERI+F+  +I+D +A  +   +L+L++E+  K I LYINSPGG V +G+AI+
Sbjct: 33  DIYNRLYRERIIFLGAEIDDELANQVIGVMLYLDSEDSSKPIYLYINSPGGSVISGLAIF 92

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D MQ IK  + T  +G AASMGS +L AG KG R ALP++R ++HQP GG  GQA DI+ 
Sbjct: 93  DAMQHIKSEVITINLGLAASMGSFILGAGSKGKRLALPSSRTMIHQPMGGAQGQAEDIKV 152

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            A  I++I+  L + Y    G+T + + + LDRD+ MSA EA ++G+VD+VL
Sbjct: 153 EAAQIMRIRDNLVKSYSMMTGQTQDRIIQDLDRDNFMSAQEAMEYGLVDRVL 204


>gi|326330782|ref|ZP_08197083.1| Clp protease [Nocardioidaceae bacterium Broad-1]
 gi|325951312|gb|EGD43351.1| Clp protease [Nocardioidaceae bacterium Broad-1]
          Length = 201

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 90/190 (47%), Positives = 134/190 (70%), Gaps = 1/190 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P   E+T+ G R  D Y++L ++RI+++   I D +A  + AQLL L++ NP ++IS+Y
Sbjct: 5   IPQWEERTSYGVRRIDPYAKLFEDRIIYLGTPISDDVANAVIAQLLCLQSMNPDQDISIY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TA  AIYDTMQFIKP + T C+GQAAS  ++LL AG KG R ALPN+RIL+H
Sbjct: 65  INSPGGSFTACTAIYDTMQFIKPDVQTVCIGQAASAAAILLGAGAKGKRMALPNSRILIH 124

Query: 139 QP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP + G  GQ SDIE  A +I++++  L ++   + GK+ +EV   ++RD I++A++A +
Sbjct: 125 QPYTEGTFGQTSDIEIQANEILRMRELLEKMIADHSGKSMDEVSHDIERDKILTAAQAVE 184

Query: 198 WGVVDKVLMS 207
           +G++D VL S
Sbjct: 185 YGLIDSVLES 194


>gi|297562336|ref|YP_003681310.1| endopeptidase Clp [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
 gi|296846784|gb|ADH68804.1| Endopeptidase Clp [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
          Length = 210

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 82/176 (46%), Positives = 122/176 (69%)

Query: 38  RLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97
           RLL++RIVF+  Q++D +A  +  +LL L AE+ Q++I++YINSPGG VTAGMAIYD MQ
Sbjct: 30  RLLRQRIVFLGQQVDDEIANRLVGELLLLSAEDRQRDITMYINSPGGSVTAGMAIYDVMQ 89

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
           +I   + T  +G AASMG +LL AG  G R+ALP+ R+++HQPSGG  G ASDI   A  
Sbjct: 90  YIPNDVRTVGIGMAASMGQMLLCAGAPGKRYALPHTRVMMHQPSGGIGGTASDIRILADQ 149

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
           ++ +K+   E   ++ G+T E++EK  DRD   +A E+ ++G +D+VL   +D+ +
Sbjct: 150 LLYVKKMFIEKISEHTGQTVEQIEKDADRDRWFTAKESKEYGFIDEVLEGTLDVTQ 205


>gi|239931288|ref|ZP_04688241.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           ghanaensis ATCC 14672]
 gi|291439661|ref|ZP_06579051.1| ATP-dependent Clp protease proteolytic subunit 4 [Streptomyces
           ghanaensis ATCC 14672]
 gi|291342556|gb|EFE69512.1| ATP-dependent Clp protease proteolytic subunit 4 [Streptomyces
           ghanaensis ATCC 14672]
          Length = 226

 Score =  176 bits (446), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 88/192 (45%), Positives = 139/192 (72%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T++G R YD Y++L +ER++F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 27  VIPRFVERTSQGIREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISV 86

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ++KP I T CMGQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 87  YINSPGGSFTALTAIYDTMQYVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLI 146

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP S    GQ SD+E  A +I++++ +L E+  K+  +  +++ + ++RD I++A +A 
Sbjct: 147 HQPYSETGRGQVSDLEIAANEILRMRTQLEEMLAKHSTRPIDKIREDIERDKILTAEDAL 206

Query: 197 DWGVVDKVLMSR 208
            +G++D+++ +R
Sbjct: 207 QYGLIDQIITTR 218


>gi|307328455|ref|ZP_07607630.1| Endopeptidase Clp [Streptomyces violaceusniger Tu 4113]
 gi|306885867|gb|EFN16878.1| Endopeptidase Clp [Streptomyces violaceusniger Tu 4113]
          Length = 218

 Score =  176 bits (446), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 92/192 (47%), Positives = 137/192 (71%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP  VE+T++G R YD Y++L +ER++F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 20  VVPRFVERTSQGIREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISV 79

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTM+F+KP I T CMGQAAS  ++LL+AG  G R ALPNARIL+
Sbjct: 80  YINSPGGSFTALTAIYDTMEFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARILI 139

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP S    GQ SD+E  A +I++++ +L E+  K+     E++   ++RD I++A E+ 
Sbjct: 140 HQPYSETGRGQVSDLEIAANEILRMRSQLEEMLAKHSTTPIEKIRDDIERDKILTAEESL 199

Query: 197 DWGVVDKVLMSR 208
            +G+VD+++ +R
Sbjct: 200 AYGLVDQIVSTR 211


>gi|29831991|ref|NP_826625.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           avermitilis MA-4680]
 gi|67460533|sp|Q82CA5|CLPP4_STRAW RecName: Full=ATP-dependent Clp protease proteolytic subunit 4;
           AltName: Full=Endopeptidase Clp 4
 gi|29609109|dbj|BAC73160.1| putative ATP-dependent Clp protease proteolytic subunit 2
           [Streptomyces avermitilis MA-4680]
          Length = 226

 Score =  176 bits (446), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 89/192 (46%), Positives = 138/192 (71%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T++G R YD Y++L +ER++F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 27  VIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISV 86

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQF+KP I T CMGQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 87  YINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNARVLI 146

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP S    GQ SD+E  A +I++++ +L ++  K+     E++ + ++RD I++A +A 
Sbjct: 147 HQPYSETGRGQVSDLEIAANEILRMRSQLEDMLAKHSTTPIEKIREDIERDKILTAEDAL 206

Query: 197 DWGVVDKVLMSR 208
            +G++D+++ +R
Sbjct: 207 AYGLIDQIISTR 218


>gi|111223669|ref|YP_714463.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
           [Frankia alni ACN14a]
 gi|111151201|emb|CAJ62912.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
           (partial match) [Frankia alni ACN14a]
          Length = 204

 Score =  176 bits (446), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 84/171 (49%), Positives = 116/171 (67%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           ++ RLL+ RIVF+   +ED +A  I A+LL L AE+P  +I LYINSPGG V+AGMAIYD
Sbjct: 1   MFGRLLENRIVFLGAVVEDAVANAISAKLLLLAAEDPTSDIHLYINSPGGSVSAGMAIYD 60

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ++   ++T  +G A SMG  LL AG  G R+ALP+ARI++HQP GG  G A+DI   
Sbjct: 61  TMQYVGNDVATVALGFAGSMGQFLLCAGAAGKRYALPHARIMMHQPHGGIGGTAADISIQ 120

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+ ++  KR L +    + G+T E++E   DRD   +A EA D+G+VD V+
Sbjct: 121 AEQMLYTKRTLQQRIAFHSGQTVEQIEADSDRDRWFTAEEARDYGLVDHVV 171


>gi|134097947|ref|YP_001103608.1| ATP-dependent Clp protease proteolytic subunit [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291009143|ref|ZP_06567116.1| ATP-dependent Clp protease proteolytic subunit [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133910570|emb|CAM00683.1| ATP-dependent Clp protease proteolytic subunit 2 [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 210

 Score =  176 bits (446), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 85/192 (44%), Positives = 138/192 (71%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T  G +  + Y++L +ERIVF+  Q++D  A  + AQLLFLE+++P +EI +
Sbjct: 12  VLPSFVERTAYGVKESNPYNKLFEERIVFLGVQVDDASANDVMAQLLFLESDDPDREIQI 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA MAIYDT+Q+++P + T C+GQAAS  +++L+AG KG R ALPN+R+L+
Sbjct: 72  YINSPGGSFTALMAIYDTIQYVRPDVRTICLGQAASAAAVILAAGTKGKRLALPNSRMLI 131

Query: 138 HQPSG-GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+  G  GQ SD+E  A ++ +++ ++     ++  +T E+V K ++RD I++A +A 
Sbjct: 132 HQPATEGIYGQVSDLEIQAAEVQRMRDQMEATLARHTNRTQEQVRKDVERDKILTADQAV 191

Query: 197 DWGVVDKVLMSR 208
           ++G++D+VL  R
Sbjct: 192 EYGIIDEVLPYR 203


>gi|325963648|ref|YP_004241554.1| ATP-dependent Clp protease proteolytic subunit ClpP [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323469735|gb|ADX73420.1| ATP-dependent Clp protease proteolytic subunit ClpP [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 219

 Score =  176 bits (446), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 92/193 (47%), Positives = 136/193 (70%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++RI+F+  Q++D  A  I AQLL LE+ +P ++I+L
Sbjct: 18  VLPQFEERTPYGFKRQDPYTKLFEDRIIFLGVQVDDASADDIMAQLLVLESTDPDRDITL 77

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+I+P I T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 78  YINSPGGSFTAMTAIYDTMQYIRPEIQTVCLGQAASAAAVLLAAGTPGKRLALPNARVLI 137

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASD+E  A ++++++  L +    + G+T E+V   ++RD I++A EA
Sbjct: 138 HQPALSGGQGGQASDLEIQAAEVMRMRSWLEDTLAHHSGRTSEQVNNDIERDKILTAEEA 197

Query: 196 CDWGVVDKVLMSR 208
             +G++D+VL SR
Sbjct: 198 QVYGLIDQVLDSR 210


>gi|300788576|ref|YP_003768867.1| protease subunit of ATP-dependent Clp protease [Amycolatopsis
           mediterranei U32]
 gi|299798090|gb|ADJ48465.1| protease subunit of ATP-dependent Clp protease [Amycolatopsis
           mediterranei U32]
          Length = 217

 Score =  176 bits (446), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 88/192 (45%), Positives = 138/192 (71%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T+ G +  + Y++L +ER++F+  Q++D  A  + AQLL LE E+P ++I +
Sbjct: 21  ILPSYVERTSYGVKESNPYNKLYEERVIFLGVQVDDASANDVMAQLLHLEHEDPDRDILI 80

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQF++P I T+C+GQAAS  ++LLSAG  G R+ALPN+R+L+
Sbjct: 81  YINSPGGSFTSLMAIYDTMQFVRPDIQTYCLGQAASAAAVLLSAGTPGKRYALPNSRVLI 140

Query: 138 HQPSG-GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+  G  GQ SD+E  A +I +++R++  I   + GK  +++ K ++RD I++A EA 
Sbjct: 141 HQPATEGTYGQVSDLEIQANEIQRVRRQMEVILAHHTGKDADQIRKDIERDKILTAEEAK 200

Query: 197 DWGVVDKVLMSR 208
            +G++D+VL  R
Sbjct: 201 SYGIIDEVLPYR 212


>gi|152968201|ref|YP_001363985.1| ATP-dependent Clp protease proteolytic subunit [Kineococcus
           radiotolerans SRS30216]
 gi|151362718|gb|ABS05721.1| Endopeptidase Clp [Kineococcus radiotolerans SRS30216]
          Length = 240

 Score =  176 bits (446), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 85/192 (44%), Positives = 121/192 (63%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           PM    T  G     +  RLL +RIV +  +++D +A  ICAQLL L A++P+ +I+LY+
Sbjct: 35  PMSTPTTTTGPFDDQLSQRLLFQRIVVLGQEVDDAVANRICAQLLLLSADDPRSDIALYV 94

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG ++AG+AIYDTM+ I   +ST  MG AASMG  LL AG  G R+ALP+AR+++HQ
Sbjct: 95  NSPGGSISAGLAIYDTMRLIPNDVSTLVMGMAASMGQFLLCAGTAGKRYALPHARVMMHQ 154

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           PSGG  G A+DI   A+++   K  +  +  ++ G+  E VE    RD   +A EA  +G
Sbjct: 155 PSGGIGGTAADIAIQAENLAHTKATMQRLIAEHTGQDVETVELDSQRDRWFTAEEALAYG 214

Query: 200 VVDKVLMSRIDI 211
           VVD V+    D+
Sbjct: 215 VVDHVVTGVSDV 226


>gi|328882450|emb|CCA55689.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           venezuelae ATCC 10712]
          Length = 205

 Score =  176 bits (446), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 85/171 (49%), Positives = 118/171 (69%), Gaps = 1/171 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y+RLL ERI+F+  Q++D +A  I AQ+L L A+ P K+I LYINSPGG VTAGMA+YD
Sbjct: 22  VYNRLLGERIIFLGQQVDDEIANKITAQMLLLAAD-PDKDIYLYINSPGGSVTAGMAVYD 80

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ+I   + T  MG AASMG  LL+ G  G RFALPN  IL+HQ S G  G ASDI+  
Sbjct: 81  TMQYIPNDVVTIGMGMAASMGQFLLTGGTPGKRFALPNTDILMHQGSAGIGGTASDIKIQ 140

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+ +++ K+R+ EI   + G+T E + +  DRD   +A EA ++G++D ++
Sbjct: 141 AEYLLRTKQRMAEITAHHSGQTVEAIIRDGDRDRWFTADEAKEYGLIDDII 191


>gi|227833713|ref|YP_002835420.1| ATP-dependent Clp protease proteolytic subunit 2 [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262184720|ref|ZP_06044141.1| ATP-dependent Clp protease proteolytic subunit 2 [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454729|gb|ACP33482.1| ATP-dependent Clp protease proteolytic subunit 2 [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 207

 Score =  176 bits (445), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 88/192 (45%), Positives = 136/192 (70%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +EQ  +G ++ + YS+L +ERI+F+  Q++D  A  I AQLL LE+++P ++I++
Sbjct: 12  VLPEFIEQNAQGSKTTNPYSKLFEERIIFLGTQVDDTSANDIMAQLLVLESQDPDRDITM 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA MAIYDTM++++P + T C+GQAAS  ++LL+AG  G R ALPN+R+L+
Sbjct: 72  YINSPGGSFTALMAIYDTMRYVRPDVQTVCLGQAASAAAVLLAAGAPGKRAALPNSRVLI 131

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP + G  GQ SD+E  A +I +++R + E   ++ G+T E+V    DRD I++A EA 
Sbjct: 132 HQPRTQGTQGQVSDLEIEANEIERMRRLMEETLAEHTGRTAEQVRIDTDRDKILTAQEAV 191

Query: 197 DWGVVDKVLMSR 208
           D+G++D V   R
Sbjct: 192 DYGLIDTVFDYR 203


>gi|254798629|ref|YP_003058293.1| proteolytic subunit 2 of clp protease [Parachlorella kessleri]
 gi|229915577|gb|ACQ90920.1| proteolytic subunit 2 of clp protease [Parachlorella kessleri]
          Length = 202

 Score =  176 bits (445), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 75/171 (43%), Positives = 119/171 (69%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+ G+++D +A  +   +L+L AE   K I +YINSPGG VT G+A+Y
Sbjct: 22  DLYNRLYRERVLFLCGELDDELANQLIGIMLYLNAEEKNKGIYIYINSPGGSVTCGIAVY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M +IK  ++T C+G AASM S +L+ G  G R ALP++RI++HQP GG  GQAS++  
Sbjct: 82  DAMNYIKSEVTTICVGTAASMASFILAGGAYGKRIALPHSRIMIHQPEGGSQGQASEVLS 141

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            +Q++++I+R +  IY +  G+    + + +DRD  MSA E  ++G+VD+V
Sbjct: 142 ESQEVMRIRREVGRIYAERTGQPLSRISRDMDRDQFMSARETKEYGIVDQV 192


>gi|322794945|gb|EFZ17835.1| hypothetical protein SINV_12459 [Solenopsis invicta]
          Length = 130

 Score =  176 bits (445), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 77/130 (59%), Positives = 107/130 (82%)

Query: 51  IEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQ 110
           + D +A+ + AQLLFL++E+ +  I LYINSPGG VTAG+ IYDTMQ++ PPIST+C+GQ
Sbjct: 1   VTDVVASAVIAQLLFLQSESSKNPIHLYINSPGGSVTAGLGIYDTMQYVLPPISTWCVGQ 60

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYV 170
           A SM SLLL+AG KGMR +LPNARI++HQPSGG  GQA+DI+  A +I+K+K+++NE+YV
Sbjct: 61  ACSMASLLLAAGTKGMRHSLPNARIMIHQPSGGVQGQATDIQIQATEILKLKQQINELYV 120

Query: 171 KNCGKTYEEV 180
           K+ G+  +E+
Sbjct: 121 KHTGQNLDEI 130


>gi|239979446|ref|ZP_04701970.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces albus
           J1074]
 gi|291451316|ref|ZP_06590706.1| ATP-dependent Clp protease proteolytic subunit 4 [Streptomyces
           albus J1074]
 gi|291354265|gb|EFE81167.1| ATP-dependent Clp protease proteolytic subunit 4 [Streptomyces
           albus J1074]
          Length = 227

 Score =  176 bits (445), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 90/192 (46%), Positives = 137/192 (71%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP  VE+T++G R YD Y++L +ER++F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 30  IVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESIDPDRDISI 89

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQF+KP I T CMGQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 90  YINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGSPGKRMALPNARVLI 149

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP S    GQ SD+E  A +I++++ +L E+  K+     +++   ++RD I++A +A 
Sbjct: 150 HQPYSETGRGQVSDLEIAANEILRMRAQLEEMLAKHSTTPLDKIRDDIERDKILTAEDAL 209

Query: 197 DWGVVDKVLMSR 208
            +G++D+++ +R
Sbjct: 210 AYGLIDQIVSTR 221


>gi|307109118|gb|EFN57356.1| hypothetical protein CHLNCDRAFT_142728 [Chlorella variabilis]
          Length = 267

 Score =  176 bits (445), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 85/192 (44%), Positives = 127/192 (66%), Gaps = 2/192 (1%)

Query: 14  VFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQK 73
           +  G  P++  +T   + + D +  LL++RIVF  G++ D  A  I +QLL L+A++P K
Sbjct: 57  IIAGQQPILSPRTQ--DMAGDPFGLLLRQRIVFFGGEVNDFSADAIISQLLLLDAQDPTK 114

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I ++INSPGG VTAGM IYD M   +  + T+C G AASMG+ LL AG +G R+++PNA
Sbjct: 115 DIKMFINSPGGSVTAGMGIYDAMMMCRADVQTYCFGLAASMGAFLLGAGTRGKRYSMPNA 174

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           RI++HQP GG SG A DIE  A++I+  K  LN I  +  G+  E++E+  DRD  MS  
Sbjct: 175 RIMIHQPLGGASGAAVDIEIQAKEIMYHKANLNRIMSQYTGQPIEKIEEDTDRDRYMSPL 234

Query: 194 EACDWGVVDKVL 205
           EA ++G++D ++
Sbjct: 235 EAKNYGLIDSLV 246


>gi|258655306|ref|YP_003204462.1| endopeptidase Clp [Nakamurella multipartita DSM 44233]
 gi|258558531|gb|ACV81473.1| Endopeptidase Clp [Nakamurella multipartita DSM 44233]
          Length = 203

 Score =  176 bits (445), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 83/190 (43%), Positives = 135/190 (71%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP V+E+T  GER  D++SRLL +RI+++  +I+D +A +I AQLL LE++NP  EI LY
Sbjct: 6   VPTVIERTPAGERVVDVFSRLLSDRIIYLGTEIDDDVANVIVAQLLHLESDNPDAEIGLY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG ++A  A+YDTMQF++ P++T C+GQAAS  ++LL+AG  G R  LP+ R+LLH
Sbjct: 66  INSPGGSMSAMTAVYDTMQFVRAPVATTCVGQAASAAAILLAAGAPGRRAVLPHTRVLLH 125

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPS G  GQ SD+   A+++++++ ++ ++  ++ G+    + +  DRD + +A +A  +
Sbjct: 126 QPSTGGEGQISDLTLQARELLRVREQMEQVLARHTGQDVATLRRDTDRDKVFTAEQAVAY 185

Query: 199 GVVDKVLMSR 208
           G+ D ++ +R
Sbjct: 186 GLADLIVSAR 195


>gi|297198068|ref|ZP_06915465.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sviceus ATCC 29083]
 gi|197714242|gb|EDY58276.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sviceus ATCC 29083]
          Length = 211

 Score =  176 bits (445), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 84/193 (43%), Positives = 132/193 (68%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T+ G++S D YS+LL+ERIVF+  QI+D  A  + AQ ++LE ++P ++I+L
Sbjct: 9   VLPEFHERTSFGQKSMDPYSKLLEERIVFLGTQIDDTSANDLMAQFMYLEYQDPDRDIAL 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  +A  AIYDTMQ++   + T C+GQA S  ++LL+AG  G R  LP AR+++
Sbjct: 69  YINSPGGSFSAMSAIYDTMQYVSCDVETTCLGQAGSSAAVLLAAGTPGKRSVLPGARVVI 128

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  S    GQASD+   A ++++++ RL E+ V++ G++ E+V   ++RD I+ A  A
Sbjct: 129 HQPALSEPVQGQASDLAIQADELLRVRARLEEMLVRHTGRSPEQVSADIERDRILDAQGA 188

Query: 196 CDWGVVDKVLMSR 208
            D G+ D ++ SR
Sbjct: 189 LDHGLADAIVPSR 201


>gi|238062970|ref|ZP_04607679.1| endopeptidase Clp [Micromonospora sp. ATCC 39149]
 gi|237884781|gb|EEP73609.1| endopeptidase Clp [Micromonospora sp. ATCC 39149]
          Length = 216

 Score =  176 bits (445), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 91/207 (43%), Positives = 128/207 (61%), Gaps = 13/207 (6%)

Query: 3   FEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQ 62
            E    K +ED F+G +  VV+            +RLL +RI+ +  +++D +A  ICAQ
Sbjct: 21  IEAHVAKTAED-FVGPIDTVVQ------------NRLLGKRIIVLGSELDDSVANRICAQ 67

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           LL L +E+P+ +I LYINSPGG VTAGMAIYDTMQ +   ++T  MG  ASMG  LL AG
Sbjct: 68  LLILSSEDPRADIQLYINSPGGSVTAGMAIYDTMQSVPNDVATVAMGMTASMGQFLLCAG 127

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
            +G R+ALP+A I++HQPSGG +G ASD+   A  ++  KR   E    + G+  E +E 
Sbjct: 128 ARGKRYALPHASIMMHQPSGGIAGTASDVAIRAAQLLYTKRVCQERIAFHTGQPVERIEA 187

Query: 183 TLDRDHIMSASEACDWGVVDKVLMSRI 209
             DRD   +A EA D+G++D VL  ++
Sbjct: 188 DSDRDRWFTAEEAKDYGLIDHVLHRKV 214


>gi|294634100|ref|ZP_06712655.1| Clp protease [Streptomyces sp. e14]
 gi|292829914|gb|EFF88268.1| Clp protease [Streptomyces sp. e14]
          Length = 212

 Score =  175 bits (444), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 82/182 (45%), Positives = 123/182 (67%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           + ++LL +RIVF+  Q+++  A  +CAQLL L AE+P+ +I+L INSPGG VTAG+AIYD
Sbjct: 25  LAAQLLAQRIVFLGTQVDEVSANRVCAQLLLLSAEDPRTDIALCINSPGGSVTAGLAIYD 84

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ +   +ST  MG AASMG  LL+ G  G RFALP+ARI++HQPS G  G  +DIE  
Sbjct: 85  TMQLVPNDVSTLAMGFAASMGQFLLTVGTPGKRFALPHARIMMHQPSAGIGGTTADIEIQ 144

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           A+++   KR +  +  ++ G++ E + +  DRD   +A +A ++G+VD+V+ S  D+   
Sbjct: 145 AENLEYTKRTMERLTARHTGQSEETIARDGDRDRWFTAEQAREYGMVDRVVDSLADVRPA 204

Query: 215 SK 216
           + 
Sbjct: 205 TS 206


>gi|297199670|ref|ZP_06917067.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sviceus ATCC 29083]
 gi|197713960|gb|EDY57994.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sviceus ATCC 29083]
          Length = 226

 Score =  175 bits (444), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 88/192 (45%), Positives = 138/192 (71%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T++G R YD Y++L +ER++F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 27  VIPRFVERTSQGIREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISV 86

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQF+KP + T CMGQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 87  YINSPGGSFTALTAIYDTMQFVKPDVQTVCMGQAASAAAILLAAGTPGKRMALPNARVLI 146

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP S    GQ SD+E  A +I++++ +L ++  K+     E++ + ++RD I++A +A 
Sbjct: 147 HQPYSETGRGQVSDLEIAANEILRMRAQLEDLLAKHSTTPIEKIREDIERDKILTADDAL 206

Query: 197 DWGVVDKVLMSR 208
            +G++D+++ +R
Sbjct: 207 AYGLIDQIISTR 218


>gi|291297752|ref|YP_003509030.1| endopeptidase Clp [Stackebrandtia nassauensis DSM 44728]
 gi|290566972|gb|ADD39937.1| Endopeptidase Clp [Stackebrandtia nassauensis DSM 44728]
          Length = 204

 Score =  175 bits (444), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 85/192 (44%), Positives = 126/192 (65%), Gaps = 1/192 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P   E    G     + +RLL++RI+ +  +++D +A  +CAQLL L AEN + +ISLY
Sbjct: 1   MPSATETPPIGTADDQLSARLLRQRIIVLGTEVDDQVANRLCAQLLLLSAENSRDDISLY 60

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG V+AGMAIYDTM+ I   + T  MG AASMG +LL AG  G R++LPN+ +LLH
Sbjct: 61  INSPGGSVSAGMAIYDTMRLIPNDVRTVAMGLAASMGQVLLCAGTAGKRYSLPNSHVLLH 120

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           Q S GF G A+D+E +A  + ++  R+ E+  ++ G+  E+VEK   RD    A+EA ++
Sbjct: 121 QGSAGFGGTAADVEIYAGHLERVSARMTELVARHTGQPVEKVEKDSLRDRWFDAAEALEY 180

Query: 199 GVVDKVLMSRID 210
           G +D ++  R+D
Sbjct: 181 GFIDHIV-ERMD 191


>gi|242040043|ref|XP_002467416.1| hypothetical protein SORBIDRAFT_01g027680 [Sorghum bicolor]
 gi|241921270|gb|EER94414.1| hypothetical protein SORBIDRAFT_01g027680 [Sorghum bicolor]
          Length = 289

 Score =  175 bits (444), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 83/172 (48%), Positives = 117/172 (68%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+   LL+ERIVF+  +IED +A  + +QLL L+A +P  +I L++NSPGG ++A MAIY
Sbjct: 76  DVMGLLLRERIVFLGNEIEDFLADAVVSQLLLLDAIDPDSDIRLFVNSPGGSLSATMAIY 135

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D MQ ++  +ST  MG A S  S++L  G KG RFA+PN RI++HQP GG SGQA D+E 
Sbjct: 136 DVMQLVRADVSTIGMGIAGSTASIILGGGTKGKRFAMPNTRIMIHQPVGGASGQALDVEV 195

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            A++I+  KR +  I     G+T E+VEK +DRD  M   EA D+G++D V+
Sbjct: 196 QAKEILTNKRNVIRIVSGFTGRTLEQVEKDIDRDRYMGPLEAVDYGLIDGVI 247


>gi|302832604|ref|XP_002947866.1| hypothetical protein VOLCADRAFT_103638 [Volvox carteri f.
           nagariensis]
 gi|300266668|gb|EFJ50854.1| hypothetical protein VOLCADRAFT_103638 [Volvox carteri f.
           nagariensis]
          Length = 347

 Score =  175 bits (444), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 84/186 (45%), Positives = 125/186 (67%), Gaps = 2/186 (1%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P+V  +T   E   D +  LL++RIVF+ G++ED  A  + +QLL L++++P K+I ++I
Sbjct: 58  PIVAPRT--AEMQGDPFGLLLRQRIVFLGGEVEDFGADALISQLLLLDSQDPTKDIKMFI 115

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VTAGM IYD M   +  + T+C G AASMG+ LL AG++G R ++PN+RI++HQ
Sbjct: 116 NSPGGSVTAGMGIYDAMMLCRADVHTYCFGLAASMGAFLLGAGKRGKRHSMPNSRIMIHQ 175

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG SGQA DIE  A++I+  K  LN I     G+   ++E+  DRD  MS  EA ++G
Sbjct: 176 PLGGASGQAVDIEIQAKEIMYHKANLNRIMADYTGQPLAKIEEDTDRDRYMSPLEAKEYG 235

Query: 200 VVDKVL 205
           ++D ++
Sbjct: 236 IIDHIV 241


>gi|290960371|ref|YP_003491553.1| ATP dependent Clp protease proteolytic subunit 2 [Streptomyces
           scabiei 87.22]
 gi|260649897|emb|CBG73013.1| ATP dependent Clp protease proteolytic subunit 2 [Streptomyces
           scabiei 87.22]
          Length = 226

 Score =  175 bits (444), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 89/192 (46%), Positives = 138/192 (71%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T++G R YD Y++L +ER++F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 27  VIPRFVERTSQGIREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISV 86

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQF+KP I T CMGQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 87  YINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNARVLI 146

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP S    GQ SD+E  A +I++++ +L ++  K+     E++ + ++RD I++A +A 
Sbjct: 147 HQPYSETGRGQVSDLEIAANEILRMRGQLEDMLAKHSTTPIEKIREDIERDKILTAEDAL 206

Query: 197 DWGVVDKVLMSR 208
            +G++D+++ +R
Sbjct: 207 SYGLIDQIISTR 218


>gi|224128302|ref|XP_002320293.1| predicted protein [Populus trichocarpa]
 gi|222861066|gb|EEE98608.1| predicted protein [Populus trichocarpa]
          Length = 168

 Score =  175 bits (444), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 79/157 (50%), Positives = 116/157 (73%)

Query: 55  MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASM 114
           MA +I AQLL+L+A +P K+I +Y+NSPGG VTAGMAI+DTM+ I+P +ST C+G AASM
Sbjct: 1   MANIIVAQLLYLDAVDPNKDIVMYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASM 60

Query: 115 GSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCG 174
           G+ LLSAG KG R++LPN+RI++HQP GG  G  SDI+  A +++  K  LN     + G
Sbjct: 61  GAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDIQANEMLHHKANLNGYLAYHTG 120

Query: 175 KTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           ++ E++ +  DRD+ MSA EA D+G++D V+++ + +
Sbjct: 121 QSLEKINQDTDRDYFMSAKEAKDYGLIDGVILNPLKV 157


>gi|126348112|emb|CAJ89833.1| putative ATP-dependent Clp protease proteolytic subunit 1
           [Streptomyces ambofaciens ATCC 23877]
          Length = 217

 Score =  175 bits (443), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 85/177 (48%), Positives = 119/177 (67%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           + ++LL +RIV +  Q+++  A  +CAQLL L AE+P+ +ISLYINSPGG V AG+AIYD
Sbjct: 30  LAAQLLTQRIVLLGTQVDEVSANRVCAQLLILSAEDPRTDISLYINSPGGSVHAGLAIYD 89

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM+ I   +ST  MG AASMG  LLS G  G R ALPNARI++HQPS G  G  +DIE  
Sbjct: 90  TMRLIPNDVSTLAMGFAASMGQFLLSVGAAGKRHALPNARIMMHQPSAGIGGTTADIEIQ 149

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           A ++   KR +  I  ++ G++ E + +  DRD   +A EA ++G+VD+V+ S  D+
Sbjct: 150 ADNLEFTKRTIERITAEHTGQSPETISRDGDRDRWFTAEEAKEYGMVDQVVQSLADV 206


>gi|262201987|ref|YP_003273195.1| endopeptidase Clp [Gordonia bronchialis DSM 43247]
 gi|262085334|gb|ACY21302.1| Endopeptidase Clp [Gordonia bronchialis DSM 43247]
          Length = 227

 Score =  175 bits (443), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 89/193 (46%), Positives = 132/193 (68%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +E T  G+R YD Y++L +ERIVFV   I+  +A  + AQLL LE+++P ++I++
Sbjct: 28  ILPQFIEHTPNGQRQYDPYAKLFEERIVFVGTPIDQTVANDVMAQLLVLESQDPDRDITM 87

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V   +AIYDTMQ++   I T C+G+AAS  ++LL+ G  G R ALPNA IL+
Sbjct: 88  YINSPGGSVPDMLAIYDTMQYVHCDIVTVCLGEAASAAAILLAGGTPGKRAALPNATILI 147

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP   G + GQ SD+E  A +I +I+ RL+EI   + G+  E++ K  DRD+I++A  A
Sbjct: 148 HQPRTGGAYQGQVSDLEIQAAEIERIRNRLDEILAGHTGQPAEKIRKDTDRDNILTAEAA 207

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD+V   R
Sbjct: 208 KEYGIVDEVFEYR 220


>gi|257068142|ref|YP_003154397.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Brachybacterium faecium DSM 4810]
 gi|256558960|gb|ACU84807.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Brachybacterium faecium DSM 4810]
          Length = 233

 Score =  175 bits (443), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 93/194 (47%), Positives = 138/194 (71%), Gaps = 3/194 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++RI+F+  Q++D  A  + AQLL LE+++P ++I+L
Sbjct: 31  VLPQYEERTAYGMKRQDPYTKLFEDRIIFLGVQVDDASADDVMAQLLVLESQDPDRDITL 90

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+IKP ++T C+GQAAS  ++LL+AG  G R ALPNARIL+
Sbjct: 91  YINSPGGSFTALTAIYDTMQYIKPEVTTVCLGQAASAAAVLLAAGSPGKRLALPNARILI 150

Query: 138 HQPS---GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           HQP+    G  GQASD+E  A +I++++  L E    + G+T E+V K ++RD I++A  
Sbjct: 151 HQPAMGGEGGGGQASDLEIQANEIMRMREWLEETLAHHSGRTKEQVSKDIERDKILTAKA 210

Query: 195 ACDWGVVDKVLMSR 208
           A ++G+VD+VL SR
Sbjct: 211 ALEYGLVDQVLESR 224


>gi|289645297|ref|ZP_06477293.1| Endopeptidase Clp [Frankia symbiont of Datisca glomerata]
 gi|289504893|gb|EFD25995.1| Endopeptidase Clp [Frankia symbiont of Datisca glomerata]
          Length = 201

 Score =  175 bits (443), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 83/177 (46%), Positives = 118/177 (66%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           ++ RLL+ RIVF+   +ED +A  ICA+LL L AE+ +++I LYINSPGG V+AGMAIYD
Sbjct: 18  VFDRLLRSRIVFLGSVVEDAVANEICAKLLLLSAEDRERDIQLYINSPGGSVSAGMAIYD 77

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ++   + T  +G A SMG  LL AG  G R+AL +A++++HQPSGG  G ASDI   
Sbjct: 78  TMQYVTNDVVTVALGFAGSMGQFLLCAGAAGKRYALAHAQVMMHQPSGGLGGTASDIAIQ 137

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
            +  +  KR + E    + G+T E++E+  DRD   +A EA D+G VD V+ +  D+
Sbjct: 138 LEQTLYTKRTIQERIAFHTGRTVEQIERDSDRDRWFTAREARDYGFVDHVVTAAADL 194


>gi|331268128|ref|YP_004347777.1| ATP-dependent Clp protease proteolytic subunit [Chlorella
           variabilis]
 gi|325296305|gb|ADZ05025.1| ATP-dependent Clp protease proteolytic subunit [Chlorella
           variabilis]
          Length = 201

 Score =  175 bits (443), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 73/171 (42%), Positives = 122/171 (71%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  +++D +A  +   +L+L AE   K + +YINSPGG VT G+A+Y
Sbjct: 22  DLYNRLYRERVLFLCQELDDELANQLIGIMLYLNAEEQNKGLYIYINSPGGSVTCGIAVY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M +IK  ++T C+G AASM S +L+ G++G R ALP++RI++HQP GG  GQAS++  
Sbjct: 82  DAMNYIKSEVTTICVGTAASMASFILAGGDRGKRIALPHSRIMIHQPEGGSQGQASEVLS 141

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            ++++++I+R++  IY +  G+    + + +DRD  +SA EA D+G+VD+V
Sbjct: 142 ESEEVMRIRRQVGRIYSERTGQALSRISRDMDRDQFLSAREAKDYGLVDQV 192


>gi|225010913|ref|ZP_03701380.1| Endopeptidase Clp [Flavobacteria bacterium MS024-3C]
 gi|225004960|gb|EEG42915.1| Endopeptidase Clp [Flavobacteria bacterium MS024-3C]
          Length = 181

 Score =  175 bits (443), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 85/171 (49%), Positives = 121/171 (70%), Gaps = 1/171 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I  + L+ER VF+ GQ++D  A  +  +LL+L+ +N   EI L INSPGG VT+G AIYD
Sbjct: 12  IEEKFLEERKVFLWGQVDDASAKHVIDRLLYLDLQN-NNEIQLVINSPGGYVTSGFAIYD 70

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           T++ +K P+ST C G AASMGS+LLSAG KG RF  P+A++++HQPSGG  GQAS+IE  
Sbjct: 71  TIKSLKSPVSTVCSGLAASMGSILLSAGAKGRRFMQPHAQVMIHQPSGGARGQASNIEIQ 130

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A++I+K +    +I   NCG+  ++V K  DRD+ M+A E+  +G+VD +L
Sbjct: 131 AREIIKTRELSAQILADNCGQKVDKVMKDFDRDYWMNAEESLAYGIVDAML 181


>gi|302542936|ref|ZP_07295278.1| Clp protease [Streptomyces hygroscopicus ATCC 53653]
 gi|302460554|gb|EFL23647.1| Clp protease [Streptomyces himastatinicus ATCC 53653]
          Length = 217

 Score =  175 bits (443), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 82/177 (46%), Positives = 121/177 (68%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           + ++LL +RIVF+  Q+++  A  +CAQLL L AE+P+ +ISLYINSPGG VTAG+AIYD
Sbjct: 30  LAAQLLTQRIVFLGTQVDEVSANRVCAQLLLLSAEDPRTDISLYINSPGGSVTAGLAIYD 89

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM+ I   ++T  MG AASMG  LL+ G  G R+ALPNARI++HQPS G  G  +DI   
Sbjct: 90  TMRLIPNDVATLAMGFAASMGQFLLTVGTAGKRYALPNARIMMHQPSAGIGGTTADIAIQ 149

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           A+++   K+ +  I  ++ G+T E + +  DRD   +A +A ++G+VD ++ S  D+
Sbjct: 150 AENLEFTKKAIERITAEHTGQTQETISRDGDRDRWFTAEQAKEYGMVDSIVESLSDV 206


>gi|255583777|ref|XP_002532641.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis]
 gi|223527632|gb|EEF29744.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis]
          Length = 334

 Score =  174 bits (442), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 80/172 (46%), Positives = 121/172 (70%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D  + LL++RI+F+  Q++D  A  + +QLLFL+AE+P K+I L+INSPGG VTAG+ IY
Sbjct: 92  DTTNMLLRQRIIFLGSQVDDMTADFVISQLLFLDAEDPTKDIKLFINSPGGSVTAGLGIY 151

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M+  K  +ST C+G AASMG+ LL+AG KG RF +PN R+++HQP G   G+A+++  
Sbjct: 152 DAMKLCKADVSTICLGLAASMGAFLLAAGTKGKRFCMPNGRVMIHQPLGTAGGKATEMSI 211

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
             +++   K +LN+I  +  GK  E++E   DRD+ MSA EA ++G++D V+
Sbjct: 212 RIREMNYHKIKLNKILSRATGKPVEQIEVDTDRDNFMSAWEAKEYGLIDVVI 263


>gi|4454056|emb|CAA04393.1| ClpP [Arabidopsis thaliana]
          Length = 228

 Score =  174 bits (442), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 84/182 (46%), Positives = 124/182 (68%), Gaps = 1/182 (0%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           E   RG  S D+   LL+ERIVF+   I+D +A  I +QLL L+A++P+K+I L+INSPG
Sbjct: 6   ESAIRGAES-DVMGLLLRERIVFLGSSIDDFVADAIMSQLLLLDAKDPKKDIKLFINSPG 64

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           G ++A MAIYD +Q ++  +ST  +G AAS  S++L AG KG RFA+PN RI++HQP GG
Sbjct: 65  GSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGAGTKGNRFAMPNTRIMIHQPLGG 124

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            SGQA D+E  A++++  K  +  I      +++E+V K +DRD  MS  EA ++G++D 
Sbjct: 125 ASGQAIDVEIQAKEVMHNKNNVTSIIAGCTSRSFEQVLKDIDRDRYMSPIEAVEYGLIDG 184

Query: 204 VL 205
           V+
Sbjct: 185 VI 186


>gi|115483692|ref|NP_001065516.1| Os10g0580800 [Oryza sativa Japonica Group]
 gi|12039365|gb|AAG46151.1|AC018727_3 putative Clp protease [Oryza sativa Japonica Group]
 gi|31433719|gb|AAP55198.1| ATP-dependent Clp protease proteolytic subunit 3, putative,
           expressed [Oryza sativa Japonica Group]
 gi|113640048|dbj|BAF27353.1| Os10g0580800 [Oryza sativa Japonica Group]
 gi|215737516|dbj|BAG96646.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215737683|dbj|BAG96813.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215737745|dbj|BAG96875.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215740822|dbj|BAG96978.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222613342|gb|EEE51474.1| hypothetical protein OsJ_32613 [Oryza sativa Japonica Group]
          Length = 293

 Score =  174 bits (442), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 81/172 (47%), Positives = 117/172 (68%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+   LL+ERIVF+  +IED +A  + +QLL L+A +P  +I L++NSPGG ++A MAIY
Sbjct: 80  DVMGLLLRERIVFLGNEIEDFLADAVVSQLLLLDAVDPNSDIRLFVNSPGGSLSATMAIY 139

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D MQ ++  +ST  +G A S  S++L  G KG RFA+PN RI++HQP GG SGQA D+E 
Sbjct: 140 DVMQLVRADVSTIGLGIAGSTASIILGGGTKGKRFAMPNTRIMIHQPVGGASGQALDVEV 199

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            A++I+  KR +  +     G+T E+VEK +DRD  M   EA D+G++D V+
Sbjct: 200 QAKEILTNKRNVIRLISGFTGRTPEQVEKDIDRDRYMGPLEAVDYGLIDSVI 251


>gi|302528951|ref|ZP_07281293.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sp. AA4]
 gi|302437846|gb|EFL09662.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sp. AA4]
          Length = 217

 Score =  174 bits (442), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 90/192 (46%), Positives = 137/192 (71%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T+ G +  + Y++L +ER +F+  Q++D  A  + AQLL LE E+P ++IS+
Sbjct: 21  ILPSYVERTSYGVKESNPYNKLYEERTIFLGVQVDDASANDVMAQLLHLEHEDPDRDISI 80

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+I+P IST C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 81  YINSPGGSFTSLMAIYDTMQYIRPDISTVCLGQAASAAAVLLAAGTPGKRMALPNARVLI 140

Query: 138 HQPSG-GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+  G  GQ SD+E  A +I +++R++  I  K+  K  +E++  ++RD I++A EA 
Sbjct: 141 HQPATEGTYGQVSDLEIQANEIQRVRRQMEVILAKHTNKEPDEIKADIERDKILTAEEAK 200

Query: 197 DWGVVDKVLMSR 208
            +G++D+VL  R
Sbjct: 201 AYGLIDEVLPYR 212


>gi|326382827|ref|ZP_08204517.1| ATP-dependent Clp protease proteolytic subunit [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326198417|gb|EGD55601.1| ATP-dependent Clp protease proteolytic subunit [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 226

 Score =  174 bits (442), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 86/193 (44%), Positives = 134/193 (69%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +E T  G+R YD Y++L +ERIVFV   I+  +A  + AQLL LE+++P ++I++
Sbjct: 28  ILPSFIENTPNGQRQYDPYAKLFEERIVFVGTPIDQTVANDVMAQLLVLESQDPDRDITM 87

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V   +AIYDTMQ++   + T C+G+AAS  ++LL+ G  G R ALPNA +L+
Sbjct: 88  YINSPGGSVPDMLAIYDTMQYVHCDVMTVCLGEAASAAAILLAGGTPGKRAALPNATVLI 147

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP   G + GQ SD+E  A +I +I++RL+EI   + G+  E++ K  DRD+I++A +A
Sbjct: 148 HQPRTGGAYQGQVSDLEIQAAEIERIRKRLDEILASHTGQDPEKIRKDTDRDNILTADQA 207

Query: 196 CDWGVVDKVLMSR 208
            ++G++D+V   R
Sbjct: 208 KEYGIIDEVFDYR 220


>gi|258655305|ref|YP_003204461.1| endopeptidase Clp [Nakamurella multipartita DSM 44233]
 gi|258558530|gb|ACV81472.1| Endopeptidase Clp [Nakamurella multipartita DSM 44233]
          Length = 211

 Score =  174 bits (442), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 83/181 (45%), Positives = 122/181 (67%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +  RLL +RIV +  Q++D +A  ICAQLL L AE+P+ +ISLYINSPGG V+AG+AI+D
Sbjct: 20  LAGRLLHQRIVVLGQQVDDPIANRICAQLLLLSAEDPRADISLYINSPGGSVSAGLAIFD 79

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM+ I   +ST  MG AASMG  LL+AG  G RFALP++RIL+HQ S G  G A D++  
Sbjct: 80  TMRLIPNDVSTLAMGLAASMGQFLLTAGTPGKRFALPHSRILMHQGSAGIRGTAVDVQIQ 139

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           A+++  +K  ++ +  ++ G+    +E+  DRD   +A +A ++G+VD VL S  D+   
Sbjct: 140 AENLEYVKALMHRLTAEHSGQDVATIERDSDRDRWFTADQAVEYGLVDAVLASTSDVRPA 199

Query: 215 S 215
           +
Sbjct: 200 A 200


>gi|223369879|gb|ACM88806.1| ATP-dependent Clp protease proteolytic subunit [Chlorella
           sorokiniana]
          Length = 201

 Score =  174 bits (442), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 73/171 (42%), Positives = 122/171 (71%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  +++D +A  +   +L+L AE   K + +YINSPGG VT G+A+Y
Sbjct: 22  DLYNRLYRERVLFLCQELDDELANQLIGIMLYLNAEEQNKGLYIYINSPGGSVTCGIAVY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M +IK  ++T C+G AASM S +L+ G++G R ALP++RI++HQP GG  GQAS++  
Sbjct: 82  DAMNYIKSDVTTICVGTAASMASFILAGGDRGKRIALPHSRIMIHQPEGGSQGQASEVLS 141

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            ++++++I+R++  IY +  G+    + + +DRD  +SA EA D+G+VD+V
Sbjct: 142 ESEEVMRIRRQVGRIYAERTGQPLSRISRDMDRDQFLSAREAKDYGLVDQV 192


>gi|226494171|ref|NP_001140458.1| hypothetical protein LOC100272517 [Zea mays]
 gi|194699596|gb|ACF83882.1| unknown [Zea mays]
 gi|195624444|gb|ACG34052.1| ATP-dependent Clp protease proteolytic subunit 1 [Zea mays]
          Length = 289

 Score =  174 bits (442), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 83/172 (48%), Positives = 117/172 (68%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+   LL+ERIVF+  +IED +A  + +QLL L+A +P  +I L++NSPGG ++A MAIY
Sbjct: 76  DVMGLLLRERIVFLGNEIEDFLADAVVSQLLLLDAIDPDSDIRLFVNSPGGSLSATMAIY 135

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D MQ ++  +ST  MG A S  S++L  G KG RFA+PN RI++HQP GG SGQA D+E 
Sbjct: 136 DVMQLVRADVSTIGMGIAGSTASIILGGGTKGKRFAMPNTRIMIHQPVGGASGQALDVEV 195

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            A++I+  KR +  I     G+T E+VEK +DRD  M   EA D+G++D V+
Sbjct: 196 QAKEILTNKRNVIRIVSGFTGRTPEQVEKDIDRDRYMGPLEAVDYGLIDGVI 247


>gi|72162593|ref|YP_290250.1| ClpP1 peptidase [Thermobifida fusca YX]
 gi|124013822|sp|Q47MU2|CLPP2_THEFY RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|71916325|gb|AAZ56227.1| ClpP1 peptidase. Serine peptidase. MEROPS family S14 [Thermobifida
           fusca YX]
          Length = 203

 Score =  174 bits (442), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 84/174 (48%), Positives = 120/174 (68%)

Query: 38  RLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97
           RLL++RIVF+  Q++D +A  I  +LL L AE+ +++I+LYINSPGG VTAGMAIYD MQ
Sbjct: 25  RLLRQRIVFLGQQVDDEIANRIVGELLLLSAEDRERDITLYINSPGGSVTAGMAIYDVMQ 84

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
           +I   + T  +G AASMG +LL AG +G R+ALP+ RI++HQPSGG  G ASDI   A  
Sbjct: 85  YIPNDVRTVGIGLAASMGQMLLCAGTRGKRYALPHTRIMMHQPSGGIGGTASDIRILADQ 144

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           ++ +K+   E    + G+  E++EK  DRD   +A EA ++G +D+VL +  D+
Sbjct: 145 LLYVKKMFLERISLHTGQPVEQIEKDADRDRWFTAQEALEYGFIDEVLTNTPDV 198


>gi|184200755|ref|YP_001854962.1| ATP-dependent Clp protease proteolytic subunit [Kocuria rhizophila
           DC2201]
 gi|183580985|dbj|BAG29456.1| ATP-dependent Clp protease proteolytic subunit [Kocuria rhizophila
           DC2201]
          Length = 220

 Score =  174 bits (442), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 90/193 (46%), Positives = 135/193 (69%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G R  + Y++L ++RI+F+  Q++D  A  I AQLL LE+++P ++I++
Sbjct: 17  VIPDFEERTPYGYRRQNPYTKLFEDRIIFLGVQVDDTSADDIMAQLLVLESQDPDRDITM 76

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+I+P I T C+GQAAS  S+LL+ G  G R ALPNAR+L+
Sbjct: 77  YINSPGGSFTAMTAIYDTMQYIRPEIQTVCLGQAASAASVLLAGGTPGKRLALPNARVLI 136

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+  G   GQASDIE  A +I++++  L E    +  K  E++ + ++RD I++A EA
Sbjct: 137 HQPAMEGQGGGQASDIEIQANEIMRMRTWLEETMALHTNKNVEDINRDIERDKILTAKEA 196

Query: 196 CDWGVVDKVLMSR 208
            ++G++D+VL SR
Sbjct: 197 QEYGIIDQVLDSR 209


>gi|152967459|ref|YP_001363243.1| endopeptidase Clp [Kineococcus radiotolerans SRS30216]
 gi|151361976|gb|ABS04979.1| Endopeptidase Clp [Kineococcus radiotolerans SRS30216]
          Length = 235

 Score =  174 bits (442), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 89/193 (46%), Positives = 137/193 (70%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T+ G +  D Y++L ++RIVF+  Q++D  A  I AQL+ LE+++ +++I +
Sbjct: 36  VLPQFEERTSYGMKRSDPYTKLFEDRIVFLGVQVDDASADDIIAQLIVLESQDTERDIIM 95

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+I+P I T+CMGQAAS  ++LL AG  G RFALPN+RIL+
Sbjct: 96  YINSPGGSFTALTAIYDTMQYIRPDIQTYCMGQAASAAAVLLGAGAPGKRFALPNSRILI 155

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  +GG  GQASD+E  A +I++++  L      +  +T ++V + ++RD  ++A EA
Sbjct: 156 HQPAMAGGDYGQASDLEIQANEILRMRSWLESTLAFHSHRTADQVREDIERDKFLTAREA 215

Query: 196 CDWGVVDKVLMSR 208
            ++G++D+VL SR
Sbjct: 216 VEYGLIDEVLTSR 228


>gi|227548722|ref|ZP_03978771.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227079189|gb|EEI17152.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 206

 Score =  174 bits (442), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 85/192 (44%), Positives = 136/192 (70%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +E+T+ G +  D Y +L +ERIVF+  Q++D  A  + AQLL LE+++P ++I++
Sbjct: 11  VLPQFLEETSFGTKQIDPYGKLFEERIVFLGTQVDDTSANDVMAQLLVLESQDPDRDITM 70

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA MAIYDTMQ+++P + T C+GQAAS  +++L+AG  G R ALPN+R+L+
Sbjct: 71  YINSPGGSFTALMAIYDTMQYVRPDVQTVCLGQAASAAAVILAAGAPGKRAALPNSRVLI 130

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP + G  GQ SD+E  A +I +++R +     ++ G++ E++ K  DRD I++A EA 
Sbjct: 131 HQPATQGTQGQVSDLEIQAAEIERMRRLMESTLAEHTGRSAEQIRKDTDRDKILTADEAV 190

Query: 197 DWGVVDKVLMSR 208
           ++G++D+V   R
Sbjct: 191 EYGIIDQVFDYR 202


>gi|18422548|ref|NP_568644.1| CLPP4 (CLP PROTEASE P4); serine-type endopeptidase [Arabidopsis
           thaliana]
 gi|297794727|ref|XP_002865248.1| hypothetical protein ARALYDRAFT_494440 [Arabidopsis lyrata subsp.
           lyrata]
 gi|75306344|sp|Q94B60|CLPP4_ARATH RecName: Full=ATP-dependent Clp protease proteolytic subunit 4,
           chloroplastic; AltName: Full=Endopeptidase ClpP4;
           Short=nClpP4; AltName: Full=nClpP3; Flags: Precursor
 gi|14596089|gb|AAK68772.1| ATP-dependent Clp protease-like protein [Arabidopsis thaliana]
 gi|30023792|gb|AAP13429.1| At5g45390 [Arabidopsis thaliana]
 gi|297311083|gb|EFH41507.1| hypothetical protein ARALYDRAFT_494440 [Arabidopsis lyrata subsp.
           lyrata]
 gi|332007860|gb|AED95243.1| ATP-dependent Clp protease proteolytic subunit 4 [Arabidopsis
           thaliana]
          Length = 292

 Score =  174 bits (442), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 84/182 (46%), Positives = 124/182 (68%), Gaps = 1/182 (0%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           E   RG  S D+   LL+ERIVF+   I+D +A  I +QLL L+A++P+K+I L+INSPG
Sbjct: 70  ESAIRGAES-DVMGLLLRERIVFLGSSIDDFVADAIMSQLLLLDAKDPKKDIKLFINSPG 128

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           G ++A MAIYD +Q ++  +ST  +G AAS  S++L AG KG RFA+PN RI++HQP GG
Sbjct: 129 GSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGAGTKGKRFAMPNTRIMIHQPLGG 188

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            SGQA D+E  A++++  K  +  I      +++E+V K +DRD  MS  EA ++G++D 
Sbjct: 189 ASGQAIDVEIQAKEVMHNKNNVTSIIAGCTSRSFEQVLKDIDRDRYMSPIEAVEYGLIDG 248

Query: 204 VL 205
           V+
Sbjct: 249 VI 250


>gi|226360501|ref|YP_002778279.1| ATP-dependent Clp protease proteolytic subunit [Rhodococcus opacus
           B4]
 gi|226238986|dbj|BAH49334.1| ATP-dependent Clp protease proteolytic subunit [Rhodococcus opacus
           B4]
          Length = 220

 Score =  174 bits (442), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 87/192 (45%), Positives = 135/192 (70%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +E ++ G +  + Y++L +ERI+F+  Q++D  A  + AQLL LE+ +P ++I++
Sbjct: 23  ILPSFIEHSSYGVKESNPYNKLFEERIIFLGVQVDDASANDVMAQLLVLESLDPDRDITM 82

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++  I+T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 83  YINSPGGSFTSLMAIYDTMQYVRADITTVCLGQAASAAAVLLAAGTPGKRLALPNARVLI 142

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP +GG  GQ SD+E  A +I +++R +     K+ GK  + + K  DRD I++A+EA 
Sbjct: 143 HQPATGGIQGQVSDLEIQAAEIERMRRLMETTLAKHTGKDADVIRKDTDRDKILTAAEAK 202

Query: 197 DWGVVDKVLMSR 208
           D+G++D VL  R
Sbjct: 203 DYGIIDDVLEYR 214


>gi|326509601|dbj|BAJ87016.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 296

 Score =  174 bits (441), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 83/177 (46%), Positives = 119/177 (67%)

Query: 29  GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTA 88
           G  S D+   LL+ERI+F+  +IED +A  + +QLL L+A + + +I L++NSPGG ++A
Sbjct: 78  GVASGDVMGLLLRERIIFLGNEIEDFLADAVVSQLLLLDAMDSESDIRLFVNSPGGSLSA 137

Query: 89  GMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQA 148
            MAIYD MQ ++  +ST  MG A S  S+LL  G KG RFA+PN RI++HQP GG SGQA
Sbjct: 138 TMAIYDVMQLVRADVSTIGMGIAGSTASILLGGGAKGKRFAMPNTRIMMHQPVGGASGQA 197

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            D+E  A++I+  KR +  +     G+T E+VEK +DRD  M   EA D+G++D V+
Sbjct: 198 LDVEVQAKEILASKRNVIRLISGFTGRTLEQVEKDIDRDRYMGPLEAVDYGIIDGVI 254


>gi|239917499|ref|YP_002957057.1| ATP-dependent Clp protease proteolytic subunit ClpP [Micrococcus
           luteus NCTC 2665]
 gi|281414011|ref|ZP_06245753.1| ATP-dependent Clp protease proteolytic subunit ClpP [Micrococcus
           luteus NCTC 2665]
 gi|239838706|gb|ACS30503.1| ATP-dependent Clp protease proteolytic subunit ClpP [Micrococcus
           luteus NCTC 2665]
          Length = 205

 Score =  174 bits (441), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 83/170 (48%), Positives = 116/170 (68%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y++LLK RIV++   + D  A  IC+QLL L AE+P+K+I LYINSPGG VTAGMAIYD
Sbjct: 21  LYTQLLKSRIVWLGEDVRDDNANAICSQLLLLSAEDPEKDIYLYINSPGGSVTAGMAIYD 80

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ+I   + T   G AASMG  LL++G KG R+A P+AR+L+HQPSGG  G  SDI   
Sbjct: 81  TMQYIPNDVVTVATGLAASMGQFLLASGTKGKRYATPHARVLMHQPSGGIGGTESDIRIQ 140

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           AQ I+ +K+ + E+  +  G++ E + +   RD   +A EA ++G +D +
Sbjct: 141 AQLILHMKQVMAELTAEQTGQSVETILEDNARDKWFTAQEALEYGFIDHI 190


>gi|289705668|ref|ZP_06502053.1| Clp protease [Micrococcus luteus SK58]
 gi|289557616|gb|EFD50922.1| Clp protease [Micrococcus luteus SK58]
          Length = 205

 Score =  174 bits (441), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 83/170 (48%), Positives = 116/170 (68%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y++LLK RIV++   + D  A  IC+QLL L AE+P+K+I LYINSPGG VTAGMAIYD
Sbjct: 21  LYTQLLKSRIVWLGEDVRDDNANAICSQLLLLSAEDPEKDIYLYINSPGGSVTAGMAIYD 80

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ+I   + T   G AASMG  LL++G KG R+A P+AR+L+HQPSGG  G  SDI   
Sbjct: 81  TMQYIPNDVVTVATGLAASMGQFLLASGAKGKRYATPHARVLMHQPSGGIGGTESDIRIQ 140

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           AQ I+ +K+ + E+  +  G++ E + +   RD   +A EA ++G +D +
Sbjct: 141 AQLILHMKQVMAELTAEQTGQSVETILEDNARDKWFTAQEALEYGFIDHI 190


>gi|295395010|ref|ZP_06805222.1| ATP-dependent Clp protease proteolytic subunit [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294972169|gb|EFG48032.1| ATP-dependent Clp protease proteolytic subunit [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 215

 Score =  174 bits (441), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 91/193 (47%), Positives = 137/193 (70%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++R++F+  Q++D  A  + AQLL LE+++P ++I+L
Sbjct: 19  VMPQFEERTPYGFKRQDPYTKLFEDRVIFLGVQVDDTSADDVMAQLLVLESQDPDRDITL 78

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+IKP I T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 79  YINSPGGSFTALTAIYDTMQYIKPEIQTVCLGQAASAAAVLLAAGAPGKRLALPNARVLI 138

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+  G   GQASD+E  A ++++++R L E   K+  K+ +EV   ++RD  ++A EA
Sbjct: 139 HQPAMQGQGQGQASDLEIQANEVLRMRRWLEETLAKHSNKSADEVSNDIERDLFLTAEEA 198

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD+VL SR
Sbjct: 199 KNYGLVDQVLSSR 211


>gi|282866710|ref|ZP_06275750.1| Endopeptidase Clp [Streptomyces sp. ACTE]
 gi|282558409|gb|EFB63971.1| Endopeptidase Clp [Streptomyces sp. ACTE]
          Length = 232

 Score =  174 bits (441), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 90/192 (46%), Positives = 137/192 (71%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP  VE+T++G R YD Y++L +ER++F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 33  VVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISI 92

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQF+KP I T CMGQAAS  ++LL+AG  G R ALP+AR+L+
Sbjct: 93  YINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPHARVLI 152

Query: 138 HQPSGGFSG-QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQPS      Q SD+E  A +I++++ +L E+  K+     E++ + ++RD I++A +A 
Sbjct: 153 HQPSSQTGREQLSDLEIAANEILRMRTQLEEMLAKHSTTPLEKISEDIERDKILTADDAL 212

Query: 197 DWGVVDKVLMSR 208
            +G+VD+++ +R
Sbjct: 213 AYGLVDQIVSTR 224


>gi|320010821|gb|ADW05671.1| Endopeptidase Clp [Streptomyces flavogriseus ATCC 33331]
          Length = 222

 Score =  174 bits (441), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 90/192 (46%), Positives = 137/192 (71%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP  VE+T++G R YD Y++L +ER++F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 23  VVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISI 82

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQF+KP I T CMGQAAS  ++LL+AG  G R ALP+AR+L+
Sbjct: 83  YINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPHARVLI 142

Query: 138 HQPSGGFSG-QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQPS      Q SD+E  A +I++++ +L E+  K+     E++ + ++RD I++A +A 
Sbjct: 143 HQPSSQTGREQLSDLEIAANEILRMRTQLEEMLAKHSTTPLEKISEDIERDKILTADDAL 202

Query: 197 DWGVVDKVLMSR 208
            +G+VD+++ +R
Sbjct: 203 AYGLVDQIVSTR 214


>gi|5360593|dbj|BAA82068.1| nClpP4 [Arabidopsis thaliana]
          Length = 299

 Score =  174 bits (441), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 84/182 (46%), Positives = 124/182 (68%), Gaps = 1/182 (0%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           E   RG  S D+   LL+ERIVF+   I+D +A  I +QLL L+A++P+K+I L+INSPG
Sbjct: 77  ESAIRGAES-DVMGLLLRERIVFLGSSIDDFVADAIMSQLLLLDAKDPKKDIKLFINSPG 135

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           G ++A MAIYD +Q ++  +ST  +G AAS  S++L AG KG RFA+PN RI++HQP GG
Sbjct: 136 GSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGAGTKGKRFAMPNTRIMIHQPLGG 195

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            SGQA D+E  A++++  K  +  I      +++E+V K +DRD  MS  EA ++G++D 
Sbjct: 196 ASGQAIDVEIQAKEVMHNKNNVTSIIAGCTSRSFEQVLKDIDRDRYMSPIEAVEYGLIDG 255

Query: 204 VL 205
           V+
Sbjct: 256 VI 257


>gi|118162102|gb|ABK64224.1| ClpP [Listeria monocytogenes]
          Length = 139

 Score =  174 bits (441), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 81/134 (60%), Positives = 106/134 (79%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IYSRLLK+RI+ +   I+D++A  I +QLLFL+A++P+K+I LYINSPGG ++AGMAIYD
Sbjct: 1   IYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDIFLYINSPGGSISAGMAIYD 60

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM F+K  + T  MG AASMGS LL+AG  G RFALPNA+I++HQP GG  GQA++IE  
Sbjct: 61  TMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAQIMIHQPLGGAQGQATEIEIA 120

Query: 155 AQDIVKIKRRLNEI 168
           A+ I+KIK R+N I
Sbjct: 121 ARHILKIKERMNTI 134


>gi|29827687|ref|NP_822321.1| ATP-dependent Clp protease proteolytic subunit 1 [Streptomyces
           avermitilis MA-4680]
 gi|67460536|sp|Q82NZ4|CLPP1_STRAW RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|29604787|dbj|BAC68856.1| putative ATP-dependent Clp protease proteolytic subunit 1
           [Streptomyces avermitilis MA-4680]
          Length = 217

 Score =  174 bits (441), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 84/177 (47%), Positives = 121/177 (68%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           + ++LL +RIV +  Q+++  A  +CAQLL L AE+ + +ISLYINSPGG VTAG+AIYD
Sbjct: 30  LAAQLLAQRIVLLGTQVDEVSANRVCAQLLLLSAEDSRTDISLYINSPGGSVTAGLAIYD 89

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM+ I   +ST  MG AASMG  LLS G  G RFALPNARI++HQPS G  G  +DIE  
Sbjct: 90  TMRLIPNDVSTLAMGFAASMGQFLLSVGAAGKRFALPNARIMMHQPSAGIGGTTADIEIQ 149

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           A+++   K+ +  I  ++ G++ E + +  DRD   +A +A ++G+VD+V+ S  D+
Sbjct: 150 AENLEFTKKAIERITAEHTGQSEETISRDGDRDRWFTAEQAKEYGMVDRVVESLDDV 206


>gi|227495367|ref|ZP_03925683.1| endopeptidase Clp [Actinomyces coleocanis DSM 15436]
 gi|226831121|gb|EEH63504.1| endopeptidase Clp [Actinomyces coleocanis DSM 15436]
          Length = 211

 Score =  174 bits (441), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 91/192 (47%), Positives = 136/192 (70%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V E+T+ G +  D YS+L ++RIVF+  Q++D  A  I AQLL LE+++P   I++
Sbjct: 18  VLPEVEERTSYGVKRLDPYSKLFQDRIVFLGVQVDDASADDIMAQLLVLESQDPDSMITM 77

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+IKP + T C+GQAAS  ++LL+ G  G R ALPNAR+++
Sbjct: 78  YINSPGGSFTAMTAIYDTMQYIKPQVQTVCLGQAASAAAVLLAGGAPGRRLALPNARVMI 137

Query: 138 HQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+  G  GQASDIE  A+++ +++  L E    + G+  E+V + +DRD I++A +A 
Sbjct: 138 HQPAMEGMRGQASDIEIVAEEMERMRTWLEETIAHHSGREIEQVRRDIDRDKILTAQQAL 197

Query: 197 DWGVVDKVLMSR 208
           ++G++D+VL SR
Sbjct: 198 EYGLIDQVLTSR 209


>gi|21225558|ref|NP_631337.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           coelicolor A3(2)]
 gi|256783422|ref|ZP_05521853.1| ATP-dependent Clp protease proteolytic subunit 1 [Streptomyces
           lividans TK24]
 gi|289767298|ref|ZP_06526676.1| Clp protease [Streptomyces lividans TK24]
 gi|18203600|sp|Q9X7R9|CLPP3_STRCO RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
           AltName: Full=Endopeptidase Clp 3
 gi|4835314|emb|CAB42936.1| putative ATP-dependent Clp protease proteolytic subunit 1
           [Streptomyces coelicolor A3(2)]
 gi|289697497|gb|EFD64926.1| Clp protease [Streptomyces lividans TK24]
          Length = 217

 Score =  174 bits (441), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 83/174 (47%), Positives = 118/174 (67%)

Query: 38  RLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97
           +LL +RIV +  Q+++  A  +CAQLL L A++P+ +ISLY+NSPGG V AG+AIYDTM+
Sbjct: 33  QLLDQRIVLLGTQVDEVSANRVCAQLLILSAQDPRTDISLYVNSPGGSVHAGLAIYDTMR 92

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
            I   +ST  MG AASMG  LLS G  G R+ALPNARI++HQPS G  G  +DIE  A +
Sbjct: 93  LIPNDVSTLAMGFAASMGQFLLSVGTAGKRYALPNARIMMHQPSAGIGGTTADIEIQADN 152

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           +   KR +  I  ++ G++ E + +  DRD   +A EA ++G+VD+V+ S  D+
Sbjct: 153 LDFTKRTIERITAEHTGQSPETISRDGDRDRWFTAEEAREYGMVDQVVQSLADV 206


>gi|291456562|ref|ZP_06595952.1| Clp protease [Bifidobacterium breve DSM 20213]
 gi|291381839|gb|EFE89357.1| Clp protease [Bifidobacterium breve DSM 20213]
          Length = 227

 Score =  174 bits (441), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 87/193 (45%), Positives = 139/193 (72%), Gaps = 3/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T  G ++ D YSRL ++RI+F+  Q++D  A  + AQLL LE+++P +++ +
Sbjct: 35  IMPQFVEKTPYGMKTQDAYSRLFEDRIIFLGVQVDDASADDVMAQLLVLESQDPNRDVMM 94

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL++G KG R  LPNAR+L+
Sbjct: 95  YINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLASGTKGKRLMLPNARVLI 154

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+   GF G+A++IE  A+++++++  L E   K+ G+  E++ + ++ D  ++A EA
Sbjct: 155 HQPAIDQGF-GKATEIEIQAKEMLRMREWLEETLAKHTGQDVEKIRRDIEVDTFLTADEA 213

Query: 196 CDWGVVDKVLMSR 208
            D+G+VD+VL  R
Sbjct: 214 KDYGIVDEVLAHR 226


>gi|289448104|ref|ZP_06437848.1| LOW QUALITY PROTEIN: ATP-dependent clp protease proteolytic subunit
           2 clpP2 [Mycobacterium tuberculosis CPHL_A]
 gi|289421062|gb|EFD18263.1| LOW QUALITY PROTEIN: ATP-dependent clp protease proteolytic subunit
           2 clpP2 [Mycobacterium tuberculosis CPHL_A]
          Length = 200

 Score =  174 bits (441), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 82/165 (49%), Positives = 113/165 (68%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL ERI+F+  ++ D +A  +CAQ+L L AE+  K+ISLYINSPGG ++AGMAIYD
Sbjct: 20  VYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYD 79

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM      I+T+ MG AASMG  LL+AG KG R+ALP+ARIL+HQP GG +G A+DI   
Sbjct: 80  TMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQ 139

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           A+    IK+ +  +  +  G+  E +E   DRD   +A+EA ++G
Sbjct: 140 AEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYG 184


>gi|256832188|ref|YP_003160915.1| Endopeptidase Clp [Jonesia denitrificans DSM 20603]
 gi|256685719|gb|ACV08612.1| Endopeptidase Clp [Jonesia denitrificans DSM 20603]
          Length = 235

 Score =  174 bits (441), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 92/193 (47%), Positives = 133/193 (68%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++RI+F+  Q++D  A  + AQLL LE++ P ++I L
Sbjct: 33  VLPQFEERTAYGFKRQDPYTKLFEDRIIFLGVQVDDASADDVMAQLLVLESQEPNRDIIL 92

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+I   + T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 93  YINSPGGSFTAMTAIYDTMQYITSEVQTVCLGQAASSAAVLLAAGSPGKRLALPNARVLI 152

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG   QASDIE HA +I++++  L +    + GK  +E+   ++RD I+SA EA
Sbjct: 153 HQPSLSGGGYAQASDIEIHANEILRMREWLEDTLAVHTGKPIDEIRTDIERDKILSAQEA 212

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD+VL SR
Sbjct: 213 VEYGLVDQVLESR 225


>gi|302753844|ref|XP_002960346.1| hypothetical protein SELMODRAFT_71251 [Selaginella moellendorffii]
 gi|302767898|ref|XP_002967369.1| hypothetical protein SELMODRAFT_71370 [Selaginella moellendorffii]
 gi|300165360|gb|EFJ31968.1| hypothetical protein SELMODRAFT_71370 [Selaginella moellendorffii]
 gi|300171285|gb|EFJ37885.1| hypothetical protein SELMODRAFT_71251 [Selaginella moellendorffii]
          Length = 214

 Score =  174 bits (440), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 80/167 (47%), Positives = 120/167 (71%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           LL++RIVF+  Q++D  A LI +QLL L+A++P K+I ++INSPGG V+AGM IYD M+ 
Sbjct: 7   LLQQRIVFLGSQVDDVSADLIISQLLLLDAKDPTKDIKMFINSPGGSVSAGMGIYDAMKL 66

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
            +  +ST C G AASMG+ LL++G KG R+ +PNAR+++HQP GG  G A D+    +++
Sbjct: 67  CRADVSTICFGLAASMGAFLLASGTKGKRYCMPNARVMIHQPLGGAGGVAIDVGIQVREM 126

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           +  K +LN+I  +  GK+ E++E   DRD+ M+A EA D+G+VD V+
Sbjct: 127 MYHKAKLNKILSRLTGKSEEQIEADTDRDYFMNAWEAVDYGLVDGVI 173


>gi|256391235|ref|YP_003112799.1| endopeptidase Clp [Catenulispora acidiphila DSM 44928]
 gi|256357461|gb|ACU70958.1| Endopeptidase Clp [Catenulispora acidiphila DSM 44928]
          Length = 201

 Score =  174 bits (440), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 83/190 (43%), Positives = 125/190 (65%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V  Q   GER  DIYS LL ERI+++   I+  +A  + AQLL LE++ P +EISLY
Sbjct: 11  IPYVTTQRPGGERVTDIYSHLLTERIIYLGTAIDAGVANALIAQLLHLESDGPDREISLY 70

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           +N  GG +T+ +AIYDTMQ IK PI T C+GQA ++G++LL+AG  G+R  LP+AR++LH
Sbjct: 71  VNCEGGDLTSMLAIYDTMQHIKAPIRTTCVGQAIAVGAVLLAAGTPGLRSVLPHARVVLH 130

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP+    G   D+   A ++V+++  L  I  ++ G+T E +    DRD + +A+ A ++
Sbjct: 131 QPAARGQGAIPDLIIQADELVRMRSELEAILTQHTGQTAERLRHDTDRDRVFTAAAAVEY 190

Query: 199 GVVDKVLMSR 208
           G+ D+VL  R
Sbjct: 191 GLADQVLGPR 200


>gi|213966164|ref|ZP_03394350.1| Clp protease [Corynebacterium amycolatum SK46]
 gi|213951179|gb|EEB62575.1| Clp protease [Corynebacterium amycolatum SK46]
          Length = 209

 Score =  174 bits (440), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 86/192 (44%), Positives = 135/192 (70%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE ++ G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE  +P ++I++
Sbjct: 14  VLPSFVEHSSFGAKESNPYNKLFEERIIFLGSQVDDTAANDIMAQLLVLEGLDPDRDITM 73

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++P + T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 74  YINSPGGSFTSLMAIYDTMQYVRPDVQTVCLGQAASAAAVLLAAGAPGKRAALPNARVLI 133

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP + G  GQ SD+E  A +I ++++ + E   ++ G+T E++ K  DRD I++A EA 
Sbjct: 134 HQPATQGIQGQVSDLEIQANEIERMRKLMEETLARHSGRTAEQIRKDTDRDKILTAEEAV 193

Query: 197 DWGVVDKVLMSR 208
           ++G++D+V   R
Sbjct: 194 EYGIIDQVFEYR 205


>gi|254392447|ref|ZP_05007628.1| ATP-dependent Clp protease proteolytic subunit 2 [Streptomyces
           clavuligerus ATCC 27064]
 gi|294812617|ref|ZP_06771260.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           clavuligerus ATCC 27064]
 gi|326440935|ref|ZP_08215669.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           clavuligerus ATCC 27064]
 gi|197706115|gb|EDY51927.1| ATP-dependent Clp protease proteolytic subunit 2 [Streptomyces
           clavuligerus ATCC 27064]
 gi|294325216|gb|EFG06859.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           clavuligerus ATCC 27064]
          Length = 219

 Score =  174 bits (440), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 90/192 (46%), Positives = 137/192 (71%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP  VE+T++G R YD Y++L +ER++F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 20  VVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISI 79

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQF+KP I T CMGQAAS  ++LL+AG  G R ALP+AR+L+
Sbjct: 80  YINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPHARVLI 139

Query: 138 HQPSGGFSG-QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQPS      Q SD+E  A++I++++ +L E+  K+     E+V   ++RD I++A +A 
Sbjct: 140 HQPSSQTGREQLSDLEIAAKEILRMRVQLEEMLAKHSTTPIEKVRDDIERDKILTAEDAL 199

Query: 197 DWGVVDKVLMSR 208
            +G++D+++ +R
Sbjct: 200 AYGLIDQIVSTR 211


>gi|111018526|ref|YP_701498.1| endopeptidase Clp subunit [Rhodococcus jostii RHA1]
 gi|116243125|sp|Q0SGJ6|CLPP4_RHOSR RecName: Full=ATP-dependent Clp protease proteolytic subunit 4;
           AltName: Full=Endopeptidase Clp 4
 gi|110818056|gb|ABG93340.1| endopeptidase Clp subunit [Rhodococcus jostii RHA1]
          Length = 194

 Score =  174 bits (440), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 92/187 (49%), Positives = 135/187 (72%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+E+T  GERS+DI+SRLL ERIVF+  +I+D +A ++ AQLL L+A++  +EI LY
Sbjct: 6   IPHVIERTPAGERSFDIFSRLLNERIVFLGTEIDDGVANVVMAQLLHLQADSSDQEIGLY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TA +AIYDTMQF++P I+T+CMGQAAS  ++LL+AG KG R  L ++R LLH
Sbjct: 66  INSPGGSTTAMLAIYDTMQFLRPTIATYCMGQAASAAAVLLAAGTKGHRHVLAHSRTLLH 125

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPS   +G  SD+   A +I++++ +   I  K+ G+T E + +  DRD I +A EA ++
Sbjct: 126 QPSTQGNGTISDLALQAAEIMRVRSQTEAILSKHTGQTVERLRRDTDRDRIFTAEEAIEY 185

Query: 199 GVVDKVL 205
           G+ D ++
Sbjct: 186 GLADTLV 192


>gi|323149170|ref|YP_004221999.1| ATP-dependent Clp protease proteolytic subunit [Coccomyxa sp.
           C-169]
 gi|317467226|gb|ADV29847.1| ATP-dependent Clp protease proteolytic subunit [Coccomyxa sp.
           C-169]
          Length = 195

 Score =  174 bits (440), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 72/171 (42%), Positives = 123/171 (71%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  +++D +A  +   +L+L AE   K + +YINSPGG VT G+A+Y
Sbjct: 22  DLYNRLYRERVLFLCQELDDELANQLIGIMLYLNAEEKSKGLYIYINSPGGSVTCGIAVY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D+M ++K  ++T C+G AASM S +L+ G++G R ALP++RI++HQP GG  GQAS++  
Sbjct: 82  DSMNYVKADVTTICVGTAASMASFVLAGGDRGKRIALPHSRIMIHQPEGGSQGQASEVLS 141

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            + ++++I+R++ +IY +  G+    + + +DRD  MSA EA ++G+VD+V
Sbjct: 142 ESSEVMRIRRQVGKIYAERTGQPLSRISRDMDRDQFMSAREAKEYGLVDQV 192


>gi|269795730|ref|YP_003315185.1| ATP-dependent Clp protease proteolytic subunit ClpP [Sanguibacter
           keddieii DSM 10542]
 gi|269097915|gb|ACZ22351.1| ATP-dependent Clp protease proteolytic subunit ClpP [Sanguibacter
           keddieii DSM 10542]
          Length = 232

 Score =  174 bits (440), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 91/193 (47%), Positives = 131/193 (67%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           + P   E+T  G +  D YS+L ++RI+F+  Q++D  A  + AQLL LE++ P ++I L
Sbjct: 32  IFPQFEERTAYGIKRQDPYSKLFEDRIIFLGVQVDDASADDVMAQLLVLESQEPNRDIIL 91

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+I   + T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 92  YINSPGGSFTAMTAIYDTMQYITSQVQTVCLGQAASAAAVLLAAGTPGKRLALPNARVLI 151

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+  GG   QASDIE HA ++++++  L      + G+  E+V K ++RD I+SA +A
Sbjct: 152 HQPAMEGGNYAQASDIEIHANELIRMREWLESTLALHSGRDVEQVRKDIERDKILSAQQA 211

Query: 196 CDWGVVDKVLMSR 208
            D+G+VD +L SR
Sbjct: 212 VDYGLVDSILESR 224


>gi|256375294|ref|YP_003098954.1| endopeptidase Clp [Actinosynnema mirum DSM 43827]
 gi|255919597|gb|ACU35108.1| Endopeptidase Clp [Actinosynnema mirum DSM 43827]
          Length = 209

 Score =  174 bits (440), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 87/192 (45%), Positives = 135/192 (70%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T+ G +  + Y++L +ERI+F+  Q++D  A  + AQLL LE+E+P ++I +
Sbjct: 12  VLPSFVERTSYGVKESNPYNKLFEERIIFLGVQVDDASANDVMAQLLVLESEDPDRDILM 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQF++P I T+C+GQA+S  ++LL+AG  G R ALPNAR+L+
Sbjct: 72  YINSPGGSFTSLMAIYDTMQFVRPDIQTYCLGQASSAAAVLLAAGTPGKRHALPNARVLI 131

Query: 138 HQPSG-GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+  G  GQ SD+E  + +I +++R L      +  ++ E+V   ++RD I++A EA 
Sbjct: 132 HQPATEGVYGQVSDLEIQSNEIQRVRRLLESTLAHHTNRSPEQVRADIERDKILTAEEAK 191

Query: 197 DWGVVDKVLMSR 208
           ++G+VD VL  R
Sbjct: 192 EYGIVDTVLPYR 203


>gi|30171711|gb|AAP20389.1| ClpP [Listeria monocytogenes]
 gi|30171713|gb|AAP20390.1| ClpP [Listeria monocytogenes]
 gi|30171715|gb|AAP20391.1| ClpP [Listeria monocytogenes]
 gi|30171717|gb|AAP20392.1| ClpP [Listeria monocytogenes]
 gi|30171719|gb|AAP20393.1| ClpP [Listeria monocytogenes]
 gi|30171721|gb|AAP20394.1| ClpP [Listeria monocytogenes]
 gi|30171725|gb|AAP20396.1| ClpP [Listeria monocytogenes]
 gi|30171727|gb|AAP20397.1| ClpP [Listeria monocytogenes]
 gi|30171729|gb|AAP20398.1| ClpP [Listeria monocytogenes]
 gi|30171731|gb|AAP20399.1| ClpP [Listeria monocytogenes]
 gi|30171733|gb|AAP20400.1| ClpP [Listeria monocytogenes]
 gi|30171737|gb|AAP20402.1| ClpP [Listeria monocytogenes]
 gi|30171745|gb|AAP20406.1| ClpP [Listeria monocytogenes]
 gi|30171747|gb|AAP20407.1| ClpP [Listeria monocytogenes]
 gi|30171749|gb|AAP20408.1| ClpP [Listeria monocytogenes]
 gi|30171753|gb|AAP20410.1| ClpP [Listeria monocytogenes]
 gi|30171755|gb|AAP20411.1| ClpP [Listeria monocytogenes]
 gi|30171759|gb|AAP20413.1| ClpP [Listeria monocytogenes]
 gi|71480602|gb|AAZ32226.1| ClpP [Listeria monocytogenes]
 gi|118162050|gb|ABK64198.1| ClpP [Listeria monocytogenes]
 gi|118162052|gb|ABK64199.1| ClpP [Listeria monocytogenes]
 gi|118162054|gb|ABK64200.1| ClpP [Listeria monocytogenes]
 gi|118162056|gb|ABK64201.1| ClpP [Listeria monocytogenes]
 gi|118162058|gb|ABK64202.1| ClpP [Listeria monocytogenes]
 gi|118162060|gb|ABK64203.1| ClpP [Listeria monocytogenes]
 gi|118162062|gb|ABK64204.1| ClpP [Listeria monocytogenes]
 gi|118162064|gb|ABK64205.1| ClpP [Listeria monocytogenes]
 gi|118162066|gb|ABK64206.1| ClpP [Listeria monocytogenes]
 gi|118162068|gb|ABK64207.1| ClpP [Listeria monocytogenes]
 gi|118162070|gb|ABK64208.1| ClpP [Listeria monocytogenes]
 gi|118162072|gb|ABK64209.1| ClpP [Listeria monocytogenes]
 gi|118162074|gb|ABK64210.1| ClpP [Listeria monocytogenes]
 gi|118162076|gb|ABK64211.1| ClpP [Listeria monocytogenes]
 gi|118162078|gb|ABK64212.1| ClpP [Listeria monocytogenes]
 gi|118162080|gb|ABK64213.1| ClpP [Listeria monocytogenes]
 gi|118162082|gb|ABK64214.1| ClpP [Listeria monocytogenes]
 gi|118162084|gb|ABK64215.1| ClpP [Listeria monocytogenes]
 gi|118162086|gb|ABK64216.1| ClpP [Listeria monocytogenes]
 gi|118162088|gb|ABK64217.1| ClpP [Listeria monocytogenes]
 gi|118162090|gb|ABK64218.1| ClpP [Listeria monocytogenes]
 gi|118162092|gb|ABK64219.1| ClpP [Listeria monocytogenes]
 gi|118162094|gb|ABK64220.1| ClpP [Listeria monocytogenes]
 gi|118162096|gb|ABK64221.1| ClpP [Listeria monocytogenes]
 gi|118162098|gb|ABK64222.1| ClpP [Listeria monocytogenes]
 gi|118162100|gb|ABK64223.1| ClpP [Listeria monocytogenes]
 gi|118162106|gb|ABK64226.1| ClpP [Listeria monocytogenes]
 gi|118162112|gb|ABK64229.1| ClpP [Listeria monocytogenes]
 gi|118162114|gb|ABK64230.1| ClpP [Listeria monocytogenes]
 gi|118162116|gb|ABK64231.1| ClpP [Listeria monocytogenes]
 gi|150372482|dbj|BAF66030.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372484|dbj|BAF66031.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372486|dbj|BAF66032.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372488|dbj|BAF66033.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372490|dbj|BAF66034.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372492|dbj|BAF66035.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372494|dbj|BAF66036.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372496|dbj|BAF66037.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372498|dbj|BAF66038.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372500|dbj|BAF66039.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372502|dbj|BAF66040.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372504|dbj|BAF66041.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372506|dbj|BAF66042.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372508|dbj|BAF66043.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372510|dbj|BAF66044.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372512|dbj|BAF66045.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372514|dbj|BAF66046.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372516|dbj|BAF66047.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372518|dbj|BAF66048.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372520|dbj|BAF66049.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372522|dbj|BAF66050.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372524|dbj|BAF66051.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372526|dbj|BAF66052.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372528|dbj|BAF66053.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372530|dbj|BAF66054.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372532|dbj|BAF66055.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372534|dbj|BAF66056.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372538|dbj|BAF66058.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372540|dbj|BAF66059.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372542|dbj|BAF66060.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372544|dbj|BAF66061.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372546|dbj|BAF66062.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372548|dbj|BAF66063.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372550|dbj|BAF66064.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372552|dbj|BAF66065.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372554|dbj|BAF66066.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372556|dbj|BAF66067.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372558|dbj|BAF66068.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372560|dbj|BAF66069.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372562|dbj|BAF66070.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372564|dbj|BAF66071.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372566|dbj|BAF66072.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372568|dbj|BAF66073.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372570|dbj|BAF66074.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372572|dbj|BAF66075.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372574|dbj|BAF66076.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372576|dbj|BAF66077.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372578|dbj|BAF66078.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372580|dbj|BAF66079.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372582|dbj|BAF66080.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372584|dbj|BAF66081.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372586|dbj|BAF66082.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372588|dbj|BAF66083.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372590|dbj|BAF66084.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372592|dbj|BAF66085.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372594|dbj|BAF66086.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372596|dbj|BAF66087.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372598|dbj|BAF66088.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|189484999|gb|AAP20409.2| ClpP [Listeria monocytogenes]
          Length = 139

 Score =  174 bits (440), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 81/134 (60%), Positives = 105/134 (78%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IYSRLLK+RI+ +   I+D++A  I +QLLFL+A++P+K+I LYINSPGG ++AGMAIYD
Sbjct: 1   IYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDIFLYINSPGGSISAGMAIYD 60

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM F+K  + T  MG AASMGS LL+AG  G RFALPNA I++HQP GG  GQA++IE  
Sbjct: 61  TMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEIMIHQPLGGAQGQATEIEIA 120

Query: 155 AQDIVKIKRRLNEI 168
           A+ I+KIK R+N I
Sbjct: 121 ARHILKIKERMNTI 134


>gi|323449038|gb|EGB04929.1| hypothetical protein AURANDRAFT_38757 [Aureococcus anophagefferens]
          Length = 273

 Score =  174 bits (440), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 86/191 (45%), Positives = 135/191 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           + P+ +   + G+   D+ SRLL++RI+ +   ++D +A ++ AQLL+L  ++P K+I+L
Sbjct: 69  IPPVRMPMVDTGDGQMDVISRLLRDRILLLGRGVDDEVANVLVAQLLYLANDDPTKDITL 128

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AGMAIYDTMQF+   +ST C G AASMG+ LL AG KG R +LPN+RI++
Sbjct: 129 YINSPGGSVSAGMAIYDTMQFVPCDVSTVCFGTAASMGAFLLGAGAKGKRRSLPNSRIMI 188

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+ ++++LN    +  G+  +++E+  DRD  M   EA  
Sbjct: 189 HQPLGGAQGQAADIEIQAKEILFVRQQLNTFISEYTGQPMDKIEEDCDRDFFMCPEEALS 248

Query: 198 WGVVDKVLMSR 208
           +G++D+V+ ++
Sbjct: 249 YGLIDEVVKTK 259


>gi|168701666|ref|ZP_02733943.1| ATP-dependent Clp protease proteolytic subunit [Gemmata
           obscuriglobus UQM 2246]
          Length = 208

 Score =  174 bits (440), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 82/166 (49%), Positives = 119/166 (71%)

Query: 41  KERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           ++RI+F+   I + +ATL+  QLL+LE E   ++ISLYINSPGG V+A +AIYDTMQF++
Sbjct: 37  EQRIIFLNWPINNDVATLVIKQLLYLEYEKKSEDISLYINSPGGSVSATLAIYDTMQFMQ 96

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
            PI+TFCMG AAS  ++LL+AG    R+A+PN+++++HQP G   GQ SDIE  A +I++
Sbjct: 97  SPINTFCMGLAASGAAVLLAAGSPKKRYAMPNSKVMIHQPYGQVGGQVSDIEIQANEILR 156

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
            + RLNEI  K+ G+  E + +  DRD    A EA  +G+VD+VL+
Sbjct: 157 ERGRLNEILAKHTGQPVEIIARETDRDKYYHADEAKAFGLVDEVLV 202


>gi|150372536|dbj|BAF66057.1| Clp protease proteolytic subunit [Listeria monocytogenes]
          Length = 139

 Score =  173 bits (439), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 81/134 (60%), Positives = 105/134 (78%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IYSRLLK+RI+ +   I+D++A  I +QLLFL+A++P+K+I LYINSPGG ++AGMAIYD
Sbjct: 1   IYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDIFLYINSPGGSISAGMAIYD 60

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM F+K  + T  MG AASMGS LL+AG  G RFALPNA I++HQP GG  GQA++IE  
Sbjct: 61  TMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEIMIHQPLGGAQGQATEIEIA 120

Query: 155 AQDIVKIKRRLNEI 168
           A+ I+KIK R+N I
Sbjct: 121 ARHILKIKERMNTI 134


>gi|30171739|gb|AAP20403.1| ClpP [Listeria monocytogenes]
 gi|30171741|gb|AAP20404.1| ClpP [Listeria monocytogenes]
 gi|30171743|gb|AAP20405.1| ClpP [Listeria monocytogenes]
 gi|30171761|gb|AAP20414.1| ClpP [Listeria monocytogenes]
 gi|30171763|gb|AAP20415.1| ClpP [Listeria monocytogenes]
 gi|30171765|gb|AAP20416.1| ClpP [Listeria monocytogenes]
 gi|118162104|gb|ABK64225.1| ClpP [Listeria monocytogenes]
 gi|118162108|gb|ABK64227.1| ClpP [Listeria monocytogenes]
 gi|118162110|gb|ABK64228.1| ClpP [Listeria monocytogenes]
          Length = 139

 Score =  173 bits (439), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 81/134 (60%), Positives = 105/134 (78%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IYSRLLK+RI+ +   I+D++A  I +QLLFL+A++P+K+I LYINSPGG ++AGMAIYD
Sbjct: 1   IYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDIFLYINSPGGSISAGMAIYD 60

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM F+K  + T  MG AASMGS LL+AG  G RFALPNA I++HQP GG  GQA++IE  
Sbjct: 61  TMNFVKADVQTIGMGMAASMGSFLLTAGASGKRFALPNAEIMIHQPLGGAQGQATEIEIA 120

Query: 155 AQDIVKIKRRLNEI 168
           A+ I+KIK R+N I
Sbjct: 121 ARHILKIKERMNTI 134


>gi|302556966|ref|ZP_07309308.1| Clp protease [Streptomyces griseoflavus Tu4000]
 gi|302474584|gb|EFL37677.1| Clp protease [Streptomyces griseoflavus Tu4000]
          Length = 218

 Score =  173 bits (439), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 83/181 (45%), Positives = 121/181 (66%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           + ++LL +RIV +  Q+++  A  +CAQLL L AE+P+ +ISLYINSPGG V AG+AIYD
Sbjct: 30  LAAQLLAQRIVLLGTQVDEVSANRVCAQLLILSAEDPRTDISLYINSPGGSVHAGLAIYD 89

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM+ I   ++T  MG AASMG  LL  G  G R+ALPNAR+++HQPSGG  G  +DIE  
Sbjct: 90  TMRLIPNDVATLAMGFAASMGQFLLCVGAPGKRYALPNARVMMHQPSGGIGGTTADIEIQ 149

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           A+ +   KR +  I  ++ G+T E + +  DRD   +A +A ++G+VD+V+ S  D+   
Sbjct: 150 AESLDFTKRTIERITAEHTGQTPETISRDGDRDRWFTAEQAREYGMVDRVVESLDDVRPA 209

Query: 215 S 215
           +
Sbjct: 210 A 210


>gi|239941127|ref|ZP_04693064.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           roseosporus NRRL 15998]
 gi|239987605|ref|ZP_04708269.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           roseosporus NRRL 11379]
 gi|291444568|ref|ZP_06583958.1| ATP-dependent Clp protease proteolytic subunit 2 [Streptomyces
           roseosporus NRRL 15998]
 gi|291347515|gb|EFE74419.1| ATP-dependent Clp protease proteolytic subunit 2 [Streptomyces
           roseosporus NRRL 15998]
          Length = 227

 Score =  173 bits (439), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 89/192 (46%), Positives = 137/192 (71%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP  VE+T++G R YD Y++L +ER++F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 28  VVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISI 87

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQF+KP I T CMGQAAS  ++LL+AG  G R ALP+AR+L+
Sbjct: 88  YINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPHARVLI 147

Query: 138 HQPSGGFSG-QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQPS      Q SD+E  A +I++++ +L E+  ++     E++ + ++RD I++A +A 
Sbjct: 148 HQPSSQTGREQLSDLEIAANEILRMRTQLEEMLARHSTTPLEKISEDIERDKILTAEDAL 207

Query: 197 DWGVVDKVLMSR 208
            +G+VD+++ +R
Sbjct: 208 AYGLVDQIVSTR 219


>gi|224178037|ref|YP_002600892.1| proteolytic subunit 2 of clp protease [Pyramimonas parkeae]
 gi|215882704|gb|ACJ71077.1| proteolytic subunit 2 of clp protease [Pyramimonas parkeae]
          Length = 198

 Score =  173 bits (438), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 73/171 (42%), Positives = 120/171 (70%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+   ++D +A  +   +L+L AE+  K + +YINSPGG VT G+A+Y
Sbjct: 22  DLYNRLYRERVLFLGSDLDDELANQLVGIMLYLSAEDESKRLYIYINSPGGSVTCGIAVY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D MQ +   ++T C+G AASM S +L+ GE+G R AL +ARI++HQP GG  GQAS++  
Sbjct: 82  DAMQHVNASVTTICVGIAASMASFVLAGGERGHRLALSHARIMIHQPQGGSQGQASEVTA 141

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            A+++++I+R++ +IY +  G+    + + +DRD  MS  EA ++G+VD+V
Sbjct: 142 EAEEVMRIRRQVGQIYAERTGQRLTTIARDMDRDRFMSGREAKEYGLVDQV 192


>gi|293189653|ref|ZP_06608370.1| Clp protease [Actinomyces odontolyticus F0309]
 gi|315604695|ref|ZP_07879758.1| ATP-dependent Clp protease proteolytic subunit [Actinomyces sp.
           oral taxon 180 str. F0310]
 gi|292821391|gb|EFF80333.1| Clp protease [Actinomyces odontolyticus F0309]
 gi|315313707|gb|EFU61761.1| ATP-dependent Clp protease proteolytic subunit [Actinomyces sp.
           oral taxon 180 str. F0310]
          Length = 214

 Score =  172 bits (437), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 94/207 (45%), Positives = 142/207 (68%), Gaps = 3/207 (1%)

Query: 3   FEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQ 62
           FE  A++  +  ++  +P   E+T  G R  + Y++L ++RIVF+  Q++D  A  + AQ
Sbjct: 7   FEAVARQMPQARYV--LPDFEERTAYGFRRQNPYTKLFEDRIVFLGVQVDDASADDVMAQ 64

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           LL LE+++P   I++YINSPGG  TA  AIYDTMQ+IKP I T C+GQAAS  ++LL+AG
Sbjct: 65  LLVLESQDPDSLITMYINSPGGSFTALTAIYDTMQYIKPQIQTVCLGQAASAAAVLLAAG 124

Query: 123 EKGMRFALPNARILLHQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVE 181
             G R ALPNAR+L+HQP+  G  GQASDI+  A +I +++  L +   K+ GK  E+V 
Sbjct: 125 SPGKRLALPNARVLIHQPAMEGMQGQASDIQIVADEIDRMRAWLEDTISKHSGKPVEQVR 184

Query: 182 KTLDRDHIMSASEACDWGVVDKVLMSR 208
           + ++RD I++A +A ++G++D+VL SR
Sbjct: 185 RDIERDKILTAPQAAEYGLIDQVLESR 211


>gi|21593305|gb|AAM65254.1| ATP-dependent Clp protease proteolytic subunit (ClpP4) [Arabidopsis
           thaliana]
          Length = 292

 Score =  172 bits (437), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 83/182 (45%), Positives = 123/182 (67%), Gaps = 1/182 (0%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           E   RG  S D+   LL+ERIVF+   I+D +A  I +QLL L+A++P+K+I L+INSPG
Sbjct: 70  ESAIRGAES-DVMGLLLRERIVFLGSSIDDFVADAIMSQLLLLDAKDPKKDIKLFINSPG 128

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           G ++A MAIYD +Q ++  +ST  +G AAS  S++L AG KG RFA+PN RI++HQP GG
Sbjct: 129 GSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGAGTKGKRFAMPNTRIMIHQPLGG 188

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            SGQ  D+E  A++++  K  +  I      +++E+V K +DRD  MS  EA ++G++D 
Sbjct: 189 ASGQVIDVEIQAKEVMHNKNNVTSIIAGCTSRSFEQVLKDIDRDRYMSPIEAVEYGLIDG 248

Query: 204 VL 205
           V+
Sbjct: 249 VI 250


>gi|325285511|ref|YP_004261301.1| ATP-dependent Clp protease proteolytic subunit [Cellulophaga lytica
           DSM 7489]
 gi|324320965|gb|ADY28430.1| ATP-dependent Clp protease proteolytic subunit [Cellulophaga lytica
           DSM 7489]
          Length = 182

 Score =  172 bits (437), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 84/180 (46%), Positives = 123/180 (68%), Gaps = 1/180 (0%)

Query: 26  TNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV 85
           + +G+    I  +LL ER VF+ G + D  A  +  +LL+L+ +   +EI L INSPGG 
Sbjct: 3   SKKGKVQEAIDEKLLNERKVFLWGMVNDDSAKHVIDRLLYLDLQG-NEEIQLVINSPGGY 61

Query: 86  VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS 145
           VT+G AIYDT++ +K P+ST C G AASMGS+LLS G KG RF  P+A++++HQPSGG  
Sbjct: 62  VTSGFAIYDTIKSLKSPVSTVCTGLAASMGSILLSVGAKGRRFIQPHAQVMIHQPSGGAG 121

Query: 146 GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           GQAS+IE  A++I+K +    +I   NCG+ +++V K  DRD+ M+A E+  +G+VD +L
Sbjct: 122 GQASNIEIQAKEIIKTRELSAKILADNCGQDFDKVMKDFDRDYWMNAEESVAYGIVDGIL 181


>gi|154509333|ref|ZP_02044975.1| hypothetical protein ACTODO_01858 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798967|gb|EDN81387.1| hypothetical protein ACTODO_01858 [Actinomyces odontolyticus ATCC
           17982]
          Length = 214

 Score =  172 bits (437), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 94/207 (45%), Positives = 142/207 (68%), Gaps = 3/207 (1%)

Query: 3   FEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQ 62
           FE  A++  +  ++  +P   E+T  G R  + Y++L ++RIVF+  Q++D  A  + AQ
Sbjct: 7   FEAVARQMPQARYV--LPDFEERTAYGFRRQNPYTKLFEDRIVFLGVQVDDASADDVMAQ 64

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           LL LE+++P   I++YINSPGG  TA  AIYDTMQ+IKP I T C+GQAAS  ++LL+AG
Sbjct: 65  LLVLESQDPDSLITMYINSPGGSFTALTAIYDTMQYIKPQIQTVCLGQAASAAAVLLAAG 124

Query: 123 EKGMRFALPNARILLHQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVE 181
             G R ALPNAR+L+HQP+  G  GQASDI+  A +I +++  L +   K+ GK  E+V 
Sbjct: 125 SPGKRLALPNARVLIHQPAMEGMQGQASDIQIVADEIDRMRAWLEDTISKHSGKPVEQVR 184

Query: 182 KTLDRDHIMSASEACDWGVVDKVLMSR 208
           + ++RD I++A +A ++G++D+VL SR
Sbjct: 185 RDIERDKILTAPQAAEYGLIDQVLESR 211


>gi|254704397|ref|ZP_05166225.1| ATP-dependent Clp protease proteolytic subunit [Brucella suis bv. 3
           str. 686]
          Length = 114

 Score =  172 bits (437), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 77/114 (67%), Positives = 98/114 (85%)

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIK 162
           +ST CMGQAASMGSLLL+AG  G R+ALPNARI++HQPSGGF GQASDIERHAQDI+K+K
Sbjct: 1   VSTLCMGQAASMGSLLLTAGATGHRYALPNARIMVHQPSGGFQGQASDIERHAQDIIKMK 60

Query: 163 RRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           RRLNEIYVK+ G+ Y+ +E+TLDRDH M+A EA ++G++DKV+ +R    ++SK
Sbjct: 61  RRLNEIYVKHTGRDYDTIERTLDRDHFMTAQEALEFGLIDKVVEARDVSADESK 114


>gi|307701831|ref|ZP_07638845.1| endopeptidase Clp [Mobiluncus mulieris FB024-16]
 gi|307613089|gb|EFN92344.1| endopeptidase Clp [Mobiluncus mulieris FB024-16]
          Length = 230

 Score =  172 bits (436), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 88/192 (45%), Positives = 136/192 (70%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++RIVF+  Q++D+ A  + AQLL LE+++P   I++
Sbjct: 34  ILPTFEERTAYGYKRQDSYAKLFEDRIVFLGEQVDDNSADDVMAQLLVLESQDPDSLITM 93

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+IKP I T C+GQAAS  ++LL+ G  G R ALPNAR+L+
Sbjct: 94  YINSPGGSFTAMTAIYDTMQYIKPEIQTVCLGQAASAAAVLLAGGSPGKRLALPNARVLI 153

Query: 138 HQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+  G  GQA+D+   A++I +++  L E   K+ G+T E++ + +DRD I++A++A 
Sbjct: 154 HQPAIQGAQGQATDLAIIAEEIDRMRAWLEETLSKHSGRTLEQMHEDIDRDKILTAAQAK 213

Query: 197 DWGVVDKVLMSR 208
           ++G++D+VL  R
Sbjct: 214 EYGLIDQVLSPR 225


>gi|302549126|ref|ZP_07301468.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           viridochromogenes DSM 40736]
 gi|302466744|gb|EFL29837.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           viridochromogenes DSM 40736]
          Length = 219

 Score =  172 bits (436), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 84/182 (46%), Positives = 119/182 (65%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           + ++LL +RIV +  Q+++  A  +CAQLL L AE+P+ +ISLYINSPGG V AG+AIYD
Sbjct: 32  LAAQLLAQRIVLLGTQVDEVSANRVCAQLLILSAEDPRTDISLYINSPGGSVHAGLAIYD 91

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ I   +ST  MG AASMG  LL  G  G R+ALPNARI++HQ S G  G  +DIE  
Sbjct: 92  TMQLIPNDVSTLAMGFAASMGQFLLCVGAPGKRYALPNARIMMHQGSAGIGGTTADIEIQ 151

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           A+++   KR +  +  ++ G   + + +  DRD   +A EA D+G+VD+V+ S  DI   
Sbjct: 152 AENLEHTKRTMERLIAEHTGHCAQTISRDGDRDRWFTAEEARDYGIVDQVVESLADIRPT 211

Query: 215 SK 216
           ++
Sbjct: 212 AQ 213


>gi|172041059|ref|YP_001800773.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           urealyticum DSM 7109]
 gi|171852363|emb|CAQ05339.1| ATP-dependent Clp protease proteolytic subunit 2 [Corynebacterium
           urealyticum DSM 7109]
          Length = 206

 Score =  172 bits (436), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 86/192 (44%), Positives = 132/192 (68%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE ++ G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE  +P ++I++
Sbjct: 9   ILPSFVEHSSYGAKESNPYNKLFEERIIFLGTQVDDAAANDIMAQLLVLEGLDPDRDITM 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++P + T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 69  YINSPGGSFTSLMAIYDTMQYVRPDVQTVCLGQAASAAAVLLAAGTPGKRAALPNARVLI 128

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP SGG  GQ SD+E  A +I ++++ +     ++ GKT E++    DRD I+ A  A 
Sbjct: 129 HQPASGGVQGQVSDLEIQANEIERMRKLMETTLARHTGKTEEQIRIDTDRDKILDAEAAK 188

Query: 197 DWGVVDKVLMSR 208
           ++G++D+V   R
Sbjct: 189 EYGIIDQVFEYR 200


>gi|227874920|ref|ZP_03993072.1| endopeptidase Clp [Mobiluncus mulieris ATCC 35243]
 gi|269976478|ref|ZP_06183463.1| Clp protease [Mobiluncus mulieris 28-1]
 gi|306818244|ref|ZP_07451974.1| ATP-dependent Clp protease proteolytic subunit [Mobiluncus mulieris
           ATCC 35239]
 gi|227844497|gb|EEJ54654.1| endopeptidase Clp [Mobiluncus mulieris ATCC 35243]
 gi|269935279|gb|EEZ91828.1| Clp protease [Mobiluncus mulieris 28-1]
 gi|304648983|gb|EFM46278.1| ATP-dependent Clp protease proteolytic subunit [Mobiluncus mulieris
           ATCC 35239]
          Length = 230

 Score =  172 bits (436), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 88/192 (45%), Positives = 136/192 (70%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++RIVF+  Q++D+ A  + AQLL LE+++P   I++
Sbjct: 34  ILPTFEERTAYGYKRQDPYAKLFEDRIVFLGEQVDDNSADDVMAQLLVLESQDPDSLITM 93

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+IKP I T C+GQAAS  ++LL+ G  G R ALPNAR+L+
Sbjct: 94  YINSPGGSFTAMTAIYDTMQYIKPEIQTVCLGQAASAAAVLLAGGSPGKRLALPNARVLI 153

Query: 138 HQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+  G  GQA+D+   A++I +++  L E   K+ G+T E++ + +DRD I++A++A 
Sbjct: 154 HQPAIQGAQGQATDLAIIAEEIDRMRAWLEETLSKHSGRTLEQMHEDIDRDKILTAAQAK 213

Query: 197 DWGVVDKVLMSR 208
           ++G++D+VL  R
Sbjct: 214 EYGLIDQVLSPR 225


>gi|227497467|ref|ZP_03927696.1| endopeptidase Clp [Actinomyces urogenitalis DSM 15434]
 gi|226833041|gb|EEH65424.1| endopeptidase Clp [Actinomyces urogenitalis DSM 15434]
          Length = 221

 Score =  172 bits (436), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 93/192 (48%), Positives = 134/192 (69%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D YS+L ++RIVF+  Q++D  A  + AQLL LE+++P   I++
Sbjct: 21  VMPQFEERTAYGFKRQDAYSKLFEDRIVFLGVQVDDASADDVMAQLLVLESQDPDGLITM 80

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+IKP I T C+GQAAS  ++LL+AG +G R ALPNARIL+
Sbjct: 81  YINSPGGSFTALTAIYDTMQYIKPQIQTVCLGQAASAAAVLLAAGSEGKRLALPNARILI 140

Query: 138 HQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+  G  GQASDIE  A ++ +++  L E    + G++ ++V   L+RD I++A  A 
Sbjct: 141 HQPAMEGMQGQASDIEIVANELDRMRTWLEETLAAHTGQSVDKVHADLERDKILTAQAAL 200

Query: 197 DWGVVDKVLMSR 208
           ++G+VD+VL SR
Sbjct: 201 EYGLVDQVLSSR 212


>gi|329946415|ref|ZP_08293982.1| endopeptidase Clp [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328527391|gb|EGF54389.1| endopeptidase Clp [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 224

 Score =  172 bits (436), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 92/192 (47%), Positives = 134/192 (69%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++RIVF+  Q++D  A  I AQLL LE+++P   I++
Sbjct: 24  VLPQFEERTAYGFKRQDPYAKLFEDRIVFMGVQVDDASADDIMAQLLVLESQDPDGLITM 83

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+IKP + T C+GQAAS  ++LL+AG +G R ALPNAR+L+
Sbjct: 84  YINSPGGSFTALTAIYDTMQYIKPQVQTVCLGQAASAAAVLLAAGSEGKRLALPNARVLI 143

Query: 138 HQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+  G  GQASDIE  A +I +++  L +    + G+  E++   L+RD I++A+ A 
Sbjct: 144 HQPAMEGMQGQASDIEIVADEIDRMRSWLEDTLAAHTGQDREKIHADLERDKILTAAAAK 203

Query: 197 DWGVVDKVLMSR 208
           D+G+VD+VL SR
Sbjct: 204 DYGIVDQVLTSR 215


>gi|325107894|ref|YP_004268962.1| ATP-dependent Clp protease proteolytic subunit ClpP [Planctomyces
           brasiliensis DSM 5305]
 gi|324968162|gb|ADY58940.1| ATP-dependent Clp protease proteolytic subunit ClpP [Planctomyces
           brasiliensis DSM 5305]
          Length = 215

 Score =  172 bits (436), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 79/176 (44%), Positives = 122/176 (69%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           +R   I   LL  RI+F+ G I D  A LI  +LL+L++EN  +++ LYINSPGG VTA 
Sbjct: 29  QRQMGIGDLLLDNRIIFLDGPIHDASANLIVMKLLYLQSENRHQDVHLYINSPGGSVTAT 88

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
           +AIYDTMQF+   ++T+C+G AAS G++L++ G KG R++LP++++++HQP G   GQ S
Sbjct: 89  LAIYDTMQFLDCDVATYCVGLAASGGAVLMAGGAKGKRYSLPHSKMMIHQPFGQVGGQVS 148

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           DIE  AQ+I+  +  LN+I   + G+  E + K  +RD  ++A EA ++G+VD+V+
Sbjct: 149 DIEIQAQEIINTRETLNQILADHTGQPIERIAKDTERDRYLTAKEAKEYGLVDEVV 204


>gi|297194375|ref|ZP_06911773.1| ATP-dependent Clp protease proteolytic subunit 2 [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197720967|gb|EDY64875.1| ATP-dependent Clp protease proteolytic subunit 2 [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 222

 Score =  172 bits (436), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 90/192 (46%), Positives = 135/192 (70%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP  VE+T++G R YD Y++L +ER++F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 23  VVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISI 82

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQF+KP I T CMGQAAS  ++LL+AG  G R ALP+AR+L+
Sbjct: 83  YINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPHARVLI 142

Query: 138 HQPSGGFSG-QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQPS      Q SD+E  A +I++++ +L E+  K+     E++   ++RD I++A  A 
Sbjct: 143 HQPSSQTGREQLSDLEIAANEILRMREQLEEMLAKHSTTPIEKIRDDIERDKILTADGAL 202

Query: 197 DWGVVDKVLMSR 208
            +G+VD+++ +R
Sbjct: 203 AYGLVDQIVSTR 214


>gi|63079329|gb|AAY29672.1| predicted ATP-dependent Clp protease proteolytic subunit 2
           [Bifidobacterium breve UCC2003]
          Length = 227

 Score =  172 bits (436), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 86/193 (44%), Positives = 138/193 (71%), Gaps = 3/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T  G ++ D YSRL ++RI+F+  Q++D  A  + AQLL LE+++P +++ +
Sbjct: 35  IMPQFVEKTPYGMKTQDAYSRLFEDRIIFLGVQVDDASADDVMAQLLVLESQDPNRDVMM 94

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL++G KG R  LPNAR+L+
Sbjct: 95  YINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLASGTKGKRLMLPNARVLI 154

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+   GF G+A++IE  A+++++++  L E    + G+  E++ + ++ D  ++A EA
Sbjct: 155 HQPAIDQGF-GKATEIEIQAKEMLRMREWLEETLANHTGQDVEKIRRDIEVDTFLTADEA 213

Query: 196 CDWGVVDKVLMSR 208
            D+G+VD+VL  R
Sbjct: 214 KDYGIVDEVLAHR 226


>gi|182438717|ref|YP_001826436.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178467233|dbj|BAG21753.1| putative ATP-dependent Clp protease proteolytic subunit 2
           [Streptomyces griseus subsp. griseus NBRC 13350]
          Length = 227

 Score =  172 bits (436), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 88/192 (45%), Positives = 137/192 (71%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP  VE+T++G R YD Y++L +ER++F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 28  VVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISI 87

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQF+KP I T CMGQAAS  ++LL+AG  G R ALP+AR+L+
Sbjct: 88  YINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPHARVLI 147

Query: 138 HQPSGGFSG-QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQPS      Q SD+E  A +I++++ +L ++  ++     E++ + ++RD I++A +A 
Sbjct: 148 HQPSSQTGREQLSDLEIAANEILRMRTQLEQMLARHSTTPLEKISEDIERDKILTAEDAL 207

Query: 197 DWGVVDKVLMSR 208
            +G+VD+++ +R
Sbjct: 208 AYGLVDQIVSTR 219


>gi|30171735|gb|AAP20401.1| ClpP [Listeria monocytogenes]
          Length = 139

 Score =  172 bits (436), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 80/134 (59%), Positives = 104/134 (77%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IYSRLLK+RI+ +   I+D++A  I +QL FL+A++P+K+I LYINSPGG ++AGMAIYD
Sbjct: 1   IYSRLLKDRIIMLGSAIDDNVANSIVSQLFFLDAQDPEKDIFLYINSPGGSISAGMAIYD 60

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM F+K  + T  MG AASMGS LL+AG  G RFALPNA I++HQP GG  GQA++IE  
Sbjct: 61  TMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEIMIHQPLGGAQGQATEIEIA 120

Query: 155 AQDIVKIKRRLNEI 168
           A+ I+KIK R+N I
Sbjct: 121 ARHILKIKERMNTI 134


>gi|326779366|ref|ZP_08238631.1| Endopeptidase Clp [Streptomyces cf. griseus XylebKG-1]
 gi|326659699|gb|EGE44545.1| Endopeptidase Clp [Streptomyces cf. griseus XylebKG-1]
          Length = 222

 Score =  172 bits (435), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 88/192 (45%), Positives = 137/192 (71%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP  VE+T++G R YD Y++L +ER++F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 23  VVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISI 82

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQF+KP I T CMGQAAS  ++LL+AG  G R ALP+AR+L+
Sbjct: 83  YINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPHARVLI 142

Query: 138 HQPSGGFSG-QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQPS      Q SD+E  A +I++++ +L ++  ++     E++ + ++RD I++A +A 
Sbjct: 143 HQPSSQTGREQLSDLEIAANEILRMRTQLEQMLARHSTTPLEKISEDIERDKILTAEDAL 202

Query: 197 DWGVVDKVLMSR 208
            +G+VD+++ +R
Sbjct: 203 AYGLVDQIVSTR 214


>gi|239917500|ref|YP_002957058.1| ATP-dependent Clp protease proteolytic subunit ClpP [Micrococcus
           luteus NCTC 2665]
 gi|281414010|ref|ZP_06245752.1| ATP-dependent Clp protease proteolytic subunit ClpP [Micrococcus
           luteus NCTC 2665]
 gi|289705667|ref|ZP_06502052.1| Clp protease [Micrococcus luteus SK58]
 gi|239838707|gb|ACS30504.1| ATP-dependent Clp protease proteolytic subunit ClpP [Micrococcus
           luteus NCTC 2665]
 gi|289557615|gb|EFD50921.1| Clp protease [Micrococcus luteus SK58]
          Length = 221

 Score =  172 bits (435), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 92/192 (47%), Positives = 134/192 (69%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++RIVF+  Q++D  A  + AQLL LEA + +++I+L
Sbjct: 23  ILPQFEERTPYGFKRQDPYAKLFEDRIVFLGAQVDDASADDVMAQLLVLEAMDSERDITL 82

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQFI+P + T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 83  YINSPGGSFTAMTAIYDTMQFIRPEVQTVCLGQAASAAAVLLAAGAPGKRLALPNARVLI 142

Query: 138 HQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+  G  G A+D+E HAQ+I +++  + E       +T EEV + +DRD  +SA +A 
Sbjct: 143 HQPAMQGDRGTATDLEIHAQEINRMRVWMEETLASLTNRTPEEVSQDIDRDKFLSAEQAL 202

Query: 197 DWGVVDKVLMSR 208
           ++G+VD+VL SR
Sbjct: 203 EYGLVDEVLASR 214


>gi|291297753|ref|YP_003509031.1| endopeptidase Clp [Stackebrandtia nassauensis DSM 44728]
 gi|290566973|gb|ADD39938.1| Endopeptidase Clp [Stackebrandtia nassauensis DSM 44728]
          Length = 206

 Score =  172 bits (435), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 85/190 (44%), Positives = 131/190 (68%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVE+T  GER++DIYSRLL +RI+F+  +I+D +A ++ AQLL LE+ +P  +I LY
Sbjct: 6   IPTVVEKTAGGERAFDIYSRLLSDRIIFIGTEIDDGVANVVMAQLLHLESVSPDLQIGLY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  +A  AIYDTM+FI+P I+T CMG A+S  ++LL+AG  G R  L +A+++LH
Sbjct: 66  INSPGGSFSALTAIYDTMEFIRPDIATTCMGHASSAAAVLLAAGTPGKRSMLRHAKVMLH 125

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPS    G   D+   A+++ K++  ++EI   + G    ++ +  DR+   SA EA ++
Sbjct: 126 QPSSQAQGTLPDLAIQAKEVAKVRAEMDEILSHHTGHPVAKIREDTDRNKTFSAQEAVEY 185

Query: 199 GVVDKVLMSR 208
           G+VD+++ SR
Sbjct: 186 GLVDQIITSR 195


>gi|317508501|ref|ZP_07966168.1| Clp protease [Segniliparus rugosus ATCC BAA-974]
 gi|316253192|gb|EFV12595.1| Clp protease [Segniliparus rugosus ATCC BAA-974]
          Length = 210

 Score =  172 bits (435), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 89/194 (45%), Positives = 132/194 (68%), Gaps = 3/194 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP  +E T+ G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE+ +P ++I++
Sbjct: 11  IVPSFIEHTSTGVKETNPYTKLFEERIIFLGTQVDDTSANDIMAQLLVLESLDPDRDITM 70

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQF+   I+T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 71  YINSPGGSFTSLMAIYDTMQFVHCDIATVCLGQAASAAAVLLAAGTPGKRAALPNARVLI 130

Query: 138 HQP---SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           HQP    G   GQA+D+E  A +I +++R +      + GK+ +EV K  DRD I++A E
Sbjct: 131 HQPRIDGGAIRGQATDLEIQAAEIERMRRLMETTLATHTGKSADEVRKDTDRDKILTAEE 190

Query: 195 ACDWGVVDKVLMSR 208
           A ++G++D V   R
Sbjct: 191 AKEYGIIDTVYPYR 204


>gi|30171723|gb|AAP20395.1| ClpP [Listeria monocytogenes]
 gi|30171757|gb|AAP20412.1| ClpP [Listeria monocytogenes]
          Length = 139

 Score =  171 bits (434), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 80/134 (59%), Positives = 105/134 (78%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IYSRLLK+RI+ +   I++++A  I +QLLFL+A++P+K+I LYINSPGG ++AGMAIYD
Sbjct: 1   IYSRLLKDRIIMLGSAIDENVANSIVSQLLFLDAQDPEKDIFLYINSPGGSISAGMAIYD 60

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM F+K  + T  MG AASMGS LL+AG  G RFALPNA I++HQP GG  GQA++IE  
Sbjct: 61  TMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEIMIHQPLGGAQGQATEIEIA 120

Query: 155 AQDIVKIKRRLNEI 168
           A+ I+KIK R+N I
Sbjct: 121 ARHILKIKERMNTI 134


>gi|84494298|ref|ZP_00993417.1| ATP-dependent Clp protease proteolytic subunit [Janibacter sp.
           HTCC2649]
 gi|84383791|gb|EAP99671.1| ATP-dependent Clp protease proteolytic subunit [Janibacter sp.
           HTCC2649]
          Length = 219

 Score =  171 bits (434), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 85/192 (44%), Positives = 136/192 (70%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T+ G +  D Y++L ++RI+F+  Q++D  A  + AQL+ LE+++P ++I +
Sbjct: 22  ILPQFEERTSYGMKRTDPYTKLFEDRIIFLGVQVDDASADDVIAQLIVLESQDPDRDILM 81

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+I+P + TF +GQAAS  ++LL AG  G R+ALPNAR+L+
Sbjct: 82  YINSPGGSFTAMTAIYDTMQYIRPDVQTFVIGQAASAAAVLLGAGAPGKRYALPNARVLI 141

Query: 138 HQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+  G  G ASD+E  A ++++++  L +    + G+  E V K ++RD I+SA++A 
Sbjct: 142 HQPAIEGTGGMASDLEIQANEVLRMRGWLEDTIASHSGRDVELVRKDIERDKILSAAQAK 201

Query: 197 DWGVVDKVLMSR 208
           ++G++D+VL SR
Sbjct: 202 EYGLIDEVLASR 213


>gi|323359781|ref|YP_004226177.1| protease subunit of ATP-dependent Clp protease [Microbacterium
           testaceum StLB037]
 gi|323276152|dbj|BAJ76297.1| protease subunit of ATP-dependent Clp protease [Microbacterium
           testaceum StLB037]
          Length = 220

 Score =  171 bits (434), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 90/193 (46%), Positives = 135/193 (69%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++R++F+  Q++D  A  + AQLL LE+++P ++I +
Sbjct: 19  VLPQFEERTAYGYKRQDPYNKLFEDRVIFLGVQVDDASADDVMAQLLVLESQDPDRDIIM 78

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ++ P I T  +GQAAS  S+LL+AG  G R ALPNARIL+
Sbjct: 79  YINSPGGSFTAMTAIYDTMQYVSPQIQTVVLGQAASAASVLLAAGAPGKRLALPNARILI 138

Query: 138 HQPSGGFS--GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+ G +  GQASDIE  A +I++++  L E   ++ G+   +V K +DRD I+S+ EA
Sbjct: 139 HQPAMGEAGHGQASDIEIQAAEILRMRTWLEETMARHTGQDAAKVNKDIDRDKILSSQEA 198

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD+VL +R
Sbjct: 199 MEYGIVDQVLTTR 211


>gi|283455718|ref|YP_003360282.1| ATP-dependent Clp protease proteolytic subunit 1 [Bifidobacterium
           dentium Bd1]
 gi|283102352|gb|ADB09458.1| clp1 ATP-dependent Clp protease proteolytic subunit 1
           [Bifidobacterium dentium Bd1]
          Length = 171

 Score =  171 bits (434), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 78/156 (50%), Positives = 113/156 (72%)

Query: 50  QIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMG 109
           +++D MA  ICAQ+L L AE+P+K+I LYINSPGG +TAGMAIYDTMQ I+P ++T  +G
Sbjct: 4   EVKDDMANRICAQMLMLAAEDPKKDIWLYINSPGGSITAGMAIYDTMQLIEPDVATVGLG 63

Query: 110 QAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIY 169
             ASMG  LLS+G KG RF   +AR+L+HQPSGG  G A+D+  +A+ I+ +K+ ++E+ 
Sbjct: 64  MCASMGQFLLSSGTKGKRFLTSHARVLMHQPSGGIGGTATDVRINAELIMDMKKTMSELT 123

Query: 170 VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            +  G T EE+ +  + DH  +A EA ++G VDK++
Sbjct: 124 AEQTGHTVEEIYRDNEYDHWFTAQEALEYGFVDKLV 159


>gi|194476660|ref|YP_002048839.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paulinella
           chromatophora]
 gi|171191667|gb|ACB42629.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paulinella
           chromatophora]
          Length = 193

 Score =  171 bits (434), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 86/191 (45%), Positives = 120/191 (62%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++ +  E   +  +  +  +RL+ ERI+F+   +   +   I  QLL LEA++ +K+I L
Sbjct: 1   MILLTAEDMTQNAQRLNFTARLMDERIIFLGEAVTAEVTNRIVTQLLLLEADDSEKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I DTMQ IKP + T C+G AASMG+ LL+AG KG R +L N+RI++
Sbjct: 61  YINSPGGSVYDGLGILDTMQHIKPDVYTVCVGLAASMGAFLLAAGTKGKRCSLFNSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQASD+   A +I  +K RLN       GK+  +VE   DRD  MSA  A  
Sbjct: 121 HQPSGGIRGQASDMRIQANEITYLKHRLNLELSNFTGKSLHQVEGDTDRDFFMSAYSAKA 180

Query: 198 WGVVDKVLMSR 208
           +G++DKV+  R
Sbjct: 181 YGLIDKVVSRR 191


>gi|111018381|ref|YP_701353.1| ATP-dependent Clp protease proteolytic subunit [Rhodococcus jostii
           RHA1]
 gi|116243108|sp|Q0SGZ1|CLPP1_RHOSR RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|110817911|gb|ABG93195.1| ATP-dependent Clp protease [Rhodococcus jostii RHA1]
          Length = 220

 Score =  171 bits (434), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 86/192 (44%), Positives = 134/192 (69%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +E ++ G +  + Y++L +ERI+F+  Q++D  A  + AQLL LE+ +P ++I++
Sbjct: 23  ILPSFIEHSSYGVKESNPYNKLFEERIIFLGVQVDDASANDVMAQLLVLESLDPDRDITM 82

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++  I+T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 83  YINSPGGSFTSLMAIYDTMQYVRADITTVCLGQAASAAAVLLAAGSPGKRLALPNARVLI 142

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP +GG  GQ SD+E  A +I +++R +     K+ GK    + K  DRD I++A+EA 
Sbjct: 143 HQPATGGIQGQVSDLEIQAAEIERMRRLMETTLAKHTGKDAAVIRKDTDRDKILTAAEAK 202

Query: 197 DWGVVDKVLMSR 208
           ++G++D VL  R
Sbjct: 203 EYGIIDDVLEYR 214


>gi|325066964|ref|ZP_08125637.1| Endopeptidase Clp [Actinomyces oris K20]
          Length = 224

 Score =  171 bits (434), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 91/192 (47%), Positives = 135/192 (70%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++RIVF+  Q++D  A  I AQLL LE+++P   I++
Sbjct: 24  VLPQFEERTAYGFKRQDPYAKLFEDRIVFMGVQVDDASADDIMAQLLVLESQDPDGLITM 83

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+IKP + T C+GQAAS  ++LL+AG +G R ALPNAR+L+
Sbjct: 84  YINSPGGSFTALTAIYDTMQYIKPQVQTVCLGQAASAAAVLLAAGSEGKRLALPNARVLI 143

Query: 138 HQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+  G  GQASDIE  A +I +++  L +    + G+  E++   L+RD I++A++A 
Sbjct: 144 HQPAMEGVQGQASDIEIVANEIDRMRSWLEDTLAAHTGRDREKIHADLERDKILTAADAK 203

Query: 197 DWGVVDKVLMSR 208
           ++G+VD+VL SR
Sbjct: 204 EYGIVDQVLTSR 215


>gi|170516914|gb|ACB15393.1| CplP2 [Bifidobacterium longum]
          Length = 233

 Score =  171 bits (434), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 86/193 (44%), Positives = 139/193 (72%), Gaps = 3/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T  G ++ D YSRL ++RI+F+  Q++D  A  + AQLL LE+++P +++ +
Sbjct: 41  IMPQFVEKTPYGMKTQDAYSRLFEDRIIFLGVQVDDASADDVMAQLLVLESQDPNRDVMM 100

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL++G KG R  LPNAR+L+
Sbjct: 101 YINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLASGTKGKRLMLPNARVLI 160

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+   GF G+A++IE  A+++++++  L E   K+ G+  E++ + ++ D  ++A EA
Sbjct: 161 HQPAIDQGF-GKATEIEIQAKEMLRMREWLEETLAKHTGQDVEKIRRDIEVDTFLTAPEA 219

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD+VL  R
Sbjct: 220 KEYGIVDEVLEHR 232


>gi|23465517|ref|NP_696120.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           longum NCC2705]
 gi|46190462|ref|ZP_00206473.1| COG0740: Protease subunit of ATP-dependent Clp proteases
           [Bifidobacterium longum DJO10A]
 gi|189439548|ref|YP_001954629.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           longum DJO10A]
 gi|227546002|ref|ZP_03976051.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           longum subsp. infantis ATCC 55813]
 gi|239621942|ref|ZP_04664973.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           longum subsp. infantis CCUG 52486]
 gi|312132957|ref|YP_004000296.1| clpp1 [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482288|ref|ZP_07941309.1| Clp protease [Bifidobacterium sp. 12_1_47BFAA]
 gi|322688891|ref|YP_004208625.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           longum subsp. infantis 157F]
 gi|67460559|sp|Q8G5R0|CLPP1_BIFLO RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|23326177|gb|AAN24756.1| ATP-dependent Clp protease proteolytic subunit 2 [Bifidobacterium
           longum NCC2705]
 gi|189427983|gb|ACD98131.1| ATP-dependent Clp proteases Protease subunit [Bifidobacterium
           longum DJO10A]
 gi|227213636|gb|EEI81485.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           longum subsp. infantis ATCC 55813]
 gi|239515133|gb|EEQ55000.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           longum subsp. infantis CCUG 52486]
 gi|291517064|emb|CBK70680.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Bifidobacterium longum subsp. longum F8]
 gi|311773939|gb|ADQ03427.1| ClpP1 [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916304|gb|EFV37705.1| Clp protease [Bifidobacterium sp. 12_1_47BFAA]
 gi|320460227|dbj|BAJ70847.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           longum subsp. infantis 157F]
          Length = 233

 Score =  171 bits (434), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 86/193 (44%), Positives = 139/193 (72%), Gaps = 3/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T  G ++ D YSRL ++RI+F+  Q++D  A  + AQLL LE+++P +++ +
Sbjct: 41  IMPQFVEKTPYGMKTQDAYSRLFEDRIIFLGVQVDDASADDVMAQLLVLESQDPNRDVMM 100

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL++G KG R  LPNAR+L+
Sbjct: 101 YINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLASGTKGKRLMLPNARVLI 160

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+   GF G+A++IE  A+++++++  L E   K+ G+  E++ + ++ D  ++A EA
Sbjct: 161 HQPAIDQGF-GKATEIEIQAKEMLRMREWLEETLAKHTGQDVEKIRRDIEVDTFLTAPEA 219

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD+VL  R
Sbjct: 220 KEYGIVDEVLEHR 232


>gi|149178550|ref|ZP_01857137.1| ATP-dependent clp protease proteolytic subunit [Planctomyces maris
           DSM 8797]
 gi|148842568|gb|EDL56944.1| ATP-dependent clp protease proteolytic subunit [Planctomyces maris
           DSM 8797]
          Length = 208

 Score =  171 bits (434), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 85/207 (41%), Positives = 135/207 (65%), Gaps = 5/207 (2%)

Query: 13  DVFLGLVPMVVEQTNRG---ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           D   G +P    Q  R    +R   I   LL  RI+F+   I D  A LI  +LL+L++E
Sbjct: 3   DPLSGQMPTQANQRARSYSQQRQMGIGDLLLDNRIIFLDSVINDASANLIVMKLLYLQSE 62

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           N  ++I+LY+NSPGG VT+ MAIYDTMQFI+  ++T+C+G AAS G++L++ G+KG R+ 
Sbjct: 63  NRHQDINLYVNSPGGSVTSTMAIYDTMQFIECDVATYCVGLAASGGAILVAGGQKGKRYI 122

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LP+A++++HQP G   GQ SDIE  A+DI+  +  LN+I   + G++ E++     RD  
Sbjct: 123 LPHAKMMIHQPYGEVGGQVSDIEIQAKDILDTREVLNQILANHTGQSIEQIALDTSRDRF 182

Query: 190 MSASEACDWGVVDKVLMSRIDIEEKSK 216
           ++A ++ ++G+VD++L+   D ++K K
Sbjct: 183 LTAPQSVEYGLVDELLVR--DKKDKDK 207


>gi|227504046|ref|ZP_03934095.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           striatum ATCC 6940]
 gi|227199376|gb|EEI79424.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           striatum ATCC 6940]
          Length = 207

 Score =  171 bits (434), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 86/192 (44%), Positives = 135/192 (70%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +EQ  +G ++ + YS+L +ERI+F+  Q++D  A  I AQLL LE+++P ++I++
Sbjct: 12  VLPEFIEQNAQGSKTTNPYSKLFEERIIFLGTQVDDTSANDIMAQLLVLESQDPDRDITM 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA MAIYDTM++++P + T C+GQAAS  ++LL+AG  G R ALPN+R+L+
Sbjct: 72  YINSPGGSFTALMAIYDTMRYVRPDVQTVCLGQAASAAAVLLAAGAPGKRAALPNSRVLI 131

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP + G  GQ SD+E  A +I +++R +     ++ G+T E+V    DRD I++A EA 
Sbjct: 132 HQPRTQGTQGQVSDLEIEANEIERMRRLMENTLAEHTGRTAEQVRIDTDRDKILTAHEAV 191

Query: 197 DWGVVDKVLMSR 208
           ++G++D V   R
Sbjct: 192 EYGLIDTVFDYR 203


>gi|298208499|ref|YP_003716678.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Croceibacter
           atlanticus HTCC2559]
 gi|83848422|gb|EAP86291.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Croceibacter
           atlanticus HTCC2559]
          Length = 182

 Score =  171 bits (434), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 81/170 (47%), Positives = 120/170 (70%), Gaps = 1/170 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I S  L+ER VF+ GQ++D  A  +  +L++L++++  +EI  +INSPGG VTAG ++YD
Sbjct: 12  IDSNFLEERKVFLWGQVDDKSAKHVVDRLMYLDSQS-NEEIQFFINSPGGYVTAGFSMYD 70

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           T+  +K P+ST   G  ASMGS+LLSAG+KG RF  P+AR+++HQPSGG  GQAS+IE  
Sbjct: 71  TIMSLKSPVSTIASGLCASMGSILLSAGKKGRRFIQPHARVMIHQPSGGARGQASNIEIQ 130

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           AQ+I+K K    +I   NC + +++V K  +RD+ M A E+ D+G+VD +
Sbjct: 131 AQEIIKTKELSAKILADNCDQDFDKVMKDFNRDYWMDAQESIDYGIVDAI 180


>gi|296139202|ref|YP_003646445.1| endopeptidase Clp [Tsukamurella paurometabola DSM 20162]
 gi|296027336|gb|ADG78106.1| Endopeptidase Clp [Tsukamurella paurometabola DSM 20162]
          Length = 195

 Score =  171 bits (434), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 76/187 (40%), Positives = 126/187 (67%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+E+   GER  D+YS LL ER+V++   I+  +A  + AQLLFLE++NP  +I LY
Sbjct: 6   IPTVIERRPNGERVSDVYSYLLSERVVYLGTAIDAGVANAVVAQLLFLESDNPDSDIQLY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           IN  GG   A +AIYDTM++I+ PI+T C+GQA ++G++LL+AG +G R ALP++R++LH
Sbjct: 66  INCEGGDPAAMLAIYDTMRYIRSPIATTCVGQAVAVGAVLLAAGARGKRVALPHSRVVLH 125

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP+    G   D+   A ++V+++ ++ +I   + G+T E +    D D + +  +A  +
Sbjct: 126 QPAAQGRGTIPDLILQADEVVRVRGQMEQILASHTGQTAERLRADTDHDRVFTPPDAVAY 185

Query: 199 GVVDKVL 205
           G++D+V+
Sbjct: 186 GLIDEVI 192


>gi|271964885|ref|YP_003339081.1| endopeptidase Clp [Streptosporangium roseum DSM 43021]
 gi|270508060|gb|ACZ86338.1| Endopeptidase Clp [Streptosporangium roseum DSM 43021]
          Length = 192

 Score =  171 bits (434), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 82/171 (47%), Positives = 118/171 (69%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL++RIV +  ++ D +A  IC +LL L A + + +I LYINSPGG V+AGMAIYD
Sbjct: 12  LYQRLLRKRIVVLGSEVNDEVANRICGELLLLSAGDDRSDIWLYINSPGGSVSAGMAIYD 71

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            MQ+I   ++T  MG A SMG  LL AG  G R+ALP+ARI++HQPSGG  G ASDI   
Sbjct: 72  VMQYIPNDVATVGMGLAGSMGQFLLCAGAPGKRYALPHARIMMHQPSGGVGGTASDIVIQ 131

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+ ++  K+ ++E    + G+  E++E+  DRD   +A+EA D+G+VD+V+
Sbjct: 132 AEQMLYTKQMMSERIAFHTGQPLEQIEEDWDRDRWFTATEAKDYGLVDEVI 182


>gi|108796955|ref|YP_636255.1| ATP-dependent Clp protease proteolytic subunit [Pseudendoclonium
           akinetum]
 gi|122217843|sp|Q3ZJ12|CLPP_PSEAK RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|56159653|gb|AAV80677.1| proteolytic subunit 2 of clp protease [Pseudendoclonium akinetum]
          Length = 198

 Score =  171 bits (434), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 74/174 (42%), Positives = 121/174 (69%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+   ++D +A  +   +L+L AE+  K I +YINSPGG VT G+ ++
Sbjct: 22  DLYNRLYRERVLFLCQDLDDELANQLIGIMLYLNAEDKSKGIYVYINSPGGSVTCGVGVF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M +IK  ++T C+G AASM S +L+ G KG R ALP++RI++HQP GG  GQAS +  
Sbjct: 82  DAMNYIKSDVTTICVGTAASMASFVLAGGRKGKRLALPHSRIMIHQPEGGSQGQASVVLS 141

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
            ++++++I+  + +IY +  G+T E + + ++RD  MSA EA D+G+VD++  S
Sbjct: 142 ESEEVLRIRDEVAQIYSERTGQTLERISRDMNRDQFMSAREAKDYGLVDQIASS 195


>gi|300934279|ref|ZP_07149535.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           resistens DSM 45100]
          Length = 206

 Score =  171 bits (434), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 84/192 (43%), Positives = 134/192 (69%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE ++ G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE  +P ++I++
Sbjct: 9   ILPSFVEHSSYGAKESNPYNKLFEERIIFLGTQVDDASANDIMAQLLVLEGLDPDRDITM 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++P + T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 69  YINSPGGSFTSLMAIYDTMQYVRPDVQTVCLGQAASAAAVLLAAGTPGKRAALPNARVLI 128

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP +GG  GQ SD+E  A++I +++  +     ++ G++ E++    DRD I++A EA 
Sbjct: 129 HQPATGGVQGQVSDLEIQAKEIERMRTLMETTLARHTGRSAEQIRIDTDRDKILTAEEAK 188

Query: 197 DWGVVDKVLMSR 208
           ++G++D+V   R
Sbjct: 189 EYGIIDQVFEYR 200


>gi|223947307|gb|ACN27737.1| unknown [Zea mays]
          Length = 310

 Score =  171 bits (434), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 79/172 (45%), Positives = 122/172 (70%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D  + LL++RIVF+   ++D  A LI +QLL L+AE+  K+I L+INSPGG +TAGM +Y
Sbjct: 73  DTTNMLLRQRIVFLGSPVDDTSADLIISQLLLLDAEDQTKDIKLFINSPGGSITAGMGVY 132

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M+F K  +ST C G AASMG+ LL+AG KG R+ +PNARI++HQPSGG  G+ +++  
Sbjct: 133 DAMKFCKADVSTVCFGLAASMGAFLLAAGTKGKRYCMPNARIMIHQPSGGAGGKVTEMGL 192

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
             ++++  K ++N+I  +  GK+ E++++    D+ MS SEA D+G+VD ++
Sbjct: 193 QIREMMYEKIKINKIMSRITGKSEEQIDEDTKFDYFMSPSEAKDYGIVDNII 244


>gi|71028320|ref|XP_763803.1| ATP-dependent Clp protease proteolytic subunit [Theileria parva
           strain Muguga]
 gi|68350757|gb|EAN31520.1| ATP-dependent Clp protease proteolytic subunit, putative [Theileria
           parva]
          Length = 241

 Score =  171 bits (434), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 79/181 (43%), Positives = 124/181 (68%), Gaps = 2/181 (1%)

Query: 30  ERSYD--IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVT 87
           + SYD  I    +K R++F++G++ D ++  I + +L +   +P   I  YINSPGG VT
Sbjct: 61  KESYDKAIDEFFIKNRMIFLSGELNDKVSFKIISSILRINENDPNLPIKFYINSPGGSVT 120

Query: 88  AGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQ 147
           AG+AI+D ++ +K P+ T  +GQAASMG+ LL++G KGMR+A+PN+RI++HQP GG  GQ
Sbjct: 121 AGLAIFDVLRSLKMPVETVSLGQAASMGAFLLASGTKGMRYAMPNSRIMIHQPLGGAHGQ 180

Query: 148 ASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           ASDIE  A +I++I+  LN    +  GK+ +E+EK   RD+ M  SEA  +G++D ++ +
Sbjct: 181 ASDIEIQANEILQIREILNTNLSRFTGKSVQEIEKDCSRDNYMRPSEALQYGLIDHIIQT 240

Query: 208 R 208
           +
Sbjct: 241 Q 241


>gi|198433851|ref|XP_002124576.1| PREDICTED: similar to predicted protein isoform 2 [Ciona
           intestinalis]
          Length = 139

 Score =  171 bits (434), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 79/129 (61%), Positives = 104/129 (80%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YIN+PGG VT+G+AIYDTMQ IK P+ST+ +GQA+SMGSLLL+AGE GMR ALPN+RI+
Sbjct: 1   MYINTPGGTVTSGLAIYDTMQLIKCPVSTWVVGQASSMGSLLLAAGEPGMRNALPNSRIM 60

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG SGQASDI   A +I K+K +LN++YV++ G+ YE +EK LDRD+ M   EA 
Sbjct: 61  VHQPLGGASGQASDIVIQANEIKKVKEKLNKLYVQHTGQEYEVIEKALDRDNFMDPYEAK 120

Query: 197 DWGVVDKVL 205
            +G++D VL
Sbjct: 121 LFGLIDNVL 129


>gi|318060125|ref|ZP_07978848.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces sp.
           SA3_actG]
 gi|318076383|ref|ZP_07983715.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces sp.
           SA3_actF]
          Length = 218

 Score =  171 bits (433), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 90/192 (46%), Positives = 136/192 (70%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP  VE+T++G R YD Y++L +ER++F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 20  IVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISI 79

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQF+KP I T CMGQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 80  YINSPGGSMTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGAPGKRMALPNARVLI 139

Query: 138 HQPSGGFSG-QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQPS      Q SD+E  A++I++++ +L ++  K+     E++   ++RD I++A +A 
Sbjct: 140 HQPSSQTGREQLSDLEIAAKEIMRMRTQLEDMLAKHSTTPIEKIRDDIERDKILTAEDAL 199

Query: 197 DWGVVDKVLMSR 208
            +G+VD++   R
Sbjct: 200 AYGLVDQITTPR 211


>gi|295838901|ref|ZP_06825834.1| Clp protease [Streptomyces sp. SPB74]
 gi|302519065|ref|ZP_07271407.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sp. SPB78]
 gi|197695453|gb|EDY42386.1| Clp protease [Streptomyces sp. SPB74]
 gi|302427960|gb|EFK99775.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sp. SPB78]
          Length = 223

 Score =  171 bits (433), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 90/192 (46%), Positives = 136/192 (70%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP  VE+T++G R YD Y++L +ER++F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 25  IVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISI 84

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQF+KP I T CMGQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 85  YINSPGGSMTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGAPGKRMALPNARVLI 144

Query: 138 HQPSGGFSG-QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQPS      Q SD+E  A++I++++ +L ++  K+     E++   ++RD I++A +A 
Sbjct: 145 HQPSSQTGREQLSDLEIAAKEIMRMRTQLEDMLAKHSTTPIEKIRDDIERDKILTAEDAL 204

Query: 197 DWGVVDKVLMSR 208
            +G+VD++   R
Sbjct: 205 AYGLVDQITTPR 216


>gi|217071428|gb|ACJ84074.1| unknown [Medicago truncatula]
          Length = 297

 Score =  171 bits (433), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 76/172 (44%), Positives = 122/172 (70%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D  + LL++RIVF+  Q++D  A  + +QLLFL+A++P K+I L+INSPGG VTAGM +Y
Sbjct: 79  DTTNMLLRQRIVFLGSQVDDMTADFVISQLLFLDADDPTKDIKLFINSPGGSVTAGMGVY 138

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M+  K  +ST C+G AASMG+ LL+AG KG R+ +PN+R+++HQP G   G+A+++  
Sbjct: 139 DAMKLCKADVSTVCLGLAASMGAFLLAAGTKGKRYCMPNSRVMIHQPLGSAGGKATEMSI 198

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            A++++  K ++N+I  +  GK  E++E   DRD+ M+  E  ++G++D V+
Sbjct: 199 RARELMYHKIKINKILSRITGKPEEQIELDTDRDNFMNPWEGKEYGLIDDVI 250


>gi|296453941|ref|YP_003661084.1| endopeptidase Clp [Bifidobacterium longum subsp. longum JDM301]
 gi|296183372|gb|ADH00254.1| Endopeptidase Clp [Bifidobacterium longum subsp. longum JDM301]
          Length = 233

 Score =  171 bits (433), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 86/193 (44%), Positives = 139/193 (72%), Gaps = 3/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T  G ++ D YSRL ++RI+F+  Q++D  A  + AQLL LE+++P +++ +
Sbjct: 41  IMPQFVEKTPYGMKTQDAYSRLFEDRIIFLGVQVDDASADDVMAQLLVLESQDPNRDVMM 100

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL++G KG R  LPNAR+L+
Sbjct: 101 YINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLASGTKGKRLMLPNARVLI 160

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+   GF G+A++IE  A+++++++  L E   K+ G+  E++ + ++ D  ++A EA
Sbjct: 161 HQPAIDQGF-GKATEIEIQAKEMLRMREWLEETLAKHTGQDVEKIRRDIEVDTFLTAPEA 219

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD+VL  R
Sbjct: 220 KEYGIVDEVLEHR 232


>gi|319440930|ref|ZP_07990086.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           variabile DSM 44702]
          Length = 227

 Score =  171 bits (433), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 86/192 (44%), Positives = 134/192 (69%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE ++ G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE  +P ++I++
Sbjct: 30  ILPSFVEHSSYGAKESNPYNKLFEERIIFLGTQVDDASANDIMAQLLVLEGLDPDRDITM 89

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++P I T C+GQAAS  ++LL+AG  G R ALPN+R+L+
Sbjct: 90  YINSPGGSFTSLMAIYDTMQYVRPDIVTVCLGQAASAAAVLLAAGTPGKRAALPNSRVLI 149

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP + G  GQ SD+E  A++I +++R + E   ++ G+T E+V    DRD  ++A EA 
Sbjct: 150 HQPATQGTQGQVSDLEIQAREIERMRRLMEETLSRHTGQTAEQVRLDTDRDKFLTADEAK 209

Query: 197 DWGVVDKVLMSR 208
           ++G++D+V   R
Sbjct: 210 EYGIIDQVFEYR 221


>gi|260906247|ref|ZP_05914569.1| ATP-dependent Clp protease proteolytic subunit [Brevibacterium
           linens BL2]
          Length = 210

 Score =  171 bits (433), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 89/193 (46%), Positives = 133/193 (68%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L  +R++F+  Q++D  A  + AQLL LE+++P ++I+L
Sbjct: 15  VMPQFEERTPYGFKRQDPYTKLFDDRVIFLGVQVDDTSADDVMAQLLVLESQDPDRDITL 74

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+IKP I T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 75  YINSPGGSFTAMTAIYDTMQYIKPEIQTVCLGQAASAAAVLLAAGTPGKRLALPNARVLI 134

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+  G   GQASDIE  A ++ ++++ L      +  K+ E+V   ++RD  ++A +A
Sbjct: 135 HQPAMEGQGQGQASDIEIQAAEVFRMRQWLETTLSDHSNKSPEQVSNDIERDLFLTAEQA 194

Query: 196 CDWGVVDKVLMSR 208
            D+G+VD+VL SR
Sbjct: 195 KDYGLVDQVLTSR 207


>gi|269956966|ref|YP_003326755.1| endopeptidase Clp [Xylanimonas cellulosilytica DSM 15894]
 gi|269305647|gb|ACZ31197.1| Endopeptidase Clp [Xylanimonas cellulosilytica DSM 15894]
          Length = 195

 Score =  171 bits (432), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 77/190 (40%), Positives = 127/190 (66%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+ Q  RGER+ D+YS+LL ERIV++   I+  +A  + AQLLFLE+ +P  +I LY
Sbjct: 6   IPTVIAQHARGERALDVYSQLLTERIVYLGTPIDAGVANALIAQLLFLESADPDADIQLY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           I+  GG   AG+AIYDT++++KP ++T  +G+A ++G++LL+AG  G R ALP+AR++LH
Sbjct: 66  IHCEGGDPGAGLAIYDTLRYVKPAVATTVVGEAVAVGAVLLAAGAPGKRAALPHARVVLH 125

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP+    G   D+   A ++++I+  L  +  ++ G+  E +    D D I++A +A D+
Sbjct: 126 QPAAQGRGAIPDLILQADEVLRIRSDLESVLARHTGQPVERLRADTDHDRILTAVQARDY 185

Query: 199 GVVDKVLMSR 208
           G++D V+  R
Sbjct: 186 GLIDHVIAER 195


>gi|312140360|ref|YP_004007696.1| clp peptidase proteolytic subunit 2 clpp2 [Rhodococcus equi 103S]
 gi|325676030|ref|ZP_08155713.1| ATP-dependent Clp protease, protease subunit [Rhodococcus equi ATCC
           33707]
 gi|311889699|emb|CBH49016.1| Clp peptidase proteolytic subunit 2 ClpP2 [Rhodococcus equi 103S]
 gi|325553268|gb|EGD22947.1| ATP-dependent Clp protease, protease subunit [Rhodococcus equi ATCC
           33707]
          Length = 223

 Score =  171 bits (432), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 86/192 (44%), Positives = 134/192 (69%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +E ++ G +  + Y++L +ERI+F+  Q++D  A  + AQLL LE+ +P ++I++
Sbjct: 26  ILPSFIEHSSYGVKESNPYNKLFEERIIFLGVQVDDASANDVMAQLLVLESLDPDRDITM 85

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++  I+T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 86  YINSPGGSFTSLMAIYDTMQYVRADITTVCLGQAASAAAVLLAAGTPGKRLALPNARVLI 145

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP +GG  GQ SD+E  A +I +++R +     K+ GK  + + K  DRD I++A EA 
Sbjct: 146 HQPATGGIQGQVSDLEIQAAEIERMRRLMETTLGKHTGKDPDVIRKDTDRDKILTAEEAK 205

Query: 197 DWGVVDKVLMSR 208
           ++G++D VL  R
Sbjct: 206 EYGIIDDVLQYR 217


>gi|326771854|ref|ZP_08231139.1| Clp protease [Actinomyces viscosus C505]
 gi|326637987|gb|EGE38888.1| Clp protease [Actinomyces viscosus C505]
          Length = 224

 Score =  171 bits (432), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 91/192 (47%), Positives = 134/192 (69%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++RIVF+  Q++D  A  I AQLL LE+++P   I++
Sbjct: 24  VLPQFEERTAYGFKRQDPYAKLFEDRIVFMGVQVDDASADDIMAQLLVLESQDPDGLITM 83

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+IKP + T C+GQAAS  ++LL+AG +G R ALPNAR+L+
Sbjct: 84  YINSPGGSFTALTAIYDTMQYIKPQVQTVCLGQAASAAAVLLAAGSEGKRLALPNARVLI 143

Query: 138 HQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+  G  GQASDIE  A +I +++  L +    + G+  E++   L+RD I++A+ A 
Sbjct: 144 HQPAMEGMQGQASDIEIVANEIDRMRSWLEDTLAAHTGRDREKIHADLERDKILTAAAAK 203

Query: 197 DWGVVDKVLMSR 208
           ++G+VD+VL SR
Sbjct: 204 EYGIVDQVLTSR 215


>gi|225453100|ref|XP_002271649.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 320

 Score =  171 bits (432), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 78/172 (45%), Positives = 124/172 (72%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D  + LL++RIVF+  Q++D  A L+ +QLLFL+AE+ +K+I L+INSPGG VTAG+ IY
Sbjct: 81  DTTNMLLRQRIVFLGSQVDDMTADLVISQLLFLDAEDQEKDIKLFINSPGGSVTAGLGIY 140

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M+  K  +ST C+G AASMG+ LL++G KG RF +PN+R+++HQP G   G+A+++  
Sbjct: 141 DAMKLCKADVSTVCLGLAASMGAFLLASGSKGKRFCMPNSRVMIHQPLGTAGGKATEMGI 200

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
             ++++  K +LN+I  +  GK  +++E   DRD+ M+A EA ++G++D V+
Sbjct: 201 RIREMMYHKIKLNKILSRITGKPEQQIEADTDRDNFMNAWEAKEYGLIDAVI 252


>gi|115436866|ref|NP_001043155.1| Os01g0507900 [Oryza sativa Japonica Group]
 gi|113532686|dbj|BAF05069.1| Os01g0507900 [Oryza sativa Japonica Group]
 gi|215734851|dbj|BAG95573.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 314

 Score =  170 bits (431), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 81/172 (47%), Positives = 120/172 (69%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D  + LL++RIVF+   ++D  A LI +QLL L+AE+  K+I L+INSPGG +TAGM +Y
Sbjct: 77  DTTNMLLRQRIVFLGSPVDDMSADLIISQLLLLDAEDKTKDIKLFINSPGGSITAGMGVY 136

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M+F K  IST C G AASMG+ LL+AG KG RF +PNARI++HQPSGG  G+ +++  
Sbjct: 137 DAMKFCKADISTVCFGLAASMGAFLLAAGTKGKRFCMPNARIMIHQPSGGAGGKVTEMGL 196

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
             ++++  K ++N+I  +  GK  E++++    D+ MS  EA D+G+VD V+
Sbjct: 197 QIREMMYEKIKINKILSRITGKPEEQIDEDTKFDYFMSPWEAKDYGIVDSVI 248


>gi|297195743|ref|ZP_06913141.1| ATP-dependent Clp protease proteolytic subunit 5 [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297152927|gb|EFH32055.1| ATP-dependent Clp protease proteolytic subunit 5 [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 211

 Score =  170 bits (431), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 85/193 (44%), Positives = 126/193 (65%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P + E+T+ G R+ D YS+L+ ERIVF+   ++D  A  + AQ L LE E P ++I L
Sbjct: 9   VLPELTERTSFGTRTLDPYSKLMSERIVFLGTAVDDTAANDVIAQFLHLEYEAPDQDICL 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG ++A  AIYDTMQ +   ++T C+GQAAS    LL+AG  G R ALP ARI++
Sbjct: 69  YINSPGGSLSAMSAIYDTMQVVMCDVATTCLGQAASTAVALLTAGTPGKRMALPGARIVM 128

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
            QPS      GQ SD+E HA ++++++ +L    V++ G T E +   L+RD I  A+ A
Sbjct: 129 QQPSYEEPLRGQPSDLEIHAAELLRLREQLASTLVRHTGNTPERIAADLERDKIFDAAGA 188

Query: 196 CDWGVVDKVLMSR 208
            ++G++D V+ SR
Sbjct: 189 REYGLIDHVVTSR 201


>gi|271969827|ref|YP_003344023.1| endopeptidase Clp [Streptosporangium roseum DSM 43021]
 gi|270513002|gb|ACZ91280.1| Endopeptidase Clp [Streptosporangium roseum DSM 43021]
          Length = 196

 Score =  170 bits (431), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 77/190 (40%), Positives = 125/190 (65%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+ Q  RGER  D+YS LL ERIV++   I+  +A  + AQ +FLE+ENP   I  Y
Sbjct: 6   IPNVIAQNPRGERIMDVYSHLLTERIVYLGTAIDAGVANALVAQFIFLESENPDASIQFY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           IN  GG  +A +AIYDTM++I+P + T C+GQA ++G++LL+AG +G R ALP+AR++LH
Sbjct: 66  INCEGGDPSAMLAIYDTMRYIRPRVETTCVGQAIAVGAVLLAAGAEGKRAALPHARVILH 125

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP+    G   D+   A ++V+++  +  I  ++ G+T E +    D D + +A+ A ++
Sbjct: 126 QPAAQGRGTIPDLILQADEVVRVRADIERILSRHTGQTVETLRADTDHDRVFTATAALEY 185

Query: 199 GVVDKVLMSR 208
           G++D+++  R
Sbjct: 186 GLLDQIIEER 195


>gi|296118750|ref|ZP_06837326.1| Clp protease [Corynebacterium ammoniagenes DSM 20306]
 gi|295968239|gb|EFG81488.1| Clp protease [Corynebacterium ammoniagenes DSM 20306]
          Length = 207

 Score =  170 bits (431), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 86/192 (44%), Positives = 134/192 (69%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +EQ+ +G +  + YS+L +ERI+F+  Q++D  A  I AQLL LE  +P ++I++
Sbjct: 12  VLPSFIEQSAQGTKETNPYSKLFEERIIFLGTQVDDTSANDIMAQLLVLEGMDPDRDITM 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA MAIYDTM++++P + T C+GQAAS  ++LL+AG  G R ALPN+R+L+
Sbjct: 72  YINSPGGSFTALMAIYDTMRYVRPDVQTVCLGQAASAAAVLLAAGAPGKRAALPNSRVLI 131

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP + G  GQ SD+E  A +I +++R +     ++ G+T E+V    DRD I++A EA 
Sbjct: 132 HQPATQGTQGQVSDLEIQAAEIERMRRLMENTLAEHTGRTAEQVRIDTDRDKILTAEEAV 191

Query: 197 DWGVVDKVLMSR 208
           ++G++D+V   R
Sbjct: 192 EYGIIDQVFDYR 203


>gi|163840396|ref|YP_001624801.1| ATP-dependent endopeptidase Clp proteolytic subunit [Renibacterium
           salmoninarum ATCC 33209]
 gi|162953872|gb|ABY23387.1| ATP-dependent endopeptidase clp proteolytic subunit [Renibacterium
           salmoninarum ATCC 33209]
          Length = 211

 Score =  170 bits (431), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 83/168 (49%), Positives = 113/168 (67%)

Query: 38  RLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97
           RLL +RIV +  +++D +A  I AQLL L AE+P+ +ISLYINSPGG V+AGMAIYDTM 
Sbjct: 28  RLLHQRIVVLGTEVDDAVANRIVAQLLLLSAEDPRADISLYINSPGGSVSAGMAIYDTMM 87

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
            I   + T  MG AASMG +LL AG  G RF+LP++RIL+HQ S G  G  +D+E   Q+
Sbjct: 88  MIPNEVGTLAMGLAASMGQILLCAGAAGKRFSLPHSRILMHQGSAGIQGTTADVEIQEQN 147

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           +  I+  +N +   + G T  E+E+  DRDH  SA EA  +G+VD ++
Sbjct: 148 LRAIEDMVNGLLAHHTGHTIAEIERDSDRDHWFSAEEARQYGMVDHLV 195


>gi|256372514|ref|YP_003110338.1| Endopeptidase Clp [Acidimicrobium ferrooxidans DSM 10331]
 gi|256009098|gb|ACU54665.1| Endopeptidase Clp [Acidimicrobium ferrooxidans DSM 10331]
          Length = 211

 Score =  170 bits (431), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 84/197 (42%), Positives = 124/197 (62%), Gaps = 7/197 (3%)

Query: 19  VPMVVEQTNRG-------ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           +P +VE + R        E   D++ RLL+ERIVF+  ++    A  ICAQLL L AE+P
Sbjct: 3   LPALVEGSVRDLADAAGIEAGGDVFQRLLRERIVFLGTEVSQASANQICAQLLLLAAEDP 62

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +++IS  INSPGG +  G+A+YDTMQ++   +ST  +G AASM   LL AG  G R+ALP
Sbjct: 63  ERDISFIINSPGGSIYDGLAVYDTMQYVSCDVSTIAIGMAASMAQFLLCAGTHGKRYALP 122

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           +ARIL+HQP     GQA+DI   A+ I  +KR+L E    + G+  E ++   +RD   +
Sbjct: 123 HARILMHQPLAQMQGQAADIAIQAEQITYLKRQLAERIAFHTGQPLERIQADSERDRWFT 182

Query: 192 ASEACDWGVVDKVLMSR 208
           A EA ++G +D+V+ ++
Sbjct: 183 ADEALEYGFIDQVIRTK 199


>gi|56201842|dbj|BAD73292.1| putative ATP-dependent Clp protease, proteolytic subunit [Oryza
           sativa Japonica Group]
 gi|125526129|gb|EAY74243.1| hypothetical protein OsI_02123 [Oryza sativa Indica Group]
 gi|125570557|gb|EAZ12072.1| hypothetical protein OsJ_01953 [Oryza sativa Japonica Group]
          Length = 308

 Score =  170 bits (431), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 81/172 (47%), Positives = 120/172 (69%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D  + LL++RIVF+   ++D  A LI +QLL L+AE+  K+I L+INSPGG +TAGM +Y
Sbjct: 71  DTTNMLLRQRIVFLGSPVDDMSADLIISQLLLLDAEDKTKDIKLFINSPGGSITAGMGVY 130

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M+F K  IST C G AASMG+ LL+AG KG RF +PNARI++HQPSGG  G+ +++  
Sbjct: 131 DAMKFCKADISTVCFGLAASMGAFLLAAGTKGKRFCMPNARIMIHQPSGGAGGKVTEMGL 190

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
             ++++  K ++N+I  +  GK  E++++    D+ MS  EA D+G+VD V+
Sbjct: 191 QIREMMYEKIKINKILSRITGKPEEQIDEDTKFDYFMSPWEAKDYGIVDSVI 242


>gi|320094139|ref|ZP_08025952.1| ATP-dependent Clp protease proteolytic subunit [Actinomyces sp.
           oral taxon 178 str. F0338]
 gi|319978941|gb|EFW10471.1| ATP-dependent Clp protease proteolytic subunit [Actinomyces sp.
           oral taxon 178 str. F0338]
          Length = 214

 Score =  170 bits (431), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 92/207 (44%), Positives = 141/207 (68%), Gaps = 3/207 (1%)

Query: 3   FEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQ 62
           FE  A++  +  ++  +P   E+T  G R  + Y++L ++RIVF+  Q++D  A  + AQ
Sbjct: 7   FEAAARQMPQARYV--LPDFEERTAYGFRRQNPYTKLFEDRIVFLGVQVDDASADDVMAQ 64

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           LL LE+++P   I++YINSPGG  TA  AIYDTMQ+IKP I T C+GQAAS  ++LL+AG
Sbjct: 65  LLVLESQDPDSLITMYINSPGGSFTALTAIYDTMQYIKPQIQTVCLGQAASAAAVLLAAG 124

Query: 123 EKGMRFALPNARILLHQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVE 181
             G R ALPNAR+L+HQP+  G  GQASDI+  A +I +++  L +   ++ G   E+V 
Sbjct: 125 SPGKRLALPNARVLIHQPAMEGMQGQASDIQIVADEIDRMRAWLEDTLAEHSGTPVEQVR 184

Query: 182 KTLDRDHIMSASEACDWGVVDKVLMSR 208
           + ++RD I++A +A ++G++D+VL SR
Sbjct: 185 RDIERDKILTAPQAAEYGLIDQVLESR 211


>gi|182440084|ref|YP_001827803.1| putative ATP-dependent Clp protease [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178468600|dbj|BAG23120.1| putative ATP-dependent Clp protease [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 201

 Score =  170 bits (430), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 82/193 (42%), Positives = 125/193 (64%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G R+ D YS+LL ERIVF+   I+D  A+ + AQL++LE  +P + +SL
Sbjct: 9   VLPEFTERTATGTRTLDPYSKLLSERIVFLGSPIDDIAASDLIAQLMYLEHADPDRPLSL 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG   A  A+YDTM+F+   + TFC+GQA S  + LL+ G KG R ALP AR+++
Sbjct: 69  YINSPGGTFQAMAAVYDTMRFLTCEVETFCLGQAGSYAAALLAGGTKGRRHALPGARVVI 128

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
            QP+      GQ SD+E HA+++V+ +     + V++ G+T E++   ++RD I+ A  A
Sbjct: 129 QQPAMEEPMRGQPSDLEIHARELVRTREMFAAMLVRDTGRTAEQITADIERDTILDAEAA 188

Query: 196 CDWGVVDKVLMSR 208
              G+VD V+ +R
Sbjct: 189 LAHGLVDHVVANR 201


>gi|50954515|ref|YP_061803.1| ATP-dependent Clp protease proteolytic subunit [Leifsonia xyli
           subsp. xyli str. CTCB07]
 gi|67460474|sp|Q6AFZ7|CLPP2_LEIXX RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|50950997|gb|AAT88698.1| ATP-dependent Clp protease proteolytic subunit [Leifsonia xyli
           subsp. xyli str. CTCB07]
          Length = 223

 Score =  170 bits (430), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 91/193 (47%), Positives = 136/193 (70%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++RI+F+  Q++D  A  I AQLL LE+++P ++I +
Sbjct: 23  ILPSFEERTAYGYKRQDPYAKLFEDRIIFLGVQVDDASADDIMAQLLVLESQDPDRDIVM 82

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+++P I T  +GQAAS  ++L +AG  G R ALPNARIL+
Sbjct: 83  YINSPGGSFTAMTAIYDTMQYVRPQIQTVVLGQAASAAAVLTAAGAPGKRLALPNARILI 142

Query: 138 HQPSGGFS--GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+ G +  GQASDI   + +I +++  L E  VK+  +T E+V K ++RD+I+SA+EA
Sbjct: 143 HQPAVGEAGHGQASDILIQSNEINRMRAWLEETLVKHSSRTLEQVNKDIERDNILSATEA 202

Query: 196 CDWGVVDKVLMSR 208
             +G++D+VL SR
Sbjct: 203 LKYGLIDQVLTSR 215


>gi|326780753|ref|ZP_08240018.1| Endopeptidase Clp [Streptomyces cf. griseus XylebKG-1]
 gi|326661086|gb|EGE45932.1| Endopeptidase Clp [Streptomyces cf. griseus XylebKG-1]
          Length = 201

 Score =  170 bits (430), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 81/193 (41%), Positives = 125/193 (64%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G R+ D YS+LL ERI+F+   I+D  A+ + AQL++LE  +P + +SL
Sbjct: 9   VLPEFTERTATGTRTLDPYSKLLSERIIFLGSPIDDIAASDLIAQLMYLEHADPDRTLSL 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG   A  A+YDTM+F+   + TFC+GQA S  + LL+ G KG R ALP AR+++
Sbjct: 69  YINSPGGTFQAMAAVYDTMRFLTCEVETFCLGQAGSYATALLAGGTKGRRHALPGARVVI 128

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
            QP+      GQ SD+E HA+++V+ +     + V++ G+T E++   ++RD I+ A  A
Sbjct: 129 QQPAMEEPMRGQPSDLEIHARELVRTREMFAAMLVRDTGRTAEQITADIERDTILDAEAA 188

Query: 196 CDWGVVDKVLMSR 208
              G+VD V+ +R
Sbjct: 189 LAHGLVDHVVANR 201


>gi|213692575|ref|YP_002323161.1| Endopeptidase Clp [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213524036|gb|ACJ52783.1| Endopeptidase Clp [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|320458727|dbj|BAJ69348.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           longum subsp. infantis ATCC 15697]
          Length = 233

 Score =  170 bits (430), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 85/193 (44%), Positives = 139/193 (72%), Gaps = 3/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T  G ++ D YSRL ++RI+F+  Q++D  A  + AQLL LE+++P +++ +
Sbjct: 41  IMPQFVEKTPYGMKTQDAYSRLFEDRIIFLGVQVDDASADDVMAQLLVLESQDPNRDVMM 100

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL++G +G R  LPNAR+L+
Sbjct: 101 YINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLASGTEGKRLMLPNARVLI 160

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+   GF G+A++IE  A+++++++  L E   K+ G+  E++ + ++ D  ++A EA
Sbjct: 161 HQPAIDQGF-GKATEIEIQAKEMLRMREWLEETLAKHTGQDVEKIRRDIEVDTFLTAPEA 219

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD+VL  R
Sbjct: 220 KEYGIVDEVLEHR 232


>gi|296087193|emb|CBI33567.3| unnamed protein product [Vitis vinifera]
          Length = 185

 Score =  169 bits (429), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 77/167 (46%), Positives = 122/167 (73%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           LL++RIVF+  Q++D  A L+ +QLLFL+AE+ +K+I L+INSPGG VTAG+ IYD M+ 
Sbjct: 2   LLRQRIVFLGSQVDDMTADLVISQLLFLDAEDQEKDIKLFINSPGGSVTAGLGIYDAMKL 61

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
            K  +ST C+G AASMG+ LL++G KG RF +PN+R+++HQP G   G+A+++    +++
Sbjct: 62  CKADVSTVCLGLAASMGAFLLASGSKGKRFCMPNSRVMIHQPLGTAGGKATEMGIRIREM 121

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           +  K +LN+I  +  GK  +++E   DRD+ M+A EA ++G++D V+
Sbjct: 122 MYHKIKLNKILSRITGKPEQQIEADTDRDNFMNAWEAKEYGLIDAVI 168


>gi|226507940|ref|NP_001149210.1| ATP-dependent Clp protease proteolytic subunit 1 [Zea mays]
 gi|195625490|gb|ACG34575.1| ATP-dependent Clp protease proteolytic subunit 1 [Zea mays]
          Length = 285

 Score =  169 bits (429), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/172 (45%), Positives = 121/172 (70%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D  + LL++RIVF+   ++D  A LI +QLL L+AE+  K+I L+INSPGG +TAGM +Y
Sbjct: 73  DTTNMLLRQRIVFLGSPVDDTSADLIISQLLLLDAEDQTKDIKLFINSPGGSITAGMGVY 132

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M+F K  +ST C G AASMG+ LL+AG KG R+  PNARI++HQPSGG  G+ +++  
Sbjct: 133 DAMKFCKADVSTVCFGLAASMGAFLLAAGTKGKRYCXPNARIMIHQPSGGAGGKVTEMGL 192

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
             ++++  K ++N+I  +  GK+ E++++    D+ MS SEA D+G+VD ++
Sbjct: 193 QIREMMYEKIKINKIMSRITGKSEEQIDEDTKFDYFMSPSEAKDYGIVDNII 244


>gi|45657810|ref|YP_001896.1| ATP-dependent Clp protease-like, proteolytic subunit [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|161484953|ref|NP_712134.2| ATP-dependent protease ClpP [Leptospira interrogans serovar Lai
           str. 56601]
 gi|67460497|sp|Q72R01|CLPP2_LEPIC RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|45601050|gb|AAS70533.1| ATP-dependent CLP protease-like, proteolytic subunit [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|293385832|gb|AAN49152.2| ATP-dependent protease ClpP [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 197

 Score =  169 bits (429), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 80/178 (44%), Positives = 119/178 (66%), Gaps = 3/178 (1%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I    L  R +F+ G + D  +  +  +LL+LE ++P K+I+ YINSPGGVVT+GM ++D
Sbjct: 19  ISKNFLDHRKIFLWGPVTDESSKDLVGKLLYLEMKDPGKKITFYINSPGGVVTSGMTVFD 78

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS--GGFSGQASDIE 152
           T++ I  P+ T CMG AASMGS+LL+AG KG R   PN ++++HQPS  G     A+D++
Sbjct: 79  TIKMISSPVHTVCMGMAASMGSVLLAAGTKGERSIWPNGKVMIHQPSIGGQIVAPATDLK 138

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
            HA++I+K K +LN+I    CG    ++E+  DRD+ M A EA  +G+VDK L ++ID
Sbjct: 139 IHAEEILKTKTKLNQILADACGHPISKLEEDTDRDYYMDAEEAIKYGIVDK-LATKID 195


>gi|260780695|ref|YP_003227081.1| ATP-dependent Clp protease proteolytic subunit [Bryopsis hypnoides]
 gi|260176773|gb|ACX33782.1| ATP-dependent Clp protease proteolytic subunit [Bryopsis hypnoides]
          Length = 199

 Score =  169 bits (429), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 71/171 (41%), Positives = 120/171 (70%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+   ++D +A  +   +L+L AE   K++ +YINSPGG VT G+A+Y
Sbjct: 22  DLYNRLYRERVLFLCQDLDDELANQLIGIMLYLNAEEKAKDLYIYINSPGGSVTCGIAVY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M +IK  ++T C+G AASM S +L+ G +G R A P++RI++HQP GG  GQAS++  
Sbjct: 82  DIMNYIKSDVTTICVGTAASMASFILAGGCRGKRIAFPHSRIMIHQPEGGSQGQASEVLS 141

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            ++++++I+R++ +IY +  G+T   + + +DRD  +SA EA  +G+VD +
Sbjct: 142 ESEEVMRIRRQVGQIYAERTGQTLSRISRDMDRDQFLSAQEAKKYGLVDHL 192


>gi|255325481|ref|ZP_05366583.1| Clp protease [Corynebacterium tuberculostearicum SK141]
 gi|311741273|ref|ZP_07715097.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|255297419|gb|EET76734.1| Clp protease [Corynebacterium tuberculostearicum SK141]
 gi|311303443|gb|EFQ79522.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 207

 Score =  169 bits (429), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 84/192 (43%), Positives = 135/192 (70%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +EQ+ +G +  + YS+L +ERI+F+  Q++D  A  I AQLL LE+++P ++I++
Sbjct: 12  VLPSFIEQSAQGTKETNPYSKLFEERIIFLGTQVDDTSANDIMAQLLVLESQDPDRDITM 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA MAIYDTM++++P + T C+GQAAS  ++LL+AG  G R ALPN+R+L+
Sbjct: 72  YINSPGGSFTALMAIYDTMRYVRPDVQTVCLGQAASAAAVLLAAGAPGKRAALPNSRVLI 131

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP + G  GQ SD+E  A +I ++++ +     ++ G+T E++    DRD I++A EA 
Sbjct: 132 HQPATQGTQGQVSDLEIQAAEIERMRKLMETTLSEHTGRTAEQIRIDTDRDKILTAQEAV 191

Query: 197 DWGVVDKVLMSR 208
           ++G++D V   R
Sbjct: 192 EYGIIDTVFDYR 203


>gi|116328441|ref|YP_798161.1| protease subunit of an ATP-dependent Clp protease [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116331169|ref|YP_800887.1| protease subunit of an ATP-dependent Clp protease [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|116121185|gb|ABJ79228.1| Protease subunit of an ATP-dependent Clp protease [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116124858|gb|ABJ76129.1| Protease subunit of an ATP-dependent Clp protease [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 197

 Score =  169 bits (429), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/178 (44%), Positives = 120/178 (67%), Gaps = 3/178 (1%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I  + L  R +F+ G + D  +  +  +LL+LE ++P K I+ YINSPGGVVT+GM ++D
Sbjct: 19  ISKKFLDHRKIFLWGPVTDESSKDLVGKLLYLEMKDPGKPITFYINSPGGVVTSGMTVFD 78

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS--GGFSGQASDIE 152
           T++ I  P+ T CMG AASMGS+LL+AG KG R   PN ++++HQPS  G     A+D++
Sbjct: 79  TIKMISSPVHTVCMGMAASMGSVLLAAGTKGERSIWPNGKVMIHQPSIGGQIVAPATDLK 138

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
            HA++I+K K +LN+I    CG+   ++E+  DRD+ M A EA  +G+V+K L ++ID
Sbjct: 139 IHAEEILKTKAKLNQILADACGQPVSKIEEDTDRDYYMDAEEAIQYGIVNK-LATKID 195


>gi|19553609|ref|NP_601611.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           glutamicum ATCC 13032]
 gi|62391253|ref|YP_226655.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           glutamicum ATCC 13032]
 gi|145296393|ref|YP_001139214.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           glutamicum R]
 gi|25008292|sp|Q8NN02|CLPP1_CORGL RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|21325182|dbj|BAB99804.1| Protease subunit of ATP-dependent Clp proteases [Corynebacterium
           glutamicum ATCC 13032]
 gi|41326593|emb|CAF21075.1| ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT CLPP2
           [Corynebacterium glutamicum ATCC 13032]
 gi|140846313|dbj|BAF55312.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 208

 Score =  169 bits (429), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 87/192 (45%), Positives = 132/192 (68%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +EQ+  G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE  +P ++I+L
Sbjct: 13  VLPSFIEQSAYGTKETNPYAKLFEERIIFLGTQVDDTSANDIMAQLLVLEGMDPDRDITL 72

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA MAIYDTMQ+++P + T C+GQAAS  ++LL+AG  G R  LPN+R+L+
Sbjct: 73  YINSPGGSFTALMAIYDTMQYVRPDVQTVCLGQAASAAAVLLAAGAPGKRAVLPNSRVLI 132

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP + G  GQ SD+E  A +I +++R +     ++ GKT E++    DRD I++A EA 
Sbjct: 133 HQPATQGTQGQVSDLEIQAAEIERMRRLMETTLAEHTGKTAEQIRIDTDRDKILTAEEAL 192

Query: 197 DWGVVDKVLMSR 208
           ++G+VD+V   R
Sbjct: 193 EYGIVDQVFDYR 204


>gi|320534809|ref|ZP_08035228.1| Clp protease [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320132988|gb|EFW25517.1| Clp protease [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 224

 Score =  169 bits (428), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 90/192 (46%), Positives = 134/192 (69%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++RIVF+  Q++D  A  I AQLL LE+++P   I++
Sbjct: 24  VLPQFEERTAYGFKRQDPYAKLFEDRIVFMGVQVDDASADDIMAQLLVLESQDPDGLITM 83

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+IKP + T C+GQAAS  ++LL+AG +G R ALPNAR+L+
Sbjct: 84  YINSPGGSFTALTAIYDTMQYIKPQVQTVCLGQAASAAAVLLAAGSEGKRLALPNARVLI 143

Query: 138 HQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+  G  GQASDIE  A ++ +++  L +    + G+  E++   L+RD I++A+ A 
Sbjct: 144 HQPAMEGMQGQASDIEIVANEMDRMRSWLEDTLAAHTGQDREKIHADLERDKILTAAAAK 203

Query: 197 DWGVVDKVLMSR 208
           ++G+VD+VL SR
Sbjct: 204 EYGIVDQVLTSR 215


>gi|308177634|ref|YP_003917040.1| ATP-dependent Clp protease proteolytic subunit ClpP [Arthrobacter
           arilaitensis Re117]
 gi|307745097|emb|CBT76069.1| ATP-dependent Clp protease proteolytic subunit ClpP [Arthrobacter
           arilaitensis Re117]
          Length = 219

 Score =  169 bits (428), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 86/193 (44%), Positives = 135/193 (69%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++RI+F+  Q++D  A  + AQLL LE+ +P+++++L
Sbjct: 18  ILPQFEERTPYGFKRQDPYAKLFEDRIIFLGAQVDDASADDVMAQLLVLESMDPERDVTL 77

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDT+QFI+P + T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 78  YINSPGGSFTAMTAIYDTIQFIRPEVQTVCLGQAASAAAVLLAAGTPGKRLALPNARVLI 137

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+  GG  G A+D++  A+++++++  L E    + G+  E+V   ++RD  M+ASEA
Sbjct: 138 HQPAMGGGERGTATDLQIQAEEVMRMRSWLEETIASHSGQDVEKVRDDVERDLFMTASEA 197

Query: 196 CDWGVVDKVLMSR 208
             +G+VD+VL  R
Sbjct: 198 KVYGIVDEVLTPR 210


>gi|291298893|ref|YP_003510171.1| endopeptidase Clp [Stackebrandtia nassauensis DSM 44728]
 gi|290568113|gb|ADD41078.1| Endopeptidase Clp [Stackebrandtia nassauensis DSM 44728]
          Length = 210

 Score =  169 bits (428), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 83/192 (43%), Positives = 139/192 (72%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP   E+T+ G +  + Y++L + R +F+   ++D  A  I +QLL LE ++P+++I +
Sbjct: 10  IVPSYTEKTSYGVKEMNPYNKLFENRTIFLGSPVDDTSANDIMSQLLVLEGDDPERDIEM 69

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA MAIYDTMQ+++P I T CMGQAAS  ++LL+AG KG R ALPN+R+++
Sbjct: 70  YINSPGGSLTALMAIYDTMQYVRPDIRTVCMGQAASAAAILLAAGAKGKRLALPNSRVII 129

Query: 138 HQPSG-GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+  G  GQASD+E  A++I++++ ++ ++  ++ G+  ++V + ++RD I++A EA 
Sbjct: 130 HQPATEGTYGQASDMEIQAREIMRMRDQMEKVLARHTGQELDKVRRDIERDKILNADEAK 189

Query: 197 DWGVVDKVLMSR 208
           ++G+VD V+  R
Sbjct: 190 EYGIVDTVMEYR 201


>gi|257055263|ref|YP_003133095.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Saccharomonospora viridis DSM 43017]
 gi|256585135|gb|ACU96268.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Saccharomonospora viridis DSM 43017]
          Length = 209

 Score =  169 bits (428), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 87/192 (45%), Positives = 133/192 (69%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T+ G +  + Y++L +ER + +  Q++D  A  + AQLL LE E+P ++I+L
Sbjct: 12  ILPSYVERTSYGVKESNPYNKLYEERQIMLGVQVDDASANDVMAQLLHLEHEDPDRDITL 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA MAIYDTMQ+++P I T C+GQAAS  ++LL+AG KG R ALPN+R+L+
Sbjct: 72  YINSPGGSFTAMMAIYDTMQYVRPDIQTVCLGQAASAAAVLLAAGTKGKRLALPNSRVLI 131

Query: 138 HQPSG-GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+  G  GQ SD+E  A +I +++R +     K+  K+ +EV   ++RD I++  EA 
Sbjct: 132 HQPATEGAYGQVSDLEIQAAEIQRVRRLMETTLAKHTNKSADEVRVDIERDKILTPEEAK 191

Query: 197 DWGVVDKVLMSR 208
           ++G++D VL  R
Sbjct: 192 EYGIIDHVLEYR 203


>gi|322700293|gb|EFY92049.1| ATP-dependent Clp protease proteolytic subunit 1 [Metarhizium
           acridum CQMa 102]
          Length = 174

 Score =  169 bits (428), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 85/166 (51%), Positives = 115/166 (69%), Gaps = 7/166 (4%)

Query: 55  MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASM 114
           M+  I AQLL+LE++ P+K I++YINSPGG VT+GMAIYDTM +IK P+ST C+G AASM
Sbjct: 1   MSASIVAQLLWLESDTPEKPITMYINSPGGSVTSGMAIYDTMTYIKSPVSTVCVGGAASM 60

Query: 115 GSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEI--YVKN 172
            ++LL+ GE G RFALP++ I++HQP GG  GQASDI  +A  I +I+ + N+I  Y  N
Sbjct: 61  AAILLAGGEAGKRFALPHSSIMIHQPLGGTRGQASDILIYANQIQRIREQSNKIMQYHLN 120

Query: 173 CGK-----TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
             K     + EEV   ++RD  +S  EA D GV+D +L  R D +E
Sbjct: 121 KAKGTDKYSLEEVNDMMERDKYLSVDEALDLGVIDGILTKRTDKKE 166


>gi|242053033|ref|XP_002455662.1| hypothetical protein SORBIDRAFT_03g018270 [Sorghum bicolor]
 gi|241927637|gb|EES00782.1| hypothetical protein SORBIDRAFT_03g018270 [Sorghum bicolor]
          Length = 313

 Score =  169 bits (428), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 78/172 (45%), Positives = 121/172 (70%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D  + LL++RIVF+   ++D  A LI +QLL L+AE+  K+I L+INSPGG +TAGM +Y
Sbjct: 76  DTSNMLLRQRIVFLGSSVDDTSADLIISQLLLLDAEDQTKDIKLFINSPGGSITAGMGVY 135

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M+F K  +ST C G AASMG+ LL+AG KG R+ +PNARI++HQPSGG  G+ +++  
Sbjct: 136 DAMKFCKADVSTVCFGLAASMGAFLLAAGTKGKRYCMPNARIMIHQPSGGAGGKVTEMGL 195

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
             ++++  K ++N+I  +  GK+ E++++    D+ MS  EA D+G+VD ++
Sbjct: 196 QIREMMYEKIKINKIMSRITGKSKEQIDEDTKFDYFMSPWEAKDYGIVDSII 247


>gi|322690866|ref|YP_004220436.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           longum subsp. longum JCM 1217]
 gi|320455722|dbj|BAJ66344.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           longum subsp. longum JCM 1217]
          Length = 233

 Score =  169 bits (428), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 85/193 (44%), Positives = 138/193 (71%), Gaps = 3/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T  G ++ D YSRL ++RI+F+  Q++D  A  + AQLL LE+++P +++ +
Sbjct: 41  IMPQFVEKTPYGMKTQDAYSRLFEDRIIFLGVQVDDASADDVMAQLLVLESQDPNRDVMM 100

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG + A  AIYDTMQ+IKP + T C+GQAAS  ++LL++G KG R  LPNAR+L+
Sbjct: 101 YINSPGGSMMAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLASGTKGKRLMLPNARVLI 160

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+   GF G+A++IE  A+++++++  L E   K+ G+  E++ + ++ D  ++A EA
Sbjct: 161 HQPAIDQGF-GKATEIEIQAKEMLRMREWLEETLAKHTGQDVEKIRRDIEVDTFLTAPEA 219

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD+VL  R
Sbjct: 220 KEYGIVDEVLEHR 232


>gi|158311882|ref|YP_001504390.1| endopeptidase Clp [Frankia sp. EAN1pec]
 gi|158107287|gb|ABW09484.1| Endopeptidase Clp [Frankia sp. EAN1pec]
          Length = 205

 Score =  169 bits (427), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 78/160 (48%), Positives = 110/160 (68%)

Query: 46  FVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIST 105
           FV   ++D +A  +CAQLL L   + +++ISLYINSPGG V AGMAIYDTMQFI+  ++T
Sbjct: 34  FVGAAVDDALANRVCAQLLLLAQASRRQDISLYINSPGGSVDAGMAIYDTMQFIENDVAT 93

Query: 106 FCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRL 165
           + +G AASMG  LL+AG  G RFALPN+RI++HQP GG  G ASDI   A+  +  +RR+
Sbjct: 94  YALGLAASMGQFLLTAGTAGKRFALPNSRIMMHQPHGGVGGTASDIAIQAEQALHTRRRM 153

Query: 166 NEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            E+  ++ G +  E+    DRD   +A+ A ++G+VD V+
Sbjct: 154 QELIAEHSGHSVAEIAADSDRDRWFTAAAAKEYGLVDAVV 193


>gi|149010631|ref|ZP_01832002.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae SP19-BS75]
 gi|149013224|ref|ZP_01834010.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae SP19-BS75]
 gi|147762975|gb|EDK69920.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae SP19-BS75]
 gi|147765112|gb|EDK72041.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae SP19-BS75]
          Length = 147

 Score =  169 bits (427), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 74/123 (60%), Positives = 100/123 (81%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMI 120

Query: 138 HQP 140
           HQP
Sbjct: 121 HQP 123


>gi|297846120|ref|XP_002890941.1| hypothetical protein ARALYDRAFT_890716 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297336783|gb|EFH67200.1| hypothetical protein ARALYDRAFT_890716 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 228

 Score =  169 bits (427), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 81/182 (44%), Positives = 122/182 (67%), Gaps = 1/182 (0%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           E   RG  S D+   LL+ERIVF+   I+D +A  I +QLL L+A++P+K+I L+INSPG
Sbjct: 6   ESAIRGAES-DVMGLLLRERIVFLGSSIDDFVADAIMSQLLLLDAKDPKKDIKLFINSPG 64

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           G ++A MAIYD +Q ++  +ST  +G  AS  S++L AG KG RFA+PN RI++HQP GG
Sbjct: 65  GSLSATMAIYDVVQLVRADVSTIALGIVASTASIILGAGTKGKRFAMPNTRIMIHQPLGG 124

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            S QA D+E  A++++  K  +  I      +++E+V K +DR+  MS  EA ++G++D 
Sbjct: 125 ASDQAIDVEIQAKEVMHNKNNVTSIIAGCTSRSFEQVLKDIDRNRYMSPIEAVEYGLIDG 184

Query: 204 VL 205
           V+
Sbjct: 185 VI 186


>gi|326330021|ref|ZP_08196335.1| Clp protease [Nocardioidaceae bacterium Broad-1]
 gi|325952229|gb|EGD44255.1| Clp protease [Nocardioidaceae bacterium Broad-1]
          Length = 210

 Score =  168 bits (426), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 80/171 (46%), Positives = 115/171 (67%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           + +RL  +RI+ +  +++D +A  ICAQLL L AE+P ++ISLYINSPGG VTAGMAIYD
Sbjct: 15  LTARLQNQRIIVLGQEVDDAIANRICAQLLLLSAEDPHRDISLYINSPGGSVTAGMAIYD 74

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            M  I   +ST  MG AASMG  LL+AG  G R+ LP+  +LLH+ S G  G A+DIE  
Sbjct: 75  VMHLIPNDVSTLGMGMAASMGQFLLTAGTPGKRYVLPHTEVLLHKGSAGIGGSAADIEVQ 134

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A  + ++ +++ EI   + G++ E++++   RD   +A EA D+G VD+VL
Sbjct: 135 AARLARMTQQMLEITAAHTGQSVEQIDQDSLRDRWFTAEEARDYGFVDEVL 185


>gi|255081202|ref|XP_002507823.1| predicted protein [Micromonas sp. RCC299]
 gi|226523099|gb|ACO69081.1| predicted protein [Micromonas sp. RCC299]
          Length = 174

 Score =  168 bits (426), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 79/170 (46%), Positives = 115/170 (67%)

Query: 36  YSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDT 95
           Y++LL +R +F+ G+++D  A  +  ++LFL+A +P K I +YINS GGVVT+G+AIYD 
Sbjct: 2   YAQLLTQRRIFLNGRVDDKSAHTLVGKMLFLDAADPTKPIVMYINSGGGVVTSGLAIYDV 61

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           MQ ++PP+ T C+G A SM ++LL AGEKG R+ALPN+RI++HQP    SGQ +DI   A
Sbjct: 62  MQHVRPPVYTVCLGHAESMAAVLLCAGEKGHRYALPNSRIMIHQPHHVVSGQTTDIIIKA 121

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           +     +  L+ I   + GK   EV   L+RD  M+ASEA  +G+VD  +
Sbjct: 122 KKAEHTRETLSAIIQAHSGKGEGEVNAALERDTYMTASEAKKFGIVDHTV 171


>gi|225021669|ref|ZP_03710861.1| hypothetical protein CORMATOL_01697 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305680976|ref|ZP_07403783.1| endopeptidase Clp [Corynebacterium matruchotii ATCC 14266]
 gi|224945660|gb|EEG26869.1| hypothetical protein CORMATOL_01697 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305659181|gb|EFM48681.1| endopeptidase Clp [Corynebacterium matruchotii ATCC 14266]
          Length = 212

 Score =  168 bits (426), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 84/192 (43%), Positives = 134/192 (69%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +EQ+  G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE  +P ++I++
Sbjct: 17  VLPSFIEQSAYGTKETNPYAKLFEERIIFLGTQVDDTSANDIMAQLLVLEGLDPDRDITM 76

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++P + T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 77  YINSPGGSFTSLMAIYDTMQYVRPDVRTVCLGQAASAAAVLLAAGAPGKRAALPNARVLI 136

Query: 138 HQPSG-GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+  G  GQ SD+E  A +I +++  + E   ++ G++ E++ +  DRD I++A EA 
Sbjct: 137 HQPATEGARGQVSDLEIQAAEIQRMRTLMEETLARHTGRSAEQISEDTDRDKILTAQEAL 196

Query: 197 DWGVVDKVLMSR 208
           ++G++D+V   R
Sbjct: 197 EYGIIDQVFDYR 208


>gi|229821078|ref|YP_002882604.1| Endopeptidase Clp [Beutenbergia cavernae DSM 12333]
 gi|229566991|gb|ACQ80842.1| Endopeptidase Clp [Beutenbergia cavernae DSM 12333]
          Length = 223

 Score =  168 bits (426), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 89/193 (46%), Positives = 132/193 (68%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++RI+F+  QI+D  A  + AQLL LE+++P   I++
Sbjct: 23  VLPQFEERTAYGFKRQDPYTKLFEDRIIFLGVQIDDASADDVMAQLLVLESQDPDGLITM 82

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+I P I T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 83  YINSPGGSFTALTAIYDTMQYIAPQIQTVCLGQAASAAAVLLAAGTPGKRLALPNARVLI 142

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+  GG   QASDIE  A ++++++  L      +  K+ +EV   ++RD I++A+ A
Sbjct: 143 HQPALEGGTYAQASDIEIQANEVLRMREWLESTIAAHTSKSVDEVRADIERDKILTAAGA 202

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD+VL SR
Sbjct: 203 LEYGIVDQVLESR 215


>gi|108800543|ref|YP_640740.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium sp.
           MCS]
 gi|119869682|ref|YP_939634.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium sp.
           KMS]
 gi|126436159|ref|YP_001071850.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium sp.
           JLS]
 gi|108770962|gb|ABG09684.1| ATP-dependent Clp protease proteolytic subunit ClpP [Mycobacterium
           sp. MCS]
 gi|119695771|gb|ABL92844.1| ATP-dependent Clp protease proteolytic subunit ClpP / ClpP2
           peptidase, Serine peptidase, MEROPS family S14
           [Mycobacterium sp. KMS]
 gi|126235959|gb|ABN99359.1| ATP-dependent Clp protease proteolytic subunit ClpP [Mycobacterium
           sp. JLS]
          Length = 215

 Score =  168 bits (425), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 88/193 (45%), Positives = 132/193 (68%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +E ++ G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE+ +P ++I++
Sbjct: 16  ILPSFIEHSSFGVKESNPYNKLFEERIIFLGVQVDDASANDIMAQLLVLESLDPDRDITM 75

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++  I T C+GQAAS  ++LL+AG  G R ALPNARIL+
Sbjct: 76  YINSPGGSFTSLMAIYDTMQYVRADIQTVCLGQAASAAAVLLAAGTPGKRLALPNARILI 135

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SG   GQ SD+E  A++I +++  +     ++ GK  E + K  DRD I++A EA
Sbjct: 136 HQPALSGVIQGQFSDLEIQAKEIERMRTLMEVTLARHTGKDPETIRKDTDRDKILTAEEA 195

Query: 196 CDWGVVDKVLMSR 208
            D+G++D VL  R
Sbjct: 196 KDYGIIDTVLEYR 208


>gi|227503045|ref|ZP_03933094.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           accolens ATCC 49725]
 gi|306836722|ref|ZP_07469685.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           accolens ATCC 49726]
 gi|227076106|gb|EEI14069.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           accolens ATCC 49725]
 gi|304567400|gb|EFM43002.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           accolens ATCC 49726]
          Length = 207

 Score =  168 bits (425), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 83/192 (43%), Positives = 134/192 (69%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +EQ+ +G +  + YS+L +ERI+F+  Q++D  A  I AQLL LE+++P ++I++
Sbjct: 12  VLPSFIEQSAQGTKETNPYSKLFEERIIFLGTQVDDTSANDIMAQLLVLESQDPDRDITM 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA MAIYDTM++++P + T C+GQAAS  ++LL+AG  G R ALPN+R+L+
Sbjct: 72  YINSPGGSFTALMAIYDTMRYVRPDVQTVCLGQAASAAAVLLAAGAPGKRAALPNSRVLI 131

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP + G  GQ SD+E  A +I +++  +     ++ G+T E++    DRD I++A +A 
Sbjct: 132 HQPATQGTQGQVSDLEIQAAEIERMRTLMENTLAEHTGRTAEQIRIDTDRDKILTAEDAV 191

Query: 197 DWGVVDKVLMSR 208
           ++G++D V   R
Sbjct: 192 EYGIIDTVFEYR 203


>gi|118482644|gb|ABK93241.1| unknown [Populus trichocarpa]
          Length = 297

 Score =  167 bits (424), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 81/186 (43%), Positives = 121/186 (65%), Gaps = 1/186 (0%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P     + RG  + D    LL+ERIVF+   I+D +A  I +QLL L+A++P K+I L++
Sbjct: 71  PQTPATSMRGAET-DAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFV 129

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           N PGG ++A MAIYD +Q ++  +ST  +G +AS  S++L  G KG RFA+PN RI++HQ
Sbjct: 130 NCPGGSLSASMAIYDVVQLVRADVSTIALGISASTASIILGGGTKGKRFAMPNTRIMIHQ 189

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG SGQA D+E  A++I+  K  +  I      +T E+V+K +DRD  MS  EA ++G
Sbjct: 190 PLGGASGQAIDVEIQAREIMHNKNNIIRIVSGFTSRTVEQVQKDMDRDRYMSPIEAVEYG 249

Query: 200 VVDKVL 205
           ++D V+
Sbjct: 250 IIDGVI 255


>gi|148272645|ref|YP_001222206.1| ATP-dependent Clp protease proteolytic subunit [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|170781894|ref|YP_001710226.1| ATP-dependent Clp protease proteolytic subunit [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|147830575|emb|CAN01510.1| ATP-dependent protease, proteolytic subunit [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|169156462|emb|CAQ01610.1| ATP dependent Clp protease proteolytic subunit 2 [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 226

 Score =  167 bits (423), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 86/193 (44%), Positives = 133/193 (68%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++RI+F+  Q++D  A  + AQLL LE+ +P ++I +
Sbjct: 24  ILPSFEERTAYGYKRQDPYAKLFEDRIIFLGVQVDDASADDVMAQLLVLESMDPDRDIVM 83

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ++ P I T C+GQAAS  ++LL+ G  G R ALPNAR+L+
Sbjct: 84  YINSPGGSFTAMTAIYDTMQYVSPQIQTVCLGQAASAAAVLLAGGAPGKRLALPNARVLI 143

Query: 138 HQPSGGFS--GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+ G S  GQASDIE  A +I++++  L +   K+  +  +++ + ++RD I+ A EA
Sbjct: 144 HQPATGESSGGQASDIEIQAAEIMRMRSWLEDTLAKHTNRDRDQINRDIERDKILGADEA 203

Query: 196 CDWGVVDKVLMSR 208
            ++G++D+VL SR
Sbjct: 204 LEYGLIDQVLTSR 216


>gi|258652073|ref|YP_003201229.1| endopeptidase Clp [Nakamurella multipartita DSM 44233]
 gi|258555298|gb|ACV78240.1| Endopeptidase Clp [Nakamurella multipartita DSM 44233]
          Length = 229

 Score =  167 bits (423), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 92/194 (47%), Positives = 125/194 (64%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E +  GLV  ++        S  +  RLL+ERI+ +  ++ D  A  + AQLL L AE+P
Sbjct: 19  EAIAPGLVDPMMRAGTPMSLSDSVSERLLRERIILLGSEVRDTNANELTAQLLLLAAEDP 78

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +++I+LYINSPGG VTAGMAIYDTM +I+P ++T  MG AASMG  LL+AG KG R ALP
Sbjct: 79  ERDITLYINSPGGSVTAGMAIYDTMMWIEPDVATTAMGLAASMGQFLLTAGAKGKRAALP 138

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           + RIL+HQPS G  G A+DI   A  + K KR L E+   + G+  E +E   DRD   +
Sbjct: 139 HTRILMHQPSAGVGGTAADIAIQADMLTKSKRELTELQSLHTGQPIERIEVDQDRDRWFT 198

Query: 192 ASEACDWGVVDKVL 205
           A EA ++G +DKV+
Sbjct: 199 AQEALEYGFIDKVV 212


>gi|224074500|ref|XP_002304381.1| predicted protein [Populus trichocarpa]
 gi|222841813|gb|EEE79360.1| predicted protein [Populus trichocarpa]
          Length = 220

 Score =  167 bits (423), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 78/172 (45%), Positives = 116/172 (67%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D    LL+ERIVF+   I+D +A  I +QLL L+A++P K+I L++N PGG ++A MAIY
Sbjct: 7   DAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNCPGGSLSASMAIY 66

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D +Q ++  +ST  +G +AS  S++L  G KG RFA+PN RI++HQP GG SGQA D+E 
Sbjct: 67  DVVQLVRADVSTIALGISASTASIILGGGTKGKRFAMPNTRIMIHQPLGGASGQAIDVEI 126

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            A++I+  K  +  I      +T E+V+K +DRD  MS  EA ++G++D V+
Sbjct: 127 QAREIMHNKNNIIRIVSGFTSRTVEQVQKDMDRDRYMSPIEAVEYGIIDGVI 178


>gi|297162278|gb|ADI11990.1| ATP-dependent Clp protease, protease subunit [Streptomyces
           bingchenggensis BCW-1]
          Length = 211

 Score =  167 bits (423), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 87/193 (45%), Positives = 130/193 (67%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T+ G R+ D YS+LL ERIVF+  Q++D  A  + AQL+ LE  +P ++ISL
Sbjct: 9   VLPEFTERTSNGVRTMDPYSKLLSERIVFLGTQVDDTSANDVIAQLVHLEHASPDQDISL 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  +A  AIYDTM F+   + T C+GQAAS  ++LL+AG  G RFALP AR+L+
Sbjct: 69  YINSPGGSFSAMTAIYDTMHFVTCDVETICLGQAASAAAVLLAAGTPGKRFALPGARVLI 128

Query: 138 HQPSGG--FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQPS      G  SD+E  A+++++ +  L E+ V++ G+T E +   ++RD I +A +A
Sbjct: 129 HQPSFSEPIQGTTSDLELQAKEMLRTRALLEELLVRHTGQTAERIRSDIERDKIFNAEDA 188

Query: 196 CDWGVVDKVLMSR 208
             +G+VD++  SR
Sbjct: 189 VSYGLVDRLTQSR 201


>gi|225155839|ref|ZP_03724325.1| Endopeptidase Clp [Opitutaceae bacterium TAV2]
 gi|224803389|gb|EEG21626.1| Endopeptidase Clp [Opitutaceae bacterium TAV2]
          Length = 218

 Score =  167 bits (423), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 82/173 (47%), Positives = 113/173 (65%), Gaps = 2/173 (1%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I  + L++R +F+ G + D  A  I  +LL+LEA  P K+I+ YINSPGG +TAGMAIYD
Sbjct: 43  IQKKFLEQRKIFLWGAVTDESAKDITERLLYLEAIAPGKDITFYINSPGGSITAGMAIYD 102

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP--SGGFSGQASDIE 152
           TMQ I  PI+    G AASMGS+LLS   KG RF  P++R+L+HQP  SG F G A+DI 
Sbjct: 103 TMQLISSPITVVVTGMAASMGSILLSGAPKGRRFLYPHSRVLIHQPLISGRFIGPATDIN 162

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
             AQ++ K++  LN+I     G+  E + K  DRD  ++A EA  +G+ DK++
Sbjct: 163 IQAQEMEKLRAELNQILANASGQPIERINKDTDRDFYLNAQEAIAYGLADKII 215


>gi|294786960|ref|ZP_06752214.1| Clp protease [Parascardovia denticolens F0305]
 gi|315226599|ref|ZP_07868387.1| ATP-dependent Clp protease proteolytic subunit [Parascardovia
           denticolens DSM 10105]
 gi|294485793|gb|EFG33427.1| Clp protease [Parascardovia denticolens F0305]
 gi|315120731|gb|EFT83863.1| ATP-dependent Clp protease proteolytic subunit [Parascardovia
           denticolens DSM 10105]
          Length = 223

 Score =  167 bits (423), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 86/192 (44%), Positives = 136/192 (70%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T+ G +  D YS+L ++RI+F+  Q++D  A  I AQLL LE+++P +++ L
Sbjct: 31  VMPQFEERTSFGFKRSDPYSKLFEDRIIFMGVQVDDTSADDIMAQLLVLESQDPDRDVVL 90

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL+AG KG R  LPNAR+L+
Sbjct: 91  YINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLAAGTKGKRLMLPNARVLI 150

Query: 138 HQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+ G   G+A++IE  A+++++++  L E   K+ G+  + + K ++ D I++A +A 
Sbjct: 151 HQPAMGQDFGKATEIEIQAKELLRMREWLEETLAKHTGQEVDRIRKDIETDTILTAQQAL 210

Query: 197 DWGVVDKVLMSR 208
           ++G+VD VL  R
Sbjct: 211 EYGMVDAVLEHR 222


>gi|300741667|ref|ZP_07071688.1| Clp protease [Rothia dentocariosa M567]
 gi|300380852|gb|EFJ77414.1| Clp protease [Rothia dentocariosa M567]
          Length = 212

 Score =  167 bits (422), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 86/170 (50%), Positives = 115/170 (67%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y+RLLKERI+++  ++ D  A LIC+Q+L L AE+P+ +I LYINSPGG VTAG+AIYD
Sbjct: 30  VYNRLLKERIIWLGSEVRDSNANLICSQMLVLSAEDPKADIYLYINSPGGSVTAGLAIYD 89

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ I   + T   G AASMG LLL+AG  G R+A PNARIL+HQP GG  G  SDI   
Sbjct: 90  TMQLIPNDVVTVATGMAASMGQLLLTAGAPGKRYATPNARILMHQPLGGIGGSGSDIRTQ 149

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            Q  +  KRRL EI  +  GK+ +++ +  DRD+  +A E  ++G  D +
Sbjct: 150 VQLTLDFKRRLAEITAERTGKSVDQIIEDSDRDNWFTAEEGLEYGFFDHI 199


>gi|156084894|ref|XP_001609930.1| ATP-dependent Clp protease proteolytic subunit 1 [Babesia bovis
           T2Bo]
 gi|154797182|gb|EDO06362.1| ATP-dependent Clp protease proteolytic subunit 1, putative [Babesia
           bovis]
          Length = 225

 Score =  167 bits (422), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 79/197 (40%), Positives = 126/197 (63%), Gaps = 8/197 (4%)

Query: 20  PMVVEQTNRGERSYDIYSRLL--------KERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           P ++ Q N   + Y   S  L        + R +F++G++ D  +  +  Q+  +  ENP
Sbjct: 16  PKILIQANNDAKDYKSNSDYLAKVDEFHIRTRTLFLSGELNDEKSYRLINQIFRMNEENP 75

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            + I  YINSPGG V+AG+AIYD +Q +K  + T C+GQAASMG+ LL+AG KG+R A+P
Sbjct: 76  NENIKFYINSPGGSVSAGLAIYDILQSLKMRVETICIGQAASMGAFLLAAGAKGLRSAMP 135

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+RI++HQP GG  G+ +DI+  A +I+ I++ LN  +    GK+ E+VE+  +RD+ M 
Sbjct: 136 NSRIMIHQPLGGAHGEVTDIKIQANEILHIRQILNAHFSHFTGKSIEQVEQDCERDYYMR 195

Query: 192 ASEACDWGVVDKVLMSR 208
            SEA ++G++D++  +R
Sbjct: 196 PSEAMEYGLIDRICTTR 212


>gi|297197433|ref|ZP_06914830.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sviceus ATCC 29083]
 gi|197716281|gb|EDY60315.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sviceus ATCC 29083]
          Length = 220

 Score =  167 bits (422), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 81/177 (45%), Positives = 118/177 (66%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           + ++LL +RIV +  Q+++  A  +C+QLL L AE+P+ +ISLYINSPGG V AG+AIYD
Sbjct: 33  LAAQLLAQRIVLLGTQVDEVSANRVCSQLLVLSAEDPRTDISLYINSPGGSVYAGLAIYD 92

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM+ I   +ST  MG AASMG  LL  G  G R+ALPNARI++HQ S G  G  +DI   
Sbjct: 93  TMRLIPNDVSTLAMGFAASMGQFLLCGGTPGKRYALPNARIMMHQGSAGIGGTTADILIQ 152

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           A+++   K+ +  +  +N G+T E + +  DRD   +A EA ++G+VD+V+ S  D+
Sbjct: 153 AENLDHSKQTMERLLAENTGQTPETIARDGDRDRWFTAEEAREYGMVDRVVESLADV 209


>gi|183601399|ref|ZP_02962769.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219683456|ref|YP_002469839.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|241191101|ref|YP_002968495.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|241196507|ref|YP_002970062.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|63055004|gb|AAY29040.1| predicted ATP-dependent Clp protease proteolytic subunit 2
           [Bifidobacterium animalis subsp. animalis ATCC 25527]
 gi|183219005|gb|EDT89646.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219621106|gb|ACL29263.1| predicted ATP-dependent Clp protease proteolytic subunit 2
           [Bifidobacterium animalis subsp. lactis AD011]
 gi|240249493|gb|ACS46433.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240251061|gb|ACS48000.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|289178845|gb|ADC86091.1| ClpP [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295794090|gb|ADG33625.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 233

 Score =  167 bits (422), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 86/193 (44%), Positives = 136/193 (70%), Gaps = 3/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP   E+T  G ++ + Y+RL  +RI+F+  Q++D  A  I AQLL LE+ +P +++ +
Sbjct: 41  VVPEFTERTPYGMKTQNPYTRLFDDRIIFLGVQVDDTSADDIMAQLLVLESMDPNRDVMM 100

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  +++L+AG KG R  LPNAR+L+
Sbjct: 101 YINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAIILAAGTKGKRLMLPNARVLI 160

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+   GF G+A+DIE  A+++++++  L     K+ G++ E + + ++ D  ++ASEA
Sbjct: 161 HQPAIDQGF-GKATDIEIQAKEMMRMREWLENTLAKHTGQSRERISRDIEVDTFLTASEA 219

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD+VL  R
Sbjct: 220 KEYGIVDEVLEHR 232


>gi|194398443|ref|YP_002037392.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae G54]
 gi|194358110|gb|ACF56558.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae G54]
          Length = 147

 Score =  166 bits (421), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 73/123 (59%), Positives = 99/123 (80%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI  TM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVXTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMI 120

Query: 138 HQP 140
           HQP
Sbjct: 121 HQP 123


>gi|9758729|dbj|BAB09167.1| ATP-dependent Clp protease-like protein [Arabidopsis thaliana]
          Length = 301

 Score =  166 bits (421), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 84/191 (43%), Positives = 124/191 (64%), Gaps = 10/191 (5%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           E   RG  S D+   LL+ERIVF+   I+D +A  I +QLL L+A++P+K+I L+INSPG
Sbjct: 70  ESAIRGAES-DVMGLLLRERIVFLGSSIDDFVADAIMSQLLLLDAKDPKKDIKLFINSPG 128

Query: 84  GVV---------TAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           G +         +A MAIYD +Q ++  +ST  +G AAS  S++L AG KG RFA+PN R
Sbjct: 129 GSLRLNVVIVWFSATMAIYDVVQLVRADVSTIALGIAASTASIILGAGTKGKRFAMPNTR 188

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQP GG SGQA D+E  A++++  K  +  I      +++E+V K +DRD  MS  E
Sbjct: 189 IMIHQPLGGASGQAIDVEIQAKEVMHNKNNVTSIIAGCTSRSFEQVLKDIDRDRYMSPIE 248

Query: 195 ACDWGVVDKVL 205
           A ++G++D V+
Sbjct: 249 AVEYGLIDGVI 259


>gi|120434784|ref|YP_860470.1| ATP-dependent Clp protease proteolytic subunit [Gramella forsetii
           KT0803]
 gi|117576934|emb|CAL65403.1| ATP-dependent Clp protease proteolytic subunit [Gramella forsetii
           KT0803]
          Length = 186

 Score =  166 bits (421), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 80/171 (46%), Positives = 120/171 (70%), Gaps = 1/171 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I ++LL++R +++ G++ D  A  +  +L +L+ E    EI L+INSPGG VT G AIYD
Sbjct: 15  IDNKLLEKRKIYMWGEVSDKTAKYVIDRLEYLDLEG-DGEIQLFINSPGGYVTDGFAIYD 73

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           T+  ++ P+ST C G AASMGS+LLSAG+KG RF  P+A++++HQPSGG  GQAS+IE  
Sbjct: 74  TIMSLESPVSTICTGLAASMGSILLSAGKKGRRFIQPHAKVMIHQPSGGARGQASNIEIA 133

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A +I+K K    EI  +NCG++ ++V K  +RD+ M A E+ ++G+VD + 
Sbjct: 134 ANEILKTKHLSAEIIAENCGQSVDKVLKDFNRDYWMDAEESMEYGIVDGIF 184


>gi|119717698|ref|YP_924663.1| ClpP2 peptidase. Serine peptidase. MEROPS family S14 [Nocardioides
           sp. JS614]
 gi|119538359|gb|ABL82976.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nocardioides
           sp. JS614]
          Length = 206

 Score =  166 bits (421), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 88/190 (46%), Positives = 132/190 (69%), Gaps = 1/190 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P   E+T+ G R  D Y++L ++RI+++   I D +A  + AQLL L++ NP ++IS+Y
Sbjct: 8   IPQWEERTSYGFRRIDPYAKLFEDRIIYLGTPISDDVANAVIAQLLCLQSMNPDQDISIY 67

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TA  AIYDTM+FIKP + T C+GQAAS  ++LL+AG  G R ALPN+RIL+H
Sbjct: 68  INSPGGSFTALTAIYDTMKFIKPDVQTVCIGQAASAAAILLAAGTPGKRLALPNSRILIH 127

Query: 139 QP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP + G  GQ SDIE  A +I++++  L ++   + G++ EEV   ++RD I++A  A +
Sbjct: 128 QPYTEGTFGQTSDIEIQANEILRMRELLEKMISDHSGRSIEEVSHDIERDKILTAEGAVE 187

Query: 198 WGVVDKVLMS 207
           +G++D VL S
Sbjct: 188 YGLIDAVLES 197


>gi|148977888|ref|ZP_01814441.1| ATP-dependent Clp protease proteolytic subunit [Vibrionales
           bacterium SWAT-3]
 gi|145962834|gb|EDK28106.1| ATP-dependent Clp protease proteolytic subunit [Vibrionales
           bacterium SWAT-3]
          Length = 130

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 75/128 (58%), Positives = 99/128 (77%)

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+ G  G R  LPN+R+++HQP
Sbjct: 1   SPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGTPGKRHVLPNSRVMIHQP 60

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            GGF GQASDI+ HAQ+I+ IK++LN++  ++ G+  E VE+  DRD+ MSA +A ++G+
Sbjct: 61  LGGFQGQASDIQIHAQEILTIKQKLNKLLAEHTGQPLEVVERDTDRDNFMSADQAVEYGL 120

Query: 201 VDKVLMSR 208
           VD VL  R
Sbjct: 121 VDSVLNHR 128


>gi|255557703|ref|XP_002519881.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis]
 gi|223540927|gb|EEF42485.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis]
          Length = 294

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 83/186 (44%), Positives = 119/186 (63%), Gaps = 1/186 (0%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P       RG  S D    LL+ERIVF+   I+D +A    +QLL L+A++P K+I L+I
Sbjct: 68  PQTPATAMRGAES-DAMGLLLRERIVFLGNNIDDFVADATISQLLLLDAQDPTKDIRLFI 126

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           N PGG ++A MAIYD +Q ++  +ST  +G +AS  S++L  G KG RFA+PN RI++HQ
Sbjct: 127 NCPGGSLSATMAIYDVVQLVRADVSTVALGISASTASIILGGGTKGKRFAMPNTRIMVHQ 186

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG SGQA D+E  A++I+  K  +  I     G+T E+V K +DRD  MS  EA ++G
Sbjct: 187 PLGGASGQAIDVEIQAREIMHNKNNVVRIISGFTGRTVEQVLKDIDRDRYMSPIEAVEYG 246

Query: 200 VVDKVL 205
           ++D V+
Sbjct: 247 IIDGVI 252


>gi|168064316|ref|XP_001784109.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162664360|gb|EDQ51083.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 230

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 76/172 (44%), Positives = 117/172 (68%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+   +LK+RIVF+  Q++D +A  I +QLL L+A +P KEI L++N PGG ++A MAI+
Sbjct: 14  DVMGLMLKQRIVFLGHQMDDFVADAIVSQLLLLDAVDPNKEIRLFVNCPGGSISAAMAIF 73

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D +Q  +  +ST C G AAS  +++L+ G  G R A+PN+RI++HQP GG SGQA D+E 
Sbjct: 74  DAIQLCRADVSTICFGLAASTAAIVLAGGTPGKRLAMPNSRIMMHQPLGGASGQAIDVEI 133

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            A++++  K  +  I  +  G+  E+VEK +DRD  MS  EA ++G++D V+
Sbjct: 134 QAKEVMYHKSNVTRILSEITGRAPEQVEKDIDRDRYMSPIEAMEYGIIDGVI 185


>gi|269795807|ref|YP_003315262.1| ATP-dependent Clp protease proteolytic subunit ClpP [Sanguibacter
           keddieii DSM 10542]
 gi|269097992|gb|ACZ22428.1| ATP-dependent Clp protease proteolytic subunit ClpP [Sanguibacter
           keddieii DSM 10542]
          Length = 204

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 86/191 (45%), Positives = 131/191 (68%), Gaps = 1/191 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+E+T  GER+ D+YSRLL +RIVF+  +I+D +A ++ AQL+ LE+  P + I LY
Sbjct: 7   IPSVIEKTTTGERAADVYSRLLTDRIVFLGTEIDDGVANVVVAQLIHLESVAPDQGIELY 66

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG V+A +AIYDT+Q+++ P+ T C+GQAAS  ++LL+AGE G R  LP+AR+LLH
Sbjct: 67  INSPGGSVSAMLAIYDTIQYLRAPVGTVCVGQAASSAAVLLAAGEPGRRGILPHARVLLH 126

Query: 139 QPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
            PS     G   D+E  A++I +++  ++EI   + G+    +     RD I +A +A  
Sbjct: 127 PPSTSSGRGALPDLEIQAKEIQRVRDEVDEILAAHTGQDQAVLRADTSRDRIFTAQQAVA 186

Query: 198 WGVVDKVLMSR 208
           +G+VD+V+ SR
Sbjct: 187 YGLVDEVVASR 197


>gi|25028867|ref|NP_738921.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           efficiens YS-314]
 gi|259507929|ref|ZP_05750829.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Corynebacterium efficiens YS-314]
 gi|67460557|sp|Q8FN37|CLPP1_COREF RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|23494154|dbj|BAC19121.1| putative endopeptidase Clp chain P2 [Corynebacterium efficiens
           YS-314]
 gi|259164424|gb|EEW48978.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Corynebacterium efficiens YS-314]
          Length = 208

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 85/192 (44%), Positives = 132/192 (68%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +EQ+  G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE  +P ++I++
Sbjct: 13  VLPSFIEQSAYGTKETNPYAKLFEERIIFLGTQVDDTSANDIMAQLLVLEGMDPDRDITM 72

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA MAIYDTMQ+++P + T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 73  YINSPGGSFTALMAIYDTMQYVRPDVQTVCLGQAASAAAVLLAAGAPGKRAALPNARVLI 132

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP + G  GQ SD+E  A +I ++++ +     ++ GKT E++    DRD I++A  A 
Sbjct: 133 HQPATQGTQGQVSDLEIQAAEIERMRKLMETTLSQHTGKTPEQIRIDTDRDKILTAEGAL 192

Query: 197 DWGVVDKVLMSR 208
           ++G++D+V   R
Sbjct: 193 EYGIIDQVFDYR 204


>gi|168013186|ref|XP_001759282.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689595|gb|EDQ75966.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 205

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 80/175 (45%), Positives = 119/175 (68%)

Query: 31  RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGM 90
           +  D  + LL++RI+F+  Q++D  A +I +QLL L+A++P K+I L+INSPGG VTAGM
Sbjct: 2   QDLDPATMLLQQRILFLGSQVDDFSADVIISQLLLLDAQDPTKDIKLFINSPGGSVTAGM 61

Query: 91  AIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASD 150
            IYD M+  K  +ST C G AASMG+ LL+AG KG R+ +PNAR+++HQP GG  G A D
Sbjct: 62  GIYDAMKLCKADVSTVCFGLAASMGAFLLAAGTKGKRYCMPNARVMIHQPLGGAGGTAID 121

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
                ++++  K +L +I  +  G+   +VE   DRD+ M+A EA ++G+VD V+
Sbjct: 122 GALQVREMMYHKYKLQKIMSRLTGQPEAKVEADTDRDNFMNAWEAKEYGLVDGVI 176


>gi|168050943|ref|XP_001777916.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162670676|gb|EDQ57240.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 201

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 75/172 (43%), Positives = 115/172 (66%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+ + + + RI+FV   +   +A  + ++LL L A N ++EI +YIN PGG   + MAIY
Sbjct: 26  DLSTLMFRNRIIFVGSPVNSEVAQSVVSKLLTLAAINDEEEIKMYINCPGGSTYSIMAIY 85

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D MQ+IKP +ST C G AAS G+LLL+ G+KG RFA+PNARI++HQP GG  G A D+ R
Sbjct: 86  DAMQWIKPDVSTVCFGIAASQGALLLAGGKKGKRFAMPNARIMIHQPQGGCGGTADDVRR 145

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
              +++  + +++++Y   C +  E V K  +RD+  SA+EA D+G++D +L
Sbjct: 146 QVNEVMSSRDKIDQMYSIFCNQPLERVRKFTERDYFFSAAEAMDFGLIDGLL 197


>gi|284029222|ref|YP_003379153.1| endopeptidase Clp [Kribbella flavida DSM 17836]
 gi|283808515|gb|ADB30354.1| Endopeptidase Clp [Kribbella flavida DSM 17836]
          Length = 211

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 84/193 (43%), Positives = 132/193 (68%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+ Q+ RGER  D+YS LL ERI+++   I+  +A  + AQLL LEA+ P ++I+LY
Sbjct: 6   IPNVITQSPRGERIMDVYSHLLSERIIYLGTGIDAGVANALIAQLLHLEADKPDQDINLY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           IN  GG +TA +AIYDT+Q+I+ P+ST C+GQA + G++LL+AGE G R  LP+ARI+LH
Sbjct: 66  INCEGGDMTAMLAIYDTIQYIRSPVSTLCVGQAIAAGAVLLAAGEPGRRAVLPHARIVLH 125

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP+    G   D+   A ++V+++ ++  I   + G+T E++    DRDH+++A  A  +
Sbjct: 126 QPAARGQGTIPDLILQADEVVRVRAQVESILSAHTGQTIEQLRHDTDRDHVLTAEGARAY 185

Query: 199 GVVDKVLMSRIDI 211
           G+VD+V+  R  +
Sbjct: 186 GIVDEVIQHRAQV 198


>gi|119716962|ref|YP_923927.1| ClpP1 peptidase. Serine peptidase. MEROPS family S14 [Nocardioides
           sp. JS614]
 gi|119537623|gb|ABL82240.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nocardioides
           sp. JS614]
          Length = 200

 Score =  166 bits (419), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 79/168 (47%), Positives = 115/168 (68%)

Query: 38  RLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97
           RLL +RI+ +  Q++D +A  +CA+LL L AE+P ++I+LYINSPGG V+AG+AIYDTM+
Sbjct: 15  RLLHQRIIVLGQQVDDDIANKLCAELLLLSAEDPHRDIALYINSPGGSVSAGLAIYDTMR 74

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
            I   +ST  MG AASMG  LLSAG  G R+ALP++R+L+HQ S G  G A DIE  A++
Sbjct: 75  LIPNDVSTLAMGLAASMGQFLLSAGTPGKRYALPHSRVLMHQGSAGIGGTAIDIEIQAEN 134

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           +   K  +  +  ++ G+  E +E+   RD   +A +A ++G VD+VL
Sbjct: 135 LEHTKNVMTGLIAEHTGQPVEVIERDSLRDRWFTAEQAREYGFVDRVL 182


>gi|115443583|ref|YP_778602.1| ATP-dependent Clp protease proteolytic subunit [Bigelowiella
           natans]
 gi|122227446|sp|Q06J25|CLPP_BIGNA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|110810228|gb|ABG91434.1| ATP-dependent Clp protease proteolytic subunit [Bigelowiella
           natans]
          Length = 195

 Score =  166 bits (419), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 80/189 (42%), Positives = 129/189 (68%), Gaps = 2/189 (1%)

Query: 19  VPMVV--EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           +P V+  E T+   +  DIY+RL K+RI+F+   ++D  +  I + LL L++E+ ++ I 
Sbjct: 5   IPKVLFKESTDTTPQWVDIYTRLYKDRIIFLFQLLDDDFSNQIISMLLHLDSESKEELIY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            YINS GG V +G++IYDTM FI   I T C+G A+S+ SL+L+ G++  RF LP++R+L
Sbjct: 65  FYINSVGGSVLSGISIYDTMNFINSEIVTLCIGIASSISSLILANGKRTKRFILPHSRVL 124

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           LHQP    SGQASDI   +++I++++R L +IY++N  +T   V + +DRD  +S+ EA 
Sbjct: 125 LHQPIMQVSGQASDILIESEEILRLRRILTKIYIENIDQTISRVARDIDRDCFLSSREAK 184

Query: 197 DWGVVDKVL 205
           ++G+VD +L
Sbjct: 185 NYGIVDYIL 193


>gi|302800375|ref|XP_002981945.1| hypothetical protein SELMODRAFT_233821 [Selaginella moellendorffii]
 gi|302802337|ref|XP_002982924.1| hypothetical protein SELMODRAFT_234106 [Selaginella moellendorffii]
 gi|300149514|gb|EFJ16169.1| hypothetical protein SELMODRAFT_234106 [Selaginella moellendorffii]
 gi|300150387|gb|EFJ17038.1| hypothetical protein SELMODRAFT_233821 [Selaginella moellendorffii]
          Length = 213

 Score =  166 bits (419), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 79/167 (47%), Positives = 114/167 (68%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           LL++R VF+  Q++D +A  I +QLL L+A + +KEI ++IN PGG V+A M IYD +Q 
Sbjct: 4   LLRQRTVFLGHQLDDFVADAIISQLLLLDAMDSKKEIRMFINCPGGSVSAAMGIYDAIQL 63

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
            +  +ST   G AAS  S++L+ G KG RFA+PN RI++HQP GG SGQA D+E  A++I
Sbjct: 64  CRAEVSTIAFGLAASTASVILAGGTKGKRFAMPNTRIMVHQPMGGASGQAIDVEIQAKEI 123

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           +  K     I  +  GK +E+VEK +DRD  MSA EA ++G++D V+
Sbjct: 124 MFHKNNFTRILAEITGKPFEQVEKDIDRDRYMSAVEAMEYGLIDGVI 170


>gi|255644732|gb|ACU22868.1| unknown [Glycine max]
          Length = 270

 Score =  166 bits (419), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 76/172 (44%), Positives = 121/172 (70%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D  + LL++RI+F+  Q++D  A  I +QLLFL+AE+ +K+I L+INSPGG VTAGM IY
Sbjct: 80  DATNMLLRQRIIFLGSQVDDMTADFIISQLLFLDAEDSKKDIKLFINSPGGSVTAGMGIY 139

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M+  K  +ST C+G AASMG+ +L++G KG R+ +PN+R+++HQP G   G+A+++  
Sbjct: 140 DAMKLCKADVSTVCLGLAASMGAFILASGTKGKRYCMPNSRVMIHQPLGTAGGKATEMSI 199

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
             +++   K ++N+I  +  GK  E++E   DRD+ M+  EA ++G+VD V+
Sbjct: 200 RIREMAYHKIKINKILSRITGKPEEQIELDTDRDNFMNPWEAKEYGLVDGVI 251


>gi|168043511|ref|XP_001774228.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674496|gb|EDQ61004.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 243

 Score =  166 bits (419), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 83/186 (44%), Positives = 123/186 (66%), Gaps = 1/186 (0%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P  +EQ  R  +  D  + LL++RI+F+  Q++D  A LI +Q+L L+A++P ++I L+I
Sbjct: 7   PGGIEQFAR-LQDLDPGTMLLQQRILFLGSQVDDFSADLIISQMLLLDAQDPTRDIKLFI 65

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VTAGM IYD M+  K  +ST C G AASMG+ LL+AG KG R+ +PNAR+++HQ
Sbjct: 66  NSPGGSVTAGMGIYDAMKLCKADVSTVCFGLAASMGAFLLTAGTKGKRYCMPNARVMIHQ 125

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  G A D     ++++  K +L +I  +  G+    VE   DRD+ M+A EA ++G
Sbjct: 126 PLGGAGGTAIDGALQVREMMFHKYKLQKIMSRLTGQPEARVEADTDRDNFMNAWEAMEYG 185

Query: 200 VVDKVL 205
           +VD V+
Sbjct: 186 LVDGVI 191


>gi|283455719|ref|YP_003360283.1| ATP-dependent Clp protease proteolytic subunit 2 [Bifidobacterium
           dentium Bd1]
 gi|283102353|gb|ADB09459.1| clpP2 ATP-dependent Clp protease proteolytic subunit 2
           [Bifidobacterium dentium Bd1]
          Length = 233

 Score =  165 bits (418), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 86/193 (44%), Positives = 137/193 (70%), Gaps = 3/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y+RL ++RI+F+  Q++D  A  I AQLL LE+++P +++ +
Sbjct: 41  VLPQFEEKTPYGFKRQDPYTRLFEDRIIFMGVQVDDTSADDIMAQLLVLESQDPNRDVMM 100

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL+AG KG R  LPNAR+L+
Sbjct: 101 YINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLAAGTKGKRLMLPNARVLI 160

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+   GF G+A++IE  A+++++++  L +   K+ G+  E++ K ++ D  ++A+EA
Sbjct: 161 HQPAIDQGF-GKATEIEIQAKEMLRMREWLEDTLAKHTGQDVEKIRKDIEVDTFLTAAEA 219

Query: 196 CDWGVVDKVLMSR 208
             +G+VD+VL  R
Sbjct: 220 KAYGIVDEVLEHR 232


>gi|309801928|ref|ZP_07696043.1| endopeptidase Clp [Bifidobacterium dentium JCVIHMP022]
 gi|308221484|gb|EFO77781.1| endopeptidase Clp [Bifidobacterium dentium JCVIHMP022]
          Length = 233

 Score =  165 bits (418), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 86/193 (44%), Positives = 137/193 (70%), Gaps = 3/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y+RL ++RI+F+  Q++D  A  I AQLL LE+++P +++ +
Sbjct: 41  VLPQFEEKTPYGFKRQDPYTRLFEDRIIFMGVQVDDTSADDIMAQLLVLESQDPNRDVMM 100

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL+AG KG R  LPNAR+L+
Sbjct: 101 YINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLAAGTKGKRLMLPNARVLI 160

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+   GF G+A++IE  A+++++++  L +   K+ G+  E++ K ++ D  ++A+EA
Sbjct: 161 HQPAIDQGF-GKATEIEIQAKEMLRMREWLEDTLAKHTGQDVEKIRKDIEVDTFLTAAEA 219

Query: 196 CDWGVVDKVLMSR 208
             +G+VD+VL  R
Sbjct: 220 KAYGIVDEVLEHR 232


>gi|226309396|ref|YP_002769356.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rhodococcus
           erythropolis PR4]
 gi|226188513|dbj|BAH36617.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rhodococcus
           erythropolis PR4]
          Length = 202

 Score =  165 bits (418), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 80/190 (42%), Positives = 122/190 (64%), Gaps = 1/190 (0%)

Query: 26  TNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV 85
           T+ G R   +  RL ++R + +TG++ D MA  +C++L+ L   +P+++I LYINSPGG 
Sbjct: 7   TDTGYRDL-LTDRLFRQRTILLTGEVNDAMAERVCSELVLLATTDPKRDIVLYINSPGGS 65

Query: 86  VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS 145
           V AG+AIYDTM+ I   + T  MG AASMG +LL +G  G R +L ++RI++HQPS G  
Sbjct: 66  VFAGLAIYDTMKLIPNDVVTVAMGFAASMGQVLLCSGTHGKRISLAHSRIMMHQPSAGIG 125

Query: 146 GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           G A DI   A+ +  +KR+  EI     G+T EE+E   DRD   +A +A ++G+VD+V+
Sbjct: 126 GTAVDIAIQAESLELMKRQSQEILAAETGRTVEEIETDSDRDRWFTAEQAREYGIVDRVV 185

Query: 206 MSRIDIEEKS 215
            S  +I  ++
Sbjct: 186 TSFAEIAPQA 195


>gi|306823253|ref|ZP_07456629.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           dentium ATCC 27679]
 gi|304553885|gb|EFM41796.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           dentium ATCC 27679]
          Length = 235

 Score =  165 bits (418), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 86/193 (44%), Positives = 137/193 (70%), Gaps = 3/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y+RL ++RI+F+  Q++D  A  I AQLL LE+++P +++ +
Sbjct: 43  VLPQFEEKTPYGFKRQDPYTRLFEDRIIFMGVQVDDTSADDIMAQLLVLESQDPNRDVMM 102

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL+AG KG R  LPNAR+L+
Sbjct: 103 YINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLAAGTKGKRLMLPNARVLI 162

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+   GF G+A++IE  A+++++++  L +   K+ G+  E++ K ++ D  ++A+EA
Sbjct: 163 HQPAIDQGF-GKATEIEIQAKEMLRMREWLEDTLAKHTGQDVEKIRKDIEVDTFLTAAEA 221

Query: 196 CDWGVVDKVLMSR 208
             +G+VD+VL  R
Sbjct: 222 KAYGIVDEVLEHR 234


>gi|168036513|ref|XP_001770751.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162677969|gb|EDQ64433.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 195

 Score =  165 bits (418), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 74/172 (43%), Positives = 115/172 (66%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+ + + + RI+FV   +   +A  + ++LL L A N ++EI +YIN PGG   + MAI+
Sbjct: 20  DLSTLMFRNRIIFVGSSVNSEVAQSVISKLLTLAAINDEEEIKMYINCPGGSTYSIMAIF 79

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D MQ+IKP +ST C G AAS G+LLL+ G+KG RFA+PNARI++HQP GG  G A D+ R
Sbjct: 80  DAMQWIKPDVSTVCFGIAASQGALLLAGGKKGKRFAMPNARIMIHQPQGGCGGTADDVRR 139

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
              +++  + +++++Y   C +  E V K  +RD+  SA+EA D+G++D +L
Sbjct: 140 QVNEVMSSRDKIDKMYSTFCNQPLERVRKFTERDYFFSAAEALDFGLIDGLL 191


>gi|229817802|ref|ZP_04448084.1| hypothetical protein BIFANG_03078 [Bifidobacterium angulatum DSM
           20098]
 gi|229785591|gb|EEP21705.1| hypothetical protein BIFANG_03078 [Bifidobacterium angulatum DSM
           20098]
          Length = 215

 Score =  165 bits (418), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 87/193 (45%), Positives = 137/193 (70%), Gaps = 3/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G ++ D YSRL ++RI+F+  Q++D  A  I AQLL LE+++P +++ +
Sbjct: 23  VMPQFSEKTPYGMKTMDAYSRLFEDRIIFLGVQVDDTSADDIMAQLLVLESQDPNRDVMM 82

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL+AG +G R  LPNAR+L+
Sbjct: 83  YINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLAAGAEGKRLMLPNARVLI 142

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+   GF G+A++IE  A+++++++  L     K+ G+  E + K ++ D  ++ASEA
Sbjct: 143 HQPAIDQGF-GKATEIEIQAREMLRMREWLENTLAKHTGQPVERIRKDIEVDTFLTASEA 201

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD+VL  R
Sbjct: 202 KEYGIVDEVLEHR 214


>gi|171743308|ref|ZP_02919115.1| hypothetical protein BIFDEN_02439 [Bifidobacterium dentium ATCC
           27678]
 gi|171278922|gb|EDT46583.1| hypothetical protein BIFDEN_02439 [Bifidobacterium dentium ATCC
           27678]
          Length = 235

 Score =  165 bits (418), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 86/193 (44%), Positives = 137/193 (70%), Gaps = 3/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y+RL ++RI+F+  Q++D  A  I AQLL LE+++P +++ +
Sbjct: 43  VLPQFEEKTPYGFKRQDPYTRLFEDRIIFMGVQVDDTSADDIMAQLLVLESQDPNRDVMM 102

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL+AG KG R  LPNAR+L+
Sbjct: 103 YINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLAAGTKGKRLMLPNARVLI 162

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+   GF G+A++IE  A+++++++  L +   K+ G+  E++ K ++ D  ++A+EA
Sbjct: 163 HQPAIDQGF-GKATEIEIQAKEMLRMREWLEDTLAKHTGQDVEKIRKDIEVDTFLTAAEA 221

Query: 196 CDWGVVDKVLMSR 208
             +G+VD+VL  R
Sbjct: 222 KAYGIVDEVLEHR 234


>gi|262201603|ref|YP_003272811.1| endopeptidase Clp [Gordonia bronchialis DSM 43247]
 gi|262084950|gb|ACY20918.1| Endopeptidase Clp [Gordonia bronchialis DSM 43247]
          Length = 201

 Score =  165 bits (418), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 81/187 (43%), Positives = 125/187 (66%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VV +T +GER  D+YSRLL+ERI+++   ++D +A  + AQ+L L+++NP+  I LY
Sbjct: 6   IPNVVSRTPQGERVMDVYSRLLEERIIYLGTPVDDDVANALIAQILHLDSDNPEAPIDLY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INS GG V A  A+YDTMQ+   PI+T C+GQA S  +LLL+AG+ G R  LP+AR+LLH
Sbjct: 66  INSTGGSVNATFALYDTMQYCHAPIATTCVGQALSSSALLLAAGDAGRRSVLPHARVLLH 125

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSG   G   D+   A++I++++  + E   ++ G+    + +  DRD ++ A E  D+
Sbjct: 126 QPSGQGRGTIPDLILAAEEILRVREEMEEALSRHTGRDIATLRRDTDRDRVLRADEIVDY 185

Query: 199 GVVDKVL 205
           G+ D V+
Sbjct: 186 GIADAVI 192


>gi|294790932|ref|ZP_06756090.1| Clp protease [Scardovia inopinata F0304]
 gi|294458829|gb|EFG27182.1| Clp protease [Scardovia inopinata F0304]
          Length = 216

 Score =  165 bits (417), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 84/192 (43%), Positives = 135/192 (70%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T+ G +  D Y++L ++RI+F+  Q++D  A  I AQLL LE+++P +++ L
Sbjct: 24  VMPQFEEKTSFGYKRSDPYTKLFEDRIIFMGVQVDDASADDIMAQLLVLESQDPDRDVVL 83

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL+AG KG R  LPNAR+L+
Sbjct: 84  YINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLAAGTKGKRLMLPNARVLI 143

Query: 138 HQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+ G   G+A++IE  A+++++++  L     K+ G+  E + K ++ D I++A +A 
Sbjct: 144 HQPAMGQDFGKATEIEIQAKELLRMREWLENTLAKHTGQDVERIRKDIETDTILTAEQAK 203

Query: 197 DWGVVDKVLMSR 208
           ++G+VD +L  R
Sbjct: 204 EYGMVDAILEHR 215


>gi|254821427|ref|ZP_05226428.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           intracellulare ATCC 13950]
          Length = 211

 Score =  165 bits (417), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 87/193 (45%), Positives = 130/193 (67%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +E ++ G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE+ +P ++I++
Sbjct: 12  ILPSFIEHSSFGVKESNPYNKLFEERIIFLGVQVDDASANDIMAQLLVLESLDPDRDITM 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++  I T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 72  YINSPGGGFTSLMAIYDTMQYVRADIQTVCLGQAASAAAVLLAAGTPGKRMALPNARVLI 131

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQPS  G   GQ SD+E  A +I +++  +     ++ GK    V K  DRD I++A EA
Sbjct: 132 HQPSLQGVIQGQFSDLEIQAAEIERMRTLMETTLARHTGKDAATVRKDTDRDKILTAEEA 191

Query: 196 CDWGVVDKVLMSR 208
            D+G++D VL  R
Sbjct: 192 KDYGIIDTVLEYR 204


>gi|118473678|ref|YP_888935.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           smegmatis str. MC2 155]
 gi|118174965|gb|ABK75861.1| Clp protease [Mycobacterium smegmatis str. MC2 155]
          Length = 218

 Score =  165 bits (417), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 85/193 (44%), Positives = 131/193 (67%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +E ++ G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE+ +P ++I++
Sbjct: 19  ILPSFIEHSSFGVKESNPYNKLFEERIIFLGVQVDDASANDIMAQLLVLESLDPDRDITM 78

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++  I T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 79  YINSPGGSFTSLMAIYDTMQYVRADIQTVCLGQAASAAAVLLAAGTPGKRLALPNARVLI 138

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SG   GQ SD+E  A +I +++  +     ++ GK   ++ K  DRD I++A EA
Sbjct: 139 HQPALSGVIQGQFSDLEIQAAEIERMRTLMETTLARHTGKDPAQIRKDTDRDKILTAEEA 198

Query: 196 CDWGVVDKVLMSR 208
            ++G++D VL  R
Sbjct: 199 KEYGIIDTVLQYR 211


>gi|194476563|ref|YP_002048742.1| ATP-dependent Clp protease proteolytic subunit [Paulinella
           chromatophora]
 gi|171191570|gb|ACB42532.1| ATP-dependent Clp protease proteolytic subunit [Paulinella
           chromatophora]
          Length = 191

 Score =  165 bits (417), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 78/176 (44%), Positives = 123/176 (69%), Gaps = 1/176 (0%)

Query: 31  RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGM 90
           R+ D  S +  ERI+F+TG++ED+MA  + A LL+  A++ +  I LYINS GG +++G+
Sbjct: 16  RAADPISAMSMERILFITGEVEDYMANQMVANLLYFNAQSVKDPIHLYINSDGGSISSGL 75

Query: 91  AIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS-GQAS 149
           AIYDT+ +IK P++T C+G A+SM + LL+AG +G R AL ++RI++HQP GG    QAS
Sbjct: 76  AIYDTINYIKAPVTTTCLGSASSMAAFLLAAGSRGERRALKHSRIMIHQPIGGIGRRQAS 135

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           D+   A ++   KR++NE   +  G+T +++EK  DRD+ +SA EA  +G++D V+
Sbjct: 136 DLLIEASEMAFTKRKMNECMAEMTGQTIDKIEKDTDRDYHLSAFEALRYGIIDSVV 191


>gi|54023301|ref|YP_117543.1| ATP-dependent Clp protease proteolytic subunit [Nocardia farcinica
           IFM 10152]
 gi|67460458|sp|Q5Z062|CLPP3_NOCFA RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
           AltName: Full=Endopeptidase Clp 3
 gi|54014809|dbj|BAD56179.1| putative Clp protease proteolytic subunit [Nocardia farcinica IFM
           10152]
          Length = 221

 Score =  165 bits (417), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 83/193 (43%), Positives = 132/193 (68%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +E ++ G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE+ +P ++I++
Sbjct: 23  ILPSFIEHSSFGVKESNPYNKLFEERIIFLGVQVDDASANDIMAQLLVLESLDPDRDITM 82

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++  ++T C+GQAAS  ++LL+AG  G R  LPNAR+L+
Sbjct: 83  YINSPGGSFTSLMAIYDTMQYVRADVATVCLGQAASAAAVLLAAGTPGKRACLPNARVLI 142

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQPS  GG  GQ SD+E  A +I +++R +     ++ GK  + + K  DRD I++A +A
Sbjct: 143 HQPSLEGGIQGQVSDLEIQAAEIERMRRLMETTLARHTGKDPDTIRKDTDRDKILTAEDA 202

Query: 196 CDWGVVDKVLMSR 208
            ++G++D V   R
Sbjct: 203 KEYGIIDTVFDYR 215


>gi|89890619|ref|ZP_01202129.1| ATP-dependent proteolytic subunit of ClpA-ClpP serine protease
           [Flavobacteria bacterium BBFL7]
 gi|89517534|gb|EAS20191.1| ATP-dependent proteolytic subunit of ClpA-ClpP serine protease
           [Flavobacteria bacterium BBFL7]
          Length = 180

 Score =  164 bits (416), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 79/166 (47%), Positives = 113/166 (68%), Gaps = 1/166 (0%)

Query: 40  LKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           +++R +F+ G + D  A     +LL+L++ N  +EI+  INSPGG VT+G +IYDTMQ I
Sbjct: 16  IEQRKIFIWGMVNDQTAKHCVDRLLYLDSLN-HEEITFVINSPGGYVTSGFSIYDTMQQI 74

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
           K P+ST C G AASMGSLLLS GEKG RF   + R+++HQPSGG  G ++DIE  A +I+
Sbjct: 75  KSPVSTVCSGLAASMGSLLLSGGEKGRRFIQKHGRVMIHQPSGGARGTSADIEITAAEIL 134

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           K K     I   NCG+T+E++ K  +RD+ + A EA  +G+VD ++
Sbjct: 135 KTKELSAHILADNCGQTFEKIMKDFNRDYWLGADEAVAYGIVDGIV 180


>gi|120404993|ref|YP_954822.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           vanbaalenii PYR-1]
 gi|119957811|gb|ABM14816.1| ATP-dependent Clp protease proteolytic subunit ClpP / ClpP2
           peptidase, Serine peptidase, MEROPS family S14
           [Mycobacterium vanbaalenii PYR-1]
          Length = 212

 Score =  164 bits (416), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 85/193 (44%), Positives = 132/193 (68%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +E ++ G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE+ +P ++I++
Sbjct: 13  ILPSFIEHSSFGVKESNPYNKLFEERIIFLGVQVDDASANDIMAQLLVLESLDPDRDITM 72

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++  I T C+GQAAS  ++LL+AG  G R ALPNARIL+
Sbjct: 73  YINSPGGSFTSLMAIYDTMQYVRADIQTVCLGQAASAAAVLLAAGTPGKRMALPNARILI 132

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+  G   GQ SD+E  A +I +++  + E   ++ GK   ++ K  DRD I++A +A
Sbjct: 133 HQPALGGVIQGQFSDLEIQAAEIERMRTLMEETLARHTGKDAAQIRKDTDRDKILTAEQA 192

Query: 196 CDWGVVDKVLMSR 208
            ++G++D VL  R
Sbjct: 193 KEYGIIDTVLEYR 205


>gi|315655111|ref|ZP_07908013.1| ATP-dependent Clp protease, protease subunit [Mobiluncus curtisii
           ATCC 51333]
 gi|315657031|ref|ZP_07909916.1| ATP-dependent Clp protease, protease subunit [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
 gi|315490592|gb|EFU80215.1| ATP-dependent Clp protease, protease subunit [Mobiluncus curtisii
           ATCC 51333]
 gi|315492423|gb|EFU82029.1| ATP-dependent Clp protease, protease subunit [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
          Length = 236

 Score =  164 bits (416), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 86/192 (44%), Positives = 133/192 (69%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++RIVF+  Q++D  A  + AQLL LE+++P   I++
Sbjct: 39  ILPTFEERTAYGYKRQDPYAKLFEDRIVFLGNQVDDASADDVMAQLLVLESQDPDSLITM 98

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+IKP I T C+GQAAS  ++LL+ G  G R ALPNAR+L+
Sbjct: 99  YINSPGGSFTAMTAIYDTMQYIKPEIQTVCLGQAASAAAVLLAGGAPGKRLALPNARVLI 158

Query: 138 HQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+  G  GQA+D+   A++I +++  L E   K+  ++ E++ + +DRD I++A +A 
Sbjct: 159 HQPAIQGAQGQATDLAIIAEEIDRMRAWLEETLSKHSKRSVEQMHEDIDRDKILTAPQAL 218

Query: 197 DWGVVDKVLMSR 208
           ++G++D+VL  R
Sbjct: 219 EYGLIDQVLEPR 230


>gi|310287698|ref|YP_003938956.1| ATP-dependent Clp protease proteolytic subunit 2 [Bifidobacterium
           bifidum S17]
 gi|309251634|gb|ADO53382.1| ATP-dependent Clp protease proteolytic subunit 2 [Bifidobacterium
           bifidum S17]
          Length = 239

 Score =  164 bits (416), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 86/193 (44%), Positives = 137/193 (70%), Gaps = 3/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G ++ D Y++L ++RI+F+  Q++D  A  I AQLL LE+++P +++ +
Sbjct: 47  VLPQFSEKTPYGMKTQDPYTKLFEDRIIFMGVQVDDTSADDIMAQLLVLESQDPSRDVMM 106

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL+AG KG R  LPNAR+L+
Sbjct: 107 YINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLAAGAKGKRLMLPNARVLI 166

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+   GF G+A++IE  A+++++++  L     K+ G+  E++ K ++ D  ++A EA
Sbjct: 167 HQPAIDQGF-GKATEIEIQAKEMLRMREWLENTLAKHTGQDVEKIRKDIEVDTFLTAQEA 225

Query: 196 CDWGVVDKVLMSR 208
            D+G+VD+VL  R
Sbjct: 226 KDYGIVDEVLEHR 238


>gi|297563812|ref|YP_003682785.1| Endopeptidase Clp [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
 gi|296848261|gb|ADH70279.1| Endopeptidase Clp [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
          Length = 219

 Score =  164 bits (416), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 77/184 (41%), Positives = 119/184 (64%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           ++T+ G     + +RLL+ RIV +  Q+++  A  +CAQ+L L  E+P+++I+L +NSPG
Sbjct: 9   DETSGGAFDDQLATRLLRSRIVLLGTQVDEASANRVCAQILLLADEDPRRDITLAVNSPG 68

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           G V+AG+AIYD M F+   +ST  MG AASMG  L   G  G R++LP+ARI++HQPSGG
Sbjct: 69  GSVSAGLAIYDVMNFVPNDVSTLVMGFAASMGQFLACVGTPGKRYSLPHARIMMHQPSGG 128

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
             G A+DI   A+++   K+ +  +  K+ G+T E + +   RD   +A EA ++G VD 
Sbjct: 129 LGGTAADIAIQAENLAHTKQTMVRLIAKHTGQTEETISRDQHRDAWFTAQEAREYGFVDH 188

Query: 204 VLMS 207
           V+ S
Sbjct: 189 VVAS 192


>gi|224283328|ref|ZP_03646650.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           bifidum NCIMB 41171]
 gi|313140480|ref|ZP_07802673.1| ATP-dependent Clp protease proteolytic subunit 1 [Bifidobacterium
           bifidum NCIMB 41171]
 gi|313132990|gb|EFR50607.1| ATP-dependent Clp protease proteolytic subunit 1 [Bifidobacterium
           bifidum NCIMB 41171]
          Length = 239

 Score =  164 bits (416), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 86/193 (44%), Positives = 137/193 (70%), Gaps = 3/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G ++ D Y++L ++RI+F+  Q++D  A  I AQLL LE+++P +++ +
Sbjct: 47  VLPQFSEKTPYGMKTQDPYTKLFEDRIIFMGVQVDDTSADDIMAQLLVLESQDPSRDVMM 106

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL+AG KG R  LPNAR+L+
Sbjct: 107 YINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLAAGAKGKRLMLPNARVLI 166

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+   GF G+A++IE  A+++++++  L     K+ G+  E++ K ++ D  ++A EA
Sbjct: 167 HQPAIDQGF-GKATEIEIQAKEMLRMREWLENTLAKHTGQDVEKIRKDIEVDTFLTAQEA 225

Query: 196 CDWGVVDKVLMSR 208
            D+G+VD+VL  R
Sbjct: 226 KDYGIVDEVLEHR 238


>gi|311064596|ref|YP_003971321.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           bifidum PRL2010]
 gi|310866915|gb|ADP36284.1| ClpP2 ATP-dependent Clp protease proteolytic subunit
           [Bifidobacterium bifidum PRL2010]
          Length = 239

 Score =  164 bits (416), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 86/193 (44%), Positives = 137/193 (70%), Gaps = 3/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G ++ D Y++L ++RI+F+  Q++D  A  I AQLL LE+++P +++ +
Sbjct: 47  VLPQFSEKTPYGMKTQDPYTKLFEDRIIFMGVQVDDTSADDIMAQLLVLESQDPSRDVMM 106

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL+AG KG R  LPNAR+L+
Sbjct: 107 YINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLAAGAKGKRLMLPNARVLI 166

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+   GF G+A++IE  A+++++++  L     K+ G+  E++ K ++ D  ++A EA
Sbjct: 167 HQPAIDQGF-GKATEIEIQAKEMLRMREWLENTLAKHTGQDVEKIRKDIEVDTFLTAQEA 225

Query: 196 CDWGVVDKVLMSR 208
            D+G+VD+VL  R
Sbjct: 226 KDYGIVDEVLEHR 238


>gi|298346554|ref|YP_003719241.1| endopeptidase Clp [Mobiluncus curtisii ATCC 43063]
 gi|304389728|ref|ZP_07371687.1| ATP-dependent Clp protease proteolytic subunit [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|298236615|gb|ADI67747.1| endopeptidase Clp [Mobiluncus curtisii ATCC 43063]
 gi|304326904|gb|EFL94143.1| ATP-dependent Clp protease proteolytic subunit [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
          Length = 235

 Score =  164 bits (416), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 86/192 (44%), Positives = 133/192 (69%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++RIVF+  Q++D  A  + AQLL LE+++P   I++
Sbjct: 39  ILPTFEERTAYGYKRQDPYAKLFEDRIVFLGNQVDDASADDVMAQLLVLESQDPDSLITM 98

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+IKP I T C+GQAAS  ++LL+ G  G R ALPNAR+L+
Sbjct: 99  YINSPGGSFTAMTAIYDTMQYIKPEIQTVCLGQAASAAAVLLAGGAPGKRLALPNARVLI 158

Query: 138 HQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+  G  GQA+D+   A++I +++  L E   K+  ++ E++ + +DRD I++A +A 
Sbjct: 159 HQPAIQGAQGQATDLAIIAEEIDRMRAWLEETLSKHSKRSVEQMHEDIDRDKILTAPQAL 218

Query: 197 DWGVVDKVLMSR 208
           ++G++D+VL  R
Sbjct: 219 EYGLIDQVLEPR 230


>gi|3599968|gb|AAC35489.1| clp protease [Arabidopsis thaliana]
          Length = 310

 Score =  164 bits (416), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 73/172 (42%), Positives = 123/172 (71%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D  + LL++RIVF+  Q++D  A L+ +QLL L+AE+ +++I+L+INSPGG +TAGM IY
Sbjct: 86  DTTNMLLRQRIVFLGSQVDDMTADLVISQLLLLDAEDSERDITLFINSPGGSITAGMGIY 145

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M+  K  +ST C+G AASMG+ LL++G KG R+ +PN+++++HQP G   G+A+++  
Sbjct: 146 DAMKQCKADVSTVCLGLAASMGAFLLASGSKGKRYCMPNSKVMIHQPLGTAGGKATEMSI 205

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
             ++++  K +LN+I+ +  GK   E+E   DRD+ ++  EA ++G++D V+
Sbjct: 206 RIREMMYHKIKLNKIFSRITGKPESEIESDTDRDNFLNPWEAKEYGLIDAVI 257


>gi|303274250|ref|XP_003056447.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226462531|gb|EEH59823.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 209

 Score =  164 bits (415), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 84/203 (41%), Positives = 128/203 (63%), Gaps = 9/203 (4%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G  PMV+E      R   + ++L+ +RI+ + G ++D    LI AQLL+L+A +P ++I+
Sbjct: 4   GPPPMVME------RFQSVATQLMNQRIIRLGGAVDDDSCNLIVAQLLWLDAADPNQDIT 57

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG---MRFALPNA 133
           +Y+NSPGG VTAGMA++DTM+ ++P +ST C+G AASMG        +      ++LPN+
Sbjct: 58  IYVNSPGGSVTAGMAVFDTMRHVRPNVSTVCVGLAASMGKFTYEIHLRPPYLFSYSLPNS 117

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           RI++HQP GG  GQA+DIE  A +I+  K  LN    +  GK  E V +  DRD  MSA+
Sbjct: 118 RIMIHQPLGGAQGQAADIEIQANEIMHHKSTLNGYLAEFTGKPLEMVMEDTDRDFFMSAT 177

Query: 194 EACDWGVVDKVLMSRIDIEEKSK 216
           EA ++G++D V+    D+  +S 
Sbjct: 178 EAKEYGLIDTVIEHPTDVAVRSS 200


>gi|13899067|gb|AAK48955.1|AF370528_1 ATP-dependent Clp protease; nClpP3 [Arabidopsis thaliana]
 gi|18377550|gb|AAL66941.1| ATP-dependent Clp protease (nClpP3) [Arabidopsis thaliana]
          Length = 309

 Score =  164 bits (415), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 73/172 (42%), Positives = 123/172 (71%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D  + LL++RIVF+  Q++D  A L+ +QLL L+AE+ +++I+L+INSPGG +TAGM IY
Sbjct: 85  DTTNMLLRQRIVFLGSQVDDMTADLVISQLLLLDAEDSERDITLFINSPGGSITAGMGIY 144

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M+  K  +ST C+G AASMG+ LL++G KG R+ +PN+++++HQP G   G+A+++  
Sbjct: 145 DAMKQCKADVSTVCLGLAASMGAFLLASGSKGKRYCMPNSKVMIHQPLGTAGGKATEMSI 204

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
             ++++  K +LN+I+ +  GK   E+E   DRD+ ++  EA ++G++D V+
Sbjct: 205 RIREMMYHKIKLNKIFSRITGKPESEIESDTDRDNFLNPWEAKEYGLIDAVI 256


>gi|18408572|ref|NP_564880.1| CLPP3; serine-type endopeptidase [Arabidopsis thaliana]
 gi|75314059|sp|Q9SXJ6|CLPP3_ARATH RecName: Full=ATP-dependent Clp protease proteolytic subunit 3,
           chloroplastic; AltName: Full=Endopeptidase ClpP3;
           Short=nClpP3; AltName: Full=nClpP4; Flags: Precursor
 gi|12322291|gb|AAG51173.1|AC079285_6 ATP-dependent Clp protease (nClpP3) [Arabidopsis thaliana]
 gi|12597762|gb|AAG60075.1|AC013288_9 ATP-dependent Clp protease (nClpP3) [Arabidopsis thaliana]
 gi|5360591|dbj|BAA82067.1| nClpP3 [Arabidopsis thaliana]
 gi|21592949|gb|AAM64899.1| ATP-dependent Clp protease proteolytic subunit ClpP3 [Arabidopsis
           thaliana]
 gi|332196422|gb|AEE34543.1| ATP-dependent Clp protease proteolytic subunit 3 [Arabidopsis
           thaliana]
          Length = 309

 Score =  164 bits (415), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 73/172 (42%), Positives = 123/172 (71%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D  + LL++RIVF+  Q++D  A L+ +QLL L+AE+ +++I+L+INSPGG +TAGM IY
Sbjct: 85  DTTNMLLRQRIVFLGSQVDDMTADLVISQLLLLDAEDSERDITLFINSPGGSITAGMGIY 144

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M+  K  +ST C+G AASMG+ LL++G KG R+ +PN+++++HQP G   G+A+++  
Sbjct: 145 DAMKQCKADVSTVCLGLAASMGAFLLASGSKGKRYCMPNSKVMIHQPLGTAGGKATEMSI 204

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
             ++++  K +LN+I+ +  GK   E+E   DRD+ ++  EA ++G++D V+
Sbjct: 205 RIREMMYHKIKLNKIFSRITGKPESEIESDTDRDNFLNPWEAKEYGLIDAVI 256


>gi|261755075|ref|ZP_05998784.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brucella suis
           bv. 3 str. 686]
 gi|261744828|gb|EEY32754.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brucella suis
           bv. 3 str. 686]
          Length = 109

 Score =  164 bits (415), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 72/101 (71%), Positives = 90/101 (89%)

Query: 108 MGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNE 167
           MGQAASMGSLLL+AG  G R+ALPNARI++HQPSGGF GQASDIERHAQDI+K+KRRLNE
Sbjct: 1   MGQAASMGSLLLTAGATGHRYALPNARIMVHQPSGGFQGQASDIERHAQDIIKMKRRLNE 60

Query: 168 IYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           IYVK+ G+ Y+ +E+TLDRDH M+A EA ++G++DKV+ +R
Sbjct: 61  IYVKHTGRDYDTIERTLDRDHFMTAQEALEFGLIDKVVEAR 101


>gi|284030229|ref|YP_003380160.1| endopeptidase Clp [Kribbella flavida DSM 17836]
 gi|283809522|gb|ADB31361.1| Endopeptidase Clp [Kribbella flavida DSM 17836]
          Length = 203

 Score =  164 bits (415), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 83/191 (43%), Positives = 134/191 (70%), Gaps = 1/191 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            +P   E+T+ G R  D Y++L ++RI+F+   I D +A  + AQLL L++ +  ++IS+
Sbjct: 4   FIPQWEERTSYGMRRIDPYTKLFEDRIIFLGTPITDEIANAVMAQLLCLQSMDSDRDISI 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDT+++IKP + T C+GQAAS  ++LL+AG  G R ALPN+RI++
Sbjct: 64  YINSPGGSFTALTAIYDTIRYIKPDVQTVCLGQAASAAAVLLAAGTPGKRLALPNSRIII 123

Query: 138 HQPSG-GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+  G  GQ+SDIE  A +I++++  L ++  +  GK++EEV + ++RD  ++A +A 
Sbjct: 124 HQPATEGTYGQSSDIEIQANEILRLRALLEKMLAEASGKSHEEVSRDIERDKFLTADQAI 183

Query: 197 DWGVVDKVLMS 207
           ++G++D VL +
Sbjct: 184 EYGLIDDVLQT 194


>gi|6069464|dbj|BAA85451.1| S-locus protein 2 [Brassica rapa]
          Length = 311

 Score =  164 bits (415), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 73/172 (42%), Positives = 123/172 (71%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D  + LL++RIVF+  Q++D  A L+ +QLL L+A++ +++I+L+INSPGG +TAGM IY
Sbjct: 87  DTTNMLLRQRIVFLGSQVDDMTADLVISQLLLLDAQDSERDITLFINSPGGSITAGMGIY 146

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M+  K  +ST C+G AASMG+ LL++G KG R+ +PN+++++HQP G   G+A+++  
Sbjct: 147 DAMKQCKADVSTVCLGLAASMGAFLLASGSKGKRYCMPNSKVMIHQPLGSAGGKATEMSI 206

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
             ++++  K +LN+I+ +  GK   E+E   DRD+ ++  EA ++G+VD V+
Sbjct: 207 RVREMMYHKIKLNKIFSRITGKPESEIEGDTDRDYFLNPWEAKEYGLVDAVI 258


>gi|7657879|emb|CAB89185.1| ClpP [Brassica napus var. napus]
          Length = 313

 Score =  164 bits (415), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 73/172 (42%), Positives = 123/172 (71%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D  + LL++RIVF+  Q++D  A L+ +QLL L+A++ +++I+L+INSPGG +TAGM IY
Sbjct: 89  DTTNMLLRQRIVFLGSQVDDMTADLVISQLLLLDAQDSERDITLFINSPGGSITAGMGIY 148

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M+  K  +ST C+G AASMG+ LL++G KG R+ +PN+++++HQP G   G+A+++  
Sbjct: 149 DAMKQCKADVSTVCLGLAASMGAFLLASGSKGKRYCMPNSKVMIHQPLGSAGGKATEMSI 208

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
             ++++  K +LN+I+ +  GK   E+E   DRD+ ++  EA ++G+VD V+
Sbjct: 209 RVREMMYHKIKLNKIFSRITGKPESEIEGDTDRDYFLNPWEAKEYGLVDAVI 260


>gi|38234362|ref|NP_940129.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           diphtheriae NCTC 13129]
 gi|67460485|sp|Q6NFU5|CLPP1_CORDI RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|38200625|emb|CAE50321.1| ATP-dependent Clp protease proteolytic subunit 2 [Corynebacterium
           diphtheriae]
          Length = 209

 Score =  164 bits (415), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 83/192 (43%), Positives = 133/192 (69%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +EQ+  G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE  +P ++I++
Sbjct: 14  VLPSFIEQSAYGTKETNPYAKLFEERIIFLGTQVDDTSANDIMAQLLVLEGLDPDRDITM 73

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++P + T C+GQAAS  ++LL+AG  G R  LPN+R+L+
Sbjct: 74  YINSPGGSFTSLMAIYDTMQYVRPDVRTVCLGQAASAAAVLLAAGAPGKRACLPNSRVLI 133

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP + G  GQ SD+E  A++I +++  + +   ++ G++ E+V    DRD I++A EA 
Sbjct: 134 HQPATQGTQGQVSDLEIQAKEIERMRTLMEQTLARHTGRSAEQVRIDTDRDKILTAEEAV 193

Query: 197 DWGVVDKVLMSR 208
           ++G+VD+V   R
Sbjct: 194 EYGIVDQVFDYR 205


>gi|297841293|ref|XP_002888528.1| hypothetical protein ARALYDRAFT_894344 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297334369|gb|EFH64787.1| hypothetical protein ARALYDRAFT_894344 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 308

 Score =  164 bits (415), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 73/172 (42%), Positives = 123/172 (71%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D  + LL++RIVF+  Q++D  A L+ +QLL L+AE+ +++I+L+INSPGG +TAGM IY
Sbjct: 84  DTTNMLLRQRIVFLGSQVDDMTADLVISQLLLLDAEDSERDITLFINSPGGSITAGMGIY 143

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M+  K  +ST C+G AASMG+ LL++G KG R+ +PN+++++HQP G   G+A+++  
Sbjct: 144 DAMKQCKADVSTVCLGLAASMGAFLLASGSKGKRYCMPNSKVMIHQPLGTAGGKATEMSI 203

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
             ++++  K +LN+I+ +  GK   E+E   DRD+ ++  EA ++G++D V+
Sbjct: 204 RIREMMYHKIKLNKIFSRITGKPESEIEGDTDRDNFLNPWEAKEYGLIDAVI 255


>gi|15864561|emb|CAC80640.1| ClpP putative protein [Brassica napus]
          Length = 313

 Score =  164 bits (415), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 73/172 (42%), Positives = 123/172 (71%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D  + LL++RIVF+  Q++D  A L+ +QLL L+A++ +++I+L+INSPGG +TAGM IY
Sbjct: 89  DTTNMLLRQRIVFLGSQVDDMTADLVISQLLLLDAQDSERDITLFINSPGGSITAGMGIY 148

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M+  K  +ST C+G AASMG+ LL++G KG R+ +PN+++++HQP G   G+A+++  
Sbjct: 149 DAMKQCKADVSTVCLGLAASMGAFLLASGSKGKRYCMPNSKVMIHQPLGSAGGKATEMSI 208

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
             ++++  K +LN+I+ +  GK   E+E   DRD+ ++  EA ++G+VD V+
Sbjct: 209 RVREMMYHKIKLNKIFSRITGKPESEIEGDTDRDYFLNPWEAKEYGLVDAVI 260


>gi|269219684|ref|ZP_06163538.1| Clp protease [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269210926|gb|EEZ77266.1| Clp protease [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 225

 Score =  164 bits (415), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 88/192 (45%), Positives = 132/192 (68%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++RI+F+  Q++D  A  I AQLL LE+++P   I++
Sbjct: 28  VLPNFEERTPYGYKRQDPYAKLFEDRIIFLGVQVDDASADDIMAQLLVLESQDPDSPITM 87

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+IKP I T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 88  YINSPGGSFTALTAIYDTMQYIKPQIQTVCLGQAASAAAVLLAAGSPGRRLALPNARVLI 147

Query: 138 HQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           H+P+  G  GQASDI   A ++ ++   L +    + GK  +E++  + RD I++A++A 
Sbjct: 148 HEPAMEGMQGQASDIAIVADELERMNDWLCDTLSHHSGKPADEIKNDIKRDKILTANDAK 207

Query: 197 DWGVVDKVLMSR 208
           ++G+VD+VL SR
Sbjct: 208 EYGLVDQVLTSR 219


>gi|269795808|ref|YP_003315263.1| ATP-dependent Clp protease proteolytic subunit ClpP [Sanguibacter
           keddieii DSM 10542]
 gi|269097993|gb|ACZ22429.1| ATP-dependent Clp protease proteolytic subunit ClpP [Sanguibacter
           keddieii DSM 10542]
          Length = 212

 Score =  164 bits (414), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 113/170 (66%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           + S L+  R+V V  +I+D +AT +C+QLL L AE+P  ++ L I+SPGG V+AG+A+YD
Sbjct: 21  LTSGLMFRRVVVVGQEIDDDLATRVCSQLLLLSAEDPDADVVLLISSPGGSVSAGLAMYD 80

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            M+ I   +ST  +G AASMG  LLSAG +G RFALP+AR+L+HQ S G  G A DI   
Sbjct: 81  VMRLIPNDVSTVALGTAASMGQFLLSAGTRGKRFALPHARVLMHQGSAGLQGTAVDIAIQ 140

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           A+++   K+ +  +  ++ G+ Y+ VE+  DRD   +A EA D+G VD V
Sbjct: 141 AENLEHTKKVMLTLIAEHTGQPYDRVERDSDRDRWFTADEALDYGFVDAV 190


>gi|37523336|ref|NP_926713.1| ATP-dependent Clp protease-like protein [Gloeobacter violaceus PCC
           7421]
 gi|81708690|sp|Q7NEW1|CLPP2_GLOVI RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|35214340|dbj|BAC91708.1| clpP [Gloeobacter violaceus PCC 7421]
          Length = 218

 Score =  164 bits (414), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 79/167 (47%), Positives = 114/167 (68%), Gaps = 2/167 (1%)

Query: 41  KERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG--GVVTAGMAIYDTMQF 98
            ERIV++   I D +A L+ AQLL+LE+E+  K I +YINSPG  G  T+  A+YDTM+ 
Sbjct: 35  NERIVYLGTPINDVVAELLIAQLLYLESEDNAKPIEIYINSPGVAGFETSAFAVYDTMRH 94

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           ++ PI T C+G A    +LL++AG KG R +LPN+RI+L+QP GG  GQA+DI   AQ++
Sbjct: 95  VRMPIKTICLGLAGGFSALLMAAGTKGQRMSLPNSRIILYQPYGGARGQATDINIRAQEL 154

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           +  KR LN++   + GKT E+++K  +R   MS  EA  +G++DKVL
Sbjct: 155 LTTKRTLNQLLSIHTGKTVEQIDKDTERLFYMSPQEAVSYGLIDKVL 201


>gi|17028170|gb|AAL34333.1|L41144_1 ClpP [Brassica oleracea]
          Length = 279

 Score =  164 bits (414), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 73/172 (42%), Positives = 123/172 (71%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D  + LL++RIVF+  Q++D  A L+ +QLL L+A++ +++I+L+INSPGG +TAGM IY
Sbjct: 55  DTTNMLLRQRIVFLGSQVDDMTADLVISQLLLLDAQDSERDITLFINSPGGSITAGMGIY 114

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M+  K  +ST C+G AASMG+ LL++G KG R+ +PN+++++HQP G   G+A+++  
Sbjct: 115 DAMKQCKADVSTVCLGIAASMGAFLLASGSKGKRYCMPNSKVMIHQPLGSAGGKATEMSI 174

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
             ++++  K +LN+I+ +  GK   E+E   DRD+ ++  EA ++G+VD V+
Sbjct: 175 RVREMMYHKIKLNKIFSRITGKPESEIEGDTDRDYFLNPWEAKEYGLVDAVI 226


>gi|41408378|ref|NP_961214.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium avium
           subsp. paratuberculosis K-10]
 gi|118462339|ref|YP_880941.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium avium
           104]
 gi|254774530|ref|ZP_05216046.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium avium
           subsp. avium ATCC 25291]
 gi|67460506|sp|Q73XM9|CLPP1_MYCPA RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|41396734|gb|AAS04597.1| ClpP2 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118163626|gb|ABK64523.1| Clp protease [Mycobacterium avium 104]
          Length = 211

 Score =  164 bits (414), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 86/193 (44%), Positives = 130/193 (67%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +E ++ G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE+ +P ++I++
Sbjct: 12  ILPSFIEHSSFGIKESNPYNKLFEERIIFLGVQVDDASANDIMAQLLVLESLDPDRDITM 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++  I T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 72  YINSPGGGFTSLMAIYDTMQYVRADIQTVCLGQAASAAAVLLAAGTPGKRMALPNARVLI 131

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQPS  G   GQ SD+E  A +I +++  +     ++ GK    + K  DRD I++A EA
Sbjct: 132 HQPSLQGVIQGQFSDLEIQAAEIERMRTLMETTLARHTGKDAATIRKDTDRDKILTAEEA 191

Query: 196 CDWGVVDKVLMSR 208
            D+G++D VL  R
Sbjct: 192 KDYGIIDTVLEYR 204


>gi|240170931|ref|ZP_04749590.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           kansasii ATCC 12478]
          Length = 211

 Score =  164 bits (414), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 86/193 (44%), Positives = 130/193 (67%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +E ++ G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE+ +P ++I++
Sbjct: 12  ILPSFIEHSSFGVKESNPYNKLFEERIIFLGVQVDDASANDIMAQLLVLESLDPDRDITM 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++  I T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 72  YINSPGGGFTSLMAIYDTMQYVRADIQTVCLGQAASAAAVLLAAGTPGKRMALPNARVLI 131

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SG   GQ SD+E  A +I +++  +     ++ GK    + K  DRD I++A EA
Sbjct: 132 HQPSLSGVIQGQFSDLEIQAAEIERMRTLMETTLARHTGKDAAVIRKDTDRDKILTAEEA 191

Query: 196 CDWGVVDKVLMSR 208
            D+G++D VL  R
Sbjct: 192 KDYGIIDTVLEYR 204


>gi|118618991|ref|YP_907323.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           ulcerans Agy99]
 gi|183983781|ref|YP_001852072.1| ATP-dependent Clp protease proteolytic subunit ClpP2 [Mycobacterium
           marinum M]
 gi|118571101|gb|ABL05852.1| ATP-dependent CLP protease proteolytic subunit 2 ClpP2
           [Mycobacterium ulcerans Agy99]
 gi|183177107|gb|ACC42217.1| ATP-dependent CLP protease proteolytic subunit 2 ClpP2
           [Mycobacterium marinum M]
          Length = 211

 Score =  164 bits (414), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 86/193 (44%), Positives = 130/193 (67%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +E ++ G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE+ +P ++I++
Sbjct: 12  ILPSFIEHSSFGVKESNPYNKLFEERIIFLGVQVDDASANDIMAQLLVLESLDPDRDITM 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++  I T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 72  YINSPGGGFTSLMAIYDTMQYVRADIQTVCLGQAASAAAVLLAAGTPGKRMALPNARVLI 131

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SG   GQ SD+E  A +I +++  +     ++ GK    + K  DRD I++A EA
Sbjct: 132 HQPSLSGVIQGQFSDLEIQAAEIERMRTLMESTLARHTGKDPSVIRKDTDRDKILTAEEA 191

Query: 196 CDWGVVDKVLMSR 208
            D+G++D VL  R
Sbjct: 192 KDYGIIDTVLEYR 204


>gi|229494686|ref|ZP_04388444.1| Clp protease [Rhodococcus erythropolis SK121]
 gi|229318353|gb|EEN84216.1| Clp protease [Rhodococcus erythropolis SK121]
          Length = 202

 Score =  163 bits (413), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/190 (41%), Positives = 122/190 (64%), Gaps = 1/190 (0%)

Query: 26  TNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV 85
           T+ G R   +  RL ++R + +TG++ D MA  +C++L+ L   +P++++ LYINSPGG 
Sbjct: 7   TDTGYRDL-LTDRLFRQRTILLTGEVNDAMAERVCSELVLLATTDPKRDVVLYINSPGGS 65

Query: 86  VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS 145
           V AG+AIYDTM+ I   + T  MG AASMG +LL +G  G R +L ++RI++HQPS G  
Sbjct: 66  VFAGLAIYDTMKLIPNDVVTVAMGFAASMGQVLLCSGTHGKRNSLAHSRIMMHQPSAGIG 125

Query: 146 GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           G A DI   A+ +  +KR+  EI     G+T EE+E   DRD   +A +A ++G+VD+V+
Sbjct: 126 GTAVDIAIQAESLELMKRQSQEILAAETGRTVEEIETDSDRDRWFTAEQAREYGIVDRVV 185

Query: 206 MSRIDIEEKS 215
            S  +I  ++
Sbjct: 186 TSFAEIAPQA 195


>gi|226968697|ref|YP_002808657.1| protease subunit of the ATP-dependent Clp endopeptidase [Micromonas
           sp. RCC299]
 gi|226431175|gb|ACO55581.1| protease subunit of the ATP-dependent Clp endopeptidase [Micromonas
           sp. RCC299]
          Length = 200

 Score =  163 bits (413), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 70/171 (40%), Positives = 118/171 (69%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+   ++D +A  +   +L+L AE+ Q+ + LYINSPGG VTAG++++
Sbjct: 22  DLYNRLYRERVLFLGSALDDELANQLNGIMLYLSAEDSQRRLFLYINSPGGSVTAGLSVF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M ++   ++T  +G AASM S +L+ GE+G R ALP+ RI++HQP GG  GQAS+I  
Sbjct: 82  DIMNYVDAAVTTIGIGFAASMASFILAGGERGARLALPHCRIMIHQPQGGMEGQASEIVL 141

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
              +I+++++ +  +YV   G++   + + LDRD  +SA +A ++G+VD V
Sbjct: 142 EKDEIIRLRKLIGRLYVDLTGQSAATIARDLDRDKFLSARDAREYGLVDLV 192


>gi|255638490|gb|ACU19554.1| unknown [Glycine max]
          Length = 322

 Score =  163 bits (413), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 75/172 (43%), Positives = 120/172 (69%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D  + LL++RI+F+  Q++D  A  I +QLLFL+AE+ +K+I L+IN PGG VTAGM IY
Sbjct: 80  DATNMLLRQRIIFLGSQVDDMTADFIISQLLFLDAEDSKKDIKLFINPPGGSVTAGMGIY 139

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M+  K  +ST C+G AASMG+ +L++G KG R+ +PN+R+++HQP G   G+A+++  
Sbjct: 140 DAMKLCKADVSTVCLGLAASMGAFILASGTKGKRYCMPNSRVMIHQPLGTAGGKATEMSI 199

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
             +++   K ++N+I  +  GK  E++E   DRD+ M+  EA ++G+VD V+
Sbjct: 200 RIREMAYHKIKINKILSRITGKPEEQIELDTDRDNFMNPWEAKEYGLVDGVI 251


>gi|15827777|ref|NP_302040.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           leprae TN]
 gi|221230254|ref|YP_002503670.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           leprae Br4923]
 gi|14194506|sp|Q9CBY4|CLPP2_MYCLE RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|13093329|emb|CAC30429.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           leprae]
 gi|219933361|emb|CAR71573.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           leprae Br4923]
          Length = 214

 Score =  163 bits (413), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 86/193 (44%), Positives = 130/193 (67%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +E ++ G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE+ +P ++I++
Sbjct: 15  ILPSFIEHSSFGVKESNPYNKLFEERIIFLGVQVDDASANDIMAQLLVLESLDPDRDITM 74

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++  I T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 75  YINSPGGGFTSLMAIYDTMQYVRADIQTVCLGQAASAAAVLLAAGTPGKRMALPNARVLI 134

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQPS  G   GQ SD+E  A +I +++  +     ++ GK    + K  DRD I++A EA
Sbjct: 135 HQPSLAGVIQGQFSDLEIQAAEIERMRTLMETTLSRHTGKDAAVIRKDTDRDKILTAEEA 194

Query: 196 CDWGVVDKVLMSR 208
            D+G++D VL  R
Sbjct: 195 KDYGIIDTVLEYR 207


>gi|15609597|ref|NP_216976.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis H37Rv]
 gi|15841984|ref|NP_337021.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis CDC1551]
 gi|31793641|ref|NP_856134.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium bovis
           AF2122/97]
 gi|121638343|ref|YP_978567.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|148662295|ref|YP_001283818.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis H37Ra]
 gi|148823660|ref|YP_001288414.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis F11]
 gi|167969784|ref|ZP_02552061.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis H37Ra]
 gi|215404396|ref|ZP_03416577.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis 02_1987]
 gi|215412217|ref|ZP_03420979.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis 94_M4241A]
 gi|215427843|ref|ZP_03425762.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis T92]
 gi|215431406|ref|ZP_03429325.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis EAS054]
 gi|215446706|ref|ZP_03433458.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis T85]
 gi|218754192|ref|ZP_03532988.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis GM 1503]
 gi|219558457|ref|ZP_03537533.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis T17]
 gi|224990837|ref|YP_002645524.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|253798461|ref|YP_003031462.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis KZN 1435]
 gi|254232594|ref|ZP_04925921.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           (endopeptidase clp 2) [Mycobacterium tuberculosis C]
 gi|254365236|ref|ZP_04981282.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           (endopeptidase clp 2) [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254551508|ref|ZP_05141955.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260187467|ref|ZP_05764941.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis CPHL_A]
 gi|260201585|ref|ZP_05769076.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis T46]
 gi|260205764|ref|ZP_05773255.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis K85]
 gi|289443986|ref|ZP_06433730.1| clp protease [Mycobacterium tuberculosis T46]
 gi|289448103|ref|ZP_06437847.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis CPHL_A]
 gi|289553749|ref|ZP_06442959.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis KZN 605]
 gi|289570615|ref|ZP_06450842.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis T17]
 gi|289575154|ref|ZP_06455381.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis K85]
 gi|289746242|ref|ZP_06505620.1| ATP-dependent Clp protease proteolytic subunit ClpP2 [Mycobacterium
           tuberculosis 02_1987]
 gi|289751066|ref|ZP_06510444.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis T92]
 gi|289754568|ref|ZP_06513946.1| ATP-dependent Clp protease proteolytic subunit ClpP2 [Mycobacterium
           tuberculosis EAS054]
 gi|289758592|ref|ZP_06517970.1| endopeptidase Clp 2 [Mycobacterium tuberculosis T85]
 gi|289762629|ref|ZP_06522007.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           (endopeptidase clp 2) [Mycobacterium tuberculosis GM
           1503]
 gi|294994432|ref|ZP_06800123.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis 210]
 gi|297635066|ref|ZP_06952846.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis KZN 4207]
 gi|297732057|ref|ZP_06961175.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis KZN R506]
 gi|298525938|ref|ZP_07013347.1| ATP-dependent Clp protease proteolytic subunit 2 [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306776730|ref|ZP_07415067.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis SUMu001]
 gi|306780503|ref|ZP_07418840.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis SUMu002]
 gi|306785255|ref|ZP_07423577.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis SUMu003]
 gi|306789614|ref|ZP_07427936.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis SUMu004]
 gi|306793941|ref|ZP_07432243.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis SUMu005]
 gi|306798335|ref|ZP_07436637.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis SUMu006]
 gi|306804211|ref|ZP_07440879.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis SUMu008]
 gi|306808781|ref|ZP_07445449.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis SUMu007]
 gi|306968613|ref|ZP_07481274.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis SUMu009]
 gi|306972840|ref|ZP_07485501.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis SUMu010]
 gi|307080546|ref|ZP_07489716.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis SUMu011]
 gi|307085144|ref|ZP_07494257.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis SUMu012]
 gi|313659393|ref|ZP_07816273.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis KZN V2475]
 gi|54036853|sp|P63784|CLPP2_MYCBO RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|54040891|sp|P63783|CLPP2_MYCTU RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|2791500|emb|CAA16037.1| PROBABLE ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 2 CLPP2
           (ENDOPEPTIDASE CLP 2) [Mycobacterium tuberculosis H37Rv]
 gi|13882258|gb|AAK46835.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mycobacterium
           tuberculosis CDC1551]
 gi|31619234|emb|CAD97348.1| PROBABLE ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 2 CLPP2
           (ENDOPEPTIDASE CLP 2) [Mycobacterium bovis AF2122/97]
 gi|121493991|emb|CAL72468.1| Probable ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|124601653|gb|EAY60663.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           (endopeptidase clp 2) [Mycobacterium tuberculosis C]
 gi|134150750|gb|EBA42795.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           (endopeptidase clp 2) [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148506447|gb|ABQ74256.1| ATP-dependent Clp protease proteolytic subunit ClpP2 [Mycobacterium
           tuberculosis H37Ra]
 gi|148722187|gb|ABR06812.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis F11]
 gi|224773950|dbj|BAH26756.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|253319964|gb|ACT24567.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis KZN 1435]
 gi|289416905|gb|EFD14145.1| clp protease [Mycobacterium tuberculosis T46]
 gi|289421061|gb|EFD18262.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis CPHL_A]
 gi|289438381|gb|EFD20874.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis KZN 605]
 gi|289539585|gb|EFD44163.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis K85]
 gi|289544369|gb|EFD48017.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis T17]
 gi|289686770|gb|EFD54258.1| ATP-dependent Clp protease proteolytic subunit ClpP2 [Mycobacterium
           tuberculosis 02_1987]
 gi|289691653|gb|EFD59082.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis T92]
 gi|289695155|gb|EFD62584.1| ATP-dependent Clp protease proteolytic subunit ClpP2 [Mycobacterium
           tuberculosis EAS054]
 gi|289710135|gb|EFD74151.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           (endopeptidase clp 2) [Mycobacterium tuberculosis GM
           1503]
 gi|289714156|gb|EFD78168.1| endopeptidase Clp 2 [Mycobacterium tuberculosis T85]
 gi|298495732|gb|EFI31026.1| ATP-dependent Clp protease proteolytic subunit 2 [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308214890|gb|EFO74289.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis SUMu001]
 gi|308326651|gb|EFP15502.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis SUMu002]
 gi|308330077|gb|EFP18928.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis SUMu003]
 gi|308333917|gb|EFP22768.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis SUMu004]
 gi|308337720|gb|EFP26571.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis SUMu005]
 gi|308341401|gb|EFP30252.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis SUMu006]
 gi|308344887|gb|EFP33738.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis SUMu007]
 gi|308349198|gb|EFP38049.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis SUMu008]
 gi|308353819|gb|EFP42670.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis SUMu009]
 gi|308357768|gb|EFP46619.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis SUMu010]
 gi|308361713|gb|EFP50564.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis SUMu011]
 gi|308365323|gb|EFP54174.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis SUMu012]
 gi|323718966|gb|EGB28116.1| ATP-dependent Clp protease proteolytic subunit 2 ClpP2
           [Mycobacterium tuberculosis CDC1551A]
 gi|326904074|gb|EGE51007.1| ATP-dependent Clp protease proteolytic subunit 2 ClpP2
           [Mycobacterium tuberculosis W-148]
 gi|328458229|gb|AEB03652.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis KZN 4207]
          Length = 214

 Score =  163 bits (412), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 86/193 (44%), Positives = 130/193 (67%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +E ++ G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE+ +P ++I++
Sbjct: 15  ILPSFIEHSSFGVKESNPYNKLFEERIIFLGVQVDDASANDIMAQLLVLESLDPDRDITM 74

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++  I T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 75  YINSPGGGFTSLMAIYDTMQYVRADIQTVCLGQAASAAAVLLAAGTPGKRMALPNARVLI 134

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SG   GQ SD+E  A +I +++  +     ++ GK    + K  DRD I++A EA
Sbjct: 135 HQPSLSGVIQGQFSDLEIQAAEIERMRTLMETTLARHTGKDAGVIRKDTDRDKILTAEEA 194

Query: 196 CDWGVVDKVLMSR 208
            D+G++D VL  R
Sbjct: 195 KDYGIIDTVLEYR 207


>gi|296170472|ref|ZP_06852060.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295894943|gb|EFG74664.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 214

 Score =  163 bits (412), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 86/193 (44%), Positives = 130/193 (67%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +E ++ G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE+ +P ++I++
Sbjct: 15  ILPSFIEHSSFGVKESNPYNKLFEERIIFLGVQVDDASANDIMAQLLVLESLDPDRDITM 74

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++  I T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 75  YINSPGGGFTSLMAIYDTMQYVRADIQTVCLGQAASAAAVLLAAGTPGKRMALPNARVLI 134

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQPS  G   GQ SD+E  A +I +++  +     ++ GK    V K  DRD I++A EA
Sbjct: 135 HQPSLQGVIQGQFSDLEIQAAEIERMRTLMETTLARHTGKDAATVRKDTDRDKILTADEA 194

Query: 196 CDWGVVDKVLMSR 208
            ++G++D VL  R
Sbjct: 195 KEYGIIDTVLEYR 207


>gi|213622512|ref|ZP_03375295.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 95

 Score =  163 bits (412), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 72/95 (75%), Positives = 86/95 (90%)

Query: 41  KERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           KER++F+TGQ+EDHMA LI AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIK
Sbjct: 1   KERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIK 60

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           P +ST CMGQAASMG+ LL+AG KG RF LPN+R+
Sbjct: 61  PDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRV 95


>gi|154487068|ref|ZP_02028475.1| hypothetical protein BIFADO_00906 [Bifidobacterium adolescentis
           L2-32]
 gi|154084931|gb|EDN83976.1| hypothetical protein BIFADO_00906 [Bifidobacterium adolescentis
           L2-32]
          Length = 233

 Score =  163 bits (412), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 86/193 (44%), Positives = 136/193 (70%), Gaps = 3/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y+RL ++RI+F+  Q++D  A  I AQLL LE+++P +++ +
Sbjct: 41  VLPQFEEKTPYGYKRQDPYTRLFEDRIIFMGVQVDDTSADDIMAQLLVLESQDPNRDVMM 100

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL+AG KG R  LPNAR+L+
Sbjct: 101 YINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLAAGAKGKRLMLPNARVLI 160

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+   GF G+A++IE  A+++++++  L     K+ G+  E++ K ++ D  ++A EA
Sbjct: 161 HQPAIDQGF-GKATEIEIQAKEMLRMREWLENTLAKHTGRDIEKIRKDIEVDTFLTAQEA 219

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD+VL  R
Sbjct: 220 KEYGIVDEVLEHR 232


>gi|119025606|ref|YP_909451.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118765190|dbj|BAF39369.1| ATP-dependent Clp protease proteolytic subunit 1 [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 233

 Score =  163 bits (412), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 86/193 (44%), Positives = 136/193 (70%), Gaps = 3/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y+RL ++RI+F+  Q++D  A  I AQLL LE+++P +++ +
Sbjct: 41  VLPQFEEKTPYGYKRQDPYTRLFEDRIIFMGVQVDDTSADDIMAQLLVLESQDPNRDVMM 100

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL+AG KG R  LPNAR+L+
Sbjct: 101 YINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLAAGAKGKRLMLPNARVLI 160

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+   GF G+A++IE  A+++++++  L     K+ G+  E++ K ++ D  ++A EA
Sbjct: 161 HQPAIDQGF-GKATEIEIQAKEMLRMREWLENTLAKHTGRDIEKIRKDIEVDTFLTAQEA 219

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD+VL  R
Sbjct: 220 KEYGIVDEVLEHR 232


>gi|300859021|ref|YP_003784004.1| hypothetical protein cpfrc_01604 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686475|gb|ADK29397.1| hypothetical protein cpfrc_01604 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206720|gb|ADL11062.1| ATP-dependent Clp protease proteolytic subunit 1 [Corynebacterium
           pseudotuberculosis C231]
 gi|302331274|gb|ADL21468.1| ATP-dependent Clp protease proteolytic subunit 1 [Corynebacterium
           pseudotuberculosis 1002]
          Length = 209

 Score =  163 bits (412), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 82/192 (42%), Positives = 132/192 (68%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +E +  G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE  +P ++I++
Sbjct: 14  VLPSFIEHSTYGTKETNPYAKLFEERIIFLGTQVDDTSANDIMAQLLVLEGLDPDRDITM 73

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++P + T C+GQAAS  ++LL+AG  G R  LPN+R+L+
Sbjct: 74  YINSPGGSFTSLMAIYDTMQYVRPDVRTVCLGQAASAAAVLLAAGAPGKRACLPNSRVLI 133

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP + G  GQ SD+E  A++I +++  + +   ++ G+T E+V    DRD I++A EA 
Sbjct: 134 HQPATQGTQGQVSDLEIQAKEIERMRTLMEQTLSRHTGRTPEQVRIDTDRDKILTAQEAV 193

Query: 197 DWGVVDKVLMSR 208
           ++G++D+V   R
Sbjct: 194 EYGIIDQVFDYR 205


>gi|116786219|gb|ABK24027.1| unknown [Picea sitchensis]
          Length = 317

 Score =  162 bits (411), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 75/172 (43%), Positives = 114/172 (66%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+   LL++RIVF+   ++D +A  I +QLL L+A+NP K+I L+IN PGG + A M I+
Sbjct: 104 DVMGLLLRQRIVFLGSNMDDFVADAIISQLLLLDAQNPNKDIRLFINCPGGSINAAMGIF 163

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           DT+Q  +  +ST   G AAS  S++L+ G KG R A+PN RI++HQP GG SG A D+E 
Sbjct: 164 DTIQLCRADVSTIAFGLAASTASIVLAGGSKGKRLAMPNTRIMMHQPLGGASGSAIDVEI 223

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            A++I+  K  +  I  +  G++ E+V+  +DRD  MS  EA ++G++D V+
Sbjct: 224 QAKEIMYHKSNVTRIISERTGRSTEQVDNDMDRDRYMSPMEAVEYGLIDGVI 275


>gi|54023139|ref|YP_117381.1| putative Clp protease proteolytic subunit [Nocardia farcinica IFM
           10152]
 gi|67460460|sp|Q5Z0M4|CLPP1_NOCFA RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|54014647|dbj|BAD56017.1| putative Clp protease proteolytic subunit [Nocardia farcinica IFM
           10152]
          Length = 197

 Score =  162 bits (411), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 78/191 (40%), Positives = 125/191 (65%), Gaps = 1/191 (0%)

Query: 19  VPMVVEQTNRG-ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +P V+ Q  RG ER  DIYS LL ERIV++   I+  +A  + AQLL LE+E+P +EI+ 
Sbjct: 6   IPNVIAQHPRGGERITDIYSHLLAERIVYLGTPIDSGVANALIAQLLHLESESPDQEINF 65

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YIN  GG + + +A+YDTMQ I  P+ T C+GQA ++G++LL+ G  G R  LP+AR++L
Sbjct: 66  YINCEGGDLPSMLAVYDTMQHIGAPVHTTCVGQAIAVGAVLLAGGAPGQRAMLPHARVVL 125

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP+    G   D+   A ++V+++  +  I  ++ G++ E++ +  DRD + +A+ A +
Sbjct: 126 HQPAARGQGPIPDLILQADELVRMRSEIEAILSRHTGRSPEQLREDTDRDRVFTATAALE 185

Query: 198 WGVVDKVLMSR 208
           +G++D VL  R
Sbjct: 186 YGLIDTVLSPR 196


>gi|308276963|gb|ADO26862.1| ATP-dependent Clp protease proteolytic subunit 1 [Corynebacterium
           pseudotuberculosis I19]
          Length = 209

 Score =  162 bits (411), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 82/192 (42%), Positives = 131/192 (68%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +E    G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE  +P ++I++
Sbjct: 14  VLPSFIEHATYGTKETNPYAKLFEERIIFLGTQVDDTSANDIMAQLLVLEGLDPDRDITM 73

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++P + T C+GQAAS  ++LL+AG  G R  LPN+R+L+
Sbjct: 74  YINSPGGSFTSLMAIYDTMQYVRPDVRTVCLGQAASAAAVLLAAGAPGKRACLPNSRVLI 133

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP + G  GQ SD+E  A++I +++  + +   ++ G+T E+V    DRD I++A EA 
Sbjct: 134 HQPATQGTQGQVSDLEIQAKEIERMRTLMEQTLSRHTGRTPEQVRIDTDRDKILTAQEAV 193

Query: 197 DWGVVDKVLMSR 208
           ++G++D+V   R
Sbjct: 194 EYGIIDQVFDYR 205


>gi|225352780|ref|ZP_03743803.1| hypothetical protein BIFPSEUDO_04410 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156387|gb|EEG69956.1| hypothetical protein BIFPSEUDO_04410 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 233

 Score =  162 bits (410), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 86/193 (44%), Positives = 136/193 (70%), Gaps = 3/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y+RL ++RI+F+  Q++D  A  I AQLL LE+++P +++ +
Sbjct: 41  VLPQFEEKTPYGFKRQDPYTRLFEDRIIFMGVQVDDTSADDIMAQLLVLESQDPNRDVMM 100

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL+AG KG R  LPNAR+L+
Sbjct: 101 YINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLAAGAKGKRLMLPNARVLI 160

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+   GF G+A++IE  A+++++++  L     K+ G+  E++ K ++ D  ++A EA
Sbjct: 161 HQPAIDQGF-GKATEIEIQAKEMLRMREWLENTLAKHTGRDVEKIRKDIEVDTFLTAPEA 219

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD+VL  R
Sbjct: 220 KEYGIVDEVLEHR 232


>gi|113170419|ref|YP_717211.1| ClpP [Ostreococcus tauri]
 gi|122228950|sp|Q0P3P4|CLPP_OSTTA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|112806826|emb|CAL36333.1| ClpP [Ostreococcus tauri]
          Length = 200

 Score =  162 bits (410), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 70/171 (40%), Positives = 117/171 (68%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+   ++D +A  +   +L+L AE+  + + LYINSPGG VTAG++++
Sbjct: 22  DLYNRLYRERVLFLGSGLDDELANQLNGIMLYLSAEDASRSLFLYINSPGGSVTAGLSVF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M +++  ++T  +G AASM S +L+ GE+G R ALP+ R+++HQP GG  GQAS++  
Sbjct: 82  DIMNYVQASVTTIGIGFAASMASFILAGGERGSRIALPHCRVMIHQPQGGMEGQASEVVL 141

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             ++IV+++R +  +YV   G+    +   LDRD  +SA EA ++G+VD V
Sbjct: 142 EKEEIVRLRRLIGRLYVDLTGQPLSTIANDLDRDKYLSAREAREYGLVDLV 192


>gi|212716951|ref|ZP_03325079.1| hypothetical protein BIFCAT_01895 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660236|gb|EEB20811.1| hypothetical protein BIFCAT_01895 [Bifidobacterium catenulatum DSM
           16992]
          Length = 233

 Score =  162 bits (410), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 86/193 (44%), Positives = 136/193 (70%), Gaps = 3/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y+RL ++RI+F+  Q++D  A  I AQLL LE+++P +++ +
Sbjct: 41  VLPQFEEKTPYGFKRQDPYTRLFEDRIIFMGVQVDDTSADDIMAQLLVLESQDPNRDVMM 100

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL+AG KG R  LPNAR+L+
Sbjct: 101 YINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLAAGAKGKRLMLPNARVLI 160

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+   GF G+A++IE  A+++++++  L     K+ G+  E++ K ++ D  ++A EA
Sbjct: 161 HQPAIDQGF-GKATEIEIQAKEMLRMREWLENTLAKHTGRDVEKIRKDIEVDTFLTAPEA 219

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD+VL  R
Sbjct: 220 KEYGIVDEVLEHR 232


>gi|111018525|ref|YP_701497.1| endopeptidase Clp [Rhodococcus jostii RHA1]
 gi|226360644|ref|YP_002778422.1| ATP-dependent Clp protease proteolytic subunit [Rhodococcus opacus
           B4]
 gi|116243124|sp|Q0SGJ7|CLPP3_RHOSR RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
           AltName: Full=Endopeptidase Clp 3
 gi|110818055|gb|ABG93339.1| endopeptidase Clp [Rhodococcus jostii RHA1]
 gi|226239129|dbj|BAH49477.1| ATP-dependent Clp protease proteolytic subunit [Rhodococcus opacus
           B4]
          Length = 202

 Score =  162 bits (410), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 76/174 (43%), Positives = 115/174 (66%)

Query: 38  RLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97
           RL ++R + +TG+++D MA   C++L+ L A +P+++I LYINSPGG V AG+AIYDTM+
Sbjct: 18  RLFRQRTILLTGEVDDAMAERACSELVLLAAADPKRDIVLYINSPGGSVFAGLAIYDTMK 77

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
            +   + T  MG AASMG +LL +G  G R +L ++RI++HQPS G  G A DI   A+ 
Sbjct: 78  LVPNDVVTVAMGFAASMGQVLLCSGTHGKRISLAHSRIMMHQPSAGIGGTAVDIAIQAES 137

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           + ++KR+  EI     G   E++ +  DRD   +A EA D+G+VD+V+ S  +I
Sbjct: 138 LERMKRQSQEILAAETGHPVEQIAEDSDRDRWFTADEARDYGIVDRVVSSFAEI 191


>gi|145223176|ref|YP_001133854.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           gilvum PYR-GCK]
 gi|315443633|ref|YP_004076512.1| ATP-dependent Clp protease proteolytic subunit ClpP [Mycobacterium
           sp. Spyr1]
 gi|145215662|gb|ABP45066.1| ATP-dependent Clp protease proteolytic subunit ClpP [Mycobacterium
           gilvum PYR-GCK]
 gi|315261936|gb|ADT98677.1| ATP-dependent Clp protease proteolytic subunit ClpP [Mycobacterium
           sp. Spyr1]
          Length = 215

 Score =  162 bits (410), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 85/193 (44%), Positives = 131/193 (67%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +E ++ G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE+ +P ++I++
Sbjct: 16  ILPSFIEHSSFGVKESNPYNKLFEERIIFLGVQVDDASANDIMAQLLVLESLDPDRDITM 75

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++  I T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 76  YINSPGGSFTSLMAIYDTMQYVRADIQTVCLGQAASAAAVLLAAGTPGKRMALPNARVLI 135

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+  G   GQ SD+E  A +I +++  + E    + GK  + + K  DRD I++A+ A
Sbjct: 136 HQPALGGVIQGQFSDLEIQAAEIERMRTLMEETLSLHTGKPADVIRKDTDRDKILTAAAA 195

Query: 196 CDWGVVDKVLMSR 208
            D+G++D VL  R
Sbjct: 196 KDYGIIDTVLEYR 208


>gi|153805564|ref|YP_001382140.1| ATP-dependent Clp protease proteolytic subunit [Leptosira
           terrestris]
 gi|160380555|sp|A6YG63|CLPP_LEPTE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|134270095|gb|ABO69284.1| proteolytic subunit 2 of clp protease [Leptosira terrestris]
          Length = 196

 Score =  162 bits (409), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 72/171 (42%), Positives = 113/171 (66%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y  L +ER++ + G + D     I + L++L   +  KE  +YINSPGG VT+G+AIY
Sbjct: 22  DLYHCLYQERLIVICGDLNDEAVNQIVSVLIYLSTRDDSKEFFIYINSPGGSVTSGIAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M+F   P++T  +G +ASM S +L+ G+ G R A P++RI++HQP GG  GQ+S+I  
Sbjct: 82  DAMRFNNTPVNTIAVGISASMASFILAGGDIGKRLAFPHSRIMIHQPEGGSEGQSSEIVH 141

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            AQ++V+I+R++  IY +  G+  + + + +DRD  MSA EA  +G+VD V
Sbjct: 142 EAQEVVRIRRQVARIYAQRTGQPLDTIARDMDRDQFMSAREAKTYGIVDLV 192


>gi|229915410|gb|ACQ90755.1| proteolytic subunit 2 of clp protease [Oocystis solitaria]
          Length = 204

 Score =  162 bits (409), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 71/183 (38%), Positives = 125/183 (68%), Gaps = 3/183 (1%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+++RL +ER++F+   ++D ++  +   +L+L AE   K+I ++INS GG VT G+A+Y
Sbjct: 22  DLFNRLYRERLLFLCQDLDDEVSNQLIGIMLYLNAEEKFKDIYIFINSLGGSVTCGIAVY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M F++  +ST C+G AASM S +L+ G++G R ALP+ RI++HQP GG  GQAS++  
Sbjct: 82  DVMNFVEADVSTICVGTAASMASFVLAGGKRGKRIALPHTRIMIHQPEGGGQGQASEVLS 141

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
            ++++ +++R++ +IY +   ++   + + +DRD  MSA EA ++G+VD+V    +DI+ 
Sbjct: 142 ESEEVRRLRRQVGQIYAEQTSQSLNRISRDMDRDQFMSAREAKEYGLVDQVA---VDIKW 198

Query: 214 KSK 216
            S 
Sbjct: 199 SSN 201


>gi|254444482|ref|ZP_05057958.1| Clp protease [Verrucomicrobiae bacterium DG1235]
 gi|198258790|gb|EDY83098.1| Clp protease [Verrucomicrobiae bacterium DG1235]
          Length = 192

 Score =  161 bits (408), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 81/191 (42%), Positives = 119/191 (62%), Gaps = 2/191 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P   E+T     +  I  + L+ER +F+ GQ+ D  A  +  +L +LEA+ P K+I+ Y
Sbjct: 1   MPEKDEKTPDSPVASQIQKKFLEERKIFLWGQVSDESAKDVTEKLFYLEADAPGKDITFY 60

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           IN+PGG VTAG+AIYDT++ I   +     G AASMGS+LLSA +KG R   P+A++L+H
Sbjct: 61  INTPGGSVTAGLAIYDTIKLISSEVIVVVTGLAASMGSILLSAPKKGNRLLYPHAKVLIH 120

Query: 139 QP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           QP   G F G A DI   AQD+ K +  LN I     G+  +++++  DRD  MSA EA 
Sbjct: 121 QPLIGGQFQGPAVDIHIFAQDMEKTREELNRILADASGQPLDKIKEDTDRDFYMSAQEAI 180

Query: 197 DWGVVDKVLMS 207
           D+G+ D+++ S
Sbjct: 181 DYGLADRIIES 191


>gi|318060402|ref|ZP_07979125.1| ATP-dependent Clp protease, protease subunit [Streptomyces sp.
           SA3_actG]
 gi|318078402|ref|ZP_07985734.1| ATP-dependent Clp protease, protease subunit [Streptomyces sp.
           SA3_actF]
          Length = 212

 Score =  161 bits (408), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 79/189 (41%), Positives = 122/189 (64%), Gaps = 2/189 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T+ G R+ D YSRLL+ RIVF+   ++D  A  +  QL+ LE  +P ++ISL
Sbjct: 13  VLPEFTERTSYGTRTLDPYSRLLEGRIVFLGTPLDDTAAADLAVQLMHLEYADPDQDISL 72

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N PGG  TA  A+YDTM+ +   ++T+C+GQA S+G++LL+AG  G R ALP ARI+L
Sbjct: 73  YLNCPGGEFTALTAVYDTMRHLSCDVATYCLGQAVSVGAVLLAAGAPGKRAALPGARIVL 132

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
            QP    G  GQ SD+   A+++ + +R    +     G+T EEV   ++RD +++A EA
Sbjct: 133 RQPELPEGMRGQPSDLAVWAEELARERRTTERLLAAGTGRTEEEVRGDMERDLVLTAEEA 192

Query: 196 CDWGVVDKV 204
             +G+VD +
Sbjct: 193 VTYGIVDAL 201


>gi|288921296|ref|ZP_06415579.1| Endopeptidase Clp [Frankia sp. EUN1f]
 gi|288347327|gb|EFC81621.1| Endopeptidase Clp [Frankia sp. EUN1f]
          Length = 275

 Score =  161 bits (408), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 82/177 (46%), Positives = 116/177 (65%)

Query: 29  GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTA 88
           G     ++ RLL  RIVF+   +ED MA  ICA+LL L A++P  +I LYINSPGG V+A
Sbjct: 43  GPSEEHVFQRLLANRIVFLGSAVEDAMANAICAKLLLLAADDPTADIYLYINSPGGSVSA 102

Query: 89  GMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQA 148
           GMAIYDTMQ++   ++T  +G A SM  +LL+AG  G R+ALP +++L+HQPSGG  G +
Sbjct: 103 GMAIYDTMQYVSNDVATVALGLAGSMAQVLLTAGAPGKRYALPRSQVLMHQPSGGIGGGS 162

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           SDI   A  ++  KR L ++   + G+  E +E   DRD   +A +A ++G+VD VL
Sbjct: 163 SDIAIQATQMLATKRLLQQLIALHSGQPVERIEADADRDRWFTAEQAREYGLVDHVL 219


>gi|229822178|ref|YP_002883704.1| Endopeptidase Clp [Beutenbergia cavernae DSM 12333]
 gi|229568091|gb|ACQ81942.1| Endopeptidase Clp [Beutenbergia cavernae DSM 12333]
          Length = 197

 Score =  161 bits (407), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 80/192 (41%), Positives = 129/192 (67%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVE+    ER+ D++SRLL +RIV++   I++ +A ++ AQL+ LE++NP   I LY
Sbjct: 6   IPYVVEKRPGSERAMDVFSRLLSDRIVYLGTAIDEGVANVLIAQLIHLESDNPDLPIHLY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG + A +++YD MQ+++PP++T C+GQAA+  +LLL+ G KG R  L + R++LH
Sbjct: 66  INSPGGDIPATLSVYDAMQYVRPPVATTCLGQAATTAALLLAGGAKGQRSILSHGRVVLH 125

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP+G   G   D+   A +IV+++ +L E+   + G++ E + +  DR+ I+ A  A  +
Sbjct: 126 QPTGQGRGTVPDLILAADEIVRVRSQLEEVLSAHTGQSVETLRRDTDRELILDAERAKAY 185

Query: 199 GVVDKVLMSRID 210
           GVVD +L  R D
Sbjct: 186 GVVDHILTERPD 197


>gi|49574608|ref|NP_848084.2| ATP-dependent Clp protease proteolytic subunit [Adiantum
           capillus-veneris]
 gi|68565049|sp|Q85FJ8|CLPP_ADICA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|48476019|gb|AAP29415.2| ATP-dependent Clp protease proteolytic subunit [Adiantum
           capillus-veneris]
          Length = 200

 Score =  161 bits (407), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 72/177 (40%), Positives = 121/177 (68%), Gaps = 1/177 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  Q++D +A  +   +++L +E+  K++ LY+NSPGG V AG+++Y
Sbjct: 22  DVYNRLYRERLLFLGQQVDDEIANQLIGIMMYLNSEDQAKDMYLYVNSPGGAVLAGISVY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           D MQF+ P + T CMG AASMGS +L+ GE   R ALP+AR+++HQP S  + GQA +  
Sbjct: 82  DAMQFVVPDVHTICMGLAASMGSFILAGGEITRRIALPHARVMIHQPASSYYDGQAGECV 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
             A++++K++  + ++Y +  GK    + + ++RD  +SA EA D+GVVD V +  +
Sbjct: 142 MEAEEVLKLRDCITKVYAQRTGKPLWLISEDMERDVFLSAEEAQDYGVVDLVAVENV 198


>gi|22711907|ref|NP_683797.1| ATP-dependent Clp protease proteolytic subunit [Chaetosphaeridium
           globosum]
 gi|25008304|sp|Q8M9Y9|CLPP_CHAGL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|22416911|gb|AAM96511.1| proteolytic subunit 2 of clp protease [Chaetosphaeridium globosum]
          Length = 201

 Score =  161 bits (407), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 77/183 (42%), Positives = 122/183 (66%), Gaps = 4/183 (2%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ERI+F+   +   +A  I   +L+L  ++  K++ LYINSPGG V  G+AIY
Sbjct: 22  DLYNRLYRERILFLGQTVNYEIANQIIGLMLYLNGDDKSKDMYLYINSPGGAVVPGIAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG-FSGQASDIE 152
           DTMQF++P I T CMG AASMGS +L+ GE   R ALP+AR+++HQPS   +  QA ++ 
Sbjct: 82  DTMQFVEPEIRTICMGVAASMGSFILTGGEITKRIALPHARVMIHQPSSSYYKDQAGELI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
             A++++K++  + ++YV+  GK    + + ++RD  MSA EA ++G+VD V +   D++
Sbjct: 142 MEAEEVLKLRDCITKVYVQRTGKPISVISEDMERDVFMSAKEAKEYGIVDLVAL---DVD 198

Query: 213 EKS 215
             S
Sbjct: 199 SNS 201


>gi|260366281|ref|ZP_05778737.1| endopeptidase Clp [Vibrio parahaemolyticus K5030]
 gi|308114048|gb|EFO51588.1| endopeptidase Clp [Vibrio parahaemolyticus K5030]
          Length = 127

 Score =  161 bits (407), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 71/125 (56%), Positives = 96/125 (76%)

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           G VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+ G  G R+ LPN+R+++HQP GG
Sbjct: 1   GSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAAGKRYVLPNSRVMIHQPLGG 60

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
           F GQASDI+ HAQ+I+ IK++LN +  ++ G+  E +E+  DRD+ MSA +A ++G+VD 
Sbjct: 61  FQGQASDIQIHAQEILTIKQKLNNLLAEHTGQPLEVIERDTDRDNFMSAEQAVEYGIVDA 120

Query: 204 VLMSR 208
           VL  R
Sbjct: 121 VLSHR 125


>gi|302517758|ref|ZP_07270100.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sp. SPB78]
 gi|302426653|gb|EFK98468.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sp. SPB78]
          Length = 212

 Score =  161 bits (407), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 79/189 (41%), Positives = 122/189 (64%), Gaps = 2/189 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T+ G R+ D YSRLL+ RIVF+   ++D  A  +  QL+ LE  +P ++ISL
Sbjct: 13  VLPEFTERTSYGTRTLDPYSRLLEGRIVFLGTPLDDTAAADLAVQLMHLEYADPDQDISL 72

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N PGG  TA  A+YDTM+ +   ++T+C+GQA S+G++LL+AG  G R ALP ARI+L
Sbjct: 73  YLNCPGGEFTALTAVYDTMRHLSCDVATYCLGQAVSVGAVLLAAGAPGKRAALPGARIVL 132

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
            QP    G  GQ SD+   A+++ + +R    +     G+T EEV   ++RD +++A EA
Sbjct: 133 RQPELPEGVRGQPSDLAVWAEELARERRTTERLLAAGTGRTEEEVRGDMERDLVLTAEEA 192

Query: 196 CDWGVVDKV 204
             +G+VD +
Sbjct: 193 VTYGIVDAL 201


>gi|237785950|ref|YP_002906655.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758862|gb|ACR18112.1| ATP-dependent Clp protease proteolytic subunit 2 [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 228

 Score =  161 bits (407), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 82/192 (42%), Positives = 130/192 (67%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE ++ G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE  +P ++I++
Sbjct: 31  ILPSFVEHSSFGAKESNPYNKLFEERIIFLGTQVDDASANDIMAQLLVLEGLDPDRDITM 90

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++P + T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 91  YINSPGGSFTSLMAIYDTMQYVRPDVVTVCLGQAASAAAVLLAAGTPGKRAALPNARVLI 150

Query: 138 HQPSG-GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+  G  GQ SD+E  A +I +++  +     ++ G + E++    DRD I++A  A 
Sbjct: 151 HQPATQGTQGQVSDLEIQAAEIERMRTLMETTLARHTGVSAEQIRIDTDRDKILTAEGAK 210

Query: 197 DWGVVDKVLMSR 208
           ++G++D+V   R
Sbjct: 211 EYGIIDQVFDYR 222


>gi|298243373|ref|ZP_06967180.1| Endopeptidase Clp [Ktedonobacter racemifer DSM 44963]
 gi|297556427|gb|EFH90291.1| Endopeptidase Clp [Ktedonobacter racemifer DSM 44963]
          Length = 279

 Score =  161 bits (407), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 80/178 (44%), Positives = 122/178 (68%), Gaps = 3/178 (1%)

Query: 31  RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---GVVT 87
           R  ++ SRLLKERIVFV   I D +A  +   LL+LE+++  KEISLYIN  G   G + 
Sbjct: 95  RINEVPSRLLKERIVFVPPFINDEIANYLIGVLLYLESDDASKEISLYINCHGSLDGNLY 154

Query: 88  AGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQ 147
            G+ IYDTM+++KP I+T C+G A  + ++LL+AG KG RF LP+++++LHQP     GQ
Sbjct: 155 YGLGIYDTMRYLKPEITTVCLGAAQGVAAVLLAAGTKGKRFILPHSQVVLHQPLSSVKGQ 214

Query: 148 ASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           ASDIE  A ++++ ++ L EI  ++ GK+ ++V +  DR   M+A EA ++G+VD+V+
Sbjct: 215 ASDIEIRAHELLRQRQSLYEILAEHTGKSVDQVMQDADRRRYMTAKEAVEYGLVDEVI 272


>gi|239932647|ref|ZP_04689600.1| ATP-dependent Clp protease [Streptomyces ghanaensis ATCC 14672]
 gi|291441006|ref|ZP_06580396.1| ATP-dependent Clp protease [Streptomyces ghanaensis ATCC 14672]
 gi|291343901|gb|EFE70857.1| ATP-dependent Clp protease [Streptomyces ghanaensis ATCC 14672]
          Length = 211

 Score =  161 bits (407), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 76/193 (39%), Positives = 123/193 (63%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P + E+T  G R+ D Y++LL+ERIV +   I++  A  + AQ L+LE   P ++ISL
Sbjct: 9   VLPELTERTASGHRTTDPYAKLLQERIVLLGTPIDETSANDVMAQFLYLEHRAPDRDISL 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG   A   IYDT++F+   + T C+G+A    +LLL+AG  G R  LP AR++L
Sbjct: 69  YVNSPGGSFHAMSTIYDTLRFVSCDVETVCLGRAEGTAALLLAAGTPGKRCVLPGARLVL 128

Query: 138 HQ--PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
            Q  PSG   G+ASD+   A+++ +I+ R+ ++ V++ G+T E+    L+RD ++ A  A
Sbjct: 129 RQPDPSGPLEGRASDLAARAEELGRIRSRMEDMLVRHAGRTPEQARADLERDTVLDARAA 188

Query: 196 CDWGVVDKVLMSR 208
            D G+ D+++  R
Sbjct: 189 VDHGLADRIVPDR 201


>gi|116786337|gb|ABK24071.1| unknown [Picea sitchensis]
          Length = 341

 Score =  160 bits (406), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 76/172 (44%), Positives = 116/172 (67%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D  S LL++RIVF+  Q++D  A  I +QLL L+ E+  K+I L+INSPGG VTAGM IY
Sbjct: 99  DTTSMLLRQRIVFLGSQVDDVSADFIISQLLLLDLEDSTKDIKLFINSPGGSVTAGMGIY 158

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M+  K  +ST C G AASMG+ LL++G +G RF +PNA++++HQP GG  G A ++  
Sbjct: 159 DAMKLCKADVSTVCFGLAASMGAFLLASGTRGKRFCMPNAKVMIHQPLGGGGGSAIEMAL 218

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            A++++  K +L +I  +   K+ E++ K  DRD+ ++  EA ++G+ D V+
Sbjct: 219 QAKELMYHKIKLTKIMSRLTDKSGEQIAKDTDRDYFLNPWEAVEYGLADAVI 270


>gi|116784526|gb|ABK23378.1| unknown [Picea sitchensis]
          Length = 341

 Score =  160 bits (406), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 76/172 (44%), Positives = 116/172 (67%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D  S LL++RIVF+  Q++D  A  I +QLL L+ E+  K+I L+INSPGG VTAGM IY
Sbjct: 99  DTTSMLLRQRIVFLGSQVDDVSADFIISQLLLLDLEDSTKDIKLFINSPGGSVTAGMGIY 158

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M+  K  +ST C G AASMG+ LL++G +G RF +PNA++++HQP GG  G A ++  
Sbjct: 159 DAMKLCKADVSTVCFGLAASMGAFLLASGTRGKRFCMPNAKVMIHQPLGGGGGSAIEMAL 218

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            A++++  K +L +I  +   K+ E++ K  DRD+ ++  EA ++G+ D V+
Sbjct: 219 QAKELMYHKIKLTKIMSRLTDKSEEQIAKDTDRDYFLNPWEAVEYGLADAVI 270


>gi|227488327|ref|ZP_03918643.1| endopeptidase Clp [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227091737|gb|EEI27049.1| endopeptidase Clp [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 207

 Score =  160 bits (406), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 86/192 (44%), Positives = 135/192 (70%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE ++ G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE  +P ++I++
Sbjct: 12  ILPSFVEHSSYGAKESNPYNKLFEERIIFLGAQVDDTSANDIMAQLLVLEGLDPDRDITM 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++P + T C+GQAAS  ++LL+AG KG R ALPNAR+L+
Sbjct: 72  YINSPGGSFTSLMAIYDTMQYVRPDVRTVCLGQAASAAAVLLAAGAKGKRAALPNARVLI 131

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP + G  GQ SD+E  A++I ++++ + +    + G+T E+V    DRD I++A EA 
Sbjct: 132 HQPATQGTQGQVSDLEIQAREIERMRKLMEDTLAHHTGQTSEQVRIDTDRDKILTAQEAV 191

Query: 197 DWGVVDKVLMSR 208
           ++G++D+V   R
Sbjct: 192 EYGLIDEVFDYR 203


>gi|28202196|ref|NP_777437.1| ATP-dependent Clp protease proteolytic subunit [Anthoceros
           formosae]
 gi|41688497|sp|Q85BZ1|CLPP_ANTFO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|27807898|dbj|BAC55373.1| ATP-dependent protease proteolytic subunit exon3 [Anthoceros
           formosae]
 gi|27808041|dbj|BAC55470.1| ATP-dependent protease proteolytic subunit [Anthoceros formosae]
          Length = 204

 Score =  160 bits (405), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 74/172 (43%), Positives = 118/172 (68%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+   ++D +A  +   +++L  E+  K++ LYINSPGG V AG+++Y
Sbjct: 22  DVYNRLYRERLLFLGQHVDDEIANQLIGIMMYLNGEDESKDMYLYINSPGGAVLAGISVY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           DTMQF+ P + T CMG AASMGS +L+ GE   R ALP+ARI++HQP S  + GQA +  
Sbjct: 82  DTMQFVVPDVHTICMGLAASMGSFILTGGEITKRIALPHARIMIHQPASSYYDGQAGECI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  + ++YV+  GK    + + ++RD  MSA EA  +G+VD V
Sbjct: 142 MEAEEVLKLRDCITKVYVQRTGKPLWVISEDMERDVFMSAKEAQIYGIVDFV 193


>gi|297626027|ref|YP_003687790.1| ATP-dependent Clp protease proteolytic subunit 2 (Endopeptidase Clp
           2) [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296921792|emb|CBL56352.1| ATP-dependent Clp protease proteolytic subunit 2 (Endopeptidase Clp
           2) [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 229

 Score =  160 bits (405), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 89/209 (42%), Positives = 138/209 (66%), Gaps = 6/209 (2%)

Query: 5   GCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLL 64
           G A   S + +   +P   E+T+ G R  D Y++L ++RI+F+   I D +A  + AQLL
Sbjct: 23  GLATSPSAEYY---IPQWEERTSYGVRRVDPYTKLFEDRIIFLGAPITDDVANAVMAQLL 79

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
            L++ +  + IS+YINSPGG  TA  AIYDTMQ++KP + T C+GQAAS  ++LL+AG K
Sbjct: 80  SLQSMDVDRPISIYINSPGGSFTALTAIYDTMQYLKPAVQTICLGQAASAAAVLLAAGAK 139

Query: 125 GMRFALPNARILLHQP--SG-GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVE 181
           G R ALPN+RIL+HQP  SG G  GQ+SD+E  A++I++I+  + ++     G+  E + 
Sbjct: 140 GQRLALPNSRILIHQPAISGEGSYGQSSDLEIQAKEILRIRSLMEQMLADATGQPVERIN 199

Query: 182 KTLDRDHIMSASEACDWGVVDKVLMSRID 210
           + ++RD  ++A EA ++G++D +L S  D
Sbjct: 200 RDVERDKYLTAEEAKEYGLIDDILTSLKD 228


>gi|227542941|ref|ZP_03972990.1| endopeptidase Clp [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227181163|gb|EEI62135.1| endopeptidase Clp [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 207

 Score =  160 bits (405), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 86/192 (44%), Positives = 135/192 (70%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE ++ G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE  +P ++I++
Sbjct: 12  ILPSFVEHSSYGAKESNPYNKLFEERIIFLGAQVDDTSANDIMAQLLVLEGLDPDRDITM 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++P + T C+GQAAS  ++LL+AG KG R ALPNAR+L+
Sbjct: 72  YINSPGGSFTSLMAIYDTMQYVRPDVRTVCLGQAASAAAVLLAAGAKGKRAALPNARVLI 131

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP + G  GQ SD+E  A++I ++++ + +    + G+T E+V    DRD I++A EA 
Sbjct: 132 HQPATQGTQGQVSDLEIQAREIERMRKLMEDTLAHHTGQTSEQVRIDTDRDKILTAPEAV 191

Query: 197 DWGVVDKVLMSR 208
           ++G++D+V   R
Sbjct: 192 EYGLIDEVFDYR 203


>gi|293418507|ref|ZP_06660942.1| conserved hypothetical protein [Escherichia coli B088]
 gi|291325035|gb|EFE64450.1| conserved hypothetical protein [Escherichia coli B088]
          Length = 99

 Score =  160 bits (405), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 73/101 (72%), Positives = 90/101 (89%), Gaps = 2/101 (1%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D+    + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--ERDNFAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP 101
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP
Sbjct: 59  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKP 99


>gi|302524704|ref|ZP_07277046.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sp. AA4]
 gi|302433599|gb|EFL05415.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sp. AA4]
          Length = 196

 Score =  160 bits (405), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 82/190 (43%), Positives = 129/190 (67%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VV ++  GER  D+YS LL ERIV++   I+  +A  + AQLLFLE++NP++EI+LY
Sbjct: 6   IPNVVTRSPGGERIMDVYSHLLSERIVYLGTAIDSGVANALIAQLLFLESDNPEQEINLY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INS GG   A +A+YDTM+FIK P++T C+GQA + G++LL+AG  G R  LP+AR++LH
Sbjct: 66  INSEGGDPAAMLALYDTMRFIKAPVATTCVGQAVATGAVLLAAGAAGRRSVLPHARVVLH 125

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP+    G   D+   A ++++++ +L EI  ++ G    E+    DRD +  A+ A ++
Sbjct: 126 QPAAQGRGTIPDLILQADEVIRVRTQLEEITSRHTGHDVAELRHDTDRDRVFDAAGAVEY 185

Query: 199 GVVDKVLMSR 208
           G+ D+V+ +R
Sbjct: 186 GLADQVIEAR 195


>gi|261337232|ref|ZP_05965116.1| Clp protease [Bifidobacterium gallicum DSM 20093]
 gi|270277586|gb|EFA23440.1| Clp protease [Bifidobacterium gallicum DSM 20093]
          Length = 234

 Score =  160 bits (405), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 85/193 (44%), Positives = 134/193 (69%), Gaps = 3/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y+RL ++RI+++  Q++D  A  I AQLL LE+ +P +++ +
Sbjct: 42  VLPQFEEKTPYGFKRQDPYTRLFEDRIIWMGVQVDDTSADDIMAQLLVLESLDPSRDVMM 101

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL+AG KG R  LPNAR+L+
Sbjct: 102 YINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLAAGTKGKRLILPNARVLI 161

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+   GF G+A++IE  A+++++++  L     K+ G+  E + K ++ D  ++A EA
Sbjct: 162 HQPAIDQGF-GKATEIEIQAKEMLRMREWLENTLAKHTGQPIERIRKDIEVDTFLTAQEA 220

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD+VL  R
Sbjct: 221 KEYGIVDEVLEHR 233


>gi|302528952|ref|ZP_07281294.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sp. AA4]
 gi|302437847|gb|EFL09663.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sp. AA4]
          Length = 194

 Score =  160 bits (405), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 75/146 (51%), Positives = 101/146 (69%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           ++ RLL+ERIV +  ++ D +A  + AQLL L+A++ + +I  YINSPGG VTAG AIYD
Sbjct: 48  VFERLLQERIVVLGSEVNDEVANRLTAQLLLLDADDAESDIRFYINSPGGSVTAGFAIYD 107

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ I+P ++T+ MG AASMG  LLS+G  G R+ALP+ARIL+HQPS G  G ASDI   
Sbjct: 108 TMQLIRPDVATYAMGMAASMGQFLLSSGTPGKRYALPHARILMHQPSAGVGGTASDIAIQ 167

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEV 180
           A    K K+ L  I  +  G+T E++
Sbjct: 168 ADLFNKWKQELARITAEQTGQTTEQI 193


>gi|297571129|ref|YP_003696903.1| endopeptidase Clp [Arcanobacterium haemolyticum DSM 20595]
 gi|296931476|gb|ADH92284.1| Endopeptidase Clp [Arcanobacterium haemolyticum DSM 20595]
          Length = 226

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 90/192 (46%), Positives = 131/192 (68%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++RIVF+  Q++D  A  + AQLL LE+ +P+  I++
Sbjct: 26  ILPNFEERTPYGYKRQDPYAKLFEDRIVFLGVQVDDASADDVMAQLLVLESIDPESPITM 85

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+IKP I T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 86  YINSPGGSFTALTAIYDTMQYIKPQIQTVCLGQAASAAAVLLAAGAPGRRLALPNARVLI 145

Query: 138 HQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+  G  GQASDI   A +I ++   L +    + G+  E ++K + RD I++A +A 
Sbjct: 146 HQPAMEGVQGQASDIAIVADEIDRMNDWLIDTLAAHSGRDRELIKKDIARDKILTAQQAK 205

Query: 197 DWGVVDKVLMSR 208
           ++G+VD+VL SR
Sbjct: 206 EYGLVDQVLTSR 217


>gi|254704398|ref|ZP_05166226.1| ATP-dependent Clp protease proteolytic subunit [Brucella suis bv. 3
           str. 686]
          Length = 95

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 71/94 (75%), Positives = 85/94 (90%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  +  + LVPMVVEQTNRGER+YDI+SRLLKERI+FV G +ED M+ L+CAQLLFLEA
Sbjct: 2   RDPIETVMNLVPMVVEQTNRGERAYDIFSRLLKERIIFVNGPVEDGMSMLVCAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           ENP+KEI++YINSPGGVVT+GMAIYDTMQFI+PP
Sbjct: 62  ENPKKEINMYINSPGGVVTSGMAIYDTMQFIRPP 95


>gi|29833643|ref|NP_828277.1| ATP-dependent Clp protease proteolytic subunit 2 [Streptomyces
           avermitilis MA-4680]
 gi|67460532|sp|Q826S4|CLPP5_STRAW RecName: Full=ATP-dependent Clp protease proteolytic subunit 5;
           AltName: Full=Endopeptidase Clp 5
 gi|29610767|dbj|BAC74812.1| putative ATP-dependent Clp protease proteolytic subunit 2
           [Streptomyces avermitilis MA-4680]
          Length = 211

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 85/192 (44%), Positives = 124/192 (64%), Gaps = 2/192 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P   E+ + G R+ D YS+LL ERIVF+   I+D  A  + AQ + LE   P ++ISLY
Sbjct: 10  LPEFTERLSTGLRTLDPYSKLLDERIVFLGTPIDDTSANDVMAQFMHLEHLAPDRDISLY 69

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  +A  A+YDTMQF+   + T C+GQAAS  ++LL+ G  G R ALP AR+L+H
Sbjct: 70  INSPGGSFSAMTAVYDTMQFVSCDVETICLGQAASAAAVLLAGGTPGKRLALPGARVLIH 129

Query: 139 QPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           QPS      GQASD+   A ++ + + +L E+ V++ G++ E V   ++RD I+ A  A 
Sbjct: 130 QPSLPAPVQGQASDLVIQAAELARTREQLEELLVRHTGQSPERVAADIERDKILDAPAAV 189

Query: 197 DWGVVDKVLMSR 208
            +G+VD+V+ SR
Sbjct: 190 AYGLVDRVVPSR 201


>gi|313183906|ref|YP_004021760.1| clp protease proteolytic subunit [Equisetum arvense]
 gi|281371626|gb|ADA63559.1| clp protease proteolytic subunit [Equisetum arvense]
          Length = 204

 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 73/172 (42%), Positives = 117/172 (68%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  Q++D ++  +   +++L  E+  +++ LYINSPGG V  G+++Y
Sbjct: 22  DVYNRLYRERLLFLGQQVDDEISNQLVGIMMYLNGEDDTRDLYLYINSPGGAVLPGISVY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           D MQF+ P + T CMG AASMGS +L+ GE   R ALP+ARI++HQP S  + GQA +  
Sbjct: 82  DAMQFVIPDVHTICMGLAASMGSFILAGGEITKRLALPHARIMIHQPASSYYDGQAGECV 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++I K++  + ++YV+  GK    V + ++RD  MSA EA D+G++D V
Sbjct: 142 LEAEEISKLRDCITKVYVQRTGKPLRVVSEDMERDVFMSAEEARDYGLIDLV 193


>gi|302771047|ref|XP_002968942.1| hypothetical protein SELMODRAFT_90346 [Selaginella moellendorffii]
 gi|300163447|gb|EFJ30058.1| hypothetical protein SELMODRAFT_90346 [Selaginella moellendorffii]
          Length = 195

 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 71/172 (41%), Positives = 114/172 (66%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+ S +L+ RI+F+   I   +A  + +QL+ L A + +K+I LYIN PGG   + +AIY
Sbjct: 20  DLTSIMLRSRIIFIGQPINSQVAQRVISQLVMLAAIDEEKDIQLYINCPGGSTYSVLAIY 79

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M +IKP +ST C G AAS G+L+L+ G KG+RFA+PN+R+++HQP GG  G   D+ R
Sbjct: 80  DCMSWIKPRVSTVCFGMAASQGALILAGGTKGLRFAMPNSRVMIHQPQGGCGGTMEDVRR 139

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
              ++V  + +++++Y    G+  E V+   +RDH  SA+EA ++G++D +L
Sbjct: 140 QVNEVVASRDKIDKMYAAFTGQPLEIVQTYTERDHFFSAAEAMEFGLIDGLL 191


>gi|11466727|ref|NP_039323.1| ATP-dependent Clp protease proteolytic subunit [Marchantia
           polymorpha]
 gi|116525|sp|P12208|CLPP_MARPO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|456519|emb|CAA28109.1| unnamed protein product [Marchantia polymorpha]
          Length = 203

 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 73/172 (42%), Positives = 118/172 (68%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  Q++D +A  +   +++L  E+  K++ LYINSPGG V AG+++Y
Sbjct: 22  DVYNRLYRERLLFLGQQVDDEIANQLIGIMMYLNGEDESKDMYLYINSPGGAVLAGISVY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           D MQF+ P + T CMG AASMGS +L+ GE   R ALP+AR+++HQP S  + GQA +  
Sbjct: 82  DAMQFVVPDVHTICMGLAASMGSFILTGGEITKRIALPHARVMIHQPASSYYDGQAGECI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  + ++YV+  GK    + + ++RD  MSA EA  +G+VD V
Sbjct: 142 MEAEEVLKLRDCITKVYVQRTGKPLWVISEDMERDVFMSAKEAKLYGIVDLV 193


>gi|169628672|ref|YP_001702321.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           abscessus ATCC 19977]
 gi|169240639|emb|CAM61667.1| ATP-dependent Clp protease, proteolytic subunit 1 [Mycobacterium
           abscessus]
          Length = 217

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 85/193 (44%), Positives = 129/193 (66%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +E ++ G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE+ +P +EI++
Sbjct: 17  ILPSFIEHSSFGVKESNPYNKLFEERIIFLGVQVDDASANDIMAQLLVLESLDPDREITM 76

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++  I T  +GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 77  YINSPGGSFTSLMAIYDTMQYVRSDIRTVVLGQAASAAAVLLAAGTPGKRMALPNARVLI 136

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SG   GQ +D+E  A +I +++        ++ G+  EE+ K  DRD I +A EA
Sbjct: 137 HQPALSGVIQGQFTDLEIQAAEIERMRVLQETTLARHTGRPAEEIRKDTDRDKIFTAEEA 196

Query: 196 CDWGVVDKVLMSR 208
            ++G++D VL  R
Sbjct: 197 KEYGIIDVVLEYR 209


>gi|308235224|ref|ZP_07665961.1| ATP-dependent Clp protease proteolytic subunit [Gardnerella
           vaginalis ATCC 14018]
 gi|311114525|ref|YP_003985746.1| endopeptidase Clp [Gardnerella vaginalis ATCC 14019]
 gi|310946019|gb|ADP38723.1| endopeptidase Clp [Gardnerella vaginalis ATCC 14019]
          Length = 222

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 84/192 (43%), Positives = 134/192 (69%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   EQT  G ++ D Y++L ++RI+F+  Q++D  A  I AQLL LE+ +P +++ +
Sbjct: 30  VLPQFGEQTPYGMKTQDPYTKLFEDRIIFMGVQVDDTSADDIMAQLLVLESMDPNRDVMM 89

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL+AG  G R  LPNAR+L+
Sbjct: 90  YINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLAAGSAGKRMILPNARVLI 149

Query: 138 HQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+ G   G+A++IE  A+++++++  L     K+ G+  E + K ++ D I++A +A 
Sbjct: 150 HQPAMGQDFGKATEIELQAKEMLRLREWLESTLAKHTGQDIERIRKDIEVDTILTAPQAK 209

Query: 197 DWGVVDKVLMSR 208
           ++G+VD+VL  R
Sbjct: 210 EYGMVDEVLEHR 221


>gi|303285882|ref|XP_003062231.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456642|gb|EEH53943.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 195

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 73/166 (43%), Positives = 112/166 (67%)

Query: 40  LKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           + +R +F+ G+++D  A  +  ++LFL+A +P+  I LY+NS GGVVT+G+AIYD MQ +
Sbjct: 1   MGQRRIFLNGRVDDKSAHSLVGKMLFLDAVDPETPIVLYVNSGGGVVTSGLAIYDVMQHV 60

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
           +PP+ T C+G A SM ++LL AGEKG R+ LPNAR+++HQP    SGQ +DI   A    
Sbjct: 61  RPPVYTVCIGHAESMAAVLLCAGEKGHRYVLPNARVMVHQPHHVISGQTTDILIKATKAE 120

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
             +  L +I  K+ G++  EV   L+RD  M+A+EA  +G+ D+V+
Sbjct: 121 HTRTTLRDIIAKHSGRSAGEVIGVLERDTYMTAAEAVTFGLADEVI 166


>gi|224080315|ref|XP_002306094.1| predicted protein [Populus trichocarpa]
 gi|118485273|gb|ABK94496.1| unknown [Populus trichocarpa]
 gi|222849058|gb|EEE86605.1| predicted protein [Populus trichocarpa]
          Length = 265

 Score =  159 bits (401), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 71/172 (41%), Positives = 112/172 (65%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+ S L + RI+F+   I   +A  + +QL+ L   + + +I LY+N PGG   + +AIY
Sbjct: 90  DLSSVLFRNRIIFIGQPINSQVAQRVISQLVTLATIDEKTDILLYLNCPGGSTYSVLAIY 149

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M +IKP + T C G AAS G+LLLS GEKGMR+A+PNARI++HQP GG  G   D+ R
Sbjct: 150 DCMSWIKPKVGTVCFGVAASQGALLLSGGEKGMRYAMPNARIMIHQPQGGCGGHVEDVRR 209

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
              + V+ + +++++Y    G+  E+V++  +RD  +S SEA ++G++D +L
Sbjct: 210 QVNEAVQARHKIDQMYATFTGQPLEKVQQYTERDRFLSTSEAMEFGLIDGIL 261


>gi|108796681|ref|YP_636469.1| ATP-dependent Clp protease proteolytic subunit [Zygnema
           circumcarinatum]
 gi|122211761|sp|Q32RQ7|CLPP_ZYGCR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|61393665|gb|AAX45807.1| proteolytic subunit 2 of clp protease [Zygnema circumcarinatum]
          Length = 211

 Score =  159 bits (401), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 71/172 (41%), Positives = 117/172 (68%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL ++R++F+   ++D +A  +   +++L  EN  K++ +YINSPGG V AG+++Y
Sbjct: 22  DVYNRLYRDRLLFLGQDVDDEIANQLIGIMIYLNGENQSKDMYMYINSPGGAVLAGISVY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           D MQF+ P + T CMG AASMGS +L+ GE   R ALP+AR+++HQP+  F  GQA +  
Sbjct: 82  DAMQFVVPDVHTICMGLAASMGSFILTGGEISKRLALPHARVMIHQPASSFYEGQAGECM 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K+K  + ++Y++  GK    + + ++RD  MSA EA  +G+VD V
Sbjct: 142 IEAEEVLKLKDCVTKVYMQRTGKPMAVISEDMERDVFMSAKEAQAYGIVDLV 193


>gi|108796785|ref|YP_636436.1| ATP-dependent Clp protease proteolytic subunit [Staurastrum
           punctulatum]
 gi|122211785|sp|Q32RU0|CLPP_STAPU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|61393553|gb|AAX45694.1| proteolytic subunit 2 of clp protease [Staurastrum punctulatum]
          Length = 201

 Score =  159 bits (401), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 71/172 (41%), Positives = 118/172 (68%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+   ++D +A  +   +++L  E+  K++ +YINSPGG V AG+++Y
Sbjct: 22  DVYNRLYRERLLFLGQNVDDEIANQLIGIMIYLNGEDESKDMYMYINSPGGAVLAGISVY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           D MQF+ P + T CMG AASMGS +L+ GE   R ALP+AR+++HQP S  + GQA +  
Sbjct: 82  DAMQFVVPDVHTICMGLAASMGSFILTGGEITKRIALPHARVMIHQPASSYYDGQAGECM 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  + ++YV+  GK    + + ++RD  MSA EA ++G+VD V
Sbjct: 142 MEAEEVLKLRDCITKVYVQRTGKPAWLISEDMERDVFMSAKEAQEYGIVDLV 193


>gi|294056505|ref|YP_003550163.1| Endopeptidase Clp [Coraliomargarita akajimensis DSM 45221]
 gi|293615838|gb|ADE55993.1| Endopeptidase Clp [Coraliomargarita akajimensis DSM 45221]
          Length = 193

 Score =  159 bits (401), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 77/173 (44%), Positives = 110/173 (63%), Gaps = 2/173 (1%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I    LK R +F+ G++ D  A  +  +LLFLE E P +EI+ YIN+PGG +TAGMAIYD
Sbjct: 18  IQESFLKNRKIFLWGEVSDKSAKDVTEKLLFLEMEAPGEEITFYINTPGGSITAGMAIYD 77

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP--SGGFSGQASDIE 152
           TM+ I  PI     G AASMGS+LL    KG R   P++R+L+HQP  SG     A DI 
Sbjct: 78  TMKLISSPIKVVVTGMAASMGSILLCGASKGKRVLYPHSRVLIHQPLISGQMVAVAVDIH 137

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
             A+++ +++  LN I  ++ G+  E++EK  DRD  M+A EA D+G+ D+++
Sbjct: 138 IQAKEMERLRDELNAILAESSGQPLEQIEKDTDRDFYMTAKEAIDYGLADEIV 190


>gi|257458199|ref|ZP_05623353.1| Clp protease [Treponema vincentii ATCC 35580]
 gi|257444493|gb|EEV19582.1| Clp protease [Treponema vincentii ATCC 35580]
          Length = 202

 Score =  158 bits (400), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 75/177 (42%), Positives = 115/177 (64%)

Query: 38  RLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97
           + L  R + ++G++   +A  +  QLL LEA++  K I +YI+SPGG V AG AI+D ++
Sbjct: 26  KFLNTRQIILSGEVNKELAEKVIRQLLILEADSASKPIYVYIDSPGGDVDAGFAIFDMIR 85

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
           FIKPP+ T  MG  AS G+L+L A  K  R  LPN+  L+HQP  G  G A+DIE HA++
Sbjct: 86  FIKPPVYTVGMGLVASAGALILLAAPKNRRLGLPNSHYLIHQPLSGIKGVATDIEIHAKE 145

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           I KI+ ++N +  +  GK   +V K  DRD+ +SA EA ++G++ +V+ +R D+ +K
Sbjct: 146 IEKIRAKINALIAEETGKDVADVAKDTDRDYWLSADEAVNYGLILQVIKTRSDLPKK 202


>gi|290489460|gb|ADD31114.1| clp protease proteolytic subunit protein [Euonymus americanus]
          Length = 197

 Score =  158 bits (400), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 76/182 (41%), Positives = 118/182 (64%), Gaps = 4/182 (2%)

Query: 27  NRGERS---YDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           N GE +    DIY+RL +ER++F+   I  H+A  + A +L+L  E+  K++ L+INSPG
Sbjct: 12  NPGENASSWVDIYNRLYRERLLFLGQIINTHLANQLIALILYLTMESDTKDLYLFINSPG 71

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SG 142
           G V  G+A+YDTMQF++P + T C+G AASMGS +L  G+   R A P+AR+++HQP S 
Sbjct: 72  GWVIPGIALYDTMQFVRPDVQTICLGLAASMGSFILVGGKITKRLAFPHARVMIHQPFSA 131

Query: 143 GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
            F  Q  +    A++++K++  +  +YV+  GK    V + ++RD  MSA+EA   G+VD
Sbjct: 132 FFMAQVGEFVLEAEELLKLRETITRVYVQRTGKPLWMVSEDMERDAFMSATEAQAHGIVD 191

Query: 203 KV 204
           +V
Sbjct: 192 RV 193


>gi|239939670|ref|ZP_04691607.1| putative ATP-dependent Clp protease [Streptomyces roseosporus NRRL
           15998]
 gi|239986153|ref|ZP_04706817.1| putative ATP-dependent Clp protease [Streptomyces roseosporus NRRL
           11379]
          Length = 201

 Score =  158 bits (400), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 84/193 (43%), Positives = 126/193 (65%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G R+ D YS+LL ERIVF+   I+D  A+ + AQL++LE  +P + +SL
Sbjct: 9   VLPEFTERTATGTRTQDPYSKLLSERIVFLGSPIDDTAASDLIAQLMYLEHADPDRPVSL 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG   A  A+YDTMQF+   + TFC+GQA S  + LL+AG KG R ALP AR+++
Sbjct: 69  YINSPGGSFQAMAAVYDTMQFLTCEVETFCLGQAGSYAAALLAAGAKGRRHALPGARVVI 128

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
            QP+      GQ SD+E HA+++V+ +     + V++ G+T E++   ++RD I+ A  A
Sbjct: 129 QQPALEEPMRGQPSDLEIHARELVRTREMFAAMLVRHTGRTAEQITADIERDTILDAKAA 188

Query: 196 CDWGVVDKVLMSR 208
              G+VD V+ +R
Sbjct: 189 LAHGLVDHVVENR 201


>gi|320537176|ref|ZP_08037146.1| Clp protease [Treponema phagedenis F0421]
 gi|320145982|gb|EFW37628.1| Clp protease [Treponema phagedenis F0421]
          Length = 197

 Score =  158 bits (399), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 75/191 (39%), Positives = 121/191 (63%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           E+ + G  S  +  + L+ R + ++G++   +A  +  QLL LEAE+  K I +YI+SPG
Sbjct: 7   EEQDNGIGSNVLIGKFLETRQILLSGEVNKELAEKVIRQLLILEAESATKPIYVYIDSPG 66

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           G V AG AI+D ++F+KPP+    MG  AS G+L+L AG K  R  LPN+  L+HQP  G
Sbjct: 67  GDVDAGYAIFDMIRFVKPPVYMIGMGLVASAGALILLAGAKDYRLGLPNSHYLIHQPLSG 126

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
             G A+DIE HA+++ K ++++NE+     G   ++VEK  DRD+ + A +A  +G++ K
Sbjct: 127 MKGVATDIEIHAKELEKTRQKINELIAAQTGTEIKKVEKDTDRDYWLDAPDALSYGLISK 186

Query: 204 VLMSRIDIEEK 214
           ++ SR ++ +K
Sbjct: 187 IIASRNELPKK 197


>gi|182416350|ref|YP_001821416.1| endopeptidase Clp [Opitutus terrae PB90-1]
 gi|177843564|gb|ACB77816.1| Endopeptidase Clp [Opitutus terrae PB90-1]
          Length = 216

 Score =  158 bits (399), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 75/173 (43%), Positives = 112/173 (64%), Gaps = 2/173 (1%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I  + L++R +F+ G + D  A  +  +LL+LEA +P KEI+ YINSPGG +TAGMA++D
Sbjct: 41  IQKKFLRQRKIFLWGAVTDETAKDMTEKLLYLEAVDPGKEITFYINSPGGSITAGMAVFD 100

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP--SGGFSGQASDIE 152
           TM+ I  PI+    G AASMGS+LL    KG R   P+AR+L+HQP  SG   G A+DI 
Sbjct: 101 TMRLITSPITVIVTGMAASMGSILLCGAPKGRRLLYPHARVLIHQPLISGRMVGPATDIN 160

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
             A+++ KI+  LN+I   + G+  E + +  DRD  ++A EA  +G+ D+++
Sbjct: 161 IQAKEMEKIRAELNQILADSSGQPIERINQDTDRDFYLNAKEAIAYGLADRIV 213


>gi|291443095|ref|ZP_06582485.1| ATP-dependent Clp protease proteolytic subunit 5 [Streptomyces
           roseosporus NRRL 15998]
 gi|291346042|gb|EFE72946.1| ATP-dependent Clp protease proteolytic subunit 5 [Streptomyces
           roseosporus NRRL 15998]
          Length = 217

 Score =  157 bits (398), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 84/193 (43%), Positives = 126/193 (65%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G R+ D YS+LL ERIVF+   I+D  A+ + AQL++LE  +P + +SL
Sbjct: 25  VLPEFTERTATGTRTQDPYSKLLSERIVFLGSPIDDTAASDLIAQLMYLEHADPDRPVSL 84

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG   A  A+YDTMQF+   + TFC+GQA S  + LL+AG KG R ALP AR+++
Sbjct: 85  YINSPGGSFQAMAAVYDTMQFLTCEVETFCLGQAGSYAAALLAAGAKGRRHALPGARVVI 144

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
            QP+      GQ SD+E HA+++V+ +     + V++ G+T E++   ++RD I+ A  A
Sbjct: 145 QQPALEEPMRGQPSDLEIHARELVRTREMFAAMLVRHTGRTAEQITADIERDTILDAKAA 204

Query: 196 CDWGVVDKVLMSR 208
              G+VD V+ +R
Sbjct: 205 LAHGLVDHVVENR 217


>gi|302816621|ref|XP_002989989.1| hypothetical protein SELMODRAFT_130729 [Selaginella moellendorffii]
 gi|300142300|gb|EFJ09002.1| hypothetical protein SELMODRAFT_130729 [Selaginella moellendorffii]
          Length = 203

 Score =  157 bits (398), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 70/172 (40%), Positives = 113/172 (65%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+ S +L+ RI+F+   I   +A  + +QL+ L A + +K+I LYIN PGG   + +AIY
Sbjct: 28  DLTSIMLRSRIIFIGQPINSQVAQRVISQLVMLAAIDEEKDIQLYINCPGGSTYSVLAIY 87

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M +IKP + T C G AAS G+L+L+ G KG+RFA+PN+R+++HQP GG  G   D+ R
Sbjct: 88  DCMSWIKPRVGTVCFGMAASQGALILAGGTKGLRFAMPNSRVMIHQPQGGCGGTMEDVRR 147

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
              ++V  + +++++Y    G+  E V+   +RDH  SA+EA ++G++D +L
Sbjct: 148 QVNEVVASRDKIDKMYSAFTGQPLEIVQTYTERDHFFSAAEAMEFGLIDGLL 199


>gi|193237752|dbj|BAG50149.1| ATP-dependent Clp protease proteolytic subunit [Takakia
           lepidozioides]
 gi|193237765|dbj|BAG50156.1| ATP-dependent Clp protease proteolytic subunit [Takakia
           lepidozioides]
          Length = 204

 Score =  157 bits (397), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 72/172 (41%), Positives = 117/172 (68%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+   ++D +A  +   +++L  E+  K++ LYINSPGG V AG+++Y
Sbjct: 22  DVYNRLYRERLLFLGQHVDDEIANQLIGIMMYLNGEDESKDMYLYINSPGGAVLAGISVY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           D MQF+ P + T CMG AASMGS +L+ GE   R ALP+AR+++HQP S  + GQA +  
Sbjct: 82  DAMQFVVPDVHTICMGLAASMGSFILTGGEITKRIALPHARVMIHQPASSYYDGQAGECI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  + ++YV+  GK    + + ++RD  MSA EA  +G+VD V
Sbjct: 142 MEAEEVLKLRDCITKVYVQRTGKPLWIISEDMERDVFMSAEEAKVYGIVDFV 193


>gi|91208926|ref|YP_538961.1| ATP-dependent Clp protease proteolytic subunit [Gossypium hirsutum]
 gi|122201402|sp|Q2L926|CLPP_GOSHI RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|85687440|gb|ABC73652.1| clp protease proteolytic subunit [Gossypium hirsutum]
          Length = 196

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 72/172 (41%), Positives = 114/172 (66%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  +++  ++  +   +++L  EN  K++ L+INSPGG V  G+AIY
Sbjct: 22  DVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIENDTKDLYLFINSPGGWVIPGVAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF++P + T CMG AASMGS LL+ GE   R A P+AR+++HQP+  F   Q  +  
Sbjct: 82  DTMQFVQPDVHTICMGLAASMGSFLLAGGEITKRLAFPHARVMIHQPASSFYEAQTGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  L  +YV+  GK    V + ++RD  MSA+EA   G+VD V
Sbjct: 142 LEAEELLKLRESLTRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLV 193


>gi|52220834|ref|YP_086990.1| ATP-dependent Clp protease proteolytic subunit [Panax ginseng]
 gi|68052101|sp|Q68RY2|CLPP_PANGI RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|51235337|gb|AAT98533.1| ATP-dependent protease; catalytic subunit [Panax ginseng]
          Length = 196

 Score =  157 bits (396), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 75/189 (39%), Positives = 122/189 (64%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGERSY--DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E +Y  DIY+RL +ER++F+   +   ++  +   +++L  E+  K++ 
Sbjct: 5   VPKVPFRSPGEEDAYWVDIYNRLYRERLLFLGQPVASEISNQLIGLMVYLSIEDDTKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L++NSPGG V  G+AIYDTMQF++P + T CMG AASMGS +L+ GE   R A P+AR++
Sbjct: 65  LFMNSPGGWVLPGIAIYDTMQFVRPDVHTICMGLAASMGSFILAGGEITKRLAFPHARVM 124

Query: 137 LHQPSGGF-SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP+  F   Q  +    A++++K++  +  +YV+  GK +  V + L+RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQTGEFVLEAEELLKLRETITRVYVQKTGKPFWVVSEDLERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
             +G+VD V
Sbjct: 185 QAYGIVDLV 193


>gi|114329680|ref|YP_740501.1| clp protease proteolytic subunit [Citrus sinensis]
 gi|122166158|sp|Q09MF2|CLPP_CITSI RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|113952646|gb|ABI49044.1| clp protease proteolytic subunit [Citrus sinensis]
          Length = 196

 Score =  157 bits (396), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/172 (43%), Positives = 113/172 (65%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           DIY+RL +ER++F+   +E  ++  +   +++L  EN  K++ L+INSPGG V  G+AIY
Sbjct: 22  DIYNRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG-QASDIE 152
           DTMQF++P + T CMG AASMGS LL+AG    R A P+AR+++HQP G F G Q  +  
Sbjct: 82  DTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHARVMIHQPIGAFYGAQTGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
              +++++++  L  +YV+  GK    V + ++RD  MSA+EA   G+VD V
Sbjct: 142 LDTEELLRLREILTMVYVQRSGKPLWVVSEDMERDTFMSATEAQAHGLVDLV 193


>gi|11466963|ref|NP_054384.1| ATP-dependent Clp protease proteolytic subunit [Epifagus
           virginiana]
 gi|231812|sp|P30063|CLPP_EPIVI RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|336919|gb|AAA65858.1| protease [Epifagus virginiana]
          Length = 196

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 72/172 (41%), Positives = 114/172 (66%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  +++  ++  +   +++L  E+  KEI L+INSPGG V  G+AIY
Sbjct: 22  DVYNRLYRERLLFLGQEVDSDISNQLIGLMVYLSIEDDTKEIYLFINSPGGWVIPGVAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG-QASDIE 152
           DTMQF++P + T CMG AASMGS LL  GE   R A P+AR+++HQP+  F G Q  +  
Sbjct: 82  DTMQFVRPEVHTICMGLAASMGSFLLVGGEITKRLAFPHARVMIHQPASYFFGAQTGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  L  +YV+  GK    + + ++RD  MSA +A  +G+VD V
Sbjct: 142 LEAEELLKLRETLTRVYVQRTGKPLWVISEDMERDVFMSAKDAQAYGIVDLV 193


>gi|224179410|ref|YP_002600868.1| proteolytic subunit 2 of clp protease [Pycnococcus provasolii]
 gi|217314453|gb|ACK36795.1| proteolytic subunit 2 of clp protease [Pycnococcus provasolii]
          Length = 224

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 72/177 (40%), Positives = 115/177 (64%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  +++D +   I   +L+L AE+  +   LYINSPGG VT G+A++
Sbjct: 22  DLYNRLYRERVLFLGQELDDELCNQIVGMMLYLSAEDSSQNQELYINSPGGAVTCGLALF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           DTM+ +   I T CMG AAS  S +L  G    R ALP+AR+++HQP GG  GQAS+I  
Sbjct: 82  DTMEHVAANIITVCMGLAASTASFVLCGGTPLRRCALPHARVMIHQPEGGTRGQASEIIY 141

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
            + +I++++R++  +Y +  G++ ++V   +DRD   SA EA  +G+VD V    +D
Sbjct: 142 ESVEILRLRRQVGLLYAQRTGQSIDQVANDMDRDTFFSAEEARSYGLVDGVAYPDVD 198


>gi|258543192|ref|YP_003188625.1| ATP-dependent Clp protease proteolytic subunit [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256634270|dbj|BAI00246.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
           3283-01]
 gi|256637330|dbj|BAI03299.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640382|dbj|BAI06344.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643439|dbj|BAI09394.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646494|dbj|BAI12442.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649547|dbj|BAI15488.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652533|dbj|BAI18467.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655591|dbj|BAI21518.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
           3283-12]
          Length = 226

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 80/196 (40%), Positives = 119/196 (60%), Gaps = 3/196 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
            P   E+   G    ++  +L K+R V + G I+D +A  +  +LL L  E+ Q  I +Y
Sbjct: 32  APEKAEEKTAGAPHGELEHKLFKQRKVLIFGGIDDKIARDVTGRLLALAGESDQP-IDVY 90

Query: 79  INSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +NSPGG V +G  I+D ++F+    PI+    G  AS G+L+ +AG K  RF LPN R L
Sbjct: 91  VNSPGGHVESGDTIHDMIRFVDSIAPINMIGTGWVASAGALIFAAGHKDRRFCLPNTRFL 150

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           LHQP GG  G A+DI+  A++I+K++ RLN I+ K  G +YE+V K  DR++ MSA EA 
Sbjct: 151 LHQPMGGVRGPATDIDIEAREIIKMRERLNRIFAKETGHSYEKVAKDTDRNYWMSAKEAI 210

Query: 197 DWGVVDKVLMSRIDIE 212
           D+G+V K++    D+ 
Sbjct: 211 DYGLVTKIISKLSDLH 226


>gi|166235597|gb|ABY85510.1| ATP-dependent protease proteolytic subunit [Silene littorea]
          Length = 196

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 71/172 (41%), Positives = 114/172 (66%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  ++E  ++  +   +++L  E+  K++ L+INSPGG V  G+AIY
Sbjct: 22  DVYNRLYRERLLFLGQEVESEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF++P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F   Q  +  
Sbjct: 82  DTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  L  +YV+  GK    V + ++RD  MSA+EA  +G+VD V
Sbjct: 142 LEAEELLKLRXTLTRVYVQRTGKPIWVVSEDMERDVFMSAAEAQAYGIVDLV 193


>gi|116617132|ref|YP_817507.1| clp protease proteolytic subunit [Coffea arabica]
 gi|122153644|sp|A0A360|CLPP_COFAR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|116242188|gb|ABJ89703.1| clp protease proteolytic subunit [Coffea arabica]
          Length = 196

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 71/172 (41%), Positives = 114/172 (66%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+   ++  ++  +   +++L  E+  K++ L+INSPGG V  G+AIY
Sbjct: 22  DVYNRLYRERLLFLGQAVDSEISNQLIGLMIYLSIEDDTKDLYLFINSPGGWVIPGVAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF++P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F   QA +  
Sbjct: 82  DTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQAGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  L  +YV+  GK    V + ++RD  MSA+EA  +G+VD V
Sbjct: 142 LEAEELLKLRETLTRVYVQRTGKPLWVVSEDMERDVFMSATEAQAYGIVDLV 193


>gi|225428533|ref|XP_002284510.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297741435|emb|CBI32566.3| unnamed protein product [Vitis vinifera]
          Length = 269

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 70/172 (40%), Positives = 112/172 (65%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+ + L + RI+F+   I   +A  + +QL+ L A +   +I +Y+N PGG   + +AIY
Sbjct: 94  DLSTVLFRSRIIFIGQPINSMVAQRVISQLVTLAAIDEDADILMYLNCPGGSTYSVLAIY 153

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M +IKP + T C G AAS G+LLL+ GEKGMR+A+PNARI++HQP GG  G   D+ R
Sbjct: 154 DCMAWIKPKVGTVCFGVAASQGALLLAGGEKGMRYAMPNARIMVHQPQGGCGGHVEDVRR 213

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
              + V+ + +++++Y    G+  E+V++  +RD  +SASEA ++G +D +L
Sbjct: 214 QVNEAVQSRHKIDKMYAAFTGQPLEQVQQYTERDRFLSASEAMEFGFIDGIL 265


>gi|11465983|ref|NP_054525.1| ATP-dependent Clp protease proteolytic subunit [Nicotiana tabacum]
 gi|78102563|ref|YP_358703.1| ATP-dependent Clp protease proteolytic subunit [Nicotiana
           sylvestris]
 gi|81301593|ref|YP_398889.1| ATP-dependent Clp protease proteolytic subunit [Nicotiana
           tomentosiformis]
 gi|116527|sp|P12210|CLPP_TOBAC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|122212889|sp|Q33C07|CLPP_NICTO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|122213564|sp|Q3C1K4|CLPP_NICSY RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|1143166|gb|AAA84867.1| ClpP protease [Nicotiana tabacum]
 gi|2924270|emb|CAA77422.1| ATP-dependent protease proteolytic subuni [Nicotiana tabacum]
 gi|77799590|dbj|BAE46679.1| ATP-dependent protease proteolytic subunit [Nicotiana sylvestris]
 gi|80750952|dbj|BAE48028.1| ATP-dependent protease proteolytic subunit [Nicotiana
           tomentosiformis]
          Length = 196

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 70/172 (40%), Positives = 114/172 (66%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  +++  ++  +   +++L  E+  K++ L+INSPGG V  G+AIY
Sbjct: 22  DVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDETKDLYLFINSPGGWVIPGVAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF++P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F   Q  +  
Sbjct: 82  DTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFV 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  L  +YV+  GK    V + ++RD  MSA+EA  +G+VD V
Sbjct: 142 LEAEELLKLRETLTRVYVQRTGKPLWVVSEDMERDVFMSATEAQAYGIVDLV 193


>gi|156573693|gb|ABU85179.1| clp protease proteolytic subunit [Anethum graveolens]
          Length = 197

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 70/172 (40%), Positives = 114/172 (66%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  +++  ++  +   +++L  EN  K++ L+INSPGG V  G+AIY
Sbjct: 22  DVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIENDTKDLYLFINSPGGWVIPGVAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF++P + T CMG AASMGS +L+ GE   R A P+AR+++HQP+  F   Q  +  
Sbjct: 82  DTMQFVRPDVQTICMGLAASMGSFILAGGEITKRLAFPHARVMIHQPASSFYEAQTGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  L  +YV+   K    V + ++RD  MSA+EA  +G+VD V
Sbjct: 142 LEAEELLKLRETLTRVYVQRTDKPLWVVSEDMERDVFMSATEAQAYGIVDVV 193


>gi|156597979|gb|ABU85256.1| clp protease proteolytic subunit [Cycas micronesica]
          Length = 202

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/172 (42%), Positives = 114/172 (66%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F   Q++D +A  +   +++L  E+  K+I  YINSPGG V  G++IY
Sbjct: 22  DVYNRLYRERLLFPGQQVDDEIANQLIGIMMYLNGEDENKDIYPYINSPGGAVIPGISIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           D MQF+ P + T CMG AASMGS +L+ GE   R ALP+AR+++HQP S  + GQA +  
Sbjct: 82  DAMQFVVPDVHTICMGLAASMGSSVLTGGEITKRIALPHARVMIHQPASSYYDGQAGECI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  +  +YV+  GK    +   ++RD  MSA+EA  +G+VD V
Sbjct: 142 MEAEEVLKLRDSITNVYVQRTGKPLWVISGDMERDVFMSATEAQAYGIVDLV 193


>gi|114107157|ref|YP_740142.1| clp protease proteolytic subunit [Daucus carota]
 gi|323149107|ref|YP_004222671.1| clp protease proteolytic subunit [Anthriscus cerefolium]
 gi|122239962|sp|Q0G9T7|CLPP_DAUCA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|113200932|gb|ABI32448.1| clp protease proteolytic subunit [Daucus carota]
 gi|289645600|gb|ADD13663.1| clp protease proteolytic subunit [Anthriscus cerefolium]
          Length = 197

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 70/172 (40%), Positives = 114/172 (66%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  +++  ++  +   +++L  EN  K++ L+INSPGG V  G+AIY
Sbjct: 22  DVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIENDTKDLYLFINSPGGWVIPGVAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF++P + T CMG AASMGS +L+ GE   R A P+AR+++HQP+  F   Q  +  
Sbjct: 82  DTMQFVRPDVQTICMGLAASMGSFILAGGEITKRLAFPHARVMIHQPASSFYEAQTGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  L  +YV+   K    V + ++RD  MSA+EA  +G+VD V
Sbjct: 142 LEAEELLKLRETLTRVYVQRTDKPLWVVSEDMERDVFMSATEAQAYGIVDLV 193


>gi|28261742|ref|NP_783256.1| ATP-dependent Clp protease proteolytic subunit [Atropa belladonna]
 gi|75303626|sp|Q8S8W2|CLPP_ATRBE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|20068356|emb|CAC88069.1| ATP-dependent protease; catalytic subunit [Atropa belladonna]
          Length = 196

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 72/172 (41%), Positives = 113/172 (65%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+   I   ++  +   +++L  E+  KE+ L+INSPGG V  G+AIY
Sbjct: 22  DVYNRLYRERLLFLGQGINSEISNQLIGLMVYLSIEDETKELYLFINSPGGWVIPGIAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           DTMQF++P + T CMG AASMGS +L  GE   R A P+AR+++HQP SG +  Q  +  
Sbjct: 82  DTMQFVRPDVHTVCMGLAASMGSFILVGGEITKRLAFPHARVMMHQPASGYYEAQTGEFV 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  L  +YV+  GK    V + +++D  MSA+EA  +G+VD V
Sbjct: 142 LEAEELLKLRETLTRVYVQRTGKPLWVVSEDMEKDVFMSATEAQAYGIVDLV 193


>gi|329114091|ref|ZP_08242855.1| ATP-dependent Clp protease proteolytic subunit 2 [Acetobacter
           pomorum DM001]
 gi|326696630|gb|EGE48307.1| ATP-dependent Clp protease proteolytic subunit 2 [Acetobacter
           pomorum DM001]
          Length = 226

 Score =  155 bits (393), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 80/195 (41%), Positives = 119/195 (61%), Gaps = 3/195 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
            P   E+   G    ++  +L K+R V + G I+D +A  +  +LL L  E+ Q  I +Y
Sbjct: 32  APEKAEEKTAGAPHGELEHKLFKQRKVLIFGGIDDKIARDVTGRLLALAGESDQP-IDVY 90

Query: 79  INSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +NSPGG V +G  I+D ++F+    PI+    G  AS G+L+ +AG K  RF LPN R L
Sbjct: 91  VNSPGGHVESGDTIHDMIRFVDSIAPINMIGTGWVASAGALIFAAGHKERRFCLPNTRFL 150

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           LHQP GG  G A+DI+  A++I+K++ RLN I+ K  G +YE+V K  DR++ MSA EA 
Sbjct: 151 LHQPMGGVRGPATDIDIEAREIIKMRERLNRIFAKETGHSYEKVAKDTDRNYWMSAKEAI 210

Query: 197 DWGVVDKVLMSRIDI 211
           D+G+V K++    D+
Sbjct: 211 DYGLVTKIISKLSDL 225


>gi|110456628|gb|ABG74755.1| ATP-dependent protease catalytic subunit [Forsythia europaea]
 gi|290489438|gb|ADD31103.1| clp protease proteolytic subunit protein [Ehretia acuminata]
          Length = 196

 Score =  155 bits (393), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 70/172 (40%), Positives = 114/172 (66%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  +++  ++  +   +++L  E+  K++ L+INSPGG V  G+AIY
Sbjct: 22  DVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF++P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F   Q  +  
Sbjct: 82  DTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  L  +YV+  GK    V + ++RD  MSA+EA  +G+VD V
Sbjct: 142 LEAEELLKLRETLTRVYVQRTGKPLWVVSEDMERDVFMSATEAQAYGIVDLV 193


>gi|108773205|ref|YP_635771.1| ATP-dependent Clp protease proteolytic subunit [Chara vulgaris]
 gi|122237366|sp|Q1ACH6|CLPP_CHAVU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|77157861|gb|ABA61902.1| proteolytic subunit 2 of clp protease [Chara vulgaris]
          Length = 219

 Score =  155 bits (393), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 71/172 (41%), Positives = 117/172 (68%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           DIY+RL +ER++F+  +++D +A  +   +++L  E+  KE+ +YINSPGG V AG+A++
Sbjct: 22  DIYNRLYRERLLFLGQRVDDEIANQLIGIMMYLNGEDDSKEMFMYINSPGGSVVAGIAVF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           D MQ++ P ++T CMG AASMGS +L  GE   R ALP+AR+++HQP S  + GQA +  
Sbjct: 82  DAMQYVGPDVTTICMGMAASMGSFILMGGEMTKRIALPHARVMIHQPASSYYDGQAGECL 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  + ++Y+   G+    + + +DRD  MSA EA  +G+VD V
Sbjct: 142 MEAEEVLKLRDCIAKVYMNRTGQPGWVIYRDMDRDIFMSALEAKSYGIVDLV 193


>gi|224103437|ref|XP_002313056.1| predicted protein [Populus trichocarpa]
 gi|222849464|gb|EEE87011.1| predicted protein [Populus trichocarpa]
          Length = 246

 Score =  155 bits (393), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 69/172 (40%), Positives = 111/172 (64%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+ S L + RI+F+   I   +A  + +QL+ L   +   +I +Y+N PGG   + +AIY
Sbjct: 71  DLSSVLFRNRIIFIGQPINSQVAQRVISQLVTLATIDENADILMYLNCPGGSTYSVLAIY 130

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M +IKP + T C G AAS G+LLL+ GEKGMR+A+PNARI++HQP GG  G   D+ R
Sbjct: 131 DCMSWIKPKVGTVCFGVAASQGALLLAGGEKGMRYAMPNARIMIHQPQGGCGGHVEDVRR 190

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
              + V+ + +++++Y    G+  E+V++  +RD  +S SEA ++G++D +L
Sbjct: 191 QVNEAVQARHKIDQMYAVFTGQPLEKVQQYTERDRFLSTSEAMEFGLIDGIL 242


>gi|255556085|ref|XP_002519077.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis]
 gi|223541740|gb|EEF43288.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis]
          Length = 277

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 69/172 (40%), Positives = 110/172 (63%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+ S L + RI+F+   I   +A  + +QL+ L   +   +I +Y+N PGG   + +AIY
Sbjct: 102 DLQSVLFRNRIIFIGQPINSQVAQRVISQLVTLATIDENSDILMYLNCPGGSTYSVLAIY 161

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M +IKP + T C G AAS G+LLL+ GEKGMR+A+PNARI++HQP GG  G   D+ R
Sbjct: 162 DCMSWIKPKVGTVCFGVAASQGALLLAGGEKGMRYAMPNARIMIHQPQGGCGGHVEDVRR 221

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
              + V+ + +++ +Y    G+  E+V++  +RD  +S SEA ++G++D +L
Sbjct: 222 QVNEAVQSRHKVDRMYAAFTGQPLEKVQQYTERDRFLSTSEAMEFGLIDGIL 273


>gi|290489440|gb|ADD31104.1| clp protease proteolytic subunit protein [Ilex cornuta]
          Length = 196

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 70/172 (40%), Positives = 114/172 (66%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  +++  ++  +   +++L  E+  K++ L+INSPGG V  G+AIY
Sbjct: 22  DVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF++P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F   Q  +  
Sbjct: 82  DTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  L  +YV+  GK    V + ++RD  MSA+EA  +G+VD V
Sbjct: 142 LEAEELLKLRETLTRVYVQRTGKPLWVVSEDMERDVFMSATEAQAYGIVDLV 193


>gi|296139185|ref|YP_003646428.1| endopeptidase Clp [Tsukamurella paurometabola DSM 20162]
 gi|296027319|gb|ADG78089.1| Endopeptidase Clp [Tsukamurella paurometabola DSM 20162]
          Length = 222

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 80/193 (41%), Positives = 126/193 (65%), Gaps = 3/193 (1%)

Query: 19  VPMVVEQTNRGE-RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +P   E+   GE R  D Y++L  ERI+F+  QI++  A  + AQLL LE+++P ++I++
Sbjct: 25  IPQFFERAANGEQRVMDPYAKLFDERIIFLKTQIDEVSANDVMAQLLVLESQDPDRDITI 84

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +   + IYDTMQ++   ++T  +G AAS  ++LL+ G  G R ALPN+ +L+
Sbjct: 85  YINSPGGSLYDALGIYDTMQYVHCDVATVVLGTAASAAAILLAGGTPGKRAALPNSTVLI 144

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP   G   GQ SD+E  A ++ + + RL+EI   + G+T E++ K  DRD+I++A +A
Sbjct: 145 HQPRTGGAMRGQVSDLEIQAAEMERARNRLDEILASHTGQTVEQIRKDTDRDNILTADQA 204

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD V   R
Sbjct: 205 KEYGIVDTVFPYR 217


>gi|302024225|ref|ZP_07249436.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus suis
           05HAS68]
          Length = 168

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 74/162 (45%), Positives = 111/162 (68%), Gaps = 2/162 (1%)

Query: 46  FVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIST 105
            +TG +ED+MA  I AQLL+L+A++P K+I LY+N+PGG V+AG+AI DTM FIK  + T
Sbjct: 1   MLTGPVEDNMANSIIAQLLYLDAQDPTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADVQT 60

Query: 106 FCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP--SGGFSGQASDIERHAQDIVKIKR 163
             MG AASMG+++ S+G KG RF LPNA  ++HQP    G   Q +D+   A+ ++K + 
Sbjct: 61  IVMGTAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRN 120

Query: 164 RLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           +L +I   N GKT +++ K  +RD+ MSA E   +G +D+++
Sbjct: 121 KLEKILADNSGKTVKQIHKDAERDYWMSAEETLAYGFIDQIV 162


>gi|331695495|ref|YP_004331734.1| ATP-dependent Clp protease proteolytic subunit [Pseudonocardia
           dioxanivorans CB1190]
 gi|326950184|gb|AEA23881.1| ATP-dependent Clp protease proteolytic subunit [Pseudonocardia
           dioxanivorans CB1190]
          Length = 236

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 83/184 (45%), Positives = 115/184 (62%)

Query: 22  VVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS 81
           V++    G     ++ RLL+ERIVF+  +++D +A  I  QLL L A +P  +I+ YINS
Sbjct: 50  VLQHVGVGMGGDPVFDRLLEERIVFLGKEVDDEIANRITGQLLLLAAADPAADITFYINS 109

Query: 82  PGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
           PGG VTAGMAIYDTMQ I P ++T+ +G AASMG  LL+AG  G R AL + RIL+HQPS
Sbjct: 110 PGGSVTAGMAIYDTMQVIAPDVATYAVGFAASMGQFLLTAGAPGKRHALAHTRILMHQPS 169

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
               G  +DI   A     +KR +  +  ++ G+  E +    DRDH  +A EA D+G+V
Sbjct: 170 ASLGGTHTDIAIRAGASAGMKREIARLTARHSGRDVETIIADADRDHWFTAEEARDYGLV 229

Query: 202 DKVL 205
           D V+
Sbjct: 230 DTVI 233


>gi|255961322|ref|YP_003097504.1| ATP-dependent Clp protease proteolytic subunit [Selaginella
           moellendorffii]
 gi|254941494|gb|ACT89009.1| ATP-dependent Clp protease proteolytic subunit [Selaginella
           moellendorffii]
          Length = 206

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 74/174 (42%), Positives = 115/174 (66%), Gaps = 1/174 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D ++RL +ER++F+   ++D +A  I   +++L  EN  K+I LYINSPGG V AG+++Y
Sbjct: 22  DTHNRLYRERLLFLGQNMDDEIANQIICIMMYLNGENRSKDIYLYINSPGGAVLAGISVY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           D MQF+ P + T C+G AASMGS +L+ G    R ALP+AR+++HQP+  F  GQA +  
Sbjct: 82  DMMQFVVPDVHTICVGLAASMGSFILTGGGITKRIALPHARVMIHQPASSFYEGQAGECL 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             A++I+K++  +  IY +  GK    V + ++RD  MSA EA  +G++D V+M
Sbjct: 142 MEAEEILKLRDCITSIYARKTGKPLWVVSEDMERDVFMSAREARVYGIIDLVVM 195


>gi|119368524|ref|YP_913212.1| ATP-dependent protease proteolytic subunit [Gossypium barbadense]
 gi|125863802|sp|A0ZZ60|CLPP_GOSBA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|119224886|dbj|BAF41272.1| ATP-dependent protease proteolytic subunit [Gossypium barbadense]
          Length = 196

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 71/172 (41%), Positives = 114/172 (66%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  +++  ++  +   +++L  EN  K++ L+INSPGG V  G+AIY
Sbjct: 22  DVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIENDTKDLYLFINSPGGWVIPGVAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF++P + T CMG AASMGS LL+ GE   R A P+AR+++HQP+  F   Q  +  
Sbjct: 82  DTMQFVQPDVHTICMGLAASMGSFLLAGGEITKRLAFPHARVMIHQPASSFYEAQTGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  L  +YV+  GK    V + ++R+  MSA+EA   G+VD V
Sbjct: 142 LEAEELLKLRESLTRVYVQRTGKPLWVVSEDMERNVFMSATEAQAHGIVDLV 193


>gi|296399222|gb|ADH10397.1| clp protease proteolytic subunit [Selaginella moellendorffii]
          Length = 206

 Score =  155 bits (392), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 74/174 (42%), Positives = 115/174 (66%), Gaps = 1/174 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D ++RL +ER++F+   ++D +A  I   +++L  EN  K+I LYINSPGG V AG+++Y
Sbjct: 22  DTHNRLYRERLLFLGQNMDDEIANQIICIMMYLNGENRSKDIYLYINSPGGAVLAGISVY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           D MQF+ P + T C+G AASMGS +L+ G    R ALP+AR+++HQP+  F  GQA +  
Sbjct: 82  DMMQFVVPDVHTICVGLAASMGSFILTGGGITKRIALPHARVMIHQPASSFYEGQAGECL 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             A++I+K++  +  IY +  GK    V + ++RD  MSA EA  +G++D V+M
Sbjct: 142 MEAEEILKLRDCITSIYARKTGKPLWVVSEDMERDVFMSAREARVYGIIDLVVM 195


>gi|313199727|ref|YP_004021341.1| clp protease proteolytic subunit [Theobroma cacao]
 gi|309321291|gb|ADO64834.1| clp protease proteolytic subunit [Theobroma cacao]
 gi|328924805|gb|ADO64915.2| clp protease proteolytic subunit [Theobroma cacao]
          Length = 196

 Score =  155 bits (392), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 71/172 (41%), Positives = 113/172 (65%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           DIY+RL +ER++F+  +++  ++  +   +++L  EN  KE+ L+INSPGG +  G+AIY
Sbjct: 22  DIYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIENDTKELYLFINSPGGWIIPGVAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF++P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F   Q  +  
Sbjct: 82  DTMQFVQPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  +  +YV+  GK    V + ++RD  MSA+EA   G+VD V
Sbjct: 142 LEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDIFMSATEAQAHGIVDLV 193


>gi|167391831|ref|YP_001671708.1| ATP-dependent Clp protease proteolytic subunit [Carica papaya]
 gi|166344158|gb|ABY86808.1| ATP-dependent Clp protease proteolytic subunit [Carica papaya]
          Length = 196

 Score =  155 bits (392), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 70/172 (40%), Positives = 114/172 (66%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  +++  ++  +   +++L  E+  K++ L+INSPGG V  G+AIY
Sbjct: 22  DVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIESDTKDLYLFINSPGGWVIPGVAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF++P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F   Q  +  
Sbjct: 82  DTMQFVQPDVQTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQVGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  L  +YV+  GK    V + ++RD  MSA+EA  +G+VD V
Sbjct: 142 LEAEELLKLRETLTRVYVQRTGKPLWVVSEDMERDVFMSATEAQAYGIVDLV 193


>gi|81176276|ref|YP_398353.1| ATP-dependent Clp protease proteolytic subunit [Lactuca sativa]
 gi|122212017|sp|Q332V2|CLPP_LACSA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|78675194|dbj|BAE47620.1| ATP-dependent clp protease proteolytic subunit [Lactuca sativa]
 gi|88657007|gb|ABD47257.1| clp protease proteolytic subunit [Lactuca sativa]
          Length = 196

 Score =  155 bits (392), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 71/172 (41%), Positives = 115/172 (66%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           DIY+RL +ER++F+  +++  ++  +   +++L  E+  K++ L+INSPGG V  G+A+Y
Sbjct: 22  DIYNRLYRERLLFLGQEVDSEISNQLIGLMIYLSIEDDTKDLYLFINSPGGWVIPGVALY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS-DIE 152
           DTMQF++P + T CMG AASMGS +L  GE   R A P+AR+++HQP+G FS  A+ +  
Sbjct: 82  DTMQFVQPDVHTICMGSAASMGSFILVGGEITKRLAFPHARVMIHQPAGSFSEVATGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
               +++K++  L  +YV+  GK    V + ++RD  MSA+EA  +G+VD V
Sbjct: 142 LEVGELLKLRETLTRVYVQRTGKPLWVVSEDMERDVFMSATEAQAYGIVDLV 193


>gi|290489432|gb|ADD31100.1| clp protease proteolytic subunit protein [Antirrhinum majus]
          Length = 196

 Score =  155 bits (392), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 70/172 (40%), Positives = 113/172 (65%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+   ++  ++  +   +++L  E+  K++ L+INSPGG V  G+AIY
Sbjct: 22  DVYNRLYRERLLFLGQDVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVVPGVAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF++P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F   Q  +  
Sbjct: 82  DTMQFVRPEVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  L  +YV+  GK    V + ++RD  MSA+EA  +G+VD V
Sbjct: 142 LEAEELLKLRETLTRVYVQRTGKPLWVVSEDMERDVFMSATEAQAYGIVDLV 193


>gi|290489448|gb|ADD31108.1| clp protease proteolytic subunit protein [Nerium oleander]
          Length = 196

 Score =  155 bits (391), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 70/172 (40%), Positives = 113/172 (65%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+   ++  ++  +   +++L  E+  K++ L+INSPGG V  G+AIY
Sbjct: 22  DVYNRLYRERLLFLGQAVDSEISNQLIGLMIYLSIEDDNKDLYLFINSPGGWVIPGVAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF++P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F   Q  +  
Sbjct: 82  DTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  L  +YV+  GK    V + ++RD  MSA+EA  +G+VD V
Sbjct: 142 LEAEELLKLRETLTRVYVQRTGKPLWVVSEDMERDVFMSATEAQAYGIVDLV 193


>gi|34501388|ref|NP_904176.1| ATP-dependent Clp protease proteolytic subunit [Physcomitrella
           patens subsp. patens]
 gi|68052159|sp|Q6YXM7|CLPP_PHYPA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|34494758|dbj|BAC85025.1| ATP-dependent protease proteolytic subunit [Physcomitrella patens
           subsp. patens]
          Length = 199

 Score =  155 bits (391), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 72/173 (41%), Positives = 116/173 (67%), Gaps = 2/173 (1%)

Query: 34  DIYS-RLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI 92
           D+Y+ RL +ER++F+   ++D +A  +   +++L  E+  K++ LYINSPGG V AG+++
Sbjct: 22  DVYNNRLYRERLLFLGQHVDDEIANQLIGIMMYLNGEDENKDMYLYINSPGGAVLAGISV 81

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDI 151
           YD MQF+ P + T CMG AASMGS +L+ GE   R ALP+AR+++HQP S  + GQA + 
Sbjct: 82  YDAMQFVVPDVHTICMGLAASMGSFILAGGEITKRIALPHARVMIHQPASSYYDGQAGEC 141

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
              A++++K++  +  +YV+  GK    + + ++RD  MSA EA  +G+VD V
Sbjct: 142 IMEAEEVLKLRDYITRVYVQRIGKPLWVISEDMERDVFMSAQEAKTYGIVDLV 194


>gi|159161186|ref|YP_001542472.1| clp protease proteolytic subunit [Ceratophyllum demersum]
 gi|148508469|gb|ABQ81476.1| clp protease proteolytic subunit [Ceratophyllum demersum]
 gi|227481143|emb|CAP62522.1| ATP-dependent protease proteolytic subunit [Ceratophyllum demersum]
          Length = 202

 Score =  155 bits (391), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 73/172 (42%), Positives = 112/172 (65%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           DIY+RL +ER++F+  +I+  M+  I   +++L  E+  K++ L+INSPGG V  G+A+Y
Sbjct: 22  DIYNRLYRERLLFLGQEIDSEMSNQIVGLMVYLSIEDDTKDLYLFINSPGGWVIPGIALY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF+ P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F   QA +  
Sbjct: 82  DTMQFVPPDVHTICMGLAASMGSFVLVGGEITKRLAFPHARVMIHQPASSFYEAQAGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  L  +YV+  G     V + ++RD  MSA+EA   G+VD V
Sbjct: 142 LEAEELLKLRETLTRVYVQRTGNPLWVVSEDMERDVFMSATEAQAHGIVDLV 193


>gi|2921510|gb|AAC04810.1| clp-like energy-dependent protease [Fritillaria agrestis]
          Length = 267

 Score =  155 bits (391), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 70/172 (40%), Positives = 111/172 (64%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+ S L + RI+F+   +   +A  + +QL+ L   + + +I +Y+N PGG   + +AIY
Sbjct: 92  DLSSVLFRNRIIFIGQPVNSQVAQRVISQLVTLATIDEESDILVYLNCPGGSTYSILAIY 151

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M +IKP + T C G AAS G+LLL+ GEKGMR+ +PNARI++HQP  G  G   D+ R
Sbjct: 152 DCMSWIKPKVGTVCFGVAASQGALLLAGGEKGMRYTMPNARIMIHQPQSGCGGHVEDVRR 211

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
              + V+ + +++++Y    G+T E+V++  +RD   SASEA ++G+VD VL
Sbjct: 212 QVNEAVQSRHKIDQMYAAFTGQTLEKVQEYTERDRFFSASEALEFGLVDGVL 263


>gi|290489450|gb|ADD31109.1| clp protease proteolytic subunit protein [Phoradendron serotinum]
          Length = 196

 Score =  154 bits (390), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 72/172 (41%), Positives = 112/172 (65%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           DIY+RL +ER++F+   ++  ++  + + +++L  EN  K+   +INSPGG V  G+AIY
Sbjct: 22  DIYNRLYRERLLFLGQGVDSEISNQLISLMVYLSIENETKDFYFFINSPGGWVIPGVAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           DTMQF++P + T CMG AASMGS +L  G    R A P+AR+++HQP S  F  Q  +  
Sbjct: 82  DTMQFVRPDVQTICMGLAASMGSFILVGGSITKRLAFPHARVMIHQPASSYFEAQTVEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  L ++YV+  GKT   V + ++RD  MSA+EA   G+VD V
Sbjct: 142 LEAEELLKLRETLTQVYVQRTGKTLWIVSEDMERDVFMSATEAQTHGIVDLV 193


>gi|223931051|ref|YP_002586911.1| clp protease proteolytic subunit [Syntrichia ruralis]
 gi|219562265|gb|ACL27596.1| clp protease proteolytic subunit [Syntrichia ruralis]
          Length = 197

 Score =  154 bits (390), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 70/169 (41%), Positives = 113/169 (66%), Gaps = 1/169 (0%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           +RL +ER++F+   ++D +A  +   +++L  E+  K++ LYINSPGG V AG+++YD M
Sbjct: 24  NRLYRERLLFLGQHVDDEIANQLIGIMMYLNGEDESKDMYLYINSPGGAVLAGISVYDAM 83

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIERHA 155
           QF+ P + T CMG AASMGS +L+ GE   R ALP+AR+++HQP S  + GQA +    A
Sbjct: 84  QFVVPDVHTICMGLAASMGSFILTGGEITKRIALPHARVMIHQPASSYYDGQAGECMMEA 143

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           ++++K++  +  +YV+  GK    + + ++RD  MSA EA  +G+VD V
Sbjct: 144 EEVLKLRDYITRVYVQRIGKPLWLISEDMERDVFMSAKEAKTYGIVDAV 192


>gi|166201959|gb|ABY84433.1| ATP-dependent protease proteolytic subunit [Lychnis flos-jovis]
          Length = 196

 Score =  154 bits (389), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 71/172 (41%), Positives = 113/172 (65%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  ++E  ++  I   +++L  E+  K++ L+INSPGG V +G+ IY
Sbjct: 22  DVYNRLYRERLLFLGQEVESEISNQIIGLMVYLSIEDDTKDLYLFINSPGGSVISGVGIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF++P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F   Q  +  
Sbjct: 82  DTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  L  +YV+  GK    V + ++RD  MSA+EA   G+VD V
Sbjct: 142 LEAEELLKLRETLTRVYVQRTGKPIWVVSEDMERDVFMSAAEAQAHGIVDLV 193


>gi|166235641|gb|ABY85552.1| ATP-dependent protease proteolytic subunit [Silene zawadskii]
          Length = 196

 Score =  154 bits (389), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 71/174 (40%), Positives = 115/174 (66%), Gaps = 1/174 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  +++  ++  +   +++L  E+  K++ L+INSPGG V +G+AIY
Sbjct: 22  DVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVISGVAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF++P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F   Q  +  
Sbjct: 82  DTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             A++++K++  L  +YV+  GK    V + ++RD  MSA+EA   G+VD V M
Sbjct: 142 LEAEELLKLRETLTRVYVQRTGKPIWVVSEDMERDVFMSAAEAQAHGIVDLVGM 195


>gi|296936697|gb|ADH94369.1| photosystem II CP47 chlorophyll apoprotein [Syzygium cumini]
          Length = 196

 Score =  154 bits (389), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 70/172 (40%), Positives = 113/172 (65%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  +++  ++  +   +++L  EN  K++ L+INSPGG V  G+AIY
Sbjct: 22  DVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIENDNKDLYLFINSPGGWVIPGVAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF++P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F   Q  +  
Sbjct: 82  DTMQFVQPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  +  +YV+  GK    V + ++RD  MSA+EA   G+VD V
Sbjct: 142 LEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLV 193


>gi|78779794|ref|YP_397906.1| ATP-dependent Clp protease-like protein [Prochlorococcus marinus
           str. MIT 9312]
 gi|123969044|ref|YP_001009902.1| ATP-dependent Clp protease-like protein [Prochlorococcus marinus
           str. AS9601]
 gi|78713293|gb|ABB50470.1| Endopeptidase Clp [Prochlorococcus marinus str. MIT 9312]
 gi|123199154|gb|ABM70795.1| Clp protease proteolytic subunit [Prochlorococcus marinus str.
           AS9601]
          Length = 220

 Score =  154 bits (389), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 83/193 (43%), Positives = 118/193 (61%), Gaps = 19/193 (9%)

Query: 41  KERIVFV----------TGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG------- 83
           KERIV++            Q+   +  LI AQLL+LE E+P+K I  YINS G       
Sbjct: 27  KERIVYLGLPLFSDDDAKRQLGMDVTELIIAQLLYLEFEDPEKPIYFYINSTGTSWYTGD 86

Query: 84  --GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
             G  T   AI DT+ +IKPP+ T C+GQA    +++LS+G KG R ALP+A I+LHQP 
Sbjct: 87  AVGFETEAFAICDTISYIKPPVHTICIGQAMGTAAVILSSGTKGQRAALPHASIVLHQPI 146

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            G  GQA+DI+  A++++K K+ + EI  +N GKT EE+ K  DR   ++  EA D+GV+
Sbjct: 147 SGARGQATDIQIRAEEVLKNKKSMLEILSRNTGKTIEELSKDSDRMSYLNPQEALDYGVI 206

Query: 202 DKVLMSRIDIEEK 214
           D++L S+ D+  K
Sbjct: 207 DRILTSQKDLPNK 219


>gi|91214166|ref|YP_538790.1| ATP-dependent Clp protease proteolytic subunit [Glycine max]
 gi|122202485|sp|Q2PMR0|CLPP_SOYBN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|83595767|gb|ABC25148.1| clp protease proteolytic subunit [Glycine max]
          Length = 196

 Score =  154 bits (389), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 70/172 (40%), Positives = 114/172 (66%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           DIY+RL +ER++F+  +++  ++  + + +++L  E   K++ L+INSPGG V  G+AIY
Sbjct: 22  DIYNRLYRERLLFLGQEVDSEISNQLISLMVYLSIEEENKDLYLFINSPGGWVIPGIAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF++P + T CMG AASMGS LL+ GE   R A P+AR+++HQP+  F   Q  +  
Sbjct: 82  DTMQFVQPDVQTVCMGLAASMGSFLLAGGEITKRLAFPHARVMIHQPASSFYEAQTGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  +  +YV+  GK    + + ++RD  MSA+EA   G+VD V
Sbjct: 142 LEAEELLKMRETITRVYVQRTGKPLWVISEDMERDVFMSAAEAQAHGIVDLV 193


>gi|313199614|ref|YP_004021229.1| clp protease proteolytic subunit [Isoetes flaccida]
 gi|291575343|gb|ADE18056.1| clp protease proteolytic subunit [Isoetes flaccida]
          Length = 205

 Score =  154 bits (389), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 73/172 (42%), Positives = 115/172 (66%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+++RL +ER++F+   I+D +A      L++L  E+  K+I LYINSPGG V AG+++Y
Sbjct: 22  DVHNRLYRERLLFLGQHIDDEIANQTICILMYLNGEDQSKDIYLYINSPGGAVLAGISVY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           D MQ+I P ++T C+G AASMGS +L+ GE   R ALP+AR+++HQP   F  GQA +  
Sbjct: 82  DIMQYIIPNVNTICVGLAASMGSFILAGGEITKRIALPHARVMIHQPGSSFYDGQAGECL 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  + +IYV+  GK    V + ++RD  MSA EA  +G+ D +
Sbjct: 142 VEAEEMLKLRDCVTKIYVQRTGKPLWVVSEDMERDVFMSAEEAKVYGITDPI 193


>gi|183217765|ref|YP_001837385.1| ATP-dependent Clp protease proteolytic subunit [Guizotia
           abyssinica]
 gi|179366280|gb|ACB86551.1| clp protease proteolytic subunit [Guizotia abyssinica]
          Length = 196

 Score =  154 bits (388), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 70/172 (40%), Positives = 115/172 (66%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           DIY+RL +ER++F+  +++  ++  +   +++L  E+  +++ L+INSPGG V  G+A+Y
Sbjct: 22  DIYNRLYRERLLFLGQEVDSEISNQLIGLMIYLSIEDDTQDLYLFINSPGGWVIPGVALY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS-DIE 152
           DTMQF++P + T CMG AASMGS +L  GE   R A P+AR+++HQP+G FS  A+ +  
Sbjct: 82  DTMQFVQPDVHTICMGSAASMGSFILVGGEITKRLAFPHARVMIHQPAGSFSEVATGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
               +++K++  L  +YV+  GK    V + ++RD  MSA+EA  +G+VD V
Sbjct: 142 LEVGELLKLRETLTRVYVQRTGKPLWVVSEDMERDVFMSATEAQAYGIVDLV 193


>gi|108802666|ref|YP_636324.1| ATP-dependent Clp protease proteolytic subunit [Eucalyptus globulus
           subsp. globulus]
 gi|122219170|sp|Q49KX3|CLPP_EUCGG RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|60460832|gb|AAX21052.1| photosystem II CP47 chlorophyll apoprotein [Eucalyptus globulus
           subsp. globulus]
          Length = 196

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 70/172 (40%), Positives = 113/172 (65%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  +++  ++  +   +++L  EN  K++ L+INSPGG V  G+AIY
Sbjct: 22  DVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIENDNKDLYLFINSPGGWVIPGVAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF++P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F   Q  +  
Sbjct: 82  DTMQFVQPDVHTICMGLAASMGSFVLVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  +  +YV+  GK    V + ++RD  MSA+EA   G+VD V
Sbjct: 142 LEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLV 193


>gi|166235663|gb|ABY85573.1| ATP-dependent protease proteolytic subunit [Silene sorensenis]
          Length = 196

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 70/172 (40%), Positives = 114/172 (66%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  +++  ++  +   +++L  E+  K++ L+INSPGG V +G+AIY
Sbjct: 22  DVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVISGVAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF++P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F   Q  +  
Sbjct: 82  DTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  L  +YV+  GK    V + ++RD  MSA+EA   G+VD V
Sbjct: 142 LEAEELLKLRETLTRVYVQRTGKPIWVVSEDMERDVFMSAAEAQAHGIVDLV 193


>gi|86358671|ref|YP_470563.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli CFN
           42]
 gi|116243121|sp|Q2K5Q0|CLPP3_RHIEC RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
           AltName: Full=Endopeptidase Clp 3
 gi|86282773|gb|ABC91836.1| endopeptidase Clp, subunit 3 protein [Rhizobium etli CFN 42]
          Length = 194

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 75/175 (42%), Positives = 113/175 (64%), Gaps = 1/175 (0%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           + L K R +F+ G I   +A  +C+QL+ L A +  ++I +Y+NSPGG V +G +I+D +
Sbjct: 21  ANLFKSRSIFIYGPINQELAQKVCSQLVALAAAS-DEDIRIYVNSPGGHVESGDSIHDMV 79

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQ 156
           +FIKP +     G  AS G+L+  A  +  R  LPN R LLHQPSGG  G ASDIE  A+
Sbjct: 80  KFIKPKVWMIGTGWVASAGALIYVAAPRERRLCLPNTRFLLHQPSGGTRGMASDIEIQAR 139

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           +I+K+  RLN+I  +  G+  E++ K  DRD+ +SA EA D+G+V +++ S+ DI
Sbjct: 140 EIIKMNERLNKIMAEATGQPLEKIAKDTDRDYWLSAEEAKDYGLVSRIVTSQADI 194


>gi|308745997|ref|YP_003934583.1| clp protease proteolytic subunit [Cheilanthes lindheimeri]
 gi|302375430|gb|ADL29804.1| clp protease proteolytic subunit [Cheilanthes lindheimeri]
          Length = 200

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 71/177 (40%), Positives = 115/177 (64%), Gaps = 1/177 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  Q++D +A  +   +++L  E+  K++ LY+NSPGG V AG+++Y
Sbjct: 22  DVYNRLYRERLLFLGQQVDDEIANQLIGIMMYLNGEDQAKDMYLYVNSPGGAVLAGISVY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           D MQF+ P + T CMG AASMGS +L+ GE   R ALP+AR+++HQP S  + GQA +  
Sbjct: 82  DAMQFVVPDVHTICMGLAASMGSSILAGGEITRRIALPHARVMIHQPASSYYDGQAGECV 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
             A++  K++  +  +Y +  GK    + + ++RD   SA EA D+GV D V +  +
Sbjct: 142 MEAEEASKLRDCITRVYAQRTGKPLWIISEDMERDVFSSAEEAQDYGVADLVALENV 198


>gi|94502515|ref|YP_588142.1| ATP-dependent Clp protease proteolytic subunit [Helianthus annuus]
 gi|122179559|sp|Q1KXT4|CLPP_HELAN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|88656919|gb|ABD47170.1| clp protease proteolytic subunit [Helianthus annuus]
          Length = 196

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 70/172 (40%), Positives = 115/172 (66%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           DIY+RL +ER++F+  +++  ++  +   +++L  E+  +++ L+INSPGG V  G+A+Y
Sbjct: 22  DIYNRLYRERLLFLGQEVDSEISNQLIGLMIYLSIEDDTQDLYLFINSPGGWVIPGVALY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS-DIE 152
           DTMQF++P + T CMG AASMGS +L  GE   R A P+AR+++HQP+G FS  A+ +  
Sbjct: 82  DTMQFVQPDVHTICMGSAASMGSFILVGGEITKRLAFPHARVMIHQPAGSFSEVATGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
               +++K++  L  +YV+  GK    V + ++RD  MSA+EA  +G+VD V
Sbjct: 142 LEVGELLKLRETLTRVYVQRTGKPVWVVSEDMERDVFMSATEAQAYGIVDLV 193


>gi|317046198|ref|YP_004072487.1| ATP-dependent protease [Corynocarpus laevigata]
 gi|309252915|gb|ADO60335.1| ATP-dependent protease [Corynocarpus laevigata]
          Length = 195

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/172 (41%), Positives = 113/172 (65%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           DIY+RL +ER++F+   ++  ++  + A +++L  E+  K++ L+INSPGG V  G+AIY
Sbjct: 22  DIYNRLYRERLLFLGQAVDSEISNQLIALMVYLSTESETKDLYLFINSPGGWVIPGVAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF++P + T C+G AASMGS +L  G    R ALP+AR+++HQPS  F   Q  +  
Sbjct: 82  DTMQFVRPDVQTVCLGLAASMGSFILVGGAITKRLALPHARVMIHQPSSAFYEAQTGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  L  +YV+  GK    V + ++RD  MSA+EA   G+VD V
Sbjct: 142 LEAEELLKLRETLTMVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLV 193


>gi|126696837|ref|YP_001091723.1| ATP-dependent Clp protease-like protein [Prochlorococcus marinus
           str. MIT 9301]
 gi|126543880|gb|ABO18122.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9301]
          Length = 220

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 83/193 (43%), Positives = 118/193 (61%), Gaps = 19/193 (9%)

Query: 41  KERIVFV----------TGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG------- 83
           KERIV++            Q+   +  LI AQLL+LE E+P+K I  YINS G       
Sbjct: 27  KERIVYLGLPLFSDDDAKRQLGMDVTELIIAQLLYLEFEDPEKPIYFYINSTGTSWYTGD 86

Query: 84  --GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
             G  T   AI DT+ +IKPP+ T C+GQA    +++LS+G KG R ALP+A I+LHQP 
Sbjct: 87  AVGFETEAFAICDTISYIKPPVHTICIGQAMGTAAVILSSGTKGHRAALPHASIVLHQPI 146

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            G  GQA+DI+  A++++K K+ + EI  +N GKT EE+ K  DR   ++  EA D+GV+
Sbjct: 147 SGARGQATDIQIRAEEVLKNKKSMLEILSRNTGKTIEELSKDSDRMSYLNPQEALDYGVI 206

Query: 202 DKVLMSRIDIEEK 214
           D++L S+ D+  K
Sbjct: 207 DRILTSQKDLPNK 219


>gi|13518463|ref|NP_084822.1| ATP-dependent Clp protease proteolytic subunit [Lotus japonicus]
 gi|18202721|sp|Q9BBQ9|CLPP_LOTJA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|13359004|dbj|BAB33221.1| ATP-dependent protease subunit [Lotus japonicus]
          Length = 196

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 69/172 (40%), Positives = 115/172 (66%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           DIY+RL +ER++F+  ++   ++  +   +++L  E+ +K++ L+INSPGG V  G+AIY
Sbjct: 22  DIYNRLYRERLLFLGQEVNSEISNQLIGLMVYLSIEDDKKDLYLFINSPGGWVIPGIAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF++P + T CMG AASMGS +L+ G+   R A P+AR+++HQP+  F   Q  +  
Sbjct: 82  DTMQFVQPDVQTVCMGLAASMGSFVLAGGKITKRLAFPHARVMIHQPASSFYEAQTGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  +  +YV+  GK    V + ++RD  MSA+EA  +G+VD V
Sbjct: 142 LEAEELLKLRETITRVYVQRTGKPLWLVSEDMERDVFMSAAEAQAYGIVDLV 193


>gi|290489458|gb|ADD31113.1| clp protease proteolytic subunit protein [Cornus florida]
          Length = 196

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 69/172 (40%), Positives = 114/172 (66%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  +++  ++  +   +++L  E+  K++ L+INSPGG V  G+AI+
Sbjct: 22  DVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGIAIF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           DTMQF++P + T CMG AASMGS +L  GE   R A P+AR+++HQP S  +  Q  +  
Sbjct: 82  DTMQFVQPDVHTICMGMAASMGSFILVGGEITKRLAFPHARVMIHQPASAYYEAQTGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  L  +YV+  GK    V + ++RD  MSA+EA  +G+VD V
Sbjct: 142 LEAEELLKLRETLTRVYVQRTGKPLWVVSEDMERDVFMSATEAQAYGIVDLV 193


>gi|190892811|ref|YP_001979353.1| endopeptidase Clp protein, subunit 3 [Rhizobium etli CIAT 652]
 gi|190698090|gb|ACE92175.1| endopeptidase Clp protein, subunit 3 [Rhizobium etli CIAT 652]
          Length = 194

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 75/175 (42%), Positives = 112/175 (64%), Gaps = 1/175 (0%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           + L K R +F+ G I   +A  +C+QL+ L A +  ++I +Y+NSPGG V +G +I+D +
Sbjct: 21  ANLFKSRSIFIYGPINQELAQKVCSQLVALAAAS-DEDIRIYVNSPGGHVESGDSIHDMV 79

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQ 156
           +FIKP +     G  AS G+L+  A  K  R  LPN R LLHQPSGG  G ASDIE  A+
Sbjct: 80  KFIKPKVWMIGTGWVASAGALIYVAAPKEQRLCLPNTRFLLHQPSGGTRGMASDIEIQAR 139

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           +I+K+  RLN+I     G+  +++ K  DRD+ +SA EA D+G+V +++ S+ DI
Sbjct: 140 EIIKMNERLNKIMAAATGQPLDKIAKDTDRDYWLSAEEAKDYGLVSRIVTSQADI 194


>gi|218461627|ref|ZP_03501718.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli Kim
           5]
          Length = 194

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 75/175 (42%), Positives = 112/175 (64%), Gaps = 1/175 (0%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           + L K R +F+ G I   +A  +C+QL+ L A +   +I +Y+NSPGG V +G +I+D +
Sbjct: 21  ANLFKSRSIFIYGPINQELAQKVCSQLVALAAAS-DDDIRIYVNSPGGHVESGDSIHDMV 79

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQ 156
           +FIKP +     G  AS G+L+  A  K  R  LPN R LLHQPSGG  G ASDIE  A+
Sbjct: 80  KFIKPKVWMIGTGWVASAGALIYVAAPKEQRLCLPNTRFLLHQPSGGTRGMASDIEIQAR 139

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           +I+K+  RLN+I  +  G+  +++ K  DRD+ +SA EA D+G+V +++ S+ DI
Sbjct: 140 EIIKMNERLNKIMAEATGQPLDKIAKDTDRDYWLSAEEAKDYGLVSRIVTSQADI 194


>gi|290489464|gb|ADD31116.1| clp protease proteolytic subunit protein [Gunnera manicata]
          Length = 198

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/193 (37%), Positives = 126/193 (65%), Gaps = 3/193 (1%)

Query: 19  VPMVVEQTNRGERSY--DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E +Y  DIY+RL + RI+F+  ++   ++  + + L++L  E  +K++ 
Sbjct: 5   VPRVPHRIPGEEDAYWVDIYNRLYRNRIMFLGQEVSSEISNQLISLLVYLTIEEDRKDVF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+A+YDTM+F++P I T CMG AASMGS LL+ GE   R A P+AR++
Sbjct: 65  LFINSPGGWVVPGVALYDTMRFVQPEIHTICMGMAASMGSFLLAGGEITKRIAFPHARVM 124

Query: 137 LHQPSGGF-SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP+  F   +  +    +++++K++  + ++YV+  GK +  + + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYETRTGEFILESEELLKLREIITKVYVQRTGKPFWVISEDMERDVFMSATEA 184

Query: 196 CDWGVVDKVLMSR 208
             +G++D +L+ +
Sbjct: 185 QAYGLIDIILIQQ 197


>gi|167999544|ref|XP_001752477.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162696377|gb|EDQ82716.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 232

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 81/172 (47%), Positives = 120/172 (69%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+   +LK+RIVF+  Q++D +A  I +QLL L+A +P+++I L+IN PGG ++A M I+
Sbjct: 16  DVMGLMLKQRIVFLGNQMDDFVADSIISQLLLLDAIDPKQDIRLFINCPGGSISAAMGIF 75

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D MQ  K  IST C G AAS  +LLL+AG KG R A+PN+RI++HQP GG SGQA D+E 
Sbjct: 76  DAMQLCKCDISTICFGFAASTAALLLAAGTKGKRLAMPNSRIMMHQPMGGASGQAIDVEI 135

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            A++++  K  +  I  +  G++ E+VEK +DRD  MS  EA ++G++D V+
Sbjct: 136 QAKEVMYHKSNVIRILSEITGRSIEQVEKDIDRDRYMSPIEAMEYGMIDGVI 187


>gi|301353344|ref|YP_003795605.1| clp protease proteolytic subunit [Pteridium aquilinum subsp.
           aquilinum]
 gi|301016262|gb|ADK47549.1| clp protease proteolytic subunit [Pteridium aquilinum subsp.
           aquilinum]
          Length = 205

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 71/174 (40%), Positives = 114/174 (65%), Gaps = 1/174 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  Q++D +A  +   +++L  E+  K++ LY+NSPGG V AG++ Y
Sbjct: 22  DVYNRLYRERLLFLGQQVDDEIANQLIGIMMYLNGEDQAKDMYLYVNSPGGAVLAGISAY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           D MQF+ P + T CMG AASMGS +L+ GE   R ALP+AR+++HQP S  + GQA +  
Sbjct: 82  DAMQFVVPDVHTICMGLAASMGSSILAGGEITRRIALPHARVMIHQPASSYYDGQAGECV 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             A++  K++    ++Y +  GK    + + ++RD  +SA EA D+GV D V +
Sbjct: 142 MEAEEASKLRDCTTKVYAQRTGKPLWVISEDMERDVFLSAEEAQDYGVADPVAL 195


>gi|209550385|ref|YP_002282302.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209536141|gb|ACI56076.1| Endopeptidase Clp [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 194

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 75/175 (42%), Positives = 112/175 (64%), Gaps = 1/175 (0%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           + L K R +F+ G I   +A  +C+QL+ L A +  ++I +Y+NSPGG V +G +I+D +
Sbjct: 21  ANLFKSRSIFIYGPINQELAQKVCSQLVALAAAS-DEDIRIYVNSPGGHVESGDSIHDMI 79

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQ 156
           +FIKP +     G  AS G+L+  A  K  R  LPN R LLHQPSGG  G ASDIE  A+
Sbjct: 80  KFIKPKVWMIGTGWVASAGALIYVAAPKEQRLCLPNTRFLLHQPSGGTRGMASDIEIQAR 139

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           +I+K+  RLN+I     G+  +++ K  DRD+ +SA EA D+G+V +++ S+ DI
Sbjct: 140 EIIKMNERLNKIMAAATGQPLDKIAKDTDRDYWLSAEEAKDYGLVSRIVTSQADI 194


>gi|290489470|gb|ADD31119.1| clp protease proteolytic subunit protein [Oxalis latifolia]
          Length = 195

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 79/189 (41%), Positives = 121/189 (64%), Gaps = 4/189 (2%)

Query: 19  VPMVVEQT--NRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +T   R +   DIY+RL +ER++F+   ++  ++  + A +L+L  EN +K++ 
Sbjct: 5   VPKVPFRTPGYRRKSWIDIYNRLYRERVLFLGQGVDSTISNQLIALMLYLSHEN-EKDLY 63

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            +INSPGG V  G+AIYDTMQF++P I T CMG AASMGS LL  G    R A P+AR++
Sbjct: 64  FFINSPGGWVIPGIAIYDTMQFVRPDIQTICMGFAASMGSFLLVGGAITKRLAFPHARVM 123

Query: 137 LHQPSG-GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP+   F GQ +++   A++++K++  L  +Y +  GK    V + ++RD  MSA+EA
Sbjct: 124 IHQPAAIFFGGQVTEVILEAEELLKLREILTRVYAQRTGKPLWVVSEDMERDVFMSATEA 183

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 184 QAHGIVDLV 192


>gi|161784217|ref|YP_001595533.1| ATP-dependent protease proteolytic subunit [Lemna minor]
 gi|88696795|gb|ABD48520.1| ATP-dependent protease proteolytic subunit [Lemna minor]
          Length = 202

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 69/172 (40%), Positives = 113/172 (65%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  +++  ++  +   +++L  E+  K++ L+INSPGG V  G+AIY
Sbjct: 22  DVYNRLYRERLLFLGQEVDSEISNQLVGLMVYLSIEDDTKDLYLFINSPGGWVIPGIAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF+ P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F   QA +  
Sbjct: 82  DTMQFVPPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQAGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  L  +YV+  G     V + ++RD  MSA+EA  +G++D V
Sbjct: 142 LEAEELLKLRETLTRVYVQRTGNPLWVVSEDMERDVFMSATEAQAYGLIDLV 193


>gi|166235619|gb|ABY85531.1| ATP-dependent protease proteolytic subunit [Silene uniflora]
 gi|166235751|gb|ABY85657.1| ATP-dependent protease proteolytic subunit [Silene cryptoneura]
 gi|166235839|gb|ABY85741.1| ATP-dependent protease proteolytic subunit [Silene schafta]
 gi|166240002|gb|ABY86529.1| ATP-dependent protease proteolytic subunit [Heliosperma alpestre]
          Length = 196

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 70/172 (40%), Positives = 113/172 (65%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  +++  ++  +   +++L  E+  K++ L+INSPGG V  G+AIY
Sbjct: 22  DVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF++P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F   Q  +  
Sbjct: 82  DTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  L  +YV+  GK    V + ++RD  MSA+EA   G+VD V
Sbjct: 142 LEAEELLKLRETLTRVYVQRTGKPIWVVSEDMERDVFMSAAEAQAHGIVDLV 193


>gi|308807038|ref|XP_003080830.1| ribulose-bisphosphate carboxy (ISS) [Ostreococcus tauri]
 gi|116059291|emb|CAL54998.1| ribulose-bisphosphate carboxy (ISS) [Ostreococcus tauri]
          Length = 604

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 69/103 (66%), Positives = 85/103 (82%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMV+EQTNRGER +DIYSRLLKERIVF+ G I+D  ++L  AQLLFLE+ +P   I +
Sbjct: 412 LVPMVLEQTNRGERVFDIYSRLLKERIVFINGPIDDTASSLAVAQLLFLESASPTAPIWM 471

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           Y+NSPGG VTAG+ IYDTMQ++ PPI T C+GQA+SM SLLL+
Sbjct: 472 YVNSPGGSVTAGLGIYDTMQYVSPPIHTLCVGQASSMASLLLA 514


>gi|166235861|gb|ABY85762.1| ATP-dependent protease proteolytic subunit [Silene aegyptiaca]
 gi|166235883|gb|ABY85783.1| ATP-dependent protease proteolytic subunit [Silene atocioides]
          Length = 196

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 70/172 (40%), Positives = 113/172 (65%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  +++  ++  +   +++L  E+  K++ L+INSPGG V  G+AIY
Sbjct: 22  DVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF++P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F   Q  +  
Sbjct: 82  DTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  L  +YV+  GK    V + ++RD  MSA+EA   G+VD V
Sbjct: 142 LEAEELLKLRETLTRVYVQRTGKPIWVVSEDMERDVFMSAAEAQAHGIVDLV 193


>gi|283794992|ref|YP_003359383.1| ATP-dependent protease subunit [Olea europaea]
 gi|330850767|ref|YP_004376445.1| ATP-dependent Clp protease proteolytic subunit [Olea europaea
           subsp. europaea]
 gi|281428711|gb|ADA69950.1| ATP-dependent protease subunit [Olea europaea]
 gi|291059277|gb|ADD72113.1| clp protease proteolytic subunit [Olea europaea]
 gi|328795457|emb|CBR30339.1| ATP-dependent Clp protease proteolytic subunit [Olea europaea
           subsp. europaea]
          Length = 196

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 68/172 (39%), Positives = 113/172 (65%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  +++  ++  +   +++L  E+  K++ L+INSPGG V  G+A+Y
Sbjct: 22  DVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAVY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF++P + T CMG AASM S +L  GE   R A P+AR+++HQP+  F   Q  +  
Sbjct: 82  DTMQFVRPDVHTICMGLAASMASFILVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  L  +YV+  GK    V + ++RD  MSA+EA  +G+VD V
Sbjct: 142 LEAEELLKLRETLTRVYVQRTGKPLWVVSEDMERDVFMSATEAQAYGIVDLV 193


>gi|297748561|gb|ADI51107.1| hypothetical protein CTDEC_0431 [Chlamydia trachomatis D-EC]
 gi|297749441|gb|ADI52119.1| hypothetical protein CTDLC_0431 [Chlamydia trachomatis D-LC]
          Length = 196

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 77/179 (43%), Positives = 117/179 (65%), Gaps = 2/179 (1%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I  +LL  R +F +  + +  AT    +L +LE  NP + I   INSPGG V AG A++D
Sbjct: 18  IDRKLLDSRRIFFSEPVTEKSATEAIKKLWYLELTNPGQPIVFVINSPGGSVDAGFAVWD 77

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS--GGFSGQASDIE 152
            ++ I  P++T   G AASMGS+L      G RFA P+ARI++HQPS  G  +GQA+D++
Sbjct: 78  QIKMISSPLTTVVTGLAASMGSVLSLCAVPGRRFATPHARIMIHQPSIGGTITGQATDLD 137

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
            HA++I+K K R+ ++YV+  G++ E +EK +DRD  MSA+EA ++G++D +L S  D+
Sbjct: 138 IHAREILKTKARIIDVYVEATGQSREVIEKAIDRDMWMSANEAMEFGLLDGILFSFNDL 196


>gi|15605158|ref|NP_219943.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis D/UW-3/CX]
 gi|76789165|ref|YP_328251.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis A/HAR-13]
 gi|237802858|ref|YP_002888052.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis B/Jali20/OT]
 gi|237804780|ref|YP_002888934.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis B/TZ1A828/OT]
 gi|255311239|ref|ZP_05353809.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis 6276]
 gi|255317541|ref|ZP_05358787.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis 6276s]
 gi|255348798|ref|ZP_05380805.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis 70]
 gi|255503338|ref|ZP_05381728.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis 70s]
 gi|6840804|sp|P38002|CLPP1_CHLTR RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|92087002|sp|Q3KLR9|CLPP1_CHLTA RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|3328861|gb|AAC68028.1| CLP Protease [Chlamydia trachomatis D/UW-3/CX]
 gi|76167695|gb|AAX50703.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis A/HAR-13]
 gi|231273080|emb|CAX09993.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis B/TZ1A828/OT]
 gi|231274092|emb|CAX10886.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis B/Jali20/OT]
 gi|296435954|gb|ADH18128.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis G/9768]
 gi|296436881|gb|ADH19051.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis G/11222]
 gi|296437815|gb|ADH19976.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis G/11074]
 gi|297140315|gb|ADH97073.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis G/9301]
          Length = 192

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 77/179 (43%), Positives = 117/179 (65%), Gaps = 2/179 (1%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I  +LL  R +F +  + +  AT    +L +LE  NP + I   INSPGG V AG A++D
Sbjct: 14  IDRKLLDSRRIFFSEPVTEKSATEAIKKLWYLELTNPGQPIVFVINSPGGSVDAGFAVWD 73

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS--GGFSGQASDIE 152
            ++ I  P++T   G AASMGS+L      G RFA P+ARI++HQPS  G  +GQA+D++
Sbjct: 74  QIKMISSPLTTVVTGLAASMGSVLSLCAVPGRRFATPHARIMIHQPSIGGTITGQATDLD 133

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
            HA++I+K K R+ ++YV+  G++ E +EK +DRD  MSA+EA ++G++D +L S  D+
Sbjct: 134 IHAREILKTKARIIDVYVEATGQSREVIEKAIDRDMWMSANEAMEFGLLDGILFSFNDL 192


>gi|330850654|ref|YP_004376535.1| clp protease proteolytic subunit [Ptilidium pulcherrimum]
 gi|302024783|gb|ADK89629.1| clp protease proteolytic subunit [Ptilidium pulcherrimum]
          Length = 212

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 73/180 (40%), Positives = 118/180 (65%), Gaps = 9/180 (5%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  Q++D +A  +   +++L  E+  K++ LYINSPGG V AG+++Y
Sbjct: 22  DVYNRLYRERLLFLGQQVDDEIANQLIGIMMYLNGEDESKDMYLYINSPGGAVLAGISVY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA--------RILLHQP-SGGF 144
           D MQF+ P + T CMG AASMGS +L+ GE   R ALP+A        R+++HQP S  +
Sbjct: 82  DAMQFVVPDVHTICMGLAASMGSFILTGGEITKRIALPHAFRILLFVNRVMIHQPASSYY 141

Query: 145 SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            GQA +    A++++K++  + ++YV+  GK    + + ++RD  MSA EA  +G+VD V
Sbjct: 142 DGQAGECIMEAEEVLKLRDCITKVYVQRTGKPLWVISEDMERDVFMSAKEAKVYGIVDLV 201


>gi|157413875|ref|YP_001484741.1| ATP-dependent Clp protease-like protein [Prochlorococcus marinus
           str. MIT 9215]
 gi|254526964|ref|ZP_05139016.1| Clp protease [Prochlorococcus marinus str. MIT 9202]
 gi|157388450|gb|ABV51155.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9215]
 gi|221538388|gb|EEE40841.1| Clp protease [Prochlorococcus marinus str. MIT 9202]
          Length = 220

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 82/193 (42%), Positives = 118/193 (61%), Gaps = 19/193 (9%)

Query: 41  KERIVFV----------TGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG------- 83
           KERIV++            Q+   +  LI AQLL+LE E+P+K I  YINS G       
Sbjct: 27  KERIVYLGLPLFSDDDAKRQLGMDVTELIIAQLLYLEFEDPEKPIYFYINSTGTSWYTGD 86

Query: 84  --GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
             G  T   AI DT+ +IKPP+ T C+GQA    +++LS+G KG R ALP+A I+LHQP 
Sbjct: 87  AVGFETEAFAICDTISYIKPPVHTICIGQAMGTAAVILSSGTKGQRAALPHASIVLHQPI 146

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            G  GQA+DI+  A++++K K+ + EI  +N GKT +E+ K  DR   ++  EA D+GV+
Sbjct: 147 SGARGQATDIQIRAEEVLKNKKSMLEILSRNTGKTIDELSKDSDRMSYLNPQEALDYGVI 206

Query: 202 DKVLMSRIDIEEK 214
           D++L S+ D+  K
Sbjct: 207 DRILTSQKDLPNK 219


>gi|116253257|ref|YP_769095.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|116243122|sp|Q1MDH4|CLPP3_RHIL3 RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
           AltName: Full=Endopeptidase Clp 3
 gi|115257905|emb|CAK09003.1| putative ATP-dependent Clp protease [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 194

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 75/175 (42%), Positives = 112/175 (64%), Gaps = 1/175 (0%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           + L K R +F+ G I   +A  +C+QL+ L A +  ++I +Y+NSPGG V +G +I+D +
Sbjct: 21  ANLFKSRSIFIYGPINQELAQKVCSQLVALAAAS-DEDIRIYVNSPGGHVESGDSIHDMI 79

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQ 156
           +FIKP +     G  AS G+L+  A  K  R  LPN R LLHQPSGG  G ASDIE  A+
Sbjct: 80  KFIKPKVWMIGTGWVASAGALIYVATPKERRLCLPNTRFLLHQPSGGTRGMASDIEIQAR 139

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           +I+K+  RLN I     G+  ++++K  DRD+ +SA EA D+G+V +++ S+ DI
Sbjct: 140 EIIKMNERLNRIMAAATGQPLDKIDKDTDRDYWLSAEEAKDYGLVSRIVTSQADI 194


>gi|298252719|ref|ZP_06976513.1| ATP-dependent Clp protease, protease subunit [Gardnerella vaginalis
           5-1]
 gi|297533083|gb|EFH71967.1| ATP-dependent Clp protease, protease subunit [Gardnerella vaginalis
           5-1]
          Length = 224

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 83/192 (43%), Positives = 132/192 (68%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   EQT  G ++ D Y++L ++RI+F+  Q++D  A  I AQLL LE+ +  +++ +
Sbjct: 32  VLPQFGEQTPYGMKTQDPYTKLFEDRIIFMGVQVDDTSADDIMAQLLVLESMDSDRDVMM 91

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQ+I P + T C+GQAAS  +++L+AG  G R  LPNAR+L+
Sbjct: 92  YINSPGGSMTAMTAIYDTMQYINPDVQTVCLGQAASAAAIILAAGAAGKRMILPNARVLI 151

Query: 138 HQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+ G   G+A++IE  A+++++++  L     K+ G+  E + K ++ D I++ASEA 
Sbjct: 152 HQPAMGQDFGKATEIELQAKEMLRLRSWLESTLAKHTGQDIERIRKDIEVDTILTASEAK 211

Query: 197 DWGVVDKVLMSR 208
            +G+VD+VL  R
Sbjct: 212 AYGMVDEVLERR 223


>gi|218516591|ref|ZP_03513431.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli
           8C-3]
 gi|327193487|gb|EGE60382.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli
           CNPAF512]
          Length = 194

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 75/175 (42%), Positives = 111/175 (63%), Gaps = 1/175 (0%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           + L K R +F+ G I   +A  +C+QL+ L A +   +I +Y+NSPGG V +G +I+D +
Sbjct: 21  ANLFKSRSIFIYGPINQELAQKVCSQLVALAAAS-DDDIRIYVNSPGGHVESGDSIHDMV 79

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQ 156
           +FIKP +     G  AS G+L+  A  K  R  LPN R LLHQPSGG  G ASDIE  A+
Sbjct: 80  KFIKPKVWMIGTGWVASAGALIYVAAPKEQRLCLPNTRFLLHQPSGGTRGMASDIEIQAR 139

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           +I+K+  RLN+I     G+  +++ K  DRD+ +SA EA D+G+V +++ S+ DI
Sbjct: 140 EIIKMNERLNKIMAAATGQPLDKIAKDTDRDYWLSAEEAKDYGLVSRIVTSQADI 194


>gi|218672848|ref|ZP_03522517.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli
           GR56]
          Length = 194

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 75/175 (42%), Positives = 112/175 (64%), Gaps = 1/175 (0%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           + L K R +F+ G I   +A  +C+QL+ L A +  ++I +Y+NSPGG V +G +I+D +
Sbjct: 21  ANLFKSRSIFIYGPINQELAQKVCSQLVALAAAS-DEDIRIYVNSPGGHVESGDSIHDMV 79

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQ 156
           +FIKP +     G  AS G+L+  A  K  R  LPN R LLHQPSGG  G ASDIE  A+
Sbjct: 80  KFIKPKVWMIGTGWVASAGALIYVAAPKERRICLPNTRFLLHQPSGGTRGMASDIEIQAR 139

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           +I+K+  RLN+I     G+  +++ K  DRD+ +SA EA D+G+V +++ S+ DI
Sbjct: 140 EIIKMNERLNKIMAAATGQPLDKIAKDTDRDYWLSAEEAKDYGLVSRIVTSQADI 194


>gi|166235729|gb|ABY85636.1| ATP-dependent protease proteolytic subunit [Silene latifolia]
          Length = 196

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 71/172 (41%), Positives = 112/172 (65%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           DIY+RL +ER++F+  +++  ++  +   +++L  E+  K++ L+INSPGG V +G+AIY
Sbjct: 22  DIYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVISGVAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF++P + T CMG AASMGS +L  GE   R A P+AR+++HQP   F   Q  +  
Sbjct: 82  DTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPVSSFYEAQTGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  L  +YV+  GK    V + ++RD  MSA EA   G+VD V
Sbjct: 142 LEAEELLKLRETLTRVYVQRTGKPIWVVSEDMERDVFMSAEEAQAHGIVDLV 193


>gi|290489454|gb|ADD31111.1| clp protease proteolytic subunit protein [Berberidopsis corallina]
          Length = 196

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 68/172 (39%), Positives = 113/172 (65%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  +++  ++  +   +++L  E+  K + L+INSPGG V  G+AIY
Sbjct: 22  DVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKNLYLFINSPGGWVIPGVAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF++P + T CMG AASMGS +L+ GE   R A P+AR+++HQP+  F   Q  +  
Sbjct: 82  DTMQFVRPNVHTICMGLAASMGSFILAGGEITKRLAFPHARVMIHQPASSFYEAQTGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A+++++++  L  +Y +  GK+   V + ++RD  MSA+EA   G+VD V
Sbjct: 142 LEAEELLRLRESLTRVYAQRTGKSLWVVSEDMERDVFMSATEAQTHGIVDLV 193


>gi|290489466|gb|ADD31117.1| clp protease proteolytic subunit protein [Heuchera sanguinea]
          Length = 196

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 69/172 (40%), Positives = 113/172 (65%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  +++  ++  +   +++L  E+  K++ L+INSPGG V  G+AIY
Sbjct: 22  DVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF++P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F   Q  +  
Sbjct: 82  DTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  +  +YV+  GK    V + ++RD  MSA+EA   G+VD V
Sbjct: 142 LEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLV 193


>gi|158187126|gb|ABW22759.1| clp protease proteolytic subunit [Phaseolus vulgaris]
          Length = 196

 Score =  152 bits (385), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 73/189 (38%), Positives = 121/189 (64%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQT--NRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +T  +R     DIY+RL +ER++F+   ++  ++  + + +++L  E   K++ 
Sbjct: 5   VPRVPFRTPGDRDASWVDIYNRLYRERLLFLGQDVDSEISNQLISLMIYLSIEKENKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+A+YDTMQF++P + T C+G AASMGS LL+ G    R A P+AR++
Sbjct: 65  LFINSPGGWVIPGIALYDTMQFVQPDVQTVCLGLAASMGSFLLAGGTITKRLAFPHARVM 124

Query: 137 LHQPSGGF-SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP+  F   QA +    A++++K++  +  +YV+  GK+   + + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQAGEFILEAEELLKMRETITRVYVQRTGKSLWVISEDMERDVFMSAAEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGIVDLV 193


>gi|116073335|ref|ZP_01470597.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           RS9916]
 gi|116068640|gb|EAU74392.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           RS9916]
          Length = 221

 Score =  152 bits (384), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 81/201 (40%), Positives = 123/201 (61%), Gaps = 19/201 (9%)

Query: 34  DIYSRLLKERIVFV----------TGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           D+ S +LKERIV++            Q+   +  LI AQLL+LE +NP+K I  YINS G
Sbjct: 20  DLPSLMLKERIVYLGLPLFSDDDTKRQLGLDVTELIIAQLLYLEFDNPEKPIYFYINSTG 79

Query: 84  ---------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
                    G  T   AI DT+ +IKPP+ T C+GQA    +++LSAG KG R ALP++ 
Sbjct: 80  TSWHTGDAIGFETEAFAICDTISYIKPPVHTICIGQAMGTAAVILSAGTKGQRAALPHSS 139

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I+LHQP  G  GQA+DI+  A+++++ KR + EI   N G+T E++ +  DR   ++  +
Sbjct: 140 IVLHQPRSGARGQATDIQIRAKEVLQNKRSMLEILSANTGRTVEQLSQDSDRMSYLNPQQ 199

Query: 195 ACDWGVVDKVLMSRIDIEEKS 215
           A ++G++D+VL SR D+  ++
Sbjct: 200 AVEYGLIDRVLSSRKDLPSQA 220


>gi|78103274|ref|YP_358605.1| ATP-dependent Clp protease proteolytic subunit [Phalaenopsis
           aphrodite subsp. formosana]
 gi|122213418|sp|Q3BAL3|CLPP_PHAAO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|58802804|gb|AAW82524.1| ATP-dependent Clp protease proteolytic subunit [Phalaenopsis
           aphrodite subsp. formosana]
          Length = 204

 Score =  152 bits (384), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 70/172 (40%), Positives = 113/172 (65%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  +++  ++  I   +++L  E+  +++ L+INSPGG V  G+AIY
Sbjct: 22  DVYNRLHRERLLFLGQEVDSEISNQIVGLMVYLSIEDDTRDLYLFINSPGGWVIPGIAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF+ P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F   QA D  
Sbjct: 82  DTMQFVLPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQARDFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  L ++YV+  G     + + ++RD  MSA+EA   G+VD V
Sbjct: 142 LEAEELLKLRETLTKVYVQRTGNPLWVISEDMERDVFMSATEAQAHGIVDLV 193


>gi|218679329|ref|ZP_03527226.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli CIAT
           894]
          Length = 176

 Score =  152 bits (384), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 75/175 (42%), Positives = 110/175 (62%), Gaps = 1/175 (0%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           + L K R +F+ G I   +A  +C+QL+ L A +   +I +Y+NSPGG V +G +I+D +
Sbjct: 3   ANLFKSRSIFIYGPINQELAQKVCSQLVALAAAS-DDDIRIYVNSPGGHVESGDSIHDMI 61

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQ 156
           +FIKP +     G  AS G+L+  A  K  R  LPN R LLHQPSGG  G ASDIE  A+
Sbjct: 62  KFIKPKVWMIGTGWVASAGALIYVAAPKEQRLCLPNTRFLLHQPSGGTRGMASDIEIQAR 121

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           +I+K+  RLN+I     G+  +++ K  DRD+ +SA EA D+G+V +++ S  DI
Sbjct: 122 EIIKMNERLNKIMAAATGQPLDKIAKDTDRDYWLSAEEAKDYGLVSRIVTSHADI 176


>gi|307331320|ref|ZP_07610442.1| Endopeptidase Clp [Streptomyces violaceusniger Tu 4113]
 gi|306883061|gb|EFN14125.1| Endopeptidase Clp [Streptomyces violaceusniger Tu 4113]
          Length = 211

 Score =  152 bits (384), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 85/195 (43%), Positives = 122/195 (62%), Gaps = 6/195 (3%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T+ G  + D YS+LL ERIVF+   I+D  A  + AQL+ LE   P ++ISL
Sbjct: 9   VLPEFTERTSSGTHTMDPYSKLLSERIVFLGTPIDDTAANDVIAQLIHLEHAAPGQDISL 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG   A  A+YDT+ FI   + T C+GQAAS  ++LL+AG  G R ALP ARIL+
Sbjct: 69  YINSPGGSFGAMTAVYDTLHFISCDVETICLGQAASAAAVLLAAGTPGKRLALPGARILI 128

Query: 138 HQPSGGFS----GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           HQ   GF+    G  SD+E  A ++ + +  L ++ V++ G++ E +   +DRD I  A 
Sbjct: 129 HQ--AGFAEPVEGTTSDLEIQANELRRTQETLEQMLVRHTGRSAERIRADIDRDKIFDAE 186

Query: 194 EACDWGVVDKVLMSR 208
            A  +G+VD+V  SR
Sbjct: 187 SAVAYGLVDQVTQSR 201


>gi|197294136|ref|YP_002149757.1| clp protease proteolytic subunit [Cicer arietinum]
 gi|197089824|gb|ACH41094.1| clp protease proteolytic subunit [Cicer arietinum]
          Length = 197

 Score =  152 bits (384), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 69/172 (40%), Positives = 114/172 (66%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  ++   ++  +   +++L  E+  K++ L+INSPGG V +GMAI+
Sbjct: 22  DLYNRLFQERLLFLGQEVNSEISNQLVGLMVYLSLEDKNKDLYLFINSPGGEVISGMAIF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF++  + T C+G AASMGSL+L  GE   R A P+AR+++HQP+  F  GQ  +  
Sbjct: 82  DTMQFVEAEVQTVCVGLAASMGSLILVGGEITKRLAFPHARVMIHQPATSFYEGQTVECM 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A ++++++R +  IY +  GK   ++ K ++RD  MSA EA  +G+VD V
Sbjct: 142 LEANELLQMRRNITNIYAQRTGKPSWQISKDMERDLFMSAEEAQAYGLVDMV 193


>gi|114799921|ref|YP_759272.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP
           [Hyphomonas neptunium ATCC 15444]
 gi|114740095|gb|ABI78220.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP
           [Hyphomonas neptunium ATCC 15444]
          Length = 200

 Score =  152 bits (384), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 72/177 (40%), Positives = 116/177 (65%), Gaps = 1/177 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           + S L K R + +TG I+   A ++C +LL L AE+ +  I + ++SPGG V +G  I+D
Sbjct: 24  VESALFKSRTILLTGGIDFKQARMVCERLLALSAESDEP-ILMILSSPGGHVESGDMIHD 82

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            ++F+  P+     G  AS G+L+ +A +K  R++LPN R LLH+P GG  GQA+D+E  
Sbjct: 83  MIKFVTAPVKVLGSGWVASAGALIYAAAQKENRYSLPNTRYLLHEPRGGVGGQATDVEIQ 142

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           A++I+K++ RLN I+ +  GKT E+++K  +RD  M A EA D+G+V K++ +R +I
Sbjct: 143 AREIIKMRERLNRIFAEATGKTVEQIKKDTERDFWMGAQEAVDYGLVSKIIRNRREI 199


>gi|11466349|ref|NP_038352.1| ATP-dependent Clp protease proteolytic subunit [Mesostigma viride]
 gi|12229759|sp|Q9MUV8|CLPP_MESVI RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|7259492|gb|AAF43793.1|AF166114_5 proteolytic subunit 2 of clp protease [Mesostigma viride]
          Length = 229

 Score =  152 bits (384), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 65/183 (35%), Positives = 118/183 (64%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ERI+F+   ++D +A  +   ++FL +E+  K I  YINSPGG + AG+ +Y
Sbjct: 22  DVYNRLYRERILFLGEDLDDEVANQLIGVMVFLNSEDDTKGIFFYINSPGGSMNAGLGVY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D +Q +   ++T CMG AASM S +L+ G  G R   P+AR++LHQP GG  G+A  +  
Sbjct: 82  DMIQHVNVDVTTICMGLAASMASFILAGGTPGQRLMFPHARVMLHQPMGGNGGKAKYMVE 141

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
            + ++ +++  +  +YVK  G++ E++ K ++RD+ M   +A ++G++D ++ +  +++E
Sbjct: 142 ESVEVKRLRELIAHLYVKRTGQSLEKIRKDMNRDNFMRPRQAKEYGLIDHMVTNVNELDE 201

Query: 214 KSK 216
             K
Sbjct: 202 LDK 204


>gi|302824555|ref|XP_002993920.1| hypothetical protein SELMODRAFT_137715 [Selaginella moellendorffii]
 gi|300138287|gb|EFJ05061.1| hypothetical protein SELMODRAFT_137715 [Selaginella moellendorffii]
          Length = 224

 Score =  152 bits (383), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 73/171 (42%), Positives = 113/171 (66%), Gaps = 1/171 (0%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           +RL +ER++F+   ++D +A  I   +++L  EN  K+I LYINSPGG V AG+++YD M
Sbjct: 43  NRLYRERLLFLGQNMDDEIANQIICIMMYLNGENRSKDIYLYINSPGGAVLAGISVYDMM 102

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIERHA 155
           QF+ P + T C+G AASMGS +L+ G    R ALP+AR+++HQP+  F  GQA +    A
Sbjct: 103 QFVVPDVHTICVGLAASMGSFILTGGGITKRIALPHARVMIHQPASSFYEGQAGECLMEA 162

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           ++I+K++  +  IY +  GK    V + ++RD  MSA EA  +G++D V+M
Sbjct: 163 EEILKLRDCITSIYARKTGKPLWVVSEDMERDVFMSAREARVYGIIDLVVM 213


>gi|290489476|gb|ADD31122.1| clp protease proteolytic subunit protein [Staphylea colchica]
          Length = 196

 Score =  152 bits (383), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 72/172 (41%), Positives = 113/172 (65%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           DIY+RL +ER++F+   ++  ++  + A +++L  E+  K++ L+INSPGG V  G+AIY
Sbjct: 22  DIYNRLYRERLLFLGQMVDTVISNHLIALMVYLTLESDTKDLYLFINSPGGWVMPGIAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG-QASDIE 152
           DTMQF++P + T CMG AASMGS LL  G+   R A P+AR+++HQP+  F G Q  +  
Sbjct: 82  DTMQFVRPDVQTICMGFAASMGSFLLVGGKITKRIAFPHARVMIHQPAAAFYGAQTGEFV 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  +  IY +  GK    V + ++RD  MSA+EA   G+VD V
Sbjct: 142 LEAEELLKLREIMTSIYAQRTGKPLWVVSEDMERDTFMSATEAQAHGLVDLV 193


>gi|91984016|ref|YP_567102.1| ATP-dependent Clp protease proteolytic subunit [Vitis vinifera]
 gi|122230336|sp|Q0ZIZ4|CLPP_VITVI RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|91701674|gb|ABE47558.1| clp protease proteolytic subunit [Vitis vinifera]
          Length = 196

 Score =  152 bits (383), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 69/172 (40%), Positives = 112/172 (65%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  ++E  ++  +   +++L  E+  K++  +INSPGG V  G+AIY
Sbjct: 22  DVYNRLYRERLLFLGQEVESEISNQLIGLMIYLSIEDENKDLYFFINSPGGWVLPGIAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF+ P + T C+G AASMGS +L  G    R A P+AR+++HQP+  F   QA +  
Sbjct: 82  DTMQFVPPEVHTICLGLAASMGSFILVGGTITKRLAFPHARVMIHQPAAAFYEAQAGEFV 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  + ++YV+  GK    V + L+RD  MSA+EA   G+VD V
Sbjct: 142 MEAEELLKLREIITKVYVQRTGKPLWVVSEDLERDVFMSATEAQTHGIVDLV 193


>gi|139387277|ref|YP_001123398.1| ATP-dependent Clp protease proteolytic subunit [Capsella
           bursa-pastoris]
 gi|139390177|ref|YP_001123750.1| ATP-dependent Clp protease proteolytic subunit [Lobularia maritima]
 gi|160380546|sp|A4QKL7|CLPP_CAPBU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|160380557|sp|A4QLL9|CLPP_LOBMA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|134286598|dbj|BAF50222.1| ATP-dependent protease subunit [Capsella bursa-pastoris]
 gi|134286954|dbj|BAF50574.1| ATP-dependent protease subunit [Lobularia maritima]
          Length = 196

 Score =  152 bits (383), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 71/178 (39%), Positives = 116/178 (65%), Gaps = 2/178 (1%)

Query: 29  GERSY-DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVT 87
           G+ S+ DIY+RL +ER+ F+  +++  ++  + + +++L  E   K++ L+INSPGG V 
Sbjct: 16  GDTSWVDIYNRLYRERLFFLGQEVDTEISNQLISLMIYLSIEKDTKDLYLFINSPGGWVI 75

Query: 88  AGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SG 146
           +GMAIYDTMQF++P + T CMG AAS+ S +L  GE   R A P+AR+++HQP+  F   
Sbjct: 76  SGMAIYDTMQFVRPDVQTICMGLAASIASFILVGGEITKRIAFPHARVMIHQPASSFYEA 135

Query: 147 QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           Q  +    A++++K++  +  +YV+  GK    V + ++RD  MSA+EA   G+VD V
Sbjct: 136 QTGEFILEAEELLKLRETITRVYVQRTGKPIWVVSEDMERDVFMSATEAQAHGIVDLV 193


>gi|113954996|ref|YP_729944.1| ATP-dependent Clp protease-like protein [Synechococcus sp. CC9311]
 gi|113882347|gb|ABI47305.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. CC9311]
          Length = 225

 Score =  152 bits (383), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 85/197 (43%), Positives = 117/197 (59%), Gaps = 19/197 (9%)

Query: 34  DIYSRLLKERIV------FVTGQIEDHMAT----LICAQLLFLEAENPQKEISLYINSPG 83
           D+ S +LKERIV      F  G  +  M      LI AQLLFLE +NP K I  YINS G
Sbjct: 24  DLPSLMLKERIVYLGLPLFSDGDAKRQMGLDVTELIIAQLLFLEFDNPDKPIYFYINSTG 83

Query: 84  ---------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
                    G  T   AI DT++++KPP+ T C+GQA    +++LSAG KG R ALP+A 
Sbjct: 84  TSWYSGESIGFETEAFAICDTLRYVKPPVHTICIGQAMGTAAVILSAGTKGQRAALPHAS 143

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I+LHQP  G  GQA+DI+  A++++  KR + EI   N G++ EE+    DR   ++  E
Sbjct: 144 IVLHQPRSGARGQATDIQIRAKEVLHNKRAMLEILSTNTGRSVEELSADSDRMSYLTPQE 203

Query: 195 ACDWGVVDKVLMSRIDI 211
           A  +G++D+VL SR D+
Sbjct: 204 AVTYGLIDRVLDSRKDL 220


>gi|156085810|ref|XP_001610314.1| ATP-dependent Clp protease proteolytic subunit [Babesia bovis T2Bo]
 gi|154797567|gb|EDO06746.1| ATP-dependent Clp protease proteolytic subunit, putative [Babesia
           bovis]
          Length = 245

 Score =  151 bits (382), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 74/207 (35%), Positives = 134/207 (64%), Gaps = 4/207 (1%)

Query: 3   FEGCAKKDSEDVFLGL--VPMVVEQTNRGERS--YDIYSRLLKERIVFVTGQIEDHMATL 58
           ++ C+   ++ +F+    VP+V  +    +RS  +DI++RL +ERI+FV+  +++    +
Sbjct: 33  YKPCSNYLTDKLFMTPLGVPLVEYKIPGTQRSEFHDIHTRLYRERILFVSQSLDESYTNM 92

Query: 59  ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLL 118
           I   LL L++++ +K I+LYINS GG  TAG+ +YDT++ +K  I+T  +G  ++  SLL
Sbjct: 93  IIGTLLCLDSDSNEKPITLYINSQGGPSTAGITLYDTIKHLKSKIATINVGFCSATASLL 152

Query: 119 LSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYE 178
           L++G  GMR ALP++R+++HQP+G   G A  I   AQ ++ +KR L ++Y +   +  +
Sbjct: 153 LASGTPGMRSALPHSRVVMHQPAGTLEGSAEQIRSQAQYMLNMKRILQKLYSQVTNQPLD 212

Query: 179 EVEKTLDRDHIMSASEACDWGVVDKVL 205
            + K L+R+  MSA E+  +G+VD+++
Sbjct: 213 NIAKDLEREQFMSAEESLQYGLVDRII 239


>gi|126348492|emb|CAJ90215.1| putative ATP-dependent Clp protease [Streptomyces ambofaciens ATCC
           23877]
          Length = 211

 Score =  151 bits (382), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 75/191 (39%), Positives = 118/191 (61%), Gaps = 2/191 (1%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P   E+ +  +R  D Y++LL+ERIV +   I++  A  + A+LL+LE   P + I+LY+
Sbjct: 11  PEFTERASADDRVVDPYAKLLEERIVLLGTPIDEASANDVTARLLYLEHTAPDRAIALYV 70

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG  TA  AIYDTM+ +   + T C+GQA +  ++LL+AG  G R  LP AR++L Q
Sbjct: 71  NSPGGSFTAMTAIYDTMRHVSCDVETTCLGQAGTAAAVLLAAGTPGRRAVLPGARVMLRQ 130

Query: 140 PS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           PS      G+  D+   A +  +I+ RL E+ V++ G+T E+V   ++R+ I+ A +A D
Sbjct: 131 PSLIETVEGRTDDLAVRADESTRIRTRLEELLVRHTGRTPEQVTADIERETILDARQALD 190

Query: 198 WGVVDKVLMSR 208
            G+VD ++  R
Sbjct: 191 HGLVDHIVPGR 201


>gi|290489436|gb|ADD31102.1| clp protease proteolytic subunit protein [Dillenia indica]
          Length = 196

 Score =  151 bits (382), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 67/172 (38%), Positives = 114/172 (66%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  ++++ ++  +   +++L  E+  K++ L+INSPGG V  G+AIY
Sbjct: 22  DVYNRLYRERLLFLGQEVDNEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DT+QF++P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F   Q  +  
Sbjct: 82  DTIQFVQPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  +  +YV+  GK    V + ++RD  MSA EA  +G++D V
Sbjct: 142 LEAEELLKLRETITRVYVQRTGKPLWLVSEDMERDVFMSAREAQAYGIIDLV 193


>gi|292559570|ref|YP_003540956.1| clpP-like protease [Phoenix dactylifera]
 gi|290790978|gb|ADD63233.1| clpP-like protease [Phoenix dactylifera]
 gi|294620602|gb|ADF28171.1| clpP-like protease [Phoenix dactylifera]
          Length = 204

 Score =  151 bits (382), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 69/172 (40%), Positives = 113/172 (65%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  +++  ++  +   +++L  E+  +++ L+INSPGG V  G+AIY
Sbjct: 22  DVYNRLYRERLLFLGQEVDSEISNQLVGLMVYLSIEDDTRDLYLFINSPGGWVIPGIAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF+ P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F   QA +  
Sbjct: 82  DTMQFVPPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQAGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  L ++YV+  G     V + ++RD  MSA+EA   G+VD V
Sbjct: 142 LEAEELLKLRETLTKVYVQRTGNPLWVVSEDMERDVFMSATEAQVHGIVDLV 193


>gi|329942546|ref|ZP_08291356.1| clp protease family protein [Chlamydophila psittaci Cal10]
 gi|313847774|emb|CBY16764.1| putative protease proteolytic subunit [Chlamydophila psittaci RD1]
 gi|325507036|gb|ADZ18674.1| ATP-dependent Clp protease proteolytic subunit [Chlamydophila
           psittaci 6BC]
 gi|328815456|gb|EGF85444.1| clp protease family protein [Chlamydophila psittaci Cal10]
 gi|328914424|gb|AEB55257.1| Clp protease [Chlamydophila psittaci 6BC]
          Length = 192

 Score =  151 bits (382), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 74/179 (41%), Positives = 116/179 (64%), Gaps = 2/179 (1%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I  ++L  R VF +  + D  A     +L +LE  NP + I   INSPGG V AG A++D
Sbjct: 14  IERKILDARRVFFSEPVTDKSAAEAIKKLWYLELTNPGQPIVFVINSPGGSVDAGFAVWD 73

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS--GGFSGQASDIE 152
            ++ +  P++T   G AASMGS+L      G RFA P++RI++HQPS  G  +GQA+D++
Sbjct: 74  QIKMMTSPVTTVVTGLAASMGSVLSLCAAPGRRFATPHSRIMIHQPSIGGPITGQATDLD 133

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
            HA++I+K K+R+ ++Y++  G++ E +EK +DRD  M+A EA D+G++D +L S  D+
Sbjct: 134 IHAREILKTKKRIVDVYLEATGQSREVIEKAIDRDTWMTADEAKDFGLLDGILFSFNDL 192


>gi|94502250|ref|ZP_01308735.1| ATP-dependent Clp protease proteolytic subunit 2 [Candidatus Sulcia
           muelleri str. Hc (Homalodisca coagulata)]
 gi|94451188|gb|EAT14128.1| ATP-dependent Clp protease proteolytic subunit 2 [Candidatus Sulcia
           muelleri str. Hc (Homalodisca coagulata)]
          Length = 189

 Score =  151 bits (382), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 71/151 (47%), Positives = 106/151 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           + P ++E+        D++SRL+ +RI+F+   I+D +A +I AQLLFL++ +  K I +
Sbjct: 31  MTPYIMEERKYNVSQMDVFSRLMMDRIIFLGTPIDDQIANIIQAQLLFLQSLDSNKGIQI 90

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V +G+ IYDTMQ +KP IST C G AASM ++LL +G+KG R  L ++R+L+
Sbjct: 91  YINSPGGSVYSGLGIYDTMQILKPEISTICTGIAASMAAILLCSGKKGKRSILKHSRVLI 150

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           HQP G   GQ+SD+E   ++I+K+K  LN+I
Sbjct: 151 HQPIGYAKGQSSDMEITVREILKLKEELNKI 181


>gi|327328169|gb|EGE69938.1| Clp protease [Propionibacterium acnes HL103PA1]
          Length = 244

 Score =  151 bits (382), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 79/191 (41%), Positives = 128/191 (67%), Gaps = 2/191 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P   E+T+ G R  D Y++L ++RI+F+   + D +A  + AQLL L++ +  ++IS+Y
Sbjct: 53  IPQWEERTSYGVRRVDPYTKLFEDRIIFLGTPVTDDIANAVMAQLLCLQSMDADRQISMY 112

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TA  AIYDTM +++P I T C+G AAS  ++LL+AG KG R +LPN+ +L+H
Sbjct: 113 INSPGGSFTAMTAIYDTMNYVRPDIQTICLGMAASAAAVLLAAGAKGQRLSLPNSTVLIH 172

Query: 139 QPSGGFS--GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           QP+ G +  GQA+DIE    +I +I++ +  +     G+T E++ K +DRD  ++A  A 
Sbjct: 173 QPAMGQATYGQATDIEILDDEIQRIRKLMENMLATATGQTVEQISKDIDRDKYLTAQGAK 232

Query: 197 DWGVVDKVLMS 207
           ++G++D +L S
Sbjct: 233 EYGLIDDILTS 243


>gi|62184864|ref|YP_219649.1| ATP-dependent Clp protease proteolytic subunit [Chlamydophila
           abortus S26/3]
 gi|81312959|sp|Q5L6P3|CLPP1_CHLAB RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|62147931|emb|CAH63678.1| putative protease proteolytic subunit [Chlamydophila abortus S26/3]
          Length = 192

 Score =  151 bits (381), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 74/179 (41%), Positives = 116/179 (64%), Gaps = 2/179 (1%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I  ++L  R VF +  + D  A     +L +LE  NP + I   INSPGG V AG A++D
Sbjct: 14  IERKILDARRVFFSEPVTDKSAADAIKKLWYLELTNPGQPIVFVINSPGGSVDAGFAVWD 73

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS--GGFSGQASDIE 152
            ++ +  P++T   G AASMGS+L      G RFA P++RI++HQPS  G  +GQA+D++
Sbjct: 74  QIKMMTSPVTTVVTGLAASMGSVLSLCAAPGRRFATPHSRIMIHQPSIGGPITGQATDLD 133

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
            HA++I+K K+R+ ++Y++  G++ E +EK +DRD  M+A EA D+G++D +L S  D+
Sbjct: 134 IHAREILKTKKRIVDVYLEATGQSREVIEKAIDRDTWMTADEAKDFGLLDGILFSFNDL 192


>gi|242910145|ref|YP_002970669.1| Clp protease proteolytic subunit [Alsophila spinulosa]
 gi|218454814|gb|ACK77151.1| Clp protease proteolytic subunit [Alsophila spinulosa]
          Length = 200

 Score =  151 bits (381), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 69/174 (39%), Positives = 113/174 (64%), Gaps = 1/174 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER+  +  Q++D +A  +   +++L  E+  K+  LY+NSPGG V AG+++Y
Sbjct: 22  DVYNRLYRERLPLLGQQVDDEIANQLIGIMMYLNGEDEAKDTYLYVNSPGGAVLAGISVY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           D MQF+ P + T CMG AASMGS + + GE   R ALP+AR+++HQP S  + GQA +  
Sbjct: 82  DAMQFVVPDVHTICMGLAASMGSSISTGGEITRRIALPHARVMIHQPASSYYDGQAGECV 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             A++++K++  +  +Y +  GK    + + ++RD  +SA EA D+GV D V +
Sbjct: 142 MEAEEVLKLRDCITRVYAQRTGKPLWMISEDMERDVFLSAEEAQDYGVADPVAL 195


>gi|241205772|ref|YP_002976868.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240859662|gb|ACS57329.1| Endopeptidase Clp [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 194

 Score =  151 bits (381), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 74/175 (42%), Positives = 112/175 (64%), Gaps = 1/175 (0%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           + L K R +F+ G I   +A  +C+QL+ L A +  ++I +Y+NSPGG V +G +I+D +
Sbjct: 21  ANLFKSRSIFIYGPINQELAQKVCSQLVALAAAS-DEDIRIYVNSPGGHVESGDSIHDMI 79

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQ 156
           +FIKP +     G  AS G+L+  A  K  R  LPN R LLHQPSGG  G ASDIE  A+
Sbjct: 80  KFIKPKVWMIGTGWVASAGALIYVATPKERRLCLPNTRFLLHQPSGGTRGMASDIEIQAR 139

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           +I+K+  RLN I     G+  ++++K  DRD+ +SA EA ++G+V +++ S+ DI
Sbjct: 140 EIIKMNERLNRIMAAATGQPLDKIDKDTDRDYWLSAEEAKEYGLVSRIVTSQADI 194


>gi|149390378|ref|YP_001294377.1| ATP-dependent Clp protease proteolytic subunit [Dioscorea
           elephantipes]
 gi|160380552|sp|A6MMN2|CLPP_DIOEL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|148668070|gb|ABR01454.1| clp protease proteolytic subunit [Dioscorea elephantipes]
          Length = 203

 Score =  151 bits (381), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 70/169 (41%), Positives = 112/169 (66%), Gaps = 1/169 (0%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           +RL +ER++F+  ++++ ++  +   +++L  E+  K++ L+INSPGG V  GMAIYDTM
Sbjct: 24  NRLHRERLLFLGQEVDNEVSNQLVGLMVYLSIEDATKDLYLFINSPGGWVIPGMAIYDTM 83

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIERHA 155
           QF+ P + T CMG AASMGSL+L  GE   R A P+AR+++HQP+  F   QA +    A
Sbjct: 84  QFVSPDVHTICMGLAASMGSLILVGGEITKRLAFPHARVMIHQPASSFYEAQAGEFILEA 143

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           ++++K++  L ++YV+  G     V + ++RD  MSA+EA   G+VD V
Sbjct: 144 EELLKLRETLTKVYVQRTGNPLWAVSEDMERDAFMSATEAQAHGIVDLV 192


>gi|160332321|sp|P56772|CLPP1_ARATH RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase ClpP1; Short=pClpP
          Length = 196

 Score =  151 bits (381), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 69/178 (38%), Positives = 116/178 (65%), Gaps = 2/178 (1%)

Query: 29  GERSY-DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVT 87
           G+ S+ DIY+RL +ER+ F+  +++  ++  + + +++L  E   K++ L+INSPGG V 
Sbjct: 16  GDTSWVDIYNRLYRERLFFLGQEVDTEISNQLISLMIYLSIEKDTKDLYLFINSPGGWVI 75

Query: 88  AGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SG 146
           +GMAIYDTMQF++P + T CMG AAS+ S +L  G    R A P+AR+++HQP+  F   
Sbjct: 76  SGMAIYDTMQFVRPDVQTICMGLAASIASFILVGGAITKRIAFPHARVMIHQPASSFYEA 135

Query: 147 QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           Q  +    A++++K++  +  +YV+  GK    + + ++RD  MSA+EA  +G+VD V
Sbjct: 136 QTGEFILEAEELLKLRETITRVYVQRTGKPIWVISEDMERDVFMSATEAQAYGIVDLV 193


>gi|254431834|ref|ZP_05045537.1| Clp protease [Cyanobium sp. PCC 7001]
 gi|197626287|gb|EDY38846.1| Clp protease [Cyanobium sp. PCC 7001]
          Length = 232

 Score =  151 bits (381), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 80/190 (42%), Positives = 117/190 (61%), Gaps = 19/190 (10%)

Query: 41  KERIVFV----------TGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG------- 83
           KERIV++            Q+   +  LI AQLL+LE +NP+K I  YINS G       
Sbjct: 27  KERIVYLGLPLFSDDEAKRQMGIDVTELIIAQLLYLEFDNPEKPIFFYINSTGTSWFTGD 86

Query: 84  --GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
             G  T   AI DT++++KPP+ T C+GQA    +++LSAG KG R ALP+A I+LHQP 
Sbjct: 87  AIGFETEAFAIADTIRYVKPPVHTICIGQAMGTAAMILSAGTKGQRAALPHATIVLHQPR 146

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            G  GQASDI+  AQ+++  KR + ++   N GK+ E++ K  DR   ++A +A D+G++
Sbjct: 147 SGAQGQASDIQIRAQEVLHNKRTMLQMLADNTGKSVEQLSKDSDRMTYLTAEQAKDYGLI 206

Query: 202 DKVLMSRIDI 211
           D+VL S+ D+
Sbjct: 207 DRVLTSQKDV 216


>gi|602758|gb|AAA81878.1| clp-like energy-dependent protease [Solanum lycopersicum]
          Length = 275

 Score =  151 bits (381), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 66/172 (38%), Positives = 111/172 (64%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+ + L + RI+F+   +   +A  + +QL+ L   +   +I +Y+N PGG   + +AIY
Sbjct: 100 DLSTVLFRNRIIFIGQPVNSAVAQKVISQLVTLATIDENADILIYLNCPGGSTYSVLAIY 159

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M +IKP + T C G AAS G+LLL+ GEKGMR+A+PNARI++HQP  G  G   D+ R
Sbjct: 160 DCMSWIKPKVGTVCFGAAASQGALLLAGGEKGMRYAMPNARIMIHQPQSGCGGHVEDVRR 219

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
              + V+ +++++++Y    G++ E ++   +RD  MS++EA ++G++D VL
Sbjct: 220 QVNEAVQSRQKVDKMYAAFTGQSIEMIQTYTERDRFMSSAEAMEFGLIDGVL 271


>gi|283783340|ref|YP_003374094.1| Clp protease [Gardnerella vaginalis 409-05]
 gi|297243348|ref|ZP_06927281.1| ATP-dependent Clp protease, protease subunit [Gardnerella vaginalis
           AMD]
 gi|283442109|gb|ADB14575.1| Clp protease [Gardnerella vaginalis 409-05]
 gi|296888595|gb|EFH27334.1| ATP-dependent Clp protease, protease subunit [Gardnerella vaginalis
           AMD]
          Length = 224

 Score =  151 bits (381), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 82/192 (42%), Positives = 131/192 (68%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   EQT  G ++ D Y++L ++RI+F+  Q++D  A  I AQLL LE+ +  +++ +
Sbjct: 32  VLPQFGEQTPYGMKTQDPYTKLFEDRIIFMGVQVDDTSADDIMAQLLVLESMDSDRDVMM 91

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQ+I P + T C+GQAAS  +++L+AG  G R  LPNAR+L+
Sbjct: 92  YINSPGGSMTAMTAIYDTMQYINPDVQTVCLGQAASAAAIILAAGAAGKRMILPNARVLI 151

Query: 138 HQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+ G   G+A++IE  A+++++++  L     K+ G+  E + K ++ D I++A EA 
Sbjct: 152 HQPAMGQDFGKATEIELQAKEMLRLRSWLESTLAKHTGQDIERIRKDIEVDTILTAPEAK 211

Query: 197 DWGVVDKVLMSR 208
            +G+VD+VL  R
Sbjct: 212 AYGMVDEVLERR 223


>gi|110589386|gb|ABG77202.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Endoriftia
           persephone 'Hot96_1+Hot96_2']
          Length = 150

 Score =  150 bits (380), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 69/144 (47%), Positives = 104/144 (72%), Gaps = 1/144 (0%)

Query: 66  LEAENPQKEISLYINSP-GGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           L++E   + +   I+ P GG VTAGM+IYDTMQFI+P +ST C+GQAASMG+LLL+ G  
Sbjct: 1   LKSEKSGQGMFTSISIPRGGPVTAGMSIYDTMQFIRPDVSTMCIGQAASMGALLLTGGAP 60

Query: 125 GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
           G R+ LPN+R+++HQP GG  GQASDIE HA++I+ ++ RLNEI   + G++ +++    
Sbjct: 61  GKRYCLPNSRMMIHQPLGGVQGQASDIEIHAKEILLLRERLNEILAHHTGQSLKQIAADT 120

Query: 185 DRDHIMSASEACDWGVVDKVLMSR 208
           +RD+ +   +A  +G++D+VL  R
Sbjct: 121 ERDNFLGGEDAVAYGLIDQVLAQR 144


>gi|328880887|emb|CCA54126.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           venezuelae ATCC 10712]
          Length = 207

 Score =  150 bits (380), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 75/193 (38%), Positives = 121/193 (62%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T+ G R+ D YS+LL+ RIVF+   I++  A  + AQLL+L+   P ++I+L
Sbjct: 6   VLPAFTERTSYGTRTLDPYSKLLESRIVFLGTPIDETAANDVIAQLLYLDHAGPDQDIAL 65

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+A  AIYDTM  +   + T C+GQA S  ++LL+AG  G R  LP AR+ L
Sbjct: 66  YINSPGGSVSAMTAIYDTMGSLHCDLETTCLGQAMSTAAVLLAAGTPGKRMMLPGARVTL 125

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
            +P+      GQ SD++  A+++++++  +  +   + G+  E ++  LDR  ++ A  A
Sbjct: 126 QEPAMDEPLRGQPSDLDLQAREMLRLRALMAGMLTAHTGRDRERIDADLDRLTVLDAPAA 185

Query: 196 CDWGVVDKVLMSR 208
             +G+VD V+ SR
Sbjct: 186 LAYGLVDHVITSR 198


>gi|255507017|ref|ZP_05382656.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis D(s)2923]
 gi|289525475|emb|CBJ14952.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis Sweden2]
 gi|296435027|gb|ADH17205.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis E/150]
 gi|296438747|gb|ADH20900.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis E/11023]
          Length = 192

 Score =  150 bits (380), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 76/179 (42%), Positives = 116/179 (64%), Gaps = 2/179 (1%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I  +LL  R +F +  + +  A     +L +LE  NP + I   INSPGG V AG A++D
Sbjct: 14  IDRKLLDSRRIFFSEPVTEKSAAEAIKKLWYLELTNPGQPIVFVINSPGGSVDAGFAVWD 73

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS--GGFSGQASDIE 152
            ++ I  P++T   G AASMGS+L      G RFA P+ARI++HQPS  G  +GQA+D++
Sbjct: 74  QIKMISSPLTTVVTGLAASMGSVLSLCAVPGRRFATPHARIMIHQPSIGGTITGQATDLD 133

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
            HA++I+K K R+ ++YV+  G++ E +EK +DRD  MSA+EA ++G++D +L S  D+
Sbjct: 134 IHAREILKTKARIIDVYVEATGQSREVIEKAIDRDMWMSANEAIEFGLLDGILFSFNDL 192


>gi|114329994|ref|YP_740675.1| clp protease proteolytic subunit [Nandina domestica]
 gi|122165937|sp|Q09FT6|CLPP_NANDO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|114054496|gb|ABI49889.1| clp protease proteolytic subunit [Nandina domestica]
          Length = 202

 Score =  150 bits (380), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 69/172 (40%), Positives = 111/172 (64%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  +++  ++  +   +++L  E+  K++ L+INSPGG V  G+AIY
Sbjct: 22  DVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDETKDLYLFINSPGGWVIPGVAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF+ P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F   Q  +  
Sbjct: 82  DTMQFVPPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFV 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  L  +YV+  G     V + ++RD  MSA+EA   G+VD V
Sbjct: 142 LEAEELLKLRETLTRVYVQRTGNPLWVVSEDMERDVFMSATEAQAHGIVDLV 193


>gi|89898588|ref|YP_515698.1| ATP-dependent Clp protease proteolytic subunit [Chlamydophila felis
           Fe/C-56]
 gi|116243111|sp|Q253I5|CLPP2_CHLFF RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|89331960|dbj|BAE81553.1| ATP-dependent Clp endopeptidase ATP-binding proteolytic subunit 1
           [Chlamydophila felis Fe/C-56]
          Length = 196

 Score =  150 bits (380), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 75/179 (41%), Positives = 115/179 (64%), Gaps = 2/179 (1%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I  ++L  R VF +  + D  A     +L +LE  NP + I   INSPGG V AG A++D
Sbjct: 18  IDRKILDTRRVFFSEPVTDKSAADAIKKLWYLELTNPGQPIVFVINSPGGSVDAGFAVWD 77

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS--GGFSGQASDIE 152
            ++ +  P++T   G AASMGS+L      G RFA P++RI++HQPS  G  +GQA+D++
Sbjct: 78  QIKMMTSPVTTVVTGLAASMGSVLSLCAAPGRRFATPHSRIMIHQPSIGGPITGQATDLD 137

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
            HA++I+K K+R+ ++YV+  G+  E +EK +DRD  M+A EA D+G++D +L S  D+
Sbjct: 138 IHAREILKTKKRIVDVYVEATGQPREVIEKAIDRDMWMTADEAKDFGLLDGILFSFNDL 196


>gi|290489446|gb|ADD31107.1| clp protease proteolytic subunit protein [Nelumbo nucifera]
          Length = 202

 Score =  150 bits (380), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 69/172 (40%), Positives = 112/172 (65%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  +++  ++  +   +++L  E+  K++ L+INSPGG V  G+AIY
Sbjct: 22  DVYNRLHRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGIAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF+ P + T CMG AASMGS +L+ GE   R A P+AR+++HQP+  F   Q  +  
Sbjct: 82  DTMQFVPPDVHTICMGLAASMGSFILAGGEITKRLAFPHARVMIHQPASSFYEAQTGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  L  +YV+  G     V + ++RD  MSA+EA   G+VD V
Sbjct: 142 LEAEELLKLRETLTRVYVQRTGNPLWVVSEDMERDVFMSATEAQAHGIVDLV 193


>gi|166235685|gb|ABY85594.1| ATP-dependent protease proteolytic subunit [Silene integripetala]
          Length = 196

 Score =  150 bits (380), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 69/172 (40%), Positives = 113/172 (65%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  +++  ++  +   +++L  E+  K++ L+INSPGG V  G+AI 
Sbjct: 22  DVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIX 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF++P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F   Q  +  
Sbjct: 82  DTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  L  +YV+  GK+   V + ++RD  MSA+EA   G+VD V
Sbjct: 142 LEAEELLKLRETLTRVYVQRTGKSTWVVSEDMERDVFMSAAEAQAHGIVDLV 193


>gi|210076021|ref|XP_505327.2| YALI0F12353p [Yarrowia lipolytica]
 gi|199424953|emb|CAG78134.2| YALI0F12353p [Yarrowia lipolytica]
          Length = 263

 Score =  150 bits (380), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 70/137 (51%), Positives = 95/137 (69%)

Query: 33  YDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI 92
           +DI ++LL ERIV V G I+D MAT + AQLL+LE ++ QK I +YINSPGG VTAG AI
Sbjct: 44  HDIPAKLLNERIVHVAGPIDDSMATSVVAQLLYLEHKSAQKPIHMYINSPGGAVTAGFAI 103

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIE 152
            DTM +I+ P+ T C+GQAASM SLLL+ G  G R   PN+ I+ H+P GG  G +  +E
Sbjct: 104 LDTMNYIRSPVHTVCLGQAASMASLLLTCGAPGNRIMTPNSTIMTHEPLGGIVGSSKLVE 163

Query: 153 RHAQDIVKIKRRLNEIY 169
            H   + +I+ R+ ++Y
Sbjct: 164 LHTFHLQRIRTRIIQLY 180


>gi|156085800|ref|XP_001610309.1| ATP-dependent Clp protease proteolytic subunit  [Babesia bovis
           T2Bo]
 gi|154797562|gb|EDO06741.1| ATP-dependent Clp protease proteolytic subunit , putative [Babesia
           bovis]
          Length = 200

 Score =  150 bits (380), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 72/189 (38%), Positives = 125/189 (66%), Gaps = 2/189 (1%)

Query: 19  VPMVVEQTNRGERS--YDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP+V  +    +RS  +DI++RL +ERI+FV+  +++    +I   LL L++++ +K I+
Sbjct: 6   VPLVEYKIPGTQRSEFHDIHTRLYRERILFVSQSLDESYTNMIIGTLLCLDSDSNEKPIT 65

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINS GG  TAG+ +YDT++ +K  I+T  +G  ++  SLLL++G  GMR ALP++R++
Sbjct: 66  LYINSQGGPSTAGITLYDTIKHLKSKIATINVGFCSATASLLLASGTPGMRSALPHSRVV 125

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP+G   G A  I   AQ ++ +KR L ++Y +   +  + + K L+R+  MSA E+ 
Sbjct: 126 MHQPAGTLEGSAEQIRSQAQYMLNMKRILQKLYSQVTNQPLDNIAKDLEREQFMSAEESL 185

Query: 197 DWGVVDKVL 205
            +G+VD+++
Sbjct: 186 QYGLVDRII 194


>gi|46446077|ref|YP_007442.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|67460481|sp|Q6ME32|CLPP1_PARUW RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|46399718|emb|CAF23167.1| probable ATP-dependent Clp protease proteolytic subunit [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 206

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 75/176 (42%), Positives = 114/176 (64%), Gaps = 2/176 (1%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           +L  R +F++  ++   A+ I  +L +LE  +P K I   INSPGG V +G AI+D ++ 
Sbjct: 29  ILDSRRIFISDAVDSGSASEIIRKLWYLELTDPGKPILFVINSPGGAVDSGFAIWDQIKM 88

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP--SGGFSGQASDIERHAQ 156
           I  P++T   G AASMGS+L      G RFA P++RI++HQP  SG   GQA+D+E  A+
Sbjct: 89  ITSPVTTLVTGLAASMGSILSLCASPGRRFATPHSRIMIHQPLLSGVIKGQATDLEIQAK 148

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
           +++K +  L EIYV+  GK +  +EK +DRD  M+A EA ++G++DKV+ S  +IE
Sbjct: 149 EMLKTRNGLIEIYVQATGKNFAAIEKAIDRDTWMTAQEALEFGLLDKVINSFEEIE 204


>gi|91202650|emb|CAJ72289.1| similar to ATP-dependent endopeptidase Clp [Candidatus Kuenenia
           stuttgartiensis]
          Length = 208

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 73/179 (40%), Positives = 114/179 (63%), Gaps = 1/179 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+ +RLLK R + VT ++   MA  +  QLL LEA+N + +I ++INSPGG   AG A+Y
Sbjct: 30  DLIARLLKTRTIIVTDEVNKKMAERVITQLLLLEADNDE-DIRVFINSPGGDADAGFAMY 88

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D ++F+KP I   C G  AS   ++L   +K  R++LP++RIL+HQPS G  G ASD++ 
Sbjct: 89  DMLRFVKPKIKAICSGVVASAAVIILLGAKKEDRYSLPSSRILIHQPSTGIHGTASDLQI 148

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
            A +I+K + ++N +     G+   +VE    R+  MSA EAC +G+V+K++ S  D++
Sbjct: 149 EATEILKCREKMNRMISVETGQPIGKVETDTKRNFWMSAEEACQYGLVNKIISSSDDLK 207


>gi|290489434|gb|ADD31101.1| clp protease proteolytic subunit protein [Aucuba japonica]
          Length = 198

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 70/174 (40%), Positives = 114/174 (65%), Gaps = 3/174 (1%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  +++  ++  +   +++L  E+  K++ L+INSPGG V  G+AIY
Sbjct: 22  DVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA--RILLHQPSGGF-SGQASD 150
           DTMQF++P + T CMG AASMGS +L  GE   R A P+A  R+++HQP+  F   Q  +
Sbjct: 82  DTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHAQIRVMIHQPASSFYEAQTGE 141

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
               A++++K++  L  +YV+  GK    V + ++RD  MSA+EA  +G+VD V
Sbjct: 142 FILEAEELLKLRESLTRVYVQRTGKPLWVVSEDMERDVFMSATEAQAYGIVDLV 195


>gi|166154644|ref|YP_001654762.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis 434/Bu]
 gi|166155519|ref|YP_001653774.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis L2b/UCH-1/proctitis]
 gi|301335911|ref|ZP_07224155.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis L2tet1]
 gi|190358743|sp|B0B803|CLPP1_CHLT2 RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|165930632|emb|CAP04129.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis 434/Bu]
 gi|165931507|emb|CAP07083.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis L2b/UCH-1/proctitis]
          Length = 192

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 76/179 (42%), Positives = 116/179 (64%), Gaps = 2/179 (1%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I  +LL  R +F +  + +  A     +L +LE  NP + I   INSPGG V AG A++D
Sbjct: 14  IDRKLLDSRRIFFSEPVTEKSAAEAIKKLWYLELTNPGQPIVFVINSPGGSVDAGFAVWD 73

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS--GGFSGQASDIE 152
            ++ I  P++T   G AASMGS+L      G RFA P+ARI++HQPS  G  +GQA+D++
Sbjct: 74  QIKMISSPLTTVVTGLAASMGSVLSLCAVPGRRFATPHARIMIHQPSIGGTITGQATDLD 133

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
            HA++I+K K R+ ++YV+  G++ E +EK +DRD  MSA+EA ++G++D +L S  D+
Sbjct: 134 IHAREILKTKARIIDVYVEATGQSPEVIEKAIDRDMWMSANEAMEFGLLDGILFSFNDL 192


>gi|50843046|ref|YP_056273.1| ATP-dependent Clp protease proteolytic subunit 2 [Propionibacterium
           acnes KPA171202]
 gi|50840648|gb|AAT83315.1| ATP-dependent Clp protease proteolytic subunit 2 [Propionibacterium
           acnes KPA171202]
          Length = 253

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 78/191 (40%), Positives = 128/191 (67%), Gaps = 2/191 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P   E+T+ G R  D Y++L ++RI+F+   + D +A  + AQLL L++ +  ++IS+Y
Sbjct: 62  IPQWEERTSYGVRRVDPYTKLFEDRIIFLGTPVTDDIANAVMAQLLCLQSMDADRQISMY 121

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TA  AIYDTM +++P I T C+G AAS  ++LL+AG KG R +LPN+ +L+H
Sbjct: 122 INSPGGSFTAMTAIYDTMNYVRPDIQTICLGMAASAAAVLLAAGAKGQRLSLPNSTVLIH 181

Query: 139 QPSGGFS--GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           QP+ G +  GQA+DIE    +I +I++ +  +     G++ E++ K +DRD  ++A  A 
Sbjct: 182 QPAMGQATYGQATDIEILDDEIQRIRKLMENMLATATGQSVEQISKDIDRDKYLTAQGAK 241

Query: 197 DWGVVDKVLMS 207
           ++G++D +L S
Sbjct: 242 EYGLIDDILTS 252


>gi|302540393|ref|ZP_07292735.1| Clp protease [Streptomyces hygroscopicus ATCC 53653]
 gi|302458011|gb|EFL21104.1| Clp protease [Streptomyces himastatinicus ATCC 53653]
          Length = 211

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 85/193 (44%), Positives = 122/193 (63%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T+ G R+ D YS+LL ERIVF+   ++D  A  + AQL+ LE   P +++SL
Sbjct: 9   VLPEFTERTSSGVRTMDPYSKLLSERIVFLGTPVDDTAANDVIAQLIHLEHAGPDQDVSL 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG   A  AIYDTM+F+   I T C+GQAAS  ++LL+AG  G R ALP AR+L+
Sbjct: 69  YINSPGGSFGAMTAIYDTMRFVTCDIETICLGQAASAAAVLLAAGAPGKRLALPGARVLI 128

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQ   S    G  SD+E  A ++++ +  L E+ V++ G++ E +   +DRD I  A  A
Sbjct: 129 HQAALSEPIEGTTSDLEIQAGELLRTQALLEEMLVRHTGQSAERIRADIDRDRIFDAEAA 188

Query: 196 CDWGVVDKVLMSR 208
             +G+VD V  SR
Sbjct: 189 VAYGLVDGVTQSR 201


>gi|33240836|ref|NP_875778.1| ATP-dependent Clp protease-like protein [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
 gi|33238365|gb|AAQ00431.1| Protease subunit of ATP-dependent Clp protease [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
          Length = 221

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 82/193 (42%), Positives = 116/193 (60%), Gaps = 19/193 (9%)

Query: 41  KERIVFV----------TGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG------- 83
           KERIV++            Q+   +  LI AQLLFLE +NP+K I  YINS G       
Sbjct: 27  KERIVYLGLPLFSDDDAKRQLGMDVTELIIAQLLFLEFDNPEKPIYFYINSTGTSWHTGD 86

Query: 84  --GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
             G  T   AI DT+ +IKPPI T C+GQA    +++LS G KG R ALP+A I+LHQP 
Sbjct: 87  AIGFETEAFAICDTISYIKPPIHTICIGQAMGTAAVILSGGSKGHRAALPHASIVLHQPR 146

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            G SGQA+DI+  A++++  K+ + EI  KN GK+  ++ K  DR   ++  EA ++G++
Sbjct: 147 SGASGQATDIQIRAKEVIHNKQAMLEILSKNTGKSVSQLSKDSDRMSYLNPHEAVEYGLI 206

Query: 202 DKVLMSRIDIEEK 214
           D+VL SR D+ + 
Sbjct: 207 DRVLTSRKDLPKN 219


>gi|313763509|gb|EFS34873.1| Clp protease [Propionibacterium acnes HL013PA1]
 gi|313773446|gb|EFS39412.1| Clp protease [Propionibacterium acnes HL074PA1]
 gi|313793898|gb|EFS41922.1| Clp protease [Propionibacterium acnes HL110PA1]
 gi|313801289|gb|EFS42540.1| Clp protease [Propionibacterium acnes HL110PA2]
 gi|313808032|gb|EFS46513.1| Clp protease [Propionibacterium acnes HL087PA2]
 gi|313811499|gb|EFS49213.1| Clp protease [Propionibacterium acnes HL083PA1]
 gi|313813441|gb|EFS51155.1| Clp protease [Propionibacterium acnes HL025PA1]
 gi|313819598|gb|EFS57312.1| Clp protease [Propionibacterium acnes HL046PA2]
 gi|313822077|gb|EFS59791.1| Clp protease [Propionibacterium acnes HL036PA1]
 gi|313823689|gb|EFS61403.1| Clp protease [Propionibacterium acnes HL036PA2]
 gi|313826013|gb|EFS63727.1| Clp protease [Propionibacterium acnes HL063PA1]
 gi|313829482|gb|EFS67196.1| Clp protease [Propionibacterium acnes HL063PA2]
 gi|313831240|gb|EFS68954.1| Clp protease [Propionibacterium acnes HL007PA1]
 gi|313834852|gb|EFS72566.1| Clp protease [Propionibacterium acnes HL056PA1]
 gi|313839988|gb|EFS77702.1| Clp protease [Propionibacterium acnes HL086PA1]
 gi|314914808|gb|EFS78639.1| Clp protease [Propionibacterium acnes HL005PA4]
 gi|314919376|gb|EFS83207.1| Clp protease [Propionibacterium acnes HL050PA1]
 gi|314920716|gb|EFS84547.1| Clp protease [Propionibacterium acnes HL050PA3]
 gi|314924727|gb|EFS88558.1| Clp protease [Propionibacterium acnes HL036PA3]
 gi|314930596|gb|EFS94427.1| Clp protease [Propionibacterium acnes HL067PA1]
 gi|314954449|gb|EFS98855.1| Clp protease [Propionibacterium acnes HL027PA1]
 gi|314957524|gb|EFT01627.1| Clp protease [Propionibacterium acnes HL002PA1]
 gi|314961994|gb|EFT06095.1| Clp protease [Propionibacterium acnes HL002PA2]
 gi|314963747|gb|EFT07847.1| Clp protease [Propionibacterium acnes HL082PA1]
 gi|314968426|gb|EFT12524.1| Clp protease [Propionibacterium acnes HL037PA1]
 gi|314974116|gb|EFT18212.1| Clp protease [Propionibacterium acnes HL053PA1]
 gi|314976594|gb|EFT20689.1| Clp protease [Propionibacterium acnes HL045PA1]
 gi|314978951|gb|EFT23045.1| Clp protease [Propionibacterium acnes HL072PA2]
 gi|314984413|gb|EFT28505.1| Clp protease [Propionibacterium acnes HL005PA1]
 gi|314986606|gb|EFT30698.1| Clp protease [Propionibacterium acnes HL005PA2]
 gi|314990963|gb|EFT35054.1| Clp protease [Propionibacterium acnes HL005PA3]
 gi|315079595|gb|EFT51588.1| Clp protease [Propionibacterium acnes HL053PA2]
 gi|315081176|gb|EFT53152.1| Clp protease [Propionibacterium acnes HL078PA1]
 gi|315083638|gb|EFT55614.1| Clp protease [Propionibacterium acnes HL027PA2]
 gi|315087058|gb|EFT59034.1| Clp protease [Propionibacterium acnes HL002PA3]
 gi|315089233|gb|EFT61209.1| Clp protease [Propionibacterium acnes HL072PA1]
 gi|315095255|gb|EFT67231.1| Clp protease [Propionibacterium acnes HL038PA1]
 gi|315099137|gb|EFT71113.1| Clp protease [Propionibacterium acnes HL059PA2]
 gi|315100380|gb|EFT72356.1| Clp protease [Propionibacterium acnes HL046PA1]
 gi|315106805|gb|EFT78781.1| Clp protease [Propionibacterium acnes HL030PA1]
 gi|315108934|gb|EFT80910.1| Clp protease [Propionibacterium acnes HL030PA2]
 gi|327328482|gb|EGE70244.1| Clp protease [Propionibacterium acnes HL096PA2]
 gi|327329652|gb|EGE71408.1| Clp protease [Propionibacterium acnes HL096PA3]
 gi|327334167|gb|EGE75881.1| Clp protease [Propionibacterium acnes HL097PA1]
 gi|327444269|gb|EGE90923.1| Clp protease [Propionibacterium acnes HL043PA2]
 gi|327444851|gb|EGE91505.1| Clp protease [Propionibacterium acnes HL043PA1]
 gi|327446337|gb|EGE92991.1| Clp protease [Propionibacterium acnes HL013PA2]
 gi|327452075|gb|EGE98729.1| Clp protease [Propionibacterium acnes HL092PA1]
 gi|327454888|gb|EGF01543.1| Clp protease [Propionibacterium acnes HL087PA3]
 gi|327457827|gb|EGF04482.1| Clp protease [Propionibacterium acnes HL083PA2]
 gi|328752326|gb|EGF65942.1| Clp protease [Propionibacterium acnes HL020PA1]
 gi|328755279|gb|EGF68895.1| Clp protease [Propionibacterium acnes HL087PA1]
 gi|328758240|gb|EGF71856.1| Clp protease [Propionibacterium acnes HL025PA2]
 gi|328760011|gb|EGF73594.1| Clp protease [Propionibacterium acnes HL099PA1]
          Length = 244

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 78/191 (40%), Positives = 128/191 (67%), Gaps = 2/191 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P   E+T+ G R  D Y++L ++RI+F+   + D +A  + AQLL L++ +  ++IS+Y
Sbjct: 53  IPQWEERTSYGVRRVDPYTKLFEDRIIFLGTPVTDDIANAVMAQLLCLQSMDADRQISMY 112

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TA  AIYDTM +++P I T C+G AAS  ++LL+AG KG R +LPN+ +L+H
Sbjct: 113 INSPGGSFTAMTAIYDTMNYVRPDIQTICLGMAASAAAVLLAAGAKGQRLSLPNSTVLIH 172

Query: 139 QPSGGFS--GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           QP+ G +  GQA+DIE    +I +I++ +  +     G++ E++ K +DRD  ++A  A 
Sbjct: 173 QPAMGQATYGQATDIEILDDEIQRIRKLMENMLATATGQSVEQISKDIDRDKYLTAQGAK 232

Query: 197 DWGVVDKVLMS 207
           ++G++D +L S
Sbjct: 233 EYGLIDDILTS 243


>gi|218192668|gb|EEC75095.1| hypothetical protein OsI_11253 [Oryza sativa Indica Group]
          Length = 464

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 68/138 (49%), Positives = 100/138 (72%)

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           N  ++I +Y+NSPGG VTAGMAI+DTM+ I+P +ST C+G AASMG+ LLSAG KG R++
Sbjct: 315 NLTEDIIMYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCIGLAASMGAFLLSAGTKGKRYS 374

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPN+RI++HQP GG  GQ +D+E  A +++  K  LN     + G+  +++    DRD+ 
Sbjct: 375 LPNSRIMIHQPLGGAQGQETDLEIQANEMLHHKANLNGYLAYHTGQPLDKINVDTDRDYF 434

Query: 190 MSASEACDWGVVDKVLMS 207
           MSA EA ++G++D V+M+
Sbjct: 435 MSAKEAKEYGLIDGVIMN 452


>gi|150251498|ref|YP_001312231.1| ATP-dependent Clp protease proteolytic subunit [Cycas taitungensis]
 gi|160380551|sp|A6H5K6|CLPP_CYCTA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|149941548|dbj|BAF64972.1| ATP-dependent Clp protease proteolytic subunit [Cycas taitungensis]
          Length = 195

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 71/169 (42%), Positives = 111/169 (65%), Gaps = 1/169 (0%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           +RL +ER++F   Q++D +A  +   +++L  E+  K+I  YINSPGG V  G++IYD M
Sbjct: 18  NRLYRERLLFPGQQVDDEIANQLIGIMMYLNGEDENKDIYPYINSPGGAVIPGISIYDAM 77

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIERHA 155
           QF+ P + T CMG AASMGS +L+ GE   R ALP+AR+++HQP S  + GQA +    A
Sbjct: 78  QFVVPDVHTICMGLAASMGSSVLTGGEITKRIALPHARVMIHQPASSYYDGQAGECIMEA 137

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           ++++K++  +  +YV+  GK    +   ++RD  MSA+EA  +G+VD V
Sbjct: 138 EEVLKLRDSITNVYVQRTGKPLWVISGDMERDVFMSATEAQAYGIVDLV 186


>gi|91209012|ref|YP_538874.1| ATP-dependent Clp protease proteolytic subunit [Solanum
           bulbocastanum]
 gi|108773154|ref|YP_635664.1| ATP-dependent Clp protease proteolytic subunit [Solanum tuberosum]
 gi|122196329|sp|Q27S24|CLPP_SOLTU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|122201813|sp|Q2MIG3|CLPP_SOLBU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|84371919|gb|ABC56237.1| clp protease proteolytic subunit [Solanum bulbocastanum]
 gi|88656828|gb|ABD47081.1| clp protease proteolytic subunit [Solanum tuberosum]
          Length = 198

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 68/172 (39%), Positives = 111/172 (64%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+   I   ++  +   +++L  E+  KE+ L++NSPGG V  G+AIY
Sbjct: 22  DVYNRLYRERLLFLGQGISTDLSNQLIGLMMYLSMEDENKELYLFVNSPGGWVIPGIAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS-GQASDIE 152
           DTMQF++P I T C+G AASMGS +L+ G+   R A P+AR+++H+P   F   Q  +  
Sbjct: 82  DTMQFVRPDIHTICIGLAASMGSFILAGGQLTKRIAFPHARVMIHEPYSAFYMAQVGEFV 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A +++K++  L  +Y +  GK +  V + ++RD  MSA+EA  +G+VD V
Sbjct: 142 MEAVELMKLRETLTRVYAERTGKPFWVVHEDMERDIFMSATEAQAYGIVDFV 193


>gi|317970580|ref|ZP_07971970.1| ATP-dependent Clp protease-like protein [Synechococcus sp. CB0205]
          Length = 225

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 80/190 (42%), Positives = 117/190 (61%), Gaps = 19/190 (10%)

Query: 41  KERIVFV----------TGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG------- 83
           KERIV++            Q+   +  LI AQLL+LE +NP+K I  YINS G       
Sbjct: 27  KERIVYLGLPLFSDDDAKRQMGIDVTELIIAQLLYLEFDNPEKPIFFYINSTGTSWYSGD 86

Query: 84  --GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
             G  T   AI DT++++KPP+ T C+GQA    +++LSAG KG R ALP+A I+LHQP 
Sbjct: 87  AIGFETEAFAIADTIRYVKPPVHTICIGQAMGTAAMILSAGTKGHRAALPHASIVLHQPR 146

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            G  GQASDI+  A++++  KR + E+   N GK+ EE+ K  DR   ++A +A ++G++
Sbjct: 147 SGARGQASDIQIRAKEVLHNKRTMLEMLAANTGKSTEELSKASDRMTYLTAEQAVEFGLI 206

Query: 202 DKVLMSRIDI 211
           D+VL S+ D+
Sbjct: 207 DRVLTSQKDL 216


>gi|15835330|ref|NP_297089.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia muridarum
           Nigg]
 gi|7190745|gb|AAF39527.1| ATP-dependent Clp protease, proteolytic subunit [Chlamydia
           muridarum Nigg]
          Length = 196

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 77/181 (42%), Positives = 117/181 (64%), Gaps = 3/181 (1%)

Query: 34  DIYSR-LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI 92
           DI  R LL  R +F +  + +  A     +L +LE  +P + I   INSPGG V AG A+
Sbjct: 16  DIIDRKLLDSRRIFFSEPVTEKSAAEAIKKLWYLELTSPGQPIVFVINSPGGSVDAGFAV 75

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS--GGFSGQASD 150
           +D ++ I  P++T   G AASMGS+L      G RFA P+ARI++HQPS  G  +GQA+D
Sbjct: 76  WDQIKMISSPVTTVVTGLAASMGSVLSLCAAPGRRFATPHARIMIHQPSIGGTITGQATD 135

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           ++ HA++I+K K R+ ++YV+  G++ E +EK +DRD  MSA+EA ++G++D +L S  D
Sbjct: 136 LDIHAREILKTKARIIDVYVEATGQSREVIEKAIDRDMWMSANEAMEFGLLDGILFSFND 195

Query: 211 I 211
           +
Sbjct: 196 L 196


>gi|314923824|gb|EFS87655.1| Clp protease [Propionibacterium acnes HL001PA1]
 gi|314966161|gb|EFT10260.1| Clp protease [Propionibacterium acnes HL082PA2]
 gi|314982026|gb|EFT26119.1| Clp protease [Propionibacterium acnes HL110PA3]
 gi|315090840|gb|EFT62816.1| Clp protease [Propionibacterium acnes HL110PA4]
 gi|315095052|gb|EFT67028.1| Clp protease [Propionibacterium acnes HL060PA1]
 gi|315104285|gb|EFT76261.1| Clp protease [Propionibacterium acnes HL050PA2]
          Length = 244

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 78/191 (40%), Positives = 128/191 (67%), Gaps = 2/191 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P   E+T+ G R  D Y++L ++RI+F+   + D +A  + AQLL L++ +  ++IS+Y
Sbjct: 53  IPQWEERTSYGVRRVDPYTKLFEDRIIFLGTPVTDDIANAVMAQLLCLQSMDADRQISMY 112

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TA  AIYDTM +++P I T C+G AAS  ++LL+AG KG R +LPN+ +L+H
Sbjct: 113 INSPGGSFTAMTAIYDTMNYVRPDIQTICLGMAASAAAVLLAAGAKGQRLSLPNSTVLIH 172

Query: 139 QPSGGFS--GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           QP+ G +  GQA+DIE    +I +I++ +  +     G++ E++ K +DRD  ++A  A 
Sbjct: 173 QPAMGQATYGQATDIEILDDEIQRIRKLMENMLATATGQSVEQISKDIDRDKYLTAQGAK 232

Query: 197 DWGVVDKVLMS 207
           ++G++D +L S
Sbjct: 233 EYGLIDDILTS 243


>gi|148240099|ref|YP_001225486.1| ATP-dependent Clp protease-like protein [Synechococcus sp. WH 7803]
 gi|147848638|emb|CAK24189.1| Protease subunit of ATP-dependent Clp protease [Synechococcus sp.
           WH 7803]
          Length = 223

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 80/190 (42%), Positives = 115/190 (60%), Gaps = 19/190 (10%)

Query: 41  KERIVFV----------TGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG------- 83
           KERIV++            Q+   +  LI AQLL+LE +NP K I  YINS G       
Sbjct: 27  KERIVYLGLPLFSDDDTKRQVGIDVTELIIAQLLYLEFDNPDKPIYFYINSTGTSWYTGD 86

Query: 84  --GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
             G  T   AI DT++++KPP+ T C+GQA    +++LSAG KG R ALP+A I+LHQP 
Sbjct: 87  AIGFETEAFAICDTLRYVKPPVHTICIGQAMGTAAVILSAGTKGQRAALPHASIVLHQPR 146

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            G  GQA+DI+  AQ+++  KR + EI   N G++ EE+ K  DR   ++  +A ++G++
Sbjct: 147 SGARGQATDIQIRAQEVLHNKRAMLEILSTNTGRSVEELSKDSDRMSYLTPEQAKEYGLI 206

Query: 202 DKVLMSRIDI 211
           D+VL SR D+
Sbjct: 207 DRVLTSRKDL 216


>gi|282854723|ref|ZP_06264058.1| Clp protease [Propionibacterium acnes J139]
 gi|289426420|ref|ZP_06428163.1| Clp protease [Propionibacterium acnes SK187]
 gi|289428779|ref|ZP_06430462.1| Clp protease [Propionibacterium acnes J165]
 gi|295131121|ref|YP_003581784.1| Clp protease [Propionibacterium acnes SK137]
 gi|282582305|gb|EFB87687.1| Clp protease [Propionibacterium acnes J139]
 gi|289153148|gb|EFD01866.1| Clp protease [Propionibacterium acnes SK187]
 gi|289158177|gb|EFD06397.1| Clp protease [Propionibacterium acnes J165]
 gi|291375909|gb|ADD99763.1| Clp protease [Propionibacterium acnes SK137]
          Length = 229

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 78/191 (40%), Positives = 128/191 (67%), Gaps = 2/191 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P   E+T+ G R  D Y++L ++RI+F+   + D +A  + AQLL L++ +  ++IS+Y
Sbjct: 38  IPQWEERTSYGVRRVDPYTKLFEDRIIFLGTPVTDDIANAVMAQLLCLQSMDADRQISMY 97

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TA  AIYDTM +++P I T C+G AAS  ++LL+AG KG R +LPN+ +L+H
Sbjct: 98  INSPGGSFTAMTAIYDTMNYVRPDIQTICLGMAASAAAVLLAAGAKGQRLSLPNSTVLIH 157

Query: 139 QPSGGFS--GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           QP+ G +  GQA+DIE    +I +I++ +  +     G++ E++ K +DRD  ++A  A 
Sbjct: 158 QPAMGQATYGQATDIEILDDEIQRIRKLMENMLATATGQSVEQISKDIDRDKYLTAQGAK 217

Query: 197 DWGVVDKVLMS 207
           ++G++D +L S
Sbjct: 218 EYGLIDDILTS 228


>gi|67460473|sp|Q6A7F0|CLPP1_PROAC RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
          Length = 216

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 78/191 (40%), Positives = 128/191 (67%), Gaps = 2/191 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P   E+T+ G R  D Y++L ++RI+F+   + D +A  + AQLL L++ +  ++IS+Y
Sbjct: 25  IPQWEERTSYGVRRVDPYTKLFEDRIIFLGTPVTDDIANAVMAQLLCLQSMDADRQISMY 84

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TA  AIYDTM +++P I T C+G AAS  ++LL+AG KG R +LPN+ +L+H
Sbjct: 85  INSPGGSFTAMTAIYDTMNYVRPDIQTICLGMAASAAAVLLAAGAKGQRLSLPNSTVLIH 144

Query: 139 QPSGGFS--GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           QP+ G +  GQA+DIE    +I +I++ +  +     G++ E++ K +DRD  ++A  A 
Sbjct: 145 QPAMGQATYGQATDIEILDDEIQRIRKLMENMLATATGQSVEQISKDIDRDKYLTAQGAK 204

Query: 197 DWGVVDKVLMS 207
           ++G++D +L S
Sbjct: 205 EYGLIDDILTS 215


>gi|323148930|ref|YP_004222484.1| clp protease proteolytic subunit [Smilax china]
 gi|308742621|gb|ADO33472.1| clp protease proteolytic subunit [Smilax china]
          Length = 204

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 68/172 (39%), Positives = 112/172 (65%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  +++  ++  +   +++L  E+  ++  L+INSPGG V  G+AIY
Sbjct: 22  DVYNRLHRERLLFLGQEVDSEISNQLVGLMVYLSIEDKTRDFFLFINSPGGWVIPGIAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF+ P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F   QA +  
Sbjct: 82  DTMQFVPPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQAGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  + ++YV+  G     V + ++RD  MSA+EA   G+VD V
Sbjct: 142 LEAEELLKLRETITKVYVQRTGNPLWVVSEDMERDVFMSATEAQSHGIVDLV 193


>gi|217073352|gb|ACJ85035.1| unknown [Medicago truncatula]
          Length = 274

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 68/172 (39%), Positives = 110/172 (63%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+ S L + RI+F+   +   +A  + +QL+ L   +P  +I +YIN PGG   + +AIY
Sbjct: 99  DLSSVLFRNRIIFIGQPVNSQVAQRVISQLVTLATIDPDADILMYINCPGGSTYSVLAIY 158

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M +IKP + T C G AAS G+LLL+ GEKGMR+++PNARI+++QP  GF G   D+ R
Sbjct: 159 DCMSWIKPKVGTVCFGVAASQGTLLLAGGEKGMRYSMPNARIMINQPQCGFGGHVEDVRR 218

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
              + V+ + ++ +++    G+  E+V++  +RD  +S SEA + G++D VL
Sbjct: 219 LVNESVQSRYKMEKMFSAFTGQALEKVQEYTERDSFLSVSEALELGLIDGVL 270


>gi|156618848|ref|YP_001430129.1| ATP-dependent Clp protease proteolytic subunit [Cuscuta reflexa]
 gi|160380550|sp|A7M988|CLPP_CUSRE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|156556033|emb|CAM98416.1| ATP-dependent Clp protease proteolytic subunit [Cuscuta reflexa]
          Length = 201

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 78/190 (41%), Positives = 119/190 (62%), Gaps = 5/190 (2%)

Query: 19  VPMVVEQTNRGERS---YDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           VP V  Q  R +RS    DIY+RL +ER +F+   +E  +A  +    ++L  ++  K+I
Sbjct: 5   VPRVRFQYRR-DRSRVWIDIYNRLYRERCLFLAHVVESQIANQLVGLFIYLGVQDETKDI 63

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            L+INSPGG + +G AIYDTMQF++P I T C+G AASMGS LL  G    R A P+AR+
Sbjct: 64  FLFINSPGGGIISGFAIYDTMQFVRPDIQTICVGLAASMGSFLLVGGAITKRLAFPHARV 123

Query: 136 LLHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           ++HQP S  F  Q  +    A++++K++  L ++YV+  GK    + + ++RD  +SA+E
Sbjct: 124 MIHQPMSAFFETQTVEAILEAEELLKLRESLAKVYVQRTGKPDWVIAEDMERDVFLSATE 183

Query: 195 ACDWGVVDKV 204
           A  +G+VD V
Sbjct: 184 AQSYGIVDVV 193


>gi|270285501|ref|ZP_06194895.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia muridarum
           Nigg]
 gi|270289512|ref|ZP_06195814.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia muridarum
           Weiss]
 gi|301336898|ref|ZP_07225100.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia muridarum
           MopnTet14]
 gi|14194529|sp|Q9PJW1|CLPP1_CHLMU RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
          Length = 192

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 77/181 (42%), Positives = 117/181 (64%), Gaps = 3/181 (1%)

Query: 34  DIYSR-LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI 92
           DI  R LL  R +F +  + +  A     +L +LE  +P + I   INSPGG V AG A+
Sbjct: 12  DIIDRKLLDSRRIFFSEPVTEKSAAEAIKKLWYLELTSPGQPIVFVINSPGGSVDAGFAV 71

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS--GGFSGQASD 150
           +D ++ I  P++T   G AASMGS+L      G RFA P+ARI++HQPS  G  +GQA+D
Sbjct: 72  WDQIKMISSPVTTVVTGLAASMGSVLSLCAAPGRRFATPHARIMIHQPSIGGTITGQATD 131

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           ++ HA++I+K K R+ ++YV+  G++ E +EK +DRD  MSA+EA ++G++D +L S  D
Sbjct: 132 LDIHAREILKTKARIIDVYVEATGQSREVIEKAIDRDMWMSANEAMEFGLLDGILFSFND 191

Query: 211 I 211
           +
Sbjct: 192 L 192


>gi|166235575|gb|ABY85489.1| ATP-dependent protease proteolytic subunit [Silene samia]
          Length = 196

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 69/172 (40%), Positives = 112/172 (65%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  +++  ++  +   +++L  E+  K++ L+INSPGG V  G+AI 
Sbjct: 22  DVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIX 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF++P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F   Q  +  
Sbjct: 82  DTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  L  +YV+  GK    V + ++RD  MSA+EA   G+VD V
Sbjct: 142 LEAEELLKLRETLTRVYVQRTGKPIWVVSEDMERDVFMSAAEAQAHGIVDLV 193


>gi|60117170|ref|YP_209504.1| ATP-dependent Clp protease proteolytic subunit [Huperzia lucidula]
 gi|68052074|sp|Q5SD28|CLPP_HUPLU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|50659978|gb|AAT80700.1| ATP-dependent protease [Huperzia lucidula]
          Length = 209

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 69/172 (40%), Positives = 113/172 (65%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  Q++D +A  +   +++   E+  +++ LY+NSPGG V AG++IY
Sbjct: 22  DVYNRLFRERLLFLGQQVDDELANQLICIMIYPNGEDDSRDMYLYVNSPGGAVFAGISIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           D MQF+ P + T C+G AASMGS +L+ GE   R ALP+AR+++HQP S  + GQ  +  
Sbjct: 82  DAMQFVVPDVQTICIGLAASMGSFVLAGGEITKRIALPHARVMIHQPASSYYEGQVGECI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++KI+  + ++Y +  GK    V +  +RD   SA EA  +GV+D V
Sbjct: 142 MEAEEVLKIRDCITKVYAQRTGKPLWVVSEDTERDVFTSAEEAKVYGVIDPV 193


>gi|123966707|ref|YP_001011788.1| ATP-dependent Clp protease-like protein [Prochlorococcus marinus
           str. MIT 9515]
 gi|123201073|gb|ABM72681.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9515]
          Length = 220

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 81/193 (41%), Positives = 117/193 (60%), Gaps = 19/193 (9%)

Query: 41  KERIVFV----------TGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG------- 83
           KERIV++            Q+   +  LI AQLL+LE ++P K I  YINS G       
Sbjct: 27  KERIVYLGLPLFSDDDAKRQLGMDVTELIIAQLLYLEFDDPDKPIYFYINSTGTSWYTGD 86

Query: 84  --GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
             G  T   AI DT+ +IKPPI T C+GQA    +++LS+G KG R ALP+A I+LHQP 
Sbjct: 87  AVGFETEAFAICDTINYIKPPIHTICIGQAMGTAAVILSSGTKGHRAALPHASIVLHQPI 146

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            G  GQA+DI+  A++++K K+ + EI  +N GK+ E++ K  DR   ++  EA D+GV+
Sbjct: 147 SGARGQATDIQIRAEEVLKNKKSMLEILSRNTGKSIEDLSKDSDRMSYLNPQEALDYGVI 206

Query: 202 DKVLMSRIDIEEK 214
           D++L S+ D+  K
Sbjct: 207 DRILTSQKDLPNK 219


>gi|218439261|ref|YP_002377590.1| ATP-dependent Clp protease-like protein [Cyanothece sp. PCC 7424]
 gi|218171989|gb|ACK70722.1| Endopeptidase Clp [Cyanothece sp. PCC 7424]
          Length = 228

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 81/194 (41%), Positives = 119/194 (61%), Gaps = 19/194 (9%)

Query: 34  DIYSRLLKERIVF----------VTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           D+ S LLKERIV+          +  Q+   +  LI AQLL+L+ ++P K I  YINS G
Sbjct: 24  DLESLLLKERIVYLGMPLFSSDEIKQQVGIDVTQLIIAQLLYLQFDDPDKPIYFYINSTG 83

Query: 84  ---------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
                    G  T   AI DT+ +IKPP+ T C+GQA    +++LSAG KG R +LP+A 
Sbjct: 84  TSWYTGDAIGFETEAFAICDTINYIKPPVHTICIGQAMGTAAMILSAGTKGCRASLPHAT 143

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I+L+Q   G  GQA+DI+  A++++  KR + EI+ KN G+T E++ K LDR   M+  +
Sbjct: 144 IVLNQNRTGAQGQATDIQIRAKEVLANKRTMLEIFAKNTGQTVEKLAKDLDRTFYMTPEQ 203

Query: 195 ACDWGVVDKVLMSR 208
           A ++G++D+VL SR
Sbjct: 204 AKEYGLIDRVLESR 217


>gi|18860336|ref|NP_569653.1| ATP-dependent Clp protease proteolytic subunit [Psilotum nudum]
 gi|22653694|sp|Q8WHZ7|CLPP_PSINU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|18389489|dbj|BAB84241.1| ATP-dependent protease [Psilotum nudum]
          Length = 198

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 68/174 (39%), Positives = 114/174 (65%), Gaps = 1/174 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  Q++D +A  +   +++L  E+  +++  YINSPGG V  G+++Y
Sbjct: 22  DVYNRLYRERLLFLGQQVDDEIANQLIGIMMYLNGEDENRDMYSYINSPGGAVLPGISVY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           D MQF+ P + T CMG AASMGS +L+ GE   R ALP+AR+++HQP S  + GQA +  
Sbjct: 82  DAMQFVVPDVHTICMGLAASMGSFILTGGEITKRIALPHARVMIHQPASSYYDGQAGECI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             A++I+K++  +  +Y +   K    + + ++RD  MSA EA  +G+VD + +
Sbjct: 142 MEAEEILKLRDCITRVYAQRTEKPLWVISEDMERDIFMSAKEARAYGIVDLIAL 195


>gi|262400762|gb|ACY66251.1| ATP-dependent Clp protease proteolytic subunit [Brassica napus]
          Length = 196

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/178 (39%), Positives = 116/178 (65%), Gaps = 2/178 (1%)

Query: 29  GERSY-DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVT 87
           G+ S+ DI +RL +ER+ F+  +++  ++  + + +++L  E   K++ L+INSPGG V 
Sbjct: 16  GDTSWVDIINRLYRERLFFLGQEVDTEISNQLISLMIYLSIEKDTKDLYLFINSPGGWVI 75

Query: 88  AGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SG 146
           +GMAIYDTMQF++P + T CMG AAS+ S +L  GE   R A P+AR+++HQP+  F   
Sbjct: 76  SGMAIYDTMQFVRPDVQTICMGLAASIASFILVGGEITKRIAFPHARVMIHQPASSFYEA 135

Query: 147 QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           Q  ++   A++++K++  +  +YV+  GK    V + ++RD  MSA+EA   G+VD V
Sbjct: 136 QTGEVILEAEELLKLRETITRVYVQRTGKPIWVVSEDMERDVFMSATEAQAHGIVDLV 193


>gi|261415968|ref|YP_003249651.1| Endopeptidase Clp [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|261372424|gb|ACX75169.1| Endopeptidase Clp [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|302327177|gb|ADL26378.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 193

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 75/168 (44%), Positives = 115/168 (68%), Gaps = 3/168 (1%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           L  +R +F+ G ++D  A  I  QLL+L++ N  ++I  +INSPGGV+++G+AIYD M  
Sbjct: 23  LASKRRIFLWGGVDDESAERIVKQLLYLDSLN-HEDIIFFINSPGGVISSGLAIYDCMNA 81

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP--SGGFSGQASDIERHAQ 156
           I+  + T C GQAASMG++LL+AG KG R A PNARI++HQP   G     ASDI+  A+
Sbjct: 82  IQSDVVTVCCGQAASMGAVLLTAGAKGKRCAWPNARIMIHQPLIHGEIVAPASDIQIQAE 141

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           ++++I+    +I  +  G T E++++  +RD+ MSA EA ++G+VDKV
Sbjct: 142 EMLRIRGITGKILAETSGHTIEQIDRDTERDNFMSAEEARNYGLVDKV 189


>gi|87125531|ref|ZP_01081376.1| ATP-dependent Clp protease proteolytic subunit 4 [Synechococcus sp.
           RS9917]
 gi|86166831|gb|EAQ68093.1| ATP-dependent Clp protease proteolytic subunit 4 [Synechococcus sp.
           RS9917]
          Length = 211

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 80/194 (41%), Positives = 119/194 (61%), Gaps = 19/194 (9%)

Query: 34  DIYSRLLKERIVFV----------TGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           D+ S +LKERIV++            Q+   +  LI AQLL+LE +NP K I  YINS G
Sbjct: 7   DLPSLMLKERIVYLGLPLFSDDDTKRQLGLDVTELIIAQLLYLEFDNPDKPIYFYINSTG 66

Query: 84  ---------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
                    G  T   AI DT++++KPP+ T C+GQA    +++LSAG KG R ALP+A 
Sbjct: 67  TSWYTGDAIGFETEAFAICDTLRYVKPPVHTICIGQAMGTAAVILSAGTKGQRAALPHAS 126

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I+LHQP  G  GQA+DI+  A++++  KR + EI  +N G++ E++ K  DR   ++  +
Sbjct: 127 IVLHQPRSGARGQATDIQIRAKEVLHNKRAMLEILSENTGRSVEQLAKDSDRMSYLTPEQ 186

Query: 195 ACDWGVVDKVLMSR 208
           A ++G++D+VL SR
Sbjct: 187 AVEYGLIDRVLGSR 200


>gi|139389121|ref|YP_001123839.1| ATP-dependent Clp protease proteolytic subunit [Nasturtium
           officinale]
 gi|160380558|sp|A4QLV8|CLPP_NASOF RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|134287044|dbj|BAF50663.1| ATP-dependent protease subunit [Nasturtium officinale]
          Length = 196

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 69/178 (38%), Positives = 115/178 (64%), Gaps = 2/178 (1%)

Query: 29  GERSY-DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVT 87
           G+ S+ DIY+RL +ER+ F+  +++  ++  + + +++L  E   K++ L+INSPGG V 
Sbjct: 16  GDTSWVDIYNRLYRERLFFLGQEVDTEISNQLISLMIYLSIEKDTKDLYLFINSPGGWVI 75

Query: 88  AGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SG 146
           +GMA+YDTMQF++P + T CMG AAS+ S +L  G    R A P+AR+++HQP+  F   
Sbjct: 76  SGMAVYDTMQFVRPDVQTICMGLAASIASFILVGGAITKRIAFPHARVMIHQPASSFYEA 135

Query: 147 QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           Q  +    A++++K++  +  +YV+  GK    V + ++RD  MSA+EA   G+VD V
Sbjct: 136 QTGEFILEAEELLKVRETITRVYVQRTGKPIWVVSEDMERDVFMSATEAQAHGIVDLV 193


>gi|139388119|ref|YP_001123311.1| ATP-dependent protease subunit [Barbarea verna]
 gi|139389443|ref|YP_001123140.1| ATP-dependent Clp protease proteolytic subunit [Olimarabidopsis
           pumila]
 gi|139389826|ref|YP_001123487.1| ATP-dependent Clp protease proteolytic subunit [Crucihimalaya
           wallichii]
 gi|160380544|sp|A4QKD0|CLPP_BARVE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|160380548|sp|A4QKV6|CLPP_CRUWA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|160380560|sp|A4QJV6|CLPP_OLIPU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|134286337|dbj|BAF49964.1| ATP-dependent protease subunit [Olimarabidopsis pumila]
 gi|134286510|dbj|BAF50135.1| ATP-dependent protease subunit [Barbarea verna]
 gi|134286688|dbj|BAF50311.1| ATP-dependent protease subunit [Crucihimalaya wallichii]
          Length = 196

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/178 (39%), Positives = 115/178 (64%), Gaps = 2/178 (1%)

Query: 29  GERSY-DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVT 87
           G+ S+ DIY+RL +ER+ F+  +++  ++  + + +++L  E   K++ L+INSPGG V 
Sbjct: 16  GDTSWVDIYNRLYRERLFFLGQEVDTEISNQLISLMIYLSIEKDTKDLYLFINSPGGWVI 75

Query: 88  AGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SG 146
           +GMAIYDTMQF++P + T CMG AAS+ S +L  G    R A P+AR+++HQP+  F   
Sbjct: 76  SGMAIYDTMQFVRPDVQTICMGLAASIASFILVGGAITKRIAFPHARVMIHQPASSFYEA 135

Query: 147 QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           Q  +    A++++K++  +  +YV+  GK    V + ++RD  MSA+EA   G+VD V
Sbjct: 136 QTGEFILEAEELLKLRETITRVYVQRTGKPIWVVSEDMERDVFMSATEAQAHGIVDLV 193


>gi|75907529|ref|YP_321825.1| ATP-dependent Clp protease-like protein [Anabaena variabilis ATCC
           29413]
 gi|75701254|gb|ABA20930.1| Peptidase S14, ClpP [Anabaena variabilis ATCC 29413]
          Length = 220

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 74/174 (42%), Positives = 111/174 (63%), Gaps = 9/174 (5%)

Query: 41  KERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------GVVTAGMA 91
           KERIV++   +   +  LI AQLL+L++++P K I +YINS G         G  T   A
Sbjct: 32  KERIVYLGMPLVPAVTELIVAQLLYLQSDDPDKPIKIYINSTGTSGYSGEPIGFETEAFA 91

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYDTM++IKPPI T C+G A  M ++LLSAG KG R +LPNA I+LHQP     GQA+DI
Sbjct: 92  IYDTMKYIKPPIHTICIGSAMGMAAMLLSAGTKGCRASLPNASIILHQPKSYAQGQATDI 151

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           +  A++++  K  + +I+ +  G+  E++ K +DR   M+  +A D+G++D+V 
Sbjct: 152 QIRAREVLVNKGSMVDIFARTTGQAPEKITKDMDRLLYMTPYQAKDYGLIDRVF 205


>gi|169142814|ref|YP_001687238.1| ATP-dependent Clp protease proteolytic subunit [Aneura mirabilis]
 gi|153973840|gb|ABS54500.1| clp protease proteolytic subunit [Aneura mirabilis]
          Length = 203

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/169 (41%), Positives = 113/169 (66%), Gaps = 1/169 (0%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           +RL +ER++F+  Q++D +A  +   +++L  E+  K++ LYINSPGG V AG+++YD M
Sbjct: 24  NRLYRERLLFLGQQVDDEIANQLIGIMMYLNGEDETKDMYLYINSPGGAVLAGISVYDAM 83

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIERHA 155
           QF+ P + T CMG AASMGS +L+ GE   R ALP+AR+++HQP S  + GQA +    A
Sbjct: 84  QFVVPDVHTICMGLAASMGSFILTGGEITKRIALPHARVMIHQPASSYYDGQAGECIMEA 143

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           ++++K++  + ++YV+  GK    + + ++RD   SA EA   G+VD V
Sbjct: 144 EEVLKLRDCITKVYVQRTGKPLWIISEDMERDVFSSAEEAKIHGIVDSV 192


>gi|254293120|ref|YP_003059143.1| endopeptidase Clp [Hirschia baltica ATCC 49814]
 gi|254041651|gb|ACT58446.1| Endopeptidase Clp [Hirschia baltica ATCC 49814]
          Length = 198

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 74/183 (40%), Positives = 116/183 (63%), Gaps = 1/183 (0%)

Query: 29  GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTA 88
           GE +  +   L K R + +TG I+D+ A  +C +LL L +E+    I L ++SPGG V +
Sbjct: 15  GEPNAFLEEALFKARTILLTGGIDDNQARRVCERLLALSSESADP-ILLVLSSPGGHVES 73

Query: 89  GMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQA 148
           G  I+D ++F+  P+     G  AS G+L+ +A +K  RFA PN R LLH+P GG  GQA
Sbjct: 74  GDMIHDMIKFVPAPVKVLGTGWVASAGALIYAAAQKENRFASPNTRFLLHEPRGGVGGQA 133

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           SD+E  A++I+K++ RLN I+ +  GK  +++++  DRD  MSA EA  +G+V K++ S+
Sbjct: 134 SDVEIQAREIIKMRERLNNIFAEATGKPLKKIQEDTDRDFWMSAEEAVKYGLVGKIVTSQ 193

Query: 209 IDI 211
            +I
Sbjct: 194 KEI 196


>gi|33861869|ref|NP_893430.1| ATP-dependent Clp protease-like protein [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
 gi|33640237|emb|CAE19772.1| Clp protease proteolytic subunit [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 220

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 81/190 (42%), Positives = 116/190 (61%), Gaps = 19/190 (10%)

Query: 41  KERIVFV----------TGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG------- 83
           KERIV++            Q+   +  LI AQLL+LE ++P K I  YINS G       
Sbjct: 27  KERIVYLGLPLFSDDDAKRQLGMDVTELIIAQLLYLEFDDPDKPIYFYINSTGTSWYTGD 86

Query: 84  --GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
             G  T   AI DT+ +IKPPI T C+GQA    +++LS+G KG R ALP+A I+LHQP 
Sbjct: 87  AVGFETEAFAICDTINYIKPPIHTICIGQAMGTAAVILSSGTKGHRAALPHASIVLHQPI 146

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            G  GQA+DI+  A++++K K+ + EI  +N GK+ EE+ K  DR   ++  EA D+GV+
Sbjct: 147 SGARGQATDIQIRAEEVLKNKKSMLEILSRNTGKSIEELSKDSDRMSYLNPQEALDYGVI 206

Query: 202 DKVLMSRIDI 211
           D++L S+ D+
Sbjct: 207 DRILTSQKDL 216


>gi|139389289|ref|YP_001123055.1| ATP-dependent protease subunit [Aethionema grandiflorum]
 gi|139390373|ref|YP_001122971.1| ATP-dependent protease subunit [Aethionema cordifolium]
 gi|160380540|sp|A4QJE0|CLPP_AETCO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|160380541|sp|A4QJM4|CLPP_AETGR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|134286166|dbj|BAF49795.1| ATP-dependent protease subunit [Aethionema cordifolium]
 gi|134286251|dbj|BAF49879.1| ATP-dependent protease subunit [Aethionema grandiflorum]
          Length = 196

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/178 (39%), Positives = 115/178 (64%), Gaps = 2/178 (1%)

Query: 29  GERSY-DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVT 87
           G+ S+ DIY+RL +ER+ F+  +++  ++  + + +++L  E   K++ L+INSPGG V 
Sbjct: 16  GDTSWVDIYNRLYRERLFFLGQEVDTDISNQLISLMIYLSIEKDTKDLYLFINSPGGWVI 75

Query: 88  AGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SG 146
           +GMAIYDTMQF++P + T CMG AAS+ S +L  G    R A P+AR+++HQP+  F   
Sbjct: 76  SGMAIYDTMQFVRPDVQTICMGLAASIASFILVGGAITKRIAFPHARVMIHQPASSFYEA 135

Query: 147 QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           Q  +    A++++K++  +  +YV+  GK    V + ++RD  MSA+EA   G+VD V
Sbjct: 136 QTGEFILEAEELLKLRETITRVYVQRTGKPIWVVSEDMERDVFMSATEAQAHGIVDLV 193


>gi|254501110|ref|ZP_05113261.1| Clp protease [Labrenzia alexandrii DFL-11]
 gi|222437181|gb|EEE43860.1| Clp protease [Labrenzia alexandrii DFL-11]
          Length = 204

 Score =  149 bits (376), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 75/184 (40%), Positives = 112/184 (60%), Gaps = 1/184 (0%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           E  ++ + S  +   L + R V +TG +   MA  +CA+LL L A+     I++ ++SPG
Sbjct: 17  EDKSKAQPSIQVDKHLFEARTVLITGPVTQDMARDVCARLLAL-AQVSNDPITVIVSSPG 75

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           G V +G  I+D ++FI P +    MG  AS G+L+  +  K +RF  PN R LLHQPSGG
Sbjct: 76  GHVESGDMIHDAIKFISPEVRILGMGWVASAGALIYVSVPKELRFCTPNTRFLLHQPSGG 135

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
             G A+DIE  A++I+K++ RLN+I+    G+  E +EK  DRD+ MS  E  D+G+V K
Sbjct: 136 AGGMATDIEIQAKEIIKMRDRLNKIFADATGQPIERIEKDTDRDYWMSPEEGIDYGLVGK 195

Query: 204 VLMS 207
           V+ S
Sbjct: 196 VVTS 199


>gi|290489468|gb|ADD31118.1| clp protease proteolytic subunit protein [Liquidambar styraciflua]
          Length = 196

 Score =  149 bits (376), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 68/172 (39%), Positives = 112/172 (65%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  +I   ++  +   +++L  E+  K++ L+INSPGG +  G+AIY
Sbjct: 22  DVYNRLYRERLLFLGQEINSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWLIPGVAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           DTMQF++P + T CMG AASMGS +L  G+   R A P+AR+++HQP S  F  Q  +  
Sbjct: 82  DTMQFVRPDVHTICMGLAASMGSFILVGGKITKRIAFPHARVMIHQPGSSYFEAQTGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  +  +Y +  GK +  V + ++RD  MSA+EA   G+VD V
Sbjct: 142 LEAEELLKLRETITRVYAQRTGKPFWVVSEDMERDVFMSATEAQAHGIVDLV 193


>gi|306486010|gb|ADM92653.1| clp protease proteolytic subunit protein [Franklinia alatamaha]
          Length = 197

 Score =  149 bits (376), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 68/169 (40%), Positives = 111/169 (65%), Gaps = 1/169 (0%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           +RL +ER++F+  +++  ++  +   +++L  E+  K++ L+INSPGG V  G+AIYDTM
Sbjct: 26  NRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTM 85

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIERHA 155
           QF++P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F   Q  +    A
Sbjct: 86  QFVQPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFILEA 145

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           ++++K++  L  +YV+  GK    V + ++RD  MSA+EA  +G+VD V
Sbjct: 146 EELLKLRETLTRVYVQRTGKPLWVVSEDMERDVFMSATEAQAYGIVDLV 194


>gi|124302931|ref|YP_001023726.1| ATP-dependent Clp protease proteolytic subunit [Angiopteris evecta]
 gi|160380542|sp|A2T358|CLPP_ANGEV RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|110628329|gb|ABG79625.1| clp protease proteolytic subunit [Angiopteris evecta]
          Length = 197

 Score =  149 bits (376), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 68/171 (39%), Positives = 115/171 (67%), Gaps = 1/171 (0%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           +RL +ER++F+  Q++D +A  +   +++L  E+  +++ LYINSPGG V  G+++YD M
Sbjct: 24  NRLYRERLLFLGQQVDDEIANQLIGIMMYLNGEDETQDMYLYINSPGGAVLPGISVYDAM 83

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIERHA 155
           QF+ P + T CMG AASMGS +L+ GE   R ALP+AR+++HQP S  + GQA +    A
Sbjct: 84  QFVVPDVHTICMGLAASMGSSILTGGEITKRIALPHARVMIHQPASSYYDGQAGECIMEA 143

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           ++++K++  + ++YV+  GK    + + ++RD  MSA EA  +G+VD + +
Sbjct: 144 EEVLKLRDCITKVYVQRTGKPLWVISEDMERDVFMSAEEAKAYGIVDLIAL 194


>gi|313836728|gb|EFS74442.1| Clp protease [Propionibacterium acnes HL037PA2]
 gi|314929866|gb|EFS93697.1| Clp protease [Propionibacterium acnes HL044PA1]
 gi|314972293|gb|EFT16390.1| Clp protease [Propionibacterium acnes HL037PA3]
 gi|328907723|gb|EGG27487.1| ATP-dependent Clp protease proteolytic subunit 2 [Propionibacterium
           sp. P08]
          Length = 244

 Score =  149 bits (376), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 77/191 (40%), Positives = 128/191 (67%), Gaps = 2/191 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P   E+T+ G R  D Y++L ++RI+F+   + D +A  + AQLL L++ +  ++IS+Y
Sbjct: 53  IPQWEERTSYGVRRVDPYTKLFEDRIIFLGTPVTDDIANAVMAQLLCLQSMDADRQISMY 112

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TA  AIYDTM +++P + T C+G AAS  ++LL+AG KG R +LPN+ +L+H
Sbjct: 113 INSPGGSFTAMTAIYDTMNYVRPNVQTICLGMAASAAAVLLAAGAKGQRLSLPNSTVLIH 172

Query: 139 QPSGGFS--GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           QP+ G +  GQA+DIE    +I +I++ +  +     G++ E++ K +DRD  ++A  A 
Sbjct: 173 QPAMGQATYGQATDIEILDDEIQRIRKLMENMLATATGQSVEQISKDIDRDKYLTAQGAK 232

Query: 197 DWGVVDKVLMS 207
           ++G++D +L S
Sbjct: 233 EYGLIDDILTS 243


>gi|114804289|ref|YP_762286.1| clp protease proteolytic subunit [Morus indica]
 gi|122166780|sp|Q09WZ2|CLPP_MORIN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|78100341|gb|ABB20982.1| clp protease proteolytic subunit [Morus indica]
          Length = 196

 Score =  149 bits (376), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 67/172 (38%), Positives = 112/172 (65%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+ +RL +ER++F+  +++  ++  +   ++FL  E+  K++ L+INSPGG V  G+ IY
Sbjct: 22  DVINRLYRERLLFLGQEVDSEISNQLIGLMVFLSIEDDTKDLYLFINSPGGWVIPGLGIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF++P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F   Q  +  
Sbjct: 82  DTMQFVQPDVQTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  +  +YV+  GK+   + + ++RD  MSA+EA   G+VD V
Sbjct: 142 LEAEELLKLRETITRVYVQRTGKSLWVISEDMERDVFMSATEAQAHGLVDLV 193


>gi|7525058|ref|NP_051083.1| ATP-dependent Clp protease proteolytic subunit [Arabidopsis
           thaliana]
 gi|5360576|dbj|BAA82063.1| pClpP [Arabidopsis thaliana]
 gi|5881719|dbj|BAA84410.1| ATP-dependent protease subunit [Arabidopsis thaliana]
          Length = 196

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 69/178 (38%), Positives = 115/178 (64%), Gaps = 2/178 (1%)

Query: 29  GERSY-DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVT 87
           G+ S+ DIY+RL +ER+ F+  +++  ++  + + +++L  E   K++ L+INSPGG V 
Sbjct: 16  GDTSWVDIYNRLYRERLFFLGQEVDTEISNQLISLMIYLSIEKDTKDLYLFINSPGGWVI 75

Query: 88  AGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SG 146
           +GMAIYDTMQF++P + T CMG AAS+ S +L  G    R A P+AR+++HQP+  F   
Sbjct: 76  SGMAIYDTMQFVRPDVQTICMGLAASIASFILVGGAITKRIAFPHARVMIHQPASSFYEA 135

Query: 147 QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           Q  +    A++++K++  +  +YV+  GK    + + ++RD  MSA+EA   G+VD V
Sbjct: 136 QTGEFILEAEELLKLRETITRVYVQRTGKPIWVISEDMERDVFMSATEAQAHGIVDLV 193


>gi|300869049|ref|ZP_07113651.1| ATP-dependent Clp protease-like protein [Oscillatoria sp. PCC 6506]
 gi|300332960|emb|CBN58845.1| ATP-dependent Clp protease-like protein [Oscillatoria sp. PCC 6506]
          Length = 222

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 83/198 (41%), Positives = 125/198 (63%), Gaps = 20/198 (10%)

Query: 34  DIYSRLLKERIV------FVTGQIEDHMAT----LICAQLLFLEAENPQKEISLYINSPG 83
           D+ S LLKERIV      F + +I+ ++      LI AQLL+L+ ++P+K I  YINS G
Sbjct: 17  DLESLLLKERIVYLGMPLFSSDEIKRNVGIDVTELIIAQLLYLQFDDPEKPIYFYINSSG 76

Query: 84  ----------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
                     G+ T   AI DTM +IKPP+ T C+GQA    +++LSAG KG R +LP+A
Sbjct: 77  TSWGDEGYAIGLETEAFAICDTMSYIKPPVHTICIGQAMGTAAMILSAGTKGFRASLPHA 136

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            I+L+Q   G  GQA+DI+  AQ+++  KR + EI+ KN G+T E++ K +DR   ++ +
Sbjct: 137 TIVLNQSKTGGRGQATDIQIMAQEVLLNKRTVVEIFAKNTGQTVEKIAKDMDRMFYLTPA 196

Query: 194 EACDWGVVDKVLMSRIDI 211
           EA ++G++D+VL S  D+
Sbjct: 197 EAKEYGLLDRVLESSKDL 214


>gi|119953533|ref|YP_945742.1| ATP-dependent Clp protease proteolytic subunit [Borrelia turicatae
           91E135]
 gi|119862304|gb|AAX18072.1| ATP-dependent Clp protease proteolytic subunit [Borrelia turicatae
           91E135]
          Length = 196

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 71/174 (40%), Positives = 112/174 (64%)

Query: 40  LKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           LK R + +TG+I    + L   ++LFLEA +  K I +YI+S GG + AG AI++ ++F+
Sbjct: 20  LKSRSIVITGEINKDTSKLFQERILFLEASDCNKPIFVYIDSEGGDIDAGFAIFNMIRFV 79

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
           KP + T  +G  AS G+L+  A +   RF+LP+AR LLHQP  GF G A+DIE +  ++ 
Sbjct: 80  KPKVFTIGVGLVASAGALIFLAADSKSRFSLPHARYLLHQPLSGFKGVATDIEIYTNELN 139

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
           K+K  LN+I  K  G+  ++VEK  DRD  + +  A  +G+V K++ +R+++EE
Sbjct: 140 KVKSELNDIIAKETGQELDKVEKDTDRDFWLGSESAMKYGLVFKIVTTRLELEE 193


>gi|313816691|gb|EFS54405.1| Clp protease [Propionibacterium acnes HL059PA1]
          Length = 244

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 78/191 (40%), Positives = 127/191 (66%), Gaps = 2/191 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P   E+T+ G R  D Y++L ++RI+F+   + D +A  + AQLL L++ +   +IS+Y
Sbjct: 53  IPQWEERTSYGVRRVDPYTKLFEDRIIFLGTPVTDDIANAVMAQLLCLQSMDADHQISMY 112

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TA  AIYDTM +++P I T C+G AAS  ++LL+AG KG R +LPN+ +L+H
Sbjct: 113 INSPGGSFTAMTAIYDTMNYVRPDIQTICLGMAASAAAVLLAAGAKGQRLSLPNSTVLIH 172

Query: 139 QPSGGFS--GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           QP+ G +  GQA+DIE    +I +I++ +  +     G++ E++ K +DRD  ++A  A 
Sbjct: 173 QPAMGQATYGQATDIEILDDEIQRIRKLMENMLATATGQSVEQISKDIDRDKYLTAQGAK 232

Query: 197 DWGVVDKVLMS 207
           ++G++D +L S
Sbjct: 233 EYGLIDDILTS 243


>gi|114329772|ref|YP_740590.1| clp protease proteolytic subunit [Platanus occidentalis]
 gi|122166011|sp|Q09G21|CLPP_PLAOC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|114054410|gb|ABI49804.1| clp protease proteolytic subunit [Platanus occidentalis]
          Length = 202

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 68/172 (39%), Positives = 111/172 (64%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  +++  ++  +   +++L  E+  +++ L+INSPGG V  G+AIY
Sbjct: 22  DVYNRLHRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTRDLYLFINSPGGWVIPGIAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF+ P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F   Q  +  
Sbjct: 82  DTMQFVPPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  L  +YV+  G     V + ++RD  MSA+EA   G+VD V
Sbjct: 142 LEAEELLKLRETLTRVYVQRTGNPLWVVSEDMERDVFMSATEAQAHGIVDLV 193


>gi|255636441|gb|ACU18559.1| unknown [Glycine max]
          Length = 273

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 68/172 (39%), Positives = 108/172 (62%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+ S L + RI+F+   +   +A  + +QL+ L   +   +I +YIN PGG   + +AIY
Sbjct: 98  DLSSVLFRNRIIFIGQPVNSQVAQRVISQLVTLATIDENADILVYINCPGGSTYSVLAIY 157

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M +IKP + T C G AAS G+LLL+ GEKGMR+A+PNARI++HQP  G  G   D+ R
Sbjct: 158 DCMSWIKPKVGTVCFGVAASQGALLLAGGEKGMRYAMPNARIMIHQPQSGCGGHVEDVRR 217

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
              + V+ + +++++Y    G+  E+V++  +RD  +S  EA ++G +D VL
Sbjct: 218 QVNEAVQSRHKIDKMYSVFTGQPLEKVQQYTERDRFLSVFEALEFGFIDGVL 269


>gi|139388935|ref|YP_001123662.1| ATP-dependent Clp protease proteolytic subunit [Lepidium
           virginicum]
 gi|160380556|sp|A4QLD1|CLPP_LEPVR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|134286865|dbj|BAF50486.1| ATP-dependent protease subunit [Lepidium virginicum]
          Length = 196

 Score =  149 bits (375), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 70/178 (39%), Positives = 114/178 (64%), Gaps = 2/178 (1%)

Query: 29  GERSY-DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVT 87
           G+ S+ DIY+RL +ER+ F+   ++  ++  + + +++L  E   K++ L+INSPGG V 
Sbjct: 16  GDTSWVDIYNRLYRERLFFLGQDVDTEISNQLISLMIYLSIEKDTKDLYLFINSPGGWVI 75

Query: 88  AGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SG 146
           +GMAIYDTMQF++P + T CMG AAS+ S +L  G    R A P+AR+++HQP+  F   
Sbjct: 76  SGMAIYDTMQFVRPDVQTICMGLAASIASFILVGGAITKRIAFPHARVMIHQPASSFYEA 135

Query: 147 QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           Q  +    A++++K++  +  +YV+  GK    V + ++RD  MSA+EA   G+VD V
Sbjct: 136 QTGEFILEAEELLKLRETITRVYVQRTGKPIWVVSEDMERDVFMSATEAQAHGIVDLV 193


>gi|295311752|ref|YP_003587490.1| Clp protease proteolytic subunit [Oncidium Gower Ramsey]
 gi|281188266|gb|ACT83132.1| Clp protease proteolytic subunit [Oncidium Gower Ramsey]
          Length = 203

 Score =  149 bits (375), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 67/172 (38%), Positives = 113/172 (65%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  +++  ++  +   +++L  E+  +++ L+INSPGG V  G+AIY
Sbjct: 22  DVYNRLHRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTRDLYLFINSPGGWVIPGIAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF+ P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F   QA +  
Sbjct: 82  DTMQFVSPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQAGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  L ++YV+  G     + + ++RD  MSA+EA   G+V+ V
Sbjct: 142 LEAEELLKLRETLTKVYVQRTGNPLWVISEDMERDVFMSATEAQAHGIVNLV 193


>gi|290489444|gb|ADD31106.1| clp protease proteolytic subunit protein [Meliosma aff. cuneifolia
           Moore 333]
          Length = 202

 Score =  149 bits (375), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 69/172 (40%), Positives = 110/172 (63%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+   +E  ++  +   +++L  E+  +++ L+INSPGG V  G+AIY
Sbjct: 22  DVYNRLHRERLLFLGQGVESEISNQLIGLMVYLSIEDDTRDLYLFINSPGGWVIPGIAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF+ P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F   Q  +  
Sbjct: 82  DTMQFVPPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  L  +YV+  G     V + ++RD  MSA+EA   G+VD V
Sbjct: 142 LEAEELLKLRETLTRVYVQRTGNPLWVVSEDMERDVFMSATEAQAHGIVDLV 193


>gi|229822177|ref|YP_002883703.1| Endopeptidase Clp [Beutenbergia cavernae DSM 12333]
 gi|229568090|gb|ACQ81941.1| Endopeptidase Clp [Beutenbergia cavernae DSM 12333]
          Length = 205

 Score =  148 bits (374), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 78/185 (42%), Positives = 111/185 (60%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           M  EQT       ++ SRLL +RI+ +   ++D +   +CAQLL L AE+P+ +ISL+IN
Sbjct: 1   MPREQTPTRPLDDELASRLLHQRIIVLGTGLDDVVGNRLCAQLLLLSAEDPRADISLWIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGG V A +AI+D M+ I   +ST  MG A S G  LLSAG  G RFAL +AR+LLHQ 
Sbjct: 61  SPGGSVPAMLAIHDVMRLIPNDVSTLAMGMAYSAGQFLLSAGTPGKRFALEHARVLLHQG 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
           S G  G A DIE  A D+   +  +  +   + G+  + V +   RD   +A EA ++G 
Sbjct: 121 SAGIGGTALDIEVQADDLRHTRDTVLGLIAAHTGQPIDRVAEDSQRDRYFTADEALEYGF 180

Query: 201 VDKVL 205
           +D+V+
Sbjct: 181 IDRVV 185


>gi|228017699|gb|ACP52511.1| ATP-dependent Clp protease proteolytic subunit [Pinus pinaster]
          Length = 202

 Score =  148 bits (374), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 71/172 (41%), Positives = 110/172 (63%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+   I   +A  +   +++L AE+  KEI  +IN PGG V  G+A++
Sbjct: 22  DLYNRLYRERLLFLAQDINGEIANQLMGLMVYLSAEDANKEIFSFINCPGGSVIPGVALF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           D MQ I P ++T CMG AASMGS +L  GE   R ALP+ARI++HQP S  + G A+D  
Sbjct: 82  DMMQAIVPDVNTICMGVAASMGSFILIGGEMHQRLALPHARIMIHQPASSYYDGSAADFH 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             ++ +  ++  + E Y+   G+  E +++ L+RD  MSA+EA  +G+VD V
Sbjct: 142 NESKHVTLLREYITECYIDRTGQPEEVIQRDLNRDVFMSATEAKAYGIVDVV 193


>gi|227822887|ref|YP_002826859.1| ATP-dependent Clp protease proteolytic subunit [Sinorhizobium
           fredii NGR234]
 gi|227341888|gb|ACP26106.1| ATP-dependent Clp protease proteolytic subunit 3 [Sinorhizobium
           fredii NGR234]
          Length = 197

 Score =  148 bits (374), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 72/175 (41%), Positives = 111/175 (63%), Gaps = 1/175 (0%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           + L K R +F+ G I   +A  +C+QL+ L A    ++I +++NSPGG V +G +I+D +
Sbjct: 24  ANLFKSRSIFIYGTITQELAQKVCSQLVAL-ASASDEDIRIFVNSPGGHVESGDSIHDMI 82

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQ 156
           +F+KP + T   G  AS G+L+  A  K  R  LPN R LLHQPSGG  G ASDIE  A+
Sbjct: 83  KFVKPKVRTIGTGWVASAGALIFVAPPKEQRLCLPNTRFLLHQPSGGTRGMASDIEIQAR 142

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           +I+K+  RLN+I+ +  G+  E++ K  DRD+ + A EA  +G+V +++ S  +I
Sbjct: 143 EIIKMNERLNKIFSEATGQPVEKIAKDTDRDYWLGADEAKSYGLVSRIVTSVAEI 197


>gi|149390564|ref|YP_001294209.1| clp protease proteolytic subunit [Buxus microphylla]
 gi|160380545|sp|A6MM61|CLPP_BUXMI RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|146762309|gb|ABQ45273.1| clp protease proteolytic subunit [Buxus microphylla]
          Length = 202

 Score =  148 bits (374), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 73/182 (40%), Positives = 113/182 (62%), Gaps = 4/182 (2%)

Query: 27  NRGERS---YDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           N GE      D+Y+RL +ER++F+  +++  ++  +   +++L  E+  K++ L+INSPG
Sbjct: 12  NPGEEDAVWVDVYNRLHRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPG 71

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           G V  G+AIYDTMQF+ P I T CMG AASMGS LL  GE   R A P+AR+++HQP+  
Sbjct: 72  GWVIPGIAIYDTMQFVPPDIHTICMGLAASMGSFLLVGGEITKRLAFPHARVMIHQPASS 131

Query: 144 F-SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
           F   Q  +    A++++K++  +  +YV+  G     V + ++RD  MSA EA   G+VD
Sbjct: 132 FYEAQTGEFILEAEELLKLRETVTRVYVQRTGNPLWVVSEDMERDVFMSAIEAQAHGIVD 191

Query: 203 KV 204
            V
Sbjct: 192 LV 193


>gi|297844024|ref|XP_002889893.1| hypothetical protein ARALYDRAFT_471314 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297335735|gb|EFH66152.1| hypothetical protein ARALYDRAFT_471314 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 271

 Score =  148 bits (374), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 71/204 (34%), Positives = 122/204 (59%), Gaps = 6/204 (2%)

Query: 8   KKDSEDVFLGLV------PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICA 61
           K D++D   G++      P V+          D+ S L + RI+F+   I   +A  + +
Sbjct: 64  KIDNKDPRFGVIEAKKGNPPVMPSVMTPGGPLDLSSVLFRNRIIFIGQPINAQVAQRVIS 123

Query: 62  QLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSA 121
           QL+ L + + + +I +Y+N PGG   + +AIYD M +IKP + T   G AAS G+LLL+ 
Sbjct: 124 QLVTLASIDDKSDILMYLNCPGGSTYSVLAIYDCMSWIKPKVGTVAFGVAASQGALLLAG 183

Query: 122 GEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVE 181
           GEKGMR+A+PN R+++HQP  G  G   D+ R   + ++ +++++ +Y    G+  E+V+
Sbjct: 184 GEKGMRYAMPNTRVMIHQPQTGCGGHVEDVRRQVNEAIEARQKIDRMYAAFTGQPLEKVQ 243

Query: 182 KTLDRDHIMSASEACDWGVVDKVL 205
           +  +RD  +SASEA ++G++D +L
Sbjct: 244 QYTERDRFLSASEALEFGLIDGLL 267


>gi|302770831|ref|XP_002968834.1| hypothetical protein SELMODRAFT_91162 [Selaginella moellendorffii]
 gi|302784736|ref|XP_002974140.1| hypothetical protein SELMODRAFT_100139 [Selaginella moellendorffii]
 gi|300158472|gb|EFJ25095.1| hypothetical protein SELMODRAFT_100139 [Selaginella moellendorffii]
 gi|300163339|gb|EFJ29950.1| hypothetical protein SELMODRAFT_91162 [Selaginella moellendorffii]
          Length = 221

 Score =  148 bits (374), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 75/191 (39%), Positives = 116/191 (60%), Gaps = 1/191 (0%)

Query: 16  LGLVPMVVEQTNRGERSY-DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
           LG+  +    ++ G   Y DI++ L +ERIVF+   I+D +A  + A +L+L++ +  K 
Sbjct: 9   LGVPKVPYRASSEGSWQYVDIWNVLYQERIVFIGQHIDDDLANRVVATMLYLDSVDSSKH 68

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           +  YI+ PGG +T  MAIYDTM  ++  I+T  +G A  +   LL+AGEKGMR A+P AR
Sbjct: 69  LHFYISCPGGSLTPSMAIYDTMGSVRSGIATLALGAAYDIAGFLLAAGEKGMRMAMPLAR 128

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I L  P G   GQA DI+    ++ +++  L E    N G+  +++ K LDR  I SA E
Sbjct: 129 IALQPPEGATRGQADDIQTEVNELGRLRDCLYEQLAINTGQPVDKIHKDLDRMKIFSAQE 188

Query: 195 ACDWGVVDKVL 205
           A D+G++DK++
Sbjct: 189 ALDYGLIDKIV 199


>gi|159185132|ref|NP_355226.2| ATP-dependent Clp protease proteolytic subunit [Agrobacterium
           tumefaciens str. C58]
 gi|159140403|gb|AAK88011.2| ATP-dependent Clp protease, proteolytic subunit [Agrobacterium
           tumefaciens str. C58]
          Length = 193

 Score =  148 bits (374), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 74/172 (43%), Positives = 112/172 (65%), Gaps = 1/172 (0%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           + L K R +F+ G I   +A  +C QL+ L A +   +I +Y+NSPGG V +G +I+D +
Sbjct: 20  ANLFKSRSIFIYGGITQELAQKVCTQLVALAAAS-DDDIRVYVNSPGGHVESGDSIHDMI 78

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQ 156
           +FIKP +     G  AS G+L+  +  K  R  LPN R LLHQPSGG  G ASDIE  A+
Sbjct: 79  KFIKPKVYIIGTGWVASAGALIYVSVPKERRLCLPNTRFLLHQPSGGTRGMASDIEIQAR 138

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           +I+K+ +RL +I+ K  G+T E++ K +DRD+ +SA +A D+G+V K++ S+
Sbjct: 139 EIIKMNQRLIKIFSKATGQTEEKIAKDIDRDYWLSADDAKDYGLVGKIVESQ 190


>gi|222149377|ref|YP_002550334.1| ATP-dependent Clp protease proteolytic subunit [Agrobacterium vitis
           S4]
 gi|221736361|gb|ACM37324.1| ATP-dependent Clp protease proteolytic subunit ClpP [Agrobacterium
           vitis S4]
          Length = 193

 Score =  148 bits (374), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 75/175 (42%), Positives = 113/175 (64%), Gaps = 1/175 (0%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           + L K R +F+ G I   +A  +C QL+ L A +   +I +Y+NSPGG V +G +I+D +
Sbjct: 20  ANLFKSRSIFIYGGITQELAQKVCTQLVALAAAS-DDDIRVYVNSPGGHVESGDSIHDMI 78

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQ 156
           +FIKP +     G  AS G+L+  +  K  R  LPN R LLHQPSGG  G ASDIE  A+
Sbjct: 79  KFIKPKVWIIGTGWVASAGALIYVSVPKEQRLCLPNTRFLLHQPSGGTRGMASDIEIQAR 138

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           +I+K+ +RL +I+ K  G+T E++ K +DRD+ +SA EA  +G+V K++ S+ +I
Sbjct: 139 EIIKMNQRLIKIFSKATGQTEEKIAKDIDRDYWLSAEEAKTYGLVSKIVESQSEI 193


>gi|68052061|sp|Q5QA83|CLPP_ACOGR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|56122453|gb|AAV74350.1| ClpP [Acorus gramineus]
          Length = 202

 Score =  148 bits (374), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 68/172 (39%), Positives = 111/172 (64%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           DIY+RL +ER++F+  +++  ++  +   +++L  E+  ++  L+INSPGG V  G+ +Y
Sbjct: 22  DIYNRLHRERLLFLGQELDSEISNQLVGLMVYLSIEDKTRDFFLFINSPGGWVIPGIGLY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF+ P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F   QA +  
Sbjct: 82  DTMQFVPPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQAGEFV 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  L  +YV+  GK    V + ++RD  +SA+EA   G+VD V
Sbjct: 142 LEAEELLKLRETLTRVYVQRTGKPLWVVSEDMERDVFLSATEAQAHGIVDLV 193


>gi|297621676|ref|YP_003709813.1| ATP-dependent Clp protease proteolytic subunit [Waddlia
           chondrophila WSU 86-1044]
 gi|297376977|gb|ADI38807.1| ATP-dependent Clp protease proteolytic subunit [Waddlia
           chondrophila WSU 86-1044]
          Length = 196

 Score =  148 bits (374), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 71/171 (41%), Positives = 111/171 (64%), Gaps = 2/171 (1%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           +L+ R +F++ Q+++  A  I  +L +LE ++P K I   INSPGG V +G AI+D +Q 
Sbjct: 22  ILEARRLFLSNQVDNETANEIIRKLWYLELKDPGKPILFVINSPGGSVDSGFAIWDQVQM 81

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP--SGGFSGQASDIERHAQ 156
           I  P++T   G AASMGS+L     KG R+  P ARI++HQP   G   GQA+D++  A+
Sbjct: 82  ISSPVTTLVTGLAASMGSVLSLCAAKGKRYVTPQARIMIHQPMIGGVIQGQATDLDIQAR 141

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           +I+K + +L  IY+   GK YE +++ +DRD  MSA EA ++G++D ++ S
Sbjct: 142 EILKTREKLVRIYMDATGKDYETIDRAIDRDTWMSAEEAKEFGLIDAIIDS 192


>gi|75755684|ref|YP_319788.1| ATP-dependent Clp protease proteolytic subunit [Acorus calamus]
 gi|161622334|ref|YP_001586206.1| ATP-dependent Clp protease proteolytic subunit [Acorus americanus]
 gi|122217404|sp|Q3V509|CLPP_ACOCL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|74381734|emb|CAI53819.1| ATP-dependent protease proteolytic subunit [Acorus calamus]
 gi|160369877|gb|ABX38768.1| clp protease proteolytic subunit [Acorus americanus]
          Length = 202

 Score =  148 bits (374), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 68/172 (39%), Positives = 111/172 (64%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           DIY+RL +ER++F+  +++  ++  +   +++L  E+  ++  L+INSPGG V  G+ +Y
Sbjct: 22  DIYNRLHRERLLFLGQELDSEISNQLVGLMVYLSIEDKTRDFFLFINSPGGWVIPGIGLY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF+ P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F   QA +  
Sbjct: 82  DTMQFVPPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQAGEFV 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  L  +YV+  GK    V + ++RD  +SA+EA   G+VD V
Sbjct: 142 LEAEELLKLRETLTRVYVQRTGKPLWVVSEDMERDVFLSATEAQAHGIVDLV 193


>gi|290489474|gb|ADD31121.1| clp protease proteolytic subunit protein [Quercus nigra]
          Length = 196

 Score =  148 bits (373), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 69/172 (40%), Positives = 111/172 (64%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           DIY+RL + R++F+  +++  ++  I   +++L  E+  K++ L+INSPGG V  G+AIY
Sbjct: 22  DIYNRLYRARLLFLGQEVDSDLSNQIIGLMVYLSLEDDSKDLYLFINSPGGWVIPGVAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF++P + T CMG AAS+GS LL  GE   R A P+AR+++HQP+  F    A +  
Sbjct: 82  DTMQFVQPDVQTICMGLAASIGSFLLVGGEITKRLAFPHARVMIHQPASSFYEAPAGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  +  +YV+  G     V + ++RD  MSA+EA   G+VD V
Sbjct: 142 LEAEEMMKLRETITRVYVQRTGTPLWVVSEDMERDVFMSATEAQAHGIVDHV 193


>gi|290489462|gb|ADD31115.1| clp protease proteolytic subunit protein [Ficus sp. Moore 315]
          Length = 208

 Score =  148 bits (373), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 68/172 (39%), Positives = 110/172 (63%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           DIY+RL +ER++F+   I   ++  +   +++L  E+  K++ L++NSPGG V  G+ IY
Sbjct: 22  DIYNRLYRERLLFLGQPITSEISNQLIGLMVYLSIEDDTKDLYLFLNSPGGWVIPGLGIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF++P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F   Q  +  
Sbjct: 82  DTMQFVQPDVQTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  L  +Y +  GK+   + + ++RD  MSA+EA   G+VD V
Sbjct: 142 LEAEELLKLRETLTRVYAQRTGKSLWVISEDMERDVFMSATEAQAHGLVDLV 193


>gi|29839992|ref|NP_829098.1| ATP-dependent Clp protease proteolytic subunit [Chlamydophila
           caviae GPIC]
 gi|33300944|sp|Q824C7|CLPP1_CHLCV RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|29834339|gb|AAP04976.1| ATP-dependent Clp protease, proteolytic subunit [Chlamydophila
           caviae GPIC]
          Length = 191

 Score =  148 bits (373), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 73/179 (40%), Positives = 115/179 (64%), Gaps = 2/179 (1%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I  ++L  R VF +  + D  A     +L +LE  +P + I   INSPGG V AG A++D
Sbjct: 13  IDKKILDARRVFFSEPVTDKSAADAIKKLWYLELSHPGQPIVFVINSPGGSVDAGFAVWD 72

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS--GGFSGQASDIE 152
            ++ +  P++T   G AASMGS+L      G RFA P++RI++HQPS  G  +GQA+D++
Sbjct: 73  QIKMMTSPVTTVVTGLAASMGSVLSLCAAPGRRFATPHSRIMIHQPSIGGPITGQATDLD 132

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
            HA++I+K K+R+ ++Y++  G+  E +EK +DRD  M+A EA D+G++D +L S  D+
Sbjct: 133 IHAREILKTKKRIVDVYLEATGQPREVIEKAIDRDMWMTADEAKDFGLLDGILFSFDDL 191


>gi|67460572|sp|Q8UD57|CLPP3_AGRT5 RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
           AltName: Full=Endopeptidase Clp 3
          Length = 201

 Score =  148 bits (373), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 74/172 (43%), Positives = 112/172 (65%), Gaps = 1/172 (0%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           + L K R +F+ G I   +A  +C QL+ L A +   +I +Y+NSPGG V +G +I+D +
Sbjct: 28  ANLFKSRSIFIYGGITQELAQKVCTQLVALAAAS-DDDIRVYVNSPGGHVESGDSIHDMI 86

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQ 156
           +FIKP +     G  AS G+L+  +  K  R  LPN R LLHQPSGG  G ASDIE  A+
Sbjct: 87  KFIKPKVYIIGTGWVASAGALIYVSVPKERRLCLPNTRFLLHQPSGGTRGMASDIEIQAR 146

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           +I+K+ +RL +I+ K  G+T E++ K +DRD+ +SA +A D+G+V K++ S+
Sbjct: 147 EIIKMNQRLIKIFSKATGQTEEKIAKDIDRDYWLSADDAKDYGLVGKIVESQ 198


>gi|116785923|gb|ABK23909.1| unknown [Picea sitchensis]
 gi|148907936|gb|ABR17088.1| unknown [Picea sitchensis]
          Length = 293

 Score =  148 bits (373), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 74/192 (38%), Positives = 122/192 (63%), Gaps = 4/192 (2%)

Query: 29  GERSY---DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV 85
           GE S+   DI++ L +ERI+++   I++  +  I A +L+L++ +  K+I+LYIN PGG 
Sbjct: 94  GEGSWQWVDIWNALYRERIIYIAQYIDEEFSNQILATMLYLDSVDSSKDITLYINGPGGD 153

Query: 86  VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS 145
           VT  M++YDTMQ +K PI T C+G A ++   LL+AG KG R A P++R++L   +G   
Sbjct: 154 VTPCMSMYDTMQSLKSPIGTLCLGYAFNLAGFLLAAGAKGKRGASPSSRVVLQSVAGSAR 213

Query: 146 GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           GQA DIE  A+++++ +  + E   +N G+  E++ K L R    +A EA ++G++D++L
Sbjct: 214 GQADDIENEAKELIRTRNYMFEQLARNTGQPLEKITKDLRRVMYFNAQEALEYGIIDRIL 273

Query: 206 M-SRIDIEEKSK 216
              RI  +  SK
Sbjct: 274 RPPRIKPDASSK 285


>gi|119512062|ref|ZP_01631156.1| ATP-dependent Clp protease proteolytic subunit [Nodularia spumigena
           CCY9414]
 gi|119463288|gb|EAW44231.1| ATP-dependent Clp protease proteolytic subunit [Nodularia spumigena
           CCY9414]
          Length = 220

 Score =  148 bits (373), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 79/197 (40%), Positives = 121/197 (61%), Gaps = 14/197 (7%)

Query: 23  VEQTNRGERSY-----DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           V+   +G+  Y     D+ S L+KERIV++   +   +  LI A+LL+L++++P+K I +
Sbjct: 9   VQAPYQGDSFYRTPPPDLPSLLMKERIVYLGMPLVPAVTELIIAELLYLQSDDPEKPIKI 68

Query: 78  YINSPG---------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           YINS G         G  T   AIYDTM++IKPPI T C+G A  M ++LLSAG KG R 
Sbjct: 69  YINSTGTSGYSGEPIGFETEAFAIYDTMKYIKPPIHTICIGSAMGMAAMLLSAGTKGCRA 128

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LP++ I+LHQP     GQA+DI+  A++++  K  L +I     G+  E++ K +DR  
Sbjct: 129 SLPHSSIILHQPKSYAQGQATDIQIRAREVLINKASLVDILGHTTGQAPEKITKDMDRLL 188

Query: 189 IMSASEACDWGVVDKVL 205
            M+  EA D+G++D+V 
Sbjct: 189 YMTPYEARDYGLIDRVF 205


>gi|110227104|ref|YP_665583.1| ATP-dependent Clp protease proteolytic subunit [Populus alba]
 gi|134093226|ref|YP_001109527.1| ATP-dependent Clp protease proteolytic subunit [Populus
           trichocarpa]
 gi|122224626|sp|Q14FD2|CLPP_POPAL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|160380562|sp|A4GYT6|CLPP_POPTR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|109945542|dbj|BAE97230.1| ATP-dependent Clp protease proteolytic subunit [Populus alba]
 gi|133712088|gb|ABO36731.1| ATP-dependent CLP protease proteolytic subunit [Populus
           trichocarpa]
          Length = 196

 Score =  148 bits (373), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 73/182 (40%), Positives = 114/182 (62%), Gaps = 4/182 (2%)

Query: 27  NRGERS---YDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           N GE S    D+Y+RL +ER++F+   I+  ++  +   +++L  E+  K++ L+INSPG
Sbjct: 12  NPGEDSSNWIDVYNRLYRERLLFLGQDIDSEISNQLIGLMVYLSTESEIKDLYLFINSPG 71

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           G V  G+AIYDTMQF++P + T CMG AASMGS +L  G+   R A P+AR+++HQP   
Sbjct: 72  GWVIPGIAIYDTMQFVRPDVQTVCMGLAASMGSFILVGGKITKRLAFPHARVMIHQPFAA 131

Query: 144 F-SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
           F   Q  +    A++++K++  L  +Y +  GK    V + ++RD  MSA+EA   G+VD
Sbjct: 132 FYEAQIGEFVLEAEELLKLREILTRVYAQRTGKPLWVVSEDMERDVFMSAAEAQVHGIVD 191

Query: 203 KV 204
            V
Sbjct: 192 LV 193


>gi|139389975|ref|YP_001123575.1| ATP-dependent protease subunit [Draba nemorosa]
 gi|160380553|sp|A4QL44|CLPP_DRANE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|134286777|dbj|BAF50399.1| ATP-dependent protease subunit [Draba nemorosa]
          Length = 196

 Score =  148 bits (373), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 71/178 (39%), Positives = 113/178 (63%), Gaps = 2/178 (1%)

Query: 29  GERSY-DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVT 87
           G+ S+ DIY+RL +ER+ F+  +++  ++  + + +++L  E   K++ L+INSPGG V 
Sbjct: 16  GDTSWVDIYNRLYRERLFFLGQEVDTEISNQLISLMIYLSIEKDTKDLYLFINSPGGWVI 75

Query: 88  AGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SG 146
           +GMAIYDTMQF++P + T CMG AAS+ S +L  G    R A P+AR+++HQP+  F   
Sbjct: 76  SGMAIYDTMQFVRPDVQTICMGLAASIASFILVGGAITKRIAFPHARVMIHQPASSFYEA 135

Query: 147 QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           Q  +    A++++KI+  +  +YV+  GK    V + + RD  MSA+EA   G VD V
Sbjct: 136 QTGEFILEAEELIKIRETITRVYVQRTGKPIWVVSEDMKRDVFMSATEAQAHGNVDLV 193


>gi|78212385|ref|YP_381164.1| ATP-dependent Clp protease-like protein [Synechococcus sp. CC9605]
 gi|78196844|gb|ABB34609.1| Endopeptidase Clp [Synechococcus sp. CC9605]
          Length = 225

 Score =  148 bits (373), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 78/190 (41%), Positives = 116/190 (61%), Gaps = 19/190 (10%)

Query: 41  KERIVFV----------TGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG------- 83
           KERIV++            Q+   +  LI AQLL+LE +NP+K I  YINS G       
Sbjct: 30  KERIVYLGLPLFSDDDAKRQMGIDVTELIIAQLLYLEFDNPEKPIYFYINSTGTSWYSGE 89

Query: 84  --GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
             G  T   AI DT++++KPP+ T C+GQA    +++LSAG KG R ALPN+ I+LHQP 
Sbjct: 90  AIGFETEAFAICDTLRYVKPPVHTICIGQAMGTAAVILSAGTKGQRAALPNSSIVLHQPR 149

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            G  GQA+DI+  A++++  K+ + EI   N G++ EE+ K  DR   ++  +A ++G++
Sbjct: 150 SGARGQATDIQIRAKEVLHNKQAMLEILSTNTGRSVEELSKDSDRMSYLTPQQAVEYGLI 209

Query: 202 DKVLMSRIDI 211
           D+VL SR D+
Sbjct: 210 DRVLSSRKDL 219


>gi|218677866|ref|ZP_03525763.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli CIAT
           894]
          Length = 97

 Score =  148 bits (373), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 63/93 (67%), Positives = 83/93 (89%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQ++RGERS+DIYSRLL+ERI+F+ G++ D ++ L+CAQLLFLEAENP+K I
Sbjct: 5   MQLVPMVVEQSSRGERSFDIYSRLLRERIIFLNGEVNDTVSALVCAQLLFLEAENPRKPI 64

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM 108
            LYINSPGGVVT+G+A+YDTM++I+ P+ T CM
Sbjct: 65  HLYINSPGGVVTSGLAMYDTMRYIRAPVHTLCM 97


>gi|18391391|ref|NP_563907.1| CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2); serine-type
           endopeptidase [Arabidopsis thaliana]
 gi|75315329|sp|Q9XJ36|CLPR2_ARATH RecName: Full=ATP-dependent Clp protease proteolytic
           subunit-related protein 2, chloroplastic; Short=ClpR2;
           Short=nClpP2; Flags: Precursor
 gi|8778627|gb|AAF79635.1|AC025416_9 F5O11.13 [Arabidopsis thaliana]
 gi|5360589|dbj|BAA82066.1| nClpP2 [Arabidopsis thaliana]
 gi|17065388|gb|AAL32848.1| similar to nClpP2 [Arabidopsis thaliana]
 gi|20148625|gb|AAM10203.1| similar to nClpP2 dbj|BAA82066.1 [Arabidopsis thaliana]
 gi|332190755|gb|AEE28876.1| ATP-dependent Clp protease, protease subunit [Arabidopsis thaliana]
          Length = 279

 Score =  147 bits (372), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 72/186 (38%), Positives = 116/186 (62%), Gaps = 3/186 (1%)

Query: 23  VEQTNRGERSY---DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           V   NR E ++   DI++ L +ER++F+   I++  +  I A +L+L+  +  + I +Y+
Sbjct: 75  VPYRNREEGTWQWVDIWNALYRERVIFIGQNIDEEFSNQILATMLYLDTLDDSRRIYMYL 134

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           N PGG +T  +AIYDTM+ +K P+ T C+G A ++   LL+AGEKG RFA+P +RI L  
Sbjct: 135 NGPGGDLTPSLAIYDTMKSLKSPVGTHCVGLAYNLAGFLLAAGEKGHRFAMPLSRIALQS 194

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P+G   GQA DI+  A+++ +I+  L     KN G+  E V K L R    +A EA ++G
Sbjct: 195 PAGAARGQADDIQNEAKELSRIRDYLFNELAKNTGQPAERVFKDLSRVKRFNAEEAIEYG 254

Query: 200 VVDKVL 205
           ++DK++
Sbjct: 255 LIDKIV 260


>gi|323455402|gb|EGB11270.1| hypothetical protein AURANDRAFT_21676 [Aureococcus anophagefferens]
          Length = 221

 Score =  147 bits (372), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 75/181 (41%), Positives = 109/181 (60%), Gaps = 9/181 (4%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------G 84
           D+ S LL  RIV++   +   +  LI A+LL+L  E+P K ++LYINSPG         G
Sbjct: 21  DLASLLLHNRIVYLGMPMVSAVTELIVAELLYLNYESPTKPVTLYINSPGTVNSQGQSVG 80

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
             T   AI D M++IKPP+ T C+GQA    ++LL+ GEKG RF LPNA I+LHQP    
Sbjct: 81  FETEAFAIADCMKYIKPPVQTICVGQAFGAAAMLLAQGEKGKRFCLPNASIMLHQPRSQA 140

Query: 145 SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            GQASDI   A++++  ++   E+  + CG++ +EV     R   +   EA ++G++DKV
Sbjct: 141 RGQASDIAIRAREVMSNRKVSCELMARACGRSVDEVMADASRTKYLQPDEAVEYGLIDKV 200

Query: 205 L 205
           L
Sbjct: 201 L 201


>gi|78185115|ref|YP_377550.1| ATP-dependent Clp protease-like protein [Synechococcus sp. CC9902]
 gi|78169409|gb|ABB26506.1| Endopeptidase Clp [Synechococcus sp. CC9902]
          Length = 223

 Score =  147 bits (372), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 79/190 (41%), Positives = 116/190 (61%), Gaps = 19/190 (10%)

Query: 41  KERIVFV----------TGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG------- 83
           KERIV++            Q+   +  LI AQLLFLE ++P+K I  YINS G       
Sbjct: 27  KERIVYLGLPLFSDDDAKRQMGIDVTELIIAQLLFLEFDDPEKPIYFYINSTGTSWYSGD 86

Query: 84  --GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
             G  T   AI DT++++KPP+ T C+GQA    +++LSAG KG R ALP++ I+LHQP 
Sbjct: 87  AIGFETEAFAICDTLRYVKPPVHTICIGQAMGTAAVILSAGTKGQRAALPHSSIVLHQPR 146

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            G  GQA+DI+  A++++  K+ + EI   N G+T EE+ K  DR   ++  EA ++G++
Sbjct: 147 SGAQGQATDIQIRAKEVLHNKQAMLEILSNNTGRTVEELSKNSDRMSYLTPHEAVEFGLI 206

Query: 202 DKVLMSRIDI 211
           D+VL SR D+
Sbjct: 207 DRVLSSRKDL 216


>gi|116072310|ref|ZP_01469577.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           BL107]
 gi|116064832|gb|EAU70591.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           BL107]
          Length = 222

 Score =  147 bits (372), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 79/190 (41%), Positives = 116/190 (61%), Gaps = 19/190 (10%)

Query: 41  KERIVFV----------TGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG------- 83
           KERIV++            Q+   +  LI AQLLFLE ++P+K I  YINS G       
Sbjct: 27  KERIVYLGLPLFSDDDAKRQMGIDVTELIIAQLLFLEFDDPEKPIYFYINSTGTSWYSGD 86

Query: 84  --GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
             G  T   AI DT++++KPP+ T C+GQA    +++LSAG KG R ALP++ I+LHQP 
Sbjct: 87  AIGFETEAFAICDTLRYVKPPVHTICIGQAMGTAAVILSAGTKGQRAALPHSSIVLHQPR 146

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            G  GQA+DI+  A++++  K+ + EI   N G+T EE+ K  DR   ++  EA ++G++
Sbjct: 147 SGAQGQATDIQIRAKEVLHNKQAMLEILSNNTGRTVEELSKNSDRMSYLTPHEAVEFGLI 206

Query: 202 DKVLMSRIDI 211
           D+VL SR D+
Sbjct: 207 DRVLSSRKDL 216


>gi|159903902|ref|YP_001551246.1| ATP-dependent Clp protease-like protein [Prochlorococcus marinus
           str. MIT 9211]
 gi|159889078|gb|ABX09292.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9211]
          Length = 223

 Score =  147 bits (372), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 78/190 (41%), Positives = 116/190 (61%), Gaps = 19/190 (10%)

Query: 41  KERIVFV----------TGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG------- 83
           KERIV++            Q+   +  LI AQLL+LE +NP K +  YINS G       
Sbjct: 27  KERIVYLGLPLFSDDDAKRQLGMDVTELIVAQLLYLEFDNPDKPVYFYINSTGTSWYTGD 86

Query: 84  --GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
             G  T   AI DT+ +IKPP+ T C+GQA    +++LSAG KG R ALP++ I+LHQP 
Sbjct: 87  AIGFETEAFAICDTISYIKPPVHTICIGQAMGTAAVILSAGTKGQRAALPHSSIVLHQPR 146

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            G  GQA+DI+  A++++  K+ + EI  KN G++ EE+ K  DR   ++ ++A ++G++
Sbjct: 147 SGAQGQATDIQIRAKEVIHNKQSMLEILSKNTGRSVEELSKDSDRMSYLNPNQAVEYGLI 206

Query: 202 DKVLMSRIDI 211
           D+VL SR D+
Sbjct: 207 DRVLKSRKDL 216


>gi|150397489|ref|YP_001327956.1| ATP-dependent Clp protease proteolytic subunit [Sinorhizobium
           medicae WSM419]
 gi|150029004|gb|ABR61121.1| Endopeptidase Clp [Sinorhizobium medicae WSM419]
          Length = 195

 Score =  147 bits (372), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 72/175 (41%), Positives = 110/175 (62%), Gaps = 1/175 (0%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           + L K R +F+ G I   +A  +C+QL+ L A +   +I +++NSPGG V +G +I+D +
Sbjct: 22  ANLFKSRSIFIYGNITQELAQKVCSQLVALAAAS-DDDIRIFVNSPGGHVESGDSIHDMI 80

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQ 156
           +F+KP + T   G  AS G+L+  A  K  R  LPN R LLHQPSGG  G ASDIE  A+
Sbjct: 81  KFVKPKVWTIGTGWVASAGALIYVAAPKEQRLCLPNTRFLLHQPSGGTRGMASDIEIQAR 140

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           +I+K+  RLN I+ +  G+  E++ K  DRD+ + A EA  +G+V +++ S  +I
Sbjct: 141 EIIKMNERLNRIFSEATGQPVEKIAKDTDRDYWLGAEEAKAYGLVSRIVTSIAEI 195


>gi|309322471|ref|YP_003933985.1| clp protease proteolytic subunit [Eucalyptus grandis]
 gi|308223305|gb|ADO23613.1| clp protease proteolytic subunit [Eucalyptus grandis]
          Length = 195

 Score =  147 bits (372), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 68/169 (40%), Positives = 110/169 (65%), Gaps = 1/169 (0%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           +RL +ER++F+  +++  ++  +   +++L  EN  K++ L+INSPGG V  G+AIYDTM
Sbjct: 24  NRLYRERLLFLGQEVDSEISNQLIGLMVYLSIENDNKDLYLFINSPGGWVIPGVAIYDTM 83

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIERHA 155
           QF++P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F   Q  +    A
Sbjct: 84  QFVQPDVHTICMGLAASMGSFVLVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFILEA 143

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           ++++K++  +  +YV+  GK    V + ++RD  MSA+EA   G+VD V
Sbjct: 144 EELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLV 192


>gi|88809169|ref|ZP_01124678.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           WH 7805]
 gi|88787111|gb|EAR18269.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           WH 7805]
          Length = 223

 Score =  147 bits (372), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 78/190 (41%), Positives = 115/190 (60%), Gaps = 19/190 (10%)

Query: 41  KERIVFV----------TGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG------- 83
           KERIV++            Q+   +  LI AQLL+LE ++P K I  YINS G       
Sbjct: 27  KERIVYLGLPLFSDDDTKRQVGIDVTELIIAQLLYLEFDDPDKPIYFYINSTGTTWYTGD 86

Query: 84  --GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
             G  T   AI DT++++KPP+ T C+GQA    +++LSAG KG R ALP++ I+LHQP 
Sbjct: 87  AIGFETEAFAICDTLRYVKPPVHTICIGQAMGTAAVILSAGTKGQRAALPHSSIVLHQPR 146

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            G  GQA+DI+  A++++  KR + EI   N G++ EE+ K  DR   ++  +A D+G++
Sbjct: 147 SGARGQATDIQIRAKEVLHNKRAMLEILAANTGRSVEELSKDSDRMSYLTPDQAKDYGLI 206

Query: 202 DKVLMSRIDI 211
           D+VL SR D+
Sbjct: 207 DRVLTSRKDL 216


>gi|297844106|ref|XP_002889934.1| hypothetical protein ARALYDRAFT_471391 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297335776|gb|EFH66193.1| hypothetical protein ARALYDRAFT_471391 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 279

 Score =  147 bits (372), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 72/186 (38%), Positives = 116/186 (62%), Gaps = 3/186 (1%)

Query: 23  VEQTNRGERSY---DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           V   NR E ++   DI++ L +ER++F+   I++  +  I A +L+L+  +  + I +Y+
Sbjct: 75  VPYRNREEGTWQWVDIWNALYRERVIFIGQNIDEEFSNQILATMLYLDTLDDSRRIYMYL 134

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           N PGG +T  +AIYDTM+ +K P+ T C+G A ++   LL+AGEKG RFA+P +RI L  
Sbjct: 135 NGPGGDLTPSLAIYDTMKSLKSPVGTHCVGLAYNLAGFLLAAGEKGHRFAMPLSRIALQS 194

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P+G   GQA DI+  A+++ +I+  L     KN G+  E V K L R    +A EA ++G
Sbjct: 195 PAGAARGQADDIQNEAKELSRIRDYLFNELAKNTGQPAERVFKDLSRVKRFNAEEAIEYG 254

Query: 200 VVDKVL 205
           ++DK++
Sbjct: 255 LIDKIV 260


>gi|18391311|ref|NP_563893.1| CLPP6; serine-type endopeptidase [Arabidopsis thaliana]
 gi|75313132|sp|Q9SAA2|CLPP6_ARATH RecName: Full=ATP-dependent Clp protease proteolytic subunit 6,
           chloroplastic; AltName: Full=Endopeptidase ClpP6;
           Short=nClpP6; AltName: Full=nClpP1; Flags: Precursor
 gi|4835782|gb|AAD30248.1|AC007296_9 Identical to gb|AF016621 ATP-dependent Clp protease proteolytic
           subunit from Arabidopsis thaliana and is a member of the
           PF|00574 CLP_protease family. ESTs gb|F13836 and
           gb|F13997 come from this gene
 gi|13194778|gb|AAK15551.1|AF348580_1 putative ATP-dependent Clp protease proteolytic subunit ClpP6
           [Arabidopsis thaliana]
 gi|21592854|gb|AAM64804.1| ATP-dependent Clp protease proteolytic subunit (ClpP6) [Arabidopsis
           thaliana]
 gi|110737993|dbj|BAF00932.1| putative ATP-dependent Clp protease proteolytic subunit
           [Arabidopsis thaliana]
 gi|332190657|gb|AEE28778.1| ATP-dependent Clp protease proteolytic subunit 6 [Arabidopsis
           thaliana]
          Length = 271

 Score =  147 bits (372), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 65/172 (37%), Positives = 111/172 (64%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+ S L + RI+F+   I   +A  + +QL+ L + + + +I +Y+N PGG   + +AIY
Sbjct: 96  DLSSVLFRNRIIFIGQPINAQVAQRVISQLVTLASIDDKSDILMYLNCPGGSTYSVLAIY 155

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M +IKP + T   G AAS G+LLL+ GEKGMR+A+PN R+++HQP  G  G   D+ R
Sbjct: 156 DCMSWIKPKVGTVAFGVAASQGALLLAGGEKGMRYAMPNTRVMIHQPQTGCGGHVEDVRR 215

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
              + ++ +++++ +Y    G+  E+V++  +RD  +SASEA ++G++D +L
Sbjct: 216 QVNEAIEARQKIDRMYAAFTGQPLEKVQQYTERDRFLSASEALEFGLIDGLL 267


>gi|332190658|gb|AEE28779.1| ATP-dependent Clp protease proteolytic subunit 6 [Arabidopsis
           thaliana]
          Length = 289

 Score =  147 bits (372), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 65/172 (37%), Positives = 111/172 (64%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+ S L + RI+F+   I   +A  + +QL+ L + + + +I +Y+N PGG   + +AIY
Sbjct: 114 DLSSVLFRNRIIFIGQPINAQVAQRVISQLVTLASIDDKSDILMYLNCPGGSTYSVLAIY 173

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M +IKP + T   G AAS G+LLL+ GEKGMR+A+PN R+++HQP  G  G   D+ R
Sbjct: 174 DCMSWIKPKVGTVAFGVAASQGALLLAGGEKGMRYAMPNTRVMIHQPQTGCGGHVEDVRR 233

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
              + ++ +++++ +Y    G+  E+V++  +RD  +SASEA ++G++D +L
Sbjct: 234 QVNEAIEARQKIDRMYAAFTGQPLEKVQQYTERDRFLSASEALEFGLIDGLL 285


>gi|16209712|gb|AAL14412.1| At1g12410/F5O11_7 [Arabidopsis thaliana]
          Length = 279

 Score =  147 bits (372), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 72/186 (38%), Positives = 116/186 (62%), Gaps = 3/186 (1%)

Query: 23  VEQTNRGERSY---DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           V   NR E ++   DI++ L +ER++F+   I++  +  I A +L+L+  +  + I +Y+
Sbjct: 75  VPYRNREEGTWQWVDIWNALYRERVIFIGQNIDEEFSNQILATMLYLDTLDGSRRIYMYL 134

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           N PGG +T  +AIYDTM+ +K P+ T C+G A ++   LL+AGEKG RFA+P +RI L  
Sbjct: 135 NGPGGDLTPSLAIYDTMKSLKSPVGTHCVGLAYNLAGFLLAAGEKGHRFAMPLSRIALQS 194

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P+G   GQA DI+  A+++ +I+  L     KN G+  E V K L R    +A EA ++G
Sbjct: 195 PAGAARGQADDIQNEAKELSRIRDYLFNELAKNTGQPAERVFKDLSRVKRFNAEEAIEYG 254

Query: 200 VVDKVL 205
           ++DK++
Sbjct: 255 LIDKIV 260


>gi|306486008|gb|ADM92652.1| clp protease proteolytic subunit protein [Davidia involucrata]
          Length = 195

 Score =  147 bits (372), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 68/169 (40%), Positives = 110/169 (65%), Gaps = 1/169 (0%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           +RL +ER++F+  +++  ++  +   +++L  E+  K++ L+INSPGG V  G+AIYDTM
Sbjct: 24  NRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTM 83

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIERHA 155
           QF++P + T CMG AASMGS +L  GE   R A P+AR+++HQP S  +  Q  +    A
Sbjct: 84  QFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSYYEAQTGEFILEA 143

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           ++++K++  L  +Y +  GK    V + L+RD  MSA+EA  +G+VD V
Sbjct: 144 EELLKLRETLTRVYAQRTGKPLWVVSEDLERDVFMSATEAKAYGIVDLV 192


>gi|89280660|ref|YP_514877.1| ATP-dependent Clp protease proteolytic subunit [Solanum
           lycopersicum]
 gi|122201771|sp|Q2MI76|CLPP_SOLLC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|84372007|gb|ABC56324.1| clp protease proteolytic subunit [Solanum lycopersicum]
 gi|89241696|emb|CAJ32419.1| ATP-dependent Clp protease proteolytic subunit [Solanum
           lycopersicum]
          Length = 206

 Score =  147 bits (372), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 68/172 (39%), Positives = 110/172 (63%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           DIY+RL +ER++F+   I   ++  +   +L+L  E+  K++ L++NSPGG V  G+AIY
Sbjct: 22  DIYNRLYRERLLFLGQGIGTELSNQLIGLMLYLSMEDENKDLYLFVNSPGGWVIPGIAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS-GQASDIE 152
           DTMQF++P I T C+G AASMGS +L+ G+   R A P+AR+++H+P  GF   Q  +  
Sbjct: 82  DTMQFVRPDIHTICLGLAASMGSFILAGGQLTKRIAFPHARVMIHEPYSGFYMAQVGEFV 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A ++ K++  L  +Y +  G+    + + ++RD  MSA+EA  +G+VD V
Sbjct: 142 LEAIEMAKLRETLTRVYAEKTGQPVWVIHEDMERDIFMSATEAQAYGIVDFV 193


>gi|237688522|ref|YP_002905140.1| ATP-dependent Clp protease proteolytic subunit [Pinus contorta]
 gi|226875351|gb|ACO89089.1| ATP-dependent Clp protease proteolytic subunit [Pinus contorta]
          Length = 205

 Score =  147 bits (371), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 69/172 (40%), Positives = 111/172 (64%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+   I + +A  +   +++L AE+  KEI  +IN PGG V  G+ ++
Sbjct: 22  DLYNRLYRERLLFLAQDINNEIANQLMGLMVYLSAEDANKEIFSFINCPGGSVIPGVGLF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           D MQ I P ++T CMG AASMGS +L  GE   R ALP+AR+++HQP S  + G A+D  
Sbjct: 82  DMMQAIVPDVNTICMGVAASMGSFILIGGEMPKRIALPHARVMIHQPASSYYDGSAADFH 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             ++ +  ++  + E Y++  G+  E +++ L+RD  MSA+EA  +G+VD V
Sbjct: 142 NESKHVTLLREYITECYIERTGQPEEVIQRDLNRDVFMSATEAQAYGIVDVV 193


>gi|166368460|ref|YP_001660733.1| ATP-dependent Clp protease-like protein [Microcystis aeruginosa
           NIES-843]
 gi|159028169|emb|CAO89776.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
 gi|166090833|dbj|BAG05541.1| ATP-dependent Clp protease proteolytic subunit [Microcystis
           aeruginosa NIES-843]
          Length = 228

 Score =  147 bits (371), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 82/210 (39%), Positives = 125/210 (59%), Gaps = 24/210 (11%)

Query: 23  VEQTNRGERSY-----DIYSRLLKERIVF----------VTGQIEDHMATLICAQLLFLE 67
           V+    G+ +Y     D+ S LLKERIV+          V   +   +  LI AQLL+L+
Sbjct: 8   VQTAYYGDAAYRTPPPDLESLLLKERIVYLGLPLFSSDDVKRNVGVDVTELIIAQLLYLQ 67

Query: 68  AENPQKEISLYINSPG---------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLL 118
            ++P+K I  YINS G         G  T   AI DT+ +IKPP+ T C+GQA    +++
Sbjct: 68  FDDPEKPIFFYINSTGTSWYTGDAIGYETEAFAICDTLNYIKPPVHTICIGQAMGTAAMI 127

Query: 119 LSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYE 178
           LSAG KG R +LP+A I+L+Q   G  GQA+DI+  A++++  K+ + EI+ KN G+T E
Sbjct: 128 LSAGTKGFRASLPHATIVLNQNRTGAQGQATDIQIRAKEVIANKQTMLEIFSKNTGQTTE 187

Query: 179 EVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           ++ K +DR   ++  +A D+G++D+VL SR
Sbjct: 188 KLAKDMDRTFYLTPQQAKDYGLIDRVLESR 217


>gi|32480867|ref|NP_862778.1| ATP-dependent Clp protease proteolytic subunit [Calycanthus
           floridus var. glaucus]
 gi|68052187|sp|Q7YJV2|CLPP_CALFG RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|32399403|emb|CAD28745.1| ATP-dependent protease proteolytic subunit [Calycanthus floridus
           var. glaucus]
          Length = 202

 Score =  147 bits (371), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 68/172 (39%), Positives = 110/172 (63%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  +++  ++  +   +++L  E+  K++ L+INSPGG V  G+AIY
Sbjct: 22  DVYNRLHRERLLFLGQEVDSEISNQLVGLMVYLTIEDDTKDLYLFINSPGGWVIPGIAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF+ P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F      +  
Sbjct: 82  DTMQFVSPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAPTGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  L  +YV+  G     V + ++RD  MSA+EA   G+VD V
Sbjct: 142 LEAEELLKLRETLTRVYVQRTGNPLWVVSEDMERDVFMSATEAQAHGIVDLV 193


>gi|307152498|ref|YP_003887882.1| Endopeptidase Clp [Cyanothece sp. PCC 7822]
 gi|306982726|gb|ADN14607.1| Endopeptidase Clp [Cyanothece sp. PCC 7822]
          Length = 222

 Score =  147 bits (371), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 83/211 (39%), Positives = 126/211 (59%), Gaps = 24/211 (11%)

Query: 22  VVEQTNRGERSY-----DIYSRLLKERIVF----------VTGQIEDHMATLICAQLLFL 66
           +V+    G+ S+     D+ S LLKERIV+          +  Q+   +  LI AQLLFL
Sbjct: 1   MVQTAYYGDASFRTPPPDLESLLLKERIVYLGMPLFSSDDIKQQVGIDVTQLIIAQLLFL 60

Query: 67  EAENPQKEISLYINSPG---------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSL 117
           + ++P K I  YINS G         G  T   AI DT+ +IKPP+ T C+GQA    ++
Sbjct: 61  QFDDPDKPIYFYINSTGTSWYTGDAIGFETEAFAICDTINYIKPPVHTICIGQAMGTAAM 120

Query: 118 LLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTY 177
           +LSAG KG R +LP+A I+L+Q   G  GQA+DI+  A++++  KR + EI+ KN G+  
Sbjct: 121 ILSAGTKGCRASLPHATIVLNQNRTGAQGQATDIQIRAKEVLANKRTMLEIFSKNTGQAI 180

Query: 178 EEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E++ K LDR   ++ ++A ++G++D+VL SR
Sbjct: 181 EKLAKDLDRTFYLTPAQAKEYGLIDRVLESR 211


>gi|183240726|gb|ACC61150.1| ClpP [Atocion rupestre]
 gi|183240730|gb|ACC61153.1| ClpP [Viscaria vulgaris]
 gi|183240734|gb|ACC61156.1| ClpP [Petrocoptis pyrenaica]
          Length = 172

 Score =  147 bits (371), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 68/169 (40%), Positives = 110/169 (65%), Gaps = 1/169 (0%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           +RL +ER++F+  +++  ++  +   +++L  E+  K++ L+INSPGG V  G+AIYDTM
Sbjct: 1   NRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTM 60

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIERHA 155
           QF++P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F   Q  +    A
Sbjct: 61  QFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFILEA 120

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           ++++K++  L  +YV+  GK    V + ++RD  MSA+EA   G+VD V
Sbjct: 121 EELLKLRETLTRVYVQRTGKPIWVVSEDMERDVFMSAAEAQAHGIVDLV 169


>gi|183240722|gb|ACC61147.1| ClpP [Agrostemma githago]
          Length = 172

 Score =  147 bits (371), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 68/169 (40%), Positives = 110/169 (65%), Gaps = 1/169 (0%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           +RL +ER++F+  +++  ++  +   +++L  E+  K++ L+INSPGG V  G+AIYDTM
Sbjct: 1   NRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTM 60

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIERHA 155
           QF++P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F   Q  +    A
Sbjct: 61  QFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFILEA 120

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           ++++K++  L  +YV+  GK    V + ++RD  MSA+EA   G+VD V
Sbjct: 121 EELLKLRETLTRVYVQRTGKPVWVVSEDMERDVFMSAAEAQAHGIVDLV 169


>gi|187918699|ref|YP_001884175.1| ATP-dependent Clp protease proteolytic subunit [Borrelia hermsii
           DAH]
 gi|119861547|gb|AAX17342.1| ATP-dependent Clp protease [Borrelia hermsii DAH]
          Length = 196

 Score =  147 bits (371), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 70/174 (40%), Positives = 111/174 (63%)

Query: 40  LKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           LK R + +TG+I    + L   ++LFLEA +  K I +YI+S GG + AG AI++ ++F+
Sbjct: 20  LKSRSIVITGEINKDTSKLFQEKILFLEASDCDKPIFVYIDSEGGDIDAGFAIFNMIRFV 79

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
           KP + T  +G  AS G+L+  A +   RF+LP+AR LLHQP  GF G A+DIE +  ++ 
Sbjct: 80  KPKVFTIGVGLVASAGALIFLAADSNSRFSLPHARYLLHQPLSGFKGVATDIEIYTNELN 139

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
           K+K  LN+I  K  G+   +VEK  DRD  + +  A  +G+V K++ +R+++E+
Sbjct: 140 KVKSELNDIVAKETGQELNKVEKDTDRDFWLDSESAMQYGLVFKIVTTRLELEK 193


>gi|222086641|ref|YP_002545175.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Agrobacterium
           radiobacter K84]
 gi|221724089|gb|ACM27245.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Agrobacterium
           radiobacter K84]
          Length = 195

 Score =  147 bits (371), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 74/188 (39%), Positives = 115/188 (61%), Gaps = 1/188 (0%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           ++ N      D  + L K R +F+ G I   +A  +C+QL+ L + +   +I +Y+NSPG
Sbjct: 9   DKKNEAPLGKDAEANLFKSRSIFIYGGITQELAQKVCSQLVALSSAS-DDDIRIYVNSPG 67

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           G V +G +I+D ++FIKP +     G  AS G+L+  +  K  R  LPN R LLHQPSGG
Sbjct: 68  GHVESGDSIHDMIKFIKPKVWIIGTGWVASAGALIYVSVPKERRICLPNTRFLLHQPSGG 127

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
             G ASDIE  A++I+K+  RLN I+ +  G+  E++ K  DRD+ +SA EA  +G+V +
Sbjct: 128 TRGMASDIEIQAREIIKMNERLNRIFSEATGQPIEKIAKDTDRDYWLSAEEAKAYGLVSR 187

Query: 204 VLMSRIDI 211
           ++ S+ +I
Sbjct: 188 IVTSQAEI 195


>gi|157325555|ref|YP_001468333.1| ATP-dependent Clp protease proteolytic subunit [Ipomoea purpurea]
 gi|157056783|gb|ABV02373.1| clp protease proteolytic subunit [Ipomoea purpurea]
          Length = 204

 Score =  147 bits (371), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 70/175 (40%), Positives = 111/175 (63%), Gaps = 1/175 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           DIY+RL +ER +F+  +I+  +A  I   L++L  E+  K+I LYINSPGG V +G+AIY
Sbjct: 22  DIYNRLYRERFLFLVQEIDSEIANQIVGLLVYLNIEDDTKDIFLYINSPGGDVISGVAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           D MQ ++P +ST C+G AASMGS +L+ G    R A P+AR+++HQP +  F   A ++ 
Sbjct: 82  DMMQTVRPGVSTICIGLAASMGSFILAGGAITRRAAFPHARVMIHQPRTSFFESHAGELL 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
              ++ +K++ R+ EIY +  G     + + +DRD   SA +A  +G++D +  S
Sbjct: 142 LEMKEALKLRERIAEIYAQRTGNPTSIISRDMDRDVFFSARQARIYGIIDDIEFS 196


>gi|72382718|ref|YP_292073.1| ATP-dependent Clp protease-like protein [Prochlorococcus marinus
           str. NATL2A]
 gi|72002568|gb|AAZ58370.1| endopeptidase Clp [Prochlorococcus marinus str. NATL2A]
          Length = 224

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 78/190 (41%), Positives = 114/190 (60%), Gaps = 19/190 (10%)

Query: 41  KERIVFV----------TGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG------- 83
           KERIV++            Q+   +  LI AQLLFLE +N +K I  YINS G       
Sbjct: 27  KERIVYLGLPLFSDDDAKRQLGMDVTELIIAQLLFLEFDNSEKPIYFYINSTGTSWYTGD 86

Query: 84  --GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
             G  T   AI DT++++KPP+ T C+GQA    +++LSAG KG R ALP+A I+LHQP 
Sbjct: 87  AIGFETEAFAICDTLRYVKPPVHTICIGQAMGTAAVILSAGTKGQRAALPHASIVLHQPR 146

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            G  GQA+DI+  A +++  K+ + EI   N G++ +++ K  DR   ++  EA D+G++
Sbjct: 147 SGAQGQATDIQIRANEVIHNKKAMLEILSHNTGRSVDQLSKDSDRMSYLNPHEAVDYGII 206

Query: 202 DKVLMSRIDI 211
           D+VL SR D+
Sbjct: 207 DRVLTSRKDL 216


>gi|194476907|ref|YP_002049086.1| Clp protease proteolytic subunit [Paulinella chromatophora]
 gi|171191914|gb|ACB42876.1| Clp protease proteolytic subunit [Paulinella chromatophora]
          Length = 225

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 75/206 (36%), Positives = 125/206 (60%), Gaps = 7/206 (3%)

Query: 2   SFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYS--RLLKERIVFVTGQIEDHMATLI 59
           +FE     DS + +  L+     ++ +G     +YS  +  ++RI+ ++ ++ D  A+ I
Sbjct: 19  TFEKMQSLDSSNNYSPLLEQEYRESVKG-----LYSIPKNTEDRIILISEEMNDEDASDI 73

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
            AQLL LEAENP ++I +YIN  GG +   + IYDTMQ IKP + T C G A  M   LL
Sbjct: 74  IAQLLMLEAENPDEDIQVYINCMGGSMYGFVGIYDTMQAIKPDVVTLCYGSAFEMSGFLL 133

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
           S G KG R ALPNARI+L+QP   F G  +D++ + ++++ +++ +  +   + G+ +E+
Sbjct: 134 SGGAKGKRLALPNARIMLNQPETSFYGCITDLQLYNKELMLMRKNICSLIAAHTGQRFEK 193

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVL 205
           V    +RD   SA+EA ++G++D++L
Sbjct: 194 VTADTNRDQFFSAAEAIEYGLIDRIL 219


>gi|169794098|ref|YP_001718462.1| ATP-dependent Clp protease proteolytic subunit [Manihot esculenta]
 gi|157695910|gb|ABV66179.1| clp protease proteolytic subunit [Manihot esculenta]
          Length = 195

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 70/169 (41%), Positives = 109/169 (64%), Gaps = 1/169 (0%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           +RL +ER++F+   ++  +A  +   +++L  EN  K++ L+INSPGG V  G+AIYDTM
Sbjct: 24  NRLYRERLLFLGQDVDSEIANQLIGLMVYLSIENATKDLYLFINSPGGWVIPGIAIYDTM 83

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIERHA 155
           QF++P + T CMG AASMGS +L  G+   R A P+AR+++HQP SG +  Q  +    A
Sbjct: 84  QFVRPDVQTVCMGLAASMGSFILVGGKITKRLAFPHARVMIHQPISGYYEAQIVEFVLEA 143

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           ++++K++  L  IY +  GK    V + ++RD  MSA+EA   G+VD V
Sbjct: 144 EELLKLREILTRIYAQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLV 192


>gi|242066888|ref|XP_002454733.1| hypothetical protein SORBIDRAFT_04g036413 [Sorghum bicolor]
 gi|241934564|gb|EES07709.1| hypothetical protein SORBIDRAFT_04g036413 [Sorghum bicolor]
          Length = 276

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 65/177 (36%), Positives = 114/177 (64%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           + D+ + LL  R++F+   I   +A  + +QL+ L A + + +I +Y+N PGG + + +A
Sbjct: 99  ALDLATVLLGNRVIFIGQYINSQVAQRVISQLVTLAAVDEEADILIYLNCPGGSLYSILA 158

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYD M +IKP + T C G  AS  +++L+ GEKGMR+A+PNAR+++HQP GG  G   ++
Sbjct: 159 IYDCMSWIKPKVGTVCFGVVASQAAIILAGGEKGMRYAMPNARVMIHQPQGGSEGNVEEV 218

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
            R   + V  + ++++++    G+  + V++  +RD  MS+SEA D+G+VD +L +R
Sbjct: 219 RRQVGETVYARDKVDKMFAAFTGQPLDMVQQWTERDRFMSSSEAMDFGLVDALLETR 275


>gi|15966135|ref|NP_386488.1| ATP-dependent Clp protease proteolytic subunit [Sinorhizobium
           meliloti 1021]
 gi|307305688|ref|ZP_07585435.1| Endopeptidase Clp [Sinorhizobium meliloti BL225C]
 gi|307317691|ref|ZP_07597130.1| Endopeptidase Clp [Sinorhizobium meliloti AK83]
 gi|7387587|sp|Q9X7L1|CLPP3_RHIME RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
           AltName: Full=Endopeptidase Clp 3
 gi|4539549|emb|CAB39976.1| CLP protease proteolytic subunit [Sinorhizobium meliloti]
 gi|15075405|emb|CAC46961.1| CLP protease proteolytic subunit [Sinorhizobium meliloti 1021]
 gi|306896849|gb|EFN27596.1| Endopeptidase Clp [Sinorhizobium meliloti AK83]
 gi|306902391|gb|EFN32987.1| Endopeptidase Clp [Sinorhizobium meliloti BL225C]
          Length = 195

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 72/175 (41%), Positives = 110/175 (62%), Gaps = 1/175 (0%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           + L K R +F+ G I   +A  +C+QL+ L A +   +I L++NSPGG V +G +I+D +
Sbjct: 22  ANLFKSRSIFIYGTITQELAQKVCSQLVALAAAS-DDDIRLFVNSPGGHVESGDSIHDMI 80

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQ 156
           +F+KP + T   G  AS G+L+  A  K  R  LPN R LLHQPSGG  G ASDIE  A+
Sbjct: 81  KFVKPKVWTIGTGWVASAGALIYVAAPKEQRLCLPNTRFLLHQPSGGTRGMASDIEIQAR 140

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           +I+K+  RLN I+ +  G+  +++ K  DRD+ + A EA  +G+V +++ S  +I
Sbjct: 141 EIIKMNERLNRIFSEATGQPVDKIAKDTDRDYWLGAEEAKAYGLVSRIVTSIAEI 195


>gi|203284651|ref|YP_002222391.1| ATP-dependent Clp protease proteolytic component [Borrelia duttonii
           Ly]
 gi|203288184|ref|YP_002223199.1| ATP-dependent Clp protease proteolytic component [Borrelia
           recurrentis A1]
 gi|201084094|gb|ACH93685.1| ATP-dependent Clp protease proteolytic component [Borrelia duttonii
           Ly]
 gi|201085404|gb|ACH94978.1| ATP-dependent Clp protease proteolytic component [Borrelia
           recurrentis A1]
          Length = 196

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 68/174 (39%), Positives = 112/174 (64%)

Query: 40  LKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           LK R + +TG+I+   + L   ++LFLEA +  K I +YI+S GG + AG AI++ ++F+
Sbjct: 20  LKSRSIVITGEIDKDTSKLFQEKILFLEASDSTKPIFVYIDSEGGDIDAGFAIFNMIRFV 79

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
           +P + T  +G  AS G+L+  A +   RF+LP+AR LLHQP  GF G A+DIE +  ++ 
Sbjct: 80  RPKVFTIGVGLVASAGALIFLAADSKSRFSLPHARYLLHQPLSGFKGVATDIEIYTNELN 139

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
           K+K  LN+I  K  G+   +VEK  DRD  + +  A  +G+V +++ +R+++E+
Sbjct: 140 KVKSELNDIIAKETGQELNKVEKDTDRDFWLDSESAVKYGLVFQIITTRLELEK 193


>gi|124026439|ref|YP_001015554.1| ATP-dependent Clp protease-like protein [Prochlorococcus marinus
           str. NATL1A]
 gi|123961507|gb|ABM76290.1| Clp protease proteolytic subunit [Prochlorococcus marinus str.
           NATL1A]
          Length = 224

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 78/190 (41%), Positives = 114/190 (60%), Gaps = 19/190 (10%)

Query: 41  KERIVFV----------TGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG------- 83
           KERIV++            Q+   +  LI AQLLFLE +N +K I  YINS G       
Sbjct: 27  KERIVYLGLPLFSDDDAKRQLGMDVTELIIAQLLFLEFDNSEKPIYFYINSTGTSWYTGD 86

Query: 84  --GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
             G  T   AI DT++++KPP+ T C+GQA    +++LSAG KG R ALP+A I+LHQP 
Sbjct: 87  AIGFETEAFAICDTLRYVKPPVHTICIGQAMGTAAVILSAGTKGQRAALPHASIVLHQPR 146

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            G  GQA+DI+  A +++  K+ + EI   N G++ +++ K  DR   ++  EA D+G++
Sbjct: 147 SGAQGQATDIQIRANEVIHNKKAMLEILSHNTGRSVDQLSKDSDRMSYLNPHEAVDYGII 206

Query: 202 DKVLMSRIDI 211
           D+VL SR D+
Sbjct: 207 DRVLTSRKDL 216


>gi|84996251|ref|XP_952847.1| CLP protease [Theileria annulata strain Ankara]
 gi|65303845|emb|CAI76222.1| CLP protease, putative [Theileria annulata]
          Length = 271

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 79/214 (36%), Positives = 121/214 (56%), Gaps = 44/214 (20%)

Query: 36  YSRLL-----KERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG- 89
           Y++LL     K RI+F++G++ D ++  I + +L +   +P+  I  YINSPGG VT+G 
Sbjct: 55  YNKLLDEFYIKNRIIFLSGELNDKVSFKIISSILRINENDPKLPIKFYINSPGGSVTSGN 114

Query: 90  -------------MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
                        +AI+D ++ +K P+ T  +GQAASMG+ LL++G KGMR+A+PN+RI+
Sbjct: 115 FITQFLHTLFFLGLAIFDILRSLKMPVETISLGQAASMGAFLLASGTKGMRYAMPNSRIM 174

Query: 137 LHQPSG-------------------------GFSGQASDIERHAQDIVKIKRRLNEIYVK 171
           +HQP G                         G  GQASDIE  A +I++I+  LN     
Sbjct: 175 IHQPLGTLRCSVTVLAPAAPIITNPPKGLYRGAHGQASDIEIQANEILQIREILNTNLSN 234

Query: 172 NCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
             GK+ EE+EK   RD+ M  SEA  +G++D ++
Sbjct: 235 FTGKSVEEIEKDCSRDNYMRPSEALQYGLIDHII 268


>gi|330991950|ref|ZP_08315899.1| ATP-dependent Clp protease proteolytic subunit 2 [Gluconacetobacter
           sp. SXCC-1]
 gi|329760971|gb|EGG77466.1| ATP-dependent Clp protease proteolytic subunit 2 [Gluconacetobacter
           sp. SXCC-1]
          Length = 224

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 75/174 (43%), Positives = 111/174 (63%), Gaps = 3/174 (1%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           ++ SRL  +R V V G I D +A  +  +LL L   +  K I +Y+NSPGG V +G  I+
Sbjct: 45  ELESRLFDQRKVLVFGPINDKIARDVTGRLLALAGAS-DKPIDVYVNSPGGHVESGDTIH 103

Query: 94  DTMQFIK--PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           D ++F+    PI+    G  AS G+L+ +AG K  RF LPN R LLHQP GG  G A+DI
Sbjct: 104 DMIRFVDSVAPINMIGTGWVASAGALIFAAGNKERRFCLPNTRFLLHQPMGGVRGPATDI 163

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           +  A++IVK++ RLN ++ +  G+ YE+V K  DR++ MSA EA ++G+V +V+
Sbjct: 164 DIEAREIVKMRARLNHLFARETGQPYEKVCKDTDRNYWMSAPEAIEYGLVTRVI 217


>gi|544043|sp|P36387|CLPP_PINCO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|457148|gb|AAA68094.1| ATP-dependent protease proteolytic subunit [Pinus contorta]
          Length = 205

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 69/172 (40%), Positives = 110/172 (63%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+   I + +A  +   +++L AE+  KEI  +IN PGG V  G+ +Y
Sbjct: 22  DLYNRLYRERLLFLAQDINNEIANQLMGLMVYLSAEDANKEIFSFINCPGGSVIPGVGLY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
             MQ I P ++T CMG AASMGS +L  GE   R ALP+AR+++HQP S  + G A+D  
Sbjct: 82  RMMQAIVPDVNTICMGVAASMGSFILIGGEMPKRIALPHARVMIHQPASSYYDGSAADFH 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             ++ +  ++  + E Y++  G+  E +++ L+RD  MSA+EA  +G+VD V
Sbjct: 142 NESKHVTLVREYITECYIERTGQPEEVIQRDLNRDVFMSATEAQAYGIVDVV 193


>gi|34500938|ref|NP_904123.1| ATP-dependent Clp protease proteolytic subunit [Amborella
           trichopoda]
 gi|68052165|sp|Q70XY2|CLPP_AMBTC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|34481653|emb|CAD45131.1| ATP-dependent protease proteolytic subunit [Amborella trichopoda]
          Length = 202

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 68/172 (39%), Positives = 110/172 (63%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           DIY+RL +ER++F+  ++E  ++  I   +++L  E+  +++ L+INSPGG V  G+AIY
Sbjct: 22  DIYNRLHRERLLFLGQEVEGEISNQIVGLMVYLSIEDDTRDLYLFINSPGGWVIPGIAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           D MQF+ P + T CMG AASMGS +L+ GE   R A P+AR+++HQP+  F    A +  
Sbjct: 82  DAMQFVPPDVHTICMGLAASMGSFVLAGGEITKRLAFPHARVMIHQPASSFYEAPAGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A +++K++  +  +YV+  G     V + ++RD  MSA+EA   G+VD +
Sbjct: 142 LEAGELLKLRETITSVYVQRTGNPLWVVSEDMERDVFMSATEAQAHGIVDLI 193


>gi|325210985|ref|YP_004286029.1| clp protease proteolytic subunit [Gossypium thurberi]
 gi|290775847|gb|ADD62343.1| clp protease proteolytic subunit [Gossypium thurberi]
          Length = 196

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/170 (41%), Positives = 111/170 (65%), Gaps = 2/170 (1%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           +RL +ER++F+  +++  ++  +   +++L  EN  K++ L+INSPGG V  G+AIYDTM
Sbjct: 24  NRLYRERLLFLGQEVDSEISNQLIGLMVYLSIENDTKDLYLFINSPGGWVIPGVAIYDTM 83

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA-RILLHQPSGGF-SGQASDIERH 154
           QF++P + T CMG AASMGS LL+ GE   R A P+A R+++HQP+  F   Q  +    
Sbjct: 84  QFVQPDVHTICMGLAASMGSFLLAGGEITKRLAFPHARRVMIHQPASSFYEAQTGEFILE 143

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           A++++K++  L  +YV+  GK    V + ++RD  MSA+EA   G+VD V
Sbjct: 144 AEELLKLRESLTRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLV 193


>gi|69214843|gb|AAZ03804.1| ATP-depedent Clp protease proteolytic subunit [Yucca schidigera]
          Length = 195

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 67/169 (39%), Positives = 110/169 (65%), Gaps = 1/169 (0%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           +RL +ER++F+  +++  ++  +   +++L  E+  K++ L+INSPGG V  G+AIYDTM
Sbjct: 24  NRLYRERLLFLGQEVDSEISNQLVGLMVYLSIEDDTKDLYLFINSPGGWVIPGIAIYDTM 83

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIERHA 155
           QF+ P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F   QA +    A
Sbjct: 84  QFVSPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQAGEFILEA 143

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           ++++K++  L ++YV+  G     + + ++RD  MSA+EA   G+VD V
Sbjct: 144 EELLKLRETLTKVYVQRTGNPLWVISEDMERDVFMSATEAQAHGIVDLV 192


>gi|290489478|gb|ADD31123.1| clp protease proteolytic subunit protein [Trochodendron aralioides]
          Length = 202

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 67/172 (38%), Positives = 110/172 (63%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+   ++  ++  +   +++L  E+  +++ L+INSPGG V  G+AIY
Sbjct: 22  DVYNRLHRERLLFLGQDVDSEISNQLIGLMVYLSIEDDTRDLYLFINSPGGWVIPGVAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF+ P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F   Q  +  
Sbjct: 82  DTMQFVPPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  +  +YV+  G     V + ++RD  MSA+EA   G+VD V
Sbjct: 142 LEAEELLKLRETITRVYVQRTGNPLWVVSEDMERDVFMSATEAQAHGLVDLV 193


>gi|139389667|ref|YP_001123224.1| ATP-dependent protease subunit [Arabis hirsuta]
 gi|160380543|sp|A4QK43|CLPP_ARAHI RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|134286422|dbj|BAF50048.1| ATP-dependent protease subunit [Arabis hirsuta]
          Length = 196

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/178 (39%), Positives = 114/178 (64%), Gaps = 2/178 (1%)

Query: 29  GERSY-DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVT 87
           G+ S+ DIY+RL +ER+ F+  +++  ++  + + +++L  E   K++ L+INSPGG V 
Sbjct: 16  GDTSWVDIYNRLYRERLFFLGQEVDTEISNQLISLMIYLSIEKDTKDLYLFINSPGGWVI 75

Query: 88  AGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SG 146
           +GMAIYDTMQF++P + T  MG AAS+ S +L  G    R A P+AR+++HQP+  F   
Sbjct: 76  SGMAIYDTMQFVRPDVQTIGMGLAASIASFILVGGAITKRIAFPHARVMIHQPASSFYEA 135

Query: 147 QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           Q  +    A++++KI+  +  +YV+  GK    V + ++RD  MSA+EA   G+VD V
Sbjct: 136 QTGEFILEAEELLKIRETITRVYVQRTGKPIWVVSEDMERDVFMSATEAQAHGIVDLV 193


>gi|17231850|ref|NP_488398.1| ATP-dependent Clp protease-like protein [Nostoc sp. PCC 7120]
 gi|17133494|dbj|BAB76057.1| ATP-dependent Clp protease proteolytic subunit [Nostoc sp. PCC
           7120]
          Length = 220

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 72/174 (41%), Positives = 111/174 (63%), Gaps = 9/174 (5%)

Query: 41  KERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------GVVTAGMA 91
           KERIV++   +   +  LI AQLL+L++++P K I +YINS G         G  T   A
Sbjct: 32  KERIVYLGMPLVPAVTELIVAQLLYLQSDDPDKPIKIYINSTGTSGYSGEPIGFETEAFA 91

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYDTM++IKPPI T C+G A  M ++LLSAG KG R +LP++ I+LHQP     GQA+DI
Sbjct: 92  IYDTMKYIKPPIHTICIGSAMGMAAMLLSAGTKGCRASLPSSSIILHQPKSYAQGQATDI 151

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           +  A++++  K  + +I+ +  G+  E++ K +DR   M+  +A D+G++D+V 
Sbjct: 152 QIRAREVLVNKGSMVDIFARTTGQAPEKITKDMDRLLYMTPYQAKDYGLIDRVF 205


>gi|33866182|ref|NP_897741.1| ATP-dependent Clp protease-like protein [Synechococcus sp. WH 8102]
 gi|33639157|emb|CAE08163.1| ATP-dependent Clp protease proteolytic subunit 4 [Synechococcus sp.
           WH 8102]
          Length = 222

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 77/187 (41%), Positives = 115/187 (61%), Gaps = 19/187 (10%)

Query: 41  KERIVFV----------TGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG------- 83
           KERIV++            Q+   +  LI AQLLFLE +NP+K I  YINS G       
Sbjct: 27  KERIVYLGLPLFSDDDAKRQMGIDVTELIIAQLLFLEFDNPEKPIYFYINSTGTSWYSGD 86

Query: 84  --GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
             G  T   AI DT++++KPP+ T C+GQA    +++LSAG KG R ALP++ I+LHQP 
Sbjct: 87  AIGFETEAFAICDTLRYVKPPVHTICIGQAMGTAAVILSAGTKGQRAALPHSSIVLHQPR 146

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            G  GQA+DI+  A++++  K+ + EI   N G++ EE+ K  DR   ++ ++A ++G++
Sbjct: 147 SGAQGQATDIQIRAKEVLHNKQAMLEILSTNTGRSVEELSKDSDRMSYLTPAQAVEYGLI 206

Query: 202 DKVLMSR 208
           D+VL SR
Sbjct: 207 DRVLSSR 213


>gi|255646657|gb|ACU23802.1| unknown [Glycine max]
          Length = 273

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 67/172 (38%), Positives = 105/172 (61%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+ S L + RI+F+   +   +A  + +QL+ L   N   +I +YIN PGG   + +AIY
Sbjct: 98  DLTSVLFRNRIIFIGQPVNSQVAQRVISQLVTLATINENADILVYINCPGGSTYSVLAIY 157

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M +IKP + T C G AAS G+L L+ GEKGMR+A+PNARI +HQP  G  G   D+ R
Sbjct: 158 DCMSWIKPKVGTVCFGVAASQGALFLAGGEKGMRYAMPNARITIHQPQSGCGGHVEDVRR 217

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
              + V+ + +++++Y    G+  E+V++  +RD  +   EA ++G +D VL
Sbjct: 218 QVNEAVQSRHKIDKMYSVFTGQPLEKVQQYTERDRFLFVFEALEFGFIDGVL 269


>gi|317134129|ref|YP_004123449.1| ClpP [Rhizanthella gardneri]
 gi|255985060|gb|ACU46607.1| ClpP [Rhizanthella gardneri]
          Length = 195

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 65/172 (37%), Positives = 112/172 (65%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  +++  ++  +   +++L  E+  +++ L+INSPGG V  G++IY
Sbjct: 22  DVYNRLYRERLLFLGQEVDSEISNQLVGLMVYLSIEDNTRDLHLFINSPGGWVIPGISIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF+ P + T C+G AAS+GSL+L  GE   R A P+AR+++HQP+  F   Q  +  
Sbjct: 82  DTMQFVPPTVHTVCIGLAASIGSLILVGGEITKRLAFPHARVMIHQPASSFYESQVGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++ +K++  + ++YV+   K    + K ++RD  MSA EA  +G+VD V
Sbjct: 142 LEAEEFLKLRETILKVYVQRTSKPLFVISKDIERDVFMSAKEALAYGIVDLV 193


>gi|289065114|ref|YP_003434000.1| clp protease proteolytic subunit [Typha latifolia]
 gi|281371797|gb|ADA63724.1| clp protease proteolytic subunit [Typha latifolia]
          Length = 203

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 68/178 (38%), Positives = 114/178 (64%), Gaps = 1/178 (0%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           +RL +ER++F+  +++  ++  +   +++L  E+  +++ L+INSPGG V  G+AIYDTM
Sbjct: 24  NRLYRERLLFLGQEVDSEISNQLVGLMVYLSIEDDTRDLYLFINSPGGWVIPGIAIYDTM 83

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIERHA 155
           QF+ P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F   QA +    A
Sbjct: 84  QFVPPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQAGEFILEA 143

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
           ++++K++  L ++YV+  G     V + ++RD  MSA+EA   G+VD V +   + E+
Sbjct: 144 EELLKLRETLTKVYVQRTGNPLWVVSEDMERDVFMSATEAQAHGIVDLVAVENENTED 201


>gi|217075244|gb|ACJ85982.1| unknown [Medicago truncatula]
          Length = 195

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 65/172 (37%), Positives = 114/172 (66%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  ++   ++  +   +++L +E+  +++ L+INSPGG V +GMAI+
Sbjct: 22  DLYNRLFQERLLFLGQEVNTEISNQLVGLMVYLSSEDKTRDLYLFINSPGGEVISGMAIF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG-FSGQASDIE 152
           D MQ ++  + T C+G AASMGSLLL  GE   R A P+AR+++HQP+   + GQ  +  
Sbjct: 82  DIMQVVEAEVHTVCVGLAASMGSLLLVGGEFTKRLAFPHARVMIHQPATSLYEGQVGECM 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K+++ +  IY +  GK   ++ + ++RD  MSA EA  +G+VD V
Sbjct: 142 LEAEELLKMRKTITNIYAQRTGKASWQIYRDMERDLFMSAEEAEAYGIVDTV 193


>gi|115604958|ref|YP_784411.1| clp protease proteolytic subunit [Drimys granadensis]
 gi|122164416|sp|Q06GX2|CLPP_DRIGR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|112032686|gb|ABH88321.1| clp protease proteolytic subunit [Drimys granadensis]
          Length = 202

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/172 (38%), Positives = 110/172 (63%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  +++  ++  +   +++L  E+  +++ L+INSPGG V  G+AIY
Sbjct: 22  DVYNRLHRERLLFLGQEVDSEISNQLVGLMVYLSIEDDTRDLYLFINSPGGWVIPGIAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF+ P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F      +  
Sbjct: 82  DTMQFVPPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAPTGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  L  +YV+  G     + + ++RD  MSA+EA   G+VD V
Sbjct: 142 LEAEELLKLRETLTRVYVQRTGNPLWVISEDMERDVFMSATEAQAHGIVDVV 193


>gi|50346808|ref|YP_053179.1| ATP-dependent Clp protease proteolytic subunit [Nymphaea alba]
 gi|121720638|ref|YP_001001559.1| clp protease proteolytic subunit [Nuphar advena]
 gi|68052136|sp|Q6EW27|CLPP_NYMAL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|160380559|sp|A1XFY0|CLPP_NUPAD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|50250353|emb|CAF28619.1| ATP-dependent protease proteolytic subunit [Nymphaea alba]
 gi|84682229|gb|ABC60483.1| clp protease proteolytic subunit [Nuphar advena]
          Length = 202

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 69/172 (40%), Positives = 110/172 (63%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           DIY+RL +ER++F+   ++  ++  +   +++L  E+  +++ L+INSPGG V  G+AIY
Sbjct: 22  DIYNRLHRERLLFLGQGVDSEISNQLVGLMVYLSMEDNTRDLYLFINSPGGWVIPGIAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           D MQ + P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F   QA +  
Sbjct: 82  DAMQIVPPDVHTICMGLAASMGSFILVGGEFTKRLAFPHARVMIHQPASSFYEAQAGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  L  +YV+  GK    V + ++RD  MSA+EA   G+VD V
Sbjct: 142 LEAEELLKLREILTRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLV 193


>gi|15618431|ref|NP_224716.1| ATP-dependent Clp protease proteolytic subunit [Chlamydophila
           pneumoniae CWL029]
 gi|15836051|ref|NP_300575.1| ATP-dependent Clp protease proteolytic subunit [Chlamydophila
           pneumoniae J138]
 gi|16752522|ref|NP_444784.1| ATP-dependent Clp protease proteolytic subunit [Chlamydophila
           pneumoniae AR39]
 gi|33241872|ref|NP_876813.1| ATP-dependent Clp protease proteolytic subunit [Chlamydophila
           pneumoniae TW-183]
 gi|6831515|sp|Q9Z832|CLPP1_CHLPN RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|4376809|gb|AAD18660.1| CLP Protease [Chlamydophila pneumoniae CWL029]
 gi|7189161|gb|AAF38099.1| ATP-dependent Clp protease, proteolytic subunit [Chlamydophila
           pneumoniae AR39]
 gi|8978891|dbj|BAA98726.1| CLP protease [Chlamydophila pneumoniae J138]
 gi|33236381|gb|AAP98470.1| endopeptidase [Chlamydophila pneumoniae TW-183]
 gi|269303395|gb|ACZ33495.1| Clp protease [Chlamydophila pneumoniae LPCoLN]
          Length = 191

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 73/179 (40%), Positives = 116/179 (64%), Gaps = 2/179 (1%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I   LL+ R VF +  + +  A+    +L +LE ++P K I   INSPGG V AG A++D
Sbjct: 13  IEKELLEARRVFFSEPVTEKSASDAIKKLWYLELKDPGKPIVFVINSPGGSVDAGFAVWD 72

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS--GGFSGQASDIE 152
            ++ +  P++T   G AASMGS+L      G RFA P++RI++HQPS  G  +GQA+D++
Sbjct: 73  QIKMLTSPVTTVVTGLAASMGSVLSLCAAPGRRFATPHSRIMIHQPSIGGPITGQATDLD 132

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
            HA++I+K K R+ ++YV+   +  + +EK +DRD  M+A+EA D+G++D +L S  D+
Sbjct: 133 IHAREILKTKARIIDVYVEATNQPRDIIEKAIDRDMWMTANEAKDFGLLDGILFSFNDL 191


>gi|148261149|ref|YP_001235276.1| ATP-dependent Clp protease proteolytic subunit [Acidiphilium
           cryptum JF-5]
 gi|326404550|ref|YP_004284632.1| ATP-dependent Clp protease proteolytic subunit [Acidiphilium
           multivorum AIU301]
 gi|146402830|gb|ABQ31357.1| ATP-dependent Clp protease proteolytic subunit ClpP [Acidiphilium
           cryptum JF-5]
 gi|325051412|dbj|BAJ81750.1| ATP-dependent Clp protease proteolytic subunit [Acidiphilium
           multivorum AIU301]
          Length = 216

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 80/214 (37%), Positives = 121/214 (56%), Gaps = 6/214 (2%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS     + D ED      P   E    G+   ++ +RL K+R V + G+I D +A  + 
Sbjct: 5   MSNRLAPRADDEDAPEKEAP---EAAKAGKVGPELENRLFKQRKVLIFGEIHDRIARAVT 61

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP--PISTFCMGQAASMGSLL 118
            QLL L A    + I +++NSPGG V +G  I+D ++F+    P+     G  AS G+L+
Sbjct: 62  GQLLAL-AGASDEPIDVFVNSPGGHVESGDTIHDVIRFVDATAPVRMIGTGWVASAGALI 120

Query: 119 LSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYE 178
             AG K  RF LPN R LLHQP GG  G A+DI+  A++I+K++ R+N I  +  G+ Y 
Sbjct: 121 YLAGHKDRRFCLPNTRFLLHQPMGGVRGPATDIDIEAREIIKMRERINRIIARETGQDYA 180

Query: 179 EVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
            VEK  DR++ M A EA  +G+V +V+ +  D++
Sbjct: 181 RVEKDTDRNYWMGAEEAIAYGMVSRVVQTMKDLD 214


>gi|83858741|ref|ZP_00952263.1| hypothetical protein OA2633_04541 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853564|gb|EAP91416.1| hypothetical protein OA2633_04541 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 206

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 73/174 (41%), Positives = 110/174 (63%), Gaps = 1/174 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           L + R + +TG I D  A  +CAQL  L A++    I + I+SPGG V +G  I+DTM+F
Sbjct: 33  LFESRTILITGGISDKTAREVCAQLFALAAKS-DDPILMVISSPGGHVESGDMIHDTMKF 91

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           IKP +     G  AS G+L+     K  R+ALPN R LLHQPSGG  G ASDIE   +++
Sbjct: 92  IKPRVIVLGSGWVASAGALIYVGANKEDRYALPNTRFLLHQPSGGAGGMASDIEIQVREM 151

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
             +++RLN+I+    GK+ +++EK  DRD  +SA +A ++G+  K++ S+ +I+
Sbjct: 152 RSMRQRLNQIFADATGKSLDQIEKDTDRDFWLSAKDAVEYGLCGKIITSQDEIK 205


>gi|209519436|ref|ZP_03268232.1| Endopeptidase Clp [Burkholderia sp. H160]
 gi|209500103|gb|EEA00163.1| Endopeptidase Clp [Burkholderia sp. H160]
          Length = 215

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 77/179 (43%), Positives = 113/179 (63%), Gaps = 7/179 (3%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFL--EAENPQKEISLYINSPGGVVTAGMAIYD 94
           +RLL ER V V G I+D +A  +CA+LL L  E+ NP   I ++INSPGG V +G  I+D
Sbjct: 38  NRLLSERRVLVFGTIDDKLARDVCARLLTLASESSNP---IDVFINSPGGHVESGDTIHD 94

Query: 95  TMQFI--KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIE 152
            ++FI    P+     G  AS G+ +     K  R+ALPN R +LHQP GG  GQA+DI 
Sbjct: 95  MVRFIDSTAPVRMVGTGWVASAGATIYLGARKEHRYALPNTRFMLHQPLGGAQGQATDIA 154

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
             A++IVKI+ R+N +  +  G+ YE+V +  DR++ M+A EA ++GVV +++ S  D+
Sbjct: 155 IEAREIVKIRERINRLIAEATGQQYEKVAEDTDRNYWMTAGEALEYGVVGRLIQSLADL 213


>gi|149390466|ref|YP_001294295.1| clp protease proteolytic subunit [Illicium oligandrum]
 gi|160380554|sp|A6MMW9|CLPP_ILLOL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|147917419|gb|ABQ52543.1| clp protease proteolytic subunit [Illicium oligandrum]
          Length = 202

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 67/172 (38%), Positives = 110/172 (63%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+   ++  ++  +   +++L  E+  +++ L+INSPGG V  G+AIY
Sbjct: 22  DVYNRLHRERLLFLGQGVDSEISNQLVGLMVYLSIEDDTRDLYLFINSPGGWVIPGIAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF+ P + T CMG AASMGS LL+ GE   R A P+AR+++HQP+  F   Q  +  
Sbjct: 82  DTMQFVPPDVHTICMGLAASMGSFLLAGGEITKRLAFPHARVMIHQPASSFYEAQTGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  +  +Y +  G     V + ++RD  MSA+EA   G+VD V
Sbjct: 142 LEAEELLKLRETITRVYAQRTGNPLWVVFEDMERDVFMSATEAQAHGIVDLV 193


>gi|115605046|ref|YP_784498.1| clp protease proteolytic subunit [Piper cenocladum]
 gi|122164337|sp|Q06GN5|CLPP_PIPCE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|112253775|gb|ABI14496.1| clp protease proteolytic subunit [Piper cenocladum]
          Length = 202

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 68/172 (39%), Positives = 109/172 (63%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  +++  ++  I   +++L  E+  +++ L+INSPGG V  G+AIY
Sbjct: 22  DVYNRLHRERLLFLGQEVDSEISNQIVGLMVYLSIEDGTRDLYLFINSPGGWVIPGIAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF+ P + T CMG AASMGS +L  GE   R A P+A +++HQP+  F      +  
Sbjct: 82  DTMQFVSPDVHTICMGLAASMGSFILVGGEITKRLAFPHAWVMIHQPASSFYEAPTGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  L  +YV+  G     V + L+RD  MSA+EA   G+VD V
Sbjct: 142 LEAEELLKLRETLTRVYVQRTGNPLWVVSEDLERDVFMSATEAQAHGIVDLV 193


>gi|69214841|gb|AAZ03803.1| ATP-depedent Clp protease proteolytic subunit [Typha latifolia]
          Length = 195

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 67/169 (39%), Positives = 110/169 (65%), Gaps = 1/169 (0%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           +RL +ER++F+  +++  ++  +   +++L  E+  +++ L+INSPGG V  G+AIYDTM
Sbjct: 24  NRLYRERLLFLGQEVDSEISNQLVGLMVYLSIEDDTRDLYLFINSPGGWVIPGIAIYDTM 83

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIERHA 155
           QF+ P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F   QA +    A
Sbjct: 84  QFVPPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQAGEFILEA 143

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           ++++K++  L ++YV+  G     V + ++RD  MSA+EA   G+VD V
Sbjct: 144 EELLKLRETLTKVYVQRTGNPLWVVSEDMERDVFMSATEAQAHGIVDLV 192


>gi|69214835|gb|AAZ03800.1| ATP-depedent Clp protease proteolytic subunit [Ginkgo biloba]
          Length = 201

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 68/169 (40%), Positives = 111/169 (65%), Gaps = 1/169 (0%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           +RL +ER++F+  Q++D +A  +   +++   E+  K+I  YINSPGG V  G+++YD M
Sbjct: 24  NRLHRERLLFLGQQVDDEIANQLIGIMMYPNGEDENKDIYTYINSPGGTVIPGISLYDAM 83

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIERHA 155
           QF+ P + T CMG AASMGS + + GE   R ALP+AR+++HQP S  + GQA +    A
Sbjct: 84  QFVVPDVHTICMGLAASMGSSVSTGGEITKRIALPHARVMIHQPASSYYDGQAGECIMEA 143

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           ++++K++  +  +YV+  GK    + + ++RD  MSA+EA  +G+VD V
Sbjct: 144 EEVLKLRDSITNVYVQRTGKPLWVISEDMERDIFMSAAEAQAYGIVDLV 192


>gi|87302966|ref|ZP_01085770.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           WH 5701]
 gi|87282462|gb|EAQ74421.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           WH 5701]
          Length = 224

 Score =  145 bits (366), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 78/187 (41%), Positives = 114/187 (60%), Gaps = 19/187 (10%)

Query: 41  KERIVFV----------TGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG------- 83
           KERIV++            Q+   +  LI AQLLFLE +NP+K I  YINS G       
Sbjct: 27  KERIVYLGLPLFSDDDAKRQMGIDVTQLIIAQLLFLEFDNPEKPIFFYINSTGTSWYSGD 86

Query: 84  --GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
             G  T   AI DT++++KPP+ T C+GQA    +++LSAG KG R ALP+A I+LHQP 
Sbjct: 87  AIGFETEAFAICDTIRYVKPPVHTICIGQAMGTAAMILSAGAKGHRAALPHASIVLHQPR 146

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            G  GQASDI+  AQ+++  KR + E+   N G++ E++ K  DR   ++  EA ++G++
Sbjct: 147 SGARGQASDIQIRAQEVLHNKRVMLEMLSHNTGRSVEQLSKDSDRMTYLTPREALEYGLI 206

Query: 202 DKVLMSR 208
           D++L S+
Sbjct: 207 DRILTSQ 213


>gi|118591096|ref|ZP_01548495.1| endopeptidase Clp, subunit 3 protein [Stappia aggregata IAM 12614]
 gi|118436172|gb|EAV42814.1| endopeptidase Clp, subunit 3 protein [Stappia aggregata IAM 12614]
          Length = 204

 Score =  145 bits (366), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 73/184 (39%), Positives = 110/184 (59%), Gaps = 1/184 (0%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           E   + + S  +   L + R V +TG +   MA  +CA+LL L A+     I++ ++SPG
Sbjct: 17  EDKPKSQPSIQVDKHLFEARTVLITGPVTQEMARDVCARLLAL-AQVSNDPITVIVSSPG 75

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           G V +G  I+DT++FI P +    MG  AS G+L+  +  K  RF  PN R LLHQPSGG
Sbjct: 76  GHVESGDMIHDTIKFIAPEVRILGMGWVASAGALIYVSVPKDKRFCTPNTRFLLHQPSGG 135

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
             G A+DIE  A++I+K++ RLN+I+    G+    +EK  DRD+ MS  E  D+G+V K
Sbjct: 136 AGGMATDIEIQAREIIKMRDRLNKIFADATGQPIARIEKDTDRDYWMSPEEGIDYGLVGK 195

Query: 204 VLMS 207
           ++ +
Sbjct: 196 IVTT 199


>gi|58039954|ref|YP_191918.1| ATP-dependent Clp protease proteolytic subunit [Gluconobacter
           oxydans 621H]
 gi|67460437|sp|Q5FQT4|CLPP2_GLUOX RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|58002368|gb|AAW61262.1| ATP-dependent Clp protease proteolytic subunit [Gluconobacter
           oxydans 621H]
          Length = 223

 Score =  145 bits (366), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 74/181 (40%), Positives = 114/181 (62%), Gaps = 3/181 (1%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           ++  RL  +R V + G I D +A  +  +LL L A    K I +Y+NSPGG V +G  I+
Sbjct: 44  ELEGRLFDQRKVLIFGGINDKIARDVTGRLLAL-AGTSDKPIDVYVNSPGGHVESGDTIH 102

Query: 94  DTMQFIK--PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           D ++F+    PI+    G  AS G+L+ +AG    R  LPN R LLHQP GG  G A+DI
Sbjct: 103 DMIRFVDSIAPINMIGTGWVASAGALIYAAGRPERRVCLPNTRFLLHQPMGGVRGPATDI 162

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           +  A++I+K++ RLN I+ K  G+TYE+V K  DR++ MSA+EA  +G+V++++ S  ++
Sbjct: 163 DIEAREIIKMRERLNRIFAKETGQTYEKVAKDTDRNYWMSANEAIAYGLVNRIIHSATEL 222

Query: 212 E 212
           +
Sbjct: 223 K 223


>gi|195644476|gb|ACG41706.1| hypothetical protein [Zea mays]
          Length = 292

 Score =  145 bits (366), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 64/177 (36%), Positives = 114/177 (64%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           + D+ + LL  RI+F+   I   +A  + +QL+ L A + + +I +Y+N PGG + + +A
Sbjct: 115 ALDLATVLLGNRIIFIGQYINSQVAQRVISQLVTLAAIDEEADILIYLNCPGGSLYSILA 174

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYD M +IKP + T C G  AS  +++L+ GEKGMR+A+PNAR+++HQP GG  G   ++
Sbjct: 175 IYDCMSWIKPKVGTVCFGVVASQAAIILAGGEKGMRYAMPNARVMIHQPQGGSEGNVEEV 234

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
            R   + +  + ++++++    G+  + V++  +RD  MS+SEA D+G++D +L +R
Sbjct: 235 RRQVGETIYARDKVDKMFAAFTGQPLDMVQQWTERDRFMSSSEAMDFGLLDALLETR 291


>gi|324986430|ref|YP_004276301.1| ATP-dependent Clp protease proteolytic subunit [Pinus monophylla]
 gi|228016061|gb|ACP50899.1| ATP-dependent Clp protease proteolytic subunit [Pinus rzedowskii]
 gi|323522525|gb|ADX94867.1| ATP-dependent Clp protease proteolytic subunit [Pinus monophylla]
          Length = 196

 Score =  145 bits (366), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 70/172 (40%), Positives = 108/172 (62%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+   I   +A  +   +++L AE+  K+I L+IN PGG V  G+ ++
Sbjct: 22  DLYNRLYRERLLFLAQDINHEIANQLMGLMVYLSAEDANKDIFLFINCPGGSVIPGVGLF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           D MQ I P + T CMG AASMGS +L  GE   R ALP+AR+++HQP S  + G A++  
Sbjct: 82  DMMQVIVPNVHTICMGVAASMGSFILIGGEITKRMALPHARVMIHQPASSYYDGPAAEFH 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A+ I  ++  + + YV+      E +++ LDRD  MSA+EA  +G+VD V
Sbjct: 142 NEAKHITMLRNYITKCYVERTDNPEEVIQRDLDRDIFMSATEARAYGIVDTV 193


>gi|226509256|ref|NP_001140712.1| hypothetical protein LOC100272787 [Zea mays]
 gi|194689904|gb|ACF79036.1| unknown [Zea mays]
 gi|194700704|gb|ACF84436.1| unknown [Zea mays]
 gi|194702420|gb|ACF85294.1| unknown [Zea mays]
 gi|194703926|gb|ACF86047.1| unknown [Zea mays]
 gi|194708092|gb|ACF88130.1| unknown [Zea mays]
          Length = 292

 Score =  145 bits (366), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 64/177 (36%), Positives = 114/177 (64%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           + D+ + LL  RI+F+   I   +A  + +QL+ L A + + +I +Y+N PGG + + +A
Sbjct: 115 ALDLATVLLGNRIIFIGQYINSQVAQRVISQLVTLAAIDEEADILIYLNCPGGSLYSILA 174

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYD M +IKP + T C G  AS  +++L+ GEKGMR+A+PNAR+++HQP GG  G   ++
Sbjct: 175 IYDCMSWIKPKVGTVCFGVVASQAAIILAGGEKGMRYAMPNARVMIHQPQGGSEGNVEEV 234

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
            R   + +  + ++++++    G+  + V++  +RD  MS+SEA D+G++D +L +R
Sbjct: 235 RRQVGETIYARDKVDKMFAAFTGQPLDMVQQWTERDRFMSSSEAMDFGLLDALLETR 291


>gi|115453497|ref|NP_001050349.1| Os03g0411500 [Oryza sativa Japonica Group]
 gi|57222443|gb|AAO37504.2| putative clp-like energy-dependent protease [Oryza sativa Japonica
           Group]
 gi|108708774|gb|ABF96569.1| Clp protease family protein, expressed [Oryza sativa Japonica
           Group]
 gi|113548820|dbj|BAF12263.1| Os03g0411500 [Oryza sativa Japonica Group]
 gi|215678629|dbj|BAG92284.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215765082|dbj|BAG86779.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 259

 Score =  145 bits (366), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 65/177 (36%), Positives = 114/177 (64%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           + D+ + LL  RI+F+   I   +A  + +QL+ L A + + +I +Y+N PGG + + +A
Sbjct: 82  ALDLATVLLGNRIIFIGQYINSQVAQRVISQLVTLAAVDEEADILIYLNCPGGSLYSILA 141

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYD M +IKP + T C G  AS  +++L+ GEKGMR+A+PNAR+++HQP G   G   ++
Sbjct: 142 IYDCMSWIKPKVGTVCFGVVASQAAIILAGGEKGMRYAMPNARVMIHQPQGVSEGNVEEV 201

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
            R   + +  + ++++++    G+T + V++  +RD  MS+SEA D+G+VD +L +R
Sbjct: 202 RRQVGETIYARDKVDKMFAAFTGQTLDMVQQWTERDRFMSSSEAMDFGLVDALLETR 258


>gi|302561916|ref|ZP_07314258.1| Clp protease [Streptomyces griseoflavus Tu4000]
 gi|302479534|gb|EFL42627.1| Clp protease [Streptomyces griseoflavus Tu4000]
          Length = 211

 Score =  145 bits (366), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 75/200 (37%), Positives = 126/200 (63%), Gaps = 2/200 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G+R+ D Y++LL+ERIV +  +I++  A  + AQ ++LE   P ++ISL
Sbjct: 9   VLPEFTERTMSGQRTMDPYAKLLQERIVILGTRIDETSANDVMAQFMYLEHHAPDQDISL 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG   A  AI+DT++++   + T C+GQA    +LLL+AG  G R  LP +R++L
Sbjct: 69  YINSPGGSFHAMSAIHDTLRYVTCDVETVCLGQAEGAAALLLAAGTPGKRLVLPGSRLVL 128

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
            QP       GQ SD+   A+++ +I+ R+ E+ V++ G+T E+V   ++RD ++ A  A
Sbjct: 129 RQPVLLEPVEGQTSDLAIQAEELNRIRARMEEMLVRHTGRTAEQVRADIERDTVLDAGAA 188

Query: 196 CDWGVVDKVLMSRIDIEEKS 215
            ++G+ D+V+  R  +   S
Sbjct: 189 VEYGLADRVVPHRRSLPPAS 208


>gi|166235773|gb|ABY85678.1| ATP-dependent protease proteolytic subunit [Silene sordida]
          Length = 196

 Score =  145 bits (366), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 68/172 (39%), Positives = 108/172 (62%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  +++  ++  +   +++L  E+  K++ L+INSPGG V  G+AIY
Sbjct: 22  DVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF++P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F   Q  +  
Sbjct: 82  DTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  L  +YV+  GK    V         MSA+EA   G+VD V
Sbjct: 142 LEAEELLKLRETLTRVYVQRTGKPIWVVSXXXXXXXXMSAAEAQAHGIVDLV 193


>gi|295137023|ref|YP_003587570.1| ATP-dependent Clp protease proteolytic subunit [Pisum sativum]
 gi|293338595|gb|ADE43568.1| ATP-dependent Clp protease proteolytic subunit [Pisum sativum]
          Length = 199

 Score =  145 bits (365), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 65/172 (37%), Positives = 109/172 (63%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y +L  +R++F+  ++E  ++  +C  +++L  EN  K + L+I SPGG V +G+AI+
Sbjct: 22  DLYHQLFFDRLLFLGQEVESEISNQVCGMMIYLSLENKYKNLYLFIKSPGGEVLSGLAIF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           D MQF++  + T C+G AASM SL+L  GE   R A P+AR+++HQP S  + GQ+ +  
Sbjct: 82  DIMQFVEAEVQTVCVGLAASMASLILLGGEITKRLAFPHARVMIHQPASSAYDGQSGECM 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A +++ I++ +  IY +   K   ++ K LDRD  MSA EA  +G++D +
Sbjct: 142 LEAHELLSIRQTMTNIYCQRTRKPSWQISKDLDRDFFMSAEEAQAYGIIDTI 193


>gi|322708247|gb|EFY99824.1| ATP-dependent Clp protease proteolytic subunit 1 [Metarhizium
           anisopliae ARSEF 23]
          Length = 152

 Score =  145 bits (365), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 73/144 (50%), Positives = 99/144 (68%), Gaps = 7/144 (4%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VT+GMAIYDTM +IK P+ST C+G AASM ++LL+ GE G RFALP++ I+
Sbjct: 1   MYINSPGGSVTSGMAIYDTMTYIKSPVSTVCVGGAASMAAILLAGGEAGKRFALPHSSIM 60

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEI--YVKNCGK-----TYEEVEKTLDRDHI 189
           +HQP GG  GQASDI  +A  I +I+ + N+I  Y  N  K     + EEV   ++RD  
Sbjct: 61  IHQPLGGTRGQASDILIYANQIQRIREQSNKIMQYHLNKAKGTDKYSLEEVNDMMERDKY 120

Query: 190 MSASEACDWGVVDKVLMSRIDIEE 213
           +S  EA + GV+D++L  R D +E
Sbjct: 121 LSVDEALELGVIDEILTKRTDKKE 144


>gi|88800672|ref|ZP_01116232.1| ATP-dependent Clp protease proteolytic subunit [Reinekea sp.
           MED297]
 gi|88776633|gb|EAR07848.1| ATP-dependent Clp protease proteolytic subunit [Reinekea sp.
           MED297]
          Length = 185

 Score =  145 bits (365), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 77/181 (42%), Positives = 109/181 (60%), Gaps = 2/181 (1%)

Query: 28  RGERSYD-IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVV 86
           + E+S D +  RL   R V +  +I   MA  + AQLL L AE    +I L+INS GG V
Sbjct: 2   KDEKSQDPVSERLFSGRKVLICEEINQEMAKKVTAQLLAL-AEESDDDIVLFINSQGGHV 60

Query: 87  TAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG 146
            AG  I+D +QFI P +     G  AS G+ +  A +KG R+ LPN R L+HQPSGG  G
Sbjct: 61  EAGDTIHDIIQFIAPRVKVVGTGYVASAGTHIFLAADKGDRYCLPNTRFLIHQPSGGVGG 120

Query: 147 QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           QASDI   A+ I++++ RL  I  +  G+  + V K ++RD+ M+  EA ++G+VDKV+ 
Sbjct: 121 QASDIAIQAEQIIRMRERLARIISEQTGQPIDRVRKDIERDNWMTTDEAIEYGIVDKVVR 180

Query: 207 S 207
           S
Sbjct: 181 S 181


>gi|159161275|ref|YP_001542553.1| clp protease proteolytic subunit [Cuscuta exaltata]
 gi|158938700|gb|ABW83717.1| clp protease proteolytic subunit [Cuscuta exaltata]
          Length = 202

 Score =  145 bits (365), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 78/191 (40%), Positives = 119/191 (62%), Gaps = 6/191 (3%)

Query: 19  VPMVVEQTNRGERS---YDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           VP V  Q  R +RS    DIY+RL +ER +F+   ++  +A  +    ++L  ++  K+I
Sbjct: 5   VPRVRFQYRR-DRSRVWIDIYNRLYRERCLFLAHVVDSQIANQLVGLFIYLGVQDETKDI 63

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA-R 134
            L+INSPGG + +G AIYDTMQF++P I T C+G AASMGS LL  G    R A P+A R
Sbjct: 64  FLFINSPGGGIISGFAIYDTMQFVRPDIQTICVGLAASMGSFLLVGGAITKRLAFPHAWR 123

Query: 135 ILLHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           +++HQP S  F  Q  +    A++++K++  L E+YV+  GK    + + ++RD  +SA+
Sbjct: 124 VMIHQPMSAFFETQTVEAILEAEELLKLRESLAEVYVQRTGKPGWVIAEDMERDVFLSAT 183

Query: 194 EACDWGVVDKV 204
           EA  +G+VD V
Sbjct: 184 EAQAYGIVDVV 194


>gi|56808248|ref|ZP_00366019.1| COG0740: Protease subunit of ATP-dependent Clp proteases
           [Streptococcus pyogenes M49 591]
          Length = 159

 Score =  145 bits (365), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 70/153 (45%), Positives = 104/153 (67%), Gaps = 2/153 (1%)

Query: 55  MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASM 114
           MA  + AQLLFL+A++  K+I LY+N+PGG V+AG+AI DTM FIK  + T  MG AASM
Sbjct: 1   MANSVIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASM 60

Query: 115 GSLLLSAGEKGMRFALPNARILLHQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKN 172
           G+++ S+G KG RF LPNA  ++HQP    G   Q +D+   A+ ++K + RL +I  +N
Sbjct: 61  GTVIASSGTKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRHRLEKILAQN 120

Query: 173 CGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            GKT +++ K  +RD+ MSA E   +G +D+++
Sbjct: 121 AGKTIKQIHKDAERDYWMSAEETLAYGFIDEIM 153


>gi|148241695|ref|YP_001226852.1| ATP-dependent Clp protease-like protein [Synechococcus sp. RCC307]
 gi|147850005|emb|CAK27499.1| Protease subunit of ATP-dependent Clp protease [Synechococcus sp.
           RCC307]
          Length = 224

 Score =  145 bits (365), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 77/187 (41%), Positives = 112/187 (59%), Gaps = 19/187 (10%)

Query: 41  KERIVFV----------TGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG------- 83
           KERIV++            Q+   +  LI AQLL+LE +NP K I  YINS G       
Sbjct: 31  KERIVYLGLPLFSDDDAKRQMGVDVTELIIAQLLYLEFDNPDKPIFFYINSTGTSWYSGD 90

Query: 84  --GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
             G  T   AI DT++++KPP+ T C+GQA    +++LSAG KG R +LPNA I+LHQP 
Sbjct: 91  AIGFETEAFAICDTIRYVKPPVHTICIGQAMGTAAMILSAGAKGQRASLPNASIVLHQPR 150

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            G  GQA+DI+  AQ+++  KR +  +  +N G+T E++    DR   ++  +A D+G++
Sbjct: 151 SGARGQATDIQIRAQEVLHNKRTMLSMLSENTGRTVEQLTADSDRMTYLTPDQAMDYGLI 210

Query: 202 DKVLMSR 208
           D+VL SR
Sbjct: 211 DRVLSSR 217


>gi|313183847|ref|YP_004021690.1| clp protease proteolytic subunit [Prunus persica]
 gi|309321459|gb|ADO65000.1| clp protease proteolytic subunit [Prunus persica]
          Length = 195

 Score =  144 bits (364), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 70/172 (40%), Positives = 109/172 (63%), Gaps = 2/172 (1%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y RL +ER++F+   ++  ++  +   +++L  E+  K++ L+INSPGG V  G+AIY
Sbjct: 22  DVY-RLYRERLLFLGQGVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIY 80

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF++P I T CMG AASMGS +L  GE   R A P+AR+++HQP+  F   Q  +  
Sbjct: 81  DTMQFVRPDIQTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPAASFYEAQTGEFI 140

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  L  +Y +  GK    V + ++RD  MSA EA   G+VD V
Sbjct: 141 LEAEELLKLRETLTRVYAQRTGKPLWVVSEDMERDVFMSAIEAQAHGIVDLV 192


>gi|296117414|ref|ZP_06836002.1| ATP-dependent Clp protease proteolytic subunit [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295976016|gb|EFG82806.1| ATP-dependent Clp protease proteolytic subunit [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 224

 Score =  144 bits (364), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 74/180 (41%), Positives = 114/180 (63%), Gaps = 3/180 (1%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           ++ SRL  +R V V G I D +A  +  +LL L   +  K I +Y+NSPGG V +G  I+
Sbjct: 45  ELESRLFDQRKVLVFGPINDKIARDVTGRLLALAGAS-DKPIDVYVNSPGGHVESGDTIH 103

Query: 94  DTMQFIK--PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           D ++F+    PI+    G  AS G+L+ +AG +  R+ LPN R LLHQP GG  G A+DI
Sbjct: 104 DMIRFVDSVAPINMIGTGWVASAGALIYAAGNRERRYCLPNTRFLLHQPMGGVRGPATDI 163

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           +  A++I+K++ RLN ++ +  G++YE+V K  DR++ MSA EA ++G+V +V+    DI
Sbjct: 164 DIEAREIIKMRERLNRLFARETGQSYEKVCKDTDRNYWMSAPEAIEYGLVTRVIEKISDI 223


>gi|77414900|ref|ZP_00791005.1| Clp protease [Streptococcus agalactiae 515]
 gi|77159045|gb|EAO70251.1| Clp protease [Streptococcus agalactiae 515]
          Length = 106

 Score =  144 bits (364), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 64/104 (61%), Positives = 87/104 (83%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TGQ+ED+MA  I AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGQVEDNMANSIIAQLLFLDAQDNTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSA 121
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTIIASS 104


>gi|325293629|ref|YP_004279493.1| ATP-dependent Clp protease proteolytic subunit [Agrobacterium sp.
           H13-3]
 gi|325061482|gb|ADY65173.1| ATP-dependent Clp protease proteolytic subunit [Agrobacterium sp.
           H13-3]
          Length = 201

 Score =  144 bits (364), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 72/175 (41%), Positives = 112/175 (64%), Gaps = 1/175 (0%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           + L K R +F+ G I   +A  +C QL+ L A +   +I +Y+NSPGG V +G +I+D +
Sbjct: 28  ANLFKSRSIFIYGGITQELAQKVCTQLVALAAAS-DDDIRVYVNSPGGHVESGDSIHDMI 86

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQ 156
           +FIKP +     G  AS G+L+  +  K  R  LPN R LLHQPSGG  G ASDIE  A+
Sbjct: 87  KFIKPKVYIIGTGWVASAGALIYVSVPKERRLCLPNTRFLLHQPSGGTRGMASDIEIQAR 146

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           +I+K+ +RL +I+ K  G++ E++ K +DRD+ + A EA  +G+V K++ S+ ++
Sbjct: 147 EIIKMNQRLIKIFAKATGQSEEKIAKDIDRDYWLGAEEAKGYGLVGKIVESQSEV 201


>gi|114107071|ref|YP_740227.1| clp protease proteolytic subunit [Liriodendron tulipifera]
 gi|122227470|sp|Q0G9J4|CLPP_LIRTU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|113201019|gb|ABI32534.1| clp protease proteolytic subunit [Liriodendron tulipifera]
          Length = 202

 Score =  144 bits (364), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 65/172 (37%), Positives = 110/172 (63%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+++RL +ER++F+  +++  ++  +   +++L  E+  +++ L+INSPGG V  G++IY
Sbjct: 22  DVFNRLYRERLLFLGQEVDSEISNQLVGLMVYLSIEDDTRDLYLFINSPGGWVIPGISIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF+ P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F      +  
Sbjct: 82  DTMQFVPPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAPTGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  L  +YV+  G     V + ++RD  MSA+EA   G+VD V
Sbjct: 142 LEAEELLKLRETLTRVYVQRTGNPLWVVSEDMERDVFMSAAEAQAHGIVDLV 193


>gi|158335483|ref|YP_001516655.1| ATP-dependent Clp protease-like protein [Acaryochloris marina
           MBIC11017]
 gi|158305724|gb|ABW27341.1| ATP-dependent Clp protease, proteolytic subunit ClpP, putative
           [Acaryochloris marina MBIC11017]
          Length = 228

 Score =  144 bits (364), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 82/194 (42%), Positives = 116/194 (59%), Gaps = 19/194 (9%)

Query: 34  DIYSRLLKERIVF----------VTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           D+ S LLKERIV+          +  Q+   +  LI AQLLFL+ ++P K I  YINS G
Sbjct: 26  DLQSLLLKERIVYLGMPLFSSDDIKRQVGFDVTELIIAQLLFLQFDDPDKPIFFYINSTG 85

Query: 84  ---------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
                    G  T   AI DTM +IKPP+ T C+GQA    +++LSAG KG R +L +A 
Sbjct: 86  TSWYGGDAIGFETEAFAICDTMSYIKPPVHTICIGQAMGTAAMILSAGTKGYRASLGHAT 145

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I+L+Q   G  GQASDI+  AQ+++  K  + +I  KN G+T E++ K +DR   +S  E
Sbjct: 146 IVLNQARSGAQGQASDIQIRAQEVLANKATMLDILQKNTGQTAEKISKDMDRMFYLSPEE 205

Query: 195 ACDWGVVDKVLMSR 208
           A D+G++D+VL S+
Sbjct: 206 AKDYGLIDRVLASQ 219


>gi|11467785|ref|NP_050836.1| ATP-dependent Clp protease proteolytic subunit [Nephroselmis
           olivacea]
 gi|18203460|sp|Q9TL09|CLPP_NEPOL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|5880714|gb|AAD54807.1|AF137379_30 proteolytic subunit 2 of clp protease [Nephroselmis olivacea]
          Length = 208

 Score =  144 bits (364), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 64/176 (36%), Positives = 115/176 (65%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL ++R++F+  ++ D ++  +C  +++L AE+P   + +YINSPGG VT+G+ ++
Sbjct: 22  DLYNRLYRQRLLFMGQELGDELSNQLCGIMIYLFAEDPSIPLFMYINSPGGSVTSGLGVF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D    +   ++T C+G AASM SL+LS G  G R ALP+AR+++HQP GG  GQASD+  
Sbjct: 82  DIATVMMQDVTTICVGIAASMASLVLSGGSTGQRLALPHARMMIHQPEGGSRGQASDVMY 141

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
            + ++ +++  + + YV+   ++ E +   L+RD  MS  +A  +G++D V +  +
Sbjct: 142 ESSEVERLRDIVVDCYVERTHQSRETIIIDLNRDLFMSPRQARSYGLIDAVALPAV 197


>gi|302897551|ref|XP_003047654.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256728585|gb|EEU41941.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 157

 Score =  144 bits (364), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 73/147 (49%), Positives = 100/147 (68%), Gaps = 7/147 (4%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VT+GMAIYDTM +IK P+ST C+G AASM ++LL+ GE G RF+LP++ I+
Sbjct: 1   MYINSPGGSVTSGMAIYDTMSYIKSPVSTVCVGGAASMAAILLAGGEAGKRFSLPHSSIM 60

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEI--YVKNCGK-----TYEEVEKTLDRDHI 189
           +HQP GG  GQASDI  +A  I KI+ + N I  Y  N  K     T EE+   ++RD  
Sbjct: 61  IHQPLGGTRGQASDILIYANQIQKIREQSNHIMQYHLNKAKGHDKYTIEEINDLMERDKY 120

Query: 190 MSASEACDWGVVDKVLMSRIDIEEKSK 216
           +S  EA + GV+D++L  R + E++ K
Sbjct: 121 LSPDEALELGVIDEILTKRPESEQEKK 147


>gi|228016943|gb|ACP51767.1| ATP-dependent Clp protease proteolytic subunit [Pinus banksiana]
          Length = 204

 Score =  144 bits (363), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 67/172 (38%), Positives = 110/172 (63%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+   I + +A  +   +++L AE+  KEI  +IN PGG V  G+ ++
Sbjct: 22  DLYNRLYRERLLFLAQDINNEIANQLMGLMVYLSAEDANKEIFSFINCPGGSVIPGVGLF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           D MQ I P ++T CMG AASMGS +L  GE   R  LP+AR+++HQP S  + G A+D  
Sbjct: 82  DMMQAIVPDVNTICMGVAASMGSFILIGGEMPKRIVLPHARVMIHQPASSYYDGSAADFH 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             ++ +  ++  + + Y++  G+  E +++ L+RD  MSA+EA  +G+VD V
Sbjct: 142 NESKHVTLLREYITKCYIERTGQPEEVIQRDLNRDVFMSATEAQAYGIVDVV 193


>gi|124112049|ref|YP_001019072.1| proteolytic subunit 2 of clp protease [Chlorokybus atmophyticus]
 gi|160380575|sp|Q19VC3|CLPP_CHLAT RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|124012165|gb|ABD62181.2| proteolytic subunit 2 of clp protease [Chlorokybus atmophyticus]
          Length = 225

 Score =  144 bits (363), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 112/183 (61%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ERI+F+   ++D +A  +   ++FL +E+  K I  YINSPGG + +G+ +Y
Sbjct: 22  DVYNRLYRERILFLGEDLDDEVANQLIGVMVFLNSEDDTKGIFFYINSPGGSMNSGLGVY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D +Q I   ++T CMG AASM S +L+ G  G R   P+AR++LHQP GG  G+A  +  
Sbjct: 82  DMIQHINVDVTTICMGLAASMASFILAGGTPGQRLMFPHARVMLHQPMGGNGGKAKYMVE 141

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
            + ++ +++  +  +Y K  G+  E +   ++RD+ M    A ++G++D ++    +++E
Sbjct: 142 ESVEVKRLRELIAHLYAKRTGQPIERIRIDMNRDNFMRPRAAKEYGLIDHMITHITELDE 201

Query: 214 KSK 216
             K
Sbjct: 202 LEK 204


>gi|168007320|ref|XP_001756356.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692395|gb|EDQ78752.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 241

 Score =  144 bits (363), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 78/205 (38%), Positives = 119/205 (58%), Gaps = 11/205 (5%)

Query: 17  GLVPMVV---EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQK 73
           G+V MV+       R +   D+ S L K RIVF+   +   +  L+ A+LL+L+ ++P+K
Sbjct: 22  GVVTMVIPFQRGDARQQPPPDLPSYLFKNRIVFLAMSLVPAVTELVMAELLYLQYDDPEK 81

Query: 74  EISLYINSPG--------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
            I +YINS G        G  T   AIYDTM+++KPPI T C+G A    +LLL+AG KG
Sbjct: 82  SIYMYINSTGTTKDGEKLGYETEAFAIYDTMRYVKPPIFTLCVGNAWGEAALLLAAGSKG 141

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
            R  LP+A I+L QP   F GQA+DI+   +++  +K  L ++  ++ G+T E++   + 
Sbjct: 142 NRACLPSATIMLKQPIAQFRGQATDIDIARKEVRNVKEELVKLISRHTGQTVEKITDDIR 201

Query: 186 RDHIMSASEACDWGVVDKVLMSRID 210
           R       EA D+G++DKVL +  D
Sbjct: 202 RPKYFKPDEAVDYGLIDKVLYAEGD 226


>gi|326496965|dbj|BAJ98509.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 146

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 65/136 (47%), Positives = 97/136 (71%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I +Y+NSPGG VTAGMAI+DTM+ I+P +ST C+G AASMG+ LLS G KG R++LPN+
Sbjct: 1   DIIMYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCIGLAASMGAFLLSGGTKGKRYSLPNS 60

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           RI++HQP GG  GQ +D+E  A +++  K  LN     + G+  +++    DRD  MSA 
Sbjct: 61  RIMIHQPLGGAQGQETDLEIQANEMLHHKANLNGYLAYHTGQPLDKINVDTDRDFFMSAK 120

Query: 194 EACDWGVVDKVLMSRI 209
           EA ++G++D V+++ +
Sbjct: 121 EAKEYGLIDGVIVNPL 136


>gi|67921361|ref|ZP_00514879.1| Peptidase S14, ClpP [Crocosphaera watsonii WH 8501]
 gi|67856473|gb|EAM51714.1| Peptidase S14, ClpP [Crocosphaera watsonii WH 8501]
          Length = 226

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 79/201 (39%), Positives = 121/201 (60%), Gaps = 19/201 (9%)

Query: 26  TNRGERSYDIYSRLLKERIVF----------VTGQIEDHMATLICAQLLFLEAENPQKEI 75
           TN      D+ S LLKERI++          +  Q+   +  LI AQLL+L+ +NP+K I
Sbjct: 14  TNFRTPPPDLESLLLKERIIYLGLPLFSSDEIKQQVGIDVTQLIIAQLLYLQFDNPEKPI 73

Query: 76  SLYINSPG---------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
             YINS G         G  T   AI DTM +IKPPI T C+GQA    +++LSAG KG 
Sbjct: 74  YFYINSTGTSWYTGDAIGFETEAFAICDTMNYIKPPIHTICIGQAMGTAAMILSAGTKGC 133

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           R +LP+A I+L+Q   G  GQA+DI+  A+++++ K+ +  I  +N G+T E++ K +DR
Sbjct: 134 RASLPHATIVLNQNRSGAQGQATDIQIRAKEVLQNKQTMLTILAENTGQTAEKIAKDIDR 193

Query: 187 DHIMSASEACDWGVVDKVLMS 207
              ++ ++A ++G++D+VL S
Sbjct: 194 TFYLTPAKAKEYGLIDRVLES 214


>gi|282891192|ref|ZP_06299695.1| hypothetical protein pah_c048o018 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498885|gb|EFB41201.1| hypothetical protein pah_c048o018 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 199

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 72/175 (41%), Positives = 110/175 (62%), Gaps = 2/175 (1%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           LL+ R +F++  ++ + A  I  +L +LE   P K I   INSPGG V +G AI+D ++ 
Sbjct: 24  LLEARRIFLSDAVDSNTAADIIKKLWYLELTAPGKPILFVINSPGGSVDSGFAIWDQIKM 83

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP--SGGFSGQASDIERHAQ 156
           I  P++T   G AASMGS+L  AG    RFA PN+R ++HQP   G   GQA+D+E  A+
Sbjct: 84  ISSPVTTLVTGLAASMGSVLSLAGAPKRRFATPNSRFMIHQPLIGGVIKGQATDLEIQAK 143

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           +++K +  L E+Y++  GK +  +EK +DRD  MSA EA ++G++  V+ S  D+
Sbjct: 144 EMLKTRNTLIELYMRETGKDFAAIEKAIDRDTWMSAQEAYEFGLLSGVVESYKDL 198


>gi|162146853|ref|YP_001601314.1| ATP-dependent Clp protease proteolytic subunit [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209544637|ref|YP_002276866.1| ATP-dependent Clp protease proteolytic subunit [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161785430|emb|CAP54979.1| ATP-dependent Clp protease proteolytic subunit 2 [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532314|gb|ACI52251.1| Endopeptidase Clp [Gluconacetobacter diazotrophicus PAl 5]
          Length = 224

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 74/181 (40%), Positives = 112/181 (61%), Gaps = 3/181 (1%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           ++ SRL  +R V V G I D +A  +  +LL L   +    I +YINSPGG V +G  I+
Sbjct: 45  ELESRLFDQRKVLVFGAINDKLARDVTGRLLALAGAS-DHPIDVYINSPGGHVESGDTIH 103

Query: 94  DTMQFIK--PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           D ++F+    P++    G  AS G+L+ +AG    RF LPN R LLHQP GG  G A+DI
Sbjct: 104 DMIRFVDSVAPVNVIGTGWVASAGALIFAAGNAQRRFCLPNTRFLLHQPMGGVRGPATDI 163

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           +  A++IVK++ RLN ++ +  G++YE+V +  DR++ MSA EA  +G+V +V+ +  DI
Sbjct: 164 DIEAREIVKMRERLNRLFARETGQSYEKVCRDTDRNYWMSADEAIAYGLVTRVINTLSDI 223

Query: 212 E 212
            
Sbjct: 224 H 224


>gi|326909417|ref|YP_004327687.1| ATP-dependent Clp protease proteolytic subunit [Hevea brasiliensis]
 gi|308523531|gb|ADO33581.1| ATP-dependent Clp protease proteolytic subunit [Hevea brasiliensis]
          Length = 195

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 68/169 (40%), Positives = 108/169 (63%), Gaps = 1/169 (0%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           +RL +ER++F+   ++  ++  +   +++L  E+  K++ L+INSPGG V  G+AIYDTM
Sbjct: 24  NRLYRERLLFLGQDVDSEISNQLIGLMVYLSIESETKDLYLFINSPGGWVIPGIAIYDTM 83

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIERHA 155
           QF++P + T CMG AASMGS +L  G+   R A P+AR+++HQP  GF   Q  +    A
Sbjct: 84  QFVRPDVQTVCMGLAASMGSFILVGGKITKRLAFPHARVMIHQPIAGFYEAQIGEFVLEA 143

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           ++++K++  L  IY +  GK    V + ++RD  MSA+EA   G+VD V
Sbjct: 144 EELLKLREILTRIYAQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLV 192


>gi|324528845|gb|ADY48957.1| ATP-dependent Clp protease proteolytic subunit 1 [Ascaris suum]
          Length = 122

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 62/98 (63%), Positives = 83/98 (84%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VTAG+ IYDTMQ+I  P++T+C+GQA+SMGSLLL AGEKGMR +LPN+RI+
Sbjct: 1   MYINSPGGSVTAGLGIYDTMQYISAPVATWCIGQASSMGSLLLCAGEKGMRSSLPNSRIM 60

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCG 174
           +HQPSGG  G ASD+   A++I ++++RLNE+Y K+ G
Sbjct: 61  VHQPSGGAEGTASDVIIRAEEIARLRKRLNELYAKHTG 98


>gi|209527271|ref|ZP_03275782.1| Endopeptidase Clp [Arthrospira maxima CS-328]
 gi|209492338|gb|EDZ92682.1| Endopeptidase Clp [Arthrospira maxima CS-328]
          Length = 214

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 73/188 (38%), Positives = 116/188 (61%), Gaps = 14/188 (7%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA-- 91
           +IY+RL +ERI+F+   +   +A  + + +L+L++++  K I +YINS G  V AGMA  
Sbjct: 23  NIYTRLSQERIIFLNQPLTTGVANSLVSAMLYLDSDDQNKPIYMYINSIGDPVLAGMANE 82

Query: 92  ------------IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
                       +YDTMQ IK  I T C+GQA  M +LLLS G KG R +LPN+ I L+ 
Sbjct: 83  SMGMMSVMAALAVYDTMQHIKSEIVTICLGQAVGMAALLLSCGSKGKRASLPNSMITLYN 142

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P  G  GQA+DI+  A +I+  +  + +I+ +N G+T E++ K ++R   M+  EA ++G
Sbjct: 143 PQTGTQGQATDIQVTADEILSKRALMMDIFHQNTGQTIEKLTKDMNRTFYMTPEEAKEYG 202

Query: 200 VVDKVLMS 207
           ++D+VL +
Sbjct: 203 IIDRVLTT 210


>gi|149198217|ref|ZP_01875264.1| ATP-dependent Clp protease proteolytic subunit [Lentisphaera
           araneosa HTCC2155]
 gi|149138819|gb|EDM27225.1| ATP-dependent Clp protease proteolytic subunit [Lentisphaera
           araneosa HTCC2155]
          Length = 196

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 71/169 (42%), Positives = 100/169 (59%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           +L  R + +  +I   ++  + +QL+ L   + ++ I +YINS GG   +G  IYD +QF
Sbjct: 23  MLDTRTIIIAEEISPELSRRVLSQLILLNKRSEKEPIYVYINSGGGCADSGFTIYDMLQF 82

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
            K P+ T C G  AS   L+  A +KG  F+LPN+R +LHQPS G  G ASDIE  A++I
Sbjct: 83  FKAPVFTVCSGMCASAAILIFLAAKKGKNFSLPNSRFMLHQPSTGVRGTASDIEITAEEI 142

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
            K + R N+I    C K  EEV K  DRD  MS +EA  +G+V KV+ S
Sbjct: 143 NKTRVRYNQIVADVCNKPLEEVSKDADRDFWMSPAEAKKYGMVSKVITS 191


>gi|295136934|ref|YP_003587767.1| ATP-dependent Clp protease proteolytic subunit [Lathyrus sativus]
 gi|293338656|gb|ADE43628.1| ATP-dependent Clp protease proteolytic subunit [Lathyrus sativus]
          Length = 211

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 67/172 (38%), Positives = 107/172 (62%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y +L   R++F+  +IE  +A  +   +++L  EN  K++ L+INSPGG V +GMAI+
Sbjct: 22  DLYHQLFYSRLLFLGDEIESELANQVAGMMIYLSLENKNKDLYLFINSPGGEVMSGMAIF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           DTMQ ++  + T CMG AASM SL+L+ G    R A P+AR+++HQP S  + G + +  
Sbjct: 82  DTMQVVEAQVHTICMGLAASMASLILAGGGITKRLAFPHARVMIHQPHSAPYEGPSGECM 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A ++V ++  +  IY +   K   ++ K L+RDH MS  EA  +G++D V
Sbjct: 142 LEADEMVILRETITAIYSQRTRKPVWQISKDLERDHFMSPEEAQAYGIIDSV 193


>gi|149390292|ref|YP_001294123.1| clp protease proteolytic subunit [Chloranthus spicatus]
 gi|160380547|sp|A6MME7|CLPP_CHLSC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|146744212|gb|ABQ43284.1| clp protease proteolytic subunit [Chloranthus spicatus]
          Length = 201

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 67/169 (39%), Positives = 108/169 (63%), Gaps = 1/169 (0%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           +RL +ER++F+  +++  ++  +   +++L  E+  +++ L+INSPGG V  G+ IYDTM
Sbjct: 24  NRLHRERLLFLGQEVDSEISNQLVGLMVYLSIEDDTRDLYLFINSPGGWVIPGLTIYDTM 83

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIERHA 155
           QF+ P + T CMG AASMGS +L  GE   R A P+ARI++HQP+  F   QA +    A
Sbjct: 84  QFVPPDVHTICMGLAASMGSFILVGGEITKRLAFPHARIMIHQPASSFYEAQAGEFILEA 143

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           ++++K++  L  +YV+  G     V + ++RD  MSA+EA   G+VD V
Sbjct: 144 EELLKLRETLTRVYVQRTGNPLWIVSEDMERDVFMSATEAQAHGIVDLV 192


>gi|297800408|ref|XP_002868088.1| hypothetical protein ARALYDRAFT_493172 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297313924|gb|EFH44347.1| hypothetical protein ARALYDRAFT_493172 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 305

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 74/180 (41%), Positives = 110/180 (61%), Gaps = 8/180 (4%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG--------GV 85
           D+ S L K RIV++   +   +  LI A+ L+L+ E+ +K I LYINS G        G 
Sbjct: 105 DLASYLFKNRIVYLGMSLVPSVTELILAEFLYLQYEDEEKPIYLYINSTGTTKNGEKLGY 164

Query: 86  VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS 145
            T   AIYD M ++KPPI T C+G A    +LLL+AG KG R ALP++ I++ QP   F 
Sbjct: 165 DTEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLTAGAKGNRSALPSSTIMIKQPIARFQ 224

Query: 146 GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           GQA+D+E   ++I  IK  + ++Y K+ GK+ E++E  + R    S SEA ++G++DKV+
Sbjct: 225 GQATDVEIARKEIKHIKTEMVKLYSKHIGKSPEQIEADMKRPKYFSPSEAVEYGIIDKVV 284


>gi|122894015|ref|YP_001004211.1| clp protease proteolytic subunit [Ranunculus macranthus]
 gi|160380563|sp|A1XGR3|CLPP_RANMC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|85540829|gb|ABC70781.1| clp protease proteolytic subunit [Ranunculus macranthus]
          Length = 201

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 69/172 (40%), Positives = 109/172 (63%), Gaps = 2/172 (1%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y RL +ER++F+   ++  ++  +   +++L  E+  +++ L+INSPGG V  G+AIY
Sbjct: 22  DVY-RLHRERLLFLGQGVDSEISNQLIGLMVYLSLEDETRDLFLFINSPGGWVVPGVAIY 80

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF+ P + T CMG AASMGS LL  GE   R A P+AR+++HQP+  F   Q  +  
Sbjct: 81  DTMQFVPPDVHTICMGLAASMGSFLLVGGEITKRIAFPHARVMIHQPASSFYEAQTGEFV 140

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  L  +YV+  G     V + ++RD  MSA+EA   G+VD V
Sbjct: 141 LEAEELLKLRETLTRVYVQRTGNPLWVVSEDMERDVFMSATEAQAHGIVDFV 192


>gi|220906938|ref|YP_002482249.1| ATP-dependent Clp protease-like protein [Cyanothece sp. PCC 7425]
 gi|219863549|gb|ACL43888.1| Endopeptidase Clp [Cyanothece sp. PCC 7425]
          Length = 218

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 73/174 (41%), Positives = 111/174 (63%), Gaps = 9/174 (5%)

Query: 41  KERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------GVVTAGMA 91
           KERIV++   +   +  LI A+LLFL+ ++P+K I +YINS G         G  T   A
Sbjct: 31  KERIVYLGMPLVPAVTELIIAELLFLQYDDPEKPIKIYINSTGTSRYDGEPIGFETEAFA 90

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           I DTM++IKPPI T C+GQA  M ++LLSAG KG R +LPNA I+LHQ      GQA+DI
Sbjct: 91  ICDTMRYIKPPIHTICIGQAMGMAAMLLSAGTKGCRASLPNATIVLHQTRSYARGQATDI 150

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           +  A++++  +  + +I  +N G+  E++ K +DR   M+  +A ++G++D+VL
Sbjct: 151 QIRAREVLANREIMIDILSRNTGQPPEKISKDMDRLFYMTPQQAVEYGLIDRVL 204


>gi|224126447|ref|XP_002329556.1| predicted protein [Populus trichocarpa]
 gi|118483146|gb|ABK93479.1| unknown [Populus trichocarpa]
 gi|222870265|gb|EEF07396.1| predicted protein [Populus trichocarpa]
          Length = 310

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/209 (38%), Positives = 121/209 (57%), Gaps = 13/209 (6%)

Query: 18  LVPMVVEQTNRG----ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQK 73
           +V MV+  T RG    +   D+ S L K RIV++   +   +  LI A+ L+L+ E+ +K
Sbjct: 91  VVTMVIPYT-RGSAWEQPPPDLASYLFKNRIVYLGMSLVPSVTELILAEFLYLQYEDEEK 149

Query: 74  EISLYINSPG--------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
            I LYINS G        G  T   AIYD M ++KPPI T C+G A    +LLL+AG +G
Sbjct: 150 PIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLAAGSRG 209

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
            R ALP++ I++ QP G F GQA+D+E   ++I  +K  L  +  K+ GK  EE+E  + 
Sbjct: 210 NRSALPSSTIMMKQPIGRFQGQATDVELARKEIKNVKTELVNLLAKHIGKLPEEIEADIS 269

Query: 186 RDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           R    S +EA ++G++DKV+ +    E++
Sbjct: 270 RPKYFSPTEAVEYGIIDKVIYNERTTEDR 298


>gi|225544148|ref|YP_002720137.1| clpP [Jatropha curcas]
 gi|224979589|gb|ACN72716.1| clpP [Jatropha curcas]
          Length = 195

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/169 (40%), Positives = 108/169 (63%), Gaps = 1/169 (0%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           +RL +ER++F+   ++  ++  +   +++L  E+  K++ L+INSPGG V  G+AIYDTM
Sbjct: 24  NRLYRERLLFLGQDVDSEISNQLIGLMVYLSIESETKDLYLFINSPGGWVIPGIAIYDTM 83

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIERHA 155
           QF++P + T CMG AASMGS +L  G+   R A P+AR+++HQP  GF   Q  +    A
Sbjct: 84  QFVRPDVQTVCMGLAASMGSFILVGGKITKRLAFPHARVMIHQPIAGFYEAQIVEFVLEA 143

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           ++++K++  L  IY +  GK    V + ++RD  MSA+EA   G+VD V
Sbjct: 144 EELLKLREILTRIYAQRTGKPLWIVSEDMERDVFMSATEAQAHGIVDLV 192


>gi|255537123|ref|XP_002509628.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis]
 gi|223549527|gb|EEF51015.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis]
          Length = 279

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 67/172 (38%), Positives = 107/172 (62%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+++ L +ER++F+   I++  +  I A +L+L+  +  K I  YIN PGG +T  +AIY
Sbjct: 89  DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDTIDDNKRIYFYINGPGGDLTPTLAIY 148

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           DTMQ +K P+ T C+G A ++   +L+AGEKG R A+P +RI L  P+G   GQA DI  
Sbjct: 149 DTMQSLKSPVGTHCVGFAYNLAGFILAAGEKGNRSAMPLSRIALQSPAGAARGQADDIRN 208

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            A ++++IK  L     K  G+  E++ K L R    +A EA D+G++D+++
Sbjct: 209 EANELLRIKDYLYNELAKKTGQPAEKINKDLSRMKRFNAQEALDYGLIDRII 260


>gi|330444244|ref|YP_004377230.1| Clp protease [Chlamydophila pecorum E58]
 gi|328807354|gb|AEB41527.1| Clp protease [Chlamydophila pecorum E58]
          Length = 194

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 72/176 (40%), Positives = 112/176 (63%), Gaps = 2/176 (1%)

Query: 38  RLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97
           ++L  R VF    + +  A     +L +LE  +P K I+  INSPGG V AG AI+D ++
Sbjct: 19  QILSNRRVFFCEPVTEKSAADAIRKLWYLEMTDPGKPITFVINSPGGSVDAGFAIWDQIK 78

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS--GGFSGQASDIERHA 155
            +  P++T   G AASMGS+L      G RFA P++RI++HQPS  G  +GQA+D++ HA
Sbjct: 79  MLTSPVTTVVTGLAASMGSVLSLCAAPGRRFATPHSRIMIHQPSIGGPITGQATDLDIHA 138

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           ++I+K K R+ ++YV+   +  + +EK +DRD  M+A EA D+G++D +L S  D+
Sbjct: 139 REILKTKARIVDVYVEATHQPRDVIEKAIDRDMWMTADEAKDFGLLDGILFSFNDL 194


>gi|33862588|ref|NP_894148.1| ATP-dependent Clp protease-like protein [Prochlorococcus marinus
           str. MIT 9313]
 gi|124023702|ref|YP_001018009.1| ATP-dependent Clp protease-like protein [Prochlorococcus marinus
           str. MIT 9303]
 gi|33634504|emb|CAE20490.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9313]
 gi|123963988|gb|ABM78744.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9303]
          Length = 223

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 74/187 (39%), Positives = 114/187 (60%), Gaps = 19/187 (10%)

Query: 41  KERIVFV----------TGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG------- 83
           KERIV++            Q+   +  LI AQLL+LE +NP+K I  YINS G       
Sbjct: 27  KERIVYLGLPLFSDDDAKRQLGMDVTELIIAQLLYLEFDNPEKPIYFYINSTGTSWYTGD 86

Query: 84  --GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
             G  T   AI DT++++KPP+ T C+GQA    +++LSAG KG R ALP+A I+LHQP 
Sbjct: 87  AVGFETEAFAICDTLRYVKPPVHTICIGQAMGTAAVILSAGTKGHRAALPHASIVLHQPR 146

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            G  GQA+DI+  A++++  K+ + +I   N G++ E++ K  DR   ++  +A ++G++
Sbjct: 147 SGAQGQATDIQIRAKEVLHNKQAMLKILASNTGRSIEQLSKDSDRMSYLTPGDAVEYGII 206

Query: 202 DKVLMSR 208
           D++L SR
Sbjct: 207 DRILSSR 213


>gi|318040431|ref|ZP_07972387.1| ATP-dependent Clp protease-like protein [Synechococcus sp. CB0101]
          Length = 233

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 76/187 (40%), Positives = 115/187 (61%), Gaps = 19/187 (10%)

Query: 41  KERIVFV----------TGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG------- 83
           KERIV++            Q+   +  LI AQLL+LE +NP+K I  YINS G       
Sbjct: 27  KERIVYLGLPLFSDDDAKRQMGIDVTELIIAQLLYLEFDNPEKPIFFYINSTGTSWYSGD 86

Query: 84  --GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
             G  T   AI DT++++KPP+ T C+GQA    +++LSAG KG R ALP+A I+LHQP 
Sbjct: 87  AIGFETEAFAIADTIRYVKPPVHTICIGQAMGTAAMILSAGTKGHRAALPHASIVLHQPR 146

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            G  GQASDI+  A++++  K+ + E+   N G++ E++ K  DR   ++A +A ++G++
Sbjct: 147 SGARGQASDIQIRAKEVLHNKQTMLEMLSANTGRSVEQLSKDSDRMTYLTAHQAVEYGLI 206

Query: 202 DKVLMSR 208
           D+VL S+
Sbjct: 207 DRVLTSQ 213


>gi|229577779|ref|YP_002836115.1| clp protease proteolytic subunit [Megaleranthis saniculifolia]
 gi|226933907|gb|ACO92040.1| clp protease proteolytic subunit [Megaleranthis saniculifolia]
          Length = 201

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/172 (39%), Positives = 110/172 (63%), Gaps = 2/172 (1%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y RL +ER++F+  +++  ++  +   +++L  E+  +++ L+INSPGG V  G+AIY
Sbjct: 22  DVY-RLHRERLLFLGQEVDSEISNQLIGLMVYLSIEDEIRDLYLFINSPGGWVIPGVAIY 80

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF+ P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F   Q  +  
Sbjct: 81  DTMQFVPPDVHTICMGLAASMGSFILVGGEITKRIAFPHARVMIHQPASSFYEAQTGEFV 140

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  L  +YV+  G     V + ++RD  MSA+EA   G+VD V
Sbjct: 141 LEAEELLKLRETLTRVYVQRTGNPLWVVSEDMERDVFMSATEAQAHGIVDLV 192


>gi|168049469|ref|XP_001777185.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671413|gb|EDQ57965.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 237

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 77/205 (37%), Positives = 119/205 (58%), Gaps = 11/205 (5%)

Query: 17  GLVPMVV---EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQK 73
           G+V MV+       R +   D+ S L K RIVF+   +   +  L+ A+LL+L+ ++P+K
Sbjct: 18  GVVTMVIPFQRGDARQQPPPDLPSYLFKNRIVFLAMSLVPAVTELVMAELLYLQYDDPEK 77

Query: 74  EISLYINSPG--------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
            I +YINS G        G  T   AIYDTM+++KPPI T C+G A    +LLL+AG KG
Sbjct: 78  SIYMYINSTGTTKDGEKLGYETEAFAIYDTMRYVKPPIFTLCVGNAWGEAALLLAAGSKG 137

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
            R  LP+A I+L QP   F GQA+DI+   +++  +K  L ++  ++ G++ E++   + 
Sbjct: 138 NRACLPSATIMLKQPIAQFRGQATDIDIARKEVRNVKEELVKLLSRHTGQSPEKITDDIR 197

Query: 186 RDHIMSASEACDWGVVDKVLMSRID 210
           R       EA D+G++DKVL +  D
Sbjct: 198 RPKYFKPDEAVDYGIIDKVLYAEGD 222


>gi|56751581|ref|YP_172282.1| ATP-dependent Clp protease-like protein [Synechococcus elongatus
           PCC 6301]
 gi|81301347|ref|YP_401555.1| ATP-dependent Clp protease-like protein [Synechococcus elongatus
           PCC 7942]
 gi|18203214|sp|Q9L4P4|CLPR_SYNE7 RecName: Full=Putative ATP-dependent Clp protease proteolytic
           subunit-like; AltName: Full=Endopeptidase Clp-like
 gi|7264063|emb|CAB81780.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus
           elongatus PCC 7942]
 gi|56686540|dbj|BAD79762.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus
           elongatus PCC 6301]
 gi|81170228|gb|ABB58568.1| Endopeptidase Clp [Synechococcus elongatus PCC 7942]
          Length = 228

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 76/190 (40%), Positives = 115/190 (60%), Gaps = 19/190 (10%)

Query: 41  KERIVF----------VTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG------- 83
           KERI++          V  Q+   +  LI AQLL+LE +NP+K I  YINS G       
Sbjct: 31  KERIIYLGMPLFSSDDVKRQVGFDVTELIIAQLLYLEFDNPEKPIYFYINSTGTSWYTGD 90

Query: 84  --GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
             G  T   AI DTM++IKPP+ T C+GQA    +++LS G  G R +LP+A I+L+QP 
Sbjct: 91  AIGYETEAFAICDTMRYIKPPVHTICIGQAMGTAAMILSGGTPGNRASLPHATIVLNQPR 150

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            G  GQASDI+  A++++  KR + EI+ +N G+  + + +  DR   M+ ++A ++G++
Sbjct: 151 TGAQGQASDIQIRAKEVLANKRTMLEIFARNTGQDPDRLARDTDRMLYMTPAQAVEYGLI 210

Query: 202 DKVLMSRIDI 211
           D+VL SR D+
Sbjct: 211 DRVLDSRKDL 220


>gi|46110353|ref|XP_382234.1| hypothetical protein FG02058.1 [Gibberella zeae PH-1]
          Length = 157

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 71/147 (48%), Positives = 99/147 (67%), Gaps = 7/147 (4%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VT+GMAIYDTM +IK P+ST C+G AASM ++LL+ GE G RF+LP++ I+
Sbjct: 1   MYINSPGGSVTSGMAIYDTMTYIKSPVSTVCIGGAASMAAILLAGGEAGKRFSLPHSSIM 60

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEI--YVKNCGKTY-----EEVEKTLDRDHI 189
           +HQP GG  GQASDI  +A  I K + + N+I  Y  N  K +     EE+   ++RD  
Sbjct: 61  IHQPLGGTRGQASDIMIYANQIQKTREQSNKIMQYHLNKAKGHDKYSLEEINDLMERDKY 120

Query: 190 MSASEACDWGVVDKVLMSRIDIEEKSK 216
           ++  EA D GV+D++L  R + E + K
Sbjct: 121 LTPEEALDLGVIDEILTKRPETESEKK 147


>gi|222084109|ref|YP_002519561.1| ATP-dependent Clp protease proteolytic subunit [Keteleeria
           davidiana]
 gi|220983661|dbj|BAH11427.1| ATP-dependent Clp protease proteolytic subunit [Keteleeria
           davidiana]
          Length = 196

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 65/172 (37%), Positives = 110/172 (63%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+   I   +A  +   +++L AE+  +++  ++N PGG V  G+ ++
Sbjct: 22  DLYNRLYRERLLFLAQDINHEIANQLMGLMVYLSAEDANQDMFSFLNCPGGSVIPGVGLF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           D MQ I P + T CMG AASMGS +L  GE   R ALP+AR+++HQP S  + G A+D  
Sbjct: 82  DVMQIIVPDVHTICMGVAASMGSFILIGGEITKRIALPHARVMIHQPASSYYDGPAADFH 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           + +Q +  ++  + + Y++  G + E +++ L+RD  MSA+EA  +G+VD V
Sbjct: 142 KESQHVTMLRDYITKCYIERTGNSGEVIQRDLNRDVFMSATEAQAYGIVDAV 193


>gi|2827888|gb|AAB99906.1| ATP-dependent Clp protease proteolytic subunit [Arabidopsis
           thaliana]
          Length = 271

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 62/172 (36%), Positives = 108/172 (62%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+ S L + RI+F+   I   +A  + +QL+ L + + + +I +Y+N PGG   + + IY
Sbjct: 96  DLSSVLFRNRIIFIGQPINAQVAQRVISQLVTLASIDDKSDILMYLNCPGGSTYSVLTIY 155

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M +IKP + T   G AAS G+  L+ GEKGMR+A+PN R+++HQP  G  G   D+ R
Sbjct: 156 DCMSWIKPKVGTVAFGVAASQGAFFLAGGEKGMRYAMPNTRVMIHQPQTGCGGHVEDVRR 215

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
              + ++ +++++ +Y    G+  E+V++  +RD  +SASEA ++G++D +L
Sbjct: 216 QVNEAIEARQKIDRMYAAFTGQPLEKVQQYTERDRFLSASEAFEFGLIDGLL 267


>gi|224543457|ref|ZP_03683996.1| hypothetical protein CATMIT_02666 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523584|gb|EEF92689.1| hypothetical protein CATMIT_02666 [Catenibacterium mitsuokai DSM
           15897]
          Length = 178

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 74/174 (42%), Positives = 106/174 (60%), Gaps = 1/174 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D  S     R++++T +I D +A  IC Q+  L A +  ++I+L+I SPGG VTAG+AI 
Sbjct: 4   DCISEEFSRRVIYITDEITDSLAADICCQMNHLAAVS-NEDITLWIMSPGGSVTAGLAIL 62

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           DTM  ++  I T  MGQAASM +++ S+G KG R+   NA +++HQ   GFSGQ +DI R
Sbjct: 63  DTMNSVECDIKTIVMGQAASMAAVIASSGTKGKRYIGTNAWMMIHQALAGFSGQTTDILR 122

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
            AQ I +I   L  I  +NC    E + K  DRD+ M+A  A  +G+VD +  S
Sbjct: 123 SAQHIEEINNNLYSILARNCSAHIETIAKDCDRDYHMNARTAIVYGLVDHIYQS 176


>gi|168041627|ref|XP_001773292.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162675334|gb|EDQ61830.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 220

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 70/180 (38%), Positives = 113/180 (62%)

Query: 29  GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTA 88
           G +  DI++ L +ERI+F+   I++     + A +L+L++ +  K + LYIN PGG +T 
Sbjct: 24  GWQWVDIWNVLYRERIIFLGQYIDEEFGNQVVATMLYLDSVDNSKPMHLYINCPGGDITP 83

Query: 89  GMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQA 148
            MAIYDTM+ IK P+ T  +G A +   LLL+AG KGMR A+P  R+ L  P+G   GQA
Sbjct: 84  CMAIYDTMESIKSPVGTLALGYAYNNAGLLLAAGAKGMRVAMPLTRVALMSPAGAARGQA 143

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
            DI   A+++ +++  + E   K  G+ +++V K L+R    SA+EA ++G++DKV+  +
Sbjct: 144 DDIINEAKELNRVRNYVYEQVSKKTGQPFDKVVKDLNRIKRFSANEALEYGIIDKVVRPK 203


>gi|211970349|emb|CAR97864.1| C. elegans protein ZK970.2b, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 117

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/107 (61%), Positives = 85/107 (79%)

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
            I  P+ST+ +GQA+SMGSLLL AGEKGMR ALPN+RI++HQPSGG  G  SDI   A++
Sbjct: 1   MISAPVSTWVIGQASSMGSLLLCAGEKGMRSALPNSRIMVHQPSGGAQGTCSDIVIRAEE 60

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           I ++KRRLNEIYV + G +Y+E+EKTLDRD  MSA EA  +G+VD++
Sbjct: 61  ITRLKRRLNEIYVHHTGMSYDEIEKTLDRDRFMSAHEALKFGLVDQI 107


>gi|328543430|ref|YP_004303539.1| ATP-dependent Clp protease proteolytic subunit [Polymorphum gilvum
           SL003B-26A1]
 gi|326413175|gb|ADZ70238.1| ATP-dependent Clp protease proteolytic subunit [Polymorphum gilvum
           SL003B-26A1]
          Length = 205

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 72/184 (39%), Positives = 111/184 (60%), Gaps = 1/184 (0%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           E+  +  +S  +   L   R V +TG I   +A  +C++LL L A+     I++ ++SPG
Sbjct: 18  EEKTKTPQSIQVDKHLFDARTVLITGPITQELARDVCSRLLAL-AQVSGDPITVIVSSPG 76

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           G V +G  I+DT++FI+P +    MG  AS G+L+  +  K  RF  PN R LLHQPSGG
Sbjct: 77  GHVESGDMIHDTIKFIRPDVRILGMGWVASAGALIYVSVPKERRFCTPNTRFLLHQPSGG 136

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
             G A+DIE  A++I+K++ RLN+I+    G+  E +EK  DRD+ M   E  ++G+V K
Sbjct: 137 AGGMATDIEIQAREILKMRDRLNKIFADATGQPLERIEKDTDRDYWMGPDEGIEYGLVGK 196

Query: 204 VLMS 207
           V+ +
Sbjct: 197 VVQT 200


>gi|260434315|ref|ZP_05788285.1| Clp protease [Synechococcus sp. WH 8109]
 gi|260412189|gb|EEX05485.1| Clp protease [Synechococcus sp. WH 8109]
          Length = 225

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 75/190 (39%), Positives = 115/190 (60%), Gaps = 19/190 (10%)

Query: 41  KERIVFV----------TGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG------- 83
           KERIV++            Q+   +  LI AQLL+LE +NP+K I  YINS G       
Sbjct: 30  KERIVYLGLPLFSDDDAKRQMGIDVTELIIAQLLYLEFDNPEKPIYFYINSTGTSWYSGD 89

Query: 84  --GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
             G  T   AI DT++++KPP+ T C+GQA    +++LSAG KG R ALP++ I+LHQP 
Sbjct: 90  AIGFETEAFAICDTLRYVKPPVHTICIGQAMGTAAVILSAGTKGQRAALPHSSIVLHQPR 149

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            G  GQA+DI+  A++++  K+ + EI   N G++ E++    DR   ++  +A ++G++
Sbjct: 150 SGARGQATDIQIRAKEVLHNKQAMLEILSTNTGRSVEDLSNDSDRMSYLTPQQAVEYGLI 209

Query: 202 DKVLMSRIDI 211
           D+VL SR D+
Sbjct: 210 DRVLSSRKDL 219


>gi|228017007|gb|ACP51830.1| ATP-dependent Clp protease proteolytic subunit [Pinus canariensis]
 gi|228017448|gb|ACP52264.1| ATP-dependent Clp protease proteolytic subunit [Pinus merkusii]
          Length = 196

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 67/172 (38%), Positives = 109/172 (63%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+   I   +A  +   +++L AE+  K+I  +IN PGG V  G+ ++
Sbjct: 22  DLYNRLYRERLLFLAQDINHEIANQLMGLMVYLSAEDANKDIFSFINCPGGSVIPGVGLF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           D MQ I P + T CMG AASMGS +L  GE   R ALP+AR+++HQP S  + G A+D  
Sbjct: 82  DMMQAIVPDVHTICMGVAASMGSFILIGGEMPKRIALPHARVMIHQPASSYYDGSAADFH 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             ++ +  ++  + + Y++  G+  E +++ L+RD  MSA+EA  +G+VD V
Sbjct: 142 NESKHVTMLRDYITKCYIERTGQPGEVIQRDLNRDVFMSATEAQAYGIVDVV 193


>gi|156598137|gb|ABU85333.1| clp protease proteolytic subunit [Elaeis oleifera]
          Length = 195

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 67/169 (39%), Positives = 110/169 (65%), Gaps = 1/169 (0%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           +RL +E ++F+  +++  ++  +   +++L  E+  +++ L+INSPGG V  G+AIYDTM
Sbjct: 24  NRLHREGLLFLGQEVDSEISNQLVGLMVYLSIEDDTRDLYLFINSPGGWVIPGIAIYDTM 83

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIERHA 155
           QF+ P + T CMG AASMGS +L  GE   R ALP+AR+++HQP+  F   QA +    A
Sbjct: 84  QFVPPDVHTICMGLAASMGSFILVGGEITKRLALPHARVMIHQPASSFYEAQAGEFILEA 143

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           ++++K++  L ++YV+  G     V + ++RD  MSA+EA   G+VD V
Sbjct: 144 EELLKLRETLTKVYVQRTGNPLWVVSEDMERDVFMSATEAQVHGIVDLV 192


>gi|18414804|ref|NP_567521.1| ATP-dependent Clp protease proteolytic subunit, putative
           [Arabidopsis thaliana]
 gi|75301253|sp|Q8LB10|CLPR4_ARATH RecName: Full=ATP-dependent Clp protease proteolytic
           subunit-related protein 4, chloroplastic; Short=ClpR4;
           Flags: Precursor
 gi|21593086|gb|AAM65035.1| ATP-dependent Clp protease proteolytic subunit ClpR4, putative
           [Arabidopsis thaliana]
 gi|26450085|dbj|BAC42162.1| putative ClpP protease complex subunit ClpR4 [Arabidopsis thaliana]
          Length = 305

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 73/180 (40%), Positives = 110/180 (61%), Gaps = 8/180 (4%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG--------GV 85
           D+ S L K RIV++   +   +  LI A+ L+L+ E+ +K I LYINS G        G 
Sbjct: 105 DLASYLFKNRIVYLGMSLVPSVTELILAEFLYLQYEDEEKPIYLYINSTGTTKNGEKLGY 164

Query: 86  VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS 145
            T   AIYD M ++KPPI T C+G A    +LLL+AG KG R ALP++ I++ QP   F 
Sbjct: 165 DTEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLTAGAKGNRSALPSSTIMIKQPIARFQ 224

Query: 146 GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           GQA+D+E   ++I  IK  + ++Y K+ GK+ E++E  + R    S +EA ++G++DKV+
Sbjct: 225 GQATDVEIARKEIKHIKTEMVKLYSKHIGKSPEQIEADMKRPKYFSPTEAVEYGIIDKVV 284


>gi|309322383|ref|YP_003934463.1| ATP-dependent Clp protease proteolytic subunit [Cathaya
           argyrophylla]
 gi|307683309|dbj|BAJ19616.1| ATP-dependent Clp protease proteolytic subunit [Cathaya
           argyrophylla]
          Length = 196

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 67/172 (38%), Positives = 108/172 (62%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+   I   +A  +   +++L AE+  K+I  ++N PGG V +G+ ++
Sbjct: 22  DLYNRLYRERLLFLAQDINPEIANQVTGLMVYLSAEDADKDIFSFLNCPGGSVISGVGLF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG-FSGQASDIE 152
           D MQ I P + T CMG AASMGS +L  GE   R A P+ARI++HQPS   + G A++  
Sbjct: 82  DIMQVIVPDVHTICMGVAASMGSFVLIGGEISKRIAFPHARIMIHQPSSSYYDGPAAEFL 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
              + +  ++  + + Y++  GK+ E +++ LDRD  MSA EA  +G+VD V
Sbjct: 142 NEVKHVTMLRDYITKCYIERTGKSGEVIQRDLDRDVYMSAREARAYGIVDAV 193


>gi|19698857|gb|AAL91164.1| unknown protein [Arabidopsis thaliana]
 gi|23197684|gb|AAN15369.1| unknown protein [Arabidopsis thaliana]
          Length = 305

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 73/180 (40%), Positives = 110/180 (61%), Gaps = 8/180 (4%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG--------GV 85
           D+ S L K RIV++   +   +  LI A+ L+L+ E+ +K I LYINS G        G 
Sbjct: 105 DLASYLFKNRIVYLGMSLVPSVTELILAEFLYLQYEDEKKPIYLYINSTGTTKNGEKLGY 164

Query: 86  VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS 145
            T   AIYD M ++KPPI T C+G A    +LLL+AG KG R ALP++ I++ QP   F 
Sbjct: 165 DTEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLTAGAKGNRSALPSSTIMIKQPIARFQ 224

Query: 146 GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           GQA+D+E   ++I  IK  + ++Y K+ GK+ E++E  + R    S +EA ++G++DKV+
Sbjct: 225 GQATDVEIARKEIKHIKTEMVKLYSKHIGKSPEQIEADMKRPKYFSPTEAVEYGIIDKVV 284


>gi|254409400|ref|ZP_05023181.1| Clp protease [Microcoleus chthonoplastes PCC 7420]
 gi|196183397|gb|EDX78380.1| Clp protease [Microcoleus chthonoplastes PCC 7420]
          Length = 223

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 74/176 (42%), Positives = 109/176 (61%), Gaps = 9/176 (5%)

Query: 41  KERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------GVVTAGMA 91
            ERIV++   +   +  LI A+LL+L+ +NP K I +YINS G         G  T   A
Sbjct: 36  NERIVYLGLPLVPQVTELIVAELLYLQYDNPDKPIKIYINSTGTSRYDGEPIGFETEAFA 95

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           I DTM +I+PPI T C+G A  M ++LLSAG KG R +LPNA I+LHQP     GQA+DI
Sbjct: 96  ICDTMNYIQPPIHTICIGSAMGMAAMLLSAGTKGCRASLPNASIVLHQPKSYARGQATDI 155

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           +  A++++  K  +  I  KN G++ E++ K ++R   M+  EA ++G++D+VL S
Sbjct: 156 QIRAKEVLANKITMMGILAKNTGQSAEKITKDMERMLYMTPYEAKEYGLIDRVLES 211


>gi|29565593|ref|NP_817171.1| ATP-dependent Clp protease proteolytic subunit [Pinus koraiensis]
 gi|237688459|ref|YP_002905078.1| ATP-dependent Clp protease proteolytic subunit [Picea sitchensis]
 gi|237688591|ref|YP_002905208.1| ATP-dependent Clp protease proteolytic subunit [Pinus gerardiana]
 gi|237688659|ref|YP_002905275.1| ATP-dependent Clp protease proteolytic subunit [Pinus krempfii]
 gi|324986358|ref|YP_004276230.1| ATP-dependent Clp protease proteolytic subunit [Pinus lambertiana]
 gi|68052195|sp|Q85X43|CLPP_PINKO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|29469692|gb|AAO74020.1| ATP-dependent protease subunit [Pinus koraiensis]
 gi|226875288|gb|ACO89027.1| ATP-dependent Clp protease proteolytic subunit [Picea sitchensis]
 gi|226876052|gb|ACO89308.1| ATP-dependent Clp protease proteolytic subunit [Pinus gerardiana]
 gi|226951117|gb|ACO94180.1| ATP-dependent Clp protease proteolytic subunit [Pinus krempfii]
 gi|228016125|gb|ACP50962.1| ATP-dependent Clp protease proteolytic subunit [Pinus sibirica]
 gi|228016182|gb|ACP51018.1| ATP-dependent Clp protease proteolytic subunit [Pinus squamata]
 gi|228016247|gb|ACP51082.1| ATP-dependent Clp protease proteolytic subunit [Pinus strobus]
 gi|228016623|gb|ACP51452.1| ATP-dependent Clp protease proteolytic subunit [Pinus albicaulis]
 gi|228016756|gb|ACP51583.1| ATP-dependent Clp protease proteolytic subunit [Pinus armandii]
 gi|228016879|gb|ACP51704.1| ATP-dependent Clp protease proteolytic subunit [Pinus ayacahuite]
 gi|228017126|gb|ACP51947.1| ATP-dependent Clp protease proteolytic subunit [Pinus cembra]
 gi|228017247|gb|ACP52066.1| ATP-dependent Clp protease proteolytic subunit [Pinus flexilis]
 gi|228017313|gb|ACP52131.1| ATP-dependent Clp protease proteolytic subunit [Pinus lambertiana]
 gi|228017506|gb|ACP52321.1| ATP-dependent Clp protease proteolytic subunit [Pinus monticola]
 gi|228017569|gb|ACP52383.1| ATP-dependent Clp protease proteolytic subunit [Pinus parviflora
           var. pentaphylla]
 gi|228017633|gb|ACP52446.1| ATP-dependent Clp protease proteolytic subunit [Pinus peuce]
 gi|257042530|gb|ACV32804.1| ATP-dependent Clp protease proteolytic subunit [Pinus monticola]
 gi|257042558|gb|ACV32831.1| ATP-dependent Clp protease proteolytic subunit [Pinus monticola]
 gi|257042587|gb|ACV32859.1| ATP-dependent Clp protease proteolytic subunit [Pinus monticola]
 gi|257042617|gb|ACV32888.1| ATP-dependent Clp protease proteolytic subunit [Pinus monticola]
 gi|257042645|gb|ACV32915.1| ATP-dependent Clp protease proteolytic subunit [Pinus monticola]
 gi|257042673|gb|ACV32942.1| ATP-dependent Clp protease proteolytic subunit [Pinus monticola]
 gi|257042702|gb|ACV32970.1| ATP-dependent Clp protease proteolytic subunit [Pinus monticola]
 gi|257042730|gb|ACV32997.1| ATP-dependent Clp protease proteolytic subunit [Pinus monticola]
 gi|257042757|gb|ACV33023.1| ATP-dependent Clp protease proteolytic subunit [Pinus monticola]
 gi|257042785|gb|ACV33050.1| ATP-dependent Clp protease proteolytic subunit [Pinus monticola]
 gi|323514207|gb|ADX89754.1| ATP-dependent Clp protease proteolytic subunit [Pinus lambertiana]
          Length = 196

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 68/172 (39%), Positives = 107/172 (62%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+   I   +A  +   +++L AE+  K+I  +IN PGG V  G+ ++
Sbjct: 22  DLYNRLYRERLLFLAQDINHEIANQLMGLMVYLSAEDANKDIFSFINCPGGSVIPGVGLF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           D MQ I P + T CMG AASMGS +L  GE   R ALP+AR+++HQP S  + G A++  
Sbjct: 82  DMMQVIVPNVHTICMGVAASMGSFILIGGEITKRMALPHARVMIHQPASSYYDGPAAEFH 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A+ I  ++  + + Y++      E +++ LDRD  MSA+EA  +G+VD V
Sbjct: 142 NEAKHITMLRNYITKCYIERTDNPEEVIQRDLDRDVFMSATEARAYGIVDTV 193


>gi|69214839|gb|AAZ03802.1| ATP-depedent Clp protease proteolytic subunit [Ranunculus
           macranthus]
          Length = 195

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 67/169 (39%), Positives = 107/169 (63%), Gaps = 1/169 (0%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           +RL +ER++F+   ++  ++  +   +++L  E+  +++ L+INSPGG V  G+AIYDTM
Sbjct: 24  NRLHRERLLFLGQGVDSEISNQLIGLMVYLSLEDETRDLFLFINSPGGWVVPGVAIYDTM 83

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIERHA 155
           QF+ P + T CMG AASMGS LL  GE   R A P+AR+++HQP+  F   Q  +    A
Sbjct: 84  QFVPPDVHTICMGLAASMGSFLLVGGEITKRIAFPHARVMIHQPASSFYEAQTGEFVLEA 143

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           ++++K++  L  +YV+  G     V + ++RD  MSA+EA   G+VD V
Sbjct: 144 EELLKLRETLTRVYVQRTGNPLWVVSEDMERDVFMSATEAQAHGIVDFV 192


>gi|42527889|ref|NP_972987.1| ATP-dependent Clp protease proteolytic subunit [Treponema denticola
           ATCC 35405]
 gi|67460503|sp|Q73JM9|CLPP2_TREDE RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|41818934|gb|AAS12906.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Treponema
           denticola ATCC 35405]
 gi|325474892|gb|EGC78078.1| ATP-dependent Clp protease proteolytic subunit 2 [Treponema
           denticola F0402]
          Length = 200

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 69/191 (36%), Positives = 115/191 (60%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           E+ N+      +  + L  R + + G+I   ++  I  QLL +E+ +  K I +YI+SPG
Sbjct: 10  EKKNKTNDDDALMQKFLNTRQIILAGEINKELSEKIVRQLLLMESLSATKPIYIYIDSPG 69

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           G   AG AI+D ++FIK P+ T  MG  AS  S++L A  K  RF +PN+  L+HQP  G
Sbjct: 70  GDADAGFAIFDMIRFIKAPVYTIGMGLVASAASIILLAASKERRFGMPNSHYLIHQPLSG 129

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
             G A++IE HA+++ K++ ++N++  +  G   ++V K  DRD  ++A E+ ++G++ K
Sbjct: 130 IKGVATEIEIHAKELEKMRVKINKLIAEETGTDEKKVAKDTDRDCWLNAKESVEYGLISK 189

Query: 204 VLMSRIDIEEK 214
           +  +R DI EK
Sbjct: 190 IAKNRKDIPEK 200


>gi|186681466|ref|YP_001864662.1| ATP-dependent Clp protease-like protein [Nostoc punctiforme PCC
           73102]
 gi|186463918|gb|ACC79719.1| peptidase S14, ClpP [Nostoc punctiforme PCC 73102]
          Length = 220

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 72/174 (41%), Positives = 111/174 (63%), Gaps = 9/174 (5%)

Query: 41  KERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------GVVTAGMA 91
           KERIV++   +   +  LI A+LLFL++++P+K I +YINS G         G  T   A
Sbjct: 32  KERIVYIGMPLVPAVTELIVAELLFLQSDDPEKPIKIYINSTGTSGYSGEPIGFETEAFA 91

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYDTM++IKPPI T C+G A  M ++LLSAG KG R +LP++ I+LHQP     GQA+DI
Sbjct: 92  IYDTMRYIKPPIHTICVGSAMGMSAMLLSAGTKGCRASLPHSSIILHQPKSYAQGQATDI 151

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           +  A++++  K  L +I  +  G+  E++ K +DR   ++  EA ++G++D+V 
Sbjct: 152 QIRAREVLVNKGALVDILHQTTGQPREKITKDMDRLLYLTPYEAKEYGLIDRVF 205


>gi|228016444|gb|ACP51276.1| ATP-dependent Clp protease proteolytic subunit [Pinus torreyana
           subsp. insularis]
 gi|228016508|gb|ACP51339.1| ATP-dependent Clp protease proteolytic subunit [Pinus torreyana
           subsp. torreyana]
          Length = 196

 Score =  142 bits (357), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 67/172 (38%), Positives = 108/172 (62%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+   I   +A  +   +++L AE+  K+I  +IN PGG V  G+ ++
Sbjct: 22  DLYNRLYRERLLFLAQDINHEIANQLIGLMVYLSAEDANKDIFSFINCPGGSVIPGVGLF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           D MQ I P + T CMG AASMGS +L  GE   R ALP+AR+++HQP S  + G A+D  
Sbjct: 82  DMMQAIVPDVHTICMGVAASMGSFILIGGEMPKRIALPHARVMIHQPASSYYDGSAADFH 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             ++ +  ++  + + Y++  G   E +++ L+RD  MSA+EA  +G+VD V
Sbjct: 142 NESKHVTMLRDYITKCYIERTGHPGEVIQRDLNRDVFMSATEAQAYGIVDVV 193


>gi|260905350|ref|ZP_05913672.1| putative Clp protease proteolytic subunit [Brevibacterium linens
           BL2]
          Length = 193

 Score =  142 bits (357), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 79/188 (42%), Positives = 119/188 (63%), Gaps = 1/188 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VV+++  GE+  D+YS LL  RI+++   I+D +A  I AQLL LEA + +  I LY
Sbjct: 6   IPNVVDRSGGGEKIVDVYSHLLGNRIIYLGVPIDDGVANTIIAQLLHLEASSRELPIQLY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG +TA  AIYD M  I  P++T C+GQAA+  ++LL+AGE G R  L +AR +L 
Sbjct: 66  INSPGGSLTAMTAIYDAMHHIGAPVATICVGQAAADAAVLLAAGEPGQRSMLEHARAVLR 125

Query: 139 QPSG-GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP   G  G   D+   A +I + +R +  +  K  G++ ++    LDRD +++A  A D
Sbjct: 126 QPHAEGARGAIPDLIVAADEIARQRRDVEAMLAKGTGRSVDQTHADLDRDLVLNAQAARD 185

Query: 198 WGVVDKVL 205
           +G+VD++L
Sbjct: 186 FGLVDQIL 193


>gi|309322359|ref|YP_003934209.1| ATP-dependent Clp protease proteolytic subunit [Cedrus deodara]
 gi|307683285|dbj|BAJ19593.1| ATP-dependent Clp protease proteolytic subunit [Cedrus deodara]
          Length = 196

 Score =  142 bits (357), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 66/172 (38%), Positives = 109/172 (63%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+   I   +A  +   +++L AE+  K++  ++N PGG V  G+ ++
Sbjct: 22  DLYNRLYRERLLFLAQDINHEIANQLMGLMVYLSAEDANKDMFSFLNCPGGSVIPGVGLF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           D MQ I P + T CMG AASMGS +L  GE   R ALP+ARI++HQP S  + G A+D  
Sbjct: 82  DVMQIIVPDVHTICMGVAASMGSFILIGGEITKRIALPHARIMIHQPASSYYDGPAADFH 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           + ++ +  ++  + + Y++  G   E +++ L+RD  MSA+EA  +G+VD V
Sbjct: 142 KESKHVTMLRDYITKCYIERTGNPGEIIQRDLNRDVFMSATEAQAYGIVDAV 193


>gi|156598329|gb|ABU85425.1| clp protease proteolytic subunit [Musa acuminata]
          Length = 195

 Score =  142 bits (357), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 66/169 (39%), Positives = 109/169 (64%), Gaps = 1/169 (0%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           +RL +ER++F+  ++   ++  I   +++L  E+  +++ L+INSPGG V +G+AIYDTM
Sbjct: 24  NRLHRERLLFLGQEVNSEISNQIVGLMVYLSIEDNTRDLFLFINSPGGWVVSGIAIYDTM 83

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIERHA 155
           QF+ P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F   +  +     
Sbjct: 84  QFVPPDVHTICMGLAASMGSFILIGGEITKRLAFPHARVMIHQPASSFYESRTGEFVLEM 143

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           ++++K++  L ++YV+  GK    V + ++RD  MSA+EA   G+VD V
Sbjct: 144 EELLKLRETLTKVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLV 192


>gi|296388170|ref|ZP_06877645.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa PAb1]
          Length = 201

 Score =  142 bits (357), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 71/172 (41%), Positives = 112/172 (65%), Gaps = 1/172 (0%)

Query: 40  LKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           LK R VFVTG +++ MA  +  QL  L A    + I +++NSPGG V +G  I+D ++FI
Sbjct: 26  LKVRKVFVTGGVDEKMAKDVVQQLHIL-ASISDEPIYMFVNSPGGHVESGDMIFDAIRFI 84

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
            P +     G  AS G+L+ +A +K  R++LPN R LLHQPSGG  G AS+IE + ++IV
Sbjct: 85  TPKVIMIGSGSVASAGALIYAAADKENRYSLPNTRFLLHQPSGGIQGPASNIEIYRREIV 144

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           ++K RL+ I+ +  G+T E++    +RD  ++A EA  +G+V+K+++S  +I
Sbjct: 145 RMKERLDRIFAEATGQTPEKISADTERDFWLNAEEAVQYGLVNKIIVSEREI 196


>gi|228015924|gb|ACP50764.1| ATP-dependent Clp protease proteolytic subunit [Pinus taeda]
 gi|228016306|gb|ACP51140.1| ATP-dependent Clp protease proteolytic subunit [Pinus ponderosa]
 gi|228016819|gb|ACP51645.1| ATP-dependent Clp protease proteolytic subunit [Pinus attenuata]
 gi|228017185|gb|ACP52005.1| ATP-dependent Clp protease proteolytic subunit [Pinus leiophylla
           var. chihuahuana]
          Length = 196

 Score =  142 bits (357), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 67/172 (38%), Positives = 108/172 (62%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+   I   +A  +   +++L AE+  K+I  +IN PGG V  G+ ++
Sbjct: 22  DLYNRLYRERLLFLAQDINHEIANQLMGLMVYLSAEDANKDIFSFINCPGGSVIPGVGLF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           D MQ I P + T CMG AASMGS +L  GE   R ALP+AR+++HQP S  + G A+D  
Sbjct: 82  DMMQAIVPDVHTICMGVAASMGSFILIGGEMPKRIALPHARVMIHQPASSYYDGSAADFH 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             ++ +  ++  + + Y++  G   E +++ L+RD  MSA+EA  +G+VD V
Sbjct: 142 NESKHVTMLRDYITKCYIERTGHPGEVIQRDLNRDVFMSATEAQAYGIVDVV 193


>gi|172036825|ref|YP_001803326.1| ATP-dependent Clp protease-like protein [Cyanothece sp. ATCC 51142]
 gi|171698279|gb|ACB51260.1| ATP-dependent Clp protease, proteolytic subunit [Cyanothece sp.
           ATCC 51142]
          Length = 226

 Score =  142 bits (357), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 76/193 (39%), Positives = 118/193 (61%), Gaps = 19/193 (9%)

Query: 34  DIYSRLLKERIVF----------VTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           D+ S LLKERI++          +  Q+   +  LI AQLL+L+ +NP+K I  YINS G
Sbjct: 22  DLESLLLKERIIYLGLPLFSSDEIKQQVGIDVTQLIIAQLLYLQFDNPEKPIYFYINSTG 81

Query: 84  ---------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
                    G  T   AI DTM ++KPPI T C+GQA    +++LSAG KG R +LP+A 
Sbjct: 82  TSWYTGDAIGFETEAFAICDTMNYVKPPIHTICIGQAMGTAAMILSAGTKGCRASLPHAT 141

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I+L+Q   G  GQA+DI+  A++++  K+ + +I  +N G+T E++ K +DR   ++  +
Sbjct: 142 IVLNQNRSGARGQATDIQIRAKEVLHNKQTMLQILSENTGQTVEKIAKDIDRTFYLTPEK 201

Query: 195 ACDWGVVDKVLMS 207
           A ++G++D+VL S
Sbjct: 202 AKEYGLIDRVLES 214


>gi|324986501|ref|YP_004276371.1| ATP-dependent Clp protease proteolytic subunit [Pinus nelsonii]
 gi|323522689|gb|ADX94937.1| ATP-dependent Clp protease proteolytic subunit [Pinus nelsonii]
          Length = 196

 Score =  142 bits (357), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 68/172 (39%), Positives = 107/172 (62%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+   I   +A  +   +++L AE+  K+I  +IN PGG V  G+ ++
Sbjct: 22  DLYNRLYRERLLFLAQDINHEIANQLMGLMVYLSAEDANKDIFSFINCPGGSVIPGVGLF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           D MQ I P + T CMG AASMGS +L  GE   R ALP+AR+++HQP S  + G A++  
Sbjct: 82  DMMQVIVPNVHTICMGVAASMGSFILIGGEITKRMALPHARVMIHQPASSYYDGPAAEFH 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A+ I  ++  + + Y++      E +++ LDRD  MSA+EA  +G+VD V
Sbjct: 142 NEAKHITMLRTYITKCYIERTDNPEEVIQRDLDRDVFMSATEAQAYGIVDTV 193


>gi|328947527|ref|YP_004364864.1| ATP-dependent Clp protease proteolytic subunit [Treponema
           succinifaciens DSM 2489]
 gi|328447851|gb|AEB13567.1| ATP-dependent Clp protease proteolytic subunit [Treponema
           succinifaciens DSM 2489]
          Length = 216

 Score =  142 bits (357), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 72/174 (41%), Positives = 111/174 (63%), Gaps = 1/174 (0%)

Query: 38  RLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97
           + LK R + ++G+I + +A  I  QLL LEA+N  K I +YI+SPGG V AG AI+DT++
Sbjct: 43  KFLKTRQILLSGEICEELAEKIIRQLLILEADN-DKPIYIYIDSPGGDVYAGFAIFDTIR 101

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
           FI  P+     G  AS  +L+L +  K  R  LP++  L+HQPS G  G A+DIE HA +
Sbjct: 102 FINAPVYIIGTGLIASAAALILLSVPKERRLGLPHSSYLIHQPSSGMKGVATDIEIHAAE 161

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           + K + ++NEI  +  G + E+V K  DRD+ +++ EA  +G++ KV+ +R D+
Sbjct: 162 LAKTRTKINEIISEQTGTSLEKVSKDTDRDYWLNSEEAVQYGLICKVITNRKDL 215


>gi|224125072|ref|XP_002329885.1| predicted protein [Populus trichocarpa]
 gi|222871122|gb|EEF08253.1| predicted protein [Populus trichocarpa]
          Length = 279

 Score =  142 bits (357), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 70/178 (39%), Positives = 111/178 (62%), Gaps = 1/178 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           DI++ L +ERI+F+   I++  +  I A +L+L+  +  K + LYIN PGG +T  +AIY
Sbjct: 89  DIWNALYRERILFIGQNIDEEFSNQILATMLYLDTIDDSKRMYLYINGPGGDLTPSLAIY 148

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           DTMQ +K P+ T C+G A ++   LL+AGEKG R A+P +RI L  P+G   GQA DI  
Sbjct: 149 DTMQSLKSPVGTHCVGFAYNLAGFLLTAGEKGNRSAMPLSRIALQSPAGAARGQADDICN 208

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM-SRID 210
            A ++++I+  L     K  G+ +E++ K L R     A +A ++G++D+++   RID
Sbjct: 209 EANELLRIRDYLYNELSKKTGQPFEKISKDLSRMKRFEAQDALEYGLIDRIIRPPRID 266


>gi|320012153|gb|ADW07003.1| Endopeptidase Clp [Streptomyces flavogriseus ATCC 33331]
          Length = 211

 Score =  141 bits (356), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 78/193 (40%), Positives = 122/193 (63%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G R+ D Y++LL ERIVF+   ++D  AT + AQ ++LE  +P + +SL
Sbjct: 9   VLPEFTERTAHGTRNTDPYAKLLSERIVFLGTPVDDTAATDLVAQFMYLEHADPDRPLSL 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG   A  AIYDTM F+   + TFC+GQA +  ++LL+AG  G R ALP AR+L+
Sbjct: 69  YINSPGGSFDAMTAIYDTMGFLACEVETFCLGQAGAAAAVLLAAGSPGRRHALPGARVLI 128

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
            QP+      GQ SD+E  A+++ + +  L  +  ++ G++ E +   ++RD I+ A  A
Sbjct: 129 QQPALDEPVQGQPSDLEIRARELTRERELLTSLLARHTGRSTERISADIERDTILDAEAA 188

Query: 196 CDWGVVDKVLMSR 208
             +G+VD V+ +R
Sbjct: 189 LAFGLVDHVMENR 201


>gi|224551502|gb|ACN54193.1| Clp-P protease subunit [Triticum aestivum]
          Length = 266

 Score =  141 bits (356), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 62/172 (36%), Positives = 109/172 (63%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+ + LL  RI+F+   +   +A  + +QL+ L A + + +I +Y+N PGG + + +AIY
Sbjct: 91  DLATVLLGNRIIFIGQYVNSQVAQRVISQLVTLSAIDEEGDILIYLNCPGGSLYSILAIY 150

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M +I P + T C G  AS  +++L+ GEKGMR+A+PNAR+++HQP GG  G   ++ R
Sbjct: 151 DCMSWISPKVGTVCFGVVASQAAIILAGGEKGMRYAMPNARVMIHQPQGGSEGNTEEVRR 210

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
              + +  + ++++++    G+  + V +  +RD  MS+SEA D+G+VD +L
Sbjct: 211 QVGETIYARDKVDKMFASFTGRPIDIVRQWTERDRFMSSSEAMDFGLVDALL 262


>gi|69214833|gb|AAZ03799.1| ATP-depedent Clp protease proteolytic subunit [Acorus americanus]
          Length = 195

 Score =  141 bits (356), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 65/169 (38%), Positives = 108/169 (63%), Gaps = 1/169 (0%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           +RL +ER++F+  +++  ++  +   +++L  E+  ++  L+INSPGG V  G+ +YDTM
Sbjct: 24  NRLHRERLLFLGQELDSEISNQLVGLMVYLSIEDKTRDFFLFINSPGGWVIPGIGLYDTM 83

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIERHA 155
           QF+ P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F   QA +    A
Sbjct: 84  QFVPPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQAGEFVLEA 143

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           ++++K++  L  +YV+  GK    V + ++RD  +SA+EA   G+VD V
Sbjct: 144 EELLKLRETLTRVYVQRTGKPLWVVSEDMERDVFLSATEAQAHGIVDLV 192


>gi|330837420|ref|YP_004412061.1| ATP-dependent Clp protease proteolytic subunit ClpP [Spirochaeta
           coccoides DSM 17374]
 gi|329749323|gb|AEC02679.1| ATP-dependent Clp protease proteolytic subunit ClpP [Spirochaeta
           coccoides DSM 17374]
          Length = 246

 Score =  141 bits (356), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 70/171 (40%), Positives = 107/171 (62%)

Query: 38  RLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97
           +LLK R + ++G+I+   A  +  QLL +EAE+    + LYINSPGG V AG AIYD ++
Sbjct: 73  KLLKTRSILLSGEIDKECADRLIRQLLVMEAEDGDAPVYLYINSPGGDVDAGYAIYDMIR 132

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
           F+  PI+   MG  AS  +L+L +     R  LP++  L+HQP  G  G A+DIE HA+ 
Sbjct: 133 FVSCPITIIGMGLVASAAALILLSVPADRRVGLPDSTYLIHQPLSGMKGVATDIEIHARQ 192

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           I K++ +L+ +     GK+ EEV +  +RDH + A EA D+G++ +++ SR
Sbjct: 193 IEKLRAKLDGVIAAATGKSVEEVAEDTERDHWLDAGEARDYGLISRIVSSR 243


>gi|15598522|ref|NP_252016.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa PAO1]
 gi|107102858|ref|ZP_01366776.1| hypothetical protein PaerPA_01003926 [Pseudomonas aeruginosa PACS2]
 gi|116051341|ref|YP_789826.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|218890478|ref|YP_002439342.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa LESB58]
 gi|254236288|ref|ZP_04929611.1| hypothetical protein PACG_02259 [Pseudomonas aeruginosa C3719]
 gi|254242013|ref|ZP_04935335.1| hypothetical protein PA2G_02739 [Pseudomonas aeruginosa 2192]
 gi|313108675|ref|ZP_07794673.1| putative ATP-dependent Clp protease proteolytic subunit
           [Pseudomonas aeruginosa 39016]
 gi|18203008|sp|Q9HYR9|CLPP2_PSEAE RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|9949457|gb|AAG06714.1|AE004755_1 probable Clp-family ATP-dependent protease [Pseudomonas aeruginosa
           PAO1]
 gi|115586562|gb|ABJ12577.1| putative ATP-dependent Clp protease proteolytic subunit
           [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126168219|gb|EAZ53730.1| hypothetical protein PACG_02259 [Pseudomonas aeruginosa C3719]
 gi|126195391|gb|EAZ59454.1| hypothetical protein PA2G_02739 [Pseudomonas aeruginosa 2192]
 gi|218770701|emb|CAW26466.1| probable Clp-family ATP-dependent protease [Pseudomonas aeruginosa
           LESB58]
 gi|310881175|gb|EFQ39769.1| putative ATP-dependent Clp protease proteolytic subunit
           [Pseudomonas aeruginosa 39016]
          Length = 201

 Score =  141 bits (356), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 71/172 (41%), Positives = 111/172 (64%), Gaps = 1/172 (0%)

Query: 40  LKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           LK R VFVTG +++ MA  +  QL  L A      I +++NSPGG V +G  I+D ++FI
Sbjct: 26  LKVRKVFVTGGVDEKMAKDVVQQLHIL-ASISDDPIYMFVNSPGGHVESGDMIFDAIRFI 84

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
            P +     G  AS G+L+ +A +K  R++LPN R LLHQPSGG  G AS+IE + ++IV
Sbjct: 85  TPKVIMIGSGSVASAGALIYAAADKENRYSLPNTRFLLHQPSGGIQGPASNIEIYRREIV 144

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           ++K RL+ I+ +  G+T E++    +RD  ++A EA  +G+V+K+++S  +I
Sbjct: 145 RMKERLDRIFAEATGQTPEKISADTERDFWLNAEEAVQYGLVNKIIVSEREI 196


>gi|163785571|ref|ZP_02180137.1| ATP-dependent Clp protease proteolytic subunit [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159879161|gb|EDP73099.1| ATP-dependent Clp protease proteolytic subunit [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 97

 Score =  141 bits (355), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 66/96 (68%), Positives = 81/96 (84%)

Query: 6   CAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF 65
            +K D + +   LVP+VVEQT RGER+YDIYSRLLK+RIV +   I+DH+A LI AQLLF
Sbjct: 2   SSKNDIDRIVSQLVPIVVEQTPRGERAYDIYSRLLKDRIVLLGFPIDDHIANLIVAQLLF 61

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP 101
           LE+E+P+K+I LYINSPGGVVTAG+AIYDTMQ+IKP
Sbjct: 62  LESEDPEKDIYLYINSPGGVVTAGLAIYDTMQYIKP 97


>gi|228017379|gb|ACP52196.1| ATP-dependent Clp protease proteolytic subunit [Larix occidentalis]
          Length = 196

 Score =  141 bits (355), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 66/172 (38%), Positives = 108/172 (62%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+   I   +A  +   +++L AE+  K++  ++N PGG V  G+ I+
Sbjct: 22  DLYNRLYRERLLFLAQDINHEIANQLMGLMVYLSAEDANKDMFSFLNCPGGSVIPGVGIF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           D MQ I P + T CMG AASMGS +L  GE   R ALP+AR+++HQP S  + G A+D  
Sbjct: 82  DVMQIIVPDVHTICMGVAASMGSFILIGGEITKRIALPHARVMIHQPASTYYDGPAADFH 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             ++ +  ++  + + Y++  G   E +++ L+RD  MSA+EA  +G+VD V
Sbjct: 142 NESKHVTMLRDYITKCYIERTGTPGEVIQRDLNRDVFMSATEAQAYGIVDAV 193


>gi|68164829|ref|YP_247625.1| ATP-dependent Clp protease proteolytic subunit [Cucumis sativus]
 gi|67511424|emb|CAJ00784.1| ATP-dependent Clp protease proteolytic subunit [Cucumis sativus]
          Length = 195

 Score =  141 bits (355), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 64/172 (37%), Positives = 109/172 (63%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL ++R++F+   + + ++  I   +++L  E+  K+  L+INSPGG V  G+ ++
Sbjct: 22  DLYNRLYRQRLLFLGQDVNNEISNQIMGLMVYLSIEDGTKDQYLFINSPGGSVIPGVGLF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS-GQASDIE 152
           DTMQF+ P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  FS G+  +  
Sbjct: 82  DTMQFVSPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFSKGKTGEFV 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             + +++ ++  + ++YV+  GK    + + ++RD  MSA EA   G+VD V
Sbjct: 142 LESTELLNLRETITKVYVQRTGKPLWVIPEDMERDVFMSAPEAQAHGIVDLV 193


>gi|218245804|ref|YP_002371175.1| ATP-dependent Clp protease-like protein [Cyanothece sp. PCC 8801]
 gi|257058850|ref|YP_003136738.1| ATP-dependent Clp protease-like protein [Cyanothece sp. PCC 8802]
 gi|16506759|gb|AAL23932.1|AF423176_1 hypothetical protein [Cyanothece sp. PCC 8801]
 gi|218166282|gb|ACK65019.1| Endopeptidase Clp [Cyanothece sp. PCC 8801]
 gi|256589016|gb|ACU99902.1| Endopeptidase Clp [Cyanothece sp. PCC 8802]
          Length = 226

 Score =  141 bits (355), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 79/209 (37%), Positives = 122/209 (58%), Gaps = 24/209 (11%)

Query: 23  VEQTNRGERSY-----DIYSRLLKERIVF----------VTGQIEDHMATLICAQLLFLE 67
           V+    G+ S+     D+ S +LKERI++          V  Q+   +  LI AQLL+L+
Sbjct: 6   VQSAYYGDTSFRTPPPDLESLMLKERIIYLGMPLFSSDDVKQQVGIDVTQLIIAQLLYLQ 65

Query: 68  AENPQKEISLYINSPG---------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLL 118
            ++P K I  YINS G         G  T   AI DTM ++KPPI T C+GQA    +++
Sbjct: 66  FDDPDKPIYFYINSTGTSWYTGDAIGFETEAFAICDTMNYVKPPIHTICIGQAMGTAAMI 125

Query: 119 LSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYE 178
           LSAG KG R +LP+A I+L+Q   G  GQA+DI+  A++++  K+ + EI+ KN G+  E
Sbjct: 126 LSAGTKGCRASLPHATIVLNQNRSGARGQATDIQIRAKEVLSNKQTMLEIFSKNTGQPVE 185

Query: 179 EVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           ++ K  DR   ++  +A ++G++D+VL S
Sbjct: 186 KIAKDTDRTFYLTPQQAKEYGLIDRVLES 214


>gi|166235817|gb|ABY85720.1| ATP-dependent protease proteolytic subunit [Silene pseudoatocion]
          Length = 196

 Score =  141 bits (355), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 65/172 (37%), Positives = 107/172 (62%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  +++  ++  +   +++L  E+  K++ L+INSPGG V  G+AIY
Sbjct: 22  DVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF++P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F   Q  +  
Sbjct: 82  DTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  L  +YV+  GK    V + ++R        A   G+VD V
Sbjct: 142 LEAEELLKLRETLTRVYVQRTGKPIWVVSEDMERXXXXXXXXAQAHGIVDLV 193


>gi|255078128|ref|XP_002502644.1| predicted protein [Micromonas sp. RCC299]
 gi|226517909|gb|ACO63902.1| predicted protein [Micromonas sp. RCC299]
          Length = 279

 Score =  141 bits (355), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 78/194 (40%), Positives = 120/194 (61%), Gaps = 5/194 (2%)

Query: 19  VPMVVEQTNRGERSY---DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA-ENPQKE 74
           VP V  +T   E S+   DI++ L +ERIV+V   I++ +   + A +L+L++ E   K+
Sbjct: 83  VPRVPYKTPN-ENSWQWVDIWNCLYRERIVWVGQTIDEELGNQLVATMLYLDSIEKGGKD 141

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I LYIN+ GG V   MAI DTM +IK  +     G A +MG +LL+ G KG R ALPN  
Sbjct: 142 IYLYINTEGGDVVPTMAILDTMGYIKSDVGCVGFGSARAMGGMLLANGAKGKRAALPNTC 201

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I+LH P+G   G ASDI    ++++KI+ ++N++  +  G+  E+V + + RD  ++A +
Sbjct: 202 IMLHHPAGVARGSASDIHNEGKELLKIRAKINKMVSRATGQPEEKVHEDIRRDFHLTAEQ 261

Query: 195 ACDWGVVDKVLMSR 208
           A D+G+VDKVL  R
Sbjct: 262 ALDYGIVDKVLYKR 275


>gi|284052220|ref|ZP_06382430.1| ATP-dependent Clp protease proteolytic subunit [Arthrospira
           platensis str. Paraca]
 gi|291569211|dbj|BAI91483.1| ATP-dependent Clp protease proteolytic subunit [Arthrospira
           platensis NIES-39]
          Length = 213

 Score =  141 bits (355), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 71/189 (37%), Positives = 117/189 (61%), Gaps = 14/189 (7%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA-- 91
           +IY+RL +ERI+F+   +   +A  + + +L+L++++  K I +YINS G  V AGMA  
Sbjct: 23  NIYTRLSQERIIFLNQPLTTGVANSLVSSMLYLDSDDHNKPIYMYINSIGDPVLAGMANE 82

Query: 92  ------------IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
                       +YDTMQ IK  I T C+GQA  M +LLLS G KG R +LPN+ I L+ 
Sbjct: 83  SMGMMSVMAALAVYDTMQHIKSEIVTICLGQAVGMAALLLSCGSKGKRASLPNSMITLYN 142

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P  G  GQA+DI+  A++I+  +  + +I+ +N G+  E++ K ++R   M+  +A ++G
Sbjct: 143 PQTGTQGQATDIQVTAEEILSKRVLMMDIFHQNTGQPVEKLTKDMNRTFYMTPEQAKEYG 202

Query: 200 VVDKVLMSR 208
           ++D+VL ++
Sbjct: 203 IIDRVLTTQ 211


>gi|290489452|gb|ADD31110.1| clp protease proteolytic subunit protein [Ximenia americana]
          Length = 198

 Score =  140 bits (354), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 70/174 (40%), Positives = 110/174 (63%), Gaps = 3/174 (1%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           DIY++L +ER +F+   ++  ++  +   +++L  E+  K++ L+INSPGG V  G+AIY
Sbjct: 22  DIYNQLYRERFLFLGQAVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGIAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI--LLHQP-SGGFSGQASD 150
           DT+QF++P + T CMG AASMGS +L  GE   R A P+ARI  ++HQP S  F  Q  +
Sbjct: 82  DTIQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARIRVMIHQPASSYFEAQTGE 141

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
               A++++K++  L  +Y +  GK    V + ++RD  MSA+EA   G+VD V
Sbjct: 142 FILEAEELLKLRETLTGVYGQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLV 195


>gi|297703255|ref|XP_002828563.1| PREDICTED: putative ATP-dependent Clp protease proteolytic subunit,
           mitochondrial-like, partial [Pongo abelii]
          Length = 301

 Score =  140 bits (354), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 85/208 (40%), Positives = 122/208 (58%), Gaps = 17/208 (8%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           L L+P+VVEQT RGER+YDIYSRLL+ERIV V G I+D +A+L+ AQLLFL++E+ +K I
Sbjct: 63  LPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPI 122

Query: 76  SLYINS---------PGGVVTA-GMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
            +YINS         PG +V A G   +  +  +K  I  F   Q  S+     S G   
Sbjct: 123 HMYINSPGEQGLSWVPGALVRAHGQKAFLVVARLKQDIGGFAQAQPTSLKPEAQSPGRAA 182

Query: 126 MRFALPNARILLHQPSGGFS-------GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYE 178
                P    L   P+   S       GQA+DI   A++I+K+K++L  IY K+  +T +
Sbjct: 183 ECHLQPPCEGLTLMPTFTPSLPLDVPQGQATDIAIQAEEIMKLKKQLYNIYAKHTKQTLQ 242

Query: 179 EVEKTLDRDHIMSASEACDWGVVDKVLM 206
            +E  ++RD  MS  EA ++G++DKVL+
Sbjct: 243 VIESAMERDRYMSPMEAQEFGILDKVLV 270


>gi|148530030|gb|ABQ82222.1| ATP-dependent Clp protease proteolytic subunit 2 [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 189

 Score =  140 bits (354), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 74/180 (41%), Positives = 111/180 (61%), Gaps = 3/180 (1%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           ++ SRL  +R V V G I D +A  +  +LL L A      I +YINSPGG V +G  I+
Sbjct: 11  ELESRLFDQRKVLVFGAINDKLARDVTGRLLAL-AGASDHPIDVYINSPGGHVESGDTIH 69

Query: 94  DTMQFIK--PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           D ++F+    P+     G  AS G+L+ +AG    RF LPN R LLHQP GG  G A++I
Sbjct: 70  DMIRFVDSVAPVDVIGPGWVASAGALIFAAGNAQRRFCLPNTRFLLHQPMGGVRGPATEI 129

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           +  A++IVK++ RLN ++ +  G++YE+V +  DR++ MSA EA  +G+V +V+ +  DI
Sbjct: 130 DIEAREIVKMRERLNRLFARETGQSYEKVCRDTDRNYWMSADEAIAYGLVTRVINTLSDI 189


>gi|291060402|gb|ADD73137.1| Clp protease [Treponema pallidum subsp. pallidum str. Chicago]
          Length = 201

 Score =  140 bits (354), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 67/180 (37%), Positives = 112/180 (62%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
            + + L+ R + ++G+I   +A  I  QL  LE+ +  K I +Y++SPGG V AG AI+D
Sbjct: 22  FFQKFLETRQILLSGEISKDLAEGIVRQLFVLESLSVSKPIYMYVDSPGGDVDAGYAIFD 81

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            ++F+K P+ T  MG  AS G L+L A +K  RF L N+R L+HQP  G  G A+DIE H
Sbjct: 82  VIRFVKTPVYTIGMGLVASAGVLVLLAAKKDCRFGLRNSRYLIHQPLSGMRGVATDIEIH 141

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           A+++ K + +LN +     G + ++V +  +RD+ + AS+A ++G++  ++  R D+ +K
Sbjct: 142 ARELEKTRSKLNALIASETGVSLDKVAQDTNRDYWLDASQALEYGLISNLIEKRADLPKK 201


>gi|18202219|sp|O84003|CLPP2_TREPA RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
          Length = 199

 Score =  140 bits (354), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 67/180 (37%), Positives = 112/180 (62%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
            + + L+ R + ++G+I   +A  I  QL  LE+ +  K I +Y++SPGG V AG AI+D
Sbjct: 20  FFQKFLETRQILLSGEISKDLAEGIVRQLFVLESLSVSKPIYMYVDSPGGDVDAGYAIFD 79

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            ++F+K P+ T  MG  AS G L+L A +K  RF L N+R L+HQP  G  G A+DIE H
Sbjct: 80  VIRFVKTPVYTIGMGLVASAGVLVLLAAKKDCRFGLRNSRYLIHQPLSGMRGVATDIEIH 139

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           A+++ K + +LN +     G + ++V +  +RD+ + AS+A ++G++  ++  R D+ +K
Sbjct: 140 ARELEKTRSKLNALIASETGVSLDKVAQDTNRDYWLDASQALEYGLISNLIEKRADLPKK 199


>gi|76162449|gb|ABA40787.1| SJCHGC02727 protein [Schistosoma japonicum]
          Length = 98

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 62/96 (64%), Positives = 83/96 (86%)

Query: 52  EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQA 111
            D +A L+ AQLL+L++E+ +  I +YINSPGGVVTAG+AIYDTMQFIKPP++T+C+GQA
Sbjct: 1   SDEVAGLVVAQLLYLQSEDKKIPIHIYINSPGGVVTAGLAIYDTMQFIKPPVATWCVGQA 60

Query: 112 ASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQ 147
           +SMGSLLL+AG  G+RFALP++RI++HQPSG   G+
Sbjct: 61  SSMGSLLLAAGAPGLRFALPHSRIMVHQPSGSAHGE 96


>gi|122202884|sp|Q2QD64|CLPP_CUCSA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|74027125|gb|AAZ94675.1| ATP-dependent protease [Cucumis sativus]
 gi|115432828|gb|ABI97441.1| clp protease proteolytic subunit [Cucumis sativus]
 gi|115498328|gb|ABI98770.1| clp protease proteolytic subunit [Cucumis sativus]
          Length = 195

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 64/172 (37%), Positives = 109/172 (63%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL ++R++F+   + + ++  I   +++L  E+  K+  L+INSPGG V  G+ ++
Sbjct: 22  DLYNRLYRQRLLFLGQDVNNEISNQIMGLMVYLSIEDGTKDQYLFINSPGGSVIPGVGLF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS-GQASDIE 152
           DTMQF+ P + T C+G AASMGS +L  GE   R A P+AR+++HQP+  FS G+  +  
Sbjct: 82  DTMQFVSPDVHTICIGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFSKGKTGEFV 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             + +++ ++  + ++YV+  GK    + + L+RD  MSA EA   G+VD V
Sbjct: 142 LESTELLNLRETITKVYVQRTGKPLWVISEDLERDVFMSAPEAQAHGIVDLV 193


>gi|332180360|gb|AEE16048.1| ATP-dependent Clp protease proteolytic subunit [Treponema
           brennaborense DSM 12168]
          Length = 211

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 71/174 (40%), Positives = 111/174 (63%), Gaps = 1/174 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           + ++ LK R + ++G++   +A  I  QLL LEA++ +  I ++I+SPGG V AG AI+D
Sbjct: 35  LNAKFLKTRQILLSGEVNKPLAEKIVRQLLILEADSDEP-IRIFIDSPGGDVDAGYAIFD 93

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            ++F+  P+    MG  AS G+L+L A  K  R ALPN+  L+HQP  G  G A+DIE H
Sbjct: 94  MIRFVNAPVYCIGMGLVASAGALILLAAPKERRIALPNSHYLIHQPLSGIKGVATDIEIH 153

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           A++I K + ++NE+     GK+ ++V K  DRD+ M+A EA  +G++  V+ SR
Sbjct: 154 AREIEKTRAKINELISLETGKSLDQVCKDTDRDYWMNAEEARSYGLISTVVSSR 207


>gi|71033841|ref|XP_766562.1| ATP-dependent Clp protease proteolytic subunit [Theileria parva
           strain Muguga]
 gi|68353519|gb|EAN34279.1| ATP-dependent Clp protease proteolytic subunit, putative [Theileria
           parva]
          Length = 181

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 68/170 (40%), Positives = 110/170 (64%)

Query: 38  RLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97
           RL +ERI+FV+  ++D     + A +L L+ E  +K I+LYINSPGG + +G+++YDT++
Sbjct: 4   RLFRERILFVSQPLDDEYVNQLIAAILCLDNETSEKPITLYINSPGGNMHSGLSLYDTLK 63

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
            ++  I T  +G  AS  +LLL AG  G R+ L ++R+LL QPSG   G A  I+  AQ 
Sbjct: 64  HVRSEIVTINVGLCASTATLLLGAGTPGKRYGLKHSRVLLLQPSGLAEGTAEQIKIEAQH 123

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           I++IKR L EIY     + YE++   ++RD+ MS+ E   +G++D+++ +
Sbjct: 124 ILEIKRNLVEIYSNITKQPYEKIASDIERDNFMSSEEYKSYGLIDEIITN 173


>gi|325126890|ref|YP_004286127.1| clp protease proteolytic subunit [Fragaria vesca subsp. vesca]
 gi|324022802|gb|ADY15376.1| clp protease proteolytic subunit [Fragaria vesca subsp. vesca]
          Length = 196

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/170 (39%), Positives = 109/170 (64%), Gaps = 2/170 (1%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           +RL +ER++F+   +++ ++  +   +++L  E+  K++ L+INSPGG V  G+AIYDTM
Sbjct: 24  NRLYRERLLFLGQGVDNEISNQLIGLMVYLSIEDETKDLYLFINSPGGWVIPGVAIYDTM 83

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA-RILLHQPSGGF-SGQASDIERH 154
           QF++P I T CMG AASMGS +L  GE   R A P+A R+++HQP+  F   Q  +    
Sbjct: 84  QFVRPDIQTVCMGLAASMGSFILVGGEITKRLAFPHARRVMIHQPASSFYEAQTGEFVLE 143

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           A++++K++  +  +Y +  GK    V + ++RD  MSA+EA   G+VD V
Sbjct: 144 AEELLKLRETITRVYAQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLV 193


>gi|126657895|ref|ZP_01729048.1| ATP-dependent Clp protease proteolytic subunit [Cyanothece sp.
           CCY0110]
 gi|126620835|gb|EAZ91551.1| ATP-dependent Clp protease proteolytic subunit [Cyanothece sp.
           CCY0110]
          Length = 226

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 76/193 (39%), Positives = 117/193 (60%), Gaps = 19/193 (9%)

Query: 34  DIYSRLLKERIVF----------VTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           D+ S LLKERI++          +  Q+   +  LI AQLL+L+ +NP K I  YINS G
Sbjct: 22  DLESLLLKERIIYLGLPLFSSDEIKQQVGIDVTQLIIAQLLYLQFDNPDKPIFFYINSTG 81

Query: 84  ---------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
                    G  T   AI DTM ++KPPI T C+GQA    +++LSAG KG R +LP+A 
Sbjct: 82  TSWYTGDAIGFETEAFAICDTMNYVKPPIHTICIGQAMGTAAMILSAGTKGCRASLPHAT 141

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I+L+Q   G  GQA+DI+  A++++  K+ + +I  +N G+T E++ K +DR   ++  +
Sbjct: 142 IVLNQNRSGARGQATDIQIRAKEVLHNKQTMLQILSQNTGQTPEKIAKDIDRTFYLTPEK 201

Query: 195 ACDWGVVDKVLMS 207
           A ++G++D+VL S
Sbjct: 202 AKEYGLIDRVLES 214


>gi|11467286|ref|NP_043143.1| ATP-dependent Clp protease proteolytic subunit [Cyanophora
           paradoxa]
 gi|11467404|ref|NP_043261.1| ATP-dependent Clp protease proteolytic subunit [Cyanophora
           paradoxa]
 gi|3023515|sp|Q36863|CLPP1_CYAPA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|1016087|gb|AAA81174.1| ClpP1 protease subnit [Cyanophora paradoxa]
 gi|1016205|gb|AAA81292.1| subunit of ClpP protease [Cyanophora paradoxa]
          Length = 194

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 65/172 (37%), Positives = 108/172 (62%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           S+LL+ RI+  +  ++D +   I  QLL+LE E+  K+I L+INSPGG VTAG+++YDT+
Sbjct: 22  SKLLQNRIILFSQTVDDEICNSIVGQLLYLENEDSTKDIRLFINSPGGSVTAGLSVYDTI 81

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQ 156
           Q +   +ST C G AASMG++LL+AG +  RFA  ++RI++HQP        S ++   +
Sbjct: 82  QNLSVDVSTICFGLAASMGAVLLAAGVENKRFAFASSRIMIHQPLSKVEAPWSHLDIQIR 141

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           +    K  LN I   +  +  +++E   +RD  +SA+EA  +G++D + ++ 
Sbjct: 142 NGAYFKNLLNNILSFHTKQELKQIETDTERDFFLSATEAKQYGIIDHIFINN 193


>gi|15640025|ref|NP_219478.1| ATP-dependent Clp protease proteolytic subunit [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189026264|ref|YP_001934036.1| ATP-dependent Clp protease proteolytic subunit [Treponema pallidum
           subsp. pallidum SS14]
 gi|3323371|gb|AAC26595.1| ATP-dependent Clp protease proteolytic component (clpP-2)
           [Treponema pallidum subsp. pallidum str. Nichols]
 gi|189018839|gb|ACD71457.1| ATP-dependent Clp protease proteolytic component [Treponema
           pallidum subsp. pallidum SS14]
          Length = 237

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/180 (37%), Positives = 112/180 (62%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
            + + L+ R + ++G+I   +A  I  QL  LE+ +  K I +Y++SPGG V AG AI+D
Sbjct: 58  FFQKFLETRQILLSGEISKDLAEGIVRQLFVLESLSVSKPIYMYVDSPGGDVDAGYAIFD 117

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            ++F+K P+ T  MG  AS G L+L A +K  RF L N+R L+HQP  G  G A+DIE H
Sbjct: 118 VIRFVKTPVYTIGMGLVASAGVLVLLAAKKDCRFGLRNSRYLIHQPLSGMRGVATDIEIH 177

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           A+++ K + +LN +     G + ++V +  +RD+ + AS+A ++G++  ++  R D+ +K
Sbjct: 178 ARELEKTRSKLNALIASETGVSLDKVAQDTNRDYWLDASQALEYGLISNLIEKRADLPKK 237


>gi|189162296|ref|YP_001936542.1| ATP-dependent Clp protease proteolytic subunit [Fagopyrum
           esculentum subsp. ancestrale]
 gi|166065382|gb|ABY79757.1| ATP-dependent Clp protease proteolytic subunit [Fagopyrum
           esculentum subsp. ancestrale]
          Length = 210

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 65/184 (35%), Positives = 112/184 (60%), Gaps = 1/184 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL + R++F+T +I   ++  +   +++L  E+  ++  L+IN PGG V  G+AI+
Sbjct: 22  DVYNRLYRSRLLFLTQEITTEISNYLIGLMVYLSIEDQTQDFYLFINCPGGWVLPGIAIF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           D MQ + P I T CMG AASMGS +L  GE   RFA P+AR+++HQP+  F  G   +  
Sbjct: 82  DAMQLVLPDIYTICMGIAASMGSFILVGGEITKRFAFPHARVMIHQPASSFHEGSTGECM 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
             A++++ ++  L ++Y +  G+ +  + + L+RD  MSA EA   G++D +    ++I 
Sbjct: 142 MEAEELLTLRETLTKVYAQRTGQPFGVLTEDLERDVFMSAREAQAHGIIDLIAKEGVEII 201

Query: 213 EKSK 216
           +  K
Sbjct: 202 KTEK 205


>gi|284929272|ref|YP_003421794.1| protease subunit of ATP-dependent protease [cyanobacterium UCYN-A]
 gi|284809716|gb|ADB95413.1| protease subunit of ATP-dependent protease [cyanobacterium UCYN-A]
          Length = 226

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/193 (39%), Positives = 115/193 (59%), Gaps = 19/193 (9%)

Query: 34  DIYSRLLKERIVF----------VTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           D+ S LLKERI++          V  Q+   +  LI AQLL+L+ +NP K I  YINS G
Sbjct: 22  DLESLLLKERIIYLGLPLFSSDEVKQQVGIDVTQLIIAQLLYLQFDNPDKPIFFYINSTG 81

Query: 84  ---------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
                    G  T   AI DTM ++KPPI T C+GQA    +++LSAG KG R +LP+A 
Sbjct: 82  TSWHTGDAVGFETEAFAICDTMNYVKPPIHTICIGQAMGTAAMILSAGTKGCRASLPHAT 141

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I+L+Q   G  GQA+DI+  A++++  K  + +I  KN G+  +++ K +DR   ++  +
Sbjct: 142 IVLNQNRSGAQGQATDIQIRAKEVLSNKSTMLQILSKNTGQAVDKISKDIDRTFYLTPEK 201

Query: 195 ACDWGVVDKVLMS 207
           A ++G++D+VL S
Sbjct: 202 AKEYGLIDRVLES 214


>gi|162450511|ref|YP_001612878.1| endopeptidase Clp [Sorangium cellulosum 'So ce 56']
 gi|161161093|emb|CAN92398.1| Endopeptidase Clp [Sorangium cellulosum 'So ce 56']
          Length = 205

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 69/177 (38%), Positives = 108/177 (61%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           + S LL+ R V + G+I   +A    AQLL L +++ +K I + I+SPGG V +G  I+D
Sbjct: 29  VQSSLLRSRTVLIFGEITSELAQATTAQLLALASDDGEKPIRILIHSPGGHVESGDTIHD 88

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            ++FI+P +     G  AS G+L+  A  +  RFALPN R LLHQP GG  G ASDIE  
Sbjct: 89  VIRFIRPEVKVIGTGWVASAGALIFVAARRENRFALPNTRFLLHQPLGGVRGPASDIEIE 148

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           A  I+  + RLN I+ +  G+   ++ +  +R+  M+A EA ++G+V +++ S ++I
Sbjct: 149 AAQIMAARERLNRIFAEATGQAPAKIAQETERNLWMTAREAKEYGLVHRIVESALEI 205


>gi|124504813|ref|XP_001351149.1| ATP-dependent CLP protease, putative [Plasmodium falciparum 3D7]
 gi|4493909|emb|CAB39018.1| ATP-dependent CLP protease, putative [Plasmodium falciparum 3D7]
          Length = 370

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/176 (38%), Positives = 108/176 (61%), Gaps = 1/176 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+     K+RI+++T +I    A  + +QLL+L+  N   +I +YINSPGG +  G+AI 
Sbjct: 186 DVKLFFFKKRIIYLTDEINKKTADELISQLLYLDNIN-HNDIKIYINSPGGSINEGLAIL 244

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D   +IK  I T   G  ASM S++L++G+KG R +LPN RI++HQP G   G   DIE 
Sbjct: 245 DIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEI 304

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
             ++I+ +K+ L         +T E +EK  DRD+ M+A EA  +G++D+V+ +++
Sbjct: 305 QTKEILYLKKLLYHYLSSFTNQTVETIEKDSDRDYYMNALEAKQYGIIDEVIETKL 360


>gi|7524625|ref|NP_042379.1| ATP-dependent Clp protease proteolytic subunit [Pinus thunbergii]
 gi|1168979|sp|P41609|CLPP_PINTH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|1262619|dbj|BAA04336.1| ATP-dependent protease subunit [Pinus thunbergii]
          Length = 196

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/172 (38%), Positives = 107/172 (62%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+   I   +A  +   +++L AE+  K+I  +IN PGG V  G+ ++
Sbjct: 22  DLYNRLYRERLLFLAQDINHEIANQLMGLMVYLSAEDSNKDIFSFINCPGGSVIPGVGLF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           D MQ I P + T CMG AASMGS +L  GE   R ALP+ARI++HQP S  + G A+D  
Sbjct: 82  DMMQAIVPDVHTICMGVAASMGSFILIGGEMPKRIALPHARIMIHQPASSYYDGSAADFH 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             ++ +  ++  +   Y++   +  E +++ L+RD  MSA+EA  +G+VD V
Sbjct: 142 NESKHVTMLRDYITRCYIERTDQPGEVIQRDLNRDVFMSATEAQAYGIVDVV 193


>gi|168036370|ref|XP_001770680.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678041|gb|EDQ64504.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 214

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 70/180 (38%), Positives = 111/180 (61%)

Query: 29  GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTA 88
           G +  DI++ L +ERI+F+   I++     + A +L+L++ +  K + LYIN PGG +T 
Sbjct: 18  GWQWVDIWNVLYRERIIFLGQYIDEEFGNQVVATMLYLDSVDNSKPMYLYINCPGGDITP 77

Query: 89  GMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQA 148
            MAIYDTM+ IK P+ T  +G A +   LLL+AG KGMR A+P  R+ L  P+G   GQA
Sbjct: 78  CMAIYDTMESIKSPVGTLALGYAYNNAGLLLAAGAKGMRTAMPLTRVALMSPAGAARGQA 137

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
            DI   A+++ +++  + E   K  G+  ++V K L+R    SA EA ++G++DKV+  +
Sbjct: 138 DDIINEAKELNRVRNYVYEQVSKKTGQPVDKVMKDLNRIKRFSAKEALEYGIIDKVVRPK 197


>gi|289066851|ref|YP_003434369.1| clp protease proteolytic subunit [Vigna radiata]
 gi|259020038|gb|ACV90236.1| clp protease proteolytic subunit [Vigna radiata]
          Length = 194

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/171 (39%), Positives = 109/171 (63%), Gaps = 3/171 (1%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           + +RL +ER++F+   ++  ++  + + +++L  E   KE+SL+INSPGG V  G+AIYD
Sbjct: 24  LINRLYRERLLFLGQDVDSEISNQLISIMIYLSIEKENKELSLFINSPGGWVIPGIAIYD 83

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIER 153
           TMQF++P + T C+G AASMGS LL+ G    R A P+A  ++HQP+  F   QA +   
Sbjct: 84  TMQFVQPDVQTVCLGLAASMGSFLLAGGTITKRLAFPHA--MIHQPASSFYEAQAGEFVL 141

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            A++++K++  +  +YV+  GK    +   ++RD  MSA+EA   G+VD V
Sbjct: 142 EAEELLKLRETITNVYVQRTGKPLWVISDDMERDVFMSAAEAQAHGIVDLV 192


>gi|167949879|ref|ZP_02536953.1| peptidase S14, ClpP [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 125

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 59/119 (49%), Positives = 89/119 (74%)

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
           M+IYDTMQFI+P +ST C+GQAASMG+LLL+ G  G R+ LPN+R+++HQP GG  GQAS
Sbjct: 1   MSIYDTMQFIRPDVSTMCIGQAASMGALLLTGGAPGKRYCLPNSRMMIHQPLGGVQGQAS 60

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           DIE HA++I+ ++ RLNEI   + G++ +++    +RD+ +   +A  +G++D+VL  R
Sbjct: 61  DIEIHAKEILLLRERLNEILAHHTGQSLKQIAADTERDNFLGGEDAVAYGLIDQVLAQR 119


>gi|228016690|gb|ACP51518.1| ATP-dependent Clp protease proteolytic subunit [Pinus aristata]
          Length = 196

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 66/172 (38%), Positives = 106/172 (61%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+   I   +A  +   +++L AE+  K+I  ++N PGG V  G+ ++
Sbjct: 22  DLYNRLYRERLLFLAQDINHEIANQLMGLMVYLSAEDANKDIFSFLNCPGGSVIPGVGLF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           D MQ I P + T CMG AASMGS +L  GE   R ALP+AR+++HQP S  + G A++  
Sbjct: 82  DMMQVIVPNVHTICMGVAASMGSFILIGGEITKRMALPHARVMIHQPASSYYDGPAAEFH 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
              + I  ++  + + Y++      E +++ LDRD  MSA+EA  +G+VD V
Sbjct: 142 NEVKHITMLRNYITKCYIERTDNPEEVIQRDLDRDVFMSATEARAYGIVDTV 193


>gi|257065503|ref|YP_003145175.1| protease subunit of ATP-dependent protease [Slackia
           heliotrinireducens DSM 20476]
 gi|256793156|gb|ACV23826.1| protease subunit of ATP-dependent protease [Slackia
           heliotrinireducens DSM 20476]
          Length = 197

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/189 (35%), Positives = 117/189 (61%), Gaps = 4/189 (2%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
            P +++++NRG  ++ I  ++L +R +   G I+      +C QL +L+ E+P  EI+++
Sbjct: 8   TPNIIKESNRGYDTFRIVDKMLADREIACIGPIDAAQTDSLCLQLRYLQKEDPAAEITIF 67

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
            NSPGG V +G+AIYDTM+ +  P+ T C+G A SM +LL  +G++  R  LP++R+++H
Sbjct: 68  FNSPGGEVQSGLAIYDTMRAVSCPVRTVCLGMAGSMAALLFISGDQ--RDMLPHSRVMIH 125

Query: 139 QP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
            P   GG SG A +++  A ++++ +    EI  ++ GKT +EV +T   D    A EA 
Sbjct: 126 DPLLQGGVSGSALEVKTIADNLMRTRDITAEIIAEHTGKTIDEVLETTAHDAYFEAEEAV 185

Query: 197 DWGVVDKVL 205
            +G+ D+V+
Sbjct: 186 AYGLADRVI 194


>gi|255580803|ref|XP_002531222.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis]
 gi|223529182|gb|EEF31158.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis]
          Length = 314

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/224 (37%), Positives = 124/224 (55%), Gaps = 16/224 (7%)

Query: 6   CAKKDSEDVFLG---LVPMVVEQTNRG----ERSYDIYSRLLKERIVFVTGQIEDHMATL 58
           C    S   F G   +V MV+  T RG    +   D+ S L K RIV++   +   +  L
Sbjct: 80  CLNPASISNFRGKRSVVTMVIPYT-RGSAWEQPPPDLASYLFKNRIVYLGMSLVPSVTEL 138

Query: 59  ICAQLLFLEAENPQKEISLYINSPG--------GVVTAGMAIYDTMQFIKPPISTFCMGQ 110
           I A+ L+L+ E+ +K I LYINS G        G  T   AI+D M ++KPPI T C+G 
Sbjct: 139 ILAEFLYLQYEDEEKPIYLYINSTGTTKGGEKLGYETEAFAIHDVMGYVKPPIFTLCVGN 198

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYV 170
           A    +LLL+AG KG R ALP++ I++ QP G F GQA+D+E   ++I  +K  L  +  
Sbjct: 199 AWGEAALLLAAGSKGNRSALPSSTIMIKQPIGRFQGQATDVELARKEISNVKAELVNLLA 258

Query: 171 KNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           K  GK+  E+E  + R    + +EA ++G++DKVL +    E++
Sbjct: 259 KYIGKSPGEIEADISRPKYFTPAEAVEYGIIDKVLYNERGTEDR 302


>gi|225470285|ref|XP_002266380.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|147794105|emb|CAN62361.1| hypothetical protein VITISV_031921 [Vitis vinifera]
 gi|297742668|emb|CBI34817.3| unnamed protein product [Vitis vinifera]
          Length = 291

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 63/172 (36%), Positives = 108/172 (62%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+++ L +ER++++   I++  +  + A +L+L++    K +  YINSPGG +T  +AIY
Sbjct: 101 DLWNALYRERVIYIGQHIDEEFSNQLLATMLYLDSIESSKRMFFYINSPGGDLTPSLAIY 160

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           DTMQ +K P+ T C+G A ++ + LL+AGEKG R A+P +RI L  P+G   GQA DI  
Sbjct: 161 DTMQSLKSPVGTNCLGFAYNLATFLLAAGEKGNRLAMPLSRIALQSPAGAARGQADDIRN 220

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            A ++++I+  L        G+  +++ K L R    +A EA ++G++D++L
Sbjct: 221 EANELLRIRDYLFSELANKTGQPIDKINKDLRRMKRFNAQEALEYGLIDRIL 272


>gi|119493581|ref|ZP_01624245.1| ATP-dependent Clp protease proteolytic subunit [Lyngbya sp. PCC
           8106]
 gi|119452571|gb|EAW33754.1| ATP-dependent Clp protease proteolytic subunit [Lyngbya sp. PCC
           8106]
          Length = 220

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/201 (37%), Positives = 118/201 (58%), Gaps = 19/201 (9%)

Query: 34  DIYSRLLKERIVF----------VTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           D+ S LLKERIV+          +  Q+   +  LI AQLL+L+ ++P K I  YINS G
Sbjct: 17  DLESLLLKERIVYLGLPLYSSDDIKRQVGIDVTELIIAQLLYLQFDDPDKPIYFYINSTG 76

Query: 84  ---------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
                    G  T   AI DT+ +IKPP+ T C+GQA    +++LSAG KG R +LP+A 
Sbjct: 77  TSWYGGDAIGFETEAFAICDTISYIKPPVHTICIGQAMGTAAMILSAGTKGYRASLPHAT 136

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           ++L+Q   G  GQA+DI+  A++++  K+   EI  KN G++ E + K  DR   ++   
Sbjct: 137 LILNQAKSGSRGQATDIQIRAKEVLANKQTFLEIMAKNTGQSTERIAKDTDRMFYLTPEA 196

Query: 195 ACDWGVVDKVLMSRIDIEEKS 215
           A ++G++D+VL SR ++ + +
Sbjct: 197 AKEYGLIDRVLQSRKELPKPA 217


>gi|16331161|ref|NP_441889.1| ATP-dependent Clp protease-like-protein [Synechocystis sp. PCC
           6803]
 gi|18202351|sp|P74466|CLPR_SYNY3 RecName: Full=Putative ATP-dependent Clp protease proteolytic
           subunit-like; AltName: Full=Endopeptidase Clp-like
 gi|1653655|dbj|BAA18567.1| ATP-dependent Clp protease proteolytic subunit [Synechocystis sp.
           PCC 6803]
          Length = 225

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 76/199 (38%), Positives = 120/199 (60%), Gaps = 19/199 (9%)

Query: 34  DIYSRLLKERIVF----------VTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           D+ S LLKERIV+          V  Q+   +  LI AQLL+L+ ++P K I  YINS G
Sbjct: 22  DLESLLLKERIVYLGMPLFSSDEVKQQVGIDVTQLIIAQLLYLQFDDPDKPIYFYINSTG 81

Query: 84  ---------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
                    G  T   AI DT+ +IKPP+ T C+GQA    +++LS+G KG R +LP+A 
Sbjct: 82  TSWYTGDAVGFETEAFAICDTLNYIKPPVHTICIGQAMGTAAMILSSGTKGYRASLPHAT 141

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I+L+Q   G  GQA+DI+  A++++  K+ + EI   N G+T E++ K +DR   ++ ++
Sbjct: 142 IVLNQNRTGAQGQATDIQIRAKEVISNKQTMLEILSLNTGQTQEKLAKDMDRTFYLTPAQ 201

Query: 195 ACDWGVVDKVLMSRIDIEE 213
           A ++G++D+VL S  ++ +
Sbjct: 202 AKEYGLIDRVLESPAELPK 220


>gi|228016377|gb|ACP51210.1| ATP-dependent Clp protease proteolytic subunit [Pinus thunbergii]
          Length = 196

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 66/172 (38%), Positives = 107/172 (62%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+   I   +A  +   +++L AE+  K+I  +IN PGG V  G+ ++
Sbjct: 22  DLYNRLYRERLLFLAQDINHEIANQLMGLMVYLSAEDSNKDIFSFINCPGGSVIPGVGLF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           D MQ I P + T CMG AASMGS +L  GE   R ALP+AR+++HQP S  + G A+D  
Sbjct: 82  DMMQAIVPDVHTICMGVAASMGSFILIGGEMPKRIALPHARVMIHQPASSYYDGSAADFH 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             ++ +  ++  +   Y++   +  E +++ L+RD  MSA+EA  +G+VD V
Sbjct: 142 NESKHVTMLRDYITRCYIERTDQPGEVIQRDLNRDVFMSATEAQAYGIVDVV 193


>gi|11497551|ref|NP_054959.1| ATP-dependent Clp protease proteolytic subunit [Spinacia oleracea]
 gi|18203258|sp|Q9M3K5|CLPP_SPIOL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|7636132|emb|CAB88752.1| ATP-dependent protease proteolytic subunit [Spinacia oleracea]
          Length = 196

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 68/172 (39%), Positives = 113/172 (65%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  +++  ++  +   +++L  E+  K++ L+INSPGG V  G+AIY
Sbjct: 22  DVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF++P + T CMG AASMGS +L  GE   R A P+AR+++HQP+  F   Q  +  
Sbjct: 82  DTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFL 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K++  L ++Y +  GK    V + ++RD  MSA+EA   G++D V
Sbjct: 142 LEAEELLKLRETLTKVYGQRTGKPLWVVSEDMERDVFMSATEAQAHGIIDLV 193


>gi|145343664|ref|XP_001416434.1| chloroplast Clp protease, subunit of ClpP peptidase complex
           [Ostreococcus lucimarinus CCE9901]
 gi|144576659|gb|ABO94727.1| chloroplast Clp protease, subunit of ClpP peptidase complex
           [Ostreococcus lucimarinus CCE9901]
          Length = 251

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 73/180 (40%), Positives = 107/180 (59%), Gaps = 8/180 (4%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG--------GV 85
           D+ S + KERIV++   +   +  LI A+LL+L+ E+ +K I LYINS G        G 
Sbjct: 70  DLPSFIFKERIVYLGMTLVPSVTELILAELLYLQYEDKKKPIQLYINSTGSSKDGQKYGY 129

Query: 86  VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS 145
            T   AIYDT+Q++ PP+ T  +G A    ++LL+AG +G R ALP+A I+L QP   F 
Sbjct: 130 DTEAFAIYDTIQYVSPPVHTIAVGTAWGEAAMLLAAGSRGNRAALPSASIMLKQPLSAFR 189

Query: 146 GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           GQAS++E   Q++   KR++ EI  K  GK    VE  ++R      +EA  +G++DKVL
Sbjct: 190 GQASELEIQRQEMRNTKRQMLEILAKTTGKDIATVESDINRPLYFDPTEAVKYGLIDKVL 249


>gi|228015993|gb|ACP50832.1| ATP-dependent Clp protease proteolytic subunit [Pinus resinosa]
          Length = 196

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 66/172 (38%), Positives = 107/172 (62%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+   I   +A  +   +++L AE+  K+I  +IN PGG V  G+ ++
Sbjct: 22  DLYNRLYRERLLFLAQDINHEIANQLMGLMVYLSAEDSNKDIFSFINCPGGSVIPGVGLF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           D MQ I P + T CMG AASMGS +L  GE   R ALP+AR+++HQP S  + G A+D  
Sbjct: 82  DMMQAIVPDVHTICMGVAASMGSFILIGGEMPKRIALPHARVMIHQPASSYYDGSAADFH 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             ++ +  ++  +   Y++   +  E +++ L+RD  MSA+EA  +G+VD V
Sbjct: 142 NESKHVTMLRDYITRCYIERTEQPGEVIQRDLNRDVFMSATEAQAYGIVDVV 193


>gi|154250462|ref|YP_001411286.1| endopeptidase Clp [Parvibaculum lavamentivorans DS-1]
 gi|154154412|gb|ABS61629.1| Endopeptidase Clp [Parvibaculum lavamentivorans DS-1]
          Length = 199

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 67/173 (38%), Positives = 110/173 (63%), Gaps = 1/173 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           L K R V VTG+I D  A  +  +LL +  E+    I++ ++SPGG V +G  I+D +++
Sbjct: 27  LFKSRTVLVTGEINDRQARAVSERLLAMAGES-DDPITVIVSSPGGHVESGDMIHDMIKY 85

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           IKP +     G  AS G+L+  A ++  R+ LPN R LLH+P GG  G A++I+  A+++
Sbjct: 86  IKPRVRVLGTGWVASAGALIYVAADREDRYCLPNTRFLLHEPRGGVGGSATEIDIQAREV 145

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           +K++ RLN+I+ +  G+  E++ K  +RDH M+A EA ++GVV K++ S  +I
Sbjct: 146 LKMRERLNKIFAEATGQPIEKIVKDTNRDHWMNAEEAKEYGVVGKIIRSAAEI 198


>gi|222151830|ref|YP_002560990.1| ATP-dependent Clp protease proteolytic subunit [Macrococcus
           caseolyticus JCSC5402]
 gi|222120959|dbj|BAH18294.1| ATP-dependent Clp protease proteolytic subunit [Macrococcus
           caseolyticus JCSC5402]
          Length = 184

 Score =  138 bits (348), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 65/174 (37%), Positives = 114/174 (65%), Gaps = 1/174 (0%)

Query: 38  RLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97
           ++++ R + ++G I+D  A  +  QLL L++ N  + I L I+SPGG V +G  I+D + 
Sbjct: 12  KMIESRTILISGGIDDKSAKEVVNQLLLLDSIN-HEPIKLIISSPGGHVDSGYLIHDMIN 70

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
           FI+  +     G   S G L+  +G+K  R+ALPN R ++HQPSGG  GQAS++E  A++
Sbjct: 71  FIESEVKIIGAGWVVSAGVLIYLSGKKENRYALPNTRFMIHQPSGGTQGQASNMEITAKE 130

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           I++ +++LNE+  +  GK+ EEVE+   RD+ ++  EA ++G+V+K++ ++ +I
Sbjct: 131 IIRTRQKLNELIARETGKSVEEVEQHTGRDYWLNTEEAKEYGIVNKIIENQKEI 184


>gi|85544605|pdb|2F6I|A Chain A, Crystal Structure Of The Clpp Protease Catalytic Domain
           From Plasmodium Falciparum
 gi|85544606|pdb|2F6I|B Chain B, Crystal Structure Of The Clpp Protease Catalytic Domain
           From Plasmodium Falciparum
 gi|85544607|pdb|2F6I|C Chain C, Crystal Structure Of The Clpp Protease Catalytic Domain
           From Plasmodium Falciparum
 gi|85544608|pdb|2F6I|D Chain D, Crystal Structure Of The Clpp Protease Catalytic Domain
           From Plasmodium Falciparum
 gi|85544609|pdb|2F6I|E Chain E, Crystal Structure Of The Clpp Protease Catalytic Domain
           From Plasmodium Falciparum
 gi|85544610|pdb|2F6I|F Chain F, Crystal Structure Of The Clpp Protease Catalytic Domain
           From Plasmodium Falciparum
 gi|85544611|pdb|2F6I|G Chain G, Crystal Structure Of The Clpp Protease Catalytic Domain
           From Plasmodium Falciparum
          Length = 215

 Score =  138 bits (348), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 68/176 (38%), Positives = 108/176 (61%), Gaps = 1/176 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+     K+RI+++T +I    A  + +QLL+L+  N   +I +YINSPGG +  G+AI 
Sbjct: 31  DVKLFFFKKRIIYLTDEINKKTADELISQLLYLDNIN-HNDIKIYINSPGGSINEGLAIL 89

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D   +IK  I T   G  ASM S++L++G+KG R +LPN RI++HQP G   G   DIE 
Sbjct: 90  DIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEI 149

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
             ++I+ +K+ L         +T E +EK  DRD+ M+A EA  +G++D+V+ +++
Sbjct: 150 QTKEILYLKKLLYHYLSSFTNQTVETIEKDSDRDYYMNALEAKQYGIIDEVIETKL 205


>gi|22299302|ref|NP_682549.1| ATP-dependent Clp protease-like protein [Thermosynechococcus
           elongatus BP-1]
 gi|22295485|dbj|BAC09311.1| ATP-dependent Clp protease proteolytic subunit 3
           [Thermosynechococcus elongatus BP-1]
          Length = 218

 Score =  138 bits (348), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 70/174 (40%), Positives = 109/174 (62%), Gaps = 9/174 (5%)

Query: 41  KERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS---------PGGVVTAGMA 91
           KERIV++   +   +  LI A+LL+L+ ++P+K I +YINS         P G  T   A
Sbjct: 31  KERIVYLGMPLVPAVTELIIAELLYLQYDDPEKPIRIYINSTGTSRYDGEPVGFETEAFA 90

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           I DTM++IKPP+ T C+GQA  M ++LLSAG KG R +LP+A I+LHQ      GQA+DI
Sbjct: 91  ICDTMRYIKPPVHTICIGQAMGMAAMLLSAGTKGCRASLPHATIVLHQTKSYAQGQATDI 150

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           +  A++++  K  + EI  +N G+  E + + +DR   M+   A ++G++D++L
Sbjct: 151 QIRAKEVLANKAMMVEILAQNTGQPPERITRDMDRLLYMTPQMAKEYGIIDRIL 204


>gi|152986625|ref|YP_001347177.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa PA7]
 gi|150961783|gb|ABR83808.1| putative Clp protease [Pseudomonas aeruginosa PA7]
          Length = 201

 Score =  138 bits (347), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 68/172 (39%), Positives = 111/172 (64%), Gaps = 1/172 (0%)

Query: 40  LKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           LK R VFV G++ + +A  +  QL  L A    + I +++NSPGG V +G  I+D ++FI
Sbjct: 26  LKARKVFVIGEVNEKLARDVVQQLHIL-ASISDEPIHMFVNSPGGHVESGDMIFDAIRFI 84

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
            P +     G  AS G+L+ +A +K  R++LPN R LLHQPSGG  G AS+IE + ++IV
Sbjct: 85  TPKVIMIGSGSVASAGALIYAAADKENRYSLPNTRFLLHQPSGGIQGPASNIEIYRREIV 144

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           ++K RL+ I+ +  G+T E++    +RD  ++A EA  +G+V+++++S  +I
Sbjct: 145 RMKERLDRIFAEATGQTAEKISADTERDFWLNAEEAQAYGLVNRIIVSEREI 196


>gi|270642132|ref|ZP_06222130.1| ATP-dependent Clp protease, proteolytic subunit [Haemophilus
           influenzae HK1212]
 gi|270317333|gb|EFA28875.1| ATP-dependent Clp protease, proteolytic subunit [Haemophilus
           influenzae HK1212]
          Length = 269

 Score =  138 bits (347), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 63/113 (55%), Positives = 84/113 (74%)

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           ++FIKP I T C+GQA SMG+ LL+ G  G R ALPNAR+++HQP GGF GQASDI+ HA
Sbjct: 157 VEFIKPDIRTLCIGQACSMGAFLLAGGTAGKRAALPNARVMIHQPLGGFRGQASDIQIHA 216

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           Q+I+KIK  LN+    + G++ E +EK  DRD+ MSA EA  +G+VD+VL+ R
Sbjct: 217 QEILKIKHTLNDRLAFHTGQSIERIEKDTDRDNFMSAEEAQAYGLVDEVLVKR 269


>gi|288960164|ref|YP_003450504.1| ATP-dependent Clp protease, protease subunit [Azospirillum sp.
           B510]
 gi|288912472|dbj|BAI73960.1| ATP-dependent Clp protease, protease subunit [Azospirillum sp.
           B510]
          Length = 208

 Score =  138 bits (347), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 71/176 (40%), Positives = 109/176 (61%), Gaps = 2/176 (1%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +   L K R V + GQI+  +A ++ AQLL L  E+   ++++ +NSPGG V AG  I+D
Sbjct: 32  VQQSLFKARTVLIFGQIDMKLAQVVSAQLLALAHES-DDDVTVVVNSPGGHVEAGDTIHD 90

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            ++FIKP +     G  AS G  +  A  K  RF LPN R L+HQP GG  G+A+DI   
Sbjct: 91  MIRFIKPRVKMLGTGWVASAGCHIYLAANKEDRFCLPNTRFLIHQPLGGTGGRATDIAIE 150

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           A++I++++ RLN+I  +  G+  E+V K  DR++ M A EA D+G+V  ++ +R+D
Sbjct: 151 AKEIIRMRERLNKIIARETGQPLEKVAKDTDRNYWMLADEAKDYGIVSHII-NRMD 205


>gi|307946394|ref|ZP_07661729.1| Clp protease [Roseibium sp. TrichSKD4]
 gi|307770058|gb|EFO29284.1| Clp protease [Roseibium sp. TrichSKD4]
          Length = 210

 Score =  138 bits (347), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 70/185 (37%), Positives = 111/185 (60%), Gaps = 1/185 (0%)

Query: 27  NRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVV 86
            +  +S  +   L + R V +TG I   +A  +C++LL L A+     I++ ++SPGG V
Sbjct: 26  TKTPQSVPVDKHLFEARTVLITGPITQELARDVCSRLLAL-AQVSNDPITVIVSSPGGHV 84

Query: 87  TAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG 146
            +G  I+DT++F+ P +    MG  AS G+L+  +  K  R+   N R LLHQPSGG  G
Sbjct: 85  ESGDMIHDTIKFVSPEVRILGMGWVASAGALIYVSVPKEQRYCTQNTRFLLHQPSGGAGG 144

Query: 147 QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
            A+DIE  A++I+K++ RLN+I+    G+  E +EK  DRD+ MS  E  ++G+V KV+ 
Sbjct: 145 MATDIEIQAKEIIKMRDRLNQIFADATGQPIERIEKDTDRDYWMSPEEGIEYGLVGKVVT 204

Query: 207 SRIDI 211
           +  +I
Sbjct: 205 NASEI 209


>gi|113475005|ref|YP_721066.1| ATP-dependent Clp protease-like protein [Trichodesmium erythraeum
           IMS101]
 gi|110166053|gb|ABG50593.1| Endopeptidase Clp [Trichodesmium erythraeum IMS101]
          Length = 229

 Score =  137 bits (346), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 78/194 (40%), Positives = 113/194 (58%), Gaps = 19/194 (9%)

Query: 34  DIYSRLLKERIVF----------VTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           D+ S +LKERIV+          V   +   +  LI AQLL+L+ +NP+K I  YINS G
Sbjct: 25  DLESLMLKERIVYLGLPLFSSDEVKRNVGIDVTQLIIAQLLYLQFDNPEKPIYFYINSTG 84

Query: 84  ---------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
                    G  T   AI DTM ++KPPI T C+GQA    +++LSAG KG R +LP+A 
Sbjct: 85  TSWYTGDAIGFETEAFAICDTMSYVKPPIHTICIGQAMGTAAMILSAGTKGYRASLPHAT 144

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I+L+Q   G  GQA+DI   A++++  K    +I  KN G++ E++ K  DR   M+   
Sbjct: 145 IVLNQAKTGARGQATDISIRAKEVLVNKTTFLDILSKNTGQSVEKIAKDTDRMLYMTPEI 204

Query: 195 ACDWGVVDKVLMSR 208
           A ++G++D+VL SR
Sbjct: 205 AKEYGLIDQVLASR 218


>gi|303289849|ref|XP_003064212.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226454528|gb|EEH51834.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 215

 Score =  137 bits (346), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 79/206 (38%), Positives = 119/206 (57%), Gaps = 17/206 (8%)

Query: 19  VPMVVEQTNRGERSY---DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ-KE 74
           VP V  +T   E S+   DI++ L +ERIV++  QI+D +   + A +L+L+  +   K+
Sbjct: 5   VPRVPYKTPN-ENSWQWVDIWNCLYRERIVWIGQQIDDELGNQLVATMLYLDTTDKSGKD 63

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS------------LLLSAG 122
           I LYINS GG V   MAI DTM+ IK  +     G A +MG             +LL+ G
Sbjct: 64  IYLYINSEGGEVVPTMAILDTMKHIKSDVGCVGFGSARAMGGAFYLTLVPIRPRMLLACG 123

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
            KG R ALPN  I+LH PSG   G ASDI    ++++KI+ ++N++     G+   E+++
Sbjct: 124 AKGKRAALPNTCIMLHHPSGAARGAASDINNEGRELLKIRAKINDMIAGATGRPASEIQE 183

Query: 183 TLDRDHIMSASEACDWGVVDKVLMSR 208
            + RD  ++A +A D+GV+DKVL  R
Sbjct: 184 NIRRDFHLTAEKALDYGVIDKVLYKR 209


>gi|227452690|gb|ACP34131.1| ATP-dependent protease subunit [Larix gmelinii]
          Length = 196

 Score =  137 bits (346), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 64/170 (37%), Positives = 107/170 (62%), Gaps = 1/170 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+   I   +A  +   +++L AE+  K++  ++N PGG V  G+ I+
Sbjct: 22  DLYNRLYRERLLFLAQDINHEIANQLMGLMVYLSAEDANKDMFSFLNCPGGSVIPGVGIF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           D MQ I P + T CMG AASMGS +L  GE   R ALP+AR+++HQP S  + G A+D  
Sbjct: 82  DVMQIIVPDVHTICMGVAASMGSFILIGGEITKRIALPHARVMIHQPASTYYDGPAADFH 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
             ++ +  ++  + + Y++  G   E +++ L+RD  MSA+EA  +G+V+
Sbjct: 142 NESKHVTMLRDYITKCYIERTGTPGEVIQRGLNRDVFMSATEAQAYGIVE 191


>gi|221055665|ref|XP_002258971.1| ATP-dependent CLP protease [Plasmodium knowlesi strain H]
 gi|193809041|emb|CAQ39744.1| ATP-dependent CLP protease, putative [Plasmodium knowlesi strain H]
          Length = 372

 Score =  137 bits (346), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 68/171 (39%), Positives = 106/171 (61%), Gaps = 1/171 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
             K+RI+++T +I       + +QLL+L+  N   +I +YINSPGG +  G+AI D   +
Sbjct: 188 FFKKRIIYLTEEINKKTTDEMISQLLYLDNIN-HDDIKIYINSPGGSINEGLAILDIFNY 246

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           IK  I T   G  ASM S++L++G+KG R +LPN RI++HQP G   GQ  DIE   ++I
Sbjct: 247 IKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGQPQDIEIQTKEI 306

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           + +K+ L         +T E +EK  DRDH M+A EA  +G++D+V+ +++
Sbjct: 307 LYLKKLLYNYLSTFTNQTTETIEKDSDRDHYMNALEAKRYGIIDEVIETKL 357


>gi|84998026|ref|XP_953734.1| ATP-dependent Clp-like protease [Theileria annulata]
 gi|65304731|emb|CAI73056.1| ATP-dependent Clp-like protease, putative [Theileria annulata]
          Length = 215

 Score =  137 bits (345), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 70/184 (38%), Positives = 114/184 (61%), Gaps = 10/184 (5%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           DI++RL +ERI+FV+  ++D     + A +L L+ E  +K I+LYINSPGG + AG+++Y
Sbjct: 24  DIHNRLFRERILFVSQPLDDEYVNQLIAAILCLDNETSEKPITLYINSPGGNMHAGLSLY 83

Query: 94  DTM----------QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           DT+          Q ++  I T  +G  AS  +LLL +G  G R+ L ++R+LL QPSG 
Sbjct: 84  DTLEVKTNKDKFNQHVRSEIVTINVGLCASTATLLLGSGTPGKRYGLQHSRVLLLQPSGL 143

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
             G A  I+  AQ I++IK+ L EIY     + YE++   ++RD+ MS+ E   +G++D+
Sbjct: 144 AEGTAEQIKIEAQHILEIKKNLIEIYSNITKQPYEKIASDIERDNFMSSEEYKSYGLIDE 203

Query: 204 VLMS 207
           ++ +
Sbjct: 204 IITN 207


>gi|32307600|gb|AAP79205.1| ClpP protease [Bigelowiella natans]
          Length = 260

 Score =  137 bits (345), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 64/175 (36%), Positives = 101/175 (57%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           DI         +F TG+I D +   +   +LFL  ++    I L INSPGG + AG+A+Y
Sbjct: 54  DISDFFENNNFLFCTGEINDQLVNSLINSILFLSYKDNNSSIKLCINSPGGSIMAGLALY 113

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D + +     +T  +G AASMG+ LL++G  G+RF+ PN RI++HQP GG  G A DIE 
Sbjct: 114 DAIVWTNKSTNTISLGLAASMGAFLLASGTNGLRFSTPNTRIMIHQPIGGIQGNAVDIEI 173

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
             ++++  +  +N +  K   ++   +E   DRD  M+  EA ++G++D+VL  R
Sbjct: 174 QVKELLYHRNNINYLLSKFTDQSLSMIESDTDRDKYMTPLEAKEYGIIDRVLNCR 228


>gi|63055028|gb|AAY29052.1| predicted ATP-dependent Clp protease proteolytic subunit 1
           [Bifidobacterium longum subsp. suis]
 gi|63055034|gb|AAY29055.1| predicted ATP-dependent Clp protease proteolytic subunit 1
           [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 140

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 62/129 (48%), Positives = 91/129 (70%)

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG +TAGMAIYDTMQ I+P ++T  +G  ASMG  LLS+G KG R+   +AR+L+H
Sbjct: 1   INSPGGSITAGMAIYDTMQLIEPDVATVGLGMCASMGQFLLSSGTKGKRYLTSHARVLMH 60

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  G A+D+  +A+ I+ +K+ ++E+  +  G T EE+ +  + DH  +A EA D+
Sbjct: 61  QPSGGIGGTATDVRINAELIMDMKKTMSELTAEQTGHTLEEIYRDNEYDHWFTAQEALDY 120

Query: 199 GVVDKVLMS 207
           G VDK++ +
Sbjct: 121 GFVDKLVTT 129


>gi|195612324|gb|ACG27992.1| ATP-dependent Clp protease proteolytic subunit 2 [Zea mays]
 gi|238007600|gb|ACR34835.1| unknown [Zea mays]
          Length = 292

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/213 (35%), Positives = 124/213 (58%), Gaps = 7/213 (3%)

Query: 7   AKKDSEDVFLGLVPM---VVEQTNRGERSY---DIYSRLLKERIVFVTGQIEDHMATLIC 60
           +KK +    + ++P+    V     GE ++   DI++ L +ERI+F+   I++  +  + 
Sbjct: 65  SKKKATRARISMMPIGTPRVPYRTPGEGTWQWLDIWNALYRERIIFIGDNIDEEFSNQVL 124

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           A +L+L++ +  K+I LYIN PGG +T  MA+YDTM  +K PI T C+G A ++   +L+
Sbjct: 125 ASMLYLDSIDNSKKIMLYINGPGGDLTPCMALYDTMLSLKSPIGTHCLGFAFNLAGFILA 184

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AGEKG R  +P  RI L  P+G   GQA DIE  A ++++IK  L      + G + E++
Sbjct: 185 AGEKGSRTGMPLCRISLQSPAGAARGQADDIENEANELIRIKNYLYGKLAGHTGHSVEKI 244

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLM-SRIDIE 212
            + L R     A  A ++G++D+++  SRI  E
Sbjct: 245 HEDLSRVKRFDAEGALEYGIIDRIVRPSRIKKE 277


>gi|161899169|ref|XP_001712811.1| Clp protease [Bigelowiella natans]
 gi|75756304|gb|ABA27199.1| Clp protease [Bigelowiella natans]
          Length = 264

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/175 (36%), Positives = 101/175 (57%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           DI         +F TG+I D +   +   +LFL  ++    I L INSPGG + AG+A+Y
Sbjct: 58  DISDFFENNNFLFCTGEINDQLVNSLINSILFLSYKDNNSSIKLCINSPGGSIMAGLALY 117

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D + +     +T  +G AASMG+ LL++G  G+RF+ PN RI++HQP GG  G A DIE 
Sbjct: 118 DAIVWTNKSTNTISLGLAASMGAFLLASGTNGLRFSTPNTRIMIHQPIGGIQGNAVDIEI 177

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
             ++++  +  +N +  K   ++   +E   DRD  M+  EA ++G++D+VL  R
Sbjct: 178 QVKELLYHRNNINYLLSKFTDQSLSMIESDTDRDKYMTPLEAKEYGIIDRVLNCR 232


>gi|254421954|ref|ZP_05035672.1| Clp protease [Synechococcus sp. PCC 7335]
 gi|196189443|gb|EDX84407.1| Clp protease [Synechococcus sp. PCC 7335]
          Length = 230

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 76/193 (39%), Positives = 116/193 (60%), Gaps = 19/193 (9%)

Query: 34  DIYSRLLKERIVFVTG----------QIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           D+ S LLKERIV++            Q+   +  LI AQLL+LE ++P+K I  YINS G
Sbjct: 25  DLQSLLLKERIVYLGTPLVSSDDFKRQMGVDVTKLIIAQLLYLEFDDPEKPIYFYINSTG 84

Query: 84  ---------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
                    G  T   AI DT+++IKPP+ T C+GQA    +++LS+G KG R +LP+A 
Sbjct: 85  TSWYTGDAVGFETEAFAICDTLKYIKPPVHTICLGQAMGTAAMILSSGAKGSRASLPHAT 144

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I+L+Q   G  GQA+DI+  A++++  K    +I   N G++ E+++K  DR   ++  E
Sbjct: 145 IVLNQTRSGAQGQATDIQIRAEEVLANKAAQLDILSANTGQSTEKLDKDTDRMFYLTPEE 204

Query: 195 ACDWGVVDKVLMS 207
           A D+G++D+VL S
Sbjct: 205 AKDYGLIDRVLSS 217


>gi|63055024|gb|AAY29050.1| predicted ATP-dependent Clp protease proteolytic subunit 1
           [Bifidobacterium dentium]
 gi|63055032|gb|AAY29054.1| predicted ATP-dependent Clp protease proteolytic subunit 1
           [Bifidobacterium adolescentis]
          Length = 139

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 62/127 (48%), Positives = 90/127 (70%)

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG +TAGMAIYDTMQ I+P ++T  +G  ASMG  LLS+G KG RF   +AR+L+H
Sbjct: 1   INSPGGSITAGMAIYDTMQLIEPDVATVGLGMCASMGQFLLSSGTKGKRFLTSHARVLMH 60

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  G A+D+  +A+ I+ +K+ ++E+  +  G T EE+ +  + DH  +A EA ++
Sbjct: 61  QPSGGIGGTATDVRINAELIMDMKKTMSELTAEQTGHTVEEIYRDNEYDHWFTAQEALEY 120

Query: 199 GVVDKVL 205
           G VDK++
Sbjct: 121 GFVDKLV 127


>gi|170077810|ref|YP_001734448.1| ATP-dependent Clp protease-like protein [Synechococcus sp. PCC
           7002]
 gi|169885479|gb|ACA99192.1| Clp protease [Synechococcus sp. PCC 7002]
          Length = 228

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/190 (39%), Positives = 113/190 (59%), Gaps = 19/190 (10%)

Query: 41  KERIVFV----------TGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG------- 83
           KERIV++            QI   +  LI AQLLFL+ ++P K I +YINS G       
Sbjct: 32  KERIVYLGLPLVSPDEYKDQIGVDVTELIIAQLLFLQFDDPDKPIYMYINSTGTSWYGGD 91

Query: 84  --GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
             G  T   AI DT+ +I PP+ T C+GQA    +++L+AG KG R +LP++ I+LHQ  
Sbjct: 92  SIGFETEAFAICDTLNYITPPVHTICLGQAMGTAAMILAAGTKGCRASLPHSTIILHQAR 151

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            G  GQASDI+  A+++++ KR + ++  K  G+  E++EK  DR   M+  +A ++G++
Sbjct: 152 QGAQGQASDIQIRAKEVIENKRTILQMMSKYTGQPLEKLEKDTDRMFYMTPQQALEYGII 211

Query: 202 DKVLMSRIDI 211
           DKVL S  D+
Sbjct: 212 DKVLESSKDL 221


>gi|282896314|ref|ZP_06304336.1| Peptidase S14, ClpP [Raphidiopsis brookii D9]
 gi|281198810|gb|EFA73689.1| Peptidase S14, ClpP [Raphidiopsis brookii D9]
          Length = 229

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 76/199 (38%), Positives = 119/199 (59%), Gaps = 19/199 (9%)

Query: 34  DIYSRLLKERIVFVTG----------QIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           D+ S LLKERIV++            Q+   +  LI AQLL+L+ +NP+K I  YINS G
Sbjct: 25  DLASLLLKERIVYLGTPLVSPDEYKRQMGVDVTKLIIAQLLYLKFDNPEKPIFFYINSTG 84

Query: 84  ---------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
                    G  T   AI DT+ +IK P+ T C+GQA    +L+LS G KG R +LP+A 
Sbjct: 85  TSWYTGDAIGYETEAFAICDTIDYIKTPVHTICIGQAIGTAALILSCGTKGFRASLPHAT 144

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I+L+QP  G  GQA+DI+ +A++++  K  + +I+ KN G+  E++ K ++R   ++   
Sbjct: 145 IVLNQPRSGTRGQATDIQIYAKEVLSNKAAILDIFSKNTGQQPEKISKDMERMFYLTPQA 204

Query: 195 ACDWGVVDKVLMSRIDIEE 213
           A ++G++D+VL S  D+ +
Sbjct: 205 AKEYGLIDRVLESMKDLPK 223


>gi|99024182|dbj|BAE94553.1| ATP-dependent protease proteolytic subunit ClpP [Takakia
           lepidozioides]
          Length = 176

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 62/155 (40%), Positives = 102/155 (65%), Gaps = 1/155 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F    ++D +A      +++L  E+  K++ LYINSPGG V AG+++Y
Sbjct: 22  DVYNRLHRERLLFPGQHVDDEIANQPIGIMMYLNGEDESKDMYLYINSPGGAVLAGISVY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           D MQF+ P + T CMG AASMGS   + GE   R ALP+AR+++HQP S  + GQA +  
Sbjct: 82  DAMQFVAPDVHTICMGLAASMGSFTSTGGEITKRIALPHARVMIHQPASSYYDGQAGECI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
             A++++K++  + ++YV+  GK    + + ++RD
Sbjct: 142 TEAEEVLKLRDCITKVYVQRTGKPLWIISEDMERD 176


>gi|162463534|ref|NP_001106056.1| LOC100125655 [Zea mays]
 gi|150256106|gb|ABR68025.1| PL5L15 [Zea mays]
          Length = 292

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 69/180 (38%), Positives = 110/180 (61%), Gaps = 1/180 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           DI++ L +ERI+F+   I++  +  + A +L+L++ +  K+I LYIN PGG +T  MA+Y
Sbjct: 98  DIWNALYRERIIFIGDNIDEEFSNQVLASMLYLDSIDNSKKIMLYINGPGGDLTPCMALY 157

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           DTM  +K PI T C+G A ++   +L+AGEKG R  +P  RI L  P+G   GQA DIE 
Sbjct: 158 DTMLSLKSPIGTHCLGFAFNLAGFILAAGEKGSRTGMPLCRISLQSPAGAARGQADDIEN 217

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM-SRIDIE 212
            A ++++IK  L      + G + E++ + L R     A  A ++G++D+++  SRI  E
Sbjct: 218 EANELIRIKDYLYGKLAGHTGHSVEKIHEDLSRVKRFDAKGALEYGIIDRIVRPSRIKKE 277


>gi|63055036|gb|AAY29056.1| predicted ATP-dependent Clp protease proteolytic subunit 1
           [Bifidobacterium cuniculi]
          Length = 137

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/136 (47%), Positives = 90/136 (66%)

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG +TAGMAIYDTMQ I+P ++T  +G  ASMG  LLS+G KG RF   +AR+L+H
Sbjct: 1   INSPGGSITAGMAIYDTMQLIEPDVATVGIGMCASMGQFLLSSGTKGKRFLTSHARVLMH 60

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  G  +D+   A+ I+ +K+ L E+  +  G T EE+ +  + DH  +A EA D+
Sbjct: 61  QPSGGIGGTTTDVRISAELIMNMKKTLAELTAEQTGHTVEEIYRDNEYDHWFTAQEALDY 120

Query: 199 GVVDKVLMSRIDIEEK 214
           G VDK++ +   +  K
Sbjct: 121 GFVDKLVSTHDTMTSK 136


>gi|323454123|gb|EGB09993.1| hypothetical protein AURANDRAFT_58799 [Aureococcus anophagefferens]
          Length = 241

 Score =  136 bits (343), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 68/177 (38%), Positives = 110/177 (62%), Gaps = 2/177 (1%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           DIY RL ++RI+ V   +++  A  + A LL+L  E+P+K IS+Y N PG ++   +A+Y
Sbjct: 48  DIYQRLYRDRIMLVGNFLDEEQANSLIAVLLYLRFEDPKKPISIYFNVPGALMKPCLAVY 107

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS--GGFSGQASDI 151
           DT+Q ++ P++T  +G A  MG+ L  AG KG R+ALPNAR L+ +      F GQASDI
Sbjct: 108 DTLQTLECPVTTVNLGLATGMGAFLCGAGTKGCRYALPNARFLMQRTGLDDPFQGQASDI 167

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
               ++ ++   R+ +  VK  G + + + + + RD  +SA EA  +G++DKVL+ +
Sbjct: 168 GLVVRENLRDNDRMEKALVKMTGNSIDVIHQDMKRDFYLSAHEAVQYGLIDKVLIPQ 224


>gi|156094115|ref|XP_001613095.1| ATP-dependent CLP protease [Plasmodium vivax SaI-1]
 gi|148801969|gb|EDL43368.1| ATP-dependent CLP protease, putative [Plasmodium vivax]
          Length = 375

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 72/193 (37%), Positives = 116/193 (60%), Gaps = 4/193 (2%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GL+P V    +  +   D+     K+RI+++T +I    A  + +QLL+L++ N   +I 
Sbjct: 173 GLLPRV---NHIKDMKKDVKLFFFKKRIIYLTEEINKKTADELISQLLYLDSLN-HDDIK 228

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG +  G+AI D   +I+  I T   G  ASM S++L++G+KG R +LPN RI+
Sbjct: 229 IYINSPGGSINEGLAILDIFNYIQSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIM 288

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP G   G   DIE   ++I+ +K+ L         +T E +EK  DRDH M+A EA 
Sbjct: 289 IHQPLGNAFGHPQDIEIQTKEILYLKKLLYNYLSSFTNQTIETIEKDSDRDHYMNALEAK 348

Query: 197 DWGVVDKVLMSRI 209
            +G++D+V+ +++
Sbjct: 349 RYGIIDEVIQTKL 361


>gi|139387476|ref|YP_001122831.1| clp protease proteolytic subunit [Phaseolus vulgaris]
 gi|160380561|sp|A4GGD0|CLPP_PHAVU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|112030998|gb|ABH88110.1| clp protease proteolytic subunit [Phaseolus vulgaris]
          Length = 195

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/190 (37%), Positives = 118/190 (62%), Gaps = 6/190 (3%)

Query: 19  VPMVVEQT--NRGERSYDIY-SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           VP V  +T  +R     DI  +RL +ER++F+   ++  ++  + + +++L  E   K++
Sbjct: 5   VPRVPFRTPGDRDASWVDILINRLYRERLLFLGQDVDSEISNQLISLMIYLSIEKENKDL 64

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            L+INSPGG V  G+A+YDTMQF++P + T C+G AASMGS LL+ G    R A P+A  
Sbjct: 65  YLFINSPGGWVIPGIALYDTMQFVQPDVQTVCLGLAASMGSFLLAGGTITKRLAFPHA-- 122

Query: 136 LLHQPSGGF-SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           ++HQP+  F   QA +    A++++K++  +  +YV+  GK+   + + ++RD  MSA+E
Sbjct: 123 MIHQPASSFYEAQAGEFILEAEELLKMRETITRVYVQRTGKSLWVISEDMERDVFMSAAE 182

Query: 195 ACDWGVVDKV 204
           A   G+VD V
Sbjct: 183 AQAHGIVDLV 192


>gi|298713496|emb|CBJ27051.1| ATP-dependent Clp protease proteolytic subunit [Ectocarpus
           siliculosus]
          Length = 323

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/175 (40%), Positives = 106/175 (60%), Gaps = 9/175 (5%)

Query: 42  ERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------GVVTAGMAI 92
            RIV++   +   +  LI A+LL+L  E+  K + +YIN+PG         G  T   AI
Sbjct: 120 NRIVYLGMPLVPAVTELIIAELLYLNYESASKPVYMYINTPGTSTPDGRAIGFETEAFAI 179

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIE 152
            D M +IKPP+ T  +GQA  +G++LL++GEKG R ALPNA I+LHQP     GQASDI 
Sbjct: 180 SDCMNYIKPPVYTIGVGQAFGLGAMLLASGEKGHRSALPNASIMLHQPRSMARGQASDIA 239

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
             A++++  ++   ++  + CGK Y+EV +   R   MS  +A ++G++DKVL S
Sbjct: 240 IKAKEVMANRKTATQMLSEACGKPYDEVLEDSSRTFYMSPDDAVEYGLIDKVLRS 294


>gi|110456662|gb|ABG74781.1| ATP-dependent protease catalytic subunit [Jasminum leratii]
          Length = 261

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 73/184 (39%), Positives = 115/184 (62%), Gaps = 2/184 (1%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y++L +  I+F+  +IE  +A  I A +L+L  ++P + +  +INSPGG V  G+AIY
Sbjct: 57  DLYTKLYQLGILFLGEEIEFVVANEIIAAMLYLNMQDPLQRLYFFINSPGGAVHDGLAIY 116

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS-GGFSGQASDIE 152
           D M++I   I T C GQAASM S+LL++G KG R A P++ +++HQP+     G+   + 
Sbjct: 117 DAMKYIDQEIHTICYGQAASMASVLLASGAKGHRGAYPHSMVMMHQPALAPTRGRLQRLV 176

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID-I 211
           R    +  +K R+ +IYV    K    +E+TL+RDH MS  EA ++G++DK+     D I
Sbjct: 177 RERNCLNILKERIIDIYVCETRKDRLVIERTLERDHYMSPIEAREYGIIDKIYGGIFDKI 236

Query: 212 EEKS 215
           EE +
Sbjct: 237 EEDN 240


>gi|115466260|ref|NP_001056729.1| Os06g0136800 [Oryza sativa Japonica Group]
 gi|55296987|dbj|BAD68462.1| putative ATP-dependent Clp protease proteolytic subunit [Oryza
           sativa Japonica Group]
 gi|113594769|dbj|BAF18643.1| Os06g0136800 [Oryza sativa Japonica Group]
 gi|215692474|dbj|BAG87894.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215704676|dbj|BAG94304.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215737501|dbj|BAG96631.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218197521|gb|EEC79948.1| hypothetical protein OsI_21540 [Oryza sativa Indica Group]
 gi|222634917|gb|EEE65049.1| hypothetical protein OsJ_20046 [Oryza sativa Japonica Group]
          Length = 297

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 68/180 (37%), Positives = 110/180 (61%), Gaps = 1/180 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           DI++ L +ERI+F+   I++  +  + A +L+L++ +  K+I LYIN PGG +T  MA+Y
Sbjct: 103 DIWNALYRERIIFIGDSIDEEFSNQVLASMLYLDSVDNTKKILLYINGPGGDLTPCMALY 162

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           DTM  +K PI T C+G A ++   +L+AGEKG R  +P  RI L  P+G   GQA DIE 
Sbjct: 163 DTMLSLKSPIGTHCLGFAFNLAGFILAAGEKGSRTGMPLCRISLQSPAGAARGQADDIEN 222

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM-SRIDIE 212
            A ++++IK  L     ++ G   +++ + L R     A  A ++G++D+++  SRI  E
Sbjct: 223 EANELIRIKNYLYSKLSEHTGHPVDKIHEDLSRVKRFDAEGALEYGIIDRIIRPSRIKKE 282


>gi|209964755|ref|YP_002297670.1| ClpP protease, putative [Rhodospirillum centenum SW]
 gi|209958221|gb|ACI98857.1| ClpP protease, putative [Rhodospirillum centenum SW]
          Length = 211

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 70/178 (39%), Positives = 106/178 (59%), Gaps = 1/178 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I   L K R V + G+I   +A    AQLL   A      I++ INSPGG V +G +I+D
Sbjct: 35  IQQALFKSRTVLIFGEINQKVAQDTVAQLLAY-ASISDDPINIVINSPGGHVESGDSIHD 93

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           T++FIKP +     G  AS G+ +     +  R+ LPN R L+HQP GG  G+ASDI   
Sbjct: 94  TIRFIKPRVKILGTGWVASAGAHIFLGAHRENRYCLPNTRFLIHQPMGGAGGRASDIAIE 153

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
           AQ+I+K++RR+N I  +  G+  E VE+  DR++ MSA EA ++G+V  ++ ++ + +
Sbjct: 154 AQEIIKMRRRINSIIARETGQPLERVEQDTDRNYWMSAEEAKEYGLVTHIVATQAEFD 211


>gi|313184018|ref|YP_004021175.1| clp protease proteolytic subunit [Castanea mollissima]
 gi|309321545|gb|ADO65085.1| clp protease proteolytic subunit [Castanea mollissima]
          Length = 196

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 66/170 (38%), Positives = 108/170 (63%), Gaps = 2/170 (1%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           +RL + R++F+  +++  ++  I   +++L  E+  K++ L+INSPGG V  G+AIYDTM
Sbjct: 24  NRLYRARLLFLGQEVDSDLSNQIIGLMVYLSLEDDSKDLYLFINSPGGWVIPGVAIYDTM 83

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA-RILLHQPSGGF-SGQASDIERH 154
           QF++P + T CMG AAS+GS LL  GE   R A P+A R+++HQP+  F    A +    
Sbjct: 84  QFVQPDVQTICMGLAASIGSFLLVGGEITKRLAFPHARRVMIHQPASSFYEAPAGEFILE 143

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           A++++K++  +  +YV+  G     V + ++RD  MSA+EA   G+VD V
Sbjct: 144 AEEMMKLRETITGVYVQRTGTPLWVVSEDMERDVFMSATEAQAHGIVDHV 193


>gi|110456699|gb|ABG74808.1| ATP-dependent protease catalytic subunit [Jasminum abyssinicum]
          Length = 259

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 73/182 (40%), Positives = 114/182 (62%), Gaps = 2/182 (1%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y++L +  I+F+  +IE  +A  I A +L+L  ++P + +  +INSPGG V  G+AIY
Sbjct: 55  DLYTKLYQLGILFLGEEIEFVVANEIIAAMLYLNMQDPLQRLYFFINSPGGAVHDGLAIY 114

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS-GGFSGQASDIE 152
           D M++I   I T C GQAASM S+LL++G KG R A P++ +++HQP+     G+   + 
Sbjct: 115 DAMKYIDQEIHTICYGQAASMASVLLASGAKGHRGAYPHSMVMMHQPALAPTRGRLQRLV 174

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID-I 211
           R    +  +K R+ +IYV    K    +E+TL+RDH MS  EA ++G++DK+     D I
Sbjct: 175 RERNCLNILKERIIDIYVCETRKDRLVIERTLERDHYMSPIEAREYGIIDKIYGGIFDKI 234

Query: 212 EE 213
           EE
Sbjct: 235 EE 236


>gi|282900570|ref|ZP_06308512.1| Peptidase S14, ClpP [Cylindrospermopsis raciborskii CS-505]
 gi|281194370|gb|EFA69325.1| Peptidase S14, ClpP [Cylindrospermopsis raciborskii CS-505]
          Length = 229

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 76/199 (38%), Positives = 118/199 (59%), Gaps = 19/199 (9%)

Query: 34  DIYSRLLKERIVFVTG----------QIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           D+ S LLKERIV++            Q+   +  LI AQLL+L+ +NP K I  YINS G
Sbjct: 25  DLASLLLKERIVYLGTPLVSPDEYKRQMGVDVTKLIIAQLLYLKFDNPDKPIFFYINSTG 84

Query: 84  ---------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
                    G  T   AI DT+ +IK P+ T C+GQA    +L+LS G KG R +LP+A 
Sbjct: 85  TSWYTGDAIGYETEAFAICDTIDYIKTPVHTICIGQAIGTAALILSCGTKGFRASLPHAT 144

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I+L+QP  G  GQA+DI+ +A++++  K  + +I+ KN G+  E++ K ++R   ++   
Sbjct: 145 IVLNQPRSGTRGQATDIQIYAKEVLANKAAILDIFSKNTGQQPEKISKDMERMFYLTPQA 204

Query: 195 ACDWGVVDKVLMSRIDIEE 213
           A ++G++D+VL S  D+ +
Sbjct: 205 AKEYGLIDRVLESMKDLPK 223


>gi|63055026|gb|AAY29051.1| predicted ATP-dependent Clp protease proteolytic subunit 1
           [Bifidobacterium animalis subsp. animalis ATCC 25527]
          Length = 138

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 62/130 (47%), Positives = 89/130 (68%)

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG +TAGMAIYDTMQ I+P ++T  +G  ASMG  LLS+G KG RF   +AR+L+H
Sbjct: 1   INSPGGSITAGMAIYDTMQLIEPDVTTVGIGMCASMGQFLLSSGTKGKRFLTSHARVLMH 60

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  G  +D+  +A+ I+ +K+ L E+  +  G T EE+ +  + DH  +A EA ++
Sbjct: 61  QPSGGIGGTTTDVRINAELIMDMKKTLGELTAEQTGHTIEEIYRDNEYDHWFTAEEALEY 120

Query: 199 GVVDKVLMSR 208
           G VDK++ + 
Sbjct: 121 GFVDKLVSTH 130


>gi|326499826|dbj|BAJ90748.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 271

 Score =  135 bits (340), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 68/183 (37%), Positives = 111/183 (60%), Gaps = 1/183 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           DI++ L +ERI+F+   I++  +  + A +L+L++ +  K+I LYIN PGG +T  MA+Y
Sbjct: 75  DIWNALYRERIIFIGDNIDEEFSNQVLASMLYLDSVDDTKKILLYINGPGGDLTPCMALY 134

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           DTM  +K PI T C+G A ++   +L+AG+KG R  +P  R+ L  P+G   GQA DIE 
Sbjct: 135 DTMLSLKSPIGTHCLGFAFNLAGFILAAGQKGSRTGMPLCRVSLQSPAGAARGQADDIEN 194

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM-SRIDIE 212
            + ++ +IK  L     ++ G + E+V + L R     A  A ++G++D+++  SRI  E
Sbjct: 195 ESNELNRIKNYLYGKLAEHTGHSVEKVHEDLSRSKRFDAEGALEYGIIDRIVRPSRIKKE 254

Query: 213 EKS 215
             S
Sbjct: 255 GGS 257


>gi|307104278|gb|EFN52533.1| hypothetical protein CHLNCDRAFT_49097 [Chlorella variabilis]
          Length = 202

 Score =  135 bits (340), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 69/193 (35%), Positives = 121/193 (62%), Gaps = 5/193 (2%)

Query: 19  VPMVVEQTNRGERSY---DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           VP V  +T + E S+   DI++ L +ERI+F++  +++ +   + A +L+L++EN +K++
Sbjct: 5   VPRVPYRTPK-EGSWQWVDIWNCLYRERIIFLSKPVDEELGNQLVATMLYLDSEN-KKDM 62

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           ++YIN  GG V   +AI+DTM+ IK  + T   G    M   LL+ G+KG R AL N RI
Sbjct: 63  NIYINCSGGEVVPCLAIHDTMRHIKSDVGTVGFGGCMGMSGFLLAVGKKGKRSALQNTRI 122

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++H PSG   GQASDI R A+++++I+  ++ I  +  G+ +++V +   R+     SEA
Sbjct: 123 MVHHPSGAARGQASDINREARELLRIRDYMDNILAQATGQPFDKVAQDFSRNCYFDTSEA 182

Query: 196 CDWGVVDKVLMSR 208
            ++G++D ++  R
Sbjct: 183 QEYGLIDNIVRPR 195


>gi|146310154|ref|YP_001175228.1| ATP-dependent Clp protease proteolytic subunit [Enterobacter sp.
           638]
 gi|145317030|gb|ABP59177.1| Endopeptidase Clp [Enterobacter sp. 638]
          Length = 201

 Score =  135 bits (340), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 66/175 (37%), Positives = 109/175 (62%), Gaps = 1/175 (0%)

Query: 38  RLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97
           +LL+ R + ++G+I+  +A  +  Q++ L++ +    I LYINS GG V AG  I+D ++
Sbjct: 26  KLLESRSIIISGEIDQALAEKVITQMILLQSVS-NDPIKLYINSQGGHVEAGDTIHDFIK 84

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
           FI+P +     G  AS G  +  A +K  R+ALPN R ++HQP GG  GQA+DIE  A++
Sbjct: 85  FIRPDVHVIGTGWVASAGITIFLAAKKEHRYALPNTRFMIHQPLGGVRGQATDIEIEARE 144

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
           I+++  R+N++     G+  E+V+K  DR+  MS  EA D+G+V K++    D++
Sbjct: 145 IIRMLERVNKLIADATGQPLEKVKKDTDRNFWMSPGEALDYGIVGKIITHYDDLK 199


>gi|63055038|gb|AAY29057.1| predicted ATP-dependent Clp protease proteolytic subunit 1
           [Bifidobacterium animalis subsp. lactis DSM 10140]
          Length = 138

 Score =  135 bits (340), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 62/130 (47%), Positives = 89/130 (68%)

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG +TAGMAIYDTMQ I+P ++T  +G  ASMG  LLS+G KG RF   +AR+L+H
Sbjct: 1   INSPGGSITAGMAIYDTMQLIEPDVATVGIGMCASMGQFLLSSGTKGKRFLTSHARVLMH 60

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  G  +D+  +A+ I+ +K+ L E+  +  G T EE+ +  + DH  +A EA ++
Sbjct: 61  QPSGGIGGTTTDVRINAELIMDMKKTLGELTAEQTGHTIEEIYRDNEYDHWFTAEEALEY 120

Query: 199 GVVDKVLMSR 208
           G VDK++ + 
Sbjct: 121 GFVDKLVSTH 130


>gi|63055030|gb|AAY29053.1| predicted ATP-dependent Clp protease proteolytic subunit 1
           [Bifidobacterium pullorum]
          Length = 139

 Score =  134 bits (338), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 61/129 (47%), Positives = 89/129 (68%)

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG +TAGMAIYDTMQ I+P ++T  +G  ASMG  LLS+G KG R+   +AR+L+H
Sbjct: 1   INSPGGSITAGMAIYDTMQLIEPDVATVGLGMCASMGQFLLSSGAKGKRYLTSHARVLMH 60

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  G  +D+  +A+ I+ +KR L E+  +  G T EE+ +  + DH  +A +A ++
Sbjct: 61  QPSGGIGGTTTDVRINAELIMDMKRTLAELTAEQTGHTVEEIYRDNEYDHWFTAQQALEY 120

Query: 199 GVVDKVLMS 207
           G VDK++ +
Sbjct: 121 GFVDKIVTT 129


>gi|153012188|ref|YP_001381704.1| clp protease proteolytic subunit [Medicago truncatula]
          Length = 193

 Score =  134 bits (338), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 64/172 (37%), Positives = 110/172 (63%), Gaps = 3/172 (1%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  ++   ++  +   +++L  E+  +++ L+INSPGG V +GMAI+
Sbjct: 22  DLYNRLFQERLLFLGQEVNTEISNQLVGLMVYLSLEDKTRDLYLFINSPGGEVISGMAIF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG-FSGQASDIE 152
           D MQ ++  + T C+G AASMGSLLL  GE   R A P+A  ++HQP+   + GQ  +  
Sbjct: 82  DIMQVVEAEVHTVCVGLAASMGSLLLVGGEFTKRLAFPHA--MIHQPATSLYEGQVGECM 139

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++++K+++ +  IY +  GK   ++ + ++RD  MSA EA   G+VD V
Sbjct: 140 LEAEELLKMRKTITNIYAQRTGKASWQIYRDMERDLFMSAEEAEAHGIVDTV 191


>gi|85090147|ref|XP_958279.1| ATP-dependent Clp protease proteolytic subunit 1 [Neurospora crassa
           OR74A]
 gi|28919624|gb|EAA29043.1| ATP-dependent Clp protease proteolytic subunit 1 [Neurospora crassa
           OR74A]
 gi|28950018|emb|CAD70773.1| related to endopeptidase Clp [Neurospora crassa]
          Length = 158

 Score =  134 bits (338), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 66/147 (44%), Positives = 99/147 (67%), Gaps = 7/147 (4%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG V++G+AIYDTM +IK P+ST C+G AASM ++LL  GE G R+ LP++ ++
Sbjct: 1   MYINSPGGEVSSGLAIYDTMTYIKSPVSTVCVGAAASMAAVLLIGGEPGKRYVLPHSTVM 60

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT--YEE-----VEKTLDRDHI 189
           +HQP GG  GQASDI  +A  I +I+ ++N+I   +  K   YE+     +   ++RD  
Sbjct: 61  VHQPLGGTRGQASDILIYANQIQRIREQINKIVQSHVNKAFGYEKYDLAAISDMMERDKY 120

Query: 190 MSASEACDWGVVDKVLMSRIDIEEKSK 216
           ++A EA + GVVD++L  R+  E + K
Sbjct: 121 LTAEEAVELGVVDQILDRRVKDEAEKK 147


>gi|154316085|ref|XP_001557364.1| ATP-dependent Clp protease proteolytic subunit [Botryotinia
           fuckeliana B05.10]
 gi|150846414|gb|EDN21607.1| ATP-dependent Clp protease proteolytic subunit [Botryotinia
           fuckeliana B05.10]
          Length = 124

 Score =  134 bits (338), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 61/115 (53%), Positives = 88/115 (76%), Gaps = 2/115 (1%)

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           M +IK P+ST C+GQAASMGSLLL  GE G RF LP++ I++HQPSGG+SGQA+DI  HA
Sbjct: 1   MTYIKSPVSTVCVGQAASMGSLLLCGGEPGKRFCLPHSSIMIHQPSGGYSGQATDIAIHA 60

Query: 156 QDIVKIKRRLNEIYVKNCGKTY--EEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
            +I+++++ LNEIY ++  K +  EE+E+ ++RD  +SA EA + G+VD++L  R
Sbjct: 61  TEILRVRKSLNEIYKRHLTKEHSLEEIERMMERDKFLSAQEALEMGIVDEILDRR 115


>gi|69214837|gb|AAZ03801.1| ATP-depedent Clp protease proteolytic subunit [Nuphar advena]
          Length = 196

 Score =  134 bits (338), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 66/170 (38%), Positives = 107/170 (62%), Gaps = 2/170 (1%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           +RL +ER++F+   ++  ++  +   +++L  E+  +++ L+INSPGG V  G+AIYD M
Sbjct: 24  NRLHRERLLFLGQGVDSEISNQLVGLMVYLSMEDNTRDLYLFINSPGGWVIPGIAIYDAM 83

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA-RILLHQPSGGF-SGQASDIERH 154
           Q + P + T CMG AASMGS +L  GE   R A P+A R+++HQP+  F   QA +    
Sbjct: 84  QIVPPDVHTICMGLAASMGSFILVGGEFTKRLAFPHARRVMIHQPASSFYEAQAGEFILE 143

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           A++++K++  L  +YV+  GK    V + ++RD  MSA+EA   G+VD V
Sbjct: 144 AEELLKLREILTRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLV 193


>gi|156618928|ref|YP_001430063.1| ATP-dependent Clp protease proteolytic subunit [Cuscuta gronovii]
 gi|159106818|ref|YP_001531238.1| clp protease proteolytic subunit [Cuscuta obtusiflora]
 gi|160380549|sp|A7M922|CLPP_CUSGR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|156555966|emb|CAM98350.1| ATP-dependent Clp protease proteolytic subunit [Cuscuta gronovii]
 gi|158142542|gb|ABW20583.1| clp protease proteolytic subunit [Cuscuta obtusiflora]
          Length = 198

 Score =  134 bits (338), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 65/184 (35%), Positives = 109/184 (59%), Gaps = 1/184 (0%)

Query: 27  NRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVV 86
           + G+   DIY+RL +ER +F+T  I   +   +    ++L  ++  K+I  ++NSPGG +
Sbjct: 15  DTGQVWIDIYNRLYRERCLFLTHTINTKIGNQLAGLFIYLGIQDDPKDIFFFLNSPGGGI 74

Query: 87  TAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFS 145
            +G+AIYD+MQ ++P   T C+G AASM   LL  G    R A P+AR+++HQP S  F 
Sbjct: 75  ISGLAIYDSMQVVRPDTQTICVGLAASMACFLLVGGTITKRLAFPHARVMMHQPLSTFFE 134

Query: 146 GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            Q  D      +++K++  L E+Y +  GK +  + + ++RD  +S +EA  +G+VD V 
Sbjct: 135 TQTGDAVMEVDELLKMRENLIEVYAQRTGKPHWVISEDIERDVFLSPTEAKTYGLVDVVG 194

Query: 206 MSRI 209
           ++ I
Sbjct: 195 VTLI 198


>gi|254553625|gb|ACT67271.1| clp protease proteolytic subunit [Joinvillea plicata]
          Length = 218

 Score =  134 bits (337), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 64/172 (37%), Positives = 106/172 (61%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER +F+  ++   +   I   +++L  E+   ++ L+INSPGG + +GMAI+
Sbjct: 22  DLYNRLYRERTLFLGQEVRCEITNNITGLMVYLSIEDGISDLFLFINSPGGWIMSGMAIF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           DTM  + P + T C+G AASM S +L  GE   R A P+ARI+LHQP S  +  +  +  
Sbjct: 82  DTMSTVTPDVYTICIGIAASMASFILLGGEPTKRIAFPHARIMLHQPASAYYRTRTGEFV 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A+++ K++  +  +YV   GK++  + + ++RD  MSA+EA D  +VD V
Sbjct: 142 LEAEELTKVREMITRVYVLRTGKSFWVISEDMERDVFMSATEAKDHRIVDIV 193


>gi|63055022|gb|AAY29049.1| predicted ATP-dependent Clp protease proteolytic subunit 1
           [Bifidobacterium magnum]
          Length = 139

 Score =  134 bits (337), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 62/127 (48%), Positives = 87/127 (68%)

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG +TAGMAIYDTMQ I+P ++T  +G  ASMG  LLS+G KG RF   +AR+L+H
Sbjct: 1   INSPGGSITAGMAIYDTMQLIEPDVATVGIGMCASMGQFLLSSGTKGKRFLTSHARVLMH 60

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  G  +D+   A+ I+ +K+ L E+  +  G T EE+ +  + DH  +A EA ++
Sbjct: 61  QPSGGIGGTTTDVRISAELIMNMKKTLAELTAEQTGHTVEEIYRDNEYDHWFTAQEALEY 120

Query: 199 GVVDKVL 205
           G VDK++
Sbjct: 121 GFVDKLV 127


>gi|163758550|ref|ZP_02165637.1| ATP-dependent Clp protease proteolytic subunit [Hoeflea
           phototrophica DFL-43]
 gi|162283840|gb|EDQ34124.1| ATP-dependent Clp protease proteolytic subunit [Hoeflea
           phototrophica DFL-43]
          Length = 192

 Score =  134 bits (337), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 73/175 (41%), Positives = 108/175 (61%), Gaps = 1/175 (0%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           + L K R +F+ G I   +A  +CAQL  L A +   +I +++NSPGG V +G +I+D +
Sbjct: 19  ANLFKSRSIFIYGGITQELAHKVCAQLAALAAAS-DDDIRIFVNSPGGHVESGDSIHDMI 77

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQ 156
            FIKP +     G  AS G+L+  +  K  R  LPN R LLHQPSGG  G  SDIE  A+
Sbjct: 78  GFIKPKVWIIGTGWVASAGALIYVSVPKEQRLCLPNTRFLLHQPSGGTRGMVSDIEIQAR 137

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           +I+K+  RLN I+ K  G+  E++    DRD+ +SA EA D+G+V K++ ++ +I
Sbjct: 138 EIIKMNARLNAIFAKATGQKIEKIAADTDRDYWLSAEEAKDYGLVGKIITNQSEI 192


>gi|295098456|emb|CBK87546.1| Protease subunit of ATP-dependent Clp proteases [Enterobacter
           cloacae subsp. cloacae NCTC 9394]
          Length = 200

 Score =  134 bits (337), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 65/168 (38%), Positives = 106/168 (63%), Gaps = 1/168 (0%)

Query: 38  RLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97
           +LL+ R + ++G+I   +A  +  Q++ L++ +    I LYINS GG V AG  I+D ++
Sbjct: 25  KLLESRSIVISGEINQELAQKVITQMILLQSVS-NDPIKLYINSQGGHVEAGDTIHDFIK 83

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
           FI+P +     G  AS G  +  A +K  R+ALPN R ++HQP GG  GQA+DIE  A++
Sbjct: 84  FIRPEVHVIGTGWVASAGITIFLAAKKEHRYALPNTRFMIHQPLGGVRGQATDIEIEARE 143

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           I+++  R+N++     G+  E+V+K  DR+  MS +EA D+G+V K++
Sbjct: 144 IIRMLERVNKLIADATGQPLEKVKKDTDRNFWMSPAEALDYGIVGKLI 191


>gi|111115588|ref|YP_710206.1| ATP-dependent Clp protease proteolytic subunit [Borrelia afzelii
           PKo]
 gi|216263563|ref|ZP_03435558.1| Clp protease [Borrelia afzelii ACA-1]
 gi|110890862|gb|ABH02030.1| ATP-dependent Clp protease proteolytic component [Borrelia afzelii
           PKo]
 gi|215980407|gb|EEC21228.1| Clp protease [Borrelia afzelii ACA-1]
          Length = 198

 Score =  134 bits (337), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 67/175 (38%), Positives = 110/175 (62%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           +LK R + + G+I   ++ L   ++L LE+ + +K I +YI+S GG + AG AI++ ++F
Sbjct: 20  ILKSRSIVIAGEITKDVSRLFQEKILLLESLDFKKPIFVYIDSEGGDIDAGFAIFNMIRF 79

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           +KP + T  +G  AS  +L+  A +   RF+LP AR LLHQP  GF G A+DIE +A ++
Sbjct: 80  VKPKVFTVGVGLVASAAALIFLAAKLENRFSLPFARYLLHQPLSGFKGVATDIEIYANEL 139

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
            K+K+ LN I  K  G+   ++EK  DRD  + +S A  +G+V +V+ ++  +EE
Sbjct: 140 NKLKKELNNIISKETGQNISKIEKDTDRDFWLDSSAAKKYGLVFEVVETKYQLEE 194


>gi|330038335|ref|XP_003239570.1| ATP-dependent Clp protease proteolytic subunit [Cryptomonas
           paramecium]
 gi|327206494|gb|AEA38672.1| ATP-dependent Clp protease proteolytic subunit [Cryptomonas
           paramecium]
          Length = 243

 Score =  134 bits (337), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 71/181 (39%), Positives = 107/181 (59%), Gaps = 9/181 (4%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------G 84
           D+ S LL  RIV++   +   +  LI A+ LFL+ EN +K + +Y+NS G         G
Sbjct: 51  DLPSLLLHNRIVYLGMPLVPAVTELIVAEFLFLQYENSEKPLFMYLNSTGTSNPDGSSAG 110

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
             T   AI DTM +IKP + T C+GQA    ++LLS GE   R ALPNA I++HQP    
Sbjct: 111 FETEAFAIADTMNYIKPSVHTICVGQAFGTSAMLLSNGEVNCRSALPNATIMIHQPRSQA 170

Query: 145 SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            GQASDI   A++++  +++  EI  KN G++ +++ K   R   +S  EA ++G++DK+
Sbjct: 171 RGQASDIAIKAREVLYNRKQCFEIIAKNSGQSLQKIMKDASRTKYLSPQEAMEYGLIDKI 230

Query: 205 L 205
           L
Sbjct: 231 L 231


>gi|298491709|ref|YP_003721886.1| endopeptidase Clp ['Nostoc azollae' 0708]
 gi|298233627|gb|ADI64763.1| Endopeptidase Clp ['Nostoc azollae' 0708]
          Length = 229

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/192 (39%), Positives = 114/192 (59%), Gaps = 19/192 (9%)

Query: 41  KERIVFV----------TGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG------- 83
           KERIV++            QI   +  LI AQLL+L+ +NP+K I  YINS G       
Sbjct: 32  KERIVYLGMPLVSADEYKRQIGVDVTKLIIAQLLYLKFDNPEKPIFFYINSTGTSWYTGD 91

Query: 84  --GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
             G  T   AI DT+ +IK P+ T C+GQA    +L+LSAG KG R +LP+A I+L+QP 
Sbjct: 92  SIGYETEAFAICDTIDYIKTPVHTICIGQAIGTAALILSAGTKGFRASLPHATIVLNQPR 151

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            G  GQA+DI+ +A++++  K  + +I+ KN G+T  ++ K  +R   ++  EA ++G++
Sbjct: 152 SGTRGQATDIQIYAKEVLANKAAILDIFSKNTGQTPAKIAKDTERMFYLTPQEAKEYGLI 211

Query: 202 DKVLMSRIDIEE 213
           D VL S  D+ +
Sbjct: 212 DIVLASMKDLPK 223


>gi|162606046|ref|XP_001713538.1| ATP-dependent Clp protease proteolytic subunit [Guillardia theta]
 gi|13794458|gb|AAK39833.1|AF165818_41 ATP-dependent Clp protease proteolytic subunit [Guillardia theta]
          Length = 254

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 70/183 (38%), Positives = 110/183 (60%), Gaps = 13/183 (7%)

Query: 42  ERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------GVVTAGMAI 92
            RIV++   +   +  LI A+ L+L+ EN +K + +Y+NS G         G  T   AI
Sbjct: 67  NRIVYLGMPLVPAVTELIVAEFLYLQYENSEKPVYMYLNSTGTSNPDGSSAGFETEAFAI 126

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIE 152
            DTM +IKPP+ T C+GQA    ++LLS+GE G R ALPNA I++HQP+    GQASDI 
Sbjct: 127 ADTMNYIKPPVHTICVGQAFGTCAMLLSSGEPGQRAALPNATIMIHQPTSRARGQASDIA 186

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
             A++++  +++  EI  +  G++ E+V K   R   +S  EA ++G++D++L    D +
Sbjct: 187 IKAREVLYNRKQCFEILAETSGQSLEKVMKDASRTKYLSPMEAVEYGIIDRIL----DTQ 242

Query: 213 EKS 215
           +KS
Sbjct: 243 KKS 245


>gi|218193030|gb|EEC75457.1| hypothetical protein OsI_12017 [Oryza sativa Indica Group]
 gi|222625110|gb|EEE59242.1| hypothetical protein OsJ_11243 [Oryza sativa Japonica Group]
          Length = 278

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 114/196 (58%), Gaps = 19/196 (9%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           + D+ + LL  RI+F+   I   +A  + +QL+ L A + + +I +Y+N PGG + + +A
Sbjct: 82  ALDLATVLLGNRIIFIGQYINSQVAQRVISQLVTLAAVDEEADILIYLNCPGGSLYSILA 141

Query: 92  IYDTMQF-------------------IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           IYD M +                   IKP + T C G  AS  +++L+ GEKGMR+A+PN
Sbjct: 142 IYDCMSWYILDMSICHAETVLIGFGLIKPKVGTVCFGVVASQAAIILAGGEKGMRYAMPN 201

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           AR+++HQP G   G   ++ R   + +  + ++++++    G+T + V++  +RD  MS+
Sbjct: 202 ARVMIHQPQGVSEGNVEEVRRQVGETIYARDKVDKMFAAFTGQTLDMVQQWTERDRFMSS 261

Query: 193 SEACDWGVVDKVLMSR 208
           SEA D+G+VD +L +R
Sbjct: 262 SEAMDFGLVDALLETR 277


>gi|295840242|ref|ZP_06827175.1| Clp protease [Streptomyces sp. SPB74]
 gi|295827856|gb|EFG65658.1| Clp protease [Streptomyces sp. SPB74]
          Length = 217

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 71/189 (37%), Positives = 119/189 (62%), Gaps = 2/189 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T+ G R+ D YSRLL+ RIVF+   ++D  A  + AQ L LE   P ++ISL
Sbjct: 29  VLPEFTERTSYGTRALDPYSRLLEGRIVFLGTPLDDTAAADLAAQFLHLEYAAPDQDISL 88

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N PGG  TA  A++ T++ +   ++T+C+GQA ++G++LL+AG  G R ALP ARI+L
Sbjct: 89  YLNCPGGDFTALTAVHYTLRHLSCDVATYCLGQAVAVGAVLLAAGTPGKRAALPGARIVL 148

Query: 138 HQPSGG--FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
            QP       G+ SD+   A ++ + +R    +     G+T +EV   ++R+ +++A+EA
Sbjct: 149 RQPELAEVTRGRPSDLAVLAGEMARERRTTERLLAAATGRTEDEVHGDMERERVLTAAEA 208

Query: 196 CDWGVVDKV 204
             +G++D +
Sbjct: 209 VAYGIIDAL 217


>gi|218249761|ref|YP_002375256.1| Clp protease [Borrelia burgdorferi ZS7]
 gi|223889372|ref|ZP_03623958.1| Clp protease [Borrelia burgdorferi 64b]
 gi|226321456|ref|ZP_03796983.1| Clp protease [Borrelia burgdorferi Bol26]
 gi|218164949|gb|ACK75010.1| Clp protease [Borrelia burgdorferi ZS7]
 gi|223885058|gb|EEF56162.1| Clp protease [Borrelia burgdorferi 64b]
 gi|226233252|gb|EEH32004.1| Clp protease [Borrelia burgdorferi Bol26]
          Length = 198

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 67/175 (38%), Positives = 109/175 (62%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           +LK R + + G+I   ++ L   ++L LEA + +K I +YI+S GG + AG AI++ ++F
Sbjct: 20  VLKSRSIVIAGEITKDVSRLFQEKILLLEALDFKKPIFVYIDSEGGDIDAGFAIFNMIRF 79

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           +KP + T  +G  AS  +L+  A +   RF+LP AR LLHQP  GF G A+DIE +  ++
Sbjct: 80  VKPKVFTVGVGLVASAAALIFLAAKLENRFSLPFARYLLHQPLSGFKGVATDIEIYTNEL 139

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
            K+K+ LN I  K  G+   ++EK  DRD  + +S A  +G+V +V+ ++  +EE
Sbjct: 140 NKVKKELNNIISKETGQKISKIEKDTDRDFWLDSSAAKKYGLVFEVVETKYQLEE 194


>gi|296101088|ref|YP_003611234.1| ATP-dependent Clp protease proteolytic subunit [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295055547|gb|ADF60285.1| ATP-dependent Clp protease proteolytic subunit [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 198

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 66/175 (37%), Positives = 109/175 (62%), Gaps = 1/175 (0%)

Query: 38  RLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97
           +LL+ R + ++G+I   +A  +  QL+ L++ +    I LYINS GG V AG  I+D ++
Sbjct: 23  KLLESRSIVISGEINQALAEKVITQLILLQSVS-NDPIKLYINSQGGHVEAGDTIHDFIK 81

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
           FI+P +     G  AS G  +  A +K  R++LPN R ++HQP GG  GQA+DIE  A++
Sbjct: 82  FIRPDVHVIGTGWVASAGITIFLAAKKEHRYSLPNTRFMIHQPLGGVRGQATDIEIEARE 141

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
           I+++  R+N++     G+  E+V+K  DR+  MS +EA D+G+V K++    D++
Sbjct: 142 IIRMLDRVNKLIADATGQPLEKVKKDTDRNFWMSPAEALDYGIVGKLITHYDDLK 196


>gi|168033939|ref|XP_001769471.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679182|gb|EDQ65632.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 237

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 73/200 (36%), Positives = 112/200 (56%), Gaps = 11/200 (5%)

Query: 17  GLVPMVVEQTN---RGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQK 73
           G+V MV+       R +   D+ S L K RIVF+   +      L  A+LL+L+ ++P++
Sbjct: 18  GVVTMVIPFQRGDARQQPPPDLPSYLFKNRIVFLAMSLVPAFTELFMAELLYLQYDDPEE 77

Query: 74  EISLYINSPG--------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
            I +YINS G        G  T   AIYDTM+++KPPI T C+G A    +LLL+AG KG
Sbjct: 78  SIYMYINSTGTTKDGEKLGYETEAFAIYDTMRYMKPPIFTLCVGNAWGEAALLLAAGSKG 137

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
            R  LP+A I+L QP   F GQA+DI+   +++  +K    ++  ++ G+  E++   + 
Sbjct: 138 NRACLPSATIMLKQPIAQFRGQATDIDIARKEVRNVKEEFVKLLSRHTGQPPEKITGDIR 197

Query: 186 RDHIMSASEACDWGVVDKVL 205
           R        A D+G++DKVL
Sbjct: 198 RPKYFKPDGAVDYGIIDKVL 217


>gi|284029223|ref|YP_003379154.1| endopeptidase Clp [Kribbella flavida DSM 17836]
 gi|283808516|gb|ADB30355.1| Endopeptidase Clp [Kribbella flavida DSM 17836]
          Length = 206

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 66/170 (38%), Positives = 106/170 (62%)

Query: 38  RLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97
           +LL+ R+V + GQ+ D   TLI  Q+L L AE+P+ +++L+I+S GG V + +AI D M+
Sbjct: 17  QLLRRRVVVLDGQLNDDNGTLIATQILTLAAEDPETDVALWIHSLGGSVPSMLAIRDVMR 76

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
            +   ++T  +G A S G  LLSAG KG R+ALP+AR+L+HQ S G  G A +IE  A D
Sbjct: 77  LVPCDVATVALGLACSAGQFLLSAGTKGKRYALPHARVLMHQGSAGIGGSAVEIEIQAND 136

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           +  I+  +  +  ++ G+  E V +    DH  +A +A ++G +D ++ S
Sbjct: 137 LRHIRDTVLRLVAEDTGQPLETVYEDSLHDHWYTAEQALEYGFIDHLVGS 186


>gi|15595102|ref|NP_212891.1| ATP-dependent Clp protease proteolytic subunit [Borrelia
           burgdorferi B31]
 gi|32171353|sp|O51698|CLPP2_BORBU RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|2688687|gb|AAC67097.1| ATP-dependent Clp protease proteolytic component (clpP-2) [Borrelia
           burgdorferi B31]
          Length = 206

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 67/175 (38%), Positives = 109/175 (62%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           +LK R + + G+I   ++ L   ++L LEA + +K I +YI+S GG + AG AI++ ++F
Sbjct: 28  VLKSRSIVIAGEITKDVSRLFQEKILLLEALDFKKPIFVYIDSEGGDIDAGFAIFNMIRF 87

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           +KP + T  +G  AS  +L+  A +   RF+LP AR LLHQP  GF G A+DIE +  ++
Sbjct: 88  VKPKVFTVGVGLVASAAALIFLAAKLENRFSLPFARYLLHQPLSGFKGVATDIEIYTNEL 147

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
            K+K+ LN I  K  G+   ++EK  DRD  + +S A  +G+V +V+ ++  +EE
Sbjct: 148 NKVKKELNNIISKETGQKISKIEKDTDRDFWLDSSAAKKYGLVFEVVETKYQLEE 202


>gi|237793935|ref|YP_002861487.1| Clp protease [Clostridium botulinum Ba4 str. 657]
 gi|229261558|gb|ACQ52591.1| Clp protease [Clostridium botulinum Ba4 str. 657]
          Length = 198

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 63/178 (35%), Positives = 112/178 (62%), Gaps = 1/178 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +  +LLK R + ++G+I   +A  +  QLL LE E   + I ++INS GG V +   I+D
Sbjct: 21  VMEKLLKSRTIVISGEINQSLAEKVITQLLILE-EMGDEPIKIFINSQGGHVESADTIHD 79

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            ++FIKP +     G  AS G ++  A +K  R++LPN R ++HQP GGF+GQA+DI   
Sbjct: 80  MIKFIKPKVIMIGTGWVASAGIIIYLAADKKNRYSLPNTRYMIHQPLGGFNGQATDIGIE 139

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
           A++I+K++ R+N I  +   +  E++EK  DR++ +++ +A  +G+V K++ +  +++
Sbjct: 140 AEEILKVRNRINTIISEATNQPLEKIEKDTDRNYWLNSDDAMTYGIVGKIISTHPELD 197


>gi|86605370|ref|YP_474133.1| ATP-dependent Clp protease-like protein [Synechococcus sp.
           JA-3-3Ab]
 gi|86553912|gb|ABC98870.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP
           [Synechococcus sp. JA-3-3Ab]
          Length = 210

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/180 (42%), Positives = 115/180 (63%), Gaps = 6/180 (3%)

Query: 34  DIYSRLLKERIVFVTGQIED----HMATLICAQLLFLEAENPQKEISLYINSPGGVV--T 87
           D+ S LL+ERIV++   + +    ++  LI  QLL+L+ E+ +K I +YINS G     T
Sbjct: 19  DLASLLLQERIVYLGLPLAEEANANVTKLIVEQLLYLQYEDREKPIKMYINSTGTYSYDT 78

Query: 88  AGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQ 147
           A  AI DTM +IKPP+ T C+G A  M ++LL+AG KG R +LPNA I+LHQP GG  GQ
Sbjct: 79  AAFAILDTMNYIKPPVHTICIGNAIGMAAMLLAAGAKGFRASLPNATIVLHQPYGGTRGQ 138

Query: 148 ASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           ASDIE   ++I+ ++  + E   ++ G+  E ++K  +R   M+  EA  +G++D+VL S
Sbjct: 139 ASDIEIRTREILTLRNMMLEELSRSTGQPIERIKKDTERLFFMTPEEAKAYGLIDQVLTS 198


>gi|290474765|ref|YP_003467645.1| clpA-clpP ATP-dependent serine protease proteolytic subunit
           [Xenorhabdus bovienii SS-2004]
 gi|289174078|emb|CBJ80865.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
           [Xenorhabdus bovienii SS-2004]
          Length = 199

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 65/175 (37%), Positives = 107/175 (61%), Gaps = 1/175 (0%)

Query: 38  RLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97
           +LLK R + ++G+I   +A  +  QLL L+  N    I ++INS GG V AG  I+D ++
Sbjct: 26  KLLKSRCIMISGEINQALAEKVTTQLLVLQEIN-NDPIKIFINSQGGHVEAGDTIHDLIK 84

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
           FI+P +     G  AS G  +  A  K  R++LPN R ++HQP GG+ G+ASDIE  A++
Sbjct: 85  FIRPEVFIIGTGWVASAGITIFLAARKENRYSLPNTRFMIHQPLGGYQGKASDIEIEAKE 144

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
            + I+ R+N++     G++ E+VEK  DR++ M   +A ++G+V +++    DI+
Sbjct: 145 FLFIRSRINKLISDATGQSIEKVEKDTDRNYWMRPQQAIEYGIVGRIITKWDDIQ 199


>gi|302665244|ref|XP_003024234.1| hypothetical protein TRV_01584 [Trichophyton verrucosum HKI 0517]
 gi|291188281|gb|EFE43623.1| hypothetical protein TRV_01584 [Trichophyton verrucosum HKI 0517]
          Length = 126

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/123 (49%), Positives = 93/123 (75%), Gaps = 3/123 (2%)

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           M +I+ P+ST C+GQAASMGSLLL  GE G R+ LP++ +++HQPSGG+ GQA+DI  HA
Sbjct: 1   MTYIQSPVSTICVGQAASMGSLLLCGGEAGKRYCLPHSSVMIHQPSGGYFGQATDIAIHA 60

Query: 156 QDIVKIKRRLNEIYVKN-CGK--TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
           ++I++++ +LN+IY ++  GK  T EE+EK ++RD+ M A EA + G+VD +L  R+  +
Sbjct: 61  KEILRVRHQLNQIYKRHLTGKEMTLEEIEKLMERDYFMGAKEALEMGIVDSILDRRMPSK 120

Query: 213 EKS 215
           E+S
Sbjct: 121 EES 123


>gi|78062017|ref|YP_371925.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia sp.
           383]
 gi|77969902|gb|ABB11281.1| ATP-dependent Clp protease proteolytic subunit ClpP [Burkholderia
           sp. 383]
          Length = 203

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 71/182 (39%), Positives = 105/182 (57%), Gaps = 1/182 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           ++  L + R VF+TG IE  MA  +   L  L A      I ++I+SPGG V +G  I+D
Sbjct: 21  LFDILTRARKVFITGTIEQRMARDVVQHLHAL-AHISDDPIQVFISSPGGHVESGDLIFD 79

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           T++FIKP + T   G  AS G+L+  A  K  R+ LPN R LLHQPSG   G ASD+  +
Sbjct: 80  TLRFIKPRVITIGSGWVASAGALIYLAANKEDRYTLPNTRFLLHQPSGESRGPASDLNIY 139

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
             +IVK++ RLN I+    G+  E++     RD  +SA EA  +G+  K++ S  +I+ +
Sbjct: 140 LDEIVKMRDRLNRIFADATGQAVEKIASDTARDFWLSAEEAVQYGLAYKIISSESEIDNR 199

Query: 215 SK 216
           + 
Sbjct: 200 TN 201


>gi|86608098|ref|YP_476860.1| ATP-dependent Clp protease-like protein [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86556640|gb|ABD01597.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. JA-2-3B'a(2-13)]
          Length = 211

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 77/180 (42%), Positives = 115/180 (63%), Gaps = 6/180 (3%)

Query: 34  DIYSRLLKERIVFVTGQIED----HMATLICAQLLFLEAENPQKEISLYINSPG--GVVT 87
           D+ S LL+ERIV++   + +    ++  LI  QLL+L+ E+ +K I +YINS G     T
Sbjct: 20  DLASLLLQERIVYLGLPLAEESNANVTKLIIEQLLYLQYEDREKPIKMYINSTGTYNYDT 79

Query: 88  AGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQ 147
           A  AI DTM +IKPP+ T C+G A  M ++LL+AG KG R +LPNA I+LHQP GG  GQ
Sbjct: 80  AAFAILDTMNYIKPPVHTICIGNAIGMAAMLLAAGAKGFRASLPNATIVLHQPYGGTRGQ 139

Query: 148 ASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           ASDIE   ++I+ ++  + E   ++ G+  E ++K  +R   M+  EA  +G++D+VL S
Sbjct: 140 ASDIEIRTREILTLRNMMLEQLSRSTGQPMERIKKDTERLFFMTPEEAKAYGLIDQVLTS 199


>gi|261339094|ref|ZP_05966952.1| hypothetical protein ENTCAN_05307 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318930|gb|EFC57868.1| Clp protease [Enterobacter cancerogenus ATCC 35316]
          Length = 200

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 106/168 (63%), Gaps = 1/168 (0%)

Query: 38  RLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97
           +LL+ R + ++G+I   +A  +  Q++ L++ +    I LYINS GG V AG  I+D ++
Sbjct: 25  KLLESRSIVISGEINQELAQKVITQMILLQSVS-NDPIKLYINSQGGHVEAGDTIHDFIK 83

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
           FI+P +     G  AS G  +  A +K  R++LPN R ++HQP GG  GQA+DIE  A++
Sbjct: 84  FIRPEVHVIGTGWVASAGITIFLAAKKEHRYSLPNTRFMIHQPLGGVRGQATDIEIEARE 143

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           I+++  R+N++     G+  E+V+K  DR+  MS +EA D+G+V K++
Sbjct: 144 IIRMLDRVNKLIADATGQPLEKVKKDTDRNFWMSPAEALDYGIVGKMI 191


>gi|116198401|ref|XP_001225012.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
 gi|88178635|gb|EAQ86103.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
          Length = 155

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 64/139 (46%), Positives = 97/139 (69%), Gaps = 7/139 (5%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG V++G+AIYDTM +IK P+ST C+G AASM ++L+  GE G R+ALP++ I+
Sbjct: 1   MYINSPGGEVSSGLAIYDTMTYIKSPVSTVCVGGAASMAAILMIGGEPGKRYALPHSSIM 60

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT--YEE-----VEKTLDRDHI 189
           +HQP GG  GQA+DI  +A  I +++ +LN I  K+  K+  YE+     V   ++RD  
Sbjct: 61  VHQPLGGTRGQAADILIYATQIQRLREQLNRIVQKHINKSLGYEKYDMQAVNDMMERDKY 120

Query: 190 MSASEACDWGVVDKVLMSR 208
           ++A EA + G++D++L  R
Sbjct: 121 LTAEEAKEMGIIDEILHKR 139


>gi|194476564|ref|YP_002048743.1| ATP-dependent Clp protease proteolytic subunit [Paulinella
           chromatophora]
 gi|171191571|gb|ACB42533.1| ATP-dependent Clp protease proteolytic subunit [Paulinella
           chromatophora]
          Length = 193

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 67/165 (40%), Positives = 102/165 (61%), Gaps = 1/165 (0%)

Query: 42  ERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP 101
           +R +FV G I+D MA  + A LL++ A + +  I + I+S GG +T+   IYDT+ +I  
Sbjct: 2   QRTLFVAGDIDDTMANDLVAALLYMNAVSTKIPICINIDSRGGSITSAFTIYDTINYISA 61

Query: 102 PISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS-GQASDIERHAQDIVK 160
           P+ T C+  A SM   LL+AGEKG RFALPN+RI++ QP G     QASD+     ++  
Sbjct: 62  PVKTVCLSVAESMAVFLLAAGEKGQRFALPNSRIIMEQPIGNVDYRQASDLLIETIEMGF 121

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            KRR+NE   +  G+   ++E+   R + MSA+E+  +G++D VL
Sbjct: 122 TKRRINECMAEMTGQPMTKIEQDTSRRYHMSAAESVKYGLIDHVL 166


>gi|160331817|ref|XP_001712615.1| clpP1 [Hemiselmis andersenii]
 gi|159766064|gb|ABW98290.1| clpP1 [Hemiselmis andersenii]
          Length = 257

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 74/207 (35%), Positives = 117/207 (56%), Gaps = 18/207 (8%)

Query: 20  PMVVEQTNRGERSYD---------IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
           P+ ++    G ++YD         + S LL  RIV++   +   +  LI A+ L+L+ EN
Sbjct: 37  PLSIKSMQTGAQNYDGVRIGPPPDLPSLLLHNRIVYLGMPLVPAVTELIVAEFLYLQYEN 96

Query: 71  PQKEISLYINSPG---------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSA 121
             K + +Y+NS G         G  T   AI DTM +IKPP+ T C+GQA    ++LLS+
Sbjct: 97  ADKPVFMYLNSTGTSNPDGSSAGFETEAFAIADTMNYIKPPVHTICVGQALGTCAMLLSS 156

Query: 122 GEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVE 181
           GE G R ALPN+ I++HQP     GQASDI   A++++  +++  EI  K  G++ ++V 
Sbjct: 157 GEPGQRAALPNSTIMVHQPRTQAKGQASDIAIKAKEVLYNRKQCFEIIAKTSGQSLQKVM 216

Query: 182 KTLDRDHIMSASEACDWGVVDKVLMSR 208
           K   R   ++  EA ++G++DK+L S 
Sbjct: 217 KDASRTKYLTPGEAVEYGIIDKILESN 243


>gi|259909252|ref|YP_002649608.1| ATP-dependent Clp protease proteolytic subunit [Erwinia pyrifoliae
           Ep1/96]
 gi|224964874|emb|CAX56396.1| Putative ATP-dependent Clp protease proteolytic subunit [Erwinia
           pyrifoliae Ep1/96]
 gi|283479304|emb|CAY75220.1| putative ATP-dependent Clp protease,proteolytic subunit ClpP2
           [Erwinia pyrifoliae DSM 12163]
          Length = 198

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 65/169 (38%), Positives = 104/169 (61%), Gaps = 1/169 (0%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           ++LL+ R V ++G+I   +A  + AQLL L+ E   + I L+INS GG V AG  I+D +
Sbjct: 23  NKLLQSRSVIISGEINQALAEKVTAQLLILQ-EMGDEPIKLFINSQGGHVEAGDTIHDMI 81

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQ 156
           +F+KP +     G  AS G  +  A +K  R+ LPN R ++HQP GG  G+ SDIE  A+
Sbjct: 82  KFVKPKVLVIGTGWVASAGITIFLAADKENRYTLPNTRFMIHQPLGGVRGKVSDIEIEAK 141

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           ++++ + R+N++  K  G+  E+VEK  D ++ MS  +A D+G+   V+
Sbjct: 142 ELLRARERINQLISKATGQPLEKVEKDTDSNYWMSPEQAIDYGIATHVI 190


>gi|310766844|gb|ADP11794.1| ATP-dependent clp protease proteolytic subunit [Erwinia sp. Ejp617]
          Length = 198

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 65/169 (38%), Positives = 104/169 (61%), Gaps = 1/169 (0%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           ++LL+ R V ++G+I   +A  + AQLL L+ E   + I L+INS GG V AG  I+D +
Sbjct: 23  NKLLQSRSVIISGEINQALAEKVTAQLLILQ-EMGDEPIKLFINSQGGHVEAGDTIHDMI 81

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQ 156
           +F+KP +     G  AS G  +  A +K  R+ LPN R ++HQP GG  G+ SDIE  A+
Sbjct: 82  KFVKPKVLVIGTGWVASAGITIFLAADKENRYTLPNTRFMIHQPLGGVRGKVSDIEIEAK 141

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           ++++ + R+N++  K  G+  E+VEK  D ++ MS  +A D+G+   V+
Sbjct: 142 ELLRARERINQLISKATGQPLEKVEKDTDSNYWMSPEQAIDYGIATHVI 190


>gi|256391236|ref|YP_003112800.1| endopeptidase Clp [Catenulispora acidiphila DSM 44928]
 gi|256357462|gb|ACU70959.1| Endopeptidase Clp [Catenulispora acidiphila DSM 44928]
          Length = 201

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 69/176 (39%), Positives = 102/176 (57%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           S+    +L   RIV + G ++D   TL+  QLL L  E+P+  ISL+I+SPGG V A +A
Sbjct: 11  SWRTREQLFSRRIVVMDGVLDDDNGTLLATQLLSLATEDPEAGISLWIHSPGGSVPAMLA 70

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           I D M+ +   +ST  +G A S G  LLSAG  G RFALP++RIL+HQ S G  G A D+
Sbjct: 71  IRDVMRLVPCEVSTLALGLACSAGQFLLSAGAHGRRFALPHSRILMHQGSAGIGGSAVDV 130

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           E  A D+  +   +  +   + G+ Y+ V +    D   +A +A D+G +D ++ S
Sbjct: 131 EVQADDLRHMVNTVLGLIAADTGQPYDRVFEDSLHDRWFTARQAKDYGFIDHIVDS 186


>gi|292487469|ref|YP_003530341.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP2
           [Erwinia amylovora CFBP1430]
 gi|292898711|ref|YP_003538080.1| ATP-dependent clp protease proteolytic subunit [Erwinia amylovora
           ATCC 49946]
 gi|291198559|emb|CBJ45667.1| ATP-dependent clp protease proteolytic subunit [Erwinia amylovora
           ATCC 49946]
 gi|291552888|emb|CBA19933.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP2
           [Erwinia amylovora CFBP1430]
 gi|312171574|emb|CBX79832.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP2
           [Erwinia amylovora ATCC BAA-2158]
          Length = 198

 Score =  132 bits (331), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 65/169 (38%), Positives = 104/169 (61%), Gaps = 1/169 (0%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           ++LL+ R V ++G+I   +A  + AQLL L+ E   + I L+INS GG V AG  I+D +
Sbjct: 23  NKLLQSRSVIISGEINQALAEKVTAQLLVLQ-EMGDEPIKLFINSQGGHVEAGDTIHDMI 81

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQ 156
           +F+KP +     G  AS G  +  A +K  R+ LPN R ++HQP GG  G+ SDIE  A+
Sbjct: 82  KFVKPKVLVIGTGWVASAGITIFLAADKENRYTLPNTRFMIHQPLGGVRGKVSDIEIEAK 141

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           ++++ + R+N++  K  G+  E+VEK  D ++ MS  +A D+G+   V+
Sbjct: 142 ELLRARERINQLISKATGQPLEKVEKDTDSNYWMSPEQAIDYGIATHVI 190


>gi|195941577|ref|ZP_03086959.1| ATP-dependent Clp protease proteolytic subunit [Borrelia
           burgdorferi 80a]
 gi|216264605|ref|ZP_03436597.1| Clp protease [Borrelia burgdorferi 156a]
 gi|224532594|ref|ZP_03673216.1| Clp protease [Borrelia burgdorferi WI91-23]
 gi|224533365|ref|ZP_03673959.1| Clp protease [Borrelia burgdorferi CA-11.2a]
 gi|225548857|ref|ZP_03769834.1| Clp protease [Borrelia burgdorferi 94a]
 gi|225551857|ref|ZP_03772800.1| Clp protease [Borrelia sp. SV1]
 gi|226320740|ref|ZP_03796297.1| Clp protease [Borrelia burgdorferi 29805]
 gi|215981078|gb|EEC21885.1| Clp protease [Borrelia burgdorferi 156a]
 gi|224512450|gb|EEF82829.1| Clp protease [Borrelia burgdorferi WI91-23]
 gi|224513530|gb|EEF83887.1| Clp protease [Borrelia burgdorferi CA-11.2a]
 gi|225370460|gb|EEG99896.1| Clp protease [Borrelia burgdorferi 94a]
 gi|225371652|gb|EEH01079.1| Clp protease [Borrelia sp. SV1]
 gi|226233852|gb|EEH32576.1| Clp protease [Borrelia burgdorferi 29805]
 gi|312148239|gb|ADQ30898.1| Clp protease [Borrelia burgdorferi JD1]
 gi|312149694|gb|ADQ29765.1| Clp protease [Borrelia burgdorferi N40]
          Length = 198

 Score =  132 bits (331), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 66/175 (37%), Positives = 108/175 (61%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           +LK R + + G+I   ++ L   ++L LE  + +K I +YI+S GG + AG AI++ ++F
Sbjct: 20  VLKSRSIVIAGEITKDVSRLFQEKILLLETLDFKKPIFVYIDSEGGDIDAGFAIFNMIRF 79

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           +KP + T  +G  AS  +L+  A +   RF+LP AR LLHQP  GF G A+DIE +  ++
Sbjct: 80  VKPKVFTVGVGLVASAAALIFLAAKLENRFSLPFARYLLHQPLSGFKGVATDIEIYTNEL 139

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
            K+K+ LN I  K  G+   ++EK  DRD  + +S A  +G+V +V+ ++  +EE
Sbjct: 140 NKVKKELNNIISKETGQKISKIEKDTDRDFWLDSSAAKKYGLVFEVVETKYQLEE 194


>gi|168183296|ref|ZP_02617960.1| Clp protease [Clostridium botulinum Bf]
 gi|182673417|gb|EDT85378.1| Clp protease [Clostridium botulinum Bf]
          Length = 198

 Score =  132 bits (331), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 63/178 (35%), Positives = 111/178 (62%), Gaps = 1/178 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +  +LLK R + ++G+I   +A  +  QLL LE E   + I ++INS GG V +   I+D
Sbjct: 21  VMEKLLKSRTIVISGEINQSLAEKVITQLLILE-EMGDEPIKIFINSQGGHVESADTIHD 79

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            ++FIKP +     G  AS G  +  A +K  R++LPN R ++HQP GGF+GQA+DI   
Sbjct: 80  MIKFIKPKVIMIGTGWVASAGITIYLAADKKNRYSLPNTRYMIHQPLGGFNGQATDIGIE 139

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
           A++I+K++ R+N I  +   +  E++EK  DR++ +++ +A  +G+V K++ +  +++
Sbjct: 140 AEEILKVRNRINTIISEATNQPLEKIEKDTDRNYWLNSDDAMTYGIVGKIISTHPELD 197


>gi|221217874|ref|ZP_03589341.1| Clp protease [Borrelia burgdorferi 72a]
 gi|225549932|ref|ZP_03770893.1| Clp protease [Borrelia burgdorferi 118a]
 gi|221192180|gb|EEE18400.1| Clp protease [Borrelia burgdorferi 72a]
 gi|225369391|gb|EEG98843.1| Clp protease [Borrelia burgdorferi 118a]
          Length = 198

 Score =  132 bits (331), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 66/175 (37%), Positives = 108/175 (61%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           +LK R + + G+I   ++ L   ++L LE  + +K I +YI+S GG + AG AI++ ++F
Sbjct: 20  VLKSRSIVIAGEITKDVSRLFQEKILLLETLDFKKPIFVYIDSEGGDIDAGFAIFNMIRF 79

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           +KP + T  +G  AS  +L+  A +   RF+LP AR LLHQP  GF G A+DIE +  ++
Sbjct: 80  VKPKVFTVGVGLVASAAALIFLAAKLENRFSLPFARYLLHQPLSGFKGVATDIEIYTNEL 139

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
            K+K+ LN I  K  G+   ++EK  DRD  + +S A  +G+V +V+ ++  +EE
Sbjct: 140 NKVKKELNNIISKETGQKISKIEKDTDRDFWLDSSAAKKYGLVFEVVETKYQLEE 194


>gi|302502710|ref|XP_003013316.1| hypothetical protein ARB_00501 [Arthroderma benhamiae CBS 112371]
 gi|291176879|gb|EFE32676.1| hypothetical protein ARB_00501 [Arthroderma benhamiae CBS 112371]
          Length = 126

 Score =  132 bits (331), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 60/123 (48%), Positives = 93/123 (75%), Gaps = 3/123 (2%)

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           M +I+ P+ST C+GQAASMGSLLL  GE G R+ LP++ +++HQPSGG+ GQA+DI  HA
Sbjct: 1   MTYIQSPVSTICVGQAASMGSLLLCGGEAGKRYCLPHSSVMIHQPSGGYFGQATDIAIHA 60

Query: 156 QDIVKIKRRLNEIYVKN-CGK--TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
           ++I++++ +LN+IY ++  GK  T EE+EK ++RD+ M A EA + G+VD +L  R+  +
Sbjct: 61  KEILRVRHQLNQIYKRHLTGKEMTLEEIEKLMERDYFMGAKEALEMGIVDSILDRRMPSK 120

Query: 213 EKS 215
           E++
Sbjct: 121 EET 123


>gi|119382774|ref|YP_913830.1| endopeptidase Clp [Paracoccus denitrificans PD1222]
 gi|119372541|gb|ABL68134.1| ATP-dependent Clp protease proteolytic subunit ClpP [Paracoccus
           denitrificans PD1222]
          Length = 211

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 66/168 (39%), Positives = 101/168 (60%), Gaps = 1/168 (0%)

Query: 40  LKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
            K R V V G I D +A    A LL L AE+  + I++ I+SPGG V +G  I+D ++FI
Sbjct: 40  FKSRTVIVAGPITDKLAQRTVAHLLAL-AEDSDEPINMLISSPGGHVESGDMIHDVIKFI 98

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
           +P + T   G  AS G+L+    +K  R+ LPN R L+HQPSGG  G ++D+   A+ + 
Sbjct: 99  RPTVRTIGSGWVASAGALIFVGADKENRYCLPNTRFLIHQPSGGIGGTSTDMMIQAEQVR 158

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
            ++ RLN+I+ +  G+  E +EK   RD  ++  EA D+G++ KV+ S
Sbjct: 159 LMRDRLNQIFAEATGQPVERIEKDTQRDFWLNTQEALDYGLLGKVIRS 206


>gi|289621889|emb|CBI51800.1| putative ATP-dependent Clp protease, proteolytic subunit [Sordaria
           macrospora]
          Length = 225

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 69/181 (38%), Positives = 110/181 (60%), Gaps = 28/181 (15%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           R + + G I+D  +  I AQLL+LE++NP K I++YINSPGG V++G+AIYDTM +IK P
Sbjct: 55  RTLCLNGAIDDTTSAAIVAQLLWLESDNPDKPITMYINSPGGEVSSGLAIYDTMTYIKSP 114

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIK 162
           +ST C+G AASM ++LL  GE G R+ALP++ +++                      +I+
Sbjct: 115 VSTVCVGAAASMAAVLLIGGEPGKRYALPHSTVMIQ---------------------RIR 153

Query: 163 RRLNEIYVKNCGKT--YEE-----VEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
            ++N+I   +  K+  YE+     +   ++RD  ++A EA + GVVD++L  R+  E + 
Sbjct: 154 EQINKIVQSHINKSFGYEKYDLAAISDMMERDKYLTAEEAVELGVVDQILDRRVKDEAEK 213

Query: 216 K 216
           K
Sbjct: 214 K 214


>gi|225677382|ref|ZP_03788351.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia
           endosymbiont of Muscidifurax uniraptor]
 gi|225590572|gb|EEH11830.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia
           endosymbiont of Muscidifurax uniraptor]
          Length = 118

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 56/107 (52%), Positives = 84/107 (78%)

Query: 106 FCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRL 165
            C+GQAASMGSLLL+AG KG R++LP++RI++HQPSGG+ GQA+DIE HA +I+++K++L
Sbjct: 1   LCIGQAASMGSLLLAAGTKGKRYSLPHSRIMIHQPSGGYHGQATDIEIHANEILRVKKKL 60

Query: 166 NEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
           N+IY K+ G + +++E  ++RD  M   EA   G++D+V+  R DIE
Sbjct: 61  NQIYEKHTGNSLKKIEGMMERDKFMDPEEARKIGLIDRVIAERTDIE 107


>gi|269956965|ref|YP_003326754.1| endopeptidase Clp [Xylanimonas cellulosilytica DSM 15894]
 gi|269305646|gb|ACZ31196.1| Endopeptidase Clp [Xylanimonas cellulosilytica DSM 15894]
          Length = 208

 Score =  131 bits (330), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 72/181 (39%), Positives = 110/181 (60%), Gaps = 2/181 (1%)

Query: 33  YDIYSR--LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGM 90
           +D  +R  L + R++ + G ++D   TL+  QL+ L  E+P  +I+L+I+SPGG V A +
Sbjct: 10  FDARARRELYERRVLVLDGVLDDDNGTLLATQLVTLAVEDPVADIALWIHSPGGSVPAML 69

Query: 91  AIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASD 150
           AI D ++ I   ++T  +G AAS G  LLSAG +G R ALP+ARILLHQ S G  G A D
Sbjct: 70  AIRDLIRTIPNDVATLALGFAASAGQFLLSAGTRGKRRALPHARILLHQGSAGIGGTAVD 129

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           IE  A D+  ++  +  +  ++ G+  E V +    DH  +A+EA ++G VD ++ S  D
Sbjct: 130 IELQADDLRHMRDTVLGLIAQDTGQPPERVFEDSLHDHWFTAAEAQEYGFVDTIVGSFAD 189

Query: 211 I 211
           I
Sbjct: 190 I 190


>gi|161899373|ref|XP_001712913.1| Clp protease [Bigelowiella natans]
 gi|75756407|gb|ABA27301.1| Clp protease [Bigelowiella natans]
          Length = 207

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 64/162 (39%), Positives = 103/162 (63%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPI 103
           I+ + G ++D++A LI  + LF ++ +  KE++L INSPGG VTAG+ I D + ++K   
Sbjct: 45  ILSLYGGVDDNIADLIFKKALFTKSVDNNKELTLLINSPGGSVTAGLKIMDALNYVKVRN 104

Query: 104 STFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKR 163
           +T C+  AASMG+ LL++G +  R AL N+RI++HQP GG  G +  +E  A +I+  K 
Sbjct: 105 NTVCLALAASMGAFLLASGSRNYRQALLNSRIMIHQPLGGAFGDSLGVEIQANEILYFKL 164

Query: 164 RLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            L+      C K   E+    DRD+ MS+ +A ++G++DK+L
Sbjct: 165 VLSGYLSDFCRKPLNEILVDTDRDYFMSSKQATNYGLIDKIL 206


>gi|308799978|ref|XP_003074770.1| ClpP3 ATP-dependent Clp protease proteolytic subunit ClpR, putat
           (IC) [Ostreococcus tauri]
 gi|119358788|emb|CAL52028.2| ClpP3 ATP-dependent Clp protease proteolytic subunit ClpR, putat
           (IC) [Ostreococcus tauri]
          Length = 244

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 68/180 (37%), Positives = 107/180 (59%), Gaps = 8/180 (4%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG--------GV 85
           D+ S + +ERIV++   +   +  LI A+LL+L+ E+ +K I LYINS G        G 
Sbjct: 65  DLPSFIFQERIVYLGMTLVPSVTELILAELLYLQYEDKKKPIQLYINSTGSSKDGKKYGY 124

Query: 86  VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS 145
            +   AIYDT+Q++ PP+ T  +G A    ++LL++G KG R ALP+A I+L QP   F 
Sbjct: 125 DSEAFAIYDTIQYVSPPVHTIAVGTAWGEAAMLLASGSKGQRAALPSASIMLKQPLSSFR 184

Query: 146 GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           GQAS++E   Q++   K+++ +I  K  G+    +E  ++R      SEA  +G++DKVL
Sbjct: 185 GQASELEIQRQEMRNTKKQMLDILAKTTGRDIATIETDINRPLYFEPSEAIKYGLIDKVL 244


>gi|166201954|gb|ABY84429.1| ATP-dependent protease proteolytic subunit [Lychnis flos-cuculi]
          Length = 375

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 106/172 (61%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  +I+   +  IC  +++L  E+  + + L+INSPGG + +G++I+
Sbjct: 199 DLYNRLYRERLLFLGQEIDTESSNNICGLMIYLSIEDASRNLHLFINSPGGGIISGVSIF 258

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI-E 152
           DTMQF+   + T C G A SM S +L  GE   R ALP++R+++HQP+  F    S +  
Sbjct: 259 DTMQFVLAEVQTICFGLAGSMASFVLLGGELTKRLALPHSRVMMHQPASSFYKDKSRLFS 318

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             +++++K + ++   Y +   +    + + L+RD  MS  EA D G+VD+V
Sbjct: 319 LDSRELLKFREKITLTYAQRTNQPEWVIWEDLERDSFMSPEEALDHGIVDRV 370


>gi|48478794|ref|YP_024401.1| ATP-dependent Clp protease proteolytic subunit [Saccharum hybrid
           cultivar SP-80-3280]
 gi|50812552|ref|YP_054654.1| ATP-dependent Clp protease proteolytic subunit [Saccharum
           officinarum]
 gi|118614516|ref|YP_899432.1| clp protease proteolytic subunit [Sorghum bicolor]
 gi|260677443|ref|YP_003208211.1| clp protease proteolytic subunit [Coix lacryma-jobi]
 gi|68052134|sp|Q6ENT9|CLPP_SACOF RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|75291219|sp|Q6L377|CLPP_SACHY RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|125863811|sp|A1E9U9|CLPP_SORBI RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|48478696|gb|AAT44716.1| ATP-dependent Clp protease subunit [Saccharum hybrid cultivar
           SP80-3280]
 gi|49659536|dbj|BAD27317.1| ATP-dependent protease [Saccharum hybrid cultivar NCo 310]
 gi|118201150|gb|ABK79520.1| clp protease proteolytic subunit [Sorghum bicolor]
 gi|209361381|gb|ACI43296.1| clp protease proteolytic subunit [Coix lacryma-jobi]
          Length = 216

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 67/178 (37%), Positives = 105/178 (58%), Gaps = 1/178 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+ + +ER +F+  +I   +   I   +++L  E+   +I L+INSPGG + +GMAI+
Sbjct: 22  DLYNVMYRERTLFLGQEIRCEITNHITGLMVYLSIEDGNSDIFLFINSPGGWLISGMAIF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           DTMQ + P I T C+G AASM S +L  GE   R A P+ARI+LHQP S  +  +  +  
Sbjct: 82  DTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFL 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
              +++ K++  +  +Y    GK +  V + ++RD  MSA EA  +G+VD V    ID
Sbjct: 142 LEVEELHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEAKAYGLVDIVGDEMID 199


>gi|224534499|ref|ZP_03675075.1| Clp protease [Borrelia spielmanii A14S]
 gi|224514176|gb|EEF84494.1| Clp protease [Borrelia spielmanii A14S]
          Length = 198

 Score =  131 bits (329), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 66/174 (37%), Positives = 107/174 (61%)

Query: 40  LKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           LK R + + G+I   ++ L   ++L LE  + +K I +YI+S GG + AG AI++ ++F+
Sbjct: 21  LKSRSIVIAGEITKDVSRLFQEKILLLETLDFKKPIFVYIDSEGGDIDAGFAIFNMIRFV 80

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
           KP + T  +G  AS  +L+  A +   RF+LP AR LLHQP  GF G A+DIE +  ++ 
Sbjct: 81  KPKVFTVGVGLVASAAALIFLAAKLENRFSLPFARYLLHQPLSGFKGVATDIEIYTNELN 140

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
           K+K+ LN I  K  G+   ++EK  DRD  + +S A  +G+V +V+ ++  +EE
Sbjct: 141 KLKKELNNIISKETGQNISKIEKDTDRDFWLDSSSAKKYGLVFEVVETKCQLEE 194


>gi|226292665|gb|EEH48085.1| ATP-dependent Clp protease proteolytic subunit [Paracoccidioides
           brasiliensis Pb18]
          Length = 137

 Score =  131 bits (329), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 59/116 (50%), Positives = 88/116 (75%), Gaps = 2/116 (1%)

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           M +I  P+ST C+GQAASMGSLLL  G  G RF LP++ +++HQPSGG+ GQA+DI  HA
Sbjct: 1   MTYISAPVSTICVGQAASMGSLLLCGGHPGKRFCLPHSSVMVHQPSGGYFGQATDIAIHA 60

Query: 156 QDIVKIKRRLNEIYVKNCGK--TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           ++I++++R+LNEIY ++  K  + +E+EK ++RD+ M A EA + G+VD++L  RI
Sbjct: 61  KEILRVRRQLNEIYKRHLKKEMSLDEIEKWMERDYFMGAKEALEMGIVDEILDRRI 116


>gi|290790864|gb|ADD63120.1| clp protease proteolytic subunit [Microlaena stipoides]
          Length = 216

 Score =  131 bits (329), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 67/178 (37%), Positives = 105/178 (58%), Gaps = 1/178 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+ + +ER +F+  +I   +   I   +++L  E+   +I L+INSPGG + +GMAI+
Sbjct: 22  DLYNVMYRERTLFLGQEIRGEITNHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAIF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           DTMQ + P I T C+G AASM S +L  GE   R A P+ARI+LHQP S  +  +  +  
Sbjct: 82  DTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFL 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
              +++ K++  +  +Y    GK +  V + ++RD  MSA EA  +G+VD V    ID
Sbjct: 142 LEVEELHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEAKAYGLVDIVGDEMID 199


>gi|70954204|ref|XP_746160.1| ATP-dependent CLP protease [Plasmodium chabaudi chabaudi]
 gi|56526687|emb|CAH78759.1| ATP-dependent CLP protease, putative [Plasmodium chabaudi chabaudi]
          Length = 240

 Score =  131 bits (329), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 67/171 (39%), Positives = 106/171 (61%), Gaps = 1/171 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
             K+RI+++T +I    +  +  QLL+L+  N   +I +YINSPGG +  G+AI D   +
Sbjct: 60  FFKKRIIYLTDEINKKTSDELIKQLLYLDNIN-HNDIKIYINSPGGSINEGLAILDIFNY 118

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           IK  I T   G  ASM S++L++G+KG R + PN RI++HQP G   G   DIE   ++I
Sbjct: 119 IKSDIQTISFGLVASMASVILASGKKGKRKSFPNCRIMIHQPLGNAFGHPHDIEIQTKEI 178

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           + +K+ L     K   K+ E +EK  DRD+ M+A EA ++G+VD+V+ +++
Sbjct: 179 LYLKKLLYYYLSKFTNKSEETIEKHSDRDYYMNALEAKEYGIVDEVVETKL 229


>gi|229815654|ref|ZP_04445981.1| hypothetical protein COLINT_02705 [Collinsella intestinalis DSM
           13280]
 gi|229808884|gb|EEP44659.1| hypothetical protein COLINT_02705 [Collinsella intestinalis DSM
           13280]
          Length = 199

 Score =  131 bits (329), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 66/194 (34%), Positives = 114/194 (58%), Gaps = 4/194 (2%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++ +T+RG     IY  LL+ER + ++G+IE  MA+ +C  +LFLE E+P   I+L++
Sbjct: 8   PSILRETSRGLERTSIYDELLRERTLVISGEIEPLMASALCQHVLFLEREDPSSPITLFV 67

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           +SPGG V  G+AIYD ++ +  PI T C   AASMGS++  AG++  R   P+A +++H 
Sbjct: 68  SSPGGQVGPGLAIYDVLRSVSCPIRTVCGDLAASMGSIIFMAGDE--REMYPHASLMIHD 125

Query: 140 P--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           P    G  G A  ++  ++ +++ +R LN I  +  G   + ++    +D  + A  A D
Sbjct: 126 PLIPQGAGGSALALQETSKRLMERRRTLNTILAERSGLALKRIQSLTCKDTYLEAERALD 185

Query: 198 WGVVDKVLMSRIDI 211
            G   +++ SR ++
Sbjct: 186 LGFATRIIESRKEL 199


>gi|77409468|ref|ZP_00786161.1| Clp protease [Streptococcus agalactiae COH1]
 gi|77171935|gb|EAO75111.1| Clp protease [Streptococcus agalactiae COH1]
          Length = 118

 Score =  130 bits (328), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 60/104 (57%), Positives = 79/104 (75%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TGQ+ED+MA  I AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGQVEDNMANSIIAQLLFLDAQDNTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSA 121
           Y+N+PGG V+AG+AI DTM FIK  + T   G       LLL  
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKSDVQTMLWGWLLRWEPLLLQV 104


>gi|51599007|ref|YP_073195.1| ATP-dependent Clp protease proteolytic subunit [Borrelia garinii
           PBi]
 gi|51573578|gb|AAU07603.1| ATP-dependent Clp protease proteolytic component [Borrelia garinii
           PBi]
          Length = 198

 Score =  130 bits (328), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 66/175 (37%), Positives = 107/175 (61%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           +LK R + + G+I   ++ L   ++L LE  + +K I +YI+S GG + AG AI++ ++F
Sbjct: 20  ILKSRSIVIAGEITKDVSRLFQEKILLLETLDFKKPIFVYIDSEGGDIDAGFAIFNMIRF 79

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           +KP + T  +G  AS  +L+  A +   RF+LP AR LLHQP  GF G A+DIE +  ++
Sbjct: 80  VKPKVFTVGVGLVASAAALIFLAAKLENRFSLPFARYLLHQPLSGFKGVATDIEIYTNEL 139

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
            K+K+ LN I  K  G+    +EK  DRD  + +S A  +G+V +V+ ++  +EE
Sbjct: 140 NKVKKELNNIISKETGQEISTIEKDTDRDFWLDSSAAKKYGLVFEVVETKCQLEE 194


>gi|118430411|ref|YP_874677.1| clp protease proteolytic subunit [Hordeum vulgare subsp. vulgare]
 gi|126302533|sp|P48883|CLPP_HORVU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|118201065|gb|ABK79436.1| clp protease proteolytic subunit [Hordeum vulgare subsp. vulgare]
          Length = 216

 Score =  130 bits (328), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 67/178 (37%), Positives = 105/178 (58%), Gaps = 1/178 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+ + +ER +F+  +I   +   I   +++L  E+   +I L+INSPGG + +GMAI+
Sbjct: 22  DLYNVMYRERTLFLGQEIRCEITNHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAIF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           DTMQ + P I T C+G AASM S +L  GE   R A P+ARI+LHQP S  +  +  +  
Sbjct: 82  DTMQTVTPDIYTICLGIAASMASFILLGGEPAKRIAFPHARIMLHQPASAYYRARTPEFL 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
              +++ K++  +  +Y    GK +  V + ++RD  MSA EA  +G+VD V    ID
Sbjct: 142 LEVEELHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEAKAYGLVDIVGDEMID 199


>gi|308813209|ref|XP_003083911.1| putative ATP-dependent Clp protease proteolytic subunit (ISS)
           [Ostreococcus tauri]
 gi|116055793|emb|CAL57878.1| putative ATP-dependent Clp protease proteolytic subunit (ISS)
           [Ostreococcus tauri]
          Length = 292

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 68/190 (35%), Positives = 116/190 (61%), Gaps = 4/190 (2%)

Query: 19  VPMVVEQTNRGERSY---DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           VP V  +T   E S+   DI++ L +ERI+++   I++ +   + A +LFL++ +  K +
Sbjct: 97  VPRVPYKTPN-ESSWQWVDIWNCLYRERIIWIGQTIDEELGNQLVATMLFLDSVDRNKPM 155

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYI S GG +   MAI DTM+ +K  + T   G A +MG LLL++G+KG R ALPN  I
Sbjct: 156 YLYITSEGGQIVPTMAIMDTMKHLKAEVGTVGFGSARAMGGLLLASGKKGKRAALPNTCI 215

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +LH PSG   G ASD++   +++++I+ ++N+      G+  + V + + RD   +  +A
Sbjct: 216 MLHHPSGVARGSASDVQNEGKELMRIRSQINKKISDITGRPVDVVSEEIRRDKHFTPEQA 275

Query: 196 CDWGVVDKVL 205
            ++G++DK+L
Sbjct: 276 LEYGIIDKIL 285


>gi|219684459|ref|ZP_03539403.1| Clp protease [Borrelia garinii PBr]
 gi|219685608|ref|ZP_03540424.1| Clp protease [Borrelia garinii Far04]
 gi|219672448|gb|EED29501.1| Clp protease [Borrelia garinii PBr]
 gi|219672886|gb|EED29909.1| Clp protease [Borrelia garinii Far04]
          Length = 198

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 66/175 (37%), Positives = 107/175 (61%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           +LK R + + G+I   ++ L   ++L LE  + +K I +YI+S GG + AG AI++ ++F
Sbjct: 20  VLKSRSIVIAGEITKDVSRLFQEKILLLETLDFKKPIFVYIDSEGGDIDAGFAIFNMIRF 79

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           +KP + T  +G  AS  +L+  A +   RF+LP AR LLHQP  GF G A+DIE +  ++
Sbjct: 80  VKPKVFTVGVGLVASAAALIFLAAKLENRFSLPFARYLLHQPLSGFKGVATDIEIYTNEL 139

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
            K+K+ LN I  K  G+    +EK  DRD  + +S A  +G+V +V+ ++  +EE
Sbjct: 140 NKVKKELNSIISKETGQDISTIEKDTDRDFWLDSSAAKKYGLVFEVVETKWQLEE 194


>gi|262201604|ref|YP_003272812.1| endopeptidase Clp [Gordonia bronchialis DSM 43247]
 gi|262084951|gb|ACY20919.1| Endopeptidase Clp [Gordonia bronchialis DSM 43247]
          Length = 231

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 97/166 (58%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           L  +RI+ +   ++D + + +CAQ++ L  E+P  +I+L+INSPGG V A +AI DTM+ 
Sbjct: 45  LRTQRILLLDTALDDEIGSELCAQMVLLSVEDPVADIALWINSPGGSVPAMLAIMDTMRL 104

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           I   I T  +G A S G  LL  G  G RF LP+A++LLHQ S G  G A DIE  A D+
Sbjct: 105 IPNDIRTVNLGMAYSAGQFLLCCGTAGKRFILPHAKVLLHQGSAGIGGYAPDIELQADDL 164

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             ++  +  I  +  G+  E V     RDH+ +A EA  +G VD +
Sbjct: 165 RHVRDTVLGIIAEQTGQPPERVFDDSLRDHVFTADEAIAYGFVDHL 210


>gi|116872513|ref|YP_849294.1| ATP-dependent Clp protease proteolytic subunit [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|116741391|emb|CAK20515.1| ATP-dependent Clp protease subunit ClpP [Listeria welshimeri
           serovar 6b str. SLCC5334]
          Length = 190

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 66/187 (35%), Positives = 118/187 (63%), Gaps = 1/187 (0%)

Query: 22  VVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS 81
           ++E  N    +  +  +++  R V + G+I   +A  +  QLL LE+ + +  I+++INS
Sbjct: 1   MIENKNNENITNILTQKMIDTRTVLIYGEINQELAEEVSKQLLLLESISDEP-ITIFINS 59

Query: 82  PGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
            GG V AG  I+D ++FIKP +     G  AS G  +  A EK  RF+LPN R ++HQP+
Sbjct: 60  QGGHVEAGDTIHDMIKFIKPTVKVVGTGWVASAGITIYLAAEKENRFSLPNTRYMIHQPA 119

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
           GG  GQ+++IE  A++I++++ R+N +  +  G++YE++ K  DR+  +S +EA D+G+V
Sbjct: 120 GGVQGQSTEIEIEAKEIIRMRERINRLIAEATGQSYEKISKDTDRNFWLSVNEAKDYGIV 179

Query: 202 DKVLMSR 208
           ++++ +R
Sbjct: 180 NEIIQNR 186


>gi|118430326|ref|YP_874761.1| clp protease proteolytic subunit [Agrostis stolonifera]
 gi|125863779|sp|A1EA33|CLPP_AGRST RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|118201235|gb|ABK79604.1| clp protease proteolytic subunit [Agrostis stolonifera]
          Length = 216

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 65/172 (37%), Positives = 104/172 (60%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+ + +ER +F+  +I   +   I   +++L  E+   +I L+INSPGG + +GMAI+
Sbjct: 22  DLYNVMYRERTLFLGQEIRCEITNHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAIF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           DTMQ + P I T C+G AASM S +L  GE   R A P+ARI+LHQP S  +  +  +  
Sbjct: 82  DTMQTVTPDIYTICLGVAASMASFVLIGGEPTKRIAFPHARIMLHQPASAYYRARTPEFL 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
              +++ K++  + ++Y    GK +  V + ++RD  MSA EA  +G+VD V
Sbjct: 142 LEVEELHKVREMITKVYALRTGKPFWVVSEDMERDVFMSADEAKAYGLVDIV 193


>gi|221132127|ref|XP_002163612.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 112

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 59/92 (64%), Positives = 77/92 (83%)

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           GVVTAG+AIYDTMQFI+PPI+T+C+GQA SMGSLLL++G KG+R ALP++RI+LHQP GG
Sbjct: 1   GVVTAGLAIYDTMQFIEPPIATWCVGQACSMGSLLLASGSKGLRHALPHSRIMLHQPHGG 60

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGK 175
             GQA+DI   A++I+ +K  LN+IY  + GK
Sbjct: 61  VQGQATDIAIQAKEILHLKTMLNKIYSIHTGK 92


>gi|253729580|ref|YP_003029763.1| ClpP [Bambusa oldhamii]
 gi|246367090|gb|ACS94701.1| ClpP [Bambusa oldhamii]
 gi|307697231|gb|ADN86070.1| clp protease proteolytic subunit [Chasmanthium latifolium]
          Length = 216

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 67/178 (37%), Positives = 105/178 (58%), Gaps = 1/178 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+ + +ER +F+  +I   +   I   +++L  E+   +I L+INSPGG + +GMAI+
Sbjct: 22  DLYNVMYRERTLFLGQEIRCEITNHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAIF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           DTMQ + P I T C+G AASM S +L  GE   R A P+ARI+LHQP S  +  +  +  
Sbjct: 82  DTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFL 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
              +++ K++  +  +Y    GK +  V + ++RD  MSA EA  +G+VD V    ID
Sbjct: 142 LEVEELHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEAKAYGLVDIVGDEMID 199


>gi|295065752|ref|YP_003587692.1| ATP-dependent Clp protease proteolytic subunit [Anomochloa
           marantoidea]
 gi|251765276|gb|ACT15430.1| ATP-dependent Clp protease proteolytic subunit [Anomochloa
           marantoidea]
          Length = 219

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 67/178 (37%), Positives = 104/178 (58%), Gaps = 1/178 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+ + +ER +F+  +I   +   I   +++L  E+   +I L+INSPGG + +GMAI+
Sbjct: 22  DLYNVMYRERTLFLGQEIRAEITGHITGLMVYLSIEDGNSDIYLFINSPGGWLISGMAIF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           DTMQ + P I T C+G AASM S +L  GE   R A P+AR +LHQP S  +  +  +  
Sbjct: 82  DTMQTVTPDIYTICIGIAASMASFILLGGEPACRIAFPHARNMLHQPASAYYRARTREFF 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
              +++ K+K  +  +Y    GK +  V + ++RD  MSA EA  +G+VD V    ID
Sbjct: 142 AEVEELHKVKDMITRVYALRTGKPFWVVSEDMERDVFMSADEAKAYGLVDAVGDEMID 199


>gi|194033171|ref|YP_002000510.1| ATP-dependent Clp protease proteolytic subunit [Brachypodium
           distachyon]
 gi|193075579|gb|ACF08662.1| ATP-dependent protease proteolytic subunit [Brachypodium
           distachyon]
          Length = 216

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 109/189 (57%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGERS--YDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  Q    E +   D+Y+ + +ER +F+  +I   +   I   +++L  E+   +I 
Sbjct: 5   VPKVPYQIPGDEEATWVDLYNVMYRERTLFLGQEIRCEITNHITGLMVYLSIEDGISDIF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG + +GMAI+DTMQ + P I T C+G AASM S +L  GE   R A P+ARI+
Sbjct: 65  LFINSPGGWLISGMAIFDTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           LHQP S  +  +  +     +++ K++  +  +Y    GK +  V + ++RD  MSA EA
Sbjct: 125 LHQPASAYYRARTPEFLLEVEELHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEA 184

Query: 196 CDWGVVDKV 204
             +G+VD V
Sbjct: 185 KAYGLVDIV 193


>gi|255961406|ref|YP_003097599.1| Clp protease proteolytic subunit [Dendrocalamus latiflorus]
 gi|255040283|gb|ACT99943.1| Clp protease proteolytic subunit [Dendrocalamus latiflorus]
          Length = 216

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 67/178 (37%), Positives = 105/178 (58%), Gaps = 1/178 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+ + +ER +F+  +I   +   I   +++L  E+   +I L+INSPGG + +GMAI+
Sbjct: 22  DLYNVMYRERTLFLGQEIRCEITNHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAIF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           DTMQ + P I T C+G AASM S +L  GE   R A P+ARI+LHQP S  +  +  +  
Sbjct: 82  DTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFF 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
              +++ K++  +  +Y    GK +  V + ++RD  MSA EA  +G+VD V    ID
Sbjct: 142 LEVEELHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEAKAYGLVDIVGDEMID 199


>gi|14017596|ref|NP_114282.1| ATP-dependent Clp protease proteolytic subunit [Triticum aestivum]
 gi|17374148|sp|P24064|CLPP_WHEAT RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|13928229|dbj|BAB47058.1| ATP-dependent protease proteolytic subunit [Triticum aestivum]
          Length = 216

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 67/178 (37%), Positives = 105/178 (58%), Gaps = 1/178 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+ + +ER +F+  +I   +   I   +++L  E+   +I L+INSPGG + +GMAI+
Sbjct: 22  DLYNVMYRERTLFLGQEIRCEITNHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAIF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           DTMQ + P I T C+G AASM S +L  GE   R A P+ARI+LHQP S  +  +  +  
Sbjct: 82  DTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFL 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
              +++ K++  +  +Y    GK +  V + ++RD  MSA EA  +G+VD V    ID
Sbjct: 142 LEVEELHKVREMITRVYAVRTGKPFWVVSEDMERDVFMSADEAKAYGLVDIVGDEMID 199


>gi|159106888|ref|YP_001531306.1| clp protease proteolytic subunit [Lolium perenne]
 gi|158934422|emb|CAO86000.1| clp protease proteolytic subunit [Lolium perenne]
          Length = 216

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 67/178 (37%), Positives = 105/178 (58%), Gaps = 1/178 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+ + +ER +F+  +I   +   I   +++L  E+   +I L+INSPGG + +GMAI+
Sbjct: 22  DLYNVMYRERTLFLGQEIRCEITNHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAIF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           DTMQ + P I T C+G AASM S +L  GE   R A P+ARI+LHQP S  +  +  +  
Sbjct: 82  DTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFL 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
              +++ K++  +  +Y    GK +  V + ++RD  MSA EA  +G+VD V    ID
Sbjct: 142 LEVEELHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEAKAYGLVDIVGDEMID 199


>gi|197106599|ref|YP_002131976.1| protease subunit of ATP-dependent Clp protease [Phenylobacterium
           zucineum HLK1]
 gi|196480019|gb|ACG79547.1| protease subunit of ATP-dependent Clp protease [Phenylobacterium
           zucineum HLK1]
          Length = 205

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/180 (40%), Positives = 110/180 (61%), Gaps = 1/180 (0%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           S  + + L K R V V G+I+  +A  + AQL  L AE+  K I + INSPGG V +G  
Sbjct: 27  SGPVQNALFKSRTVLVFGEIDMRLAERVTAQLTALAAES-DKPIRMIINSPGGHVESGDT 85

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           I+D +QF   P++    G  AS G+ +     K  R  LPN R LLHQP+GG  GQASDI
Sbjct: 86  IHDMIQFSPAPVTVIGTGWVASAGAHIYLGAPKEHRLCLPNTRFLLHQPAGGVRGQASDI 145

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           E  A++I+K++ R+N +  +  G++YE+V+K   R+  MSA +A ++G+V +++ +  +I
Sbjct: 146 EIEAEEIIKMRERVNRMIARETGQSYEKVDKDTTRNFWMSAEQAVEYGLVSRIIKNTAEI 205


>gi|50233996|ref|YP_052774.1| ATP-dependent Clp protease proteolytic subunit [Oryza nivara]
 gi|109156611|ref|YP_654230.1| ATP-dependent Clp protease proteolytic subunit [Oryza sativa Indica
           Group]
 gi|68052132|sp|Q6ENE9|CLPP_ORYNI RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|148841130|sp|P0C312|CLPP_ORYSA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|148841131|sp|P0C313|CLPP_ORYSI RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|148841132|sp|P0C314|CLPP_ORYSJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|42795503|gb|AAS46070.1| ATP-dependent Clp protease proteolytic subunit [Oryza sativa Indica
           Group]
 gi|42795570|gb|AAS46136.1| ATP-dependent Clp protease proteolytic subunit [Oryza sativa
           Japonica Group]
 gi|42795634|gb|AAS46199.1| ATP-dependent Clp protease proteolytic subunit [Oryza sativa
           Japonica Group]
 gi|49615020|dbj|BAD26803.1| ATP-dependent Clp protease proteolytic subunit [Oryza nivara]
 gi|290790590|gb|ADD62850.1| clp protease proteolytic subunit [Oryza sativa Japonica Group]
 gi|290790659|gb|ADD62918.1| clp protease proteolytic subunit [Oryza meridionalis]
 gi|290790728|gb|ADD62986.1| clp protease proteolytic subunit [Oryza australiensis]
          Length = 216

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 65/172 (37%), Positives = 103/172 (59%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+ + +ER +F+  +I   +   I   +++L  E+   +I L+INSPGG + +GMAI+
Sbjct: 22  DLYNVMYRERTLFLGQEIRCEVTNHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAIF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           DTMQ + P I T C+G AASM S +L  GE   R A P+ARI+LHQP S  +  +  +  
Sbjct: 82  DTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFL 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
              +++ K++  +  +Y    GK +  V + ++RD  MSA EA  +G+VD V
Sbjct: 142 LEVEELHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEAKAYGLVDIV 193


>gi|193875736|gb|ACF24504.1| chloroplast ATP-dependent Clp protease proteolytic subunit 2
           [Gymnochlora stellata]
          Length = 240

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 59/170 (34%), Positives = 101/170 (59%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           L K RI+F TG+I D ++  I   L++  + + +  I   INSPGG +++G+AIYD +  
Sbjct: 39  LKKNRIIFCTGEINDLVSNTIVNHLVYFSSLSDKDAIKFIINSPGGNISSGLAIYDAITI 98

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
            K  ++T+ +G +AS+G  LL  G    RF+ PN+RI++HQP GG  G   DIE   +++
Sbjct: 99  SKLTLNTYSIGISASIGCFLLCIGSPNRRFSFPNSRIMIHQPFGGIQGTPIDIEIQTKEL 158

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           +  +  LN +   +   + E++EK  D +   +  EA  +G++DK+L+ +
Sbjct: 159 IIQRSNLNYLIACHTNNSIEKIEKDTDFEKYFTPHEALRYGIIDKILIKK 208


>gi|289434382|ref|YP_003464254.1| ATP-dependent Clp protease, proteolytic subunit, ClpP family
           [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289170626|emb|CBH27166.1| ATP-dependent Clp protease, proteolytic subunit, ClpP family
           [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|313633774|gb|EFS00515.1| Clp protease [Listeria seeligeri FSL N1-067]
          Length = 190

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/171 (38%), Positives = 111/171 (64%), Gaps = 1/171 (0%)

Query: 38  RLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97
           +L+  R V + G+I   +A  +  QLL LE+ + +  I+++INS GG V AG  I+D ++
Sbjct: 17  KLIDTRTVLIYGEINQELAEDVSKQLLLLESISDEP-ITVFINSQGGHVEAGDTIHDMIK 75

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
           FIKP +     G  AS G  +  A EK  RF+LPN R ++HQP+GG  GQ+++IE  A++
Sbjct: 76  FIKPTVKVVGTGWVASAGITIYLAAEKENRFSLPNTRYMIHQPAGGVQGQSTEIEIEAKE 135

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           I++++ R+N +  +  G+TYE++ K  DR+  +S +EA D+G+V +++ +R
Sbjct: 136 IIRMRERINRLIAEATGQTYEKISKDTDRNFWLSVNEAKDYGIVSEIIENR 186


>gi|224531790|ref|ZP_03672422.1| Clp protease [Borrelia valaisiana VS116]
 gi|224511255|gb|EEF81661.1| Clp protease [Borrelia valaisiana VS116]
          Length = 198

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 65/175 (37%), Positives = 107/175 (61%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           +LK R + + G+I   ++ L   ++L LE  + +K I +YI+S GG + AG AI++ ++F
Sbjct: 20  VLKSRSIVIAGEITKDVSRLFQEKILLLETLDFKKPIFVYIDSEGGDIDAGFAIFNMIRF 79

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           +KP + T  +G  AS  +L+  A +   RF+LP AR LLHQP  GF G A+DIE +  ++
Sbjct: 80  VKPKVFTVGVGLVASAAALIFLAAKLENRFSLPFARYLLHQPLSGFKGVATDIEIYTNEL 139

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
            K+K+ LN I  K  G+   ++EK  DRD  + +  A  +G+V +V+ ++  +EE
Sbjct: 140 NKVKKELNNIISKETGQKISKIEKDTDRDFWLDSGAAKKYGLVFEVVETKCQLEE 194


>gi|313635706|gb|EFS01800.1| Clp protease [Listeria seeligeri FSL S4-171]
          Length = 190

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/171 (38%), Positives = 111/171 (64%), Gaps = 1/171 (0%)

Query: 38  RLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97
           +L+  R V + G+I   +A  +  QLL LE+ + +  I+++INS GG V AG  I+D ++
Sbjct: 17  KLIDTRTVLIYGEINQELAEDVSKQLLLLESISDEP-ITVFINSQGGHVEAGDTIHDMIK 75

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
           FIKP +     G  AS G  +  A EK  RF+LPN R ++HQP+GG  GQ+++IE  A++
Sbjct: 76  FIKPTVKVVGTGWVASAGITIYLAAEKENRFSLPNTRYMIHQPAGGVQGQSTEIEIEAKE 135

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           I++++ R+N +  +  G+TYE++ K  DR+  +S +EA D+G+V +++ +R
Sbjct: 136 IIRMRERINRLIAEATGQTYEKISKDTDRNFWLSVNEAKDYGIVSEIIENR 186


>gi|302835159|ref|XP_002949141.1| hypothetical protein VOLCADRAFT_120717 [Volvox carteri f.
           nagariensis]
 gi|300265443|gb|EFJ49634.1| hypothetical protein VOLCADRAFT_120717 [Volvox carteri f.
           nagariensis]
          Length = 288

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 70/188 (37%), Positives = 109/188 (57%), Gaps = 2/188 (1%)

Query: 25  QTNRGERS--YDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSP 82
           Q  +GE +   D+Y  LL  RI+FV G I D MAT I   LL LEA +  ++I LYINSP
Sbjct: 70  QIGQGEDAIQMDLYRYLLTNRIIFVGGYINDKMATQIVGSLLALEAIDENEDIRLYINSP 129

Query: 83  GGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSG 142
           GG   + + + D +Q IKP + T  +G   S  SLLL++G KG R+A+ N RI++ QP G
Sbjct: 130 GGQPYSVLGVVDAIQSIKPDVQTVALGACYSYSSLLLASGTKGKRYAMKNTRIMMTQPMG 189

Query: 143 GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
           G  G    I++  +++  I +  +  Y++  G + + VE+   RD+ M+  +A   G++D
Sbjct: 190 GSQGDIYQIKKTVEELNAIYQIFSRYYMRFTGMSQDAVEQATCRDYFMTPEQAKMEGLID 249

Query: 203 KVLMSRID 210
            ++  + D
Sbjct: 250 DIIRGKGD 257


>gi|16803178|ref|NP_464663.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes EGD-e]
 gi|47094980|ref|ZP_00232593.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           monocytogenes str. 1/2a F6854]
 gi|224502566|ref|ZP_03670873.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes FSL R2-561]
 gi|254828498|ref|ZP_05233185.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes FSL N3-165]
 gi|254830108|ref|ZP_05234763.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes 10403S]
 gi|254898700|ref|ZP_05258624.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes J0161]
 gi|254911811|ref|ZP_05261823.1| ATP-dependent Clp protease [Listeria monocytogenes J2818]
 gi|254936136|ref|ZP_05267833.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes F6900]
 gi|255026166|ref|ZP_05298152.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes FSL J2-003]
 gi|284801459|ref|YP_003413324.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes 08-5578]
 gi|284994601|ref|YP_003416369.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes 08-5923]
 gi|16410554|emb|CAC99216.1| lmo1138 [Listeria monocytogenes EGD-e]
 gi|47016598|gb|EAL07518.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           monocytogenes str. 1/2a F6854]
 gi|258600894|gb|EEW14219.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes FSL N3-165]
 gi|258608725|gb|EEW21333.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes F6900]
 gi|284057021|gb|ADB67962.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes 08-5578]
 gi|284060068|gb|ADB71007.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes 08-5923]
 gi|293589764|gb|EFF98098.1| ATP-dependent Clp protease [Listeria monocytogenes J2818]
          Length = 190

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/173 (38%), Positives = 112/173 (64%), Gaps = 5/173 (2%)

Query: 38  RLLKERIVFVTGQIEDHMATLICAQLLFLEA--ENPQKEISLYINSPGGVVTAGMAIYDT 95
           +L+  R V + G+I   +A  +  QLL LE+   +P   I+++INS GG V AG  I+D 
Sbjct: 17  KLIDTRTVLIYGEINQELAEDVSKQLLLLESISNDP---ITIFINSQGGHVEAGDTIHDM 73

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           ++FIKP +     G  AS G  +  A EK  RF+LPN R ++HQP+GG  GQ+++IE  A
Sbjct: 74  IKFIKPTVKVVGTGWVASAGITIYLAAEKENRFSLPNTRYMIHQPAGGVQGQSTEIEIEA 133

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           ++I++++ R+N +  +  G++YE++ K  DR+  +S +EA D+G+V++++ +R
Sbjct: 134 KEIIRMRERINRLIAEATGQSYEQISKDTDRNFWLSVNEAKDYGIVNEIIENR 186


>gi|224500753|ref|ZP_03669102.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes Finland 1988]
          Length = 190

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/173 (38%), Positives = 112/173 (64%), Gaps = 5/173 (2%)

Query: 38  RLLKERIVFVTGQIEDHMATLICAQLLFLEA--ENPQKEISLYINSPGGVVTAGMAIYDT 95
           +L+  R V + G+I   +A  +  QLL LE+   +P   I+++INS GG V AG  I+D 
Sbjct: 17  KLIDTRTVLIYGEINQELAEDVSKQLLLLESISNDP---ITIFINSQGGHVEAGDTIHDM 73

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           ++FIKP +     G  AS G  +  A EK  RF+LPN R ++HQP+GG  GQ+++IE  A
Sbjct: 74  IKFIKPTVKVVGTGWVASAGITIYLAAEKENRFSLPNTRYMIHQPAGGVQGQSTEIEIEA 133

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           ++I++++ R+N +  +  G++YE++ K  DR+  +S +EA D+G+V++++ +R
Sbjct: 134 KEIIRMRERINRLIAEATGQSYEQISKDTDRNFWLSVNEAKDYGIVNEIIENR 186


>gi|315302638|ref|ZP_07873441.1| Clp protease [Listeria ivanovii FSL F6-596]
 gi|313628992|gb|EFR97322.1| Clp protease [Listeria ivanovii FSL F6-596]
          Length = 190

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/171 (38%), Positives = 110/171 (64%), Gaps = 1/171 (0%)

Query: 38  RLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97
           +L+  R V + G+I   +A  +  QLL LE+ + +  I+++INS GG V AG  I+D ++
Sbjct: 17  KLIDTRTVLIYGEINQELAEDVSKQLLLLESISDEP-ITIFINSQGGHVEAGDTIHDMIK 75

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
           FIKP +     G  AS G  +  A EK  RF+LPN R ++HQP+GG  GQ+++IE  A++
Sbjct: 76  FIKPTVKVVGTGWVASAGITIYLAAEKENRFSLPNTRYMIHQPAGGVQGQSTEIEIEAKE 135

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           I++++ R+N +     G+TYE++ K  DR+  +S +EA D+G+V +++ +R
Sbjct: 136 IIRMRERINRLXXXXTGQTYEKISKDTDRNFWLSVNEAKDYGIVSEIIENR 186


>gi|86139431|ref|ZP_01058000.1| ATP-dependent Clp protease proteolytic subunit [Roseobacter sp.
           MED193]
 gi|85823934|gb|EAQ44140.1| ATP-dependent Clp protease proteolytic subunit [Roseobacter sp.
           MED193]
          Length = 197

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 68/193 (35%), Positives = 112/193 (58%), Gaps = 4/193 (2%)

Query: 18  LVPMVVEQTNRGER---SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
           + P +++ T + E    +  + +   + R V V G+I D +A    A LL L AE     
Sbjct: 1   MFPKMLDDTEKREARLGTGKVDALFFQSRTVIVAGEINDKLAQRTVAHLLAL-AEESDDP 59

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I+++I+SPGG V +G  ++D + FI+P + T   G  AS G+L+    ++  R+ LPN R
Sbjct: 60  INIFISSPGGHVESGDMVHDVIGFIRPKVRTIGTGWVASAGALIYVGAKQENRYCLPNTR 119

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
            LLHQPSGG  GQASD+   A+ I  +++R + ++ +  G+T E++E    RD  ++A E
Sbjct: 120 FLLHQPSGGIGGQASDMLIQAEQIKIMRQRFDLLFAEATGQTPEKIEADTARDFWLTAQE 179

Query: 195 ACDWGVVDKVLMS 207
           A D+G+  K++ S
Sbjct: 180 AIDYGLAGKIIHS 192


>gi|315281892|ref|ZP_07870418.1| Clp protease [Listeria marthii FSL S4-120]
 gi|313614464|gb|EFR88082.1| Clp protease [Listeria marthii FSL S4-120]
          Length = 190

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/173 (38%), Positives = 112/173 (64%), Gaps = 5/173 (2%)

Query: 38  RLLKERIVFVTGQIEDHMATLICAQLLFLEA--ENPQKEISLYINSPGGVVTAGMAIYDT 95
           +L+  R V + G+I   +A  +  QLL LE+   +P   I+++INS GG V AG  I+D 
Sbjct: 17  KLIDTRTVLIYGEINQELAEDVSKQLLLLESISNDP---ITIFINSQGGHVEAGDTIHDM 73

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           ++FIKP +     G  AS G  +  A +K  RF+LPN R ++HQP+GG  GQ+++IE  A
Sbjct: 74  IKFIKPTVKVVGTGWVASAGITIYLAAKKENRFSLPNTRYMIHQPAGGVQGQSTEIEIEA 133

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           ++I++++ R+N +  K  G++YE++ K  DR+  +S +EA D+G+V++++ +R
Sbjct: 134 KEIIRMRERINRLIAKATGQSYEQISKDTDRNFWLSVNEAKDYGIVNEIIENR 186


>gi|294811360|ref|ZP_06770003.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           clavuligerus ATCC 27064]
 gi|326439908|ref|ZP_08214642.1| ATP-dependent Clp protease, protease subunit [Streptomyces
           clavuligerus ATCC 27064]
 gi|294323959|gb|EFG05602.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           clavuligerus ATCC 27064]
          Length = 220

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/191 (39%), Positives = 117/191 (61%), Gaps = 1/191 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P   E+T  G R+ D Y++LL+ RIVF+   ++D     + AQ L LE   P  EISLY
Sbjct: 24  LPEFHERTPYGPRTLDPYAKLLEGRIVFLGTPVDDIAVGDVIAQFLHLEYAQPDGEISLY 83

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG + A +AI+DT+Q I+  + T C+GQAA   +LLL+AG  G R  LP ARI L 
Sbjct: 84  INSPGGSLDAVLAIHDTVQLIRCTVETVCVGQAAGPAALLLAAGSPGRRLTLPGARIALS 143

Query: 139 QPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
            P+   + GQ SD+E HA ++++ + +   +  ++ G+    V   L+R  ++ A+ A +
Sbjct: 144 GPALEKTVGQPSDLELHAAELLRQRTQFTGLLARHTGRDERRVAADLERTTVLDAAGALE 203

Query: 198 WGVVDKVLMSR 208
           +G+VD++L  R
Sbjct: 204 YGLVDQILSRR 214


>gi|88770682|gb|ABD51944.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rhodomonas
           salina]
          Length = 262

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/174 (37%), Positives = 104/174 (59%), Gaps = 9/174 (5%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------GVVTAGMAIY 93
           RIV++   +   +  LI A+ L+L+ EN +K + +Y+NS G         G  T   AI 
Sbjct: 74  RIVYLGMPLVPAVTELIVAEFLYLQYENSEKPVFMYLNSTGTSNPDGSSAGFETEAFAIA 133

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           DTM ++KPP+ T C+GQA     +LLS+GE   R ALPNA I++HQP+    GQASDI  
Sbjct: 134 DTMNYVKPPVHTICVGQAFGTCVMLLSSGEPTHRAALPNATIMIHQPTARAKGQASDIAI 193

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
            A++++  +++  EI  +  G+  E+V K   R   ++ +EA ++G++DK+L S
Sbjct: 194 KAREVLYNRKQCFEIIAETSGQPLEKVMKDASRTKYLTPAEAVEYGIIDKILES 247


>gi|254823607|ref|ZP_05228608.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes FSL J1-194]
 gi|255522304|ref|ZP_05389541.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes FSL J1-175]
 gi|293592830|gb|EFG00591.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes FSL J1-194]
          Length = 190

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 65/171 (38%), Positives = 110/171 (64%), Gaps = 1/171 (0%)

Query: 38  RLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97
           +L+  R V + G+I   +A  +  QLL LE+      I+++INS GG V AG  I+D ++
Sbjct: 17  KLIDTRTVLIYGEINQELAEDVSKQLLLLESI-SNDSITIFINSQGGHVEAGDTIHDMIK 75

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
           FIKP +     G  AS G  +  A EK  RF+LPN R ++HQP+GG  GQ+++IE  A++
Sbjct: 76  FIKPTVKVVGTGWVASAGITIYLAAEKENRFSLPNTRYMIHQPAGGVQGQSTEIEIEAKE 135

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           I++++ R+N +  +  G++YE++ K  DR+  +S +EA D+G+V++++ +R
Sbjct: 136 IIRMRERINRLIAEATGQSYEKISKDTDRNFWLSVNEAKDYGIVNEIIENR 186


>gi|302524703|ref|ZP_07277045.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sp. AA4]
 gi|302433598|gb|EFL05414.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sp. AA4]
          Length = 204

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 103/168 (61%)

Query: 38  RLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97
           R L +R++ + G ++D   T++  Q+L L  E+P K+I+L+I+SPGG V + +AI D M+
Sbjct: 17  RFLSQRVLVLDGVLDDDNGTVLATQMLSLAGEDPVKDIALWIHSPGGSVPSMLAIRDVMR 76

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
            +   +ST  +G A S G  LLSAG  G RFALP+ARIL+HQ S G  G A ++E  A D
Sbjct: 77  LVPCDVSTLALGLACSAGQFLLSAGTPGKRFALPHARILMHQGSAGIGGSAVEVEVQADD 136

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           +   +  +  +  ++ G+ ++ +      D   +A+EA D+G +D+++
Sbjct: 137 LRYTRDTVLGLTAQDTGQPFDRIFADSLHDRWYTAAEAKDYGFIDQIV 184


>gi|239978196|ref|ZP_04700720.1| ATP-dependent Clp protease [Streptomyces albus J1074]
 gi|291450088|ref|ZP_06589478.1| ATP-dependent Clp protease proteolytic subunit 5 [Streptomyces
           albus J1074]
 gi|291353037|gb|EFE79939.1| ATP-dependent Clp protease proteolytic subunit 5 [Streptomyces
           albus J1074]
          Length = 212

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 68/192 (35%), Positives = 121/192 (63%), Gaps = 2/192 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P   E+T++G R+ D YS+L  ERIVF+   +++   + + AQ L LE  +P ++I LY
Sbjct: 14  LPEFTERTSQGSRTQDPYSKLFSERIVFLGRPVDEAGVSDVMAQFLHLEHADPDRDIQLY 73

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  +A  A+YDT+Q++   ++T C+GQA S  ++LL+AG  G R  LP +R ++ 
Sbjct: 74  INSPGGSFSAMTALYDTLQYVSCDVATTCLGQANSAAAVLLAAGAPGKRLMLPGSRAVIR 133

Query: 139 QP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           QP  +    GQ SD+   A ++++++  L E+  ++ G+  + + + ++RD  + A +A 
Sbjct: 134 QPALADPVQGQVSDLAIEAAELLRMRALLVELLARHTGRDRDRIAQDIERDLHLDARQAV 193

Query: 197 DWGVVDKVLMSR 208
           ++G+ D ++ SR
Sbjct: 194 EYGLADHLVGSR 205


>gi|11466814|ref|NP_039410.1| ATP-dependent Clp protease proteolytic subunit [Oryza sativa
           Japonica Group]
 gi|12012|emb|CAA33972.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|226633|prf||1603356BG ORF 216
          Length = 216

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 65/172 (37%), Positives = 103/172 (59%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+ + +ER +F+  +I   +   I   +++L  E+   +I L+INSPGG + +GMAI+
Sbjct: 22  DLYNVMYRERTLFLGQEIRCEVTNHITGLMVYLSIEDGSSDIFLFINSPGGWLISGMAIF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           DTMQ + P I T C+G AASM S +L  GE   R A P+ARI+LHQP S  +  +  +  
Sbjct: 82  DTMQTVTPNIYTTCLGIAASMPSFILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFL 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
              +++ K++  +  +Y    GK +  V + ++RD  MSA EA  +G+VD V
Sbjct: 142 LEVEELHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEAKAYGLVDIV 193


>gi|188534632|ref|YP_001908429.1| ATP-dependent Clp protease proteolytic subunit [Erwinia
           tasmaniensis Et1/99]
 gi|188029674|emb|CAO97553.1| Putative ATP-dependent Clp protease proteolytic subunit [Erwinia
           tasmaniensis Et1/99]
          Length = 198

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 67/189 (35%), Positives = 111/189 (58%), Gaps = 2/189 (1%)

Query: 20  PMVVEQTNRGERSYDI-YSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           P   E+  + E+S  +  ++LL+ R + ++G+I   +A  + AQLL L+ E   + I L+
Sbjct: 5   PEKKEENGQEEKSSALAVNKLLQSRSIIISGEINQALAEKVTAQLLILQ-EMGDEPIKLF 63

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INS GG V AG  I+D ++F++P +     G  AS G  +  A  K  R+ LPN R ++H
Sbjct: 64  INSQGGHVEAGDTIHDMIRFVRPEVLVIGTGWVASAGITIFLAANKENRYTLPNTRFMIH 123

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  G+ SDIE  A+++++ + R+N++     G+  E+VEK  D ++ MS  +A D+
Sbjct: 124 QPLGGVRGKVSDIEIEAKELLRARARINQLISNATGQPLEKVEKDTDSNYWMSPEQAIDY 183

Query: 199 GVVDKVLMS 207
           G+   V+ S
Sbjct: 184 GIATHVITS 192


>gi|46907356|ref|YP_013745.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes str. 4b F2365]
 gi|47091939|ref|ZP_00229733.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           monocytogenes str. 4b H7858]
 gi|254852989|ref|ZP_05242337.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes FSL R2-503]
 gi|254932981|ref|ZP_05266340.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes HPB2262]
 gi|254994469|ref|ZP_05276659.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes FSL J2-064]
 gi|300764285|ref|ZP_07074279.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           monocytogenes FSL N1-017]
 gi|46880623|gb|AAT03922.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|47019655|gb|EAL10394.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           monocytogenes str. 4b H7858]
 gi|258606332|gb|EEW18940.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes FSL R2-503]
 gi|293584539|gb|EFF96571.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes HPB2262]
 gi|300514937|gb|EFK41990.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           monocytogenes FSL N1-017]
 gi|328466729|gb|EGF37855.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes 1816]
 gi|328475174|gb|EGF45955.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes 220]
          Length = 190

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 66/173 (38%), Positives = 112/173 (64%), Gaps = 5/173 (2%)

Query: 38  RLLKERIVFVTGQIEDHMATLICAQLLFLEA--ENPQKEISLYINSPGGVVTAGMAIYDT 95
           +L+  R V + G+I   +A  +  QLL LE+   +P   I+++INS GG V AG  I+D 
Sbjct: 17  KLIDTRTVLIYGEINQELAEDVSKQLLLLESISNDP---ITIFINSQGGHVEAGDTIHDM 73

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           ++FIKP +     G  AS G  +  A EK  RF+LPN R ++HQP+GG  GQ+++IE  A
Sbjct: 74  IKFIKPTVKVVGTGWVASAGITIYLAAEKENRFSLPNTRYMIHQPAGGVQGQSTEIEIEA 133

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           ++I++++ R+N +  +  G++YE++ K  DR+  +S +EA D+G+V++++ +R
Sbjct: 134 KEIIRMRERINRLIAEATGQSYEKISKDTDRNFWLSVNEAKDYGIVNEIIENR 186


>gi|255071097|ref|XP_002507630.1| predicted protein [Micromonas sp. RCC299]
 gi|226522905|gb|ACO68888.1| predicted protein [Micromonas sp. RCC299]
          Length = 289

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 68/179 (37%), Positives = 107/179 (59%), Gaps = 8/179 (4%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG--------GV 85
           D+ S + KERIV++   +   +  LI A+LL+L+ E+  K I LYINS G        G 
Sbjct: 40  DLPSFIFKERIVYLGMTLVPSVTELILAELLYLQYEDKTKPIYLYINSTGTSKEGQKYGY 99

Query: 86  VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS 145
            T   AIYDT++++  P+ T  +G A    ++LL++GEKG R ALP+A I++ QP   F 
Sbjct: 100 DTEAFAIYDTIKYVNSPVHTVAVGTAWGEAAMLLASGEKGNRAALPSASIMIKQPIDAFR 159

Query: 146 GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           GQA+D+E   +++   K++  E+  K   K  EE+EK ++R    +  EA D+G++DK+
Sbjct: 160 GQATDLEIQRKEMRNTKKQTLELLSKGINKPIEELEKDINRPKYFNPWEAVDYGLIDKL 218


>gi|290790797|gb|ADD63054.1| clp protease proteolytic subunit [Potamophila parviflora]
          Length = 216

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 66/178 (37%), Positives = 104/178 (58%), Gaps = 1/178 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+ + +ER +F+  +I   +   I   +++L  E+   +I  +INSPGG + +GMAI+
Sbjct: 22  DLYNVMYRERTLFLGQEIRCEVTNHITGLMVYLSIEDGISDIFFFINSPGGWLISGMAIF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           DTMQ + P I T C+G AASM S +L  GE   R A P+ARI+LHQP S  +  +  +  
Sbjct: 82  DTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFL 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
              +++ K++  +  +Y    GK +  V + ++RD  MSA EA  +G+VD V    ID
Sbjct: 142 LEVEELHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEAKAYGLVDIVGDEMID 199


>gi|217964793|ref|YP_002350471.1| Clp protease [Listeria monocytogenes HCC23]
 gi|290894308|ref|ZP_06557274.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes FSL J2-071]
 gi|217334063|gb|ACK39857.1| Clp protease [Listeria monocytogenes HCC23]
 gi|290556127|gb|EFD89675.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes FSL J2-071]
 gi|307570646|emb|CAR83825.1| ATP-dependent Clp protease, proteolytic subunit [Listeria
           monocytogenes L99]
          Length = 190

 Score =  128 bits (322), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 66/173 (38%), Positives = 111/173 (64%), Gaps = 5/173 (2%)

Query: 38  RLLKERIVFVTGQIEDHMATLICAQLLFLEA--ENPQKEISLYINSPGGVVTAGMAIYDT 95
           +L+  R V + G+I   +A  +  QLL LE+   +P   I+++INS GG V AG  I+D 
Sbjct: 17  KLIDTRTVLIYGEINQELAEDVSKQLLLLESISNDP---ITIFINSQGGHVEAGDTIHDM 73

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           ++FIKP +     G  AS G  +  A EK  RF+LPN R ++HQP+GG  GQ+++IE  A
Sbjct: 74  IKFIKPTVKVVGTGWVASAGITIYLAAEKENRFSLPNTRYMIHQPAGGVQGQSTEIEIEA 133

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           ++I++++ R+N +  +  G++YE++ K  DR+  +S +EA D+G+V +++ +R
Sbjct: 134 KEIIRMRERINRLIAEATGQSYEQISKDTDRNFWLSVNEAKDYGIVSEIIENR 186


>gi|159466488|ref|XP_001691441.1| inactive subunit of chloroplast ClpP complex [Chlamydomonas
           reinhardtii]
 gi|158279413|gb|EDP05174.1| inactive subunit of chloroplast ClpP complex [Chlamydomonas
           reinhardtii]
          Length = 283

 Score =  128 bits (322), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 63/177 (35%), Positives = 104/177 (58%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y  LL  RI+F+ G I D MAT I   L+ LEA +  ++I +YINSPGG   + + + 
Sbjct: 76  DLYRYLLSNRIIFIGGYINDKMATQIVGSLMALEAVDENEDIRIYINSPGGQPYSVLGVV 135

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D MQ IKP + T  +G   S  SL+++AG KG R+A+ N R+++ QP GG  G    I+ 
Sbjct: 136 DAMQSIKPDVQTVALGACYSYASLVVAAGTKGKRYAMKNTRLMMTQPMGGSQGDIYQIKA 195

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
             +++  + +  +  Y+K  G   +++E+   RDH M+  +A   G++D+++  + D
Sbjct: 196 TVEELNALYQIFSRYYMKFTGMNQDQIEQATCRDHFMTPEQAKLEGLIDEIIRGKGD 252


>gi|332111751|gb|EGJ11731.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rubrivivax
           benzoatilyticus JA2]
          Length = 201

 Score =  128 bits (322), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 101/166 (60%), Gaps = 1/166 (0%)

Query: 40  LKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
            K R V V G+I+D +A   C +L+ L +++    I + I+SPGG V +G AI+D ++FI
Sbjct: 30  FKSRFVLVFGEIDDKLARATCERLIAL-SQDSDAPIHMLISSPGGHVESGDAIHDMIRFI 88

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
             P++T   G  AS G+ +  A  K  R  LPN R ++HQP+GG  G+A+DI   A++I+
Sbjct: 89  NAPVTTIGSGWVASAGTHIYLAAPKERRVCLPNTRFMIHQPAGGAGGRATDIAIQAKEII 148

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           K + R+  +     G+  E+V   ++RD+ MSA EA  +G+V +V+
Sbjct: 149 KTRERIARVVATQTGQKIEKVMADMERDYWMSADEAIAYGIVSRVI 194


>gi|313619414|gb|EFR91128.1| Clp protease [Listeria innocua FSL S4-378]
          Length = 190

 Score =  128 bits (321), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 65/173 (37%), Positives = 112/173 (64%), Gaps = 5/173 (2%)

Query: 38  RLLKERIVFVTGQIEDHMATLICAQLLFLEA--ENPQKEISLYINSPGGVVTAGMAIYDT 95
           +L+  R V + G+I   +A  +  QLL LE+   +P   I+++INS GG V AG  I+D 
Sbjct: 17  KLIDTRTVLIYGEINQELAEDVSKQLLLLESISNDP---ITIFINSQGGHVEAGDTIHDM 73

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           ++FIKP +     G  AS G  +  A EK  R++LPN R ++HQP+GG  GQ+++IE  A
Sbjct: 74  IKFIKPTVKIVGTGWVASAGITIYLAAEKENRYSLPNTRYMIHQPAGGVQGQSTEIEIEA 133

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           ++I++++ R+N +  +  G++YE++ K  DR+  +S +EA D+G+V++++ +R
Sbjct: 134 KEIIRMRERINRLIAEATGQSYEKISKDTDRNFWLSVNEAKDYGIVNEIIQNR 186


>gi|313609325|gb|EFR84959.1| Clp protease [Listeria monocytogenes FSL F2-208]
          Length = 190

 Score =  128 bits (321), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 66/173 (38%), Positives = 110/173 (63%), Gaps = 5/173 (2%)

Query: 38  RLLKERIVFVTGQIEDHMATLICAQLLFLEA--ENPQKEISLYINSPGGVVTAGMAIYDT 95
           +L+  R V + G+I   +A  +  QLL LE+   +P   I+++INS GG V AG  I+D 
Sbjct: 17  KLIDTRTVLIYGEINQELAEDVSKQLLLLESISNDP---ITIFINSQGGHVEAGDTIHDM 73

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           ++FIKP +     G  AS G  +  A EK  RF+LPN R ++HQP+GG  GQ+++IE  A
Sbjct: 74  IKFIKPTVKVVGTGWVASAGITIYLAAEKENRFSLPNTRYMIHQPAGGVQGQSTEIEIEA 133

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           ++I++++ R+N +  +  G++YE++ K  DR+  +S  EA D+G+V +++ +R
Sbjct: 134 KEIIRMRERINRLIAEATGQSYEQISKDTDRNFWLSVKEAKDYGIVSEIIENR 186


>gi|16800172|ref|NP_470440.1| ATP-dependent Clp protease proteolytic subunit [Listeria innocua
           Clip11262]
 gi|16413562|emb|CAC96334.1| lin1103 [Listeria innocua Clip11262]
          Length = 190

 Score =  128 bits (321), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 65/173 (37%), Positives = 112/173 (64%), Gaps = 5/173 (2%)

Query: 38  RLLKERIVFVTGQIEDHMATLICAQLLFLEA--ENPQKEISLYINSPGGVVTAGMAIYDT 95
           +L+  R V + G+I   +A  +  QLL LE+   +P   I+++INS GG V AG  I+D 
Sbjct: 17  KLIDTRTVLIYGEINQELAEDVSKQLLLLESISNDP---ITIFINSQGGHVEAGDTIHDM 73

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           ++FIKP +     G  AS G  +  A EK  R++LPN R ++HQP+GG  GQ+++IE  A
Sbjct: 74  IKFIKPTVKIVGTGWVASAGITIYLAAEKENRYSLPNTRYMIHQPAGGVQGQSTEIEIEA 133

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           ++I++++ R+N +  +  G++YE++ K  DR+  +S +EA D+G+V++++ +R
Sbjct: 134 KEIIRMRERINRLIAEATGQSYEKISKDTDRNFWLSVNEAKDYGIVNEIIQNR 186


>gi|47088548|gb|AAT10593.1| putative ATP-dependent Clp protease subunit [Oryza sativa Japonica
           Group]
          Length = 209

 Score =  128 bits (321), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 64/172 (37%), Positives = 102/172 (59%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+ + +ER +F+  +I   +   I   +++L  E+   +I L+INSPGG + +GMAI+
Sbjct: 15  DLYNVMYRERTLFLGQEIRCEVTNHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAIF 74

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           DTMQ + P I   C+G AASM S +L  GE   R A P+ARI+LHQP S  +  +  +  
Sbjct: 75  DTMQTVTPDIYAICLGIAASMASFILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFL 134

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
              +++ K++  +  +Y    GK +  V + ++RD  MSA EA  +G+VD V
Sbjct: 135 LEVEELHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEAKAYGLVDIV 186


>gi|115531963|ref|YP_784118.1| clp protease proteolytic subunit [Pelargonium x hortorum]
 gi|115531983|ref|YP_784138.1| clp protease proteolytic subunit [Pelargonium x hortorum]
 gi|122164258|sp|Q06FP3|CLPP_PELHO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|112382117|gb|ABI17310.1| clp protease proteolytic subunit [Pelargonium x hortorum]
 gi|112382137|gb|ABI17330.1| clp protease proteolytic subunit [Pelargonium x hortorum]
          Length = 219

 Score =  128 bits (321), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 64/183 (34%), Positives = 107/183 (58%), Gaps = 1/183 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL ++R +F+   +E+ +A  I   ++ L  E+P    +LYIN  GG++  G+A+Y
Sbjct: 37  DLYNRLYRQRWLFLGKDLEEEVANNIVGLMIHLNIEDPFWTQTLYINCLGGLIIPGLALY 96

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG-FSGQASDIE 152
           DT+ F++P + T C+G AASM S++L  G    R A PNAR+++HQP    F  + SD+ 
Sbjct: 97  DTIGFVEPDVKTICLGIAASMASVVLVGGTVTERCAFPNARVMIHQPRAKEFDDRFSDLN 156

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
                 ++++  + +IY+    K    +   L+RD  MSA+EA  +G++D V     + E
Sbjct: 157 LEGHLFLQLRNCVTQIYIHRTNKPAWVIIADLERDTFMSATEARTYGIIDGVYAFEEEYE 216

Query: 213 EKS 215
           E S
Sbjct: 217 EWS 219


>gi|283050505|gb|ADB07660.1| ATP-dependent Clp protease proteolytic subunit [Zizania latifolia]
          Length = 191

 Score =  128 bits (321), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 65/173 (37%), Positives = 102/173 (58%), Gaps = 1/173 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           + +ER +F+  +I   +A  I   +++L  E+   +I L+INSPGG + +GMA++DTMQ 
Sbjct: 2   MYRERTLFLGQEIRSEIANHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAVFDTMQT 61

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIERHAQD 157
           + P I T C+G AASM S +L  GE   R A P+ARI++HQP S  +  +  +     ++
Sbjct: 62  VTPDIYTICLGMAASMASFILLGGEPTKRIAFPHARIMIHQPASAYYRARTPEFLLEVEE 121

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           + KI+  +  +Y    GK +  V + ++RD  MSA EA  +G+VD V    ID
Sbjct: 122 LHKIREMVTRVYALRTGKPFWVVSEDMERDVFMSADEAKAYGLVDIVGDEMID 174


>gi|302804775|ref|XP_002984139.1| hypothetical protein SELMODRAFT_271686 [Selaginella moellendorffii]
 gi|300147988|gb|EFJ14649.1| hypothetical protein SELMODRAFT_271686 [Selaginella moellendorffii]
          Length = 274

 Score =  127 bits (320), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 104/172 (60%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           DI++ L +ERI+F+   I++     + A +L+L++ +  K++  Y++ PGG +T  MAIY
Sbjct: 83  DIWNVLYRERIIFIGQHIDEEFGNQVLATMLYLDSVDSSKDLHFYMSCPGGDLTPSMAIY 142

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           DTM  +K  + T  +G A ++   LL+AGEKGMR ++P  RI +  P G   G+A+DI+ 
Sbjct: 143 DTMGSVKSRMGTMALGYAYNIAGFLLAAGEKGMRTSMPLTRIAIQPPQGAARGKAADIQN 202

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            A+++ +++  L +      G   E++ K   R    SA EA D+G++DK++
Sbjct: 203 EAKELSRVRDYLFKQLAVKTGHPEEKIHKDFSRIKRFSAQEALDYGLIDKII 254


>gi|82752460|ref|XP_727310.1| ATP-dependent Clp protease proteolytic subunit [Plasmodium yoelii
           yoelii str. 17XNL]
 gi|23483092|gb|EAA18875.1| ATP-dependent Clp protease, proteolytic subunit ClpP, putative
           [Plasmodium yoelii yoelii]
          Length = 337

 Score =  127 bits (320), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 63/171 (36%), Positives = 104/171 (60%), Gaps = 1/171 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
             K+RI+++T +I    +  +  QLL+L+  N   +I +YINSPGG +  G+AI D   +
Sbjct: 157 FFKKRIIYLTDEINKKTSDELIKQLLYLDNIN-HNDIKIYINSPGGSINEGLAILDIFNY 215

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           IK  I T   G  ASM S++L++G+KG R + PN RI++HQP G   G   DIE   ++I
Sbjct: 216 IKSDIQTISFGLVASMASVILASGKKGKRKSFPNCRIMIHQPLGNAFGHPHDIEIQTKEI 275

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           + +K+ L     K   +  + +EK  DRD+ M++ EA  +G++D+V+ +++
Sbjct: 276 LYLKKLLYYYLSKFTNQNEQTIEKNSDRDYYMNSFEAKKYGIIDQVIETKL 326


>gi|11467326|ref|NP_043183.1| ATP-dependent Clp protease proteolytic subunit [Cyanophora
           paradoxa]
 gi|1352091|sp|P48254|CLPPL_CYAPA RecName: Full=Putative ATP-dependent Clp protease proteolytic
           subunit-like; AltName: Full=Endopeptidase Clp-like
 gi|1016127|gb|AAA81214.1| subunit of ClpP protease [Cyanophora paradoxa]
          Length = 199

 Score =  127 bits (319), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 68/175 (38%), Positives = 103/175 (58%), Gaps = 2/175 (1%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I + LL ER++F+    +    ++    LL+LE+EN QK +S YINS          +YD
Sbjct: 22  INNALLNERVIFLCNYEDATDESIYIGMLLYLESENSQKPVSFYINSSITFPNLCFGLYD 81

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP--SGGFSGQASDIE 152
           T+  IK  I T C+G A  M SL+L+AG KG RFALPN+RI++ +P   GG +GQA+D+ 
Sbjct: 82  TILQIKADIVTICLGLAGGMSSLILAAGTKGQRFALPNSRIMMQEPLIDGGVNGQATDLA 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
             A++++  K  L  +Y +  G+    +EK L R    SA  A ++G +D +LM+
Sbjct: 142 IEAKELMDTKEILINLYHERTGQPKPVIEKDLQRPRYFSAQAAKEYGFIDSLLMA 196


>gi|282896315|ref|ZP_06304337.1| hypothetical protein CRD_01199 [Raphidiopsis brookii D9]
 gi|281198811|gb|EFA73690.1| hypothetical protein CRD_01199 [Raphidiopsis brookii D9]
          Length = 187

 Score =  127 bits (319), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 69/179 (38%), Positives = 107/179 (59%), Gaps = 14/179 (7%)

Query: 41  KERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGM---------- 90
           +ERI+F+   +  ++A  + + LL+L++E+  K I LYINS G  V AGM          
Sbjct: 3   QERILFLNQPLTTNLANSLISSLLYLDSEDSSKPIYLYINSFGDPVMAGMISEMAGMEST 62

Query: 91  ----AIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG 146
               AIYDT+Q +K  I T C+GQA SM +LLLS G KG R +LP+  I L Q      G
Sbjct: 63  NACLAIYDTIQHVKSEIVTICLGQAVSMAALLLSCGAKGKRVSLPHCSIALAQFRSATQG 122

Query: 147 QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           QA+DI+ +AQ++++ K  + +I+  N G++ E++    +R   M+  EA ++G++D VL
Sbjct: 123 QATDIQLNAQEVLRKKSLILDIFSHNTGQSREKIAHDSERIFYMTPPEAREYGLIDHVL 181


>gi|297608276|ref|NP_001061378.2| Os08g0252200 [Oryza sativa Japonica Group]
 gi|40253575|dbj|BAD05521.1| putative ATP-dependent Clp protease proteolytic subunit [Oryza
           sativa Japonica Group]
 gi|255678293|dbj|BAF23292.2| Os08g0252200 [Oryza sativa Japonica Group]
          Length = 216

 Score =  127 bits (319), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 65/172 (37%), Positives = 102/172 (59%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+ + +ER +F+  +I   +   I   +++L  E+   +I L+INSPGG + +GMAI 
Sbjct: 22  DLYNVMYRERTLFLGQEIRCEVTNHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAIC 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           DTMQ + P I T C+G AASM S +L  GE   R A P+ARI+LHQP S  +  +  +  
Sbjct: 82  DTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFL 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
              +++ K++  +  +Y    GK +  V + ++RD  MSA EA  +G+VD V
Sbjct: 142 LEVEELHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEAKAYGLVDIV 193


>gi|255023203|ref|ZP_05295189.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes FSL J1-208]
          Length = 190

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 65/173 (37%), Positives = 111/173 (64%), Gaps = 5/173 (2%)

Query: 38  RLLKERIVFVTGQIEDHMATLICAQLLFLEA--ENPQKEISLYINSPGGVVTAGMAIYDT 95
           +L+  R V + G+I   +A  +  QLL LE+   +P   I+++INS GG V AG  I+D 
Sbjct: 17  KLIDTRTVLIYGEINQELAEDVSKQLLLLESISNDP---ITIFINSQGGHVEAGDTIHDM 73

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           ++FIKP +     G  AS G  +  A +K  RF+LPN R ++HQP+GG  GQ+++IE  A
Sbjct: 74  IKFIKPTVKVVGTGWVASAGITIYLAAKKENRFSLPNTRYMIHQPAGGVQGQSTEIEIEA 133

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           ++I++++ R+N +  +  G++YE++ K  DR+  +S  EA D+G+V++++ +R
Sbjct: 134 KEIIRMRERINRLIAEATGQSYEQISKDTDRNFWLSVKEAKDYGIVNEIIENR 186


>gi|330816937|ref|YP_004360642.1| ATP-dependent Clp protease proteolytic component [Burkholderia
           gladioli BSR3]
 gi|327369330|gb|AEA60686.1| ATP-dependent Clp protease proteolytic component [Burkholderia
           gladioli BSR3]
          Length = 201

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 67/190 (35%), Positives = 106/190 (55%), Gaps = 1/190 (0%)

Query: 25  QTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG 84
           Q   G+    +  +  + R V V G I D +A+    +LL L+AE+    I + ++SPGG
Sbjct: 13  QPAPGQPGAFLEEKAFRARAVLVFGTITDALASETVRRLLALDAES-AAPIDMIVSSPGG 71

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
            + +G AI+D ++FI  P++    G   S  + L     +  RF LP  R L+HQPSGG 
Sbjct: 72  HLESGDAIHDVVRFIDAPVNMIGTGWVGSAATHLYLGAARARRFCLPQTRFLIHQPSGGA 131

Query: 145 SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           SGQASDI   AQ+IVK + R+  +  + CG+    V + ++RD  M A EA  +G+V +V
Sbjct: 132 SGQASDIAIQAQEIVKARERIAAVIARECGQPLARVLEDIERDRWMPAQEALRYGLVARV 191

Query: 205 LMSRIDIEEK 214
           +  R ++ ++
Sbjct: 192 VERRAELADR 201


>gi|9968665|emb|CAC06126.1| putative ATP-dependent clp serine protease proteolytic subunit
           [Pisum sativum]
          Length = 246

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/153 (38%), Positives = 93/153 (60%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+ S L + RI+F+   I   MA  + +QL+ L   +P  +I +YIN  GG   + +A+Y
Sbjct: 93  DLSSVLFRNRIIFIGQPINAQMAQRVISQLVTLATIDPDADILMYINCAGGSTYSVLAVY 152

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M +IKP + T C G AAS  +LLL+ GEKGMR+++PNARI++ QP  GF G   D++R
Sbjct: 153 DCMSWIKPKVGTVCFGVAASQATLLLAGGEKGMRYSMPNARIMMGQPRCGFGGHVEDVKR 212

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
              + V+ + +++ ++    G   E V++  DR
Sbjct: 213 LVNEAVQSRHKMDNMFSAFTGLPIETVQEYTDR 245


>gi|319791980|ref|YP_004153620.1| endopeptidase clp [Variovorax paradoxus EPS]
 gi|315594443|gb|ADU35509.1| Endopeptidase Clp [Variovorax paradoxus EPS]
          Length = 197

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 61/182 (33%), Positives = 107/182 (58%)

Query: 31  RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGM 90
           R+  +  +  K R + + G I D +A  +  +L+ L+A+N +K I + ++SPGG + +G 
Sbjct: 16  RNSYLEEKAFKSRTLLIFGSITDSVAADVTRRLIALDADNAEKPIDILVSSPGGHLESGD 75

Query: 91  AIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASD 150
           AI+D ++FI  P++    G   S  + L  A  +  R  LPN R L+HQPSGG  GQA+D
Sbjct: 76  AIHDIVRFISAPVNMIGTGWVGSAATHLFLAAPRERRVCLPNTRFLIHQPSGGAGGQATD 135

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           I   AQ+I+K ++R+     +  GK  + V   ++RD  +SA EA ++G+V +++  + +
Sbjct: 136 IAIQAQEIIKARQRIAHEIARETGKHIDVVLADIERDRWLSAEEAVEYGLVSRIIQRKTE 195

Query: 211 IE 212
           ++
Sbjct: 196 LK 197


>gi|282900571|ref|ZP_06308513.1| hypothetical protein CRC_01932 [Cylindrospermopsis raciborskii
           CS-505]
 gi|281194371|gb|EFA69326.1| hypothetical protein CRC_01932 [Cylindrospermopsis raciborskii
           CS-505]
          Length = 187

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/179 (37%), Positives = 108/179 (60%), Gaps = 14/179 (7%)

Query: 41  KERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGM---------- 90
           +ERI+F+   +   +A  + + LL+L++E+  K + LYINS G  V AGM          
Sbjct: 3   QERILFLNQPLTTDLANSLISSLLYLDSEDSSKPVYLYINSFGDPVMAGMISEMAGMEST 62

Query: 91  ----AIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG 146
               AIYDT+Q +K  I T C+GQA SM +LLLS+G KG R +LP+  I L Q      G
Sbjct: 63  NACLAIYDTIQHVKSEIVTICLGQAVSMAALLLSSGAKGKRVSLPHCSIALAQFRSATRG 122

Query: 147 QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           QA+DI+ +AQ++++ K  + +I+  N G++ E++ +  +R   M+  EA ++G++D VL
Sbjct: 123 QATDIQVNAQEVLRKKSLILDIFSHNTGQSREKIAQDSERIFYMTPPEAREYGLIDHVL 181


>gi|11467216|ref|NP_043048.1| ATP-dependent Clp protease proteolytic subunit [Zea mays]
 gi|1168978|sp|P26567|CLPP_MAIZE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|902246|emb|CAA60310.1| clpP [Zea mays]
          Length = 216

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 66/178 (37%), Positives = 104/178 (58%), Gaps = 1/178 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+ + +ER +F+  +I   +   I   +++L  E+   +I L+INS GG + +GMAI+
Sbjct: 22  DLYNVMYRERTLFLGQEIRCEITNHITGLMVYLSIEDGNSDIFLFINSLGGWLISGMAIF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           DTMQ + P I T C+G AASM S +L  GE   R A P+ARI+LHQP S  +  +  +  
Sbjct: 82  DTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFL 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
              +++ K++  +  +Y    GK +  V + ++RD  MSA EA  +G+VD V    ID
Sbjct: 142 LEVEELHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEAKAYGLVDIVGDEMID 199


>gi|302780906|ref|XP_002972227.1| hypothetical protein SELMODRAFT_148310 [Selaginella moellendorffii]
 gi|300159694|gb|EFJ26313.1| hypothetical protein SELMODRAFT_148310 [Selaginella moellendorffii]
          Length = 271

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 105/172 (61%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           DI++ L +ERI+F+   I++     + A +L+L++ +  K++  Y++ PGG +T  MAIY
Sbjct: 80  DIWNVLYRERIIFIGQHIDEEFGNQVLATMLYLDSVDSSKDLHFYMSCPGGDLTPSMAIY 139

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           DTM  +K  + T  +G A ++   LL+AGEKG+R ++P  RI +  P G   G+A+DI+ 
Sbjct: 140 DTMGSVKSRMGTMALGYAYNIAGFLLAAGEKGLRTSMPLTRIAMQPPQGAARGKAADIQN 199

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            A+++ +++  L +      G+  E++ K   R    SA EA D+G++DK++
Sbjct: 200 EAKELSRVRDYLFKQLAVKTGQPEEKIHKDFSRIKRFSAQEALDYGLIDKII 251


>gi|260766931|gb|ACX50407.1| ATP-dependent Clp protease [Eriobotrya japonica]
          Length = 305

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/189 (39%), Positives = 114/189 (60%), Gaps = 8/189 (4%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG--------GV 85
           D+ S L K RIV++   +   +  LI A+ L+L+ E+  K I LYINS G        G 
Sbjct: 104 DLASYLYKNRIVYLGMSLVPSVTELILAEFLYLQYEDDTKPIYLYINSTGTTKGGEKLGY 163

Query: 86  VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS 145
            T   AIYD M+++KPPI T C+G A    +LLL+AG KG R ALP++ I++ QP   F 
Sbjct: 164 ETEAFAIYDVMRYVKPPIFTLCVGNAWGEAALLLAAGAKGNRSALPSSTIMMKQPIARFQ 223

Query: 146 GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           GQA+DIE   +++  +K  L +++ K+ GK+ E++E  + R    S SEA ++G++DKVL
Sbjct: 224 GQATDIELARREVRNVKDELVKLFAKHVGKSTEQIEADIRRPKYFSPSEAVEYGIIDKVL 283

Query: 206 MSRIDIEEK 214
            +    E++
Sbjct: 284 YNERSTEDR 292


>gi|313624155|gb|EFR94223.1| Clp protease [Listeria innocua FSL J1-023]
          Length = 190

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 112/171 (65%), Gaps = 1/171 (0%)

Query: 38  RLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97
           +L+  R V + G+I   +A  +  QLL LE+ + +  I++++NS GG V AG  I+D ++
Sbjct: 17  KLIDTRTVLIYGEINQELAEDVSKQLLLLESISDEP-ITIFVNSQGGHVEAGDTIHDMIK 75

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
           FIKP +     G  AS G  +  A +K  R++LPN R ++HQP+GG  GQ+++IE  A++
Sbjct: 76  FIKPTVKVVGTGWVASAGITIYLAADKENRYSLPNTRYMIHQPAGGVQGQSTEIEIEAKE 135

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           I++++ R+N +  +  G++YE++ K  DR+  +S +EA D+G+V++++ +R
Sbjct: 136 IIRMRERINRLIAEATGQSYEKISKDTDRNFWLSVNEAKDYGIVNEIIQNR 186


>gi|226223740|ref|YP_002757847.1| ATP-dependent Clp protease proteolytic component [Listeria
           monocytogenes Clip81459]
 gi|225876202|emb|CAS04911.1| Putative ATP-dependent Clp protease proteolytic component [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
          Length = 190

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 112/171 (65%), Gaps = 1/171 (0%)

Query: 38  RLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97
           +L+  R V + G+I   +A  +  QLL LE+ + +  I++++NS GG V AG  I+D ++
Sbjct: 17  KLIDTRTVLIYGEINQELAEDVSKQLLLLESISDEP-ITIFVNSQGGHVEAGDTIHDMIK 75

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
           FIKP +     G  AS G  +  A +K  R++LPN R ++HQP+GG  GQ+++IE  A++
Sbjct: 76  FIKPTVKVVGTGWVASAGITIYLAADKENRYSLPNTRYMIHQPAGGVQGQSTEIEIEAKE 135

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           I++++ R+N +  +  G++YE++ K  DR+  +S +EA D+G+V++++ +R
Sbjct: 136 IIRMRERINRLIAEATGQSYEKISKDTDRNFWLSVNEAKDYGIVNEIIQNR 186


>gi|283050417|gb|ADB07594.1| ATP-dependent Clp protease proteolytic subunit [Oryza punctata]
 gi|283050421|gb|ADB07597.1| ATP-dependent Clp protease proteolytic subunit [Oryza
           malampuzhaensis]
          Length = 191

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 63/167 (37%), Positives = 99/167 (59%), Gaps = 1/167 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           + +ER +F+  +I   +   I   +++L  E+   +I L+INSPGG + +GMAI+DTMQ 
Sbjct: 2   MYRERTLFLGQEIRSEVTNHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAIFDTMQT 61

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIERHAQD 157
           + P I T C+G AASM S +L  GE   R A P+ARI+LHQP S  +  +  +     ++
Sbjct: 62  VTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFLLEVEE 121

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           + K++  +  +Y    GK +  V + ++RD  MSA EA  +G+VD V
Sbjct: 122 LHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEAKAYGLVDIV 168


>gi|298491710|ref|YP_003721887.1| endopeptidase Clp ['Nostoc azollae' 0708]
 gi|298233628|gb|ADI64764.1| Endopeptidase Clp ['Nostoc azollae' 0708]
          Length = 220

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/201 (34%), Positives = 119/201 (59%), Gaps = 15/201 (7%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP  +  +N+ +    I  R+ +ERI+F+   +   +A  + + +L+L++E+  K I LY
Sbjct: 9   VPYNIPGSNQWQW-ISIGQRMTQERILFLNQPLTTSLANSLISSILYLDSEDQSKPIYLY 67

Query: 79  INSPGGVVTAG--------------MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           INS G  V AG              +AIYDTMQ+IK  + T C GQA  M +L+LS+G K
Sbjct: 68  INSLGDPVLAGRIDETAGMMSIKSCLAIYDTMQYIKSEVVTICFGQAVGMAALILSSGAK 127

Query: 125 GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
           G R +LP+A I L Q      GQA+DI+ +A+++++ +  + +I+ +N G+  +++ K  
Sbjct: 128 GKRVSLPHASIALTQFQVAAQGQATDIQVNAEEVLRKRAIILDIFSQNTGQPADKITKDS 187

Query: 185 DRDHIMSASEACDWGVVDKVL 205
           +R   M+  EA ++G++D+VL
Sbjct: 188 ERIFYMTPLEAKEYGLIDRVL 208


>gi|283050465|gb|ADB07630.1| ATP-dependent Clp protease proteolytic subunit [Leersia oryzoides]
 gi|283050469|gb|ADB07633.1| ATP-dependent Clp protease proteolytic subunit [Leersia perrieri]
 gi|283050473|gb|ADB07636.1| ATP-dependent Clp protease proteolytic subunit [Leersia hexandra]
 gi|283050481|gb|ADB07642.1| ATP-dependent Clp protease proteolytic subunit [Maltebrunia
           letestui]
 gi|283050485|gb|ADB07645.1| ATP-dependent Clp protease proteolytic subunit [Prosphytochloa
           prehensilis]
          Length = 191

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 65/173 (37%), Positives = 101/173 (58%), Gaps = 1/173 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           + +ER +F+  +I   +   I   +++L  E+   +I L+INSPGG + +GMAI+DTMQ 
Sbjct: 2   MYRERTLFLGQEIRSEVTNHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAIFDTMQT 61

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIERHAQD 157
           + P I T C+G AASM S +L  GE   R A P+ARI+LHQP S  +  +  +     ++
Sbjct: 62  VTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFLLEVEE 121

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           + K++  +  +Y    GK +  V + ++RD  MSA EA  +G+VD V    ID
Sbjct: 122 LHKVREMVTRVYALRTGKPFWVVSEDMERDVFMSADEAKAYGLVDIVGDEMID 174


>gi|147800090|emb|CAN70935.1| hypothetical protein VITISV_032484 [Vitis vinifera]
          Length = 229

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/161 (37%), Positives = 98/161 (60%), Gaps = 9/161 (5%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+ + L + RI+F+   I   +A  + +QL+ L A +   +I +Y+N PGG   + +AIY
Sbjct: 54  DLSTVLFRSRIIFIGQPINSMVAQRVISQLVTLAAIDEDADILMYLNCPGGSTYSVLAIY 113

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M +IKP + T C G AAS G+LLL+ GEKGMR+A+PNARI+         G   D+ R
Sbjct: 114 DCMAWIKPKVGTVCFGVAASQGALLLAGGEKGMRYAMPNARIM---------GHVEDVRR 164

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
              + V+ + +++++Y    G+  E+V++  +RD  +SASE
Sbjct: 165 QVNEAVQSRHKIDKMYAAFTGQPLEQVQQYTERDRFLSASE 205


>gi|12336|emb|CAA38354.1| proteolytic subunit of ATP-dependent protease [Triticum aestivum]
          Length = 216

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/195 (36%), Positives = 111/195 (56%), Gaps = 3/195 (1%)

Query: 19  VPMVVEQTNRGERS--YDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +  R E +   D+Y+ + +ER +F+  +I   +   I   +++L  E+   +I 
Sbjct: 5   VPKVPYRIPRDEEATWVDLYNVMYRERTLFLGQEIRCEITNHITGLMVYLSIEDGISDIF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG + +GMAI+DTMQ + P I T C+G AASM S +L  GE   R A P+ARI+
Sbjct: 65  LFINSPGGWLISGMAIFDTMQTVTPDIYTRCLGIAASMASFILLGGEPTKRIAFPHARIM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           LHQP S  +  +  +     +++ K++  +  +Y    GK +  V + ++RD  MSA EA
Sbjct: 125 LHQPASAYYRARTPESLLEVEELHKVREMITRVYAVRTGKPFWVVSEDMERDVFMSADEA 184

Query: 196 CDWGVVDKVLMSRID 210
             + +VD V    ID
Sbjct: 185 KAYELVDIVGDEMID 199


>gi|67525029|ref|XP_660576.1| hypothetical protein AN2972.2 [Aspergillus nidulans FGSC A4]
 gi|40744367|gb|EAA63543.1| hypothetical protein AN2972.2 [Aspergillus nidulans FGSC A4]
 gi|259486082|tpe|CBF83641.1| TPA: ATP-dependent Clp protease, proteolytic subunit ClpP
           (AFU_orthologue; AFUA_3G08330) [Aspergillus nidulans
           FGSC A4]
          Length = 135

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/118 (48%), Positives = 89/118 (75%), Gaps = 4/118 (3%)

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           M +I  P+ST C+GQAASMGSLLL  G+ G R+ LP++ I++HQPSGG+ GQA+DI  HA
Sbjct: 1   MTYIASPVSTICVGQAASMGSLLLCGGQAGQRYCLPHSSIMIHQPSGGYFGQATDIAIHA 60

Query: 156 QDIVKIKRRLNEIYVKN-CGK---TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           ++I++++ +LN+IY ++  GK   + +E+EK ++RD+ M A EA + G+VD++L  R+
Sbjct: 61  KEILRVRHQLNQIYKRHLTGKKELSLDEIEKLMERDYFMGAREALELGIVDEILDRRV 118


>gi|68069489|ref|XP_676656.1| ATP-dependent CLP protease [Plasmodium berghei strain ANKA]
 gi|56496453|emb|CAI00684.1| ATP-dependent CLP protease, putative [Plasmodium berghei]
          Length = 329

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/171 (38%), Positives = 104/171 (60%), Gaps = 2/171 (1%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
             K+RI+++T +I    +  +  QLL+L+  N   +I +YINSPGG +  G+AI D   +
Sbjct: 150 FFKKRIIYLTDEINKKTSDELIKQLLYLDNIN-HNDIKIYINSPGGSINEGLAILDIFNY 208

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           IK  I T   G  ASM S++L++G+KG R + PN RI++HQP G   G   DIE   ++I
Sbjct: 209 IKSDIQTISFGLVASMASVILASGKKGKRKSFPNCRIMIHQPLGNAYGHPHDIEIQTKEI 268

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           + +K+ L     K   K  E +EK  DRD+  +A EA ++G+VD+V+ +++
Sbjct: 269 LYLKKLLYYYLSKFTNKNEETIEKHSDRDY-YNAYEAKEYGIVDEVVETKL 318


>gi|302340171|ref|YP_003805377.1| endopeptidase Clp [Spirochaeta smaragdinae DSM 11293]
 gi|301637356|gb|ADK82783.1| Endopeptidase Clp [Spirochaeta smaragdinae DSM 11293]
          Length = 203

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/174 (36%), Positives = 111/174 (63%), Gaps = 1/174 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +  ++++ R + ++G+I   +A  +  QL+ LEA++    I ++I+SPGG   AG AI+D
Sbjct: 26  LMEKMMETRTIILSGEINKELAERVVRQLILLEAQS-DDPIKVFIDSPGGDADAGFAIFD 84

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            M+FIKP + T  MG  AS  +++L A     R  LPN+  L+HQP  G  G A++IE H
Sbjct: 85  MMRFIKPDVYTIGMGLVASAAAIILLAAPVEHRIGLPNSHYLIHQPLSGIRGVATEIEIH 144

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           A+++ K++ R+N++  +  G+  ++VEK  DRD+ ++ +EA D+G++ +V  +R
Sbjct: 145 ARELQKLRIRINQLISEETGRDLDKVEKETDRDYWLNGTEAVDYGLISRVAKTR 198


>gi|298707068|emb|CBJ29870.1| ATP-dependent Clp protease proteolytic subunit [Ectocarpus
           siliculosus]
          Length = 256

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/172 (35%), Positives = 103/172 (59%), Gaps = 2/172 (1%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           L + RI+ V   I++  A  + A LL+ E  +P K+ISLY N PG ++   +A+YDT+  
Sbjct: 27  LQQSRIIMVGKFIDEEYANQLIAMLLYHEKNDPNKKISLYFNCPGALIRPALAVYDTLMH 86

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS--GGFSGQASDIERHAQ 156
           + P +ST  +G A  M S L +AG++G R+ALPN+R L+ +      + GQASDI    Q
Sbjct: 87  MGPELSTLNLGLATGMVSFLCAAGKRGQRYALPNSRFLMQRTGMEDPYQGQASDIGVEVQ 146

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           ++++   ++ E   +  G T  ++ +   RD  +S++EA  +G++D+VL+ R
Sbjct: 147 NVMRGNSKMEEALQRITGHTVAKIHEDFQRDFYLSSAEAVQYGIIDEVLLPR 198


>gi|283050477|gb|ADB07639.1| ATP-dependent Clp protease proteolytic subunit [Leersia
           tisserantii]
          Length = 191

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/167 (37%), Positives = 98/167 (58%), Gaps = 1/167 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           + +ER +F+  +I   +   I   +++L  E+   +I L+INSPGG + +GMAI+DTMQ 
Sbjct: 2   MYRERTLFLGQEIRSEVTNHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAIFDTMQT 61

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIERHAQD 157
           + P I T C+G AASM S +L  GE   R A P ARI+LHQP S  +  +  +     ++
Sbjct: 62  VTPDIYTICLGIAASMASFILLGGEPTKRIAFPRARIMLHQPASAYYRARTPEFLLEVEE 121

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           + K++  +  +Y    GK +  V + ++RD  MSA EA  +G+VD V
Sbjct: 122 LHKVREMVTRVYALRTGKPFWVVSEDMERDVFMSADEAKAYGLVDIV 168


>gi|166201977|gb|ABY84444.1| ATP-dependent protease proteolytic subunit [Lychnis abyssinica]
          Length = 372

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 107/172 (62%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y  L +ER +F+  +I+  +A  + A +L+L  ++P K++ L+INSPGG + +G+ ++
Sbjct: 196 DLYECLYEERYLFLGDEIKIELANKVSALMLYLSIQDPNKDMRLFINSPGGGLISGIVLF 255

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI-E 152
           D MQF++  + T C G AAS  SL+L  GE   R A  NAR+++HQP+  F    S +  
Sbjct: 256 DMMQFVRADVCTICYGLAASTASLVLLGGELTKRSAFANARVMIHQPASAFFKDKSRLFA 315

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             +++++K++ ++ +IY++   K    + + ++RD  MS  EA D G+VD +
Sbjct: 316 IDSRELLKLREQVTQIYIQRTKKPEWLIWEDMERDTFMSPEEALDHGIVDYI 367


>gi|218176265|ref|YP_002364522.1| clp protease proteolytic subunit [Festuca arundinacea]
 gi|215882349|gb|ACJ70779.1| clp protease proteolytic subunit [Festuca arundinacea]
          Length = 214

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 68/178 (38%), Positives = 103/178 (57%), Gaps = 3/178 (1%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+ + +ER +F  GQ    +   I   +++L  E+   +I L+INSPGG + +GMAI+
Sbjct: 22  DLYNVMYRERTLF--GQRRCEITNHITVLMVYLSIEDGISDIFLFINSPGGWLISGMAIF 79

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           DTMQ + P I T C+G AASM S +L  GE   R A P+ARI+LHQP S  +     +  
Sbjct: 80  DTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIMLHQPASAYYRAGTPEFL 139

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
              +++ K++  +  +Y    GK +  V + ++RD  MSA EA  +G+VD V    ID
Sbjct: 140 LEVEELHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEAKAYGLVDIVGDEMID 197


>gi|77553345|gb|ABA96141.1| ATP-dependent Clp protease proteolytic subunit, putative, expressed
           [Oryza sativa Japonica Group]
          Length = 216

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 64/172 (37%), Positives = 102/172 (59%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+ + +ER +F+  +I   +   I   +++L  E+   +I L+INSPGG + +GMAI+
Sbjct: 22  DLYNVMYRERTLFLGQEIRCEVTNHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAIF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIE 152
           DTMQ + P I T C+G AASM S +L  GE   R A P+ARI+LHQP S  +  +  +  
Sbjct: 82  DTMQTVTPDIYTICLGIAASMVSFILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFL 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
              +++ K+   +  +Y    GK +  V + ++RD  MSA +A  +G+VD V
Sbjct: 142 LEVEELHKVHEMITRVYALRTGKPFWVVSEDMERDVFMSADKAKAYGLVDIV 193


>gi|283050501|gb|ADB07657.1| ATP-dependent Clp protease proteolytic subunit [Zizania aquatica]
          Length = 191

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 64/173 (36%), Positives = 101/173 (58%), Gaps = 1/173 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           + +ER +F+  +I   +A  I   +++L  E+   +I L+INSPGG + +GM ++DTMQ 
Sbjct: 2   MYRERTLFLGQEIRSEIANHITGLMVYLSIEDGISDIFLFINSPGGWLISGMGVFDTMQT 61

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIERHAQD 157
           + P I T C+G AASM S +L  GE   R A P+ARI++HQP S  +  +  +     ++
Sbjct: 62  VTPDIYTICLGMAASMASFILLGGEPTKRIAFPHARIMIHQPASAYYRTRTPEFLLEVEE 121

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           + KI+  +  +Y    GK +  V + ++RD  MSA EA  +G+VD V    ID
Sbjct: 122 LHKIREMVTRVYALRTGKPFWVVSEDMERDVFMSADEAKAYGLVDIVGDEMID 174


>gi|283050509|gb|ADB07663.1| ATP-dependent Clp protease proteolytic subunit [Rhynchoryza
           subulata]
          Length = 191

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 65/173 (37%), Positives = 101/173 (58%), Gaps = 1/173 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           + +ER +F+  +I   +   I   +++L  E+   +I L+INSPGG + +GMAI+DTMQ 
Sbjct: 2   MYRERTLFLGQEIRCEVTNHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAIFDTMQT 61

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIERHAQD 157
           + P I T C+G AASM S +L  GE   R A P+ARI+LHQP S  +  +  +     ++
Sbjct: 62  VTPDIYTICLGIAASMASFILVGGEPTKRIAFPHARIMLHQPASAYYRARTPEFLLEVEE 121

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           + K++  +  +Y    GK +  V + ++RD  MSA EA  +G+VD V    ID
Sbjct: 122 LHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEAKAYGLVDIVGDEMID 174


>gi|283050449|gb|ADB07618.1| ATP-dependent Clp protease proteolytic subunit [Oryza brachyantha]
 gi|283050457|gb|ADB07624.1| ATP-dependent Clp protease proteolytic subunit [Oryza granulata]
 gi|283050461|gb|ADB07627.1| ATP-dependent Clp protease proteolytic subunit [Oryza
           neocaledonica]
 gi|283050493|gb|ADB07651.1| ATP-dependent Clp protease proteolytic subunit [Chikusichloa
           aquatica]
 gi|283050497|gb|ADB07654.1| ATP-dependent Clp protease proteolytic subunit [Chikusichloa
           mutica]
          Length = 191

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 65/173 (37%), Positives = 101/173 (58%), Gaps = 1/173 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           + +ER +F+  +I   +   I   +++L  E+   +I L+INSPGG + +GMAI+DTMQ 
Sbjct: 2   MYRERTLFLGQEIRCEVTNHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAIFDTMQT 61

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIERHAQD 157
           + P I T C+G AASM S +L  GE   R A P+ARI+LHQP S  +  +  +     ++
Sbjct: 62  VTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFLLEVEE 121

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           + K++  +  +Y    GK +  V + ++RD  MSA EA  +G+VD V    ID
Sbjct: 122 LHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEAKAYGLVDIVGDEMID 174


>gi|167042802|gb|ABZ07520.1| putative Clp protease [uncultured marine microorganism
           HF4000_ANIW137I15]
          Length = 122

 Score =  125 bits (313), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 56/118 (47%), Positives = 90/118 (76%), Gaps = 1/118 (0%)

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           ++P IST C+GQAASMG+LLL+AG +  RF+LPNARI++HQP  G  GQA+DIE HA++I
Sbjct: 1   MRPDISTICIGQAASMGALLLTAGAQAKRFSLPNARIMIHQPLAGVQGQATDIEIHAREI 60

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           ++++  L+ I V++ G+T + +    +RD  M+  EA ++G++D V++SR ++++KSK
Sbjct: 61  LRMRETLDGILVRHSGQTLKRIHTDTERDFFMTGIEAKEYGLIDDVIVSR-ELKQKSK 117


>gi|283050524|gb|ADB07674.1| ATP-dependent Clp protease proteolytic subunit [Hygroryza aristata]
          Length = 191

 Score =  125 bits (313), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 63/167 (37%), Positives = 99/167 (59%), Gaps = 1/167 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           + +ER +F+  +I   +   I   +++L  E+   +I L+INSPGG + +GMAI+DTMQ 
Sbjct: 2   MYRERTLFLGQEIRCEVTNHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAIFDTMQT 61

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIERHAQD 157
           + P I T C+G AASM S +L  GE   R A P+ARI+LHQP S  +  +  +     ++
Sbjct: 62  VTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFLLEVEE 121

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           + K++  +  +Y    GK +  V + ++RD  MSA EA  +G+VD V
Sbjct: 122 LHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEAKAYGLVDIV 168


>gi|283050405|gb|ADB07585.1| ATP-dependent Clp protease proteolytic subunit [Oryza rufipogon]
 gi|283050409|gb|ADB07588.1| ATP-dependent Clp protease proteolytic subunit [Oryza glaberrima]
 gi|283050413|gb|ADB07591.1| ATP-dependent Clp protease proteolytic subunit [Oryza meridionalis]
 gi|283050425|gb|ADB07600.1| ATP-dependent Clp protease proteolytic subunit [Oryza officinalis]
 gi|283050429|gb|ADB07603.1| ATP-dependent Clp protease proteolytic subunit [Oryza punctata]
 gi|283050433|gb|ADB07606.1| ATP-dependent Clp protease proteolytic subunit [Oryza rhizomatis]
 gi|283050437|gb|ADB07609.1| ATP-dependent Clp protease proteolytic subunit [Oryza latifolia]
 gi|283050441|gb|ADB07612.1| ATP-dependent Clp protease proteolytic subunit [Oryza
           australiensis]
 gi|283050445|gb|ADB07615.1| ATP-dependent Clp protease proteolytic subunit [Oryza coarctata]
          Length = 191

 Score =  125 bits (313), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 63/167 (37%), Positives = 99/167 (59%), Gaps = 1/167 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           + +ER +F+  +I   +   I   +++L  E+   +I L+INSPGG + +GMAI+DTMQ 
Sbjct: 2   MYRERTLFLGQEIRCEVTNHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAIFDTMQT 61

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIERHAQD 157
           + P I T C+G AASM S +L  GE   R A P+ARI+LHQP S  +  +  +     ++
Sbjct: 62  VTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFLLEVEE 121

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           + K++  +  +Y    GK +  V + ++RD  MSA EA  +G+VD V
Sbjct: 122 LHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEAKAYGLVDIV 168


>gi|159467461|ref|XP_001691910.1| non-catalytic subunit of chloroplast ClpP complex [Chlamydomonas
           reinhardtii]
 gi|158278637|gb|EDP04400.1| non-catalytic subunit of chloroplast ClpP complex [Chlamydomonas
           reinhardtii]
          Length = 282

 Score =  125 bits (313), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 109/175 (62%), Gaps = 2/175 (1%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D++     +++VF+   I + +A  + A  L+L++ + QK I  ++N PGG V   +A+Y
Sbjct: 85  DLWEAYTYQKVVFIKEAITEDVANNMIALTLYLDSLD-QKRIYYWLNVPGGDVVPTLALY 143

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAG-EKGMRFALPNARILLHQPSGGFSGQASDIE 152
           DTMQ+++   +T C G    MG  LL+AG EKG RFA+P++ +++H PSG   GQAS++ 
Sbjct: 144 DTMQYVRSKTATVCYGLCLGMGGFLLTAGGEKGYRFAMPHSILMMHHPSGASRGQASEMH 203

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
             ++++V+++  L+ +     G+ Y+ V + L R+  M   +A ++G++DKVL +
Sbjct: 204 IESRELVRMRDYLSLLTSNATGQPYDRVIRELSRNKWMDPKQAIEYGMIDKVLTT 258


>gi|283050453|gb|ADB07621.1| ATP-dependent Clp protease proteolytic subunit [Oryza ridleyi]
          Length = 191

 Score =  125 bits (313), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 63/167 (37%), Positives = 99/167 (59%), Gaps = 1/167 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           + +ER +F+  +I   +   I   +++L  E+   +I L+INSPGG + +GMAI+DTMQ 
Sbjct: 2   MYRERTLFLGQEIRCEVTNHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAIFDTMQT 61

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIERHAQD 157
           + P I T C+G AASM S +L  GE   R A P+ARI+LHQP S  +  +  +     ++
Sbjct: 62  VTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFLLEVEE 121

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           + K++  +  +Y    GK +  V + ++RD  MSA EA  +G+VD V
Sbjct: 122 LHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEAKAYGLVDIV 168


>gi|283050513|gb|ADB07666.1| ATP-dependent Clp protease proteolytic subunit [Luziola fluitans]
          Length = 191

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 64/173 (36%), Positives = 101/173 (58%), Gaps = 1/173 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           + +ER +F+  +I   +   I   +++L  E+   +I L+INSPGG + +GMAI+DTMQ 
Sbjct: 2   MYRERTLFLGQEIRCEITNHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAIFDTMQT 61

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIERHAQD 157
           + P I T C+G AASM S +L  GE   R A P+AR++LHQP S  +  +  +     ++
Sbjct: 62  VTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARVMLHQPASAYYRARTPEFLLEVEE 121

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           + K++  +  +Y    GK +  V + ++RD  MSA EA  +G+VD V    ID
Sbjct: 122 LHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEAKAYGLVDIVGDEMID 174


>gi|308311726|gb|ADO27637.1| clpP [Rhizanthella gardneri]
          Length = 157

 Score =  124 bits (312), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 53/143 (37%), Positives = 95/143 (66%), Gaps = 1/143 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +ER++F+  +++  ++  +   +++L  E+  +++ L+INSPGG V  G++IY
Sbjct: 10  DVYNRLYRERLLFLGQEVDSEISNQLVGLMVYLSIEDNTRDLHLFINSPGGWVIPGISIY 69

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF+ P + T C+G AAS+GSL+L  GE   R A P+AR+++HQP+  F   Q  +  
Sbjct: 70  DTMQFVPPAVHTVCIGLAASIGSLILVGGEITKRIAFPHARVMIHQPASSFYESQVGEFI 129

Query: 153 RHAQDIVKIKRRLNEIYVKNCGK 175
             A++ +K++  + ++YV+   K
Sbjct: 130 LEAEEFLKLRETILKVYVQRTSK 152


>gi|283050517|gb|ADB07669.1| ATP-dependent Clp protease proteolytic subunit [Luziola fluitans]
          Length = 191

 Score =  124 bits (312), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 64/173 (36%), Positives = 101/173 (58%), Gaps = 1/173 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           + +ER +F+  +I   +   I   +++L  E+   +I L+INSPGG + +GMAI+DTMQ 
Sbjct: 2   MYRERTLFLGQEIRCEVTNHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAIFDTMQT 61

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIERHAQD 157
           + P I T C+G AASM S +L  GE   R A P+AR++LHQP S  +  +  +     ++
Sbjct: 62  VTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARVMLHQPASAYYRARTPEFLLEVEE 121

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           + K++  +  +Y    GK +  V + ++RD  MSA EA  +G+VD V    ID
Sbjct: 122 LHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEAKAYGLVDIVGDEMID 174


>gi|295814148|gb|ADG35701.1| ATP-dependent clp protease proteolytic subunit clpP [Fucus
           ceranoides]
          Length = 133

 Score =  124 bits (312), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 57/120 (47%), Positives = 84/120 (70%)

Query: 89  GMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQA 148
           G+AIYDTMQFI   ++T C G AASMG+ LL AG +G R +LPN+RI++HQP GG  GQA
Sbjct: 1   GLAIYDTMQFIPCDVATVCFGMAASMGAFLLGAGTQGKRKSLPNSRIMIHQPLGGAQGQA 60

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           +DIE  A++I+  KR LN    +   +  +++E+  DRD  M+  EA D+G++D+V+ ++
Sbjct: 61  ADIEIQAKEILYTKRLLNRYMSEYTDQPVDKIEEDTDRDFFMTPQEALDYGLIDEVIKTK 120


>gi|295814150|gb|ADG35702.1| ATP-dependent clp protease proteolytic subunit clpP [Fucus spiralis
           var. platycarpus]
 gi|295814152|gb|ADG35703.1| ATP-dependent clp protease proteolytic subunit clpP [Fucus spiralis
           var. platycarpus]
 gi|295814154|gb|ADG35704.1| ATP-dependent clp protease proteolytic subunit clpP [Fucus spiralis
           var. platycarpus]
 gi|295814156|gb|ADG35705.1| ATP-dependent clp protease proteolytic subunit clpP [Fucus spiralis
           var. platycarpus]
 gi|295814158|gb|ADG35706.1| ATP-dependent clp protease proteolytic subunit clpP [Fucus
           spiralis]
 gi|295814160|gb|ADG35707.1| ATP-dependent clp protease proteolytic subunit clpP [Fucus
           spiralis]
 gi|295814162|gb|ADG35708.1| ATP-dependent clp protease proteolytic subunit clpP [Fucus
           spiralis]
 gi|295814164|gb|ADG35709.1| ATP-dependent clp protease proteolytic subunit clpP [Fucus
           spiralis]
 gi|295814166|gb|ADG35710.1| ATP-dependent clp protease proteolytic subunit clpP [Fucus
           spiralis]
 gi|295814168|gb|ADG35711.1| ATP-dependent clp protease proteolytic subunit clpP [Fucus spiralis
           var. platycarpus]
 gi|295814170|gb|ADG35712.1| ATP-dependent clp protease proteolytic subunit clpP [Fucus spiralis
           var. platycarpus]
 gi|295814172|gb|ADG35713.1| ATP-dependent clp protease proteolytic subunit clpP [Fucus spiralis
           var. platycarpus]
 gi|295814174|gb|ADG35714.1| ATP-dependent clp protease proteolytic subunit clpP [Fucus spiralis
           var. platycarpus]
 gi|295814176|gb|ADG35715.1| ATP-dependent clp protease proteolytic subunit clpP [Fucus spiralis
           var. platycarpus]
 gi|295814178|gb|ADG35716.1| ATP-dependent clp protease proteolytic subunit clpP [Fucus
           vesiculosus]
 gi|295814180|gb|ADG35717.1| ATP-dependent clp protease proteolytic subunit clpP [Fucus
           vesiculosus]
 gi|295814182|gb|ADG35718.1| ATP-dependent clp protease proteolytic subunit clpP [Fucus
           vesiculosus]
 gi|295814184|gb|ADG35719.1| ATP-dependent clp protease proteolytic subunit clpP [Fucus
           vesiculosus]
          Length = 133

 Score =  124 bits (311), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 57/120 (47%), Positives = 84/120 (70%)

Query: 89  GMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQA 148
           G+AIYDTMQFI   ++T C G AASMG+ LL AG +G R +LPN+RI++HQP GG  GQA
Sbjct: 1   GLAIYDTMQFIPCDVATVCFGMAASMGAFLLGAGTQGKRKSLPNSRIMIHQPLGGAQGQA 60

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           +DIE  A++I+  KR LN    +   +  +++E+  DRD  M+  EA D+G++D+V+ ++
Sbjct: 61  ADIEIQAKEILYTKRLLNRYMSEYTDQPVDKIEEDTDRDFFMTPQEALDYGLIDEVIKTK 120


>gi|293418508|ref|ZP_06660943.1| Clp protease [Escherichia coli B088]
 gi|291325036|gb|EFE64451.1| Clp protease [Escherichia coli B088]
          Length = 102

 Score =  124 bits (311), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 53/101 (52%), Positives = 79/101 (78%)

Query: 108 MGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNE 167
           MGQAASMG+ LL+AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE
Sbjct: 1   MGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNE 60

Query: 168 IYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           +   + G++ E++E+  +RD  +SA EA ++G+VD +L  R
Sbjct: 61  LMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHR 101


>gi|169143056|ref|YP_001687476.1| clp protease proteolytic subunit [Oenothera parviflora]
 gi|159895582|gb|ABX10146.1| clp protease proteolytic subunit [Oenothera parviflora]
          Length = 234

 Score =  124 bits (311), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 62/189 (32%), Positives = 108/189 (57%), Gaps = 6/189 (3%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+ L + R +F+   I   +A  I   ++FL  ++  + +  +INSPGG+  AG+ IY
Sbjct: 28  DLYNVLYRTRSIFLGDAIHFEVANHIAGLMIFLTIQDATQNLYFFINSPGGLAVAGLLIY 87

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           DTMQ++ PP+ T  +G  ASM S LL  GE   R   PNAR+++HQP   ++ +   +E 
Sbjct: 88  DTMQYVTPPVYTLGLGVLASMASFLLVGGETSKRLMGPNARVMIHQPESDYTHKDRSLEV 147

Query: 154 H--AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV----LMS 207
           H  + ++  I+  +  +Y++      E +   L+R+  M+A+EA  +G+VD +    L++
Sbjct: 148 HLDSGEVEHIRNMVIRVYLERTRLPREVLNDHLERNLFMTATEAKYYGIVDDIGVENLLA 207

Query: 208 RIDIEEKSK 216
           R+  E  S+
Sbjct: 208 RLREESASQ 216


>gi|304322945|ref|YP_003795510.1| proteolytic subunit 2 of clp protease [Floydiella terrestris]
 gi|270048144|gb|ACZ58439.1| proteolytic subunit 2 of clp protease [Floydiella terrestris]
          Length = 502

 Score =  124 bits (311), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 56/146 (38%), Positives = 92/146 (63%), Gaps = 3/146 (2%)

Query: 63  LLFLEAE---NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
           LLF E     + Q+ + ++INS GG +T+G+ IYD +QF+K    T C+G A S  S++L
Sbjct: 310 LLFSETRERMSDQRRVFVFINSTGGSITSGITIYDALQFVKAGAVTVCLGMAFSASSMVL 369

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
           + G  G R+    + +++HQP GG  GQASD+   A +I++++R+   IY  +  + + E
Sbjct: 370 AGGNIGHRYVSEGSHVMMHQPEGGIKGQASDVLLDAHEILRVRRQAATIYTLSSKRAFHE 429

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVL 205
           V K LDRD+ M+  EA D+G+ D+++
Sbjct: 430 VLKDLDRDYFMTPQEAIDYGLADEIV 455


>gi|219673992|ref|YP_002456477.1| clp protease proteolytic subunit [Trifolium subterraneum]
 gi|193788961|gb|ACF20557.1| clp protease proteolytic subunit [Trifolium subterraneum]
          Length = 199

 Score =  124 bits (311), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 61/172 (35%), Positives = 105/172 (61%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y  L +ER++F+  ++   ++  +   +++L  ++  K++ L+INSPGG + +GMA++
Sbjct: 22  DLYHLLYEERLLFLGQEVNSEISNQLNGLMVYLSLQDKTKDLYLFINSPGGELMSGMAMF 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQF+K  + T C+G A SM SLLL  GE   R A  +AR+++H+P+  F   +  +  
Sbjct: 82  DTMQFVKAEVQTVCVGIAVSMASLLLLGGEITKRLAFSHARVMMHEPASVFEDDKTGECM 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A +++K+   +  IYV+  GK   ++   + RD  MSA EA  +G+VD V
Sbjct: 142 LEADELLKMYIGIINIYVQRTGKPVWQIAVDIKRDIFMSAEEAQAYGIVDMV 193


>gi|61807242|gb|AAX55773.1| hypothetical protein [Clostridium hathewayi]
          Length = 139

 Score =  124 bits (311), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 57/109 (52%), Positives = 84/109 (77%), Gaps = 2/109 (1%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+E T++GERSYD++SRLLK+RI+F+  ++ D  A L  AQ+LFLEAE+P K+I
Sbjct: 1   MSLVPNVIETTSKGERSYDLFSRLLKDRIIFLGEEVNDETARLAVAQMLFLEAEDPSKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           S YINSPGG +TAG+AIYDTM++I+  ++   + +AA++  +LL   E+
Sbjct: 61  SFYINSPGGSITAGLAIYDTMRYIR--VTYRHLYRAAAVSRILLRRYEE 107


>gi|164597829|ref|NP_084718.2| ATP-dependent Clp protease proteolytic subunit [Oenothera elata
           subsp. hookeri]
 gi|169142970|ref|YP_001687392.1| clp protease proteolytic subunit [Oenothera biennis]
 gi|172045753|sp|Q9MTJ8|CLPP_OENEH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|159793143|gb|ABW98897.1| clp protease proteolytic subunit [Oenothera biennis]
 gi|162423696|emb|CAB67184.2| clp protease proteolytic subunit [Oenothera elata subsp. hookeri]
 gi|166201963|gb|ABY84436.1| ATP-dependent protease proteolytic subunit [Oenothera elata subsp.
           hookeri]
          Length = 249

 Score =  124 bits (311), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 110/189 (58%), Gaps = 6/189 (3%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+ L + R +F+   I   +A  I   ++FL  ++  + +  +INSPGG+  AG+ IY
Sbjct: 28  DLYNVLYRTRSIFLGDAIHFEVANHIAGLMIFLTIQDATQNLYFFINSPGGLAVAGLLIY 87

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS--GQASDI 151
           DTMQ++ PP+ T  +G  ASM S LL  GE   R   PN R+++HQP   ++   Q+ ++
Sbjct: 88  DTMQYVTPPVYTLGLGVLASMASFLLVGGETSKRLMGPNGRVMIHQPESDYTHKDQSLEV 147

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV----LMS 207
           +  + ++  I++ +  +Y++      E +   L+R++ M+A+EA  +G+VD +    L++
Sbjct: 148 QLDSGEVEDIRKMVIRVYLERTRLPREVLNDHLERNYFMTATEAKYYGIVDDIGIQNLLA 207

Query: 208 RIDIEEKSK 216
           R+  E  S+
Sbjct: 208 RLRAESASQ 216


>gi|323148854|ref|YP_004221946.1| clp protease proteolytic subunit [Erodium carvifolium]
 gi|316926318|gb|ADU58171.1| clp protease proteolytic subunit [Erodium carvifolium]
          Length = 197

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 64/192 (33%), Positives = 115/192 (59%), Gaps = 5/192 (2%)

Query: 19  VPMVVEQTNRGERS--YDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  Q++  E +   D+Y+RL +ERI+F+  +I++ ++  + + ++FL+ +N     +
Sbjct: 5   VPKVSFQSHEEEDATWIDLYNRLYRERILFLCREIKEELSNNLVSLMVFLDIDNTTWTQT 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           ++I+SPGG V  G+A+YDT+  +     T C G AASM S++L  GE+  R A P+AR++
Sbjct: 65  MFIHSPGGFVFPGLAVYDTVLAVGA--RTVCAGIAASMASVVLIGGEQSKRLAFPHARVM 122

Query: 137 LHQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP    F    S+I    + ++ ++ R+  +YV+  G+ +  +   L+ D  MSA EA
Sbjct: 123 VHQPRMKDFEDSTSEILMETRVLLDLRERITHLYVQRTGQPHRIIAADLEVDTYMSAKEA 182

Query: 196 CDWGVVDKVLMS 207
             +G++D +  S
Sbjct: 183 VTYGIIDAIAQS 194


>gi|63055010|gb|AAY29043.1| predicted ATP-dependent Clp protease proteolytic subunit 2
           [Bifidobacterium longum subsp. suis]
          Length = 160

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/120 (50%), Positives = 90/120 (75%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T  G ++ D YSRL ++RI+F+  Q++D  A  + AQLL LE+++P +++ +
Sbjct: 41  IMPQFVEKTPYGMKTQDAYSRLFEDRIIFLGVQVDDASADDVMAQLLVLESQDPNRDVMM 100

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL++G KG R  LPNAR+L+
Sbjct: 101 YINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLASGTKGKRLMLPNARVLI 160


>gi|283050489|gb|ADB07648.1| ATP-dependent Clp protease proteolytic subunit [Potamophila
           parviflora]
          Length = 191

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 64/173 (36%), Positives = 100/173 (57%), Gaps = 1/173 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           + +ER +F+  +I   +   I   +++L  E+   +I  +INSPGG + +GMAI+DTMQ 
Sbjct: 2   MYRERTLFLGQEIRCEVTNHITGLMVYLSIEDGISDIFFFINSPGGWLISGMAIFDTMQT 61

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIERHAQD 157
           + P I T C+G AASM S +L  GE   R A P+ARI+LHQP S  +  +  +     ++
Sbjct: 62  VTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFLLEVEE 121

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           + K++  +  +Y    GK +  V + ++RD  MSA EA  +G+VD V    ID
Sbjct: 122 LHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEAKAYGLVDIVGDEMID 174


>gi|63055014|gb|AAY29045.1| predicted ATP-dependent Clp protease proteolytic subunit 2
           [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 160

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/120 (50%), Positives = 90/120 (75%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T  G ++ D YSRL ++RI+F+  Q++D  A  + AQLL LE+++P +++ +
Sbjct: 41  IMPQFVEKTPYGMKTQDAYSRLFEDRIIFLGVQVDDASADDVMAQLLVLESQDPNRDVMM 100

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL++G KG R  LPNAR+L+
Sbjct: 101 YINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLASGTKGKRLMLPNARVLI 160


>gi|110456731|gb|ABG74834.1| ATP-dependent protease catalytic subunit [Jasminum subhumile]
          Length = 229

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 107/176 (60%), Gaps = 4/176 (2%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL +E ++F+  +I+  ++  I + +L+L   +P ++  ++INSPGG +  GM IY
Sbjct: 40  DVYTRLYQEGVLFLADEIDSELSNEIISAMLYLNMVDPTQDQYVFINSPGGSILYGMGIY 99

Query: 94  DTMQFIK--PPISTFCMGQAASMGSLLLSAGEKGMRFALPNA-RILLHQPS-GGFSGQAS 149
           DTM+F+     + T C G A SM SLLL  G +  R A P+A R+++HQP+      ++ 
Sbjct: 100 DTMEFVSADADVHTICFGVARSMASLLLVGGVENKRMAFPHAIRVMIHQPAVSRIVARSK 159

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            + R  + +  +KR +   Y +  G+    +E+ ++RDH MSA EA  +G+VD+++
Sbjct: 160 RLLREVEFLKSLKRDIIAEYAERTGQPLWVIERDIERDHFMSAREAKGYGIVDEIV 215


>gi|261883798|ref|ZP_06007837.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
          fetus subsp. venerealis str. Azul-94]
          Length = 85

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 55/81 (67%), Positives = 71/81 (87%)

Query: 19 VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
          +P VVE+T++GERSYDIYSRLLK+RI+ ++G+IED MA+ I AQ+LFLEAE+P K+I LY
Sbjct: 5  IPYVVERTSKGERSYDIYSRLLKDRIIMLSGEIEDAMASAIVAQMLFLEAEDPDKDIYLY 64

Query: 79 INSPGGVVTAGMAIYDTMQFI 99
          INS GGVVT+G +IYDTM +I
Sbjct: 65 INSTGGVVTSGFSIYDTMNYI 85


>gi|296139201|ref|YP_003646444.1| endopeptidase Clp [Tsukamurella paurometabola DSM 20162]
 gi|296027335|gb|ADG78105.1| Endopeptidase Clp [Tsukamurella paurometabola DSM 20162]
          Length = 206

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/193 (37%), Positives = 108/193 (55%), Gaps = 10/193 (5%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP   E+  R          L  +R+V + G ++D    L+  QLL L A++  +EI+L+
Sbjct: 7   VPQFTERVRR---------ELYDQRVVILDGPLDDDNGALLATQLLSLAADS-DREIALW 56

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           I+SPGG V A +AI D M+ I   +ST   G A S G  LLSAG +G R ALP+AR+L+H
Sbjct: 57  IHSPGGSVPAMLAIRDVMRLIPCDVSTLVFGIAYSAGQFLLSAGTRGKRRALPHARVLMH 116

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           Q S G  G A DIE  A D+   +  +  +  ++ G+  E++ +    D   +A EA D+
Sbjct: 117 QGSAGIGGTAVDIELQAGDLRHTRDTVLGLIAEDTGRPEEQIFEDSLHDRWYTAREAQDY 176

Query: 199 GVVDKVLMSRIDI 211
           G +D+++ S  DI
Sbjct: 177 GFIDEIVESFDDI 189


>gi|255025053|ref|ZP_05297039.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes FSL J1-208]
          Length = 117

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 55/112 (49%), Positives = 79/112 (70%)

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQ 156
            F+K  + T  MG AASMGS LL+AG  G RFALPNA I++HQP GG  GQA++IE  A+
Sbjct: 1   NFVKADVQTIGMGMAASMGSFLLTAGASGKRFALPNAEIMIHQPLGGAQGQATEIEIAAR 60

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
            I+KIK R+N I  +  G+ YE + +  DRD+ M+A EA D+G++D +++++
Sbjct: 61  HILKIKERMNTIMAEKTGQPYEVIARDTDRDNFMTAQEAKDYGLIDDIIINK 112


>gi|284052221|ref|ZP_06382431.1| ATP-dependent Clp protease-like protein [Arthrospira platensis str.
           Paraca]
          Length = 202

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/196 (36%), Positives = 113/196 (57%), Gaps = 20/196 (10%)

Query: 39  LLKERIVFVTG----------QIEDHMATLICAQLLFLEAENPQKEISLYINSPG----- 83
           LLKERI+++            Q+   +  LI AQLL+L+  +P+K I  YINS G     
Sbjct: 2   LLKERIIYLGSPLVSSDDYKRQLGVDVTKLIIAQLLYLQFSDPEKPIFFYINSTGTSWYT 61

Query: 84  ----GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
               G  T   AI DT+ ++KPP+ T C+GQA    +++LSAG KG R +LP+A I+L+Q
Sbjct: 62  GDAIGQDTEAFAICDTINYVKPPVHTICIGQAMGTAAMILSAGTKGCRTSLPHATIVLNQ 121

Query: 140 PSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           P  G    QA+DI+  A++++  K  +  I  KN G+  E++ K  DR   ++   A ++
Sbjct: 122 PRMGMGRSQATDIQIRAKEVLANKASILGILSKNTGQPVEKIAKDTDRMFYLTPEAAKEY 181

Query: 199 GVVDKVLMSRIDIEEK 214
           G++D+VL S  ++ ++
Sbjct: 182 GLIDRVLESTKELPKQ 197


>gi|83645181|ref|YP_433616.1| ATP-dependent Clp protease proteolytic subunit ClpP [Hahella
           chejuensis KCTC 2396]
 gi|83633224|gb|ABC29191.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Hahella
           chejuensis KCTC 2396]
          Length = 194

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/188 (38%), Positives = 111/188 (59%), Gaps = 6/188 (3%)

Query: 25  QTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG 84
           +T+R E  Y       K R VF+ G++   MA   C +L+ L AE+ +  I + I+SPGG
Sbjct: 13  KTDRIEEQYS-----FKSRFVFIFGEVNHEMAQATCQRLIAL-AEDSEDPIRVLISSPGG 66

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
            V +G AI+D ++FI+ P+ T   G  AS G+ +  A EK  R  LPN R ++HQP GG 
Sbjct: 67  HVESGDAIHDIIRFIRAPVITVGAGWVASAGTHIYLAAEKERRVCLPNTRFMIHQPGGGA 126

Query: 145 SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            G ASDI   A++I++ + R+  +  +  GK +E+V   ++RD  MS  EA D+G+V +V
Sbjct: 127 GGPASDIAIQAKEILRARERIAHVVARQTGKPFEKVLVDIERDFWMSPEEAMDYGIVSRV 186

Query: 205 LMSRIDIE 212
           + S  D++
Sbjct: 187 VESYKDLQ 194


>gi|1002866|gb|AAC44552.1| ClpP [Paracoccus denitrificans]
          Length = 211

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 98/163 (60%), Gaps = 1/163 (0%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
           V V G I D +A    A LL L AE+  + I++ I+SPGG V +G  I+D ++FI+P + 
Sbjct: 45  VIVAGPITDKLAQRTVAHLLAL-AEDSDEPINMLISSPGGHVESGDMIHDVIKFIRPTVR 103

Query: 105 TFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRR 164
           T  +   AS G+L+    +K  R+ LPN R L+HQPS G  G ++D+   A+ +  ++ R
Sbjct: 104 TIGLAWVASAGALIFVGADKENRYCLPNTRFLIHQPSVGIGGTSTDMMIQAEQVRLMRDR 163

Query: 165 LNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           LN+I+ +  G+  E +EK   RD  ++  EA D+G++ KV+ S
Sbjct: 164 LNQIFAEATGQPVERIEKDTQRDFWLNTQEALDYGLLGKVIRS 206


>gi|18267033|sp|P54414|CLPP_PARDE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
          Length = 199

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 98/163 (60%), Gaps = 1/163 (0%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
           V V G I D +A    A LL L AE+  + I++ I+SPGG V +G  I+D ++FI+P + 
Sbjct: 33  VIVAGPITDKLAQRTVAHLLAL-AEDSDEPINMLISSPGGHVESGDMIHDVIKFIRPTVR 91

Query: 105 TFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRR 164
           T  +   AS G+L+    +K  R+ LPN R L+HQPS G  G ++D+   A+ +  ++ R
Sbjct: 92  TIGLAWVASAGALIFVGADKENRYCLPNTRFLIHQPSVGIGGTSTDMMIQAEQVRLMRDR 151

Query: 165 LNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           LN+I+ +  G+  E +EK   RD  ++  EA D+G++ KV+ S
Sbjct: 152 LNQIFAEATGQPVERIEKDTQRDFWLNTQEALDYGLLGKVIRS 194


>gi|169142735|ref|YP_001687162.1| clp protease proteolytic subunit [Oenothera argillicola]
 gi|159792973|gb|ABW98729.1| clp protease proteolytic subunit [Oenothera argillicola]
          Length = 251

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 62/189 (32%), Positives = 107/189 (56%), Gaps = 6/189 (3%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+ L + R +F+   I   +A  I   ++FL  ++  + +  +INSPGG+  AG+ IY
Sbjct: 30  DLYNVLYRTRSIFLGDAIHFEVANHIAGLMIFLTIQDATQNLYFFINSPGGLAVAGLLIY 89

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           DTMQ++ PP+ T  +G  ASM S LL  GE   R   PNAR+++HQP   ++ +   +E 
Sbjct: 90  DTMQYVTPPVYTLGLGVLASMASFLLVGGETSKRLMGPNARVMIHQPESDYTHKDRSLEV 149

Query: 154 H--AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV----LMS 207
           H  + ++  I+  +  +Y++      E +   L+R+  M+A+EA  +G+VD +    L +
Sbjct: 150 HLDSGEVEHIRNMVIRVYLERTRLPREVLNDHLERNLFMTATEAKYYGIVDDIGVENLFA 209

Query: 208 RIDIEEKSK 216
           R+  E  S+
Sbjct: 210 RLREESASQ 218


>gi|302835744|ref|XP_002949433.1| hypothetical protein VOLCADRAFT_89887 [Volvox carteri f.
           nagariensis]
 gi|300265260|gb|EFJ49452.1| hypothetical protein VOLCADRAFT_89887 [Volvox carteri f.
           nagariensis]
          Length = 269

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 108/175 (61%), Gaps = 2/175 (1%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D++     +++VF+   I + +A  + A  L+L++ +  K I  ++N PGG V   +A+Y
Sbjct: 73  DLWEAYTYQKVVFIKEAITEEVANNMIALTLYLDSLD-NKRIYYWLNCPGGEVVPTLALY 131

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLS-AGEKGMRFALPNARILLHQPSGGFSGQASDIE 152
           DTMQ+++   +T C G    MG  LL+  GEKG RFA+P++ +++H PSG   GQAS++ 
Sbjct: 132 DTMQYVRSKTATVCYGLCLGMGGFLLTTGGEKGYRFAMPHSILMMHHPSGASRGQASEMH 191

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
             ++++V+++  L+ +   + G+ Y+ V + L R+  M   +A ++G++DKVL +
Sbjct: 192 IESRELVRMRDYLSLLVSNSTGQPYDRVIRELSRNKWMDPKQAIEYGMIDKVLTT 246


>gi|115349976|ref|YP_764387.1| proteolytic subunit 2 of clp protease [Stigeoclonium helveticum]
 gi|98990190|gb|ABF60157.1| proteolytic subunit 2 of clp protease [Stigeoclonium helveticum]
          Length = 518

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/146 (39%), Positives = 92/146 (63%), Gaps = 3/146 (2%)

Query: 63  LLFLEAE---NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
           LLF+E +     Q  + ++INS GG V++G+ IYD +QF+K    T C+G A S  S++L
Sbjct: 324 LLFMETQERLQEQSRVFVFINSTGGSVSSGITIYDALQFVKTGAVTVCLGMAFSASSMVL 383

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
           + G  G R+    A +++HQP GG +GQASD+   A +I++I+R++  IY     +   E
Sbjct: 384 AGGNIGHRYVAEGAHVMIHQPEGGITGQASDVLLDAYEILRIRRQVATIYSLCSKRALSE 443

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVL 205
           V K LDRD+ M+  EA D+G+ D+++
Sbjct: 444 VLKDLDRDNFMTPQEAVDYGLADEIV 469


>gi|297745678|emb|CBI40932.3| unnamed protein product [Vitis vinifera]
          Length = 282

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/225 (37%), Positives = 126/225 (56%), Gaps = 19/225 (8%)

Query: 2   SFEGCAKKDSEDVFLGLVPMVVEQTNRG----ERSYDIYSRLLKERIVFVTGQIEDHMAT 57
           SF G   K       G V MV+  T RG    +   D+ S L K RIV++   +   +  
Sbjct: 53  SFSGSHAKR------GGVTMVIPFT-RGSALDQPPPDLPSYLFKNRIVYLGMSLVPSVTE 105

Query: 58  LICAQLLFLEAENPQKEISLYINSPG--------GVVTAGMAIYDTMQFIKPPISTFCMG 109
           LI A+ L+L+ ++ +K I LYINS G        G  T   AIYD M ++K PI T C+G
Sbjct: 106 LILAEFLYLQYDDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKSPIFTLCVG 165

Query: 110 QAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIY 169
            A    +LLL+AG KG R ALP++ I++ QP   F GQA+DI+   +++  +K  L ++Y
Sbjct: 166 NAWGEAALLLAAGAKGNRSALPSSTIMIKQPIARFQGQATDIDLARKEVKNVKAELVKLY 225

Query: 170 VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
            K+ GK+ EE+E  + R    S SEA ++G++DKVL +    E++
Sbjct: 226 AKHIGKSPEEIEADIRRPKYFSPSEAVEYGIIDKVLYNERSSEDR 270


>gi|325972142|ref|YP_004248333.1| ATP-dependent Clp protease proteolytic subunit [Spirochaeta sp.
           Buddy]
 gi|324027380|gb|ADY14139.1| ATP-dependent Clp protease proteolytic subunit [Spirochaeta sp.
           Buddy]
          Length = 191

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/174 (39%), Positives = 104/174 (59%), Gaps = 1/174 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I  +LLK R + ++G+I    A ++  QLL LE E+  + I ++INSPGG V AG AI+D
Sbjct: 16  IQEKLLKTRSILLSGEINKETAEVMIKQLLVLEGES-NEPIKIFINSPGGDVDAGYAIFD 74

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
             +FI  P++   MG  AS  +L+L A     R ALPN+  L+HQP  G  G A+DIE H
Sbjct: 75  MARFITAPVTMIGMGLVASAAALVLLAVPVERRIALPNSTYLIHQPMSGMRGVATDIEIH 134

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           A  + K++ +L+ +     GK+ E+V    +RDH ++A EA  +G+V  ++  R
Sbjct: 135 ALHLEKLRLKLDALIAAETGKSAEDVRLDTERDHWLTAEEAKAYGLVSNIVSHR 188


>gi|145350842|ref|XP_001419805.1| chloroplast Clp protease, subunit of ClpP peptidase complex
           [Ostreococcus lucimarinus CCE9901]
 gi|144580037|gb|ABO98098.1| chloroplast Clp protease, subunit of ClpP peptidase complex
           [Ostreococcus lucimarinus CCE9901]
          Length = 210

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 110/187 (58%), Gaps = 2/187 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP++V     G    D++  L ++RIVF+  +I++ +A   CA+LL LE+E+P+ EI ++
Sbjct: 26  VPVMVPDGRGG--GEDVFGALARDRIVFLGTRIDEQVAAETCARLLQLESEDPEGEIRVW 83

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           +N   G      AI DTM+++  P+ST  +G  A    +L++AG+KG R+ + +ARI+L 
Sbjct: 84  VNCVAGTQYCVTAILDTMEYVSCPVSTVALGCVAGPPVMLVAAGDKGKRYGMSSARIVLS 143

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG +G + +++  A ++ +  +       K  G+  +E+E  + RD  M   EA D+
Sbjct: 144 QPLGGLAGTSIEVKIQATELNRNAKAQVGFIAKYTGRDADELEAMMARDTYMGVDEAIDF 203

Query: 199 GVVDKVL 205
           G++D  L
Sbjct: 204 GLIDHAL 210


>gi|209527270|ref|ZP_03275781.1| Endopeptidase Clp [Arthrospira maxima CS-328]
 gi|209492337|gb|EDZ92681.1| Endopeptidase Clp [Arthrospira maxima CS-328]
          Length = 230

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/194 (35%), Positives = 112/194 (57%), Gaps = 20/194 (10%)

Query: 41  KERIVFVTG----------QIEDHMATLICAQLLFLEAENPQKEISLYINSPG------- 83
           KERI+++            Q+   +  LI AQLL+L+  +P+K I  YINS G       
Sbjct: 32  KERIIYLGSPLVSSDDYKRQLGVDVTKLIIAQLLYLQFSDPEKPIYFYINSTGTSWYTGD 91

Query: 84  --GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
             G  T   AI DTM ++KPP+ T C+GQA    +++LSAG KG R +LP+A I+L+QP 
Sbjct: 92  AIGQDTEAFAICDTMSYVKPPVHTICIGQAMGTAAMILSAGTKGCRTSLPHATIVLNQPR 151

Query: 142 GGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            G    QA+DI+  A++++  K  + +I  +N G+  E++ K  DR   ++   A ++G+
Sbjct: 152 MGMGRSQATDIQIRAKEVLANKASILDILSQNTGQPVEKIAKDTDRMFYLTPEAAKEYGL 211

Query: 201 VDKVLMSRIDIEEK 214
           +D+VL S  ++ ++
Sbjct: 212 IDRVLESTKELPKQ 225


>gi|255635880|gb|ACU18287.1| unknown [Glycine max]
          Length = 304

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/216 (37%), Positives = 121/216 (56%), Gaps = 19/216 (8%)

Query: 2   SFEGCAKKDSEDVFLGLVPMVVEQTNRG----ERSYDIYSRLLKERIVFVTGQIEDHMAT 57
           SF G   K       G+V MV+    RG    +   D+ S L K RIV++   +   +  
Sbjct: 75  SFRGSNSKR------GVVTMVIP-FQRGSAWEQPPPDLASYLYKNRIVYLGMSLVPSVTE 127

Query: 58  LICAQLLFLEAENPQKEISLYINSPG--------GVVTAGMAIYDTMQFIKPPISTFCMG 109
           LI A+ L+L+ E+  K I LYINS G        G  T   AIYD M+++KPPI T C+G
Sbjct: 128 LILAEFLYLQYEDDDKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMRYVKPPIFTLCVG 187

Query: 110 QAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIY 169
            A    +LLL+AG KG R ALP++ I++ QP   F GQA+D+    +++  +K  L ++Y
Sbjct: 188 NAWGEAALLLAAGAKGNRSALPSSTIMIRQPIARFQGQATDVNLARREVNNVKTELVKLY 247

Query: 170 VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            K+  KT E++E  + R    S SEA ++G++DKV+
Sbjct: 248 AKHMEKTPEQIEADIQRPKYFSPSEAVEYGIIDKVI 283


>gi|283050528|gb|ADB07677.1| ATP-dependent Clp protease proteolytic subunit [Ehrharta erecta]
          Length = 180

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 64/165 (38%), Positives = 98/165 (59%), Gaps = 5/165 (3%)

Query: 47  VTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTF 106
           + G+I +H+  L    +++L  E+   +I L+INSPGG + +GMAI+DTMQ + P I T 
Sbjct: 3   IRGEITNHITGL----MVYLSIEDGISDIFLFINSPGGWLISGMAIFDTMQTVTPDIYTI 58

Query: 107 CMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIERHAQDIVKIKRRL 165
           C+G AASM S +L  GE   R A P+ARI+LHQP S  +  +  +     +++ K++  +
Sbjct: 59  CLGIAASMASFILLGGEPTKRIAFPHARIMLHQPASAYYRARVPEFLLEVEELHKVREMI 118

Query: 166 NEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
             +Y    GK +  V + ++RD  MSA EA  +G+VD V    ID
Sbjct: 119 TRVYALRTGKPFWVVSEDMERDVFMSAEEAKAYGLVDTVGDEMID 163


>gi|219113429|ref|XP_002186298.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583148|gb|ACI65768.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 199

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 64/172 (37%), Positives = 98/172 (56%), Gaps = 9/172 (5%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------GVVTAGMAIY 93
           RIV++   +   +  L+ A+LL+L  E+  + I++YINS G         G  T   AI 
Sbjct: 13  RIVYIGMPLVPAVTELVIAELLYLNYESTTEPITMYINSSGTSTANGQAVGFETEAFAIA 72

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M++++PP+ T  +GQA    ++LLS G++G RFALPNA ILL+QP     GQASDI  
Sbjct: 73  DVMKYVRPPVHTVALGQAFGAAAMLLSQGKRGSRFALPNATILLNQPKSQARGQASDIAI 132

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            A+++   +R   E+    CGK  E V +   R   +   EA ++G++D V+
Sbjct: 133 KAREVAHNRRTTCELIASACGKPVETVMEDCSRVKYLQPHEAVEYGLIDAVV 184


>gi|166201969|gb|ABY84440.1| ATP-dependent protease proteolytic subunit [Oenothera macrocarpa]
          Length = 408

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 63/172 (36%), Positives = 105/172 (61%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+++ L + R VF+  ++ +     I + ++FL  ENP+K I  ++NSPGG+  AG+AI 
Sbjct: 22  DLFNGLFRARSVFLGQELNEEGGNDIASLMIFLALENPKKSIYFFLNSPGGLALAGLAIS 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS-DIE 152
           DTM F+ P + T  +G  ASM S LL+ G  G R A  + R ++HQPS  F  +A+ +JE
Sbjct: 82  DTMDFVTPDVYTLGLGLVASMASFLLACGTPGKRRASDHMRAMIHQPSSKFLNEAALNJE 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
              +++  I+  + + YV+  G+    +++ L RD  MSA+E+ D+G+VD V
Sbjct: 142 FSRRELQSIRDIVIKTYVEKTGQDARVIKEDLRRDSFMSATESKDYGLVDDV 193


>gi|323491854|ref|ZP_08097029.1| ATP-dependent Clp protease proteolytic subunit [Vibrio brasiliensis
           LMG 20546]
 gi|323313989|gb|EGA67078.1| ATP-dependent Clp protease proteolytic subunit [Vibrio brasiliensis
           LMG 20546]
          Length = 156

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 59/153 (38%), Positives = 99/153 (64%), Gaps = 1/153 (0%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMG 115
           A  +C  L +L++ +  ++I++ INSPGG V +G +I+D ++F+   +     G  AS G
Sbjct: 1   AEKVCRSLAYLDSVS-NEDITIMINSPGGHVESGDSIHDMIKFVTSKVIIIGTGYVASAG 59

Query: 116 SLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK 175
           + +  A EK  R+ALPN R ++HQPSGG  GQ SDI    ++I K+KRR+ ++     G+
Sbjct: 60  THIYLAAEKCNRYALPNTRFMIHQPSGGSQGQVSDILIQMEEISKMKRRIAKVISDATGQ 119

Query: 176 TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
             ++V + +DRDH M+A EA D+G+V++++ S+
Sbjct: 120 DMDKVLEDIDRDHWMTAQEAVDYGIVNEIIESQ 152


>gi|302801676|ref|XP_002982594.1| hypothetical protein SELMODRAFT_116719 [Selaginella moellendorffii]
 gi|302823376|ref|XP_002993341.1| hypothetical protein SELMODRAFT_136938 [Selaginella moellendorffii]
 gi|300138850|gb|EFJ05603.1| hypothetical protein SELMODRAFT_136938 [Selaginella moellendorffii]
 gi|300149693|gb|EFJ16347.1| hypothetical protein SELMODRAFT_116719 [Selaginella moellendorffii]
          Length = 218

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/191 (39%), Positives = 116/191 (60%), Gaps = 10/191 (5%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG--------GV 85
           D+ S L   RIVF+   +   +  LI A+ L+L+  +P+K I +YINS G        G 
Sbjct: 17  DLPSYLFHNRIVFLGMSLVPAVTELIMAEFLYLQFVDPEKPIYMYINSTGTTKDGEKLGY 76

Query: 86  VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS 145
            T  +A+YDTMQ++KPPI T C+G A    +LLL+AG KG R ALP+  I+L +P   F 
Sbjct: 77  ETEALAMYDTMQYVKPPIFTLCVGNAWGEAALLLAAGAKGNRSALPSTTIMLKEPIAQFR 136

Query: 146 GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           GQA+DI+   +++  +K+ L E+  ++ G+  +++E+ + R    S  EA D+G++DKVL
Sbjct: 137 GQATDIDIARREVRNLKKDLVELLERHTGQPADKIEEDIRRPKYFSPDEAVDYGLIDKVL 196

Query: 206 MSRIDIEEKSK 216
             R +  EKSK
Sbjct: 197 --RTEKGEKSK 205


>gi|297840997|ref|XP_002888380.1| clp protease proteolytic subunit [Arabidopsis lyrata subsp. lyrata]
 gi|297334221|gb|EFH64639.1| clp protease proteolytic subunit [Arabidopsis lyrata subsp. lyrata]
          Length = 172

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 101/166 (60%), Gaps = 7/166 (4%)

Query: 40  LKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
            ++R+ F+  +++  ++  + + +++L  E   K++ L+INSPGG V +GMAIYDTMQF+
Sbjct: 10  FRKRLFFLGQEVDTEISNQLISLMIYLSIEKDTKDLYLFINSPGGWVISGMAIYDTMQFV 69

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIERHAQDI 158
           +P + T CMG AAS+ S +L  G      A+    +++HQP+  F   Q  +    A+++
Sbjct: 70  RPDVQTICMGLAASIASFILVGG------AITKRWVMIHQPASSFYEAQTGEFILEAEEL 123

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           +K++  +  +YV+  GK    V + ++RD  MSA+EA   G+VD V
Sbjct: 124 LKLRETMTRVYVQRTGKPIWVVSEDMERDVFMSATEAQAHGIVDLV 169


>gi|169142885|ref|YP_001687308.1| clp protease proteolytic subunit [Oenothera glazioviana]
 gi|159895497|gb|ABX10062.1| clp protease proteolytic subunit [Oenothera glazioviana]
          Length = 250

 Score =  122 bits (305), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 108/189 (57%), Gaps = 6/189 (3%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+ L + R +F+   I   +A  I   ++FL  ++  + +  +INSPGG+  AG+ IY
Sbjct: 29  DLYNVLYRTRSIFLGDAIHFEVANHIAGLMIFLTIQDATQNLYFFINSPGGMAVAGLLIY 88

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           DTMQ++ PP+ T  +G  ASM S LL  GE   R   PNAR+++HQP   ++ +   +E 
Sbjct: 89  DTMQYVTPPVYTLGLGVLASMASFLLVGGETSKRLMGPNARVMIHQPESDYTHKDKTLEV 148

Query: 154 H--AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV----LMS 207
              + ++  I+  +  +Y++      E +   L+R++ M+A+EA  +G+VD +    L++
Sbjct: 149 QLDSGEVEDIRNMVIRVYLERTRLPREVLNDHLERNYFMTATEAKYYGIVDDIGIQNLLA 208

Query: 208 RIDIEEKSK 216
           R+  E  S+
Sbjct: 209 RLREESASQ 217


>gi|221059998|ref|XP_002260644.1| ATP-dependent Clp protease [Plasmodium knowlesi strain H]
 gi|193810718|emb|CAQ42616.1| ATP-dependent Clp protease, putative [Plasmodium knowlesi strain H]
          Length = 1101

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 65/182 (35%), Positives = 108/182 (59%), Gaps = 11/182 (6%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV--------- 85
           I S LL +RI+F++  +  H++  I +QLL+LE E+ +K I LYINS G +         
Sbjct: 70  IPSMLLSKRIIFLSSPVYPHISEQIISQLLYLEYESKRKPIHLYINSTGDLENNKIINLN 129

Query: 86  -VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
            +T  ++I D +++I   + T+C+G+A  +  +L S+G+KG RF+L N+   L+Q     
Sbjct: 130 GITDVISIIDVIEYISSDVYTYCLGKAYGISCILASSGKKGFRFSLKNSSFCLNQSYSVI 189

Query: 145 S-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
              QA++IE   ++I+  KR++ EI   N GK    +E+ L+RD   SA EA ++ +VD 
Sbjct: 190 PFNQATNIEIQNKEIMNTKRKVVEIIANNTGKDKSHIEQILERDRYFSAPEAVEFNLVDH 249

Query: 204 VL 205
           +L
Sbjct: 250 IL 251


>gi|239814219|ref|YP_002943129.1| endopeptidase Clp [Variovorax paradoxus S110]
 gi|239800796|gb|ACS17863.1| Endopeptidase Clp [Variovorax paradoxus S110]
          Length = 198

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 105/182 (57%)

Query: 31  RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGM 90
           R+  +  +  K R + + G I D +A  +  +L+ L+A++  K I + ++SPGG + +G 
Sbjct: 16  RNSYLEEKAFKSRTLLIFGSITDSVAADVTRRLIALDADSGDKPIDILVSSPGGHLESGD 75

Query: 91  AIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASD 150
           AI+D ++FI  P++    G   S  + L  A  +  R  LPN R L+HQPSGG  GQA+D
Sbjct: 76  AIHDIVRFISAPVNMIGTGWVGSAATHLYLAVPRERRVCLPNTRFLIHQPSGGAGGQATD 135

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           I   AQ+I+K + R+     +  GK  + V   ++RD  +SA+EA ++G+V +++  + +
Sbjct: 136 IAIQAQEIIKARHRIAHEIARETGKPIDVVLADIERDRWLSAAEAVEYGLVSRIIQRKTE 195

Query: 211 IE 212
           + 
Sbjct: 196 LH 197


>gi|163858206|ref|YP_001632505.1| ATP-dependent Clp protease proteolytic component [Bordetella petrii
           DSM 12804]
 gi|163261934|emb|CAP44236.1| similar to ATP-dependent Clp protease proteolytic component
           [Bordetella petrii]
          Length = 217

 Score =  121 bits (304), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 62/183 (33%), Positives = 103/183 (56%), Gaps = 1/183 (0%)

Query: 29  GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTA 88
           G+ S  +  +  + R V V G I D +A+    +LL L+AE+    I + ++SPGG + +
Sbjct: 33  GQNSAFLEEKTFRTRTVLVFGTITDAVASETVRRLLTLDAES-DAPIDMIVSSPGGHLES 91

Query: 89  GMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQA 148
           G AI+D  +FI  P++    G   S  + L     +  RF LP  R L+HQPSGG  G A
Sbjct: 92  GDAIHDVARFISAPVNMIGTGWVGSAATHLYLGAPRERRFCLPQTRFLIHQPSGGAGGPA 151

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           SD+  HA++I++ + R+ ++  +  G+  E V + ++RD  MSA EA  +G+  +++  R
Sbjct: 152 SDMAIHAKEIIRARERIAQVIARETGQPIERVRQDIERDLWMSAEEAIAYGLASRIIERR 211

Query: 209 IDI 211
            D+
Sbjct: 212 GDL 214


>gi|296284618|ref|ZP_06862616.1| ATP-dependent Clp protease proteolytic subunit [Citromicrobium
           bathyomarinum JL354]
          Length = 207

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 64/171 (37%), Positives = 98/171 (57%), Gaps = 1/171 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           + ++ L  R V + G ++  MA  I  QLL+L+  +  + I + +NSPGG V +G  I+D
Sbjct: 29  MMNKFLDARTVLIFGGVDQKMAERISMQLLYLDHVS-HEPIRVIVNSPGGHVESGDTIHD 87

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            + FI  P++    G  AS+ + +  +     RF LPN R L+HQPSGG  G ASDI   
Sbjct: 88  LISFIASPVAMIGTGWVASIATHIFLSVPAERRFCLPNTRFLIHQPSGGARGMASDIAIQ 147

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           AQ+IVK++ R+        G+  E+V K +DRD  M+  EA D+G++  V+
Sbjct: 148 AQEIVKMRERIAHKISDATGQPVEKVIKDIDRDFWMNTEEAKDYGILGTVI 198


>gi|298248117|ref|ZP_06971922.1| Endopeptidase Clp [Ktedonobacter racemifer DSM 44963]
 gi|297550776|gb|EFH84642.1| Endopeptidase Clp [Ktedonobacter racemifer DSM 44963]
          Length = 183

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 61/152 (40%), Positives = 99/152 (65%), Gaps = 4/152 (2%)

Query: 38  RLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97
           + LK+ I+ +   IED +A  I  QL +L++E+  ++I LY+NSPGG + AG+AIYD +Q
Sbjct: 15  QFLKKFILCINTAIEDSVANSIITQLFYLQSEDATRDIHLYLNSPGGNIYAGLAIYDAIQ 74

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
            ++P I+T+C+G+ +   +LLL+AGEKG R+ALP + I L Q   G  G  + IE  A++
Sbjct: 75  SLRPEIATYCLGRTSGFATLLLAAGEKGRRYALPTSTIGLTQVVAG--GGPAAIEITARE 132

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           I+ ++R L  ++VK   ++   + +  D DHI
Sbjct: 133 ILHLRRLLVNLFVKQTRQSDATIRE--DMDHI 162


>gi|298710838|emb|CBJ26347.1| ATP-dependent Clp protease, proteolytic subunit [Ectocarpus
           siliculosus]
          Length = 237

 Score =  120 bits (302), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 65/172 (37%), Positives = 96/172 (55%), Gaps = 28/172 (16%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           DIY+RL +ERI+F+  +I+D +A  I   LL+L++E+  K I LY+N PGG V AG+A++
Sbjct: 89  DIYNRLYRERIIFLGQEIDDELANQIIGVLLYLDSEDSTKPIYLYVNCPGGSVIAGLALF 148

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           DTMQ I+  + T  +G AASM S +L+AG K                             
Sbjct: 149 DTMQHIRSEVVTINVGLAASMASFILAAGAK----------------------------V 180

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            A  I+ I+  +  +Y    G+T E++   LDRD+ MSA  A D+G+VD V+
Sbjct: 181 EATQIMHIRDNIVRMYAMMTGQTQEQITIDLDRDNFMSAQAAADYGLVDNVI 232


>gi|291569212|dbj|BAI91484.1| ATP-dependent Clp protease proteolytic subunit [Arthrospira
           platensis NIES-39]
          Length = 230

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/194 (35%), Positives = 111/194 (57%), Gaps = 20/194 (10%)

Query: 41  KERIVFVTG----------QIEDHMATLICAQLLFLEAENPQKEISLYINSPG------- 83
           KERI+++            Q+   +  LI AQLL+L+  +P+K I  YINS G       
Sbjct: 32  KERIIYLGSPLVSSDEYKRQLGVDVTKLIIAQLLYLQFSDPEKPIFFYINSTGTSWYTGD 91

Query: 84  --GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
             G  T   AI DT+ ++KPP+ T C+GQA    +++LSAG KG R +LP+A I+L+QP 
Sbjct: 92  AIGQDTEAFAICDTINYVKPPVHTICIGQAMGTAAMILSAGTKGCRTSLPHATIVLNQPR 151

Query: 142 GGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            G    QA+DI+  A++++  K  +  I  KN G+  E++ K  DR   ++   A ++G+
Sbjct: 152 MGMGRSQATDIQIRAKEVLANKASILGILSKNTGQPVEKIAKDTDRMFYLTPEAAKEYGL 211

Query: 201 VDKVLMSRIDIEEK 214
           +D+VL S  ++ ++
Sbjct: 212 IDRVLESTKELPKQ 225


>gi|307718260|ref|YP_003873792.1| hypothetical protein STHERM_c05540 [Spirochaeta thermophila DSM
           6192]
 gi|306531985|gb|ADN01519.1| hypothetical protein STHERM_c05540 [Spirochaeta thermophila DSM
           6192]
 gi|315185422|gb|EFU19194.1| ATP-dependent Clp protease proteolytic subunit ClpP [Spirochaeta
           thermophila DSM 6578]
          Length = 194

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 106/173 (61%), Gaps = 1/173 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +  + L+ R + ++G++   +   +  QLL LE    +  + ++I+SPGG V AG AI+D
Sbjct: 18  LMEKFLRTRSIILSGEVNKELVEKVVKQLLLLEQMGDEP-VKVFIDSPGGDVDAGFAIFD 76

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            ++F+  P+ T  MG  AS  +L+L A  K  R  LPN+  L+HQP  G  G A++IE H
Sbjct: 77  MIRFVGVPVYTIGMGLVASAAALILLAAPKEYRLGLPNSHYLIHQPWSGMRGVATEIEIH 136

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A++I + + ++N+I  +  G+  E+VEK  DRD+ ++A EA  +G++ +++ S
Sbjct: 137 AKEIERTRHKINQIISEETGRPLEQVEKDTDRDYWLNAGEALSYGLISRIISS 189


>gi|303270891|ref|XP_003054807.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226462781|gb|EEH60059.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 210

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 106/187 (56%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG  P+ V     G    D ++ L + R++F+  +I++ +AT +CA+LL L+ + P K+I
Sbjct: 8   LGDPPVNVAVRTSGGEMIDCFTALERNRVIFIGDRIDEDVATSVCAKLLALQYDAPDKDI 67

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           ++++N   G       I D M ++   IS   MG  A   ++LL+   KG R ALP+ARI
Sbjct: 68  TIFLNCTAGTQYCVTTILDMMDYVSNDISVVAMGCVAGPPAMLLAGATKGKRLALPSARI 127

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +L QP GG SG + +++  A+++ +  R     + K  GK++E++ + L RD  MS  EA
Sbjct: 128 ILSQPLGGLSGTSYEVKIQAKELSRNARSQVAFFAKFTGKSFEDMGEYLVRDTYMSPKEA 187

Query: 196 CDWGVVD 202
            +  ++D
Sbjct: 188 MEINLID 194


>gi|193875738|gb|ACF24505.1| chloroplast ATP-dependent Clp protease proteolytic subunit 3
           [Gymnochlora stellata]
          Length = 216

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 100/168 (59%), Gaps = 2/168 (1%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           +L + I+F+ G++ D +A  I   +++L      K ++L INSPGG VT+G+A+YD+   
Sbjct: 49  MLNKEILFLYGEVNDTIADTIIKNIIYLNNTTTTKNLTLMINSPGGSVTSGLAMYDSFNL 108

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           +   I T C+  AASMG+ LL +G KG R    + RI++HQP GG  G  + IE  A ++
Sbjct: 109 VDMHIGTTCIALAASMGAFLLGSGYKGKRNGFNHCRIMIHQPLGGIVGSFNQIESQANEL 168

Query: 159 VKIKRRLNEIYVKN-CGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           +  K  LN  Y+ N   +   +V +  DRD+ MS+ EA  +G++D VL
Sbjct: 169 LYYKLVLNS-YISNFSSQAPVKVMRDCDRDYFMSSREAAKYGIIDNVL 215


>gi|283050532|gb|ADB07680.1| ATP-dependent Clp protease proteolytic subunit [Phyllostachys
           aurea]
          Length = 180

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 61/153 (39%), Positives = 91/153 (59%), Gaps = 1/153 (0%)

Query: 59  ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLL 118
           I   +++L  E+   +I L+INSPGG + +GMAI+DTMQ + P I T C+G AASM S +
Sbjct: 11  ITGLMVYLSIEDGISDIFLFINSPGGWLISGMAIFDTMQTVTPDIYTICLGMAASMASFI 70

Query: 119 LSAGEKGMRFALPNARILLHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTY 177
           L  GE   R A P+ARI+LHQP S  +  +  +     +++ K++  +  +Y    GK +
Sbjct: 71  LLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFLLEVEELHKVREMITRVYALRTGKPF 130

Query: 178 EEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
             V + ++RD  MSA EA  +G+VD V    ID
Sbjct: 131 WVVSEDMERDVFMSADEAKAYGLVDIVGDEMID 163


>gi|271969828|ref|YP_003344024.1| endopeptidase Clp [Streptosporangium roseum DSM 43021]
 gi|270513003|gb|ACZ91281.1| Endopeptidase Clp [Streptosporangium roseum DSM 43021]
          Length = 208

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/182 (34%), Positives = 104/182 (57%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +  +L + R++ + G ++D   TL+  QL+ L  ++   +I+L+I+SPGG V + +AI D
Sbjct: 14  VRRQLYEGRVLVLDGPLDDDNGTLLATQLIALATQDASTDIALWIHSPGGSVPSMLAIRD 73

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            ++ I   +ST  MG A S G  LLS+G  G R ALP+AR+L+HQ S G  G A DIE  
Sbjct: 74  IIRLIPCDVSTLAMGIAYSAGQFLLSSGTPGKRRALPHARVLMHQGSAGIGGTAVDIELQ 133

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           A D+   +  +  +  ++ G+  E + +    D   +A EA D+G +D ++ S  +I  +
Sbjct: 134 ADDLRHTRDTVLGLIAEDTGQPVERIFEDSLHDRWYTAQEALDYGFIDAIVQSFDEIAPR 193

Query: 215 SK 216
            +
Sbjct: 194 DR 195


>gi|156101828|ref|XP_001616607.1| ATP-dependent Clp protease proteolytic subunit [Plasmodium vivax
           SaI-1]
 gi|148805481|gb|EDL46880.1| ATP-dependent Clp protease proteolytic subunit, putative
           [Plasmodium vivax]
          Length = 1104

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 65/182 (35%), Positives = 106/182 (58%), Gaps = 11/182 (6%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV--------- 85
           I S LL +RI+F++  +  H++  I +QLL+LE E+ +K I LYINS G +         
Sbjct: 65  IPSMLLSKRIIFLSSPVYPHISEQIISQLLYLEYESKRKPIHLYINSTGDLENNKIINLN 124

Query: 86  -VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
            +T  ++I D + +I   + T+C+G+A  +  +L S+G+KG RF+L N+   L+Q     
Sbjct: 125 GMTDVISIIDVIDYISSDVYTYCLGKAYGISCILASSGKKGFRFSLKNSSFCLNQSYSVI 184

Query: 145 S-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
              QA++IE   ++I+  KR++ EI   N GK    +E+ L+RD   SA EA  + +VD 
Sbjct: 185 PFNQATNIEIQNKEIMNTKRKVVEIIANNTGKEKSHIERILERDRYFSAPEAVQFNLVDH 244

Query: 204 VL 205
           +L
Sbjct: 245 IL 246


>gi|308807947|ref|XP_003081284.1| CLPP2_MYXXA ATP-dependent Clp protease proteolytic subunit 2 (ISS)
           [Ostreococcus tauri]
 gi|116059746|emb|CAL55453.1| CLPP2_MYXXA ATP-dependent Clp protease proteolytic subunit 2 (ISS)
           [Ostreococcus tauri]
          Length = 174

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 103/172 (59%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D++  L  ERIVF+  +I++++A   CA+LL LEAE+P+ EI +++N   G      AI 
Sbjct: 3   DVFGALASERIVFLGQRIDENVALDACARLLALEAEDPEGEIRIWVNCVAGTQYCVTAIL 62

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M+++  PIST  +G  A    +L++AG+KG R+   +AR++L QP GG +G + +++ 
Sbjct: 63  DMMEYVSCPISTVALGCVAGPPVMLVAAGDKGKRYGTQSARMVLSQPLGGLAGTSIEVKI 122

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            A+++ +  +       +  GK  +E+E  + RD  M   EA D+G++D  L
Sbjct: 123 QAKELNRNAKAQVGFIARYTGKDADELEAMMARDTYMGVQEAIDFGLLDHAL 174


>gi|194033275|ref|YP_002000447.1| ATP-dependent Clp protease proteolytic subunit [Oedogonium
           cardiacum]
 gi|156618980|gb|ABU88167.1| clp protease proteolytic subunit 2 [Oedogonium cardiacum]
 gi|186968892|gb|ACC97215.1| proteolytic subunit 2 of clp protease [Oedogonium cardiacum]
          Length = 560

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 53/146 (36%), Positives = 90/146 (61%), Gaps = 3/146 (2%)

Query: 63  LLFLEAE---NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
           L+F E++     QK + ++INS GG V +G+ +YD +QF+K    T C+G A S  SL+L
Sbjct: 366 LIFAESQERMQEQKRVFVFINSTGGSVHSGITVYDALQFVKAGTVTVCLGTAFSASSLVL 425

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
           + G  G R+      +++HQP GG  GQASD+     ++++++R+   IY     +++ E
Sbjct: 426 AGGNIGHRYVSEGGHVMIHQPEGGIQGQASDVVVDTHELMRVRRQAATIYALCSKRSFHE 485

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVL 205
           + K LDRD+ M+  EA D+G+ D+++
Sbjct: 486 ILKDLDRDYFMTPQEAIDYGLADEIV 511


>gi|260905351|ref|ZP_05913673.1| Endopeptidase Clp [Brevibacterium linens BL2]
          Length = 219

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 64/173 (36%), Positives = 95/173 (54%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           L   R V   G++ D     I ++L+ L AE+   +I L+INSPGG V    AI D ++ 
Sbjct: 40  LYAYRSVVFNGELRDENGMEIISRLILLSAEDSHSDIHLWINSPGGSVPMMHAIADVIET 99

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           +   + T   G AAS G  +L  G  G R ALP+ARILLHQ S G  G A+DIE  + D+
Sbjct: 100 LPNDVVTVAFGWAASAGQFVLMMGTPGKRLALPHARILLHQGSSGIGGAAADIELQSGDL 159

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
             ++  +     +  GKTYE V +   RD   +  +A D+G++D+++ S  D+
Sbjct: 160 RTVRDTVLHRIAEATGKTYERVFEDSLRDRWFTVEQALDYGLIDRIVESPADL 212


>gi|290489472|gb|ADD31120.1| clp protease proteolytic subunit protein [Plumbago auriculata]
          Length = 194

 Score =  118 bits (296), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 107/188 (56%), Gaps = 2/188 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP ++ + N      D+Y+RL + R +F+  ++   +   +   +++L  E+  KE+ L+
Sbjct: 8   VPFLLPE-NEDATWVDVYNRLYRSRFLFLGEELNTEIGNFLMGLIIYLGIEDETKELFLF 66

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           +N PGG V  G+ + D M+ + P ++T C+G AASMGS +L AGE   R A P+AR+++H
Sbjct: 67  LNCPGGWVLPGLGVVDAMEIVTPDVNTICIGIAASMGSFILVAGEITKRAAFPHARVMIH 126

Query: 139 QPSGGFSGQASDI-ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP   F    S I     ++I+ ++  +   Y++  G+    + + L+RD  +SA+EA  
Sbjct: 127 QPKSAFYEDQSGICMMEIEEIIILRENITNFYIQRTGQPLWVIMQDLERDAFLSATEAQA 186

Query: 198 WGVVDKVL 205
             +VD +L
Sbjct: 187 HRIVDIIL 194


>gi|255030852|ref|ZP_05302803.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes LO28]
          Length = 191

 Score =  118 bits (295), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 62/162 (38%), Positives = 106/162 (65%), Gaps = 1/162 (0%)

Query: 55  MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASM 114
           +A  +  QLL LE+ +    I+++INS GG V AG  I+D ++FIKP +     G  AS 
Sbjct: 1   LAEDVSKQLLLLESIS-NDPITIFINSQGGHVEAGDTIHDMIKFIKPTVKVVGTGWVASA 59

Query: 115 GSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCG 174
           G  +  A EK  RF+LPN R ++HQP+GG  GQ+++IE  A++I++++ R+N +  +  G
Sbjct: 60  GITIYLAAEKENRFSLPNTRYMIHQPAGGVQGQSTEIEIEAKEIIRMRERINRLIAEATG 119

Query: 175 KTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           ++YE++ K  DR+  +S +EA D+G+V++++ +R  ++ K K
Sbjct: 120 QSYEQISKDTDRNFWLSVNEAKDYGIVNEIIENRDGLKIKPK 161


>gi|124809228|ref|XP_001348522.1| ATP-dependent Clp protease proteolytic subunit, putative
           [Plasmodium falciparum 3D7]
 gi|23497417|gb|AAN36961.1|AE014821_48 ATP-dependent Clp protease proteolytic subunit, putative
           [Plasmodium falciparum 3D7]
          Length = 244

 Score =  117 bits (294), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 110/197 (55%), Gaps = 11/197 (5%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P+        + + +I S LL +RI+F++  I  H++  I +QLL+LE E+ +K I LYI
Sbjct: 45  PLYYSYNEHHKYNINIPSLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYI 104

Query: 80  NSPGGV----------VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NS G +          +T  ++I D + +I   + T+C+G+A  +  +L S+G+KG RF+
Sbjct: 105 NSTGDIDNNKIINLNGITDVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFS 164

Query: 130 LPNARILLHQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           L N+   L+Q        QA++IE   ++I+  K+++ EI  KN  K    +   L+RD 
Sbjct: 165 LKNSSFCLNQSYSIIPFNQATNIEIQNKEIMNTKKKVIEIISKNTEKDTNVISNVLERDK 224

Query: 189 IMSASEACDWGVVDKVL 205
             +A EA D+ ++D +L
Sbjct: 225 YFNADEAVDFKLIDHIL 241


>gi|269469208|gb|EEZ80742.1| Protease subunit of ATP-dependent Clp protease [uncultured SUP05
           cluster bacterium]
          Length = 95

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 53/95 (55%), Positives = 73/95 (76%)

Query: 114 MGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC 173
           MG+LLL+AG KG RFALP+AR ++HQP GGFSGQASDI+ HA++I+K++ RLN I   + 
Sbjct: 1   MGALLLTAGAKGKRFALPHARCMIHQPLGGFSGQASDIDIHAKEILKVRERLNLILKNHT 60

Query: 174 GKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           G+  + ++K  DRD+ MSA EA  +G++DKVL  R
Sbjct: 61  GQNLKTIQKDTDRDNFMSADEASQYGLIDKVLTKR 95


>gi|68071845|ref|XP_677836.1| ATP-dependent Clp protease proteolytic subunit, [Plasmodium berghei
           strain ANKA]
 gi|56498101|emb|CAI04312.1| ATP-dependent Clp protease proteolytic subunit, putative
           [Plasmodium berghei]
          Length = 239

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 62/179 (34%), Positives = 105/179 (58%), Gaps = 10/179 (5%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV----------V 86
           S LL +RI+F++  I  H++  I +QLL+LE E+ +K I LYINS G +          +
Sbjct: 58  SLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDLENNKIVNLNGI 117

Query: 87  TAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG 146
           T  ++I D + +I   + T+C+G+A  +  +L S+G+KG RF+L N+   L Q       
Sbjct: 118 TDVISIIDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLKQSYIIPFN 177

Query: 147 QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           QA++IE   ++I+  K+++ +I  KN  K    + + LDRD   +A+EA D+ ++D +L
Sbjct: 178 QATNIEIQNKEIMNTKKKVIDIIAKNTEKDNNIISEILDRDRYFNANEASDFNLIDHIL 236


>gi|63055020|gb|AAY29048.1| predicted ATP-dependent Clp protease proteolytic subunit 2
           [Bifidobacterium animalis subsp. lactis DSM 10140]
          Length = 160

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 60/120 (50%), Positives = 87/120 (72%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP   E+T  G ++ + Y+RL  +RI+F+  Q++D  A  I AQLL LE+ +P +++ +
Sbjct: 41  VVPEFTERTPYGMKTQNPYTRLFDDRIIFLGVQVDDTSADDIMAQLLVLESMDPNRDVMM 100

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  +++L+AG KG R  LPNAR+L+
Sbjct: 101 YINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAIILAAGTKGKRLMLPNARVLI 160


>gi|332040877|gb|EGI77248.1| endopeptidase Clp [Hylemonella gracilis ATCC 19624]
          Length = 205

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 63/179 (35%), Positives = 101/179 (56%), Gaps = 7/179 (3%)

Query: 38  RLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97
           +  K R + V G + D MA  +  +L+ L+A+  Q  I L ++SPGG + +G AI+D ++
Sbjct: 32  KAFKTRTLLVFGTVTDAMAADVTRRLIALDADGDQP-IHLLVSSPGGHLESGDAIHDIVR 90

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
           FI  P++    G   S  + L  A  +  R+ LPN R L+HQPSGG  G A++I   A++
Sbjct: 91  FIAAPVNMIGTGWVGSAATHLYLAVPRARRYCLPNTRFLIHQPSGGAGGPATNIAIQARE 150

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           +VK + R+     +  GK+ E V   ++ D  +SA EA D+G+V ++      IE KS+
Sbjct: 151 MVKARERIAATIARETGKSLEAVLTDIEHDRWLSAEEAVDYGLVSRI------IERKSE 203


>gi|219118446|ref|XP_002179995.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408252|gb|EEC48186.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 309

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/177 (34%), Positives = 104/177 (58%), Gaps = 4/177 (2%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           DI + + ++R +F++  I++  A  + + +L+L  E+P+  IS+Y N PG ++   +A+Y
Sbjct: 73  DIEAAMYRDRTLFISTFIDEETANSLISIMLYLRNESPKDPISMYFNVPGALLRPSLALY 132

Query: 94  DTMQFIKPP--ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG--FSGQAS 149
           D +Q  K    I T  +G  A MG+ L SAG KG R A+PN+R LL +      F GQA+
Sbjct: 133 DLIQQTKQKCEIETVNLGLCAGMGAFLCSAGTKGKRNAMPNSRFLLQRTGMDEVFRGQAT 192

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           DI    +++ K   R+ E   +  G+  E +++ L RD  +S+ EA  +G++D+VL+
Sbjct: 193 DIALEVRNVKKWNDRMEEELSQMTGQPLERIQQDLKRDFYLSSDEAVQYGLIDRVLL 249


>gi|290489456|gb|ADD31112.1| clp protease proteolytic subunit protein [Bulnesia arborea]
          Length = 196

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 97/172 (56%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL ++R++F+  ++ D ++  +   +++L  E+      L+INSPGG++  G+ I 
Sbjct: 22  DLYNRLYRQRLLFLGQEVNDEISNQLIGLMVYLSLEDSTLNQYLFINSPGGLILPGIGIV 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
            TM  + P + T CMG A S G  +L  GE   R A P+AR++LHQP+  F      D+ 
Sbjct: 82  STMSTLVPEVQTICMGSAISTGCFILVGGEITKRMAFPHARVMLHQPASSFLEAPMRDMI 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
              ++I+ +   +   YV   GK    + + + +D  MSA EA ++G+VD +
Sbjct: 142 LEGEEILNLYEIVTTTYVIRTGKPLWVIVEDMKKDVFMSAEEAKNYGLVDLI 193


>gi|82594064|ref|XP_725269.1| Clp protease [Plasmodium yoelii yoelii str. 17XNL]
 gi|23480207|gb|EAA16834.1| Clp protease [Plasmodium yoelii yoelii]
          Length = 240

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 110/187 (58%), Gaps = 11/187 (5%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV---- 85
           +++ +I S LL +RI+F++  I  H++  I +QLL+LE E+ +K I LYINS G +    
Sbjct: 51  KQNINIPSLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDLENNK 110

Query: 86  ------VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
                 +T  ++I D + +I   + T+C+G+A  +  +L S+G+KG RF+L N+   L Q
Sbjct: 111 IVNLNGITDVISIIDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLKQ 170

Query: 140 PSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
                   QA++IE   ++I+  K+++ +I  KN  K    + + LDRD   +A+EA D+
Sbjct: 171 SYSIIPFNQATNIEIQNKEIMNTKKKVIDIIAKNTEKDNNIISEILDRDRYFNANEASDF 230

Query: 199 GVVDKVL 205
            ++D +L
Sbjct: 231 NLIDHIL 237


>gi|70942851|ref|XP_741542.1| ATP-dependent Clp protease proteolytic subunit, [Plasmodium
           chabaudi chabaudi]
 gi|56519988|emb|CAH74558.1| ATP-dependent Clp protease proteolytic subunit, putative
           [Plasmodium chabaudi chabaudi]
          Length = 202

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 104/180 (57%), Gaps = 11/180 (6%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV----------V 86
           S LL +RI+F++  I  H++  I +QLL+LE E+ +K I LYINS G +          +
Sbjct: 20  SLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDLENNKIVNLNGI 79

Query: 87  TAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS- 145
           T  ++I D + +I   + T+C+G+A  +  +L S+G+KG RF+L N+   L Q       
Sbjct: 80  TDVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLKQSYSIIPF 139

Query: 146 GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            QA++IE   ++I+  K+++ +I  KN  K    + + LDRD   +A EA D+ ++D +L
Sbjct: 140 NQATNIEIQNKEIMNTKKKVIDIIAKNTEKDSNIISEILDRDRYFNAKEASDFNLIDHIL 199


>gi|218281682|ref|ZP_03488076.1| hypothetical protein EUBIFOR_00643 [Eubacterium biforme DSM 3989]
 gi|218217248|gb|EEC90786.1| hypothetical protein EUBIFOR_00643 [Eubacterium biforme DSM 3989]
          Length = 181

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 102/163 (62%), Gaps = 1/163 (0%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           RI+ + G++   M+  +  +L  L A+N    I++ I+SPGG +  GM I D M+ I+ P
Sbjct: 19  RIINLWGEVTPEMSLYVVTRLQELNAKN-HDPITIQIHSPGGSLRDGMIIIDMMEAIQSP 77

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIK 162
           + T  +G A SM SL+L+AGEKG R AL ++ I++HQ S    G+ SDI+  A+ +V+ +
Sbjct: 78  VYTMALGNAMSMASLILAAGEKGHRKALKHSTIMVHQGSTICEGKFSDIKSGAKRMVETE 137

Query: 163 RRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
             + E+YVK  GKT  ++   L  D  +S+ +A ++G++D+V+
Sbjct: 138 EMIEELYVKYTGKTKRKIHADLQMDLFLSSDKAVEYGLIDEVV 180


>gi|115435898|ref|NP_001042707.1| Os01g0271400 [Oryza sativa Japonica Group]
 gi|113532238|dbj|BAF04621.1| Os01g0271400 [Oryza sativa Japonica Group]
          Length = 298

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/201 (37%), Positives = 118/201 (58%), Gaps = 9/201 (4%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
           DV   +VP +   T   +   D+ S L K RIV++   +   +  L+ A+ L+L+ ++ +
Sbjct: 78  DVVAMVVPFL-RGTAWQQPPPDLASFLYKNRIVYLGMCLVPSVTELMLAEFLYLQYDDAE 136

Query: 73  KEISLYINSPG--------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           K I LYINS G        G  T   AIYD M+++K PI T C+G A    +LLL+AG K
Sbjct: 137 KPIYLYINSTGTTKNGEKLGYETEAFAIYDAMRYVKVPIFTLCVGNAWGEAALLLAAGAK 196

Query: 125 GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
           G R ALP++ I++ QP G F GQA+D++   ++I  +K  + ++  ++ GK+ EE+ + +
Sbjct: 197 GNRAALPSSTIMIKQPIGRFQGQATDVDIARKEIRNVKIEMIKLLSRHIGKSVEEIAQDI 256

Query: 185 DRDHIMSASEACDWGVVDKVL 205
            R    S SEA D+G++DKVL
Sbjct: 257 KRPKYFSPSEAVDYGIIDKVL 277


>gi|63055006|gb|AAY29041.1| predicted ATP-dependent Clp protease proteolytic subunit 2
           [Bifidobacterium dentium]
          Length = 160

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 61/120 (50%), Positives = 88/120 (73%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y+RL ++RI+F+  Q++D  A  I AQLL LE+++P +++ +
Sbjct: 41  VLPQFEEKTPYGFKRQDPYTRLFEDRIIFMGVQVDDTSADDIMAQLLVLESQDPNRDVMM 100

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL+AG KG R  LPNAR+L+
Sbjct: 101 YINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLAAGAKGKRLMLPNARVLI 160


>gi|63055016|gb|AAY29046.1| predicted ATP-dependent Clp protease proteolytic subunit 2
           [Bifidobacterium adolescentis]
          Length = 160

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 61/120 (50%), Positives = 88/120 (73%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y+RL ++RI+F+  Q++D  A  I AQLL LE+++P +++ +
Sbjct: 41  VLPQFEEKTPYGYKRQDPYTRLFEDRIIFMGVQVDDTSADDIMAQLLVLESQDPNRDVMM 100

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL+AG KG R  LPNAR+L+
Sbjct: 101 YINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLAAGAKGKRLMLPNARVLI 160


>gi|54023138|ref|YP_117380.1| putative Clp protease proteolytic subunit [Nocardia farcinica IFM
           10152]
 gi|54014646|dbj|BAD56016.1| putative Clp protease proteolytic subunit [Nocardia farcinica IFM
           10152]
          Length = 201

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 67/170 (39%), Positives = 102/170 (60%)

Query: 38  RLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97
           +LL  RI+ + G ++D   TL+  QLL L AEN +  ISL+I+SPGG V A +AI D M+
Sbjct: 17  QLLSRRILVLDGPLDDDNGTLLATQLLTLAAENDEAPISLWIHSPGGSVPAMLAIRDVMR 76

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
            +   +ST  +G A S G  LLSAG +G RFALP+AR+L+HQ S G  G A D+E  A D
Sbjct: 77  LVPCEVSTLALGLACSAGQFLLSAGSRGKRFALPHARVLMHQGSAGIGGTAVDVEVQADD 136

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           +      +  +   + G+ Y+ + +    D   +A++A ++G +D ++ S
Sbjct: 137 LRHTVETVLGLIAADTGQPYDRIYEDSLHDRWFTAAQAKEYGFIDHIVDS 186


>gi|331003376|ref|ZP_08326878.1| Clp protease [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330412573|gb|EGG91959.1| Clp protease [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 201

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 109/183 (59%), Gaps = 5/183 (2%)

Query: 25  QTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG 84
           +TN G     + ++   +R + ++G+I D  A     ++L L  E+ +  I++ INSPGG
Sbjct: 8   KTNNGITQVPLETKFFGKRCISISGEINDESAIDFTDKILELNIESCEP-ITILINSPGG 66

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP--SG 142
            + +G+ +YD +   K PI   C G+A SMG++L +   K  R+ LPN+ ++LHQP   G
Sbjct: 67  EINSGLLMYDAIVGSKAPIRMICRGKAYSMGAVLFACASK--RYMLPNSELMLHQPMLGG 124

Query: 143 GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
             SG AS I+  +  +++ K++LN +  ++ GK+ EE+++  + DH  S +E+ ++ + D
Sbjct: 125 RVSGNASSIKSISDSMLETKKKLNSLLARHTGKSEEEIDEATNFDHYFSPTESIEFNLCD 184

Query: 203 KVL 205
           +++
Sbjct: 185 EII 187


>gi|166201966|gb|ABY84438.1| ATP-dependent protease proteolytic subunit [Oenothera fruticosa]
          Length = 295

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 65/188 (34%), Positives = 112/188 (59%), Gaps = 5/188 (2%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+++ L ++RI+F+  +I+  +   I   +++L  +NP  ++  +INSPGG+   G  IY
Sbjct: 22  DLFNILYRKRILFLGQEIDVELGNHIVGLMVYLGIDNPFLDMIFFINSPGGLAIPGFGIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQA-SDIE 152
           D MQ+IKP + T  +G  ASM SL+LS G KG R    N RI++HQP+  +       I 
Sbjct: 82  DIMQYIKPNVYTIGLGVVASMASLILSGGGKGKRIGGKNMRIMIHQPAMSYRKDPLRTIL 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV----LMSR 208
           R A+ +  ++ ++ + Y+K  GK    + K L+R+  M+++EA  +G+VD +    L++R
Sbjct: 142 REAEGMSCLRTQVLKCYIKKTGKDCGVINKLLERNTFMTSTEALGFGIVDSIADGRLLTR 201

Query: 209 IDIEEKSK 216
           I+ E + K
Sbjct: 202 IEKERRMK 209


>gi|254425265|ref|ZP_05038983.1| Clp protease [Synechococcus sp. PCC 7335]
 gi|196192754|gb|EDX87718.1| Clp protease [Synechococcus sp. PCC 7335]
          Length = 218

 Score =  115 bits (287), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 68/194 (35%), Positives = 119/194 (61%), Gaps = 17/194 (8%)

Query: 29  GERSY---DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG-- 83
           G RS+   +I++R+ +ERI+F+   + D +A  + + LL+L++E+  K I LYINS G  
Sbjct: 9   GSRSWQWVNIFTRMSQERILFLNSPLTDGVANSLVSALLYLDSEDQSKPIYLYINSLGDP 68

Query: 84  ----------GVVT--AGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
                     G+++  AG+A+YDT+  IK  + T CMG A  M ++LL+AG KG R ALP
Sbjct: 69  VMSGQADESAGMISIRAGLAVYDTIAHIKSEVLTICMGTAYGMAAVLLAAGAKGKRAALP 128

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           +  I L  P+    GQA+DI   A +++  ++ + +I   + G++ E++ K ++R   +S
Sbjct: 129 HTSIALTHPTTLTRGQATDINLEATEVLAKRKLIQQILANSTGQSAEKIAKDMERMFYLS 188

Query: 192 ASEACDWGVVDKVL 205
            +EA ++G++D+V+
Sbjct: 189 PTEAKEYGLIDRVI 202


>gi|242052591|ref|XP_002455441.1| hypothetical protein SORBIDRAFT_03g010870 [Sorghum bicolor]
 gi|241927416|gb|EES00561.1| hypothetical protein SORBIDRAFT_03g010870 [Sorghum bicolor]
          Length = 291

 Score =  114 bits (286), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 73/207 (35%), Positives = 121/207 (58%), Gaps = 9/207 (4%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           + + DV   +VP +   T   +   D+ S L K RIV++   +   +  L+ A+ L+L+ 
Sbjct: 67  RGARDVVAMVVPFL-RGTAWEQPPPDLASFLYKNRIVYLGMCLVPSVTELMLAEFLYLQY 125

Query: 69  ENPQKEISLYINSPG--------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           ++ +K I LYINS G        G  T  +A+YD M+++K PI T C+G A    +LLL+
Sbjct: 126 DDAEKPIYLYINSTGTTKNGEKLGYETEALAVYDAMRYVKVPIFTLCVGNAWGEAALLLA 185

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG R ALP++ I++ QP G F GQA+D++   ++I  +K  + ++  ++ GK  EE+
Sbjct: 186 AGAKGNRAALPSSTIMIKQPIGRFQGQATDVDIARKEIRNVKIEMVKLLARHIGKPIEEI 245

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMS 207
            + + R    S SEA D+G++DKV+ +
Sbjct: 246 ARDIRRPKYFSPSEAVDYGIIDKVIYN 272


>gi|63055018|gb|AAY29047.1| predicted ATP-dependent Clp protease proteolytic subunit 2
           [Bifidobacterium cuniculi]
          Length = 152

 Score =  114 bits (286), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 62/135 (45%), Positives = 91/135 (67%), Gaps = 2/135 (1%)

Query: 3   FEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQ 62
           F   A +  +D ++  VP   E+T  G +  + Y+RL  +RI+F+  Q++D  A  I AQ
Sbjct: 20  FRAAADRMPQDRYI--VPEFEEKTPYGYKRQNPYTRLFDDRIIFMGVQVDDTTADDIMAQ 77

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           LL LE+ +P +++ +YINSPGG +TA  AIYDTM +I+P + T C+GQAAS  ++LL+AG
Sbjct: 78  LLVLESLDPNRDVMMYINSPGGSMTAMTAIYDTMNYIQPDVQTVCLGQAASAAAILLAAG 137

Query: 123 EKGMRFALPNARILL 137
            KG R  LPNAR+L+
Sbjct: 138 TKGKRLILPNARVLI 152


>gi|326495296|dbj|BAJ85744.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 282

 Score =  114 bits (285), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 73/205 (35%), Positives = 119/205 (58%), Gaps = 9/205 (4%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           + + DV   ++P +   T   +   D+ S L K RIV++   +   +  L+ A+ L+L+ 
Sbjct: 59  RGARDVVAMVIPFL-RGTAFEQPPPDLASFLYKNRIVYLGMCLVPSVTELMLAEFLYLQY 117

Query: 69  ENPQKEISLYINSPG--------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           E+ +K I +YINS G        G  T   A+YD M+++K PI T C+G A    +LLL+
Sbjct: 118 EDAEKPIYMYINSTGTTKNGEKLGYETEAFAVYDAMRYVKIPIFTLCIGNAWGEAALLLA 177

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG R ALP++ I++ QP G F GQA+D++   ++I  +K  + ++  ++ GK  EE+
Sbjct: 178 AGAKGNRAALPSSTIMMKQPIGRFQGQATDVDIARKEIRNVKIEMVKLLSRHIGKPMEEI 237

Query: 181 EKTLDRDHIMSASEACDWGVVDKVL 205
            + + R    S SEA D+G++DKVL
Sbjct: 238 ARDIRRPKYFSPSEAVDYGIIDKVL 262


>gi|166201981|gb|ABY84447.1| ATP-dependent protease proteolytic subunit [Oenothera flava subsp.
           taraxacoides]
          Length = 236

 Score =  114 bits (285), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 99/164 (60%), Gaps = 2/164 (1%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+ L + R VF+  +++  ++  I   ++FL  E+  K++  +INSPGG+   G+ IY
Sbjct: 22  DLYNGLYRNRSVFLGQEVDYEISNHIAGLMIFLSIEDANKDLFFFINSPGGLAIPGLGIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQ--ASDI 151
           DTMQF+KP + T  +G  A MGS LL  GE   R A PN R+++HQP+  ++ +  A+++
Sbjct: 82  DTMQFVKPHVYTLGLGLXAXMGSFLLVGGEITKRLASPNVRVMIHQPASSYTAKDPAAEV 141

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
              ++++  I+  +  +YV+  G     +   L+R+  MSA+EA
Sbjct: 142 FEESEEVEAIREMVLRVYVQRTGNPPGVINDHLERNIFMSATEA 185


>gi|307109710|gb|EFN57947.1| hypothetical protein CHLNCDRAFT_11056 [Chlorella variabilis]
          Length = 200

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 108/181 (59%), Gaps = 9/181 (4%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG--------GV 85
           D+ S L KERIV+V   +   +  L+ A++L+L+ +NP + I +YINS G        G 
Sbjct: 17  DLPSYLFKERIVYVGMSLVPAVTELVLAEMLYLQYDNPTRPIYMYINSTGVIKGSGKLGY 76

Query: 86  VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS 145
            +   AIYDTM++IKPP++T C+G A    ++LL+AGE G R ALP+  I++ QP   ++
Sbjct: 77  ESEAFAIYDTMRYIKPPVATVCVGSAFGEAAMLLAAGEAGRRAALPSTSIMIRQPMQRYT 136

Query: 146 G-QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             QASDI+ +  ++ K    +  +  K+ G   E+V + + R    +  EA ++G++D+V
Sbjct: 137 QMQASDIDIYRNELRKTNAEVVRLLSKHTGHGEEQVARDISRPKYFNPYEAIEYGIIDRV 196

Query: 205 L 205
           L
Sbjct: 197 L 197


>gi|194247899|dbj|BAG55404.1| ATP-dependent Clp protease-like protein [chlorophyte sp. MBIC11204]
          Length = 131

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 51/77 (66%), Positives = 65/77 (84%)

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           I+ PIST C+GQAASM SLLL+AGEKG R +LPN+RI+LHQPSGGF GQASDI  HA++I
Sbjct: 1   IRNPISTLCVGQAASMASLLLAAGEKGQRRSLPNSRIMLHQPSGGFQGQASDIRIHAEEI 60

Query: 159 VKIKRRLNEIYVKNCGK 175
            ++ +RLN+IY K+ G+
Sbjct: 61  TRLSKRLNQIYAKHTGQ 77


>gi|297849204|ref|XP_002892483.1| ClpP protease complex subunit ClpR3 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338325|gb|EFH68742.1| ClpP protease complex subunit ClpR3 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 332

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/183 (34%), Positives = 106/183 (57%), Gaps = 11/183 (6%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------G 84
           D+ S LL  RIV++   +   +  L+ A+L++L+  +P++ I +YINS G         G
Sbjct: 121 DLPSMLLDGRIVYIGMPLVPAVTELVVAELMYLQWLDPKEPIYIYINSTGTTRDDGETVG 180

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
           + + G AIYD++  +K  + T C+G A     LLLSAG KG RF +P+A+ ++ QP    
Sbjct: 181 MESEGFAIYDSLMQLKNEVHTVCVGAAIGQACLLLSAGTKGNRFMMPHAKAMIQQPRVPS 240

Query: 145 SG--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
           SG   ASD+   A++++  +  L E+  K+ G + E V   + R + M A +A ++GV+D
Sbjct: 241 SGLMPASDVLIRAKEVITNRDILVELLAKHTGNSVETVANVMRRPYYMDAPKAKEFGVID 300

Query: 203 KVL 205
           K+L
Sbjct: 301 KIL 303


>gi|294460153|gb|ADE75659.1| unknown [Picea sitchensis]
          Length = 254

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/126 (45%), Positives = 84/126 (66%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+ S LL+ R+VF+   I   +A  + +QL+ L A +P  +I +Y+N PGG + + +AIY
Sbjct: 123 DLMSVLLRSRVVFIGQPINAQVAQRVISQLMTLAAIDPDADILMYLNCPGGSIYSILAIY 182

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M +IKP + T C G AAS  +LLL+ GEKGMR+A+PN+RI++HQP GG  G   D+ R
Sbjct: 183 DCMSWIKPKVGTVCFGVAASQAALLLAGGEKGMRYAMPNSRIMIHQPQGGCGGNIEDVWR 242

Query: 154 HAQDIV 159
              ++V
Sbjct: 243 QVNELV 248


>gi|226531596|ref|NP_001140352.1| hypothetical protein LOC100272400 [Zea mays]
 gi|194699128|gb|ACF83648.1| unknown [Zea mays]
          Length = 289

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/180 (37%), Positives = 110/180 (61%), Gaps = 8/180 (4%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG--------GV 85
           D+ S L K RIV++   +   +  L+ A+ L+L+ ++ +K I +YINS G        G 
Sbjct: 89  DLASFLYKNRIVYLGMCLVPSVTELMLAEFLYLQYDDAEKPIYMYINSTGTTKNGEKLGY 148

Query: 86  VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS 145
            T  +A+YD M+++K PI T C+G A    +LLL+AG KG R ALP++ I++ QP G F 
Sbjct: 149 ETEALAVYDAMRYVKVPIFTLCVGNAWGEAALLLAAGAKGNRAALPSSTIMIKQPIGRFQ 208

Query: 146 GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           GQA+D++   ++I  +K  + ++  ++ GK  EE+ + + R    S SEA D+G++DKV+
Sbjct: 209 GQATDVDIARKEIRNVKIEMVKLLARHIGKPMEEIARDIRRPKYFSPSEAVDYGIIDKVI 268


>gi|326519849|dbj|BAK03849.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 228

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 85/135 (62%), Gaps = 6/135 (4%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           S D+ + LL  RI+F+   +   +A  + +QL+ L A + + ++ +Y+N PGG + + +A
Sbjct: 83  SLDLATVLLGNRIIFIGQYVNSQVAQRVISQLVSLSAIDEEGDVLIYLNCPGGSLYSILA 142

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYD M +I P + T C G  AS  +++L+ GEKGMR+A+PNAR+++HQP GG  G   ++
Sbjct: 143 IYDCMSWITPKVGTVCFGVVASQAAIILAGGEKGMRYAMPNARVMIHQPQGGSEGNTEEV 202

Query: 152 ER------HAQDIVK 160
            R      +A+D+ K
Sbjct: 203 RRQVGETIYARDLTK 217


>gi|212913328|gb|ACJ38659.1| caseinolytic ATP-dependent protease [Shuteria involucrata var.
           vestita]
          Length = 159

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 51/144 (35%), Positives = 88/144 (61%), Gaps = 1/144 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+RL ++R++F+  +++  ++  I   + FL  E+P +++ L+IN PGG V +G+A+Y
Sbjct: 10  DLYNRLYRQRLLFLGKELDAELSNQITGLMAFLSIEDPSEDLFLFINCPGGGVMSGIAVY 69

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           D M  +   + T CM  AASMGS +L  GE   R A P+ARI++HQP+  F  G    + 
Sbjct: 70  DMMHHVDADVQTVCMALAASMGSFILLGGEITERLAFPHARIMIHQPASSFYKGHMDAVF 129

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKT 176
               +I++I+  +   Y++  GK+
Sbjct: 130 MEFGEILRIRESIIRTYMQRTGKS 153


>gi|228991606|ref|ZP_04151550.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           pseudomycoides DSM 12442]
 gi|228768175|gb|EEM16794.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           pseudomycoides DSM 12442]
          Length = 111

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 54/108 (50%), Positives = 74/108 (68%)

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
            IKP + T CMG AAS G+LLL AG KG RFALPN+ I++HQP GG  GQA++IE  A+ 
Sbjct: 1   MIKPDVQTLCMGFAASFGALLLLAGAKGKRFALPNSEIMIHQPLGGVKGQATEIEITAKR 60

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           I+K+K  +N+I     G+  E+V    +RD+ M+A EA  +G+VD V+
Sbjct: 61  ILKLKHDINKIISDRTGQPIEKVALDTERDYFMTAEEAKIYGIVDAVI 108


>gi|229199266|ref|ZP_04325935.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           m1293]
 gi|228584210|gb|EEK42359.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           m1293]
          Length = 106

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 51/98 (52%), Positives = 70/98 (71%)

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
           MAIYDTMQFIKP +ST C+G AASMG+ LL+AGEKG R+ALPN+ +++HQP GG  GQA+
Sbjct: 1   MAIYDTMQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQAT 60

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           +IE  A+ I+ ++ +LN+I     G+  E   +   R 
Sbjct: 61  EIEIAAKRILFLREKLNQILADRTGQPLEATTRHRPRQ 98


>gi|148908273|gb|ABR17251.1| unknown [Picea sitchensis]
          Length = 158

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 55/146 (37%), Positives = 87/146 (59%), Gaps = 8/146 (5%)

Query: 77  LYINSPG--------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           +YINS G        G  T   A+YDTM+++KPPI T C+G A    SLLL+AG KG R 
Sbjct: 1   MYINSTGTTKDGEKLGYETEAFAVYDTMRYVKPPIFTLCIGNAWGEASLLLAAGAKGNRA 60

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LP++ I++ QP     GQA+DI+   +++  +K  L  +Y ++ G   E++E+ + R  
Sbjct: 61  SLPSSTIMIKQPIAQVRGQATDIDLARKEVRNVKNELVALYARHTGHPKEKIEQDIRRPK 120

Query: 189 IMSASEACDWGVVDKVLMSRIDIEEK 214
             S  EA ++G++DKV+ S    E++
Sbjct: 121 YFSPQEAIEYGIIDKVIYSDKGTEDR 146


>gi|302817400|ref|XP_002990376.1| hypothetical protein SELMODRAFT_131372 [Selaginella moellendorffii]
 gi|302825342|ref|XP_002994294.1| hypothetical protein SELMODRAFT_138455 [Selaginella moellendorffii]
 gi|300137825|gb|EFJ04638.1| hypothetical protein SELMODRAFT_138455 [Selaginella moellendorffii]
 gi|300141938|gb|EFJ08645.1| hypothetical protein SELMODRAFT_131372 [Selaginella moellendorffii]
          Length = 235

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 65/174 (37%), Positives = 98/174 (56%), Gaps = 11/174 (6%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------GVVTAGMAIY 93
           RIV+V   +   +  L+ A+LL+L+  +P   I +YINS G         G+ T G AI+
Sbjct: 23  RIVYVGMPLVPAVTELVIAELLYLQYSDPTLPIYMYINSTGTSRADGETVGMETEGFAIH 82

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           DTMQ +K  I T  +G A     LLL+AG KG R+ LP+A  ++ QP     GQ   I+ 
Sbjct: 83  DTMQLVKNEIHTVGVGAAIGQACLLLAAGTKGKRYMLPHATAMIQQPRMPSMGQMPAIDL 142

Query: 154 H--AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           H  A++++  +  L E+  ++ G   E+V K + R + MS  +A D+GVVDK+L
Sbjct: 143 HLRAKEVIHNRDTLVELLAEHTGNPVEKVAKVMRRPYYMSPKKAMDFGVVDKIL 196


>gi|302795281|ref|XP_002979404.1| hypothetical protein SELMODRAFT_153292 [Selaginella moellendorffii]
 gi|300153172|gb|EFJ19812.1| hypothetical protein SELMODRAFT_153292 [Selaginella moellendorffii]
          Length = 243

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 65/174 (37%), Positives = 98/174 (56%), Gaps = 11/174 (6%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------GVVTAGMAIY 93
           RIV+V   +   +  L+ A+LL+L+  +P   I +YINS G         G+ T G AI+
Sbjct: 31  RIVYVGMPLVPAVTELVIAELLYLQYSDPTLPIYMYINSTGTSRADGETVGMETEGFAIH 90

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           DTMQ +K  I T  +G A     LLL+AG KG R+ LP+A  ++ QP     GQ   I+ 
Sbjct: 91  DTMQLVKNEIHTVGVGAAIGQACLLLAAGTKGKRYMLPHATAMIQQPRMPSMGQMPAIDL 150

Query: 154 H--AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           H  A++++  +  L E+  ++ G   E+V K + R + MS  +A D+GVVDK+L
Sbjct: 151 HLRAKEVIHNRDTLVELLAEHTGNPVEKVAKVMRRPYYMSPKKAMDFGVVDKIL 204


>gi|18390982|ref|NP_563836.1| ATP-dependent Clp protease proteolytic subunit, putative
           [Arabidopsis thaliana]
 gi|79317437|ref|NP_001031008.1| ATP-dependent Clp protease proteolytic subunit, putative
           [Arabidopsis thaliana]
 gi|75301131|sp|Q8L770|CLPR3_ARATH RecName: Full=ATP-dependent Clp protease proteolytic
           subunit-related protein 3, chloroplastic; Short=ClpR3;
           AltName: Full=nClpP8; Flags: Precursor
 gi|22531207|gb|AAM97107.1| ATP-dependent Clp protease proteolytic subunit (ClpR3), putative
           [Arabidopsis thaliana]
 gi|25083963|gb|AAN72143.1| ATP-dependent Clp protease proteolytic subunit (ClpR3), putative
           [Arabidopsis thaliana]
 gi|51968388|dbj|BAD42886.1| ClpP protease complex subunit ClpR3 [Arabidopsis thaliana]
 gi|51968776|dbj|BAD43080.1| ClpP protease complex subunit ClpR3 [Arabidopsis thaliana]
 gi|51968816|dbj|BAD43100.1| ClpP protease complex subunit ClpR3 [Arabidopsis thaliana]
 gi|51969676|dbj|BAD43530.1| ClpP protease complex subunit ClpR3 [Arabidopsis thaliana]
 gi|51969856|dbj|BAD43620.1| ClpP protease complex subunit ClpR3 [Arabidopsis thaliana]
 gi|51969858|dbj|BAD43621.1| ClpP protease complex subunit ClpR3 [Arabidopsis thaliana]
 gi|51971032|dbj|BAD44208.1| ClpP protease complex subunit ClpR3 [Arabidopsis thaliana]
 gi|51971379|dbj|BAD44354.1| ClpP protease complex subunit ClpR3 [Arabidopsis thaliana]
 gi|51971381|dbj|BAD44355.1| ClpP protease complex subunit ClpR3 [Arabidopsis thaliana]
 gi|51971625|dbj|BAD44477.1| ClpP protease complex subunit ClpR3 [Arabidopsis thaliana]
 gi|51971739|dbj|BAD44534.1| ClpP protease complex subunit ClpR3 [Arabidopsis thaliana]
 gi|110742786|dbj|BAE99296.1| ClpP protease complex subunit ClpR3 [Arabidopsis thaliana]
 gi|332190276|gb|AEE28397.1| ATP-dependent Clp protease proteolytic subunit-related protein 3
           [Arabidopsis thaliana]
 gi|332190277|gb|AEE28398.1| ATP-dependent Clp protease proteolytic subunit-related protein 3
           [Arabidopsis thaliana]
          Length = 330

 Score =  112 bits (279), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 106/183 (57%), Gaps = 11/183 (6%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------G 84
           D+ S LL  RIV++   +   +  L+ A+L++L+  +P++ I +YINS G         G
Sbjct: 121 DLPSMLLDGRIVYIGMPLVPAVTELVVAELMYLQWLDPKEPIYIYINSTGTTRDDGETVG 180

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
           + + G AIYD++  +K  + T C+G A     LLLSAG KG RF +P+A+ ++ QP    
Sbjct: 181 MESEGFAIYDSLMQLKNEVHTVCVGAAIGQACLLLSAGTKGKRFMMPHAKAMIQQPRVPS 240

Query: 145 SG--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
           SG   ASD+   A++++  +  L E+  K+ G + E V   + R + M A +A ++GV+D
Sbjct: 241 SGLMPASDVLIRAKEVITNRDILVELLSKHTGNSVETVANVMRRPYYMDAPKAKEFGVID 300

Query: 203 KVL 205
           ++L
Sbjct: 301 RIL 303


>gi|67968315|dbj|BAE00215.1| ATP-dependent Clp protease proteolytic subunit [Selaginella
           uncinata]
          Length = 206

 Score =  112 bits (279), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 95/173 (54%), Gaps = 1/173 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D ++R  +ER+      ++D  A            EN  ++   Y N PGG V+AG+++Y
Sbjct: 22  DTHNRPYRERLPSSGQHMDDETANQPIRITTHPNGENRSQDTHSYTNPPGGAVSAGISVY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE 152
           DTMQ   P + T  +G AASMG  + + GE   R ALP+AR+++HQP+  F  GQA +  
Sbjct: 82  DTMQSAVPDVHTIRVGLAASMGPSISTGGEITRRMALPHARVMIHQPASSFYEGQAGERL 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
             A++I+K++  + +I+ +  GK    V K ++RD    A EA   G+ D V+
Sbjct: 142 MEAEEILKLRDCITKIHARKTGKPLWVVSKDMERDVFTPAREARVHGITDPVV 194


>gi|51970012|dbj|BAD43698.1| ClpP protease complex subunit ClpR3 [Arabidopsis thaliana]
          Length = 315

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 106/183 (57%), Gaps = 11/183 (6%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------G 84
           D+ S LL  RIV++   +   +  L+ A+L++L+  +P++ I +YINS G         G
Sbjct: 106 DLPSMLLDGRIVYIGMPLVPAVTELVVAELMYLQWLDPKEPIYIYINSTGTTRDDGETVG 165

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
           + + G AIYD++  +K  + T C+G A     LLLSAG KG RF +P+A+ ++ QP    
Sbjct: 166 MESEGFAIYDSLMQLKNEVHTVCVGAAIGQACLLLSAGTKGKRFMMPHAKAMIQQPRVPS 225

Query: 145 SG--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
           SG   ASD+   A++++  +  L E+  K+ G + E V   + R + M A +A ++GV+D
Sbjct: 226 SGLMPASDVLIRAKEVITNRDILVELLSKHTGNSVETVANVMRRPYYMDAPKAKEFGVID 285

Query: 203 KVL 205
           ++L
Sbjct: 286 RIL 288


>gi|332190278|gb|AEE28399.1| ATP-dependent Clp protease proteolytic subunit-related protein 3
           [Arabidopsis thaliana]
          Length = 370

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 106/183 (57%), Gaps = 11/183 (6%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------G 84
           D+ S LL  RIV++   +   +  L+ A+L++L+  +P++ I +YINS G         G
Sbjct: 121 DLPSMLLDGRIVYIGMPLVPAVTELVVAELMYLQWLDPKEPIYIYINSTGTTRDDGETVG 180

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
           + + G AIYD++  +K  + T C+G A     LLLSAG KG RF +P+A+ ++ QP    
Sbjct: 181 MESEGFAIYDSLMQLKNEVHTVCVGAAIGQACLLLSAGTKGKRFMMPHAKAMIQQPRVPS 240

Query: 145 SG--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
           SG   ASD+   A++++  +  L E+  K+ G + E V   + R + M A +A ++GV+D
Sbjct: 241 SGLMPASDVLIRAKEVITNRDILVELLSKHTGNSVETVANVMRRPYYMDAPKAKEFGVID 300

Query: 203 KVL 205
           ++L
Sbjct: 301 RIL 303


>gi|224009932|ref|XP_002293924.1| catalytic subunit of clp protein superfamily [Thalassiosira
           pseudonana CCMP1335]
 gi|220970596|gb|EED88933.1| catalytic subunit of clp protein superfamily [Thalassiosira
           pseudonana CCMP1335]
          Length = 225

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 61/175 (34%), Positives = 96/175 (54%), Gaps = 9/175 (5%)

Query: 42  ERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------GVVTAGMAI 92
            RIV++   +   +  L+ A+LL+L  E+  K +++YINS G         G  T   AI
Sbjct: 36  NRIVYIGMPLVPAVTELVIAELLYLNYEDQSKPVTMYINSSGTTTANGQAVGFETEAFAI 95

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIE 152
            D M++I+PP++T  +GQA    +++LS G KG R ALPNA I L+QP     GQASDI 
Sbjct: 96  ADVMKYIRPPVNTVAIGQAFGAAAMILSQGRKGGRAALPNATIRLNQPRSQARGQASDIA 155

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
             A+++   ++   ++  +  GK    V     R   +   EA ++G++DKV+ S
Sbjct: 156 IKAREVAHNRKTTCDLIAQATGKPLSVVMNDCQRVKYLQPDEAVEYGLIDKVIRS 210


>gi|63055012|gb|AAY29044.1| predicted ATP-dependent Clp protease proteolytic subunit 2
           [Bifidobacterium magnum]
          Length = 159

 Score =  111 bits (278), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 59/120 (49%), Positives = 86/120 (71%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP   E+T  G +  + Y+RL  +RI+++  Q++D  A  I AQLL LE+ +P +++ +
Sbjct: 40  VVPEFEEKTPYGYKRQNPYTRLFDDRIIWLGVQVDDTSADDIMAQLLVLESLDPNRDVMM 99

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQ+I+P + T C+GQAAS  ++LL+AG KG R  LPNAR+L+
Sbjct: 100 YINSPGGSMTAMTAIYDTMQYIQPDVQTVCLGQAASAAAILLAAGTKGKRLILPNARVLI 159


>gi|63055008|gb|AAY29042.1| predicted ATP-dependent Clp protease proteolytic subunit 2
           [Bifidobacterium pullorum]
          Length = 161

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 61/120 (50%), Positives = 88/120 (73%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y+RL ++RI+F+  Q++D  A  I AQLL LE+++P +++ +
Sbjct: 41  ILPQFEEKTPYGYKRQDPYTRLFEDRIIFMGVQVDDAAADDIMAQLLVLESQDPNRDVMM 100

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL+AG KG R  LPNAR+L+
Sbjct: 101 YINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLAAGAKGKRLILPNARVLI 160


>gi|289609764|emb|CBI60390.1| unnamed protein product [Sordaria macrospora]
          Length = 187

 Score =  111 bits (277), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 54/102 (52%), Positives = 72/102 (70%)

Query: 114 MGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC 173
           MGS LL+AGE GMR AL NARI++HQPSGG  G ASDI+  A++I +IK R+N +YVK  
Sbjct: 1   MGSFLLAAGEPGMRVALTNARIMIHQPSGGAQGMASDIQIQAKEIQRIKDRMNALYVKYT 60

Query: 174 GKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
           GK  EE+E+ +DRD  + A EA  +G+VD+V   R    E++
Sbjct: 61  GKPLEEIERAMDRDTFLEAEEAKAFGLVDQVFDKRPGAPEEA 102


>gi|224003027|ref|XP_002291185.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220972961|gb|EED91292.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 186

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 104/174 (59%), Gaps = 5/174 (2%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           SR L++R +++   I++  +  I + LL+L+ E+ +++I LY+N PG ++   +AIYD++
Sbjct: 13  SRQLRDRKLWIGQFIDEEASNSIISSLLYLQNESDKEDIELYLNIPGAILRPSLAIYDSI 72

Query: 97  QFIKP---PISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS--GGFSGQASDI 151
             +K     IST  +   A MG+L+  AG KG R++LPNAR LL +      F GQA+DI
Sbjct: 73  NELKADGCKISTTNIALCAGMGALIAGAGTKGRRYSLPNARYLLQKTGIDSVFRGQATDI 132

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
                ++ K   ++N    +  G+  + +++ L RD  +S+ EA  +G++D+VL
Sbjct: 133 ALEVANVKKWNEKINGEISRVTGQPIDRIDQDLKRDFYLSSEEAVRYGLIDEVL 186


>gi|194476565|ref|YP_002048744.1| ATP-dependent Clp protease proteolytic subunit [Paulinella
           chromatophora]
 gi|171191572|gb|ACB42534.1| ATP-dependent Clp protease proteolytic subunit [Paulinella
           chromatophora]
          Length = 219

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 107/197 (54%), Gaps = 22/197 (11%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIED------------HMATLICAQLLFLEAENPQKEISL 77
           E   D+ S LL ERI+++   +              ++  L+ AQLL LE E+    I++
Sbjct: 21  ESMSDLASILLSERIIYLGMALASDDETRQSFSLGMNVTQLMIAQLLCLEFES-NSAITI 79

Query: 78  YINSPG---------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           YINS G         G  T   AIYDT++FI+ P+ TFC+G A    ++LL+ G  G R 
Sbjct: 80  YINSTGSTDINSNAIGHETEAFAIYDTIRFIESPVHTFCVGVAMGTATMLLACGASGCRA 139

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPNA I+L+QP     G ++DI    + ++  +  ++EI   + GK+ +++    +R H
Sbjct: 140 SLPNASIILNQPYNYVGGSSTDINIQVEQLLLSRSIMHEILSIHIGKSLQQIRSDCNRIH 199

Query: 189 IMSASEACDWGVVDKVL 205
            ++A +A  +G++D V+
Sbjct: 200 HLTAYQALHYGIIDDVI 216


>gi|168025572|ref|XP_001765308.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683627|gb|EDQ70036.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 298

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 101/174 (58%), Gaps = 11/174 (6%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------GVVTAGMAIY 93
           RIV++   +   +  L+ A+LL+L+  +P++ I +YINS G         G+ T G AIY
Sbjct: 86  RIVYIGMPLVPAVTELVIAELLYLQYADPRQPIYVYINSTGTSRADGETVGLETEGFAIY 145

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           DT+  ++  I T  +G A     LLL++G+KGMR+ +P+A  ++ QP    +GQ S I+ 
Sbjct: 146 DTLMNVRNQIQTVAVGAAIGQACLLLASGDKGMRYMMPHATAMIQQPRLPSTGQMSAIDV 205

Query: 154 H--AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           H  A++++  +  L  +  K+ G  YE+V K + R   M+  +A ++GV DK+L
Sbjct: 206 HIRAKELINNRDTLVGLLAKHTGNPYEKVAKVMQRPFYMNPKKAVEFGVADKIL 259


>gi|51971563|dbj|BAD44446.1| ClpP protease complex subunit ClpR3 [Arabidopsis thaliana]
          Length = 330

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/183 (33%), Positives = 106/183 (57%), Gaps = 11/183 (6%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------G 84
           D+ S LL  RIV++   +   +  L+ A+L++L+  +P++ I +YINS G         G
Sbjct: 121 DLPSMLLDGRIVYIGMPLVPAVTELVVAELMYLQWLDPKEPIYIYINSTGTTRDDGETVG 180

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
           + + G AIYD++  +K  + T C+G A     LLLSAG KG RF +P+A+ ++ +P    
Sbjct: 181 MESEGFAIYDSLMQLKNEVHTVCVGAAIGQACLLLSAGTKGKRFMMPHAKAMIQRPRVPS 240

Query: 145 SG--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
           SG   ASD+   A++++  +  L E+  K+ G + E V   + R + M A +A ++GV+D
Sbjct: 241 SGLMPASDVLIRAKEVITNRDILVELLSKHTGNSVETVANVMRRPYYMDAPKAKEFGVID 300

Query: 203 KVL 205
           ++L
Sbjct: 301 RIL 303


>gi|46371973|gb|AAS90621.1| putative ATP-dependent Clp protease (proteolytic subunit)
           [uncultured soil bacterium]
          Length = 254

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 110/189 (58%), Gaps = 4/189 (2%)

Query: 20  PMVV--EQTNRGERSYDIYSRL-LKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           PM V  E+    ER   I  RL  K R V + G+I   +A   C +L+ L AE     ++
Sbjct: 60  PMDVNEEKPEAPERLDAITDRLAFKSRFVMLFGEINHAVARATCTRLIAL-AEESDGPVT 118

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           + I+SPGG V +G AI+D ++F++ P++T   G  AS G+ +  A  K  R  LPN R +
Sbjct: 119 VLISSPGGHVESGDAIHDIIRFVRAPVTTVGTGWVASAGTHVFLAAPKERRVCLPNTRFM 178

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  G A+DI   A++I++ + R+ ++  K  G++ ++V   ++RD  MSA EA 
Sbjct: 179 IHQPGGGAGGPATDIAIQAKEILRTRERIAKVISKQTGQSLQKVLADMERDFWMSAEEAI 238

Query: 197 DWGVVDKVL 205
            +G+V KV+
Sbjct: 239 VYGLVSKVI 247


>gi|168013355|ref|XP_001759365.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689295|gb|EDQ75667.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 296

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 101/174 (58%), Gaps = 11/174 (6%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------GVVTAGMAIY 93
           RIV++   +   +  L+ A+LL+L+  +P++ I +YINS G         G+ T G AIY
Sbjct: 84  RIVYIGMPLVPAVTELVIAELLYLQYADPRQPIYVYINSTGTARADGETVGLETEGFAIY 143

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           DT+  ++  I T  +G A     LLL++G+KGMR+ +P+A  ++ QP    +GQ S I+ 
Sbjct: 144 DTLMNVRNQIQTVAVGAAIGQACLLLASGDKGMRYMMPHATAMIQQPRLPSTGQMSAIDV 203

Query: 154 H--AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           H  A++++  +  L  +  K+ G   E+V K ++R   M+  +A D+GV DK+L
Sbjct: 204 HIRAKELINNRDTLVGLLAKHTGNPVEKVAKVMERPFYMNPKKAVDFGVADKIL 257


>gi|166235549|gb|ABY85464.1| ATP-dependent protease proteolytic subunit [Lychnis chalcedonica]
          Length = 222

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 100/180 (55%), Gaps = 1/180 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D Y  L K R++F+       +   I   LLFL  E+  K+  L+I+S GG+ T  MAIY
Sbjct: 27  DFYHELHKRRLLFLCQDFNYEIVNQIAGLLLFLHLEDEDKQQHLFIHSRGGLATHAMAIY 86

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSG-GFSGQASDIE 152
           DTMQ +   + T  MG  ASM +LLL+ G    R A  + RI+LH P+   F G AS++ 
Sbjct: 87  DTMQLVTLGVHTIGMGVVASMATLLLAGGAYTKRNAYAHTRIMLHLPATRPFKGTASEVL 146

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
             +++++++ + L EI  +  G+  + + K + +    SA EA  +G++D++ +  I ++
Sbjct: 147 GESKEVLRLTQTLVEILEERTGRPQDLIYKDMQKTTHFSAEEAQAYGIIDEIGLGEIKLD 206


>gi|153217638|ref|ZP_01951319.1| Clp protease [Vibrio cholerae 1587]
 gi|124113417|gb|EAY32237.1| Clp protease [Vibrio cholerae 1587]
          Length = 97

 Score =  109 bits (272), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 47/95 (49%), Positives = 69/95 (72%)

Query: 114 MGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC 173
           MG+ LL+ G  G R+ LPN+R+++HQP GGF GQASDI+ HAQ+I+ IK +LN +  ++ 
Sbjct: 1   MGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKNKLNRLLAEHT 60

Query: 174 GKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           G+  E +E+  DRD+ MSA +A ++G+VD VL  R
Sbjct: 61  GQPIEVIERDTDRDNFMSADQAVEYGLVDAVLKHR 95


>gi|331004493|ref|ZP_08327963.1| Clp protease [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330410671|gb|EGG90094.1| Clp protease [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 201

 Score =  108 bits (270), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 61/183 (33%), Positives = 102/183 (55%), Gaps = 5/183 (2%)

Query: 25  QTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG 84
           +TN G     + +R   +R + + G I D +A     ++L L  E+  + I++ INS GG
Sbjct: 8   RTNCGISQVSLETRFFDKRCININGDITDILALDFTDKILELNLES-DRPITILINSLGG 66

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP--SG 142
            + +G+ +YD +   K PI   C G+A SMG++L +   +  R+ LPN+ ++LHQP   G
Sbjct: 67  EINSGLLMYDAIVGSKAPIRMVCRGRAYSMGAILFACANE--RYMLPNSELMLHQPILGG 124

Query: 143 GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
             +G AS I+  +  +++ KR+LN +  K+ GKT EE++     DH     EA  + + D
Sbjct: 125 NVAGNASSIKNISDSMLETKRKLNGLLSKHIGKTEEEIDIATSFDHYFLPDEAIGFNLCD 184

Query: 203 KVL 205
           KV+
Sbjct: 185 KVI 187


>gi|290489442|gb|ADD31105.1| clp protease proteolytic subunit protein [Lonicera japonica]
          Length = 216

 Score =  108 bits (270), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 107/199 (53%), Gaps = 3/199 (1%)

Query: 19  VPMVVEQTNRGERS--YDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP +  Q +  E +   D+Y+ L +   +F+  +I+  ++  I   ++FL  E    ++ 
Sbjct: 5   VPKIPFQISGDEEASWVDVYNGLYRRGFLFIVQEIDTELSNQIVGLMVFLSLEGEVNDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            +I+S GG +  G AI+D + ++ P + T  +G+ ASM SL+++ G    R A P++RI+
Sbjct: 65  FFISSLGGSMVDGFAIFDMLVYLPPTMHTLSIGECASMASLIVAGGTFTQRIAFPHSRIM 124

Query: 137 LHQPSG-GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP+   F     +     ++  +++  + E Y K  G+    VE  L+RD  MSA EA
Sbjct: 125 IHQPNTFPFETPTGETFLEIKEFCRLRALVGEAYAKITGQPLWVVEIDLERDIFMSAQEA 184

Query: 196 CDWGVVDKVLMSRIDIEEK 214
            D+G+VD V   +++  + 
Sbjct: 185 KDYGIVDLVASGKLEFRQN 203


>gi|309322076|ref|YP_003933893.1| clp protease proteolytic subunit [Erodium texanum]
 gi|309322092|ref|YP_003933908.1| clp protease proteolytic subunit [Erodium texanum]
 gi|300069169|gb|ADJ66291.1| clp protease proteolytic subunit [Erodium texanum]
 gi|300069185|gb|ADJ66307.1| clp protease proteolytic subunit [Erodium texanum]
          Length = 208

 Score =  107 bits (268), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 101/181 (55%), Gaps = 3/181 (1%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+Y+ L +ER++F+   I+  +   + + ++FL  E       L INSPGG +  G+++Y
Sbjct: 30  DLYNLLFRERVLFLGRAIKPEITNHLVSLMVFLTVERDDWSPMLLINSPGGYIFNGLSLY 89

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS-GGFSGQASDIE 152
           DT++       T C+G A SM S++L  G    R A P+AR+++HQP    F  +  ++ 
Sbjct: 90  DTVRLSGA--RTLCVGTAVSMASVILVGGSDNKRAAFPHARVMIHQPRINKFEDEGPEVI 147

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
             A+ ++ ++  + EIYV   G+ +  +   L+ D  ++ +EA  +G+VD +L+   D E
Sbjct: 148 MEARIMLDLRHHIVEIYVLKTGQPFWVISVDLEVDTYLTPTEAKIYGLVDLILIKAKDAE 207

Query: 213 E 213
           E
Sbjct: 208 E 208


>gi|32401338|gb|AAP80841.1| ATP-dependent Clp protease proteolytic subunit [Griffithsia
           japonica]
          Length = 114

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/92 (57%), Positives = 67/92 (72%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           DIY+RL +ERI+F+  +I+D +A  I A +L+LE+E+  K I LYINSPGG V AGMAIY
Sbjct: 22  DIYNRLYRERIIFLGQEIDDEIANQIIAVMLYLESEDNSKPIYLYINSPGGSVIAGMAIY 81

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           DTM+ IK  + T  +G AASM S LL  GEKG
Sbjct: 82  DTMKHIKSEVVTINVGLAASMASFLLGGGEKG 113


>gi|139437300|ref|ZP_01771460.1| Hypothetical protein COLAER_00439 [Collinsella aerofaciens ATCC
           25986]
 gi|133776947|gb|EBA40767.1| Hypothetical protein COLAER_00439 [Collinsella aerofaciens ATCC
           25986]
          Length = 205

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 103/188 (54%), Gaps = 4/188 (2%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P+ + ++ RG     IY  +L  R + V G IE  MA  +C Q+  L+A +P + I++++
Sbjct: 11  PLTMRESARGITLTSIYDEMLARRELSVMGNIETPMAHDLCQQIRLLDATDPSRPITIFV 70

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
            S GG V +G+AIYD M+    PI T C+  AASMG+++   G+   R A P+A +++H 
Sbjct: 71  ASAGGSVRSGLAIYDAMRLASCPIRTVCLEFAASMGAVIFMGGDD-CRMA-PHAELMIHD 128

Query: 140 P--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           P    G  G A  ++  ++ +++ ++ L +I     G T + ++    +D  +SA  A +
Sbjct: 129 PLIPQGAGGSALALQETSRRLMQTRKTLTQILSDRSGLTPKRIQSLTAKDTYLSAERAVE 188

Query: 198 WGVVDKVL 205
            G   ++L
Sbjct: 189 LGFAHEIL 196


>gi|21449427|gb|AAM54134.1|AF514859_1 ATP-dependent Clp protease [Oryza sativa Indica Group]
          Length = 191

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 53/125 (42%), Positives = 79/125 (63%), Gaps = 9/125 (7%)

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG--- 146
           M +YD M+F K  IST C G AASMG+ LL+AG KG RF +PNARI++HQPSGG  G   
Sbjct: 1   MGVYDAMKFCKADISTVCFGLAASMGAFLLAAGTKGKRFCMPNARIMIHQPSGGAGGKNM 60

Query: 147 ------QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
                 Q +++    ++++  K ++N+I  +  GK  E++++    D+ MS  EA D+G+
Sbjct: 61  LICAIWQVTEMGLQIREMMYEKIKINKILSRITGKPEEQIDEDTKFDYFMSPWEAKDYGI 120

Query: 201 VDKVL 205
           VD V+
Sbjct: 121 VDSVI 125


>gi|295096776|emb|CBK85866.1| Protease subunit of ATP-dependent Clp proteases [Enterobacter
          cloacae subsp. cloacae NCTC 9394]
          Length = 69

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 45/61 (73%), Positives = 56/61 (91%)

Query: 16 LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
          + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI AQ+LFLEAENP+K  
Sbjct: 1  MALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKTF 60

Query: 76 S 76
          +
Sbjct: 61 T 61


>gi|254470249|ref|ZP_05083653.1| Clp protease [Pseudovibrio sp. JE062]
 gi|211960560|gb|EEA95756.1| Clp protease [Pseudovibrio sp. JE062]
          Length = 122

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 50/114 (43%), Positives = 73/114 (64%)

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           I+D ++FI+P +    MG  AS G+L+  +  K  RF   N R LLHQPSGG  G A+DI
Sbjct: 2   IHDMIKFIQPEVRILGMGWVASAGALIYVSVPKERRFCTQNTRFLLHQPSGGAGGMATDI 61

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           E  A++I+K++ RLN+I+    G+  E +EK  DRD+ MS  E  ++G+V KV+
Sbjct: 62  EIQAKEILKMRDRLNQIFADATGQPLERIEKDTDRDYWMSPDEGIEYGLVGKVI 115


>gi|224284163|gb|ACN39818.1| unknown [Picea sitchensis]
          Length = 327

 Score =  105 bits (261), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 96/174 (55%), Gaps = 11/174 (6%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------GVVTAGMAIY 93
           RI+F+   +   +  L+ A+ L+L+  +P++   +YINS G          + T G AIY
Sbjct: 115 RIIFIGMPLVPAVTELVIAEFLYLQWLDPRQPTYVYINSTGTSREDGETVALETEGFAIY 174

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           DTM  +K  I T   G A     LLL+AG+KG R+ LP+A++LL QP    +GQ   I+ 
Sbjct: 175 DTMMQMKNEIHTVAFGAAVGQACLLLAAGKKGKRYMLPHAQVLLQQPRLPATGQMPAIDV 234

Query: 154 H--AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           H  A++++  +    ++  K+ G  +E V K ++R   M   +A ++GV DK+L
Sbjct: 235 HIRAKELIHNRDTFVKLLAKHTGNPFETVAKAMERPFYMFPRQAVEFGVADKIL 288


>gi|255069967|ref|XP_002507065.1| predicted protein [Micromonas sp. RCC299]
 gi|226522340|gb|ACO68323.1| predicted protein [Micromonas sp. RCC299]
          Length = 247

 Score =  105 bits (261), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 66/192 (34%), Positives = 112/192 (58%), Gaps = 6/192 (3%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G+VP+ V  T+       + S LL +RI+ +  +I++ +AT +CA+LL L  E+P K+I 
Sbjct: 50  GVVPVAVNTTHG---PMGLTSALLLDRIIIIGDRIDEDVATRVCAELLALSYEDPDKDIR 106

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPP---ISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           L++N+  G       I D M++I+     IS   MG  A   ++LL+AG KG R A+P+ 
Sbjct: 107 LFVNATAGTQYCVQTILDMMEYIQSKGVDISVVGMGCVAGPPAMLLAAGTKGKRLAMPSC 166

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           RI+L QP GG SG + ++   A+++ +  R    ++ K  GK+++++ + L RD  MS  
Sbjct: 167 RIILSQPLGGLSGTSYEVRIQAKELSRNARMQVAVFAKFTGKSFDDMGEYLVRDTYMSPQ 226

Query: 194 EACDWGVVDKVL 205
           EA +  ++D V+
Sbjct: 227 EAKELNLIDGVI 238


>gi|115391925|ref|YP_778514.1| ATP-dependent Clp protease proteolytic subunit [Jasminum
           nudiflorum]
 gi|110456246|gb|ABG74651.1| ATP-dependent protease catalytic subunit [Jasminum nudiflorum]
          Length = 219

 Score =  105 bits (261), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 59/153 (38%), Positives = 90/153 (58%), Gaps = 2/153 (1%)

Query: 25  QTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG 84
           +  R +   D+YS+L    I+F+   I+  +A  + A +++L++ +P+    +YINSPGG
Sbjct: 41  KAERKQAWTDLYSKLYHGGILFLGDVIDTELANELIAAMVYLDSHHPEIRCYMYINSPGG 100

Query: 85  VVTAGMAIYDTMQFI-KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS-G 142
            V  G+AIYD M+ I    + T   GQAASM SLLL++GEKG R ALP++ I+LH+PS  
Sbjct: 101 GVFDGLAIYDAMKNIMTQEVRTTVYGQAASMASLLLASGEKGHRIALPHSEIMLHEPSMS 160

Query: 143 GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK 175
              G+   +      +  +K R+  IYV   GK
Sbjct: 161 PTRGKVEFLLSECDVLASLKERMLNIYVLETGK 193


>gi|226505068|ref|NP_001149025.1| LOC100282645 [Zea mays]
 gi|195624074|gb|ACG33867.1| ATP-dependent Clp protease proteolytic subunit-like [Zea mays]
          Length = 339

 Score =  104 bits (260), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 100/174 (57%), Gaps = 11/174 (6%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS---------PGGVVTAGMAIY 93
           RIV++   +   +  LI AQL++LE  N ++ + +YINS         P G+ + G AIY
Sbjct: 137 RIVYIGMPLVPAVTELIVAQLMYLEWMNSKEPVYIYINSTGTARDDGEPVGMESEGFAIY 196

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG--QASDI 151
           D M  +K  I T C+G AA    L+L+AG+KG R+  P+A+ ++ QP     G  QASD+
Sbjct: 197 DAMMRMKTEIHTLCIGAAAGHACLVLAAGKKGKRYMFPHAKAMIQQPRIPSYGMMQASDV 256

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
              A+++V  +  L ++  ++ G   E+++K +     M + +A ++GV+DK+L
Sbjct: 257 VIRAKEVVHNRNTLVKLLARHTGNPPEKIDKVMRGPFYMDSLKAKEFGVIDKIL 310


>gi|224284192|gb|ACN39832.1| unknown [Picea sitchensis]
          Length = 327

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 96/174 (55%), Gaps = 11/174 (6%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------GVVTAGMAIY 93
           RI+F+   +   +  L+ A+ L+L+  +P++   +YINS G          + T G AIY
Sbjct: 115 RIIFIGMPLVPAVTELVIAEFLYLQWLDPRQPTYVYINSTGTSREDGETVALETEGFAIY 174

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           DTM  +K  + T   G A     LLL+AG+KG R+ LP+A++LL QP    +GQ   I+ 
Sbjct: 175 DTMMQMKNEMHTVAFGAAVGQACLLLAAGKKGKRYMLPHAQVLLQQPRLPATGQMPAIDV 234

Query: 154 H--AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           H  A++++  +    ++  K+ G  +E V K ++R   M   +A ++GV DK+L
Sbjct: 235 HIRAKELIHNRDTFVKLLAKHTGNPFETVAKAMERPFYMFPRQAVEFGVADKIL 288


>gi|108708097|gb|ABF95892.1| ATP-dependent Clp protease proteolytic subunit, putative, expressed
           [Oryza sativa Japonica Group]
 gi|218192812|gb|EEC75239.1| hypothetical protein OsI_11536 [Oryza sativa Indica Group]
 gi|222624913|gb|EEE59045.1| hypothetical protein OsJ_10812 [Oryza sativa Japonica Group]
          Length = 341

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 99/174 (56%), Gaps = 11/174 (6%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS---------PGGVVTAGMAIY 93
           RIV++   +   +  L+ AQL++LE  N ++ + +YINS         P G+ + G AIY
Sbjct: 139 RIVYIGMPLVPAVTELVVAQLMYLEWMNSKEPVYIYINSTGTARDDGEPVGMESEGFAIY 198

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG--QASDI 151
           D M  +K  I T C+G AA    L+L+AG+KG R+  P+A+ ++ QP     G  QASD+
Sbjct: 199 DAMMRMKTEIHTLCIGAAAGHACLVLAAGKKGKRYMFPHAKAMIQQPRIPSYGMMQASDV 258

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
              A+++V  +  L  +  ++ G   E+++K +     M + +A ++GV+DK+L
Sbjct: 259 VIRAKEVVHNRNTLVRLLARHTGNPPEKIDKVMRGPFYMDSLKAKEFGVIDKIL 312


>gi|212292629|gb|ACJ24246.1| hypothetical protein [Dunaliella viridis]
          Length = 204

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 78/125 (62%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           + P VV      E S D+++ LL++RI+F+ G + D +AT I   LL LEA + +++I +
Sbjct: 78  ITPDVVVGKGEEETSIDLFNYLLRQRIIFIAGYVNDKVATQIVGALLALEAIDEEEDIRI 137

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG   +   + D ++ IKP + T  +G   S  SL+L+AG KG RFA+ N RI++
Sbjct: 138 YINSPGGQPYSVFGVVDAIKSIKPDVQTLGLGACYSYASLILAAGSKGKRFAMKNTRIMM 197

Query: 138 HQPSG 142
            QP G
Sbjct: 198 TQPMG 202


>gi|253795704|ref|YP_003038800.1| putative ATP-dependent Clp protease proteolytic subunit [Candidatus
           Hodgkinia cicadicola Dsem]
 gi|253740012|gb|ACT34347.1| putative ATP-dependent Clp protease proteolytic subunit [Candidatus
           Hodgkinia cicadicola Dsem]
          Length = 160

 Score =  102 bits (254), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 91/162 (56%), Gaps = 2/162 (1%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPI 103
           ++ V G+I    A  + A+   L+  + ++ + L I+SPGG + AGM +YD +Q +   +
Sbjct: 1   MLMVAGEITSKRA--LEARSKLLKTASTRRVLKLLIDSPGGEIDAGMGLYDALQAVAADV 58

Query: 104 STFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKR 163
            T C+GQA S+ SLLL+ G++G R+   +  + LH P+    G A  + +HA   ++ + 
Sbjct: 59  ETGCVGQAHSIASLLLACGKRGKRWCAASCSVSLHWPTSSAFGSADCVLQHASSALEARA 118

Query: 164 RLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
              + Y+K+C +   E+E+ +      SA  A  WG+VD+V+
Sbjct: 119 LAVKAYMKHCNRRLAEIEEAMSAGTCASAWRAAAWGLVDRVV 160


>gi|255542730|ref|XP_002512428.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis]
 gi|223548389|gb|EEF49880.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis]
          Length = 325

 Score =  102 bits (254), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 96/174 (55%), Gaps = 11/174 (6%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------GVVTAGMAIY 93
           RIV++   +   +  L+ A+L++L+  +P++ I LYINS G         G+ T G AIY
Sbjct: 123 RIVYIGMPLVPAVTELVVAELMYLQWMDPKEPIYLYINSTGTTRDDGETVGMETEGFAIY 182

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG--QASDI 151
           D+M  +K  I T  +G A     LLL+AG KG RF +P+A+ ++ QP    SG   ASD+
Sbjct: 183 DSMMQLKNEIHTVAVGAAIGQACLLLAAGTKGKRFMMPHAKAMIQQPKVPSSGLMAASDV 242

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
              A++ V  +  L E+  K+   + E V   + R   M +  A ++GV+DK+L
Sbjct: 243 LIRAKEAVTNRDTLVELLAKHTENSVETVANAMKRPFYMDSRRAKEFGVIDKIL 296


>gi|242035789|ref|XP_002465289.1| hypothetical protein SORBIDRAFT_01g035610 [Sorghum bicolor]
 gi|241919143|gb|EER92287.1| hypothetical protein SORBIDRAFT_01g035610 [Sorghum bicolor]
          Length = 339

 Score =  102 bits (254), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 99/174 (56%), Gaps = 11/174 (6%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS---------PGGVVTAGMAIY 93
           RIV++   +   +  L+ AQL++LE  N ++ + +YINS         P G+ + G AIY
Sbjct: 137 RIVYIGMPLVPAVTELVVAQLMYLEWMNSKEPVYIYINSTGTARDDGEPVGMESEGFAIY 196

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG--QASDI 151
           D M  +   I T C+G AA    L+L+AG+KG R+  P+A+ ++ QP     G  QASD+
Sbjct: 197 DAMMRMNTEIHTLCIGAAAGHACLVLAAGKKGKRYMFPHAKAMIQQPRIPSYGMMQASDV 256

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
              A+++V  +  L ++  ++ G   E+++K +     M + +A ++GV+DK+L
Sbjct: 257 VIRAKEVVHNRNTLVKLLARHTGNPPEKIDKVMRGPFYMDSLKAKEFGVIDKIL 310


>gi|326494016|dbj|BAJ85470.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326495362|dbj|BAJ85777.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511045|dbj|BAJ91870.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 337

 Score =  102 bits (253), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 98/174 (56%), Gaps = 11/174 (6%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS---------PGGVVTAGMAIY 93
           RIV++   +   +  LI AQL++L+  N  +   +YINS         P G+ T G AIY
Sbjct: 135 RIVYIGMPLVPAVTELIVAQLMYLDWMNSSEPAYIYINSTGTARDDGEPVGMETEGFAIY 194

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG--QASDI 151
           D M  +K  + T C+G AA    L+L+AG+KG R+  P+A+ L+ QP     G  QASD+
Sbjct: 195 DAMMRMKTEVHTLCIGAAAGHACLVLAAGKKGKRYMFPHAKALIQQPRIPSYGMMQASDV 254

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
              A+++V  +  L ++  ++ G   E+++K +     M + +A ++GV+DK+L
Sbjct: 255 VIRAKEVVHNRNTLVKLLARHTGNPPEKIDKVMRGPFYMDSLKAKEFGVIDKIL 308


>gi|149192589|ref|ZP_01870749.1| ATP-dependent Clp protease proteolytic subunit [Vibrio shilonii
          AK1]
 gi|148833577|gb|EDL50654.1| ATP-dependent Clp protease proteolytic subunit [Vibrio shilonii
          AK1]
          Length = 69

 Score =  102 bits (253), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 45/55 (81%), Positives = 52/55 (94%)

Query: 17 GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           LVPMVVEQT+RGERSYDIYSRLLKERI+F+TGQ+ED+MA LI AQ+LFLE+ENP
Sbjct: 15 ALVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDNMANLIVAQMLFLESENP 69


>gi|225450774|ref|XP_002279451.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296089701|emb|CBI39520.3| unnamed protein product [Vitis vinifera]
          Length = 322

 Score =  101 bits (252), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 99/174 (56%), Gaps = 11/174 (6%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------GVVTAGMAIY 93
           RIV++   +   +  L+ A+L++L+  +P++ + +YIN  G         G+ T G AIY
Sbjct: 120 RIVYIGMPLVPAVTELVIAELMYLQWMDPKEPVYVYINCTGTTRDDGERVGMETEGFAIY 179

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG--QASDI 151
           D M  +K  I T  +G A     LLL+AG KG RF +P+A+ ++ QP    SG   ASD+
Sbjct: 180 DAMMQLKNEIHTVAVGAAIGQACLLLAAGTKGKRFMMPHAKAMIQQPRVPSSGLMPASDV 239

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
              A++++  +  L ++  K+ G + E V   + R + M +++A ++GV+DK+L
Sbjct: 240 LIRAKEVITNRDTLVKLLAKHTGNSEETVSTVMRRPYYMDSTKAKEFGVIDKIL 293


>gi|224125178|ref|XP_002319519.1| predicted protein [Populus trichocarpa]
 gi|118486796|gb|ABK95233.1| unknown [Populus trichocarpa]
 gi|222857895|gb|EEE95442.1| predicted protein [Populus trichocarpa]
          Length = 341

 Score =  101 bits (252), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 96/174 (55%), Gaps = 11/174 (6%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------GVVTAGMAIY 93
           RIV++   +   +  L+ A+L++L+  +P+  I +YINS G         G+ T G AIY
Sbjct: 139 RIVYIGMPLVAAVTELVVAELMYLQWMDPKAPIYIYINSTGTTRDDGESVGMETEGFAIY 198

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG--QASDI 151
           D+M  +K  I T  +G A     LLL+AG KG R+ +P+A+ ++ QP    SG   ASD+
Sbjct: 199 DSMMQLKNEIHTVAVGAAIGQACLLLAAGTKGHRYMMPHAKAMIQQPRVPSSGLMPASDV 258

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
              A++ V  +  L E+  K+ G + E V   + R   M +  A ++GV+DK+L
Sbjct: 259 LIRAKEAVINRDVLTELLAKHTGNSVETVANVMKRPFYMDSRRAKEFGVIDKIL 312


>gi|255070315|ref|XP_002507239.1| predicted protein [Micromonas sp. RCC299]
 gi|226522514|gb|ACO68497.1| predicted protein [Micromonas sp. RCC299]
          Length = 203

 Score =  101 bits (252), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 97/174 (55%), Gaps = 11/174 (6%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------GVVTAGMAIY 93
           RI+++   +   +  LI ++LL+++  +P +   +YINS G         G  T   +IY
Sbjct: 30  RIIYIGMPLVPAVTELIVSELLYMQYTDPARPCYIYINSTGCQRADGEVVGFETEATSIY 89

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           DTM++I   I T   G A     +LLSAG+KG RF   NA  +LHQP    +GQ   IE 
Sbjct: 90  DTMKYIGNEIFTVGTGVAIGQACMLLSAGDKGKRFMTKNATAMLHQPRVPSTGQRQAIEL 149

Query: 154 HA--QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           H   +++++ K+ + +I  +  G + E+++K + R   M+A +A  +G++DK++
Sbjct: 150 HIKWKEVLEQKKTMVDILSQTTGHSKEQIDKDIQRPMYMTAEDAIAYGIIDKIV 203


>gi|166201972|gb|ABY84442.1| ATP-dependent protease proteolytic subunit [Silene conoidea]
          Length = 231

 Score =  101 bits (251), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 97/199 (48%), Gaps = 28/199 (14%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           +I + L ++RI+ +  +I+  +   I   LL L  E+  K+ +L+INS GG     + IY
Sbjct: 25  EIQNFLYEKRILLIFEEIKPKVTCEITGLLLCLSNEDEYKDFTLFINSAGGKTRDALPIY 84

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF--------- 144
           DTMQ + P + T  +G AASMG+L+L  GE G R A PN RI +H P+  F         
Sbjct: 85  DTMQVVAPAVRTVGIGVAASMGALILLGGEMGKRTASPNCRIKIHSPARAFYTTDSDSDS 144

Query: 145 -------------------SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                              +    D      ++++++  L +IY K   K    +EK L 
Sbjct: 145 DSDTDKKKKEKDPKKKKEQNRSVEDFSDAVGEMLRLREELVKIYAKRTQKPISVIEKDLA 204

Query: 186 RDHIMSASEACDWGVVDKV 204
            D  MS+ EA ++G++D +
Sbjct: 205 XDLFMSSEEAKEYGIIDTL 223


>gi|297837933|ref|XP_002886848.1| hypothetical protein ARALYDRAFT_475559 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332689|gb|EFH63107.1| hypothetical protein ARALYDRAFT_475559 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 118

 Score =  101 bits (251), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 72/116 (62%), Gaps = 1/116 (0%)

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQA 148
           MAIYDTMQF++P + T CMG AAS+ S +L  G    R A P+A +++HQP+  F   Q 
Sbjct: 1   MAIYDTMQFVRPDVQTICMGLAASIASFILVGGAITKRIAFPHAWVMIHQPASSFYEAQT 60

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            +    A++++K++  +  +YV+  GK    V + ++RD  MSA+EA   G+VD V
Sbjct: 61  GEFILEAEELLKLRETITRVYVQRTGKPIWVVSEDMERDVFMSATEAQAHGIVDLV 116


>gi|302773329|ref|XP_002970082.1| hypothetical protein SELMODRAFT_65351 [Selaginella moellendorffii]
 gi|300162593|gb|EFJ29206.1| hypothetical protein SELMODRAFT_65351 [Selaginella moellendorffii]
          Length = 300

 Score =  100 bits (250), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 64/182 (35%), Positives = 93/182 (51%), Gaps = 10/182 (5%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------G 84
           D+ S LL  RIV++   I   +  LI A++LFL+ +NP K I LYIN  G         G
Sbjct: 115 DLPSLLLDARIVYLGMAIVPAVTELIVAEMLFLDFDNPSKPIYLYINCSGTQNEKKESVG 174

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS-GG 143
             T   AI DTM ++K  + T   G A    ++LLS GEKG R   P++   L+ P    
Sbjct: 175 FETEAYAIADTMSYVKSKVYTVNCGMAFGQAAMLLSVGEKGFRAVQPSSSTKLYAPKVNQ 234

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            SG A D+   A+++    +   ++  K  GK  EE+ K + R     A EA ++G+ DK
Sbjct: 235 SSGSAIDMFIKAKELDSNTKYYIDLLAKGTGKPEEEIAKDIQRPKYFKAKEAVEYGLADK 294

Query: 204 VL 205
           V+
Sbjct: 295 VI 296


>gi|302807086|ref|XP_002985274.1| hypothetical protein SELMODRAFT_424284 [Selaginella moellendorffii]
 gi|300147102|gb|EFJ13768.1| hypothetical protein SELMODRAFT_424284 [Selaginella moellendorffii]
          Length = 357

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/182 (35%), Positives = 93/182 (51%), Gaps = 10/182 (5%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------G 84
           D+ S LL  RIV++   I   +  LI A++LFL+ +NP K I LYIN  G         G
Sbjct: 136 DLPSLLLDARIVYLGMAIVPAVTELIVAEMLFLDFDNPSKPIYLYINCSGTQNEKKESVG 195

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS-GG 143
             T   AI DTM ++K  + T   G A    ++LLS GEKG R   P++   L+ P    
Sbjct: 196 FETEAYAIADTMSYVKSKVYTVNCGMAFGQAAMLLSVGEKGFRAVQPSSSTKLYAPKVNQ 255

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            SG A D+   A+++    +   ++  K  GK  EE+ K + R     A EA ++G+ DK
Sbjct: 256 SSGSAIDMFIKAKELDSNTKYYIDLLAKGTGKPEEEIAKDIQRPKYFKAKEAVEYGLADK 315

Query: 204 VL 205
           V+
Sbjct: 316 VI 317


>gi|255646355|gb|ACU23657.1| unknown [Glycine max]
          Length = 124

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 72/104 (69%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           E++  + +RL +ER++F+  +++  ++  + + +++L  E   K++ L+INSPGG V  G
Sbjct: 18  EKNGILINRLYRERLLFLGQEVDSEISNQLISLMVYLSIEEENKDLYLFINSPGGWVIPG 77

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +AIYDTMQF++P + T CMG AASMGS LL+ GE   R A P+A
Sbjct: 78  IAIYDTMQFVQPDVQTVCMGLAASMGSFLLAGGEITKRLAFPHA 121


>gi|255088111|ref|XP_002505978.1| predicted protein [Micromonas sp. RCC299]
 gi|226521249|gb|ACO67236.1| predicted protein [Micromonas sp. RCC299]
          Length = 223

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 99/191 (51%), Gaps = 28/191 (14%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------GVVTAGMAIY 93
           RIV++   +   +  L+ A+LLFL  E   +   +YI+SPG         GV +   AI 
Sbjct: 20  RIVYIGMPLLPAVTELVVAELLFLNYEQVDRPGYVYIHSPGSINEKGECVGVDSEAYAIL 79

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           DTM++I+P I T  +G+     ++LL+AG+KG R ALPNA+I+ H P          + R
Sbjct: 80  DTMRYIRPKIHTVAVGKCFGNAAMLLAAGDKGCRHALPNAQIMTHPPK---------LNR 130

Query: 154 HAQDIVKIKRRLNEIYV----------KNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
                V ++ + NEI V          +  GK  E V++ LDR    +  +A D+G++D+
Sbjct: 131 TFDTSVNVQIKANEIEVCEDTYMGFMSEFSGKPIETVKEELDRRRYFTPQQAIDYGLIDR 190

Query: 204 VLMSRIDIEEK 214
           ++    D+ EK
Sbjct: 191 IIQKGTDVFEK 201


>gi|255635968|gb|ACU18330.1| unknown [Glycine max]
          Length = 324

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 97/174 (55%), Gaps = 11/174 (6%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------GVVTAGMAIY 93
           RIV++   +   +  L+ A+L+ L+  +P++ I +YINS G         G+ T G AIY
Sbjct: 122 RIVYIGMPLVPAVTELVVAELMCLQYMDPKETIFIYINSTGTTRDDGETVGMETEGFAIY 181

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG--QASDI 151
           D M  +K  I T  +G A     LLLSAG  G RF +P+A+ ++ QP    SG   ASD+
Sbjct: 182 DAMMQLKNEIHTVAVGSAIGQACLLLSAGTPGKRFMMPHAKAMIQQPRIPSSGLMPASDV 241

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
              A++++  +  L ++  K+ G + E V   + R + M A+ A ++GV+D++L
Sbjct: 242 LIRAKEVIINRDNLVKLLAKHTGNSEETVANVMKRPYYMDATRAKEFGVIDRIL 295


>gi|225428973|ref|XP_002264383.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296083061|emb|CBI22465.3| unnamed protein product [Vitis vinifera]
          Length = 388

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/191 (35%), Positives = 96/191 (50%), Gaps = 10/191 (5%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------G 84
           D+ S LL  RI ++   I   +A L+ AQ ++L+ +NP K I LYINS G         G
Sbjct: 169 DLPSLLLDARICYLGMPIVPAVAELLVAQFMWLDFDNPSKPIYLYINSTGTQNEKMETVG 228

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS-GG 143
             T   AI D+M + K  + T   G A    ++LLS G KG R   PNA   L+ P    
Sbjct: 229 SETEAYAIADSMAYCKSDVYTVNCGTAYGQAAMLLSVGAKGYRGLQPNASTKLYLPKVNR 288

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            SG   D+   A+++        E+  K  GKT EE++K ++R   + A EA D+G+ DK
Sbjct: 289 SSGATIDMWIKAKELDANSEYYIELLAKGTGKTKEEIKKDVERPKYLQAQEAIDYGLADK 348

Query: 204 VLMSRIDIEEK 214
           ++ S     EK
Sbjct: 349 IISSMDPAYEK 359


>gi|56783783|dbj|BAD81195.1| putative ATP-dependent Clp protease proteolytic subunit [Oryza
           sativa Japonica Group]
 gi|125569868|gb|EAZ11383.1| hypothetical protein OsJ_01248 [Oryza sativa Japonica Group]
          Length = 306

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/211 (35%), Positives = 116/211 (54%), Gaps = 17/211 (8%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
           DV   +VP +   T   +   D+ S L K RIV++   +   +  L+ A+ L+L+ ++ +
Sbjct: 78  DVVAMVVPFL-RGTAWQQPPPDLASFLYKNRIVYLGMCLVPSVTELMLAEFLYLQYDDAE 136

Query: 73  KEISLYINSPG--------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           K I LYINS G        G  T   AIYD M+++K PI T C+G A    +LLL+AG K
Sbjct: 137 KPIYLYINSTGTTKNGEKLGYETEAFAIYDAMRYVKVPIFTLCVGNAWGEAALLLAAGAK 196

Query: 125 -GMRFALP----NARILLH---QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
             + FA      N  ILL    QP G F GQA+D++   ++I  +K  + ++  ++ GK+
Sbjct: 197 VSVVFASKKYEDNDLILLTFNVQPIGRFQGQATDVDIARKEIRNVKIEMIKLLSRHIGKS 256

Query: 177 YEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
            EE+ + + R    S SEA D+G++DKVL +
Sbjct: 257 VEEIAQDIKRPKYFSPSEAVDYGIIDKVLYN 287


>gi|217074128|gb|ACJ85424.1| unknown [Medicago truncatula]
          Length = 322

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 96/174 (55%), Gaps = 11/174 (6%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------GVVTAGMAIY 93
           RIV++   +   +  L+ A+L+FL+   P++ I +YINS G          + + G AIY
Sbjct: 119 RIVYIGMPLVPAVTELVIAELMFLQWMAPKEPIYIYINSTGTTRADGETVAMESEGFAIY 178

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG--QASDI 151
           D M  +K  I+T  +G A     LLLSAG KG R+  P+A+ ++ QP    SG   ASD+
Sbjct: 179 DAMMQMKTEINTVALGAAVGQACLLLSAGTKGRRYMTPHAKAMIQQPRVPSSGLRPASDV 238

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
             HA++++  +  L ++  K+   + E V   + R + M A  A ++GV+DK+L
Sbjct: 239 LIHAKEVMVNRDTLVKLLAKHTENSEETVSNVMKRSYYMDALLAKEFGVIDKIL 292


>gi|166235707|gb|ABY85615.1| ATP-dependent protease proteolytic subunit [Silene conica]
          Length = 247

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 101/223 (45%), Gaps = 41/223 (18%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           +I + L ++RI+F+  +I+  +   I   LL L  EN  K+ +L+INS GG     + IY
Sbjct: 25  EIQNFLYEKRILFIFEEIKPKVTCEITGLLLCLSNENEYKDFTLFINSAGGKTRDALPIY 84

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF--------- 144
           DTMQ + P + T  +G AASMG+L+L  GE G R A PN RI +H P+  F         
Sbjct: 85  DTMQVVAPAVRTVGIGVAASMGALILLGGEMGKRAASPNCRIKIHLPASAFYTTDSDSNS 144

Query: 145 -------------------------------SGQASDIERHAQDIVKIKRRLNEIYVKNC 173
                                          S    D      ++++++    +IY K  
Sbjct: 145 DSDSNSDSTSDSNSDTDKKKKEKDPKKKKEQSRSVEDFSDGVGEMLRLREEFVKIYAKRT 204

Query: 174 GKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
            K    +EK L R   MS+ EA  +G++D  L  + D ++  K
Sbjct: 205 QKPISVIEKDLARGLFMSSEEAKAYGIID-TLHYKFDFKKTIK 246


>gi|166235795|gb|ABY85699.1| ATP-dependent protease proteolytic subunit [Silene fruticosa]
          Length = 397

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 103/172 (59%), Gaps = 1/172 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           ++Y+    +R++F+  ++++ +A  +   L++L  E+  ++I L+INSPGG + AG+ +Y
Sbjct: 218 ELYTLTYHKRLLFLCDKLKNELANKLINLLIYLSTEDTTEDIFLFINSPGGFLGAGLGLY 277

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI-E 152
           +T+QF+ P +ST  +G A S+ + +L  G    R A P A +++HQP+       + I  
Sbjct: 278 NTIQFVPPQVSTIALGIAGSISAFVLVGGALSKRVAYPCAXVMMHQPASTKHKNKTRICV 337

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             + D++ I+  +  +Y++  GKT + + + ++R   MSA+EA   G+VD V
Sbjct: 338 MESFDLLTIRDMITNVYIQRTGKTKQVIYEDMERPFFMSATEAQVHGIVDHV 389


>gi|148906385|gb|ABR16347.1| unknown [Picea sitchensis]
          Length = 393

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/191 (32%), Positives = 95/191 (49%), Gaps = 10/191 (5%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------G 84
           D+ S LL  RI+++   I   +  L+ A+L++L+ +NP K I  YINSPG          
Sbjct: 173 DLPSLLLDARILYLGMPIVPAVTELLIAELMWLDYDNPSKPIYFYINSPGTQNEKHEPIA 232

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGG 143
             T   AI D + ++KP + T   G A     +LLS G KG R  +P++   LH P    
Sbjct: 233 FETEAYAIADMIAYVKPKVYTLNCGMAFGQAGMLLSLGTKGHRALMPSSTTKLHLPVVNK 292

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            SG + D+   A+++        E+  K  GKT EE+ K + R       EA D+G+ DK
Sbjct: 293 SSGSSIDMWIKAKELEANTEYYIELLAKGIGKTKEEIAKDIQRSRYFFPQEAIDYGIADK 352

Query: 204 VLMSRIDIEEK 214
           +L  +  + EK
Sbjct: 353 ILPKQGLVMEK 363


>gi|308800244|ref|XP_003074903.1| ClpP2 Clp protease proteolytic subunit, probable (IC) [Ostreococcus
           tauri]
 gi|119358826|emb|CAL52171.2| ClpP2 Clp protease proteolytic subunit, probable (IC) [Ostreococcus
           tauri]
          Length = 297

 Score = 99.0 bits (245), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 95/174 (54%), Gaps = 11/174 (6%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------GVVTAGMAIY 93
           RIV++   +   +  LI ++LL+L+  + +K   +YINS G         G  T   AIY
Sbjct: 97  RIVYIGMPLVPAVTELIVSELLYLQYADQKKPCYIYINSTGCTRADGEVVGFETEATAIY 156

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG--QASDI 151
           DTM++I   I T   G A     +LLSAG+KG RF  P+A  +LHQP    +G  QA+++
Sbjct: 157 DTMKYIGNEIYTVGTGVAVGQACVLLSAGDKGKRFMTPHATAMLHQPRVPSTGERQATEL 216

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
                + +  K+ L  +  K  G + E+++K + R   M+A++A  +GV DK++
Sbjct: 217 NIKWHETLAQKKTLLNVLSKTTGHSVEKLDKDMRRPLYMTAADAIQYGVADKIV 270


>gi|148910727|gb|ABR18430.1| unknown [Picea sitchensis]
          Length = 393

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/191 (32%), Positives = 95/191 (49%), Gaps = 10/191 (5%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------G 84
           D+ S LL  RI+++   I   +  L+ A+L++L+ +NP K I  YINSPG          
Sbjct: 173 DLPSLLLDARILYLGMPIVPAVTELLIAELMWLDYDNPSKPIYFYINSPGTQNEKHEPIA 232

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGG 143
             T   AI D + ++KP + T   G A     +LLS G KG R  +P++   LH P    
Sbjct: 233 FETEAYAIADMIAYVKPKVYTLNCGMAFGQAGMLLSLGTKGHRALMPSSTTKLHLPVVNK 292

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            SG + D+   A+++        E+  K  GKT EE+ K + R       EA D+G+ DK
Sbjct: 293 SSGSSIDMWIKAKELEANTEYYIELLAKGIGKTKEEIAKDIQRSRYFFPQEANDYGIADK 352

Query: 204 VLMSRIDIEEK 214
           +L  +  + EK
Sbjct: 353 ILPKQGLVMEK 363


>gi|255647150|gb|ACU24043.1| unknown [Glycine max]
          Length = 230

 Score = 98.6 bits (244), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 66/96 (68%), Gaps = 6/96 (6%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G  PMV       ER   + S+L + RI+   G ++D MA +I AQLL+L+A +P K+I 
Sbjct: 99  GPPPMV------AERFQSVISQLFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPNKDIV 152

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAA 112
           +Y+NSPGG VTAGMAI+DTM+ I+P +ST C+G AA
Sbjct: 153 MYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAA 188


>gi|224103735|ref|XP_002313173.1| predicted protein [Populus trichocarpa]
 gi|222849581|gb|EEE87128.1| predicted protein [Populus trichocarpa]
          Length = 391

 Score = 98.6 bits (244), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 68/191 (35%), Positives = 93/191 (48%), Gaps = 10/191 (5%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------G 84
           D+ S LL  RI ++   I   +  L+ AQ ++L+ E+P K I LYINS G         G
Sbjct: 173 DLPSLLLDARICYLGMPIVPAVTELLVAQFMYLDYEDPSKPIYLYINSSGTQNEKMETVG 232

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS-GG 143
             T   AI D M + K  I T   G A    ++LLS G KG R   PN+   L+ P    
Sbjct: 233 SETEAYAIADIMSYCKSTIYTVNCGMAYGQAAMLLSLGAKGYRALQPNSSTKLYLPKVNR 292

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            SG A D+   A+++        E+  K  GK  EE+ K + R   + A EA D+G+ DK
Sbjct: 293 SSGAAVDMWIKAKELDANTEYYIELLAKGTGKPKEELVKDIQRPKYLKAQEAIDYGIADK 352

Query: 204 VLMSRIDIEEK 214
           +L S  D  EK
Sbjct: 353 LLSSNDDAFEK 363


>gi|147821309|emb|CAN74592.1| hypothetical protein VITISV_041995 [Vitis vinifera]
          Length = 429

 Score = 98.2 bits (243), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 44/83 (53%), Positives = 62/83 (74%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ER   + S+L + RI+   G ++D MA +I AQLL+L+A +P K+I +Y+NSPGG VTAG
Sbjct: 98  ERFQSVVSQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAVDPDKDIVMYVNSPGGSVTAG 157

Query: 90  MAIYDTMQFIKPPISTFCMGQAA 112
           MAI+DTM+ I+P +ST C+G AA
Sbjct: 158 MAIFDTMRHIRPDVSTVCVGLAA 180



 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 67/106 (63%), Gaps = 2/106 (1%)

Query: 102 PISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKI 161
           P+  F      SMG+ LLS G KG R++LPN+RI++HQP GG  G  +DI+  A +++  
Sbjct: 312 PLCIFWT--VGSMGAFLLSCGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHH 369

Query: 162 KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           K  LN     + G++ E++ +  DRD  MSA EA ++G++D V+++
Sbjct: 370 KANLNGYLSYHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVILN 415


>gi|148807233|gb|ABR13326.1| putative ATP-dependent protease proteolytic subunit [Prunus dulcis]
          Length = 111

 Score = 98.2 bits (243), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 44/97 (45%), Positives = 66/97 (68%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           +RL +ER++F+   ++  ++  +   +++L  E+  K++ L+INSPGG V  G+AIYDTM
Sbjct: 12  NRLYRERLLFLGQGVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTM 71

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           QF++P I T CMG AASMGS +L  GE   R A P+A
Sbjct: 72  QFVRPDIQTICMGLAASMGSFILVGGEITKRLAFPHA 108


>gi|125525351|gb|EAY73465.1| hypothetical protein OsI_01344 [Oryza sativa Indica Group]
          Length = 284

 Score = 98.2 bits (243), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 70/190 (36%), Positives = 108/190 (56%), Gaps = 16/190 (8%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG--------GV 85
           D+ S L K RIV++   +   +  L+ A+ L+L+ ++ +K I LYINS G        G 
Sbjct: 76  DLASFLYKYRIVYLGMCLLPSVTELMLAEFLYLQYDDAEKPIYLYINSTGTTKNGEKLGY 135

Query: 86  VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK-GMRFALP----NARILLH-- 138
            T   AIYD M+++K PI T C+G A    +LLL+AG K  + FA      N  ILL   
Sbjct: 136 ETEAFAIYDAMRYVKVPIFTLCVGNAWGEAALLLAAGAKVSVVFASKKYEDNDLILLTFN 195

Query: 139 -QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
            QP G F GQA+D++   ++I  +K  + ++  ++ GK+ EE+ + + R    S SEA D
Sbjct: 196 VQPIGRFQGQATDVDIARKEIRNVKIEMIKLLSRHIGKSVEEIAQDIKRPKYFSPSEAVD 255

Query: 198 WGVVDKVLMS 207
           +G++DKVL +
Sbjct: 256 YGIIDKVLYN 265


>gi|303275766|ref|XP_003057177.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461529|gb|EEH58822.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 372

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 97/191 (50%), Gaps = 28/191 (14%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------GVVTAGMAIY 93
           RIV++   +   +  L+ A+LLFL  E  ++   +YI+S G         G+ T   AI 
Sbjct: 163 RIVYIGMPLLPAVTELVVAELLFLNYEQNERPGYMYIHSGGSINEKGEVVGIDTEAYAIL 222

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           DTM++IKP + T  +G+     ++LL+AG  G R ALPNA+I+ H P          + R
Sbjct: 223 DTMRYIKPKMHTVAVGKCFGNAAMLLAAGHPGCRHALPNAQIMTHPPK---------LNR 273

Query: 154 HAQDIVKIKRRLNEIYV----------KNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
                V ++ R NEI V          +  GK  EEV + LDR    +  +A ++G++D+
Sbjct: 274 TFDTAVNVQIRANEIDVCEDTYMGFMSEFSGKPQEEVTRDLDRRRYFTPKQAIEYGLIDR 333

Query: 204 VLMSRIDIEEK 214
           ++    D+ E+
Sbjct: 334 IIQKGSDVFER 344


>gi|224159711|ref|XP_002338112.1| predicted protein [Populus trichocarpa]
 gi|222870927|gb|EEF08058.1| predicted protein [Populus trichocarpa]
          Length = 99

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 43/97 (44%), Positives = 66/97 (68%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           +RL +ER++F+   I+  ++  +   +++L  E+  K++ L+INSPGG V  G+AIYDTM
Sbjct: 3   NRLYRERLLFLGQDIDSEISNQLIGLMVYLSTESEIKDLYLFINSPGGWVIPGIAIYDTM 62

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           QF++P + T CMG AASMGS +L  G+   R A P+A
Sbjct: 63  QFVRPDVQTVCMGLAASMGSFILVGGKITKRLAFPHA 99


>gi|210630760|ref|ZP_03296584.1| hypothetical protein COLSTE_00469 [Collinsella stercoris DSM 13279]
 gi|210160356|gb|EEA91327.1| hypothetical protein COLSTE_00469 [Collinsella stercoris DSM 13279]
          Length = 193

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 94/173 (54%), Gaps = 3/173 (1%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+ S L   R++ +  Q+   + + + A +L LE ++P+  I+L ++SPGG V AG+ + 
Sbjct: 21  DVLSELYNSRVLMLNEQVTPAVCSQLIANMLVLERKDPEAPITLLVSSPGGDVYAGLGLI 80

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ-PSGGFSGQASDIE 152
           D M+ +  P+ T   G  ASM S++L+ G    R A P+  ILLHQ  +G    Q +DI 
Sbjct: 81  DVMRDLSCPVDTVGYGLVASMASVILACGRH--RSAYPHTNILLHQLMTGAGMSQQTDIS 138

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
             A     ++ +L+E+  +    + +EV +  +RD       A + GV+D+V+
Sbjct: 139 IVANHAASLRAKLDEMLAERMSLSADEVHELTERDCWCDVGRALELGVIDEVI 191


>gi|145343690|ref|XP_001416446.1| chloroplast Clp protease, subunit of ClpP peptidase complex
           [Ostreococcus lucimarinus CCE9901]
 gi|144576671|gb|ABO94739.1| chloroplast Clp protease, subunit of ClpP peptidase complex
           [Ostreococcus lucimarinus CCE9901]
          Length = 308

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 97/174 (55%), Gaps = 11/174 (6%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------GVVTAGMAIY 93
           RIV++   +   +  LI ++LL+L+  + +K   +YINS G         G  T   AI+
Sbjct: 108 RIVYIGMPLVPAVTELIVSELLYLQYTDQKKPCYIYINSTGCTRADGEVVGFETEATAIF 167

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG--QASDI 151
           DTM++I   I T   G A     +LLSAG+KG R+  P+A  +LHQP    +G  QA+++
Sbjct: 168 DTMKYIGNEIYTVGTGVAIGQACMLLSAGDKGKRYMTPHATAMLHQPRVPSTGERQATEL 227

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
               ++ +  K+ L +I  +  G +  +++K + R   M+A +A ++G+VDKV+
Sbjct: 228 NIKWRETLAQKKSLLDILSQTTGHSVAKLDKDMQRPLYMTAKDAIEYGIVDKVI 281


>gi|297275903|ref|XP_001087805.2| PREDICTED: putative ATP-dependent Clp protease proteolytic subunit,
           mitochondrial [Macaca mulatta]
          Length = 179

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 44/67 (65%), Positives = 57/67 (85%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           L L+P+VVEQT RGER+YDIYSRLL+ERIV V G I+D +A+L+ AQLLFL++E+ +K I
Sbjct: 56  LPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPI 115

Query: 76  SLYINSP 82
            +YINSP
Sbjct: 116 HMYINSP 122


>gi|324999707|ref|ZP_08120819.1| ATP-dependent Clp protease proteolytic subunit [Pseudonocardia sp.
           P1]
          Length = 185

 Score = 94.7 bits (234), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 95/180 (52%), Gaps = 13/180 (7%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           + D+  RLL ERIV ++ +++D +A   C +LL L AE+P+++++L + SPGG   A  A
Sbjct: 7   TSDLADRLLGERIVLLSRELDDDVAAETCGRLLLLAAEDPRRDVTLQVLSPGGSPVAAAA 66

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQA--- 148
           ++DT++ +   + T   G  A     L++AG  G RFALP+A   +  P    +GQA   
Sbjct: 67  VHDTIRALGVDVVTVANGSLAGPAPFLVAAGTPGKRFALPHASFRIPDPED--TGQAPVR 124

Query: 149 ----SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
                D+   A  + + +  ++ +  + CG +         R+  ++A +A   G+VD V
Sbjct: 125 GAHPGDVRVRADHLARRRAEIDALTERYCGGSLPGDA----RERWLTAGDAAAAGLVDHV 180


>gi|307103436|gb|EFN51696.1| hypothetical protein CHLNCDRAFT_139949 [Chlorella variabilis]
          Length = 229

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 95/200 (47%), Gaps = 33/200 (16%)

Query: 6   CAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF 65
           CA+++ + +   L P V++    GE   D+Y  LL+ RI+F+  +I D +A  + A LL 
Sbjct: 62  CARRERDPI---LAP-VIQMGPGGEDVVDLYGYLLRNRIIFLNQRISDQVACQVVASLLA 117

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L++ N ++EI +YIN P G   A ++I DTM+ IK                         
Sbjct: 118 LDSLNEEEEIKMYINCPQGSPYAVVSILDTMRAIK------------------------- 152

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                PN RILL QP GG  G A +    A ++ +  R +     +  G   E VE   D
Sbjct: 153 ----APNTRILLQQPMGGLQGSADECNITATELNRNMRVMYRFLSEATGLPVETVEMECD 208

Query: 186 RDHIMSASEACDWGVVDKVL 205
           RD+ +   +A   G++D V+
Sbjct: 209 RDNFLGPEQAIALGLIDSVI 228


>gi|222139910|ref|YP_002519978.1| ATP-dependent Clp protease proteolytic subunit [Ephedra equisetina]
 gi|220983579|dbj|BAH11346.1| ATP-dependent Clp protease proteolytic subunit [Ephedra equisetina]
          Length = 221

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 96/171 (56%), Gaps = 5/171 (2%)

Query: 41  KERIVFVTGQIEDHMATLICAQLLFLEAENPQK----EISLYINSPGGVVTAGMAIYDTM 96
           + R +F+   +++ + ++    LL+L  ++ +K    +I +YINS GG +  G++I+D M
Sbjct: 3   RTRCIFLGQPVDEDIGSIFVGILLYLFIDDIRKGKSRQIFMYINSCGGAILPGLSIFDIM 62

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIERHA 155
             ++  I T  +G  AS  +L+LSAG  G R   P++RI++HQP      G A    + A
Sbjct: 63  LQLRETIHTIGLGLVASTATLVLSAGTFGFRNTGPHSRIMIHQPRASLRDGPAWLFAKDA 122

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             + ++++ + + Y     +  E +E  LD++  MS  EA D+G+VD+V +
Sbjct: 123 FFVQQLRKMIVQCYCLRTPQFEELIENALDKNTYMSPEEAVDFGLVDRVAL 173


>gi|255639455|gb|ACU20022.1| unknown [Glycine max]
          Length = 364

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 91/184 (49%), Gaps = 10/184 (5%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------G 84
           D+ S LL  RI ++   I   +  LI AQ ++L+ +NP K I LYINS G         G
Sbjct: 151 DLPSLLLDARICYLGMPIVPAVTELIVAQFMWLDYDNPSKPIYLYINSSGTLNEKNETVG 210

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS-GG 143
             T   +I D M ++K  + T   G A    ++LLS G KG R   PN+   L+ P    
Sbjct: 211 SETEAYSIADMMSYVKADVYTVNCGMAFGQAAMLLSLGTKGYRAVQPNSSTKLYLPKVNR 270

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            SG   D+   A+++        E+  K  GK+ EE+ K + R   + A +A D+G+ DK
Sbjct: 271 SSGAVIDMWIKAKELEANTEYYIELLAKGTGKSKEEIAKDVQRPKYLQAQDAIDYGIADK 330

Query: 204 VLMS 207
           ++ S
Sbjct: 331 IIDS 334


>gi|246880736|gb|ACS95048.1| ATP-dependent Clp protease proteolytic subunit [Dunaliella salina]
          Length = 527

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/145 (34%), Positives = 84/145 (57%), Gaps = 2/145 (1%)

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           F+E E+  K++ + INS GG V  G+ ++D +QFIK    T  +G AAS  SL+L+ G  
Sbjct: 346 FIEEES--KKVFVIINSFGGSVGNGITVHDALQFIKAGSLTLGLGVAASASSLVLAGGTI 403

Query: 125 GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
           G R+       ++HQP     GQASDI   +Q+I+KI+  + +IY  +  +   ++ + L
Sbjct: 404 GERYVTEGCHTMIHQPESSLQGQASDIWIDSQEIMKIRLDVADIYSLSTYRPRHKILRDL 463

Query: 185 DRDHIMSASEACDWGVVDKVLMSRI 209
           DRD  ++A E   +G+ D++  + +
Sbjct: 464 DRDFYLNAPETISYGLADEIATNEV 488


>gi|168026989|ref|XP_001766013.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162682656|gb|EDQ69072.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 348

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 92/185 (49%), Gaps = 10/185 (5%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------G 84
           D+ S LL  RI ++   I   +  LI A+LL+L+ +NP K I  YINS G         G
Sbjct: 127 DLPSLLLDARICYLGMAIVPAVTELIIAELLWLDFDNPSKPIYFYINSSGTQNEKKESIG 186

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS-GG 143
             T   AI DT++++K  + T   GQA    ++LLS GEKG R   P++   L+ P    
Sbjct: 187 FETEAYAIADTIRYVKSKVYTINCGQAFGQAAMLLSIGEKGFRALQPSSSTKLYSPKVNQ 246

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            SG ++D+    +++        ++     GK+ EE+   + R       EA D+G+ DK
Sbjct: 247 SSGSSTDMWIKGKELDANTDYYIDLLASGTGKSKEEIANDIRRPRYFRPQEAIDYGLADK 306

Query: 204 VLMSR 208
           ++  R
Sbjct: 307 IIEPR 311


>gi|18402863|ref|NP_564560.1| CLPR1; serine-type endopeptidase [Arabidopsis thaliana]
 gi|75315328|sp|Q9XJ35|CLPR1_ARATH RecName: Full=ATP-dependent Clp protease proteolytic
           subunit-related protein 1, chloroplastic; Short=ClpR1;
           AltName: Full=nClpP5; Flags: Precursor
 gi|8569101|gb|AAF76446.1|AC015445_13 Identical to nClpP5 from Arabidopsis thaliana gb|AB022330 and
           contains prenyltransferase PF|00432 and CLP protease
           PF|00574 domains. ESTs gb|H76908, gb|AA605567,
           gb|T21932, gb|T22976 come from this gene
 gi|5360595|dbj|BAA82069.1| nClpP5 [Arabidopsis thaliana]
 gi|15010752|gb|AAK74035.1| At1g49970/F2J10_5 [Arabidopsis thaliana]
 gi|23308343|gb|AAN18141.1| At1g49970/F2J10_5 [Arabidopsis thaliana]
 gi|332194380|gb|AEE32501.1| ATP-dependent Clp protease proteolytic subunit-related protein 1
           [Arabidopsis thaliana]
          Length = 387

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 95/191 (49%), Gaps = 10/191 (5%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------G 84
           D+ S LL  RI ++   I   +  L+ AQ ++L+ +NP K I LYINSPG         G
Sbjct: 171 DLPSLLLDARICYLGMPIVPAVTELLVAQFMWLDYDNPTKPIYLYINSPGTQNEKMETVG 230

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS-GG 143
             T   AI DT+ + K  + T   G A    ++LLS G+KG R   P++   L+ P    
Sbjct: 231 SETEAYAIADTISYCKSDVYTINCGMAFGQAAMLLSLGKKGYRAVQPHSSTKLYLPKVNR 290

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            SG A D+   A+++        E+  K  GK+ E++ + + R   + A  A D+G+ DK
Sbjct: 291 SSGAAIDMWIKAKELDANTEYYIELLAKGTGKSKEQINEDIKRPKYLQAQAAIDYGIADK 350

Query: 204 VLMSRIDIEEK 214
           +  S+    EK
Sbjct: 351 IADSQDSSFEK 361


>gi|297852688|ref|XP_002894225.1| hypothetical protein ARALYDRAFT_891918 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297340067|gb|EFH70484.1| hypothetical protein ARALYDRAFT_891918 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 387

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 95/191 (49%), Gaps = 10/191 (5%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------G 84
           D+ S LL  RI ++   I   +  L+ AQ ++L+ +NP K I LYINSPG         G
Sbjct: 171 DLPSLLLDARICYLGMPIVPAVTELLVAQFMWLDYDNPTKPIYLYINSPGTQNEKMETVG 230

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS-GG 143
             T   AI DT+ + K  + T   G A    ++LLS G+KG R   P++   L+ P    
Sbjct: 231 SETEAYAIADTISYCKSDVYTINCGMAFGQAAMLLSLGKKGYRAVQPHSSTKLYLPKVNR 290

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            SG A D+   A+++        E+  K  GK+ E++ + + R   + A  A D+G+ DK
Sbjct: 291 SSGAAIDMWIKAKELDANTEYYIELLAKGTGKSKEQINEDIKRPKYLQAQAAIDYGIADK 350

Query: 204 VLMSRIDIEEK 214
           +  S+    EK
Sbjct: 351 IADSQDSSFEK 361


>gi|121607361|ref|YP_995168.1| endopeptidase Clp [Verminephrobacter eiseniae EF01-2]
 gi|121552001|gb|ABM56150.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Verminephrobacter eiseniae EF01-2]
          Length = 229

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 104/218 (47%), Gaps = 31/218 (14%)

Query: 29  GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTA 88
           G  S  +    +  R VF+ G I+  MA     QL  L + N    I ++I+SPGG V +
Sbjct: 13  GTMSAKLMEYAINARKVFIIGTIDHKMAKEAVQQLHILASIN-DDPIYVFISSPGGHVES 71

Query: 89  GMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ----PSG-- 142
           G  I+D ++FI P +     G  AS G+L+  A +K  R++LPN   LLH     P+G  
Sbjct: 72  GDLIFDAIRFITPKVIVVSSGWVASAGALIYVAADKENRYSLPNTHFLLHMKEIIPAGEM 131

Query: 143 GFSGQASD---IERHAQDIVK---------------------IKRRLNEIYVKNCGKTYE 178
            ++  A D    ER AQ +                       ++ RLN I+ +  G+T E
Sbjct: 132 TYTETADDRAARERFAQFVSSSYRKKPPEPVNKSLHEYRTNVMRARLNRIFAEATGQTLE 191

Query: 179 EVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           ++      D  MSA +A ++G+V ++++S  +I  + K
Sbjct: 192 KITADTGHDFWMSAEQAVEYGLVHEIIVSEKEIRSQKK 229


>gi|115452971|ref|NP_001050086.1| Os03g0344900 [Oryza sativa Japonica Group]
 gi|113548557|dbj|BAF12000.1| Os03g0344900 [Oryza sativa Japonica Group]
          Length = 349

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 99/182 (54%), Gaps = 19/182 (10%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS---------PGGVVTAGMAIY 93
           RIV++   +   +  L+ AQL++LE  N ++ + +YINS         P G+ + G AIY
Sbjct: 139 RIVYIGMPLVPAVTELVVAQLMYLEWMNSKEPVYIYINSTGTARDDGEPVGMESEGFAIY 198

Query: 94  DTMQFIKPP---ISTFCMGQAASMGSLLLSAGEKGMRFALPNAR-----ILLHQPSGGFS 145
           D M  +K     I T C+G AA    L+L+AG+KG R+  P+A+      ++ QP     
Sbjct: 199 DAMMRMKTEKIRIHTLCIGAAAGHACLVLAAGKKGKRYMFPHAKDSIMPAMIQQPRIPSY 258

Query: 146 G--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
           G  QASD+   A+++V  +  L  +  ++ G   E+++K +     M + +A ++GV+DK
Sbjct: 259 GMMQASDVVIRAKEVVHNRNTLVRLLARHTGNPPEKIDKVMRGPFYMDSLKAKEFGVIDK 318

Query: 204 VL 205
           +L
Sbjct: 319 IL 320


>gi|308807867|ref|XP_003081244.1| ATP-dependent Clp protease proteolytic subunit 3 (ISS)
           [Ostreococcus tauri]
 gi|116059706|emb|CAL55413.1| ATP-dependent Clp protease proteolytic subunit 3 (ISS)
           [Ostreococcus tauri]
          Length = 335

 Score = 92.4 bits (228), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 99/190 (52%), Gaps = 10/190 (5%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG---- 89
           D+ S LL  RI ++   +   +  L+ A+LL+L  E  +K   +YINS G +   G    
Sbjct: 103 DLPSLLLNARICYIGMSLVPAVTELVVAELLYLGYEQAEKPCYVYINSGGSINEKGEVVG 162

Query: 90  -----MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
                 AI DTM++I+ PI T  +G+     SL+L+ G+KG R ALP+ +I    P    
Sbjct: 163 MDNEAYAILDTMRYIRSPIHTVAVGKCHGNASLILAGGDKGRRHALPHVQISTGPPKLNR 222

Query: 145 SGQAS-DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
           +  ++ +++  A +    +    ++  +  GK  E V K LDR    + ++A ++G++DK
Sbjct: 223 TFDSTQNVQIRANECAMYEDTYMDLMAEYTGKDGETVRKDLDRTRYFTPNQAIEYGIIDK 282

Query: 204 VLMSRIDIEE 213
           V+   +++ E
Sbjct: 283 VITKGLNVME 292


>gi|2245061|emb|CAB10484.1| Clp proteinase like protein [Arabidopsis thaliana]
 gi|7268455|emb|CAB80975.1| Clp proteinase like protein [Arabidopsis thaliana]
          Length = 241

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 68/114 (59%), Gaps = 8/114 (7%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG--------GV 85
           D+ S L K RIV++   +   +  LI A+ L+L+ E+ +K I LYINS G        G 
Sbjct: 105 DLASYLFKNRIVYLGMSLVPSVTELILAEFLYLQYEDEEKPIYLYINSTGTTKNGEKLGY 164

Query: 86  VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
            T   AIYD M ++KPPI T C+G A    +LLL+AG KG R ALP++ I++ Q
Sbjct: 165 DTEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLTAGAKGNRSALPSSTIMIKQ 218


>gi|290962145|ref|YP_003493327.1| ATP-dependent Clp protease [Streptomyces scabiei 87.22]
 gi|260651671|emb|CBG74796.1| putative ATP-dependent Clp protease [Streptomyces scabiei 87.22]
          Length = 165

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 77/135 (57%), Gaps = 3/135 (2%)

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP--SG 142
            +TA  A+YDT +F+   + T C GQA S  ++L +AG  G R  LP AR L+HQP  + 
Sbjct: 25  TLTAMTALYDTNRFVTCDVETVCPGQAGSAAAVLPAAGTPGKRSMLPGARALIHQPAMAD 84

Query: 143 GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
              GQA D    A+++ + +R + E+ V++ G++ E +   ++RD  + A  A  +G+ D
Sbjct: 85  PVEGQAGDPAIRAEELTRHRRTMEEMLVRHTGRSPERIGADIERDTFLDAEAAVAYGLAD 144

Query: 203 KVLMS-RIDIEEKSK 216
           +V+ S R D+   S 
Sbjct: 145 RVVQSRRTDVTPPSP 159


>gi|326491715|dbj|BAJ94335.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 151

 Score = 91.3 bits (225), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 37/80 (46%), Positives = 62/80 (77%)

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPNAR+++HQPSGG  GQA+DI   A++I+K++ RLN+IY K+ G+  +++E+ ++RD 
Sbjct: 34  SLPNARVMIHQPSGGAQGQATDIAIQAKEILKLRDRLNKIYAKHTGQNIDKIEQCMERDL 93

Query: 189 IMSASEACDWGVVDKVLMSR 208
            M   EA +WG++D+V+ +R
Sbjct: 94  FMDPEEAREWGLIDEVIENR 113


>gi|85001017|ref|XP_955227.1| ATP-dependent Clp protease proteolytic subunit [Theileria annulata
           strain Ankara]
 gi|65303373|emb|CAI75751.1| ATP-dependent Clp protease proteolytic subunit, putative [Theileria
           annulata]
          Length = 261

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 92/161 (57%), Gaps = 10/161 (6%)

Query: 55  MATLICAQLLFLEAENPQKEISLYINSPG------GVVTA---GMAIYDTMQFIKPPIST 105
           +A L+ +QLL+L+ ++  K I +YINS        G+ T+    + I D M ++K  + T
Sbjct: 97  VAHLVISQLLYLDYDSQDKPIKIYINSDNERSNEDGISTSEIDALNIVDVMNYLKNEVIT 156

Query: 106 FCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS-GQASDIERHAQDIVKIKRR 164
             +G+A    +L+L++G  G R+ LP +  LL Q     S  QA DI  ++++I+K +R 
Sbjct: 157 INLGKAYGPAALILASGTPGKRYVLPRSYTLLRQSPTTLSFRQAEDIAIYSREILKARRS 216

Query: 165 LNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           + +++ K C K+ EE+ + ++    M + E  ++G+ DK+L
Sbjct: 217 VIKVFSKACNKSEEEILEKINVGDYMGSQETVNFGLADKIL 257


>gi|168061571|ref|XP_001782761.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162665734|gb|EDQ52408.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 391

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 97/193 (50%), Gaps = 11/193 (5%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------G 84
           D+ S LL  RI ++   I   +  LI A+LL+L+ +NP K I  YINS G         G
Sbjct: 170 DLPSLLLDARICYLGMAIVPAVTELIIAELLWLDFDNPTKPIYFYINSSGTQNEKKESIG 229

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS-GG 143
             T   AI DT++++K  + T   GQA    ++LLS GEKG R   P++   L+ P    
Sbjct: 230 FETEAYAIADTIRYVKSKVYTINCGQAFGQAAMLLSLGEKGYRALQPSSSTKLYSPKVNQ 289

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            SG ++D+    +++        ++     GK+ E +   + R       EA D+G+ DK
Sbjct: 290 SSGSSTDMWIKGKELDANTDYYIDLLASGTGKSKEVIANDIRRPRYFRPQEAVDYGLADK 349

Query: 204 VLMSR-IDIEEKS 215
           ++  R I +E+++
Sbjct: 350 IIEPRGIAMEKRN 362


>gi|220983435|dbj|BAH11204.1| ATP-dependent Clp protease proteolytic subunit [Welwitschia
           mirabilis]
          Length = 254

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 100/184 (54%), Gaps = 5/184 (2%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFL----EAENPQKEISLYINSPGGVVTAG 89
           D+   +  +R VF+ G + +    +I A L +      AE   + + +YINS GG    G
Sbjct: 6   DLMDLMTVQRCVFMFGPLTEEGGGVILATLFYYFFNDVAEYRNRPVFVYINSLGGAFMMG 65

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG-QA 148
           + I+DTM  IK  + T  +G  AS G+L L+AG +G+R A PN+ I+LHQPS       A
Sbjct: 66  LTIHDTMILIKERVFTIALGMVASTGTLTLTAGTRGIRHAAPNSLIMLHQPSADLDNTSA 125

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           S+  + ++++ +++R++ + Y    G + + ++  LD+   MS   A +  +VD V + +
Sbjct: 126 SEFVKESEEVNQLRRKMVQSYAIRTGHSEQFIDICLDKPLFMSPRTAWNLNLVDNVFVPK 185

Query: 209 IDIE 212
            ++ 
Sbjct: 186 WELN 189


>gi|145350809|ref|XP_001419790.1| chloroplast Clp protease, subunit of ClpP peptidase complex
           [Ostreococcus lucimarinus CCE9901]
 gi|144580022|gb|ABO98083.1| chloroplast Clp protease, subunit of ClpP peptidase complex
           [Ostreococcus lucimarinus CCE9901]
          Length = 381

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 97/199 (48%), Gaps = 28/199 (14%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------G 84
           D+ S LL  RI ++   +   +  L+ A+LL+L  E  +K   +YINS G         G
Sbjct: 149 DLPSLLLNARICYIGMSLVPAVTELVVAELLYLGYEQAEKPCYVYINSGGSLNEKGEVVG 208

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
           +     AI DTM++I+P I T  +G+     SL+L+AG+KG R ALP+ +I         
Sbjct: 209 MDNEAYAILDTMRYIRPKIHTVAVGKCHGNASLILAAGDKGCRHALPHVQI--------- 259

Query: 145 SGQASDIERHAQDIVKIKRRLNEIYVKN----------CGKTYEEVEKTLDRDHIMSASE 194
           S Q   + R       ++ R NE  +             GK  + V K LDR    + ++
Sbjct: 260 STQPPKLNRTFDSTQNVQIRANECALYEDTYMGFMSEFSGKDIDVVRKDLDRTRYFTPNQ 319

Query: 195 ACDWGVVDKVLMSRIDIEE 213
           A ++G++DKV+   +++ E
Sbjct: 320 AIEYGLIDKVITKGLNVME 338


>gi|187763126|ref|YP_001876601.1| ATP-dependent clp protease proteolytic subunit [Welwitschia
           mirabilis]
 gi|163311656|gb|ABY26814.1| ATP-dependent clp protease proteolytic subunit [Welwitschia
           mirabilis]
          Length = 254

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 101/184 (54%), Gaps = 5/184 (2%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFL----EAENPQKEISLYINSPGGVVTAG 89
           D+   +  +R VF+ G + +    +I A L +      AE   + + +YINS GG    G
Sbjct: 6   DLMDLMTVQRCVFMFGPLTEEGGGVILATLFYYFFNDVAEYRNRPVFVYINSLGGAFMMG 65

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQA 148
           + I+DTM  IK  + T  +G  AS G+L L+AG +G+R A PN+ I+LHQPS    +  A
Sbjct: 66  LTIHDTMILIKERVFTIALGMVASTGTLTLTAGTRGIRHAAPNSLIMLHQPSADLDNTSA 125

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           S+  + ++++ +++R++ + Y    G + + ++  LD+   MS   A +  +VD V + +
Sbjct: 126 SEFVKESEEVNQLRRKMVQSYAIRTGHSEQFIDICLDKPLFMSPRTAWNLNLVDNVFVPK 185

Query: 209 IDIE 212
            ++ 
Sbjct: 186 WELN 189


>gi|159470091|ref|XP_001693193.1| inactive subunit of chloroplast ClpP complex [Chlamydomonas
           reinhardtii]
 gi|158277451|gb|EDP03219.1| inactive subunit of chloroplast ClpP complex [Chlamydomonas
           reinhardtii]
          Length = 276

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/184 (35%), Positives = 94/184 (51%), Gaps = 14/184 (7%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG--------GV 85
           D+ +RL  ERI+++   I+  +A L+ AQL  L  E P   I  YINS G        G 
Sbjct: 44  DLATRLFSERIMYLGMPIDSSVAELLTAQLFVLVQEAPDP-IFFYINSTGIAKSTTKFGN 102

Query: 86  VTAGMAIYDTMQFIKP--PISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
               +A+Y  M+ ++   PI T C+G A    +LLLSAG  G R AL ++ I+L QP   
Sbjct: 103 EHEAIAVYSMMKGVQKYCPIYTLCVGNAFGEAALLLSAGSPGKRAALRSSTIMLRQPLQR 162

Query: 144 FSG-QASDIERHAQDIVKIKRRLNEIYVKNCG-KTYEEVEKTLDRDHIMSASEACDWGVV 201
             G QASDI+ + + I + K      Y+  C  KT E++     R    +  EA  +G++
Sbjct: 163 LGGMQASDIDIY-RKITREKTATMAKYLAACTKKTEEQIMTDFTRPRYFNPYEAVSYGLI 221

Query: 202 DKVL 205
           D VL
Sbjct: 222 DTVL 225


>gi|302837484|ref|XP_002950301.1| hypothetical protein VOLCADRAFT_120863 [Volvox carteri f.
           nagariensis]
 gi|300264306|gb|EFJ48502.1| hypothetical protein VOLCADRAFT_120863 [Volvox carteri f.
           nagariensis]
          Length = 298

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/184 (35%), Positives = 97/184 (52%), Gaps = 14/184 (7%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG--------GV 85
           D+ +RL  ERI+++   I+  +A L+ AQL  L  E P   I  YINS G        G 
Sbjct: 66  DLATRLFTERIMYLGMPIDSSVAELLTAQLFVLVQEAPDP-IFFYINSTGIAKSTTKFGN 124

Query: 86  VTAGMAIYDTMQFIKP--PISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
               +A+Y  M+ ++   PI T C+G A    +LLLSAG  G R AL ++ I+L QP   
Sbjct: 125 EHEAVAVYHMMKGVQKFCPIYTLCVGNAFGEAALLLSAGTPGKRAALRSSTIMLRQPLQR 184

Query: 144 FSG-QASDIERHAQDIVKIKRRLNEIYVKNCG-KTYEEVEKTLDRDHIMSASEACDWGVV 201
            SG QASDI+ + + I + K +    Y+  C  KT E++ +   R    +  EA  +G++
Sbjct: 185 LSGMQASDIDIY-RKITREKTQTMAKYLAVCTKKTEEQIMEDFIRPRYFNPYEAVTYGLI 243

Query: 202 DKVL 205
           D VL
Sbjct: 244 DTVL 247


>gi|255573147|ref|XP_002527503.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis]
 gi|223533143|gb|EEF34901.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis]
          Length = 308

 Score = 88.2 bits (217), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 91/191 (47%), Gaps = 10/191 (5%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------G 84
           D+ S LL  RI ++   I   +  L+ AQ ++L+ ++  K I LYINS G         G
Sbjct: 90  DLPSLLLDARICYLGMPIVPAVTELLVAQFMYLDYDDSSKPIYLYINSSGTQNEKMETVG 149

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS-GG 143
             T   AI D M + K  + T   G A     +LLS G KG R   PNA   L+ P    
Sbjct: 150 SETEAYAIADAMFYCKSTVYTVNCGMAYGQAGMLLSLGAKGYRALQPNASTKLYLPKVNR 209

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            SG   D+   A+++        ++  K  GKT EE+ K + R    ++ EA ++G+ DK
Sbjct: 210 SSGAVIDMWIKAKELDANTEYYIDLLAKGTGKTKEEINKDIQRPKYFNSKEAIEYGLADK 269

Query: 204 VLMSRIDIEEK 214
           ++ S  D  EK
Sbjct: 270 IVDSSDDAFEK 280


>gi|159464779|ref|XP_001690619.1| inactive subunit of chloroplast ClpP complex [Chlamydomonas
           reinhardtii]
 gi|158280119|gb|EDP05878.1| inactive subunit of chloroplast ClpP complex [Chlamydomonas
           reinhardtii]
          Length = 415

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 96/185 (51%), Gaps = 11/185 (5%)

Query: 42  ERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVV---------TAGMAI 92
           +RIV++   +   +  L+ A+LL+LE +     I + INS G            + G+A+
Sbjct: 59  QRIVYLGMPLVPAVTELMVAELLYLEKQGATLPIEMLINSSGTTRQDGEILSFDSEGVAL 118

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIE 152
             TM FIK PIST  MG A     ++LS G KG R +LP++  ++ QP    +GQ   IE
Sbjct: 119 TSTMGFIKNPISTVNMGLAVGWSCVVLSFGRKGWRKSLPHSLAMIQQPRVPPTGQRQAIE 178

Query: 153 RH--AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
            H   ++++  KR L  ++    G   ++++  + R   M   +A ++G++D+++    D
Sbjct: 179 VHIKWREVLDYKRELLRMFSLGTGLPVDKLDADMQRPLYMRPQDALEYGIIDEIIEPNED 238

Query: 211 IEEKS 215
             EK+
Sbjct: 239 KAEKA 243


>gi|221127124|ref|XP_002165386.1| PREDICTED: similar to Putative ATP-dependent Clp protease
          proteolytic subunit, mitochondrial [Hydra
          magnipapillata]
          Length = 95

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/65 (61%), Positives = 56/65 (86%)

Query: 19 VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
          VP+VVEQ+ R ER+YDIYSRLLKERIV + G I+D++++++ AQLLFL++E+ +K I +Y
Sbjct: 30 VPIVVEQSGRTERAYDIYSRLLKERIVCLFGGIDDNVSSVVVAQLLFLQSESRKKPIHMY 89

Query: 79 INSPG 83
          INSPG
Sbjct: 90 INSPG 94


>gi|255591869|ref|XP_002535618.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis]
 gi|223522515|gb|EEF26765.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis]
          Length = 95

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 60/87 (68%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           +RL +ER++F+   ++  ++  +   +++L  E+  K++ L+INSPGG V  G+AIYDTM
Sbjct: 6   NRLYRERLLFLGQDVDSEISNQLIGLMVYLSIESETKDLYLFINSPGGWVIPGIAIYDTM 65

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGE 123
           QF++P + T CMG AASM S +L  G+
Sbjct: 66  QFVRPDVQTVCMGLAASMASFILVGGK 92


>gi|108773081|ref|YP_635990.1| ATP-dependent Clp protease proteolytic subunit [Scenedesmus
           obliquus]
 gi|88696647|gb|ABD48273.1| proteolytic subunit 2 of clp protease [Scenedesmus obliquus]
          Length = 537

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/141 (37%), Positives = 83/141 (58%)

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           E   K++ + INS GG V  G+ I+D +QFIK    T  +G AAS  SL L+ G  G R+
Sbjct: 358 EEESKKVFMVINSFGGSVGNGITIHDALQFIKAGSMTLGLGVAASAASLALAGGTIGERY 417

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
                 +++HQP GG SGQASDI   +Q+I+KI+  + EIY  +  +   ++ + LDRD 
Sbjct: 418 VTEGCHVMMHQPEGGLSGQASDIWIDSQEILKIRLDVAEIYSLSTYRPRHKILRDLDRDF 477

Query: 189 IMSASEACDWGVVDKVLMSRI 209
            ++A E   +G+ D++  + +
Sbjct: 478 YLTAMETIYYGLADEIATNEV 498


>gi|237717659|ref|ZP_04548140.1| clp protease [Bacteroides sp. 2_2_4]
 gi|229453061|gb|EEO58852.1| clp protease [Bacteroides sp. 2_2_4]
          Length = 350

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/144 (35%), Positives = 83/144 (57%), Gaps = 8/144 (5%)

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE- 123
            +EAE+  ++I + INS GG +  GMAI++  +     I+ +  G AASMGS++ + G+ 
Sbjct: 49  LIEAESASRQIDVRINSIGGDIFTGMAIFNAFRQSAADITIYIDGVAASMGSVIAACGKP 108

Query: 124 -KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
            K  R+    AR+++H PSGG  G A ++E  A  +  ++  L EIY   C KT EE+  
Sbjct: 109 VKMSRY----ARLMVHSPSGGAYGNAGEMEETAGMLKSLEDTLCEIYAARCKKTKEEIRS 164

Query: 183 TL--DRDHIMSASEACDWGVVDKV 204
                +DH  +A +A + G+VD++
Sbjct: 165 EWFDGKDHWFTARQAVELGLVDEI 188


>gi|302838584|ref|XP_002950850.1| hypothetical protein VOLCADRAFT_74777 [Volvox carteri f.
           nagariensis]
 gi|300263967|gb|EFJ48165.1| hypothetical protein VOLCADRAFT_74777 [Volvox carteri f.
           nagariensis]
          Length = 421

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 95/185 (51%), Gaps = 11/185 (5%)

Query: 42  ERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVV---------TAGMAI 92
           +RIV++   +   +  L+ A+LL+LE +     I + INS G            + G+A+
Sbjct: 61  QRIVYLGMPLVPAVTELMVAELLYLEKQGATLPIEMLINSSGTTRQDGEILSFDSEGVAL 120

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIE 152
             TM F+K PIST  MG A     ++LS G KG R +LP++  ++ QP    +GQ   IE
Sbjct: 121 TSTMGFVKNPISTVNMGLAVGWSCVVLSFGRKGWRKSLPHSLAMIQQPRVPPTGQRQAIE 180

Query: 153 RH--AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
            H   ++++  KR L  +     G   ++++  + R   M   +A D+G++D+++    +
Sbjct: 181 VHIKWREVLDYKRELLRMMSIGTGLPVDKLDADMQRPLYMRPRDALDYGIIDEIIQPNAE 240

Query: 211 IEEKS 215
             EK+
Sbjct: 241 KAEKA 245


>gi|307108088|gb|EFN56329.1| hypothetical protein CHLNCDRAFT_144777 [Chlorella variabilis]
          Length = 315

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 98/191 (51%), Gaps = 28/191 (14%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------GVVTAGMAIY 93
           RIV++   +   +  LI A++L+L+ ++  K + LYINS G         G  T G AIY
Sbjct: 100 RIVYLGMPLVPAVTELIIAEMLYLQYKDRTKPMYLYINSTGTTRADGETVGFETEGTAIY 159

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG--QASDI 151
           DTM F+K  + T  +G A     +LLSAGEKG RF L +A  +LHQP    +G  QA +I
Sbjct: 160 DTMCFVKNEVHTVGVGVAIGQSCMLLSAGEKGKRFMLEHATAMLHQPRVPPTGQRQAIEI 219

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT-----------------LDRDHIMSASE 194
           +   ++++  K+ +  I  +  G + ++++K                  + R   M  ++
Sbjct: 220 QIKWREVLAQKQNMLAILSRTTGHSPDKLDKASAAGGGWWPGLALGAGDMQRPLYMQPAD 279

Query: 195 ACDWGVVDKVL 205
           A  +GV+D V+
Sbjct: 280 ALAYGVIDGVV 290


>gi|225223|prf||1211235BE ORF 74B
          Length = 74

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/71 (53%), Positives = 51/71 (71%)

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           +++L  E+  K++ L+INSPGG V  G+AIYDTMQF++P + T CMG AASMGS +L  G
Sbjct: 1   MVYLSIEDETKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVHTICMGLAASMGSFILVGG 60

Query: 123 EKGMRFALPNA 133
           E   R A P+A
Sbjct: 61  EITKRLAFPHA 71


>gi|32364338|gb|AAP80272.1| ATP-dependent Clp protease proteolytic subunit [Malus x domestica]
          Length = 120

 Score = 84.3 bits (207), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 42/102 (41%), Positives = 68/102 (66%), Gaps = 2/102 (1%)

Query: 105 TFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRR 164
           T C+G A ++ + LL+AGEKG RFA+P +RI L  P+G   GQA DI+  A ++++I+  
Sbjct: 1   THCVGYAYNLAAFLLTAGEKGNRFAMPLSRIALQSPAGAARGQADDIQNEANELLRIRDY 60

Query: 165 L-NEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           L NE+ +K  G+  E++ K L R    +A EA ++G++D+V+
Sbjct: 61  LFNELAMK-TGQPVEKINKDLSRMKRFNAQEALEYGLIDRVV 101


>gi|208751271|gb|ACI31244.1| ATP-dependent Clp protease proteolytic subunit [Volvox carteri]
 gi|261888159|gb|ACY06014.1| ATP-dependent Clp protease proteolytic subunit [Volvox carteri f.
           nagariensis]
          Length = 530

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 82/141 (58%)

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           E   K++ + INS GG V  G+ ++D +QFIK    T  +G AAS  SL L+ G  G R+
Sbjct: 351 EEESKKVFMIINSFGGSVGNGITVHDALQFIKAGSLTLALGVAASAASLALAGGTIGERY 410

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
                  ++HQP GG +GQASDI   +Q+I+KI+  + EIY  +  +   ++ + LDRD 
Sbjct: 411 VTEGCHTMIHQPEGGLNGQASDIWIDSQEIMKIRLDVAEIYSLSTYRPRHKILRDLDRDF 470

Query: 189 IMSASEACDWGVVDKVLMSRI 209
            ++A E   +G+ D++  + +
Sbjct: 471 YLTAMETIYYGLADEIATNEV 491


>gi|41179009|ref|NP_958364.1| ATP-dependent Clp protease proteolytic subunit [Chlamydomonas
           reinhardtii]
 gi|1168976|sp|P42380|CLPP_CHLRE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|567775|gb|AAA53086.1| Clp protease [Chlamydomonas reinhardtii]
 gi|28269732|tpg|DAA00910.1| TPA_inf: Clp protease proteolytic subunit [Chlamydomonas
           reinhardtii]
          Length = 524

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 82/141 (58%)

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           E   K++ + INS GG V  G+ ++D +QFIK    T  +G AAS  SL L+ G  G R+
Sbjct: 343 EEESKKVFMIINSFGGSVGNGITVHDALQFIKAGSLTLALGVAASAASLALAGGTIGERY 402

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
                  ++HQP GG +GQASDI   +Q+I+KI+  + EIY  +  +   ++ + LDRD 
Sbjct: 403 VTEGCHTMIHQPEGGLNGQASDIWIDSQEIMKIRLDVAEIYSLSTYRPRHKILRDLDRDF 462

Query: 189 IMSASEACDWGVVDKVLMSRI 209
            ++A E   +G+ D++  + +
Sbjct: 463 YLTAMETIYYGLADEIATNEV 483


>gi|213517391|gb|ACJ50097.1| ATP-dependent Clp protease proteolytic subunit [Chlamydomonas
           reinhardtii]
          Length = 524

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 82/141 (58%)

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           E   K++ + INS GG V  G+ ++D +QFIK    T  +G AAS  SL L+ G  G R+
Sbjct: 343 EEESKKVFMIINSFGGSVGNGITVHDALQFIKAGSLTLALGVAASAASLALAGGTIGERY 402

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
                  ++HQP GG +GQASDI   +Q+I+KI+  + EIY  +  +   ++ + LDRD 
Sbjct: 403 VTEGCHTMIHQPEGGLNGQASDIWIDSQEIMKIRLDVAEIYSLSTYRPRHKILRDLDRDF 462

Query: 189 IMSASEACDWGVVDKVLMSRI 209
            ++A E   +G+ D++  + +
Sbjct: 463 YLTAMETIYYGLADEIATNEV 483


>gi|189463031|ref|ZP_03011816.1| hypothetical protein BACCOP_03733 [Bacteroides coprocola DSM 17136]
 gi|198276521|ref|ZP_03209052.1| hypothetical protein BACPLE_02716 [Bacteroides plebeius DSM 17135]
 gi|237708586|ref|ZP_04539067.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|260642222|ref|ZP_05414941.2| putative prophage L54a, Clp protease [Bacteroides finegoldii DSM
           17565]
 gi|189430313|gb|EDU99297.1| hypothetical protein BACCOP_03733 [Bacteroides coprocola DSM 17136]
 gi|198270609|gb|EDY94879.1| hypothetical protein BACPLE_02716 [Bacteroides plebeius DSM 17135]
 gi|229457515|gb|EEO63236.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|260623181|gb|EEX46052.1| putative prophage L54a, Clp protease [Bacteroides finegoldii DSM
           17565]
          Length = 368

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 94/164 (57%), Gaps = 7/164 (4%)

Query: 45  VFVTGQIEDH--MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           +F+ G I D+  + +   AQ L +EAE   + I + INS GG V +G+AI++ ++  +  
Sbjct: 39  IFLYGDIGDYTEVQSGRIAQEL-MEAERVSRRIHVRINSNGGEVYSGIAIFNALRHSQAD 97

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIK 162
           I  +  G AASM S++   G K +  +   AR++LH  SGG  G   D++R  ++I  ++
Sbjct: 98  IRIYVDGIAASMASVIALCG-KPVEMS-KYARLMLHSVSGGCYGNKQDLQRCMEEIESLE 155

Query: 163 RRLNEIYVKNCGKTYEEVEKTL--DRDHIMSASEACDWGVVDKV 204
             L+EIY +  G + EEV++T     DH ++A EA D G +D +
Sbjct: 156 GSLSEIYAERLGMSKEEVKQTYFDGEDHWLTAKEALDLGFIDDI 199


>gi|146319205|ref|YP_001198917.1| putative ATP-dependent Clp protease, proteolytic subunit
          [Streptococcus suis 05ZYH33]
 gi|145690011|gb|ABP90517.1| putative ATP-dependent Clp protease, proteolytic subunit
          [Streptococcus suis 05ZYH33]
          Length = 57

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/54 (66%), Positives = 47/54 (87%)

Query: 18 LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
          ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  I AQLLFL+A  P
Sbjct: 1  MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAPRP 54


>gi|242091575|ref|XP_002441620.1| hypothetical protein SORBIDRAFT_09g030550 [Sorghum bicolor]
 gi|241946905|gb|EES20050.1| hypothetical protein SORBIDRAFT_09g030550 [Sorghum bicolor]
          Length = 388

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 88/184 (47%), Gaps = 10/184 (5%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV-------- 85
           D+ S LL  RI+F+   I   +  LI AQ L+L+ ++  K I LYINS G +        
Sbjct: 164 DLPSLLLDSRIIFLGMPIVPAVTELIAAQFLWLDYDDRTKPIYLYINSTGTMDENNELVA 223

Query: 86  -VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
             T   AI D +   K  + T  +  A    ++LLS G KG R  LPN+   LH P    
Sbjct: 224 SETDAYAIADFINRSKSKVYTINLSMAYGQAAMLLSLGVKGKRGVLPNSITKLHLPKVHK 283

Query: 145 SGQAS-DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
           SG A+ D+   A+++        E+  K  GK  EE+ + L       A EA D+G+ D 
Sbjct: 284 SGGAAIDMWIKAKELDTNTDYYLELLSKGVGKPKEELAEFLKGPRYFRAQEAIDYGLADT 343

Query: 204 VLMS 207
           +L S
Sbjct: 344 ILHS 347


>gi|194706198|gb|ACF87183.1| unknown [Zea mays]
          Length = 301

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 88/184 (47%), Gaps = 10/184 (5%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV-------- 85
           D+ S LL  RI+F+   I   +  LI AQ L+L+ ++  K I LYINS G +        
Sbjct: 77  DLPSLLLDSRIIFLGMPIVPAVTELIAAQFLWLDYDDRTKPIYLYINSTGTMDENNELVA 136

Query: 86  -VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
             T   AI D +   K  + T  +  A    ++LLS G KG R  LPN+   LH P    
Sbjct: 137 SETDAYAIADFINRSKSKVYTINLSMAYGQAAMLLSLGVKGKRGVLPNSITKLHLPKVHK 196

Query: 145 SGQAS-DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
           SG A+ D+   A+++        E+  K  GK  EE+ + L       A EA D+G+ D 
Sbjct: 197 SGGAAIDMWIKAKELDTNTDYYLELLSKGVGKPKEELAEFLRGPRYFRAQEALDYGLADT 256

Query: 204 VLMS 207
           +L S
Sbjct: 257 ILHS 260


>gi|326505514|dbj|BAJ95428.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 386

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 88/184 (47%), Gaps = 10/184 (5%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV-------- 85
           D+ S LL  RI+F+   I   +  LI AQ L+L+ ++  K I LYINS G +        
Sbjct: 163 DLPSLLLDSRIIFLGMPIVPAVTELIAAQFLWLDYDDRTKPIYLYINSTGTMDENNELVA 222

Query: 86  -VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
             T   AI D +   K  + T  +  A    ++LLS G KG R  LPN+   LH P    
Sbjct: 223 SETDAYAIADFINRSKAKVYTINLSMAYGQAAMLLSLGMKGKRGVLPNSITKLHLPKVHK 282

Query: 145 SGQAS-DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
           SG A+ D+   A+++        E+  K  GK  EE+ + L       A EA D+G+ D 
Sbjct: 283 SGGAAIDMWIKAKELETNTDYYLELVSKGVGKPKEELAEFLRGPRYFRAQEAIDYGLADT 342

Query: 204 VLMS 207
           +L S
Sbjct: 343 ILHS 346


>gi|226529349|ref|NP_001141859.1| hypothetical protein LOC100274001 [Zea mays]
 gi|194689706|gb|ACF78937.1| unknown [Zea mays]
          Length = 388

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 88/184 (47%), Gaps = 10/184 (5%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV-------- 85
           D+ S LL  RI+F+   I   +  LI AQ L+L+ ++  K I LYINS G +        
Sbjct: 164 DLPSLLLDSRIIFLGMPIVPAVTELIAAQFLWLDYDDRTKPIYLYINSTGTMDENNELVA 223

Query: 86  -VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
             T   AI D +   K  + T  +  A    ++LLS G KG R  LPN+   LH P    
Sbjct: 224 SETDAYAIADFINRSKSKVYTINLSMAYGQAAMLLSLGVKGKRGVLPNSITKLHLPKVHK 283

Query: 145 SGQAS-DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
           SG A+ D+   A+++        E+  K  GK  EE+ + L       A EA D+G+ D 
Sbjct: 284 SGGAAIDMWIKAKELDTNTDYYLELLSKGVGKPKEELAEFLRGPRYFRAQEALDYGLADT 343

Query: 204 VLMS 207
           +L S
Sbjct: 344 ILHS 347


>gi|218197363|gb|EEC79790.1| hypothetical protein OsI_21214 [Oryza sativa Indica Group]
          Length = 386

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/184 (34%), Positives = 90/184 (48%), Gaps = 10/184 (5%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG------GVV- 86
           D+ S LL  RI+F+   I   +  LI AQ L+L+ ++  K I LYINS G      G+V 
Sbjct: 162 DLPSLLLDSRIIFLGMPIVPAVTELIAAQFLWLDYDDRTKPIYLYINSTGTMDENNGLVA 221

Query: 87  --TAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
             T   AI D +   K  + T  +  A    ++LLS G KG R  LPN+   L+ P    
Sbjct: 222 SETDAFAIADFINRSKSKVYTINLSMAYGQAAMLLSLGVKGKRGVLPNSITKLYLPKVHK 281

Query: 145 SGQAS-DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
           SG A+ D+   A+++        E+  K  GK  EE+ + L       A EA D+G+ D 
Sbjct: 282 SGGAAIDMWIKAKELDTNTDYYLELLSKGVGKPKEELAEFLKGPRYFRAQEAIDYGLADT 341

Query: 204 VLMS 207
           +L S
Sbjct: 342 ILHS 345


>gi|195650193|gb|ACG44564.1| endopeptidase Clp [Zea mays]
          Length = 388

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 88/184 (47%), Gaps = 10/184 (5%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV-------- 85
           D+ S LL  RI+F+   I   +  LI AQ L+L+ ++  K I LYINS G +        
Sbjct: 164 DLPSLLLDSRIIFLGMPIVPAVTELIAAQFLWLDYDDRTKPIYLYINSTGTMDENNELVA 223

Query: 86  -VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
             T   AI D +   K  + T  +  A    ++LLS G KG R  LPN+   LH P    
Sbjct: 224 SETDAYAIADFINRSKSKVYTINLSMAYGQAAMLLSLGVKGKRGVLPNSITKLHLPKVHK 283

Query: 145 SGQAS-DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
           SG A+ D+   A+++        E+  K  GK  EE+ + L       A EA D+G+ D 
Sbjct: 284 SGGAAIDMWIKAKELDTNTDYYLELLSKGVGKPKEELAEFLRGPRYFRAQEALDYGLADT 343

Query: 204 VLMS 207
           +L S
Sbjct: 344 ILHS 347


>gi|325115097|emb|CBZ50653.1| atp-dependent Clp protease proteolytic subunit,related [Neospora
           caninum Liverpool]
          Length = 291

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 22/153 (14%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           + + INSPGG VTA + I D  Q +   + T C+GQAA + ++LL+AG  G R A P++R
Sbjct: 122 VDILINSPGGSVTAALGILDLFQSLPFDVHTTCVGQAAGVAAMLLAAGTPGCRRAFPSSR 181

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCG-------------------- 174
           + L Q  G   GQA  I+R   +I  ++R +       C                     
Sbjct: 182 LSLRQIEGRVEGQAEAIDRETLEIENVQRMVYRHLAAFCTGRQARRDEREQEREQERERQ 241

Query: 175 --KTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
             K  + + +  +++  +SA EA  +G++D+V+
Sbjct: 242 IEKREKAIREDCEKELFLSAGEAVKYGLIDRVI 274


>gi|323449361|gb|EGB05250.1| hypothetical protein AURANDRAFT_9147 [Aureococcus anophagefferens]
          Length = 57

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 45/57 (78%)

Query: 53  DHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMG 109
           D +A ++ AQLL+L  ++P K+I+LYINSPGG V+AGMAIYDTMQF+   +ST C G
Sbjct: 1   DEVANVLVAQLLYLANDDPTKDITLYINSPGGSVSAGMAIYDTMQFVPCDVSTVCFG 57


>gi|296085709|emb|CBI29508.3| unnamed protein product [Vitis vinifera]
          Length = 169

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 73/133 (54%), Gaps = 8/133 (6%)

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ--------PS 141
           +AI    +++K  I T C+G      +LLL AG KG R ALP++ I+L Q        P 
Sbjct: 25  LAIIFCCRYVKSLIFTLCVGNPWGEAALLLVAGAKGNRSALPSSTIMLKQSCPPINLHPI 84

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
               GQA+DI+   +++  +K  L ++Y K+ GK+ E++E  + R    S SE  ++ ++
Sbjct: 85  ARLQGQATDIDLARKEVKNVKAELVKLYAKHVGKSPEQIEADIRRPKYFSPSEGVEYSII 144

Query: 202 DKVLMSRIDIEEK 214
           DKVL +    E++
Sbjct: 145 DKVLYNERSSEDR 157


>gi|77409464|ref|ZP_00786157.1| Clp protease [Streptococcus agalactiae COH1]
 gi|77171931|gb|EAO75107.1| Clp protease [Streptococcus agalactiae COH1]
          Length = 106

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 61/100 (61%), Gaps = 2/100 (2%)

Query: 108 MGQAASMGSLLLSAGEKGMRFALPNARILLHQP--SGGFSGQASDIERHAQDIVKIKRRL 165
           MG AASMG+++ S+G KG RF LPNA  ++HQP    G   Q SD+   A+ ++K +  L
Sbjct: 1   MGMAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQSDMAIAAEHLLKTRHTL 60

Query: 166 NEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            +I   N G++ E+V    +RD  MSA E  D+G +D ++
Sbjct: 61  EKILADNSGQSIEKVHDDAERDRWMSAQETLDYGFIDAIM 100


>gi|169838667|ref|ZP_02871855.1| ATP-dependent Clp protease proteolytic subunit [candidate
          division TM7 single-cell isolate TM7a]
          Length = 65

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 34/51 (66%), Positives = 44/51 (86%)

Query: 20 PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
          P+V+E   RGERSYDIYSRLLK+RI+FV+G++ED MA  I AQLLFL+A++
Sbjct: 14 PVVIENDGRGERSYDIYSRLLKDRIIFVSGEVEDGMANAIVAQLLFLDAQD 64


>gi|300214522|gb|ADJ78938.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           salivarius CECT 5713]
          Length = 234

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 82/138 (59%), Gaps = 4/138 (2%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K I+L+INSPGG V  G+AI++ ++  K  I+ +  G AAS+ S++  +G+    F   N
Sbjct: 43  KTINLHINSPGGSVFEGIAIHNMLKMNKAKINVYVDGLAASIASVIAMSGD--TIFMPEN 100

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYV-KNCGKTYEE-VEKTLDRDHIM 190
           + +++H P     G + ++ + A D+ +I +   + Y+ K+ GK  EE + K LD +  +
Sbjct: 101 SMLMIHNPWTVAMGNSKELRKQADDLDRIAQASVKTYLSKSNGKIDEETLVKLLDEETWL 160

Query: 191 SASEACDWGVVDKVLMSR 208
           SA EA D+G+ D+VL S 
Sbjct: 161 SAQEAVDYGLADEVLESN 178


>gi|90961762|ref|YP_535678.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus phage
           Sal1]
 gi|90820956|gb|ABD99595.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus phage
           Sal1]
          Length = 249

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 82/138 (59%), Gaps = 4/138 (2%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K I+L+INSPGG V  G+AI++ ++  K  I+ +  G AAS+ S++  +G+    F   N
Sbjct: 58  KTINLHINSPGGSVFEGIAIHNMLKMNKAKINVYVDGLAASIASVIAMSGD--TIFMPEN 115

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYV-KNCGKTYEE-VEKTLDRDHIM 190
           + +++H P     G + ++ + A D+ +I +   + Y+ K+ GK  EE + K LD +  +
Sbjct: 116 SMLMIHNPWTVAMGNSKELRKQADDLDRIAQASVKTYLSKSNGKIDEETLVKLLDEETWL 175

Query: 191 SASEACDWGVVDKVLMSR 208
           SA EA D+G+ D+VL S 
Sbjct: 176 SAQEAVDYGLADEVLESN 193


>gi|301300713|ref|ZP_07206898.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300851651|gb|EFK79350.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 234

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 82/138 (59%), Gaps = 4/138 (2%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K I+L+INSPGG V  G+AI++ ++  K  I+ +  G AAS+ S++  +G+    F   N
Sbjct: 43  KTINLHINSPGGSVFEGIAIHNMLKMHKAKINVYVDGLAASIASVIAMSGD--TIFMPEN 100

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYV-KNCGKTYEE-VEKTLDRDHIM 190
           + +++H P     G + ++ + A D+ +I +   + Y+ K+ GK  EE + K LD +  +
Sbjct: 101 SMLMIHNPWTVAMGNSKELRKQADDLDRIAQMSVKTYLSKSNGKIDEETLVKLLDEETWL 160

Query: 191 SASEACDWGVVDKVLMSR 208
           SA EA D+G+ D+VL S 
Sbjct: 161 SAQEAVDYGLADEVLESN 178


>gi|115465787|ref|NP_001056493.1| Os05g0592100 [Oryza sativa Japonica Group]
 gi|48475230|gb|AAT44299.1| unknown protein [Oryza sativa Japonica Group]
 gi|113580044|dbj|BAF18407.1| Os05g0592100 [Oryza sativa Japonica Group]
 gi|215701013|dbj|BAG92437.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222632764|gb|EEE64896.1| hypothetical protein OsJ_19755 [Oryza sativa Japonica Group]
          Length = 386

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 88/184 (47%), Gaps = 10/184 (5%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV-------- 85
           D+ S LL  RI+F+   I   +  LI AQ L+L+ ++  K I LYINS G +        
Sbjct: 162 DLPSLLLDSRIIFLGMPIVPAVTELIAAQFLWLDYDDRTKPIYLYINSTGTMDENNELVA 221

Query: 86  -VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
             T   AI D +   K  + T  +  A    ++LLS G KG R  LPN+   L+ P    
Sbjct: 222 SETDAFAIADFINRSKSKVYTINLSMAYGQAAMLLSLGVKGKRGVLPNSITKLYLPKVHK 281

Query: 145 SGQAS-DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
           SG A+ D+   A+++        E+  K  GK  EE+ + L       A EA D+G+ D 
Sbjct: 282 SGGAAIDMWIKAKELDTNTDYYLELLSKGVGKPKEELAEFLKGPRYFRAQEAIDYGLADT 341

Query: 204 VLMS 207
           +L S
Sbjct: 342 ILHS 345


>gi|163119655|ref|YP_080707.2| ATP-dependent protease proteolytic subunit [Bacillus licheniformis
           ATCC 14580]
 gi|145903165|gb|AAU25069.2| ATP-dependent protease proteolytic subunit (class III heat-shock
           protein) [Bacillus licheniformis ATCC 14580]
          Length = 230

 Score = 78.2 bits (191), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 76/137 (55%), Gaps = 6/137 (4%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I LYINSPGG V  G AI+  +Q  K  I+ +    A S+ S++  AG+K     +P NA
Sbjct: 44  IDLYINSPGGDVFEGQAIHSMLQRHKAKINVYVDALAGSIASVIAMAGDK---ITMPSNA 100

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE--VEKTLDRDHIMS 191
            +++H P  G  G A++  + A D+ KI   +   Y+   G   ++  + + LD +  ++
Sbjct: 101 MMMIHNPYMGMVGNAAEFRKAADDLDKITESIVSTYLAKAGDKLDDGTLRQLLDEETWLT 160

Query: 192 ASEACDWGVVDKVLMSR 208
           A EA ++G++D+V  S+
Sbjct: 161 ADEALNYGLIDEVSESK 177


>gi|52787302|ref|YP_093131.1| hypothetical protein BLi03615 [Bacillus licheniformis ATCC 14580]
 gi|52349804|gb|AAU42438.1| ClpP [Bacillus licheniformis ATCC 14580]
          Length = 243

 Score = 78.2 bits (191), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 76/137 (55%), Gaps = 6/137 (4%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I LYINSPGG V  G AI+  +Q  K  I+ +    A S+ S++  AG+K     +P NA
Sbjct: 57  IDLYINSPGGDVFEGQAIHSMLQRHKAKINVYVDALAGSIASVIAMAGDK---ITMPSNA 113

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE--VEKTLDRDHIMS 191
            +++H P  G  G A++  + A D+ KI   +   Y+   G   ++  + + LD +  ++
Sbjct: 114 MMMIHNPYMGMVGNAAEFRKAADDLDKITESIVSTYLAKAGDKLDDGTLRQLLDEETWLT 173

Query: 192 ASEACDWGVVDKVLMSR 208
           A EA ++G++D+V  S+
Sbjct: 174 ADEALNYGLIDEVSESK 190


>gi|225467642|ref|XP_002267289.1| PREDICTED: similar to ATP-dependent Clp protease proteolytic
           subunit, putative, partial [Vitis vinifera]
          Length = 137

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 69/125 (55%), Gaps = 8/125 (6%)

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ--------PSGGFSGQAS 149
           ++K  I T C+G      +LLL AG KG R ALP++ I+L Q        P     GQA+
Sbjct: 1   YVKSLIFTLCVGNPWGEAALLLVAGAKGNRSALPSSTIMLKQSCPPINLHPIARLQGQAT 60

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           DI+   +++  +K  L ++Y K+ GK+ E++E  + R    S SE  ++ ++DKVL +  
Sbjct: 61  DIDLARKEVKNVKAELVKLYAKHVGKSPEQIEADIRRPKYFSPSEGVEYSIIDKVLYNER 120

Query: 210 DIEEK 214
             E++
Sbjct: 121 SSEDR 125


>gi|300933496|ref|ZP_07148752.1| Endopeptidase Clp [Corynebacterium resistens DSM 45100]
          Length = 74

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 47/64 (73%)

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
           +AIYDTM+FIKP I+T C+ QA S+G++LL+AG  G R ALP+ARI+LHQP+    G   
Sbjct: 2   LAIYDTMKFIKPSIATTCVAQAVSVGAVLLTAGAPGKRAALPHARIVLHQPAAQSRGTIP 61

Query: 150 DIER 153
            + R
Sbjct: 62  HLIR 65


>gi|262174040|ref|ZP_06041716.1| prophage Clp protease-like protein [Vibrio mimicus MB-451]
 gi|261890220|gb|EEY36208.1| prophage Clp protease-like protein [Vibrio mimicus MB-451]
          Length = 677

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 75/140 (53%), Gaps = 4/140 (2%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L++    + I L I+SPGG V  GM IY+ +      I+ +  G AASM S++   G+  
Sbjct: 46  LKSRGDVRNIVLRIHSPGGDVFEGMVIYNLLNQHPAYITVYIDGLAASMASVIAMVGDV- 104

Query: 126 MRFALP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
               +P NA I++H+P G   G A D+ R+A  + +++  L   Y K  GKT EE+++ L
Sbjct: 105 --VIIPMNAAIMIHKPWGIQGGDADDMRRYADLLDQVEDSLVSAYTKKTGKTVEEIKQLL 162

Query: 185 DRDHIMSASEACDWGVVDKV 204
           D +  M   EA + G  D V
Sbjct: 163 DAETWMFGQEAVELGFADMV 182


>gi|323345140|ref|ZP_08085364.1| ATP-dependent Clp protease, protease subunit [Prevotella oralis
           ATCC 33269]
 gi|323094410|gb|EFZ36987.1| ATP-dependent Clp protease, protease subunit [Prevotella oralis
           ATCC 33269]
          Length = 352

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 87/160 (54%), Gaps = 10/160 (6%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM 108
           G+ ED  +T I  +LL  +AE   K I + INS GG V AG+AI++ ++  K  +  F  
Sbjct: 25  GEYEDVRSTDITRELL--QAEATYKNIDVRINSIGGEVYAGIAIFNALKNCKADVRIFID 82

Query: 109 GQAASMGSLLLSAGE--KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLN 166
           G AASM S++   G   +  R+    AR++LH P GG  G  S++     D+  ++  L 
Sbjct: 83  GIAASMASVIALCGRHVEMSRY----ARLMLHSPYGGCWGNKSEMATCISDLEALEDTLC 138

Query: 167 EIYVKNCGKTYEEVE-KTLD-RDHIMSASEACDWGVVDKV 204
            +  K  G T EEV+ +  D +DH ++A +A D G +D +
Sbjct: 139 AMCAKRIGLTEEEVKARYFDGQDHWLTAQQALDAGFIDAI 178


>gi|186914928|gb|ACC95221.1| ClpP [Eudianthe laeta]
          Length = 99

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 58/95 (61%), Gaps = 1/95 (1%)

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIERHAQDIVKIKRRLNEIY 169
           AASMGS +L  GE   R A P+AR+++HQP+  F   Q  +    A++++K++  L  +Y
Sbjct: 2   AASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFILEAEELLKLRETLTRVY 61

Query: 170 VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           V+  GK    V + ++RD  MSA+EA   G+VD V
Sbjct: 62  VQRTGKPIWVVSEDMERDVFMSAAEAQAHGIVDLV 96


>gi|187251362|ref|YP_001875844.1| Clp protease [Elusimicrobium minutum Pei191]
 gi|186971522|gb|ACC98507.1| Clp protease [Elusimicrobium minutum Pei191]
          Length = 355

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 87/172 (50%), Gaps = 7/172 (4%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFL-EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP 101
           R +++T  I    AT I AQ+  + E     + I +Y+N  GG  TA   I D M     
Sbjct: 3   REIYITADISKETATDIVAQIKAMSEGIGANQPIKMYVNCFGGSATAMFTILDAMATCPC 62

Query: 102 PISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP--SGGFSGQA-SDIERHAQDI 158
            I T  +G+A S  +L+ SAG K  RF   N+R+++H+   S  +S +  S IE   ++ 
Sbjct: 63  EIITVNLGEADSAAALIFSAGSK--RFITENSRVMIHEVRLSTLYSAEPLSQIEAELKEF 120

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEK-TLDRDHIMSASEACDWGVVDKVLMSRI 209
             +   + +   KN GK  EE++     +D  +SA EA ++G+ D +L + I
Sbjct: 121 QILNDNMFKALAKNTGKKPEEIKADVFGKDLYLSAEEAIEYGLADAILTTEI 172


>gi|225466368|ref|XP_002276419.1| PREDICTED: similar to ATP-dependent Clp protease proteolytic
           subunit, putative, partial [Vitis vinifera]
          Length = 129

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/107 (40%), Positives = 70/107 (65%)

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
           ++K PI T C+G A    +LLL+AG KG R ALP++ I++ QP   F GQA+DI+   ++
Sbjct: 1   YVKSPIFTLCVGNAWGEAALLLAAGAKGNRSALPSSTIMIKQPIARFQGQATDIDLARKE 60

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           +  +K  L ++Y K+ GK+ +++E  + R    S SEA ++G++DKV
Sbjct: 61  VKNVKAELVKLYAKHIGKSPDQIEADIRRPKYFSPSEAVEYGIIDKV 107


>gi|56419065|ref|YP_146383.1| serine protease [Geobacillus kaustophilus HTA426]
 gi|56378907|dbj|BAD74815.1| serine protease (phage related-protein, ClpP family) [Geobacillus
           kaustophilus HTA426]
          Length = 255

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 82/143 (57%), Gaps = 6/143 (4%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L+A      I+LYINSPGG V  G+AI++ ++  K  I+ +    AAS+ S++  AG+  
Sbjct: 49  LDAVGDVDTINLYINSPGGNVFEGVAIHNMLKRHKAKINVYVDALAASIASVIAMAGD-- 106

Query: 126 MRFALP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK--TYEEVEK 182
               +P NA +++H P     G A+++ + A D+ +I   + + Y++  G   T E++++
Sbjct: 107 -TIHMPKNAMLMIHNPWTWTYGNAAELRKVADDLDRIGNSIKQTYLQKAGDKLTEEKLQE 165

Query: 183 TLDRDHIMSASEACDWGVVDKVL 205
            LD +  +SA EA + G+ D VL
Sbjct: 166 MLDAETWLSADEAYEHGLCDVVL 188


>gi|55792477|gb|AAV65338.1| plastid catalytic subunit of ClpP5 protease [Prototheca
           wickerhamii]
          Length = 251

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 64/114 (56%), Gaps = 9/114 (7%)

Query: 29  GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG----- 83
           G    D+ S LL  RI ++   +   +  L+ ++LL+L   +P K + +YINS G     
Sbjct: 138 GRAPPDLPSLLLDGRICYIGMPLVPAVTELVISELLWLNYSSPTKPVYVYINSTGSQREG 197

Query: 84  ----GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
               G  T   AI DTM +I+P I T  +GQA    ++LL++G+KG RFALP++
Sbjct: 198 GESVGFETEATAIMDTMAYIRPDIYTLVIGQACGNAAMLLASGKKGHRFALPHS 251


>gi|255013782|ref|ZP_05285908.1| serine protease [Bacteroides sp. 2_1_7]
          Length = 343

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 82/158 (51%), Gaps = 6/158 (3%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM 108
           G+  D  A  I  +L+  EAE   K I + INS GG V  G+AI++ ++  K  I  +  
Sbjct: 23  GEYSDVTAAAIVRELM--EAEASGKRIDVRINSNGGDVYTGIAIFNALRGSKADIHIYVD 80

Query: 109 GQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           G AASM S++   G K +  +   AR++LH  SGG  G  +++ R  +++  ++  L E+
Sbjct: 81  GIAASMASVIALCG-KPVEMS-KYARLMLHSVSGGCYGNKTELRRCLEEVEALENTLCEM 138

Query: 169 YVKNCGKTYEEVEKTL--DRDHIMSASEACDWGVVDKV 204
           Y    G + EE+      D DH + A EA   G +D V
Sbjct: 139 YAPRLGTSVEEIRARYFDDADHWLKADEALALGFIDGV 176


>gi|156306210|ref|XP_001617564.1| hypothetical protein NEMVEDRAFT_v1g157296 [Nematostella vectensis]
 gi|156194583|gb|EDO25464.1| predicted protein [Nematostella vectensis]
          Length = 87

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 53/73 (72%)

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           +RI++HQP GG  GQASDIE  A++I K+K+ L EI   + G+   +VEK  DRD+ M+A
Sbjct: 1   SRIMIHQPLGGAEGQASDIEITAREIGKLKKELYEIIAHHSGQKLAKVEKDSDRDYWMTA 60

Query: 193 SEACDWGVVDKVL 205
            EA D+G++D+VL
Sbjct: 61  QEAKDYGMIDEVL 73


>gi|301168948|emb|CBW28543.1| atp-dependent clp protease proteolytic subunit [Haemophilus
           influenzae 10810]
          Length = 662

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 77/136 (56%), Gaps = 4/136 (2%)

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           N  K+I+L+I+SPGG V  G+AIY+ ++     ++ +  G AASM S++  AG +     
Sbjct: 45  NNLKQINLHIHSPGGDVFDGIAIYNLLKNHPANVTVYIDGLAASMASVIAMAGNE---VI 101

Query: 130 LP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +P NA +++H+P G   G A D+ ++A  + K++  L   Y    GKT EE+ + L  + 
Sbjct: 102 MPENAMMMIHKPWGIQGGDAEDMRKYADLLDKVENTLIPAYASKTGKTPEELAEMLSAET 161

Query: 189 IMSASEACDWGVVDKV 204
            ++  E  + G  DK+
Sbjct: 162 WLNGKECVEQGFADKL 177


>gi|145629849|ref|ZP_01785642.1| putative Clp-like protease [Haemophilus influenzae 22.1-21]
 gi|144977753|gb|EDJ87697.1| putative Clp-like protease [Haemophilus influenzae 22.1-21]
          Length = 680

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 77/136 (56%), Gaps = 4/136 (2%)

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           N  K+I+L+I+SPGG V  G+AIY+ ++     ++ +  G AASM S++  AG +     
Sbjct: 63  NNIKQINLHIHSPGGDVFDGIAIYNLLKNHPANVTVYIDGLAASMASVIAMAGNE---VI 119

Query: 130 LP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +P NA +++H+P G   G A D+ ++A  + K++  L   Y    GKT EE+ + L  + 
Sbjct: 120 MPENAMMMIHKPWGIQGGDAEDMRKYADLLDKVENTLIPAYASKTGKTPEELAEMLSAET 179

Query: 189 IMSASEACDWGVVDKV 204
            ++  E  + G  DK+
Sbjct: 180 WLNGKECVEQGFADKL 195


>gi|145640030|ref|ZP_01795627.1| putative Clp-like protease [Haemophilus influenzae PittII]
 gi|145270863|gb|EDK10783.1| putative Clp-like protease [Haemophilus influenzae PittII]
          Length = 680

 Score = 74.7 bits (182), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 77/136 (56%), Gaps = 4/136 (2%)

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           N  K+I+L+I+SPGG V  G+AIY+ ++     ++ +  G AASM S++  AG +     
Sbjct: 63  NNIKQINLHIHSPGGDVFDGIAIYNLLKNHPANVTVYIDGLAASMASVIAMAGNE---VI 119

Query: 130 LP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +P NA +++H+P G   G A D+ ++A  + K++  L   Y    GKT EE+ + L  + 
Sbjct: 120 MPENAMMMIHKPWGIQGGDAEDMRKYADLLDKVENTLIPAYASKTGKTPEELAEMLSAET 179

Query: 189 IMSASEACDWGVVDKV 204
            ++  E  + G  DK+
Sbjct: 180 WLNGKECVEQGFADKL 195


>gi|293433601|ref|ZP_06662029.1| prophage Clp protease-like protein [Escherichia coli B088]
 gi|291324420|gb|EFE63842.1| prophage Clp protease-like protein [Escherichia coli B088]
          Length = 686

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 73/131 (55%), Gaps = 4/131 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++  AG+      +P NA
Sbjct: 75  INLHINSPGGDVFEGIAIFNALKNQGATITVYVDGVAASMASVIAMAGDT---VIMPENA 131

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H+P G   G A D+  +A  + KI+  L   Y +  GKT +E+   L  +  MS +
Sbjct: 132 FMMIHKPWGFSEGDAEDMRSYADLLDKIESVLLPAYAQKTGKTTDEIAAMLADETWMSGA 191

Query: 194 EACDWGVVDKV 204
           E    G  D+V
Sbjct: 192 ECLAHGFADQV 202


>gi|194430149|ref|ZP_03062651.1| peptidase S14, ClpP [Escherichia coli B171]
 gi|194411813|gb|EDX28133.1| peptidase S14, ClpP [Escherichia coli B171]
 gi|323159483|gb|EFZ45464.1| clp protease family protein [Escherichia coli E128010]
          Length = 651

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 74/131 (56%), Gaps = 4/131 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I+L+INSPGG V  G+AI++ ++     I+ +  G AASM SL+  AG+      +P NA
Sbjct: 40  INLHINSPGGDVFEGIAIFNALKNHGAAITVYVDGVAASMASLIAMAGDT---VIMPENA 96

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H+P G   G A  +  +A+ + K++  +  +Y +  GKT +E+   L  +  MS +
Sbjct: 97  FMMIHKPWGISGGDAEKMRTYAERLDKLESVMVPVYAQKTGKTTDEIAAMLADETWMSGA 156

Query: 194 EACDWGVVDKV 204
           E    G  D+V
Sbjct: 157 ECLAHGFADQV 167


>gi|327253812|gb|EGE65441.1| clp protease family protein [Escherichia coli STEC_7v]
          Length = 651

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 74/131 (56%), Gaps = 4/131 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I+L+INSPGG V  G+AI++ ++     I+ +  G AASM SL+  AG+      +P NA
Sbjct: 40  INLHINSPGGDVFEGIAIFNALKNHGAAITVYVDGVAASMASLIAMAGDT---VIMPENA 96

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H+P G   G A  +  +A+ + K++  +  +Y +  GKT +E+   L  +  MS +
Sbjct: 97  FMMIHKPWGISGGDAEKMRTYAERLDKLESVMVPVYAQKTGKTTDEIAAMLADETWMSGA 156

Query: 194 EACDWGVVDKV 204
           E    G  D+V
Sbjct: 157 ECLAHGFADQV 167


>gi|300853555|ref|YP_003778539.1| phage related protease [Clostridium ljungdahlii DSM 13528]
 gi|300433670|gb|ADK13437.1| phage related protease [Clostridium ljungdahlii DSM 13528]
          Length = 279

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 72/133 (54%), Gaps = 4/133 (3%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP- 131
           K +++YINS GG V AG AIY  ++     ++ +  G AAS+ S++  AG+      +P 
Sbjct: 53  KTLNVYINSGGGDVFAGQAIYSMLKRHSATVNVYVDGLAASIASIIAMAGD---SVKMPK 109

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           NA +++H P     G A D  + A D+ K++  +  +Y    G   E + + LD +  M+
Sbjct: 110 NAMLMVHNPWSYAMGNAKDFRKLADDLDKVRESMISVYEDKTGMEKESIVELLDAETWMT 169

Query: 192 ASEACDWGVVDKV 204
           A EA ++G  D++
Sbjct: 170 AEEAVEFGFADEI 182


>gi|51773721|emb|CAC83157.2| putative protease/scaffold protein [Enterobacteria phage CP-1639]
          Length = 706

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 74/131 (56%), Gaps = 4/131 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I+L+INSPGG V  G+AI++ ++     I+ +  G AASM SL+  AG+      +P NA
Sbjct: 95  INLHINSPGGDVFEGIAIFNALKNHGAAITVYVDGVAASMASLIAMAGDT---VIMPENA 151

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H+P G   G A  +  +A+ + K++  +  +Y +  GKT +E+   L  +  MS +
Sbjct: 152 FMMIHKPWGISGGDAEKMRTYAERLDKLESVMVPVYAQKTGKTTDEIAAMLADETWMSGA 211

Query: 194 EACDWGVVDKV 204
           E    G  D+V
Sbjct: 212 ECLAHGFADQV 222


>gi|187776052|ref|ZP_02800048.2| peptidase S14, ClpP [Escherichia coli O157:H7 str. EC4196]
 gi|188024966|ref|ZP_02775094.2| peptidase S14, ClpP [Escherichia coli O157:H7 str. EC4113]
 gi|188025119|ref|ZP_02776143.2| peptidase S14, ClpP [Escherichia coli O157:H7 str. EC4113]
 gi|189010681|ref|ZP_02808648.2| peptidase S14, ClpP [Escherichia coli O157:H7 str. EC4076]
 gi|189010697|ref|ZP_02808743.2| peptidase S14, ClpP [Escherichia coli O157:H7 str. EC4076]
 gi|189010786|ref|ZP_02809320.2| peptidase S14, ClpP [Escherichia coli O157:H7 str. EC4076]
 gi|189402280|ref|ZP_02781420.2| peptidase S14, ClpP [Escherichia coli O157:H7 str. EC4401]
 gi|189403387|ref|ZP_02795136.2| peptidase S14, ClpP [Escherichia coli O157:H7 str. EC4486]
 gi|189404338|ref|ZP_02788626.2| peptidase S14, ClpP [Escherichia coli O157:H7 str. EC4501]
 gi|208809546|ref|ZP_03251883.1| Clp protease domain protein [Escherichia coli O157:H7 str. EC4206]
 gi|208810843|ref|ZP_03252676.1| Clp protease domain protein [Escherichia coli O157:H7 str. EC4206]
 gi|208814387|ref|ZP_03255716.1| clp protease domain protein [Escherichia coli O157:H7 str. EC4045]
 gi|208815618|ref|ZP_03256797.1| Clp protease domain protein [Escherichia coli O157:H7 str. EC4045]
 gi|208820967|ref|ZP_03261287.1| Clp protease domain protein [Escherichia coli O157:H7 str. EC4042]
 gi|208821734|ref|ZP_03262054.1| Clp protease domain protein [Escherichia coli O157:H7 str. EC4042]
 gi|209399975|ref|YP_002270289.1| Clp protease domain protein [Escherichia coli O157:H7 str. EC4115]
 gi|209400945|ref|YP_002271488.1| Clp protease domain protein [Escherichia coli O157:H7 str. EC4115]
 gi|217329311|ref|ZP_03445391.1| Clp protease domain protein [Escherichia coli O157:H7 str. TW14588]
 gi|254792824|ref|YP_003077661.1| protease [Escherichia coli O157:H7 str. TW14359]
 gi|291282476|ref|YP_003499294.1| Peptidase S14, ClpP [Escherichia coli O55:H7 str. CB9615]
 gi|187769280|gb|EDU33124.1| peptidase S14, ClpP [Escherichia coli O157:H7 str. EC4196]
 gi|188014762|gb|EDU52884.1| peptidase S14, ClpP [Escherichia coli O157:H7 str. EC4113]
 gi|188015660|gb|EDU53782.1| peptidase S14, ClpP [Escherichia coli O157:H7 str. EC4113]
 gi|188998504|gb|EDU67496.1| peptidase S14, ClpP [Escherichia coli O157:H7 str. EC4076]
 gi|188998975|gb|EDU67961.1| peptidase S14, ClpP [Escherichia coli O157:H7 str. EC4076]
 gi|188999003|gb|EDU67989.1| peptidase S14, ClpP [Escherichia coli O157:H7 str. EC4076]
 gi|189356456|gb|EDU74875.1| peptidase S14, ClpP [Escherichia coli O157:H7 str. EC4401]
 gi|189360987|gb|EDU79406.1| peptidase S14, ClpP [Escherichia coli O157:H7 str. EC4486]
 gi|189366267|gb|EDU84683.1| peptidase S14, ClpP [Escherichia coli O157:H7 str. EC4501]
 gi|208724349|gb|EDZ74057.1| Clp protease domain protein [Escherichia coli O157:H7 str. EC4206]
 gi|208729347|gb|EDZ78948.1| Clp protease domain protein [Escherichia coli O157:H7 str. EC4206]
 gi|208732266|gb|EDZ80954.1| Clp protease domain protein [Escherichia coli O157:H7 str. EC4045]
 gi|208735664|gb|EDZ84351.1| clp protease domain protein [Escherichia coli O157:H7 str. EC4045]
 gi|208741090|gb|EDZ88772.1| Clp protease domain protein [Escherichia coli O157:H7 str. EC4042]
 gi|208741857|gb|EDZ89539.1| Clp protease domain protein [Escherichia coli O157:H7 str. EC4042]
 gi|209161375|gb|ACI38808.1| Clp protease domain protein [Escherichia coli O157:H7 str. EC4115]
 gi|209162345|gb|ACI39778.1| Clp protease domain protein [Escherichia coli O157:H7 str. EC4115]
 gi|217317750|gb|EEC26178.1| Clp protease domain protein [Escherichia coli O157:H7 str. TW14588]
 gi|254592224|gb|ACT71585.1| protease [Escherichia coli O157:H7 str. TW14359]
 gi|290762349|gb|ADD56310.1| Peptidase S14, ClpP [Escherichia coli O55:H7 str. CB9615]
 gi|320192299|gb|EFW66944.1| Prophage Clp protease-like protein [Escherichia coli O157:H7 str.
           EC1212]
 gi|323181151|gb|EFZ66681.1| clp protease family protein [Escherichia coli 1180]
 gi|323181169|gb|EFZ66698.1| clp protease family protein [Escherichia coli 1180]
          Length = 651

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 73/131 (55%), Gaps = 4/131 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++  AG+      +P NA
Sbjct: 40  INLHINSPGGDVFEGIAIFNALKNQGATITVYVDGVAASMASVIAMAGDT---VIMPENA 96

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS +
Sbjct: 97  FMMIHKPWGFSGGDAEDMRSYADLLDKVESVLLPAYAQKTGKTTDEIAAMLADETWMSGA 156

Query: 194 EACDWGVVDKV 204
           E    G  D+V
Sbjct: 157 ECLAHGFADQV 167


>gi|218694488|ref|YP_002402155.1| putative ATP-dependent Clp protease proteolytic subunit
           (Endopeptidase Clp) of prophage [Escherichia coli 55989]
 gi|218351220|emb|CAU96924.1| putative ATP-dependent Clp protease proteolytic subunit
           (Endopeptidase Clp) of prophage [Escherichia coli 55989]
          Length = 723

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 74/131 (56%), Gaps = 4/131 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I+L+INSPGG V  G+AI++ ++     I+ +  G AASM SL+  AG+      +P NA
Sbjct: 112 INLHINSPGGDVFEGIAIFNALKNHGAAITVYVDGVAASMASLIAMAGDT---VIMPENA 168

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H+P G   G A  +  +A+ + K++  +  +Y +  GKT +E+   L  +  MS +
Sbjct: 169 FMMIHKPWGISGGDAEKMRTYAERLDKLESVMVPVYAQKTGKTTDEIAAMLADETWMSGA 228

Query: 194 EACDWGVVDKV 204
           E    G  D+V
Sbjct: 229 ECLAHGFADQV 239


>gi|189405378|ref|ZP_02815041.2| peptidase S14, ClpP [Escherichia coli O157:H7 str. EC869]
 gi|189406139|ref|ZP_02826588.2| peptidase S14, ClpP [Escherichia coli O157:H7 str. EC508]
 gi|193066454|ref|ZP_03047500.1| peptidase S14, ClpP [Escherichia coli E22]
 gi|189370416|gb|EDU88832.1| peptidase S14, ClpP [Escherichia coli O157:H7 str. EC869]
 gi|189376270|gb|EDU94686.1| peptidase S14, ClpP [Escherichia coli O157:H7 str. EC508]
 gi|192925925|gb|EDV80573.1| peptidase S14, ClpP [Escherichia coli E22]
          Length = 651

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 73/131 (55%), Gaps = 4/131 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++  AG+      +P NA
Sbjct: 40  INLHINSPGGDVFEGIAIFNALKNQGATITVYVDGVAASMASVIAMAGDT---VIMPENA 96

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS +
Sbjct: 97  FMMIHKPWGFSGGDAEDMRSYADLLDKVESVLLPAYAQKTGKTTDEIAAMLADETWMSGA 156

Query: 194 EACDWGVVDKV 204
           E    G  D+V
Sbjct: 157 ECLAHGFADQV 167


>gi|326338736|gb|EGD62556.1| Prophage Clp protease-like protein [Escherichia coli O157:H7 str.
           1125]
          Length = 651

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 73/131 (55%), Gaps = 4/131 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++  AG+      +P NA
Sbjct: 40  INLHINSPGGDVFEGIAIFNALKNQGATITVYVDGVAASMASVIAMAGDT---VIMPENA 96

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS +
Sbjct: 97  FMMIHKPWGFSGGDAEDMRSYADLLDKVESVLLPAYAQKTGKTTDEIAAMLADETWMSGA 156

Query: 194 EACDWGVVDKV 204
           E    G  D+V
Sbjct: 157 ECLAHGFADQV 167


>gi|195937913|ref|ZP_03083295.1| putative protease/scaffold protein [Escherichia coli O157:H7 str.
           EC4024]
 gi|195939168|ref|ZP_03084550.1| putative protease/scaffold protein [Escherichia coli O157:H7 str.
           EC4024]
 gi|260867687|ref|YP_003234089.1| putative protease/scaffold protein [Escherichia coli O111:H- str.
           11128]
 gi|260869329|ref|YP_003235731.1| putative protease/scaffold protein [Escherichia coli O111:H- str.
           11128]
 gi|257764043|dbj|BAI35538.1| putative protease/scaffold protein [Escherichia coli O111:H- str.
           11128]
 gi|257765685|dbj|BAI37180.1| putative protease/scaffold protein [Escherichia coli O111:H- str.
           11128]
 gi|320637096|gb|EFX06943.1| putative protease/scaffold protein [Escherichia coli O157:H7 str.
           G5101]
 gi|320653428|gb|EFX21548.1| putative protease/scaffold protein [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
          Length = 674

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 73/131 (55%), Gaps = 4/131 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++  AG+      +P NA
Sbjct: 63  INLHINSPGGDVFEGIAIFNALKNQGATITVYVDGVAASMASVIAMAGDT---VIMPENA 119

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS +
Sbjct: 120 FMMIHKPWGFSGGDAEDMRSYADLLDKVESVLLPAYAQKTGKTTDEIAAMLADETWMSGA 179

Query: 194 EACDWGVVDKV 204
           E    G  D+V
Sbjct: 180 ECLAHGFADQV 190


>gi|261254705|ref|ZP_05947238.1| putative protease/scaffold protein [Escherichia coli O157:H7 str.
           FRIK966]
          Length = 674

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 73/131 (55%), Gaps = 4/131 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++  AG+      +P NA
Sbjct: 63  INLHINSPGGDVFEGIAIFNALKNQGATITVYVDGVAASMASVIAMAGDT---VIMPENA 119

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS +
Sbjct: 120 FMMIHKPWGFSGGDAEDMRSYADLLDKVESVLLPAYAQKTGKTTDEIAAMLADETWMSGA 179

Query: 194 EACDWGVVDKV 204
           E    G  D+V
Sbjct: 180 ECLAHGFADQV 190


>gi|170755513|ref|YP_001782120.1| putative Clp protease [Clostridium botulinum B1 str. Okra]
 gi|169120725|gb|ACA44561.1| putative Clp protease [Clostridium botulinum B1 str. Okra]
          Length = 252

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 76/133 (57%), Gaps = 4/133 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           +++YINSPGG V  G AIY+ ++  K  I+    G AAS+ S++  AG+    F   N+ 
Sbjct: 55  LNIYINSPGGSVFQGTAIYNIIKRHKAKINIHVDGVAASIASVIAMAGD--TIFMPKNSM 112

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK--TYEEVEKTLDRDHIMSA 192
           +++H P     G A+++ + A D+ KI+  L E Y+   G   + E + + +D +  ++A
Sbjct: 113 MMIHNPWTFAWGNANELRKQADDLDKIRESLIEAYLSKAGDKLSRETLIEIMDNETWLTA 172

Query: 193 SEACDWGVVDKVL 205
            E  D+G+ D+++
Sbjct: 173 QECYDYGLCDELV 185


>gi|260843585|ref|YP_003221363.1| putative protease/scaffold protein [Escherichia coli O103:H2 str.
           12009]
 gi|257758732|dbj|BAI30229.1| putative protease/scaffold protein [Escherichia coli O103:H2 str.
           12009]
 gi|320642456|gb|EFX11729.1| putative protease/scaffold protein [Escherichia coli O157:H- str.
           493-89]
 gi|320659090|gb|EFX26697.1| putative protease/scaffold protein [Escherichia coli O55:H7 str.
           USDA 5905]
          Length = 674

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 73/131 (55%), Gaps = 4/131 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++  AG+      +P NA
Sbjct: 63  INLHINSPGGDVFEGIAIFNALKNQGATITVYVDGVAASMASVIAMAGDT---VIMPENA 119

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS +
Sbjct: 120 FMMIHKPWGFSGGDAEDMRSYADLLDKVESVLLPAYAQKTGKTTDEIAAMLADETWMSGA 179

Query: 194 EACDWGVVDKV 204
           E    G  D+V
Sbjct: 180 ECLAHGFADQV 190


>gi|209397642|ref|YP_002271427.1| putative phage portal protein, lambda family [Escherichia coli
           O157:H7 str. EC4115]
 gi|209159042|gb|ACI36475.1| putative phage portal protein, lambda family [Escherichia coli
           O157:H7 str. EC4115]
          Length = 1156

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 73/131 (55%), Gaps = 4/131 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++  AG+      +P NA
Sbjct: 545 INLHINSPGGDVFEGIAIFNALKNQGATITVYVDGVAASMASVIAMAGDT---VIMPENA 601

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS +
Sbjct: 602 FMMIHKPWGFSGGDAEDMRSYADLLDKVESVLLPAYAQKTGKTTDEIAAMLADETWMSGA 661

Query: 194 EACDWGVVDKV 204
           E    G  D+V
Sbjct: 662 ECLAHGFADQV 672


>gi|169257302|ref|YP_001700678.1| bacteriophage Clp protease involved in capsid processing [Phage
           Gifsy-2]
          Length = 696

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 72/132 (54%), Gaps = 4/132 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I+L+I+SPGG V  G+AIY+ ++      + +  G A SM S +   G       +P NA
Sbjct: 73  INLHIHSPGGAVLDGIAIYNLLKNHPAQKTVYIDGMACSMASAIAMVGNP---IIMPENA 129

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H+P G   G+A DI  +A  + KI+  +  IY +  GKT E++   L ++  MS +
Sbjct: 130 MMMIHKPRGVAGGEAEDIREYADLLDKIESVIIPIYTEKTGKTPEDIAAMLAKETWMSGA 189

Query: 194 EACDWGVVDKVL 205
           E    G  DK++
Sbjct: 190 ECVSEGFADKLI 201


>gi|323129300|gb|ADX16730.1| bacteriophage Clp protease involved in capsid processing
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 4/74]
          Length = 709

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 72/132 (54%), Gaps = 4/132 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I+L+I+SPGG V  G+AIY+ ++      + +  G A SM S +   G       +P NA
Sbjct: 86  INLHIHSPGGAVLDGIAIYNLLKNHPAQKTVYIDGMACSMASAIAMVGNP---IIMPENA 142

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H+P G   G+A DI  +A  + KI+  +  IY +  GKT E++   L ++  MS +
Sbjct: 143 MMMIHKPRGVAGGEAEDIREYADLLDKIESVIIPIYTEKTGKTPEDIAAMLAKETWMSGA 202

Query: 194 EACDWGVVDKVL 205
           E    G  DK++
Sbjct: 203 ECVSEGFADKLI 214


>gi|205352451|ref|YP_002226252.1| ATP dependent Clp protease [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205272232|emb|CAR37094.1| ATP Dependent clp Protease [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326627504|gb|EGE33847.1| ATP Dependent clp Protease [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 709

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 72/132 (54%), Gaps = 4/132 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I+L+I+SPGG V  G+AIY+ ++      + +  G A SM S +   G       +P NA
Sbjct: 86  INLHIHSPGGAVLDGIAIYNLLKNHPAQKTVYIDGMACSMASAIAMVGNP---IIMPENA 142

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H+P G   G+A DI  +A  + KI+  +  IY +  GKT E++   L ++  MS +
Sbjct: 143 MMMIHKPRGVAGGEAEDIREYADLLDKIESVIIPIYTEKTGKTPEDIAAMLAKETWMSGA 202

Query: 194 EACDWGVVDKVL 205
           E    G  DK++
Sbjct: 203 ECVSEGFADKLI 214


>gi|11875099|dbj|BAB19578.1| scaffolding protein [Enterobacteria phage VT1-Sakai]
 gi|326343885|gb|EGD67646.1| Prophage Clp protease-like protein [Escherichia coli O157:H7 str.
           1044]
          Length = 296

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 74/131 (56%), Gaps = 4/131 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++  AG+  +   +P NA
Sbjct: 40  INLHINSPGGDVFEGIAIFNALKNQGATITVYVDGVAASMASVIAMAGDTVI---MPENA 96

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS +
Sbjct: 97  FMMIHKPWGFSGGDAEDMRSYADLLDKVESVLLPAYAQKTGKTTDEIAAMLADETWMSGA 156

Query: 194 EACDWGVVDKV 204
           E    G  D+V
Sbjct: 157 ECLAHGFADQV 167


>gi|323935653|gb|EGB31970.1| Clp protease [Escherichia coli E1520]
          Length = 637

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 81/151 (53%), Gaps = 9/151 (5%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L+A      I+L I+SPGG V  G+AIY+ ++     I+ +  G AASM S++  AG+  
Sbjct: 38  LKALGDVSHINLRIHSPGGDVFEGIAIYNLLRNHPADITVYIDGVAASMASVVAMAGD-- 95

Query: 126 MRFALP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
            R  +P NA +++H+P G   G A D+  +A  + K++  L   Y +  GK+ +E+   L
Sbjct: 96  -RVVMPENAMMMIHKPWGISGGNAGDMRDYADLLDKVETVLVPAYARKTGKSAQEITAML 154

Query: 185 DRDHIMSASEACDWGVVDKVL-----MSRID 210
           + +  M   E    G  D++L     M+RI+
Sbjct: 155 EDETWMDGKECLKHGFADELLPSVRAMARIE 185


>gi|167993401|ref|ZP_02574495.1| Clp protease domain protein [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|194443858|ref|YP_002040235.1| ATP-dependent protease [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|198242377|ref|YP_002215244.1| ATP-dependent protease [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|194402521|gb|ACF62743.1| ATP-dependent protease [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|197936893|gb|ACH74226.1| ATP-dependent protease [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|205328541|gb|EDZ15305.1| Clp protease domain protein [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|261246251|emb|CBG24056.1| Clp-like protease [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|312912023|dbj|BAJ35997.1| ATP-dependent Clp protease [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321223646|gb|EFX48709.1| Prophage Clp protease-like protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|326622990|gb|EGE29335.1| Clp protease-like protein [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 684

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 72/132 (54%), Gaps = 4/132 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I+L+I+SPGG V  G+AIY+ ++      + +  G A SM S +   G       +P NA
Sbjct: 61  INLHIHSPGGAVLDGIAIYNLLKNHPAQKTVYIDGMACSMASAIAMVGNP---IIMPENA 117

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H+P G   G+A DI  +A  + KI+  +  IY +  GKT E++   L ++  MS +
Sbjct: 118 MMMIHKPRGVAGGEAEDIREYADLLDKIESVIIPIYTEKTGKTPEDIAAMLAKETWMSGA 177

Query: 194 EACDWGVVDKVL 205
           E    G  DK++
Sbjct: 178 ECVSEGFADKLI 189


>gi|168243819|ref|ZP_02668751.1| Clp protease domain protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194448205|ref|YP_002045037.1| ATP-dependent protease [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194406509|gb|ACF66728.1| ATP-dependent protease [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|205337092|gb|EDZ23856.1| Clp protease domain protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 683

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 72/132 (54%), Gaps = 4/132 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I+L+I+SPGG V  G+AIY+ ++      + +  G A SM S +   G       +P NA
Sbjct: 61  INLHIHSPGGAVLDGIAIYNLLKNHPAQKTVYIDGMACSMASAIAMVGNP---IIMPENA 117

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H+P G   G+A DI  +A  + KI+  +  IY +  GKT E++   L ++  MS +
Sbjct: 118 MMMIHKPRGVAGGEAEDIREYADLLDKIESVIIPIYTEKTGKTPEDIAAMLAKETWMSGA 177

Query: 194 EACDWGVVDKVL 205
           E    G  DK++
Sbjct: 178 ECVSEGFADKLI 189


>gi|224584460|ref|YP_002638258.1| Clp protease-like protein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224468987|gb|ACN46817.1| Clp protease-like protein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 684

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 72/132 (54%), Gaps = 4/132 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I+L+I+SPGG V  G+AIY+ ++      + +  G A SM S +   G       +P NA
Sbjct: 61  INLHIHSPGGAVLDGIAIYNLLKNHPAQKTVYIDGMACSMASAIAMVGNP---IIMPENA 117

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H+P G   G+A DI  +A  + KI+  +  IY +  GKT E++   L ++  MS +
Sbjct: 118 MMMIHKPRGVAGGEAEDIREYADLLDKIESVIIPIYTEKTGKTPEDIAAMLAKETWMSGA 177

Query: 194 EACDWGVVDKVL 205
           E    G  DK++
Sbjct: 178 ECVSEGFADKLI 189


>gi|16764393|ref|NP_460008.1| Clp protease-like protein [Phage Gifsy-2]
 gi|16419547|gb|AAL19967.1| Gifsy-2 prophage Clp protease-like protein [Phage Gifsy-2]
 gi|267992782|gb|ACY87667.1| Clp protease-like protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301157578|emb|CBW17068.1| ATP Dependent clp Protease [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
          Length = 693

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 72/132 (54%), Gaps = 4/132 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I+L+I+SPGG V  G+AIY+ ++      + +  G A SM S +   G       +P NA
Sbjct: 70  INLHIHSPGGAVLDGIAIYNLLKNHPAQKTVYIDGMACSMASAIAMVGNP---IIMPENA 126

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H+P G   G+A DI  +A  + KI+  +  IY +  GKT E++   L ++  MS +
Sbjct: 127 MMMIHKPRGVAGGEAEDIREYADLLDKIESVIIPIYTEKTGKTPEDIAAMLAKETWMSGA 186

Query: 194 EACDWGVVDKVL 205
           E    G  DK++
Sbjct: 187 ECVSEGFADKLI 198


>gi|325109862|ref|YP_004270930.1| peptidase S14 ClpP [Planctomyces brasiliensis DSM 5305]
 gi|324970130|gb|ADY60908.1| peptidase S14 ClpP [Planctomyces brasiliensis DSM 5305]
          Length = 205

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 71/130 (54%), Gaps = 2/130 (1%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I + INSPGG +  G+ IY+ ++     ++T  +G A S GS++L AG++  R     A 
Sbjct: 29  IEVVINSPGGSLIEGLGIYNLLKSHGGHVTTRTVGAAWSAGSIVLLAGKR--RVMGGGAS 86

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           +++H P+G F G  +D+ +  + +    R+L ++YV   G   E+VE+ L  +   +A E
Sbjct: 87  LMVHLPAGEFRGNVNDLAKFREALDVAGRQLVDVYVAETGTAREQVEQWLHDETWFTAQE 146

Query: 195 ACDWGVVDKV 204
           A D G    +
Sbjct: 147 AVDAGFAHAI 156


>gi|282599814|ref|ZP_05971986.2| gifsy-2 prophage resembles Clp protease [Providencia rustigianii
           DSM 4541]
 gi|282567947|gb|EFB73482.1| gifsy-2 prophage resembles Clp protease [Providencia rustigianii
           DSM 4541]
          Length = 683

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 76/132 (57%), Gaps = 4/132 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I+L+I+SPGG V  G+AIY+ ++     I+ +  G AASM S++   G++     +P NA
Sbjct: 71  INLHIHSPGGEVFEGIAIYNQLKNHNASITVYIDGLAASMASVIAMVGDE---VIMPTNA 127

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H+P G   G A D+  +A  + K++  L   Y++  GKT EE+E  L  +  ++A 
Sbjct: 128 MMMIHKPWGVSWGDADDMRDYADLLDKVENVLIPAYMEKTGKTKEELEAMLSEETWLTAE 187

Query: 194 EACDWGVVDKVL 205
           E  + G  + ++
Sbjct: 188 ECVEHGFANTII 199


>gi|15802431|ref|NP_288457.1| putative peptidase encoded within prophage CP-933U [Escherichia
           coli O157:H7 EDL933]
 gi|12516112|gb|AAG57011.1|AE005420_16 putative peptidase encoded within prophage CP-933U [Escherichia
           coli O157:H7 str. EDL933]
          Length = 319

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 74/131 (56%), Gaps = 4/131 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++  AG+  +   +P NA
Sbjct: 63  INLHINSPGGDVFEGIAIFNALKNQGATITVYVDGVAASMASVIAMAGDTVI---MPENA 119

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS +
Sbjct: 120 FMMIHKPWGFSGGDAEDMRSYADLLDKVESVLLPAYAQKTGKTTDEIAAMLADETWMSGA 179

Query: 194 EACDWGVVDKV 204
           E    G  D+V
Sbjct: 180 ECLAHGFADQV 190


>gi|237731146|ref|ZP_04561627.1| protease subunit of ATP-dependent Clp protease [Citrobacter sp.
           30_2]
 gi|226906685|gb|EEH92603.1| protease subunit of ATP-dependent Clp protease [Citrobacter sp.
           30_2]
          Length = 647

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 71/134 (52%), Gaps = 4/134 (2%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I+L+INSPGG V  G+AI++ ++     I+    G AASM S++   G       +P N 
Sbjct: 40  INLHINSPGGDVFDGIAIFNALKHHGAAITVHIDGLAASMASVIAMVGNP---VIMPENT 96

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H+P G   G A+D+  +A  + K++  L   Y +  GKT EE+   LD +  M   
Sbjct: 97  MMMIHKPWGFAGGDANDMRDYADLLDKVESVLIPAYAEKTGKTTEEIAAMLDDETWMDGK 156

Query: 194 EACDWGVVDKVLMS 207
           E  + G  D+V  S
Sbjct: 157 ECLEHGFADQVTTS 170


>gi|300954440|ref|ZP_07166892.1| Clp protease [Escherichia coli MS 175-1]
 gi|300318590|gb|EFJ68374.1| Clp protease [Escherichia coli MS 175-1]
          Length = 637

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 81/151 (53%), Gaps = 9/151 (5%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L+A      I+L I+SPGG V  G+AIY+ ++     I+ +  G AASM S++  AG+  
Sbjct: 38  LKALGDVSHINLRIHSPGGDVFEGIAIYNLLRNHPADITVYIDGVAASMASVVAMAGD-- 95

Query: 126 MRFALP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
            R  +P NA +++H+P G   G A D+  +A  + K++  L   Y +  GK+ +E+   L
Sbjct: 96  -RVVMPENAMMMIHKPWGISGGNAGDMRDYADLLDKVETVLIPAYARKTGKSAQEITAML 154

Query: 185 DRDHIMSASEACDWGVVDKVL-----MSRID 210
           + +  M   E    G  D++L     M+RI+
Sbjct: 155 EDETWMDGKECLKHGFADELLPSVRAMARIE 185


>gi|191172046|ref|ZP_03033590.1| ATP-dependent protease [Escherichia coli F11]
 gi|300991767|ref|ZP_07179630.1| Clp protease [Escherichia coli MS 200-1]
 gi|190907573|gb|EDV67168.1| ATP-dependent protease [Escherichia coli F11]
 gi|300305521|gb|EFJ60041.1| Clp protease [Escherichia coli MS 200-1]
 gi|324013002|gb|EGB82221.1| Clp protease [Escherichia coli MS 60-1]
          Length = 637

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 81/151 (53%), Gaps = 9/151 (5%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L+A      I+L I+SPGG V  G+AIY+ ++     I+ +  G AASM S++  AG+  
Sbjct: 38  LKALGDVSHINLRIHSPGGDVFEGIAIYNLLRNHPADITVYIDGVAASMASVVAMAGD-- 95

Query: 126 MRFALP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
            R  +P NA +++H+P G   G A D+  +A  + K++  L   Y +  GK+ +E+   L
Sbjct: 96  -RVVMPENAMMMIHKPWGISGGNAGDMRDYADLLDKVETVLIPAYARKTGKSAQEITAML 154

Query: 185 DRDHIMSASEACDWGVVDKVL-----MSRID 210
           + +  M   E    G  D++L     M+RI+
Sbjct: 155 EDETWMDGKECLKHGFADELLPSVRAMARIE 185


>gi|15832214|ref|NP_310987.1| protease/scaffold protein [Escherichia coli O157:H7 str. Sakai]
 gi|13362429|dbj|BAB36383.1| putative protease/scaffold protein [Escherichia coli O157:H7 str.
           Sakai]
          Length = 368

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 73/131 (55%), Gaps = 4/131 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++  AG+      +P NA
Sbjct: 112 INLHINSPGGDVFEGIAIFNALKNQGATITVYVDGVAASMASVIAMAGDT---VIMPENA 168

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS +
Sbjct: 169 FMMIHKPWGFSGGDAEDMRSYADLLDKVESVLLPAYAQKTGKTTDEIAAMLADETWMSGA 228

Query: 194 EACDWGVVDKV 204
           E    G  D+V
Sbjct: 229 ECLAHGFADQV 239


>gi|237840947|ref|XP_002369771.1| ATP-dependent Clp protease proteolytic subunit, putative
           [Toxoplasma gondii ME49]
 gi|211967435|gb|EEB02631.1| ATP-dependent Clp protease proteolytic subunit, putative
           [Toxoplasma gondii ME49]
 gi|221483722|gb|EEE22034.1| ATP-dependent Clp protease proteolytic subunit, putative
           [Toxoplasma gondii GT1]
          Length = 310

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 28/160 (17%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           + L INSPGG VTA +++ D    +   + T  +GQA  + +LLL+AG  G R A P+ R
Sbjct: 144 VDLLINSPGGSVTAALSLLDLRHSLPFEVHTTSIGQAGGVAALLLAAGTPGHRRAFPSCR 203

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC--------------------- 173
             L Q  G   GQA  IER   +I  ++R +       C                     
Sbjct: 204 FSLRQIEGRVEGQAETIERETAEIESVQRLVYRHLAAFCTRRGPGDRGSERESHSERGEA 263

Query: 174 -------GKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
                   K  +E+++  + +  +SA +  ++G++D+V+ 
Sbjct: 264 GEDRERLAKREKEIQEDCENELFLSAEQGVEYGLIDQVIQ 303


>gi|2342674|gb|AAB70396.1| Similar to ATP-dependent Clp protease (gb|D90915). EST gb|N65461
           comes from this gene [Arabidopsis thaliana]
          Length = 292

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 88/187 (47%), Gaps = 38/187 (20%)

Query: 34  DIYSRLLKERIVFVTGQIEDHM---------ATLICAQLLFLEAENPQKEISLYINSPGG 84
           D+ S LL  RIV++    +D +           L+ A+L++L+  +P++ I +YINS G 
Sbjct: 121 DLPSMLLDGRIVYIGMPTDDDIFCFQLVPAVTELVVAELMYLQWLDPKEPIYIYINSTGT 180

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
               G  ++           T C+G A     LLLSAG KG RF +P+A+          
Sbjct: 181 TRDDGETVH-----------TVCVGAAIGQACLLLSAGTKGKRFMMPHAK---------- 219

Query: 145 SGQASD-------IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
            G+ S+       I      ++  +  L E+  K+ G + E V   + R + M A +A +
Sbjct: 220 -GEESEFDYFIFLIPVMQLQVITNRDILVELLSKHTGNSVETVANVMRRPYYMDAPKAKE 278

Query: 198 WGVVDKV 204
           +GV+D+V
Sbjct: 279 FGVIDRV 285


>gi|213161814|ref|ZP_03347524.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
          enterica subsp. enterica serovar Typhi str. E00-7866]
          Length = 87

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/53 (62%), Positives = 45/53 (84%), Gaps = 2/53 (3%)

Query: 1  MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIED 53
          MS+ G  ++D+    + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+ED
Sbjct: 37 MSYSG--ERDNLAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVED 87


>gi|221504262|gb|EEE29937.1| ATP-dependent Clp protease proteolytic subunit, putative
           [Toxoplasma gondii VEG]
          Length = 310

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 28/160 (17%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           + L INSPGG VTA +++ D    +   + T  +GQA  + +LLL+AG  G R A P+ R
Sbjct: 144 VDLLINSPGGSVTAALSLLDLRHSLPFEVHTTSIGQAGGVAALLLAAGTPGHRRAFPSCR 203

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC--------------------- 173
             L Q  G   GQA  IER   +I  ++R +       C                     
Sbjct: 204 FSLRQIEGRVEGQAETIERETAEIESVQRLVYRHLAAFCTRRGPGDRGSERESHSERGEA 263

Query: 174 -------GKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
                   K  +E+++  + +  +SA +  ++G++D+V+ 
Sbjct: 264 GEDRERLAKREKEIQEDCENELFLSAEQGVEYGLIDQVIQ 303


>gi|218890093|ref|YP_002438957.1| Putative Clp protease [Pseudomonas aeruginosa LESB58]
 gi|218770316|emb|CAW26081.1| Putative Clp protease [Pseudomonas aeruginosa LESB58]
          Length = 693

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 77/140 (55%), Gaps = 4/140 (2%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L+A     +ISL+I+SPGG V  G AIY+ ++     +  +  G AASM S++  AG+  
Sbjct: 63  LKAMGDLNKISLHIHSPGGDVFEGTAIYNLLRNHPASVDVYIDGLAASMASVIAMAGDT- 121

Query: 126 MRFALP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
               +P NA +++H+P G   G A D+ R+A+ + K++  L   Y    GK+ ++++  L
Sbjct: 122 --IYMPENAMMMVHKPWGIQGGDADDMRRYAELLDKVEDTLVMAYANKTGKSADDIKALL 179

Query: 185 DRDHIMSASEACDWGVVDKV 204
             +  M+  EA   G  D++
Sbjct: 180 KEETWMNGREAVAAGFADQL 199


>gi|228966903|ref|ZP_04127944.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228792798|gb|EEM40359.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar sotto str. T04001]
          Length = 241

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 91/170 (53%), Gaps = 13/170 (7%)

Query: 45  VFVTGQI-----EDHMATLICAQLLF--LEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97
           +F+ G I     ED+    + +      L+A      I+L++NSPGG V  G+AIY+ ++
Sbjct: 11  IFIYGDIVRWVWEDYFPEDVSSNTFKDDLDALGDVSTINLHVNSPGGSVFEGIAIYNMLK 70

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NARILLHQPSGGFSGQASDIERHAQ 156
             K  ++ +    AAS+ S++  AG+      +P N+ +++H P     G A+++ + A 
Sbjct: 71  RHKAKVNVYVDALAASIASVIAMAGD---TIYMPKNSMLMIHNPWTWTEGNATELRKAAD 127

Query: 157 DIVKIKRRLNEIYVKNCGK--TYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           D+ +I     + Y++  G+  T E +++ LD +  +SA EA ++G+ D V
Sbjct: 128 DLDRIGNSSKQTYLQKAGEKLTDEMLQEMLDAETWLSADEAYEYGLCDVV 177


>gi|145635838|ref|ZP_01791529.1| putative Clp-like protease [Haemophilus influenzae PittAA]
 gi|145266895|gb|EDK06908.1| putative Clp-like protease [Haemophilus influenzae PittAA]
          Length = 657

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 76/136 (55%), Gaps = 4/136 (2%)

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           N  K+I+L+I+SPGG V  G+AIY+ ++     ++ +  G AASM S++  AG +     
Sbjct: 44  NNLKQINLHIHSPGGDVFDGIAIYNLLKNHPANVTVYIDGLAASMASVIAMAGNE---VI 100

Query: 130 LP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +P NA +++H+P G   G A D+ ++A  + K++  L   Y    GK  EE+ + L  + 
Sbjct: 101 MPENAMMMIHKPWGIQGGDAEDMRKYADLLDKVENTLIPAYANKTGKPPEELAEMLSVET 160

Query: 189 IMSASEACDWGVVDKV 204
            ++  E  + G  DK+
Sbjct: 161 WLNGKECVEQGFADKL 176


>gi|163311880|gb|ABY26953.1| Clp protease 2 proteolytic subunit [Capsicum annuum]
          Length = 99

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 47/64 (73%)

Query: 30 ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
          ER   + S+L + RI+   G ++D MA +I AQLL+L+A +P K+I +Y+NSPGG VTAG
Sbjct: 36 ERFQSVISQLFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPTKDIVMYVNSPGGSVTAG 95

Query: 90 MAIY 93
          MA++
Sbjct: 96 MAVF 99


>gi|160898878|ref|YP_001564460.1| peptidase S14 ClpP [Delftia acidovorans SPH-1]
 gi|160364462|gb|ABX36075.1| peptidase S14 ClpP [Delftia acidovorans SPH-1]
          Length = 345

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 10/154 (6%)

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP---ISTFCMGQAASMGSLLLSAGEKGM 126
           N   +I + +N+PGG V AG+ I++ ++        ++T  MG AAS+GS+LL AG+K  
Sbjct: 40  NVAGDIDVELNTPGGDVFAGLGIFNMLRAHAAKGFQVTTRVMGVAASIGSVLLLAGDK-- 97

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           R    N   + H  + G  G A ++  HA  + K+K +L  IYV   G      +  L +
Sbjct: 98  REMPKNTMAMTHNVASGIWGTADELRDHADTMDKVKGQLRGIYVDRLGVDEATADAMLGK 157

Query: 187 DHIMSASEACDWGVVDKVL-----MSRIDIEEKS 215
           D+ M+A EA   G    +L      ++ D+E  S
Sbjct: 158 DNWMTADEALATGFATDLLAEVQMQAKFDVERAS 191


>gi|325499899|gb|EGC97758.1| ATP-dependent protease [Escherichia fergusonii ECD227]
          Length = 652

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 4/132 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
            I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   +   +P N
Sbjct: 39  HINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPVI---MPEN 95

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
             +++H+P G   G A D+  HA  + K++  L   Y +  GKT +E+   L  +  MS 
Sbjct: 96  TFMMIHKPFGFTGGDAEDMRTHADLLDKVEAVLLPAYAQKTGKTTDEIAAMLADETWMSG 155

Query: 193 SEACDWGVVDKV 204
           +E    G  D+V
Sbjct: 156 AECLAHGFADQV 167


>gi|167856520|ref|ZP_02479231.1| putative Clp-like protease [Haemophilus parasuis 29755]
 gi|167852352|gb|EDS23655.1| putative Clp-like protease [Haemophilus parasuis 29755]
          Length = 655

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 74/133 (55%), Gaps = 4/133 (3%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP- 131
           K I L+I+SPGG V  G+AIY+ ++      + +  G AASM S++   G+      +P 
Sbjct: 43  KHIDLHIHSPGGSVFDGIAIYNLLKNHPASKTVYIDGLAASMASVIAMVGDP---VIMPK 99

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           NA +++H+P G   G A D+ ++A  + KI+  L   Y +  GK+ EE+ + L  +  ++
Sbjct: 100 NAMMMIHKPWGIQGGDAEDMRKYADLLDKIENTLIPAYAEKTGKSPEELAEMLKEETWLT 159

Query: 192 ASEACDWGVVDKV 204
           A E  + G  DK+
Sbjct: 160 AEECVEQGFADKL 172


>gi|226364131|ref|YP_002781913.1| peptidase S14 family protein [Rhodococcus opacus B4]
 gi|226242620|dbj|BAH52968.1| peptidase S14 family protein [Rhodococcus opacus B4]
          Length = 189

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 88/192 (45%), Gaps = 12/192 (6%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           M V     G   + +  RL  +RIV +TG+++        A L   +A     E+ ++++
Sbjct: 1   MPVASVGTGSPDW-LAERLFDKRIVSLTGRLDAEATNRAAASLALFDASG-DDEVQVWLH 58

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
                V A   + DT+  +  P+   C G    +   LL+  ++  R A  +A   L +P
Sbjct: 59  GVDADVDAAATLLDTLDLMGVPLHVHCRGDVRGVAVALLAPADR--RTAAAHATFHLREP 116

Query: 141 SGGFSGQASDI----ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
               +G ASD+    E+H Q +    RRL +    +CG+  + V   +    I++A EA 
Sbjct: 117 RTSCTGPASDVAIAAEQHEQQL----RRLQQRIADSCGRPLDTVIGDMREHRILTADEAR 172

Query: 197 DWGVVDKVLMSR 208
           D+G++D +  +R
Sbjct: 173 DYGLIDTITGAR 184


>gi|237836623|ref|XP_002367609.1| ATP-dependent Clp protease proteolytic subunit, putative
           [Toxoplasma gondii ME49]
 gi|211965273|gb|EEB00469.1| ATP-dependent Clp protease proteolytic subunit, putative
           [Toxoplasma gondii ME49]
          Length = 131

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 79/121 (65%)

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
           +V AG+A++D +  ++ P+ T  +G AAS  SLLL+AG  G RFA+  + +LLHQP+G  
Sbjct: 1   MVVAGLALFDALSTLQAPVYTVNLGLAASAASLLLAAGSGGRRFAVEQSSVLLHQPAGSL 60

Query: 145 SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           +G+ S+++   +++ K+  ++  +Y +  G+    V + +  + +++A +AC++G+VD V
Sbjct: 61  AGRDSELQDERREVEKLHEKVVRLYSEVTGRPEARVRRDIKEEKVLTAEQACEYGLVDAV 120

Query: 205 L 205
           L
Sbjct: 121 L 121


>gi|153932099|ref|YP_001384751.1| putative Clp protease [Clostridium botulinum A str. ATCC 19397]
 gi|152928143|gb|ABS33643.1| putative Clp protease [Clostridium botulinum A str. ATCC 19397]
          Length = 252

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 73/133 (54%), Gaps = 4/133 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           +++YINSPGG V  G AIY+ ++  K  I+    G AAS+ S++  AG     F   N+ 
Sbjct: 55  LNIYINSPGGSVFQGQAIYNIIKRHKAKINIHVDGVAASIASVIAMAG--NTIFMPKNSM 112

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK--TYEEVEKTLDRDHIMSA 192
           +++H P     G A ++ + A D+ KI+  L E Y+   G   + E +   +D +  ++A
Sbjct: 113 MMIHNPWTFAYGNAKELRKQADDLDKIRESLIEAYLSKAGDKLSRETLIGIMDNETWLTA 172

Query: 193 SEACDWGVVDKVL 205
            E  D+G+ D+++
Sbjct: 173 QECYDYGLCDELV 185


>gi|293394114|ref|ZP_06638415.1| gifsy-2 prophage resembles Clp protease [Serratia odorifera DSM
           4582]
 gi|291423374|gb|EFE96602.1| gifsy-2 prophage resembles Clp protease [Serratia odorifera DSM
           4582]
          Length = 650

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 74/143 (51%), Gaps = 4/143 (2%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L+A     +I+L+INSPGG V  G+AI++ ++     I+    G AASM S++   G   
Sbjct: 31  LQALGDITQINLHINSPGGDVFDGIAIFNALKNHGAAITVHIDGLAASMASVIAMVGNP- 89

Query: 126 MRFALP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
               +P N  +++H+P G   G A+D+  +A  + K++  L   YV   GK+ +EV   L
Sbjct: 90  --VIMPENTMMMIHKPWGFAGGDANDMRNYADLLDKVENVLIPAYVAKTGKSADEVAAML 147

Query: 185 DRDHIMSASEACDWGVVDKVLMS 207
           D +  M   E    G  D+V  S
Sbjct: 148 DDETWMDGKECLALGFADQVTPS 170


>gi|148912770|ref|YP_001293349.1| Putative Clp protease [Pseudomonas phage F10]
          Length = 693

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 77/140 (55%), Gaps = 4/140 (2%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L+A     +I+L+I+SPGG V  G AIY+ ++     +  +  G AASM S++  AG+  
Sbjct: 63  LKAMGDLTKINLHIHSPGGDVFEGTAIYNLLRNHPASVDVYIDGLAASMASVIAMAGDT- 121

Query: 126 MRFALP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
               +P NA +++H+P G   G A D+ R+A+ + K++  L   Y    GK+ ++++  L
Sbjct: 122 --IYMPENAMMMVHKPWGIQGGDADDMRRYAELLDKVEDTLVMAYANKTGKSADDIKALL 179

Query: 185 DRDHIMSASEACDWGVVDKV 204
             +  M+  EA   G  D++
Sbjct: 180 KEETWMNGREAVAAGFADQL 199


>gi|219870832|ref|YP_002475207.1| Clp protease-like protein [Haemophilus parasuis SH0165]
 gi|219691036|gb|ACL32259.1| Clp protease-like protein [Haemophilus parasuis SH0165]
          Length = 655

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 74/133 (55%), Gaps = 4/133 (3%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP- 131
           K I L+I+SPGG V  G+AIY+ ++      + +  G AASM S++   G+      +P 
Sbjct: 43  KHIDLHIHSPGGSVFDGIAIYNLLKNHPASKTVYIDGLAASMASVIAMLGDP---VIMPK 99

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           NA +++H+P G  SG A D+ ++A  + KI+      Y +  GK+ EE+ + L  +  ++
Sbjct: 100 NAMMMIHKPWGIQSGDAEDMRKYADLLDKIENTTIPAYAEKTGKSPEELAEMLKEETWLT 159

Query: 192 ASEACDWGVVDKV 204
           A E  + G  DK+
Sbjct: 160 AEECVEQGFADKL 172


>gi|218550008|ref|YP_002383799.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           of prophage [Escherichia fergusonii ATCC 35469]
 gi|218357549|emb|CAQ90188.1| putative ATP-dependent Clp protease proteolytic subunit
           (Endopeptidase Clp) of prophage [Escherichia fergusonii
           ATCC 35469]
          Length = 757

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 72/131 (54%), Gaps = 3/131 (2%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I L+I+SPGG V  G AI++T+  +K  +  +  G AASM S+++     G    +P NA
Sbjct: 140 IDLHIHSPGGDVMQGFAIFNTLSRLKAKVDIWVDGVAASMASMIVCL--PGATVHMPENA 197

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            I++H+P GG +G + D+  +A  + + +  +   Y+   G   EE+E  L  +  +S +
Sbjct: 198 WIMVHKPWGGIAGDSDDMRDYADWLDRNEALMLSAYMNKTGLGQEELEAMLKSETWLSGA 257

Query: 194 EACDWGVVDKV 204
           EA + G  D +
Sbjct: 258 EAVEKGFADSL 268


>gi|187939802|gb|ACD38942.1| hypothetical protease protein [Pseudomonas aeruginosa]
          Length = 693

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 77/140 (55%), Gaps = 4/140 (2%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L+A     +I+L+I+SPGG V  G AIY+ ++     +  +  G AASM S++  AG+  
Sbjct: 63  LKAMGDLTKINLHIHSPGGDVFEGTAIYNLLRNHPASVDVYIDGLAASMASVIAMAGDT- 121

Query: 126 MRFALP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
               +P NA +++H+P G   G A D+ R+A+ + K++  L   Y    GK+ ++++  L
Sbjct: 122 --IYMPENAMMMVHKPWGIQGGDADDMRRYAELLDKVEDTLVMAYANKTGKSADDIKALL 179

Query: 185 DRDHIMSASEACDWGVVDKV 204
             +  M+  EA   G  D++
Sbjct: 180 KEETWMNGREAVAAGFADQL 199


>gi|320085572|emb|CBY95351.1| ATP-dependent Clp protease proteolytic subunit Endopeptidase Clp
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
          Length = 696

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 4/132 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I+L+I+SPGG V  G+AIY+ ++      + +  G A SM S +   G       +P NA
Sbjct: 73  INLHIHSPGGAVLDGIAIYNLLKNHPAQKTVYIDGMACSMASAIAMVGNP---IIMPENA 129

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H+P G   G+A DI  +A  + KI+  +  IY +  GK  E++   L ++  MS +
Sbjct: 130 MMMIHKPRGVAGGEAEDIREYADLLDKIESVIIPIYTEKTGKMPEDIAAMLAKETWMSGA 189

Query: 194 EACDWGVVDKVL 205
           E    G  DK++
Sbjct: 190 ECVSVGFADKLI 201


>gi|187940099|gb|ACD39231.1| protease domain protein [Pseudomonas aeruginosa]
          Length = 693

 Score = 71.6 bits (174), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 77/140 (55%), Gaps = 4/140 (2%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L+A     +I+L+I+SPGG V  G AIY+ ++     +  +  G AASM S++  AG+  
Sbjct: 63  LKAMGDLTKINLHIHSPGGDVFEGTAIYNLLRNHPASVDVYIDGLAASMASVIAMAGDT- 121

Query: 126 MRFALP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
               +P NA +++H+P G   G A D+ R+A+ + K++  L   Y    GK+ ++++  L
Sbjct: 122 --IYMPENAMMMVHKPWGIQGGDADDMRRYAELLDKVEDTLVMAYANKTGKSADDIKALL 179

Query: 185 DRDHIMSASEACDWGVVDKV 204
             +  M+  EA   G  D++
Sbjct: 180 KEETWMNGREAVAAGFADQL 199


>gi|168822022|ref|ZP_02834022.1| Clp protease domain protein [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205341497|gb|EDZ28261.1| Clp protease domain protein [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
          Length = 684

 Score = 71.2 bits (173), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 4/132 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I+L+I+SPGG V  G+AIY+ ++      + +  G A SM S +   G       +P NA
Sbjct: 61  INLHIHSPGGAVLDGIAIYNLLKNHPAQKTVYIDGMACSMASAIAMVGNP---IIMPENA 117

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H+P G   G+A DI  +A  + KI+  +  IY +  GK  E++   L ++  MS +
Sbjct: 118 MMMIHKPRGVAGGEAEDIREYADLLDKIESVIIPIYTEKTGKMPEDIAAMLAKETWMSGA 177

Query: 194 EACDWGVVDKVL 205
           E    G  DK++
Sbjct: 178 ECVSEGFADKLI 189


>gi|161899459|ref|XP_001712963.1| Clp protease [Bigelowiella natans]
 gi|1401209|gb|AAD05370.1| ATP-dependent clp protease proteolytic subunit homolog
           [Bigelowiella natans]
 gi|75756458|gb|ABA27351.1| Clp protease [Bigelowiella natans]
          Length = 226

 Score = 71.2 bits (173), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 89/181 (49%), Gaps = 10/181 (5%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           +I  ++ K + +F+ G + D ++  I + LLF   +N Q  ISL +NS G  +T  + I 
Sbjct: 45  EIAQKMSKTKSIFIYGYLNDSLSIQIISNLLFFNGKNEQ-GISLILNSNGSNITDSININ 103

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           + M +I P + T  +G       L+L+ G+K  R   PNA+I + +      G+ + I+ 
Sbjct: 104 ECMNYIYPEVYTVGIGNIMDSIILILANGKKDSRAIFPNAKISISKKLLRSYGKYNTIQE 163

Query: 154 HAQDIVK----IKRRLNEIYVKNCGKTYEEVEKT---LDRDHIMSAS--EACDWGVVDKV 204
               +V       R LN I ++       + +K    +D++   S S  EA  +G++DKV
Sbjct: 164 KCVFLVHASFLFSRILNHIALETHYSAVNDRKKNDLFIDKNRFFSISNKEALSYGIIDKV 223

Query: 205 L 205
           L
Sbjct: 224 L 224


>gi|261880976|ref|ZP_06007403.1| ATP-dependent Clp protease proteolytic subunit [Prevotella
           bergensis DSM 17361]
 gi|270332280|gb|EFA43066.1| ATP-dependent Clp protease proteolytic subunit [Prevotella
           bergensis DSM 17361]
          Length = 346

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 83/164 (50%), Gaps = 6/164 (3%)

Query: 45  VFVTGQIEDHMATLICAQLL--FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           + + G I D+   +   Q+    + AE+  K I + INS GG V  G+AI++ ++  K  
Sbjct: 16  ILLYGDIGDNYGAVTSGQITRELMAAESAYKNIDIRINSVGGEVYTGIAIFNALRASKAN 75

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIK 162
           I+ +  G AASM S++   G+    +    AR++LH  SGG  G   D++   + +  ++
Sbjct: 76  ITLYVDGVAASMASVIALCGKP--VYMSRYARLMLHSVSGGCYGNKKDLKEVLEQMESLE 133

Query: 163 RRLNEIYVKNCGKTYEEVEKTL--DRDHIMSASEACDWGVVDKV 204
             L ++Y +  GK    V+       DH ++A EA   G++D +
Sbjct: 134 DTLCQMYAERLGKDAAAVKAAYFDGTDHWLTADEALSLGLIDGI 177


>gi|307258170|ref|ZP_07539920.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306863355|gb|EFM95288.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 675

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 74/133 (55%), Gaps = 4/133 (3%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP- 131
           K+I L+I+SPGG V  G+AI++ ++      + +  G AASM S++   G K     +P 
Sbjct: 55  KQIDLHIHSPGGSVFDGIAIFNLLKNHPANKTVYIDGLAASMASVIAMVGNK---VIMPE 111

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           NA +++H+P G   G A D+ ++A  + K++  L   Y    GKT EE+ + L  +  M+
Sbjct: 112 NAMMMIHKPWGIQGGDADDMRKYADLLDKLEATLIPAYASKTGKTEEELAQMLAVETWMN 171

Query: 192 ASEACDWGVVDKV 204
             EA + G  D++
Sbjct: 172 GKEAVEQGFADEL 184


>gi|325271030|ref|ZP_08137615.1| hypothetical protein HMPREF9141_2825 [Prevotella multiformis DSM
           16608]
 gi|324986628|gb|EGC18626.1| hypothetical protein HMPREF9141_2825 [Prevotella multiformis DSM
           16608]
          Length = 348

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 6/164 (3%)

Query: 45  VFVTGQIEDHMATLICAQLL--FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           + + G I D   T+  AQ+    + AE   K I + INS GG V  G+AI++ ++  K  
Sbjct: 18  ILLYGDIGDSYGTITSAQITRELMAAEATYKNIDVRINSIGGEVYTGIAIFNALRASKAN 77

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIK 162
           I+ +  G AASM S++   G+    +    AR++LH  SGG  G   D++     +  ++
Sbjct: 78  ITIYVDGVAASMASVIALCGKP--VYMSRYARLMLHSVSGGCYGNTRDMKDMISQMESLE 135

Query: 163 RRLNEIYVKNCGKTYEEVEKTL--DRDHIMSASEACDWGVVDKV 204
             L ++Y    GK   E++ +     DH ++A EA   G +D +
Sbjct: 136 DTLCDMYADKLGKDKAEIKSSYFDGTDHWLTAEEAKISGFIDGI 179


>gi|320654209|gb|EFX22272.1| putative protease encoded in prophage CP-933K [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320664709|gb|EFX31852.1| putative protease encoded in prophage CP-933K [Escherichia coli
           O157:H7 str. LSU-61]
          Length = 652

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 73/132 (55%), Gaps = 4/132 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
            I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G+  +   +P N
Sbjct: 39  HINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGKPVI---MPEN 95

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           + +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS 
Sbjct: 96  SFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLADETWMSG 155

Query: 193 SEACDWGVVDKV 204
           +E    G  D+V
Sbjct: 156 AECLAHGFADQV 167


>gi|239815455|ref|YP_002944365.1| peptidase S14 ClpP [Variovorax paradoxus S110]
 gi|239802032|gb|ACS19099.1| peptidase S14 ClpP [Variovorax paradoxus S110]
          Length = 227

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 70/127 (55%), Gaps = 2/127 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K + +YINSPGG V  G+AIY+ ++           G AAS+ S++  AG++ +R A  N
Sbjct: 45  KALDIYINSPGGSVFEGLAIYNQIKRFDGEKIVHVDGIAASIASVIAMAGDE-VRIA-AN 102

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
             I++H P G   G A+D+ + A+ + K++  L E YV   G   E++   +  +  M+A
Sbjct: 103 GTIMIHDPWGMAMGTAADMRKQAESLDKVRDVLLENYVARTGGKREDISSWMTAETWMNA 162

Query: 193 SEACDWG 199
            EA + G
Sbjct: 163 DEAVERG 169


>gi|168786963|ref|ZP_02811970.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC869]
 gi|261225398|ref|ZP_05939679.1| putative protease encoded in prophage CP-933K [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261258634|ref|ZP_05951167.1| putative protease encoded in prophage CP-933K [Escherichia coli
           O157:H7 str. FRIK966]
 gi|189373191|gb|EDU91607.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC869]
          Length = 652

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 73/132 (55%), Gaps = 4/132 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
            I+L INSPGG V  G+AI++ ++     I+ +  G AASM S++   G+  +   +P N
Sbjct: 39  HINLNINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGKPVI---MPEN 95

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           + +++H+P G   G A D+  +A  + K++  L  +Y +  GKT +E+   L  +  MS 
Sbjct: 96  SFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPVYAQKTGKTTDEIAAMLADETWMSG 155

Query: 193 SEACDWGVVDKV 204
           +E    G  D+V
Sbjct: 156 AECLAHGFADQV 167


>gi|194467896|ref|ZP_03073882.1| peptidase S14 ClpP [Lactobacillus reuteri 100-23]
 gi|194452749|gb|EDX41647.1| peptidase S14 ClpP [Lactobacillus reuteri 100-23]
          Length = 258

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 77/135 (57%), Gaps = 4/135 (2%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K I+L+INSPGG V  G+AIY+ ++     I+ +  G AAS+ S++  +G+    F   N
Sbjct: 55  KNINLHINSPGGSVFEGIAIYNMLKQNSAHINVYIDGLAASIASVIAMSGDA--IFMPSN 112

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE--VEKTLDRDHIM 190
           + +++H P     G A+++ + A  + +I +   + Y+   G   +E  + + +D +  +
Sbjct: 113 SMMMVHNPWVMAIGNANELRKQADALDQITKSSVQTYLAKAGDKLDEKTLTQLMDDETWL 172

Query: 191 SASEACDWGVVDKVL 205
           +A EA D+G+ D+V+
Sbjct: 173 TAQEAVDYGLADEVM 187


>gi|194433919|ref|ZP_03066191.1| ATP-dependent protease [Shigella dysenteriae 1012]
 gi|194417791|gb|EDX33888.1| ATP-dependent protease [Shigella dysenteriae 1012]
 gi|332094969|gb|EGJ00009.1| clp protease family protein [Shigella dysenteriae 155-74]
          Length = 663

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 4/131 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G       +P N 
Sbjct: 40  INLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNP---VIMPENT 96

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H+P G   G A D+  +A  + K++  L   Y +  GKT +EV   L  +  MS +
Sbjct: 97  FMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEVAAMLADETWMSGA 156

Query: 194 EACDWGVVDKV 204
           E    G  D+V
Sbjct: 157 ECLAHGFADQV 167


>gi|237738653|ref|ZP_04569134.1| peptidase S14 ClpP [Fusobacterium sp. 2_1_31]
 gi|229424136|gb|EEO39183.1| peptidase S14 ClpP [Fusobacterium sp. 2_1_31]
          Length = 358

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 76/133 (57%), Gaps = 5/133 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I+++INSPGG V A +AI +T++  K  ++ F  G AAS  +++ SA +      +P NA
Sbjct: 52  INVHINSPGGSVFAAVAIANTLKNHKAKVTAFIDGLAASAATIITSACD---VVKMPKNA 108

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYV-KNCGKTYEEVEKTLDRDHIMSA 192
             ++H P     G   ++E+    + K+K  + E Y+ K  GKT EE+   +D +   +A
Sbjct: 109 MFMIHNPLTWAYGNKQELEKTGILLDKVKDSILETYLAKAKGKTKEELSALMDEEKWFNA 168

Query: 193 SEACDWGVVDKVL 205
            EA ++G +D+++
Sbjct: 169 EEAKEYGFIDEIV 181


>gi|191169469|ref|ZP_03031204.1| ATP-dependent protease [Escherichia coli B7A]
 gi|293405047|ref|ZP_06649039.1| prophage Clp protease-like protein [Escherichia coli FVEC1412]
 gi|298380692|ref|ZP_06990291.1| prophage Clp protease-like protein [Escherichia coli FVEC1302]
 gi|300899649|ref|ZP_07117880.1| Clp protease [Escherichia coli MS 198-1]
 gi|331673132|ref|ZP_08373900.1| putative protease/scaffold protein [Escherichia coli TA280]
 gi|190900495|gb|EDV60309.1| ATP-dependent protease [Escherichia coli B7A]
 gi|291427255|gb|EFF00282.1| prophage Clp protease-like protein [Escherichia coli FVEC1412]
 gi|298278134|gb|EFI19648.1| prophage Clp protease-like protein [Escherichia coli FVEC1302]
 gi|300356774|gb|EFJ72644.1| Clp protease [Escherichia coli MS 198-1]
 gi|331069330|gb|EGI40717.1| putative protease/scaffold protein [Escherichia coli TA280]
          Length = 652

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 72/131 (54%), Gaps = 4/131 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   +   +P N+
Sbjct: 40  INLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPVI---MPENS 96

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS +
Sbjct: 97  FMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLADETWMSGA 156

Query: 194 EACDWGVVDKV 204
           E    G  D+V
Sbjct: 157 ECLAQGFADQV 167


>gi|320197734|gb|EFW72342.1| putative protease/scaffold protein [Escherichia coli EC4100B]
          Length = 652

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 71/131 (54%), Gaps = 4/131 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G       +P N+
Sbjct: 40  INLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNP---VIMPENS 96

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS +
Sbjct: 97  FMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLADETWMSGA 156

Query: 194 EACDWGVVDKV 204
           E    G  D+V
Sbjct: 157 ECLAQGFADQV 167


>gi|301025101|ref|ZP_07188695.1| Clp protease [Escherichia coli MS 69-1]
 gi|300396210|gb|EFJ79748.1| Clp protease [Escherichia coli MS 69-1]
          Length = 652

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 72/132 (54%), Gaps = 4/132 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
            I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   +   +P N
Sbjct: 39  HINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPVI---MPEN 95

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           + +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS 
Sbjct: 96  SFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLADETWMSG 155

Query: 193 SEACDWGVVDKV 204
           +E    G  D+V
Sbjct: 156 AECLAQGFADQV 167


>gi|315252308|gb|EFU32276.1| Clp protease [Escherichia coli MS 85-1]
          Length = 173

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 73/140 (52%), Gaps = 4/140 (2%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   
Sbjct: 31  LNALGDITHINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPV 90

Query: 126 MRFALP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
           +   +P N  +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L
Sbjct: 91  I---MPENTFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAML 147

Query: 185 DRDHIMSASEACDWGVVDKV 204
             +  MS +E    G  D+V
Sbjct: 148 ADETWMSGAECLAHGFADQV 167


>gi|331683048|ref|ZP_08383649.1| putative protease/scaffold protein [Escherichia coli H299]
 gi|331079263|gb|EGI50460.1| putative protease/scaffold protein [Escherichia coli H299]
          Length = 605

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 72/131 (54%), Gaps = 4/131 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   +   +P N+
Sbjct: 40  INLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPVI---MPENS 96

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS +
Sbjct: 97  FMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLADETWMSGA 156

Query: 194 EACDWGVVDKV 204
           E    G  D+V
Sbjct: 157 ECLAQGFADQV 167


>gi|320643291|gb|EFX12482.1| putative protease/scaffold protein [Escherichia coli O157:H- str.
           493-89]
 gi|320648633|gb|EFX17277.1| putative protease/scaffold protein [Escherichia coli O157:H- str. H
           2687]
 gi|323156726|gb|EFZ42864.1| clp protease family protein [Escherichia coli EPECa14]
          Length = 652

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 72/132 (54%), Gaps = 4/132 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
            I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   +   +P N
Sbjct: 39  HINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPVI---MPEN 95

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           + +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS 
Sbjct: 96  SFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLADETWMSG 155

Query: 193 SEACDWGVVDKV 204
           +E    G  D+V
Sbjct: 156 AECLAQGFADQV 167


>gi|322381666|ref|ZP_08055631.1| ATP-dependent Clp protease proteolytic subunit-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321154378|gb|EFX46689.1| ATP-dependent Clp protease proteolytic subunit-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 238

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 77/133 (57%), Gaps = 6/133 (4%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I+LYINSPGG V  G+AI++ ++  K  +       AAS+ S++  AG+    F +P N+
Sbjct: 45  INLYINSPGGSVFEGIAIHNMLKRHKANVHVHVDALAASIASVIAMAGDP---FYMPKNS 101

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK--TYEEVEKTLDRDHIMS 191
            +++H P     G AS++ + A D+ +I     ++Y++  G   + E+++  LD +  +S
Sbjct: 102 MLMIHNPWIFAWGNASEMRKIADDLDRIGNSSKQVYLQKAGDKLSDEKLQDMLDAETWLS 161

Query: 192 ASEACDWGVVDKV 204
           A EA ++G+ D V
Sbjct: 162 ADEAFEYGLCDVV 174


>gi|320179471|gb|EFW54427.1| Prophage Clp protease-like protein [Shigella boydii ATCC 9905]
          Length = 663

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 4/131 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G       +P N 
Sbjct: 40  INLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGTP---VIMPENT 96

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H+P G   G A D+  +A  + K++  L   Y +  GKT +EV   L  +  MS +
Sbjct: 97  FMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEVAAMLADETWMSGA 156

Query: 194 EACDWGVVDKV 204
           E    G  D+V
Sbjct: 157 ECLAHGFADQV 167


>gi|315252129|gb|EFU32097.1| Clp protease [Escherichia coli MS 85-1]
          Length = 240

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 72/132 (54%), Gaps = 4/132 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
            I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   +   +P N
Sbjct: 44  HINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPVI---MPEN 100

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           + +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS 
Sbjct: 101 SFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLADETWMSG 160

Query: 193 SEACDWGVVDKV 204
           +E    G  D+V
Sbjct: 161 AECLAHGFADQV 172


>gi|218561583|ref|YP_002394496.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           [Escherichia coli S88]
 gi|218368352|emb|CAR06171.2| putative ATP-dependent Clp protease proteolytic subunit
           (Endopeptidase Clp) [Escherichia coli S88]
          Length = 739

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 72/132 (54%), Gaps = 4/132 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
            I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   +   +P N
Sbjct: 126 HINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPVI---MPEN 182

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           + +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS 
Sbjct: 183 SFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLADETWMSG 242

Query: 193 SEACDWGVVDKV 204
           +E    G  D+V
Sbjct: 243 AECLAQGFADQV 254


>gi|260855281|ref|YP_003229172.1| putative protease/scaffold protein [Escherichia coli O26:H11 str.
           11368]
 gi|257753930|dbj|BAI25432.1| putative protease/scaffold protein [Escherichia coli O26:H11 str.
           11368]
          Length = 675

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 72/132 (54%), Gaps = 4/132 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
            I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   +   +P N
Sbjct: 62  HINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPVI---MPEN 118

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           + +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS 
Sbjct: 119 SFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLADETWMSG 178

Query: 193 SEACDWGVVDKV 204
           +E    G  D+V
Sbjct: 179 AECLAQGFADQV 190


>gi|117626713|ref|YP_860036.1| putative protease/scaffold protein [Escherichia coli APEC O1]
 gi|331680516|ref|ZP_08381175.1| putative protease/scaffold protein [Escherichia coli H591]
 gi|115515837|gb|ABJ03912.1| putative protease/scaffold protein [Escherichia coli APEC O1]
 gi|331071979|gb|EGI43315.1| putative protease/scaffold protein [Escherichia coli H591]
          Length = 725

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 72/132 (54%), Gaps = 4/132 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
            I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   +   +P N
Sbjct: 112 HINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPVI---MPEN 168

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           + +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS 
Sbjct: 169 SFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLADETWMSG 228

Query: 193 SEACDWGVVDKV 204
           +E    G  D+V
Sbjct: 229 AECLAQGFADQV 240


>gi|323172062|gb|EFZ57702.1| clp protease family protein [Escherichia coli LT-68]
          Length = 252

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 71/131 (54%), Gaps = 4/131 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   +   +P N 
Sbjct: 40  INLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGTPVI---MPENT 96

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H+P G   G A D+  +A  + K++  L   Y +  GKT +EV   L  +  MS +
Sbjct: 97  FMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEVAAMLADETWMSGA 156

Query: 194 EACDWGVVDKV 204
           E    G  D+V
Sbjct: 157 ECLAHGFADQV 167


>gi|312967383|ref|ZP_07781598.1| clp protease family protein [Escherichia coli 2362-75]
 gi|312287580|gb|EFR15485.1| clp protease family protein [Escherichia coli 2362-75]
          Length = 652

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 71/131 (54%), Gaps = 4/131 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   +   +P N 
Sbjct: 40  INLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPVI---MPENT 96

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS +
Sbjct: 97  FMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLADETWMSGA 156

Query: 194 EACDWGVVDKV 204
           E    G  D+V
Sbjct: 157 ECLAQGFADQV 167


>gi|324112021|gb|EGC05999.1| Clp protease [Escherichia fergusonii B253]
          Length = 652

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 4/132 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
            I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   +   +P N
Sbjct: 39  HINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPVI---MPEN 95

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
             +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS 
Sbjct: 96  TFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLADETWMSG 155

Query: 193 SEACDWGVVDKV 204
           +E    G  D+V
Sbjct: 156 AECLAHGFADQV 167


>gi|303274128|ref|XP_003056387.1| ATP-dependent clp protease [Micromonas pusilla CCMP1545]
 gi|226462471|gb|EEH59763.1| ATP-dependent clp protease [Micromonas pusilla CCMP1545]
          Length = 294

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 87/178 (48%), Gaps = 15/178 (8%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI-YDTMQFIKP 101
           RIV++   +   +  LI ++LL+++  +  +   +YINS G     G  + Y      K 
Sbjct: 87  RIVYIGMPLVPAVTELIVSELLYMQYTDATRPCYIYINSTGCQRADGEVLPYSDNANNKV 146

Query: 102 P------------ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
           P            I T   G A     ++LSAG KG RF   +A  +LHQP    +GQ  
Sbjct: 147 PHLRFAENFPLQQIYTVGTGVAIGQACMILSAGNKGKRFMTAHATAMLHQPRIPSTGQRQ 206

Query: 150 DIERH--AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            IE H   +++++ K+ + +I     G + E+++  + R   ++A +A  +G+VDKV+
Sbjct: 207 AIELHLKWKEVLEQKKAMVDILSLTTGHSKEKIDNDIQRPLYLTAKDAIAYGIVDKVV 264


>gi|161899389|ref|XP_001712921.1| Clp Protease copy 4 [Bigelowiella natans]
 gi|75756415|gb|ABA27309.1| Clp Protease copy 4 [Bigelowiella natans]
          Length = 183

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 90/176 (51%), Gaps = 10/176 (5%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD---- 94
           LL++ I++++ +I+ +      + +L+L+ +N  + I+LYIN  G       + YD    
Sbjct: 9   LLEKNILYLSTEIDFNSTKSFISTILYLKNKNSNETINLYINGKGSSYYNLFSRYDQIIS 68

Query: 95  ---TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL--HQPSGGFSGQAS 149
               +  +K  +ST  +G A +   L+ S G K  R+ALP++ + +     S G S Q S
Sbjct: 69  MHDIINSMKSKLSTLVLGIAFNEMCLISSYGSKDYRYALPSSLLYIDVFMNSIG-SSQTS 127

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           DI     ++ K    +  I+ K+  +   E+   + R   M++ EA ++G++DK++
Sbjct: 128 DIGIKKSELYKFNNLIINIFSKHTMRHPTEITSYMTRPFHMTSVEALNYGIIDKII 183


>gi|191173169|ref|ZP_03034701.1| ATP-dependent protease [Escherichia coli F11]
 gi|300992761|ref|ZP_07180038.1| Clp protease [Escherichia coli MS 200-1]
 gi|190906554|gb|EDV66161.1| ATP-dependent protease [Escherichia coli F11]
 gi|300305257|gb|EFJ59777.1| Clp protease [Escherichia coli MS 200-1]
 gi|324010861|gb|EGB80080.1| Clp protease [Escherichia coli MS 60-1]
          Length = 652

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 4/132 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
            I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   +   +P N
Sbjct: 39  HINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPVI---MPEN 95

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
             +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS 
Sbjct: 96  TFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLADETWMSG 155

Query: 193 SEACDWGVVDKV 204
           +E    G  D+V
Sbjct: 156 AECLAHGFADQV 167


>gi|148609387|ref|YP_001272518.1| putative protease/scaffold protein [Phage cdtI]
 gi|148524716|dbj|BAF63338.1| putative protease/scaffold protein [Phage cdtI]
          Length = 652

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 4/132 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
            I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   +   +P N
Sbjct: 39  HINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPVI---MPEN 95

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
             +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS 
Sbjct: 96  TFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLADETWMSG 155

Query: 193 SEACDWGVVDKV 204
           +E    G  D+V
Sbjct: 156 AECLAQGFADQV 167


>gi|218705045|ref|YP_002412564.1| putative ATP-dependent Clp protease proteolytic subunit
           (Endopeptidase Clp) [Escherichia coli UMN026]
 gi|218432142|emb|CAR13030.1| putative ATP-dependent Clp protease proteolytic subunit
           (Endopeptidase Clp) [Escherichia coli UMN026]
          Length = 706

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 72/132 (54%), Gaps = 4/132 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
            I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   +   +P N
Sbjct: 93  HINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPVI---MPEN 149

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           + +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS 
Sbjct: 150 SFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLADETWMSG 209

Query: 193 SEACDWGVVDKV 204
           +E    G  D+V
Sbjct: 210 AECLAQGFADQV 221


>gi|324117952|gb|EGC11851.1| Clp protease [Escherichia coli E1167]
          Length = 652

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 4/132 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
            I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   +   +P N
Sbjct: 39  HINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPVI---MPEN 95

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
             +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS 
Sbjct: 96  TFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLADETWMSG 155

Query: 193 SEACDWGVVDKV 204
           +E    G  D+V
Sbjct: 156 AECLAHGFADQV 167


>gi|323161352|gb|EFZ47259.1| clp protease family protein [Escherichia coli E128010]
          Length = 652

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 4/132 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
            I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   +   +P N
Sbjct: 39  HINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPVI---MPEN 95

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
             +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS 
Sbjct: 96  TFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLADETWMSG 155

Query: 193 SEACDWGVVDKV 204
           +E    G  D+V
Sbjct: 156 AECLAHGFADQV 167


>gi|309798015|ref|ZP_07692392.1| Clp protease [Escherichia coli MS 145-7]
 gi|308118391|gb|EFO55653.1| Clp protease [Escherichia coli MS 145-7]
          Length = 652

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 4/132 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
            I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   +   +P N
Sbjct: 39  HINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPVI---MPEN 95

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
             +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS 
Sbjct: 96  TFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLADETWMSG 155

Query: 193 SEACDWGVVDKV 204
           +E    G  D+V
Sbjct: 156 AECLAQGFADQV 167


>gi|296102058|ref|YP_003612204.1| ATP-dependent protease [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295056517|gb|ADF61255.1| ATP-dependent protease [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 638

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 74/133 (55%), Gaps = 4/133 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
            I+L+I+SPGG V  G+AIY+ +      ++    G AASM S++  AG+   R  +P N
Sbjct: 46  HINLHIHSPGGDVFDGIAIYNLLNKHPAKVTVQIDGLAASMASVIAMAGD---RIVMPEN 102

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A +++H+P G   G A+D+  +A+ + K++  L   Y +  GK+ E + + L+ +  M  
Sbjct: 103 ALMMIHKPWGISGGNANDMRDYAELLDKVESVLIPAYARKTGKSAESLAEMLEDETWMDG 162

Query: 193 SEACDWGVVDKVL 205
            E    G  D++L
Sbjct: 163 RECVAQGFADELL 175


>gi|323190376|gb|EFZ75652.1| clp protease family protein [Escherichia coli RN587/1]
          Length = 652

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 4/132 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
            I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   +   +P N
Sbjct: 39  HINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPVI---MPEN 95

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
             +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS 
Sbjct: 96  TFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLADETWMSG 155

Query: 193 SEACDWGVVDKV 204
           +E    G  D+V
Sbjct: 156 AECLAHGFADQV 167


>gi|312946146|gb|ADR26973.1| putative ATP-dependent Clp protease proteolytic subunit
           (Endopeptidase Clp) [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315614576|gb|EFU95219.1| clp protease family protein [Escherichia coli 3431]
          Length = 652

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 4/132 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
            I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   +   +P N
Sbjct: 39  HINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPVI---MPEN 95

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
             +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS 
Sbjct: 96  TFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLADETWMSG 155

Query: 193 SEACDWGVVDKV 204
           +E    G  D+V
Sbjct: 156 AECLAHGFADQV 167


>gi|301301732|ref|ZP_07207867.1| Clp protease [Escherichia coli MS 124-1]
 gi|300843229|gb|EFK70989.1| Clp protease [Escherichia coli MS 124-1]
          Length = 652

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 4/132 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
            I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   +   +P N
Sbjct: 39  HINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPVI---MPEN 95

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
             +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS 
Sbjct: 96  TFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLADETWMSG 155

Query: 193 SEACDWGVVDKV 204
           +E    G  D+V
Sbjct: 156 AECLAHGFADQV 167


>gi|331652921|ref|ZP_08353926.1| putative protease/scaffold protein [Escherichia coli M718]
 gi|331049019|gb|EGI21091.1| putative protease/scaffold protein [Escherichia coli M718]
          Length = 639

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 4/132 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
            I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G       +P N
Sbjct: 112 HINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNP---VIMPEN 168

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
             +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS 
Sbjct: 169 TFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLADETWMSG 228

Query: 193 SEACDWGVVDKV 204
           +E    G  D+V
Sbjct: 229 AECLAHGFADQV 240


>gi|193066999|ref|ZP_03047968.1| ATP-dependent protease [Escherichia coli E110019]
 gi|192959589|gb|EDV90023.1| ATP-dependent protease [Escherichia coli E110019]
          Length = 652

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 4/132 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
            I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   +   +P N
Sbjct: 39  HINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPVI---MPEN 95

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
             +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS 
Sbjct: 96  TFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLADETWMSG 155

Query: 193 SEACDWGVVDKV 204
           +E    G  D+V
Sbjct: 156 AECLAQGFADQV 167


>gi|194426733|ref|ZP_03059286.1| ATP-dependent protease [Escherichia coli B171]
 gi|194429906|ref|ZP_03062417.1| ATP-dependent protease [Escherichia coli B171]
 gi|194412062|gb|EDX28373.1| ATP-dependent protease [Escherichia coli B171]
 gi|194415069|gb|EDX31338.1| ATP-dependent protease [Escherichia coli B171]
          Length = 652

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 4/132 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
            I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   +   +P N
Sbjct: 39  HINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPVI---MPEN 95

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
             +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS 
Sbjct: 96  TFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLADETWMSG 155

Query: 193 SEACDWGVVDKV 204
           +E    G  D+V
Sbjct: 156 AECLAHGFADQV 167


>gi|315253278|gb|EFU33246.1| Clp protease [Escherichia coli MS 85-1]
          Length = 606

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 71/131 (54%), Gaps = 4/131 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   +   +P N 
Sbjct: 40  INLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPVI---MPENT 96

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS +
Sbjct: 97  FMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLADETWMSGA 156

Query: 194 EACDWGVVDKV 204
           E    G  D+V
Sbjct: 157 ECLAQGFADQV 167


>gi|320195896|gb|EFW70521.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           WV_060327]
          Length = 652

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 4/132 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
            I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   +   +P N
Sbjct: 39  HINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPVI---MPEN 95

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
             +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS 
Sbjct: 96  TFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLADETWMSG 155

Query: 193 SEACDWGVVDKV 204
           +E    G  D+V
Sbjct: 156 AECLAHGFADQV 167


>gi|294490162|gb|ADE88918.1| gifsy-2 prophage Clp protease-like protein [Escherichia coli
           IHE3034]
          Length = 675

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 4/132 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
            I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   +   +P N
Sbjct: 62  HINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPVI---MPEN 118

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
             +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS 
Sbjct: 119 TFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLADETWMSG 178

Query: 193 SEACDWGVVDKV 204
           +E    G  D+V
Sbjct: 179 AECLAHGFADQV 190


>gi|126207994|ref|YP_001053219.1| putative Clp-like protease [Actinobacillus pleuropneumoniae L20]
 gi|190149760|ref|YP_001968285.1| Clp-like protease [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|126096786|gb|ABN73614.1| putative Clp-like protease [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
 gi|189914891|gb|ACE61143.1| putative Clp-like protease [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
          Length = 674

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 76/136 (55%), Gaps = 4/136 (2%)

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           N  K+I+L+I+SPGG V  G+AIY+ ++      + +  G AASM S++  AG +     
Sbjct: 63  NNLKQINLHIHSPGGDVFDGIAIYNLLKNHPANKTVYIDGLAASMASVIAMAGNE---II 119

Query: 130 LP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +P NA +++H+P G   G A D+ ++A  + K++  L   YV    K+ EE+ + L  + 
Sbjct: 120 MPENAMMMIHKPWGIQGGDADDMRKYADLLDKVESTLIMAYVAKTEKSEEELAEMLKEET 179

Query: 189 IMSASEACDWGVVDKV 204
            ++  E  + G  DK+
Sbjct: 180 WLTGKECVEQGFADKL 195


>gi|91214065|ref|YP_544051.1| putative protease/scaffold protein [Escherichia coli UTI89]
 gi|91075639|gb|ABE10520.1| putative protease/scaffold protein [Escherichia coli UTI89]
          Length = 707

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 4/132 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
            I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   +   +P N
Sbjct: 94  HINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPVI---MPEN 150

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
             +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS 
Sbjct: 151 TFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLADETWMSG 210

Query: 193 SEACDWGVVDKV 204
           +E    G  D+V
Sbjct: 211 AECLAHGFADQV 222


>gi|222033305|emb|CAP76045.1| ATP-dependent Clp protease proteolyticsubunit( end opeptidase Clp)
           [Escherichia coli LF82]
          Length = 707

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 4/132 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
            I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   +   +P N
Sbjct: 94  HINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPVI---MPEN 150

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
             +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS 
Sbjct: 151 TFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLADETWMSG 210

Query: 193 SEACDWGVVDKV 204
           +E    G  D+V
Sbjct: 211 AECLAHGFADQV 222


>gi|218551656|ref|YP_002385448.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           [Escherichia fergusonii ATCC 35469]
 gi|218359198|emb|CAQ91863.2| putative ATP-dependent Clp protease proteolytic subunit
           (Endopeptidase Clp) [Escherichia fergusonii ATCC 35469]
          Length = 739

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 4/132 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
            I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   +   +P N
Sbjct: 126 HINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPVI---MPEN 182

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
             +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS 
Sbjct: 183 TFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLADETWMSG 242

Query: 193 SEACDWGVVDKV 204
           +E    G  D+V
Sbjct: 243 AECLAHGFADQV 254


>gi|218695107|ref|YP_002402774.1| putative ATP-dependent Clp protease proteolytic subunit
           (Endopeptidase Clp) [Escherichia coli 55989]
 gi|218351839|emb|CAU97558.1| putative ATP-dependent Clp protease proteolytic subunit
           (Endopeptidase Clp) [Escherichia coli 55989]
          Length = 739

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 4/132 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
            I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   +   +P N
Sbjct: 126 HINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPVI---MPEN 182

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
             +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS 
Sbjct: 183 TFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLADETWMSG 242

Query: 193 SEACDWGVVDKV 204
           +E    G  D+V
Sbjct: 243 AECLAHGFADQV 254


>gi|215486155|ref|YP_002328586.1| predicted protease/scaffold protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|215264227|emb|CAS08571.1| predicted protease/scaffold protein [Escherichia coli O127:H6 str.
           E2348/69]
          Length = 696

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 4/132 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
            I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   +   +P N
Sbjct: 83  HINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPVI---MPEN 139

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
             +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS 
Sbjct: 140 TFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLADETWMSG 199

Query: 193 SEACDWGVVDKV 204
           +E    G  D+V
Sbjct: 200 AECLAQGFADQV 211


>gi|300902358|ref|ZP_07120346.1| Clp protease [Escherichia coli MS 84-1]
 gi|300405561|gb|EFJ89099.1| Clp protease [Escherichia coli MS 84-1]
          Length = 168

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 73/140 (52%), Gaps = 4/140 (2%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   
Sbjct: 31  LNALGDITHINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNP- 89

Query: 126 MRFALP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
               +P N+ +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L
Sbjct: 90  --VIMPENSFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAML 147

Query: 185 DRDHIMSASEACDWGVVDKV 204
             +  MS +E    G  D++
Sbjct: 148 ADETWMSGAECLAHGFADQL 167


>gi|218703100|ref|YP_002410729.1| putative ATP-dependent Clp protease proteolytic subunit
           [Escherichia coli IAI39]
 gi|218373086|emb|CAR20978.1| putative ATP-dependent Clp protease proteolytic subunit
           (Endopeptidase Clp) [Escherichia coli IAI39]
          Length = 707

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 4/132 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
            I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   +   +P N
Sbjct: 94  HINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPVI---MPEN 150

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
             +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS 
Sbjct: 151 TFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLADETWMSG 210

Query: 193 SEACDWGVVDKV 204
           +E    G  D+V
Sbjct: 211 AECLAHGFADQV 222


>gi|288927924|ref|ZP_06421771.1| ATP-dependent Clp protease proteolytic subunit [Prevotella sp. oral
           taxon 317 str. F0108]
 gi|288330758|gb|EFC69342.1| ATP-dependent Clp protease proteolytic subunit [Prevotella sp. oral
           taxon 317 str. F0108]
          Length = 369

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 83/148 (56%), Gaps = 6/148 (4%)

Query: 59  ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLL 118
           + A+L+ L+++  +  I + INS GG V +G+AIY+ ++  K  I+ +  G AAS+  ++
Sbjct: 34  VVAELMALQSQYSK--IDVRINSRGGDVFSGIAIYNALRTSKADITVYIDGVAASIAGII 91

Query: 119 LSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYE 178
              G+    +  P A+++LH  SGG  G AS++ + A+ +  ++  L  +    CG   +
Sbjct: 92  ALCGKP--LYMSPYAKLMLHAVSGGTWGNASELRQMAEVMENLQGDLASMIAGRCGMKKD 149

Query: 179 EV-EKTLD-RDHIMSASEACDWGVVDKV 204
           EV  K  D +DH +SA EA    ++D +
Sbjct: 150 EVLAKYFDEKDHWISAQEALSMKLIDGI 177


>gi|320172939|gb|EFW48168.1| ATP-dependent Clp protease proteolytic subunit [Shigella
           dysenteriae CDC 74-1112]
 gi|332098988|gb|EGJ03935.1| clp protease family protein [Shigella dysenteriae 155-74]
          Length = 652

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 4/132 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
            I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   +   +P N
Sbjct: 39  HINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGTPVI---MPEN 95

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
             +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS 
Sbjct: 96  TFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLADETWMSG 155

Query: 193 SEACDWGVVDKV 204
           +E    G  D+V
Sbjct: 156 AECLAHGFADQV 167


>gi|315293048|gb|EFU52400.1| Clp protease [Escherichia coli MS 153-1]
          Length = 653

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 4/132 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
            I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   +   +P N
Sbjct: 39  HINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPVI---MPEN 95

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
             +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS 
Sbjct: 96  TFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLVDETWMSG 155

Query: 193 SEACDWGVVDKV 204
           +E    G  D+V
Sbjct: 156 AECLAHGFADQV 167


>gi|324021013|gb|EGB90232.1| Clp protease [Escherichia coli MS 117-3]
          Length = 652

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 4/132 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
            I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   +   +P N
Sbjct: 39  HINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPVI---MPEN 95

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
             +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS 
Sbjct: 96  TFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLVDETWMSG 155

Query: 193 SEACDWGVVDKV 204
           +E    G  D+V
Sbjct: 156 AECLAHGFADQV 167


>gi|312971303|ref|ZP_07785481.1| clp protease family protein [Escherichia coli 1827-70]
 gi|310336505|gb|EFQ01691.1| clp protease family protein [Escherichia coli 1827-70]
          Length = 652

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 4/132 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
            I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G       +P N
Sbjct: 39  HINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNP---VIMPEN 95

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
             +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS 
Sbjct: 96  TFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAVMLADETWMSG 155

Query: 193 SEACDWGVVDKV 204
           +E    G  D+V
Sbjct: 156 AECLAHGFADQV 167


>gi|163800611|ref|ZP_02194512.1| putative protease/scaffold protein [Vibrio sp. AND4]
 gi|159176054|gb|EDP60848.1| putative protease/scaffold protein [Vibrio sp. AND4]
          Length = 670

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 84/164 (51%), Gaps = 10/164 (6%)

Query: 45  VFVTGQIE--DHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           V+V G I   D  AT I A L   +     KE+ L + S GG V  G+A+Y+ ++  K  
Sbjct: 20  VWVHGDISAYDIDATEIIAALQVADG----KEVELRMLSGGGSVYQGLAMYNALKAHKGK 75

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALP-NARILLHQPSGGFSGQASDIERHAQDIVKI 161
           +     G AAS+ + +L A +      +P NA +++H PS G  G   +I    Q +   
Sbjct: 76  VVGIVDGMAASIATYVLLACDS---IRMPENAMLMIHNPSIGAWGGEKEINSALQQLQAA 132

Query: 162 KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            + ++E YV+  G+  E+V   ++ +   +A  A DWG+VD+V+
Sbjct: 133 TKTISEAYVEKSGQPLEDVLTAMESETWFTAQAAKDWGLVDEVV 176


>gi|298386342|ref|ZP_06995898.1| protease [Bacteroides sp. 1_1_14]
 gi|298260719|gb|EFI03587.1| protease [Bacteroides sp. 1_1_14]
          Length = 358

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 83/166 (50%), Gaps = 10/166 (6%)

Query: 45  VFVTGQIEDHMATLICAQLL--FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           + + G I D+   +    +    LEAE     I + INS GG V AG+AI++ ++  K  
Sbjct: 30  ILLYGDIGDYDGNVRSGDIARELLEAEALSGRIDVRINSNGGEVYAGIAIFNALKNSKAD 89

Query: 103 ISTFCMGQAASMGSLLLSAGE--KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
           I+ +  G AASM S++   G+  +  R+    AR++LH   GG  G   ++    ++I  
Sbjct: 90  ITIYVDGIAASMASVIALCGKPVQMSRY----ARLMLHSVQGGCYGNKEEMRGCIREIES 145

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTL--DRDHIMSASEACDWGVVDKV 204
           ++  L E+Y    GK  EE+       +DH + A EA   G++D +
Sbjct: 146 LEDTLCEMYAARMGKDKEEIRSLYFDGKDHWLRADEALALGLIDGI 191


>gi|254361891|ref|ZP_04978025.1| S14 family bacteriophage protease [Mannheimia haemolytica PHL213]
 gi|153093430|gb|EDN74421.1| S14 family bacteriophage protease [Mannheimia haemolytica PHL213]
          Length = 653

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 76/136 (55%), Gaps = 4/136 (2%)

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           N  K+I+L+I+SPGG V  G+AIY+ ++      + +  G AASM S++  AG++     
Sbjct: 42  NNLKQINLHIHSPGGDVFDGIAIYNLLKNHPANKTVYIDGLAASMASVIAMAGDE---II 98

Query: 130 LP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +P NA +++H+P G   G A D+ ++A  + K++  L   YV   GK   ++ + L  + 
Sbjct: 99  MPENAMMMIHKPWGIQGGDADDMRKYADLLDKVESTLIMAYVAKTGKYETDLAEMLKEET 158

Query: 189 IMSASEACDWGVVDKV 204
            ++  E  + G  DK+
Sbjct: 159 WLTGKECVEQGFADKL 174


>gi|167461037|ref|ZP_02326126.1| serine protease (phage related-protein, ClpP family) [Paenibacillus
           larvae subsp. larvae BRL-230010]
          Length = 238

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 77/133 (57%), Gaps = 6/133 (4%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I+LYINSPGG V  G+AI++ ++  K  +  +    AAS+ S++  AG+      +P N+
Sbjct: 45  INLYINSPGGSVFEGIAIHNMLKRHKANVHVYVDALAASIASVIAMAGDT---IYMPKNS 101

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK--TYEEVEKTLDRDHIMS 191
            +++H P     G AS++ + A D+ +I     + Y++  G   + E++++ LD +  +S
Sbjct: 102 MLMIHNPWIFAWGNASEMRKIADDLDRIGNSSKQTYLQKAGDKLSDEKLQEMLDAETWLS 161

Query: 192 ASEACDWGVVDKV 204
           A EA ++G+ D V
Sbjct: 162 ADEAFEYGLCDVV 174


>gi|307245367|ref|ZP_07527455.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307254322|ref|ZP_07536160.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258780|ref|ZP_07540512.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306853708|gb|EFM85925.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306862621|gb|EFM94577.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867131|gb|EFM98987.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 652

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 76/136 (55%), Gaps = 4/136 (2%)

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           N  K+I+L+I+SPGG V  G+AIY+ ++      + +  G AASM S++  AG +     
Sbjct: 41  NNLKQINLHIHSPGGDVFDGIAIYNLLKNHPANKTVYIDGLAASMASVIAMAGNE---II 97

Query: 130 LP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +P NA +++H+P G   G A D+ ++A  + K++  L   YV   GK+  ++ + L  + 
Sbjct: 98  MPENAMMMIHKPWGIQGGDADDMRKYADLLDKVESTLIMAYVAKTGKSESDLAEMLKVET 157

Query: 189 IMSASEACDWGVVDKV 204
            ++  E  + G  DK+
Sbjct: 158 WLTGKECVEQGFADKL 173


>gi|168757092|ref|ZP_02782099.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC4401]
 gi|189355896|gb|EDU74315.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC4401]
          Length = 652

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 72/132 (54%), Gaps = 4/132 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
            I+L INSPGG V  G+AI++ ++     I+ +  G AASM S++   G+  +   +P N
Sbjct: 39  HINLNINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGKPVI---MPEN 95

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           + +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS 
Sbjct: 96  SFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLADETWMSG 155

Query: 193 SEACDWGVVDKV 204
           +E    G  D+V
Sbjct: 156 AECLAHGFADQV 167


>gi|168750296|ref|ZP_02775318.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC4113]
 gi|168763393|ref|ZP_02788400.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC4501]
 gi|168767249|ref|ZP_02792256.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC4486]
 gi|168776451|ref|ZP_02801458.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC4196]
 gi|168779292|ref|ZP_02804299.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC4076]
 gi|168800764|ref|ZP_02825771.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC508]
 gi|195936790|ref|ZP_03082172.1| putative protease/scaffold protein [Escherichia coli O157:H7 str.
           EC4024]
 gi|208807803|ref|ZP_03250140.1| Clp protease domain protein [Escherichia coli O157:H7 str. EC4206]
 gi|208816401|ref|ZP_03257580.1| Clp protease domain protein [Escherichia coli O157:H7 str. EC4045]
 gi|208822227|ref|ZP_03262546.1| Clp protease domain protein [Escherichia coli O157:H7 str. EC4042]
 gi|209397527|ref|YP_002269422.1| Clp protease domain protein [Escherichia coli O157:H7 str. EC4115]
 gi|217326328|ref|ZP_03442412.1| Clp protease domain protein [Escherichia coli O157:H7 str. TW14588]
 gi|254791946|ref|YP_003076783.1| putative protease encoded in prophage CP-933K [Escherichia coli
           O157:H7 str. TW14359]
 gi|187768186|gb|EDU32030.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC4196]
 gi|188015533|gb|EDU53655.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC4113]
 gi|189003055|gb|EDU72041.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC4076]
 gi|189363580|gb|EDU81999.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC4486]
 gi|189366473|gb|EDU84889.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC4501]
 gi|189376949|gb|EDU95365.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC508]
 gi|208727604|gb|EDZ77205.1| Clp protease domain protein [Escherichia coli O157:H7 str. EC4206]
 gi|208733049|gb|EDZ81737.1| Clp protease domain protein [Escherichia coli O157:H7 str. EC4045]
 gi|208737712|gb|EDZ85395.1| Clp protease domain protein [Escherichia coli O157:H7 str. EC4042]
 gi|209158927|gb|ACI36360.1| Clp protease domain protein [Escherichia coli O157:H7 str. EC4115]
 gi|217322549|gb|EEC30973.1| Clp protease domain protein [Escherichia coli O157:H7 str. TW14588]
 gi|254591346|gb|ACT70707.1| putative protease encoded in prophage CP-933K [Escherichia coli
           O157:H7 str. TW14359]
 gi|326347959|gb|EGD71672.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O157:H7 str. 1044]
          Length = 652

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 72/132 (54%), Gaps = 4/132 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
            I+L INSPGG V  G+AI++ ++     I+ +  G AASM S++   G+  +   +P N
Sbjct: 39  HINLNINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGKPVI---MPEN 95

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           + +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS 
Sbjct: 96  SFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLADETWMSG 155

Query: 193 SEACDWGVVDKV 204
           +E    G  D+V
Sbjct: 156 AECLAHGFADQV 167


>gi|320193194|gb|EFW67834.1| putative protease/scaffold protein [Escherichia coli O157:H7 str.
           EC1212]
          Length = 652

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 72/132 (54%), Gaps = 4/132 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
            I+L INSPGG V  G+AI++ ++     I+ +  G AASM S++   G+  +   +P N
Sbjct: 39  HINLNINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGKPVI---MPEN 95

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           + +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS 
Sbjct: 96  SFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLADETWMSG 155

Query: 193 SEACDWGVVDKV 204
           +E    G  D+V
Sbjct: 156 AECLAHGFADQV 167


>gi|326345681|gb|EGD69420.1| putative protease/scaffold protein [Escherichia coli O157:H7 str.
           1125]
          Length = 652

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 72/132 (54%), Gaps = 4/132 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
            I+L INSPGG V  G+AI++ ++     I+ +  G AASM S++   G+  +   +P N
Sbjct: 39  HINLNINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGKPVI---MPEN 95

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           + +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS 
Sbjct: 96  SFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLADETWMSG 155

Query: 193 SEACDWGVVDKV 204
           +E    G  D+V
Sbjct: 156 AECLAHGFADQV 167


>gi|757799|emb|CAA59932.1| ATP dependent casein protease [Campylobacter jejuni]
          Length = 49

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/48 (60%), Positives = 40/48 (83%)

Query: 18 LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF 65
           +P V+E+++RGERSYDIYSRLLK+RI+ ++G+I D +A  I AQLLF
Sbjct: 2  FIPYVIEKSSRGERSYDIYSRLLKDRIIMLSGEIHDELAASIVAQLLF 49


>gi|313123951|ref|YP_004034210.1| ATP-dependent clp protease proteolytic subunit [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312280514|gb|ADQ61233.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 244

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 76/136 (55%), Gaps = 6/136 (4%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP- 131
           K I+L+INSPGG V  G+AIY+ ++  K  I+ +  G AAS+ S++  AG       +P 
Sbjct: 51  KTINLHINSPGGDVFEGVAIYNMLKQSKADINVYIDGLAASIASVIAMAGN---TIIMPE 107

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYV--KNCGKTYEEVEKTLDRDHI 189
           N+ +++H P     G + ++ + A D+ K+   +   Y+   N     + + + +D +  
Sbjct: 108 NSMLMIHNPWTIAQGNSKELRKIADDMDKMSESIKTSYLSKSNDKLDLDTLNQLMDEETW 167

Query: 190 MSASEACDWGVVDKVL 205
           ++A EA ++G+ D+VL
Sbjct: 168 LTAKEATEYGLADEVL 183


>gi|296085707|emb|CBI29506.3| unnamed protein product [Vitis vinifera]
          Length = 159

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 50/129 (38%), Positives = 76/129 (58%), Gaps = 9/129 (6%)

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ--------PS 141
           +AI    +++K PI T C+G A    +LLL+AG KG R ALP++ I++ Q        P 
Sbjct: 28  LAIIFCSRYVKSPIFTLCIGNAWGEAALLLAAGAKGNRSALPSSTIVIKQSCPPINLHPI 87

Query: 142 GGFSGQASDIERHAQDIVK-IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
             F GQA+DI+  A+  VK +K  L ++Y K  GK+ E++E  + R    S S A ++G+
Sbjct: 88  ARFQGQATDIDHLARKEVKNVKAELVKLYAKPMGKSPEQIEADIRRPKYFSPSGAVEYGI 147

Query: 201 VDKVLMSRI 209
           +DKVL + I
Sbjct: 148 IDKVLYNEI 156


>gi|228987127|ref|ZP_04147251.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|229156200|ref|ZP_04284297.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           ATCC 4342]
 gi|228627271|gb|EEK84001.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           ATCC 4342]
 gi|228772581|gb|EEM21023.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 197

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 74/127 (58%), Gaps = 6/127 (4%)

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +  +++Y+NS GG V AG+AIY+ ++  K   + +  G AAS+ S++  AG+   R  +P
Sbjct: 15  KSNLNIYVNSGGGSVFAGLAIYNMLKRNKAQKTVYVDGVAASIASVIALAGD---RVVVP 71

Query: 132 -NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC--GKTYEEVEKTLDRDH 188
            NA +++H+P    +G A D  + A+D+  I+  +  +Y +N   G   EE+++ +D + 
Sbjct: 72  SNAFLMIHKPWTYAAGNAIDFRKAAEDLDNIESGIMNVYKENLKEGVEIEEIQQLVDAET 131

Query: 189 IMSASEA 195
            +S  EA
Sbjct: 132 WLSGEEA 138


>gi|15800503|ref|NP_286515.1| putative protease encoded in prophage CP-933K [Escherichia coli
           O157:H7 EDL933]
 gi|12513735|gb|AAG55123.1|AE005257_2 putative protease encoded in prophage CP-933K [Escherichia coli
           O157:H7 str. EDL933]
          Length = 675

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 72/132 (54%), Gaps = 4/132 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
            I+L INSPGG V  G+AI++ ++     I+ +  G AASM S++   G+  +   +P N
Sbjct: 62  HINLNINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGKPVI---MPEN 118

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           + +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS 
Sbjct: 119 SFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLADETWMSG 178

Query: 193 SEACDWGVVDKV 204
           +E    G  D+V
Sbjct: 179 AECLAHGFADQV 190


>gi|15801553|ref|NP_287570.1| putative ClpP-like protease encoded within prophage CP-933O
           [Escherichia coli O157:H7 EDL933]
 gi|12515064|gb|AAG56182.1|AE005347_14 putative ClpP-like protease encoded within prophage CP-933O
           [Escherichia coli O157:H7 str. EDL933]
          Length = 265

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 70/127 (55%), Gaps = 4/127 (3%)

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NARILL 137
           INSPGG V  G+AI++ ++     I+ +  G AASM S++  AG+  +   +P NA +++
Sbjct: 13  INSPGGDVFEGIAIFNALKNQGATITVYVDGVAASMASVIAMAGDTVI---MPENAFMMI 69

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS +E   
Sbjct: 70  HKPWGFSGGDAEDMRSYADLLDKVESVLLPAYAQKTGKTTDEIAAMLADETWMSGAECLA 129

Query: 198 WGVVDKV 204
            G  D+V
Sbjct: 130 HGFADQV 136


>gi|238568809|ref|XP_002386506.1| hypothetical protein MPER_15208 [Moniliophthora perniciosa FA553]
 gi|215438682|gb|EEB87436.1| hypothetical protein MPER_15208 [Moniliophthora perniciosa FA553]
          Length = 80

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/70 (48%), Positives = 48/70 (68%), Gaps = 7/70 (10%)

Query: 143 GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV-------EKTLDRDHIMSASEA 195
           G SGQA+DI  HA++I++I++ L  IY K+CGK  E V       EK L+RD+ M+A EA
Sbjct: 1   GASGQATDIAIHAKEILRIRKLLTSIYQKHCGKPGESVADGLDRFEKALERDYFMTAQEA 60

Query: 196 CDWGVVDKVL 205
            D+G+VD +L
Sbjct: 61  VDFGIVDAIL 70


>gi|15830083|ref|NP_308856.1| protease/scaffold protein [Escherichia coli O157:H7 str. Sakai]
 gi|13360288|dbj|BAB34252.1| putative protease/scaffold protein [Escherichia coli O157:H7 str.
           Sakai]
          Length = 707

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 72/132 (54%), Gaps = 4/132 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
            I+L INSPGG V  G+AI++ ++     I+ +  G AASM S++   G+  +   +P N
Sbjct: 94  HINLNINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGKPVI---MPEN 150

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           + +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS 
Sbjct: 151 SFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLADETWMSG 210

Query: 193 SEACDWGVVDKV 204
           +E    G  D+V
Sbjct: 211 AECLAHGFADQV 222


>gi|24374490|ref|NP_718533.1| ClpP protease family protein [Shewanella oneidensis MR-1]
 gi|24349072|gb|AAN55977.1|AE015735_11 ClpP protease family protein [Shewanella oneidensis MR-1]
          Length = 284

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 72/134 (53%)

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K++++YINSPGG +  G+AIY+ ++  K  ++T  +G AAS  S++  AGE   RF   
Sbjct: 69  EKDVTVYINSPGGDMFEGIAIYNRLREHKGKVTTKVLGLAASAASVIYMAGEDDARFVAS 128

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           +A +++H       G    +   A D+ +    + ++YV+ CG++ + +   +D +  + 
Sbjct: 129 SAFLMIHNCWVFAIGNRHALRNIADDMEEFDAAMVDLYVEGCGQSEKVIATMMDEETFIR 188

Query: 192 ASEACDWGVVDKVL 205
             +A + G     L
Sbjct: 189 GKKAVELGFAADTL 202


>gi|322835204|ref|YP_004215230.1| peptidase S14 ClpP [Rahnella sp. Y9602]
 gi|321170405|gb|ADW76103.1| peptidase S14 ClpP [Rahnella sp. Y9602]
          Length = 676

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 79/149 (53%), Gaps = 12/149 (8%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
            I+L+I+SPGG V  G+AIY+ +       + +  G AASM S++   G       +P N
Sbjct: 63  HINLHIHSPGGDVFDGIAIYNLLNSHTASKTVYIDGLAASMASVIAMVGNP---IIMPEN 119

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A +++H+P G   G A+D+  +A  + K++  L   Y K  GKT +E+   L  +  M+A
Sbjct: 120 AMMMIHKPWGITGGDANDMRDYADLLDKVEAVLIPSYAKKTGKTPDELALMLGEETWMTA 179

Query: 193 SEACDWGVVDKV-----LMSRID---IEE 213
            E  + G  D++      M+RI+   IEE
Sbjct: 180 QECLEHGFADQISTAVQAMARINSKRIEE 208


>gi|238791540|ref|ZP_04635178.1| ATP-dependent Clp protease proteolytic subunit [Yersinia intermedia
           ATCC 29909]
 gi|238729156|gb|EEQ20672.1| ATP-dependent Clp protease proteolytic subunit [Yersinia intermedia
           ATCC 29909]
          Length = 647

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/148 (33%), Positives = 79/148 (53%), Gaps = 12/148 (8%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I+L I+SPGG V  G+AIY+ +       + +  G AASM S++   G       +P NA
Sbjct: 40  INLRIHSPGGDVFEGIAIYNLLNTHPASKTVYIDGLAASMASVIAMVGNP---VIMPENA 96

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H+P G   G A+D+  +A  + K++  L   Y K  GKT EE+   L  +  ++A 
Sbjct: 97  MMMIHKPWGITGGDANDMRDYADLLDKVEGVLIPSYAKKTGKTPEELAVMLGEETWLTAQ 156

Query: 194 EACDWGVVDKVL-----MSRID---IEE 213
           E  + G  D++L     M+RI+   IEE
Sbjct: 157 ECVEHGFADQLLPSMQAMARINSKRIEE 184


>gi|218235172|ref|YP_002367332.1| Clp protease [Bacillus cereus B4264]
 gi|218163129|gb|ACK63121.1| Clp protease [Bacillus cereus B4264]
          Length = 197

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 74/127 (58%), Gaps = 6/127 (4%)

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +  +++Y+NS GG V AG+AIY+ ++  K   + +  G AAS+ S++  AG+   R  +P
Sbjct: 15  KSNLNIYVNSGGGSVFAGLAIYNMLKRNKAQKTVYVDGVAASIASVIALAGD---RVVVP 71

Query: 132 -NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC--GKTYEEVEKTLDRDH 188
            NA +++H+P    +G A D  + A+D+  I+  +  +Y +N   G   EE+++ +D + 
Sbjct: 72  SNAFLMIHKPWTYAAGNAIDFRKAAEDLDNIESGIMNVYKENLKEGIEIEEIQQLVDAET 131

Query: 189 IMSASEA 195
            +S  EA
Sbjct: 132 WLSGEEA 138


>gi|120599284|ref|YP_963858.1| peptidase S14, ClpP [Shewanella sp. W3-18-1]
 gi|120559377|gb|ABM25304.1| peptidase S14, ClpP [Shewanella sp. W3-18-1]
          Length = 284

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 72/134 (53%)

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K++++YINSPGG +  G+AIY+ ++  K  ++T  +G AAS  S++  AGE   RF   
Sbjct: 69  EKDVTVYINSPGGDMFEGIAIYNRLREHKGKVTTKVLGLAASAASVIYMAGEDDARFVAS 128

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           +A +++H       G    +   A D+ +    + ++YV+ CG++ + +   +D +  + 
Sbjct: 129 SAFLMIHNCWVFAIGNRHALRNIADDMEEFDAAMVDLYVEGCGQSEKVIATMMDEETFIR 188

Query: 192 ASEACDWGVVDKVL 205
             +A + G     L
Sbjct: 189 GKKAVELGFAADTL 202


>gi|238762757|ref|ZP_04623726.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
           kristensenii ATCC 33638]
 gi|238699062|gb|EEP91810.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
           kristensenii ATCC 33638]
          Length = 647

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/148 (33%), Positives = 79/148 (53%), Gaps = 12/148 (8%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I+L I+SPGG V  G+AIY+ +       + +  G AASM S++   G       +P NA
Sbjct: 40  INLRIHSPGGDVFEGIAIYNLLNSHPASKTVYIDGLAASMASVIAMVGNP---VIMPENA 96

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H+P G   G A+D+  +A  + K++  L   Y K  GKT EE+   L  +  ++A 
Sbjct: 97  MMMIHKPWGITGGDANDMRDYADLLDKVEGVLIPSYAKKTGKTPEELAVMLGEETWLTAQ 156

Query: 194 EACDWGVVDKVL-----MSRID---IEE 213
           E  + G  D++L     M+RI+   IEE
Sbjct: 157 ECVEHGFADQLLPSMQAMARINSKRIEE 184


>gi|15895167|ref|NP_348516.1| ClpP family serine protease [Clostridium acetobutylicum ATCC 824]
 gi|15024872|gb|AAK79856.1|AE007697_9 ClpP family serine protease, possible phage related [Clostridium
           acetobutylicum ATCC 824]
 gi|325509306|gb|ADZ20942.1| ClpP family serine protease, possible phage relted protein
           [Clostridium acetobutylicum EA 2018]
          Length = 256

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 86/170 (50%), Gaps = 8/170 (4%)

Query: 41  KERIVFVTGQIE----DHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           K+  VF+ G+I     D   T   +    L+A      I+L++NSPGG V  G+ I + +
Sbjct: 25  KQADVFIYGEITSYQWDDTDTTAASFKKDLDALGNLNTINLHLNSPGGSVFEGVTICNML 84

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQ 156
           +     ++ +    AAS+ S++  AG+    F   NA +++H PS    G +SD+ + A 
Sbjct: 85  KQNSATVNVYVDALAASIASVIAMAGDT--IFMPKNAMLMVHNPSSVVWGNSSDMRKTAD 142

Query: 157 DIVKIKRRLNEIYVKNCGKTYEE--VEKTLDRDHIMSASEACDWGVVDKV 204
           D+ KI   + + Y+   G   ++  +++ +D +  +SA E   +G+ D V
Sbjct: 143 DLDKIGLSMQQSYLAKAGDKLDQSTLQQLMDNETWLSADECFSYGLCDVV 192


>gi|111021596|ref|YP_704568.1| ATP-dependent Clp protease [Rhodococcus jostii RHA1]
 gi|110821126|gb|ABG96410.1| possible ATP-dependent Clp protease [Rhodococcus jostii RHA1]
          Length = 219

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 86/175 (49%), Gaps = 5/175 (2%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +  RL  +RIV +TG++ D  AT   A  L L   +   E+ L+++     V A   + D
Sbjct: 44  LAERLFDKRIVSLTGRL-DSEATNRAAASLALLDASGDGEVQLWLHGVDADVDAAATLLD 102

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           T+  +  P+   C G    M    L+  ++  R A  +A   L +P    +G ASD+   
Sbjct: 103 TLDLMGVPLHVHCRGDVRGMAVAFLAPADR--RTAASHATFHLREPQTSCTGPASDVAIA 160

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH-IMSASEACDWGVVDKVLMSR 208
           A+   +  RRL +    +CG+  + V   + RDH I++A EA D+G++D V  +R
Sbjct: 161 AEHHEQQLRRLQQRIADSCGRPVDAVSGDM-RDHRILTADEARDYGLIDAVTGAR 214


>gi|304560655|gb|ADM43318.1| putative Clp protease [Edwardsiella tarda FL6-60]
          Length = 671

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 74/134 (55%), Gaps = 4/134 (2%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP- 131
             I+L+I+SPGG V  G+AIY+ ++      + +  G AASM S++   G+      +P 
Sbjct: 57  NHINLHIHSPGGDVFDGIAIYNLLKNHPASKTVYIDGLAASMASVIAMVGDP---IIMPE 113

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           NA +++H+P G   G A+++  +A  + K++  L   Y +  GKT +E+   L+++  +S
Sbjct: 114 NAMMMIHKPWGVAGGDANEMRDYADLLDKVESVLIPAYAEKTGKTADEIAALLEQETWLS 173

Query: 192 ASEACDWGVVDKVL 205
             E  + G  DK +
Sbjct: 174 GVECVEQGFADKTI 187


>gi|254884002|ref|ZP_05256712.1| clp protease [Bacteroides sp. 4_3_47FAA]
 gi|260173155|ref|ZP_05759567.1| peptidase S14, ClpP [Bacteroides sp. D2]
 gi|294778504|ref|ZP_06743927.1| Clp protease [Bacteroides vulgatus PC510]
 gi|319640506|ref|ZP_07995227.1| hypothetical protein HMPREF9011_00824 [Bacteroides sp. 3_1_40A]
 gi|254836795|gb|EET17104.1| clp protease [Bacteroides sp. 4_3_47FAA]
 gi|294447766|gb|EFG16343.1| Clp protease [Bacteroides vulgatus PC510]
 gi|317387884|gb|EFV68742.1| hypothetical protein HMPREF9011_00824 [Bacteroides sp. 3_1_40A]
          Length = 345

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 87/160 (54%), Gaps = 9/160 (5%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM 108
           G+ +D++ +   A+ L LEAE    ++ + INS GG V +G+AI++ ++  K  I+ +  
Sbjct: 23  GEYDDNVRSGDIAREL-LEAEALTGKVDVRINSNGGEVYSGIAIFNALKNSKADITIYVD 81

Query: 109 GQAASMGSLLLSAGE--KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLN 166
           G AASM S++   G+  +  R+    AR++LH   GG  G   +++   ++I  ++  L 
Sbjct: 82  GIAASMASVIALCGKPVQMSRY----ARLMLHSVQGGCYGNKDEMKDCIREIEALEDTLC 137

Query: 167 EIYVKNCGKTYEEVEKTL--DRDHIMSASEACDWGVVDKV 204
           E+Y    GK  EE+       +DH + A EA   G++D +
Sbjct: 138 EMYATRMGKDKEEIRAMYFDGKDHWLRADEALALGLIDGI 177


>gi|310778837|ref|YP_003967170.1| peptidase S14 ClpP [Ilyobacter polytropus DSM 2926]
 gi|309748160|gb|ADO82822.1| peptidase S14 ClpP [Ilyobacter polytropus DSM 2926]
          Length = 360

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 76/137 (55%), Gaps = 12/137 (8%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQ-FIKP---PISTFCMGQAASMGSLLLSAGEK---GMR 127
           I+L INSPGG VT   AIY+ ++ + K     I+T+  G AAS  S +  AG++   G+ 
Sbjct: 55  INLCINSPGGSVTEAHAIYNMLKRYAKANNVKITTYIDGVAASAASYIAMAGDEICMGL- 113

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
                A +++H  +GG  G++ D+ + A  + K+K  + +IYV     + E +   ++ +
Sbjct: 114 ----GASLMIHNVNGGAWGESKDLRKTADLMDKLKENIIDIYVTQSNLSREVISNLMNEE 169

Query: 188 HIMSASEACDWGVVDKV 204
             M+  EA ++G +DK+
Sbjct: 170 TWMTPEEALEYGFIDKI 186


>gi|167465665|ref|ZP_02330754.1| serine protease (phage related-protein, ClpP family) [Paenibacillus
           larvae subsp. larvae BRL-230010]
          Length = 238

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 76/133 (57%), Gaps = 6/133 (4%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I+LYINSPGG V  G+AI++ ++  K  +       AAS+ S++  AG+      +P N+
Sbjct: 45  INLYINSPGGSVFEGIAIHNMLKRHKANVHVHVDALAASIASVIAMAGDT---IYMPKNS 101

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK--TYEEVEKTLDRDHIMS 191
            +++H P     G AS++ + A D+ +I     ++Y++  G   + E+++  LD +  +S
Sbjct: 102 MLMIHNPWIFAWGNASEMRKIADDLDRIGNSSKQVYLQKAGDKLSDEKLQDMLDAETWLS 161

Query: 192 ASEACDWGVVDKV 204
           A EA ++G+ D V
Sbjct: 162 ADEAFEYGLCDVV 174


>gi|265750850|ref|ZP_06086913.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|315921429|ref|ZP_07917669.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|263237746|gb|EEZ23196.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|313695304|gb|EFS32139.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 339

 Score = 67.8 bits (164), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 87/160 (54%), Gaps = 9/160 (5%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM 108
           G+ +D++ +   A+ L LEAE    ++ + INS GG V +G+AI++ ++  K  I+ +  
Sbjct: 17  GEYDDNVRSGDIAREL-LEAEALTGKVDVRINSNGGEVYSGIAIFNALKNSKADITIYVD 75

Query: 109 GQAASMGSLLLSAGE--KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLN 166
           G AASM S++   G+  +  R+    AR++LH   GG  G   +++   ++I  ++  L 
Sbjct: 76  GIAASMASVIALCGKPVQMSRY----ARLMLHSVQGGCYGNKDEMKDCIREIEALEDTLC 131

Query: 167 EIYVKNCGKTYEEVEKTL--DRDHIMSASEACDWGVVDKV 204
           E+Y    GK  EE+       +DH + A EA   G++D +
Sbjct: 132 EMYATRMGKDKEEIRAMYFDGKDHWLRADEALALGLIDGI 171


>gi|240950423|ref|ZP_04754674.1| putative Clp-like protease [Actinobacillus minor NM305]
 gi|240295043|gb|EER45899.1| putative Clp-like protease [Actinobacillus minor NM305]
          Length = 676

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 75/136 (55%), Gaps = 4/136 (2%)

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           N  K+I+L+I+SPGG V  G+AIY+ ++      + +  G AASM S++  AG +     
Sbjct: 63  NNLKQINLHIHSPGGDVFDGIAIYNLLKNHPANKTVYIDGLAASMASVIAMAGNE---II 119

Query: 130 LP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +P NA +++H+P G   G A D+ ++A  + K++  L   Y    GK+  ++ + L  + 
Sbjct: 120 MPENAMMMIHKPWGIQGGDADDMRKYADLLDKVESTLITAYTAKTGKSETDLAEMLKVET 179

Query: 189 IMSASEACDWGVVDKV 204
            ++  E  + G  DK+
Sbjct: 180 WLTGKECIEQGFADKL 195


>gi|228915237|ref|ZP_04078832.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228950451|ref|ZP_04112611.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228809266|gb|EEM55727.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228844468|gb|EEM89524.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 197

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 73/127 (57%), Gaps = 6/127 (4%)

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +  +++Y+NS GG V AG+AIY+ ++  K   + +  G AAS+ S++  AG+   R  +P
Sbjct: 15  KSNLNIYVNSGGGSVFAGLAIYNMLKRNKAQKTVYVDGVAASIASVIALAGD---RVVIP 71

Query: 132 -NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC--GKTYEEVEKTLDRDH 188
            NA +++H+P     G A D  + A+D+  I+  +  +Y +N   G   EE+++ +D + 
Sbjct: 72  SNAFLMIHKPWTYAVGNAIDFRKAAEDLDNIESGIMNVYKENLKEGIEIEEIQQLVDAET 131

Query: 189 IMSASEA 195
            +S  EA
Sbjct: 132 WLSGEEA 138


>gi|217069988|gb|ACJ83354.1| unknown [Medicago truncatula]
          Length = 216

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 78/134 (58%), Gaps = 13/134 (9%)

Query: 17  GLVPMVVEQTNRG----ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
           G+V MV+   +RG    +   D+ S L K RIV++   +   +  L+ A+ L+L+ ++  
Sbjct: 84  GVVTMVIP-FSRGTAWEQPPPDLASYLYKNRIVYLGMSLVPSVTELMVAEFLYLQYDDET 142

Query: 73  KEISLYINSPG--------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           K I +YINS G        G  T  +A+YD M++IKPPI T C+G A    +LLL+AG K
Sbjct: 143 KPIYMYINSTGTTKGGEKLGYETEALAVYDLMRYIKPPIFTLCVGNAWGEAALLLAAGAK 202

Query: 125 GMRFALPNARILLH 138
           G R ALP++ I++ 
Sbjct: 203 GNRSALPSSTIMIR 216


>gi|330433345|gb|AEC18404.1| ATP-dependent Clp protease proteolytic subunit [Gallibacterium
           anatis UMN179]
          Length = 654

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 76/133 (57%), Gaps = 4/133 (3%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP- 131
           ++I+L+I+SPGG V  G+AIY+ ++      + +  G AASM S++  AG++     +P 
Sbjct: 44  RQINLHIHSPGGDVFDGIAIYNLLKNHPANKTVYIDGLAASMASVIAMAGDE---VIMPE 100

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           NA +++H+P G   G A ++ ++A  + K++  L   Y+   GK+ +E+   L  +  ++
Sbjct: 101 NAMLMIHKPWGIQGGDAEELRKYADLLDKVESTLLMAYIAKTGKSEDELAAMLAVETWLT 160

Query: 192 ASEACDWGVVDKV 204
             E  + G  DK+
Sbjct: 161 GKECVELGFADKL 173


>gi|228926947|ref|ZP_04090013.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228832682|gb|EEM78253.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
          Length = 197

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 73/127 (57%), Gaps = 6/127 (4%)

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +  +++Y+NS GG V AG+AIY+ ++  K   + +  G AAS+ S++  AG+   R  +P
Sbjct: 15  KSNLNIYVNSGGGSVFAGLAIYNMLKRNKAQKTVYVDGVAASIASVIALAGD---RVVVP 71

Query: 132 -NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC--GKTYEEVEKTLDRDH 188
            NA +++H+P     G A D  + A+D+  I+  +  +Y +N   G   EE+++ +D + 
Sbjct: 72  SNAFLMIHKPWTYAVGNAIDFRKAAEDLDNIESGIMNVYKENLKEGIEIEEIQQLVDAET 131

Query: 189 IMSASEA 195
            +S  EA
Sbjct: 132 WLSGEEA 138


>gi|169842312|ref|ZP_02875417.1| Protease subunit of ATP-dependent Clp protease [candidate division
           TM7 single-cell isolate TM7a]
          Length = 55

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 83  GGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           GGV+TAG+AIYDTM+ IK  +ST C+GQAASMG++LL+AG KG
Sbjct: 1   GGVITAGLAIYDTMRHIKSDVSTVCVGQAASMGAVLLAAGAKG 43


>gi|298385899|ref|ZP_06995456.1| protease [Bacteroides sp. 1_1_14]
 gi|298261127|gb|EFI03994.1| protease [Bacteroides sp. 1_1_14]
          Length = 339

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 77/144 (53%), Gaps = 8/144 (5%)

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE- 123
            LEAE    ++ + INS GG V +G+AI++ ++  K  I+ +  G AASM S++   G+ 
Sbjct: 32  LLEAEALTGKVDVRINSNGGEVYSGIAIFNALKNSKADITIYVDGIAASMASVIALCGKP 91

Query: 124 -KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
            +  R+    AR++LH   GG  G   +++   ++I  ++  L E+Y    GK  EE+  
Sbjct: 92  VQMSRY----ARLMLHSVQGGCYGNKDEMKDCIREIEALEDTLCEMYATRMGKDKEEIRA 147

Query: 183 TL--DRDHIMSASEACDWGVVDKV 204
                +DH + A EA   G++D +
Sbjct: 148 MYFDGKDHWLRADEALALGLIDGI 171


>gi|84391274|ref|ZP_00991605.1| ATP-dependent protease [Vibrio splendidus 12B01]
 gi|84376563|gb|EAP93441.1| ATP-dependent protease [Vibrio splendidus 12B01]
          Length = 670

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 82/164 (50%), Gaps = 10/164 (6%)

Query: 45  VFVTGQIE--DHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           V+V G I   D  AT I A L         KE+ L + S GG V  G+A+Y+ ++  K  
Sbjct: 20  VWVHGDISAWDIDATEIIAALQVANG----KEVELRMLSGGGSVYQGLAMYNALKAHKGK 75

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALP-NARILLHQPSGGFSGQASDIERHAQDIVKI 161
           +     G AAS+ + +L A +      +P NA +++H P+ G  G   +I    Q +   
Sbjct: 76  VVGIVDGMAASIATYVLLACDS---IRMPENAMLMIHNPAIGAWGGEKEINSALQQLQAA 132

Query: 162 KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            + ++E Y +  G+  EEV   ++ +   +A  A DWG+VD+V+
Sbjct: 133 TKTISEAYAEKSGQPLEEVLTAMESETWFTAQAAKDWGLVDEVV 176


>gi|311279176|ref|YP_003941407.1| peptidase S14 ClpP [Enterobacter cloacae SCF1]
 gi|308748371|gb|ADO48123.1| peptidase S14 ClpP [Enterobacter cloacae SCF1]
          Length = 669

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 70/135 (51%), Gaps = 4/135 (2%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
            I+L+INSPGG V  G+AI++ ++     I+    G AASM S++   G       +P N
Sbjct: 62  HINLHINSPGGDVFDGIAIFNALKHHGAAITVHIDGLAASMASVIAMVGNP---VIMPEN 118

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
             +++H+P G   G A+D+  +A  + K++  L   Y    GK+ E++   L+ +  M  
Sbjct: 119 TMMMIHKPWGFAGGDANDMRDYADLLDKVESVLIPAYADKTGKSTEDIAAMLEDETWMDG 178

Query: 193 SEACDWGVVDKVLMS 207
           +E    G  D+V  S
Sbjct: 179 AECLALGFADQVTPS 193


>gi|169257188|ref|YP_001700566.1| putative Clp protease [Salmonella phage Fels-1]
          Length = 706

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 74/133 (55%), Gaps = 4/133 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
           +I+L+I+SPGG +  G+AIY+ ++        +  G A SM S++   G+      +P N
Sbjct: 71  QINLHIHSPGGSIFDGLAIYNLLKNHPARKVVYVDGVACSMASVIAMVGDP---VIMPEN 127

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A +++H+P G   G++SDI  +A  + K++  +  IY +  GK+ +++   L  +  MS 
Sbjct: 128 AMMMIHRPRGIAGGESSDIRDYADLLDKMESVIIPIYAEKTGKSPDDIAALLASETWMSG 187

Query: 193 SEACDWGVVDKVL 205
           +E    G  DKV+
Sbjct: 188 AECVREGFADKVI 200


>gi|310779736|ref|YP_003968068.1| peptidase S14 ClpP [Ilyobacter polytropus DSM 2926]
 gi|309749059|gb|ADO83720.1| peptidase S14 ClpP [Ilyobacter polytropus DSM 2926]
          Length = 361

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 78/154 (50%), Gaps = 8/154 (5%)

Query: 53  DHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAA 112
           D  A   C +L  +EAE    EI + INSPGG V    AIY++++     +       AA
Sbjct: 35  DVSANSFCRELEKIEAE----EILVRINSPGGDVFEAQAIYNSLKNHPAKVIVRIDALAA 90

Query: 113 SMGSLLLSAGEKGMRFALP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVK 171
           S  +++  AG++ +   +P NA  ++H P    SG+A D  + A+ +  I+  +  +Y  
Sbjct: 91  SAATVIAMAGDEIL---MPENAIFMIHNPWSWSSGEAKDFRKKAETMDTIRETIVNVYAS 147

Query: 172 NCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
               + EE+   +D +  +++ EA D G + ++L
Sbjct: 148 KSTLSREEIMNKMDEESWLTSQEAFDAGFITEIL 181


>gi|168236516|ref|ZP_02661574.1| Clp protease domain protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194737695|ref|YP_002113659.1| ATP-dependent protease [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194713197|gb|ACF92418.1| ATP-dependent protease [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197290311|gb|EDY29667.1| Clp protease domain protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
          Length = 689

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 74/133 (55%), Gaps = 4/133 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
           +I+L+I+SPGG +  G+AIY+ ++        +  G A SM S++   G+      +P N
Sbjct: 56  QINLHIHSPGGSIFDGLAIYNLLKNHPARKVVYVDGVACSMASVIAMVGDP---VIMPEN 112

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A +++H+P G   G++SDI  +A  + K++  +  IY +  GK+ +++   L  +  MS 
Sbjct: 113 AMMMIHRPRGIAGGESSDIRDYADLLDKMESVIIPIYAEKTGKSPDDIAALLASETWMSG 172

Query: 193 SEACDWGVVDKVL 205
           +E    G  DKV+
Sbjct: 173 AECVREGFADKVI 185


>gi|16764274|ref|NP_459889.1| ATP-dependent protease [Salmonella phage Fels-1]
 gi|16419422|gb|AAL19848.1| Fels-1 prophage protease subunits of ATP-dependent proteases
           [Salmonella phage Fels-1]
          Length = 728

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 74/133 (55%), Gaps = 4/133 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
           +I+L+I+SPGG +  G+AIY+ ++        +  G A SM S++   G+      +P N
Sbjct: 93  QINLHIHSPGGSIFDGLAIYNLLKNHPARKVVYVDGVACSMASVIAMVGDP---VIMPEN 149

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A +++H+P G   G++SDI  +A  + K++  +  IY +  GK+ +++   L  +  MS 
Sbjct: 150 AMMMIHRPRGIAGGESSDIRDYADLLDKMESVIIPIYAEKTGKSPDDIAALLASETWMSG 209

Query: 193 SEACDWGVVDKVL 205
           +E    G  DKV+
Sbjct: 210 AECVREGFADKVI 222


>gi|167549367|ref|ZP_02343126.1| Clp protease domain protein [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|204929808|ref|ZP_03220829.1| Clp protease domain protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204320802|gb|EDZ06003.1| Clp protease domain protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205325423|gb|EDZ13262.1| Clp protease domain protein [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 689

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 74/133 (55%), Gaps = 4/133 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
           +I+L+I+SPGG +  G+AIY+ ++        +  G A SM S++   G+      +P N
Sbjct: 56  QINLHIHSPGGSIFDGLAIYNLLKNHPARKVVYVDGVACSMASVIAMVGDP---VIMPEN 112

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A +++H+P G   G++SDI  +A  + K++  +  IY +  GK+ +++   L  +  MS 
Sbjct: 113 AMMMIHRPRGIAGGESSDIRDYADLLDKMESVIIPIYAEKTGKSPDDIAALLASETWMSG 172

Query: 193 SEACDWGVVDKVL 205
           +E    G  DKV+
Sbjct: 173 AECVREGFADKVI 185


>gi|229017470|ref|ZP_04174371.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           AH1273]
 gi|229023686|ref|ZP_04180178.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           AH1272]
 gi|228737611|gb|EEL88115.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           AH1272]
 gi|228743794|gb|EEL93895.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           AH1273]
          Length = 197

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 73/127 (57%), Gaps = 6/127 (4%)

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +  +++Y+NS GG V AG+AIY+ ++  K   + +  G AAS+ S++  AG+   R  +P
Sbjct: 15  KSNLNIYVNSGGGSVFAGLAIYNMLKRNKAQKTVYVDGVAASIASVIALAGD---RVVVP 71

Query: 132 -NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC--GKTYEEVEKTLDRDH 188
            NA +++H+P     G + D  + A+D+  I+  +  +Y +N   G   EE+++ +D + 
Sbjct: 72  SNAFLMIHKPWTYADGNSIDFRKAAEDLDNIESGIMNVYKENLKEGIEIEEIQQLVDAET 131

Query: 189 IMSASEA 195
            +S  EA
Sbjct: 132 WLSGEEA 138


>gi|228987450|ref|ZP_04147569.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228772182|gb|EEM20629.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 240

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 75/133 (56%), Gaps = 4/133 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I+LYINSPGG V   MAI   +Q  +  + ++  G  AS  S+L    +K + +A  N+ 
Sbjct: 48  INLYINSPGGSVFETMAIIAMLQRHQAKVISYIDGIGASCASVLPMISDKIIMYA--NSM 105

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE--VEKTLDRDHIMSA 192
           +++H      SG A+ + + A DI +I + + + Y+   G   +E  +++ LD +  +SA
Sbjct: 106 MMIHNAWTYASGNANQLRKAADDIERINQSMVQHYLTRAGDKLDEDTLKQLLDAETWLSA 165

Query: 193 SEACDWGVVDKVL 205
            EA ++G+ D+++
Sbjct: 166 EEAMNYGLCDEII 178


>gi|217959640|ref|YP_002338192.1| prophage LambdaBa02, Clp protease family protein [Bacillus cereus
           AH187]
 gi|217067295|gb|ACJ81545.1| prophage LambdaBa02, Clp protease family protein [Bacillus cereus
           AH187]
          Length = 251

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 75/133 (56%), Gaps = 4/133 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I+LYINSPGG V   MAI   +Q  +  + ++  G  AS  S+L    +K + +A  N+ 
Sbjct: 59  INLYINSPGGSVFETMAIIAMLQRHQAKVISYIDGIGASCASVLPMISDKIIMYA--NSM 116

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE--VEKTLDRDHIMSA 192
           +++H      SG A+ + + A DI +I + + + Y+   G   +E  +++ LD +  +SA
Sbjct: 117 MMIHNAWTYASGNANQLRKAADDIERINQSMVQHYLTRAGDKLDEDTLKQLLDAETWLSA 176

Query: 193 SEACDWGVVDKVL 205
            EA ++G+ D+++
Sbjct: 177 EEAMNYGLCDEII 189


>gi|206975220|ref|ZP_03236134.1| prophage LambdaBa02, Clp protease family protein [Bacillus cereus
           H3081.97]
 gi|206746641|gb|EDZ58034.1| prophage LambdaBa02, Clp protease family protein [Bacillus cereus
           H3081.97]
          Length = 251

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 75/133 (56%), Gaps = 4/133 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I+LYINSPGG V   MAI   +Q  +  + ++  G  AS  S+L    +K + +A  N+ 
Sbjct: 59  INLYINSPGGSVFETMAIIAMLQRHQAKVISYIDGIGASCASVLPMISDKIIMYA--NSM 116

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE--VEKTLDRDHIMSA 192
           +++H      SG A+ + + A DI +I + + + Y+   G   +E  +++ LD +  +SA
Sbjct: 117 MMIHNAWTYASGNANQLRKAADDIERINQSMVQHYLTRAGDKLDEDTLKQLLDAETWLSA 176

Query: 193 SEACDWGVVDKVL 205
            EA ++G+ D+++
Sbjct: 177 EEAMNYGLCDEII 189


>gi|328910857|gb|AEB62453.1| ATP-dependent Clp protease proteolytic subunit Endopeptidase Clp
           [Bacillus amyloliquefaciens LL3]
          Length = 240

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 74/132 (56%), Gaps = 4/132 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           ++++INSPGG V  G+AI   ++  K  ++ +  G AAS+ S++  AG+    F   NA 
Sbjct: 59  LNVHINSPGGSVFEGVAICSMLKQHKAFVNVYIDGLAASIASVIAMAGDA--IFMPSNAM 116

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK--TYEEVEKTLDRDHIMSA 192
           +++H P     G A+++ + A  + KI   +   Y++  G   T E ++  +D +  +SA
Sbjct: 117 MMVHNPWTIAMGNANEMRKQADVLDKISESMKASYLEKAGDKLTKETLDSLMDNETWLSA 176

Query: 193 SEACDWGVVDKV 204
           SEA  +G+ D++
Sbjct: 177 SEAVSYGLADEI 188


>gi|308172739|ref|YP_003919444.1| ATP-dependent Clp protease proteolytic subunit Endopeptidase Clp
           [Bacillus amyloliquefaciens DSM 7]
 gi|307605603|emb|CBI41974.1| ATP-dependent Clp protease proteolytic subunit Endopeptidase Clp
           [Bacillus amyloliquefaciens DSM 7]
          Length = 240

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 74/132 (56%), Gaps = 4/132 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           ++++INSPGG V  G+AI   ++  K  ++ +  G AAS+ S++  AG+    F   NA 
Sbjct: 59  LNVHINSPGGSVFEGVAICSMLKQHKAFVNVYIDGLAASIASVIAMAGDA--IFMPSNAM 116

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK--TYEEVEKTLDRDHIMSA 192
           +++H P     G A+++ + A  + KI   +   Y++  G   T E ++  +D +  +SA
Sbjct: 117 MMVHNPWTIAMGNANEMRKQADVLDKISESMKASYLEKAGDKLTKETLDSLMDNETWLSA 176

Query: 193 SEACDWGVVDKV 204
           SEA  +G+ D++
Sbjct: 177 SEAVSYGLADEI 188


>gi|125974224|ref|YP_001038134.1| peptidase S14, ClpP [Clostridium thermocellum ATCC 27405]
 gi|125714449|gb|ABN52941.1| peptidase S14, ClpP [Clostridium thermocellum ATCC 27405]
          Length = 247

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 73/137 (53%), Gaps = 4/137 (2%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K+I+++INS GG V A   IY  ++  K  +     G A S  S++  AG++ +    P 
Sbjct: 55  KDINVWINSYGGDVYAASRIYTGLKEHKGKVKVKIDGVAISAASVIAMAGDEIL--MSPT 112

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIV-KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           + I+LH P G F G+A D+ RH  D++ ++K  +   Y    GK+  ++ + +D +  MS
Sbjct: 113 SIIMLHNPWGTFQGEAKDL-RHGADVLDEVKETIINAYQLKTGKSRAKISQMMDEETWMS 171

Query: 192 ASEACDWGVVDKVLMSR 208
           A +A   G  D +L  +
Sbjct: 172 AKKAVAEGFADGMLYEK 188


>gi|34762173|ref|ZP_00143180.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|27888134|gb|EAA25193.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
          Length = 344

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 76/145 (52%), Gaps = 7/145 (4%)

Query: 59  ICAQLLFLEAENPQKEI---SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMG 115
           + A  ++ E EN   +I   +LYINSPGG VT G AIY  ++  K   + +  GQ +S+ 
Sbjct: 32  VSADQVYKELENFGNDIDTINLYINSPGGSVTEGCAIYSALKRHKAVKNVYIDGQCSSIA 91

Query: 116 SLLLSAGEKGMRFAL-PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCG 174
           S++  AG+K    A+ P A +++H P    +G A ++ + A  +  +K  +   YV    
Sbjct: 92  SVIAMAGDK---IAMSPVATMMIHNPITALAGDAIELRKTAAILDIMKETIINAYVTKSH 148

Query: 175 KTYEEVEKTLDRDHIMSASEACDWG 199
            + EE+   +D +   +A +A + G
Sbjct: 149 LSREEISALMDTETYFTADQAIEKG 173


>gi|254242214|ref|ZP_04935536.1| hypothetical protein PA2G_02948 [Pseudomonas aeruginosa 2192]
 gi|126195592|gb|EAZ59655.1| hypothetical protein PA2G_02948 [Pseudomonas aeruginosa 2192]
          Length = 696

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 73/131 (55%), Gaps = 4/131 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           ISL ++SPGG V  G AIY+ ++     +  +  G AASM +++L + +      +P NA
Sbjct: 74  ISLRVHSPGGDVFEGTAIYNLLKHHPARVEGYVDGLAASMATVVLMSCDV---IHIPENA 130

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H+P G   G+A D+ R+A  + KI+  +   Y+   GK+ E+++  L  +  M   
Sbjct: 131 MMMVHRPWGIQGGEADDMRRYADLLEKIEGTMVAAYMAKTGKSEEDIKALLKAETWMDGR 190

Query: 194 EACDWGVVDKV 204
           EA + G  D++
Sbjct: 191 EAVEAGFADQL 201


>gi|148245175|ref|YP_001219868.1| ClpP-like phage protease [Clostridium kluyveri DSM 555]
 gi|219684075|ref|YP_002470457.1| hypothetical protein CKR_P47 [Clostridium kluyveri NBRC 12016]
 gi|146337055|gb|ABQ23666.1| predicted ClpP-like phage protease [Clostridium kluyveri DSM 555]
 gi|219570583|dbj|BAH08566.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 255

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 71/133 (53%), Gaps = 6/133 (4%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I+L+INSPGG V  G+AI + ++  K  ++ +    AAS+ S++  +G       +P N+
Sbjct: 56  INLHINSPGGNVFEGVAIGNMLKQHKAQVNVYVDALAASIASIIAMSGN---TILMPKNS 112

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE--VEKTLDRDHIMS 191
            +++H P     G A D  + A D+ KI   +   Y+   G   ++  ++K +D D  +S
Sbjct: 113 MMMIHNPLSIAWGNAKDFRKKADDLDKIGLSMQTTYLNKAGDKLDQDTLQKLMDNDTWLS 172

Query: 192 ASEACDWGVVDKV 204
           A +A  +G+ D V
Sbjct: 173 ADDAYSYGLCDVV 185


>gi|52079942|ref|YP_078733.1| ATP-dependent Clp protease proteolytic subunit (class III
           heat-shock protein) [Bacillus licheniformis ATCC 14580]
 gi|52785314|ref|YP_091143.1| hypothetical protein BLi01550 [Bacillus licheniformis ATCC 14580]
 gi|52003153|gb|AAU23095.1| ATP-dependent Clp protease proteolytic subunit (class III
           heat-shock protein) [Bacillus licheniformis ATCC 14580]
 gi|52347816|gb|AAU40450.1| putative protein [Bacillus licheniformis ATCC 14580]
          Length = 248

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 67/124 (54%), Gaps = 9/124 (7%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           +++YINSPGG V  G +IY+ ++  K  ++ +  G AAS+ S++  +G+    F   NA 
Sbjct: 56  LNIYINSPGGSVFEGNSIYNIIKRHKAHVNVYVDGLAASIASVIAMSGD--AIFMPANAM 113

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           +++H P     G A ++ + A D+ +I+  L E Y+   G       + L+RD ++   +
Sbjct: 114 MMIHNPWTVAQGNAEELRKQADDMDRIRESLIEAYLGKAG-------EKLNRDRLIELMD 166

Query: 195 ACDW 198
           A  W
Sbjct: 167 AETW 170


>gi|294783245|ref|ZP_06748569.1| ATP-dependent Clp protease [Fusobacterium sp. 1_1_41FAA]
 gi|294480123|gb|EFG27900.1| ATP-dependent Clp protease [Fusobacterium sp. 1_1_41FAA]
          Length = 344

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 76/145 (52%), Gaps = 7/145 (4%)

Query: 59  ICAQLLFLEAENPQKEI---SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMG 115
           + A  ++ E EN   +I   +LYINSPGG VT G AIY  ++  K   + +  GQ +S+ 
Sbjct: 32  VSADQVYKELENFGNDIDTINLYINSPGGSVTEGCAIYSALKRHKAVKNVYIDGQCSSIA 91

Query: 116 SLLLSAGEKGMRFAL-PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCG 174
           S++  AG+K    A+ P A +++H P    +G A ++ + A  +  +K  +   YV    
Sbjct: 92  SVIAMAGDK---IAMSPVATMMIHNPITALAGDAIELRKTAAILDIMKDTIINAYVTKSH 148

Query: 175 KTYEEVEKTLDRDHIMSASEACDWG 199
            + EE+   +D +   +A +A + G
Sbjct: 149 LSREEISALMDTETYFTADQAIEKG 173


>gi|65321281|ref|ZP_00394240.1| COG0740: Protease subunit of ATP-dependent Clp proteases [Bacillus
           anthracis str. A2012]
 gi|167633728|ref|ZP_02392052.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. A0442]
 gi|170688767|ref|ZP_02879971.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. A0465]
 gi|170705747|ref|ZP_02896210.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. A0389]
 gi|177654334|ref|ZP_02936263.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. A0174]
 gi|190566076|ref|ZP_03018995.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis Tsiankovskii-I]
 gi|227813139|ref|YP_002813148.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. CDC 684]
 gi|229601615|ref|YP_002868186.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. A0248]
 gi|167531134|gb|EDR93821.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. A0442]
 gi|170129287|gb|EDS98151.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. A0389]
 gi|170667283|gb|EDT18042.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. A0465]
 gi|172080824|gb|EDT65905.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. A0174]
 gi|190562995|gb|EDV16961.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis Tsiankovskii-I]
 gi|227002833|gb|ACP12576.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. CDC 684]
 gi|229266023|gb|ACQ47660.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. A0248]
          Length = 240

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 73/135 (54%), Gaps = 4/135 (2%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K I+LYINSPGG V   MAI   +Q     I ++  G  AS  S+L    +K + +A  N
Sbjct: 46  KTINLYINSPGGSVFETMAIIAMLQRHHAKIISYIDGIGASCASVLPMISDKIIMYA--N 103

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE--VEKTLDRDHIM 190
           + +++H      SG A  + + A DI +I + + + Y+   G   +E  +++ LD +  +
Sbjct: 104 SMMMIHNAWTYASGNADQLRKAADDIERINQSMVQHYLTRAGDKLDEDTLKQLLDAETWL 163

Query: 191 SASEACDWGVVDKVL 205
           SA EA  +G+ D+++
Sbjct: 164 SAEEAMGYGLCDEII 178


>gi|30263954|ref|NP_846331.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. Ames]
 gi|47778244|ref|YP_020737.2| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49186802|ref|YP_030054.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. Sterne]
 gi|165872161|ref|ZP_02216800.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. A0488]
 gi|167640964|ref|ZP_02399221.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. A0193]
 gi|254683648|ref|ZP_05147508.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. CNEVA-9066]
 gi|254735992|ref|ZP_05193698.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. Western North America USA6153]
 gi|254743884|ref|ZP_05201567.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. Kruger B]
 gi|254754338|ref|ZP_05206373.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. Vollum]
 gi|254757970|ref|ZP_05209997.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. Australia 94]
 gi|30258598|gb|AAP27817.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. Ames]
 gi|47551949|gb|AAT33212.2| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49180729|gb|AAT56105.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. Sterne]
 gi|164712108|gb|EDR17646.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. A0488]
 gi|167511014|gb|EDR86403.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. A0193]
          Length = 251

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 73/135 (54%), Gaps = 4/135 (2%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K I+LYINSPGG V   MAI   +Q     I ++  G  AS  S+L    +K + +A  N
Sbjct: 57  KTINLYINSPGGSVFETMAIIAMLQRHHAKIISYIDGIGASCASVLPMISDKIIMYA--N 114

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE--VEKTLDRDHIM 190
           + +++H      SG A  + + A DI +I + + + Y+   G   +E  +++ LD +  +
Sbjct: 115 SMMMIHNAWTYASGNADQLRKAADDIERINQSMVQHYLTRAGDKLDEDTLKQLLDAETWL 174

Query: 191 SASEACDWGVVDKVL 205
           SA EA  +G+ D+++
Sbjct: 175 SAEEAMGYGLCDEII 189


>gi|227485897|ref|ZP_03916213.1| peptidase S14, ClpP [Anaerococcus lactolyticus ATCC 51172]
 gi|227236130|gb|EEI86145.1| peptidase S14, ClpP [Anaerococcus lactolyticus ATCC 51172]
          Length = 380

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 5/156 (3%)

Query: 58  LICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSL 117
              + L +LE E+    I + INS GG V A  AIY  ++  K        G AAS  ++
Sbjct: 43  FFSSDLAYLEQEDINTLI-IRINSAGGDVFAATAIYSRLKEFKAKKIVKIDGWAASAATI 101

Query: 118 LLSAGEKGMRFALPNARILLHQPSGGFSG--QASDIERHAQDIVKIKRRLNEIYVKNCGK 175
           +  AG++ +  A PN  +++H P  G  G   A D+ ++ + +  IK+ +   Y    GK
Sbjct: 102 IAMAGDE-IEIA-PNGSLMIHDPLFGLEGYFNAKDLIKYIEQLETIKKSIINAYKTKTGK 159

Query: 176 TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           T EE+ + ++ +   +  EA D G  D+++    D+
Sbjct: 160 TEEELAQLMEAETWYTGQEAVDAGFCDRLMFEEADV 195


>gi|260889396|ref|ZP_05900659.1| putative prophage L54a, Clp protease [Leptotrichia hofstadii F0254]
 gi|260860807|gb|EEX75307.1| putative prophage L54a, Clp protease [Leptotrichia hofstadii F0254]
          Length = 260

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 72/136 (52%), Gaps = 4/136 (2%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I+LYINSPGG V + +AI +T++  K  ++    G AAS  +++ SA +      +P NA
Sbjct: 54  ITLYINSPGGSVFSAVAIANTLKNHKAKVTANIDGLAASAATIITSACD---TVRMPKNA 110

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
             ++H P     G   ++++  + + K+K  + E Y+       E + + +D +  M A 
Sbjct: 111 LFMIHNPITFAYGNNQEMQKTVEMLNKVKNSIIETYLNKAKTDKETLSELMDNETWMDAE 170

Query: 194 EACDWGVVDKVLMSRI 209
            A ++G VD+++   +
Sbjct: 171 TAKEYGFVDEIVNEEV 186


>gi|221195242|ref|ZP_03568298.1| ATP-dependent Clp protease proteolytic subunit [Atopobium rimae
           ATCC 49626]
 gi|221185145|gb|EEE17536.1| ATP-dependent Clp protease proteolytic subunit [Atopobium rimae
           ATCC 49626]
          Length = 260

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 2/136 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K + ++INS GG V  G+AIY+ ++     + T C G A S+ S++  AG +  R   P 
Sbjct: 62  KTVEVHINSYGGEVMQGVAIYNALRDCGREVVTVCDGFACSIASVIFMAGSR--RIMRPA 119

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           + ++LH P     G A D+ + A  +  I       Y+       E ++  +D +  +S 
Sbjct: 120 SLLMLHNPWVSARGNAQDLRKQADTLDTIAELSKTAYMTGTSLDRETLDAVMDAETWVSP 179

Query: 193 SEACDWGVVDKVLMSR 208
            +A +WG+  +V  S+
Sbjct: 180 EQALEWGLATEVSGSK 195


>gi|229104552|ref|ZP_04235218.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock3-28]
 gi|228678888|gb|EEL33099.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock3-28]
          Length = 239

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 75/138 (54%), Gaps = 4/138 (2%)

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           N  + I+LYINSPGG V   MAI   +Q     + ++  G  AS  S+L    +K + +A
Sbjct: 43  NGIETINLYINSPGGSVFETMAIIAMLQRHPAKVISYIDGIGASCASVLPMISDKIIMYA 102

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE--VEKTLDRD 187
             N+ +++H      SG A  + + A DI +I + + + Y+   G   +E  +++ LD +
Sbjct: 103 --NSMLMVHNAWTYASGNADQLRKAADDIERINKSMVQHYLTRAGDKLDEDILKQLLDAE 160

Query: 188 HIMSASEACDWGVVDKVL 205
             +SA EA ++G+ D+++
Sbjct: 161 TWLSADEAMEYGLCDEII 178


>gi|227878727|ref|ZP_03996639.1| S14 family endopeptidase ClpP [Lactobacillus crispatus JV-V01]
 gi|227861696|gb|EEJ69303.1| S14 family endopeptidase ClpP [Lactobacillus crispatus JV-V01]
          Length = 230

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 72/133 (54%), Gaps = 2/133 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           ++I + INS GG V AG  IY  ++  +  I    +G A S  S +  AG+  +  + P 
Sbjct: 44  QDIVVEINSRGGYVDAGSEIYTELKKYQGNIDIQIVGYACSAASWIALAGDT-VEMS-PT 101

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A++++H+ SGG  G   D+    Q + ++ + L ++Y K  GK+ +EV + + ++  M+A
Sbjct: 102 AQLMIHRASGGADGNVDDLASAMQGLDQMDQALVDLYAKRTGKSAQEVYQLMAKESWMNA 161

Query: 193 SEACDWGVVDKVL 205
             A   G VD ++
Sbjct: 162 KTAVANGFVDSIM 174


>gi|256849988|ref|ZP_05555419.1| Clp protease [Lactobacillus crispatus MV-1A-US]
 gi|262046764|ref|ZP_06019724.1| Clp protease [Lactobacillus crispatus MV-3A-US]
 gi|256713477|gb|EEU28467.1| Clp protease [Lactobacillus crispatus MV-1A-US]
 gi|260572746|gb|EEX29306.1| Clp protease [Lactobacillus crispatus MV-3A-US]
          Length = 231

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 72/133 (54%), Gaps = 2/133 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           ++I + INS GG V AG  IY  ++  +  I    +G A S  S +  AG+  +  + P 
Sbjct: 45  QDIVVEINSRGGYVDAGSEIYTELKKYQGNIDIQIVGYACSAASWIALAGDT-VEMS-PT 102

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A++++H+ SGG  G   D+    Q + ++ + L ++Y K  GK+ +EV + + ++  M+A
Sbjct: 103 AQLMIHRASGGADGNVDDLASAMQGLDQMDQALVDLYAKRTGKSAQEVYQLMAKESWMNA 162

Query: 193 SEACDWGVVDKVL 205
             A   G VD ++
Sbjct: 163 KTAVANGFVDSIM 175


>gi|228960167|ref|ZP_04121825.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228799517|gb|EEM46476.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 240

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 74/133 (55%), Gaps = 4/133 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I+LYINSPGG V   MAI   +Q  +  + ++  G  AS  S+L    +K + +A  N+ 
Sbjct: 48  INLYINSPGGSVFETMAIIAMLQRHQAKVISYIDGIGASCASVLPMISDKIIMYA--NSM 105

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE--VEKTLDRDHIMSA 192
           +++H      SG A  + + A DI +I + + + Y+   G+  +E  +++ LD +  +SA
Sbjct: 106 MMIHNAWTYASGNADQLRKAADDIERINQSMVQHYLTRAGEKLDEDTLKQLLDAETWLSA 165

Query: 193 SEACDWGVVDKVL 205
            EA  +G+ D+++
Sbjct: 166 EEAMGYGLCDEII 178


>gi|194303396|ref|YP_002014421.1| gp100 [Mycobacterium phage Porky]
 gi|194150881|gb|ACF33917.1| gp100 [Mycobacterium phage Porky]
          Length = 259

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 85/179 (47%), Gaps = 27/179 (15%)

Query: 46  FVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM-QFIKPPIS 104
           FV G + D+       QL     E+P  ++ + +NSPGG V AGM ++D +  +   P  
Sbjct: 87  FVDG-VNDYSVEACLNQLALWHREDPNCDMHIVMNSPGGSVIAGMHLFDQIAAYSTRPWD 145

Query: 105 T------------FCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIE 152
           T               G AASMG +LL + ++  R   P A +++H+ S G  G+  +IE
Sbjct: 146 TSDRPKGTHKTTMTVRGMAASMGGILLQSVDE--RIIGPEAYLMIHEISAGTGGKIGEIE 203

Query: 153 RHAQDIVKIKR----RLNEIYVKNCGK--TYEEVEKTLDR-DHIMSASEACDWGVVDKV 204
               D+V   R    R+ +++V   G   T EE +    R D  + + EA  +G VD++
Sbjct: 204 ----DMVGWYRHLCARIAKVFVHRAGGKITAEEFDAGWKRTDWWLDSDEALRYGFVDRI 258


>gi|326800870|ref|YP_004318689.1| peptidase S14 ClpP [Sphingobacterium sp. 21]
 gi|326551634|gb|ADZ80019.1| peptidase S14 ClpP [Sphingobacterium sp. 21]
          Length = 373

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 2/142 (1%)

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           F   E     I +YINSPGG V  G+ I++T++  +  I T+  G A SMG +LL + + 
Sbjct: 42  FRALEEKHDRIDIYINSPGGSVWEGLPIFNTIRSSQKEIHTYVNGIAFSMGFMLLLSAKN 101

Query: 125 GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
           G R A   +  + H  S    G A  + + A ++ K    L+ +  +  GKT E+V+   
Sbjct: 102 GRRHAFKGSIGMAHNVSTYDYGNAKQLRKSADELDKYDDVLSALIAECSGKTVEQVKSEW 161

Query: 185 --DRDHIMSASEACDWGVVDKV 204
               DH  +  E    G V+ +
Sbjct: 162 LNYEDHFFTPDEMKAEGFVNHI 183


>gi|229096954|ref|ZP_04227923.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock3-29]
 gi|228686564|gb|EEL40473.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock3-29]
          Length = 239

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 73/133 (54%), Gaps = 4/133 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I+LYINSPGG V   MAI   +Q     + ++  G  AS  S+L    +K + +A  N+ 
Sbjct: 48  INLYINSPGGSVFETMAIIAMLQRHPAKVISYIDGIGASCASVLPMISDKIIMYA--NSM 105

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE--VEKTLDRDHIMSA 192
           +++H      SG A  + + A DI +I + + + Y+   G   +E  +++ LD +  +SA
Sbjct: 106 LMVHNAWTYASGNADQLRKAADDIERINQSMVQHYLTRAGDKLDEDILKQLLDAETWLSA 165

Query: 193 SEACDWGVVDKVL 205
            EA ++G+ D+++
Sbjct: 166 DEAMEYGLCDEII 178


>gi|290894026|ref|ZP_06557000.1| serine protease [Listeria monocytogenes FSL J2-071]
 gi|290556370|gb|EFD89910.1| serine protease [Listeria monocytogenes FSL J2-071]
          Length = 235

 Score = 64.7 bits (156), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 76/133 (57%), Gaps = 4/133 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I+L++NSPGG V  G+AI + ++  K  +  +    AAS+ S++++  +K + +   N+ 
Sbjct: 52  INLHVNSPGGNVFEGIAISNMIKAHKAKVIAYVDALAASIASVIVAGADKVVMY--ENSM 109

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK--TYEEVEKTLDRDHIMSA 192
            ++H P+   SG ++++ +HA D+  I +     Y+   G   + E++++ +  +  +SA
Sbjct: 110 QMIHNPTWNVSGNSTELRKHADDLDAIAQASVLTYLSKAGDKLSEEKIKQIMAEETWLSA 169

Query: 193 SEACDWGVVDKVL 205
            +A   G+ D++L
Sbjct: 170 KDALGHGLCDEIL 182


>gi|302338498|ref|YP_003803704.1| peptidase S14 ClpP [Spirochaeta smaragdinae DSM 11293]
 gi|301635683|gb|ADK81110.1| peptidase S14 ClpP [Spirochaeta smaragdinae DSM 11293]
          Length = 277

 Score = 64.7 bits (156), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 2/137 (1%)

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AE   ++I + +NSPGG V  G+AIY+T+   +  +S    G AAS+ S++  +G +  R
Sbjct: 43  AEGNSRDIVVNLNSPGGDVFEGIAIYNTISAYRSRVSVRITGVAASIASVIALSGSR--R 100

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
                +  ++H P     G+A  +   AQ + KI  ++  IY ++   + +E+EK +D +
Sbjct: 101 IMGEGSFFMIHNPYAVVMGEADVLRSRAQTLDKIALQMVGIYERHSSLSKDEIEKAMDEE 160

Query: 188 HIMSASEACDWGVVDKV 204
                 EA   G  D +
Sbjct: 161 TWYGPDEAYAAGFADAI 177


>gi|194303154|ref|YP_002014569.1| gp101 [Mycobacterium phage Kostya]
 gi|194153202|gb|ACF34268.1| gp101 [Mycobacterium phage Kostya]
          Length = 268

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 85/179 (47%), Gaps = 27/179 (15%)

Query: 46  FVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM-QFIKPPIS 104
           FV G + D+       QL     E+P  ++ + +NSPGG V AGM ++D +  +   P  
Sbjct: 96  FVDG-VNDYSVEACLNQLALWHREDPNCDMHIVMNSPGGSVIAGMHLFDQIAAYSTRPWD 154

Query: 105 T------------FCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIE 152
           T               G AASMG +LL + ++  R   P A +++H+ S G  G+  +IE
Sbjct: 155 TSDRPKGTHKTTMTVRGMAASMGGILLQSVDE--RIIGPEAYLMIHEISAGTGGKIGEIE 212

Query: 153 RHAQDIVKIKR----RLNEIYVKNCGK--TYEEVEKTLDR-DHIMSASEACDWGVVDKV 204
               D+V   R    R+ +++V   G   T EE +    R D  + + EA  +G VD++
Sbjct: 213 ----DMVGWYRHLCARIAKVFVHRAGGKITAEEFDAGWKRTDWWLDSDEALRYGFVDRI 267


>gi|187933949|ref|YP_001886447.1| peptidase S14, ClpP [Clostridium botulinum B str. Eklund 17B]
 gi|187722102|gb|ACD23323.1| peptidase S14, ClpP [Clostridium botulinum B str. Eklund 17B]
          Length = 247

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 76/141 (53%), Gaps = 4/141 (2%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           LE+     EI+LYINS GG V  G+ IY+ ++     ++ +  G A S+ S++   G+K 
Sbjct: 52  LESNQSTSEINLYINSYGGEVKEGLGIYNQLKRHPAQVNVYIDGFACSIASVIAMVGDKV 111

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE--VEKT 183
           +     NA +++H  S G  G A ++ + A D+  I +     Y+   G+  +E  +++ 
Sbjct: 112 VMGT--NALMMIHHASIGCYGNAEELRKAANDVEVIDQASCSSYLTKAGEKLDEATLKQL 169

Query: 184 LDRDHIMSASEACDWGVVDKV 204
           LD    ++AS+  ++G+ D++
Sbjct: 170 LDNQTWLNASQCLEYGLCDEI 190


>gi|260588232|ref|ZP_05854145.1| Clp protease [Blautia hansenii DSM 20583]
 gi|260541370|gb|EEX21939.1| Clp protease [Blautia hansenii DSM 20583]
          Length = 207

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 68/135 (50%), Gaps = 3/135 (2%)

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K I LY+NSPGG VT G+ + D ++  + P+ T C    ASM   +  AG K  R+   
Sbjct: 65  RKPIWLYLNSPGGDVTEGLNVIDVIKASQTPVYTVCFATCASMAFHIFIAGHK--RYCFK 122

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+ +L+H      S  +S  +   + I  +  R+ +  ++N   T E  E   D ++ + 
Sbjct: 123 NSILLIHDGEVSISNSSSKAKDTMKFIESLDERIKQHILENTKITAEFYESIYDTEYYLF 182

Query: 192 ASE-ACDWGVVDKVL 205
           A++   + G VD ++
Sbjct: 183 ANDKGKELGCVDYII 197


>gi|312984199|ref|ZP_07791545.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP
           [Lactobacillus crispatus CTV-05]
 gi|310894418|gb|EFQ43494.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP
           [Lactobacillus crispatus CTV-05]
          Length = 236

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 69/133 (51%), Gaps = 2/133 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           ++I+L INSPGG + AG  +Y  ++     ++   +GQA S  S +  A +K +  + P 
Sbjct: 42  QDITLEINSPGGYIDAGSEMYTALKKYPGNVTAQVVGQACSAASWIALAADK-VEMS-PT 99

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A++++H+ SGG  G   D     Q +  + +   ++Y K  G   +EV + +     M+A
Sbjct: 100 AQMMIHRVSGGVEGNVDDFASAMQSLDSMDQAYVDLYSKRTGLDKQEVYRMMCETTWMNA 159

Query: 193 SEACDWGVVDKVL 205
            +A D G  D ++
Sbjct: 160 KQAVDKGFADSIM 172


>gi|29565981|ref|NP_817552.1| gp103 [Mycobacterium phage Cjw1]
 gi|109302855|ref|YP_654857.1| gp102 [Mycobacterium phage 244]
 gi|29424706|gb|AAN01717.1| gp103 [Mycobacterium phage Cjw1]
 gi|88910146|gb|ABD58077.1| gp102 [Mycobacterium phage 244]
 gi|255928421|gb|ACU42037.1| gp103 [Mycobacterium phage Pumpkin]
          Length = 286

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 85/179 (47%), Gaps = 27/179 (15%)

Query: 46  FVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM-QFIKPPIS 104
           FV G + D+       QL     E+P  ++ + +NSPGG V AGM ++D +  +   P  
Sbjct: 114 FVDG-VNDYSVEACLNQLALWHREDPNCDMHIVMNSPGGSVIAGMHLFDQIAAYSTRPWD 172

Query: 105 T------------FCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIE 152
           T               G AASMG +LL + ++  R   P A +++H+ S G  G+  +IE
Sbjct: 173 TSDRPKGTHKTTMTVRGMAASMGGILLQSVDE--RIIGPEAYLMIHEISAGTGGKIGEIE 230

Query: 153 RHAQDIVKIKR----RLNEIYVKNCGK--TYEEVEKTLDR-DHIMSASEACDWGVVDKV 204
               D+V   R    R+ +++V   G   T EE +    R D  + + EA  +G VD++
Sbjct: 231 ----DMVGWYRHLCARIAKVFVHRAGGKITAEEFDAGWKRTDWWLDSDEALRYGFVDRI 285


>gi|254721484|ref|ZP_05183273.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. A1055]
          Length = 251

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 72/133 (54%), Gaps = 4/133 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I+LYINSPGG V   MAI   +Q     I ++  G  AS  S+L    +K + +A  N+ 
Sbjct: 59  INLYINSPGGSVFETMAIIAMLQRHHAKIISYIDGIGASCASVLPMISDKIIMYA--NSM 116

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE--VEKTLDRDHIMSA 192
           +++H      SG A  + + A DI +I + + + Y+   G   +E  +++ LD +  +SA
Sbjct: 117 MMIHNAWTYASGNADQLRKAADDIERINQSMVQHYLTRAGDKLDEDTLKQLLDAETWLSA 176

Query: 193 SEACDWGVVDKVL 205
            EA  +G+ D+++
Sbjct: 177 EEAMGYGLCDEII 189


>gi|331085734|ref|ZP_08334817.1| hypothetical protein HMPREF0987_01120 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406657|gb|EGG86162.1| hypothetical protein HMPREF0987_01120 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 235

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 85/169 (50%), Gaps = 6/169 (3%)

Query: 43  RIVFVTGQIEDHM--ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           R +F+ G+I D       +  ++   E ++ + +I+++INSPGG V A   IY+ +   K
Sbjct: 17  RTLFLNGEISDETWYGDEVTPKMFKEELQDGEGDITVWINSPGGDVFAAAQIYNMLMDYK 76

Query: 101 PPISTFCMGQAASMGSLLLSAG-EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
             ++    G AAS  S++  AG E  M    P A +++H P+    G +S++++    + 
Sbjct: 77  GNVTVKIDGLAASAASVIAMAGTEVQMS---PVAMMMIHNPATIAIGDSSEMKKAIDMLD 133

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           ++K  +   Y    G +   +   +D +   +A +A + G  DK+L S+
Sbjct: 134 EVKESIMNAYEIKTGLSRSRISHLMDAESWFNAKKAVELGFADKLLFSK 182


>gi|331090230|ref|ZP_08339118.1| hypothetical protein HMPREF1025_02701 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330402176|gb|EGG81748.1| hypothetical protein HMPREF1025_02701 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 238

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 88/178 (49%), Gaps = 4/178 (2%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHM--ATLICAQLLFLEAENPQKEISLYINSPGGVVT 87
           +R +  + R   ER +F+ G+I D       +  +L   E  + + +I+++INSPGG V 
Sbjct: 2   KRKFWNWVRNEGERTLFLNGEISDETWYGDEVTPKLFKDELLSGEGDITVWINSPGGDVF 61

Query: 88  AGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQ 147
           A   IY+ +   K  ++    G AAS  S++  AG K +    P A +++H P+    G 
Sbjct: 62  AAAQIYNMLMDYKGNVTVKIDGLAASAASVIAMAGTKVLMS--PVAMMMIHNPATIAIGD 119

Query: 148 ASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            +++++  + + ++K  +   Y    G    ++   +D +   +A +A + G  D++L
Sbjct: 120 TAEMKKAIEMLDEVKESIMNAYEIKTGLNRTKISHLMDAESWFNAKKAVELGFADEIL 177


>gi|307129028|ref|YP_003881044.1| Prophage Clp protease-like protein [Dickeya dadantii 3937]
 gi|306526557|gb|ADM96487.1| Prophage Clp protease-like protein [Dickeya dadantii 3937]
          Length = 643

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 81/151 (53%), Gaps = 9/151 (5%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L+A      I+L I+SPGG V  G+AIY+ +      I+    G AASM S++  AG+  
Sbjct: 40  LKALGDISHITLNIHSPGGDVFDGIAIYNLLSKHPAKITVHIDGLAASMASVIAMAGD-- 97

Query: 126 MRFALP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
            R  +P NA +++H+P G   G A+D+  +A+ + K++  L   Y +  GK+ EE+   L
Sbjct: 98  -RIVMPENALMMIHKPWGISGGNANDMRDYAELLDKVEHVLIPAYARKTGKSAEELAAML 156

Query: 185 DRDHIMSASEACDWGVVDKVL-----MSRID 210
           + +  M   E    G  D++L     M+RI+
Sbjct: 157 EEETWMDGRECVAQGFADELLPAVSAMARIE 187


>gi|115468790|ref|NP_001057994.1| Os06g0598200 [Oryza sativa Japonica Group]
 gi|21327370|gb|AAM48275.1|AC122148_28 Putative ATP-dependent Clp protease proteolytic subunit [Oryza
           sativa Japonica Group]
 gi|31431491|gb|AAP53264.1| ATP-dependent Clp protease proteolytic subunit, putative [Oryza
           sativa Japonica Group]
 gi|113596034|dbj|BAF19908.1| Os06g0598200 [Oryza sativa Japonica Group]
          Length = 115

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 114 MGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKN 172
           M S +L  GE   R A P+ARI+LHQP S  +  +  +     +++ K++  +  +Y   
Sbjct: 1   MASFILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFLLEVEELHKVREMITRVYALR 60

Query: 173 CGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            GK +  V + ++RD  MSA EA  +G+VD V
Sbjct: 61  TGKPFWVVSEDMERDVFMSADEAKAYGLVDIV 92


>gi|119898161|ref|YP_933374.1| endopeptidase Clp [Azoarcus sp. BH72]
 gi|119670574|emb|CAL94487.1| Endopeptidase Clp [Azoarcus sp. BH72]
          Length = 625

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 85/163 (52%), Gaps = 7/163 (4%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           R   + G+I D  A  I A+L  L  ++P   + + INS GG V AG+ IY+ ++  +P 
Sbjct: 2   RTTEIIGEITDVTAREILAELA-LAGDSP---VVVRINSQGGSVQAGVTIYEALKAHRPS 57

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIK 162
           ++   +G A S  SL+  AG + +R A P + +++H P    +G AS++   A  +  + 
Sbjct: 58  VTVEIVGWALSAASLIAMAG-RPVRMA-PTSLLMVHAPWTSATGNASELRDTAAALDAVA 115

Query: 163 RRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           R +   + +   +  + ++  L  +H  +A EA   G+ D+++
Sbjct: 116 RSMRAAFSR-TKQPPKTIDAWLTGEHWFTAEEAIAAGLADELI 157


>gi|168756419|ref|ZP_02781426.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC4401]
 gi|168770135|ref|ZP_02795142.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC4486]
 gi|189356545|gb|EDU74964.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC4401]
 gi|189361013|gb|EDU79432.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC4486]
          Length = 629

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 72/143 (50%), Gaps = 9/143 (6%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
           EI L I+SPGG +  G+AIY+ ++           G AASM S +   G+      +P N
Sbjct: 44  EIHLRIHSPGGDIFEGLAIYNALKNHPAKKIVHIEGMAASMASFIAMCGD---HIVMPEN 100

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A +++H P G  +G + D+ R A  + K+   + E Y    G++ +E+   ++ +  M  
Sbjct: 101 AMMMIHAPRGVTAGVSGDVRRFADLMDKLGDTMAETYAGRTGRSKQEITAMMEAETWMDG 160

Query: 193 SEACDWGVVDKVL-----MSRID 210
           +E    G  D+V+     M+RI+
Sbjct: 161 NECKANGFADEVIAAITAMARIE 183


>gi|168769871|ref|ZP_02794878.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC4486]
 gi|195937919|ref|ZP_03083301.1| putative protease/scaffold protein [Escherichia coli O157:H7 str.
           EC4024]
 gi|189361107|gb|EDU79526.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC4486]
          Length = 629

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 72/143 (50%), Gaps = 9/143 (6%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
           EI L I+SPGG +  G+AIY+ ++           G AASM S +   G+      +P N
Sbjct: 44  EIHLRIHSPGGDIFEGLAIYNALKNHPAKKIVHIEGMAASMASFIAMCGD---HIVMPEN 100

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A +++H P G  +G + D+ R A  + K+   + E Y    G++ +E+   ++ +  M  
Sbjct: 101 AMMMIHAPRGVTAGVSGDVRRFADLMDKLGDTMAETYAGRTGRSKQEITAMMEAETWMDG 160

Query: 193 SEACDWGVVDKVL-----MSRID 210
           +E    G  D+V+     M+RI+
Sbjct: 161 NECKANGFADEVIAAITAMARIE 183


>gi|74311435|ref|YP_309854.1| putative protease/scaffold protein [Shigella sonnei Ss046]
 gi|73854912|gb|AAZ87619.1| putative protease/scaffold protein [Shigella sonnei Ss046]
          Length = 381

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 72/143 (50%), Gaps = 9/143 (6%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
           EI L I+SPGG +  G+AIY+ ++           G AASM S +   G+      +P N
Sbjct: 44  EIHLRIHSPGGDIFEGLAIYNALKNHPAKKIVHIEGMAASMASFIAMCGD---HIVMPEN 100

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A +++H P G  +G + D+ R A  + K+   + E Y    G++ +E+   ++ +  M  
Sbjct: 101 AMMMIHAPRGVTAGVSGDVRRFADLMDKLGDTMAETYAGRTGRSKQEITAMMEAETWMDG 160

Query: 193 SEACDWGVVDKVL-----MSRID 210
           +E    G  D+V+     M+RI+
Sbjct: 161 NECKANGFADEVIPAITAMARIE 183


>gi|326338731|gb|EGD62551.1| Prophage Clp protease-like protein [Escherichia coli O157:H7 str.
           1125]
          Length = 629

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 72/143 (50%), Gaps = 9/143 (6%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
           EI L I+SPGG +  G+AIY+ ++           G AASM S +   G+      +P N
Sbjct: 44  EIHLRIHSPGGDIFEGLAIYNALKNHPAKKIVHIEGMAASMASFIAMCGD---HIVMPEN 100

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A +++H P G  +G + D+ R A  + K+   + E Y    G++ +E+   ++ +  M  
Sbjct: 101 AMMMIHAPRGVTAGVSGDVRRFADLMDKLGDTMAETYAGRTGRSKQEITAMMEAETWMDG 160

Query: 193 SEACDWGVVDKVL-----MSRID 210
           +E    G  D+V+     M+RI+
Sbjct: 161 NECKANGFADEVIAAITAMARIE 183


>gi|327252451|gb|EGE64110.1| clp protease family protein [Escherichia coli STEC_7v]
          Length = 629

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 72/143 (50%), Gaps = 9/143 (6%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
           EI L I+SPGG +  G+AIY+ ++           G AASM S +   G+      +P N
Sbjct: 44  EIHLRIHSPGGDIFEGLAIYNALKNHPAKKIVHIEGMAASMASFIAMCGD---HIVMPEN 100

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A +++H P G  +G + D+ R A  + K+   + E Y    G++ +E+   ++ +  M  
Sbjct: 101 AMMMIHAPRGVTAGVSGDVRRFADLMDKLGDTMAETYAGRTGRSKQEITAMMEAETWMDG 160

Query: 193 SEACDWGVVDKVL-----MSRID 210
           +E    G  D+V+     M+RI+
Sbjct: 161 NECKANGFADEVIPAITAMARIE 183


>gi|153810555|ref|ZP_01963223.1| hypothetical protein RUMOBE_00936 [Ruminococcus obeum ATCC 29174]
 gi|149833734|gb|EDM88815.1| hypothetical protein RUMOBE_00936 [Ruminococcus obeum ATCC 29174]
          Length = 223

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 73/134 (54%), Gaps = 5/134 (3%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           +EI + +NS GG V AG  IY  ++  K  +       A S   ++  AG+  M    P 
Sbjct: 43  EEIEVLVNSGGGSVMAGQEIYSALKQ-KKNVVIKIQSMAGSAAGVIAMAGKCQMS---PV 98

Query: 133 ARILLHQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           A I++H  S  G SG   D++++A+ + ++   L   Y +  G++ +E+ K +DR+  ++
Sbjct: 99  AMIMIHNVSMSGASGDYHDMQKNAEILKQMNSALAAAYTEKSGRSLDEILKLMDRETWLT 158

Query: 192 ASEACDWGVVDKVL 205
           A++  D+G VD+++
Sbjct: 159 ANQCLDYGFVDEIM 172


>gi|261209157|ref|ZP_05923553.1| serine protease [Enterococcus faecium TC 6]
 gi|289566715|ref|ZP_06447130.1| serine protease [Enterococcus faecium D344SRF]
 gi|260076870|gb|EEW64601.1| serine protease [Enterococcus faecium TC 6]
 gi|289161485|gb|EFD09370.1| serine protease [Enterococcus faecium D344SRF]
          Length = 241

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 77/134 (57%), Gaps = 6/134 (4%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
           +I+L+INSPGG V  G+AI + ++  K  +       AAS+ S+++++ ++ +   +P N
Sbjct: 51  QINLHINSPGGSVFEGIAIGNMLRQHKARVVAHVDALAASIASVIVASCDEVI---MPEN 107

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK--TYEEVEKTLDRDHIM 190
           + +++H P     G A ++ + A D+ KI       Y+   G+  T E++++ +D +  M
Sbjct: 108 SMLMIHNPWTISMGNAKELRKQADDLDKIAESSVVTYLAKAGEKLTEEKIKQIMDEETWM 167

Query: 191 SASEACDWGVVDKV 204
           SA EA ++G+ D V
Sbjct: 168 SAQEAYNYGLCDVV 181


>gi|257899073|ref|ZP_05678726.1| serine protease [Enterococcus faecium Com15]
 gi|257836985|gb|EEV62059.1| serine protease [Enterococcus faecium Com15]
          Length = 241

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 77/134 (57%), Gaps = 6/134 (4%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
           +I+L+INSPGG V  G+AI + ++  K  +       AAS+ S+++++ ++ +   +P N
Sbjct: 51  QINLHINSPGGSVFEGIAIGNMLRQHKARVVAHVDALAASIASVIVASCDEVI---MPEN 107

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK--TYEEVEKTLDRDHIM 190
           + +++H P     G A ++ + A D+ KI       Y+   G+  T E++++ +D +  M
Sbjct: 108 SMLMIHNPWTISMGNAKELRKQADDLDKIAESSVVTYLAKAGEKLTEEKIKQIMDEETWM 167

Query: 191 SASEACDWGVVDKV 204
           SA EA ++G+ D V
Sbjct: 168 SAQEAYNYGLCDVV 181


>gi|76787240|ref|YP_329374.1| prophage LambdaSa04, ClpP endopeptidase [Streptococcus agalactiae
           A909]
 gi|76562297|gb|ABA44881.1| prophage LambdaSa04, ClpP endopeptidase (S14) family, non-peptidase
           homologue, putative [Streptococcus agalactiae A909]
          Length = 232

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 82/175 (46%), Gaps = 6/175 (3%)

Query: 43  RIVFVTGQIEDH--MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           R + + GQI D       +  QL   +  +   +I+L+INSPGG V A   IY+ +   +
Sbjct: 14  RTLRIEGQIADETWFGDEVTPQLFKNDLTSETGDITLWINSPGGDVFAAAQIYNMLMDYQ 73

Query: 101 PPISTFCMGQAASMGSLLLSAGEK-GMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
             +     G AAS  S++  AG    M    P A +++H P     G+A D+ +  + + 
Sbjct: 74  GDVHVIIDGLAASAASVIAMAGTTVSMS---PVAMMMIHNPWTFAQGEAKDMAKVIEMLG 130

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           +IK  +   Y    G +  ++   +D +   +A +A + G  DKVL  + +  E+
Sbjct: 131 EIKESIINAYELRTGLSRTKISHLMDSESWFNAKKAVELGFADKVLFEKEETPEQ 185


>gi|168204793|ref|ZP_02630798.1| phage protein [Clostridium perfringens E str. JGS1987]
 gi|170663602|gb|EDT16285.1| phage protein [Clostridium perfringens E str. JGS1987]
          Length = 672

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 74/141 (52%), Gaps = 4/141 (2%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           ++A N +K +++ INSPGG + A   IY  ++  K  I     G AAS  S++  AG+  
Sbjct: 36  IKAANGEK-LTIKINSPGGDIFAASDIYTELREYKGEIEIKITGMAASAASVIAMAGKSS 94

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
           M    P A++++H  S G  G   D+E  A+ +      +   Y+   G + EE  + ++
Sbjct: 95  MS---PTAQLMVHNVSTGTWGDYRDMEHTAEVLKNANDTIANAYMCKTGMSREEALELMN 151

Query: 186 RDHIMSASEACDWGVVDKVLM 206
            +  +SA++A + G +D+++ 
Sbjct: 152 NETYLSATKAKELGFIDEIMF 172


>gi|313499018|gb|ADR60384.1| Peptidase S14 ClpP [Pseudomonas putida BIRD-1]
          Length = 285

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 75/136 (55%), Gaps = 2/136 (1%)

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           ++++++YINSPGG +  G+AIY+ +Q     ++T  +G AAS  S++  AG+K  R    
Sbjct: 66  ERDVTVYINSPGGDMFEGIAIYNRLQEHSHEVTTKVLGMAASAASIVFLAGKK--REVAS 123

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           +A +++H      +G  + +   A D+ +    + ++Y +  G++ E++ + +D +  + 
Sbjct: 124 SAFLMIHNCWTWLAGNRNYLRDIANDMEEFDAAMADLYAETSGQSAEDMAELMDDETYIR 183

Query: 192 ASEACDWGVVDKVLMS 207
              A + G+   +L S
Sbjct: 184 GKRAVELGLATGLLSS 199


>gi|319757818|gb|ADV69760.1| ClpP protease family protein [Streptococcus suis JS14]
          Length = 231

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 11/181 (6%)

Query: 43  RIVFVTGQIEDH--MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           R + + GQI D       +  Q+   +      +I+L+INSPGG V A   IY+ +   K
Sbjct: 14  RTLRIEGQIADETWFGDEVTPQVFKNDLHAGNGDITLWINSPGGDVFAAAQIYNMLMDYK 73

Query: 101 PPISTFCMGQAASMGSLLLSAGEK-GMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
             +     G AAS  S++  AG    M    P A +++H P     G+A D+++  + + 
Sbjct: 74  GDVHVVIDGLAASAASVIAMAGTTVSMS---PVAMMMIHNPWTVAQGEAKDMQKVIEMLG 130

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR-----IDIEEK 214
           +IK  +   Y    G +  ++   +D +   +A +A + G  DK+L  +     +DIE  
Sbjct: 131 EIKESIINAYELRTGLSRTKLSHLMDSESWFNAKKAVELGFADKILFDKQEEHGMDIESY 190

Query: 215 S 215
           S
Sbjct: 191 S 191


>gi|75764057|ref|ZP_00743661.1| ATP-dependent endopeptidase clp proteolytic subunit clpP [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|74488455|gb|EAO52067.1| ATP-dependent endopeptidase clp proteolytic subunit clpP [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
          Length = 244

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 73/127 (57%), Gaps = 6/127 (4%)

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +  +++Y+NS GG V AG+AIY+ ++  K   + +  G AAS+ S++  AG+   R  +P
Sbjct: 62  KSNLNIYVNSGGGSVFAGLAIYNMLKRNKAQKTVYVDGVAASIASVIALAGD---RVVVP 118

Query: 132 -NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC--GKTYEEVEKTLDRDH 188
            NA +++H+P     G A+ + + A+D+  ++  +  +Y +N   G   E +++ +D + 
Sbjct: 119 SNAFLMVHKPWTVSRGNANVLRKMAEDLDNLEAGIMNVYKENLKEGIEMEVIQQLVDAET 178

Query: 189 IMSASEA 195
            +S  EA
Sbjct: 179 WLSGEEA 185


>gi|189501545|ref|YP_001957262.1| peptidase S14 ClpP [Candidatus Amoebophilus asiaticus 5a2]
 gi|189496986|gb|ACE05533.1| peptidase S14 ClpP [Candidatus Amoebophilus asiaticus 5a2]
          Length = 455

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 73/147 (49%), Gaps = 3/147 (2%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI-NSPGGVVTAGMAIYDTMQ 97
           +L +R V + G +    A  I  ++ +   ++  K I + I NSPGG   AG+ I   MQ
Sbjct: 219 VLSDRAVSLDGVVTSWKANYITDRIKYFNNKDKTKPIFIVIENSPGGSALAGLHIVQAMQ 278

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
             + P+       AASM +L+ +  +K   +A PNA +L HQP     G   +++   + 
Sbjct: 279 NSQAPVYVVLKTFAASMAALITTLAKKS--YAYPNAILLHHQPWSFTGGNLRELKEEIEF 336

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTL 184
           + ++ +RL     K  G + ++++K L
Sbjct: 337 MKELWKRLGGQVAKKMGISLDKLDKQL 363


>gi|167758211|ref|ZP_02430338.1| hypothetical protein CLOSCI_00549 [Clostridium scindens ATCC 35704]
 gi|167664108|gb|EDS08238.1| hypothetical protein CLOSCI_00549 [Clostridium scindens ATCC 35704]
          Length = 251

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 74/135 (54%), Gaps = 5/135 (3%)

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQ--FIKPPISTFCMGQAASMGSLLLSAGEKG 125
           +E   K++++Y+NS GG V AG+AIY+ ++    K  +  F  G A S+ S+L  AG + 
Sbjct: 48  SEQEGKDLNVYVNSGGGSVFAGIAIYNMLKRHAAKNNVKVFVDGLAGSIASVLAFAGSEA 107

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC--GKTYEEVEKT 183
                 NA +++H P     G ++D+ + A D+ +IK  +  +Y ++   G T +++   
Sbjct: 108 PEIP-SNAFLMIHNPWSYCEGNSADMRKMADDLDQIKTGILNVYAEHLKEGVTIDQISAL 166

Query: 184 LDRDHIMSASEACDW 198
           +D +  ++  +A ++
Sbjct: 167 MDAETWLNGQQAAEY 181


>gi|228899164|ref|ZP_04063435.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis IBL 4222]
 gi|228860497|gb|EEN04886.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis IBL 4222]
          Length = 197

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 73/127 (57%), Gaps = 6/127 (4%)

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +  +++Y+NS GG V AG+AIY+ ++  K   + +  G AAS+ S++  AG+   R  +P
Sbjct: 15  KSNLNIYVNSGGGSVFAGLAIYNMLKRNKAQKTVYVDGVAASIASVIALAGD---RVVVP 71

Query: 132 -NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC--GKTYEEVEKTLDRDH 188
            NA +++H+P     G A+ + + A+D+  ++  +  +Y +N   G   E +++ +D + 
Sbjct: 72  SNAFLMVHKPWTVSRGNANVLRKMAEDLDNLEAGIMNVYKENLKEGIEMEVIQQLVDAET 131

Query: 189 IMSASEA 195
            +S  EA
Sbjct: 132 WLSGEEA 138


>gi|217961372|ref|YP_002339940.1| Clp protease [Bacillus cereus AH187]
 gi|217065025|gb|ACJ79275.1| Clp protease [Bacillus cereus AH187]
          Length = 230

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 71/129 (55%), Gaps = 6/129 (4%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP- 131
           K++++YINS GG V AGMAIY+ ++  +   +    G   S+ S++  AG+K     +P 
Sbjct: 50  KDLNIYINSGGGSVFAGMAIYNMIKRHEGYKTVHIDGLGGSIASVIAFAGDK---LIVPS 106

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC--GKTYEEVEKTLDRDHI 189
           NA +++H+P  G  G A+D  + A D+  I+  +  +Y  N   G   EE+ + +  +  
Sbjct: 107 NAYLMIHKPWNGTYGNANDFRKMADDLDAIEEGIINVYKDNLKEGVDIEEIREMVQNETW 166

Query: 190 MSASEACDW 198
           ++  +A ++
Sbjct: 167 LNGLKASEY 175


>gi|213616068|ref|ZP_03371894.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
          enterica subsp. enterica serovar Typhi str. E98-2068]
          Length = 80

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 28/46 (60%), Positives = 38/46 (82%), Gaps = 2/46 (4%)

Query: 1  MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVF 46
          MS+ G  ++D+    + LVPMV+EQT+RGERS+DIYSRLLKER++F
Sbjct: 37 MSYSG--ERDNLAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIF 80


>gi|188589670|ref|YP_001921112.1| peptidase S14, ClpP [Clostridium botulinum E3 str. Alaska E43]
 gi|188499951|gb|ACD53087.1| peptidase S14, ClpP [Clostridium botulinum E3 str. Alaska E43]
          Length = 377

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 6/141 (4%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I++ INS GG V    AIY  ++  K  I+    G A S  +++  AG+K +   +P+  
Sbjct: 53  ITVRINSNGGDVFTASAIYTLLKDCKASITVKIDGMAMSAATVVAMAGDKVL---IPSTS 109

Query: 135 I-LLHQPSGGFSG--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           I ++H P  G  G    SD+E+    +  +K  +   Y+    KT EE+E  +  +  ++
Sbjct: 110 IFMIHDPLAGLCGYYNVSDLEKVINRLSVVKNTIINAYINKTDKTKEEIEDLMTNELWLT 169

Query: 192 ASEACDWGVVDKVLMSRIDIE 212
             +A + G  D+V+ S  D E
Sbjct: 170 GEDAVNEGFCDEVMFSETDNE 190


>gi|238695592|ref|YP_002922619.1| P05 [Xanthomonas phage phiL7]
 gi|190343959|gb|ACE75745.1| P05 [Xanthomonas phage phiL7]
          Length = 245

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 72/132 (54%), Gaps = 2/132 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           ++++ I+SPGG + AG+AIY+ ++     ++   +G AAS  S++  AG+  +    P A
Sbjct: 74  DVTVNIDSPGGDMFAGLAIYNQLRAHDGVVTVNVVGTAASAASVIAMAGD--VVNMHPAA 131

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            I++HQ     +G + D    A+ +    + + EIY    GK   EVE+ +  +   +A 
Sbjct: 132 FIMIHQTWLLAAGNSRDFIALAEMLAPFDKAMAEIYASRTGKPLAEVEQLMAEETWFNAE 191

Query: 194 EACDWGVVDKVL 205
           EA  +G+ DKVL
Sbjct: 192 EAVAYGLADKVL 203


>gi|296085762|emb|CBI29573.3| unnamed protein product [Vitis vinifera]
          Length = 91

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 46/72 (63%)

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++ QP   F GQA+DI+   +++  +K  L ++Y K+ GK+ EE+E  + R    S SEA
Sbjct: 1   MIKQPIARFQGQATDIDLARKEVKNVKAELVKLYAKHIGKSPEEIEADIRRPKYFSPSEA 60

Query: 196 CDWGVVDKVLMS 207
            ++G++DKVL +
Sbjct: 61  VEYGIIDKVLYN 72


>gi|262047939|ref|ZP_06020882.1| phage Clp-protease [Lactobacillus crispatus MV-3A-US]
 gi|260571752|gb|EEX28330.1| phage Clp-protease [Lactobacillus crispatus MV-3A-US]
          Length = 241

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 69/133 (51%), Gaps = 2/133 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           ++I+L INSPGG + AG  +Y  ++     ++   +GQA S  S +  A +K +  + P 
Sbjct: 48  QDITLEINSPGGYIDAGSEMYTDLKKYPGNVTAQVVGQACSAASWIALAADK-VEMS-PT 105

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A++++H+ S G  G   D+    Q +  + +   ++Y K  G   +E+ + +     M+A
Sbjct: 106 AQMMIHRVSVGVEGNVDDLTSALQSLDSMDQTYVDLYSKRTGLDKQEIYRMMCATTWMNA 165

Query: 193 SEACDWGVVDKVL 205
            +A D G  D ++
Sbjct: 166 KQAVDKGFADSIM 178


>gi|313575379|emb|CBR26908.1| hypothetical protein [Streptococcus phage phi-SsUD.1]
          Length = 236

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 79/169 (46%), Gaps = 6/169 (3%)

Query: 43  RIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           R + + GQI  E      +  Q+   +      +I+L+INSPGG V A   IY+ +   K
Sbjct: 19  RTLRIEGQIAEETWFGDEVTPQVFKNDLHAGSGDITLWINSPGGDVFAAAQIYNMLMDYK 78

Query: 101 PPISTFCMGQAASMGSLLLSAGEK-GMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
             +     G AAS  S++  AG    M    P A +++H P     G+A D+++  + + 
Sbjct: 79  GDVHVVIDGLAASAASVIAMAGTTVSMS---PVAMMMIHNPWTVAQGEAKDMQKVIEMLG 135

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           +IK  +   Y    G +  ++   +D +   +A +A + G  DK+L  +
Sbjct: 136 EIKESIINAYELRTGLSRTKLSHLMDSESWFNAKKAVELGFADKILFDK 184


>gi|157362829|ref|YP_001471688.1| peptidase S14 ClpP [Serratia proteamaculans 568]
 gi|157324916|gb|ABV44012.1| peptidase S14 ClpP [Serratia proteamaculans 568]
          Length = 365

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 80/157 (50%), Gaps = 8/157 (5%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM 108
           G+ +D  +  +  QL  + +    KEI + INS GG V    AI  T++     ++ F  
Sbjct: 31  GEWDDVNSRDVATQLKAVTS----KEIHVKINSYGGSVFTAQAILSTLKRHTAAVTVFID 86

Query: 109 GQAASMGSLLLSAGEKGMRFALP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNE 167
           G AAS  +++  AGE   R  +P NA +++H P     G A+D   +A  + +I+  +  
Sbjct: 87  GIAASAATIIAMAGE---RVVIPSNAMMMIHNPLTWADGNAADFREYADMLDRIRDSIIA 143

Query: 168 IYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            Y      T+E++ + +D +  MSA+EA D G  D+V
Sbjct: 144 AYQSKTSLTHEKLVELMDAETWMSATEAVDLGFADEV 180


>gi|28211745|ref|NP_782689.1| phage protein [Clostridium tetani E88]
 gi|28204187|gb|AAO36626.1| phage protein [Clostridium tetani E88]
          Length = 226

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 68/129 (52%), Gaps = 2/129 (1%)

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INS GG V AG  IY  ++  K  ++   +G AAS  S++  AG+K      P  +I++H
Sbjct: 48  INSGGGSVFAGSEIYTLLKDYKGNVTVKIVGLAASAASVIAMAGDK--VLISPTGQIMIH 105

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
             SG FSG   ++E+ ++ +  +   ++  Y    G + EE+   ++++  ++   A D 
Sbjct: 106 NASGCFSGDYRNMEKGSEILKNVNITISNAYKLKTGLSSEELLDMMNKETWLTPQNALDN 165

Query: 199 GVVDKVLMS 207
             VD+++ +
Sbjct: 166 KFVDEIMFT 174


>gi|217973756|ref|YP_002358507.1| peptidase S14 ClpP [Shewanella baltica OS223]
 gi|217498891|gb|ACK47084.1| peptidase S14 ClpP [Shewanella baltica OS223]
          Length = 284

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 68/133 (51%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K++++YINSPGG +  G+AIY+ +   K  ++T  +G AAS  S++  AG    RF   +
Sbjct: 70  KDVTVYINSPGGDMFEGIAIYNRLLEHKGKVTTKVLGLAASAASVIYMAGADDARFVASS 129

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A +++H       G    +   A D+ +    + ++YV+  G++ + +   +D +  +  
Sbjct: 130 AFLMIHNCWVFAIGNRHALRNIADDMEEFDAAMVDLYVEGSGQSEKAIATMMDEETFIRG 189

Query: 193 SEACDWGVVDKVL 205
            +A + G     L
Sbjct: 190 KKAVELGFAAGTL 202


>gi|317132778|ref|YP_004092092.1| peptidase S14 ClpP [Ethanoligenens harbinense YUAN-3]
 gi|315470757|gb|ADU27361.1| peptidase S14 ClpP [Ethanoligenens harbinense YUAN-3]
          Length = 248

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 81/168 (48%), Gaps = 4/168 (2%)

Query: 42  ERIVFVTGQIEDHM--ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           +R +++ G+I D       +  Q+   E  + +  I+L+INSPGG V A   IY+ +   
Sbjct: 20  DRTLYLDGEISDETWYGDEVTPQVFKDELNSGKGNITLWINSPGGDVFAAAQIYNMLMDY 79

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
              ++      AAS  S++  AG K      P A +++H P+    G + ++++    + 
Sbjct: 80  PYDVTVKIDALAASAASVIAMAGTKVCMS--PVAMLMVHNPATIAIGDSEEMQKAIDMLS 137

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           ++K  +   Y    G +  ++ K +D +  M+A EA   G  D++L +
Sbjct: 138 EVKESIMNAYEIKSGLSRNKISKLMDAETWMNAKEAKKLGFADEILFA 185


>gi|153811342|ref|ZP_01964010.1| hypothetical protein RUMOBE_01734 [Ruminococcus obeum ATCC 29174]
 gi|149832469|gb|EDM87553.1| hypothetical protein RUMOBE_01734 [Ruminococcus obeum ATCC 29174]
          Length = 252

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 71/133 (53%), Gaps = 4/133 (3%)

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           F+    P  E+++YINS GG V AG+AI+  +       +    G AAS+ S++L A + 
Sbjct: 62  FMNQIEPGAELTVYINSGGGDVFAGIAIHSILSRHTGHKTGIVDGMAASIASVILMACDS 121

Query: 125 GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC--GKTYEEVEK 182
            +  +   A+I++H+P     G A D +R   ++ K ++ + +IY+     G T E+V  
Sbjct: 122 IVMSS--GAQIMIHKPLSWAYGNADDFQRLISELDKCQKSITDIYMGRVKEGVTEEQVTD 179

Query: 183 TLDRDHIMSASEA 195
            ++ +  M+A EA
Sbjct: 180 LINAETWMTAEEA 192


>gi|241894905|ref|ZP_04782201.1| ATP-dependent Clp protease proteolytic subunit [Weissella
           paramesenteroides ATCC 33313]
 gi|241871913|gb|EER75664.1| ATP-dependent Clp protease proteolytic subunit [Weissella
           paramesenteroides ATCC 33313]
          Length = 242

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 4/134 (2%)

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
           P K I++ INSPGG V  G+AIY+ ++     ++    G AAS+ S++  AG+      +
Sbjct: 45  PVKTINMSINSPGGSVFDGIAIYNMLKKNPATVNVTVEGLAASIASVIAMAGDT---LTM 101

Query: 131 PNARILL-HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
               +L+ H P     G AS++   A  + +I+     IY +  G   E ++  +D +  
Sbjct: 102 DTGSMLMIHNPFTMAVGNASELREMADTLDQIRESSVNIYHEKTGIDKEAIKSVMDNETW 161

Query: 190 MSASEACDWGVVDK 203
           ++A EA   G  D+
Sbjct: 162 LTADEAITAGWADQ 175


>gi|296051584|ref|YP_003632258.1| peptidase S14 ClpP [Planctomyces limnophilus DSM 3776]
 gi|296016821|gb|ADG70059.1| peptidase S14 ClpP [Planctomyces limnophilus DSM 3776]
          Length = 179

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 2/131 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           E+ + INS GG V    AIY  ++     I     G+A S  S +  AG+K +  A  + 
Sbjct: 14  EVVIRINSVGGYVGEASAIYQLLKEHPANIHVKIDGEAISCASWIAMAGDK-ITIA-EHG 71

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H PS   SG A D+ + A+ +   K  +  IY    G   E+V+K +  +  M+A+
Sbjct: 72  LMMVHDPSTWISGTADDLRKEAEVLDSYKEVIAGIYAARSGTDVEDVKKMMSDETWMTAT 131

Query: 194 EACDWGVVDKV 204
           +A D G VD++
Sbjct: 132 QAKDKGFVDEI 142


>gi|228959905|ref|ZP_04121572.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228799786|gb|EEM46736.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 260

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 68/132 (51%), Gaps = 2/132 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           ++ + INSPGG V  G  IY  ++     +    +G AAS  S++  AG+K +R + P A
Sbjct: 44  DLIVLINSPGGYVHEGSEIYTALKNYPGNVEVQIVGLAASAASVIAMAGDK-VRIS-PTA 101

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           +I++H  S    G   D+E+ A+ +    R +   YV   GK+ EE+   +  +  M   
Sbjct: 102 QIMIHNASMWNGGDHRDMEKAAEMLKTTDRAIVNAYVIKSGKSEEELLNMMAEETWMGPQ 161

Query: 194 EACDWGVVDKVL 205
           +A +   VD+++
Sbjct: 162 QALENNFVDEIM 173


>gi|148555105|ref|YP_001262687.1| peptidase S14, ClpP [Sphingomonas wittichii RW1]
 gi|148500295|gb|ABQ68549.1| peptidase S14, ClpP [Sphingomonas wittichii RW1]
          Length = 688

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 5/125 (4%)

Query: 74  EISLYINSPGGVVTAGMAIYDTM---QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
           ++ + INSPGG V  G+AIY+ +   +     ++T   G AASMGS+L  AGE+      
Sbjct: 32  DLDVRINSPGGYVMEGLAIYNAIIRERGKGRKVTTHIDGLAASMGSILAMAGEE--IVMA 89

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
            NA +++H P     G A ++ R A  + +++ ++  IY K  G   + +   LD +  M
Sbjct: 90  DNALLMIHNPWDCACGDAIELRRAADRLDQLRDQMVGIYSKATGLEADALIPMLDAETWM 149

Query: 191 SASEA 195
           +A+EA
Sbjct: 150 TATEA 154


>gi|197303514|ref|ZP_03168553.1| hypothetical protein RUMLAC_02236 [Ruminococcus lactaris ATCC
           29176]
 gi|197297512|gb|EDY32073.1| hypothetical protein RUMLAC_02236 [Ruminococcus lactaris ATCC
           29176]
          Length = 334

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 84/170 (49%), Gaps = 4/170 (2%)

Query: 41  KERIVFVTGQI-EDHMATLICAQLLFLEAENP-QKEISLYINSPGGVVTAGMAIYDTMQF 98
           +ERI+F+ G I ED          LF +  N    +I+L+INSPGG   A   I++ +  
Sbjct: 22  EERILFMNGVIAEDSWFDDDVTPALFKDELNAGTGDITLWINSPGGDCVAAAQIFNMLSE 81

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
               ++    G AAS  S++  AG +   +  P + +++H P+    G   ++++  + +
Sbjct: 82  YPGKVTVKIDGLAASAASVIAMAGTE--VWMSPVSMMMIHNPATVAWGDHVEMKKAMELL 139

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
             +K  +   YV+  G++  ++   +D +  M A++A + G  D +L  +
Sbjct: 140 DAVKESIINAYVRKTGQSRAKLSHLMDAETWMDANKAVELGFADDILFQK 189


>gi|77411264|ref|ZP_00787614.1| ClpP protease family protein [Streptococcus agalactiae CJB111]
 gi|77162690|gb|EAO73651.1| ClpP protease family protein [Streptococcus agalactiae CJB111]
          Length = 232

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 22/183 (12%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQK----------EISLYINSPGGVVTAGMAI 92
           R + + GQI D        +  F +   PQ+          +I+L+INSPGG V A   I
Sbjct: 14  RTLRIEGQIAD--------ETWFGDEVTPQQFKNDLISGTGDITLWINSPGGDVFAAAQI 65

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEK-GMRFALPNARILLHQPSGGFSGQASDI 151
           Y+ +   +  +     G AAS  S++  AG    M    P A +++H P     G+A D+
Sbjct: 66  YNMLMDYQGDVHVIIDGLAASAASVIAMAGTTVSMS---PVAMMMIHNPWTFAQGEAKDM 122

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
            +  + + +IK  +   Y    G +  ++   +D +   +A +A + G  DKVL  + + 
Sbjct: 123 AKVIEMLGEIKESIINAYELRTGLSRTKISHLMDSESWFNAKKAVELGFADKVLFEKEET 182

Query: 212 EEK 214
            E+
Sbjct: 183 PEQ 185


>gi|227431752|ref|ZP_03913779.1| ATP-dependent Clp protease proteolytic subunit [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
 gi|227352435|gb|EEJ42634.1| ATP-dependent Clp protease proteolytic subunit [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
          Length = 235

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 70/131 (53%), Gaps = 4/131 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK-GMRFALPNA 133
           I+L INS GG V  G+AIY+ ++  K  ++ +  G AAS+ S++  AG+   MR     +
Sbjct: 50  INLSINSGGGSVFDGIAIYNMLKSHKATVNVYIEGLAASIASVIAMAGDTITMR---SGS 106

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            I++H P     G A ++ + A  + K    + +IY +  G + +++   ++ +  +SA 
Sbjct: 107 MIMVHMPWTLSQGNAEEMRKTADTLEKTGDSIVDIYSERTGISSDDIRNIMNDETWLSAE 166

Query: 194 EACDWGVVDKV 204
           EA + G   K+
Sbjct: 167 EAVEQGWATKL 177


>gi|57234158|ref|YP_181801.1| ATP-dependent Clp protease, proteolytic subunit ClpP, putative
           [Dehalococcoides ethenogenes 195]
 gi|57224606|gb|AAW39663.1| ATP-dependent Clp protease, proteolytic subunit ClpP, putative
           [Dehalococcoides ethenogenes 195]
          Length = 242

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 4/166 (2%)

Query: 42  ERIVFVTGQIEDH--MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           +R +++ G+I D       +  QL   E  +    I+L+INSPGG V A   IY+ +   
Sbjct: 20  DRTLYLDGEISDETWFGDEVTPQLFKDELSSGDGNITLWINSPGGDVFAAAQIYNMLMDY 79

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
              ++      AAS  S++  AG K      P A +++H P+    G   ++++    + 
Sbjct: 80  PHDVTVKIDALAASAASVIAMAGTKVCMS--PVAMMMIHNPATIAIGDTEEMQKAIDMLN 137

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           ++K  +   Y    G +  ++ + +D +  M+A EA   G  D++L
Sbjct: 138 EVKESIMNAYEIKSGLSRHKISQLMDAETWMNAKEAVKLGFADEIL 183


>gi|73852602|ref|YP_293886.1| putative ATP-dependent protease proteolytic subunit [Emiliania
           huxleyi virus 86]
 gi|72415318|emb|CAI65555.1| putative ATP-dependent protease proteolytic subunit [Emiliania
           huxleyi virus 86]
          Length = 238

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 71/131 (54%), Gaps = 2/131 (1%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           +SLYI+S GG + AG + +  ++    P+ T   G  AS  + LL AG    R+ +P++ 
Sbjct: 105 VSLYIHSCGGDLFAGFSAFSLIRRNVIPVVTIADGYVASAATFLLLAGS--YRYIVPSSH 162

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           +L+HQ S G  G+  +IE   ++  +I  R++ +Y +        ++K L  +  ++  +
Sbjct: 163 VLIHQLSTGGYGKFQEIEDDYKNCKRIMERMHALYKEETWLPSAILKKLLKSELDLTDDK 222

Query: 195 ACDWGVVDKVL 205
              +G+V+++L
Sbjct: 223 CVKYGIVNELL 233


>gi|229828941|ref|ZP_04455010.1| hypothetical protein GCWU000342_01026 [Shuttleworthia satelles DSM
           14600]
 gi|229792104|gb|EEP28218.1| hypothetical protein GCWU000342_01026 [Shuttleworthia satelles DSM
           14600]
          Length = 224

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 72/137 (52%), Gaps = 5/137 (3%)

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           E   +++ + INS GG V A   IY  +Q  K  +    +G AAS  S++  AG+  +  
Sbjct: 47  EASGEKVDIDINSAGGNVFAASEIYAAIQGYKGDVKIHVVGLAASAASMIACAGKSDI-- 104

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVK-IKRRLNEIYVKNCGKTYEEVEKTLDRD 187
               A++++H  S   +G   D+  HA +++K   R + E YV   G + ++    +D +
Sbjct: 105 -TRTAQMMVHNVSAYTAGDYRDM-NHASEVLKQANRAIAEAYVAKSGMSEKDALDLMDAE 162

Query: 188 HIMSASEACDWGVVDKV 204
             ++A +A D+G++D++
Sbjct: 163 TWITAQDAVDYGLIDEI 179


>gi|153814261|ref|ZP_01966929.1| hypothetical protein RUMTOR_00470 [Ruminococcus torques ATCC 27756]
 gi|145848657|gb|EDK25575.1| hypothetical protein RUMTOR_00470 [Ruminococcus torques ATCC 27756]
          Length = 268

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 84/177 (47%), Gaps = 4/177 (2%)

Query: 42  ERIVFVTGQIEDHM--ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           ER +F+ G I D       +  QL   E       I+++INSPGG V A   IY+ ++  
Sbjct: 20  ERTLFLNGMISDETWYGDEVTPQLFKDELNAGNGNITVWINSPGGDVFAAAQIYNMLRDY 79

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
           K  ++    G AAS  S++  AG+       P A +++H P+    G+A D+++    + 
Sbjct: 80  KGSVTVKIDGIAASAASVIAMAGD--TVCVSPVAMMMIHNPATMAMGEAKDMQKAIAMLN 137

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           ++K  +   Y    G T   +   +D +   +A +A + G  DK+L    + E+K K
Sbjct: 138 EVKESILNAYEFKTGLTRARLSHMMDDETWFNAKKAVELGFADKILFDSDEDEKKKK 194


>gi|284992263|ref|YP_003410817.1| peptidase S14 ClpP [Geodermatophilus obscurus DSM 43160]
 gi|284065508|gb|ADB76446.1| peptidase S14 ClpP [Geodermatophilus obscurus DSM 43160]
          Length = 128

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 40/55 (72%), Gaps = 1/55 (1%)

Query: 35 IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
          ++  LL+ERIV +  Q++D +A  ICAQ+L L A++P +++ LYINSPGG V  G
Sbjct: 27 VFHCLLRERIVSLGSQVDDDIANQICAQML-LSADDPHRDVHLYINSPGGSVGRG 80


>gi|296503172|ref|YP_003664872.1| phage protein [Bacillus thuringiensis BMB171]
 gi|296324224|gb|ADH07152.1| phage protein [Bacillus thuringiensis BMB171]
          Length = 260

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 2/127 (1%)

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG V  G  IY  ++     +    +G AAS  S++  AG+K +R + P A+I++H
Sbjct: 49  INSPGGYVHEGSEIYTALKSYPGHVEVQIVGLAASAASVIAMAGDK-VRIS-PTAQIMIH 106

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
             S    G   D+E+ A+ +    R +   YV   GK+ EE+   +  +  M   +A + 
Sbjct: 107 NASMWNGGDHRDMEKAAEMLKTTDRAIVNAYVIKSGKSEEELLHMMAEETWMGPQQALEN 166

Query: 199 GVVDKVL 205
             VD+++
Sbjct: 167 NFVDEIM 173


>gi|32128420|ref|NP_858955.1| protease of the ClpP family [Xanthomonas phage Xp10]
 gi|31788483|gb|AAP58675.1| 8R [Xanthomonas phage Xp10]
          Length = 245

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 89/176 (50%), Gaps = 14/176 (7%)

Query: 31  RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGM 90
           R  +I+S + ++   F  G    H+A+       FL    P  +I++ I+SPGG + AG+
Sbjct: 41  RELNIFSVIGED--FFGEGTTSAHIAS-------FLNEIGP-GDITVNIDSPGGDMFAGL 90

Query: 91  AIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK-GMRFALPNARILLHQPSGGFSGQAS 149
           AIY+ +   K  ++   +G+AAS  S++  AG++  M    P+A I++H       G + 
Sbjct: 91  AIYNLLLAHKGRVTVNVIGRAASAASVIAMAGDQINMH---PSAFIMIHNCHLVVGGNSK 147

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           ++   ++ +      + +IYV   G + + + + +D +  MSA E+   G  D ++
Sbjct: 148 ELAEVSEMMKPFDSAMADIYVARTGMSKDTIVQMMDAETWMSAEESVKLGFADSIV 203


>gi|257088339|ref|ZP_05582700.1| peptidase S14 [Enterococcus faecalis D6]
 gi|256996369|gb|EEU83671.1| peptidase S14 [Enterococcus faecalis D6]
          Length = 250

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 4/167 (2%)

Query: 40  LKERIVFVTGQIED--HMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97
           + +R +++ GQI +       +  QL   E  + +  I+++INSPGG   A   IY+ ++
Sbjct: 22  ISDRTLYLNGQIAEVSWFDDDVTPQLFKDELMSGEGNITVWINSPGGDCVAAAQIYNMLK 81

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
                ++    G AAS  S++  AG+K +    P A +++H PS    G   D+++    
Sbjct: 82  EYSGDVTIKIDGLAASAASVIAMAGDKVVMS--PVAMMMIHNPSTVAFGDRVDMQKAMAM 139

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           + ++K  +   Y    G +  ++   +D +  M A  A D G  D V
Sbjct: 140 LDEVKESIINAYEIKTGMSRTKLAHMMDAETWMDARSAVDLGFADDV 186


>gi|300764715|ref|ZP_07074706.1| hypothetical protein LMHG_11061 [Listeria monocytogenes FSL N1-017]
 gi|300514601|gb|EFK41657.1| hypothetical protein LMHG_11061 [Listeria monocytogenes FSL N1-017]
          Length = 257

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 4/167 (2%)

Query: 40  LKERIVFVTGQIED--HMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97
           + +R +++ GQI +       I  QL   E  +    I+++INSPGG   A   IY+ ++
Sbjct: 29  ISDRTLYLNGQIAEVSWFDDDITPQLFKDELMSGDGNITVWINSPGGDCVAAAQIYNMLK 88

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
                ++    G AAS  S++  AG+K +    P A +++H PS    G   D+++    
Sbjct: 89  EYSGDVTIKIDGLAASAASVIAMAGDKVVMS--PVAMMMIHNPSTVAFGDRVDMQKAMAM 146

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           + ++K  +   Y    G +  ++   +D +  M A  A D G  D V
Sbjct: 147 LDEVKESIINAYEIKTGMSRTKLAHMMDAETWMDARSAVDLGFADDV 193


>gi|326795110|ref|YP_004312930.1| peptidase S14 ClpP [Marinomonas mediterranea MMB-1]
 gi|326545874|gb|ADZ91094.1| peptidase S14 ClpP [Marinomonas mediterranea MMB-1]
          Length = 342

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 68/134 (50%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           EI + + +PGG    G+AI + ++  K  +    + +A+S GS +      G   A P +
Sbjct: 55  EIRVSLATPGGNFFDGLAIANFLKGHKAEVIIEILSEASSAGSAIAMGASAGKLRAYPAS 114

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H P  G  G A+D    A  +  +K  L  +Y +  G     + + LD++ +M+A 
Sbjct: 115 FMMIHNPLTGMQGNANDFRAMADKLDILKSGLLRLYAERTGIEGATLWEMLDQETLMTAE 174

Query: 194 EACDWGVVDKVLMS 207
           EA   G VD+++++
Sbjct: 175 EAVLKGFVDEIIVT 188


>gi|167630981|ref|YP_001681480.1| peptidase s14, clpp [Heliobacterium modesticaldum Ice1]
 gi|167593721|gb|ABZ85469.1| peptidase s14, clpp [Heliobacterium modesticaldum Ice1]
          Length = 237

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 81/167 (48%), Gaps = 4/167 (2%)

Query: 41  KERIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           +ER +++ G I  E      +  +L   E  +   +I+++INSPGG V A   IY+ +  
Sbjct: 13  EERTLYLNGPIAEETWWGDEVTPKLFKDELLSGSGDITVWINSPGGDVFAAAQIYNMLMD 72

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
               ++    G AAS  S++  AG  G  +  P + +++H PS    G + ++ R    +
Sbjct: 73  YSGNVTVKIDGLAASAASVIAMAG--GDVYMSPVSMLMIHNPSTIAIGDSEEMLRAKALL 130

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            ++K  +   Y    G +  ++   +D +  M+A +A + G  DK+L
Sbjct: 131 DEVKESIINAYELKSGLSRAKLSHLMDAETWMNAKKAVELGFADKIL 177


>gi|269102625|ref|ZP_06155322.1| ATP-dependent protease [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268162523|gb|EEZ41019.1| ATP-dependent protease [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 658

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 74/134 (55%), Gaps = 4/134 (2%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP- 131
           +++   I S GG V  G+A+Y+ ++  K        G  AS+ S  L A ++     +P 
Sbjct: 48  QDVHFRIQSYGGSVYEGLAMYNAIKAHKGKTVGIVDGLVASISSYFLMACDE---VHMPE 104

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           NA++++H P+ G  G   ++E     +   K+ + E YV+  G++ ++V + + ++   +
Sbjct: 105 NAKLMIHDPAIGAWGGEDELESALTQLKNAKQTIAEAYVERSGQSLDDVLEAMAKETWFT 164

Query: 192 ASEACDWGVVDKVL 205
           AS+A ++G++D+V+
Sbjct: 165 ASQALEFGLIDQVI 178


>gi|213621307|ref|ZP_03374090.1| hypothetical protein SentesTyp_28867 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 37

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/37 (62%), Positives = 31/37 (83%)

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++
Sbjct: 1   AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE 37


>gi|187933709|ref|YP_001885481.1| Clp protease [Clostridium botulinum B str. Eklund 17B]
 gi|187721862|gb|ACD23083.1| Clp protease family protein [Clostridium botulinum B str. Eklund
           17B]
          Length = 232

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 87/182 (47%), Gaps = 26/182 (14%)

Query: 43  RIVFVTGQIEDHM-------ATL---ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI 92
           +++ + GQIE HM       AT    I  QL+ LE  +  K I + +N+ GG V AG+AI
Sbjct: 42  QVLSIIGQIEGHMVLPPQTKATRYEHIIPQLIDLEQNDNVKGILIVLNTVGGDVEAGLAI 101

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH--QPSGGFSGQASD 150
            + ++ +  P  +   G   S+G  L +A +    F  P+A +++H  + +G   G A  
Sbjct: 102 AEMIRSMSKPTVSIVTGGGHSIGVPLATASD--YSFITPSATMIVHPVRMNGFIIGVAQT 159

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDHIMSASEACDWGVVD 202
            E       K++ R+NE   +      EE+EK +        D   I+   +A D G++D
Sbjct: 160 FEYFK----KMQERINEFITRTSHIKEEELEKFMLQTNELLNDVGTILIGKQAVDCGLID 215

Query: 203 KV 204
           +V
Sbjct: 216 EV 217


>gi|315170930|gb|EFU14947.1| Clp protease [Enterococcus faecalis TX1342]
          Length = 247

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 68/132 (51%), Gaps = 2/132 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           ++I++ +NSPGG V  G+ IY+ ++     ++    G AAS  + +LSA ++ +      
Sbjct: 53  EDITIKLNSPGGDVFEGVEIYNYLKDHPSKVTVEVTGVAASAATFILSAADEAIMNV--G 110

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
             +++H+ S    G   DI++    +  I   +  IY +  G+T +++E  +  +   +A
Sbjct: 111 TSVMIHEASTFTWGNKQDIQKTLNALETIDDSILSIYSQKTGQTTDQLETWMKEEKWFTA 170

Query: 193 SEACDWGVVDKV 204
            EA ++G   +V
Sbjct: 171 EEAVEYGFATEV 182


>gi|221483965|gb|EEE22269.1| hypothetical protein TGGT1_017590 [Toxoplasma gondii GT1]
          Length = 387

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 63/93 (67%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +++NS GG + AG+A++D +  ++ P+ T  +G AAS  SLLL+AG  G RFA+  + +L
Sbjct: 217 IFVNSAGGSLNAGLALFDALSTLQAPVYTVNLGLAASAASLLLAAGSGGRRFAVEQSSVL 276

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIY 169
           LHQP+G  +G+ S+++   +++ K+  ++  +Y
Sbjct: 277 LHQPAGSLAGRDSELQDERREVEKLHEKVVRLY 309


>gi|86136200|ref|ZP_01054779.1| putative protease/scaffold protein [Roseobacter sp. MED193]
 gi|85827074|gb|EAQ47270.1| putative protease/scaffold protein [Roseobacter sp. MED193]
          Length = 326

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 69/131 (52%), Gaps = 4/131 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I L +NSPGG V   +AIY+ ++     I+ +  G AAS  S +  AG+      +P NA
Sbjct: 45  IDLRLNSPGGSVFDAVAIYNALKRHAGEITVWIDGIAASAASYIAMAGDA---IVMPENA 101

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H PSG   G A D+   A+ + K+K  L + Y    GK  +E+   +  +  + A 
Sbjct: 102 FLMIHDPSGLVMGTAEDMRATAEALDKVKGSLIQGYAGKSGKPDDEIAALMAAETWLDAK 161

Query: 194 EACDWGVVDKV 204
           +A D G +D++
Sbjct: 162 DALDLGFIDRI 172


>gi|294780291|ref|ZP_06745660.1| Clp protease [Enterococcus faecalis PC1.1]
 gi|294452555|gb|EFG20988.1| Clp protease [Enterococcus faecalis PC1.1]
          Length = 239

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 67/131 (51%), Gaps = 2/131 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I++ +NSPGG V  G+ IY+ ++     ++    G AAS  + +LSA ++ +       
Sbjct: 54  DITIKLNSPGGDVFEGVEIYNYLKDHPSKVTVEVTGVAASAATFILSAADEAIMNV--GT 111

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H+ S    G   DI++    +  I   +  IY +  G+T +++E  +  +   +A 
Sbjct: 112 SVMIHEASTFTWGNKQDIQKTLNALETIDDSILSIYSQKTGQTTDQLETWMKEEKWFTAE 171

Query: 194 EACDWGVVDKV 204
           EA ++G   +V
Sbjct: 172 EAVEYGFATEV 182


>gi|315165627|gb|EFU09644.1| Clp protease [Enterococcus faecalis TX1302]
          Length = 239

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 67/131 (51%), Gaps = 2/131 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I++ +NSPGG V  G+ IY+ ++     ++    G AAS  + +LSA ++ +       
Sbjct: 54  DITIKLNSPGGDVFEGVEIYNYLKDHPSKVTVEVTGVAASAATFILSAADEAIMNV--GT 111

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H+ S    G   DI++    +  I   +  IY +  G+T +++E  +  +   +A 
Sbjct: 112 SVMIHEASTFTWGNKQDIQKTLNALETIDDSILSIYSQKTGQTTDQLETWMKEEKWFTAE 171

Query: 194 EACDWGVVDKV 204
           EA ++G   +V
Sbjct: 172 EAVEYGFATEV 182


>gi|283481346|emb|CAZ69462.1| putative ATP-dependent protease proteolytic subunit [Emiliania
           huxleyi virus 99B1]
          Length = 238

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 73/135 (54%), Gaps = 2/135 (1%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           +SLYI+S GG + AG + +  ++    P+ T   G  AS  + +L AG    R+ +P++ 
Sbjct: 105 VSLYIHSCGGDLFAGFSAFSLIRRNVIPVVTIADGYVASAATFMLLAGS--YRYIVPSSH 162

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           +L+HQ S G  G+  +IE   ++  +I  R++ +Y +        ++K L  +  ++  +
Sbjct: 163 VLIHQLSTGGYGKFQEIEDDYKNCKRIMERMHALYKEETWLPPAILKKLLKSELDLTDDK 222

Query: 195 ACDWGVVDKVLMSRI 209
              +G+V+++L + +
Sbjct: 223 CVKYGIVNELLPTEL 237


>gi|229076635|ref|ZP_04209575.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock4-18]
 gi|228706461|gb|EEL58694.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock4-18]
          Length = 236

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 3/140 (2%)

Query: 67  EAENPQ-KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           E EN   +E+ + INSPGG V  G  IY  ++     +    +G AAS  S +  A  K 
Sbjct: 12  ELENANGEELVVSINSPGGYVNEGSEIYTALKNYPGHVEVQIVGLAASAASFIAMAANK- 70

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
           +R + P A+I++H  S    G   D+E+ A+ +    R +   YV   GK+ EE+   + 
Sbjct: 71  VRIS-PTAQIMIHNASMWNGGDHRDMEKAAEMLKITDRAIVNAYVIKSGKSEEELLNMMA 129

Query: 186 RDHIMSASEACDWGVVDKVL 205
            +  M   +A +   VD+++
Sbjct: 130 EETWMGPQQALENNFVDEIM 149


>gi|325914991|ref|ZP_08177323.1| protease subunit of ATP-dependent protease [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325538884|gb|EGD10548.1| protease subunit of ATP-dependent protease [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 233

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 7/159 (4%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAEN--PQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           V + G I D + +   + L   E  N      I + INS GGVV  G+AIY+ +      
Sbjct: 29  VMIYGTIGDSLWSESVSALELAEQINQITASTIHVRINSGGGVVADGIAIYNALSQHAAH 88

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIK 162
              F  GQAAS+ SL+  AG + + +A  ++ +++H P    +G AS   ++A  +    
Sbjct: 89  KVVFVDGQAASIASLIAMAGNEVVMYA--SSLLMVHAPHTIAAGNASSFRQYATALDAHA 146

Query: 163 RRLNEIYVKNCGKTYEEVEKTLD--RDHIMSASEACDWG 199
             + E Y    GK   EVE+ L    DH  + ++A ++G
Sbjct: 147 GAMLEAYATKTGKR-SEVEQLLTDGADHWYTGAQAVEFG 184


>gi|227519561|ref|ZP_03949610.1| Clp protease [Enterococcus faecalis TX0104]
 gi|312902470|ref|ZP_07761676.1| Clp protease [Enterococcus faecalis TX0635]
 gi|227073010|gb|EEI10973.1| Clp protease [Enterococcus faecalis TX0104]
 gi|310634140|gb|EFQ17423.1| Clp protease [Enterococcus faecalis TX0635]
 gi|315579722|gb|EFU91913.1| Clp protease [Enterococcus faecalis TX0630]
          Length = 239

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 67/131 (51%), Gaps = 2/131 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I++ +NSPGG V  G+ IY+ ++     ++    G AAS  + +LSA ++ +       
Sbjct: 54  DITIKLNSPGGDVFEGVEIYNYLKDHPSKVTVEVTGVAASAATFILSAADEAIMNV--GT 111

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H+ S    G   DI++    +  I   +  IY +  G+T +++E  +  +   +A 
Sbjct: 112 SVMIHEASTFTWGNKQDIQKTLNALETIDDSILSIYSQKTGQTTDQLETWMREEKWFTAE 171

Query: 194 EACDWGVVDKV 204
           EA ++G   +V
Sbjct: 172 EAVEYGFATEV 182


>gi|110804048|ref|YP_699942.1| putative endopeptidase [Clostridium phage phiSM101]
 gi|110684549|gb|ABG87916.1| putative endopeptidase [Clostridium phage phiSM101]
          Length = 243

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 67/133 (50%), Gaps = 2/133 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           +++ + INS GG V  G  IY  ++     +    +G AAS  S++   G+K ++ + P 
Sbjct: 43  EQLEVIINSNGGYVDEGSEIYTLLKDYNGEVVIKIVGMAASAASVIAMGGDK-VKIS-PT 100

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
            RI++H  +GG  G    +E  A+ +      +   Y    G + EE+   ++++  M+A
Sbjct: 101 GRIMIHNAAGGVCGDYRQMEHGAEVLKDCNEAIANAYALKTGMSKEELLDLMNKETFMNA 160

Query: 193 SEACDWGVVDKVL 205
            +A   G VD+++
Sbjct: 161 QKAKQLGFVDEIM 173


>gi|257090835|ref|ZP_05585196.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|256999647|gb|EEU86167.1| conserved hypothetical protein [Enterococcus faecalis CH188]
          Length = 243

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 67/131 (51%), Gaps = 2/131 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I++ +NSPGG V  G+ IY+ ++     ++    G AAS  + +LSA ++ +       
Sbjct: 58  DITIKLNSPGGDVFEGVEIYNYLKDHPSKVTVEVTGVAASAATFILSAADEAIMNV--GT 115

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H+ S    G   DI++    +  I   +  IY +  G+T +++E  +  +   +A 
Sbjct: 116 SVMIHEASTFTWGNKQDIQKTLNALETIDDSILSIYSQKTGQTTDQLETWMREEKWFTAE 175

Query: 194 EACDWGVVDKV 204
           EA ++G   +V
Sbjct: 176 EAVEYGFATEV 186


>gi|315033068|gb|EFT45000.1| Clp protease [Enterococcus faecalis TX0017]
          Length = 239

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 67/131 (51%), Gaps = 2/131 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I++ +NSPGG V  G+ IY+ ++     ++    G AAS  + +LSA ++ +       
Sbjct: 54  DITIKLNSPGGDVFEGVEIYNYLKDHPSKVTVEVTGVAASAATFILSAADEAIMNV--GT 111

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H+ S    G   DI++    +  I   +  IY +  G+T +++E  +  +   +A 
Sbjct: 112 SVMIHEASTFTWGNKQDIQKTLNALETIDDSILSIYSQKTGQTTDQLETWMREEKWFTAE 171

Query: 194 EACDWGVVDKV 204
           EA ++G   +V
Sbjct: 172 EAVEYGFATEV 182


>gi|326941533|gb|AEA17429.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 258

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 68/133 (51%), Gaps = 2/133 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           +++ + INSPGG V  G  IY  ++     +    +G AAS  S++  AG+K +R + P 
Sbjct: 43  EDLIVSINSPGGYVDEGSEIYTALKNYPGHVEVQIVGLAASAASVIAMAGDK-VRIS-PT 100

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A+I++H  +    G   D+E+ A+ +    R +   YV   GK+ EE+   +  +  M  
Sbjct: 101 AKIMIHNAAKWHGGDHRDMEKAAEMLKITDRAIVNAYVIKSGKSEEELLNMMAEETWMGP 160

Query: 193 SEACDWGVVDKVL 205
            +A +    D+++
Sbjct: 161 QQALENNFADEIM 173


>gi|228922537|ref|ZP_04085838.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228837132|gb|EEM82472.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 233

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 65/127 (51%), Gaps = 2/127 (1%)

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG V  G  IY  ++     +    +G AAS  S++  AG+K +R + P A+I++H
Sbjct: 25  INSPGGYVHEGSEIYTALKNYPGNVEVQIVGLAASAASVIAMAGDK-VRIS-PTAQIMIH 82

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
             S    G   D+E+ A+ +    R +   YV   GK+ +E+   +  +  M   +A + 
Sbjct: 83  NASMWNGGDHRDMEKAAEMLKTTDRAIVNAYVIKSGKSEKELLNMMAEETWMGPQQALEN 142

Query: 199 GVVDKVL 205
             VD+++
Sbjct: 143 NFVDEIM 149


>gi|289608536|emb|CBI60575.1| unnamed protein product [Sordaria macrospora]
          Length = 99

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 55/90 (61%), Gaps = 9/90 (10%)

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTY-------EEVEKTLDRDH 188
           ++HQP GG  GQASDI  +A  I +I+ ++N+I   +  K++         +   ++RD 
Sbjct: 1   MVHQPLGGTRGQASDILIYANQIQRIREQINKIVQSHINKSFGFEKYDLAAISDMMERDK 60

Query: 189 IMSASEACDWGVVDKVLMSRI--DIEEKSK 216
            ++A EA + GVVD++L  R+  ++E+K+K
Sbjct: 61  YLTAEEAVELGVVDQILDRRVKDEVEKKTK 90


>gi|126011097|ref|YP_001039922.1| head maturation protease [Streptococcus phage phi3396]
 gi|124389366|gb|ABN10808.1| head maturation protease [Streptococcus phage phi3396]
          Length = 268

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 70/137 (51%), Gaps = 2/137 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           ++I + +NS GG V  G  IY  ++     +     G AAS+ S+++ AG+  +  A P 
Sbjct: 42  EDIQVRLNSGGGEVFVGSEIYSALKDYPGNVEVVITGLAASIASIIMLAGD--VIKASPM 99

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A+I++H  S G  G    ++  ++ +      L  +Y +  GK   E+ + LD +   +A
Sbjct: 100 AQIMIHNASWGSYGDYRQLKHDSEVVENASISLAGMYARKTGKQETEIRELLDAETWFTA 159

Query: 193 SEACDWGVVDKVLMSRI 209
           + A + G++D +L + +
Sbjct: 160 NSAKEIGLIDDILYNEM 176


>gi|229110059|ref|ZP_04239636.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock1-15]
 gi|228673412|gb|EEL28679.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock1-15]
          Length = 234

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 68/133 (51%), Gaps = 2/133 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           +++ + INSPGG V  G  IY  ++     +    +G AAS  S++  AG+K +R + P 
Sbjct: 19  EDLIVSINSPGGYVDEGSEIYTALKNYPGHVEVQIVGLAASAASVIAMAGDK-VRIS-PT 76

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A+I++H  +    G   D+E+ A+ +    R +   YV   GK+ EE+   +  +  M  
Sbjct: 77  AKIMIHNAAKWHGGDHRDMEKAAEMLKITDRAIVNAYVIKSGKSEEELLNMMAEETWMGP 136

Query: 193 SEACDWGVVDKVL 205
            +A +    D+++
Sbjct: 137 QQALENNFADEIM 149


>gi|325914956|ref|ZP_08177288.1| protease subunit of ATP-dependent protease [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325538849|gb|EGD10513.1| protease subunit of ATP-dependent protease [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 728

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 7/159 (4%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAEN--PQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           V + G I D + +   + L   E  N      I + INS GGVV  G+AIY+ +      
Sbjct: 29  VMIYGTIGDSLWSESVSALELAEQINQITASTIHVRINSGGGVVADGIAIYNALSQHAAH 88

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIK 162
              F  GQAAS+ SL+  AG + + +A  ++ +++H P    +G AS   ++A  +    
Sbjct: 89  KVVFVDGQAASIASLIAMAGNEVVMYA--SSLLMVHAPHTIAAGNASSFRQYATALDAHA 146

Query: 163 RRLNEIYVKNCGKTYEEVEKTLD--RDHIMSASEACDWG 199
             + E Y    GK   EVE+ L    DH  + ++A ++G
Sbjct: 147 GAMLEAYATKTGKR-SEVEQLLTDGADHWYTGAQAVEFG 184


>gi|163790237|ref|ZP_02184670.1| hypothetical protein CAT7_04934 [Carnobacterium sp. AT7]
 gi|159874512|gb|EDP68583.1| hypothetical protein CAT7_04934 [Carnobacterium sp. AT7]
          Length = 246

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 77/156 (49%), Gaps = 2/156 (1%)

Query: 59  ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLL 118
           I A+L+    +    +I +Y+NS GG V  G+ IY+ ++     I+    G AAS  + +
Sbjct: 39  IDAKLVSDSLDGVTDDIVIYLNSTGGDVFQGIEIYNYLKNHSSHITVEVTGTAASAATFI 98

Query: 119 LSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYE 178
           ++  ++ +         ++H+ S    G  +D+++    +  I   +  IY +  G++ E
Sbjct: 99  VAGADEAIMN--TGTSFMIHEASSFAWGNKADLKKTLNALETIDESIIAIYTEKTGQSNE 156

Query: 179 EVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           ++   ++ +   +A EA  +G  +KV  ++ DI ++
Sbjct: 157 QLNDWMEEEKWFTAEEAVKYGFANKVKENKKDITDQ 192


>gi|331270735|ref|YP_004397329.1| caseinolytic protease (Clp) [Clostridium botulinum BKT015925]
 gi|329127698|gb|AEB77639.1| caseinolytic protease (Clp) [Clostridium botulinum BKT015925]
          Length = 258

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 93/185 (50%), Gaps = 6/185 (3%)

Query: 24  EQTNRGERSYDIY--SRLLKERIV-FVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           E TN  E S DIY   +++ E+ V + TG+ E+    +    +  L  E   KEI+L+IN
Sbjct: 20  ELTNETESSADIYLYGQIVDEKPVNWWTGK-EEEGEFIYPENIRKLVNEAGDKEINLHIN 78

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           S GG + A ++I++ ++  K  I+ +  G AAS  S++  A +K   F   N  +++H+ 
Sbjct: 79  STGGSIYASISIHNFLKQAKNKINVYIDGIAASGASIIAMAADK--IFMPENTTMMIHRA 136

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
           + G  G    + + A  + K    +   Y +       E++  ++ +  ++A+E    G+
Sbjct: 137 AVGVYGNVETLRKVANTLEKFDETVLNSYKERFVGEIGELKALIEDETYLTATECKSLGL 196

Query: 201 VDKVL 205
            D++L
Sbjct: 197 CDEIL 201


>gi|228942974|ref|ZP_04105481.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228976599|ref|ZP_04137044.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228980374|ref|ZP_04140684.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis Bt407]
 gi|228779194|gb|EEM27451.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis Bt407]
 gi|228783116|gb|EEM31250.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228816700|gb|EEM62818.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar berliner ATCC 10792]
          Length = 234

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 68/133 (51%), Gaps = 2/133 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           +++ + INSPGG V  G  IY  ++     +    +G AAS  S++  AG+K +R + P 
Sbjct: 19  EDLIVSINSPGGYVDEGSEIYTALKNYPGHVEVQIVGLAASAASVIAMAGDK-VRIS-PT 76

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A+I++H  +    G   D+E+ A+ +    R +   YV   GK+ EE+   +  +  M  
Sbjct: 77  AKIMIHNAAKWHGGDHRDMEKAAEMLKITDRAIVNAYVIKSGKSEEELLNMMAEETWMGP 136

Query: 193 SEACDWGVVDKVL 205
            +A +    D+++
Sbjct: 137 QQALENNFADEIM 149


>gi|229191943|ref|ZP_04318913.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           ATCC 10876]
 gi|228591494|gb|EEK49343.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           ATCC 10876]
          Length = 233

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 65/127 (51%), Gaps = 2/127 (1%)

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG V  G  IY  ++     +    +G AAS  S++  AG+K +R + P A+I++H
Sbjct: 25  INSPGGYVHEGSEIYTALKNYPGNVEVQIVGLAASAASVIAMAGDK-VRIS-PTAQIMIH 82

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
             S    G   D+E+ A+ +    R +   YV   GK+ +E+   +  +  M   +A + 
Sbjct: 83  NASMWNGGDHRDMEKAAEMLKTTDRAIVNAYVIKSGKSEKELLNMMAEETWMRPQQALEN 142

Query: 199 GVVDKVL 205
             VD+++
Sbjct: 143 NFVDEIM 149


>gi|228955763|ref|ZP_04117752.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228803918|gb|EEM50548.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
          Length = 234

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 68/133 (51%), Gaps = 2/133 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           +++ + INSPGG V  G  IY  ++     +    +G AAS  S++  AG+K +R + P 
Sbjct: 19  EDLIVSINSPGGYVDEGSEIYTALKNYPGHVEVQIVGLAASAASVIAMAGDK-VRIS-PT 76

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A+I++H  +    G   D+E+ A+ +    R +   YV   GK+ EE+   +  +  M  
Sbjct: 77  AKIMIHNAAKWHGGDHRDMEKAAEMLKITDRAIVNAYVIKSGKSEEELLNMMAEETWMGP 136

Query: 193 SEACDWGVVDKVL 205
            +A +    D+++
Sbjct: 137 QQALENNFADEIM 149


>gi|19745487|ref|NP_606623.1| hypothetical protein spyM18_0371 [Streptococcus pyogenes MGAS8232]
 gi|21910248|ref|NP_664516.1| hypothetical protein SpyM3_0712 [Streptococcus pyogenes MGAS315]
 gi|28876177|ref|NP_795404.1| head maturation protease [Streptococcus pyogenes phage 315.1]
 gi|28896052|ref|NP_802402.1| scaffolding protein [Streptococcus pyogenes SSI-1]
 gi|19747603|gb|AAL97122.1| hypothetical phage protein [Streptococcus pyogenes MGAS8232]
 gi|21904443|gb|AAM79319.1| conserved hypothetical protein - phage-associated [Streptococcus
           pyogenes phage 315.1]
 gi|28811302|dbj|BAC64235.1| putative scaffolding protein [Streptococcus pyogenes SSI-1]
          Length = 268

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 70/137 (51%), Gaps = 2/137 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           ++I + +NS GG V  G  IY  ++     +     G AAS+ S+++ AG+  +  A P 
Sbjct: 42  EDIQVRLNSGGGEVFVGSEIYSALKDYPGNVEVVITGLAASIASIIMLAGD--VIKASPM 99

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A+I++H  S G  G    ++  ++ +      L  +Y +  GK   E+ + LD +   +A
Sbjct: 100 AQIMIHNASWGSYGDYRQLKHDSEVVENASISLAGMYAQKTGKQETEIRELLDAETWFTA 159

Query: 193 SEACDWGVVDKVLMSRI 209
           + A + G++D +L + +
Sbjct: 160 NSAKEIGLIDDILYNEM 176


>gi|317501080|ref|ZP_07959286.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|316897467|gb|EFV19532.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
           bacterium 8_1_57FAA]
          Length = 242

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 77/166 (46%), Gaps = 4/166 (2%)

Query: 42  ERIVFVTGQIEDH--MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           +R +++ G+I D       +  +L   E       I+L+INSPGG V A   IY+ +   
Sbjct: 20  DRTLYLDGEISDETWFGDEVTPKLFSDELHAGDGNITLWINSPGGDVFAAAQIYNMLMDY 79

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
              ++      AAS  S++  AG K      P A +++H P+    G   ++++    + 
Sbjct: 80  PHDVTVKIDALAASAASVIAMAGTKVCMS--PVAMMMVHNPATIAIGDTEEMQKAIDMLN 137

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           ++K  +   Y    G +  ++ + +D +  M+A EA   G  D++L
Sbjct: 138 EVKESIMNAYEIKSGLSRHKISQLMDAETWMNAKEAVKLGFADEIL 183


>gi|282921759|ref|ZP_06329476.1| phage protease [Staphylococcus aureus A9765]
 gi|282594021|gb|EFB99010.1| phage protease [Staphylococcus aureus A9765]
          Length = 257

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 72/135 (53%), Gaps = 7/135 (5%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           EI ++INS GG V  G AIY+ ++     I+ +    AAS+ S++  +G+    F   N+
Sbjct: 53  EIDVHINSSGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGD--TIFMHKNS 110

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYV---KNCGKTYEEVEKTLDRDHIM 190
            +++H       G A ++ + A  + K     N  Y+   KN  +  E++++ LD +  +
Sbjct: 111 FLMIHNSWVMTVGNAEELRKTADLLDKTDAVSNSAYLDKAKNLDQ--EQLKQMLDAETWL 168

Query: 191 SASEACDWGVVDKVL 205
           +A EA  +G++D+VL
Sbjct: 169 TAEEALSFGLIDEVL 183


>gi|134300444|ref|YP_001113940.1| peptidase S14, ClpP [Desulfotomaculum reducens MI-1]
 gi|134053144|gb|ABO51115.1| peptidase S14, ClpP [Desulfotomaculum reducens MI-1]
          Length = 258

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 76/144 (52%), Gaps = 6/144 (4%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP- 131
           KEI ++INS GG V  G AIY  ++      + +  G A S+ S++  AG+   R  +P 
Sbjct: 57  KEIKIFINSYGGSVFEGTAIYSQLRRHPAQKTVYIDGFACSVASVIAMAGD---RVIMPK 113

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYV-KNCGK-TYEEVEKTLDRDHI 189
           N  +++H      +G A+ + + A D+  I     + Y+ K+ GK T E++ + LD +  
Sbjct: 114 NTMMMIHNAWNIVAGNATQLRKAADDLDTIMAGNRQSYLQKSNGKITEEKLIELLDAETW 173

Query: 190 MSASEACDWGVVDKVLMSRIDIEE 213
           ++A +  ++G  D++L    D+ E
Sbjct: 174 LTAEQCIEYGFADELLEKDADLTE 197


>gi|297619361|ref|YP_003707466.1| peptidase S14 ClpP [Methanococcus voltae A3]
 gi|297378338|gb|ADI36493.1| peptidase S14 ClpP [Methanococcus voltae A3]
          Length = 190

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 69/132 (52%), Gaps = 6/132 (4%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L I+SPGG VTAG++ Y+ ++ I   ++T   G   S+G ++  AG++  R+A P +R L
Sbjct: 46  LLISSPGGDVTAGLSAYNYLKGIPAYVTTHNFGSVDSIGIVIFCAGQE--RYASPQSRFL 103

Query: 137 LHQPSGGFSGQAS----DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           +H     FS  ++    DIE   + +      ++++   N      ++++ +     ++ 
Sbjct: 104 IHDVRSVFSSTSNLGEKDIEERLKSLKVDMENISKVISSNSNLEASQIQEFMLERTTLNP 163

Query: 193 SEACDWGVVDKV 204
            EA + G++ ++
Sbjct: 164 EEAVNMGLITEI 175


>gi|330989637|gb|EGH87740.1| peptidase S14 ClpP [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 280

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 66/135 (48%), Gaps = 2/135 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K  ++YINSPGG +  G+AIY+ ++    PI+T  +G AAS  S++  AG K  R    +
Sbjct: 67  KPATVYINSPGGDMFEGLAIYNRLREHSQPITTKVLGLAASAASVIYMAGAK--REVASS 124

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
             +++H       G   D+   A  + +    + ++Y +  G+   ++ + +D +  +  
Sbjct: 125 GFLMIHNCWTLAVGNRHDLRDVANTMEEFDAAMADLYAEGSGQAVADIAEMMDDETFIRG 184

Query: 193 SEACDWGVVDKVLMS 207
             A + G    VL S
Sbjct: 185 RRAVELGFATAVLSS 199


>gi|258427137|ref|ZP_05688059.1| scaffolding protease [Staphylococcus aureus A9299]
 gi|257849915|gb|EEV73874.1| scaffolding protease [Staphylococcus aureus A9299]
          Length = 257

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 72/135 (53%), Gaps = 7/135 (5%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           EI ++INS GG V  G AIY+ ++     I+ +    AAS+ S++  +G+    F   N+
Sbjct: 53  EIDVHINSSGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGD--TIFKPKNS 110

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYV---KNCGKTYEEVEKTLDRDHIM 190
            +++H       G A ++ + A  + K     N  Y+   KN  +  E++++ LD +  +
Sbjct: 111 FLMIHNSWVMTVGNAEELRKTADLLDKTDAVSNSAYLDKAKNLDQ--EQLKQMLDAETWL 168

Query: 191 SASEACDWGVVDKVL 205
           +A EA  +G++D+VL
Sbjct: 169 TAEEALSFGLIDEVL 183


>gi|237803723|ref|ZP_04591308.1| peptidase S14 ClpP [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331025705|gb|EGI05761.1| peptidase S14 ClpP [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 280

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 66/135 (48%), Gaps = 2/135 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K  ++YINSPGG +  G+AIY+ ++    PI+T  +G AAS  S++  AG K  R    +
Sbjct: 67  KPATVYINSPGGDMFEGLAIYNRLREHSQPITTKVLGLAASAASVIYMAGAK--REVASS 124

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
             +++H       G   D+   A  + +    + ++Y +  G+   ++ + +D +  +  
Sbjct: 125 GFLMIHNCWTLAVGNRHDLRDVANTMEEFDAAMADLYAEGSGQAVADIAEMMDDETFIRG 184

Query: 193 SEACDWGVVDKVLMS 207
             A + G    VL S
Sbjct: 185 RRAVELGFATAVLSS 199


>gi|71276662|ref|ZP_00652933.1| Peptidase S14, ClpP [Xylella fastidiosa Dixon]
 gi|71899159|ref|ZP_00681322.1| Peptidase S14, ClpP [Xylella fastidiosa Ann-1]
 gi|71162534|gb|EAO12265.1| Peptidase S14, ClpP [Xylella fastidiosa Dixon]
 gi|71731017|gb|EAO33085.1| Peptidase S14, ClpP [Xylella fastidiosa Ann-1]
          Length = 771

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 7/134 (5%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I + INS GGVV+ G+AIY+ +      I     G AAS+ SL+  AG    R   PN+ 
Sbjct: 77  IHVRINSNGGVVSDGLAIYNALTAHPATIHVTIDGVAASIASLIAQAGT--TRRVYPNSL 134

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTY-EEVEKTLD--RDHIMS 191
           +++H P  G  G A D+   A  +  +   ++  Y    G T+ E + + L+   DH ++
Sbjct: 135 MMIHGPQTGGWGFAEDLRHTAAMLDTMAAAMHTAYTT--GATHPEAIRRMLNDGHDHWLT 192

Query: 192 ASEACDWGVVDKVL 205
           A +    G+ D ++
Sbjct: 193 AQDMIAAGLADTII 206


>gi|154504815|ref|ZP_02041553.1| hypothetical protein RUMGNA_02325 [Ruminococcus gnavus ATCC 29149]
 gi|153794698|gb|EDN77118.1| hypothetical protein RUMGNA_02325 [Ruminococcus gnavus ATCC 29149]
          Length = 268

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 4/166 (2%)

Query: 42  ERIVFVTGQIEDHM--ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           ER +F+ G I D       +  QL   E       I+++INSPGG V A   IY+ ++  
Sbjct: 20  ERTLFLNGMISDETWYGDEVTPQLFKDELNAGNGNITVWINSPGGDVFAAAQIYNMLRDY 79

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
           K  ++    G AAS  S++  AG+       P A +++H P+    G+A D+++    + 
Sbjct: 80  KGSVTVKIDGIAASAASVIAMAGDT--VCVSPVAMMMIHNPATMAMGEAKDMQKAIAMLN 137

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           ++K  +   Y    G T   +   +D +   +A +A + G  DK+L
Sbjct: 138 EVKESILNAYEFKTGLTRARLSHMMDDETWFNAKKAVELGFADKIL 183


>gi|218898920|ref|YP_002447331.1| Clp protease [Bacillus cereus G9842]
 gi|218544430|gb|ACK96824.1| Clp protease [Bacillus cereus G9842]
          Length = 247

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 4/133 (3%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP- 131
           ++I ++INS GG    G+AI + ++     I     G AAS  S++  AG+   R  +P 
Sbjct: 57  EKIHVHINSGGGSAFDGVAICNQLKQHSAEIIVHIDGWAASAASVIAMAGD---RIIMPS 113

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N  +++HQ S    G A   E+ A+D+ KI   L   Y K    T EE+++ L  +  ++
Sbjct: 114 NTMMMIHQASTFEYGNADLFEKTARDLRKIDSALAGSYKKRFVGTDEELKQLLKDETWLT 173

Query: 192 ASEACDWGVVDKV 204
           A EA   G+ D++
Sbjct: 174 AEEAVALGLADEI 186


>gi|9633042|ref|NP_050150.1| ClpP-like protease [Lactobacillus phage phiadh]
 gi|5730299|emb|CAB52520.1| ClpP-like protease [Lactobacillus phage phiadh]
          Length = 242

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 4/133 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL-PN 132
           +++L INSPGG V AG  IY  ++  +  +     GQA S  S +  A +   R  + P 
Sbjct: 46  DVTLEINSPGGYVDAGSEIYTALKEYQGQVIAKITGQACSAASWIALAAD---RIEMSPT 102

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A++++H+ S    G + D+      +  + +   ++Y +  G   +EV + +     M+A
Sbjct: 103 AQMMIHRASTISIGNSDDLASDLNALNSLDKSFVDLYSQRTGLDAQEVYRLMCNTTWMNA 162

Query: 193 SEACDWGVVDKVL 205
            EA D G  D+++
Sbjct: 163 KEAVDKGFADEIM 175


>gi|160873909|ref|YP_001553225.1| peptidase S14 ClpP [Shewanella baltica OS195]
 gi|160859431|gb|ABX47965.1| peptidase S14 ClpP [Shewanella baltica OS195]
 gi|315266141|gb|ADT92994.1| peptidase S14 ClpP [Shewanella baltica OS678]
          Length = 668

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 8/133 (6%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM--GQAASMGSLLLSAGEKGMRFALP- 131
           I+  I+SPGG V  GMAIY+ ++    P    C   G AASM S++  A ++     +P 
Sbjct: 57  ITARIHSPGGDVFEGMAIYNMIK--GHPAHKVCYIDGLAASMASVIAMAFDE---VIMPE 111

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           NA +++H+P GG  G A D+ ++A  + K++  L   Y    G + +E+   L  +  ++
Sbjct: 112 NAMMMVHKPWGGTLGDAEDMRKYADLLDKVEGNLVSAYQHKTGLSEDELHALLAAETWLT 171

Query: 192 ASEACDWGVVDKV 204
             EA + G  + +
Sbjct: 172 GREAVEKGFANTL 184


>gi|242345576|ref|YP_002995462.1| hypothetical protein M102_gp05 [Streptococcus phage M102]
 gi|154238317|emb|CAO77355.1| hypothetical protein [Streptococcus phage M102]
          Length = 298

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 70/143 (48%), Gaps = 2/143 (1%)

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           N + +I+L +NS GG   AG  IY  ++      + +    A S  ++L     K  R  
Sbjct: 39  NSEDDITLILNSGGGSYFAGAEIYSELKASNQKSTAYIASLAGSASAILAMGATK--RVI 96

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
             +A+++ HQ + G  G++ D++  +Q +  I   + E+   N   T +E +  +  D+ 
Sbjct: 97  SESAQLMFHQSAIGAFGKSQDLKEVSQMLDSIDAGIAEVLTANSSLTKDEAKDFISTDNF 156

Query: 190 MSASEACDWGVVDKVLMSRIDIE 212
           + A  A D  +VD++ + +++ E
Sbjct: 157 VDAQRALDLKLVDEIGLVKVNAE 179


>gi|217965838|ref|YP_002351516.1| serine protease [Listeria monocytogenes HCC23]
 gi|217335108|gb|ACK40902.1| serine protease [Listeria monocytogenes HCC23]
 gi|307569613|emb|CAR82792.1| phage protein, Clp family [Listeria monocytogenes L99]
          Length = 276

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 70/137 (51%), Gaps = 8/137 (5%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP--ISTFCMGQAASMGSLLLSAGE 123
           L+A     +I + INS GG V  G AIY+  Q ++ P  I     G AAS+ S++  AG+
Sbjct: 49  LDALGDVSKIYVNINSNGGFVYEGQAIYN--QLVRHPAQIHVRIDGMAASIASVIAMAGD 106

Query: 124 KGMRFALP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
                 +P NA++++H+P+GG  G  SD+E   + +   K+ +   Y  +      E+E 
Sbjct: 107 ---IIEMPANAQMMIHEPAGGAFGNKSDLESAIRALDASKQSIIAAYRTHTTLEVSEIES 163

Query: 183 TLDRDHIMSASEACDWG 199
            +  +  MS  EA + G
Sbjct: 164 MMAEEKWMSGQEAYELG 180


>gi|229122186|ref|ZP_04251401.1| Peptidase S14 ClpP [Bacillus cereus 95/8201]
 gi|228661312|gb|EEL16937.1| Peptidase S14 ClpP [Bacillus cereus 95/8201]
          Length = 247

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 81/159 (50%), Gaps = 8/159 (5%)

Query: 47  VTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTF 106
           + G   ++ A ++  ++  ++AE    +I ++INS GG    G+AI + ++     I   
Sbjct: 34  IGGWFSENNAEVVRRKIQDVKAE----KIHVHINSGGGSAFDGVAICNQLKQHSAEIIVH 89

Query: 107 CMGQAASMGSLLLSAGEKGMRFALP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRL 165
             G AAS  S++  AG+K     +P N  +++HQ S    G A   E+ A+D+ KI   L
Sbjct: 90  IDGWAASAASVIAMAGDK---IIMPSNTMMMIHQASTFEYGNADLFEKTARDLRKIDSAL 146

Query: 166 NEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
              Y K    T EE+++ L  +  ++A EA   G+ D++
Sbjct: 147 AASYKKRFVGTDEELKQLLKDETWLTAEEAVALGLADEI 185


>gi|9634652|ref|NP_038326.1| ORF25 [Streptococcus phage 7201]
 gi|7248482|gb|AAF43518.1|AF145054_26 ORF25 [Streptococcus phage 7201]
          Length = 221

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 4/145 (2%)

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           +  +EI+L I S GG V A   IY  ++     I     G AAS  S++  AG+  +R +
Sbjct: 39  DKDEEITLNIASNGGDVFAASEIYTMLKASGKRIVVNVQGLAASAASVISMAGDT-VRIS 97

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
            P A+I++H+ S G  G + D+E  +  +  I   +   Y    G    E+   + ++  
Sbjct: 98  -PTAQIMIHKASTGIRGNSDDLEHQSAVLSSIDESIALAYEMKTGLKQTELLDLMAKETW 156

Query: 190 MSASEACDWGVVDKVLMSRIDIEEK 214
           ++A  A D G  D+++ S  D EE+
Sbjct: 157 LNAKTAVDKGFADEIMFS--DTEEE 179


>gi|126668253|ref|ZP_01739213.1| putative protease/scaffold protein [Marinobacter sp. ELB17]
 gi|126627279|gb|EAZ97916.1| putative protease/scaffold protein [Marinobacter sp. ELB17]
          Length = 621

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 74/140 (52%), Gaps = 3/140 (2%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L+  +  + +++ INS GG V+  +AIY+ +  + P +     G AAS  S +  AG K 
Sbjct: 34  LKTLDTAQTVNVRINSEGGDVSHAIAIYNALNEL-PDVMIHIDGLAASSASFVAMAGNKT 92

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
           +     NA +++H+P  G  G +  + +  + + K +  L   Y K  G + +++ + L 
Sbjct: 93  LMAG--NAILMIHRPWTGAVGDSDAMRQTGEILDKFQPILVSAYAKKTGLSDDKLNEMLA 150

Query: 186 RDHIMSASEACDWGVVDKVL 205
            +  ++A+EA + G VD+V+
Sbjct: 151 AETWLTAAEALELGFVDEVI 170


>gi|330954018|gb|EGH54278.1| peptidase S14 ClpP [Pseudomonas syringae Cit 7]
          Length = 287

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 66/135 (48%), Gaps = 2/135 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K  ++YINSPGG +  G+AIY+ ++    PI+T  +G AAS  S++  AG K  R    +
Sbjct: 67  KPATVYINSPGGDMFEGLAIYNRLREHSQPITTKVLGLAASAASVIYMAGAK--REVASS 124

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
             +++H       G   D+   A  + +    + ++Y +  G+   ++ + +D +  +  
Sbjct: 125 GFLMIHNCWTLAVGNRHDLRDVANTMEEFDAAMADLYAEGSGQAVADIAEMMDDETFIRG 184

Query: 193 SEACDWGVVDKVLMS 207
             A + G    VL S
Sbjct: 185 RRAVELGFATAVLSS 199


>gi|225863816|ref|YP_002749194.1| peptidase S14 ClpP [Bacillus cereus 03BB102]
 gi|228986816|ref|ZP_04146944.1| Peptidase S14 ClpP [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|225785756|gb|ACO25973.1| peptidase S14 ClpP [Bacillus cereus 03BB102]
 gi|228772898|gb|EEM21336.1| Peptidase S14 ClpP [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
          Length = 247

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 4/133 (3%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP- 131
           ++I ++INS GG    G+AI + ++     I     G AAS  S++  AG+K     +P 
Sbjct: 56  EKIHVHINSGGGSAFDGVAICNQLKQHSAEIIVHIDGWAASAASVIAMAGDK---IIMPS 112

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N  +++HQ S    G A   E+ A+D+ KI   L   Y K    T EE+++ L  +  ++
Sbjct: 113 NTMMMIHQASTFEYGNADLFEKTARDLRKIDSALAASYKKRFVGTDEELKQLLKDETWLT 172

Query: 192 ASEACDWGVVDKV 204
           A EA   G+ D++
Sbjct: 173 AEEAVALGLADEI 185


>gi|217958120|ref|YP_002336664.1| Clp protease [Bacillus cereus AH187]
 gi|217064485|gb|ACJ78735.1| Clp protease [Bacillus cereus AH187]
 gi|282765831|gb|ADA84954.1| Clp protease [Bacillus phage 11143]
          Length = 248

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 4/133 (3%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP- 131
           ++I ++INS GG    G+AI + ++     I     G AAS  S++  AG+K     +P 
Sbjct: 57  EKIHVHINSGGGSAFDGVAICNQLKQHNAEIIVHIDGWAASAASVIAMAGDK---IIMPS 113

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N  +++HQ S    G A   E+ A+D+ KI   L   Y K    T EE+++ L  +  ++
Sbjct: 114 NTMMMIHQASTFEYGNADLFEKTARDLRKIDSALAASYKKRFVGTDEELKQLLKDETWLT 173

Query: 192 ASEACDWGVVDKV 204
           A EA   G+ D++
Sbjct: 174 AEEAVALGLADEI 186


>gi|331701878|ref|YP_004398837.1| peptidase S14 ClpP [Lactobacillus buchneri NRRL B-30929]
 gi|329129221|gb|AEB73774.1| peptidase S14 ClpP [Lactobacillus buchneri NRRL B-30929]
          Length = 233

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 68/129 (52%), Gaps = 2/129 (1%)

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG V AG  IY  ++     +    +G AAS  S++  AG+  ++ + P A++++H
Sbjct: 48  INSPGGDVFAGSEIYTALKNYTGNVEVDIVGLAASAASVIAMAGDT-IKIS-PTAQLMIH 105

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           + S    G A D+    Q +    + +  +YV+  G   + V + + ++  ++A +A + 
Sbjct: 106 RASTVSQGNADDLSSDLQGLNSTDQSIANVYVQRTGLDPQTVMQMMAKETYINAKDAVEQ 165

Query: 199 GVVDKVLMS 207
           G  D+++ +
Sbjct: 166 GFADEMMFA 174


>gi|42779480|ref|NP_976727.1| ClpP protease family protein [Bacillus cereus ATCC 10987]
 gi|42735396|gb|AAS39335.1| ClpP protease family protein [Bacillus cereus ATCC 10987]
          Length = 229

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 81/167 (48%), Gaps = 4/167 (2%)

Query: 41  KERIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           +ER +++ G I  E      +  ++   E      +I+++INSPGG V A   IY+ +  
Sbjct: 13  EERTLYLNGVISEETWWGDEVTPKIFKDELLAGTGDITVWINSPGGDVFAAAQIYNMLME 72

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
               ++    G AAS  S++  AG  G  +  P + +++H PS    G + ++ R    +
Sbjct: 73  YTGKVTVKIDGLAASAASVIAMAG--GDVYMSPVSMLMIHNPSTIAIGDSEEMLRAKALL 130

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            ++K  +   Y    G +  ++   +D +  M+A++A + G  DK++
Sbjct: 131 DEVKESIINAYELKTGLSRTKLSHLMDAESWMNANKAIELGFADKIM 177


>gi|227522327|ref|ZP_03952376.1| S14 family endopeptidase ClpP [Lactobacillus hilgardii ATCC 8290]
 gi|227090534|gb|EEI25846.1| S14 family endopeptidase ClpP [Lactobacillus hilgardii ATCC 8290]
          Length = 235

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 67/127 (52%), Gaps = 2/127 (1%)

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG V AG  IY  ++     +    +G AAS  S++  AG+  ++ + P A++++H
Sbjct: 50  INSPGGDVFAGSEIYTALKNYTGNVEVDIVGLAASAASVIAMAGDT-IKIS-PTAQLMIH 107

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           + S    G A D+    Q +    + +  +YV+  G   + V + + ++  ++A +A + 
Sbjct: 108 RASTVSQGNADDLSSDLQGLNSTDQSIANVYVQRTGLDPQTVMQMMAKETYINAKDAVEQ 167

Query: 199 GVVDKVL 205
           G  D+++
Sbjct: 168 GFADEMM 174


>gi|312886089|ref|ZP_07745712.1| peptidase S14 ClpP [Mucilaginibacter paludis DSM 18603]
 gi|311301439|gb|EFQ78485.1| peptidase S14 ClpP [Mucilaginibacter paludis DSM 18603]
          Length = 378

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 71/144 (49%), Gaps = 13/144 (9%)

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           A+L+ L+A  P K I ++INSPGGVV  G  IY  +      + T  +G  AS+ +++  
Sbjct: 39  AELMALDAMRP-KSIEIWINSPGGVVMDGYNIYAAILKSVTKVDTVGVGCMASIAAVIFQ 97

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG    R  +  + ++ H P GG   +  ++ R +  I K+        V   GK   E+
Sbjct: 98  AGR--TRTMMDYSWLMYHNPFGGDDTKVLEVMRES--ISKM--------VARSGKPEAEI 145

Query: 181 EKTLDRDHIMSASEACDWGVVDKV 204
              + ++  ++A EA ++G  D +
Sbjct: 146 LAMMQKETYITAQEALEYGFADAI 169


>gi|229199634|ref|ZP_04326284.1| Clp protease [Bacillus cereus m1293]
 gi|228583836|gb|EEK42004.1| Clp protease [Bacillus cereus m1293]
          Length = 198

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 68/131 (51%), Gaps = 4/131 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I+++INSPGG V   +AI++ ++  K  ++ +  G AAS GS++  A +K     +P N 
Sbjct: 13  INIHINSPGGDVFESIAIHNLLKNHKAKVNVYIDGLAASGGSVIAMAADK---IVMPKNT 69

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H+     +G + D+ + A  + KI   + E Y         E+E  L  +  ++A 
Sbjct: 70  MMMIHKAWTYAAGNSEDLRKVANQLEKIDTAVTESYTTRFVGEKNELETLLAEETWLTAE 129

Query: 194 EACDWGVVDKV 204
           E   +G  D++
Sbjct: 130 ECKTFGFCDEI 140


>gi|218133443|ref|ZP_03462247.1| hypothetical protein BACPEC_01308 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990818|gb|EEC56824.1| hypothetical protein BACPEC_01308 [Bacteroides pectinophilus ATCC
           43243]
          Length = 271

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 79/168 (47%), Gaps = 4/168 (2%)

Query: 42  ERIVFVTGQIEDHM--ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           ER +F+ G I D       +  QL   E       I+++INSPGG V A   IY+ ++  
Sbjct: 20  ERTLFLNGMISDETWYGDEVTPQLFKDELNAGNGNITVWINSPGGDVFAAAQIYNMLRDY 79

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
           K  ++    G AAS  S++  AG+       P A +++H P+    G+  D+++    + 
Sbjct: 80  KGSVTVKIDGIAASAASVIAMAGDT--VCVSPVAMMMIHNPATMAMGETRDMQKAIAMLN 137

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           ++K  +   Y    G T   +   +D +   +A +A + G  DK+L S
Sbjct: 138 EVKESILNAYEFKTGLTRARLSHMMDDETWFNAKKAVELGFADKILFS 185


>gi|324324387|gb|ADY19647.1| peptidase S14 ClpP [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 247

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 4/133 (3%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP- 131
           ++I ++INS GG    G+AI + ++     I     G AAS  S++  AG+K     +P 
Sbjct: 56  EKIHVHINSGGGSAFDGVAICNQLKQHSAEIIVHIDGWAASAASVIAMAGDK---IIMPS 112

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N  +++HQ S    G A   E+ A+D+ KI   L   Y K    T EE+++ L  +  ++
Sbjct: 113 NTMMMIHQASTFEYGNADLFEKTARDLRKIDSALAASYKKRFVGTDEELKQLLKDETWLT 172

Query: 192 ASEACDWGVVDKV 204
           A EA   G+ D++
Sbjct: 173 AEEAVALGLADEI 185


>gi|217971973|ref|YP_002356724.1| peptidase S14 ClpP [Shewanella baltica OS223]
 gi|217497108|gb|ACK45301.1| peptidase S14 ClpP [Shewanella baltica OS223]
          Length = 669

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 73/142 (51%), Gaps = 8/142 (5%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM--GQAASMGSLLLSAGE 123
           L+A      I+  I+SPGG V  GMAIY+ ++    P    C   G AASM S++  A +
Sbjct: 48  LQALGKVGTITARIHSPGGDVFEGMAIYNMIK--GHPAHKVCYIDGLAASMASVIAMAFD 105

Query: 124 KGMRFALP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
           +     +P NA +++H+P GG  G A D+ ++A  + K++  L   Y    G + +E+  
Sbjct: 106 E---VIMPENAMMMVHKPWGGTLGDAEDMRKYADLLDKVEGNLVGAYQHKTGLSEDELHA 162

Query: 183 TLDRDHIMSASEACDWGVVDKV 204
            L  +  ++  EA + G  + +
Sbjct: 163 LLAAETWLTGREAVEKGFANTL 184


>gi|303239710|ref|ZP_07326234.1| peptidase S14 ClpP [Acetivibrio cellulolyticus CD2]
 gi|302592647|gb|EFL62371.1| peptidase S14 ClpP [Acetivibrio cellulolyticus CD2]
          Length = 93

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 53/91 (58%), Gaps = 2/91 (2%)

Query: 114 MGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC 173
           M + LLS+G KG R AL N++I++   SG  +   SD ++ +  I  +  ++NEI++KN 
Sbjct: 1   MAAFLLSSGTKGKRIALENSKIVMAPLSGKNTSDLSDAQKKS--IETVINKMNEIWLKNT 58

Query: 174 GKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           G+    +    +   + +  EA D+G++D++
Sbjct: 59  GQDIARIINDSENLRVFNQHEARDYGIIDRI 89


>gi|168186894|ref|ZP_02621529.1| serine protease [Clostridium botulinum C str. Eklund]
 gi|169295178|gb|EDS77311.1| serine protease [Clostridium botulinum C str. Eklund]
          Length = 246

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 72/141 (51%), Gaps = 4/141 (2%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           LE+ N    I+++INS GG V  G+AIY+ ++      + +  G A S+ S++  AG+K 
Sbjct: 51  LESINNVSNINIFINSYGGEVKEGLAIYNQLKRHPAQKTVYVDGFACSIASVIAMAGDKV 110

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK--TYEEVEKT 183
           +     N  +++H  + G  G A ++ + A D+  I +     Y+   G   + E + + 
Sbjct: 111 IMG--TNTLMMIHHAAMGAWGNAEELRKAANDVEVIDKASCSSYLTKAGDKLSEETLNQL 168

Query: 184 LDRDHIMSASEACDWGVVDKV 204
           LD    ++A +   +G+ D++
Sbjct: 169 LDNQTWLNAEQCLQYGLCDEI 189


>gi|220930200|ref|YP_002507109.1| peptidase S14 ClpP [Clostridium cellulolyticum H10]
 gi|220000528|gb|ACL77129.1| peptidase S14 ClpP [Clostridium cellulolyticum H10]
          Length = 229

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 81/167 (48%), Gaps = 4/167 (2%)

Query: 41  KERIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           +ER +++ G I  E      +  ++   E      +I+++INSPGG V A   IY+ +  
Sbjct: 13  EERTLYLNGVISEETWWGDEVTPKIFKDELLAGTGDITVWINSPGGDVFAAAQIYNMLME 72

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
               ++    G AAS  S++  AG  G  +  P + +++H PS    G + ++ R    +
Sbjct: 73  YTGKVTVKIDGLAASAASVIAMAG--GDVYMSPVSMLMIHNPSTIAIGDSEEMLRAKALL 130

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            ++K  +   Y    G +  ++   +D +  M+A++A + G  DK++
Sbjct: 131 DEVKESIINAYELKTGLSRTKLSHLMDAESWMNANKAIELGFADKIM 177


>gi|229092690|ref|ZP_04223838.1| Peptidase S14 ClpP [Bacillus cereus Rock3-42]
 gi|228690717|gb|EEL44494.1| Peptidase S14 ClpP [Bacillus cereus Rock3-42]
          Length = 247

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 4/133 (3%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP- 131
           ++I ++INS GG    G+AI + ++     I     G AAS  S++  AG+K     +P 
Sbjct: 56  EKIHVHINSGGGSAFDGVAICNQLKQHSAEIIVHIDGWAASAASVIAMAGDK---IIMPS 112

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N  +++HQ S    G A   E+ A+D+ KI   L   Y K    T EE+++ L  +  ++
Sbjct: 113 NTMMMIHQASTFEYGNADLFEKTARDLRKIDSALAASYKKRFVGTDEELKQLLKDETWLT 172

Query: 192 ASEACDWGVVDKV 204
           A EA   G+ D++
Sbjct: 173 AEEAVALGLADEI 185


>gi|126175793|ref|YP_001051942.1| peptidase S14 ClpP [Shewanella baltica OS155]
 gi|125998998|gb|ABN63073.1| peptidase S14, ClpP [Shewanella baltica OS155]
          Length = 640

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 8/133 (6%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM--GQAASMGSLLLSAGEKGMRFALP- 131
           I+  I+SPGG V  GMAIY+ ++    P    C   G AASM S++  A ++     +P 
Sbjct: 29  ITARIHSPGGDVFEGMAIYNMIK--GHPAHKVCYIDGLAASMASVIAMAFDE---VIMPE 83

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           NA +++H+P GG  G A D+ ++A  + K++  L   Y    G + +E+   L  +  ++
Sbjct: 84  NAMMMVHKPWGGTLGDAEDMRKYADLLDKVEGNLVGAYQHKTGLSEDELHALLAAETWLT 143

Query: 192 ASEACDWGVVDKV 204
             EA + G  + +
Sbjct: 144 GREAVEKGFANTL 156


>gi|125624869|ref|YP_001033352.1| hypothetical protein llmg_2097 [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|290891540|ref|ZP_06554597.1| hypothetical protein AWRIB429_1987 [Oenococcus oeni AWRIB429]
 gi|124493677|emb|CAL98664.1| conserved hypothetical protein [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|290478793|gb|EFD87460.1| hypothetical protein AWRIB429_1987 [Oenococcus oeni AWRIB429]
 gi|300071664|gb|ADJ61064.1| ATP dependent Clp protease [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 234

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 2/133 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           +EI L I S GG V A   IY  ++    P++    G AAS  S++  AG+  +  + P 
Sbjct: 42  EEIVLNIASNGGDVFAASEIYTAIKMNGKPVTVNIQGLAASAASVIAMAGDT-VNIS-PT 99

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A++++H+   G  G A D E+ A+ +  + + +   Y    G    ++ + +  +  M+A
Sbjct: 100 AQLMIHKAMSGSQGNADDFEQEAKVLNGVDQSIAAAYELKTGMKQSDLLQLMSNETWMTA 159

Query: 193 SEACDWGVVDKVL 205
            +A D G  D ++
Sbjct: 160 QDAVDKGFADNIM 172


>gi|13095787|ref|NP_076678.1| protease [Lactococcus phage bIL286]
 gi|15673378|ref|NP_267552.1| ATP dependent Clp protease [Lactococcus lactis subsp. lactis
           Il1403]
 gi|30089895|ref|NP_839925.1| putative ClpP protease [Lactococcus phage P335 sensu lato]
 gi|12724383|gb|AAK05494.1|AE006371_8 prophage pi3 protein 23, ATP dependent Clp protease [Lactococcus
           lactis subsp. lactis Il1403]
 gi|12830976|gb|AAK08331.1|AF323669_44 protease [Lactococcus phage bIL286]
 gi|21954684|gb|AAM83073.1|AF489521_34 putative ClpP protease [Lactococcus phage 4268]
          Length = 235

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 2/133 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           +EI L I S GG V A   IY  ++    P++    G AAS  S++  AG+  +  + P 
Sbjct: 43  EEIVLNIASNGGDVFAASEIYTAIKMNGKPVTVNIQGLAASAASVIAMAGDT-VNIS-PT 100

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A++++H+   G  G A D E+ A+ +  + + +   Y    G    ++ + +  +  M+A
Sbjct: 101 AQLMIHKAMSGSQGNADDFEQEAKVLNGVDQSIAAAYELKTGMKQSDLLQLMSNETWMTA 160

Query: 193 SEACDWGVVDKVL 205
            +A D G  D ++
Sbjct: 161 QDAVDKGFADNIM 173


>gi|298486633|ref|ZP_07004691.1| Prophage Clp protease-like protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298158848|gb|EFH99910.1| Prophage Clp protease-like protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 199

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 2/133 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K  ++YINSPGG +  G+AIY+ ++    PI+T  +G AAS  S++  AG K  R    +
Sbjct: 67  KPATVYINSPGGDMFEGLAIYNRLREHSQPITTKVLGLAASAASVIYMAGAK--REVASS 124

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
             +++H       G   D+   A  + +    + ++Y +  G+   ++ + +D +  +  
Sbjct: 125 GFLMIHNCWTLAVGNRHDLRDVANTMEEFDAAMADLYAEGSGQAVADIAEMMDDETFIRG 184

Query: 193 SEACDWGVVDKVL 205
             A + G    VL
Sbjct: 185 RRAVELGFATAVL 197


>gi|257428232|ref|ZP_05604630.1| protease [Staphylococcus aureus subsp. aureus 65-1322]
 gi|258445568|ref|ZP_05693750.1| prophage protease [Staphylococcus aureus A6300]
 gi|258455562|ref|ZP_05703519.1| conserved hypothetical protein [Staphylococcus aureus A5937]
 gi|282905858|ref|ZP_06313713.1| phage protease [Staphylococcus aureus subsp. aureus Btn1260]
 gi|257275073|gb|EEV06560.1| protease [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257855615|gb|EEV78548.1| prophage protease [Staphylococcus aureus A6300]
 gi|257862250|gb|EEV85021.1| conserved hypothetical protein [Staphylococcus aureus A5937]
 gi|282331150|gb|EFB60664.1| phage protease [Staphylococcus aureus subsp. aureus Btn1260]
          Length = 257

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 69/133 (51%), Gaps = 3/133 (2%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           EI ++INS GG V  G AIY+ ++     I+ +    AAS+ S++  +G+    F   N+
Sbjct: 53  EIDVHINSSGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGD--TIFMHKNS 110

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK-TYEEVEKTLDRDHIMSA 192
            +++H       G A ++ + A  + K     N  Y+        E++++ LD +  ++A
Sbjct: 111 FLMIHNSWVMTVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEQLKQMLDAETWLTA 170

Query: 193 SEACDWGVVDKVL 205
            EA  +G++D++L
Sbjct: 171 EEALSFGLIDEIL 183


>gi|323442648|gb|EGB00276.1| phiSLT ORF257-like protein, putative prophage protease
           [Staphylococcus aureus O46]
          Length = 255

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 68/133 (51%), Gaps = 3/133 (2%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           EI ++INS GG V  G AIY+ ++     I+ +    AAS+ S++  +G+    F   N+
Sbjct: 51  EIDVHINSSGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGD--TIFMHKNS 108

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK-TYEEVEKTLDRDHIMSA 192
            +++H       G A ++ + A  + K     N  Y+        E +++ LD +  ++A
Sbjct: 109 FLMIHNSWVMTVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTA 168

Query: 193 SEACDWGVVDKVL 205
            EA  +G++D+VL
Sbjct: 169 EEALSFGLIDEVL 181


>gi|251781097|ref|ZP_04824017.1| serine protease [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243085412|gb|EES51302.1| serine protease [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 253

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 73/140 (52%), Gaps = 9/140 (6%)

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           FL+  N    + +Y+NS GG V AG+AIY  ++      + +  G AAS+ S++  AG+K
Sbjct: 61  FLKELNSFDSLDIYVNSGGGSVFAGIAIYHQLKRHNGFKTVYVDGIAASIASVISCAGDK 120

Query: 125 GMRFALP-NARILLHQPSGGF---SGQASDIERHAQDIVKIKRRLNEIYVKNC--GKTYE 178
            +   +P +A+ ++H+P+  +   S  A ++ + A  +   +  +  IY++N   G T E
Sbjct: 121 VI---IPKSAQFMIHKPTASYFWTSLNADELRKEADTLDVCQDSIRNIYMENVKEGITEE 177

Query: 179 EVEKTLDRDHIMSASEACDW 198
           E+   +D +   +     D+
Sbjct: 178 EINNLIDSETWFTGETVTDY 197


>gi|15837113|ref|NP_297801.1| hypothetical protein XF0511 [Xylella fastidiosa 9a5c]
 gi|9105364|gb|AAF83321.1|AE003899_13 hypothetical protein XF_0511 [Xylella fastidiosa 9a5c]
          Length = 752

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 65/134 (48%), Gaps = 7/134 (5%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I + INS GGVV+ G+AIY+ +      I     G AAS+ SL+  AG    R   PN+ 
Sbjct: 60  IHVRINSNGGVVSDGLAIYNALTAHPATIHVTIDGVAASIASLIAQAGT--TRRVYPNSL 117

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL---DRDHIMS 191
           +++H P  G  G A D+   A  +  +   ++  Y    G T+ E  + +     DH ++
Sbjct: 118 MMIHGPQTGGWGFAEDLRDTAAMLDTMAAAMHTAYTS--GATHPEAIRRMLSDGHDHWLT 175

Query: 192 ASEACDWGVVDKVL 205
           A +    G+ D ++
Sbjct: 176 AQDMIAVGLADTII 189


>gi|75762668|ref|ZP_00742509.1| ATP-dependent endopeptidase clp proteolytic subunit clpP [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|74489848|gb|EAO53223.1| ATP-dependent endopeptidase clp proteolytic subunit clpP [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
          Length = 227

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 65/127 (51%), Gaps = 2/127 (1%)

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG V  G  IY  ++     +    +G AAS  S++  AG+K ++ + P A+I++H
Sbjct: 53  INSPGGYVHEGSEIYTALKNYPGNVEVQIVGLAASAASVIAMAGDK-VQIS-PTAQIMIH 110

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
             S    G   D+E+ A+ +    R +   YV   GK+ +E+   +  +  M   +A + 
Sbjct: 111 NASMWNGGDHRDMEKAAEMLKTTDRAIVNAYVIKSGKSEKELLNMMAEETWMGPQQALEN 170

Query: 199 GVVDKVL 205
             VD+++
Sbjct: 171 NFVDEIM 177


>gi|298693635|gb|ADI96857.1| Prophage Clp protease-like protein [Staphylococcus aureus subsp.
           aureus ED133]
          Length = 257

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 68/133 (51%), Gaps = 3/133 (2%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           EI ++INS GG V  G AIY+ ++     I+ +    AAS+ S++  +G+    F   N+
Sbjct: 53  EIDVHINSSGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGD--TIFMHKNS 110

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK-TYEEVEKTLDRDHIMSA 192
            +++H       G A ++ + A  + K     N  Y+        E +++ LD +  ++A
Sbjct: 111 FLMIHNSWVMTVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTA 170

Query: 193 SEACDWGVVDKVL 205
            EA  +G++D+VL
Sbjct: 171 EEALSFGLIDEVL 183


>gi|152999295|ref|YP_001364976.1| peptidase S14 ClpP [Shewanella baltica OS185]
 gi|151363913|gb|ABS06913.1| peptidase S14 ClpP [Shewanella baltica OS185]
          Length = 671

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 8/133 (6%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM--GQAASMGSLLLSAGEKGMRFALP- 131
           I+  I+SPGG V  GMAIY+ ++    P    C   G AASM S++  A ++     +P 
Sbjct: 57  ITARIHSPGGDVFEGMAIYNMIK--GHPAHKVCYIDGLAASMASVIAMAFDE---VIMPE 111

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           NA +++H+P GG  G A D+ ++A  + K++  L   Y    G + +E+   L  +  ++
Sbjct: 112 NAMMMVHKPWGGTLGDAEDMRKYADLLDKVEGNLVGAYQHKTGLSEDELHALLAAETWLT 171

Query: 192 ASEACDWGVVDKV 204
             EA + G  + +
Sbjct: 172 GREAVEKGFANTL 184


>gi|228912077|ref|ZP_04075797.1| Peptidase S14 ClpP [Bacillus thuringiensis IBL 200]
 gi|228847580|gb|EEM92514.1| Peptidase S14 ClpP [Bacillus thuringiensis IBL 200]
          Length = 247

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 4/133 (3%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP- 131
           ++I ++INS GG    G+AI + ++     I     G AAS  S++  AG+K     +P 
Sbjct: 56  EKIHVHINSGGGSAFDGVAICNQLKQHDAEIIVHIDGWAASAASVIAMAGDK---IIMPS 112

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N  +++HQ S    G A   E+ A+D+ KI   L   Y K    T EE+++ L  +  ++
Sbjct: 113 NTMMMIHQASTFEYGNADLFEKTARDLRKIDSALAASYKKRFVGTDEELKQLLKDETWLT 172

Query: 192 ASEACDWGVVDKV 204
           A EA   G+ D++
Sbjct: 173 AEEAVALGLADEI 185


>gi|149882820|ref|YP_001294799.1| Clp protease [Microbacterium phage Min1]
 gi|148763451|gb|ABR10469.1| Clp protease [Microbacterium phage Min1]
          Length = 399

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 4/130 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK-GMRFALPN 132
           E++++INSPGG    G+ I + ++  K  +     G AAS  S++   G+   M      
Sbjct: 62  EMTVHINSPGGAAWDGITIMNALRAHKAQVHVVVDGLAASAASVIAMGGDTITMNR---G 118

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A++++H  SGG  G A+++E  A  + K+   + + Y    G T E+    +  +   +A
Sbjct: 119 AQMMIHDASGGVWGNAAEVEAVATILHKLSDSIADTYAARTGGTREQWRAVMKDEAWYTA 178

Query: 193 SEACDWGVVD 202
            EA   G+ D
Sbjct: 179 EEAVAAGLAD 188


>gi|317129435|ref|YP_004095717.1| peptidase S14 ClpP [Bacillus cellulosilyticus DSM 2522]
 gi|315474383|gb|ADU30986.1| peptidase S14 ClpP [Bacillus cellulosilyticus DSM 2522]
          Length = 250

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 2/138 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           +++ + INS GG V AG  IY  ++  K  +    MG AAS  S+    G K +R A P 
Sbjct: 41  EDLEVEINSGGGSVWAGSEIYTLLKSCKQNVVVNIMGIAASAASVAAMGG-KLIRIA-PT 98

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
            +I++H    G SG   ++E  A+ +  + R +   Y+   GK  EE+   + ++  M A
Sbjct: 99  GQIMIHNSMSGASGDHRELEHAAEMLKGVDRSIANAYILKTGKNMEELLSLMAKETYMGA 158

Query: 193 SEACDWGVVDKVLMSRID 210
            EA + G  D+++    D
Sbjct: 159 KEAKELGFADEIMFDEDD 176


>gi|229061293|ref|ZP_04198642.1| Peptidase S14 ClpP [Bacillus cereus AH603]
 gi|228718018|gb|EEL69660.1| Peptidase S14 ClpP [Bacillus cereus AH603]
          Length = 247

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 4/133 (3%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP- 131
           ++I ++INS GG    G+AI + ++     I     G AAS  S++  AG+K     +P 
Sbjct: 56  EKIHVHINSGGGSAFDGVAICNLLKQHDAEIIVHIDGWAASAASVIAMAGDK---IVMPS 112

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N  +++HQ S    G A   E+ A+D+ KI   L   Y K    T EE+ + L  +  ++
Sbjct: 113 NTMMMIHQASTIEYGNADLFEKTARDLRKIDSALAASYKKRFVGTDEELRQLLKDETWLT 172

Query: 192 ASEACDWGVVDKV 204
           A EA   G+ D++
Sbjct: 173 AEEAVALGLADEI 185


>gi|281416390|ref|YP_003347414.1| scaffolding protein [Streptococcus phage Abc2]
 gi|226823041|gb|ACO83168.1| scaffolding protein [Streptococcus phage Abc2]
          Length = 222

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 2/138 (1%)

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           A +  +EI+L I S GG V A   IY  ++     I     G AAS  S++  AG   +R
Sbjct: 37  ANDEDEEITLNIASNGGDVFAASEIYTMLRDSGKRIVVNIQGLAASAASVISMAGNT-VR 95

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
            + P A I++H+ S GF G + D+E  +  +  I   +   Y    G    E+ + + ++
Sbjct: 96  IS-PTAHIMIHKASSGFVGNSDDMEHQSVVLNSIDESIALAYEMKTGLKQSELLELMAKE 154

Query: 188 HIMSASEACDWGVVDKVL 205
             ++A  A D G  D+++
Sbjct: 155 TWLNAKTAVDKGFADEIM 172


>gi|188589517|ref|YP_001920628.1| Clp protease [Clostridium botulinum E3 str. Alaska E43]
 gi|188499798|gb|ACD52934.1| Clp protease family protein [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 232

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 87/182 (47%), Gaps = 26/182 (14%)

Query: 43  RIVFVTGQIEDHM-------ATL---ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI 92
           +++ + GQIE HM       AT    I  QL+ LE  +  K + + +N+ GG V AG+AI
Sbjct: 42  QVLSIIGQIEGHMVLPPQTKATRYEHIIPQLIDLEQNDNVKGVLIVLNTVGGDVEAGLAI 101

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH--QPSGGFSGQASD 150
            + ++ +  P  +   G   S+G  L +A +    F  P+A +++H  + +G   G A  
Sbjct: 102 AEMIRSMSKPTVSIVTGGGHSIGVPLATASD--YSFITPSATMIVHPVRMNGFIIGVAQT 159

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDHIMSASEACDWGVVD 202
            E       K++ R+NE   +      EE+EK +        D   I+   +A + G++D
Sbjct: 160 FEYFK----KMQERINEFITRTSHIKEEELEKFMLQTNELLNDVGTILIGKQAVECGLID 215

Query: 203 KV 204
           +V
Sbjct: 216 EV 217


>gi|295428018|ref|ZP_06820650.1| phage protease [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|295128376|gb|EFG58010.1| phage protease [Staphylococcus aureus subsp. aureus EMRSA16]
          Length = 261

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 68/133 (51%), Gaps = 3/133 (2%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           EI ++INS GG V  G AIY+ ++     I+ +    AAS+ S++  +G+    F   N+
Sbjct: 57  EIDVHINSSGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGD--TIFMHKNS 114

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK-TYEEVEKTLDRDHIMSA 192
            +++H       G A ++ + A  + K     N  Y+        E +++ LD +  ++A
Sbjct: 115 FLMIHNSWVMTVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDTETWLTA 174

Query: 193 SEACDWGVVDKVL 205
            EA  +G++D++L
Sbjct: 175 EEALSFGLIDEIL 187


>gi|317128807|ref|YP_004095089.1| peptidase S14 ClpP [Bacillus cellulosilyticus DSM 2522]
 gi|315473755|gb|ADU30358.1| peptidase S14 ClpP [Bacillus cellulosilyticus DSM 2522]
          Length = 243

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 69/129 (53%), Gaps = 7/129 (5%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPP---ISTFCMGQAASMGSLLLSAGEKGMRFA 129
           K+I+LY+NS GG V +G+++ + ++  +     I+ +  G A S+ S+L+    K   + 
Sbjct: 50  KKINLYVNSGGGSVFSGLSMLNMLKRAREKGSYITAYVDGLAGSIASVLIFGANK--IYC 107

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC--GKTYEEVEKTLDRD 187
             N+ I++H+   G  G A+D  + A+D+ KI   +   Y  N   G   E +++ +D++
Sbjct: 108 PSNSYIMIHRAWTGMYGNATDFLKMAEDLEKIDEGILNTYKDNLREGVDIETIKEMVDKE 167

Query: 188 HIMSASEAC 196
             ++  +A 
Sbjct: 168 TWLTGEDAS 176


>gi|228905162|ref|ZP_04069169.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis IBL 4222]
 gi|228854484|gb|EEM99135.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis IBL 4222]
          Length = 233

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 65/127 (51%), Gaps = 2/127 (1%)

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG V  G  IY  ++     +    +G AAS  S++  AG+K ++ + P A+I++H
Sbjct: 25  INSPGGYVHEGSEIYTALKNYPGNVEVQIVGLAASAASVIAMAGDK-VQIS-PTAQIMIH 82

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
             S    G   D+E+ A+ +    R +   YV   GK+ +E+   +  +  M   +A + 
Sbjct: 83  NASMWNGGDHRDMEKAAEMLKTTDRAIVNAYVIKSGKSEKELLNMMAEETWMGPQQALEN 142

Query: 199 GVVDKVL 205
             VD+++
Sbjct: 143 NFVDEIM 149


>gi|49483694|ref|YP_040918.1| phage protease [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49241823|emb|CAG40515.1| phage protease [Staphylococcus aureus subsp. aureus MRSA252]
          Length = 257

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 68/133 (51%), Gaps = 3/133 (2%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           EI ++INS GG V  G AIY+ ++     I+ +    AAS+ S++  +G+    F   N+
Sbjct: 53  EIDVHINSSGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGD--TIFMHKNS 110

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK-TYEEVEKTLDRDHIMSA 192
            +++H       G A ++ + A  + K     N  Y+        E +++ LD +  ++A
Sbjct: 111 FLMIHNSWVMTVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDTETWLTA 170

Query: 193 SEACDWGVVDKVL 205
            EA  +G++D++L
Sbjct: 171 EEALSFGLIDEIL 183


>gi|163941505|ref|YP_001646389.1| peptidase S14 ClpP [Bacillus weihenstephanensis KBAB4]
 gi|163863702|gb|ABY44761.1| peptidase S14 ClpP [Bacillus weihenstephanensis KBAB4]
          Length = 247

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 4/133 (3%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP- 131
           ++I ++INS GG    G+AI + ++     I     G AAS  S++  AG+K     +P 
Sbjct: 56  EKIHVHINSGGGSAFDGVAICNLLKQHDAEIIVHIDGWAASAASVIAMAGDK---IVMPS 112

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N  +++HQ S    G A   E+ A+D+ KI   L   Y K    T EE+ + L  +  ++
Sbjct: 113 NTMMMIHQASTIEYGNADLFEKTARDLRKIDSALAASYKKRFVGTDEELRQLLKDETWLT 172

Query: 192 ASEACDWGVVDKV 204
           A EA   G+ D++
Sbjct: 173 AEEAVALGLADEI 185


>gi|251780299|ref|ZP_04823219.1| Clp protease family protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243084614|gb|EES50504.1| Clp protease family protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 232

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 87/182 (47%), Gaps = 26/182 (14%)

Query: 43  RIVFVTGQIEDHM-------ATL---ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI 92
           +++ + GQIE HM       AT    I  QL+ LE  +  K + + +N+ GG V AG+AI
Sbjct: 42  QVLSIIGQIEGHMVLPPQTKATRYEHIIPQLIDLEQNDNVKGVLIVLNTVGGDVEAGLAI 101

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH--QPSGGFSGQASD 150
            + ++ +  P  +   G   S+G  L +A +    F  P+A +++H  + +G   G A  
Sbjct: 102 AEMIRSMSKPTVSIVTGGGHSIGVPLATASD--YSFITPSATMIVHPVRMNGFIIGVAQT 159

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDHIMSASEACDWGVVD 202
            E       K++ R+NE   +      EE+EK +        D   I+   +A + G++D
Sbjct: 160 FEYFK----KMQERINEFITRTSHIKEEELEKFMLQTNELLNDVGTILIGKQAVECGLID 215

Query: 203 KV 204
           +V
Sbjct: 216 EV 217


>gi|229032762|ref|ZP_04188721.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
          AH1271]
 gi|228728557|gb|EEL79574.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
          AH1271]
          Length = 39

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/36 (63%), Positives = 31/36 (86%)

Query: 16 LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQI 51
          + L+P V+EQTNRGER+YDIYSRLLK+RI+ +  Q+
Sbjct: 1  MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGRQL 36


>gi|153955259|ref|YP_001396024.1| Phage-related protease [Clostridium kluyveri DSM 555]
 gi|219855684|ref|YP_002472806.1| hypothetical protein CKR_2341 [Clostridium kluyveri NBRC 12016]
 gi|146348117|gb|EDK34653.1| Phage-related protease [Clostridium kluyveri DSM 555]
 gi|219569408|dbj|BAH07392.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 229

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 68/132 (51%), Gaps = 2/132 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I+++INSPGG V A   IY+ +      ++    G AAS  S++  AG  G  +  P +
Sbjct: 48  DITVWINSPGGDVFAAAQIYNMLMDYTGKVTVKIDGLAASAASVIAMAG--GDVYMSPVS 105

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            I++H PS    G + ++ R    + ++K  +   Y    G +  ++   +D +  M+A+
Sbjct: 106 MIMIHNPSTIAIGDSEEMLRAKALLDEVKESIINAYELKTGLSRIKLSHLMDAESWMNAN 165

Query: 194 EACDWGVVDKVL 205
           +A + G  DK++
Sbjct: 166 KAIELGFADKIM 177


>gi|323439020|gb|EGA96753.1| phiSLT ORF257-like protein, putative prophage protease
           [Staphylococcus aureus O11]
          Length = 255

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 68/133 (51%), Gaps = 3/133 (2%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           EI ++INS GG V  G AIY+ ++     I+ +    AAS+ S++  +G+    F   N+
Sbjct: 51  EIDVHINSSGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGD--TIFMHKNS 108

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK-TYEEVEKTLDRDHIMSA 192
            +++H       G A ++ + A  + K     N  Y+        E +++ LD +  ++A
Sbjct: 109 FLMIHNSWVMTVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTA 168

Query: 193 SEACDWGVVDKVL 205
            EA  +G++D++L
Sbjct: 169 EEALSFGLIDEIL 181


>gi|148267495|ref|YP_001246438.1| peptidase S14, ClpP [Staphylococcus aureus subsp. aureus JH9]
 gi|150393549|ref|YP_001316224.1| peptidase S14 ClpP [Staphylococcus aureus subsp. aureus JH1]
 gi|282927349|ref|ZP_06334967.1| peptidase S14, ClpP [Staphylococcus aureus A10102]
 gi|147740564|gb|ABQ48862.1| peptidase S14, ClpP [Staphylococcus aureus subsp. aureus JH9]
 gi|149946001|gb|ABR51937.1| peptidase S14 ClpP [Staphylococcus aureus subsp. aureus JH1]
 gi|282590673|gb|EFB95749.1| peptidase S14, ClpP [Staphylococcus aureus A10102]
          Length = 257

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 68/133 (51%), Gaps = 3/133 (2%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           EI ++INS GG V  G AIY+ ++     I+ +    AAS+ S++  +G+    F   N+
Sbjct: 53  EIDVHINSSGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGD--TIFMHKNS 110

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK-TYEEVEKTLDRDHIMSA 192
            +++H       G A ++ + A  + K     N  Y+        E +++ LD +  ++A
Sbjct: 111 FLMIHNSWVMTVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTA 170

Query: 193 SEACDWGVVDKVL 205
            EA  +G++D++L
Sbjct: 171 EEALSFGLIDEIL 183


>gi|320140399|gb|EFW32254.1| Clp protease [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320142757|gb|EFW34560.1| Clp protease [Staphylococcus aureus subsp. aureus MRSA177]
          Length = 255

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 68/133 (51%), Gaps = 3/133 (2%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           EI ++INS GG V  G AIY+ ++     I+ +    AAS+ S++  +G+    F   N+
Sbjct: 51  EIDVHINSSGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGD--TIFMHKNS 108

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK-TYEEVEKTLDRDHIMSA 192
            +++H       G A ++ + A  + K     N  Y+        E +++ LD +  ++A
Sbjct: 109 FLMIHNSWVMTVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTA 168

Query: 193 SEACDWGVVDKVL 205
            EA  +G++D++L
Sbjct: 169 EEALSFGLIDEIL 181


>gi|12719432|ref|NP_075503.1| protease [Staphylococcus phage phiSLT]
 gi|21283128|ref|NP_646216.1| protease [Staphylococcus aureus subsp. aureus MW2]
 gi|29028649|ref|NP_803338.1| scaffolding protease [Staphylococcus phage phi 12]
 gi|49485840|ref|YP_043061.1| phage protease [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57651296|ref|YP_185261.1| prophage L54a, Clp protease, putative [Staphylococcus aureus subsp.
           aureus COL]
 gi|66395523|ref|YP_239858.1| ORF015 [Staphylococcus phage 42E]
 gi|66395672|ref|YP_240004.1| ORF016 [Staphylococcus phage 47]
 gi|87161020|ref|YP_494099.1| phiSLT ORF257-like protein, putative prophage protease
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|88195249|ref|YP_500052.1| scaffolding protease [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|156603996|ref|YP_001429942.1| putative protease [Staphylococcus phage tp310-2]
 gi|161509680|ref|YP_001575339.1| bacteriophage protease [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|209363589|ref|YP_002268007.1| prohead protease [Staphylococcus phage phi2958PVL]
 gi|215401148|ref|YP_002332403.1| putative scaffold protein [Staphylococcus phage phiSauS-IPLA35]
 gi|253315475|ref|ZP_04838688.1| phiSLT ORF257-like protein, putative prophage protease
           [Staphylococcus aureus subsp. aureus str. CF-Marseille]
 gi|257432454|ref|ZP_05608817.1| scaffolding protease [Staphylococcus aureus subsp. aureus E1410]
 gi|258420298|ref|ZP_05683245.1| scaffolding protease [Staphylococcus aureus A9719]
 gi|258448837|ref|ZP_05696947.1| scaffolding protease [Staphylococcus aureus A6224]
 gi|282911087|ref|ZP_06318889.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282919223|ref|ZP_06326958.1| phage protease [Staphylococcus aureus subsp. aureus C427]
 gi|284024509|ref|ZP_06378907.1| phiSLT ORF257-like protein, putative prophage protease
           [Staphylococcus aureus subsp. aureus 132]
 gi|294848478|ref|ZP_06789224.1| phage protease [Staphylococcus aureus A9754]
 gi|295407559|ref|ZP_06817352.1| phage protease [Staphylococcus aureus A8819]
 gi|296276330|ref|ZP_06858837.1| phiSLT ORF257-like protein, putative prophage protease
           [Staphylococcus aureus subsp. aureus MR1]
 gi|297207829|ref|ZP_06924263.1| bacteriophage protease [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297246589|ref|ZP_06930422.1| phage protease [Staphylococcus aureus A8796]
 gi|297591011|ref|ZP_06949649.1| bacteriophage protease [Staphylococcus aureus subsp. aureus MN8]
 gi|300911915|ref|ZP_07129358.1| bacteriophage protease [Staphylococcus aureus subsp. aureus TCH70]
 gi|12697862|dbj|BAB21734.1| protease [Staphylococcus phage phiSLT]
 gi|18920573|gb|AAL82313.1| scaffolding protease [Staphylococcus phage phi 12]
 gi|21204568|dbj|BAB95264.1| protease [Staphylococcus aureus subsp. aureus MW2]
 gi|49244283|emb|CAG42710.1| phage protease [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57285482|gb|AAW37576.1| prophage L54a, Clp protease, putative [Staphylococcus aureus subsp.
           aureus COL]
 gi|62636016|gb|AAX91127.1| ORF015 [Staphylococcus phage 42E]
 gi|62636096|gb|AAX91207.1| ORF016 [Staphylococcus phage 47]
 gi|87126994|gb|ABD21508.1| phiSLT ORF257-like protein, putative prophage protease
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|87202807|gb|ABD30617.1| scaffolding protease [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|154818082|gb|ABS87509.1| putative protease [Staphylococcus phage tp310-2]
 gi|160368489|gb|ABX29460.1| bacteriophage protease [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|208973090|dbj|BAG74406.1| prohead protease [Staphylococcus phage phi2958PVL]
 gi|215260499|gb|ACJ64629.1| gp40 [Staphylococcus phage phiSauS-IPLA35]
 gi|257283333|gb|EEV13465.1| scaffolding protease [Staphylococcus aureus subsp. aureus E1410]
 gi|257843723|gb|EEV68125.1| scaffolding protease [Staphylococcus aureus A9719]
 gi|257857874|gb|EEV80765.1| scaffolding protease [Staphylococcus aureus A6224]
 gi|282317033|gb|EFB47407.1| phage protease [Staphylococcus aureus subsp. aureus C427]
 gi|282324782|gb|EFB55092.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|294824504|gb|EFG40927.1| phage protease [Staphylococcus aureus A9754]
 gi|294967578|gb|EFG43614.1| phage protease [Staphylococcus aureus A8819]
 gi|296887545|gb|EFH26444.1| bacteriophage protease [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297176547|gb|EFH35812.1| phage protease [Staphylococcus aureus A8796]
 gi|297575897|gb|EFH94613.1| bacteriophage protease [Staphylococcus aureus subsp. aureus MN8]
 gi|300886161|gb|EFK81363.1| bacteriophage protease [Staphylococcus aureus subsp. aureus TCH70]
 gi|302333119|gb|ADL23312.1| caseinolytic phage protease [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|312438083|gb|ADQ77154.1| bacteriophage protease [Staphylococcus aureus subsp. aureus TCH60]
 gi|315128434|gb|EFT84442.1| bacteriophage protease [Staphylococcus aureus subsp. aureus CGS03]
 gi|315197736|gb|EFU28070.1| bacteriophage protease [Staphylococcus aureus subsp. aureus CGS01]
 gi|329729413|gb|EGG65818.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus 21189]
 gi|329730627|gb|EGG67012.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 257

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 68/133 (51%), Gaps = 3/133 (2%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           EI ++INS GG V  G AIY+ ++     I+ +    AAS+ S++  +G+    F   N+
Sbjct: 53  EIDVHINSSGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGD--TIFMHKNS 110

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK-TYEEVEKTLDRDHIMSA 192
            +++H       G A ++ + A  + K     N  Y+        E +++ LD +  ++A
Sbjct: 111 FLMIHNSWVMTVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTA 170

Query: 193 SEACDWGVVDKVL 205
            EA  +G++D++L
Sbjct: 171 EEALSFGLIDEIL 183


>gi|226940692|ref|YP_002795766.1| ATP-dependent Clp protease proteolytic subunit [Laribacter
           hongkongensis HLHK9]
 gi|226715619|gb|ACO74757.1| ATP-dependent Clp protease proteolytic subunit [Laribacter
           hongkongensis HLHK9]
          Length = 252

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 61/135 (45%), Gaps = 12/135 (8%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE-----KGMRFA 129
           I L INSPGG V A  A+   ++  K  I     G AAS  + +  AG+     KG  F 
Sbjct: 69  IHLRINSPGGSVFAARAMEQALREHKARIVVHIDGIAASAATFIAMAGDEIVMNKGAMF- 127

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
                 ++H+     +G A D+ + A  + KI   L + Y    GK  E +   +  +  
Sbjct: 128 ------MIHKAWTWTAGNADDLAKEAGLLAKIDGTLAQTYADRTGKDVETINGWMADETW 181

Query: 190 MSASEACDWGVVDKV 204
            +A EA ++G  DK+
Sbjct: 182 FTADEAVEYGFADKL 196


>gi|196232547|ref|ZP_03131399.1| peptidase S14 ClpP [Chthoniobacter flavus Ellin428]
 gi|196223309|gb|EDY17827.1| peptidase S14 ClpP [Chthoniobacter flavus Ellin428]
          Length = 439

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 63/128 (49%), Gaps = 3/128 (2%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN-SPGGVVTAGMAIYDTMQ 97
           +L +R + + G I    A  +C+++ +   +N    I + I+ SPGG V AG  I ++M 
Sbjct: 201 VLTDRRIPLNGLISPATADFVCSRIDYFNNKNKDWPIFIVIDDSPGGSVMAGNKILESMH 260

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
               P+       AASM + + +   +   +A PNA IL HQ S G  G  ++     ++
Sbjct: 261 SSTAPVYVVVKTFAASMAATIATLAPRS--YAYPNAVILHHQISNGMMGNLTEQREGLKN 318

Query: 158 IVKIKRRL 165
           + +  +R+
Sbjct: 319 LEQWWKRM 326


>gi|66395603|ref|YP_239937.1| ORF015 [Staphylococcus phage 3A]
 gi|62635949|gb|AAX91060.1| ORF015 [Staphylococcus phage 3A]
          Length = 257

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 68/133 (51%), Gaps = 3/133 (2%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           EI ++INS GG V  G AIY+ ++     I+ +    AAS+ S++  +G+    F   N+
Sbjct: 53  EIDVHINSSGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGD--TIFMHKNS 110

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK-TYEEVEKTLDRDHIMSA 192
            +++H       G A ++ + A  + K     N  Y+        E +++ LD +  ++A
Sbjct: 111 FLMIHNSWVMTVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTA 170

Query: 193 SEACDWGVVDKVL 205
            EA  +G++D++L
Sbjct: 171 EEALSFGLIDEIL 183


>gi|294788380|ref|ZP_06753623.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP
           [Simonsiella muelleri ATCC 29453]
 gi|294483811|gb|EFG31495.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP
           [Simonsiella muelleri ATCC 29453]
          Length = 277

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 70/137 (51%), Gaps = 2/137 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I++ INSPGG    G+AIY+ ++     I+   +G AAS  S++  AG+  +      A
Sbjct: 72  DITVSINSPGGNYFDGIAIYNLLRAHPHKITVQVIGDAASAASVIAMAGDNILMGE--GA 129

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H   G   G  +D+    + + ++   + ++YV   GK   E+   +D +  ++A 
Sbjct: 130 FMMIHNCWGVVVGNRADLAESIELMEQLDNAMTKLYVAQSGKDEAEIAAMMDAETWLNAD 189

Query: 194 EACDWGVVDKVLMSRID 210
           EA + G+    L ++ D
Sbjct: 190 EAVECGLATGHLHTKAD 206


>gi|283469602|emb|CAQ48813.1| protease [Staphylococcus aureus subsp. aureus ST398]
 gi|283470729|emb|CAQ49940.1| protease [Staphylococcus aureus subsp. aureus ST398]
          Length = 257

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 68/133 (51%), Gaps = 3/133 (2%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           EI ++INS GG V  G AIY+ ++     I+ +    AAS+ S++  +G+    F   N+
Sbjct: 53  EIDVHINSSGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGD--TIFMHKNS 110

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK-TYEEVEKTLDRDHIMSA 192
            +++H       G A ++ + A  + K     N  Y+        E +++ LD +  ++A
Sbjct: 111 FLMIHNSWVMTVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTA 170

Query: 193 SEACDWGVVDKVL 205
            EA  +G++D++L
Sbjct: 171 EEALSFGLIDEIL 183


>gi|269203617|ref|YP_003282886.1| phage Clp protease [Staphylococcus aureus subsp. aureus ED98]
 gi|262075907|gb|ACY11880.1| phage Clp protease [Staphylococcus aureus subsp. aureus ED98]
          Length = 257

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 68/133 (51%), Gaps = 3/133 (2%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           EI ++INS GG V  G AIY+ ++     I+ +    AAS+ S++  +G+    F   N+
Sbjct: 53  EIDVHINSSGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDA--IFMHKNS 110

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK-TYEEVEKTLDRDHIMSA 192
            +++H       G A ++ + A  + K     N  Y+        E +++ LD +  ++A
Sbjct: 111 FLMIHNSWVMTVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTA 170

Query: 193 SEACDWGVVDKVL 205
            EA  +G++D++L
Sbjct: 171 EEALSFGLIDEIL 183


>gi|254503204|ref|ZP_05115355.1| Clp protease domain protein [Labrenzia alexandrii DFL-11]
 gi|222439275|gb|EEE45954.1| Clp protease domain protein [Labrenzia alexandrii DFL-11]
          Length = 267

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 2/115 (1%)

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           Q+++++ INSPGG   +G+A+Y+ ++     ++   +GQA+S  S++  AG++ +     
Sbjct: 58  QRDVTVNINSPGGNFFSGLAVYNLLRMHSAKVTVNVIGQASSAASVVAMAGDEILM--AD 115

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
            A +++H  SG   G   D +     +  I   + EIY    G     V   +DR
Sbjct: 116 GATLMVHNASGVTIGNKFDTQDATDILTDIDAVMAEIYAARSGADPSTVSGWMDR 170


>gi|157325221|ref|YP_001468643.1| gp4 [Listeria phage B025]
 gi|255520628|ref|ZP_05387865.1| Clp protease domain protein [Listeria monocytogenes FSL J1-175]
 gi|66733227|gb|AAY53044.1| gp4 [Listeria phage B025]
          Length = 249

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 67/132 (50%), Gaps = 2/132 (1%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           + INS GG V AG  IY T++     ++   +G AAS  S++  AG   ++ A P A+++
Sbjct: 45  VVINSGGGDVYAGSEIYSTLKEYAGDVTVKIVGLAASAASVIAMAGNT-VKIA-PTAQLM 102

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +H  S   SG   D +  +  +    + +   Y+   GK   EV + ++ +   +A +A 
Sbjct: 103 IHNVSSVVSGDFRDFQHESDVLENYNKSIASAYMLKSGKAESEVLEFMNAETWFTAEQAK 162

Query: 197 DWGVVDKVLMSR 208
           + G VD+++ + 
Sbjct: 163 EHGFVDEIMFAE 174


>gi|218897608|ref|YP_002446019.1| phage protein [Bacillus cereus G9842]
 gi|218544209|gb|ACK96603.1| phage protein [Bacillus cereus G9842]
          Length = 260

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 2/132 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           ++ + INSPGG V  G  IY  ++     +    +G AAS  S++  A +K +R + P A
Sbjct: 44  DLVVSINSPGGYVHEGSEIYTALKNYPGHVEVQIVGLAASAASVIAMAADK-VRIS-PTA 101

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           +I++H  S    G   D+ + A+ +    R +   YV   GK+ EE+   +  +  M   
Sbjct: 102 QIMIHNASMWNGGDHRDMSKAAEMLKTTDRAIVNAYVIKSGKSEEELLNMMAEETWMGPQ 161

Query: 194 EACDWGVVDKVL 205
           +A +   VD+++
Sbjct: 162 QALENNFVDEIM 173


>gi|114562854|ref|YP_750367.1| peptidase S14, ClpP [Shewanella frigidimarina NCIMB 400]
 gi|114334147|gb|ABI71529.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella
           frigidimarina NCIMB 400]
          Length = 656

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 72/144 (50%), Gaps = 8/144 (5%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM-GQAASMGSLLLSAGEK 124
           L A     +I+ YI S GG V  GMAIY+ +    P   + C+   AASM S++  A + 
Sbjct: 30  LRAMGKVSQINAYIQSGGGDVMDGMAIYNILARW-PCQKSICIESVAASMASVICMAFDT 88

Query: 125 GMRFALP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK--TYEEVE 181
                +P NA +++H   GG  G A D+  +A  + K +  + + Y    G   + E++ 
Sbjct: 89  ---VIMPSNAFLMIHSNWGGAVGTADDLREYADLLDKWRSSMGKAYQDKAGGKLSDEQLG 145

Query: 182 KTLDRDHIMSASEACDWGVVDKVL 205
           +    D  +SA EA D G+ D+V+
Sbjct: 146 QFFKEDTWLSAQEAVDLGLADEVI 169


>gi|229083044|ref|ZP_04215449.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock4-2]
 gi|228700261|gb|EEL52842.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock4-2]
          Length = 234

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 2/132 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           ++ + INSPGG V  G  IY  ++     +    +G AAS  S++  A +K +R + P A
Sbjct: 20  DLVVSINSPGGYVHEGSEIYTALKNYPGHVEVQIVGLAASAASVIAMAADK-VRIS-PTA 77

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           +I++H  S    G   D+ + A+ +    R +   YV   GK+ EE+   +  +  M   
Sbjct: 78  QIMIHNASMWNGGDHRDMSKAAEMLKTTDRAIVNAYVIKSGKSEEELLNMMAEETWMGPQ 137

Query: 194 EACDWGVVDKVL 205
           +A +   VD+++
Sbjct: 138 QALENNFVDEIM 149


>gi|229150843|ref|ZP_04279055.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           m1550]
 gi|228632632|gb|EEK89249.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           m1550]
          Length = 254

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 2/132 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           ++ + INSPGG V  G  IY  ++     +    +G AAS  S++  A +K +R + P A
Sbjct: 38  DLVVSINSPGGYVHEGSEIYTALKNYPGHVEVQIVGLAASAASVIAMAADK-VRIS-PTA 95

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           +I++H  S    G   D+ + A+ +    R +   YV   GK+ EE+   +  +  M   
Sbjct: 96  QIMIHNASMWNGGDYRDMSKAAEMLKTTDRAIVNAYVIKSGKSEEELLNMMAEETWMGPQ 155

Query: 194 EACDWGVVDKVL 205
           +A +   VD+++
Sbjct: 156 QALENNFVDEIM 167


>gi|161899607|ref|XP_001713029.1| Clp protease [Bigelowiella natans]
 gi|75756524|gb|ABA27417.1| Clp protease [Bigelowiella natans]
          Length = 204

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 63/115 (54%), Gaps = 5/115 (4%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSP-----GG 84
           ++ YDI S++ ++ I+F+   I   +  L+ +Q++FL      ++  ++IN+P       
Sbjct: 31  KKFYDISSKIYEKNIIFIGQPINTFIVQLLISQVIFLFMNRKNEKNRIFINTPYQTKNNF 90

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           + T+ + +Y+ +Q I+   S++ +G       L+LS+G K  R+ L N+ +L  +
Sbjct: 91  LYTSDLYLYNFLQTIRFEYSSYNIGLCNYDIGLILSSGIKSNRYGLKNSIVLFTE 145


>gi|160946055|ref|ZP_02093275.1| hypothetical protein PEPMIC_00010 [Parvimonas micra ATCC 33270]
 gi|158447859|gb|EDP24854.1| hypothetical protein PEPMIC_00010 [Parvimonas micra ATCC 33270]
          Length = 170

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 64/119 (53%), Gaps = 4/119 (3%)

Query: 89  GMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQA 148
           G+AI + ++  K  ++ +  G AAS+ S++  +G+    F   NA +++H P     G A
Sbjct: 4   GIAIGNMIKQHKAQVNCYIDGVAASIASVIAMSGDA--IFMPSNAMLMVHNPWSFAYGNA 61

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKT--YEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           SD  + A ++  I   + + Y++  G     E + + +D +  MSA EA ++G+ D+VL
Sbjct: 62  SDFRKQADNLDHIADSIKQTYLEKAGDKLDLETITQLMDAETWMSAQEAFEYGLCDQVL 120


>gi|295402312|ref|ZP_06812267.1| peptidase S14 ClpP [Geobacillus thermoglucosidasius C56-YS93]
 gi|294975585|gb|EFG51208.1| peptidase S14 ClpP [Geobacillus thermoglucosidasius C56-YS93]
          Length = 242

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 67/133 (50%), Gaps = 2/133 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K+I+++I+S GG V A   IY+ ++     I+     +A S  S++  AG++ +    P 
Sbjct: 59  KDITVWIDSYGGSVFAAAGIYNALKEHDGRITVKIDSKAMSAASVIAMAGDEVLMS--PM 116

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A +++H P     G   D+ + A  +  +K  L   YV   G++  ++ + +D +  MSA
Sbjct: 117 AVMMIHNPLTAAYGNMHDLRKIADILDTVKESLINAYVLKTGRSRSKISQMMDDETWMSA 176

Query: 193 SEACDWGVVDKVL 205
           + A   G  D +L
Sbjct: 177 NVAVKEGFADGIL 189


>gi|325478747|gb|EGC81858.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 228

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 71/150 (47%), Gaps = 2/150 (1%)

Query: 59  ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLL 118
           I  +L F E +N   +I+++INSPGG   A   IY  +   K  ++    G AAS  S++
Sbjct: 33  ITPRLFFEELKNKSGDITVWINSPGGDCIAASRIYTMLLEHKGNVTIKIDGLAASAASVI 92

Query: 119 LSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYE 178
             AG + +    P + +++H P     G + ++++    + ++K  +   Y    G + E
Sbjct: 93  AMAGTEVL--MSPTSLMMIHNPLTVAIGDSKEMQKAIDMLKEVKESIINAYEIKTGLSRE 150

Query: 179 EVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+   +D +     ++A + G  D  L  +
Sbjct: 151 EISNLMDGETWFDKNKAIEMGFCDGTLTDK 180


>gi|229181873|ref|ZP_04309181.1| Peptidase S14 ClpP [Bacillus cereus 172560W]
 gi|228601671|gb|EEK59184.1| Peptidase S14 ClpP [Bacillus cereus 172560W]
          Length = 247

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 69/133 (51%), Gaps = 4/133 (3%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP- 131
           ++I ++INS GG    G+AI + ++     I     G AAS  S++  AG+K     +P 
Sbjct: 56  EKIHVHINSGGGSAFDGVAICNQLKQHSAEIIVHIDGWAASAASVIAMAGDK---IIMPS 112

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N  +++HQ S    G A   E+ A+++ KI   L   Y K    T EE+++ L  +  ++
Sbjct: 113 NTMMMIHQASTFEYGNADLFEKTARNLRKIDSALAASYKKRFVGTDEELKQLLKDETWLT 172

Query: 192 ASEACDWGVVDKV 204
           A EA   G+ D++
Sbjct: 173 AEEAVALGLADEI 185


>gi|307271305|ref|ZP_07552584.1| Clp protease [Enterococcus faecalis TX0855]
 gi|306512054|gb|EFM81045.1| Clp protease [Enterococcus faecalis TX0855]
          Length = 254

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 73/149 (48%), Gaps = 7/149 (4%)

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           L  L A N   E++  INS GG+V  G  IY  ++  +  +    +  A S  S++  AG
Sbjct: 34  LDLLPANNEDVEVT--INSNGGLVDMGNEIYTALRSYEGHVKVNIV-MAGSAASIIAMAG 90

Query: 123 EKGMRFAL-PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVE 181
            K    A+ P  +I++H  + G  G    +++ ++ + K  + L   YV   GK  EE+ 
Sbjct: 91  NK---VAISPVGQIMIHNVAMGAGGDYHTMDKASEILQKANKSLANAYVSKTGKAKEEIL 147

Query: 182 KTLDRDHIMSASEACDWGVVDKVLMSRID 210
             +D++  ++A EA + G  D+++    +
Sbjct: 148 ALMDKETWLTAEEAVENGFADEIMFENTE 176


>gi|148747731|ref|YP_001285810.1| putative Clp peptidase [Geobacillus virus E2]
 gi|113715673|gb|ABI36822.1| putative Clp peptidase [Geobacillus virus E2]
          Length = 243

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 66/133 (49%), Gaps = 2/133 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K+I+++I+S GG V A   IY+ ++     I+     +A S  S++  AG++ +    P 
Sbjct: 60  KDITVWIDSYGGSVFAAAGIYNALKEHNGKITVKIDSKAMSAASVIAMAGDEVLMS--PM 117

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A +++H P     G   D+ + A  +  IK  +   Y    G++  ++ + +D +  MSA
Sbjct: 118 AVMMIHNPLTAAYGNMHDLRKAADILDTIKESIVNAYALKTGRSRSKISQMMDDETWMSA 177

Query: 193 SEACDWGVVDKVL 205
           + A   G  D +L
Sbjct: 178 NVAVKEGFADGIL 190


>gi|71898021|ref|ZP_00680226.1| Peptidase S14, ClpP [Xylella fastidiosa Ann-1]
 gi|71732265|gb|EAO34320.1| Peptidase S14, ClpP [Xylella fastidiosa Ann-1]
          Length = 771

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 7/134 (5%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I + INS GGVV+ G+AIY+ +      I     G AAS+ SL+  AG    R   PN+ 
Sbjct: 77  IHVRINSNGGVVSDGLAIYNALTAHPATIHVTIDGVAASIASLIAQAGT--TRRVYPNSL 134

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTY-EEVEKTLD--RDHIMS 191
           +++H P     G A D+   A  +  +   ++  Y    G T+ E + + L+   DH ++
Sbjct: 135 MMIHGPQTSGWGFAEDLRHTAAMLDTMAAAMHTAYTT--GATHPEAIRRMLNDGHDHWLT 192

Query: 192 ASEACDWGVVDKVL 205
           A +    G+ D ++
Sbjct: 193 AQDMIAAGLADTII 206


>gi|297587079|ref|ZP_06945724.1| peptidase S14, ClpP [Finegoldia magna ATCC 53516]
 gi|297575060|gb|EFH93779.1| peptidase S14, ClpP [Finegoldia magna ATCC 53516]
          Length = 228

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 71/150 (47%), Gaps = 2/150 (1%)

Query: 59  ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLL 118
           I  +L F E +N   +I+++INSPGG   A   IY  +   K  ++    G AAS  S++
Sbjct: 33  ITPRLFFEELKNKSGDITVWINSPGGDCIAASRIYTMLLEHKGNVAIKIDGLAASAASVI 92

Query: 119 LSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYE 178
             AG + +    P + +++H P     G + ++++    + ++K  +   Y    G + E
Sbjct: 93  AMAGTEVL--MSPTSLMMIHNPLTVAIGDSKEMQKAMDMLKEVKESIINAYEIKTGLSRE 150

Query: 179 EVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+   +D +     ++A + G  D  L  +
Sbjct: 151 EISNLMDGETWFDKNKAIEMGFCDGTLTDK 180


>gi|256617098|ref|ZP_05473944.1| peptidase S14 [Enterococcus faecalis ATCC 4200]
 gi|256596625|gb|EEU15801.1| peptidase S14 [Enterococcus faecalis ATCC 4200]
          Length = 198

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 2/130 (1%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I+++INSPGG   A   IY+ ++     ++    G AAS  S++  AG+K +    P A 
Sbjct: 7   ITVWINSPGGDCVAAAQIYNMLKEYSGDVTIKIDGLAASAASVIAMAGDKVVMS--PVAM 64

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           +++H PS    G   D+++    + ++K  +   Y    G +  ++   +D +  M A  
Sbjct: 65  MMIHNPSTVAFGDRVDMQKAMAMLDEVKESIINAYEIKTGMSRTKLAHMMDAETWMDARS 124

Query: 195 ACDWGVVDKV 204
           A D G  D V
Sbjct: 125 AVDLGFADDV 134


>gi|170723514|ref|YP_001751202.1| peptidase S14 ClpP [Pseudomonas putida W619]
 gi|169761517|gb|ACA74833.1| peptidase S14 ClpP [Pseudomonas putida W619]
          Length = 620

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 71/146 (48%), Gaps = 9/146 (6%)

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLL-LSAGEKGMRFAL 130
           Q  I++ INSPGG VT  +AIY  ++     ++    G  AS  +L+ L+A E  M    
Sbjct: 24  QMPITVQINSPGGSVTDALAIYTVLRKHTGRVTAIVDGLCASAATLVALAADEIVM---A 80

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
            ++ +++H P    SG A ++ + A  +    R +  +Y +  G + E++   +  +   
Sbjct: 81  EHSLMMVHNPWTVASGDADEMRKTADTLDVASREMTALYTERTGLSAEKITAIMGAETWF 140

Query: 191 SASEACDWGVVDKVLMSRIDIEEKSK 216
           ++ EA D G        R+D  E+SK
Sbjct: 141 NSYEAVDAG-----FAHRVDNSERSK 161


>gi|9632423|ref|NP_049395.1| putative scaffolding protein [Streptococcus phage DT1]
 gi|4530143|gb|AAD21883.1| putative scaffolding protein [Streptococcus phage DT1]
          Length = 222

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 2/133 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           +EI+L I S GG V A   IY  ++     I     G AAS  S++  AG   +R + P 
Sbjct: 42  EEITLNIASNGGDVFAASEIYTMLRDSGKRIVVNIQGLAASAASVISMAGNT-VRIS-PT 99

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A I++H+ S GF G + D+E  +  +  I   +   Y    G    E+ + + ++  ++A
Sbjct: 100 AHIMIHKASSGFVGNSDDMEHQSVVLNSIDESIALAYEMKTGLKQSELLELMAKETWLNA 159

Query: 193 SEACDWGVVDKVL 205
             A D G  D+++
Sbjct: 160 KTAVDKGFADEIM 172


>gi|320587789|gb|EFX00264.1| ATP-dependent clp protease proteolytic subunit [Grosmannia
          clavigera kw1407]
          Length = 148

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 36/49 (73%)

Query: 36 YSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG 84
          Y   + ERI+ + G ++D ++  I AQLL+LE++ P+K I++YINSPGG
Sbjct: 42 YITEVTERIICLNGPVDDTVSAAIVAQLLWLESDAPEKPITMYINSPGG 90


>gi|84662599|ref|YP_453564.1| ClpP family protein [Xanthomonas phage OP1]
 gi|84570648|dbj|BAE72711.1| ClpP family protein [Xanthomonas oryzae phage OP1]
          Length = 245

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 74/142 (52%), Gaps = 5/142 (3%)

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           FLEA  P  ++++ I+SPGG + AG+AIY+ +   +  ++   +G+AAS  S++  +G++
Sbjct: 66  FLEAMGP-GDVTVNIDSPGGDMFAGLAIYNQLIAHQGKVTVNVVGRAASAASVIAMSGDQ 124

Query: 125 -GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
             M     +A +++H       G A ++   A  +      + +IYV    +  + V + 
Sbjct: 125 INMH---TSAFLMIHNCHLVIGGNAKELMSVAAMMEPFDSAMADIYVARSSQAKDTVVQM 181

Query: 184 LDRDHIMSASEACDWGVVDKVL 205
           +D +  M+A EA   G  D ++
Sbjct: 182 MDNETWMNAEEAVKMGFADSIV 203


>gi|307285457|ref|ZP_07565596.1| Clp protease [Enterococcus faecalis TX0860]
 gi|306502681|gb|EFM71946.1| Clp protease [Enterococcus faecalis TX0860]
          Length = 257

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 73/149 (48%), Gaps = 5/149 (3%)

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           +L L   N  +++ + INS GG+V  G  IY  ++  +  +    +  A S  S++  AG
Sbjct: 35  VLDLLPANHNEDVEVTINSYGGLVDMGNEIYTALRSYEGHVKVNVV-MAGSAASIIAMAG 93

Query: 123 EKGMRFAL-PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVE 181
                 A+ P  +I++H  + G  G    +++ ++ + K    L   YV   GK  EE+ 
Sbjct: 94  N---TVAISPVGQIMIHNVAMGAGGDYHTMDKASEILQKANNSLANAYVSKTGKAKEEIL 150

Query: 182 KTLDRDHIMSASEACDWGVVDKVLMSRID 210
             +D++  ++A EA + G VD+++    +
Sbjct: 151 ALMDKETWLTAEEAVENGFVDEIMFENTE 179


>gi|255974949|ref|ZP_05425535.1| clp protease domain-containing protein [Enterococcus faecalis T2]
 gi|255967821|gb|EET98443.1| clp protease domain-containing protein [Enterococcus faecalis T2]
          Length = 253

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 73/149 (48%), Gaps = 5/149 (3%)

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           +L L   N  +++ + INS GG+V  G  IY  ++  +  +    +  A S  S++  AG
Sbjct: 31  VLDLLPANHNEDVEVTINSYGGLVDMGNEIYTALRSYEGHVKVNVV-MAGSAASIIAMAG 89

Query: 123 EKGMRFAL-PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVE 181
                 A+ P  +I++H  + G  G    +++ ++ + K    L   YV   GK  EE+ 
Sbjct: 90  N---TVAISPVGQIMIHNVAMGAGGDYHTMDKASEILQKANNSLANAYVSKTGKAKEEIL 146

Query: 182 KTLDRDHIMSASEACDWGVVDKVLMSRID 210
             +D++  ++A EA + G VD+++    +
Sbjct: 147 ALMDKETWLTAEEAVENGFVDEIMFENTE 175


>gi|315162197|gb|EFU06214.1| Clp protease [Enterococcus faecalis TX0645]
          Length = 257

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 74/151 (49%), Gaps = 9/151 (5%)

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP--PISTFCMGQAASMGSLLLS 120
           +L L   N  +++ + INS GG+V  G  IY  ++  +    +S    G AAS+ ++   
Sbjct: 35  VLDLLPANHNEDVEVTINSNGGLVDMGNEIYTALRSYEGHVKVSIVMAGSAASIIAM--- 91

Query: 121 AGEKGMRFAL-PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
               G   A+ P  +I++H  + G  G    +++ ++ + K  + L   YV   GK  EE
Sbjct: 92  ---AGNTVAISPVGQIMIHNVAMGAGGDYHTMDKASEILQKANKSLANAYVSKTGKAKEE 148

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           +   +D++  ++A EA + G  D+++    +
Sbjct: 149 ILALMDKETWLTAEEAVENGFADEIMFENTE 179


>gi|148727186|ref|YP_001285678.1| p08 [Xanthomonas phage Xop411]
 gi|116583486|gb|ABK00156.1| p08 [Xanthomonas phage Xop411]
          Length = 245

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 74/142 (52%), Gaps = 5/142 (3%)

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           FLEA  P  ++++ I+SPGG + AG+AIY+ +   +  ++   +G+AAS  S++  +G++
Sbjct: 66  FLEAMGP-GDVTVNIDSPGGDMFAGLAIYNQLIAHQGKVTVNVVGRAASAASVIAMSGDQ 124

Query: 125 -GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
             M     +A +++H       G A ++   A  +      + +IYV    +  + V + 
Sbjct: 125 INMH---TSAFLMIHNCHLVIGGNAKELMSVAAMMRPFDSAMADIYVARSSQAKDTVVQM 181

Query: 184 LDRDHIMSASEACDWGVVDKVL 205
           +D +  M+A EA   G  D ++
Sbjct: 182 MDNETWMNAEEAVKMGFADSIV 203


>gi|227498309|ref|ZP_03928459.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226903771|gb|EEH89689.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 235

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 77/168 (45%), Gaps = 4/168 (2%)

Query: 43  RIVFVTGQIEDH--MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           R +++ GQI D       +  +    E      +I+L+INSPGG   A   IY+ +    
Sbjct: 21  RTLYLDGQISDETWWGDEVTPKAFKDELNAGSGDITLWINSPGGDCFAAAQIYNLLMDYP 80

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
             ++    G AAS  S++  AG K      P A +++H P+    G  +++E+    + +
Sbjct: 81  GNVTVKIDGLAASAASVIAMAGTK--VCMSPVAMLMIHNPATLAYGDQAEMEKTIGMLSE 138

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           +K  +   Y    G    ++   +D +  ++A +A + G  D++L  +
Sbjct: 139 VKESIINAYEIKSGLARTKISHMMDDETWLNAKKAVELGFADEILFDQ 186


>gi|124009662|ref|ZP_01694334.1| Clp protease domain protein [Microscilla marina ATCC 23134]
 gi|123984712|gb|EAY24697.1| Clp protease domain protein [Microscilla marina ATCC 23134]
          Length = 429

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 76/142 (53%), Gaps = 14/142 (9%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPP-----ISTFCMGQAASMGSLLLSAGEK-GM 126
           + I++ INSPGG +T G++I   +  I        I T+  G A S+  L+   G+K GM
Sbjct: 51  RRINVRINSPGGKITDGLSICAAILNINQSTPNVRIDTYVDGLALSIAGLIAVCGKKVGM 110

Query: 127 -RFALPNARILLHQPS-GGFSG-QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
             F    A+++LH P  GG +G Q   IE+H + ++++K  L  +     G+  E++   
Sbjct: 111 CNF----AKLMLHNPFIGGKNGTQNGGIEQH-ETLMQVKEMLLTLLATRTGQKVEDLSLM 165

Query: 184 LDRDHIMSASEACDWGVVDKVL 205
           +++   +SA+EA   G VD+V 
Sbjct: 166 MNQTTWLSAAEAKRQGFVDEVF 187


>gi|295108195|emb|CBL22148.1| Protease subunit of ATP-dependent Clp proteases [Ruminococcus obeum
           A2-162]
          Length = 87

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 3/68 (4%)

Query: 136 LLHQPS---GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           ++HQPS    G  GQA+DI+  +  + K K RLN I  +N G+T EEV    +R + +SA
Sbjct: 1   MIHQPSIHRNGVQGQATDIKIVSDQLQKSKLRLNRILAENTGRTIEEVVMATERYNFLSA 60

Query: 193 SEACDWGV 200
            EA D+G+
Sbjct: 61  GEALDFGL 68


>gi|126461414|ref|YP_001042528.1| peptidase S14, ClpP [Rhodobacter sphaeroides ATCC 17029]
 gi|126103078|gb|ABN75756.1| peptidase S14, ClpP [Rhodobacter sphaeroides ATCC 17029]
          Length = 282

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 68/145 (46%), Gaps = 9/145 (6%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A  P +++ + INSPGG V  G+AIY  ++  K  ++   +G AAS  S++  A +  
Sbjct: 69  LRAIGP-RDVVVNINSPGGDVFEGLAIYSLLREHKGHVTVKVLGLAASAASVIAMAADD- 126

Query: 126 MRFALPNAR---ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
               L  AR   +++H    G +G    +   A  +      L +IY    G +  E+  
Sbjct: 127 ----LLIARAGFLMIHNTWVGAAGDRHALREAADLLEPFDAALADIYAARSGVSAAEISA 182

Query: 183 TLDRDHIMSASEACDWGVVDKVLMS 207
            LD++  M  SEA   G  D +L S
Sbjct: 183 MLDKETWMGGSEAIAAGFADGLLSS 207


>gi|298375375|ref|ZP_06985332.1| ATP-dependent Clp protease proteolytic subunit 2 (Endopeptidase Clp
           2) [Bacteroides sp. 3_1_19]
 gi|298267875|gb|EFI09531.1| ATP-dependent Clp protease proteolytic subunit 2 (Endopeptidase Clp
           2) [Bacteroides sp. 3_1_19]
          Length = 438

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 13/149 (8%)

Query: 51  IEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQ 110
           I+++ A    ++ L++E+     +I + INS GG V  GM+I+  ++    P      G 
Sbjct: 27  IDEYTANSFNSEFLWVESYIKPSKIRVLINSSGGSVLYGMSIFSVIRNSSIPTECINEGL 86

Query: 111 AASMGSLLLSAGEKG-MR-FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           AASMGS++ +AG+K  MR +A+    +++H P    +    D E     +   ++++  I
Sbjct: 87  AASMGSIVWAAGDKSLMRDYAI----LMIHNPFDS-TEDNKDTEGEPDYVKAFRQQIEMI 141

Query: 169 YVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           Y+K  G    +V+       +MS  E  D
Sbjct: 142 YMKRWGFNKTKVK------ELMSGKEGTD 164


>gi|254503874|ref|ZP_05116025.1| Clp protease domain protein [Labrenzia alexandrii DFL-11]
 gi|222439945|gb|EEE46624.1| Clp protease domain protein [Labrenzia alexandrii DFL-11]
          Length = 342

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 4/134 (2%)

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK-GMRFAL 130
           Q ++++ +NS GG V  G +IY+ ++     ++ F  G AAS  SL+  AG+K  MR   
Sbjct: 39  QNDLTVRLNSGGGYVDDGRSIYNALKVHGGDVTVFVDGVAASSASLIAMAGDKIVMR--- 95

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
             A +++H P+    G A D +   Q + +      + Y    G   ++V   +     M
Sbjct: 96  SGALMMIHDPATITVGTADDHDVSKQALERTAESFADTYAARSGNDAKDVRAAMKATTWM 155

Query: 191 SASEACDWGVVDKV 204
           +A EA   G  D+ 
Sbjct: 156 TADEAVAAGYADEA 169


>gi|254555672|ref|YP_003062089.1| Clp protease domain protein [Lactobacillus plantarum JDM1]
 gi|254044599|gb|ACT61392.1| Clp protease domain protein [Lactobacillus plantarum JDM1]
          Length = 247

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 67/131 (51%), Gaps = 2/131 (1%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           + + INS GG++ AG  IY  +   +  +    +G AAS  SL+  AG    R + P  +
Sbjct: 43  VEVDINSGGGLMDAGTEIYTALMAYQGKVMVNIVGMAASSASLIAMAGNP-TRIS-PVGQ 100

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++H  +GG  G   D  + ++ + +    +   Y    G + E+++  +D +  ++A +
Sbjct: 101 IMIHNVAGGLRGDYRDQAKLSEILKQSSEAIANAYHLKTGLSMEDLQAKMDSETYLNADQ 160

Query: 195 ACDWGVVDKVL 205
           A + G VD+++
Sbjct: 161 AKELGFVDEIM 171


>gi|50914485|ref|YP_060457.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes MGAS10394]
 gi|40218571|gb|AAR83225.1| phage portal protein [Streptococcus pyogenes]
 gi|50261616|gb|AAT72384.1| protease [Streptococcus pyogenes]
 gi|50903559|gb|AAT87274.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes MGAS10394]
          Length = 228

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 83/166 (50%), Gaps = 4/166 (2%)

Query: 42  ERIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           ER +F+ G I  E      +  QL   E  + Q +I+L+INSPGG V A   IY+ +   
Sbjct: 13  ERTLFLNGVIASESWFGDEVTPQLFKDELLSEQGDITLWINSPGGDVFAAAQIYNMLMDY 72

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
           K  ++    G AAS  S++  AG   +    P + +++H P+   SG   ++E+  Q + 
Sbjct: 73  KGAVTVNIDGIAASAASVIAMAGT--IVNMSPVSMMMIHNPATFASGDKREMEKAIQLLN 130

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           ++K  +   Y      + +++   +D +  ++A +A + G  D+++
Sbjct: 131 EVKESIINAYEIKTSLSRQKLSNLMDGETWLNAKKAVELGFADQII 176


>gi|304379157|ref|ZP_07361902.1| S14 family endopeptidase ClpP [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|304342272|gb|EFM08166.1| S14 family endopeptidase ClpP [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
          Length = 247

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 74/143 (51%), Gaps = 2/143 (1%)

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
           C + +  + E   +++ + INS GG + AG  IY  ++  K  ++      AAS  SL+ 
Sbjct: 29  CPKDVLTQLEFSDEDVDIIINSNGGNLVAGSEIYTHLRAHKGKVNVRITAIAASAASLIA 88

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
            AG+  +  + P AR+++H PS    G+A D+   A+ +  + + + E Y    GK  +E
Sbjct: 89  MAGDH-IEMS-PVARMMIHNPSSIAQGEAKDLNHAAETLEHVGQIMAEAYAVRAGKNKQE 146

Query: 180 VEKTLDRDHIMSASEACDWGVVD 202
           + + + R+  ++A EA + G  D
Sbjct: 147 LVEMMARETWLNADEAIEQGFAD 169


>gi|332174255|gb|AEE23509.1| peptidase S14 ClpP [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 241

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 71/142 (50%), Gaps = 5/142 (3%)

Query: 65  FLEAENPQK-EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           F +  N Q+  I ++INS GGVVT G+AIY+ ++      +      AASM S++  AG+
Sbjct: 32  FKDELNKQRGAIEVHINSAGGVVTEGIAIYNALKAYTGKKTVIIDSLAASMASVIAMAGD 91

Query: 124 KGMRFALP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
                 +P N  +++H P G  SGQA++  + A  +  +K  +   Y+        ++ +
Sbjct: 92  ---VVQMPSNGLMMIHNPWGVSSGQATEHRKTADLLDVMKDAMLAAYMLKTNLDEAQLSE 148

Query: 183 TLDRDHIMSASEACDWGVVDKV 204
            +D +  M+  +    G +D +
Sbjct: 149 LMDGETWMNGEDCLKLGFIDTL 170


>gi|282904631|ref|ZP_06312506.1| putative Clp protease [Staphylococcus aureus subsp. aureus C160]
 gi|282594880|gb|EFB99856.1| putative Clp protease [Staphylococcus aureus subsp. aureus C160]
          Length = 245

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 74/143 (51%), Gaps = 2/143 (1%)

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
           C + +  + E   +++ + INS GG + AG  IY  ++  K  ++      AAS  SL+ 
Sbjct: 27  CPKDVLTQLEFSDEDVDIIINSNGGNLVAGSEIYTHLRAHKGKVNVRITAIAASAASLIA 86

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
            AG+  +  + P AR+++H PS    G+A D+   A+ +  + + + E Y    GK  +E
Sbjct: 87  MAGDH-IEMS-PVARMMIHNPSSIAQGEAKDLNHAAETLEHVGQIMAEAYAVRAGKNKQE 144

Query: 180 VEKTLDRDHIMSASEACDWGVVD 202
           + + + R+  ++A EA + G  D
Sbjct: 145 LVEMMARETWLNADEAIEQGFAD 167


>gi|302751864|gb|ADL66041.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus str. JKD6008]
          Length = 243

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 74/143 (51%), Gaps = 2/143 (1%)

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
           C + +  + E   +++ + INS GG + AG  IY  ++  K  ++      AAS  SL+ 
Sbjct: 25  CPKDVLTQLEFSDEDVDIIINSNGGNLVAGSEIYTHLRAHKGKVNVRITAIAASAASLIA 84

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
            AG+  +  + P AR+++H PS    G+A D+   A+ +  + + + E Y    GK  +E
Sbjct: 85  MAGDH-IEMS-PVARMMIHNPSSIAQGEAKDLNHAAETLEHVGQIMAEAYAVRAGKNKQE 142

Query: 180 VEKTLDRDHIMSASEACDWGVVD 202
           + + + R+  ++A EA + G  D
Sbjct: 143 LVEMMARETWLNADEAIEQGFAD 165


>gi|253734912|ref|ZP_04869077.1| S14 family endopeptidase ClpP [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|297589979|ref|ZP_06948619.1| S14 family endopeptidase ClpP [Staphylococcus aureus subsp. aureus
           MN8]
 gi|253727094|gb|EES95823.1| S14 family endopeptidase ClpP [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|297577107|gb|EFH95821.1| S14 family endopeptidase ClpP [Staphylococcus aureus subsp. aureus
           MN8]
 gi|320142431|gb|EFW34245.1| Clp protease [Staphylococcus aureus subsp. aureus MRSA177]
          Length = 247

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 74/143 (51%), Gaps = 2/143 (1%)

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
           C + +  + E   +++ + INS GG + AG  IY  ++  K  ++      AAS  SL+ 
Sbjct: 29  CPKDVLTQLEFSDEDVDIIINSNGGNLVAGSEIYTHLRAHKGKVNVRITAIAASAASLIA 88

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
            AG+  +  + P AR+++H PS    G+A D+   A+ +  + + + E Y    GK  +E
Sbjct: 89  MAGDH-IEMS-PVARMMIHNPSSIAQGEAKDLNHAAETLEHVGQIMAEAYAVRAGKNKQE 146

Query: 180 VEKTLDRDHIMSASEACDWGVVD 202
           + + + R+  ++A EA + G  D
Sbjct: 147 LVEMMARETWLNADEAIEQGFAD 169


>gi|221140568|ref|ZP_03565061.1| endopeptidase ClpP [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|257136405|ref|YP_003169679.1| protease/scaffold protein [Staphylococcus phage P954]
 gi|258450637|ref|ZP_05698698.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|282909284|ref|ZP_06317100.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|283958726|ref|ZP_06376172.1| putative Clp protease [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|284025012|ref|ZP_06379410.1| phi77 ORF015-like protein, putative protease [Staphylococcus aureus
           subsp. aureus 132]
 gi|256681247|gb|ACV04990.1| protease/scaffold protein [Staphylococcus phage P954]
 gi|257861637|gb|EEV84437.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|269941434|emb|CBI49831.1| putative Clp protease [Staphylococcus aureus subsp. aureus TW20]
 gi|282326852|gb|EFB57149.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|283789766|gb|EFC28588.1| putative Clp protease [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|302333628|gb|ADL23821.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus JKD6159]
 gi|329314644|gb|AEB89057.1| S14 family endopeptidase ClpP [Staphylococcus aureus subsp. aureus
           T0131]
          Length = 245

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 74/143 (51%), Gaps = 2/143 (1%)

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
           C + +  + E   +++ + INS GG + AG  IY  ++  K  ++      AAS  SL+ 
Sbjct: 27  CPKDVLTQLEFSDEDVDIIINSNGGNLVAGSEIYTHLRAHKGKVNVRITAIAASAASLIA 86

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
            AG+  +  + P AR+++H PS    G+A D+   A+ +  + + + E Y    GK  +E
Sbjct: 87  MAGDH-IEMS-PVARMMIHNPSSIAQGEAKDLNHAAETLEHVGQIMAEAYAVRAGKNKQE 144

Query: 180 VEKTLDRDHIMSASEACDWGVVD 202
           + + + R+  ++A EA + G  D
Sbjct: 145 LVEMMARETWLNADEAIEQGFAD 167


>gi|282917312|ref|ZP_06325067.1| Clp protease [Staphylococcus aureus subsp. aureus D139]
 gi|282318939|gb|EFB49294.1| Clp protease [Staphylococcus aureus subsp. aureus D139]
          Length = 245

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 74/143 (51%), Gaps = 2/143 (1%)

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
           C + +  + E   +++ + INS GG + AG  IY  ++  K  ++      AAS  SL+ 
Sbjct: 27  CPKDVLTQLEFSDEDVDIIINSNGGNLVAGSEIYTHLRAHKGKVNVRITAIAASAASLIA 86

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
            AG+  +  + P AR+++H PS    G+A D+   A+ +  + + + E Y    GK  +E
Sbjct: 87  MAGDH-IEMS-PVARMMIHNPSSIAQGEAKDLNHAAETLEHVGQIMAEAYAVRAGKNKQE 144

Query: 180 VEKTLDRDHIMSASEACDWGVVD 202
           + + + R+  ++A EA + G  D
Sbjct: 145 LVEMMARETWLNADEAIEQGFAD 167


>gi|256392039|ref|YP_003113603.1| peptidase S14 ClpP [Catenulispora acidiphila DSM 44928]
 gi|256358265|gb|ACU71762.1| peptidase S14 ClpP [Catenulispora acidiphila DSM 44928]
          Length = 564

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 72/146 (49%), Gaps = 3/146 (2%)

Query: 59  ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLL 118
           + AQ    E +     I L++NSPGG V  G+AI+  +   +  ++T+    AAS+ S++
Sbjct: 46  VTAQDFIDEMKQVDGPIDLHLNSPGGEVWDGIAIHAYLSG-RGGVTTYVDALAASIASVI 104

Query: 119 LSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYE 178
             AGE+ +     NA +++H   G   G A+D+   A+ + ++   +  IY    GK  +
Sbjct: 105 AMAGEQIVMGR--NASLMIHDGWGLVIGNAADMREQAELLDRVSDNIASIYADRTGKPKD 162

Query: 179 EVEKTLDRDHIMSASEACDWGVVDKV 204
           +    +  +      EA D G+ D++
Sbjct: 163 DWRAAMLAETWYIGQEAVDAGLADRM 188


>gi|253729750|ref|ZP_04863915.1| S14 family endopeptidase ClpP [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253726485|gb|EES95214.1| S14 family endopeptidase ClpP [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 247

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 74/143 (51%), Gaps = 2/143 (1%)

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
           C + +  + E   +++ + INS GG + AG  IY  ++  K  ++      AAS  SL+ 
Sbjct: 29  CPKDVLTQLEFSDEDVDIIINSNGGNLVAGSEIYTHLRAHKGKVNVRITAIAASAASLIA 88

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
            AG+  +  + P AR+++H PS    G+A D+   A+ +  + + + E Y    GK  +E
Sbjct: 89  MAGDH-IEMS-PVARMMIHNPSSIAQGEAKDLNHAAETLEHVGQIMAEAYAVRAGKNKQE 146

Query: 180 VEKTLDRDHIMSASEACDWGVVD 202
           + + + R+  ++A EA + G  D
Sbjct: 147 LVEMMARETWLNADEAIEQGFAD 169


>gi|313891822|ref|ZP_07825427.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP-like
           protein [Dialister microaerophilus UPII 345-E]
 gi|313119816|gb|EFR43003.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP-like
           protein [Dialister microaerophilus UPII 345-E]
          Length = 249

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 69/126 (54%), Gaps = 4/126 (3%)

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K I++YINS GG V AG+AI + ++  K   +    G   S+ + +  + ++  R    
Sbjct: 49  EKPITVYINSDGGSVPAGVAIANMLKRHKAKTTAVIDGWCCSIATQIFFSCQE--RQIPK 106

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK--TYEEVEKTLDRDHI 189
           NA +++H+PS    G A+++ + A+ +  I++ L E+Y     +  T E++ K ++++  
Sbjct: 107 NAYLMIHKPSCTTVGDANELRKTAEALDTIQKGLEEVYRAAAKEHITDEDITKYVNQESW 166

Query: 190 MSASEA 195
            +  EA
Sbjct: 167 FTGEEA 172


>gi|258429955|ref|ZP_05688325.1| conserved hypothetical protein [Staphylococcus aureus A9299]
 gi|257849549|gb|EEV73517.1| conserved hypothetical protein [Staphylococcus aureus A9299]
          Length = 245

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 74/143 (51%), Gaps = 2/143 (1%)

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
           C + +  + E   +++ + INS GG + AG  IY  ++  K  ++      AAS  SL+ 
Sbjct: 27  CPKDVLTQLEFSDEDVDIIINSNGGNLVAGSEIYTHLRAHKGKVNVRITAIAASAASLIA 86

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
            AG+  +  + P AR+++H PS    G+A D+   A+ +  + + + E Y    GK  +E
Sbjct: 87  MAGDH-IEMS-PVARMMIHNPSSIAQGEAKDLNHAAETLEHVGQIMAEAYAVRAGKNKQE 144

Query: 180 VEKTLDRDHIMSASEACDWGVVD 202
           + + + R+  ++A EA + G  D
Sbjct: 145 LVEMMARETWLNADEAIEQGFAD 167


>gi|257078066|ref|ZP_05572427.1| phage protein [Enterococcus faecalis JH1]
 gi|256986096|gb|EEU73398.1| phage protein [Enterococcus faecalis JH1]
          Length = 253

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 73/149 (48%), Gaps = 5/149 (3%)

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           +L L   N  +++ + INS GG+V  G  IY  ++  +  +    +  A S  S++  AG
Sbjct: 31  VLDLLPANHNEDVEVTINSNGGLVDMGNEIYTALRSYEGHVKVNIV-MAGSAASIIAMAG 89

Query: 123 EKGMRFAL-PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVE 181
                 A+ P  +I++H  + G  G    +++ ++ + K  + L   YV   GK  EE+ 
Sbjct: 90  N---TVAISPVGQIMIHNVAMGAGGDYHTMDKASEILQKANKSLANAYVSKTGKAKEEIL 146

Query: 182 KTLDRDHIMSASEACDWGVVDKVLMSRID 210
             +D++  ++A EA + G  D+++    +
Sbjct: 147 ALMDKETWLTAEEAVENGFADEIMFENTE 175


>gi|239638102|ref|ZP_04679061.1| serine protease [Staphylococcus warneri L37603]
 gi|239596385|gb|EEQ78923.1| serine protease [Staphylococcus warneri L37603]
          Length = 258

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 69/133 (51%), Gaps = 5/133 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
           E+ + INS GG V +G+ IY+ ++     I+    G AAS+ S++  AG+      +P N
Sbjct: 39  EVVVNINSNGGDVFSGVTIYNMLRRFDAHITVNVDGLAASIASVIAMAGDT---INMPGN 95

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYV-KNCGKTYEEVEKTLDRDHIMS 191
           A +++H       G A   ++ A+D+ +I   +   YV KN    +  ++  +D +  ++
Sbjct: 96  AMLMVHNAWTVNEGDARSFKKRAEDLERINSVVFNSYVDKNPDIDHALLQDYMDEETWLT 155

Query: 192 ASEACDWGVVDKV 204
           A EA   G++D +
Sbjct: 156 AKEAKKLGLIDNI 168


>gi|15924954|ref|NP_372488.1| phiN315 scaffolding protein-like protein [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|15927540|ref|NP_375073.1| hypothetical protein SA1775 [Staphylococcus aureus subsp. aureus
           N315]
 gi|30043952|ref|NP_835555.1| hypothetical protein, similar to scaffolding protein
           [Staphylococcus phage phiN315]
 gi|49484207|ref|YP_041431.1| Clp protease [Staphylococcus aureus subsp. aureus MRSA252]
 gi|87162394|ref|YP_494590.1| phi77 ORF015-like protein, putative protease [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|118725094|ref|YP_908830.1| putative Clp protease [Staphylococcus phage phiNM3]
 gi|151222109|ref|YP_001332931.1| phage Clp-like protease [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|156980281|ref|YP_001442540.1| hypothetical protein SAHV_1950 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161510188|ref|YP_001575847.1| endopeptidase ClpP [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253316780|ref|ZP_04839993.1| phi77 ORF015-like protein, putative protease [Staphylococcus aureus
           subsp. aureus str. CF-Marseille]
 gi|255006752|ref|ZP_05145353.2| phi77 ORF015-like protein, putative protease [Staphylococcus aureus
           subsp. aureus Mu50-omega]
 gi|257426118|ref|ZP_05602534.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428771|ref|ZP_05605166.1| endopeptidase ClpP [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257431384|ref|ZP_05607758.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257434097|ref|ZP_05610448.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257437005|ref|ZP_05613046.1| endopeptidase ClpP [Staphylococcus aureus subsp. aureus M876]
 gi|258413640|ref|ZP_05681914.1| conserved hypothetical protein [Staphylococcus aureus A9763]
 gi|258423045|ref|ZP_05685944.1| conserved hypothetical protein [Staphylococcus aureus A9635]
 gi|258447952|ref|ZP_05696086.1| conserved hypothetical protein [Staphylococcus aureus A6224]
 gi|282914818|ref|ZP_06322600.1| putative Clp protease [Staphylococcus aureus subsp. aureus M899]
 gi|282925262|ref|ZP_06332920.1| Clp protease [Staphylococcus aureus subsp. aureus C101]
 gi|282928145|ref|ZP_06335752.1| Clp protease [Staphylococcus aureus A10102]
 gi|283771122|ref|ZP_06344013.1| endopeptidase ClpP [Staphylococcus aureus subsp. aureus H19]
 gi|293507840|ref|ZP_06667682.1| Clp protease [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510803|ref|ZP_06669504.1| endopeptidase ClpP [Staphylococcus aureus subsp. aureus M809]
 gi|293545403|ref|ZP_06672080.1| putative Clp protease [Staphylococcus aureus subsp. aureus M1015]
 gi|294849516|ref|ZP_06790258.1| Clp protease [Staphylococcus aureus A9754]
 gi|295428547|ref|ZP_06821174.1| Clp protease [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296276195|ref|ZP_06858702.1| phi77 ORF015-like protein, putative protease [Staphylococcus aureus
           subsp. aureus MR1]
 gi|13701759|dbj|BAB43052.1| SA1775 [Staphylococcus aureus subsp. aureus N315]
 gi|14247737|dbj|BAB58126.1| phiN315 scaffolding protein-like protein [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|49242336|emb|CAG41046.1| putative Clp protease [Staphylococcus aureus subsp. aureus MRSA252]
 gi|87128368|gb|ABD22882.1| phi77 ORF015-like protein, putative protease [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|104641859|gb|ABF73201.1| putative Clp protease [Staphylococcus phage phiNM3]
 gi|150374909|dbj|BAF68169.1| phage Clp-like protease [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|156722416|dbj|BAF78833.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|160368997|gb|ABX29968.1| S14 family endopeptidase ClpP [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|257271026|gb|EEV03195.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274415|gb|EEV05927.1| endopeptidase ClpP [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257277830|gb|EEV08494.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281023|gb|EEV11167.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257283599|gb|EEV13725.1| endopeptidase ClpP [Staphylococcus aureus subsp. aureus M876]
 gi|257839593|gb|EEV64063.1| conserved hypothetical protein [Staphylococcus aureus A9763]
 gi|257846832|gb|EEV70847.1| conserved hypothetical protein [Staphylococcus aureus A9635]
 gi|257858884|gb|EEV81753.1| conserved hypothetical protein [Staphylococcus aureus A6224]
 gi|282313050|gb|EFB43449.1| Clp protease [Staphylococcus aureus subsp. aureus C101]
 gi|282321313|gb|EFB51642.1| putative Clp protease [Staphylococcus aureus subsp. aureus M899]
 gi|282590209|gb|EFB95290.1| Clp protease [Staphylococcus aureus A10102]
 gi|283459716|gb|EFC06807.1| endopeptidase ClpP [Staphylococcus aureus subsp. aureus H19]
 gi|285817650|gb|ADC38137.1| Prophage Clp protease-like protein [Staphylococcus aureus 04-02981]
 gi|290919816|gb|EFD96887.1| putative Clp protease [Staphylococcus aureus subsp. aureus M1015]
 gi|291094903|gb|EFE25171.1| Clp protease [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466376|gb|EFF08901.1| endopeptidase ClpP [Staphylococcus aureus subsp. aureus M809]
 gi|294823653|gb|EFG40080.1| Clp protease [Staphylococcus aureus A9754]
 gi|295127529|gb|EFG57168.1| Clp protease [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|312830339|emb|CBX35181.1| clp protease family protein [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315196577|gb|EFU26925.1| S14 family endopeptidase ClpP [Staphylococcus aureus subsp. aureus
           CGS01]
          Length = 245

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 74/143 (51%), Gaps = 2/143 (1%)

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
           C + +  + E   +++ + INS GG + AG  IY  ++  K  ++      AAS  SL+ 
Sbjct: 27  CPKDVLTQLEFSDEDVDIIINSNGGNLVAGSEIYTHLRAHKGKVNVRITAIAASAASLIA 86

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
            AG+  +  + P AR+++H PS    G+A D+   A+ +  + + + E Y    GK  +E
Sbjct: 87  MAGDH-IEMS-PVARMMIHNPSSIAQGEAKDLNHAAETLEHVGQIMAEAYAVRAGKNKQE 144

Query: 180 VEKTLDRDHIMSASEACDWGVVD 202
           + + + R+  ++A EA + G  D
Sbjct: 145 LVEMMARETWLNADEAIEQGFAD 167


>gi|210621038|ref|ZP_03292423.1| hypothetical protein CLOHIR_00366 [Clostridium hiranonis DSM 13275]
 gi|210155022|gb|EEA86028.1| hypothetical protein CLOHIR_00366 [Clostridium hiranonis DSM 13275]
          Length = 244

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 74/132 (56%), Gaps = 9/132 (6%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG-EKGMRFALP 131
           K++ ++INS GG V AG+ IY+ ++  K   + +  G AAS+ S++  AG E  MR    
Sbjct: 59  KDLEIHINSGGGSVFAGITIYNMLKNFKGHKTVYVDGLAASIASVIALAGDEVVMR---T 115

Query: 132 NARILLHQPSGGFSGQ---ASDIERHAQDIVKIKRRLNEIYVKNC--GKTYEEVEKTLDR 186
            + +++H+PS     Q   A +++  ++ + K++  + +IY +N       EE+E  ++ 
Sbjct: 116 GSSMMIHKPSVYIYNQSLNADELKGMSETLDKLQECIMQIYRENLKDKSKLEEIETMVNA 175

Query: 187 DHIMSASEACDW 198
           +  M++ EA D+
Sbjct: 176 ETWMTSEEAMDY 187


>gi|320161811|ref|YP_004175036.1| peptidase S14, ClpP family protein [Anaerolinea thermophila UNI-1]
 gi|319995665|dbj|BAJ64436.1| peptidase S14, ClpP family protein [Anaerolinea thermophila UNI-1]
          Length = 196

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 72/143 (50%), Gaps = 19/143 (13%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           + + L +++PGG V+ G+ +Y  ++ +   + T+ +GQ  S+G ++  AG++  R A P 
Sbjct: 34  ERVHLLLSTPGGTVSYGLTLYALLRGLPIEVWTYNVGQVDSIGVVVYCAGKR--RLAAPQ 91

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIK----------RRLNEIYVKNCGKTYEEVEK 182
            R LLH       G  + +ER      +++          R +  +  ++ G+  E+VE+
Sbjct: 92  TRFLLH-------GIRTPLERGVYTTEQLREIVGEMETDQRNICRVLAESTGQALEKVER 144

Query: 183 TLDRDHIMSASEACDWGVVDKVL 205
            L     +   +A ++ +VD+++
Sbjct: 145 DLFHALTLLPEQAREYRLVDEIV 167


>gi|304439217|ref|ZP_07399135.1| ATP-dependent Clp protease proteolytic subunit [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304372349|gb|EFM25937.1| ATP-dependent Clp protease proteolytic subunit [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 235

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 79/169 (46%), Gaps = 4/169 (2%)

Query: 42  ERIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           E ++++ G I  +      +  +L   E +N   +I+++INSPGG   A   IY  +   
Sbjct: 21  ENVLYIDGVIAEDSWFDDDVTPKLFASELKNKSGDITVWINSPGGDCIAASRIYTMLLEH 80

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
           K  ++    G AAS  S++  AG + +    P + I++H P     G + ++++    + 
Sbjct: 81  KGNVTIKIDGLAASAASVIAMAGTEVLMS--PTSLIMIHNPLTVAIGDSKEMQKAIDMLK 138

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           ++K  +   Y    G + EE+   +D +     ++A + G  D  L+ +
Sbjct: 139 EVKESIINAYEIKTGLSREEISNLMDGETWFDKNKAIEMGFCDGTLIDK 187


>gi|300766160|ref|ZP_07076125.1| ClpP protease [Listeria monocytogenes FSL N1-017]
 gi|300513118|gb|EFK40200.1| ClpP protease [Listeria monocytogenes FSL N1-017]
          Length = 265

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 68/146 (46%), Gaps = 2/146 (1%)

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
           CA+ +     N   E+ ++INS GG V AG  IY  ++     +    +G AAS  S++ 
Sbjct: 28  CAKDINEALANASGEVEVWINSNGGDVFAGSEIYTALKSYNGNVVVKIVGMAASAASVIA 87

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
            AG +      P  ++++H    G  G   ++++ ++        +   Y    GKT EE
Sbjct: 88  MAGNE--VLISPTGQMMIHNVQYGGRGDYRELKKASEIAQNANISIANAYQLKTGKTLEE 145

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVL 205
           +   +  +  +++ +A + G+ D V+
Sbjct: 146 LLNMMGEETWLNSQQAVELGLADGVM 171


>gi|317403655|gb|EFV84143.1| ATP-dependent Clp protease proteolytic subunit [Achromobacter
           xylosoxidans C54]
          Length = 369

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 67/131 (51%), Gaps = 4/131 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I + +NSPGG V   +AIY+ ++     ++T   G AAS  SL+  AG++     +P NA
Sbjct: 52  IVVSLNSPGGDVFDALAIYNALRRYAGRVTTRVDGFAASAASLIAMAGDQ---LIMPENA 108

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           ++++H       G A D+   A  + +++  +   Y +  G+  +++ + +D    MSA 
Sbjct: 109 QLMIHNAWTITGGTAEDLRSTADMMDRVRDGVVAAYARKSGQDADKIVEMMDATTWMSAL 168

Query: 194 EACDWGVVDKV 204
           EA   G  D +
Sbjct: 169 EAQALGFCDLI 179


>gi|315573877|gb|EFU86068.1| Clp protease [Enterococcus faecalis TX0309B]
 gi|315580361|gb|EFU92552.1| Clp protease [Enterococcus faecalis TX0309A]
          Length = 254

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 73/148 (49%), Gaps = 5/148 (3%)

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           L  L A N   E++  INS GG+V  G  IY  ++  +  +    +  A S  S++  AG
Sbjct: 34  LDLLPANNEDVEVT--INSNGGLVDMGNEIYTALRSYEGHVKVNIV-MAGSAASIIAMAG 90

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
            K +  + P  +I++H  + G  G    +++ ++ + K  + L   YV   GK  EE+  
Sbjct: 91  -KTVAIS-PVGQIMIHNVAMGAGGDYHTMDKASEILQKANKSLANAYVSKTGKAKEEILA 148

Query: 183 TLDRDHIMSASEACDWGVVDKVLMSRID 210
            +D++  ++A EA + G  D+++    +
Sbjct: 149 LMDKETWLTAEEAVENGFADEIMFENTE 176


>gi|291514745|emb|CBK63955.1| Protease subunit of ATP-dependent Clp proteases [Alistipes shahii
           WAL 8301]
          Length = 290

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 4/142 (2%)

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AE    E+ + I S GG V   + I+D ++ +   ++T C G  AS  +++  A  +G R
Sbjct: 51  AEIEAPEVVVNIRSTGGDVNDALLIHDALRQLPARVTTRCYGYTASAATIIAQAASEGCR 110

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
               NA  L+H       G A++I      + +   R+  +Y    G+   E E  +  +
Sbjct: 111 LLSANALYLIHTAICSTEGNAAEIAGKIDLLHQTDARIAAVYASRSGRPAAEFEALMAEN 170

Query: 188 H----IMSASEACDWGVVDKVL 205
           +     ++  EA   G+ DKV+
Sbjct: 171 NGNGRWLAPEEAVAAGLADKVV 192


>gi|220931198|ref|YP_002508106.1| peptidase S14 ClpP [Halothermothrix orenii H 168]
 gi|219992508|gb|ACL69111.1| peptidase S14 ClpP [Halothermothrix orenii H 168]
          Length = 234

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 71/132 (53%), Gaps = 2/132 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I +++NS GG +   +AI++  +  K  I     G AAS GS++L AG+K ++F  PN+
Sbjct: 55  KIIVHLNSTGGDLFQSVAIHNLFKDHKAEIIMINDGIAASGGSIILMAGDK-IKF-YPNS 112

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H       G A      A+ + KI + L E Y +      +E+EK +  +  ++A 
Sbjct: 113 IMMIHAAHTITYGDAKYHREVARKLDKIDKSLKENYSQRFTGAEKELEKLIQEETWLTAK 172

Query: 194 EACDWGVVDKVL 205
           EA + G  D+++
Sbjct: 173 EAKEKGFCDEII 184


>gi|167753873|ref|ZP_02426000.1| hypothetical protein ALIPUT_02158 [Alistipes putredinis DSM 17216]
 gi|167658498|gb|EDS02628.1| hypothetical protein ALIPUT_02158 [Alistipes putredinis DSM 17216]
          Length = 335

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 4/136 (2%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           EI + I S GG V   + IY+ +  +   I T C G  AS  +++  A  +G R    +A
Sbjct: 99  EIVVNIRSTGGDVNDALLIYEALSSLDGHIVTRCYGYTASAATVIAQAASEGCREISAHA 158

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH----I 189
             L+H       G A ++      + K   RL E+Y    G+T EE    +  ++     
Sbjct: 159 LYLIHNSICTAEGNAEELATRIDLLRKTDARLAEVYAARSGRTPEEFTLLMAENNGSGRW 218

Query: 190 MSASEACDWGVVDKVL 205
           +S  EA   G+VD+++
Sbjct: 219 LSPQEALAAGLVDRII 234


>gi|218891274|ref|YP_002440141.1| ClpP protease [Pseudomonas aeruginosa LESB58]
 gi|218771500|emb|CAW27267.1| ClpP protease [Pseudomonas aeruginosa LESB58]
          Length = 296

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 67/134 (50%), Gaps = 2/134 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           ++++ INSPGG V  G+AIY+ ++  K  ++   +G AAS  S +  AG++ +R     A
Sbjct: 79  DVTVNINSPGGDVFEGLAIYNLLREHKGKVTVNIIGLAASAASFIAMAGDE-IRIGRA-A 136

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H       G  +D+   A  +      L +IY +  G   +++ K +D +  +   
Sbjct: 137 FLMIHNAWLIAMGNRNDLREIADWLEPFDMTLADIYAQRTGIDIDDIVKQMDAETWIGGR 196

Query: 194 EACDWGVVDKVLMS 207
           EA D G  D  L S
Sbjct: 197 EAVDKGWADAFLES 210


>gi|292491118|ref|YP_003526557.1| peptidase S14 ClpP [Nitrosococcus halophilus Nc4]
 gi|291579713|gb|ADE14170.1| peptidase S14 ClpP [Nitrosococcus halophilus Nc4]
          Length = 785

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 4/132 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I+  INS GG V  G+AI++ +      ++T   G AAS+ SL+  AGE+  R    NA 
Sbjct: 69  ITARINSIGGSVYDGLAIHNALVRHPAQVTTTIDGIAASIASLIAMAGEE--RTMASNAL 126

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD--RDHIMSA 192
           +++H P     G + +  R A  + K    +   Y +  G++ E++   L    DH  +A
Sbjct: 127 LMVHAPWTLAIGNSEEFRRMADMLDKHSEAMTAAYAEATGQSAEDILALLTDGEDHYYTA 186

Query: 193 SEACDWGVVDKV 204
            EA   G V  V
Sbjct: 187 EEAQALGFVHSV 198


>gi|304383262|ref|ZP_07365731.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
 gi|304335616|gb|EFM01877.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
          Length = 369

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 81/158 (51%), Gaps = 8/158 (5%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM 108
           GQ  D  A  +  +L+ L A  P+  I + INS GG V +GMAI++ ++  K  I+ +  
Sbjct: 27  GQQVDSKA--VVEELITLAARYPK--IDVRINSCGGDVFSGMAIFNALKTSKADITVYID 82

Query: 109 GQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           G AAS+ +++   G+    +  P A+++LH    G  G A  +E+  Q I ++   L+ +
Sbjct: 83  GVAASIAAIVALCGKP--LYMAPYAKLMLHSVKAGGYGDAKQLEQTIQLINQLHGDLSNM 140

Query: 169 YVKNCGKTYEEVEKTL--DRDHIMSASEACDWGVVDKV 204
                  T EEVE+      DH ++A EA    +++ +
Sbjct: 141 VSARLNITPEEVEQRFFDGTDHWLTAQEALQMKLINGI 178


>gi|168211352|ref|ZP_02636977.1| serine protease [Clostridium perfringens B str. ATCC 3626]
 gi|170710641|gb|EDT22823.1| serine protease [Clostridium perfringens B str. ATCC 3626]
          Length = 255

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 72/138 (52%), Gaps = 13/138 (9%)

Query: 75  ISLYINSPGGVVTAGMAIYDTM--QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP- 131
           +++YINSPGG V  G AI++ +  +     I+ +  G AAS+ S++  A   G   ++P 
Sbjct: 54  LNVYINSPGGDVFEGYAIFNVLRRKADNCQINVYIDGMAASIASVIAMA---GTHISMPS 110

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD-----R 186
           NA +++H+ S G  G +  + +  + + KI   + + Y+       +  + TLD      
Sbjct: 111 NAVMMIHRASIGIYGNSDVLAKGIKFLEKIDNNMKQTYINRSNGKLD--DSTLDFLFSNG 168

Query: 187 DHIMSASEACDWGVVDKV 204
           D  ++A E  ++G+ D+V
Sbjct: 169 DTWLTAQECLEYGLCDEV 186


>gi|153941045|ref|YP_001392481.1| putative Clp protease [Clostridium botulinum F str. Langeland]
 gi|152936941|gb|ABS42439.1| putative Clp protease [Clostridium botulinum F str. Langeland]
 gi|295320466|gb|ADG00844.1| putative Clp protease [Clostridium botulinum F str. 230613]
          Length = 266

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 71/136 (52%), Gaps = 4/136 (2%)

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           FL+  +  KE+ +YINS GG V AG+AIY  ++      +    G AAS+ S++   G+K
Sbjct: 62  FLKEIDNNKELDIYINSGGGSVFAGLAIYHQLKRHNGFKTVHVDGLAASITSVIALVGDK 121

Query: 125 GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC--GKTYEEVEK 182
            +    P A+ ++H+P     G A++  + A D+   +  + +IY  N   G   E +++
Sbjct: 122 -VVIPAP-AQFMIHKPWTIALGNANEFRKQANDLDIAEESILKIYEANLNEGVNIETIKQ 179

Query: 183 TLDRDHIMSASEACDW 198
            +  +  M+  +A ++
Sbjct: 180 LMADETWMTGEKAAEY 195


>gi|254474347|ref|ZP_05087733.1| peptidase S14, ClpP [Ruegeria sp. R11]
 gi|214028590|gb|EEB69425.1| peptidase S14, ClpP [Ruegeria sp. R11]
          Length = 377

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 65/127 (51%), Gaps = 4/127 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK-GMRFALPN 132
           +I++ +NS GG    G+AIY+ ++     ++    G AAS  SL+  AG++  MR     
Sbjct: 42  DITVRVNSGGGYTDQGIAIYNALKAHGGEVTVVVDGVAASAASLISMAGDQIIMRR---G 98

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A ++LH PSG  SG A +I    + + +I   +  IY +  G   +++ K +  +  ++ 
Sbjct: 99  ATMMLHDPSGFASGMADEIAIAVRALDRIGAVMASIYAEQSGDDPDDLRKEMKAELWLTG 158

Query: 193 SEACDWG 199
            EA   G
Sbjct: 159 EEAVKRG 165


>gi|77415230|ref|ZP_00791222.1| Clp protease [Streptococcus agalactiae 515]
 gi|77158720|gb|EAO70039.1| Clp protease [Streptococcus agalactiae 515]
          Length = 85

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 130 LPNARILLHQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           LPNA  ++HQP    G   Q SD+   A+ ++K +  L +I   N G++ E+V    +RD
Sbjct: 2   LPNAEYMIHQPMGGTGGGTQQSDMAIAAEHLLKTRHTLEKILADNSGQSIEKVHDDAERD 61

Query: 188 HIMSASEACDWGVVDKVL 205
             MSA E  D+G +D ++
Sbjct: 62  RWMSAQETLDYGFIDAIM 79


>gi|288957681|ref|YP_003448022.1| Clp protease [Azospirillum sp. B510]
 gi|288958877|ref|YP_003449218.1| ATP-dependent Clp protease [Azospirillum sp. B510]
 gi|288909989|dbj|BAI71478.1| Clp protease [Azospirillum sp. B510]
 gi|288911185|dbj|BAI72674.1| ATP-dependent Clp protease [Azospirillum sp. B510]
          Length = 287

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 67/131 (51%), Gaps = 2/131 (1%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I++ +NSPGGVV  G+AIY  +   K  I     G AAS+ S++  AG++ +R A   A 
Sbjct: 51  INVRLNSPGGVVFDGVAIYQALARHKANIVIHIDGIAASIASVIAMAGDE-IRIA-EGAH 108

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           +++H+P     G A  + + A  + +++  + +IY    G+  + +   +  +    A  
Sbjct: 109 VMIHKPWSFAIGDAEVMRKEADILDQLESGIVDIYAARTGQERKALVDWVAAETWFGAQA 168

Query: 195 ACDWGVVDKVL 205
           A D G  D V+
Sbjct: 169 AKDAGFADTVV 179


>gi|225222|prf||1211235BD ORF 73
          Length = 73

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 136 LLHQPSGGF-SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           ++HQP+  F   Q  +    A++++K++  L  +YV+  GK    V + ++RD  MSA+E
Sbjct: 1   MIHQPASSFYEAQTGEFVLEAEELLKLRETLTRVYVQRTGKPLWVVSEDMERDVFMSATE 60

Query: 195 ACDWGVVDKV 204
           A  +G+VD V
Sbjct: 61  AQAYGIVDLV 70


>gi|261418104|ref|YP_003251786.1| peptidase S14 ClpP [Geobacillus sp. Y412MC61]
 gi|319767937|ref|YP_004133438.1| peptidase S14 ClpP [Geobacillus sp. Y412MC52]
 gi|261374561|gb|ACX77304.1| peptidase S14 ClpP [Geobacillus sp. Y412MC61]
 gi|317112803|gb|ADU95295.1| peptidase S14 ClpP [Geobacillus sp. Y412MC52]
          Length = 244

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 66/133 (49%), Gaps = 2/133 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           ++I+++I+S GG V A   IY+ ++     ++     +A S  S++  AG++ +    P 
Sbjct: 59  RDITVWIDSYGGSVFAAAGIYNALKEHDGKVTVKIDSKAMSAASVIAMAGDEVLMS--PM 116

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A +++H P     G   D+ + A  +  IK  +   Y    G++  ++ + +D +  MSA
Sbjct: 117 AVMMIHNPLTAAYGNMHDLRKVADILDTIKESIVNAYALKTGRSRSKISQMMDDETWMSA 176

Query: 193 SEACDWGVVDKVL 205
           + A   G  D +L
Sbjct: 177 NVAVKEGFADGIL 189


>gi|290891498|ref|ZP_06554556.1| hypothetical protein AWRIB429_1946 [Oenococcus oeni AWRIB429]
 gi|290478847|gb|EFD87513.1| hypothetical protein AWRIB429_1946 [Oenococcus oeni AWRIB429]
          Length = 256

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 6/135 (4%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK-GMRFALP 131
           ++I L INS GG V+A   IY  ++  +  ++ F  G AAS  S++  AG+K  M    P
Sbjct: 47  EDIQLNINSNGGDVSAASTIYSMLKAYQGKVNVFIQGMAASAASVIAMAGDKVSMS---P 103

Query: 132 NARILLHQPSGGFSG--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
            A++++H+   G S    +  + + A     +   +   Y+   G    ++ + +     
Sbjct: 104 TAQLMIHKCLAGVSDPLNSDQLRQIAAQNDSVDLGIANAYMAKTGMNQSDLLQLMSNQTF 163

Query: 190 MSASEACDWGVVDKV 204
           M A  A D G VD+V
Sbjct: 164 MDAKTAADKGFVDEV 178


>gi|323484093|ref|ZP_08089463.1| ATP-dependent Clp protease [Clostridium symbiosum WAL-14163]
 gi|323402535|gb|EGA94863.1| ATP-dependent Clp protease [Clostridium symbiosum WAL-14163]
          Length = 236

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 74/166 (44%), Gaps = 4/166 (2%)

Query: 42  ERIVFVTGQIEDH--MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           ER + + G+I D       +  +L   E      +++++INSPGG V A   IY+ +   
Sbjct: 16  ERTLVLNGEISDETWFGDEVTPKLFEKELNAGAGDVTVWINSPGGDVFAAAQIYNMLMEY 75

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
           K  ++      AAS  S++  AG        P   +++H P     G + ++++  + + 
Sbjct: 76  KGDVTVKVDALAASAASVIAMAGTS--VLISPVGMMMIHNPMTIAIGDSKEMQKAGEMLD 133

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           ++K  +   Y    G +   +   +D +   +A +A + G  D +L
Sbjct: 134 EVKESIMNAYEIKTGLSRARISHLMDAESWFNAKKAVELGFADGIL 179


>gi|255973197|ref|ZP_05423783.1| predicted protein [Enterococcus faecalis T1]
 gi|255964215|gb|EET96691.1| predicted protein [Enterococcus faecalis T1]
          Length = 252

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           L  L A N   E++  INS GG+V  G  IY  ++  +  +    +  A S  S++  AG
Sbjct: 32  LDLLPANNEDVEVT--INSNGGLVDMGNEIYTALRSYEGHVKVNIV-MAGSAASIIAMAG 88

Query: 123 EKGMRFAL-PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVE 181
                 A+ P  +I++H  + G  G    +++ ++ + K  + L   YV   GK  EE+ 
Sbjct: 89  N---TVAISPVGQIMIHNVAMGAGGDYHTMDKASEILQKANKSLANAYVSKTGKAKEEIL 145

Query: 182 KTLDRDHIMSASEACDWGVVDKVLMSRID 210
             +D+   ++A EA + G  D+++    +
Sbjct: 146 ALMDKQTWLTAEEAVESGFADEIMFENTE 174


>gi|237795138|ref|YP_002862690.1| serine protease [Clostridium botulinum Ba4 str. 657]
 gi|229260557|gb|ACQ51590.1| serine protease [Clostridium botulinum Ba4 str. 657]
          Length = 253

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 71/139 (51%), Gaps = 7/139 (5%)

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           FL+  N    + +Y+NS GG V AG+AIY+ ++      +    G AAS+ S++  AG+K
Sbjct: 61  FLKELNSFDNLDIYVNSGGGSVFAGIAIYNQLKRHNGFKTVHVDGIAASITSVISCAGDK 120

Query: 125 GMRFALPNARILLHQPSGGF---SGQASDIERHAQDIVKIKRRLNEIYVKNC--GKTYEE 179
            +     +A+ ++H+P+  +   S  A ++ + A  +   +  +  IY++N   G T EE
Sbjct: 121 VI--IHKSAQFMIHKPTASYFWTSLNADELRKEADTLDICQDSIRNIYMENVKEGITEEE 178

Query: 180 VEKTLDRDHIMSASEACDW 198
           +   ++ +   +     D+
Sbjct: 179 INNLINAETWFTGETVTDY 197


>gi|257081786|ref|ZP_05576147.1| gp4 [Enterococcus faecalis E1Sol]
 gi|256989816|gb|EEU77118.1| gp4 [Enterococcus faecalis E1Sol]
          Length = 230

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           L  L A N   E++  INS GG+V  G  IY  ++  +  +    +  A S  S++  AG
Sbjct: 10  LDLLPANNEDVEVT--INSNGGLVDMGNEIYTALRSYEGHVKVNIV-MAGSAASIIAMAG 66

Query: 123 EKGMRFAL-PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVE 181
                 A+ P  +I++H  + G  G    +++ ++ + K  + L   YV   GK  EE+ 
Sbjct: 67  N---TVAISPVGQIMIHNVAMGAGGDYHTMDKASEILQKANKSLANAYVSKTGKAKEEIL 123

Query: 182 KTLDRDHIMSASEACDWGVVDKVLMSRID 210
             +D+   ++A EA + G  D+++    +
Sbjct: 124 ALMDKQTWLTAEEAVESGFADEIMFENTE 152


>gi|329954258|ref|ZP_08295352.1| endopeptidase Clp [Bacteroides clarus YIT 12056]
 gi|328527964|gb|EGF54950.1| endopeptidase Clp [Bacteroides clarus YIT 12056]
          Length = 438

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 5/147 (3%)

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           L +L+  +P   I + I+S GG    G AIYD ++     IS   +G+ ASM +++L + 
Sbjct: 97  LSWLDPADPT--IDIEIHSCGGDTVEGYAIYDALRASGKEISCTVVGRCASMATIILLSA 154

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASD---IERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
               R A P+A+ L+H+P         D   IE     +   K ++  +YV+  G     
Sbjct: 155 PLERRKAYPHAKFLIHKPYLAKYDDVLDLETIETLKSSLETEKAKMLAVYVERTGTEPNV 214

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVLM 206
           +E  ++++       A   G +  VL+
Sbjct: 215 LETQMNKETWFGGEVAKQLGFISAVLV 241


>gi|313896403|ref|ZP_07829954.1| endopeptidase Clp [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312974827|gb|EFR40291.1| endopeptidase Clp [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 231

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 81/171 (47%), Gaps = 4/171 (2%)

Query: 41  KERIVFVTGQIEDH--MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           ++RI+ + G+I D       +  Q    E    + +I L+INSPGG   A   IY+ +  
Sbjct: 14  EKRILLLDGEISDETWWGDEVTPQTFRSELNAAEGDIDLWINSPGGDCYAAAQIYNMLME 73

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
            K  ++    G AAS  S++  AG   +  + P A I++H P     G   ++ER    +
Sbjct: 74  YKGNVNVKIDGIAASAASVVAMAGTT-VEMS-PVATIMIHNPMTVSIGDTHEMERTITFL 131

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
            +IK  +   Y    G +  ++ + +D +  M+A +A + G  D VL + +
Sbjct: 132 AEIKESIINAYELRTGLSRAKISRLMDAETWMNAKKAVELGFADSVLYADV 182


>gi|257421724|ref|ZP_05598714.1| predicted protein [Enterococcus faecalis X98]
 gi|257163548|gb|EEU93508.1| predicted protein [Enterococcus faecalis X98]
          Length = 230

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           L  L A N   E++  INS GG+V  G  IY  ++  +  +    +  A S  S++  AG
Sbjct: 10  LDLLPANNEDVEVT--INSNGGLVDMGNEIYTALRSYEGHVKVNIV-MAGSAASIIAMAG 66

Query: 123 EKGMRFAL-PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVE 181
                 A+ P  +I++H  + G  G    +++ ++ + K  + L   YV   GK  EE+ 
Sbjct: 67  N---TVAISPVGQIMIHNVAMGAGGDYHTMDKASEILQKANKSLANAYVSKTGKAKEEIL 123

Query: 182 KTLDRDHIMSASEACDWGVVDKVLMSRID 210
             +D+   ++A EA + G  D+++    +
Sbjct: 124 ALMDKQTWLTAEEAVESGFADEIMFENTE 152


>gi|255524218|ref|ZP_05391177.1| peptidase S14 ClpP [Clostridium carboxidivorans P7]
 gi|296185339|ref|ZP_06853749.1| Clp protease [Clostridium carboxidivorans P7]
 gi|255512043|gb|EET88324.1| peptidase S14 ClpP [Clostridium carboxidivorans P7]
 gi|296050173|gb|EFG89597.1| Clp protease [Clostridium carboxidivorans P7]
          Length = 229

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 86/182 (47%), Gaps = 22/182 (12%)

Query: 41  KERIVFVTGQIEDHMATL----------ICAQLLFLEAENPQKEISLYINSPGGVVTAGM 90
           K +++ + GQIE HM             +  QL+ +E +   + + + +N+ GG V AG+
Sbjct: 35  KIQVLPIIGQIEGHMILPPQSKSTKYEHVIPQLINIENDQNIEGLLIVLNTVGGDVEAGL 94

Query: 91  AIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASD 150
           AI + ++ +  P  +  +G   S+G  L +A +    F  P+A +++H      +G    
Sbjct: 95  AIAEMIRSLSKPTVSLVIGGGHSIGVPLATAAD--YSFISPSATMIIHPIR--MNGLVIG 150

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDHIMSASEACDWGVVD 202
           + +  +   K++ R+ E  V+      E+V+K +        D   I+   +A + G++D
Sbjct: 151 VPQTFEYFNKMQERITEFIVRTSKIKREQVQKLMVQTDELLNDMGTILIGEQAVEAGLID 210

Query: 203 KV 204
           +V
Sbjct: 211 QV 212


>gi|153954066|ref|YP_001394831.1| protease [Clostridium kluyveri DSM 555]
 gi|146346947|gb|EDK33483.1| Predicted protease [Clostridium kluyveri DSM 555]
          Length = 229

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 86/183 (46%), Gaps = 24/183 (13%)

Query: 41  KERIVFVTGQIEDHMATL-----------ICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           K +I+ + GQIE H+ TL           +   L+ +E +   + + + +N+ GG V AG
Sbjct: 35  KIQILPIIGQIEGHV-TLPPETKATKYEHVIPNLILMENDPRVEGVLVVLNTVGGDVEAG 93

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
           +AI + ++ +  P  +  +G   S+G  L +A +    F  P A +++H      +G   
Sbjct: 94  LAIAEMIRSLSKPTVSLVIGGGHSIGVPLATASD--YSFISPTATMIVHPIR--MNGLII 149

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDHIMSASEACDWGVV 201
            + +  Q   K++ R+NE  V+    T E++   +        D   I+   +A + G++
Sbjct: 150 GVPQTFQYFNKMQERINEFIVRTSRITREKLSDLMLQSDDLLNDMGTILIGKQAVEQGLI 209

Query: 202 DKV 204
           DKV
Sbjct: 210 DKV 212


>gi|148268438|ref|YP_001247381.1| peptidase S14, ClpP [Staphylococcus aureus subsp. aureus JH9]
 gi|150394499|ref|YP_001317174.1| peptidase S14 ClpP [Staphylococcus aureus subsp. aureus JH1]
 gi|257793350|ref|ZP_05642329.1| conserved hypothetical protein [Staphylococcus aureus A9781]
 gi|258421077|ref|ZP_05684008.1| peptidase S14 ClpP [Staphylococcus aureus A9719]
 gi|258454503|ref|ZP_05702470.1| peptidase S14 ClpP [Staphylococcus aureus A5937]
 gi|295407473|ref|ZP_06817268.1| peptidase S14 [Staphylococcus aureus A8819]
 gi|297246299|ref|ZP_06930146.1| peptidase S14 [Staphylococcus aureus A8796]
 gi|147741507|gb|ABQ49805.1| peptidase S14, ClpP [Staphylococcus aureus subsp. aureus JH9]
 gi|149946951|gb|ABR52887.1| peptidase S14 ClpP [Staphylococcus aureus subsp. aureus JH1]
 gi|257787322|gb|EEV25662.1| conserved hypothetical protein [Staphylococcus aureus A9781]
 gi|257843025|gb|EEV67443.1| peptidase S14 ClpP [Staphylococcus aureus A9719]
 gi|257863360|gb|EEV86121.1| peptidase S14 ClpP [Staphylococcus aureus A5937]
 gi|294967676|gb|EFG43710.1| peptidase S14 [Staphylococcus aureus A8819]
 gi|297176784|gb|EFH36043.1| peptidase S14 [Staphylococcus aureus A8796]
 gi|315129217|gb|EFT85211.1| peptidase S14 ClpP [Staphylococcus aureus subsp. aureus CGS03]
 gi|329728115|gb|EGG64558.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus 21172]
          Length = 245

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 74/143 (51%), Gaps = 2/143 (1%)

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
           C + +  + E   +++ + INS GG + AG  IY  ++  K  ++      AAS  SL+ 
Sbjct: 27  CPKDVLTQLEFSDEDVDIIINSNGGNLVAGSEIYTHLRAHKGKVNVRITAIAASAASLIA 86

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
            AG+  +  + P AR+++H PS    G+A D+   A+ +  + + + E Y    GK  +E
Sbjct: 87  MAGDH-IEMS-PVARMMIHNPSSIAQGEAKDLNHAAETLEHVGQIMAEAYAVRAGKNKQE 144

Query: 180 VEKTLDRDHIMSASEACDWGVVD 202
           + + + ++  ++A EA + G  D
Sbjct: 145 LIEMMAKETWLNADEAIEQGFAD 167


>gi|295112635|emb|CBL31272.1| Protease subunit of ATP-dependent Clp proteases [Enterococcus sp.
           7L76]
          Length = 254

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           L  L A N   E++  INS GG+V  G  IY  ++  +  +    +  A S  S++  AG
Sbjct: 34  LDLLPANNEDVEVT--INSNGGLVDMGNEIYTALRSYEGHVKVNIV-MAGSAASIIAMAG 90

Query: 123 EKGMRFAL-PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVE 181
                 A+ P  +I++H  + G  G    +++ ++ + K  + L   YV   GK  EE+ 
Sbjct: 91  N---TVAISPVGQIMIHNVAMGAGGDYHTMDKASEILQKANKSLANAYVSKTGKAKEEIL 147

Query: 182 KTLDRDHIMSASEACDWGVVDKVLMSRID 210
             +D+   ++A EA + G  D+++    +
Sbjct: 148 ALMDKQTWLTAEEAVENGFADEIMFENTE 176


>gi|219854679|ref|YP_002471801.1| hypothetical protein CKR_1336 [Clostridium kluyveri NBRC 12016]
 gi|219568403|dbj|BAH06387.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 241

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 86/183 (46%), Gaps = 24/183 (13%)

Query: 41  KERIVFVTGQIEDHMATL-----------ICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           K +I+ + GQIE H+ TL           +   L+ +E +   + + + +N+ GG V AG
Sbjct: 47  KIQILPIIGQIEGHV-TLPPETKATKYEHVIPNLILMENDPRVEGVLVVLNTVGGDVEAG 105

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
           +AI + ++ +  P  +  +G   S+G  L +A +    F  P A +++H      +G   
Sbjct: 106 LAIAEMIRSLSKPTVSLVIGGGHSIGVPLATASD--YSFISPTATMIVHPIR--MNGLII 161

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDHIMSASEACDWGVV 201
            + +  Q   K++ R+NE  V+    T E++   +        D   I+   +A + G++
Sbjct: 162 GVPQTFQYFNKMQERINEFIVRTSRITREKLSDLMLQSDDLLNDMGTILIGKQAVEQGLI 221

Query: 202 DKV 204
           DKV
Sbjct: 222 DKV 224


>gi|182417555|ref|ZP_02948881.1| Clp protease [Clostridium butyricum 5521]
 gi|237668635|ref|ZP_04528619.1| Clp protease family protein [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182378568|gb|EDT76096.1| Clp protease [Clostridium butyricum 5521]
 gi|237656983|gb|EEP54539.1| Clp protease family protein [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 241

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 85/181 (46%), Gaps = 26/181 (14%)

Query: 44  IVFVTGQIEDH-------MATL---ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           ++ V GQIE H        AT    I  QL+ +E  +  K + + +N+ GG V AG+AI 
Sbjct: 51  VLSVIGQIEGHSVLPPQTKATKYEHIIPQLIEIEQNDSVKGVLIVLNTVGGDVEAGLAIA 110

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH--QPSGGFSGQASDI 151
           + +  +  P  +  +G   S+G  L ++ +    F  P+A +++H  + +G   G A   
Sbjct: 111 EMINSMSKPTVSIVIGGGHSIGVPLATSSD--FSFITPSATMIVHPVRMNGFVIGIAQTF 168

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDHIMSASEACDWGVVDK 203
           E       K++ R+N+  V+      E +EK +        D   ++   +A D G++D+
Sbjct: 169 EYFK----KMQERINDFIVRTSNIKSETLEKFMLQTDDLLNDVGTMLIGKQAVDCGLIDE 224

Query: 204 V 204
           V
Sbjct: 225 V 225


>gi|307943763|ref|ZP_07659107.1| ClpP protease [Roseibium sp. TrichSKD4]
 gi|307773393|gb|EFO32610.1| ClpP protease [Roseibium sp. TrichSKD4]
          Length = 283

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 64/132 (48%), Gaps = 2/132 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           +++++ INSPGG +  G AIY+ ++     ++   +G AAS GS +++ G   +R   P 
Sbjct: 75  EDVTVQINSPGGDLFEGTAIYNLLREHPAKVTVEVVGWAASAGS-IIAMGSDEIRMG-PG 132

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
            ++++H   G   G   D +   +   K    + +IY    G    ++ + +D +  +S 
Sbjct: 133 TKMMVHNAWGAVVGNRHDFKAGMELFEKFDAGIVDIYEARTGADRADIVRLMDEETFLSP 192

Query: 193 SEACDWGVVDKV 204
            +A   G  D V
Sbjct: 193 EDAKKLGFADVV 204


>gi|313895675|ref|ZP_07829231.1| endopeptidase Clp [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975801|gb|EFR41260.1| endopeptidase Clp [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 231

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 4/167 (2%)

Query: 41  KERIVFVTGQIEDH--MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           ++RI+ + G+I D       +  Q+   E    + ++ L+INSPGG   A   IY+ +  
Sbjct: 14  EKRILLLDGEISDETWWGDEVTPQMFRSELHAAEGDVDLWINSPGGDCYAAAQIYNMLME 73

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
            K  ++    G AAS  S++  AG   +  + P A I++H P     G   ++ER    +
Sbjct: 74  YKGNVAVKIDGIAASAASVVAMAGST-VEMS-PVATIMIHNPMTVSIGDTHEMERTITFL 131

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            +IK  +   Y    G +  ++ + +D +  M+A +A + G  D VL
Sbjct: 132 SEIKESIINAYELKTGLSRAKISRLMDAETWMNAKKAVELGFADAVL 178


>gi|160938986|ref|ZP_02086337.1| hypothetical protein CLOBOL_03880 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437949|gb|EDP15709.1| hypothetical protein CLOBOL_03880 [Clostridium bolteae ATCC
           BAA-613]
          Length = 259

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 70/131 (53%), Gaps = 5/131 (3%)

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AE   +++++YINS GG V AG+AIY+ ++  +     F    A S+ SL         +
Sbjct: 65  AEANGRDLNIYINSGGGSVFAGIAIYNMLKRYQGKKHCFVDALAGSIASLFPFVDSD--K 122

Query: 128 FALP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC--GKTYEEVEKTL 184
             +P NA +++H+P     G A+++ + A  +  I+  +  IY ++   G T E++++ +
Sbjct: 123 PTIPKNAYLMIHKPWCDCEGNANELRKMADTLEAIEAGIWSIYEEHLAEGVTIEQIKELM 182

Query: 185 DRDHIMSASEA 195
           + +  +S  EA
Sbjct: 183 EAETWLSGEEA 193


>gi|239625900|ref|ZP_04668931.1| ATP-dependent endopeptidase clp proteolytic subunit clpP
           [Clostridiales bacterium 1_7_47_FAA]
 gi|239520130|gb|EEQ59996.1| ATP-dependent endopeptidase clp proteolytic subunit clpP
           [Clostridiales bacterium 1_7_47FAA]
          Length = 257

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 70/131 (53%), Gaps = 5/131 (3%)

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AE   +++++YINS GG V AG+AIY+ ++  +     F    A S+ SL         +
Sbjct: 63  AEANGRDLNIYINSGGGSVFAGIAIYNMLKRYQGKKHCFVDALAGSIASLFPFVDSD--K 120

Query: 128 FALP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC--GKTYEEVEKTL 184
             +P NA +++H+P     G A+++ + A  +  I+  +  IY ++   G T E++++ +
Sbjct: 121 PTIPKNAYLMIHKPWCDCEGNANELRKMADTLEAIEAGIWSIYEEHLAEGVTIEQIKELM 180

Query: 185 DRDHIMSASEA 195
           + +  +S  EA
Sbjct: 181 EAETWLSGEEA 191


>gi|325674309|ref|ZP_08153998.1| Clp protease [Rhodococcus equi ATCC 33707]
 gi|325554989|gb|EGD24662.1| Clp protease [Rhodococcus equi ATCC 33707]
          Length = 376

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 65/131 (49%), Gaps = 2/131 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           EI++ INSPGG    G+AI + ++     +     G AAS  S++  AG++ +    P +
Sbjct: 48  EITVRINSPGGSAFDGIAIMNALRAHNARVVVHVDGLAASAASVIAMAGDEIVMG--PGS 105

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           ++++H+      G A+ +   A  + K+   +  +Y +  G  ++E    +  +   +A 
Sbjct: 106 QMMIHEAWVFTEGDAAFLRSEADRLDKMSDSITSLYARRAGGDFDEWRALVAAETWFTAE 165

Query: 194 EACDWGVVDKV 204
           EA   G+ D++
Sbjct: 166 EAVTAGLADRI 176


>gi|291525012|emb|CBK90599.1| Protease subunit of ATP-dependent Clp proteases [Eubacterium
           rectale DSM 17629]
          Length = 259

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 70/131 (53%), Gaps = 5/131 (3%)

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AE   +++++YINS GG V AG+AIY+ ++  +     F    A S+ SL         +
Sbjct: 65  AEANGRDLNIYINSGGGSVFAGIAIYNMLKRYQGKKHCFVDALAGSIASLFPFVDSD--K 122

Query: 128 FALP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC--GKTYEEVEKTL 184
             +P NA +++H+P     G A+++ + A  +  I+  +  IY ++   G T E++++ +
Sbjct: 123 PTIPKNAYLMIHKPWCDCEGNANELRKMADTLEAIEAGIWSIYEEHLAEGVTIEQIKELM 182

Query: 185 DRDHIMSASEA 195
           + +  +S  EA
Sbjct: 183 EAETWLSGEEA 193


>gi|257469574|ref|ZP_05633666.1| putative Clp protease [Fusobacterium ulcerans ATCC 49185]
 gi|317063812|ref|ZP_07928297.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313689488|gb|EFS26323.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 252

 Score = 51.2 bits (121), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 69/132 (52%), Gaps = 10/132 (7%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP- 131
           KE+ +YINS GG V AG+AIY+ ++      + +  G AAS  S +  AG+      +P 
Sbjct: 61  KELDIYINSGGGSVFAGIAIYNMLKRYSGVKTVYVDGLAASAASFIAMAGD---TIIVPK 117

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT-----LDR 186
           NA +++H+      G  +D+    + + K    + +IY++   +  E++EK      +D+
Sbjct: 118 NAYLMIHRAMTIAFGNINDMHSAIELLEKTDNTIADIYMEKKAEN-EDIEKETFINLMDK 176

Query: 187 DHIMSASEACDW 198
           +  ++ +EA  +
Sbjct: 177 ETWLTGTEAVKY 188


>gi|257470301|ref|ZP_05634392.1| peptidase S14, ClpP [Fusobacterium ulcerans ATCC 49185]
 gi|317064512|ref|ZP_07928997.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           ulcerans ATCC 49185]
 gi|313690188|gb|EFS27023.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           ulcerans ATCC 49185]
          Length = 367

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 77/155 (49%), Gaps = 16/155 (10%)

Query: 60  CAQLLF---LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
            + L+F   LE     +++S+ INSPGG ++  +AIY  ++ +     I+ +  G A S 
Sbjct: 36  TSSLIFIKQLEKIKNARKVSIKINSPGGDISETLAIYHELKRLSQTKEITAYIDGMACSA 95

Query: 115 GSLLLSAGE-----KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIY 169
            +L+  A +     KG  F + N  I +     G+S    +++   + + K K  + ++Y
Sbjct: 96  ATLIAIAAKKTVMGKGCYFMIHNPMIYM-----GYSN-TGEMQEAIEHLNKTKENMIDLY 149

Query: 170 VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            +    + E++ K +D +   +A EA + G +D++
Sbjct: 150 EEKSSLSREDIAKKMDEETYFTAQEALEAGFIDEI 184


>gi|308311770|gb|ADO27656.1| clpP [Rhizanthella gardneri]
          Length = 74

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 134 RILLHQPSGGF-SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           R+++HQP+  F   Q  +    A++ +K++  + ++YV+   K    + K ++RD  MSA
Sbjct: 1   RVMIHQPASSFYESQVGEFILEAEEFLKLRETILKVYVQRTSKPLLVISKDIERDVFMSA 60

Query: 193 SEACDWGVVDKV 204
           +EA  +G+VD V
Sbjct: 61  NEALVYGIVDLV 72


>gi|239631128|ref|ZP_04674159.1| phage protein [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|239525593|gb|EEQ64594.1| phage protein [Lactobacillus paracasei subsp. paracasei 8700:2]
          Length = 232

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 2/132 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           ++S+ INS GG+V AG  IY  ++  K P++   +G A S  SL+  AG+  +    P  
Sbjct: 41  DLSVEINSGGGIVDAGSEIYTMLRAYKGPVNVNVVGVAYSAASLIAMAGD--VVAMSPAG 98

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H  SGG  G   D+E  A  + K    +   Y+   G +  E+   +D  + +   
Sbjct: 99  MMMIHNVSGGQMGDYHDMENAADLLKKSNTAMANAYMAKTGLSQTEILDLMDSTYWLDPQ 158

Query: 194 EACDWGVVDKVL 205
            A + G  DK++
Sbjct: 159 TAIEKGFADKMM 170


>gi|191637887|ref|YP_001987053.1| Clp protease domain protein [Lactobacillus casei BL23]
 gi|190712189|emb|CAQ66195.1| Clp protease domain protein [Lactobacillus casei BL23]
 gi|327381956|gb|AEA53432.1| ClpP protease [Lactobacillus casei LC2W]
          Length = 235

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 2/132 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           ++S+ INS GG+V AG  IY  ++  K P++   +G A S  SL+  AG+  +    P  
Sbjct: 44  DLSVEINSGGGIVDAGSEIYTMLRAYKGPVNVNVVGVAYSAASLIAMAGD--VVAMSPAG 101

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H  SGG  G   D+E  A  + K    +   Y+   G +  E+   +D  + +   
Sbjct: 102 MMMIHNVSGGQMGDYHDMENAADLLKKSNTAIANAYMAKTGLSQAEILDLMDSTYWLDPQ 161

Query: 194 EACDWGVVDKVL 205
            A + G  DK++
Sbjct: 162 TAIEKGFADKMM 173


>gi|220927070|ref|YP_002502372.1| peptidase S14 ClpP [Methylobacterium nodulans ORS 2060]
 gi|219951677|gb|ACL62069.1| peptidase S14 ClpP [Methylobacterium nodulans ORS 2060]
          Length = 237

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 4/130 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN-A 133
           I L +NSPGG V A  A+   ++  K  +     G AAS  S L+ A ++    A+ + A
Sbjct: 61  IHLRLNSPGGDVFAARAMKTALEQHKAKVVAHIDGVAASAASFLMLAADE---IAIADGA 117

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H+P     G A ++   A  + K+   +   Y +  GK+ EEV   +  +   SA 
Sbjct: 118 FVMIHEPWSLALGTADEMRASADLLDKVGEAIAADYQRRTGKSAEEVAAWMKAETWFSAD 177

Query: 194 EACDWGVVDK 203
           EA + G  D+
Sbjct: 178 EAIENGFADR 187


>gi|167754301|ref|ZP_02426428.1| hypothetical protein ALIPUT_02594 [Alistipes putredinis DSM 17216]
 gi|167658926|gb|EDS03056.1| hypothetical protein ALIPUT_02594 [Alistipes putredinis DSM 17216]
          Length = 418

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 64/138 (46%), Gaps = 8/138 (5%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM 108
           G+I +  A        FLE       I + INS GG V  GM +Y  +Q    P      
Sbjct: 25  GRITEESAGRFSEAFDFLENIVRPSLIRVLINSEGGSVLHGMTVYAAIQNASVPTECVIE 84

Query: 109 GQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK-IKRRLNE 167
           G AASMGS++ +AG+K   F      +++H P   F    +D E    ++VK    ++  
Sbjct: 85  GMAASMGSVIWAAGDKS--FMRDYGILMIHNP---FLPDENDGE--PSELVKAFTAQIET 137

Query: 168 IYVKNCGKTYEEVEKTLD 185
           IY K  G ++E+V   +D
Sbjct: 138 IYRKRFGLSHEKVRAIMD 155


>gi|255565800|ref|XP_002523889.1| conserved hypothetical protein [Ricinus communis]
 gi|223536819|gb|EEF38458.1| conserved hypothetical protein [Ricinus communis]
          Length = 78

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 134 RILLHQPSGGF-SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           R+++HQP  GF   Q  +    A++++K+   L  IY +  GK    V + ++RD  MSA
Sbjct: 4   RVMIHQPIAGFYEAQIGEFVLEAEELLKLHEILTRIYAQRMGKPLWVVSEDMERDVFMSA 63

Query: 193 SEACDWGVVDKV 204
           +EA   G+VD V
Sbjct: 64  AEAQAHGIVDLV 75


>gi|237742125|ref|ZP_04572606.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           4_1_13]
 gi|229429773|gb|EEO39985.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           4_1_13]
          Length = 367

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 8/137 (5%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQ-FIKP---PISTFCMGQAASMGS-LLLSAGEKGMRF 128
           +I+L INSPGG V     IY+ ++ F K     I+ +  G AAS  S L+L A +  M  
Sbjct: 56  QINLRINSPGGDVFEASTIYNLLKDFAKVNNIQITGYIDGLAASAASFLVLCASKVVMGI 115

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
               A  ++H P     G  +++++  Q +  +K  + +IY        EE+ + ++ + 
Sbjct: 116 G---ALFMIHNPLTYAYGNTAELQKQIQLLDTVKESILDIYCTKSKLNREEIAEKMNNEK 172

Query: 189 IMSASEACDWGVVDKVL 205
              A+EA + G VD+++
Sbjct: 173 WFRANEALEAGFVDEIV 189


>gi|116050125|ref|YP_791059.1| hypothetical protein PA14_36350 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115585346|gb|ABJ11361.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 184

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 11/148 (7%)

Query: 41  KERIVFVTGQIEDHM-ATLI--CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97
           K+ I+  TG I       LI  CA++L  EAE    E+ + I + GG  + G  +Y+ ++
Sbjct: 3   KQHIIHFTGPINSSTCGNLINTCAKILQQEAE----ELRINIATMGGECSYGFTLYNFLR 58

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
            +  PI T  +G   SMG++L  AGE+  R A  +++ L H       G A D  R A+ 
Sbjct: 59  ALPVPIHTHNLGTVESMGNILFLAGER--RSASAHSKFLFHPFHWTLHG-AVDHARMAEY 115

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
            + +   L E+Y +   +   +  + LD
Sbjct: 116 AMSLDYDL-ELYARIVAENTRDAPERLD 142


>gi|21910478|ref|NP_664746.1| putative ClpP protease ATP-dependent protease proteolytic subunit -
           phage associated [Streptococcus pyogenes MGAS315]
 gi|28876226|ref|NP_795465.1| putative ClpP protease ATP-dependent protease proteolytic subunit
           [Streptococcus pyogenes phage 315.2]
 gi|28895825|ref|NP_802175.1| ClpP-like protease [Streptococcus pyogenes SSI-1]
 gi|21904677|gb|AAM79549.1| putative ClpP protease ATP-dependent protease proteolytic subunit -
           phage-associated [Streptococcus pyogenes MGAS315]
 gi|28811074|dbj|BAC64008.1| putative ClpP-like protease [Streptococcus pyogenes SSI-1]
          Length = 221

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 70/133 (52%), Gaps = 3/133 (2%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I L +NS GG+VT G  IY  ++  K  ++    G AAS  S+ +   +K +    P A
Sbjct: 43  DIVLEVNSNGGLVTVGSEIYTALRNYKGKVTAEITGMAASAASVAVMGADKVVMS--PTA 100

Query: 134 RILLHQPSGGF-SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           ++++H+    + +G + D+++ +  +    + +   YV   GK+ +E+   +  +  MSA
Sbjct: 101 QMMVHKALFNWVAGNSDDLDKASNALKSSDKAIVNAYVAKTGKSEDEIMDLMRNETFMSA 160

Query: 193 SEACDWGVVDKVL 205
            EA + G  D+V+
Sbjct: 161 QEAVENGFADEVM 173


>gi|170017407|ref|YP_001728326.1| protease subunit of ATP-dependent Clp protease [Leuconostoc citreum
           KM20]
 gi|169804264|gb|ACA82882.1| Protease subunit of ATP-dependent Clp protease [Leuconostoc citreum
           KM20]
          Length = 229

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 69/132 (52%), Gaps = 2/132 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           ++ + INS GG V A   IY  ++     + T     A S  S++  AG+K ++ + P A
Sbjct: 42  DLEIGINSGGGEVDAANEIYTALRNYPGKVITQIESSAYSAASIIAMAGDK-VQIS-PVA 99

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           ++++H  S    G  +D+++ +  +    + + + Y    G+  EE    +D++  ++A 
Sbjct: 100 QLMIHNASTYAGGNHNDLDKTSNALKSTDKAIAKAYSVKTGRPVEEFLALMDKETWINAD 159

Query: 194 EACDWGVVDKVL 205
           +A + G+VD+V+
Sbjct: 160 DALELGLVDEVM 171


>gi|325276103|ref|ZP_08141914.1| peptidase S14 ClpP [Pseudomonas sp. TJI-51]
 gi|324098767|gb|EGB96802.1| peptidase S14 ClpP [Pseudomonas sp. TJI-51]
          Length = 291

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 8/138 (5%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K+I++ INSPGG V  G+AIY+ ++  K  ++   +G AAS  S +  AG++     +  
Sbjct: 76  KDITVKINSPGGDVFEGLAIYNLLREHKGKVTVQVLGLAASAASFIAMAGDE-----IQI 130

Query: 133 AR---ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           AR   +++H      +G  +D    A  + +I   L +IY    G     +   +D +  
Sbjct: 131 ARAGFMMIHNAWTIAAGDRNDFTEVADFLDQIDATLADIYSVRTGDEVSAMRALMDVETW 190

Query: 190 MSASEACDWGVVDKVLMS 207
           M  S A + G  D +L S
Sbjct: 191 MGGSGAVEAGFADGLLPS 208


>gi|254240611|ref|ZP_04933933.1| hypothetical protein PA2G_01270 [Pseudomonas aeruginosa 2192]
 gi|296389396|ref|ZP_06878871.1| hypothetical protein PaerPAb_14651 [Pseudomonas aeruginosa PAb1]
 gi|313110977|ref|ZP_07796817.1| hypothetical protein PA39016_002870053 [Pseudomonas aeruginosa
           39016]
 gi|126193989|gb|EAZ58052.1| hypothetical protein PA2G_01270 [Pseudomonas aeruginosa 2192]
 gi|310883319|gb|EFQ41913.1| hypothetical protein PA39016_002870053 [Pseudomonas aeruginosa
           39016]
          Length = 184

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 11/148 (7%)

Query: 41  KERIVFVTGQIEDHM-ATLI--CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97
           K+ I+  TG I       LI  CA++L  EAE    E+ + I + GG  + G  +Y+ ++
Sbjct: 3   KQHIIHFTGPINSSTCGNLINTCAKVLQQEAE----ELRINIATMGGECSYGFTLYNFLR 58

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
            +  PI T  +G   SMG++L  AGE+  R A  +++ L H       G A D  R A+ 
Sbjct: 59  ALPVPIHTHNLGTVESMGNILFLAGER--RSASAHSKFLFHPFHWTLHG-AVDHARMAEY 115

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
            + +   L E+Y +   +   +  + LD
Sbjct: 116 AMSLDYDL-ELYARIVAENTRDAPERLD 142


>gi|294839797|ref|ZP_06784480.1| ClpP protease [Acinetobacter sp. 6013113]
 gi|294860199|ref|ZP_06797968.1| ClpP protease [Acinetobacter sp. 6013150]
          Length = 279

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 71/143 (49%), Gaps = 9/143 (6%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           ++ + INSPGG V  G+ IY+ ++  +  ++   +G AAS  S +  A ++     +  A
Sbjct: 74  DVVVNINSPGGDVFEGLTIYNLLREYEGHVTVRVLGLAASAASFIAMAADE-----IQIA 128

Query: 134 R---ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           R    ++H    G  G  +D+   A  + +I   + +IY    G + +E++  +D++  +
Sbjct: 129 RAGFFMIHNAWTGVWGNRNDMRETADFLEQIDETIADIYSIRTGLSIDELKAQMDKESWI 188

Query: 191 SASEACDWGVVDKVLMSRIDIEE 213
           +   + + G  D  L S + +EE
Sbjct: 189 NGKNSVEQGFADSYLDSDV-VEE 210


>gi|302876770|ref|YP_003845403.1| peptidase S14 ClpP [Clostridium cellulovorans 743B]
 gi|302579627|gb|ADL53639.1| peptidase S14 ClpP [Clostridium cellulovorans 743B]
          Length = 257

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 81/166 (48%), Gaps = 4/166 (2%)

Query: 42  ERIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           ER +F+ G I  E      +  QL   E    + +I+++INSPGG   A   IY+ +   
Sbjct: 19  ERTLFLNGTIAEESWFDDDVTPQLFKDELNAGEGDITVWINSPGGDCVAAAQIYNMLSNY 78

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
           K  ++    G AAS  S++  AG++ +    P + +++H P     G  +++++    + 
Sbjct: 79  KGKVTVKIDGIAASAASVIAMAGKEVLMS--PVSMLMIHNPMTIAMGDHAEMQKAIDMLA 136

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           ++K  +   YV   G +  ++   +D +  M+A++A + G  D  L
Sbjct: 137 EVKESIINAYVLKTGLSRAKLSHLMDSETWMNANKAVELGFADGTL 182


>gi|15597385|ref|NP_250879.1| hypothetical protein PA2189 [Pseudomonas aeruginosa PAO1]
 gi|107101615|ref|ZP_01365533.1| hypothetical protein PaerPA_01002659 [Pseudomonas aeruginosa PACS2]
 gi|218891858|ref|YP_002440725.1| hypothetical protein PLES_31361 [Pseudomonas aeruginosa LESB58]
 gi|254235215|ref|ZP_04928538.1| hypothetical protein PACG_01105 [Pseudomonas aeruginosa C3719]
 gi|9948210|gb|AAG05577.1|AE004645_11 hypothetical protein PA2189 [Pseudomonas aeruginosa PAO1]
 gi|126167146|gb|EAZ52657.1| hypothetical protein PACG_01105 [Pseudomonas aeruginosa C3719]
 gi|218772084|emb|CAW27863.1| hypothetical protein PLES_31361 [Pseudomonas aeruginosa LESB58]
          Length = 184

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 11/148 (7%)

Query: 41  KERIVFVTGQIEDHM-ATLI--CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97
           K+ I+  TG I       LI  CA++L  EAE    E+ + I + GG  + G  +Y+ ++
Sbjct: 3   KQHIIHFTGPINSSTCGNLINTCAKVLQQEAE----ELRINIATMGGECSYGFTLYNFLR 58

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
            +  PI T  +G   SMG++L  AGE+  R A  +++ L H       G A D  R A+ 
Sbjct: 59  ALPVPIHTHNLGTVESMGNILFLAGER--RSASAHSKFLFHPFHWTLHG-AVDHARMAEY 115

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
            + +   L E+Y +   +   +  + LD
Sbjct: 116 AMSLDYDL-ELYARIVAENTRDAPERLD 142


>gi|294795017|ref|ZP_06760152.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP
           [Veillonella sp. 3_1_44]
 gi|294454379|gb|EFG22753.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP
           [Veillonella sp. 3_1_44]
          Length = 363

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 74/142 (52%), Gaps = 7/142 (4%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP- 131
            ++++ INS GG V A  AI++ ++     ++    G  AS  +++  A +K     +P 
Sbjct: 55  NDLTMRINSGGGDVFAAQAIHNMIKAYAGKVTAHIDGLCASAATIIACAADK---VIMPR 111

Query: 132 NARILLHQPSG--GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK-TYEEVEKTLDRDH 188
           NA  ++H PS   G S  A  + + A  +  +K+ +  +Y+      T E+V+  +D + 
Sbjct: 112 NALYMIHNPSVYLGDSFDADGLTKMANYLASVKQTIANVYLSRSDVLTSEQVKTLMDDET 171

Query: 189 IMSASEACDWGVVDKVLMSRID 210
            ++A EA  +G++D+V  + +D
Sbjct: 172 WLTADEAKSYGLIDEVDTAIMD 193


>gi|226948757|ref|YP_002803848.1| serine protease [Clostridium botulinum A2 str. Kyoto]
 gi|226843453|gb|ACO86119.1| serine protease [Clostridium botulinum A2 str. Kyoto]
          Length = 253

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 72/140 (51%), Gaps = 9/140 (6%)

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           FL+  N    + +YINS GG V AG+AIY  ++      +    G AAS+ S++  AG+K
Sbjct: 61  FLKELNSFDNLDIYINSGGGSVFAGIAIYHQLKRHNGFKTVHIDGIAASITSVISCAGDK 120

Query: 125 GMRFALP-NARILLHQPSGGF---SGQASDIERHAQDIVKIKRRLNEIYVKNCGK--TYE 178
            +   +P +A+ ++H+P+  +   S  A ++ + A  +   +  +  IY++N  +  T E
Sbjct: 121 VI---IPKSAQFMIHKPTASYFWTSLNADELRKEADTLDICQDSIRNIYMENVKEDITEE 177

Query: 179 EVEKTLDRDHIMSASEACDW 198
           E+   ++ +   +     D+
Sbjct: 178 EINNLINAETWFTGETVTDY 197


>gi|330975103|gb|EGH75169.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. aptata str. DSM 50252]
          Length = 61

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 37/55 (67%)

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           HA++I+ I+ RLN +   + G++ E +E+  +RD+ MSA  A ++G++D V+  R
Sbjct: 3   HAKEILHIRHRLNSLLAHHTGQSLETIERDTERDNFMSAERAAEYGLIDSVINKR 57


>gi|261209692|ref|ZP_05924019.1| peptidase S14 [Enterococcus faecium TC 6]
 gi|289566819|ref|ZP_06447230.1| peptidase S14 [Enterococcus faecium D344SRF]
 gi|260076352|gb|EEW64152.1| peptidase S14 [Enterococcus faecium TC 6]
 gi|289161396|gb|EFD09285.1| peptidase S14 [Enterococcus faecium D344SRF]
          Length = 231

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 72/140 (51%), Gaps = 2/140 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L++   Q+EI + INS GG V  G+AI + ++  K  I+    G AAS  S++  AG+  
Sbjct: 46  LDSLGDQEEIEVVINSNGGDVFQGIAIGNLLKSNKAKINVVINGLAASAASIIAMAGDTV 105

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
             +   NA++++H+ S    G   D    A  +  I + +   Y      T E +++ L+
Sbjct: 106 KIY--NNAQLMIHRASTYGEGNVDDFRTIADQLESIDKSVKASYKTRFNGTDEALQELLE 163

Query: 186 RDHIMSASEACDWGVVDKVL 205
           ++  M A  A  +G+VD+++
Sbjct: 164 KESFMDAETALSYGLVDEII 183


>gi|116630106|ref|YP_815278.1| protease subunit of ATP-dependent Clp protease [Lactobacillus
           gasseri ATCC 33323]
 gi|238854143|ref|ZP_04644490.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP
           [Lactobacillus gasseri 202-4]
 gi|116095688|gb|ABJ60840.1| Protease subunit of ATP-dependent Clp protease [Lactobacillus
           gasseri ATCC 33323]
 gi|238833219|gb|EEQ25509.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP
           [Lactobacillus gasseri 202-4]
          Length = 223

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 81/180 (45%), Gaps = 4/180 (2%)

Query: 36  YSRLLKERIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           +S    +R++ + G I  +  +   +  Q+   E    +  I L++NSPGG   A   IY
Sbjct: 7   WSGPQNQRVLTINGTIAEDSWVDDEVTPQVFQDELSQGKGPIDLWLNSPGGDCVAASRIY 66

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
             +      ++    G AAS  S++  AG K     +P A I++H P     GQ  D+++
Sbjct: 67  TMLMNYPDNVNVKIDGIAASAASVIAMAGTK--VSMVPTAMIMIHNPLTIVGGQKEDLDQ 124

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
            AQ + + K  +   Y        E++   +D +  M+ ++A + G  D +L    D+ +
Sbjct: 125 AAQMLAETKESIINAYELKTNLPREKISSMMDDETWMNVNKAIELGFADDMLGQNKDVTD 184


>gi|42391864|dbj|BAD08696.1| putative ClpP protease [Delftia acidovorans]
          Length = 281

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 2/135 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           +++++ +NSPGG    GMAIY+ ++  K  ++   +G AAS+ S++  AG++ +      
Sbjct: 75  RDVTVNLNSPGGDFFEGMAIYNLLREHKAKVTIRVLGVAASVASVIAMAGDEILMG--DG 132

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           + +++H       G   D+   A  +      +  +Y    G T  E    +DR+  + A
Sbjct: 133 SFLMIHNAWAVAVGNRHDMTDTAAVLAPFDAAMAALYAHRSGITEAEAAMLMDRETWIGA 192

Query: 193 SEACDWGVVDKVLMS 207
            +A D G    +L S
Sbjct: 193 QQAVDDGFASGLLPS 207


>gi|298694394|gb|ADI97616.1| Prophage Clp protease-like protein [Staphylococcus aureus subsp.
           aureus ED133]
          Length = 245

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 73/143 (51%), Gaps = 2/143 (1%)

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
           C + +  + E   +++ + INS GG + AG  IY  ++  K  ++      AAS  SL+ 
Sbjct: 27  CPKDVLTQLEFSDEDVDIIINSNGGNLVAGSEIYTHLRAHKGKVNVRITAIAASAASLIA 86

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
            AG+  +  + P AR+++H PS    G+  D+   A+ +  + + + E Y    GK  +E
Sbjct: 87  MAGDH-IEMS-PVARMMIHNPSSIAQGEVKDLNHAAETLEHVGQIMAEAYAVRAGKNKQE 144

Query: 180 VEKTLDRDHIMSASEACDWGVVD 202
           + + + ++  ++A EA + G  D
Sbjct: 145 LVEMMAKETWLNADEAIEQGFAD 167


>gi|91794597|ref|YP_564248.1| peptidase S14, ClpP [Shewanella denitrificans OS217]
 gi|91716599|gb|ABE56525.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella
           denitrificans OS217]
          Length = 667

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 72/144 (50%), Gaps = 8/144 (5%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM-GQAASMGSLLLSAGEK 124
           L A     ++  YI S GG V  GMAIY+ +    P   + C+   AASM S++  A + 
Sbjct: 40  LRAMGKITQLKAYIQSGGGDVMDGMAIYNILARW-PCQKSICIESVAASMASVICMAFDT 98

Query: 125 GMRFALP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYV-KNCGK-TYEEVE 181
                +P NA +++H   GG  G A D+  +A  + K +  + + Y  K  GK + E++ 
Sbjct: 99  ---VIMPSNAFLMIHSNWGGAVGTADDLREYADLLDKWRSSMGKAYQDKAAGKLSDEQLA 155

Query: 182 KTLDRDHIMSASEACDWGVVDKVL 205
           +    D  ++A EA   G+ D+V+
Sbjct: 156 QFFKEDTWLTAQEAVALGLADEVI 179


>gi|323976874|gb|EGB71962.1| hypothetical protein ERFG_02663 [Escherichia coli TW10509]
          Length = 186

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 2/80 (2%)

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
           P  EI LYI+S GG   +G   Y+ ++ +   ++T  +    S+ +++  AGE  +R A 
Sbjct: 33  PATEIKLYISSKGGDTVSGFTAYNFLKSLGVKVTTHNLSNVESIANVIYMAGE--VRTAN 90

Query: 131 PNARILLHQPSGGFSGQASD 150
           P +R LLH    GF+  ++D
Sbjct: 91  PLSRFLLHPLHWGFAAPSAD 110


>gi|302386147|ref|YP_003821969.1| peptidase S14 ClpP [Clostridium saccharolyticum WM1]
 gi|302196775|gb|ADL04346.1| peptidase S14 ClpP [Clostridium saccharolyticum WM1]
          Length = 236

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 82/174 (47%), Gaps = 4/174 (2%)

Query: 43  RIVFVTGQIEDHM--ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           R +++ G+I D       +  +L   E  +   +I+++INS GG V A   IY+ +   K
Sbjct: 17  RTLYLDGEISDETWYGDEVTPELFRRELVSGNGDITVWINSSGGDVFAAAQIYNMLMDYK 76

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
             ++      AAS  S++  AG   ++ + P A +++H P     G + ++++    + +
Sbjct: 77  GNVTVKVDALAASAASVIAMAGTT-VQMS-PVAMMMIHNPMTVAIGDSEEMKKAGAMLDE 134

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           +K  +   Y    G    +V   +D +   +A +A + G  D++L ++    EK
Sbjct: 135 VKESIMNAYEIKTGLNRTKVSHLMDAESWFNARKAVELGFADEILENKSGNREK 188


>gi|289578373|ref|YP_003477000.1| peptidase S14 ClpP [Thermoanaerobacter italicus Ab9]
 gi|297544650|ref|YP_003676952.1| peptidase S14 ClpP [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
 gi|289528086|gb|ADD02438.1| peptidase S14 ClpP [Thermoanaerobacter italicus Ab9]
 gi|296842425|gb|ADH60941.1| peptidase S14 ClpP [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
          Length = 233

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 24/177 (13%)

Query: 47  VTGQIEDHMATL----------ICAQLLFLEAENPQ-KEISLYINSPGGVVTAGMAIYDT 95
           + GQIE HM             I  QL+ +E ENP  K + + +N+ GG V AG+AI + 
Sbjct: 42  IIGQIEGHMILPPQNKTTKYEHIIPQLVAIE-ENPNIKGVLILLNTVGGDVEAGLAIAEM 100

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           +  +  P  +  +G   S+G  L  A      + +P+A + +H      +G    + +  
Sbjct: 101 IASLSKPTVSIVLGGGHSIGVPL--AVSANYSYIVPSATMTIHPIR--MTGMVVGVPQTF 156

Query: 156 QDIVKIKRRLNEIYVKNCG---KTYEEV-----EKTLDRDHIMSASEACDWGVVDKV 204
               K++ R+ E  V+N     +T+ E+     E   D   I+   EA D+G++D++
Sbjct: 157 DYFNKMQDRIVEFIVRNSKIKRETFMELMLKTGELANDIGTILVGKEAVDYGLIDEI 213


>gi|254195020|ref|ZP_04901449.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei S13]
 gi|254195945|ref|ZP_04902371.1| Clp protease [Burkholderia pseudomallei S13]
 gi|254197217|ref|ZP_04903639.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei S13]
 gi|169651768|gb|EDS84461.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei S13]
 gi|169652690|gb|EDS85383.1| Clp protease [Burkholderia pseudomallei S13]
 gi|169653958|gb|EDS86651.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei S13]
          Length = 366

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 68/131 (51%), Gaps = 4/131 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I++ INS GG V    AIY+ ++     +     G AAS  SL+L A ++     +P NA
Sbjct: 54  ITVAINSMGGDVFDAFAIYNALRRYAGKVKGRVDGIAASAASLVLMACDE---IEMPENA 110

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H P    +G++ D+ R A+ +      +   YV+  G + ++V   +D +  ++A+
Sbjct: 111 LLMIHHPHTVAAGESKDLRRVAELLDNASAGILAAYVQRSGLSEDDVRAMMDAETWLTAA 170

Query: 194 EACDWGVVDKV 204
           +A + G  D +
Sbjct: 171 QAKEKGFCDVI 181


>gi|41189530|ref|NP_958605.1| 77ORF015 [Staphylococcus phage 77]
 gi|40557231|gb|AAR87887.1| 77ORF015 [Staphylococcus phage 77]
          Length = 245

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 73/143 (51%), Gaps = 2/143 (1%)

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
           C + +  + E   +++ + INS GG + AG  IY  ++  K  ++      AAS  SL+ 
Sbjct: 27  CPKDVLTQLEFSDEDVDIIINSNGGNLVAGSEIYTHLRAHKGKVNVRITAIAASAASLIA 86

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
            AG+  +  + P AR+++H PS    G+  D+   A+ +  + + + E Y    GK  +E
Sbjct: 87  MAGDH-IEMS-PVARMMIHNPSSIAQGEVKDLNHAAETLEHVGQIMAEAYAVRAGKNKQE 144

Query: 180 VEKTLDRDHIMSASEACDWGVVD 202
           + + + ++  ++A EA + G  D
Sbjct: 145 LIEMMAKETWLNADEAIEQGFAD 167


>gi|21359778|gb|AAM49612.1|AF513857_3 phiN315 scaffolding protein-like protein [Staphylococcus phage
           phi77]
          Length = 245

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 73/143 (51%), Gaps = 2/143 (1%)

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
           C + +  + E   +++ + INS GG + AG  IY  ++  K  ++      AAS  SL+ 
Sbjct: 27  CPKDVLTQLEFSDEDVDIIINSNGGNLVAGSEIYTHLRAHKGKVNVRITAIAASAASLIA 86

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
            AG+  +  + P AR+++H PS    G+  D+   A+ +  + + + E Y    GK  +E
Sbjct: 87  MAGDH-IEMS-PVARMMIHNPSSIAQGEVKDLNHAAETLEHVGQIMAEAYAVRAGKNKQE 144

Query: 180 VEKTLDRDHIMSASEACDWGVVD 202
           + + + ++  ++A EA + G  D
Sbjct: 145 LIEMMAKETWLNADEAIEQGFAD 167


>gi|9632942|ref|NP_049970.1| Predicted clp-protease [Streptococcus phage Sfi21]
 gi|5230830|gb|AAD41032.1|AF112470_7 clp-protease [Streptococcus phage Sfi21]
 gi|5524037|gb|AAD44089.1|AF115103_5 orf221 gp [Streptococcus phage Sfi21]
          Length = 224

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 2/138 (1%)

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           A +  +EI+L I S GG V A   IY  ++     I     G AAS  S++  A +  +R
Sbjct: 40  ANDEGEEITLNIASNGGDVFAASEIYTMLKSCGKRIVANVQGLAASAASVISMAADT-VR 98

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
            + P A +++H+ S G  G + D+E  +  +  I   +   Y    G    E+   + ++
Sbjct: 99  IS-PTAHMMIHKASSGLVGNSDDMEHQSVVLNSIDESIALAYEMKTGLKQTELLDLMAKE 157

Query: 188 HIMSASEACDWGVVDKVL 205
             ++A  A D G  D+++
Sbjct: 158 TWLNAKTAVDKGFADEIM 175


>gi|150016096|ref|YP_001308350.1| peptidase S14, ClpP [Clostridium beijerinckii NCIMB 8052]
 gi|149902561|gb|ABR33394.1| peptidase S14, ClpP [Clostridium beijerinckii NCIMB 8052]
          Length = 235

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 87/180 (48%), Gaps = 22/180 (12%)

Query: 43  RIVFVTGQIEDH-------MATL---ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI 92
           +++ + GQIE H        AT    I  QL+ +E  +  K + + +N+ GG V AG+AI
Sbjct: 44  QVLSIIGQIEGHSVLPPQTKATKYEHIIPQLIDIEQNDDAKGLLIVLNTVGGDVEAGLAI 103

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIE 152
            + ++ +  P  +  +G   S+G  L ++ +    F  P+A +++H      +G    + 
Sbjct: 104 SEMIRSMSKPTVSIVIGGGHSIGVPLATSAD--FSFITPSATMIVHPVR--MNGFVIGVS 159

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEK-TLDRDHIMS-------ASEACDWGVVDKV 204
           +  +   K++ R+NE  V+      + +E+  L  D +++         +A D G++D+V
Sbjct: 160 QTFEYFKKMQERINEFIVRTSNIKPDTLERFMLQTDDLLNDVGTMLIGKQAVDCGLIDQV 219


>gi|323705387|ref|ZP_08116962.1| peptidase S14 ClpP [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535289|gb|EGB25065.1| peptidase S14 ClpP [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 232

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 24/177 (13%)

Query: 47  VTGQIEDHMATL----------ICAQLLFLEAENPQ-KEISLYINSPGGVVTAGMAIYDT 95
           + GQIE HM             I  QL+ +E ENPQ K + + +N+ GG V AG+AI + 
Sbjct: 41  IIGQIEGHMILPPQNKTTKYEHIIPQLVAIE-ENPQIKGLLILLNTVGGDVEAGLAIAEM 99

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           +  +  P  +  +G   S+G  L  A      F +P+A + +H      +G    + +  
Sbjct: 100 ISSLSKPTVSIVLGGGHSIGVPL--AVSSNYSFIVPSATMTIHPIR--MTGLVIGVPQTF 155

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEV--------EKTLDRDHIMSASEACDWGVVDKV 204
               K++ R+ E  ++N     +          E   D   I+   EA D+G++D+V
Sbjct: 156 DYFNKMQDRIVEFVIRNSRIKRDAFMNLMLKIGELANDVGTILVGKEAVDYGLIDEV 212


>gi|9635590|ref|NP_061501.1| ClpP protease [Pseudomonas phage D3]
 gi|5059251|gb|AAD38956.1| ClpP protease [Pseudomonas phage D3]
          Length = 296

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 66/134 (49%), Gaps = 2/134 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           ++++ INSPGG V  G+AIY+ ++  K  ++   +G AAS  S +  AG++ +R     A
Sbjct: 79  DVTVNINSPGGDVFEGLAIYNLLREHKGKVTVNIIGLAASAASFIAMAGDE-IRIGRA-A 136

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H       G  +D+   A  +      L +IY +      +++ K +D +  +   
Sbjct: 137 FLMIHNAWLIAMGNRNDLREIADWLEPFDMTLADIYAQRTEIDIDDIVKQMDAETWIGGR 196

Query: 194 EACDWGVVDKVLMS 207
           EA D G  D  L S
Sbjct: 197 EAVDKGWADAFLES 210


>gi|313111246|ref|ZP_07797064.1| ClpP protease [Pseudomonas aeruginosa 39016]
 gi|310883566|gb|EFQ42160.1| ClpP protease [Pseudomonas aeruginosa 39016]
          Length = 296

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 66/134 (49%), Gaps = 2/134 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           ++ + INSPGG V  G+AIY+ ++  K  ++   +G AAS  S +  AG++ +R     A
Sbjct: 79  DVIVNINSPGGDVFEGLAIYNLLREHKGKVTVNIIGLAASAASFIAMAGDE-IRIGRA-A 136

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H       G  +D+   A  +      L +IY +  G   +++ K ++ +  +   
Sbjct: 137 FLMIHNAWLIAMGNRNDLREIADWLEPFDMTLADIYAQRTGIDLDDIVKQMNAETWIGGR 196

Query: 194 EACDWGVVDKVLMS 207
           EA D G  D  L S
Sbjct: 197 EAVDKGWADAFLES 210


>gi|121603870|ref|YP_981199.1| peptidase S14, ClpP [Polaromonas naphthalenivorans CJ2]
 gi|120592839|gb|ABM36278.1| ATP-dependent Clp protease proteolytic subunit ClpP [Polaromonas
           naphthalenivorans CJ2]
          Length = 641

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 75/152 (49%), Gaps = 15/152 (9%)

Query: 59  ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLL 118
           I +QL +++   P   + + INS GG V+  +AIY+ ++  K  ++   +G A S  +++
Sbjct: 21  IRSQLSYIDDATP---LIVEINSEGGSVSEAVAIYNLLRTWKGGVTVEIVGWALSAATVI 77

Query: 119 LSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYE 178
             AG++    A   + I++H P    SG A  +  +A  + ++   +   Y +       
Sbjct: 78  AMAGQRIKAHA--TSLIMVHAPWTNASGNAGAMRENAALLDQVALTMQAAYART-----R 130

Query: 179 EVEKTL-----DRDHIMSASEACDWGVVDKVL 205
           +  KTL      +DH  +A EA   G+VD+++
Sbjct: 131 QPAKTLAAWMDGQDHWFTAQEALALGLVDEII 162


>gi|257881814|ref|ZP_05661467.1| peptidase S14 [Enterococcus faecium 1,231,502]
 gi|257891949|ref|ZP_05671602.1| peptidase S14 [Enterococcus faecium 1,231,410]
 gi|260562287|ref|ZP_05832801.1| peptidase S14 [Enterococcus faecium C68]
 gi|257817472|gb|EEV44800.1| peptidase S14 [Enterococcus faecium 1,231,502]
 gi|257828309|gb|EEV54935.1| peptidase S14 [Enterococcus faecium 1,231,410]
 gi|260073211|gb|EEW61552.1| peptidase S14 [Enterococcus faecium C68]
          Length = 231

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 72/140 (51%), Gaps = 2/140 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L++   Q+EI + INS GG V  G+AI + ++  K  ++    G AAS  S++  AG+  
Sbjct: 46  LDSLGDQEEIEVVINSNGGDVFQGIAIGNLLKSNKAKVNVVINGLAASAASIIAMAGDTI 105

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
             +   NA++++H+ S    G   D    A  +  I + +   Y      T E +++ L+
Sbjct: 106 KIY--NNAQLMIHRASTYGEGNVDDFRTIADQLESIDKSVKASYKTRFNGTDEALQELLE 163

Query: 186 RDHIMSASEACDWGVVDKVL 205
           ++  M A  A  +G+VD+++
Sbjct: 164 KESFMDAETALSYGLVDEII 183


>gi|167746043|ref|ZP_02418170.1| hypothetical protein ANACAC_00738 [Anaerostipes caccae DSM 14662]
 gi|167654558|gb|EDR98687.1| hypothetical protein ANACAC_00738 [Anaerostipes caccae DSM 14662]
          Length = 222

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 4/163 (2%)

Query: 45  VFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           +F+ G I  E      +  QL   E      +I+++INSPGG   A   IY+ +   K  
Sbjct: 1   MFLNGTIAEESWFDDDVTPQLFRDELNAGSGDITVWINSPGGDCIAAAQIYNMLMEYKGN 60

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIK 162
           +     G AAS  S++  AG K      P + +++H PS G  G  + +++  + + ++K
Sbjct: 61  VIVKIDGIAASAASVIAMAGTK--VCVSPVSMLMIHNPSAGIYGNTAVMQKAIEMLDEVK 118

Query: 163 RRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
             +   Y    G +  ++   +D +  M A+ A + G  D++L
Sbjct: 119 ESIVNAYEIKTGMSRAKISHLMDAETWMDANSAVEMGFADEIL 161


>gi|313156843|gb|EFR56283.1| endopeptidase Clp [Alistipes sp. HGB5]
          Length = 293

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 4/141 (2%)

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AE    E+ + I S GG V   + I+D +  +   I+T C G  AS  +++  A   G R
Sbjct: 51  AEIDAPEVVVNIRSTGGDVNDALLIHDALTALDAHITTRCYGYTASAATIIAQAASPGCR 110

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
               NA  L+H       G A+++      + +   R+  +Y    G+   E E  +  +
Sbjct: 111 EISANALYLIHTAVCATEGNAAELSGKLDLLRQTDTRIAAVYAARSGRPAAEFETLMAEN 170

Query: 188 H----IMSASEACDWGVVDKV 204
           +     +S  EA   G+ D V
Sbjct: 171 NGSGRWLSPEEAVAAGLADVV 191


>gi|300854510|ref|YP_003779494.1| putative protease [Clostridium ljungdahlii DSM 13528]
 gi|300434625|gb|ADK14392.1| predicted protease [Clostridium ljungdahlii DSM 13528]
          Length = 221

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 85/180 (47%), Gaps = 22/180 (12%)

Query: 43  RIVFVTGQIEDHMATL----------ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI 92
           +I+ + GQIE H+             +   L+ +E +   + + + +N+ GG V AG+AI
Sbjct: 30  QILPIIGQIEGHVNLSSETKTTKYEHVIPNLIAIENDKRVEGLLVVLNTVGGDVEAGLAI 89

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIE 152
            + ++ +  P  +  +G   S+G  L +A +    F  P+A +++H      SG    + 
Sbjct: 90  AEMIRSLSKPTVSLVIGGGHSIGVPLATASD--YSFISPSATMIIHPIR--MSGMVIGVP 145

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
           +  +   K++ R+NE  V+    T E++ + +        D   I+   +A + G++D+V
Sbjct: 146 QTFEYFNKMQERINEFIVRTSKITGEKLTELMLQTDELLNDMGTILIGKQAVEQGLIDEV 205


>gi|154482770|ref|ZP_02025218.1| hypothetical protein EUBVEN_00447 [Eubacterium ventriosum ATCC
           27560]
 gi|149736365|gb|EDM52251.1| hypothetical protein EUBVEN_00447 [Eubacterium ventriosum ATCC
           27560]
          Length = 385

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 70/142 (49%), Gaps = 5/142 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           EI++ INS GG V A +AIY  ++  K  IS    G  AS  +++  AG+  +  ++   
Sbjct: 66  EITVRINSGGGDVFAAVAIYTRLKEHKAKISVKIDGWCASAATIIAMAGDT-IEISV-GG 123

Query: 134 RILLHQPSGGFSG--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD-HIM 190
             ++H P  G  G    +D+E   +++  IK+ +   Y+    K+ EE++  +  +    
Sbjct: 124 VFMIHDPLAGLIGYYNTTDLENIVKELETIKQSIVNCYMTVTDKSEEEIKSLMTNEGEWF 183

Query: 191 SASEACDWGVVDKVLMSRIDIE 212
           +  EA + G    V+ + +D E
Sbjct: 184 TGEEAVEAGFCTAVMFTDVDTE 205


>gi|308800044|ref|XP_003074803.1| Clp protease 2 proteolytic subunit (ISS) [Ostreococcus tauri]
 gi|116061343|emb|CAL52061.1| Clp protease 2 proteolytic subunit (ISS) [Ostreococcus tauri]
          Length = 87

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 28/34 (82%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTF 106
           ++I+LYINSPGG VTAGMA++DTM+ +   ++ F
Sbjct: 11  RDITLYINSPGGSVTAGMAVFDTMRHVHASLTPF 44


>gi|293369840|ref|ZP_06616413.1| Clp protease [Bacteroides ovatus SD CMC 3f]
 gi|292635017|gb|EFF53536.1| Clp protease [Bacteroides ovatus SD CMC 3f]
          Length = 353

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 20/141 (14%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE----KGMRF 128
           K++ +YINSPGG       I + ++     I+    G+    G+L+ SA          F
Sbjct: 43  KDVHIYINSPGGECFEANEIVNVIKRFPGKIT----GEG---GALVASAATYIAINCTSF 95

Query: 129 ALP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVK----NCGKTYEEVEKT 183
           ++P N   ++HQ SGG  G+ +DIE      +++ R+LNE Y+      C    +  +  
Sbjct: 96  SMPANGLFMIHQVSGGACGKVADIES----TLEVMRKLNEHYLNAFLSKCTDKKKIKDAW 151

Query: 184 LDRDHIMSASEACDWGVVDKV 204
            + D+ MSA EA + G V +V
Sbjct: 152 DNGDYWMSAQEAKENGFVTEV 172


>gi|314940339|ref|ZP_07847503.1| Clp protease [Enterococcus faecium TX0133a04]
 gi|314942078|ref|ZP_07848935.1| Clp protease [Enterococcus faecium TX0133C]
 gi|314949459|ref|ZP_07852797.1| Clp protease [Enterococcus faecium TX0082]
 gi|314953607|ref|ZP_07856504.1| Clp protease [Enterococcus faecium TX0133A]
 gi|314994363|ref|ZP_07859655.1| Clp protease [Enterococcus faecium TX0133B]
 gi|314997914|ref|ZP_07862814.1| Clp protease [Enterococcus faecium TX0133a01]
 gi|313588077|gb|EFR66922.1| Clp protease [Enterococcus faecium TX0133a01]
 gi|313591228|gb|EFR70073.1| Clp protease [Enterococcus faecium TX0133B]
 gi|313594379|gb|EFR73224.1| Clp protease [Enterococcus faecium TX0133A]
 gi|313599143|gb|EFR77988.1| Clp protease [Enterococcus faecium TX0133C]
 gi|313640458|gb|EFS05038.1| Clp protease [Enterococcus faecium TX0133a04]
 gi|313644157|gb|EFS08737.1| Clp protease [Enterococcus faecium TX0082]
          Length = 225

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 72/140 (51%), Gaps = 2/140 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L++   Q+EI + INS GG V  G+AI + ++  K  ++    G AAS  S++  AG+  
Sbjct: 40  LDSLGDQEEIEVVINSNGGDVFQGIAIGNLLKSNKAKVNVVINGLAASAASIIAMAGDTI 99

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
             +   NA++++H+ S    G   D    A  +  I + +   Y      T E +++ L+
Sbjct: 100 KIY--NNAQLMIHRASTYGEGNVDDFRTIADQLESIDKSVKASYKTRFNGTDEALQELLE 157

Query: 186 RDHIMSASEACDWGVVDKVL 205
           ++  M A  A  +G+VD+++
Sbjct: 158 KESFMDAETALSYGLVDEII 177


>gi|69244669|ref|ZP_00602933.1| Peptidase S14, ClpP [Enterococcus faecium DO]
 gi|258615840|ref|ZP_05713610.1| peptidase S14 ClpP [Enterococcus faecium DO]
 gi|293560412|ref|ZP_06676904.1| Clp protease [Enterococcus faecium E1162]
 gi|294616024|ref|ZP_06695848.1| Clp protease [Enterococcus faecium E1636]
 gi|68196260|gb|EAN10689.1| Peptidase S14, ClpP [Enterococcus faecium DO]
 gi|291591104|gb|EFF22789.1| Clp protease [Enterococcus faecium E1636]
 gi|291605560|gb|EFF35002.1| Clp protease [Enterococcus faecium E1162]
          Length = 228

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 72/140 (51%), Gaps = 2/140 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L++   Q+EI + INS GG V  G+AI + ++  K  ++    G AAS  S++  AG+  
Sbjct: 43  LDSLGDQEEIEVVINSNGGDVFQGIAIGNLLKSNKAKVNVVINGLAASAASIIAMAGDTI 102

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
             +   NA++++H+ S    G   D    A  +  I + +   Y      T E +++ L+
Sbjct: 103 KIY--NNAQLMIHRASTYGEGNVDDFRTIADQLESIDKSVKASYKTRFNGTDEALQELLE 160

Query: 186 RDHIMSASEACDWGVVDKVL 205
           ++  M A  A  +G+VD+++
Sbjct: 161 KESFMDAETALSYGLVDEII 180


>gi|237744773|ref|ZP_04575254.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           7_1]
 gi|229432002|gb|EEO42214.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           7_1]
          Length = 367

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 71/137 (51%), Gaps = 8/137 (5%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQ-FIKP---PISTFCMGQAASMGS-LLLSAGEKGMRF 128
           +I+L +NSPGG V    AIY+ ++ F K     I+ +  G AAS  S L+L A +  M  
Sbjct: 56  QINLRVNSPGGDVFEASAIYNLLKDFAKVNNIQITGYIDGLAASAASFLILCASKIVMGI 115

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
               A  ++H P     G + ++++  + +  +K  + +IY      + EE+ + ++ + 
Sbjct: 116 G---ALFMIHNPLTYAYGNSIELQKQIELLDTVKESILDIYCTKSKLSREEIAEKMNNEK 172

Query: 189 IMSASEACDWGVVDKVL 205
              A+EA + G +D+++
Sbjct: 173 WFRANEALEAGFIDEIV 189


>gi|188590464|ref|YP_001921498.1| peptidase S14, ClpP [Clostridium botulinum E3 str. Alaska E43]
 gi|188500745|gb|ACD53881.1| peptidase S14, ClpP [Clostridium botulinum E3 str. Alaska E43]
          Length = 263

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 72/141 (51%), Gaps = 4/141 (2%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I++++NS GG V   MAI + +      I+    G AAS  S +L+       ++  N 
Sbjct: 59  QINVFVNSYGGSVYEAMAIRNQLMRHSANITGIVDGFAASAASFILTGCNYVKMYS--NT 116

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYV-KNCGKTYEEVE-KTLDRDHIMS 191
             ++H       G A+++ + A D+ KI     + Y+ K+ GK  EE+  + L+ +  ++
Sbjct: 117 MQMIHNMWMPACGNANELRKSADDLDKIMEGNRQAYLQKSNGKLTEEILIELLENETWLT 176

Query: 192 ASEACDWGVVDKVLMSRIDIE 212
           A +   +G+ D+V+   +D+E
Sbjct: 177 AEDCLKYGLCDEVIEESVDLE 197


>gi|109521505|ref|YP_655933.1| gp68 [Mycobacterium phage Wildcat]
 gi|91980957|gb|ABE67673.1| gp68 [Mycobacterium phage Wildcat]
          Length = 185

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 8/127 (6%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK---- 100
           + V+G++         A L   + E+P+    + IN PGG   +G A+Y+ +        
Sbjct: 17  LIVSGELNAESVDFYLATLFEWDQEDPEATWKILINCPGGETESGTALYEELCAYSRRGG 76

Query: 101 --PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
               I T   GQ ASM +LL+ AG+   R +      L H P  G       +   A D+
Sbjct: 77  GTHEIVTVAAGQCASMATLLMQAGD--WRVSGEATTWLFHMPETGVGETMQTMADAAADL 134

Query: 159 VKIKRRL 165
             +K+ +
Sbjct: 135 DHLKKWM 141


>gi|313895631|ref|ZP_07829187.1| endopeptidase Clp [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975757|gb|EFR41216.1| endopeptidase Clp [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 229

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 4/167 (2%)

Query: 41  KERIVFVTGQIEDH--MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           ++R++ + G+I D       +  Q+   E    + +I L+INSPGG   A   IY+ +  
Sbjct: 14  EKRVLLLDGEISDETWWGDEVTPQMFRSELNAAEGDIDLWINSPGGDCYAAAQIYNMLME 73

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
            K  ++    G AAS  S++  AG   +  + P   +++H P     G   ++ER    +
Sbjct: 74  YKGNVAVKIDGIAASAASVVAMAGST-VEIS-PLGMLMIHNPMTVSIGDTHEMERTITFL 131

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            +IK  +   Y    G +  ++ + +D +  M+A +A + G  D VL
Sbjct: 132 AEIKESIINAYELRTGLSRAKISRLMDAETWMNAKKAVELGFADSVL 178


>gi|229120181|ref|ZP_04249432.1| Clp protease [Bacillus cereus 95/8201]
 gi|228663222|gb|EEL18811.1| Clp protease [Bacillus cereus 95/8201]
          Length = 236

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 4/132 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I ++INSPGG V   +AI++  +     I     G AAS  S++  A +K     +P N 
Sbjct: 42  IHVHINSPGGDVFESIAIHNLFKNHNATIIIHIDGLAASGASVIAMAADK---VIMPKNT 98

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H+     +G A  + + A D+ KI   + E Y         E+E  L  +  ++A 
Sbjct: 99  MLMIHKAWTFAAGNAEQLRKVANDLEKIDTAVTESYTSRFVGERSELETLLAEETWLTAE 158

Query: 194 EACDWGVVDKVL 205
           E    G+ D+++
Sbjct: 159 ECLALGLCDEIV 170


>gi|213621477|ref|ZP_03374260.1| hypothetical protein SentesTyp_29737 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 51

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 35/50 (70%)

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           +K+K R+NE+   + G++ E++E+  +RD  +SA EA ++G+VD +L  R
Sbjct: 1   MKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHR 50


>gi|256843130|ref|ZP_05548618.1| ATP-dependent Clp protease, proteolytic subunit [Lactobacillus
           crispatus 125-2-CHN]
 gi|256614550|gb|EEU19751.1| ATP-dependent Clp protease, proteolytic subunit [Lactobacillus
           crispatus 125-2-CHN]
          Length = 239

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 72/160 (45%), Gaps = 4/160 (2%)

Query: 48  TGQIEDHMA-TLICAQLLFLEAENPQ-KEISLYINSPGGVVTAGMAIYDTMQFIKPPIST 105
           TGQ  D+     +  Q++    +  Q  E+ L I S GG V A   IY  +      ++ 
Sbjct: 18  TGQFFDYWGMQCVSPQMVKDSLDKAQGDEVELDIASYGGDVFAASEIYSMINQYSGKVTG 77

Query: 106 FCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRL 165
              G AAS  +++  A +       P  ++++H+ S   +G + D    A  +    R +
Sbjct: 78  VIQGMAASAATIIAEACDH--LVISPAGQMMIHKASTAGAGNSDDFTHTAGVLNTTDRTI 135

Query: 166 NEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
             IY    GK+ EEV   + ++  ++A +A + G  D+++
Sbjct: 136 AGIYQNRTGKSEEEVLNLMKQETYLTAKDAVEQGFADEIM 175


>gi|256026839|ref|ZP_05440673.1| putative Clp protease [Fusobacterium sp. D11]
 gi|289764832|ref|ZP_06524210.1| hypothetical protein PSAG_00434 [Fusobacterium sp. D11]
 gi|289716387|gb|EFD80399.1| hypothetical protein PSAG_00434 [Fusobacterium sp. D11]
          Length = 370

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 6/135 (4%)

Query: 75  ISLYINSPGGVVTAGMAIY----DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
           I+L +NSPGG V    AIY    D  +     I+ +  G AAS  S L+    K +    
Sbjct: 57  INLRVNSPGGDVFEASAIYNLLKDYAKVNNIEITGYIDGLAASAASFLVLCATKVIMGT- 115

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
             A  ++H P     G A  +++  + +  +K  + +IY      + EE+ + ++ +   
Sbjct: 116 -GALYMIHNPLTSAYGNAEKLKKQIELLDTVKEAILDIYCTKSKLSREEISEKMNGEKWY 174

Query: 191 SASEACDWGVVDKVL 205
            ASEA + G VD+++
Sbjct: 175 RASEALEAGFVDEIV 189


>gi|126698922|ref|YP_001087819.1| translocation-enhancing protein TepA [Clostridium difficile 630]
 gi|254974868|ref|ZP_05271340.1| translocation-enhancing protein TepA [Clostridium difficile
           QCD-66c26]
 gi|255092255|ref|ZP_05321733.1| translocation-enhancing protein TepA [Clostridium difficile CIP
           107932]
 gi|255100344|ref|ZP_05329321.1| translocation-enhancing protein TepA [Clostridium difficile
           QCD-63q42]
 gi|255306281|ref|ZP_05350452.1| translocation-enhancing protein TepA [Clostridium difficile ATCC
           43255]
 gi|255313995|ref|ZP_05355578.1| translocation-enhancing protein TepA [Clostridium difficile
           QCD-76w55]
 gi|255516675|ref|ZP_05384351.1| translocation-enhancing protein TepA [Clostridium difficile
           QCD-97b34]
 gi|255649774|ref|ZP_05396676.1| translocation-enhancing protein TepA [Clostridium difficile
           QCD-37x79]
 gi|260682931|ref|YP_003214216.1| translocation-enhancing protein TepA [Clostridium difficile CD196]
 gi|260686529|ref|YP_003217662.1| translocation-enhancing protein TepA [Clostridium difficile R20291]
 gi|306519879|ref|ZP_07406226.1| translocation-enhancing protein TepA [Clostridium difficile
           QCD-32g58]
 gi|115250359|emb|CAJ68181.1| Protein export-enhancing factor [Clostridium difficile]
 gi|260209094|emb|CBA62253.1| translocation-enhancing protein TepA [Clostridium difficile CD196]
 gi|260212545|emb|CBE03509.1| translocation-enhancing protein TepA [Clostridium difficile R20291]
          Length = 244

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 83/178 (46%), Gaps = 22/178 (12%)

Query: 45  VFVTGQIEDHM-------ATL---ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           + + G+IE H        AT    I   L  +E  N  K + + +N+ GG + AG+AI +
Sbjct: 47  ITIIGEIEGHFIGNPQKKATKYEHIIPMLYSIEESNDVKGVLVVLNTVGGDIEAGLAIAE 106

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            +      + T  +G + S+G  L +AG+    F  P A +++H      +G    I   
Sbjct: 107 LLNSTSKKVVTLVLGGSHSIGVPLATAGD--YSFIAPTATMIIHPVR--TTGLVIGINET 162

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTL-DRDHIMS-------ASEACDWGVVDKV 204
            +   K++ R+ +  ++      + +EK + ++D ++S         EA D+G++D+V
Sbjct: 163 FEYFKKMQDRIIQFIIRTSNIKKDVLEKLMHEKDELVSDVGSVLIGKEAVDYGLIDEV 220


>gi|296451320|ref|ZP_06893060.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile NAP08]
 gi|296880328|ref|ZP_06904291.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile NAP07]
 gi|296259926|gb|EFH06781.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile NAP08]
 gi|296428569|gb|EFH14453.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile NAP07]
          Length = 252

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 83/178 (46%), Gaps = 22/178 (12%)

Query: 45  VFVTGQIEDHM-------ATL---ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           + + G+IE H        AT    I   L  +E  N  K + + +N+ GG + AG+AI +
Sbjct: 55  ITIIGEIEGHFIGNPQKKATKYEHIIPMLYSIEESNDVKGVLVVLNTVGGDIEAGLAIAE 114

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            +      + T  +G + S+G  L +AG+    F  P A +++H      +G    I   
Sbjct: 115 LLNSTSKKVVTLVLGGSHSIGVPLATAGD--YSFIAPTATMIIHPVRT--TGLVIGINET 170

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTL-DRDHIMS-------ASEACDWGVVDKV 204
            +   K++ R+ +  ++      + +EK + ++D ++S         EA D+G++D+V
Sbjct: 171 FEYFKKMQDRIIQFIIRTSNIKKDVLEKLMHEKDELVSDVGSVLIGKEAVDYGLIDEV 228


>gi|118588978|ref|ZP_01546385.1| probable Clp protease protein [Stappia aggregata IAM 12614]
 gi|118438307|gb|EAV44941.1| probable Clp protease protein [Stappia aggregata IAM 12614]
          Length = 347

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 71/142 (50%), Gaps = 2/142 (1%)

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           L  L       ++++ +NS GG    G+AIY+ ++  K  ++      AAS  S++  AG
Sbjct: 30  LQALAEHGTDNDLTVLLNSGGGYAFEGIAIYNALKAHKGTVTVKIDAIAASAASVIALAG 89

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
           +  +  A   + +++H PSG   G ASD ++ +  + K+  +++ +Y    GK   EV +
Sbjct: 90  DSIVMRA--GSELMIHDPSGSTYGTASDHDKTSAALNKLAEQMSSLYSARSGKDLAEVRQ 147

Query: 183 TLDRDHIMSASEACDWGVVDKV 204
            +  +   +A EA + G  D+ 
Sbjct: 148 IMKDETWFTAEEAVEAGFADEA 169


>gi|298387203|ref|ZP_06996756.1| ATP-dependent Clp protease [Bacteroides sp. 1_1_14]
 gi|298259872|gb|EFI02743.1| ATP-dependent Clp protease [Bacteroides sp. 1_1_14]
          Length = 353

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 69/141 (48%), Gaps = 20/141 (14%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE----KGMRF 128
           K++ +YINSPGG       I + ++     I+    G+    G+L+ SA          F
Sbjct: 43  KDVHIYINSPGGECFEANEIVNVIKKFPGKIT----GEG---GALVASAATYIAINCTSF 95

Query: 129 ALP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR- 186
           ++P N   ++HQ SGG  G+ +DIE      +++ R+LNE Y+        + +K  D  
Sbjct: 96  SMPANGLFMIHQVSGGACGRVADIE----STLEVMRKLNEHYLNAFLSKCTDKKKIRDAW 151

Query: 187 ---DHIMSASEACDWGVVDKV 204
              D+ MSA EA + G V +V
Sbjct: 152 EKGDYWMSAQEAKENGFVTEV 172


>gi|89894720|ref|YP_518207.1| hypothetical protein DSY1974 [Desulfitobacterium hafniense Y51]
 gi|89334168|dbj|BAE83763.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 209

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 82/178 (46%), Gaps = 26/178 (14%)

Query: 47  VTGQIEDHMATLICAQL-----------LFLEAENPQKE-ISLYINSPGGVVTAGMAIYD 94
           V GQIE H   ++ AQ            LF   +NP+ E I L +N+ GG V AG+AI +
Sbjct: 18  VVGQIEGHQ--VLSAQTKATKYEHVIPQLFAVEQNPKVEGILLILNTAGGDVEAGLAISE 75

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            +  +  P  +  +G   S+G  +  + ++   F  P   + LH     ++G   +  + 
Sbjct: 76  LVSSLSKPSVSIVLGGGHSIGIPIAVSCDR--SFIAPTGTMTLHPIR--YTGLVINGHQQ 131

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
              + K++ R+N   +++   T E+++K +        D   I+   +A D G++D V
Sbjct: 132 FDYLQKMQERINSFIIQHSRITEEQLKKLMFATGELAQDIGTILIGQDAVDIGLIDAV 189


>gi|331090181|ref|ZP_08339069.1| hypothetical protein HMPREF1025_02652 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330402127|gb|EGG81699.1| hypothetical protein HMPREF1025_02652 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 229

 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 4/166 (2%)

Query: 42  ERIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           ER +F+ G I  E      I  QL   E      +I+++INSPGG   A   IY+ +   
Sbjct: 2   ERTLFLNGTIAEESWFDDDITPQLFKEELMAGSGDITVWINSPGGDCVAAAQIYNMLMDY 61

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
           K  ++    G AAS  S++  AG K      P + +++H P     G  +++++  + + 
Sbjct: 62  KGNVTVKIDGIAASAASVIAMAGTK--VLVSPVSMMMIHNPMTVAMGDTAEMQKAIEMLG 119

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            +K  +   Y    G +   +   +D +  M A +A + G  D+VL
Sbjct: 120 SVKDSIINAYEIKTGLSRTRLSHLMDAETWMDAGKAVELGFADEVL 165


>gi|299142816|ref|ZP_07035944.1| ClpP protease [Prevotella oris C735]
 gi|298575684|gb|EFI47562.1| ClpP protease [Prevotella oris C735]
          Length = 365

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 74/149 (49%), Gaps = 18/149 (12%)

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP--PISTFCMGQAASMGSLLLSAGEKGM 126
           E+  +E+ + ++SPGG V AG+ IY   Q IK    ++   +G  AS  + L + G K +
Sbjct: 35  EHQDEEVDIAVSSPGGYVDAGLEIY---QMIKDHGKVNIHILGMTASAATFL-TMGAKSV 90

Query: 127 RFALPNARILLHQPSGGF-SGQASDIE----------RHAQDIVKIKRRLNEIYVKNCGK 175
              +  + +L+H  S      Q+++ E          +   D+  I + +  +Y K  GK
Sbjct: 91  DM-VDGSLMLIHNASTAVREWQSANKEQLDALIAKYQKERDDLNTIDKVIASLYAKKNGK 149

Query: 176 TYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           + +E    + +   +S S+A ++G++DK+
Sbjct: 150 SVDECMDKMQKAAWLSPSDALEFGLIDKI 178


>gi|255655334|ref|ZP_05400743.1| translocation-enhancing protein TepA [Clostridium difficile
           QCD-23m63]
          Length = 244

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 83/178 (46%), Gaps = 22/178 (12%)

Query: 45  VFVTGQIEDHM-------ATL---ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           + + G+IE H        AT    I   L  +E  N  K + + +N+ GG + AG+AI +
Sbjct: 47  ITIIGEIEGHFIGNPQKKATKYEHIIPMLYSIEESNDVKGVLVVLNTVGGDIEAGLAIAE 106

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            +      + T  +G + S+G  L +AG+    F  P A +++H      +G    I   
Sbjct: 107 LLNSTSKKVVTLVLGGSHSIGVPLATAGD--YSFIAPTATMIIHPVR--TTGLVIGINET 162

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTL-DRDHIMS-------ASEACDWGVVDKV 204
            +   K++ R+ +  ++      + +EK + ++D ++S         EA D+G++D+V
Sbjct: 163 FEYFKKMQDRIIQFIIRTSNIKKDVLEKLMHEKDELVSDVGSVLIGKEAVDYGLIDEV 220


>gi|237812956|ref|YP_002897407.1| peptidase S14, ClpP [Burkholderia pseudomallei MSHR346]
 gi|237505260|gb|ACQ97578.1| peptidase S14, ClpP [Burkholderia pseudomallei MSHR346]
          Length = 366

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 67/131 (51%), Gaps = 4/131 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I++ INS GG V    AIY+ ++     +     G AAS  SL+L A ++     +P NA
Sbjct: 54  ITVAINSMGGDVFDAFAIYNALRRYAGKVKGRVDGIAASAASLVLMACDE---IEMPENA 110

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H P    +G++ D+ R A+ +      +   Y +  G + ++V   +D +  ++A+
Sbjct: 111 LLMIHHPHTVAAGESKDLRRVAELLDNASAGILAAYARRSGLSEDDVRAMMDAETWLTAA 170

Query: 194 EACDWGVVDKV 204
           +A + G  D +
Sbjct: 171 QAKEKGFCDVI 181


>gi|291533785|emb|CBL06898.1| hypothetical protein MHY_22570 [Megamonas hypermegale ART12/1]
          Length = 26

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/26 (80%), Positives = 25/26 (96%)

Query: 21 MVVEQTNRGERSYDIYSRLLKERIVF 46
          MVVEQ+ RGER+YDIYSRLLK+RI+F
Sbjct: 1  MVVEQSGRGERAYDIYSRLLKDRIIF 26


>gi|237704834|ref|ZP_04535315.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|226901200|gb|EEH87459.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|315288226|gb|EFU47625.1| Clp protease [Escherichia coli MS 110-3]
          Length = 178

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 78/164 (47%), Gaps = 15/164 (9%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM 108
           GQ+++H  T +              E++++I+S GG   AG   Y+ ++ +   + T  +
Sbjct: 17  GQLQNHCLTAL---------SQGATELNIHISSQGGETAAGFTAYNFLKSLPVTVRTHNI 67

Query: 109 GQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER---HAQDIVKIKRRL 165
               S+ +++  AG +  RFA P +R LLH    GF+  A+D  R   + + +     R 
Sbjct: 68  SNVESIANIVFLAGSE--RFANPLSRFLLHPLLWGFASPAADHARLREYGKCLDNDLDRF 125

Query: 166 NEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
            E +  + G T+      +    I+ A++A + G+++ +  +R+
Sbjct: 126 VETFNIDIG-THIRWASLIADSTILDANKALEHGIINSIKTARL 168


>gi|219669156|ref|YP_002459591.1| peptidase S14 ClpP [Desulfitobacterium hafniense DCB-2]
 gi|219539416|gb|ACL21155.1| peptidase S14 ClpP [Desulfitobacterium hafniense DCB-2]
          Length = 230

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 82/178 (46%), Gaps = 26/178 (14%)

Query: 47  VTGQIEDHMATLICAQL-----------LFLEAENPQKE-ISLYINSPGGVVTAGMAIYD 94
           V GQIE H   ++ AQ            LF   +NP+ E I L +N+ GG V AG+AI +
Sbjct: 39  VVGQIEGHQ--VLSAQTKATKYEHVIPQLFAVEQNPKVEGILLILNTAGGDVEAGLAISE 96

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            +  +  P  +  +G   S+G  +  + ++   F  P   + LH     ++G   +  + 
Sbjct: 97  LVSSLSKPSVSIVLGGGHSIGIPIAVSCDR--SFIAPTGTMTLHPIR--YTGLVINGHQQ 152

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
              + K++ R+N   +++   T E+++K +        D   I+   +A D G++D V
Sbjct: 153 FDYLQKMQERINSFIIQHSQITEEQLKKLMFATGELAQDIGTILIGQDAVDIGLIDAV 210


>gi|253570517|ref|ZP_04847925.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251839466|gb|EES67549.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 353

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 69/141 (48%), Gaps = 20/141 (14%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE----KGMRF 128
           K++ +YINSPGG       I + ++     I+    G+    G+L+ SA          F
Sbjct: 43  KDVHIYINSPGGECFEANEIVNVIKKFPGKIT----GEG---GALVASAATYIAINCTSF 95

Query: 129 ALP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR- 186
           ++P N   ++HQ SGG  G+ +DIE      +++ R+LNE Y+        + +K  D  
Sbjct: 96  SMPANGLFMIHQVSGGACGRVADIE----SALEVMRKLNEHYLNAFLSKCTDKKKIRDAW 151

Query: 187 ---DHIMSASEACDWGVVDKV 204
              D+ MSA EA + G V +V
Sbjct: 152 EKGDYWMSAQEAKENGFVTEV 172


>gi|300704547|ref|YP_003746150.1| phage-related clp protease [Ralstonia solanacearum CFBP2957]
 gi|299072211|emb|CBJ43543.1| phage-related Clp protease [Ralstonia solanacearum CFBP2957]
          Length = 255

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 2/129 (1%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I L +NSPGG V A  A+   ++     I     G AAS  S L+ A ++ +  A   A 
Sbjct: 64  IRLRVNSPGGDVFAARAMEAALRGHSAKIIVHVDGLAASAASFLIMAADE-IEIA-DGAF 121

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++H+      G A D+   A+ + KI   L   Y +  G++ +++   +  +  + A +
Sbjct: 122 IMIHKAWTALWGNADDLRAEAELLDKIDSTLVNTYAQRTGQSADDIATWMATETWLGADD 181

Query: 195 ACDWGVVDK 203
           A + G  D+
Sbjct: 182 AVERGFADR 190


>gi|296159099|ref|ZP_06841926.1| peptidase S14 ClpP [Burkholderia sp. Ch1-1]
 gi|295890660|gb|EFG70451.1| peptidase S14 ClpP [Burkholderia sp. Ch1-1]
          Length = 226

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 3/150 (2%)

Query: 59  ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLL 118
           I  Q +  E ++ +  ++L INSPGG    G A+   +Q     ++    G AAS  + +
Sbjct: 39  IAVQDVIKELKDAKGAVNLRINSPGGDAFDGRALATAIQ-QHGNVTAHIDGLAASAATYV 97

Query: 119 LSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYE 178
             A  K +  A   A +++H       G A+++      + KI   +   Y    GKT +
Sbjct: 98  ALAA-KSVNIA-EGAFMMVHNAWTVAVGNAAELGDTIAMLQKIDTSIANDYAAKTGKTLD 155

Query: 179 EVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           EV+  +D +   +A EA D G+VD ++ ++
Sbjct: 156 EVKAWMDAETWFTAQEAKDAGLVDNIVAAK 185


>gi|167824886|ref|ZP_02456357.1| peptidase S14, ClpP [Burkholderia pseudomallei 9]
 gi|226198878|ref|ZP_03794441.1| peptidase S14, ClpP [Burkholderia pseudomallei Pakistan 9]
 gi|225928978|gb|EEH25002.1| peptidase S14, ClpP [Burkholderia pseudomallei Pakistan 9]
          Length = 364

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 67/131 (51%), Gaps = 4/131 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I++ INS GG V    AIY+ ++     +     G AAS  SL+L A ++     +P NA
Sbjct: 52  ITVAINSMGGDVFDAFAIYNALRRYAGKVKGRVDGIAASAASLVLMACDE---IEMPENA 108

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H P    +G++ D+ R A+ +      +   Y +  G + ++V   +D +  ++A+
Sbjct: 109 LLMIHHPHTVAAGESKDLRRVAELLDNASAGILAAYAQRSGLSEDDVRAMMDAETWLTAA 168

Query: 194 EACDWGVVDKV 204
           +A + G  D +
Sbjct: 169 QAKEKGFCDVI 179


>gi|167814835|ref|ZP_02446515.1| peptidase S14, ClpP [Burkholderia pseudomallei 91]
 gi|167911620|ref|ZP_02498711.1| peptidase S14, ClpP [Burkholderia pseudomallei 112]
          Length = 366

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 67/131 (51%), Gaps = 4/131 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I++ INS GG V    AIY+ ++     +     G AAS  SL+L A ++     +P NA
Sbjct: 54  ITVAINSMGGDVFDAFAIYNALRRYAGKVKGRVDGIAASAASLVLMACDE---IEMPENA 110

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H P    +G++ D+ R A+ +      +   Y +  G + ++V   +D +  ++A+
Sbjct: 111 LLMIHHPHTVAAGESKDLRRVAELLDNASAGILAAYAQRSGLSEDDVRAMMDAETWLTAA 170

Query: 194 EACDWGVVDKV 204
           +A + G  D +
Sbjct: 171 QAKEKGFCDVI 181


>gi|134277934|ref|ZP_01764649.1| Clp protease domain protein [Burkholderia pseudomallei 305]
 gi|134251584|gb|EBA51663.1| Clp protease domain protein [Burkholderia pseudomallei 305]
          Length = 359

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 67/131 (51%), Gaps = 4/131 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I++ INS GG V    AIY+ ++     +     G AAS  SL+L A ++     +P NA
Sbjct: 54  ITVAINSMGGDVFDAFAIYNALRRYAGKVKGRVDGIAASAASLVLMACDE---IEMPENA 110

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H P    +G++ D+ R A+ +      +   Y +  G + ++V   +D +  ++A+
Sbjct: 111 LLMIHHPHTVAAGESKDLRRVAELLDNASAGILAAYAQRSGLSEDDVRAMMDAETWLTAA 170

Query: 194 EACDWGVVDKV 204
           +A + G  D +
Sbjct: 171 QAKEKGFCDVI 181


>gi|167619474|ref|ZP_02388105.1| peptidase S14, ClpP [Burkholderia thailandensis Bt4]
          Length = 366

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 67/131 (51%), Gaps = 4/131 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I++ INS GG V    AIY+ ++     +     G AAS  SL+L A ++     +P NA
Sbjct: 54  ITVAINSMGGDVFDAFAIYNALRRYAGKVKGRVDGIAASAASLVLMACDE---IEMPENA 110

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H P    +G++ D+ R A+ +      +   Y +  G + ++V   +D +  ++A+
Sbjct: 111 LLMIHHPHTVAAGESKDLRRVAELLDNASAGILAAYAQRSGLSEDDVRAMMDAETWLTAA 170

Query: 194 EACDWGVVDKV 204
           +A + G  D +
Sbjct: 171 QAKEKGFCDVI 181


>gi|167725633|ref|ZP_02408869.1| peptidase S14, ClpP [Burkholderia pseudomallei DM98]
          Length = 366

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 67/131 (51%), Gaps = 4/131 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I++ INS GG V    AIY+ ++     +     G AAS  SL+L A ++     +P NA
Sbjct: 54  ITVAINSMGGDVFDAFAIYNALRRYAGKVKGRVDGIAASAASLVLMACDE---IEMPENA 110

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H P    +G++ D+ R A+ +      +   Y +  G + ++V   +D +  ++A+
Sbjct: 111 LLMIHHPHTVAAGESKDLRRVAELLDNASAGILAAYAQRSGLSEDDVRAMMDAETWLTAA 170

Query: 194 EACDWGVVDKV 204
           +A + G  D +
Sbjct: 171 QAKEKGFCDVI 181


>gi|298253816|ref|ZP_06977405.1| ATP-dependent Clp, protease subunit [Gardnerella vaginalis 5-1]
 gi|297532152|gb|EFH71125.1| ATP-dependent Clp, protease subunit [Gardnerella vaginalis 5-1]
          Length = 244

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 4/166 (2%)

Query: 42  ERIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           ER +F+ G I  E      I  QL   E       I+++INSPGG   A   IY+ +   
Sbjct: 21  ERTLFLNGTIAEESWFDDDITPQLFKDELNAGSGNITVWINSPGGDCVAAAQIYNMLMDY 80

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
           K  ++    G AAS  S++  AG K   +  P + +++H P     G   ++E+    + 
Sbjct: 81  KGCVTVKIDGIAASAASVIAMAGTK--VYMSPVSMLMIHNPMTVAFGNRDEMEKAISMLD 138

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           ++K  +   Y    G    ++   +D +  M A++A + G  D VL
Sbjct: 139 EVKESIINAYEIKTGLNRVKLSHLMDSETWMDANKAVELGFADGVL 184


>gi|167744552|ref|ZP_02417326.1| peptidase S14, ClpP [Burkholderia pseudomallei 14]
          Length = 366

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 67/131 (51%), Gaps = 4/131 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I++ INS GG V    AIY+ ++     +     G AAS  SL+L A ++     +P NA
Sbjct: 54  ITVAINSMGGDVFDAFAIYNALRRYAGKVKGRVDGIAASAASLVLMACDE---IEMPENA 110

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H P    +G++ D+ R A+ +      +   Y +  G + ++V   +D +  ++A+
Sbjct: 111 LLMIHHPHTVAAGESKDLRRVAELLDNASAGILAAYAQRSGLSEDDVRAMMDAETWLTAA 170

Query: 194 EACDWGVVDKV 204
           +A + G  D +
Sbjct: 171 QAKEKGFCDVI 181


>gi|167893326|ref|ZP_02480728.1| peptidase S14, ClpP [Burkholderia pseudomallei 7894]
          Length = 358

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 67/131 (51%), Gaps = 4/131 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I++ INS GG V    AIY+ ++     +     G AAS  SL+L A ++     +P NA
Sbjct: 54  ITVAINSMGGDVFDAFAIYNALRRYAGKVKGRVDGIAASAASLVLMACDE---IEMPENA 110

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H P    +G++ D+ R A+ +      +   Y +  G + ++V   +D +  ++A+
Sbjct: 111 LLMIHHPHTVAAGESKDLRRVAELLDNASAGILAAYAQRSGLSEDDVRAMMDAETWLTAA 170

Query: 194 EACDWGVVDKV 204
           +A + G  D +
Sbjct: 171 QAKEKGFCDVI 181


>gi|297242697|ref|ZP_06926635.1| ATP-dependent Clp, protease subunit [Gardnerella vaginalis AMD]
 gi|296888908|gb|EFH27642.1| ATP-dependent Clp, protease subunit [Gardnerella vaginalis AMD]
          Length = 244

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 4/166 (2%)

Query: 42  ERIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           ER +F+ G I  E      I  QL   E       I+++INSPGG   A   IY+ +   
Sbjct: 21  ERTLFLNGTIAEESWFDDDITPQLFKDELNAGSGNITVWINSPGGDCVAAAQIYNMLMDY 80

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
           K  ++    G AAS  S++  AG K   +  P + +++H P     G   ++E+    + 
Sbjct: 81  KGCVTVKIDGIAASAASVIAMAGTK--VYMSPVSMLMIHNPMTVAFGNRDEMEKAISMLD 138

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           ++K  +   Y    G    ++   +D +  M A++A + G  D VL
Sbjct: 139 EVKESIINAYEIKTGLNRVKLSHLMDSETWMDANKAVELGFADGVL 184


>gi|167766697|ref|ZP_02438750.1| hypothetical protein CLOSS21_01203 [Clostridium sp. SS2/1]
 gi|317497526|ref|ZP_07955845.1| Clp protease [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167711634|gb|EDS22213.1| hypothetical protein CLOSS21_01203 [Clostridium sp. SS2/1]
 gi|291558361|emb|CBL37161.1| Protease subunit of ATP-dependent Clp proteases [butyrate-producing
           bacterium SSC/2]
 gi|316895209|gb|EFV17372.1| Clp protease [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 216

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 87/188 (46%), Gaps = 29/188 (15%)

Query: 40  LKERIVF---VTGQIEDHMATLICAQ----------LLFLEAENPQKEISLYINSPGGVV 86
           L+E  +F   + G+IE H  +   A+          L  +E +   K I + IN+ GG V
Sbjct: 15  LQENGIFTMTIIGEIEGHQLSAQNAKTTKYEHMIPALAKVEQDESIKGILILINTIGGDV 74

Query: 87  TAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH--QPSGGF 144
             G+AI + +  +  P  +  +G + S+G  L  A +    F + +A +++H  + SG F
Sbjct: 75  ECGLAIAELIASLSKPTVSLVLGGSHSIGVPLAVAADH--SFIVKSATMMIHPVRSSGTF 132

Query: 145 SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDHIMSASEAC 196
            G    + +  ++I KI+ R+      +C    E VE+ +        D   I+S  EA 
Sbjct: 133 IG----VIQSYRNIEKIQDRITTFISDHCKMKKERVEELMLHIGQQVKDVGMILSGEEAV 188

Query: 197 DWGVVDKV 204
             G++D++
Sbjct: 189 KEGLIDEM 196


>gi|304316850|ref|YP_003851995.1| peptidase S14 ClpP [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
 gi|302778352|gb|ADL68911.1| peptidase S14 ClpP [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
          Length = 233

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 79/177 (44%), Gaps = 24/177 (13%)

Query: 47  VTGQIEDHMATL----------ICAQLLFLEAENPQ-KEISLYINSPGGVVTAGMAIYDT 95
           + GQIE H+             I  QL+ +E ENPQ K + + +N+ GG V AG+AI + 
Sbjct: 41  IIGQIEGHLILPPQNKTTKYEHIIPQLVAIE-ENPQIKGLLILLNTVGGDVEAGLAIAEM 99

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           +  +  P  +  +G   S+G  L  A      F +P+A + +H      +G    + +  
Sbjct: 100 ISSLSKPTVSIVLGGGHSIGVPL--AVSSNYSFIVPSATMTIHPIR--MTGLVIGVPQTF 155

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEV--------EKTLDRDHIMSASEACDWGVVDKV 204
               K++ R+ E  ++N     +          E   D   I+   EA D+G++D+V
Sbjct: 156 DYFNKMQDRIVEFVIRNSRIKRDAFMNLMLKIGELANDVGTILVGKEAVDYGLIDEV 212


>gi|312898086|ref|ZP_07757484.1| Clp protease [Megasphaera micronuciformis F0359]
 gi|310620819|gb|EFQ04381.1| Clp protease [Megasphaera micronuciformis F0359]
          Length = 159

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 2/91 (2%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K++++YINS GG V AGMAI + ++           G AAS+ S++  A +    +   N
Sbjct: 65  KDLTIYINSDGGSVPAGMAIANMIKRHDGHTVGVVDGWAASIASVIFMACDD--LYMPKN 122

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKR 163
             +++H+PS    G + D+ R A+ +++ K+
Sbjct: 123 TFLMIHKPSAMAMGDSDDMLRVARCLIRCKK 153


>gi|295114931|emb|CBL35778.1| Protease subunit of ATP-dependent Clp proteases [butyrate-producing
           bacterium SM4/1]
          Length = 246

 Score = 48.1 bits (113), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 79/174 (45%), Gaps = 5/174 (2%)

Query: 42  ERIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           ER +F+ G I  E      +  QL   E       I+++INSPGG   A   IY+ +   
Sbjct: 19  ERTLFLNGTIAEESWFDDDVTPQLFKEELMAGSGNITVWINSPGGDCVAAAQIYNMLMDY 78

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
           K  ++    G AAS  S++  AG +      P   +++H P+    G  +++ +  + + 
Sbjct: 79  KGDVTVKIDGIAASAASVIAMAGTQ--VLISPVGMMMIHNPATIAWGDTAEMRKAIEMLA 136

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
            +K  +   Y    G +  ++   +D +  M A +A ++G  D +L  R D+ E
Sbjct: 137 SVKDSIINAYEIKTGLSRAKLSHLMDAETWMDAHKAVEFGFADGIL-GRTDLPE 189


>gi|295110105|emb|CBL24058.1| Protease subunit of ATP-dependent Clp proteases [Ruminococcus obeum
           A2-162]
          Length = 240

 Score = 48.1 bits (113), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/196 (21%), Positives = 91/196 (46%), Gaps = 26/196 (13%)

Query: 29  GERSYDIYSRLLKERIVFVTGQIEDHMAT----------LICAQLLFLEAENPQKEISLY 78
           G+ + D   R  +  ++ + G++E H +            +  +L  +E +     + + 
Sbjct: 26  GQLTLDQNKRKHRIELLTIIGEVEGHDSAPSQSKTTKYEHVLPKLALIEDDKDVDGLLIL 85

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           +N+ GG V AG+AI + +  +  P  +  +G   S+G  +  + +    FA+P+A +++H
Sbjct: 86  LNTVGGDVEAGLAIAEMIASLSIPTVSLVLGGGHSIGVPMAVSAD--YSFAVPSATMVIH 143

Query: 139 --QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDH 188
             + SG F G A    +  ++I KI+ R+      + G T E +E+ +        D   
Sbjct: 144 PVRSSGMFIGVA----QSYRNIEKIQDRITGFIAAHSGTTQERLEELMLDTSQLVKDVGT 199

Query: 189 IMSASEACDWGVVDKV 204
           ++   EA   G+++++
Sbjct: 200 MLEGREAVKEGLINEI 215


>gi|284801601|ref|YP_003413466.1| hypothetical protein LM5578_1354 [Listeria monocytogenes 08-5578]
 gi|284994743|ref|YP_003416511.1| hypothetical protein LM5923_1307 [Listeria monocytogenes 08-5923]
 gi|284057163|gb|ADB68104.1| hypothetical protein LM5578_1354 [Listeria monocytogenes 08-5578]
 gi|284060210|gb|ADB71149.1| hypothetical protein LM5923_1307 [Listeria monocytogenes 08-5923]
          Length = 238

 Score = 48.1 bits (113), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 2/134 (1%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I + INS GG V AG  IY T++     ++   +G AAS  S++  AG+K +  + P A+
Sbjct: 40  IDVIINSGGGDVYAGSEIYTTLKGYNGTVNVKVVGIAASAASVIAMAGDK-VEIS-PTAQ 97

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++H  + G  G   D+E  A+        +   Y+   GK  +E+   +      +A +
Sbjct: 98  IMVHNVASGVFGDYRDLEHEAKVSKGFNVSVANAYMDKTGKNMDELLNLMGETTWFNAQQ 157

Query: 195 ACDWGVVDKVLMSR 208
           A + G  D+V+ S 
Sbjct: 158 AVEAGFADEVMFSN 171


>gi|304436385|ref|ZP_07396361.1| ATP-dependent Clp protease proteolytic subunit [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
 gi|304370654|gb|EFM24303.1| ATP-dependent Clp protease proteolytic subunit [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
          Length = 229

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 78/167 (46%), Gaps = 4/167 (2%)

Query: 41  KERIVFVTGQIEDH--MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           ++R++ + G+I D       +  Q+   E    + +I L+INSPGG   A   IY+ +  
Sbjct: 14  EKRVLLLDGEISDETWWGDEVTPQMFRSELNAAEGDIDLWINSPGGDCYAAAQIYNMLME 73

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
               ++    G AAS  S++  AG   +  + P   ++LH P     G   ++ER    +
Sbjct: 74  YPGEVTVKIDGIAASAASVVAMAGST-VEIS-PLGLLMLHNPMTVSIGDTHEMERTITFL 131

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            +IK  +   Y    G +  ++ + +D +  M+A +A + G  D VL
Sbjct: 132 SEIKESIINAYELKTGLSRAKISRLMDAETWMNAKKAVELGFADSVL 178


>gi|17488507|ref|NP_510985.1| Clp protease [Listeria phage 2389]
 gi|254933557|ref|ZP_05266916.1| clp protease [Listeria monocytogenes HPB2262]
 gi|17402412|emb|CAC85560.1| Clp protease [Listeria phage PSA]
 gi|293585121|gb|EFF97153.1| clp protease [Listeria monocytogenes HPB2262]
          Length = 248

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 70/142 (49%), Gaps = 4/142 (2%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
           +I++++NS GG V   +AI++ ++     IS +    A S  S++  AG++     +P N
Sbjct: 57  QINVHVNSGGGDVFESIAIHNLLKAHPAKISIYIDALAGSGASVIAMAGDE---IIMPSN 113

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A +++H+     +G A +  + A D+ KI   + E Y +      EE+   L  +  ++A
Sbjct: 114 AMMMIHKAWTIAAGNADEFRKVANDMDKIDHAVTESYTERFVGEREELVTLLTNEEWLTA 173

Query: 193 SEACDWGVVDKVLMSRIDIEEK 214
            E    G  D +    ++ EE+
Sbjct: 174 EECVTLGFCDSIGEIELNEEEQ 195


>gi|302344005|ref|YP_003808534.1| peptidase S14 ClpP [Desulfarculus baarsii DSM 2075]
 gi|301640618|gb|ADK85940.1| peptidase S14 ClpP [Desulfarculus baarsii DSM 2075]
          Length = 245

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 4/135 (2%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAAS-MGSLLLSAGEKGMRFALPNA 133
           I L INSPGG V    A+   +Q     I     G AAS  G + L+A E  M      A
Sbjct: 73  IHLRINSPGGGVFEAEAMQTALQQHPARIIAHIDGLAASAAGFVALAADEIEM---ADGA 129

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
             ++H   G   G A+++  +A  + K+   L   Y +  G + E +   +  +  +SA+
Sbjct: 130 FFMIHNAWGVAVGDATEMLDYAAMLEKMDANLVRDYRRKTGHSAERIATWMQAETWLSAA 189

Query: 194 EACDWGVVDKVLMSR 208
           EA D G VD+V   +
Sbjct: 190 EALDLGFVDRVFTPK 204


>gi|327385116|gb|AEA56590.1| ClpP protease [Lactobacillus casei BD-II]
          Length = 235

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 2/132 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           ++S+ INS GG+V AG  IY  ++  K P++   +G A S  SL+  AG+  +    P  
Sbjct: 44  DLSVEINSGGGIVDAGSEIYTMLRAYKGPVNVNVVGVAYSAASLIAMAGD--VVAMSPAG 101

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H  S G  G   D++  A  + K    +   Y+   G +  E+   +D  + +   
Sbjct: 102 MMMIHNVSSGQMGDYHDMQNAADSLKKSNIAIANAYMAKTGLSQAEILDLMDSTYWLDPQ 161

Query: 194 EACDWGVVDKVL 205
            A + G  DK++
Sbjct: 162 TAIEKGFADKMM 173


>gi|254991945|ref|ZP_05274135.1| Clp protease domain protein [Listeria monocytogenes FSL J2-064]
          Length = 238

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 2/134 (1%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I + INS GG V AG  IY T++     ++   +G AAS  S++  AG+K +  + P A+
Sbjct: 40  IDVIINSGGGDVYAGSEIYTTLKGYNGTVNVKVVGIAASAASVIAMAGDK-VEIS-PTAQ 97

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++H  + G  G   D+E  A+        +   Y+   GK  +E+   +      +A +
Sbjct: 98  IMVHNVASGVFGDYRDLEHEAKVSKGFNVSVANAYMDKTGKNMDELLNLMGETTWFNAQQ 157

Query: 195 ACDWGVVDKVLMSR 208
           A + G  D+V+ S 
Sbjct: 158 AVEAGFADEVMFSN 171


>gi|323693294|ref|ZP_08107512.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           symbiosum WAL-14673]
 gi|323502777|gb|EGB18621.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           symbiosum WAL-14673]
          Length = 236

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 4/166 (2%)

Query: 42  ERIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           ER +F+ G I  E      +  +L   E      +I+++INSPGG   A   IY+ M   
Sbjct: 12  ERTLFLNGTIAEESWFDDDVTPKLFRDELFAGNGDITIWINSPGGDCVAAAQIYNMMIEY 71

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
              ++    G AAS  S++  AG K      P + +++H P     G  S++++    + 
Sbjct: 72  PGNVTVKIDGIAASAASVIAMAGTK--VLVSPVSMLMIHNPMTAAMGDTSEMQKAIAMLD 129

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           ++K  +   Y    G +  ++   +D +  M A  A D G  D++L
Sbjct: 130 EVKESIINAYEIKTGMSRAKLSHLMDAETWMDAHTAIDMGFADEIL 175


>gi|315611967|ref|ZP_07886885.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           sanguinis ATCC 49296]
 gi|315315956|gb|EFU63990.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           sanguinis ATCC 49296]
          Length = 239

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 69/136 (50%), Gaps = 2/136 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           +++ ++INS GG V AG  IY  ++     ++   +G AAS  S++  AG+  +  + P 
Sbjct: 39  EDVEIHINSGGGDVYAGSEIYTALRAYSGRVTVKIVGIAASAASVIAMAGDS-VEIS-PT 96

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A+I++H  S G  G  + +E  A  +    + +   YV   GK   ++ + +++     A
Sbjct: 97  AQIMIHNVSSGVYGDHNALEHEAAVLKGFNKSIASAYVHKTGKALNDLLELMNQTTWFDA 156

Query: 193 SEACDWGVVDKVLMSR 208
             A + G  DKV+ ++
Sbjct: 157 EAAVENGFADKVMFAQ 172


>gi|152985368|ref|YP_001348470.1| hypothetical protein PSPA7_3110 [Pseudomonas aeruginosa PA7]
 gi|150960526|gb|ABR82551.1| putative Clp protease [Pseudomonas aeruginosa PA7]
          Length = 184

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 11/148 (7%)

Query: 41  KERIVFVTGQIEDHM-ATLI--CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97
           K+ I+  TG I       LI  CA+ L  EAE    E+ + I + GG  + G  +Y+ ++
Sbjct: 3   KQHIIHFTGPINSSTCGNLINTCAKALQQEAE----ELRINIATMGGECSYGFTLYNFLR 58

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
            +  P+ T  +G   SMG++L  AGE+  R A  +++ L H       G A D  R A+ 
Sbjct: 59  ALPVPVHTHNLGTVESMGNILFLAGER--RSACAHSKFLFHPFHWTLHG-AVDHARMAEY 115

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
            + +   L ++Y +   +   +  + LD
Sbjct: 116 AMSLDYDL-QLYAQIVAEHTRDAPERLD 142


>gi|167040270|ref|YP_001663255.1| peptidase S14, ClpP [Thermoanaerobacter sp. X514]
 gi|256750804|ref|ZP_05491689.1| peptidase S14 ClpP [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914354|ref|ZP_07131670.1| peptidase S14 ClpP [Thermoanaerobacter sp. X561]
 gi|307724410|ref|YP_003904161.1| peptidase S14 ClpP [Thermoanaerobacter sp. X513]
 gi|166854510|gb|ABY92919.1| peptidase S14, ClpP [Thermoanaerobacter sp. X514]
 gi|256750387|gb|EEU63406.1| peptidase S14 ClpP [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889289|gb|EFK84435.1| peptidase S14 ClpP [Thermoanaerobacter sp. X561]
 gi|307581471|gb|ADN54870.1| peptidase S14 ClpP [Thermoanaerobacter sp. X513]
          Length = 238

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 79/177 (44%), Gaps = 24/177 (13%)

Query: 47  VTGQIEDHMATL----------ICAQLLFLEAENPQ-KEISLYINSPGGVVTAGMAIYDT 95
           + GQIE HM             I  QL+ +E ENP  K + + +N+ GG V AG+AI + 
Sbjct: 43  IIGQIEGHMILPPQNKTTKYEHIIPQLVAIE-ENPNIKGVLILLNTVGGDVEAGLAIAEM 101

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           +  +  P  +  +G   S+G  L  A      + +P+A + +H      +G    + +  
Sbjct: 102 IASLSKPTVSIVLGGGHSIGVPL--AVSANYSYIVPSATMTIHPIR--MTGLIVGVPQTF 157

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
               K++ R+ E  V+N     +   K +        D   I+   EA D+G++D++
Sbjct: 158 DYFNKMQDRIVEFIVRNSKIKRDTFMKLMLKTGELANDIGTILVGKEAVDYGLIDEI 214


>gi|227544633|ref|ZP_03974682.1| protease subunit of ATP-dependent Clp protease [Lactobacillus
           reuteri CF48-3A]
 gi|256847819|ref|ZP_05553264.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           coleohominis 101-4-CHN]
 gi|259502590|ref|ZP_05745492.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
 gi|300909450|ref|ZP_07126911.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           reuteri SD2112]
 gi|68160762|gb|AAY86827.1| lr0867 [Lactobacillus reuteri]
 gi|227185358|gb|EEI65429.1| protease subunit of ATP-dependent Clp protease [Lactobacillus
           reuteri CF48-3A]
 gi|256715508|gb|EEU30484.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           coleohominis 101-4-CHN]
 gi|259169405|gb|EEW53900.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
 gi|300893315|gb|EFK86674.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           reuteri SD2112]
          Length = 223

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 2/147 (1%)

Query: 59  ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLL 118
           +  Q+   E    Q  I L++NSPGG  TA   IY  +      ++    G AAS  S++
Sbjct: 32  VSPQVFQDELNESQDPIDLWLNSPGGDCTAASQIYTMLMNYPNEVNVKISGIAASAASVI 91

Query: 119 LSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYE 178
             AG   +  A P A +++H P     GQ  D++  AQ + + K  +   Y        E
Sbjct: 92  AMAGTT-VSMA-PAAMLMIHNPLTIVGGQERDLDHAAQMLAETKESIINAYELKTNLPRE 149

Query: 179 EVEKTLDRDHIMSASEACDWGVVDKVL 205
           ++   +D +  M+ ++A + G  D +L
Sbjct: 150 KISTMMDNETWMNVNKAIELGFADAML 176


>gi|194366275|ref|YP_002028885.1| peptidase S14 ClpP [Stenotrophomonas maltophilia R551-3]
 gi|194349079|gb|ACF52202.1| peptidase S14 ClpP [Stenotrophomonas maltophilia R551-3]
          Length = 280

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 66/133 (49%), Gaps = 2/133 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K++ + INSPGG    G+AIY+ ++  +  ++   MG AAS  S++  AG++ +      
Sbjct: 74  KDVVVNINSPGGDFFEGVAIYNLLREHQGRVTVQVMGLAASAASVIAMAGDEILMG--DG 131

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           + +++H       G   D+   A+ +      + ++Y    G T  E  + +D +  + A
Sbjct: 132 SFLMIHNAWAVAIGNRHDMADAAKLLEPFDTAMAKVYAARSGVTEAEAARMMDEETWIGA 191

Query: 193 SEACDWGVVDKVL 205
           ++A + G  D +L
Sbjct: 192 AQAVEDGFADGLL 204


>gi|293401151|ref|ZP_06645295.1| Clp protease [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305277|gb|EFE46522.1| Clp protease [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 241

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 78/166 (46%), Gaps = 4/166 (2%)

Query: 42  ERIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           ER +F+ G I  E      +  QL   E  +   +I+++INSPGG   A   IY+ +   
Sbjct: 13  ERTLFLNGTIAEESWFDDDVTPQLFKDELLSGSGDITVWINSPGGDCVAAAQIYNMLMDY 72

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
           K  ++    G AAS  S++  AG K      P + +++H P     G   ++E+    + 
Sbjct: 73  KGNVTVKIDGIAASAASVIAMAGTK--VLVSPVSMMMIHNPMTVAFGNTGEMEKAIAMLD 130

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           ++K  +   Y    G +  ++   +D +  M+A+ A + G  D+V+
Sbjct: 131 EVKESIINAYEIKTGLSRAKLSHLMDAETWMNANMAVELGFADEVM 176


>gi|167037609|ref|YP_001665187.1| peptidase S14, ClpP [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|307264928|ref|ZP_07546490.1| peptidase S14 ClpP [Thermoanaerobacter wiegelii Rt8.B1]
 gi|320116024|ref|YP_004186183.1| peptidase S14 ClpP [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|326389423|ref|ZP_08210990.1| peptidase S14 ClpP [Thermoanaerobacter ethanolicus JW 200]
 gi|166856443|gb|ABY94851.1| peptidase S14, ClpP [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|306920186|gb|EFN50398.1| peptidase S14 ClpP [Thermoanaerobacter wiegelii Rt8.B1]
 gi|319929115|gb|ADV79800.1| peptidase S14 ClpP [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|325994428|gb|EGD52853.1| peptidase S14 ClpP [Thermoanaerobacter ethanolicus JW 200]
          Length = 238

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 79/177 (44%), Gaps = 24/177 (13%)

Query: 47  VTGQIEDHMATL----------ICAQLLFLEAENPQ-KEISLYINSPGGVVTAGMAIYDT 95
           + GQIE HM             I  QL+ +E ENP  K + + +N+ GG V AG+AI + 
Sbjct: 43  IIGQIEGHMILPPQNKTTKYEHIIPQLVAIE-ENPNIKGVLILLNTVGGDVEAGLAIAEM 101

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           +  +  P  +  +G   S+G  L  A      + +P+A + +H      +G    + +  
Sbjct: 102 IASLSKPTVSIVLGGGHSIGVPL--AVSANYSYIVPSATMTIHPIR--MTGLIVGVPQTF 157

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
               K++ R+ E  V+N     +   K +        D   I+   EA D+G++D++
Sbjct: 158 DYFNKMQDRIVEFIVRNSKIKRDTFMKLMLKTGELANDIGTILVGKEAVDYGLIDEI 214


>gi|306828094|ref|ZP_07461357.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes ATCC 10782]
 gi|304429631|gb|EFM32677.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes ATCC 10782]
          Length = 238

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 77/149 (51%), Gaps = 9/149 (6%)

Query: 63  LLFLEAENPQKEIS-----LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSL 117
           + F E      EIS     ++INS GG +  G+AI + ++ +   +     G AAS  S+
Sbjct: 38  ITFKEVRQAMSEISSDTVEVHINSYGGDMFEGIAIKNYLKQLDKTVIVVIDGIAASAASV 97

Query: 118 LLSAGEKGMRFALP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
           +  AG+      +P + +I++H P    +G A ++ + A D+ K +  + E Y+ +   T
Sbjct: 98  IAMAGD---TIKMPKDTQIMIHNPWTWAAGNAKELRKIADDLEKSQTSIEESYLAHFKGT 154

Query: 177 YEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            +E++  LD +  ++A EA   G+ D+++
Sbjct: 155 RDELKALLDEETSLTAEEAVMLGLADELI 183


>gi|313896528|ref|ZP_07830079.1| endopeptidase Clp [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312974952|gb|EFR40416.1| endopeptidase Clp [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 229

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 76/167 (45%), Gaps = 4/167 (2%)

Query: 41  KERIVFVTGQIEDH--MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           ++RI+ + G+I D       I  Q+   E    + +I L+INSPGG   A   IY+ +  
Sbjct: 14  EKRILLLDGEISDETWWGDEITPQMFRSELNAAEGDIDLWINSPGGDCYAAAQIYNMLME 73

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
            K  ++    G  A+  +  ++     +  + P   +++H P     G   ++ER    +
Sbjct: 74  YKGNVAVKIDG-IAASAASAVAMAGSNVEIS-PLGMLMIHNPMTVSIGDTHEMERTITFL 131

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            +IK  +   Y    G +  ++ + +D +  M+A +A + G  D VL
Sbjct: 132 SEIKESIINAYELKTGLSRAKISRLMDAETWMNAKKAVELGFADSVL 178


>gi|229824181|ref|ZP_04450250.1| hypothetical protein GCWU000282_01485 [Catonella morbi ATCC 51271]
 gi|229786535|gb|EEP22649.1| hypothetical protein GCWU000282_01485 [Catonella morbi ATCC 51271]
          Length = 250

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 71/154 (46%), Gaps = 18/154 (11%)

Query: 59  ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMG------QAA 112
           + A+L+    E   K I + +NSPGG V  G+ IY+ ++     ++    G         
Sbjct: 39  VSAKLVRDSLEGVDKPILIKLNSPGGDVFEGIEIYNYLKNHNQSVTVEITGVAASAASII 98

Query: 113 SMGS--LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYV 170
           +MG+  ++++ G            +++H+ S    G  +DI++    +  I   L  IY 
Sbjct: 99  AMGADKIIMNTG----------TTLMIHEASSFAFGNKTDIQKVLNALETIDASLVAIYA 148

Query: 171 KNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           +  G   +E++  L+ +  ++A EA D G  D+V
Sbjct: 149 ERTGIDTDEIKDLLNAETWLTAEEAVDKGFADEV 182


>gi|124002916|ref|ZP_01687767.1| Clp protease domain protein [Microscilla marina ATCC 23134]
 gi|123991566|gb|EAY30974.1| Clp protease domain protein [Microscilla marina ATCC 23134]
          Length = 425

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 72/142 (50%), Gaps = 14/142 (9%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPP-----ISTFCMGQAASMGSLLLSAGEK-GM 126
           + +++ INSPGG +T G++I   +  I        I T+  G A S+  L+   G+K GM
Sbjct: 51  RRLNVRINSPGGKITDGLSICAAILNINQSTPNVRIDTYVDGLALSIAGLIAVCGKKVGM 110

Query: 127 -RFALPNARILLHQPSGGFSGQASDIERHAQD--IVKIKRRLNEIYVKNCGKTYEEVEKT 183
             F    A+++LH P  G S  ++D     Q   ++++K  L  +     G+  E++   
Sbjct: 111 CNF----AKLMLHNPFIG-SKNSTDPNEAGQHETLMQVKEMLLTLLATRTGQKVEDLSFM 165

Query: 184 LDRDHIMSASEACDWGVVDKVL 205
           +++   +SA+EA   G VD+V 
Sbjct: 166 MNQTTWLSAAEAKRQGFVDEVF 187


>gi|291550140|emb|CBL26402.1| Protease subunit of ATP-dependent Clp proteases [Ruminococcus
           torques L2-14]
          Length = 252

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 65/140 (46%), Gaps = 2/140 (1%)

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
            L+A     EI +Y NS GG V  G AIY+ +Q      +   MG   S+   +L A +K
Sbjct: 51  LLDAIPETDEIKIYFNSNGGSVDQGTAIYNMLQQHGSYKTGIVMGGCHSIAFTILQACDK 110

Query: 125 GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
             R        ++H      +G A+D+   A ++         ++++    + EE+ + +
Sbjct: 111 --RIMGQGTTAIIHDMWETVTGNAADLRAEADNLDVAMDSCVALFMQRATVSEEELREMM 168

Query: 185 DRDHIMSASEACDWGVVDKV 204
            +   +S  +A ++G++D++
Sbjct: 169 HKTTTLSPQKALEYGLIDEI 188


>gi|289423867|ref|ZP_06425660.1| serine protease [Peptostreptococcus anaerobius 653-L]
 gi|289155644|gb|EFD04316.1| serine protease [Peptostreptococcus anaerobius 653-L]
          Length = 248

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 66/140 (47%), Gaps = 6/140 (4%)

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           +E   K +++YINS GG + AG+AI + ++           G A S  S++    +    
Sbjct: 45  SEANNKTVNVYINSGGGDLFAGIAIANMLKRHNASTKAIIDGLAGSAASIIAFGCD---T 101

Query: 128 FALP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC--GKTYEEVEKTL 184
             +P NA +++H+PS   SG A D ++ A  +  ++  +   Y+     G   E +   +
Sbjct: 102 IEMPENAYLMIHKPSSWCSGNADDFKKMADTLDTLQEGIVNTYMAKVVEGVDSETINSMI 161

Query: 185 DRDHIMSASEACDWGVVDKV 204
           + +  ++   A D+  VD V
Sbjct: 162 NNETWLTGKSAKDYFKVDIV 181


>gi|83718056|ref|YP_439243.1| ClpP protease [Burkholderia thailandensis E264]
 gi|83651881|gb|ABC35945.1| ClpP protease [Burkholderia thailandensis E264]
          Length = 280

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 61/127 (48%), Gaps = 2/127 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           +++++ +NSPGG    G+AIY+ ++  K  ++   MG AAS  S++  AG++ +      
Sbjct: 75  RDVAVNVNSPGGDFFEGVAIYNLLREHKAKVTINVMGLAASAASVIAMAGDEILMG--DG 132

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A +++H       G   D+   A  +      + ++Y +  G         +DR+  + A
Sbjct: 133 AFLMIHNAWAVAIGNRHDMTAAAATLAPFDAAMAKLYAQRAGIPEATAAAMMDRETWIGA 192

Query: 193 SEACDWG 199
            +A D G
Sbjct: 193 DQAVDDG 199


>gi|164688506|ref|ZP_02212534.1| hypothetical protein CLOBAR_02151 [Clostridium bartlettii DSM
           16795]
 gi|164602919|gb|EDQ96384.1| hypothetical protein CLOBAR_02151 [Clostridium bartlettii DSM
           16795]
          Length = 321

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 75/151 (49%), Gaps = 13/151 (8%)

Query: 63  LLFLEAENPQ-KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSA 121
           +L+   E+P+ K I + +N+ GG V AG+A+ + +  I   + T  +G + S+G  L +A
Sbjct: 152 MLYSIEEDPEIKGILIILNTVGGDVEAGLAMAELINSISKKVVTLVLGGSHSIGVPLATA 211

Query: 122 GEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVE 181
           G+    F  P+A +++H      +G    +    +   K++ R+NE   +    + EE+ 
Sbjct: 212 GD--YSFIAPSATMIVHPIR--TNGLVIGVNETFEYFKKMQERINEFITRTSNISEEELT 267

Query: 182 KTL--------DRDHIMSASEACDWGVVDKV 204
           + +        D   ++   EA D G++++V
Sbjct: 268 RLMHAKDELVSDVGSVLIGKEAVDCGLINEV 298


>gi|116618740|ref|YP_819111.1| protease subunit of ATP-dependent Clp protease [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|116097587|gb|ABJ62738.1| Protease subunit of ATP-dependent Clp protease [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 229

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 68/132 (51%), Gaps = 2/132 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           ++ + INS GG V A   IY  ++     + T     A S  S++  AG+  ++ + P A
Sbjct: 42  DLEIGINSGGGEVDAANEIYTALRNYPGKVITQIESSAYSAASIIAMAGDT-VQIS-PVA 99

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           ++++H  S    G  +D+++ +  +    + + + Y    G+  +E    +D++  ++A 
Sbjct: 100 QLMIHNASTYAGGNHNDLDKTSNALKSTDKAIAKAYSVKTGRPVDEFLALMDKETWINAD 159

Query: 194 EACDWGVVDKVL 205
           +A + G+VD+V+
Sbjct: 160 DALELGLVDEVM 171


>gi|254479114|ref|ZP_05092466.1| Clp protease [Carboxydibrachium pacificum DSM 12653]
 gi|214034963|gb|EEB75685.1| Clp protease [Carboxydibrachium pacificum DSM 12653]
          Length = 238

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 24/177 (13%)

Query: 47  VTGQIEDHMATL----------ICAQLLFLEAENPQ-KEISLYINSPGGVVTAGMAIYDT 95
           + GQIE HM             I  QL+ +E ENP  K + + +N+ GG V AG+AI + 
Sbjct: 44  IIGQIEGHMILPPQNKTTKYEHIIPQLVAIE-ENPSIKGVLVLLNTVGGDVEAGLAIAEM 102

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           +  +  P  +  +G   S+G  L  A      + +P+A + +H      +G    + +  
Sbjct: 103 IASLSKPTVSIVLGGGHSIGVPL--AVSANYSYIVPSATMTIHPIR--MTGLVVGVPQTF 158

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEV--------EKTLDRDHIMSASEACDWGVVDKV 204
               K++ R+ E  V+N     E          E   D   I+   EA D+G++D++
Sbjct: 159 DYFNKMQDRIVEFIVRNSKIKRETFMSLMLKTGELANDIGTILVGKEAVDYGLIDEI 215


>gi|207724090|ref|YP_002254488.1| clpp-related protease protein [Ralstonia solanacearum MolK2]
 gi|206589299|emb|CAQ36261.1| putative clpp-related protease protein [Ralstonia solanacearum
           MolK2]
          Length = 255

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 2/129 (1%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I L +NSPGG V A  A+   ++     I     G AAS  S L+ A ++ +  A   A 
Sbjct: 64  IRLRVNSPGGDVFAARAMEAALRGHSAKIIVHVDGLAASAASFLIMAADE-IEIA-DGAF 121

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++H+      G A D+   A+ + KI   L   Y +  G++ +++   +  +  + A +
Sbjct: 122 IMIHKAWTALWGNADDLRAEAELLDKIDSTLVNTYAQRTGQSADDIATWMAAETWLGADD 181

Query: 195 ACDWGVVDK 203
           A + G  D+
Sbjct: 182 AVERGFADR 190


>gi|239631906|ref|ZP_04674937.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|239526371|gb|EEQ65372.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           paracasei subsp. paracasei 8700:2]
          Length = 241

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 69/133 (51%), Gaps = 2/133 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           +++ L INSPGG V AG  +   ++     I T  +G AAS  S++  AG+K +  A P 
Sbjct: 46  QDVVLEINSPGGDVFAGSEMATAIKNYSGSIITNIVGLAASAASVVALAGDK-VEMA-PT 103

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A++++H+ S   +G    +    Q +  I + L ++YV   G +  +V   +  +  ++A
Sbjct: 104 AQLMIHRASTSANGNVDVLNSAGQSLDSIDQSLVDVYVAKTGMSPSDVYNMMVNETWINA 163

Query: 193 SEACDWGVVDKVL 205
            EA + G  D ++
Sbjct: 164 KEAVEKGFADDIM 176


>gi|300214157|gb|ADJ78573.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           salivarius CECT 5713]
          Length = 239

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 2/132 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I + I S GG V     IY  ++  K  +     G AAS  S++  AG+  +  A P A
Sbjct: 45  DIVVDIASNGGDVFVASEIYSMLKNNKSNVKVNVTGLAASAASVIAMAGDT-VSIA-PTA 102

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           +I++H+      G A D+   A  +  I + +   Y    G    ++ + +  +  ++A 
Sbjct: 103 QIMIHKAWTNMDGNADDLNHEAGVLNNIDKSIASAYELKTGMKQSDLLQMMSNETWLTAQ 162

Query: 194 EACDWGVVDKVL 205
           +A D G  D+++
Sbjct: 163 DAVDKGFADEIM 174


>gi|50914353|ref|YP_060325.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes MGAS10394]
 gi|50903427|gb|AAT87142.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes MGAS10394]
          Length = 221

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 70/133 (52%), Gaps = 3/133 (2%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I L +NS GG+VT G  IY  ++  K  ++    G AAS  S+ +   +K +    P A
Sbjct: 43  DIILEVNSNGGLVTVGSEIYTALRNYKGKVTAEITGMAASAASVAVMGVDKVVMS--PTA 100

Query: 134 RILLHQPSGGF-SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           ++++H+ S  + +G + D+++ +  +    + +   YV   G   +E+ + +  +  MSA
Sbjct: 101 QMMVHKASFNWVAGNSDDLDKASNALKSSDKAIVNAYVAKTGLPEDEIMELMKNETFMSA 160

Query: 193 SEACDWGVVDKVL 205
            +A + G  D+V+
Sbjct: 161 QDAVEKGFADEVM 173


>gi|20807828|ref|NP_622999.1| protease subunit of ATP-dependent Clp protease [Thermoanaerobacter
           tengcongensis MB4]
 gi|20516388|gb|AAM24603.1| Protease subunit of ATP-dependent Clp proteases [Thermoanaerobacter
           tengcongensis MB4]
          Length = 239

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 26/178 (14%)

Query: 47  VTGQIEDHMATL----------ICAQLLFLEAENPQ-KEISLYINSPGGVVTAGMAIYDT 95
           + GQIE HM             I  QL+ +E ENP  K + + +N+ GG V AG+AI + 
Sbjct: 45  IIGQIEGHMILPPQNKTTKYEHIIPQLVAIE-ENPSIKGVLVLLNTVGGDVEAGLAIAEM 103

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           +  +  P  +  +G   S+G  L  A      + +P+A + +H      +G    + +  
Sbjct: 104 IASLSKPTVSIVLGGGHSIGVPL--AVSANYSYIVPSATMTIHPIR--MTGLVVGVPQTF 159

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTL---------DRDHIMSASEACDWGVVDKV 204
               K++ R+ E  V+N  K   E   +L         D   I+   EA D+G++D++
Sbjct: 160 DYFNKMQDRIVEFIVRNS-KIKRETFMSLMLKTGELANDIGTILVGKEAVDYGLIDEI 216


>gi|270291371|ref|ZP_06197593.1| ATP-dependent Clp protease, protease subunit [Pediococcus
           acidilactici 7_4]
 gi|270280217|gb|EFA26053.1| ATP-dependent Clp protease, protease subunit [Pediococcus
           acidilactici 7_4]
          Length = 243

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 63/130 (48%), Gaps = 2/130 (1%)

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           I S GG V A   IY  ++     ++    G AAS  S++  AG+  +  + P A+I++H
Sbjct: 49  IASNGGDVFAASEIYTMLKNYAGNVTVNIQGLAASAASVIAMAGDH-INIS-PTAQIMIH 106

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           +     +G A D+E  A  +  I + +   Y    G    ++ + +  +  ++AS+A D 
Sbjct: 107 KAWSQPAGNADDLEHEASILNGIDQSIASAYEAKTGMDQADLLQLMANETWLTASDAVDK 166

Query: 199 GVVDKVLMSR 208
           G  D+++ + 
Sbjct: 167 GFADEIMFAN 176


>gi|296102050|ref|YP_003612196.1| hypothetical protein ECL_01689 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295056509|gb|ADF61247.1| hypothetical protein ECL_01689 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 172

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 4/100 (4%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AIY+ ++     I+    G AASM S++   G   
Sbjct: 31  LRALGDITHINLHINSPGGDVFDGIAIYNALKHHGAAITVHIDGLAASMASVIAMVGNPV 90

Query: 126 MRFALP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRR 164
           +   +P N  +++H PS    G   + +     ++ +K++
Sbjct: 91  I---MPENTMMMIHYPSHYLMGTHEEPDSFINSLLTMKKK 127


>gi|46579912|ref|YP_010720.1| ClpP protease family protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46449328|gb|AAS95979.1| ClpP protease family protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311234088|gb|ADP86942.1| peptidase S14 ClpP [Desulfovibrio vulgaris RCH1]
          Length = 244

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 2/130 (1%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I L INSPGG V A   +   ++     +     G AAS  S +  A +  +    P A 
Sbjct: 63  IHLRINSPGGEVFAARCMEAAIKGHPAKVIAHVDGYAASAASFVAIACDDVLM--APGAF 120

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           +++H+     +G + D+ + A  + K+   L E Y + CGK+  ++ + +  +   +A E
Sbjct: 121 MMIHKAWVFTAGNSDDLIQTASLLEKLDGTLAETYSQKCGKSVSDMAEMMAAETWFTAQE 180

Query: 195 ACDWGVVDKV 204
           A + G+ D +
Sbjct: 181 AVEAGLADSI 190


>gi|124004284|ref|ZP_01689130.1| Clp protease domain protein [Microscilla marina ATCC 23134]
 gi|123990354|gb|EAY29853.1| Clp protease domain protein [Microscilla marina ATCC 23134]
          Length = 425

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 72/142 (50%), Gaps = 14/142 (9%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPP-----ISTFCMGQAASMGSLLLSAGEK-GM 126
           + +++ INSPGG +T G+++   +  I        I T+  G A S+  L+   G+K GM
Sbjct: 51  RRLNVRINSPGGKITDGLSVCAAILNINQTTPNVRIDTYVDGLALSIAGLIAVCGKKVGM 110

Query: 127 -RFALPNARILLHQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
             F    A+++LH P   G  S   ++  +H + ++++K  L  +     G+  E +   
Sbjct: 111 CNF----AKLMLHNPFIGGKNSTDPNEAGQH-ETLMQVKEMLLTLLATRTGQKIETLSAM 165

Query: 184 LDRDHIMSASEACDWGVVDKVL 205
           +++   +SA+EA   G VD+V 
Sbjct: 166 MNQTTWLSAAEAKRQGFVDEVF 187


>gi|308756016|gb|ADO51062.1| ATP-dependent Clp protease subunit [Lactobacillus acidophilus]
          Length = 223

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 2/147 (1%)

Query: 59  ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLL 118
           I  Q+   E    Q  I L++NSPGG  TA   IY  +      ++    G AAS  S++
Sbjct: 32  ISPQVFQDELNEDQGPIDLWLNSPGGDCTAASRIYTMLMNYPNDVNVKVDGIAASAASVI 91

Query: 119 LSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYE 178
             AG   +  A P A +++H P     GQ  D+++ AQ + + K  +   Y         
Sbjct: 92  AMAGTT-VSMA-PTAMLMIHNPLTIVGGQKKDLDQAAQMLTETKESIVNAYELKTNLPRA 149

Query: 179 EVEKTLDRDHIMSASEACDWGVVDKVL 205
           ++   +D +  M+ ++A + G  D++L
Sbjct: 150 KISTMMDNETWMNVNKAIELGFADEML 176


>gi|217964655|ref|YP_002350333.1| Clp protease domain protein [Listeria monocytogenes HCC23]
 gi|217333925|gb|ACK39719.1| Clp protease domain protein [Listeria monocytogenes HCC23]
 gi|307570780|emb|CAR83959.1| clpP protease family protein [Listeria monocytogenes L99]
          Length = 238

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 2/134 (1%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           + + INS GG V AG  IY T++     ++   +G AAS  S++  AG+K +  + P A+
Sbjct: 40  VDVIINSGGGDVYAGSEIYTTLKGYNGTVNVQVVGIAASAASVIAMAGDK-VEIS-PTAQ 97

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++H  + G  G   D+E  A+        +   Y+   GK  +E+   +      +A +
Sbjct: 98  IMVHNVASGVFGDYRDLEHEAKVSKGFNVSVANAYMDKTGKNMDELLNLMGETTWFNAQQ 157

Query: 195 ACDWGVVDKVLMSR 208
           A + G  D+V+ S 
Sbjct: 158 AVEAGFADEVMFSN 171


>gi|77864703|ref|YP_355413.1| gp77 [Burkholderia phage Bcep176]
 gi|161520414|ref|YP_001583841.1| peptidase S14 ClpP [Burkholderia multivorans ATCC 17616]
 gi|189353395|ref|YP_001949022.1| bacteriophage ATP-dependent Clp protease [Burkholderia multivorans
           ATCC 17616]
 gi|76885889|gb|ABA60079.1| gp77 [Burkholderia phage Bcep176]
 gi|160344464|gb|ABX17549.1| peptidase S14 ClpP [Burkholderia multivorans ATCC 17616]
 gi|189337417|dbj|BAG46486.1| bacteriophage ATP-dependent Clp protease [Burkholderia multivorans
           ATCC 17616]
          Length = 280

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 61/124 (49%), Gaps = 2/124 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           +E+++ +NSPGG    G+AIY+ ++  K  ++   MG AAS  S++  AG++ +      
Sbjct: 75  REVTVNVNSPGGDFFEGVAIYNLLREHKAKVTVNVMGLAASAASVIAMAGDEILMG--DG 132

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A +++H       G   D+   A  +      + ++Y +  G + E     +D++  + A
Sbjct: 133 AFLMIHNAWAVAIGNRHDMAAAAATLAPFDAAMAKLYAQRAGISEETAAAMMDKETWIGA 192

Query: 193 SEAC 196
            +A 
Sbjct: 193 DQAV 196


>gi|224501839|ref|ZP_03670146.1| Clp protease domain protein [Listeria monocytogenes FSL R2-561]
          Length = 238

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 2/134 (1%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           + + INS GG V AG  IY T++     ++   +G AAS  S++  AG+K +  + P A+
Sbjct: 40  VDVIINSGGGDVYAGSEIYTTLKGYNGTVNVQVVGIAASAASVIAMAGDK-VEIS-PTAQ 97

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++H  + G  G   D+E  A+        +   Y+   GK  +E+   +      +A +
Sbjct: 98  IMVHNVASGVFGDYRDLEHEAKVSKGFNVSVANAYMDKTGKNMDELLNLMGETTWFNAQQ 157

Query: 195 ACDWGVVDKVLMSR 208
           A + G  D+V+ S 
Sbjct: 158 AVEAGFADEVMFSN 171


>gi|322832526|ref|YP_004212553.1| peptidase S14 ClpP [Rahnella sp. Y9602]
 gi|321167727|gb|ADW73426.1| peptidase S14 ClpP [Rahnella sp. Y9602]
          Length = 282

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 71/133 (53%), Gaps = 2/133 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           +++++ INSPGG +  G+AIY+ ++     ++   +G AAS  S++  AG++ ++     
Sbjct: 74  EDVTVSINSPGGDMFEGLAIYNQLREYSGKVTVKVLGIAASAASIIAMAGDE-VQIGR-G 131

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A +++H       G   D+ R AQD+    R + +IY    G    +V + +D +  +  
Sbjct: 132 AFLMIHNCWVYAVGNRHDLARAAQDMEPFDRAMQDIYSARSGLDASDVSEMMDNETYIGG 191

Query: 193 SEACDWGVVDKVL 205
           ++A + G  D++L
Sbjct: 192 NDAVEKGFADRLL 204


>gi|115351925|ref|YP_773764.1| peptidase S14, ClpP [Burkholderia ambifaria AMMD]
 gi|115281913|gb|ABI87430.1| peptidase S14, ClpP [Burkholderia ambifaria AMMD]
          Length = 361

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 4/131 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I + INS GG V    AIY+ ++     +     G AAS  SL+  AG++     +P NA
Sbjct: 52  IVVAINSMGGDVFDAFAIYNALRRHAGKVKVRVDGVAASAASLIAMAGDE---IVMPENA 108

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H      +G+A D+ R A  +      +   Y    G++ +E+   +D +  ++A+
Sbjct: 109 LLMIHNAHTVTAGEAKDLRRIADLLDNAGDGILAAYAAKSGQSIDEIRGMMDAETWLTAA 168

Query: 194 EACDWGVVDKV 204
           +A + G  D +
Sbjct: 169 QAKEKGFCDTI 179


>gi|331699529|ref|YP_004335768.1| peptidase S14 ClpP [Pseudonocardia dioxanivorans CB1190]
 gi|326954218|gb|AEA27915.1| peptidase S14 ClpP [Pseudonocardia dioxanivorans CB1190]
          Length = 433

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 8/137 (5%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK---GMRFAL 130
           +I L++NSPGG    G+AI + ++  +  +     G AAS  S++  AG++   G+    
Sbjct: 77  QIVLHLNSPGGDAFEGVAIANVLRAHRARVVVRVDGMAASAASVIAMAGDEVVMGI---- 132

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
             +++++H  SG   G A++IE   + +      L   Y    G T  E    +  +   
Sbjct: 133 -GSQMMVHDASGYTWGNAAEIEAFLRRLNATSDSLAGTYAARAGGTVAEWRAVMQAETWY 191

Query: 191 SASEACDWGVVDKVLMS 207
           +  EA   G+ D+V  +
Sbjct: 192 TPEEAVAAGLADRVATA 208


>gi|191637762|ref|YP_001986928.1| Clp protease domain protein [Lactobacillus casei BL23]
 gi|190712064|emb|CAQ66070.1| Clp protease domain protein [Lactobacillus casei BL23]
 gi|327381829|gb|AEA53305.1| ClpP protease [Lactobacillus casei LC2W]
 gi|327384991|gb|AEA56465.1| ClpP protease [Lactobacillus casei BD-II]
          Length = 235

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 2/132 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           ++S+ INS GG++ AG  IY  ++  K P++   +G A S  SL+  AG+  +    P  
Sbjct: 44  DLSVEINSGGGILDAGSEIYTMLRAYKGPVNVNVVGVAYSAASLIAMAGD--VVAVSPAG 101

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H  S G  G   D++  A  + K    +   Y+   G +  E+   +D  + +   
Sbjct: 102 MMMIHNVSSGQMGDYHDMQNAADSLKKSNIAIANAYMAKTGLSQTEILDLMDSTYWLDPQ 161

Query: 194 EACDWGVVDKVL 205
            A + G  DK++
Sbjct: 162 TAIEKGFADKMM 173


>gi|238782645|ref|ZP_04626676.1| Peptidase S14, ClpP [Yersinia bercovieri ATCC 43970]
 gi|238716572|gb|EEQ08553.1| Peptidase S14, ClpP [Yersinia bercovieri ATCC 43970]
          Length = 224

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 3/100 (3%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQ-KEISLYINSPGGVVTAGMAIYDTMQFIKPPI 103
           ++  G + +   T + + +  + A  P  K + LYINS GG + +G   Y+ ++  + PI
Sbjct: 38  IYYIGDVTEKSVTELISSIDEINANYPTLKHLYLYINSNGGDMDSGYMAYEAVRSSRAPI 97

Query: 104 STFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           +T      AS  ++   A ++  R A+P +  LLH  S  
Sbjct: 98  TTINSAMVASAATMFYCAAKE--RLAMPLSSFLLHPASAS 135


>gi|116492765|ref|YP_804500.1| protease subunit of ATP-dependent Clp protease [Pediococcus
           pentosaceus ATCC 25745]
 gi|116102915|gb|ABJ68058.1| Protease subunit of ATP-dependent Clp protease [Pediococcus
           pentosaceus ATCC 25745]
          Length = 251

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 63/130 (48%), Gaps = 2/130 (1%)

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           I S GG V A   IY  ++     ++    G AAS  S++  AG+  +  + P A+I++H
Sbjct: 57  IASNGGDVFAASEIYTMLKNYAGNVTVNIQGLAASAASVIAMAGDH-INIS-PTAQIMIH 114

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           +     +G A D+E  A  +  I + +   Y    G    ++ + +  +  ++AS+A D 
Sbjct: 115 KAWSQPAGNADDLEHEASVLNGIDQSIASAYEAKTGMDQADLLQLMANETWLTASDAVDK 174

Query: 199 GVVDKVLMSR 208
           G  D+++ + 
Sbjct: 175 GFADEIMFAN 184


>gi|166031789|ref|ZP_02234618.1| hypothetical protein DORFOR_01490 [Dorea formicigenerans ATCC
           27755]
 gi|166028242|gb|EDR46999.1| hypothetical protein DORFOR_01490 [Dorea formicigenerans ATCC
           27755]
          Length = 228

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 90/201 (44%), Gaps = 26/201 (12%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMAT------LICAQLLFLEAENPQKE--- 74
           E    G    D  +R    R++ + G+IE H A            LL + AE    E   
Sbjct: 17  EMKETGSMKLDSNNRKHNVRLLTIIGEIEGHEAVSGNTKATKYEHLLPMLAEVEDSEEID 76

Query: 75  -ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
            + + +N+ GG V AG++I + +  I  P  +  +G + S+G  L  A +    F +P+ 
Sbjct: 77  GLLILLNTMGGDVEAGLSIAEMIASISKPTVSLVLGGSHSIGGPLAVAAD--YSFIVPSG 134

Query: 134 RILLH--QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL------- 184
            +++H  + +G F G    +++  Q++++ ++R+      +     E +E+ +       
Sbjct: 135 TMIIHPVRSNGMFIG----VQQSLQNMIRTQKRITGFLAAHSHMNEERIEELMLNPTELV 190

Query: 185 -DRDHIMSASEACDWGVVDKV 204
            D   ++   +A   G++D+V
Sbjct: 191 KDVGTLLEGEDAVREGLIDEV 211


>gi|257142364|ref|ZP_05590626.1| ClpP protease [Burkholderia thailandensis E264]
          Length = 243

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 61/127 (48%), Gaps = 2/127 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           +++++ +NSPGG    G+AIY+ ++  K  ++   MG AAS  S++  AG++ +      
Sbjct: 38  RDVAVNVNSPGGDFFEGVAIYNLLREHKAKVTINVMGLAASAASVIAMAGDEILMG--DG 95

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A +++H       G   D+   A  +      + ++Y +  G         +DR+  + A
Sbjct: 96  AFLMIHNAWAVAIGNRHDMTAAAATLAPFDAAMAKLYAQRAGIPEATAAAMMDRETWIGA 155

Query: 193 SEACDWG 199
            +A D G
Sbjct: 156 DQAVDDG 162


>gi|255557516|ref|XP_002519788.1| conserved hypothetical protein [Ricinus communis]
 gi|223541027|gb|EEF42584.1| conserved hypothetical protein [Ricinus communis]
          Length = 82

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)

Query: 128 FALPNARILLHQPSGGF-SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           F     R+++HQP  GF   Q  +     ++++K+   L  IY +  GK    V + +++
Sbjct: 2   FLFDKKRVMIHQPIAGFYEAQIGEFVLEVEELMKLCEILTRIYAQRMGKPLWVVSEDMEK 61

Query: 187 DHIMSASEACDWGVVDKV 204
           D  MSA EA   G+VD V
Sbjct: 62  DVFMSAVEAQAHGIVDLV 79


>gi|146308985|ref|YP_001189450.1| peptidase S14, ClpP [Pseudomonas mendocina ymp]
 gi|145577186|gb|ABP86718.1| peptidase S14, ClpP [Pseudomonas mendocina ymp]
          Length = 216

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 12/141 (8%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK-----GMR 127
           ++++L INSPGG V  G A+   +   K  ++ +  G AAS  + +  A ++     G  
Sbjct: 37  RDVALRINSPGGDVFDGRAMATAISQHKGKVTAYIDGLAASAATYVALAADEVEIAGGAF 96

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           F + NA  L         G A D    A  + K+   +   Y++   +  E+V   +  +
Sbjct: 97  FMIHNAWTL-------NMGNADDFRETASLLDKVDDSIVADYIRKTSQADEQVRAWMKAE 149

Query: 188 HIMSASEACDWGVVDKVLMSR 208
              SA EA + G VD++  S+
Sbjct: 150 TWFSAEEAVEHGFVDRLSQSK 170


>gi|29566898|ref|NP_818463.1| gp163 [Mycobacterium phage Omega]
 gi|29425623|gb|AAN12805.1| gp163 [Mycobacterium phage Omega]
          Length = 236

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 73/147 (49%), Gaps = 15/147 (10%)

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP--------ISTFCMGQAASMGSLLLS 120
           ++P+ + +L ++SPGG   +G    D  Q I+          I+    G AASMG ++L 
Sbjct: 93  QDPESKWNLIVDSPGGYCNSGFHAID--QLIEYSAWGGGSHYITMTVRGMAASMGGIILQ 150

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTY--E 178
           A ++  R    NA+IL+H  S G  G   ++  +   I  +  +  +++    GK    +
Sbjct: 151 AADE--RVMGRNAQILIHPISSGLYGGRGELHDYMGRIEMLTAQAEKLFKHRAGKKLPRK 208

Query: 179 EVEKTL-DRDHIMSASEACDWGVVDKV 204
           +++  L  ++  + A EA ++ +VD++
Sbjct: 209 KLKNALMYKNWWIGAEEALEYALVDRI 235


>gi|124009870|ref|ZP_01694537.1| Clp protease domain protein [Microscilla marina ATCC 23134]
 gi|123984106|gb|EAY24472.1| Clp protease domain protein [Microscilla marina ATCC 23134]
          Length = 425

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 72/142 (50%), Gaps = 14/142 (9%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPP-----ISTFCMGQAASMGSLLLSAGEK-GM 126
           + +++ INSPGG +T G++I   +  I        I T+  G A S+  L+   G+K GM
Sbjct: 51  RRLNVRINSPGGKITDGLSICAAILNINQSTPGVRIDTYVDGLALSIAGLIAVCGKKVGM 110

Query: 127 -RFALPNARILLHQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
             F    A+++LH P   G  S   ++  +H + ++++K  L  +     G+  + +   
Sbjct: 111 CNF----AKLMLHNPFIGGKNSTNPNEAGQH-ETLMQVKEMLLTLLATRTGQKVDTLSAM 165

Query: 184 LDRDHIMSASEACDWGVVDKVL 205
           +++   +SA+EA   G VD+V 
Sbjct: 166 MNQTTWLSAAEAKRQGFVDEVF 187


>gi|160892565|ref|ZP_02073355.1| hypothetical protein CLOL250_00094 [Clostridium sp. L2-50]
 gi|156865606|gb|EDO59037.1| hypothetical protein CLOL250_00094 [Clostridium sp. L2-50]
          Length = 219

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 82/176 (46%), Gaps = 22/176 (12%)

Query: 47  VTGQIEDHMAT----------LICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           + G+IE H++            +  +L  ++ +   K + + +N+ GG V AG+AI + +
Sbjct: 33  IIGEIEGHVSLPSDTKTTKYEHVLPELAVVQDDESIKGVLVLLNTVGGDVEAGLAIAEML 92

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH-----QPSGGFSGQASDI 151
             I  P+ T  +G + S+G  L  +G+  + F +P A +++H         G       I
Sbjct: 93  ASISKPVVTLVLGGSHSIGVPLAVSGD--VSFIVPTATMVVHPLRVSDTVLGVRQNYEYI 150

Query: 152 ERHAQDIVKIK---RRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           ER    I++      +++E  +++     +E+ K  D   ++   EA   G++D++
Sbjct: 151 ERMQDRIIQFTSCHSKIDEDSLRSIMFNTQELSK--DIGSVLVGKEAVKCGIIDRI 204


>gi|160897080|ref|YP_001562662.1| peptidase S14 ClpP [Delftia acidovorans SPH-1]
 gi|160362664|gb|ABX34277.1| peptidase S14 ClpP [Delftia acidovorans SPH-1]
          Length = 287

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 67/134 (50%), Gaps = 2/134 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           ++++ INSPGG +  G+AIY+ ++  K  ++   +G AAS  S++  +G+  ++ A    
Sbjct: 79  DVTVNINSPGGDMFEGLAIYNLLREHKGQVTVKVLGLAASAASVIAMSGDT-VQIARAG- 136

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H      +G  +D    A  +      + +IY    G   + + K +D +  +  S
Sbjct: 137 FLMIHNAWVIAAGNRNDFREIADWLEPFDSAMADIYAARTGAEQKAMAKLMDAESWLGGS 196

Query: 194 EACDWGVVDKVLMS 207
            A + G  D++L S
Sbjct: 197 SAVEQGFADELLPS 210


>gi|121605153|ref|YP_982482.1| peptidase S14, ClpP [Polaromonas naphthalenivorans CJ2]
 gi|120594122|gb|ABM37561.1| ATP-dependent Clp protease proteolytic subunit ClpP [Polaromonas
           naphthalenivorans CJ2]
          Length = 674

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 3/131 (2%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I++ INS GG V  G+AIY+ ++  K  ++    G A S+ SL+  AG+K +  A  NA 
Sbjct: 62  ITVRINSIGGSVPDGLAIYNALRRHKAEVTIEIDGMALSVASLIAMAGDK-VNMA-NNAM 119

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD-RDHIMSAS 193
           +++H P    SG + ++   A  +      ++  Y    G     +    D +DH  +A 
Sbjct: 120 LMIHGPWSYVSGNSVELRDMADQLDTWAAAMSNSYAARTGDQPAMLALLTDGKDHFYTAE 179

Query: 194 EACDWGVVDKV 204
           +A     VD +
Sbjct: 180 QALAEKFVDAI 190


>gi|264679702|ref|YP_003279609.1| peptidase S14, ClpP [Comamonas testosteroni CNB-2]
 gi|262210215|gb|ACY34313.1| peptidase S14, ClpP [Comamonas testosteroni CNB-2]
          Length = 697

 Score = 46.6 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 3/131 (2%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I++ INS GG V  G+AIY+ M+  K  I+    G A S+ SL+   G+  +  A  NA 
Sbjct: 62  ITVRINSLGGSVPDGIAIYNAMKRHKATITVEVDGIAYSIASLIAMGGDT-VNMA-SNAL 119

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD-RDHIMSAS 193
           +++H P    +G ++++   A  +      ++  Y    G     +    D +DH  +A 
Sbjct: 120 MMIHAPWTYAAGNSAELRELADQLDTWANAMSTSYAAKTGDQAGALALLTDGKDHFFTAE 179

Query: 194 EACDWGVVDKV 204
           EA     +D +
Sbjct: 180 EALALKFIDAI 190


>gi|124005680|ref|ZP_01690519.1| fels-1 prophage protease subunits of ATP-dependent proteases
           [Microscilla marina ATCC 23134]
 gi|123988748|gb|EAY28354.1| fels-1 prophage protease subunits of ATP-dependent proteases
           [Microscilla marina ATCC 23134]
          Length = 399

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 72/142 (50%), Gaps = 14/142 (9%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPP-----ISTFCMGQAASMGSLLLSAGEK-GM 126
           + +++ INSPGG +T G++I   +  I        I T+  G A S+  L+   G+K GM
Sbjct: 51  RRLNVRINSPGGKITDGLSICAAILNINQTTPGVRIDTYVDGLALSIAGLIAVCGKKVGM 110

Query: 127 -RFALPNARILLHQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
             F    A+++LH P   G  S   ++  +H + ++++K  L  +     G+  + +   
Sbjct: 111 CNF----AKLMLHNPFIGGKNSTDPNEAGQH-ETLMQVKEMLLTLLATRTGQKVDTLSAM 165

Query: 184 LDRDHIMSASEACDWGVVDKVL 205
           +++   +SA+EA   G VD+V 
Sbjct: 166 MNQTTWLSAAEAKRQGFVDEVF 187


>gi|323691287|ref|ZP_08105562.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           symbiosum WAL-14673]
 gi|323504627|gb|EGB20414.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           symbiosum WAL-14673]
          Length = 275

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 70/132 (53%), Gaps = 4/132 (3%)

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           FL   +  ++I +Y NS GG V AG+AIY+ ++        +  G AAS+ S+++ A ++
Sbjct: 66  FLNQLDGYEDIDIYFNSGGGDVFAGLAIYNQLKRYSGHKVGYVDGMAASIASVIMFACDE 125

Query: 125 GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC--GKTYEEVEK 182
            + FA   A+ ++H+P     G A D +   + +   +  + ++Y ++   G T ++++ 
Sbjct: 126 -LHFA-TGAQAMIHKPLCMAWGNADDFKEVIKQLDLCEDSILDVYEEHLKEGVTRDKIKS 183

Query: 183 TLDRDHIMSASE 194
            + ++   S +E
Sbjct: 184 FMAKEKWFSGAE 195


>gi|302385169|ref|YP_003820991.1| peptidase S14 ClpP [Clostridium saccharolyticum WM1]
 gi|302195797|gb|ADL03368.1| peptidase S14 ClpP [Clostridium saccharolyticum WM1]
          Length = 252

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 66/130 (50%), Gaps = 2/130 (1%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I L+INS GG V  G+AIY+ ++           G A S+  L+L A ++  R       
Sbjct: 63  IELHINSNGGSVKEGVAIYNLLKQKSNHKIGIVDGVAHSVAFLILQACDE--RKMCLGTT 120

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
            L+H      +G A+ + ++A D+  +     +++++    T EE+   ++ +  ++  +
Sbjct: 121 ALVHNMWMHCAGNATQLRKYADDLDDMMEANRQVFLERASITEEELTTLMEAETYLTPDK 180

Query: 195 ACDWGVVDKV 204
           A ++G++D++
Sbjct: 181 AIEYGLIDEI 190


>gi|18310659|ref|NP_562593.1| Clp protease [Clostridium perfringens str. 13]
 gi|18145340|dbj|BAB81383.1| conserved hypothetical protein [Clostridium perfringens str. 13]
          Length = 247

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 82/180 (45%), Gaps = 22/180 (12%)

Query: 43  RIVFVTGQIEDHMAT----------LICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI 92
           +++ + GQIE H              +  QL+ +E  +  K I   +N+ GG V AG+AI
Sbjct: 51  QVLTIIGQIEGHSVQPPQTKTTKYEHMIPQLIDIEQNDRIKGILFVLNTVGGDVEAGLAI 110

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIE 152
            + ++ +K P  +  +G   S+G  L +A +    F  P+A +++H      +G    + 
Sbjct: 111 AEMIRSLKKPTVSLVIGGGHSIGVPLATASQ--YSFISPSATMIIHPIR--MNGLVIGVP 166

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
           +      K++ R+N+  ++      + ++K +        D   I+   EA   G++++V
Sbjct: 167 QTFNYFNKMQERINDFIIRTSEIKLDVLKKMMMQTDELLNDMGTILVGEEAVKCGLINEV 226


>gi|330974400|gb|EGH74466.1| peptidase S14, ClpP [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 148

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 34/52 (65%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           K  ++YINSPGG +  G+AIY+ ++    PI+T  +G AAS  S++  AG K
Sbjct: 67  KPATVYINSPGGDMFEGLAIYNRLREHSQPITTKVLGLAASAASVIYMAGAK 118


>gi|254298353|ref|ZP_04965805.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei 406e]
 gi|157808321|gb|EDO85491.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei 406e]
          Length = 366

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 67/131 (51%), Gaps = 4/131 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I++ INS GG V    AIY+ ++     +     G AAS  SL+L A ++     +P NA
Sbjct: 54  ITVAINSMGGDVFDAFAIYNALRRHAGKVKGRVDGIAASAASLVLMACDE---IEMPENA 110

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H P    +G++ D+ R A+ +      +   Y +  G + ++V   +D +  ++A+
Sbjct: 111 LLMIHHPHTVAAGESKDLRRVAELLDNASAGILAAYAQRSGLSEDDVRAMMDAETWLTAA 170

Query: 194 EACDWGVVDKV 204
           +A + G  D +
Sbjct: 171 QAKEKGFCDVI 181


>gi|167759143|ref|ZP_02431270.1| hypothetical protein CLOSCI_01490 [Clostridium scindens ATCC 35704]
 gi|167663261|gb|EDS07391.1| hypothetical protein CLOSCI_01490 [Clostridium scindens ATCC 35704]
          Length = 275

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 72/136 (52%), Gaps = 4/136 (2%)

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           FL   +  ++I +Y NS GG V AG+AIY+ ++        +  G AAS+ S+++ A ++
Sbjct: 66  FLNQLDGYEDIDIYFNSGGGDVFAGLAIYNQLKRYSGHKVGYVDGMAASIASVIMFACDE 125

Query: 125 GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC--GKTYEEVEK 182
            + FA   A+ ++H+P     G A D +   + +   +  + ++Y ++   G T ++++ 
Sbjct: 126 -LHFA-TGAQAMIHKPLCMAWGNADDFKEVIKQLDLCEDSILDVYEEHLKEGVTRDKIKS 183

Query: 183 TLDRDHIMSASEACDW 198
            + ++   S +E  ++
Sbjct: 184 FMAKEKWFSGAELAEY 199


>gi|126470033|dbj|BAF48118.1| hypothetical protein [Rhodococcus rhodochrous]
          Length = 133

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 10/109 (9%)

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASD----IERHAQDI 158
           I   C+G+    G  LL+A ++  R +  +    L +P   +SG A+D     ER  + +
Sbjct: 27  IHAICLGELVGAGVALLTAADR--RDSGVHTVFHLREPRTRYSGYAADAAAYTERQQRHL 84

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
             +  RL  I    CG++ +E+   +    I++A +A D+G++D V  S
Sbjct: 85  QTLHERLAHI----CGRSVDEIAADMRNQRILTAEQARDYGLIDTVTES 129


>gi|56479550|ref|YP_161139.1| hypothetical protein ebA7261 [Aromatoleum aromaticum EbN1]
 gi|56315593|emb|CAI10238.1| similar to Fels-1 prophage protease subunits of ATP-dependent
           protease [Aromatoleum aromaticum EbN1]
          Length = 421

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 12/136 (8%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I++ I S GG +  G+A+++ ++     I T   G AAS GS++  AG++   +A  N+
Sbjct: 106 QITVRITSFGGKLDHGLAMHNALRRHPARIITVVEGVAASAGSIVAMAGDEIHMYA--NS 163

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLN----EIYVKNCGKTYEEVEKTLDRDHI 189
            +++H    G + +  D E +  +     R LN    E Y    GKT +EV   +  D  
Sbjct: 164 TMMVH----GVTLR--DDEGNEVEDDDATRALNASIVETYSARTGKTADEVAALIATDTW 217

Query: 190 MSASEACDWGVVDKVL 205
           M+A EA   G  D+V+
Sbjct: 218 MTAREALAAGFADRVI 233


>gi|304395848|ref|ZP_07377730.1| peptidase S14 ClpP [Pantoea sp. aB]
 gi|304356217|gb|EFM20582.1| peptidase S14 ClpP [Pantoea sp. aB]
          Length = 282

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 71/132 (53%), Gaps = 2/132 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           ++++ INSPGG +  G+AIY+ ++  +  ++   +G AAS  S++  AG+  ++     A
Sbjct: 75  DVTVNINSPGGDMFEGLAIYNLLREYEGKVTVKVLGLAASAASIIAMAGDD-IQIGR-GA 132

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H       G   D+E+ A D+    + + +IY    G +  +V K +D +  +  S
Sbjct: 133 FLMIHNCWVYAMGNRHDLEQIAADMEPFDKAMGDIYSHRSGLSTGDVAKMMDSETYIGGS 192

Query: 194 EACDWGVVDKVL 205
           +A D G  D++L
Sbjct: 193 DAVDKGFADRLL 204


>gi|110799331|ref|YP_696364.1| Clp protease [Clostridium perfringens ATCC 13124]
 gi|168211435|ref|ZP_02637060.1| clp protease [Clostridium perfringens B str. ATCC 3626]
 gi|168214490|ref|ZP_02640115.1| clp protease [Clostridium perfringens CPE str. F4969]
 gi|168216964|ref|ZP_02642589.1| clp protease [Clostridium perfringens NCTC 8239]
 gi|182626367|ref|ZP_02954121.1| clp protease [Clostridium perfringens D str. JGS1721]
 gi|110673978|gb|ABG82965.1| clp protease [Clostridium perfringens ATCC 13124]
 gi|170710555|gb|EDT22737.1| clp protease [Clostridium perfringens B str. ATCC 3626]
 gi|170714034|gb|EDT26216.1| clp protease [Clostridium perfringens CPE str. F4969]
 gi|177908318|gb|EDT70866.1| clp protease [Clostridium perfringens D str. JGS1721]
 gi|182380948|gb|EDT78427.1| clp protease [Clostridium perfringens NCTC 8239]
          Length = 229

 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 82/180 (45%), Gaps = 22/180 (12%)

Query: 43  RIVFVTGQIEDHMATL----------ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI 92
           +++ + GQIE H              +  QL+ +E  +  K I   +N+ GG V AG+AI
Sbjct: 33  QVLTIIGQIEGHSVQPPQTKTTKYEHMIPQLIDIEQNDRIKGILFVLNTVGGDVEAGLAI 92

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIE 152
            + ++ +K P  +  +G   S+G  L +A +    F  P+A +++H      +G    + 
Sbjct: 93  AEMIRSLKKPTVSLVIGGGHSIGVPLATASQ--YSFISPSATMIIHPIR--MNGLVIGVP 148

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
           +      K++ R+N+  ++      + ++K +        D   I+   EA   G++++V
Sbjct: 149 QTFNYFNKMQERINDFIIRTSEIKLDVLKKMMMQTDELLNDMGTILVGEEAVKCGLINEV 208


>gi|311107208|ref|YP_003980061.1| Clp protease family protein [Achromobacter xylosoxidans A8]
 gi|310761897|gb|ADP17346.1| Clp protease family protein [Achromobacter xylosoxidans A8]
          Length = 279

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 67/141 (47%), Gaps = 2/141 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           +++++ +NSPGG    G+AIY+ ++  K  ++   +G AAS  S++  AG+  +      
Sbjct: 75  RDVTVNVNSPGGNFFEGVAIYNALREHKAKVTIKVLGLAASAASVIAMAGDDILMG--QG 132

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           + +++H       G   D+   A  +      + ++Y    G T ++    +D++  + A
Sbjct: 133 SFLMIHNAWAVAIGNRHDLVDAAAKLEPFDEAMAQVYAARTGLTSKQAAALMDKETWIGA 192

Query: 193 SEACDWGVVDKVLMSRIDIEE 213
            +A + G    +L     IE+
Sbjct: 193 DQAVEDGFATGLLDGAAVIEQ 213


>gi|237738215|ref|ZP_04568696.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           mortiferum ATCC 9817]
 gi|229420095|gb|EEO35142.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           mortiferum ATCC 9817]
          Length = 361

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 66/136 (48%), Gaps = 7/136 (5%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
           K++ L INSPGG V   +A+Y  ++       ++ +  G AAS  ++L  A  K +    
Sbjct: 54  KKLELKINSPGGDVFEAVAMYHEIKRFAQGKEVTAYIDGMAASAATILTLAANKTIMG-- 111

Query: 131 PNARILLHQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
                ++H P    G++    ++    + + K K  L ++Y + C  + +E+ + +D+  
Sbjct: 112 KGCYFMIHNPLMYMGYAN-VEEMNEAIEHLNKTKDNLLDLYEEKCKLSRDEIAEKMDKTT 170

Query: 189 IMSASEACDWGVVDKV 204
             +A EA   G +D++
Sbjct: 171 WYTAEEALQAGFIDEI 186


>gi|33337390|gb|AAQ13361.1|U68753_1 putative ATP-dependent protease proteolytic subunit, ClpP
           [Streptococcus pyogenes]
          Length = 77

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 2/71 (2%)

Query: 137 LHQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           +HQP    G   Q +D+   A+ ++K + RL +I  +N GKT +++ K  +RD+ MSA E
Sbjct: 1   IHQPMGGTGGGTQQTDMAIAAEHLLKTRHRLEKILAQNAGKTIKQIHKDAERDYWMSAEE 60

Query: 195 ACDWGVVDKVL 205
              +G +D+++
Sbjct: 61  TLAYGFIDEIM 71


>gi|19745790|ref|NP_606926.1| putative ClpP protease [Streptococcus pyogenes MGAS8232]
 gi|94988204|ref|YP_596305.1| ATP-dependent endopeptidase Clp proteolytic subunit [Streptococcus
           phage 9429.1]
 gi|94990086|ref|YP_598186.1| ATP-dependent endopeptidase Clp proteolytic subunit clpP
           [Streptococcus phage 10270.1]
 gi|94993998|ref|YP_602096.1| ATP-dependent endopeptidase clp proteolytic subunit clpP
           [Streptococcus phage 10750.1]
 gi|139474106|ref|YP_001128822.1| putative phage ClpP protease [Streptococcus pyogenes str. Manfredo]
 gi|19747933|gb|AAL97425.1| putative ClpP protease [Streptococcus pyogenes MGAS8232]
 gi|94541712|gb|ABF31761.1| ATP-dependent endopeptidase clp proteolytic subunit [Streptococcus
           phage 9429.1]
 gi|94543594|gb|ABF33642.1| ATP-dependent endopeptidase clp proteolytic subunit clpP
           [Streptococcus phage 10270.1]
 gi|94547506|gb|ABF37552.1| ATP-dependent endopeptidase clp proteolytic subunit clpP
           [Streptococcus phage 10750.1]
 gi|134272353|emb|CAM30609.1| putative phage ClpP protease [Streptococcus pyogenes str. Manfredo]
          Length = 221

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 69/133 (51%), Gaps = 3/133 (2%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I L +NS GG+VT G  +Y  ++  K  ++    G AAS  S+ +   +K +    P A
Sbjct: 43  DIILEVNSNGGLVTVGSEVYTALRNYKGKVTAEITGMAASAASVAVMGADKVVMS--PTA 100

Query: 134 RILLHQPSGGF-SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           ++++H+    + +G + D+++ +  +    + +   YV   G + +E+   +  +  MSA
Sbjct: 101 QMMVHKALFNWVAGNSDDLDKASNALKSSDKAIVNAYVAKTGLSEDEIMNLMRNETFMSA 160

Query: 193 SEACDWGVVDKVL 205
            +A + G  D+V+
Sbjct: 161 QDAVEKGFADEVM 173


>gi|220916410|ref|YP_002491714.1| peptidase S14 ClpP [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954264|gb|ACL64648.1| peptidase S14 ClpP [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 260

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 65/133 (48%), Gaps = 5/133 (3%)

Query: 45  VFVTGQIEDHMATLICAQLLF--LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           V VT +IE      I AQ     L+  +  + ++++INSPGG V  G A+   ++ ++  
Sbjct: 48  VIVTPEIEALFGVGISAQGFREQLKQADGARRVNVHINSPGGDVDQGKAMLSGLRSLRAG 107

Query: 103 ISTFCM-GQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKI 161
                + G AAS  +++    ++ +    P A  ++H+ SGG  G A+D E+ A+ +   
Sbjct: 108 EKVAVVEGLAASAATVVAMGADRVV--MEPEAVFMIHEASGGMWGSAADHEKFAEILRMD 165

Query: 162 KRRLNEIYVKNCG 174
              +  +Y K  G
Sbjct: 166 NAAVRALYAKKTG 178


>gi|253578408|ref|ZP_04855680.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850726|gb|EES78684.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 234

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/229 (20%), Positives = 104/229 (45%), Gaps = 38/229 (16%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNR-----GERSYDIYSRLLKERIVFVTGQIEDHM 55
           M  + C  ++SE+        + E TN      G+   +  SR  K  ++ + G++E H 
Sbjct: 1   MKLQNCETQESEN-------KIQESTNEQIKDMGQVVLNSNSRKHKVELLTIIGEVEGHE 53

Query: 56  AT----------LICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIST 105
           +            +  +L  +E +   + + + +N+ GG V AG+AI + +  +  P  +
Sbjct: 54  SAPSHSKTTKYEHVLPKLAIIEDDEEIEGLLILLNTVGGDVEAGLAIAEMIASLSIPTVS 113

Query: 106 FCMGQAASMGSLLLSAGEKGMRFALPNARILLH--QPSGGFSGQASDIERHAQDIVKIKR 163
             +G   S+G  +  + +    FA+P+A +++H  + +G F G A    +  +++ KI+ 
Sbjct: 114 LVLGGGHSIGVPMAVSAD--YSFAVPSATMVIHPVRSNGMFIGVA----QTYRNMEKIQD 167

Query: 164 RLNEIYVKNCGKTYEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
           R+     ++   + + +E+ +        D   ++   EA   G++D+V
Sbjct: 168 RITTFISEHSKASQKRLEELMLDTSQLVKDVGTMLEGKEAVKEGLIDEV 216


>gi|296447012|ref|ZP_06888946.1| peptidase S14 ClpP [Methylosinus trichosporium OB3b]
 gi|296255455|gb|EFH02548.1| peptidase S14 ClpP [Methylosinus trichosporium OB3b]
          Length = 287

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 67/131 (51%), Gaps = 2/131 (1%)

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K +++ INSPGG +  G+AI++ ++  K  ++   MG AAS  SL+  AG++ +     
Sbjct: 78  EKPVTVSINSPGGDMFEGLAIFNMLKDHKAEVTVKVMGLAASAASLIAMAGDQILMGQ-- 135

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
            + +++H   G   G   D+   A         + EIY    G+T +++   +D +  ++
Sbjct: 136 GSFLMIHNAWGVVVGNRHDMRAGADMFEPFDSAMAEIYAARSGQTGDKIAAMMDAETFIN 195

Query: 192 ASEACDWGVVD 202
           A +A D G  D
Sbjct: 196 AKDARDLGFSD 206


>gi|225567906|ref|ZP_03776931.1| hypothetical protein CLOHYLEM_03979 [Clostridium hylemonae DSM
           15053]
 gi|225163194|gb|EEG75813.1| hypothetical protein CLOHYLEM_03979 [Clostridium hylemonae DSM
           15053]
          Length = 232

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 86/182 (47%), Gaps = 26/182 (14%)

Query: 43  RIVFVTGQIEDHMAT------LICAQLLFLEAENPQKE----ISLYINSPGGVVTAGMAI 92
           +++ + G+IE H A            LL + AE    E    + + +N+ GG V AG++I
Sbjct: 32  KLLTIIGEIEGHEAVSGNTKATKYEHLLPMLAEVEDSEEIEGMLILLNTLGGDVEAGLSI 91

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH--QPSGGFSGQASD 150
            + +  +  P  +  +G + S+G  L  + +    F +P+  +++H  + SG F G    
Sbjct: 92  AEMIASLSKPTVSLVLGGSHSIGGPLAVSAQ--YSFIVPSGTMIIHPVRSSGMFIG---- 145

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDHIMSASEACDWGVVD 202
           +E+  +++++ + R+     K+   + E +EK +        D   ++   +A   G++D
Sbjct: 146 VEQSLRNMLRTQDRITRFLSKHSNMSQERIEKLMLNPTELVKDVGTLLEGEDAVKEGLID 205

Query: 203 KV 204
           +V
Sbjct: 206 EV 207


>gi|237738073|ref|ZP_04568554.1| ATP-dependent endopeptidase clp proteolytic subunit clpP
           [Fusobacterium mortiferum ATCC 9817]
 gi|229419953|gb|EEO35000.1| ATP-dependent endopeptidase clp proteolytic subunit clpP
           [Fusobacterium mortiferum ATCC 9817]
          Length = 257

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 55/99 (55%), Gaps = 4/99 (4%)

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+++++INS GG V AG+AIY  ++  +     +  G AAS+ S++  AG++     +P
Sbjct: 67  NKDLNIFINSSGGNVFAGLAIYHMLKRHEGKKKVYVDGVAASIASIIAMAGDE---IHIP 123

Query: 132 -NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIY 169
            NA +++H+     +G  +D+      + K+   + +IY
Sbjct: 124 KNAYLMIHRSWICTAGNKNDLLETISMLEKMDINMADIY 162


>gi|110803390|ref|YP_698964.1| Clp protease [Clostridium perfringens SM101]
 gi|168207521|ref|ZP_02633526.1| clp protease [Clostridium perfringens E str. JGS1987]
 gi|169342742|ref|ZP_02863782.1| clp protease [Clostridium perfringens C str. JGS1495]
 gi|110683891|gb|ABG87261.1| putative endopeptidase [Clostridium perfringens SM101]
 gi|169299248|gb|EDS81318.1| clp protease [Clostridium perfringens C str. JGS1495]
 gi|170661146|gb|EDT13829.1| clp protease [Clostridium perfringens E str. JGS1987]
          Length = 229

 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 82/180 (45%), Gaps = 22/180 (12%)

Query: 43  RIVFVTGQIEDHMATL----------ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI 92
           +++ + GQIE H              +  QL+ +E  +  K I   +N+ GG V AG+AI
Sbjct: 33  QVLTIIGQIEGHSVQPPQTKTTKYEHMIPQLIDIEQNDRIKGILFVLNTVGGDVEAGLAI 92

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIE 152
            + ++ +K P  +  +G   S+G  L +A +    F  P+A +++H      +G    + 
Sbjct: 93  AEMIRSLKKPTVSLVIGGGHSIGVPLATASK--YSFISPSATMIIHPIR--MNGLVIGVP 148

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
           +      K++ R+N+  ++      + ++K +        D   I+   EA   G++++V
Sbjct: 149 QTFNYFNKMQERINDFIIRTSEIKLDVLKKMMMQTDELLNDMGTILVGEEAVKCGLINEV 208


>gi|117624540|ref|YP_853453.1| hypothetical protein APECO1_4214 [Escherichia coli APEC O1]
 gi|218559264|ref|YP_002392177.1| Clp protease [Escherichia coli S88]
 gi|300935777|ref|ZP_07150741.1| Clp protease [Escherichia coli MS 21-1]
 gi|301029851|ref|ZP_07192883.1| Clp protease [Escherichia coli MS 196-1]
 gi|115513664|gb|ABJ01739.1| hypothetical protein APECO1_4214 [Escherichia coli APEC O1]
 gi|218366033|emb|CAR03778.1| putative Clp protease [Escherichia coli S88]
 gi|299877308|gb|EFI85519.1| Clp protease [Escherichia coli MS 196-1]
 gi|300459048|gb|EFK22541.1| Clp protease [Escherichia coli MS 21-1]
 gi|323948766|gb|EGB44665.1| hypothetical protein ERKG_04777 [Escherichia coli H252]
          Length = 178

 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 77/164 (46%), Gaps = 15/164 (9%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM 108
           GQ+++H  T +              E++++I+S GG   AG   Y+ ++ +   + T  +
Sbjct: 17  GQLQNHCLTAL---------SQGATELNIHISSQGGETAAGFTAYNFLKSLPVTVRTHNI 67

Query: 109 GQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER---HAQDIVKIKRRL 165
               S+ +++  AG +  RFA P +R LLH     F+  A+D  R   + + +     R 
Sbjct: 68  SNVESIANIVFLAGSE--RFANPLSRFLLHPLLWCFASPAADHARLREYGKCLDNDLDRF 125

Query: 166 NEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
            E +  + G T+      +    I+ A++A + G+++ +  +R+
Sbjct: 126 VETFNIDIG-THIRWASLIADSTILDANKALEHGIINSIKTARL 168


>gi|158320570|ref|YP_001513077.1| peptidase S14 ClpP [Alkaliphilus oremlandii OhILAs]
 gi|158140769|gb|ABW19081.1| peptidase S14 ClpP [Alkaliphilus oremlandii OhILAs]
          Length = 245

 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 22/176 (12%)

Query: 47  VTGQIEDHMATL----------ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           + GQIE HM             I  QL+ +E +   K + + +N+ GG V AG+AI + +
Sbjct: 56  IIGQIEGHMIAAPQNKSTKYEHIIPQLVAVEEDPKIKGLLVILNTMGGDVEAGLAIAELI 115

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQ 156
             +  P  T  +G   S+G  L +AG+    F  P A + +H      +G    I +  +
Sbjct: 116 GSLSKPTVTLVIGGGHSIGVPLATAGD--YSFIAPTATMTIHPIR--MNGLVIGIPQTFR 171

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
             +K++ R+    ++      E     +        D   I+   EA   G++D+V
Sbjct: 172 YFLKMQERIINFVLRTSNVERETFTSLMNATDELANDVGTILIGEEAVHHGLIDEV 227


>gi|147828564|emb|CAN59881.1| hypothetical protein VITISV_014403 [Vitis vinifera]
          Length = 443

 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 6/49 (12%)

Query: 64  LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAA 112
           L  +A   +K +S      GG VTAGMAI+DTM+ I+P + T C+G AA
Sbjct: 205 LLADASGLRKALS------GGXVTAGMAIFDTMRHIRPDVPTVCVGLAA 247


>gi|125974136|ref|YP_001038046.1| peptidase S14, ClpP [Clostridium thermocellum ATCC 27405]
 gi|125714361|gb|ABN52853.1| peptidase S14, ClpP [Clostridium thermocellum ATCC 27405]
          Length = 242

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 78/165 (47%), Gaps = 4/165 (2%)

Query: 43  RIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           R +++ G I  E  +   +  +    E  + + +I+++INSPGG + A   IY+ +   K
Sbjct: 24  RTLYIDGPIAEESWLGDEVTPKQFKSELLSGEGDITIWINSPGGDIFAANQIYNMLMDYK 83

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
             ++    G AAS  S++  AG  G  F  P + +++H P     G   ++E+    + +
Sbjct: 84  GKVTVKIDGIAASAASVIAMAG--GDVFMSPVSMMMIHNPMTIAIGDTEEMEKAIAMLEE 141

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           IK  +   Y    G +  ++   +D +   +A +A + G  D +L
Sbjct: 142 IKESIINAYELKTGLSRAKISHLMDAESWFNARKAVELGFADGIL 186


>gi|281418279|ref|ZP_06249299.1| peptidase S14 ClpP [Clostridium thermocellum JW20]
 gi|281409681|gb|EFB39939.1| peptidase S14 ClpP [Clostridium thermocellum JW20]
          Length = 241

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 78/165 (47%), Gaps = 4/165 (2%)

Query: 43  RIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           R +++ G I  E  +   +  +    E  + + +I+++INSPGG + A   IY+ +   K
Sbjct: 24  RTLYIDGPIAEESWLGDEVTPKQFKSELLSGEGDITIWINSPGGDIFAANQIYNMLMDYK 83

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
             ++    G AAS  S++  AG  G  F  P + +++H P     G   ++E+    + +
Sbjct: 84  GKVTVKIDGIAASAASVIAMAG--GDVFMSPVSMMMIHNPMTIAIGDTEEMEKAIAMLEE 141

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           IK  +   Y    G +  ++   +D +   +A +A + G  D +L
Sbjct: 142 IKESIINAYELKTGLSRAKISHLMDAESWFNARKAVELGFADGIL 186


>gi|294783567|ref|ZP_06748891.1| ClpP protease family protein [Fusobacterium sp. 1_1_41FAA]
 gi|294480445|gb|EFG28222.1| ClpP protease family protein [Fusobacterium sp. 1_1_41FAA]
          Length = 238

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 75/148 (50%), Gaps = 10/148 (6%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
           E+ ++INS GG V AG+AI + ++  K     +  G +AS  S++     +     +P N
Sbjct: 59  EVHVHINSYGGDVFAGLAISNMLKNHKAKTVAYVDGLSASSASIIAFGCNE---IVIPSN 115

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC--GKTYEEVEKTLDRDHIM 190
           A +++H+ S G  G A D  +  + + KI+  + + Y++    G T E++   +  +   
Sbjct: 116 AYLMIHRVSCGLFGNADDFLKQVEVMEKIEEGIVDTYMEKAVEGVTKEQIYDLMKAETWF 175

Query: 191 SASEACDWGVV----DKVLMSRIDIEEK 214
           +  +  ++  V    + + ++++D ++K
Sbjct: 176 TGKDCLNYFDVKVDNNPIYLNKVDTKQK 203


>gi|256003556|ref|ZP_05428546.1| peptidase S14 ClpP [Clostridium thermocellum DSM 2360]
 gi|255992580|gb|EEU02672.1| peptidase S14 ClpP [Clostridium thermocellum DSM 2360]
 gi|316941379|gb|ADU75413.1| peptidase S14 ClpP [Clostridium thermocellum DSM 1313]
          Length = 241

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 78/165 (47%), Gaps = 4/165 (2%)

Query: 43  RIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           R +++ G I  E  +   +  +    E  + + +I+++INSPGG + A   IY+ +   K
Sbjct: 24  RTLYIDGPIAEESWLGDEVTPKQFKSELLSGEGDITIWINSPGGDIFAANQIYNMLMDYK 83

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
             ++    G AAS  S++  AG  G  F  P + +++H P     G   ++E+    + +
Sbjct: 84  GKVTVKIDGIAASAASVIAMAG--GDVFMSPVSMMMIHNPMTIAIGDTEEMEKAIAMLEE 141

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           IK  +   Y    G +  ++   +D +   +A +A + G  D +L
Sbjct: 142 IKESIINAYELKTGLSRAKISHLMDAESWFNARKAVELGFADGIL 186


>gi|299145813|ref|ZP_07038881.1| ATP-dependent Clp protease proteolytic subunit 2 (Endopeptidase Clp
           2) [Bacteroides sp. 3_1_23]
 gi|298516304|gb|EFI40185.1| ATP-dependent Clp protease proteolytic subunit 2 (Endopeptidase Clp
           2) [Bacteroides sp. 3_1_23]
          Length = 423

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 10/154 (6%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM 108
           G+I++        + L+++      +I + INS GG V  GM  +  +Q     + T   
Sbjct: 25  GKIDEESTRNFNDEFLWIQDYVKPSKIVISINSEGGSVLYGMGTFSIIQQCPIEVETIVE 84

Query: 109 GQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           G AASM S+L +AG +   +    + +++H P      + S    + Q +   ++++  I
Sbjct: 85  GLAASMASVLWAAGTRS--YMRDYSILMIHNPF--IRDEKSCNPDNEQIVNAFQKQIETI 140

Query: 169 YVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
           Y K  G T  +V        IM   E CD    D
Sbjct: 141 YHKRFGLTKAKVR------EIMDGKEGCDGTYFD 168


>gi|304316281|ref|YP_003851426.1| peptidase S14 ClpP [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
 gi|302777783|gb|ADL68342.1| peptidase S14 ClpP [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
          Length = 242

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 78/165 (47%), Gaps = 4/165 (2%)

Query: 43  RIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           R +++ G I  E  +   +  +    E  + + +I+++INSPGG + A   IY+ +   K
Sbjct: 24  RTLYIDGPIAEESWLGDEVTPKQFKSELLSGEGDITIWINSPGGDIFAANQIYNMLMDYK 83

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
             ++    G AAS  S++  AG  G  F  P + +++H P     G   ++E+    + +
Sbjct: 84  GKVTVKIDGIAASAASVIAMAG--GDVFMSPVSMMMIHNPMTIAIGDTEEMEKAIAMLEE 141

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           IK  +   Y    G +  ++   +D +   +A +A + G  D +L
Sbjct: 142 IKESIINAYELKTGLSRAKISHLMDAESWFNARKAVELGFADGIL 186


>gi|301299543|ref|ZP_07205809.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300852844|gb|EFK80462.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 239

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 2/132 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I + I S GG V     IY  ++     +     G AAS  S++  AG+  +  A P A
Sbjct: 45  DIVVDIASNGGDVFVASEIYSMLKNNASNVKVNVTGLAASAASVIAMAGDT-VSIA-PTA 102

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           +I++H+      G A D+   A  +  I + +   Y    G    ++ + +  +  ++A 
Sbjct: 103 QIMIHKAWTNMDGNADDLNHEAGVLNNIDKSIASAYELKTGMKQSDLLQMMSNETWLTAQ 162

Query: 194 EACDWGVVDKVL 205
           +A D G  D+++
Sbjct: 163 DAVDKGFADEIM 174


>gi|90961265|ref|YP_535181.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus phage
           Sal2]
 gi|90820459|gb|ABD99098.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus phage
           Sal2]
          Length = 239

 Score = 45.1 bits (105), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 2/132 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I + I S GG V     IY  ++     +     G AAS  S++  AG+  +  A P A
Sbjct: 45  DIVVDIASNGGDVFVASEIYSMLKNNASNVKVNVTGLAASAASVIAMAGDT-VSIA-PTA 102

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           +I++H+      G A D+   A  +  I + +   Y    G    ++ + +  +  ++A 
Sbjct: 103 QIMIHKAWTNMDGNADDLNHEAGVLNNIDKSIASAYELKTGMKQSDLLQMMSNETWLTAQ 162

Query: 194 EACDWGVVDKVL 205
           +A D G  D+++
Sbjct: 163 DAVDKGFADEIM 174


>gi|212722416|ref|NP_001132797.1| hypothetical protein LOC100194286 [Zea mays]
 gi|194695418|gb|ACF81793.1| unknown [Zea mays]
          Length = 158

 Score = 45.1 bits (105), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 6/57 (10%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQK 73
           G  PMV+E      R   + S+L + RI+   G +ED MA +I AQLL+L+A +P K
Sbjct: 85  GPSPMVME------RFQSVVSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAIDPNK 135


>gi|153812753|ref|ZP_01965421.1| hypothetical protein RUMOBE_03160 [Ruminococcus obeum ATCC 29174]
 gi|149831113|gb|EDM86202.1| hypothetical protein RUMOBE_03160 [Ruminococcus obeum ATCC 29174]
          Length = 243

 Score = 45.1 bits (105), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 41/196 (20%), Positives = 91/196 (46%), Gaps = 26/196 (13%)

Query: 29  GERSYDIYSRLLKERIVFVTGQIEDHMAT----------LICAQLLFLEAENPQKEISLY 78
           GE + D   +  +  ++ + G++E H A            +  +L  +E +   + + + 
Sbjct: 33  GELTLDQNVKRHRIELLTIIGEVEGHDAAPSQSKTTKYEHVLPKLAMIEDDENVEGLLIL 92

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           +N+ GG V AG+AI + +  +  P  +  +G   S+G  +  + +    FA+P+A +++H
Sbjct: 93  LNTVGGDVEAGLAIAEMIASLSIPTVSLVLGGGHSIGVPMAVSAD--YSFAVPSATMVIH 150

Query: 139 --QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDH 188
             + SG F G A    +  +++ KI+ R+      +   + E +E+ +        D   
Sbjct: 151 PVRSSGMFIGVA----QTYRNMEKIQDRITGFIAAHSRASQERLEELMLDTSQLVKDVGT 206

Query: 189 IMSASEACDWGVVDKV 204
           ++   EA   G++D++
Sbjct: 207 LLEGEEAVKEGLIDEI 222


>gi|257870381|ref|ZP_05650034.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
 gi|257804545|gb|EEV33367.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
          Length = 238

 Score = 45.1 bits (105), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 67/151 (44%), Gaps = 12/151 (7%)

Query: 59  ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLL 118
           I A+L+    +    ++ + +NS GG V  G+ IY+ ++     I+   M  AAS  + +
Sbjct: 43  IDAKLIRDNLDGVTDDVVIRLNSNGGDVFQGVEIYNYLKNHSSHITVEVMATAASAATFI 102

Query: 119 LSAGEK-----GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC 173
            +  ++     G  F       ++H+      G  +DI++  Q +  I   +  IY    
Sbjct: 103 CAGADEVIMNVGTSF-------MIHEAETVGWGNKTDIKKTLQALETIDDSILSIYADKT 155

Query: 174 GKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           G++ +++   ++     +A EA  +G  D V
Sbjct: 156 GQSKDQITTWINEARWFTADEAVKFGFADSV 186


>gi|225159289|ref|ZP_03725589.1| peptidase S14 ClpP [Opitutaceae bacterium TAV2]
 gi|224802142|gb|EEG20414.1| peptidase S14 ClpP [Opitutaceae bacterium TAV2]
          Length = 478

 Score = 45.1 bits (105), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 77/174 (44%), Gaps = 8/174 (4%)

Query: 40  LKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN-SPGGVVTAGMAIYDTMQF 98
           + +R + + G I    A  I  ++ +   +N +  I + I+ SPGG V AG  I   M+ 
Sbjct: 242 ISDRRIPLNGPISMRTADRIQERIDYFNNQNTEYPIFIVIDASPGGSVMAGYKILKAMEG 301

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
              P+ T     AASM + + +  ++   +A PNA +L HQ      G  ++     +++
Sbjct: 302 SAAPVYTVVKSFAASMAAGITTLSKQS--YAYPNAILLHHQIWTSSGGNLTEQREGVREL 359

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTL--DR---DHIMSASEACDWGVVDKVLMS 207
            +  RRL        G   E+  K +  +R   D I    +A D   VD ++ +
Sbjct: 360 EEWWRRLAAPIAAKMGIGLEDFIKQMYANRSTGDWIAFGDKARDLKWVDHIVTT 413


>gi|171913657|ref|ZP_02929127.1| ATP-dependent Clp protease proteolytic subunit [Verrucomicrobium
           spinosum DSM 4136]
          Length = 462

 Score = 45.1 bits (105), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 3/147 (2%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN-SPGGVVTAGMAIYDTMQ 97
           ++ +R + + G I    A  + A++ +    + +  I L I+ SPGG V AG  I   MQ
Sbjct: 214 VMSDRRIALNGPISMRTADNVIARINYFNNRDAKLPIFLVIDDSPGGSVMAGYKIVKAMQ 273

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
             + P+       AASM + + +  +    +A  N  IL HQ      G  +  +   ++
Sbjct: 274 GSQAPVHVVVKSFAASMAACIATVAKHS--YAYSNTVILHHQIHSFAGGNLTQQQEWLKE 331

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTL 184
           + +  RRL +      G + EE+ K +
Sbjct: 332 MEEWWRRLADPVAVKMGISREELIKQM 358


>gi|306827690|ref|ZP_07460966.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes ATCC 10782]
 gi|304430120|gb|EFM33153.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes ATCC 10782]
          Length = 221

 Score = 45.1 bits (105), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 68/133 (51%), Gaps = 3/133 (2%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I L +NS GG+VT G  +Y  ++  K  ++    G AAS  S+ +   +K +    P A
Sbjct: 43  DIILEVNSNGGLVTVGSEVYTALRNYKGKVTAEITGMAASAASVAVMGADKVVMS--PTA 100

Query: 134 RILLHQPSGGF-SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           ++++H+    +  G + D+++ +  +    + +   YV   G + +E+   +  +  MSA
Sbjct: 101 QMMVHKALFNWVCGNSDDLDKASNALKSSDKAIVNAYVAKTGLSEDEIMNLMRNETFMSA 160

Query: 193 SEACDWGVVDKVL 205
            +A + G  D+V+
Sbjct: 161 QDAVEKGFADEVM 173


>gi|13477031|ref|NP_108601.1| ClpP protease [Mesorhizobium loti MAFF303099]
 gi|14027794|dbj|BAB54387.1| mlr8523 [Mesorhizobium loti MAFF303099]
          Length = 281

 Score = 45.1 bits (105), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 2/132 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
            +I + INSPGG +  G+AIY+ ++  K  +S   MG AAS  S++  AG++ +   L  
Sbjct: 76  NDIVVKINSPGGDMFEGIAIYNLLREHKAKVSVQVMGWAASAASIIAMAGDE-ISMGL-G 133

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
             +++H   G   G   D+   A         + +IY    G    ++EK +D +  M  
Sbjct: 134 TFMMVHNAWGMVVGNRHDMRDAATLFDGFDSAIADIYQARTGLARADIEKLMDAETFMGP 193

Query: 193 SEACDWGVVDKV 204
           ++A   G  DKV
Sbjct: 194 TDAVAKGFADKV 205


>gi|114566793|ref|YP_753947.1| peptidase S14, ClpP [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114337728|gb|ABI68576.1| ATP-dependent Clp protease proteolytic subunit ClpP [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
          Length = 267

 Score = 45.1 bits (105), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 83/177 (46%), Gaps = 24/177 (13%)

Query: 47  VTGQIEDHMAT----------LICAQLLFLEAENPQ-KEISLYINSPGGVVTAGMAIYDT 95
           ++GQ+E HM             I  QL+ +E ENPQ K + + +N+ GG V AG+A+ + 
Sbjct: 74  ISGQVEGHMVLPPQNKTTKYEHIIPQLVAVE-ENPQIKGLLVALNTVGGDVEAGLALAEM 132

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           +  +  P  +  +G   S+GS +  A      F  P+A + +H      +G    + +  
Sbjct: 133 IASLSKPTVSIVLGGGHSIGSTI--AVCTNYSFIAPSATMTIHPIR--LTGLVIGVPQTY 188

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
           + + K++ R+    V++   + E+  + +        D   ++   +A D G++D+V
Sbjct: 189 EYLDKMQDRVVRFVVEHSNISEEKFRELMFRMGDLARDIGTVLVGKDAVDCGLIDQV 245


>gi|148380363|ref|YP_001254904.1| Clp protease [Clostridium botulinum A str. ATCC 3502]
 gi|153932771|ref|YP_001384583.1| Clp protease [Clostridium botulinum A str. ATCC 19397]
 gi|153934679|ref|YP_001388099.1| Clp protease [Clostridium botulinum A str. Hall]
 gi|153941144|ref|YP_001391706.1| Clp protease [Clostridium botulinum F str. Langeland]
 gi|168180713|ref|ZP_02615377.1| clp protease [Clostridium botulinum NCTC 2916]
 gi|170759121|ref|YP_001787719.1| Clp protease [Clostridium botulinum A3 str. Loch Maree]
 gi|226949761|ref|YP_002804852.1| Clp protease family protein [Clostridium botulinum A2 str. Kyoto]
 gi|148289847|emb|CAL83955.1| translocation-enhancing protein TepA [Clostridium botulinum A str.
           ATCC 3502]
 gi|152928815|gb|ABS34315.1| Clp protease family protein [Clostridium botulinum A str. ATCC
           19397]
 gi|152930593|gb|ABS36092.1| Clp protease family protein [Clostridium botulinum A str. Hall]
 gi|152937040|gb|ABS42538.1| clp protease [Clostridium botulinum F str. Langeland]
 gi|169406110|gb|ACA54521.1| Clp protease family protein [Clostridium botulinum A3 str. Loch
           Maree]
 gi|182668575|gb|EDT80554.1| clp protease [Clostridium botulinum NCTC 2916]
 gi|226841950|gb|ACO84616.1| Clp protease family protein [Clostridium botulinum A2 str. Kyoto]
 gi|295319734|gb|ADG00112.1| clp protease [Clostridium botulinum F str. 230613]
 gi|322806674|emb|CBZ04243.1| translocation-enhancing protein TepA [Clostridium botulinum H04402
           065]
          Length = 230

 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 86/180 (47%), Gaps = 22/180 (12%)

Query: 43  RIVFVTGQIEDHM-------ATL---ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI 92
           +++ + GQIE HM       AT    +  QL+ LE     + + + +N+ GG V AG+AI
Sbjct: 31  QVLPIIGQIEGHMVLSPQTKATRYEHLIPQLIALETSKEVEGVFIILNTVGGDVEAGLAI 90

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIE 152
            + ++ +  P  +  +G   S+G  L ++ +    F  P A +++H      +G    + 
Sbjct: 91  AEMIRSLSKPTVSLVIGGGHSIGVPLATSAD--YSFISPTATMIVHPIR--MNGLIIGVP 146

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
           +  +   K++ R+ E  V+    + E++++ +        D   I+   +A + G++++V
Sbjct: 147 QTFEYFNKMQERIIEFIVRTSKISKEKLKEFMLQSDELLNDMGTILIGKQAVESGIINEV 206


>gi|193875742|gb|ACF24507.1| chloroplast ATP-dependent Clp protease proteolytic subunit 5
           [Gymnochlora stellata]
          Length = 183

 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 29/165 (17%), Positives = 76/165 (46%), Gaps = 3/165 (1%)

Query: 42  ERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP 101
           + I+F+   I++H++ +I +++ +L  ++    ++  INS GG +   + + + +  +  
Sbjct: 20  DNIIFIKSYIDNHISKIILSKVFYLVNQDITNNMNFLINSSGGDIKEILILLEYLDSLSL 79

Query: 102 PISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKI 161
             ++  +G+    GS  + A     R   PNA + +             +  ++ D+ ++
Sbjct: 80  MYTSVGLGKIIG-GSAFILATANNNRILYPNAILGMQIMKDNSVNNEETLVNYSNDLARL 138

Query: 162 KRRLNEIYVKNCGKT-YEEVEKTLDRDHIMSASEACDWGVVDKVL 205
               +  YV+   K  + ++ +   R+   +  EA   G++D+V+
Sbjct: 139 SLLFSR-YVRITKKAQFTKIIEKHQRNVYFTPKEALQLGIIDRVI 182


>gi|218689445|ref|YP_002397657.1| putative Clp protease [Escherichia coli ED1a]
 gi|218690202|ref|YP_002398414.1| putative Clp protease [Escherichia coli ED1a]
 gi|218427009|emb|CAR07883.2| putative Clp protease [Escherichia coli ED1a]
 gi|218427766|emb|CAR08677.2| putative Clp protease [Escherichia coli ED1a]
          Length = 178

 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 77/164 (46%), Gaps = 15/164 (9%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM 108
           GQ+++H  T +              E++++I+S GG   AG   Y+ ++ +   + T  +
Sbjct: 17  GQLQNHCLTAL---------SQGATELNIHISSQGGETAAGFTAYNFLKSLPVTVRTHNI 67

Query: 109 GQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER---HAQDIVKIKRRL 165
               S+ +++  AG +  RFA P +R LLH     F+  A+D  R   + + +     R 
Sbjct: 68  SNVESIANIVFLAGSE--RFANPLSRFLLHPLLWVFATPAADHARLREYGKCLDNDLDRF 125

Query: 166 NEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
            E +  + G T+      +    I+ A++A + G+++ +  +R+
Sbjct: 126 VETFNIDIG-THIRWASLIADSTILDANKALEHGIINSIKTARL 168


>gi|170754867|ref|YP_001781951.1| Clp protease [Clostridium botulinum B1 str. Okra]
 gi|169120079|gb|ACA43915.1| clp protease [Clostridium botulinum B1 str. Okra]
          Length = 230

 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 86/180 (47%), Gaps = 22/180 (12%)

Query: 43  RIVFVTGQIEDHM-------ATL---ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI 92
           +++ + GQIE HM       AT    +  QL+ LE     + + + +N+ GG V AG+AI
Sbjct: 31  QVLPIIGQIEGHMVLSPQTKATRYEHLIPQLIALETSKEVEGVFIILNTVGGDVEAGLAI 90

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIE 152
            + ++ +  P  +  +G   S+G  L ++ +    F  P A +++H      +G    + 
Sbjct: 91  AEMIRSLSKPTVSLVIGGGHSIGVPLATSAD--YSFISPTATMIVHPIR--MNGLIIGVP 146

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
           +  +   K++ R+ E  V+    + E++++ +        D   I+   +A + G++++V
Sbjct: 147 QTFEYFNKMQERIIEFIVRTSKISKEKLKEFMLQSDELLNDMGTILIGKQAVESGIINEV 206


>gi|85716877|ref|ZP_01047842.1| peptidase S14, ClpP [Nitrobacter sp. Nb-311A]
 gi|85696257|gb|EAQ34150.1| peptidase S14, ClpP [Nitrobacter sp. Nb-311A]
          Length = 283

 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 64/133 (48%), Gaps = 2/133 (1%)

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            ++I++ INSPGG +  G++IY+ ++     ++   +G AAS  S++  AG++ +R  L 
Sbjct: 75  NRDITVRINSPGGDMFEGISIYNMLRGHPAKVTIEVIGWAASAASIIAMAGDE-IRMGL- 132

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
              +++H   G   G   D+   A         + +IY    G     +EK +D +  M 
Sbjct: 133 GTFMMVHNAWGAVVGNRHDMRETADMFDGFDAAIADIYEARTGMKRASIEKLMDAETFMG 192

Query: 192 ASEACDWGVVDKV 204
            SEA   G  D V
Sbjct: 193 PSEAVKNGFADVV 205


>gi|265763489|ref|ZP_06092057.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263256097|gb|EEZ27443.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 423

 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 10/154 (6%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM 108
           G+I++        + L+++      +I + INS GG V  GM  +  +Q     + T   
Sbjct: 25  GKIDEESTRNFNDEFLWIQDYVKPSKIIISINSEGGSVLYGMGTFSIIQQCPIEVETIVE 84

Query: 109 GQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           G AASM S+L +AG +   +    + +++H P      + S    + Q +   ++++  I
Sbjct: 85  GLAASMASVLWAAGTRS--YMRDYSILMIHNPF--IRDEKSCNPDNEQIVNAFQKQIETI 140

Query: 169 YVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
           Y K  G T  +V        IM   E CD    D
Sbjct: 141 YHKRFGLTKAKVR------EIMDGKEGCDGTYFD 168


>gi|168184614|ref|ZP_02619278.1| Clp protease [Clostridium botulinum Bf]
 gi|182672304|gb|EDT84265.1| Clp protease [Clostridium botulinum Bf]
          Length = 226

 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 86/180 (47%), Gaps = 22/180 (12%)

Query: 43  RIVFVTGQIEDHM-------ATL---ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI 92
           +++ + GQIE HM       AT    +  QL+ LE     + + + +N+ GG V AG+AI
Sbjct: 31  QVLPIIGQIEGHMVLSPQTKATRYEHLIPQLIALETSKDVEGVFIILNTVGGDVEAGLAI 90

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIE 152
            + ++ +  P  +  +G   S+G  L ++ +    F  P A +++H      +G    + 
Sbjct: 91  AEMIRSLSKPTVSLVIGGGHSIGVPLATSAD--YSFISPTATMIVHPIR--MNGLIIGVP 146

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
           +  +   K++ R+ E  V+    + E++++ +        D   I+   +A + G++++V
Sbjct: 147 QTFEYFNKMQERIIEFIVRTSKISKEKLKEFMLQSDELLNDMGTILIGKQAVESGIINEV 206


>gi|167630902|ref|YP_001681401.1| peptidase s14, clpp [Heliobacterium modesticaldum Ice1]
 gi|167593642|gb|ABZ85390.1| peptidase s14, clpp [Heliobacterium modesticaldum Ice1]
          Length = 254

 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 78/165 (47%), Gaps = 4/165 (2%)

Query: 43  RIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           R +++ G I  E  +   +  +    E  + + +I+++INSPGG V A   IY+ +   K
Sbjct: 37  RTLYLDGPIAEESWLGDEVTPKQFKSELLSGEGDITIWINSPGGDVFAASQIYNMLMDYK 96

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
             ++    G AAS  S++  AG  G     P + I++H P+    G   ++E+    + +
Sbjct: 97  GKVTVKIDGIAASAASVIAMAG--GDVLMSPVSMIMIHNPATIAIGDTEEMEKAIAMLEE 154

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           IK  +   Y    G +  ++   +D +   +A +A + G  D +L
Sbjct: 155 IKESIINAYELKTGLSRAKISHLMDAESWFNARKAVELGFADGIL 199


>gi|150390425|ref|YP_001320474.1| peptidase S14, ClpP [Alkaliphilus metalliredigens QYMF]
 gi|149950287|gb|ABR48815.1| peptidase S14, ClpP [Alkaliphilus metalliredigens QYMF]
          Length = 254

 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 16/142 (11%)

Query: 43  RIVFVTGQIEDHMATL----------ICAQLLFLEAENPQKEISLYI-NSPGGVVTAGMA 91
            ++ + G IE HM             +  QL+ +E +NP  E  L I N+ GG V AG+A
Sbjct: 54  HVLTIIGHIEGHMVAPPQNKSTKYEHVIPQLMTVE-QNPNVEGMLVILNTAGGDVEAGLA 112

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           + + +  +  P  T  +G   S+G  L +AG+    F  P+A + +H      +G    +
Sbjct: 113 LSELINTLSKPTVTLVLGGGHSIGVPLATAGD--YSFIAPSATMTIHPIR--MTGLVIGV 168

Query: 152 ERHAQDIVKIKRRLNEIYVKNC 173
            +  Q   K++ R+ +  V N 
Sbjct: 169 PQTFQYFSKMQDRIIDFVVNNS 190


>gi|237795844|ref|YP_002863396.1| Clp protease family protein [Clostridium botulinum Ba4 str. 657]
 gi|229262404|gb|ACQ53437.1| Clp protease family protein [Clostridium botulinum Ba4 str. 657]
          Length = 226

 Score = 44.7 bits (104), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 86/180 (47%), Gaps = 22/180 (12%)

Query: 43  RIVFVTGQIEDHM-------ATL---ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI 92
           +++ + GQIE HM       AT    +  QL+ LE     + + + +N+ GG V AG+AI
Sbjct: 31  QVLPIIGQIEGHMVLSPQTKATRYEHLIPQLIALETSKDVEGVFIILNTVGGDVEAGLAI 90

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIE 152
            + ++ +  P  +  +G   S+G  L ++ +    F  P A +++H      +G    + 
Sbjct: 91  AEMIRSLSKPTVSLVIGGGHSIGVPLATSAD--YSFISPTATMIVHPIR--MNGLIIGVP 146

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
           +  +   K++ R+ E  V+    + E++++ +        D   I+   +A + G++++V
Sbjct: 147 QTFEYFNKMQERIIEFIVRTSKISKEKLKEFMLQSDELLNDMGTILIGKQAVESGIINEV 206


>gi|187778999|ref|ZP_02995472.1| hypothetical protein CLOSPO_02594 [Clostridium sporogenes ATCC
           15579]
 gi|187772624|gb|EDU36426.1| hypothetical protein CLOSPO_02594 [Clostridium sporogenes ATCC
           15579]
          Length = 231

 Score = 44.7 bits (104), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 86/180 (47%), Gaps = 22/180 (12%)

Query: 43  RIVFVTGQIEDHM-------ATL---ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI 92
           +++ + GQIE HM       AT    +  QL+ LE     + + + +N+ GG V AG+AI
Sbjct: 36  QVLPIIGQIEGHMVLSPQTKATRYEHLIPQLIALETSKEVEGVFIILNTVGGDVEAGLAI 95

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIE 152
            + ++ +  P  +  +G   S+G  L ++ +    F  P A +++H      +G    + 
Sbjct: 96  AEMIRSLSKPTVSLVIGGGHSIGVPLATSAD--YSFISPTATMIVHPIR--MNGLIIGVP 151

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
           +  +   K++ R+ E  V+    + E++++ +        D   I+   +A + G++++V
Sbjct: 152 QTFEYFNKMQERIIEFIVRTSKISKEKLKEFMLQSDELLNDMGTILIGKQAVESGIINEV 211


>gi|167758267|ref|ZP_02430394.1| hypothetical protein CLOSCI_00605 [Clostridium scindens ATCC 35704]
 gi|167664164|gb|EDS08294.1| hypothetical protein CLOSCI_00605 [Clostridium scindens ATCC 35704]
          Length = 241

 Score = 44.7 bits (104), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 87/182 (47%), Gaps = 26/182 (14%)

Query: 43  RIVFVTGQIEDHMATLICAQ------LLFLEAENPQKE----ISLYINSPGGVVTAGMAI 92
           +++ + G+IE H A     +      LL + AE    E    + + +N+ GG V AG++I
Sbjct: 41  KLLTIIGEIEGHEAVAGNTKATKYEHLLPMLAEVEDSEEIEGVLILLNTMGGDVEAGLSI 100

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH--QPSGGFSGQASD 150
            + +  +  P  +  +G + S+G  L  + +    F +P+  +++H  + +G F G    
Sbjct: 101 AEMIASLSKPTVSLVLGGSHSIGGPLAVSAK--YSFIVPSGTMIIHPVRSNGMFIG---- 154

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDHIMSASEACDWGVVD 202
           +E+  +++++ + R+     ++   T E +E+ +        D   ++   EA   G++D
Sbjct: 155 VEQSLRNMIRTQDRITRFLSQHSHMTQERIEELMLNPTELVKDVGTLLEGEEAVKEGLID 214

Query: 203 KV 204
           +V
Sbjct: 215 EV 216


>gi|225870213|ref|YP_002746160.1| phage ClpP protease [Streptococcus equi subsp. equi 4047]
 gi|225699617|emb|CAW93272.1| putative phage ClpP protease [Streptococcus equi subsp. equi 4047]
          Length = 221

 Score = 44.7 bits (104), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 68/133 (51%), Gaps = 3/133 (2%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I L +NS GG+VT G  IY  ++  K  ++    G AAS  S+ +   +K +    P A
Sbjct: 43  DIVLEVNSNGGLVTVGSEIYTALRNYKGKVTAEITGMAASAASVAVMGADKVVMS--PTA 100

Query: 134 RILLHQPSGGF-SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           ++++H+    + SG + D+++ +  +    + +   YV   G + + +   +  +  MSA
Sbjct: 101 QMMVHKALFKWVSGNSDDLDKASNALKSSDKAIVSAYVAKTGLSEDAIMDLMRNETFMSA 160

Query: 193 SEACDWGVVDKVL 205
            +A + G  D+V+
Sbjct: 161 QDAVEKGFADEVM 173


>gi|218889559|ref|YP_002438423.1| chaperone with DnaK; heat shock protein [Pseudomonas aeruginosa
           LESB58]
 gi|218769782|emb|CAW25542.1| chaperone with DnaK; heat shock protein [Pseudomonas aeruginosa
           LESB58]
          Length = 578

 Score = 44.7 bits (104), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 41/73 (56%)

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           NA +++H+P G   G+A D+ R+A  + KI+  +   Y+   GK+ E+++  L  +  M 
Sbjct: 11  NAMMMVHRPWGIQGGEADDMRRYADLLEKIEGTMVAAYMAKTGKSEEDIKALLKAETWMD 70

Query: 192 ASEACDWGVVDKV 204
             EA + G  D++
Sbjct: 71  GREAVEAGFADQL 83


>gi|217070634|gb|ACJ83677.1| unknown [Medicago truncatula]
          Length = 67

 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/42 (47%), Positives = 25/42 (59%)

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           G  T  +A+YD M++IKPPI T C+G A   GSL      KG
Sbjct: 26  GYETEALAVYDLMRYIKPPIFTLCVGNAWGRGSLTFGCWCKG 67


>gi|33600679|ref|NP_888239.1| phage-related Clp protease [Bordetella bronchiseptica RB50]
 gi|33568279|emb|CAE32191.1| phage-related Clp protease [Bordetella bronchiseptica RB50]
          Length = 291

 Score = 44.7 bits (104), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 69/133 (51%), Gaps = 2/133 (1%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           +++ +NSPGG +  G+AIY+ ++  +  ++   +G AAS  S++  AG+K  R       
Sbjct: 79  VTVNVNSPGGDMFEGLAIYNLLREHQGEVTVKVLGLAASAASIIAMAGDK--RQIARAGF 136

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           +++H       G   D+   A  +      + +IYV + G+   EV++ +D +  +  S+
Sbjct: 137 LMVHNCWVNAQGNRHDLREFADTMEPFDAAMADIYVASSGQDLGEVQRQMDGETWIGGSQ 196

Query: 195 ACDWGVVDKVLMS 207
           A + G  D++L S
Sbjct: 197 AIEQGYADELLPS 209


>gi|114331459|ref|YP_747681.1| peptidase S14, ClpP [Nitrosomonas eutropha C91]
 gi|114308473|gb|ABI59716.1| peptidase S14, ClpP [Nitrosomonas eutropha C91]
          Length = 228

 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 2/130 (1%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I L INSPGG V +  AI   ++     +     G AAS  S +  A +  +      A 
Sbjct: 45  IHLRINSPGGDVFSARAIETAIREHNSEVIAHIDGVAASAASYIALAADNIV--IAEGAF 102

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
            ++H+      G A D+   A  + K+   L   Y K  G+  +++   +  +   SA+E
Sbjct: 103 YMIHKAWSFAMGNADDLLEMAALLEKVDESLVTTYAKRTGQAEDQIRDWMRNETWFSAAE 162

Query: 195 ACDWGVVDKV 204
           A ++G  D V
Sbjct: 163 AVEYGFADSV 172


>gi|118442934|ref|YP_878200.1| ATP-dependent Clp protease proteolytic subunit [Clostridium novyi
           NT]
 gi|118133390|gb|ABK60434.1| ATP-dependent clp protease proteolytic subunit [Clostridium novyi
           NT]
          Length = 233

 Score = 44.3 bits (103), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 38/180 (21%), Positives = 81/180 (45%), Gaps = 22/180 (12%)

Query: 43  RIVFVTGQIEDHMATL----------ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI 92
           +++ + GQIE H A            +  QL+ +E  +  + + + +N+ GG V AG+AI
Sbjct: 36  QVLPIIGQIEGHSALPPQSKATKYEHLIPQLVDIETNDSIEGVLIILNTVGGDVEAGLAI 95

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIE 152
            + +  +  P  +  +G   S+G  L ++ +    F  P+A +++H      +G    + 
Sbjct: 96  AEMINSLSKPSVSLVIGGGHSIGVPLATSAD--YSFISPSATMIIHPIR--MNGLVLGVP 151

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
           +  +   K++ R+ +   +      E   K +        D   I+   +A D+G++D+V
Sbjct: 152 QTFEYFNKMQERIIDFITRTSKMKNETFRKLMLQTDDLLNDMGTILIGKQAVDYGLIDEV 211


>gi|238028274|ref|YP_002912505.1| hypothetical protein bglu_1g27310 [Burkholderia glumae BGR1]
 gi|237877468|gb|ACR29801.1| Hypothetical protein bglu_1g27310 [Burkholderia glumae BGR1]
          Length = 366

 Score = 44.3 bits (103), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 4/131 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I + +NS GG V     IY+ ++      +    G AAS  SLLL    +     +P NA
Sbjct: 54  IVVAVNSMGGDVFDAFTIYNLLRRYPGKTTGRVDGIAASAASLLLMGCSQ---IVMPSNA 110

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H P    +G   ++ R A  +      +   Y +  G+T ++V + +D +  ++A+
Sbjct: 111 MLMIHNPHTLAAGDEGELRRLADLLGSTSANMLTAYAERSGQTEDKVRELMDVETWLTAA 170

Query: 194 EACDWGVVDKV 204
           +A + G  D +
Sbjct: 171 QAVELGFCDAI 181


>gi|28210969|ref|NP_781913.1| ATP-dependent Clp protease proteolytic subunit [Clostridium tetani
           E88]
 gi|28203408|gb|AAO35850.1| ATP-dependent clp protease proteolytic subunit [Clostridium tetani
           E88]
          Length = 255

 Score = 44.3 bits (103), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 86/201 (42%), Gaps = 32/201 (15%)

Query: 22  VVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATL----------ICAQLLFLEAENP 71
           VVE     +R Y          I+ + GQ+E H A            +  QL+ ++ ++ 
Sbjct: 50  VVETPKPNDRIY----------ILPIIGQVEGHAAVPPQNKSTKYEHVIPQLVNIQMDDN 99

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            + + + +N+ GG V AG+AI + +  +  P  +  +G   S+G  L +A      F  P
Sbjct: 100 IEGVLVILNTVGGDVEAGLAIAEMIGSLGKPTVSLVIGGGHSIGVPLATA--SNYSFISP 157

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL------- 184
            A +++H      +G    + +  +   K++ R+ E  V+      E ++  +       
Sbjct: 158 TATMIIHPIR--MNGLILGVPQTFEYFDKMQDRIIEFIVRTSKMDKETIKDMMIKTDNLL 215

Query: 185 -DRDHIMSASEACDWGVVDKV 204
            D   I+   EA D G++D+V
Sbjct: 216 NDMGTILIGKEAVDCGLIDEV 236


>gi|296102063|ref|YP_003612209.1| putative protease [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295056522|gb|ADF61260.1| putative protease [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 550

 Score = 44.3 bits (103), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 39/72 (54%)

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++H+P G   G A+D+  +A  + K++  L   Y +  GK+ EE+   L+ +  MS SE 
Sbjct: 1   MIHKPWGFAGGDATDMRDYADLLDKVESVLIPAYAQKTGKSTEEIAAMLEDETWMSGSEC 60

Query: 196 CDWGVVDKVLMS 207
            + G  D+V  S
Sbjct: 61  LELGFADQVTPS 72


>gi|268610677|ref|ZP_06144404.1| peptidase s14, clpp [Ruminococcus flavefaciens FD-1]
          Length = 250

 Score = 44.3 bits (103), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 71/134 (52%), Gaps = 2/134 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           ++++++NSPGG V A   IY  ++  K  ++    G AAS  S++  AG++ +    P  
Sbjct: 49  DLTVWLNSPGGDVFAASQIYTMLRNHKGKVTVKIDGIAASAASVVAMAGDETL--IAPTG 106

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H PS    G    +++  + + ++K  +   Y +  G +  ++ + +D +  ++A 
Sbjct: 107 MLMIHNPSTVAFGNKEAMQKAIELLDEVKESIINAYEEKSGLSRSKIARMMDEETWLNAK 166

Query: 194 EACDWGVVDKVLMS 207
           +A   G+VD +L +
Sbjct: 167 KAQSLGLVDGILFA 180


>gi|330817608|ref|YP_004361313.1| hypothetical protein bgla_1g27400 [Burkholderia gladioli BSR3]
 gi|327370001|gb|AEA61357.1| hypothetical protein bgla_1g27400 [Burkholderia gladioli BSR3]
          Length = 366

 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 61/131 (46%), Gaps = 4/131 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NA 133
           I + +NS GG V     IY+ ++      +    G AAS  SLLL    +     +P NA
Sbjct: 54  IVVAVNSMGGDVFDAFTIYNLLRRYPGKTTGRVDGIAASAASLLLMGCSQ---IVMPSNA 110

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H P    +G   ++ R A  +      +   Y +  G+T + V + +D +  ++A+
Sbjct: 111 MLMIHNPHTLAAGDEGELRRLADLLGSTSANMLTAYAERSGQTEDTVRELMDAETWLTAA 170

Query: 194 EACDWGVVDKV 204
           +A + G  D +
Sbjct: 171 QAVELGFCDTI 181


>gi|268608938|ref|ZP_06142665.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ruminococcus
           flavefaciens FD-1]
          Length = 228

 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 76/174 (43%), Gaps = 22/174 (12%)

Query: 47  VTGQIEDHMATL----------ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           V GQIE H              I   L+ +E +   + + + +N+ GG V AG+AI + +
Sbjct: 35  VIGQIEGHYVLSEQNKTTKYEHIIPALVAVEQDRSVEGLLIILNTVGGDVEAGLAIAELI 94

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQ 156
             +K P  +  +G   S+G  L  + +K   F +P+A + +H      +G    + +   
Sbjct: 95  SGMKTPTVSLVVGGGHSIGVPLAVSAKK--SFIVPSASMTIHPVR--MNGTVLGVPQTLS 150

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEV--------EKTLDRDHIMSASEACDWGVVD 202
              +++ R+    V N G + E+         E  LD   ++   +A + G++D
Sbjct: 151 YFQRMQDRIVRFVVGNSGISEEDFRSLMMNTEELVLDVGSVVEGEKAVELGLID 204


>gi|257467083|ref|ZP_05631394.1| prophage LambdaBa02, Clp protease family protein [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315918215|ref|ZP_07914455.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313692090|gb|EFS28925.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 371

 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 16/139 (11%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQ-FIKP---PISTFCMGQAASMGSLLLSAGEK-----G 125
           I+L +NS GG V    AI++ ++ + K     I  +  G AAS  S L+    K     G
Sbjct: 55  INLRVNSGGGDVFEANAIFNLLKSYAKENNVEIIGYIDGLAASAASFLVLCAHKVIMGVG 114

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
             F       ++H P     G   ++ +    + KIK  + +IY      T +E+ + +D
Sbjct: 115 CLF-------MIHNPWTYTKGNVKELGQTIDFLNKIKESILDIYETKTKLTRQEISQKMD 167

Query: 186 RDHIMSASEACDWGVVDKV 204
            +   SASEA + G VD++
Sbjct: 168 EEKWFSASEALESGFVDEM 186


>gi|119473463|ref|ZP_01614970.1| ATP-dependent Clp protease proteolytic subunit [Alteromonadales
          bacterium TW-7]
 gi|119444459|gb|EAW25792.1| ATP-dependent Clp protease proteolytic subunit [Alteromonadales
          bacterium TW-7]
          Length = 32

 Score = 43.9 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/26 (76%), Positives = 21/26 (80%)

Query: 13 DVFLGLVPMVVEQTNRGERSYDIYSR 38
          D    LVPMVVEQT +GERSYDIYSR
Sbjct: 7  DPLNALVPMVVEQTPKGERSYDIYSR 32


>gi|290475060|ref|YP_003467944.1| ClpP protease [Xenorhabdus bovienii SS-2004]
 gi|289174377|emb|CBJ81171.1| ClpP protease [Xenorhabdus bovienii SS-2004]
          Length = 283

 Score = 43.9 bits (102), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 67/139 (48%), Gaps = 4/139 (2%)

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK-GMRFAL 130
            +++ + INSPGG V  G+AIY+ ++     ++   +G AAS  S++  AG++  M    
Sbjct: 72  DQDVIVNINSPGGDVFEGIAIYNLLRNHSGQVTVNVLGLAASAASVIAMAGDEINMGRG- 130

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
             A +++H       G  +++   A+ +      L +IY    G     + + +D +  +
Sbjct: 131 --AFLMIHNAWTCCCGNKNELVAVAEALRPFDDSLIDIYAARTGIDKASIAQMMDDETFI 188

Query: 191 SASEACDWGVVDKVLMSRI 209
           + +EA   G  D +L + +
Sbjct: 189 NHTEAIAQGFADGLLTADV 207


>gi|319939551|ref|ZP_08013911.1| hypothetical protein HMPREF9459_00899 [Streptococcus anginosus
           1_2_62CV]
 gi|319811537|gb|EFW07832.1| hypothetical protein HMPREF9459_00899 [Streptococcus anginosus
           1_2_62CV]
          Length = 227

 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 2/133 (1%)

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
           P + + + INS GG V     IY  ++  K  ++   +G AAS  S++  AG+  +    
Sbjct: 37  PSEPLEVRINSSGGDVYTANEIYAKLRGHKGKVTVKIVGLAASAASVIAMAGD--VIEMN 94

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           P A +++H  S    G +  ++R  + +      L   Y +  G   E++++ ++R+  +
Sbjct: 95  PIALMMIHNVSTLTYGNSQQLKRQIETMDVANDALATAYQERTGLAKEKIKEMMERETWL 154

Query: 191 SASEACDWGVVDK 203
           S   A   G  DK
Sbjct: 155 SCDTAISLGFADK 167


>gi|119383115|ref|YP_914171.1| peptidase S14, ClpP [Paracoccus denitrificans PD1222]
 gi|119383741|ref|YP_914797.1| peptidase S14, ClpP [Paracoccus denitrificans PD1222]
 gi|119372882|gb|ABL68475.1| peptidase S14, ClpP [Paracoccus denitrificans PD1222]
 gi|119373508|gb|ABL69101.1| peptidase S14, ClpP [Paracoccus denitrificans PD1222]
          Length = 280

 Score = 43.5 bits (101), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 65/138 (47%), Gaps = 6/138 (4%)

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM--RFA 129
           ++++ + INSPGG    G+AIY+T++     ++   +G AAS  S++  AG++ +  R  
Sbjct: 74  KRDVVVNINSPGGDFFEGLAIYNTLREHPAKVTVKILGLAASAASVIAMAGDEVLIGRAG 133

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
                +++H      +G    +   A  +        +IY    G   +++ + LDR+  
Sbjct: 134 F----LMIHNTWVVAAGDRHALREVADWLEPFDSASVDIYAARTGLDGKKLGQMLDRETW 189

Query: 190 MSASEACDWGVVDKVLMS 207
           +    A D G  D +L +
Sbjct: 190 IGGQSAVDQGFADSLLAA 207


>gi|327393420|dbj|BAK10842.1| putative peptidase S14 ClpP [Pantoea ananatis AJ13355]
          Length = 282

 Score = 43.5 bits (101), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 71/132 (53%), Gaps = 2/132 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           ++++ INSPGG +  G+AIY+ ++  +  ++   +G AAS  S++  AG+  ++     A
Sbjct: 75  DVTVNINSPGGDMFEGLAIYNLLREYEGKVTVKVLGLAASAASIIAMAGDD-IQIGR-GA 132

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H       G   D+ + A D+    + + +IY    G + E++ + +D +  +  S
Sbjct: 133 FLMIHNCWVYAMGNRHDLSQIAADMEPFDKAMGDIYSYRSGLSAEDIAEMMDGETYIGGS 192

Query: 194 EACDWGVVDKVL 205
           +A D G  D++L
Sbjct: 193 DAVDKGFADRLL 204


>gi|325662072|ref|ZP_08150691.1| hypothetical protein HMPREF0490_01429 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471735|gb|EGC74954.1| hypothetical protein HMPREF0490_01429 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 275

 Score = 43.5 bits (101), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 66/132 (50%), Gaps = 2/132 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I+++INSPGG   A   IY+ +   K  ++    G AAS  S++  AG        P +
Sbjct: 59  DITVWINSPGGDCVAAAQIYNMLANYKGNVTVKIDGIAASAASVIAMAG--STVLMSPVS 116

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H P+    G  +++E+  + +  +K  +   Y    G +  ++ + +D +  M A+
Sbjct: 117 MMMIHNPATFAFGDHAEMEKAIEMLDGVKDSIINAYTLKTGMSRAKLSRLMDAETWMDAT 176

Query: 194 EACDWGVVDKVL 205
           +A + G  D ++
Sbjct: 177 KAVELGFADNII 188


>gi|315656915|ref|ZP_07909802.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315492870|gb|EFU82474.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 292

 Score = 43.5 bits (101), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 6/171 (3%)

Query: 43  RIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           R++ ++G I  E      I   +   E       + +++NSPGG V A   IY+ +  I 
Sbjct: 23  RVLHISGTIAEESWFDDDITPSIFAAELNAGSGPVKIWLNSPGGDVVAAAQIYNML--ID 80

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFAL-PNARILLHQPSGGFSGQASDIERHAQDIV 159
            P  T  +       S          + A+ P + +++H P+    G   ++ R    + 
Sbjct: 81  YP-GTVTVNIDGIAASAASVIAMAATKVAMSPVSMLMIHNPATMAVGDKDELARAMNMLD 139

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
            +K  +   Y +  G +  ++ K +D +  M A  A D G  D++L ++ D
Sbjct: 140 SVKESILNAYQEKTGMSRAKLSKLMDAETWMDARAAIDMGFADELLTNQRD 190


>gi|148257821|ref|YP_001242406.1| putative peptidase S14, ClpP [Bradyrhizobium sp. BTAi1]
 gi|146409994|gb|ABQ38500.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bradyrhizobium
           sp. BTAi1]
          Length = 684

 Score = 43.5 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 42/131 (32%), Positives = 62/131 (47%), Gaps = 4/131 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK-GMRFALPN 132
           + ++ INS GG+ T GMAIY  ++     I+    G AAS  SL+  AG++  MR     
Sbjct: 45  DATVRINSGGGIATEGMAIYSLLKAHPGKITVAIDGIAASAASLIAMAGDEIEMR---TG 101

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A +++H PSG   G A   E  A  + K+      +Y    G   +EV K +     ++A
Sbjct: 102 AMMMIHDPSGYTRGPAKVHEDAAAFLHKLADNYASVYAIRAGMDAKEVRKLMLATTWLTA 161

Query: 193 SEACDWGVVDK 203
            EA   G   K
Sbjct: 162 GEAVTQGFATK 172


>gi|168490153|ref|ZP_02714352.1| peptidase S14, ClpP [Streptococcus pneumoniae SP195]
 gi|168494827|ref|ZP_02718970.1| peptidase S14, ClpP [Streptococcus pneumoniae CDC3059-06]
 gi|168494909|ref|ZP_02719052.1| peptidase S14, ClpP [Streptococcus pneumoniae CDC3059-06]
 gi|168494962|ref|ZP_02719105.1| peptidase S14, ClpP [Streptococcus pneumoniae CDC3059-06]
 gi|168494989|ref|ZP_02719132.1| peptidase S14, ClpP [Streptococcus pneumoniae CDC3059-06]
 gi|183571470|gb|EDT91998.1| peptidase S14, ClpP [Streptococcus pneumoniae SP195]
 gi|183575135|gb|EDT95663.1| peptidase S14, ClpP [Streptococcus pneumoniae CDC3059-06]
 gi|183575170|gb|EDT95698.1| peptidase S14, ClpP [Streptococcus pneumoniae CDC3059-06]
 gi|183575218|gb|EDT95746.1| peptidase S14, ClpP [Streptococcus pneumoniae CDC3059-06]
 gi|183575291|gb|EDT95819.1| peptidase S14, ClpP [Streptococcus pneumoniae CDC3059-06]
          Length = 240

 Score = 43.5 bits (101), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 67/134 (50%), Gaps = 2/134 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           +++ ++INS GG V AG  IY  ++  +  ++   +G AAS  S++  AG++ +  + P 
Sbjct: 39  EDVEVHINSGGGDVYAGSEIYTALRAYQGHVTVKIVGIAASAASVIAMAGDQ-VEIS-PT 96

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A+I++H  S G  G    +   A  +    + +   Y+   GK  +++   ++ +    A
Sbjct: 97  AQIMIHNVSAGVRGDHKALLHEAGVLEGFNKSIAYAYIDKTGKALDDLLDLMEGETWFDA 156

Query: 193 SEACDWGVVDKVLM 206
             A + G  DKV+ 
Sbjct: 157 RSAVNHGFADKVMF 170


>gi|315221880|ref|ZP_07863792.1| Clp protease [Streptococcus anginosus F0211]
 gi|315189113|gb|EFU22816.1| Clp protease [Streptococcus anginosus F0211]
          Length = 227

 Score = 43.5 bits (101), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 2/133 (1%)

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
           P + + + INS GG V     IY  ++  K  ++   +G AAS  S++  AG+  +    
Sbjct: 37  PSEPLEVRINSSGGDVYTANEIYAKLRGHKGKVTVKIVGLAASAASVIAMAGD--VIEMN 94

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           P A +++H  S    G +  ++R  + +      L   Y +  G   E++++ ++R+  +
Sbjct: 95  PIALMMIHNVSTLTYGNSQQLKRQIETMDVANDALATAYQERTGLAKEKIKEMMERETWL 154

Query: 191 SASEACDWGVVDK 203
           S   A   G  DK
Sbjct: 155 SCDTAISLGFADK 167


>gi|327439480|dbj|BAK15845.1| protease subunit of ATP-dependent Clp protease [Solibacillus
           silvestris StLB046]
          Length = 245

 Score = 43.5 bits (101), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 66/126 (52%), Gaps = 2/126 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I + +NSPGG    G+AIY+ ++     ++    G A S  S++  AG++ +      A
Sbjct: 67  DIVVRLNSPGGSAFDGIAIYNRLKEHPGKVTIHVDGWACSAASIIAMAGDEVIMGT--GA 124

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H+ S    G  +D+ + A  + +++  + ++Y+     + EE+ + ++ +   SA 
Sbjct: 125 MMMIHEASNIVWGTKNDMRKVADMLEELEAGIVDVYMTKAKISREEITEQMNAETWFSAL 184

Query: 194 EACDWG 199
           +A + G
Sbjct: 185 KAVEIG 190


>gi|75675735|ref|YP_318156.1| peptidase S14, ClpP [Nitrobacter winogradskyi Nb-255]
 gi|74420605|gb|ABA04804.1| peptidase S14, ClpP [Nitrobacter winogradskyi Nb-255]
          Length = 281

 Score = 43.1 bits (100), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 2/132 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           +++++ INSPGG +  G+AIY+ ++     ++   +G AAS  S++  AG++ +R  L  
Sbjct: 76  RDVTVKINSPGGDMFEGIAIYNLLRGHPARVTVEVLGWAASAASIIAMAGDE-IRMGL-G 133

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
             +++H   G   G   D+   A+        + +IY    G     +EK +D +  M  
Sbjct: 134 TFMMVHNAWGVVIGNRHDMRESAELFDGFDSAIVDIYEARTGLKRSAIEKLMDAETFMGP 193

Query: 193 SEACDWGVVDKV 204
           SEA   G  D V
Sbjct: 194 SEAVKNGFADLV 205


>gi|326692818|ref|ZP_08229823.1| protease subunit of ATP-dependent Clp protease [Leuconostoc
           argentinum KCTC 3773]
          Length = 240

 Score = 43.1 bits (100), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 2/131 (1%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           + + I S GG V +   IY  ++  K  ++    G AAS  S++  AG K +  + P A+
Sbjct: 46  VEVNIASNGGDVFSASEIYTMLRQSKANVTVNIQGLAASAASVIAMAGNK-VNIS-PTAQ 103

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           +++HQ S    G   D+      +  I + +   Y    G    ++   + ++  + A E
Sbjct: 104 LMIHQASSYGGGNKDDLAHEINVLDGIDKSIASAYESKTGMPQGDLLNMMAQETWIGAQE 163

Query: 195 ACDWGVVDKVL 205
           A D G  D+++
Sbjct: 164 AVDKGFADEIM 174


>gi|313768170|ref|YP_004061601.1| hypothetical protein BpV1_171c [Bathycoccus sp. RCC1105 virus BpV1]
 gi|312599777|gb|ADQ91798.1| hypothetical protein BpV1_171c [Bathycoccus sp. RCC1105 virus BpV1]
          Length = 191

 Score = 43.1 bits (100), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 30/129 (23%), Positives = 60/129 (46%), Gaps = 3/129 (2%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L++ S GG + AG++  + ++  +  + T   G   S  + LL  G +  R    NA +L
Sbjct: 64  LHVCSEGGDLFAGISAMNIIEKSRVKVVTIAQGVCCSAATFLLLGGHE--RRIGKNAHVL 121

Query: 137 LHQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQ S  GF G+  +++   +   K+   + + Y +      ++ +K + RD  +   E 
Sbjct: 122 IHQISTNGFWGKYEELKDEMKSCDKLMDMVTKTYKEKTTIPQKQFKKIMKRDMYLDPQEC 181

Query: 196 CDWGVVDKV 204
             + VV  +
Sbjct: 182 IKYNVVHSI 190


>gi|1168975|sp|P42379|CLPP_CHLMO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp; Contains: RecName:
           Full=Ceu clpP intein; AltName: Full=Insertion IS2
 gi|575471|gb|AAA84150.1| clpP subunit of Clp protease [Chlamydomonas moewusii]
          Length = 1010

 Score = 43.1 bits (100), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 39/64 (60%)

Query: 146 GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           GQASDI   +Q+I+KI+  + EIY     +   ++ + LDRD  ++A+E   +G+ D++ 
Sbjct: 908 GQASDIWIDSQEIMKIRLDVAEIYSLATYRPRHKILRDLDRDFYLTATETIHYGLADEIA 967

Query: 206 MSRI 209
            + +
Sbjct: 968 SNEV 971



 Score = 42.0 bits (97), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 2/80 (2%)

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           A+  F E E+  K++ + INS GG V  G+ ++D +QFIK    T  +G AAS  SL L+
Sbjct: 369 AERAFQEEES--KKVFVIINSFGGSVGNGITVHDALQFIKAGSLTLALGVAASAASLALA 426

Query: 121 AGEKGMRFALPNARILLHQP 140
            G  G R+      +++HQP
Sbjct: 427 GGTIGERYVTEGCHVMIHQP 446


>gi|156933216|ref|YP_001437132.1| hypothetical protein ESA_01027 [Cronobacter sakazakii ATCC BAA-894]
 gi|156531470|gb|ABU76296.1| hypothetical protein ESA_01027 [Cronobacter sakazakii ATCC BAA-894]
          Length = 284

 Score = 43.1 bits (100), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 70/132 (53%), Gaps = 2/132 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           ++++ INSPGG +  G+AIY+ ++     ++   +G AAS  S++  AG++ ++     A
Sbjct: 75  DVTVNINSPGGDMFEGLAIYNLLREYDGKVTVKVLGLAASAASIIAMAGDE-VQIGR-GA 132

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H       G   D+ + A D+    + +++IY    G   E V++ +D +  +  S
Sbjct: 133 FLMIHNCWVYAMGNRHDLAQIAADMAPFDKAMSDIYQARSGLDAETVDRMMDGETYIGGS 192

Query: 194 EACDWGVVDKVL 205
           EA + G  D +L
Sbjct: 193 EAVEKGFADSLL 204


>gi|156619231|gb|ABU88294.1| clp protease proteolytic subunit 2 [Chlamydomonas moewusii]
          Length = 1010

 Score = 43.1 bits (100), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 39/64 (60%)

Query: 146 GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           GQASDI   +Q+I+KI+  + EIY     +   ++ + LDRD  ++A+E   +G+ D++ 
Sbjct: 908 GQASDIWIDSQEIMKIRLDVAEIYSLATYRPRHKILRDLDRDFYLTATETIHYGLADEIA 967

Query: 206 MSRI 209
            + +
Sbjct: 968 SNEV 971



 Score = 42.0 bits (97), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 2/80 (2%)

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           A+  F E E+  K++ + INS GG V  G+ ++D +QFIK    T  +G AAS  SL L+
Sbjct: 369 AERAFQEEES--KKVFVIINSFGGSVGNGITVHDALQFIKAGSLTLALGVAASAASLALA 426

Query: 121 AGEKGMRFALPNARILLHQP 140
            G  G R+      +++HQP
Sbjct: 427 GGTIGERYVTEGCHVMIHQP 446


>gi|254304018|ref|ZP_04971376.1| endopeptidase Clp [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
 gi|148324210|gb|EDK89460.1| endopeptidase Clp [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
          Length = 236

 Score = 43.1 bits (100), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 81/172 (47%), Gaps = 23/172 (13%)

Query: 65  FLEAENPQ-------------KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQA 111
           F + ENP               E+ ++INS GG V AG+AI + ++  K     +  G +
Sbjct: 35  FFDLENPNVYPLDVANALKEAGEVHVHINSYGGDVFAGVAISNMLKNHKGKTIAYVDGLS 94

Query: 112 ASMGSLLLSAGEKGMRFALP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYV 170
           AS  S +++ G K     +P NA +++H+ S G  G A D  +  + + KI+  +   Y+
Sbjct: 95  ASSAS-IIAFGCK--EIVIPDNAYLMIHRVSCGMFGNADDFLKQIEVMEKIEDGIINTYM 151

Query: 171 KNC--GKTYEEVEKTLDRDHIMSASEACDWGVV----DKVLMSRIDIEEKSK 216
           +    G T E++   +  +   +  +  ++  +      + ++++D ++K K
Sbjct: 152 EKAIEGVTREQIYDLMKSETWFTGKDCLNYFNIKVDNSPIYLNKVDTKQKYK 203


>gi|331269619|ref|YP_004396111.1| peptidase S14, ClpP [Clostridium botulinum BKT015925]
 gi|329126169|gb|AEB76114.1| peptidase S14, ClpP [Clostridium botulinum BKT015925]
          Length = 231

 Score = 43.1 bits (100), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 93/200 (46%), Gaps = 31/200 (15%)

Query: 43  RIVFVTGQIEDHMATL----------ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI 92
           +++ + GQIE H              +  QL+ +E  +  + + + +N+ GG V AG+AI
Sbjct: 34  QVLPIIGQIEGHSVLPPQSKATKYEHVIPQLVDIEMNDDIEGVLIILNTVGGDVEAGLAI 93

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIE 152
            + +  +  P  +  +G   S+G  L +  +    F  P+A +++H      +G    + 
Sbjct: 94  AEMISSLSKPSVSLVIGGGHSIGVPLATCAD--YSFISPSATMIVHPIR--MNGLVLGVP 149

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL---------DRDHIMSASEACDWGVVDK 203
           +  +   K++ R+ + ++K   K  ++  ++L         D   I+   +A D+G++D+
Sbjct: 150 QTFEYFNKMQERIID-FIKRTSKINKDTLRSLMLQTDELLNDMGTILIGKQAVDYGLIDE 208

Query: 204 V--LMSRID-----IEEKSK 216
           V  L S I+     I+ KSK
Sbjct: 209 VGGLSSAINKLEEIIDSKSK 228


>gi|224826601|ref|ZP_03699702.1| peptidase S14 ClpP [Lutiella nitroferrum 2002]
 gi|224601202|gb|EEG07384.1| peptidase S14 ClpP [Lutiella nitroferrum 2002]
          Length = 217

 Score = 42.7 bits (99), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 79/162 (48%), Gaps = 16/162 (9%)

Query: 28  RGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF-LEAENPQKEISLYINSPGGVV 86
           +G   Y+I S+L  E   ++ G+I+   A+     L + L + +    I L++N+ GG  
Sbjct: 23  QGLSRYEIRSQL-SEISFYLCGEIQ---ASHFYTNLFYTLRSASETDIIYLHLNTTGGDF 78

Query: 87  TAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG 146
             GM I + MQ     + T    +A SMG+L+  AG++       N +++ H  SG F+G
Sbjct: 79  DTGMQIINNMQSSCAHVITVLEARAYSMGALIFLAGDELE--VQDNCQLMFHIYSGTFAG 136

Query: 147 QASDIERHAQDIV----KIKRRLNEIYVKNCGKTYEEVEKTL 184
           + ++ +   Q +     K+ +R+ + ++        EV+K L
Sbjct: 137 RGTEQQAQIQAVSSWFEKVMQRICQPFLSTA-----EVDKVL 173


>gi|168187899|ref|ZP_02622534.1| Clp protease [Clostridium botulinum C str. Eklund]
 gi|169294242|gb|EDS76375.1| Clp protease [Clostridium botulinum C str. Eklund]
          Length = 232

 Score = 42.7 bits (99), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 38/181 (20%), Positives = 83/181 (45%), Gaps = 24/181 (13%)

Query: 43  RIVFVTGQIEDHMATL----------ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI 92
           +++ + GQIE H              +  QL+ +E  +  + + + +N+ GG V AG+AI
Sbjct: 36  QVLPIIGQIEGHSVLPPQSKATKYEHLIPQLVDIETNDAIEGVLIILNTVGGDVEAGLAI 95

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIE 152
            + +  +  P  +  +G   S+G  L ++ +    F  P+A +++H      +G    + 
Sbjct: 96  AEMINSLSKPSVSLVIGGGHSIGVPLATSAD--YSFISPSATMIIHPIR--MNGLVLGVP 151

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL---------DRDHIMSASEACDWGVVDK 203
           +  +   K++ R+ + ++    K   E  ++L         D   I+   +A D+G++D+
Sbjct: 152 QTFEYFNKMQERIID-FITRTSKMKNETFRSLMLQTDELLNDMGTILIGKQAVDYGLIDE 210

Query: 204 V 204
           V
Sbjct: 211 V 211


>gi|221133367|ref|ZP_03559672.1| hypothetical protein GHTCC_00435 [Glaciecola sp. HTCC2999]
          Length = 201

 Score = 42.7 bits (99), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 74/184 (40%), Gaps = 34/184 (18%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP+++++ N                  F+TG I++    L       L        I L+
Sbjct: 22  VPIIIDKNNNTH--------------AFITGSIDE--PKLYNELCFILHTAEIDTTIILH 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           IN+PGG++ +   I D +   K  +     G  AS G+++  A          +   ++H
Sbjct: 66  INTPGGIIDSAFMIVDAIHHSKAKVIGKLSGTVASAGTIIAMACHD--LEVSEHLSFMIH 123

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTY-------EEVEKTLD-RDHIM 190
             SGG +G+  ++        K ++R  ++++    K++       EE+   +D  D  M
Sbjct: 124 NYSGGMAGKGHEM--------KARQRFTDLHLNEAFKSFYHGFLTSEEMNSVIDGTDLWM 175

Query: 191 SASE 194
             SE
Sbjct: 176 GTSE 179


>gi|291545835|emb|CBL18943.1| Protease subunit of ATP-dependent Clp proteases [Ruminococcus sp.
           SR1/5]
          Length = 237

 Score = 42.7 bits (99), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 89/196 (45%), Gaps = 26/196 (13%)

Query: 29  GERSYDIYSRLLKERIVFVTGQIEDHMAT----------LICAQLLFLEAENPQKEISLY 78
           G+   D  SR  K  ++ V G+IE H +            +  +L  +E +   + + + 
Sbjct: 27  GQAVLDGNSRKHKVELLTVIGEIEGHESAPSHSKTTKYEHVLPKLALIEDDEEIEGLLIL 86

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           +N+ GG V AG+AI + +  +  P  +  +G   S+G  +  + +    F +P+A +++H
Sbjct: 87  LNTVGGDVEAGLAIAEMIASLSIPTVSLVLGGGHSIGVPMAVSAD--YSFIVPSATMVVH 144

Query: 139 --QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDH 188
             + +G F G A       +++ KI+ R+      +   T E +E+ +        D   
Sbjct: 145 PVRQNGMFIGVAQSY----RNMEKIQDRIIAFVSGHSHITAERMEELMLDTSQLVKDVGT 200

Query: 189 IMSASEACDWGVVDKV 204
           ++   EA   G++D+V
Sbjct: 201 MLEGEEAVKEGLIDEV 216


>gi|224025320|ref|ZP_03643686.1| hypothetical protein BACCOPRO_02059 [Bacteroides coprophilus DSM
           18228]
 gi|237711831|ref|ZP_04542312.1| predicted protein [Bacteroides sp. 9_1_42FAA]
 gi|317475026|ref|ZP_07934295.1| hypothetical protein HMPREF1016_01274 [Bacteroides eggerthii
           1_2_48FAA]
 gi|224018556|gb|EEF76554.1| hypothetical protein BACCOPRO_02059 [Bacteroides coprophilus DSM
           18228]
 gi|229454526|gb|EEO60247.1| predicted protein [Bacteroides sp. 9_1_42FAA]
 gi|316908929|gb|EFV30614.1| hypothetical protein HMPREF1016_01274 [Bacteroides eggerthii
           1_2_48FAA]
          Length = 412

 Score = 42.7 bits (99), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 18/143 (12%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM 108
           G++ +   +    +  FLE       I + INS GG V  GM+ Y T+      + T C+
Sbjct: 25  GRVTEETTSRFNDEFDFLENIIRPSCIRVLINSEGGSVLYGMSTYSTIA--NATVDTECI 82

Query: 109 --GQAASMGSLLLSAGEKG-MR-FALPNARILLHQP--SGGFSGQASDIERHAQDIVKIK 162
             G AASM S++ +AG++  MR +A+    +++H P       G+ SD+      +    
Sbjct: 83  IEGVAASMASIIWAAGKRSLMRDYAI----LMIHNPMLPDDDGGEPSDM------VTAFT 132

Query: 163 RRLNEIYVKNCGKTYEEVEKTLD 185
           +++  IY K  G   E V   +D
Sbjct: 133 KQIETIYRKRFGLKAEHVRAIMD 155


>gi|83641941|emb|CAJ46674.1| ATP-dependent Clp protease proteolytic subunit [Nicotiana
           glutinosa]
          Length = 66

 Score = 42.7 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 36/61 (59%)

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
           +  Q  +    A++++K++  L  +YV+  GK    V + ++RD  MSA+EA  +G+VD 
Sbjct: 3   YEAQTGEFVLEAEELLKLRETLTRVYVQRTGKPLWVVSEDMERDVFMSATEAQAYGIVDL 62

Query: 204 V 204
           V
Sbjct: 63  V 63


>gi|268611147|ref|ZP_06144874.1| ATP-dependent Clp protease, proteolytic subunit ClpP, putative
           [Ruminococcus flavefaciens FD-1]
          Length = 306

 Score = 42.7 bits (99), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 66/133 (49%), Gaps = 2/133 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +++L+INSPGG V A   IY TM    P   T  +   A+  + +++     ++ + P A
Sbjct: 48  DLTLWINSPGGNVFAAAEIY-TMIRDYPHNVTVRIASIAASAASVIAMAGNTVQMS-PTA 105

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            ++++ PS    G A D+E+    + ++K  +   Y    G +   + K +  +  ++A 
Sbjct: 106 LLMINDPSTIAFGNAKDMEKAIATLNEVKESIINAYAAKTGLSRNRISKLMSDETWINAK 165

Query: 194 EACDWGVVDKVLM 206
           +A + G  D++L 
Sbjct: 166 KAVELGFADEILF 178


>gi|218901725|ref|YP_002449559.1| Clp protease [Bacillus cereus AH820]
 gi|218538595|gb|ACK90993.1| Clp protease [Bacillus cereus AH820]
          Length = 247

 Score = 42.7 bits (99), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 4/133 (3%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP- 131
           K I+++INS GG V   +AI + ++     I     G AAS  S++  A +K     +P 
Sbjct: 56  KTINVHINSGGGDVFESIAISNLLKNHSATIVVHIDGLAASGASVIAMAADK---IVMPK 112

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N  +++H+     +G A  + + A  + KI   + E Y         E+E  L  +  ++
Sbjct: 113 NTMMMIHKAWTYAAGNAEGLRKVADRLDKIDNAVTESYTSRFVGEKSELESLLAEETWLT 172

Query: 192 ASEACDWGVVDKV 204
           A E   +G  D++
Sbjct: 173 AEECKTFGFCDEI 185


>gi|297585273|ref|YP_003701053.1| peptidase S14 ClpP [Bacillus selenitireducens MLS10]
 gi|297143730|gb|ADI00488.1| peptidase S14 ClpP [Bacillus selenitireducens MLS10]
          Length = 226

 Score = 42.7 bits (99), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 67/134 (50%), Gaps = 2/134 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I+++INSPGG V A   IY+ +      ++    G AAS  S++  AG K +    P +
Sbjct: 47  DITVWINSPGGDVFAASQIYNMLMEYPGQVTVKIDGVAASAASVIAMAGTKVL--MGPTS 104

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H P     G +++++R  + + ++K  +   Y          + K +D +   +A 
Sbjct: 105 LMMIHNPMTMAIGDSTEMKRAMEMLREVKESIMNAYELRTELPRNRLAKLMDDESWFNAK 164

Query: 194 EACDWGVVDKVLMS 207
           +A + G  D+VL +
Sbjct: 165 KAVELGFADEVLFT 178


>gi|297583106|ref|YP_003698886.1| peptidase S14 ClpP [Bacillus selenitireducens MLS10]
 gi|297141563|gb|ADH98320.1| peptidase S14 ClpP [Bacillus selenitireducens MLS10]
          Length = 226

 Score = 42.7 bits (99), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 67/134 (50%), Gaps = 2/134 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I+++INSPGG V A   IY+ +      ++    G AAS  S++  AG K +    P +
Sbjct: 47  DITVWINSPGGDVFAASQIYNMLMEYPGQVTVKIDGVAASAASVIAMAGTKVL--MSPVS 104

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H P     G +S+++R  + + ++K  +   Y          + K +D +   +A 
Sbjct: 105 MMMIHNPMTMAIGDSSEMKRAMEMLREVKESIMNAYELRTELPRTRLAKLMDDESWFNAK 164

Query: 194 EACDWGVVDKVLMS 207
           +A + G  D+VL +
Sbjct: 165 KAVELGFADEVLFT 178


>gi|225076698|ref|ZP_03719897.1| hypothetical protein NEIFLAOT_01749 [Neisseria flavescens
           NRL30031/H210]
 gi|224951974|gb|EEG33183.1| hypothetical protein NEIFLAOT_01749 [Neisseria flavescens
           NRL30031/H210]
          Length = 281

 Score = 42.4 bits (98), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 66/141 (46%), Gaps = 6/141 (4%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           KE+ + INSPGG    G++IY+ +      ++   +G AAS  S++  AG++ +      
Sbjct: 75  KEVVVNINSPGGDYFEGISIYNLLAQHPAKVTVQIVGLAASAASVIAMAGDEILMG--EG 132

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           + +++H       G   D+      + +I   + ++Y      +  E+   +DR+  +  
Sbjct: 133 SFLMIHNAWSLAIGNRHDLAGSIDTLSQIDDAMADLYAARSSLSKAEIVGMMDRESWIGK 192

Query: 193 SEACDWGVVDKVLMSRIDIEE 213
           S+A + G  D      ID++E
Sbjct: 193 SKALEDGFAD----GEIDVKE 209


>gi|218660307|ref|ZP_03516237.1| hypothetical protein RetlI_12159 [Rhizobium etli IE4771]
          Length = 19

 Score = 42.4 bits (98), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 19/19 (100%), Positives = 19/19 (100%)

Query: 21 MVVEQTNRGERSYDIYSRL 39
          MVVEQTNRGERSYDIYSRL
Sbjct: 1  MVVEQTNRGERSYDIYSRL 19


>gi|169829216|ref|YP_001699374.1| phage protein [Lysinibacillus sphaericus C3-41]
 gi|168993704|gb|ACA41244.1| phage protein [Lysinibacillus sphaericus C3-41]
          Length = 355

 Score = 42.4 bits (98), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 70/138 (50%), Gaps = 2/138 (1%)

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           N +KE+ + INSPGG V A   I+  ++   P  S   +    +  + +++   K +  A
Sbjct: 42  NQEKELVVNINSPGGSVYAASEIWTHIKKY-PGNSVSEISGVCASAASIIALASKKVVIA 100

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
            P   +++H  S    G   ++E   Q +++    + + Y +   K+ EE+++ +D +  
Sbjct: 101 -PVGALMIHNASVIAEGDYREMESMKQLLIQTNDAIMQTYKEKTKKSDEELKQMMDAETW 159

Query: 190 MSASEACDWGVVDKVLMS 207
           M+A +A + G VD+++ +
Sbjct: 160 MNAQQAVENGFVDEIMFA 177


>gi|300717741|ref|YP_003742544.1| Clp protease [Erwinia billingiae Eb661]
 gi|299063577|emb|CAX60697.1| Clp protease [Erwinia billingiae Eb661]
          Length = 180

 Score = 42.4 bits (98), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 2/87 (2%)

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           N    ++++I+S GG + +G   Y  ++ +  P+ T  +    S+ +++  AG +  R  
Sbjct: 29  NGATSLNVHISSGGGDLISGFTAYHFLKSLSIPVITHNISNVESVANIIFMAGSE--RRT 86

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQ 156
            P +R LLH    GFS  A+D  R A+
Sbjct: 87  NPGSRFLLHPLHWGFSTPAADHARIAE 113


>gi|307687451|ref|ZP_07629897.1| peptidase S14 ClpP [Clostridium cellulovorans 743B]
          Length = 202

 Score = 42.4 bits (98), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 65/129 (50%), Gaps = 2/129 (1%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           ++INSPGG   A   IY+ +   K  ++    G AAS  S++  AG++ +    P + ++
Sbjct: 1   MWINSPGGDCVAAAQIYNMLSNYKGKVTVKIDGIAASAASVIAMAGKEVLMS--PVSMLM 58

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +H P     G  +++++    + ++K  +   YV   G +  ++   +D +  M+A++A 
Sbjct: 59  IHNPMTIAMGDHAEMQKAIDMLAEVKESIINAYVLKTGLSRAKLSHLMDSETWMNANKAV 118

Query: 197 DWGVVDKVL 205
           + G  D  L
Sbjct: 119 ELGFADGTL 127


>gi|254519174|ref|ZP_05131230.1| peptidase S14 [Clostridium sp. 7_2_43FAA]
 gi|226912923|gb|EEH98124.1| peptidase S14 [Clostridium sp. 7_2_43FAA]
          Length = 246

 Score = 42.4 bits (98), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 79/180 (43%), Gaps = 24/180 (13%)

Query: 43  RIVFVTGQIEDHMA----------TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI 92
           +I+ + GQIE H              +  QL+ +E  +  K + + +N+ GG V AG+AI
Sbjct: 48  QILPIIGQIEGHQVLPAQSKSTKYEHVIPQLIAMERNDNVKGVLIILNTVGGDVEAGLAI 107

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS-GGFSGQASDI 151
            + +  +  P  +  +G   S+G  L  A      F  P+A +++H     GF    +  
Sbjct: 108 AEMINSLSKPTVSIVIGGGHSIGVPL--ATSSSYSFITPSATMIVHPIRMNGFVIGVAQT 165

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDHIMSASEACDWGVVDK 203
             + Q   K++ R++   V+      +E+ + +        D   I+   +A + G++D+
Sbjct: 166 FNYFQ---KMQERIDNFIVRTSKIKKDELRQMMLKSDELLNDMGTILIGKQAVECGLIDE 222


>gi|169334787|ref|ZP_02861980.1| hypothetical protein ANASTE_01193 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257525|gb|EDS71491.1| hypothetical protein ANASTE_01193 [Anaerofustis stercorihominis DSM
           17244]
          Length = 272

 Score = 42.4 bits (98), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 39/180 (21%), Positives = 79/180 (43%), Gaps = 22/180 (12%)

Query: 43  RIVFVTGQIEDHMAT----------LICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI 92
           + + + G+IE H+             I   ++ +E ++  K + L +N+ GG V AG+AI
Sbjct: 46  QTISIIGEIEGHIEAGSPKKSTKYEHIIPMIIDVEEKDEIKGVLLILNTMGGDVEAGLAI 105

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIE 152
            + +  +  P  T  +G + S+G  L  +G     F +P A +++H      +G    + 
Sbjct: 106 SELISGMSKPCVTLVLGGSHSIGVPLAVSG--SYSFIVPTATMMIHPIR--TTGLVIGVL 161

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
           +      K++ R+ E  V++     E   K +        D   ++   +A + G++D V
Sbjct: 162 QSFLYFQKMQERITEFVVEHSNVDKELFNKIMLNTDELVNDMGSVLVGEQAVEIGLIDAV 221


>gi|312961504|ref|ZP_07776005.1| clp protease [Pseudomonas fluorescens WH6]
 gi|311284183|gb|EFQ62763.1| clp protease [Pseudomonas fluorescens WH6]
          Length = 185

 Score = 42.4 bits (98), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 10/135 (7%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L +++ GG    G  +Y  ++ +  P+     G   SMG +L  A  +  R   P++R L
Sbjct: 37  LNLSTTGGSTNFGFTLYTFLKALPVPLCAINAGNIESMGIILFLAANR--RITAPHSRFL 94

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD-------RDHI 189
           +H  +  FS  + D +R  + +  +   L   YVK       + E  LD        + +
Sbjct: 95  IHPMNWYFSQNSVDHQRLREYLSSLDNDLAR-YVKIYELETLQAETQLDIFKCLSAEEKV 153

Query: 190 MSASEACDWGVVDKV 204
           ++A E+  +G+  +V
Sbjct: 154 IAAHESLAYGIAHEV 168


>gi|253682717|ref|ZP_04863514.1| putative Clp protease [Clostridium botulinum D str. 1873]
 gi|253562429|gb|EES91881.1| putative Clp protease [Clostridium botulinum D str. 1873]
          Length = 231

 Score = 42.4 bits (98), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 92/200 (46%), Gaps = 31/200 (15%)

Query: 43  RIVFVTGQIEDHMATL----------ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI 92
           +++ + GQIE H              +  QL+ +E  +  + + + +N+ GG V AG+AI
Sbjct: 34  QVLPIIGQIEGHSVLPPQSKATKYEHVIPQLVDIEMNDAIEGVLIILNTVGGDVEAGLAI 93

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIE 152
            + +  +  P  +  +G   S+G  L +       F  P+A +++H      +G    + 
Sbjct: 94  AEMISSLSKPSVSLVIGGGHSIGVPLATCAN--YSFISPSATMIVHPIR--MNGLVLGVP 149

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL---------DRDHIMSASEACDWGVVDK 203
           +  +   K++ R+ + ++K   K  ++  ++L         D   I+   +A D+G++D+
Sbjct: 150 QTFEYFNKMQERIID-FIKRTSKINKDTLRSLMLQTDELLNDMGTILIGKQAVDYGLIDE 208

Query: 204 V--LMSRID-----IEEKSK 216
           V  L S I+     I+ KSK
Sbjct: 209 VGGLSSAINKLEEIIDSKSK 228


>gi|255571636|ref|XP_002526763.1| conserved hypothetical protein [Ricinus communis]
 gi|223533890|gb|EEF35617.1| conserved hypothetical protein [Ricinus communis]
          Length = 78

 Score = 42.0 bits (97), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 1/74 (1%)

Query: 132 NARILLHQPSGGF-SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           + R+++HQP  GF   +  +    A++++K+   L  IY +   K    V + ++RD  M
Sbjct: 2   DVRVMIHQPIAGFYEDKIGEFVLEAKELLKLCEILTRIYAQRTRKHLWVVSEDMERDVFM 61

Query: 191 SASEACDWGVVDKV 204
           SA EA   G+VD V
Sbjct: 62  SAVEAQAHGIVDLV 75


>gi|15895087|ref|NP_348436.1| periplasmic serine protease [Clostridium acetobutylicum ATCC 824]
 gi|15024785|gb|AAK79776.1|AE007690_3 Periplasmic serine protease, YMFB B.subtilis ortholog [Clostridium
           acetobutylicum ATCC 824]
 gi|325509225|gb|ADZ20861.1| Periplasmic serine protease [Clostridium acetobutylicum EA 2018]
          Length = 226

 Score = 42.0 bits (97), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 69/154 (44%), Gaps = 12/154 (7%)

Query: 59  ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLL 118
           I  +L+ +E     K + + +N+ GG V AG+AI + ++ +  P  +  +G   S+G  L
Sbjct: 58  IIPRLMNVEYNPEIKGVLIILNTIGGDVEAGLAIAEMIRSLSKPTVSLVIGGGHSIGVPL 117

Query: 119 LSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYE 178
             A      F  P A +++H      +G    + +  Q   K++ R++E  V+      E
Sbjct: 118 --ATSSNYSFISPTATMIIHPIR--MNGLIIGVPQTFQYFNKMQERISEFIVRTSKIKKE 173

Query: 179 EVEKTL--------DRDHIMSASEACDWGVVDKV 204
            + + +        D   I+   +A  +G++D V
Sbjct: 174 TLTELMLKTDELLNDMGTILIGKQAVKYGLIDSV 207


>gi|294673677|ref|YP_003574293.1| putative Clp protease [Prevotella ruminicola 23]
 gi|294473420|gb|ADE82809.1| putative Clp protease [Prevotella ruminicola 23]
          Length = 365

 Score = 42.0 bits (97), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 73/151 (48%), Gaps = 14/151 (9%)

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           ++ +++   E+++ I+S GG  +  ++I+   + +   ++   +G  AS  ++  S G K
Sbjct: 30  YVLSKHKDTEVNVLIDSLGGQSSTALSIFSAFK-LHGNVNVHFVGMNASAATIA-SLGAK 87

Query: 125 GMRFALPNARILLHQPSGGF--SGQA---------SDIERHAQDIVKIKRRLNEIYVKNC 173
            +     +A  L+H+ S GF   GQ          ++IE    D+ K+   + ++Y   C
Sbjct: 88  HITMD-SSAMYLVHKCSVGFFEWGQLNSDGLQALIANIEHQKADLDKLDANIAQMYATRC 146

Query: 174 GKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            K  E +   +     ++A EA +WG VD++
Sbjct: 147 KKEPEALLALMKEGGWLTAKEALEWGFVDEL 177


>gi|169830994|ref|YP_001716976.1| peptidase S14, ClpP [Candidatus Desulforudis audaxviator MP104C]
 gi|169637838|gb|ACA59344.1| peptidase S14, ClpP [Candidatus Desulforudis audaxviator MP104C]
          Length = 266

 Score = 42.0 bits (97), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 22/178 (12%)

Query: 45  VFVTGQIEDHMATL----------ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           + + GQIE HM             I  QL+ LE     + I + +N+ GG V AG+AI +
Sbjct: 61  LIIVGQIEGHMVLPNQNKTTKYEHILPQLVALEQHPDIEGILVILNTVGGDVEAGLAIAE 120

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            +  I  P  +  +G   S+G  +  A      +    A + +H      +GQ   + + 
Sbjct: 121 MLSSISKPTVSLVLGGGHSIGVPI--AVCTSYSYIAETASMTIHPIR--ITGQILTVPQT 176

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
            + + K++ R+    VK+   T E   + +        D   ++   EA D G++D+V
Sbjct: 177 FEYLEKMQDRVVRFVVKHSRITEERFRELMFRTGELARDIGTVLIGKEAVDCGLIDEV 234


>gi|330430960|gb|AEC22293.1| peptidase S14 [Pusillimonas sp. T7-7]
          Length = 240

 Score = 42.0 bits (97), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 12/136 (8%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE-----KGMRFA 129
           I L I+SPGG V A  A+   +   K  +     G AAS  + +  A +     +G  F 
Sbjct: 61  IHLRIDSPGGDVFAARAMMTAISQHKAKVIAHVDGLAASAATGICMACDEVEITQGAGFM 120

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           + NA  +         G  +D+ + ++ + KI   L++ Y K  G+  E++   +D +  
Sbjct: 121 IHNAWTIA-------IGNKADMGKTSELLGKIDAGLSDDYAKRTGQKSEQITSWMDEETW 173

Query: 190 MSASEACDWGVVDKVL 205
            +A EA + G  D+ +
Sbjct: 174 FTADEAVEHGFADRAV 189


>gi|48697263|ref|YP_025030.1| putative ClpP-like protease [Lactobacillus phage phiAT3]
 gi|47607154|gb|AAT36490.1| putative ClpP-like protease [Lactobacillus phage phiAT3]
          Length = 228

 Score = 42.0 bits (97), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 28/132 (21%), Positives = 65/132 (49%), Gaps = 2/132 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +++L I S GG V     I + ++  +  ++   M  A S  S++ + G   ++ A P A
Sbjct: 42  DVTLEITSNGGEVDPATEICNALRSYQGNVTAKVMSNAYSAASIV-AMGANKVQMA-PGA 99

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           ++++H+ S   SG + +++  +  +      +  +Y    GK  ++    +D++  + A 
Sbjct: 100 KMMIHRASSDASGNSHEMDAASGMLQTTDSAIASLYSAKTGKPADDFLALMDKETWLDAD 159

Query: 194 EACDWGVVDKVL 205
           +A + G+ D+ L
Sbjct: 160 QAIELGLADEKL 171


>gi|255033736|ref|YP_003090180.1| protease/scaffold protein gp4 [Burkholderia phage KS9]
 gi|254832774|gb|ACT83017.1| protease/scaffold protein gp4 [Burkholderia phage KS9]
          Length = 251

 Score = 42.0 bits (97), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 4/142 (2%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS-LLLSAGEKGMRFALPNA 133
           I L INSPGG V A  A+   ++     +     G AAS  S ++L+A E  +      A
Sbjct: 44  IHLRINSPGGDVFAARAMETAIRGHSARVIAHVDGVAASAASFVMLAADEVEI---TDGA 100

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H       G A D+   A+ +  +   L   Y K  G++ +++   +  +  MS+ 
Sbjct: 101 FVMIHNAWTFAMGNADDLRESAKLLDAVDASLVRTYAKETGQSEDDISAWMAAETWMSSD 160

Query: 194 EACDWGVVDKVLMSRIDIEEKS 215
           EA   G  D++  +  D +  +
Sbjct: 161 EAVQRGFADRLAGAGADAQASA 182


>gi|325263865|ref|ZP_08130598.1| Clp protease [Clostridium sp. D5]
 gi|324030903|gb|EGB92185.1| Clp protease [Clostridium sp. D5]
          Length = 242

 Score = 42.0 bits (97), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 83/182 (45%), Gaps = 26/182 (14%)

Query: 43  RIVFVTGQIEDHMATL----------ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI 92
           +++ + G+IE H A            +  +L   E  +  + I + +N+ GG V AG+AI
Sbjct: 38  QLMTIIGEIEGHEAVSGNTKATKYEHLIPRLAEAEDNDDIEGILILLNTLGGDVEAGLAI 97

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH--QPSGGFSGQASD 150
            + +  +  P  +  +G + S+G  L  + +    F +P+  +++H  + +G F G    
Sbjct: 98  AEMIASLSKPTVSLVLGGSHSIGGPLAVSAD--YSFIVPSGTMIVHPVRSTGMFIG---- 151

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDHIMSASEACDWGVVD 202
           + +  +++ K + R+      +   T E +EK +        D   ++   EA   G++D
Sbjct: 152 VIQSYRNMEKTQDRITRFIASHSNITQERLEKLMLDSSQLVKDVGTLLEGEEAVKEGLID 211

Query: 203 KV 204
           +V
Sbjct: 212 EV 213


>gi|281491948|ref|YP_003353928.1| phage ATP-dependent endopeptidase ClpP [Lactococcus lactis subsp.
           lactis KF147]
 gi|281375657|gb|ADA65161.1| Phage protein, ATP-dependent endopeptidase ClpP, proteolytic
           subunit clpP [Lactococcus lactis subsp. lactis KF147]
          Length = 237

 Score = 41.6 bits (96), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 2/133 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           +E+ L I+S GG V +   IY  ++     I     G AAS  S++  AG+  +  + P 
Sbjct: 45  EEVILNISSNGGDVFSASEIYTKLKNSNKNIVVNIEGIAASAASVIAMAGDT-VNIS-PT 102

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A++++H+ S G  G A D E  A+ +  + + +   Y    G    ++ + +  +  M+A
Sbjct: 103 AQLMIHKASSGGQGNADDFEHEAKVLNGVDQSITAAYELKTGMKQSDLLQLMSNETWMTA 162

Query: 193 SEACDWGVVDKVL 205
            +A D G  D ++
Sbjct: 163 QDAVDKGFADNIM 175


>gi|70732065|ref|YP_261821.1| Clp protease [Pseudomonas fluorescens Pf-5]
 gi|68346364|gb|AAY93970.1| clp protease, putative [Pseudomonas fluorescens Pf-5]
          Length = 185

 Score = 41.6 bits (96), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 59/135 (43%), Gaps = 10/135 (7%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L +++ GG    G  +Y  ++ +  P+     G   SMG +L  A  +  R   P++R L
Sbjct: 37  LNLSTTGGSTNFGFTLYTFLKSLPVPLCAINAGNIESMGIILFLAANR--RITTPHSRFL 94

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD-------RDHI 189
           +H  +  FS  + D +R  + +  +   L   YVK         E  LD        + +
Sbjct: 95  IHPMNWYFSQNSVDHQRLREYLSSLDNDLAR-YVKIYEIETAAAETQLDIFKCLSAEEKV 153

Query: 190 MSASEACDWGVVDKV 204
           ++A E+  +G+  +V
Sbjct: 154 IAAHESLAYGIAHEV 168


>gi|125973612|ref|YP_001037522.1| ATP-dependent Clp protease proteolytic subunit ClpP [Clostridium
           thermocellum ATCC 27405]
 gi|256003432|ref|ZP_05428423.1| peptidase S14 ClpP [Clostridium thermocellum DSM 2360]
 gi|281417817|ref|ZP_06248837.1| peptidase S14 ClpP [Clostridium thermocellum JW20]
 gi|125713837|gb|ABN52329.1| ATP-dependent Clp protease proteolytic subunit ClpP [Clostridium
           thermocellum ATCC 27405]
 gi|255992722|gb|EEU02813.1| peptidase S14 ClpP [Clostridium thermocellum DSM 2360]
 gi|281409219|gb|EFB39477.1| peptidase S14 ClpP [Clostridium thermocellum JW20]
 gi|316940146|gb|ADU74180.1| peptidase S14 ClpP [Clostridium thermocellum DSM 1313]
          Length = 257

 Score = 41.6 bits (96), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 74/176 (42%), Gaps = 22/176 (12%)

Query: 47  VTGQIEDHMA----------TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           V GQIE HM             +  QL+ +E       + L +N+ GG V AG+AI + +
Sbjct: 50  VIGQIEGHMVLPPQNKTTKYEHVIPQLVAIEESEEIDGLLLILNTVGGDVEAGLAIAEMI 109

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQ 156
             +  P  +  +G   S+G  +  A      F  P+A + +H      +G    + +  +
Sbjct: 110 ASMSKPTVSLVLGGGHSIGVPMAVA--TNYSFIAPSATMTIHPIR--LNGMVIGVPQTYE 165

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
              +++ R+ +   KN   + E   + +        D   I+   EA  +G++D++
Sbjct: 166 YFDRMQDRVVQFVTKNSNISKERFRELMLKTGELANDVGTILFGEEAVKYGLIDEM 221


>gi|225573279|ref|ZP_03782034.1| hypothetical protein RUMHYD_01470 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039411|gb|EEG49657.1| hypothetical protein RUMHYD_01470 [Blautia hydrogenotrophica DSM
           10507]
          Length = 223

 Score = 41.6 bits (96), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 3/155 (1%)

Query: 59  ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLL 118
           +  QL   E      +I+++INSPGG   A   IY+ +      ++    G AAS  S++
Sbjct: 15  VTPQLFKEELMAGSGDITVWINSPGGDCVAAAQIYNMLMDYPHNVTVKIDGIAASAASVI 74

Query: 119 LSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYE 178
             AG +      P + +++H P     G  +++++  + +  +K  +   Y    G +  
Sbjct: 75  AMAGTR--VLVSPVSMMMIHNPMTVAMGDTAEMQKAIEMLGSVKDSIINAYEIKTGLSRA 132

Query: 179 EVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
           ++   +D +  M A +A + G  D VL SR +I E
Sbjct: 133 KLSHLMDAETWMDAGKAVELGFADGVL-SRAEIPE 166


>gi|108708098|gb|ABF95893.1| ATP-dependent Clp protease proteolytic subunit, putative, expressed
           [Oryza sativa Japonica Group]
          Length = 230

 Score = 41.6 bits (96), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 9/67 (13%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS---------PGGVVTAGMAIY 93
           RIV++   +   +  L+ AQL++LE  N ++ + +YINS         P G+ + G AIY
Sbjct: 139 RIVYIGMPLVPAVTELVVAQLMYLEWMNSKEPVYIYINSTGTARDDGEPVGMESEGFAIY 198

Query: 94  DTMQFIK 100
           D M  +K
Sbjct: 199 DAMMRMK 205


>gi|163814155|ref|ZP_02205547.1| hypothetical protein COPEUT_00309 [Coprococcus eutactus ATCC 27759]
 gi|158450604|gb|EDP27599.1| hypothetical protein COPEUT_00309 [Coprococcus eutactus ATCC 27759]
          Length = 237

 Score = 41.6 bits (96), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 73/145 (50%), Gaps = 14/145 (9%)

Query: 67  EAENPQ--KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           +AEN +  K + + IN+ GG V +G+AI +    +  P+ T  +G   S+G  L ++G+ 
Sbjct: 71  QAENCREIKGVLVLINTVGGDVESGLAISEMFASLSKPVVTLVLGGGHSIGVPLATSGDA 130

Query: 125 GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK-- 182
              F +P A +++H      S     ++++ + I K++ R+ +  V +   ++++ +K  
Sbjct: 131 --SFIVPTATMVVHPIR--TSTAVLGVKQNFEYIEKMQDRIIDFTVVHSDISHDDFKKYM 186

Query: 183 ------TLDRDHIMSASEACDWGVV 201
                 T D   ++  +EA   G++
Sbjct: 187 FNTAELTKDVGSVLVGNEAVRAGII 211


>gi|260597538|ref|YP_003210109.1| hypothetical protein CTU_17460 [Cronobacter turicensis z3032]
 gi|260216715|emb|CBA30102.1| hypothetical protein CTU_17460 [Cronobacter turicensis z3032]
          Length = 284

 Score = 41.6 bits (96), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 68/132 (51%), Gaps = 2/132 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           ++++ INSPGG +  G+AIY+ ++     ++   +G AAS  S++  AG++ ++     A
Sbjct: 75  DVTVNINSPGGDMFEGLAIYNLLREYDGKVTVKVLGLAASAASIIAMAGDE-VQIGR-GA 132

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H       G   D+ + A D+    + ++ IY    G     V+K +D +  +  S
Sbjct: 133 FLMIHNCWVCAMGNRHDLAQIATDMAPFDKAMSGIYQARSGLDASTVDKMMDSETYIGGS 192

Query: 194 EACDWGVVDKVL 205
           EA + G  D +L
Sbjct: 193 EAVEKGFADSLL 204


>gi|149392599|gb|ABR26102.1| ATP-dependent clp protease proteolytic subunit [Oryza sativa Indica
           Group]
          Length = 77

 Score = 41.6 bits (96), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 29/41 (70%)

Query: 168 IYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           IY K+ G+  +++E+ ++RD  M   EA DWG++D+V+ +R
Sbjct: 2   IYQKHTGQEIDKIEQCMERDLFMDPEEARDWGLIDEVIENR 42


>gi|302392320|ref|YP_003828140.1| peptidase S49 [Acetohalobium arabaticum DSM 5501]
 gi|302204397|gb|ADL13075.1| peptidase S49 [Acetohalobium arabaticum DSM 5501]
          Length = 282

 Score = 41.6 bits (96), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 88/200 (44%), Gaps = 33/200 (16%)

Query: 45  VFVTGQIEDHMA----------TLICAQLLFLEAENPQ-KEISLYINSPGGVVTAGMAIY 93
           + + GQIE H +            +  QL+ +E +NP+ K + + +N+ GG + AG+AI 
Sbjct: 61  INIVGQIEGHRSLPPKNKTTKYEHLIPQLVAVE-QNPKVKGVIITLNTVGGDIEAGLAIS 119

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           + +  +  P  +  +G   S+G  +  A +K   F    A + +H      +G+   + +
Sbjct: 120 EMLSSLSKPTVSLVLGGGHSIGGPIAVATDK--SFIAETATMTIHPIR--LTGKVIGVPQ 175

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDHIMSASEACDWGVVDKV- 204
               + K++ R+     ++   + E+    +        D   ++   EA D G++D+V 
Sbjct: 176 TYDYLDKMQDRVINFVSRHSNISNEDFRNLMFRTGELVRDVGTVLIGEEAVDKGMIDEVG 235

Query: 205 --------LMSRIDIEEKSK 216
                   L  +ID EE +K
Sbjct: 236 GLSQAIKALKEKIDAEEDNK 255


>gi|184153715|ref|YP_001842056.1| phage Clp-protease [Lactobacillus reuteri JCM 1112]
 gi|227365058|ref|ZP_03849093.1| S14 family endopeptidase ClpP [Lactobacillus reuteri MM2-3]
 gi|325681598|ref|ZP_08161119.1| ATP-dependent Clp protease, protease subunit [Lactobacillus reuteri
           MM4-1A]
 gi|183225059|dbj|BAG25576.1| phage clp-protease [Lactobacillus reuteri JCM 1112]
 gi|227069908|gb|EEI08296.1| S14 family endopeptidase ClpP [Lactobacillus reuteri MM2-3]
 gi|324979063|gb|EGC16009.1| ATP-dependent Clp protease, protease subunit [Lactobacillus reuteri
           MM4-1A]
          Length = 244

 Score = 41.6 bits (96), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 63/137 (45%), Gaps = 4/137 (2%)

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK-GMR 127
            N  ++I + I S GG V A   IY  ++     +     G AAS  S++  AG++  M 
Sbjct: 38  NNSDEDIEVDIASGGGSVFAASEIYTMLKAYSGKVVVNIQGLAASAASVIAMAGDEINMS 97

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
              P +++++H+ S    G A D    ++ +  + + +   Y    G   +++ + +  +
Sbjct: 98  ---PTSQMMIHKASTISMGNADDFAHDSKMLDVMDQSIVNAYEAKTGMDRDDILQLMANE 154

Query: 188 HIMSASEACDWGVVDKV 204
             M+A +A D G  D +
Sbjct: 155 TWMTAQDAVDKGFADNI 171


>gi|148544339|ref|YP_001271709.1| peptidase S14, ClpP [Lactobacillus reuteri DSM 20016]
 gi|148531373|gb|ABQ83372.1| peptidase S14, ClpP [Lactobacillus reuteri DSM 20016]
          Length = 243

 Score = 41.6 bits (96), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 63/137 (45%), Gaps = 4/137 (2%)

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK-GMR 127
            N  ++I + I S GG V A   IY  ++     +     G AAS  S++  AG++  M 
Sbjct: 37  NNSDEDIEVDIASGGGSVFAASEIYTMLKAYSGKVVVNIQGLAASAASVIAMAGDEINMS 96

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
              P +++++H+ S    G A D    ++ +  + + +   Y    G   +++ + +  +
Sbjct: 97  ---PTSQMMIHKASTISMGNADDFAHDSKMLDVMDQSIVNAYEAKTGMDRDDILQLMANE 153

Query: 188 HIMSASEACDWGVVDKV 204
             M+A +A D G  D +
Sbjct: 154 TWMTAQDAVDKGFADNI 170


>gi|254245318|ref|ZP_04938639.1| Protease subunit of ATP-dependent Clp proteases [Burkholderia
           cenocepacia PC184]
 gi|124870094|gb|EAY61810.1| Protease subunit of ATP-dependent Clp proteases [Burkholderia
           cenocepacia PC184]
          Length = 251

 Score = 41.6 bits (96), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 4/142 (2%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS-LLLSAGEKGMRFALPNA 133
           I L INSPGG V A  A+   ++     +     G AAS  S ++L+A E  +      A
Sbjct: 44  IHLRINSPGGDVFAARAMETAIRGHSARVIAHVDGVAASAASFVMLAADEVEI---TDGA 100

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H       G A D+   A+ +  +   L   Y K  G++ +++   +  +  MS+ 
Sbjct: 101 FVMIHNAWTFAMGNADDLRESAKLLDAVDASLVRTYAKETGQSEDDISAWMAAETWMSSD 160

Query: 194 EACDWGVVDKVLMSRIDIEEKS 215
           EA   G  D++  +  D +  +
Sbjct: 161 EAVQRGFADRLAGAGTDAQASA 182


>gi|194172975|ref|YP_002003619.1| ClpP ATP-dependent protease subunit [Escherichia phage rv5]
 gi|114796013|gb|ABI79187.1| ClpP ATP-dependent protease subunit [Escherichia phage rv5]
          Length = 349

 Score = 41.2 bits (95), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 7/119 (5%)

Query: 51  IEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQ 110
           ++DHM+ L   ++       P++ I + INSPGG V   MA     +  +  +     G 
Sbjct: 57  LQDHMSRLQTIRMA-----QPEESIRVIINSPGGCVHIAMAYLQAFRESQASVVAHAEGM 111

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIY 169
             S G++L    ++  R   P+   + H   GG  G   ++        K   RL E Y
Sbjct: 112 CCSAGTILWLGCKE--RTVAPDTEFMFHYYQGGTYGNGVNMNTQVSYWKKRFERLIEKY 168


>gi|312599320|gb|ADQ91343.1| hypothetical protein BpV2_176c [Bathycoccus sp. RCC1105 virus BpV2]
          Length = 191

 Score = 41.2 bits (95), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 29/129 (22%), Positives = 60/129 (46%), Gaps = 3/129 (2%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +++ S GG + AG++  + ++  +  + T   G   S  + LL  G +  R    NA +L
Sbjct: 64  VHVCSEGGDLFAGISAMNIIEKSRVKVVTIAQGVCCSAATFLLLGGHE--RRIGKNAHVL 121

Query: 137 LHQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQ S  GF G+  +++   +   K+   + + Y +      ++ +K + RD  +   E 
Sbjct: 122 IHQISTNGFWGKYEELKDEMKSCDKLMDMVTKTYKEKTTIPQKQFKKIMKRDVYLDPQEC 181

Query: 196 CDWGVVDKV 204
             + VV  +
Sbjct: 182 IKYNVVHSI 190


>gi|70726774|ref|YP_253688.1| hypothetical protein SH1773 [Staphylococcus haemolyticus JCSC1435]
 gi|68447498|dbj|BAE05082.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 288

 Score = 41.2 bits (95), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 72/145 (49%), Gaps = 2/145 (1%)

Query: 59  ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLL 118
           I A+ +    +N +++I + +NS GG V  G+ IY+ ++ +   I+      AAS  SL+
Sbjct: 40  ISAKAVKDSLDNVKEDIVIRLNSGGGDVFEGIEIYNYLKSLSNHITIEVTALAASAASLV 99

Query: 119 LSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYE 178
             AG+K +      A +++H+ S    G  SDI++    +  I   + +IY    G   +
Sbjct: 100 AMAGDKII--IRTGANMMVHEASTMAFGNKSDIQKTLNALTAIDTSIVDIYHDRTGLDRD 157

Query: 179 EVEKTLDRDHIMSASEACDWGVVDK 203
           E+   +  +  ++A EA + G  D+
Sbjct: 158 EIVNLITNETWLTADEAINKGFADE 182


>gi|315654944|ref|ZP_07907849.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
 gi|315490905|gb|EFU80525.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
          Length = 288

 Score = 41.2 bits (95), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 74/166 (44%), Gaps = 4/166 (2%)

Query: 42  ERIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           ER++ + G I  E  +   I   L   E       +++++NSPGG V A   IY+ M   
Sbjct: 21  ERVLRINGVIAEESWLDDDITPTLFASELNAGSGPVTIWLNSPGGDVVAAARIYN-MLLD 79

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
            P   T  +   A+  + +++     +  + P + +++H P+    G  +++ R    + 
Sbjct: 80  YPGKVTVNIDGIAASAASVIAMAASTVAMS-PVSMLMIHNPATLAMGDKTELSRALDMLE 138

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            +K  +   Y    G +  ++ K +D +  M A  A D G  D++L
Sbjct: 139 SVKDSIINAYQLKTGLSRAKLSKLMDAETWMDARAAIDLGFADELL 184


>gi|259908701|ref|YP_002649057.1| ATP-dependent Clp protease proteolytic subunit [Erwinia pyrifoliae
           Ep1/96]
 gi|224964323|emb|CAX55832.1| ATP-dependent Clp protease proteolytic subunit [Erwinia pyrifoliae
           Ep1/96]
          Length = 282

 Score = 41.2 bits (95), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 77/153 (50%), Gaps = 8/153 (5%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMG 115
           A+ I A L  +  E    ++++ INSPGG +  G+AIY+ ++  +  ++   +G AAS  
Sbjct: 61  ASRIAAALRSIGGE----DVTVNINSPGGDMFEGLAIYNLLREYEGKVTVKVLGLAASAA 116

Query: 116 SLLLSAGEKGMRFALPNARILLHQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCG 174
           S++  AG++     +  A  L+      F+ G   ++ + A ++    R +N+IY    G
Sbjct: 117 SIIAMAGDE---VQIGRAAFLMIHNCWTFAMGNRHEMAKIAAELEPFDRAMNDIYGARTG 173

Query: 175 KTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
                +E  ++ +  +  SE+ + G  D++L +
Sbjct: 174 LDAATIETMMNAETYIGGSESVEKGFADRLLTA 206


>gi|229140600|ref|ZP_04269155.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           BDRD-ST26]
 gi|228643161|gb|EEK99437.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           BDRD-ST26]
          Length = 164

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 57/112 (50%), Gaps = 6/112 (5%)

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NARILLHQPSGGFSGQA 148
           MAIY+ ++  +   +    G   S+ S++  AG+K     +P NA +++H+P  G  G A
Sbjct: 1   MAIYNMIKRHEGYKTVHIDGLGGSIASVIAFAGDK---LIVPSNAYLMIHKPWNGTYGNA 57

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNC--GKTYEEVEKTLDRDHIMSASEACDW 198
           +D  + A D+  I+  +  +Y  N   G   EE+ + +  +  ++  +A ++
Sbjct: 58  NDFRKMADDLDAIEEGIINVYKDNLKEGVDIEEIREMVQNETWLNGLKASEY 109


>gi|83944470|ref|ZP_00956923.1| putative ClpP-like protease [Sulfitobacter sp. EE-36]
 gi|83844672|gb|EAP82556.1| putative ClpP-like protease [Sulfitobacter sp. EE-36]
          Length = 284

 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 2/131 (1%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           +++ +NSPGG    G+AIY+ ++    P++   +G AAS  S++  AG++ +R A     
Sbjct: 76  VTVNVNSPGGDYFEGLAIYNLLREHPEPVTVNILGIAASAASVIAMAGDE-VRIARAGF- 133

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           +++H    G +G    +   A  +        EIY    G    ++   LDR+  +    
Sbjct: 134 LMIHNTWIGAAGDRHGLREVADWLEPFDATAVEIYAARTGIATADLATMLDRETWIGGQS 193

Query: 195 ACDWGVVDKVL 205
           A D G  D +L
Sbjct: 194 AIDQGFADTLL 204


>gi|325690442|gb|EGD32445.1| peptidase s14, clpp [Streptococcus sanguinis SK115]
          Length = 227

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 76/166 (45%), Gaps = 6/166 (3%)

Query: 43  RIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           R++ + G I  E  +   +  Q+   E  +    ++L+INSPGG V A   IY+ +   K
Sbjct: 14  RVLHLNGTIASESWVDDDVTPQIFKNELMSGSGPLTLWINSPGGDVFAAAQIYNMLMDYK 73

Query: 101 PPISTFCMGQAASMGSLLLSAGEK-GMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
             ++    G AAS  S++  AG    M    P A +++H P     G + ++ER    + 
Sbjct: 74  DDVTVNIDGIAASAASVIAMAGTTVNMS---PVAMMMIHNPMTVAIGDSKEMERAIAMLS 130

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           ++K  +   Y      +  ++   +D +   +A +A + G  D +L
Sbjct: 131 EVKESILNAYEIKTSLSRVQLSHLMDAESWFNAKKALELGFADSIL 176


>gi|229193795|ref|ZP_04320727.1| Peptidase S14 ClpP [Bacillus cereus ATCC 10876]
 gi|228589678|gb|EEK47565.1| Peptidase S14 ClpP [Bacillus cereus ATCC 10876]
          Length = 241

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 83/176 (47%), Gaps = 6/176 (3%)

Query: 42  ERIVFVTGQI-EDHMATLICAQLLFLEAENPQK-EISLYINSPGGVVTAGMAIYDTMQFI 99
           E  ++V G I E      + A  +  +  N +  +I LYINS GG V  G++IY+ ++  
Sbjct: 21  ENDIYVYGTIGESWWEESVSANAIKRKLNNVKDGDIHLYINSFGGSVFDGISIYNQLKRH 80

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NARILLHQPSGGFSGQASDIERHAQDI 158
              +     G AAS  SL+  AG++     +P N+ +++H+ S    G     E+    +
Sbjct: 81  SSKVIVHVDGIAASAASLIAMAGDE---IIMPANSMLMVHRASTFAWGNREVFEQQLNAL 137

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
            KI + +   Y+K       E+E  L  +  ++A E   +G+ D++   + D  E+
Sbjct: 138 DKIDQSVTNTYMKRFVGERSEMEDLLKNETWLTAEECKAFGLCDEIADEKEDPNEE 193


>gi|167757874|ref|ZP_02430001.1| hypothetical protein CLOSCI_00205 [Clostridium scindens ATCC 35704]
 gi|167664528|gb|EDS08658.1| hypothetical protein CLOSCI_00205 [Clostridium scindens ATCC 35704]
          Length = 199

 Score = 40.8 bits (94), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 68/140 (48%), Gaps = 3/140 (2%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I+++INSPGG   A   IY+ +      ++    G AAS  S++  AG K      P +
Sbjct: 6   DITVWINSPGGDCVAAAQIYNMLMDYPHNVTVKIDGIAASAASVIAMAGTK--VLVSPVS 63

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H P     G  +++++    +  +K  +   Y    G +  ++   +D +  M A+
Sbjct: 64  MMMIHNPMTVAMGDTAEMQKAIDMLGSVKDSIINAYEIKTGLSRAKLSHLMDAETWMDAN 123

Query: 194 EACDWGVVDKVLMSRIDIEE 213
           +A + G  D++L  R D+ E
Sbjct: 124 KAVELGFADEIL-KRSDVLE 142


>gi|92117911|ref|YP_577640.1| peptidase S14, ClpP [Nitrobacter hamburgensis X14]
 gi|91800805|gb|ABE63180.1| peptidase S14, ClpP [Nitrobacter hamburgensis X14]
          Length = 351

 Score = 40.8 bits (94), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/128 (21%), Positives = 62/128 (48%), Gaps = 4/128 (3%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK-GMRFALP 131
            ++++ +NS GG+V   +AIY+ +   K  ++      AAS  +++  AG++  MR    
Sbjct: 40  NDLTVRLNSGGGIVNDAIAIYNALSTHKGKVTIQVDAIAASAATVIAMAGQEIVMRV--- 96

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
            + +++H P     G   D E+  + +     ++  IY +  G   ++V   +  +  ++
Sbjct: 97  GSIMMIHDPMNVTFGNIEDHEKTIEQLTAYANQMASIYAERSGNELDDVRSDMKAEIWLT 156

Query: 192 ASEACDWG 199
           A +A + G
Sbjct: 157 AEQAVEKG 164


>gi|229176194|ref|ZP_04303685.1| Peptidase S14 ClpP [Bacillus cereus MM3]
 gi|228607289|gb|EEK64620.1| Peptidase S14 ClpP [Bacillus cereus MM3]
          Length = 241

 Score = 40.8 bits (94), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 67/132 (50%), Gaps = 4/132 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-N 132
           +I LYINS GG V  G++IY+ ++     +     G AAS  SL+  AG++     +P N
Sbjct: 55  DIHLYINSFGGSVFDGISIYNQLKRHSSKVIVHVDGIAASAASLIAMAGDE---IIMPAN 111

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           + +++H+ S    G     E+    + KI + +   Y+K       E+E+ L  +  ++A
Sbjct: 112 SMLMVHRASTFAWGNREVFEQQLNALDKIDQSVTNTYMKRFVGERSEMEELLKNETWLTA 171

Query: 193 SEACDWGVVDKV 204
            E   +G+ D++
Sbjct: 172 EECKAFGLCDEI 183


>gi|215433747|gb|ACJ66732.1| putative ATP-dependent Clp protease proteolytic subunit
           [Arabidopsis thaliana]
          Length = 99

 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 2/72 (2%)

Query: 136 LLHQPSGGFSG--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           ++ QP    SG   ASD+   A++++  +  L E+  K+ G + E V   + R + M A 
Sbjct: 1   MIQQPRVPSSGLMPASDVLIRAKEVITNRDILVELLSKHTGNSVETVANVMRRPYYMDAP 60

Query: 194 EACDWGVVDKVL 205
           +A ++GV+D++L
Sbjct: 61  KAKEFGVIDRIL 72


>gi|83955408|ref|ZP_00964039.1| putative ClpP-like protease [Sulfitobacter sp. NAS-14.1]
 gi|83840052|gb|EAP79227.1| putative ClpP-like protease [Sulfitobacter sp. NAS-14.1]
          Length = 284

 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 2/131 (1%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           +++ +NSPGG    G+AIY+ ++    P++   +G AAS  S++  AG++ +R A     
Sbjct: 76  VTVNVNSPGGDYFEGLAIYNLLREHPEPVTVNILGIAASAASVIAMAGDE-VRIARAGF- 133

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           +++H    G +G    +   A  +        EIY    G    ++   LDR+  +    
Sbjct: 134 LMIHNTWIGAAGDRHGLREVADWLEPFDATAVEIYAARTGIATADLAMMLDRETWIGGQS 193

Query: 195 ACDWGVVDKVL 205
           A D G  D +L
Sbjct: 194 AIDQGFADTLL 204


>gi|262872|gb|AAB24780.1| stress protein G7=ClpP homolog {N-terminal} [Bacillus subtilis,
          IS58, Peptide Partial, 21 aa]
          Length = 21

 Score = 40.4 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/21 (71%), Positives = 19/21 (90%)

Query: 16 LGLVPMVVEQTNRGERSYDIY 36
          + L+P V+EQTNRGER+YDIY
Sbjct: 1  MNLIPTVIEQTNRGERAYDIY 21


>gi|254510472|ref|ZP_05122539.1| peptidase S14, ClpP [Rhodobacteraceae bacterium KLH11]
 gi|221534183|gb|EEE37171.1| peptidase S14, ClpP [Rhodobacteraceae bacterium KLH11]
          Length = 342

 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 61/124 (49%), Gaps = 4/124 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK-GMRFALPN 132
           ++++ INS GG    G+AIY+ +   +  +       AAS  S++  AG+   MR     
Sbjct: 41  DVTVRINSGGGYTDDGIAIYNALTAHRGSVDVIVDAIAASSASIIAMAGDTITMR---SG 97

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A +++H P+    G A D E+  + + K+   + +IY +  G+   ++ K +  +  ++ 
Sbjct: 98  ALMMIHDPARFTWGDAGDHEKSTEQLNKLADLMADIYAEQTGEDAADIRKEMKDELWLTG 157

Query: 193 SEAC 196
            EA 
Sbjct: 158 KEAV 161


>gi|153873549|ref|ZP_02002095.1| secreted protein [Beggiatoa sp. PS]
 gi|152069984|gb|EDN67904.1| secreted protein [Beggiatoa sp. PS]
          Length = 476

 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 3/113 (2%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS-PGGVVTAGMAIYDTMQ 97
           ++ +R + + G I    A  I  ++ +   ++ +  I L I+  PGG V  G  I   M+
Sbjct: 247 IISDRKIVLDGIIWPGTANNIVERIQYYNNKSTEYPIFLVIDYCPGGSVMEGTRIVKAMK 306

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASD 150
             + P+       AASM +++ +  +    +ALP+A I+ HQ  G   G  ++
Sbjct: 307 KSRAPVYVVVKALAASMAAVITTLADHS--YALPDAIIVHHQVWGMSFGNRTE 357


>gi|300933461|ref|ZP_07148717.1| peptidase S14 ClpP [Corynebacterium resistens DSM 45100]
          Length = 275

 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 72/165 (43%), Gaps = 4/165 (2%)

Query: 43  RIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           R++ + G I  E      I   L   E      +++++INSPGG V A   IY+ +    
Sbjct: 24  RVLRINGVIAEESWFDDDITPALFASELAAGSGDVTVWINSPGGDVVAAAQIYNMLIDYP 83

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
             +     G AAS  S++  AGE  +    P + +++H P+    G A ++ R    +  
Sbjct: 84  GHVRVHIDGIAASAASVIAMAGE--VVAMSPVSMLMIHNPATLAVGDADELGRAIDMLAA 141

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           +K  +   Y    G +  ++ + +D++  M A  A   G  D  L
Sbjct: 142 VKESIINAYELKTGMSRAKLARLMDQETWMDARAAISMGFADDYL 186


>gi|304390288|ref|ZP_07372241.1| protease subunit of ATP-dependent Clp protease family protein
           [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|304326044|gb|EFL93289.1| protease subunit of ATP-dependent Clp protease family protein
           [Mobiluncus curtisii subsp. curtisii ATCC 35241]
          Length = 290

 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 37/170 (21%), Positives = 76/170 (44%), Gaps = 4/170 (2%)

Query: 43  RIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           R++ ++G I  E      I   +   E       +++++NSPGG V A   IY+ M    
Sbjct: 22  RVLRISGTIAEESWFDDDITPSIFASELNAGSGPVTIWLNSPGGDVVAAAQIYN-MLIDY 80

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
           P   T  +   A+  + +++     +  + P + +++H P+    G   ++ R    +  
Sbjct: 81  PSHVTVNIDGIAASAASVIAMAASTVAMS-PVSMLMIHNPATMAVGDKDELARAMSMLDS 139

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           +K  +   Y +  G +  ++ K +D +  M A  A D G  D++L ++ D
Sbjct: 140 VKESILNAYQEKTGMSRAKLSKLMDAETWMDARAAIDMGFADELLTNQRD 189


>gi|242243098|ref|ZP_04797543.1| bacteriophage protease [Staphylococcus epidermidis W23144]
 gi|242233446|gb|EES35758.1| bacteriophage protease [Staphylococcus epidermidis W23144]
          Length = 248

 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 79/169 (46%), Gaps = 15/169 (8%)

Query: 42  ERIVFVTGQI-------EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           E ++ ++G I       E   AT +   L  +EA    K I + +NSPGG    G+ IY+
Sbjct: 20  EHVLVISGAIGEGGYFYEGTSATDVRKALENVEA----KTIRIKLNSPGGNAFDGLEIYN 75

Query: 95  TMQFIKPP-ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
            ++ +    I       A++   + + A E  MR     + +++H  S    G   ++ +
Sbjct: 76  YLKDLDAHVIVEVTALAASAASIIAMGADEVIMR---TGSTMMIHNASTITYGNKDEMLK 132

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
             + + KI   + ++Y +  G + +E+++ L+ +   +ASEA + G  D
Sbjct: 133 VYEYLAKIDTSIIDVYKEKTGLSTDEIKEMLNNETWFTASEAVEKGFAD 181


>gi|242240064|ref|YP_002988245.1| peptidase S14 ClpP [Dickeya dadantii Ech703]
 gi|242132121|gb|ACS86423.1| peptidase S14 ClpP [Dickeya dadantii Ech703]
          Length = 226

 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 10/137 (7%)

Query: 45  VFVTGQIEDHMATLICAQL--LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           ++ TG +  H  T +   L    +  +N Q  I LYINS GG + +G + Y  ++  + P
Sbjct: 38  MYFTGAVNQHNITELTTALDEANMRFKNAQA-IYLYINSRGGEMDSGHSGYLAIRSSRIP 96

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIK 162
           ++T  +    S  ++L    +   R  L +  I++H P  G   + +     A D++   
Sbjct: 97  VTTVDLSVVGSAATMLFCGAQN--RVMLKDTLIMIHAPKVGIGEKEA-----APDMLDSH 149

Query: 163 RRLNEIYVKNCGKTYEE 179
            +  + YV      Y E
Sbjct: 150 HQWMDNYVGMLKNIYRE 166


>gi|262113741|emb|CAR95408.1| hypothetical protein [Streptococcus phage phi-m46.1]
          Length = 139

 Score = 40.0 bits (92), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 4/125 (3%)

Query: 43  RIVFVTGQIEDH--MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           R + + GQI D       +  Q+   +      +I+L+INSPGG V A   IY+ +   K
Sbjct: 14  RTLRIEGQIGDETWFGDEVMPQVFKNDLHAGSGDITLWINSPGGDVFAAAPIYNMLMDYK 73

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
             +     G AAS  S++  AG        P A + +  P     G+  D ++  +   +
Sbjct: 74  GDVHVVIDGLAASAASVISMAGAT--VSMSPVAMMRMSNPWSTSQGEVKDTQKVLEMFGE 131

Query: 161 IKRRL 165
           IK  L
Sbjct: 132 IKESL 136


>gi|228966919|ref|ZP_04127959.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228792772|gb|EEM40334.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar sotto str. T04001]
          Length = 184

 Score = 40.0 bits (92), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 62/138 (44%), Gaps = 18/138 (13%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMG--------QAASMGSLLLSAGEKGM 126
           I++ +NSPGG V  G+AIY+ ++     I     G         A +   L+++ G    
Sbjct: 9   ININLNSPGGDVFDGIAIYNQLKNHPAKIIINVDGLAASAASIIAMAADELIMNTG---- 64

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
                 + +++H+ S    G   DI +    +  I + L +IY+        E+E  +  
Sbjct: 65  ------SMLMIHEASTWTWGTKLDIRKTLNALEGIDKSLADIYMTRYQGERSEIETMIAN 118

Query: 187 DHIMSASEACDWGVVDKV 204
           +   +A+EA ++G+  KV
Sbjct: 119 ETWFTANEAVEFGLAHKV 136


>gi|229061550|ref|ZP_04198894.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           AH603]
 gi|228717784|gb|EEL69434.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           AH603]
          Length = 184

 Score = 40.0 bits (92), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 62/138 (44%), Gaps = 18/138 (13%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMG--------QAASMGSLLLSAGEKGM 126
           I++ +NSPGG V  G+AIY+ ++     I     G         A +   L+++ G    
Sbjct: 9   ININLNSPGGDVFDGIAIYNQLKNHPAKIIINVDGLAASAASIIAMAADELIMNTG---- 64

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
                 + +++H+ S    G   DI +    +  I + L +IY+        E+E  +  
Sbjct: 65  ------SMLMIHEASTWTWGTKLDIRKTLNALEGIDKSLADIYMTRYQGERTEIETMIAN 118

Query: 187 DHIMSASEACDWGVVDKV 204
           +   +A+EA ++G+  KV
Sbjct: 119 ETWFTANEAVEFGLAHKV 136


>gi|160934088|ref|ZP_02081475.1| hypothetical protein CLOLEP_02951 [Clostridium leptum DSM 753]
 gi|156866761|gb|EDO60133.1| hypothetical protein CLOLEP_02951 [Clostridium leptum DSM 753]
          Length = 291

 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 74/176 (42%), Gaps = 22/176 (12%)

Query: 47  VTGQIEDHMATL----------ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           V GQIE H              +  QL+ +E E     + + +N+ GG V AG+AI + +
Sbjct: 66  VIGQIEGHYLQPSNTKTTKYEHVLPQLVAIEEEPRIDGLLVLLNTVGGDVEAGLAIAELL 125

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQ 156
             +K P  +  +G   S+G  L  A +K   F   +A + +H      SG    + +  +
Sbjct: 126 AGMKKPTVSMVLGGGHSIGVPLAVAAKK--SFIAKSASMTIHPVR--MSGLVLGVPQTLE 181

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEV--------EKTLDRDHIMSASEACDWGVVDKV 204
              +++ R+     +N   T E          E  +D   ++   +A   G++D++
Sbjct: 182 YFQRMQDRITSFVAENSNITPERFYELSMNTEELVMDVGTVLDGEDAVKEGLIDRL 237


>gi|146319204|ref|YP_001198916.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus suis
           05ZYH33]
 gi|145690010|gb|ABP90516.1| ATP-dependent CLP protease proteolytic subunit [Streptococcus suis
           05ZYH33]
          Length = 51

 Score = 39.7 bits (91), Expect = 0.26,   Method: Composition-based stats.
 Identities = 15/27 (55%), Positives = 21/27 (77%)

Query: 114 MGSLLLSAGEKGMRFALPNARILLHQP 140
           MG+++ S+G KG RF LPNA  ++HQP
Sbjct: 1   MGTIIASSGAKGKRFMLPNAEYMIHQP 27


>gi|313768387|ref|YP_004062067.1| hypothetical protein MpV1_184c [Micromonas sp. RCC1109 virus MpV1]
 gi|312599083|gb|ADQ91107.1| hypothetical protein MpV1_184c [Micromonas sp. RCC1109 virus MpV1]
          Length = 189

 Score = 39.7 bits (91), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 3/123 (2%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I ++I S GG + AG+ + + ++  +  + T   G   S  + +   G +  R    NA
Sbjct: 60  QIRVHIMSDGGDIFAGLNMMNVLERSRVKVITIAQGSCCSAATFVFLGGSE--RRMGRNA 117

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +L+HQ S  F G   +++   +   K    L ++Y+    K  E+  K L +  I    
Sbjct: 118 YLLIHQISTEFWGNFQELKTEMKSTEKFMNMLKKMYLSKT-KIPEKKFKRLMKKDIYLTP 176

Query: 194 EAC 196
           E C
Sbjct: 177 EKC 179


>gi|224823664|ref|ZP_03696773.1| peptidase S14 ClpP [Lutiella nitroferrum 2002]
 gi|224604119|gb|EEG10293.1| peptidase S14 ClpP [Lutiella nitroferrum 2002]
          Length = 238

 Score = 39.7 bits (91), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 4/131 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLL-LSAGEKGMRFALPNA 133
           I L+INSPGG V    A+   ++     +     G AAS  + + LSA E  +       
Sbjct: 63  IRLHINSPGGDVFDARAMATAIRNHPSKVVAQIDGLAASAATYVALSADEVEI---ADGG 119

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
             ++H+      G A ++   A  + KI   ++  Y +  G++ E+++  +  +   +A 
Sbjct: 120 FFMIHRAWTLAMGNAGELRDTANLLDKIDASISADYQRKTGESAEQIDAWMGAETWFTAQ 179

Query: 194 EACDWGVVDKV 204
           EA D G VD++
Sbjct: 180 EALDHGFVDRI 190


>gi|251797382|ref|YP_003012113.1| peptidase S14 ClpP [Paenibacillus sp. JDR-2]
 gi|247545008|gb|ACT02027.1| peptidase S14 ClpP [Paenibacillus sp. JDR-2]
          Length = 247

 Score = 39.7 bits (91), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 75/176 (42%), Gaps = 22/176 (12%)

Query: 47  VTGQIEDHMATL----------ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           + GQ+E H+             +  QL+  E  +  + I + +N+ GG V AG+AI + +
Sbjct: 49  IIGQVEGHIVLPPQNKTTKYEHLIPQLVAAEQNSKIEGILIVLNTVGGDVEAGLAIAEMI 108

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQ 156
             +  P  T  +G   S+G  +  AG   M F    A + +H      +G    + +  +
Sbjct: 109 SSLSKPTVTLVLGGGHSIGVPIAVAGN--MSFIAATATMTIHPIR--LNGLVIGVPQTFE 164

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEV--------EKTLDRDHIMSASEACDWGVVDKV 204
            + K++ R+ +    +   T E+         E T D    +  S+A  +G++D V
Sbjct: 165 YLDKMQERILKFVTMHSNVTEEKFKELMFKTGELTRDIGTTVIGSDAVKYGLIDAV 220


>gi|257884250|ref|ZP_05663903.1| ClpP protease [Enterococcus faecium 1,231,501]
 gi|257820088|gb|EEV47236.1| ClpP protease [Enterococcus faecium 1,231,501]
          Length = 235

 Score = 39.7 bits (91), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 64/132 (48%), Gaps = 2/132 (1%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           + + INS GG V AG  IY  ++  +  ++   +G AAS  S++  AG   +  + P A+
Sbjct: 41  LEVVINSGGGDVYAGSEIYTALRAYQGDVTVKIVGIAASAASVIAMAG-NTIEIS-PTAQ 98

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++H  S   +G    +   A+ +      +   Y+   G    E+ + ++ +  ++A +
Sbjct: 99  IMIHNVSSAAAGDHRTLAHEAEVLKNYNSSIANAYIAKTGIEEAELLELMNHETWLTAEQ 158

Query: 195 ACDWGVVDKVLM 206
           A + G  DKV+ 
Sbjct: 159 AVENGFADKVMF 170


>gi|237747841|ref|ZP_04578321.1| ClpP protease [Oxalobacter formigenes OXCC13]
 gi|229379203|gb|EEO29294.1| ClpP protease [Oxalobacter formigenes OXCC13]
          Length = 277

 Score = 39.7 bits (91), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 60/126 (47%), Gaps = 2/126 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I + INSPGG    G+AIY+ ++  K  ++   +  AAS  S++  AG++ +      A
Sbjct: 75  DIVVDINSPGGNFFEGVAIYNQLREHKGKVTCRVLSLAASAASVIAMAGDEILMG--EGA 132

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H       G   D+   +  +      +  +Y    G   + V + +D++  +SA 
Sbjct: 133 FLMIHNAWAVAVGNRHDLAEASALMTPFDDAMASLYASRSGLDKKFVSEMMDKETWLSAD 192

Query: 194 EACDWG 199
           +A + G
Sbjct: 193 QAIEDG 198


>gi|304389877|ref|ZP_07371836.1| ATP-dependent Clp protease proteolytic subunit [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|304327053|gb|EFL94292.1| ATP-dependent Clp protease proteolytic subunit [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
          Length = 221

 Score = 39.7 bits (91), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 4/165 (2%)

Query: 43  RIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           R++ ++G I  E      +   +   E       +++++NSPGG V A   IY+ M    
Sbjct: 23  RVLRISGTIAEESWFDDDVTPSIFASELNAGSGPVTIWLNSPGGDVVAAAQIYN-MLIDY 81

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
           P   T  +   A+  + +++     +  + P + +++H P+    G   ++ R    +  
Sbjct: 82  PSHVTVNIDGIAASAASVIAMAASTVAMS-PVSMLMIHNPATMAVGDKDELARAMSMLDS 140

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           +K  +   Y +  G +  ++ K +D +  M A  A D G  D++L
Sbjct: 141 VKESILNAYQEKTGMSRAKLSKLMDAETWMDARAAIDMGFADELL 185


>gi|260579082|ref|ZP_05846980.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Corynebacterium jeikeium ATCC 43734]
 gi|258602767|gb|EEW16046.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Corynebacterium jeikeium ATCC 43734]
          Length = 255

 Score = 39.7 bits (91), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 64/133 (48%), Gaps = 4/133 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM-GQAASMGSLLLSAGEKGMRFALPN 132
           +++++INSPGG V A   IY+ M    P     C+ G AAS  S++  AGE  +    P 
Sbjct: 32  DVTVWINSPGGDVVAAAQIYN-MLLDYPGHVKVCIDGIAASAASVIAMAGE--VVSMSPV 88

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           + +++H P+    G A ++ R    +  +K  +   Y    G +  ++ + +D++  M A
Sbjct: 89  SMLMIHNPATLAVGDADELGRAIDMLAAVKESIINAYELKTGMSRAKLARLMDQETWMDA 148

Query: 193 SEACDWGVVDKVL 205
             A   G  D  L
Sbjct: 149 RAAIAMGFADDYL 161


>gi|30316458|gb|AAP31400.1| hypothetical protein [Pseudomonas putida]
          Length = 183

 Score = 39.7 bits (91), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 11/137 (8%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           + L I + GG  + G  +Y+ ++ +   + T  +G   SMG++L  AGE+  R A   ++
Sbjct: 35  LQLNIATMGGECSYGFTLYNFLRALPVAVHTHNLGTVESMGNILFLAGER--RTACSFSK 92

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD-------RD 187
            L H       G   D  R A+  + +   L E+Y +   +  E   + LD         
Sbjct: 93  FLFHPFHWTLHGSV-DHARMAEYAMSLDYDL-ELYAQIVAERTEGAAQVLDVPRYLMAHP 150

Query: 188 HIMSASEACDWGVVDKV 204
            I+S  EA + G++  V
Sbjct: 151 RILSPREALENGMIHSV 167


>gi|73658420|emb|CAI99002.1| ATP-dependent protease, catalytic subunit [Arabidopsis thaliana]
 gi|73658422|emb|CAI99003.1| ATP-dependent protease, catalytic subunit [Arabidopsis thaliana]
          Length = 63

 Score = 39.7 bits (91), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 35/61 (57%)

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
           +  Q  +    A++++K++  +  +YV+  GK    + + ++RD  MSA+EA   G+VD 
Sbjct: 1   YEAQTGEFILEAEELLKLRETITRVYVQRTGKPIWVISEDMERDVFMSATEAQAHGIVDL 60

Query: 204 V 204
           V
Sbjct: 61  V 61


>gi|238917241|ref|YP_002930758.1| ATP-dependent Clp protease, protease subunit [Eubacterium eligens
           ATCC 27750]
 gi|238872601|gb|ACR72311.1| ATP-dependent Clp protease, protease subunit [Eubacterium eligens
           ATCC 27750]
          Length = 236

 Score = 39.7 bits (91), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 90/203 (44%), Gaps = 24/203 (11%)

Query: 24  EQTNRGERSYDIYSRLLKE---RIVFVTGQIEDH-------MATL---ICAQLLFLEAEN 70
           E++N G  + D     + +   +++ + G+IE H        AT    +  +L  +E + 
Sbjct: 22  EKSNNGNTADDYKDGAVTKNALQVITIIGEIEGHDNLPATSKATKYEHMLPKLAEIEMDK 81

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
             K +   +N+ GG V+AG+A+ + +  +K P  +  +G + S+G  L  A      F +
Sbjct: 82  DIKGVLFIMNTVGGDVSAGLALAEMIASMKKPTVSLIIGDSHSIGVPL--AVSTDYSFIV 139

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           P A +++H      +G    +++      +I  R+      +   + E VEK +    + 
Sbjct: 140 PTATMIIHPVR--MNGTLIGVQQTYDYFERISDRITSFIATHSNVSKERVEKMM----VD 193

Query: 191 SASEACDWGVVDKVLMSRIDIEE 213
           +   + D G    VL+ R  +EE
Sbjct: 194 TTQLSKDLGT---VLVGRQAVEE 213


>gi|222083135|ref|YP_002542500.1| hypothetical protein Arad_9986 [Agrobacterium radiobacter K84]
 gi|221727814|gb|ACM30903.1| hypothetical protein Arad_9986 [Agrobacterium radiobacter K84]
          Length = 295

 Score = 39.7 bits (91), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 73/164 (44%), Gaps = 7/164 (4%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
           ++ + QI+D     +   L+ L ++   K I L INS GG +++G+++Y  +  +   I+
Sbjct: 115 LYFSQQIDDKSTLELTGGLINLRSQG-YKTIYLMINSAGGDISSGISLYHLLCSLDVTIN 173

Query: 105 TFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQ---ASDIERHAQDIVKI 161
           T+ +    S   LL  AG++  R A   +    H     F+ +     +I      +   
Sbjct: 174 TYAISNVESAAILLFLAGKE--RVANKESIFAFHSGRLSFNNEKLTPDEINERYTALQND 231

Query: 162 KRRLNEIYVKNCGKTYEEVEKTLDRD-HIMSASEACDWGVVDKV 204
             R+ EIY +    + ++    L      + ASEA + G+  ++
Sbjct: 232 DDRMKEIYKERLSISDKQYGDLLGSQLRFVRASEALNIGLATRI 275


>gi|167039898|ref|YP_001662883.1| peptidase S14, ClpP [Thermoanaerobacter sp. X514]
 gi|300915295|ref|ZP_07132609.1| peptidase S14 ClpP [Thermoanaerobacter sp. X561]
 gi|307724778|ref|YP_003904529.1| peptidase S14 ClpP [Thermoanaerobacter sp. X513]
 gi|166854138|gb|ABY92547.1| peptidase S14, ClpP [Thermoanaerobacter sp. X514]
 gi|300888571|gb|EFK83719.1| peptidase S14 ClpP [Thermoanaerobacter sp. X561]
 gi|307581839|gb|ADN55238.1| peptidase S14 ClpP [Thermoanaerobacter sp. X513]
          Length = 226

 Score = 39.7 bits (91), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 66/132 (50%), Gaps = 2/132 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I ++INSPGG   A   IY+ +   K  ++    G AAS  S++  AG + +    P +
Sbjct: 49  DIVVWINSPGGDCIAASQIYNMLMDYKGNVTVKIDGIAASAASVIAMAGTEVL--MSPTS 106

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H P     G + ++++  Q + ++K  +   Y    G +   +   +D +  ++A+
Sbjct: 107 LMMIHNPFTIAIGDSEEMQKAIQMLDEVKESIINAYELKTGLSRTRLSHLMDAETWLNAN 166

Query: 194 EACDWGVVDKVL 205
           +A + G  D ++
Sbjct: 167 KAVELGFADDIM 178


>gi|110633689|ref|YP_673897.1| peptidase S14, ClpP [Mesorhizobium sp. BNC1]
 gi|110284673|gb|ABG62732.1| peptidase S14, ClpP [Chelativorans sp. BNC1]
          Length = 234

 Score = 39.7 bits (91), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 77/165 (46%), Gaps = 11/165 (6%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQ-KEISLYINSPGGVVTAGMAIYDTMQFIKPPI 103
           VF  G++ +     + + L  L +E+   + I LYINSPGG + +  A Y  ++    P+
Sbjct: 43  VFFVGEVTERKVAELVSVLDRLNSEHKALQSIYLYINSPGGDMDSAQAAYWAIKSSPIPV 102

Query: 104 STFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKR 163
               +   AS+ +++     +  R A PN   +L +P+     + S    H +   ++ +
Sbjct: 103 IAVNISTVASVAAVMFCGAAE--RAAFPNTYFIL-KPASVTLPEMSMQPVHFELSRELLK 159

Query: 164 RLNEIY---VKNCGK-TYEEVEKTL---DRDHIMSASEACDWGVV 201
             NE++    + C   + +E+   +   D   ++ ASEA + G++
Sbjct: 160 SYNEVFESVYRECTSLSADEISAVIESEDNRLLVRASEAREKGII 204


>gi|329295807|ref|ZP_08253143.1| peptidase S14 ClpP [Plautia stali symbiont]
          Length = 268

 Score = 39.7 bits (91), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 66/133 (49%), Gaps = 2/133 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K+I++ INSPGG +  G+ I++ ++     ++   +G AAS  S++  +G++ ++    +
Sbjct: 57  KDITVNINSPGGDLFEGLTIFNQLREYAGKVTVKILGLAASAASIIAMSGDE-IQIGR-S 114

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A +++H   G   G   D    A+ +      + ++YV   G   + V   +D +  ++ 
Sbjct: 115 AFLMIHNTWGMAVGNRHDFADIAEKMTPFDFAMRDVYVARTGMDEKTVTAMMDNETWING 174

Query: 193 SEACDWGVVDKVL 205
            EA + G  D  L
Sbjct: 175 GEAVEKGFADAFL 187


>gi|288556926|ref|YP_003428861.1| hypothetical protein BpOF4_19650 [Bacillus pseudofirmus OF4]
 gi|288548086|gb|ADC51969.1| hypothetical protein BpOF4_19650 [Bacillus pseudofirmus OF4]
          Length = 249

 Score = 39.7 bits (91), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 81/177 (45%), Gaps = 24/177 (13%)

Query: 47  VTGQIEDHMATL----------ICAQLLFLEAENPQKE-ISLYINSPGGVVTAGMAIYDT 95
           + GQIE HM             I  QL+ +E +NP+ E + L +N+ GG V AG+AI + 
Sbjct: 50  IIGQIEGHMQLPPQNKTTKYEHIIPQLVAVE-QNPKIEGLLLILNTVGGDVEAGLAISEM 108

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           +  +  P  T  +G   S+G  +  A      F    A + +H      +G    + +  
Sbjct: 109 VASMSKPSVTLVLGGGHSIGVPIAVAAN--YSFIAKTATMTIHPVR--LTGLVIGVPQTF 164

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEK------TLDRD--HIMSASEACDWGVVDKV 204
           + + K++ R+     +  G + E+ ++       L RD    +  ++A ++G++D+V
Sbjct: 165 EYLDKMQERVISFVTQQSGISEEKFKELMLSKGNLTRDIGTNVVGTDAVEYGLIDEV 221


>gi|149010630|ref|ZP_01832001.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae SP19-BS75]
 gi|149013225|ref|ZP_01834011.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           pneumoniae SP19-BS75]
 gi|147762976|gb|EDK69921.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           pneumoniae SP19-BS75]
 gi|147765111|gb|EDK72040.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae SP19-BS75]
          Length = 61

 Score = 39.7 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 33/51 (64%)

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+ ++K +  L +I  +N G++ E+V    +RD+ MSA E  ++G +D+++
Sbjct: 5   AEHLLKTRNTLEKILAENSGQSMEKVHADAERDNWMSAQETLEYGFIDEIM 55


>gi|302874673|ref|YP_003843306.1| peptidase S49 [Clostridium cellulovorans 743B]
 gi|307690713|ref|ZP_07633159.1| peptidase S49 [Clostridium cellulovorans 743B]
 gi|302577530|gb|ADL51542.1| peptidase S49 [Clostridium cellulovorans 743B]
          Length = 274

 Score = 39.3 bits (90), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 85/186 (45%), Gaps = 26/186 (13%)

Query: 40  LKERIVF--VTGQIEDHMAT----------LICAQLLFLEAENPQKEISLYINSPGGVVT 87
           ++ERI    + GQIE HM             I  Q++ +E  +  +   + +N+ GG V 
Sbjct: 28  IEERIAILPIIGQIEGHMVAPPQHKTTKYEHIIPQVVGIETNDKIEGALIILNTIGGDVE 87

Query: 88  AGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH--QPSGGFS 145
           AG+AI + +  I  P  +  +G   S+G  L +A +    +   +A +++H  + +G   
Sbjct: 88  AGLAIAEMITSISKPTVSLVIGGGHSIGVPLATAAK--YSYITTSATMIVHPIRMNGTVI 145

Query: 146 G--QASDI-----ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           G  Q  D      ER  + +V+  +   + ++    KT E +    D   I+   +A + 
Sbjct: 146 GVPQTFDYFNKMQERIVEFVVRTSKVQRDSFISMMMKTDELLN---DMGTILIGKQAVEK 202

Query: 199 GVVDKV 204
           G++D+V
Sbjct: 203 GLIDEV 208


>gi|327461145|gb|EGF07478.1| peptidase s14, clpp [Streptococcus sanguinis SK1057]
          Length = 227

 Score = 39.3 bits (90), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 76/166 (45%), Gaps = 6/166 (3%)

Query: 43  RIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           R++ + G I  E  +   +  Q+   E  +    ++L+INSPGG V A   IY+ +   K
Sbjct: 14  RVLHLNGTIASESWVDDDVTPQIFKNELMSGSGPLTLWINSPGGDVFAAAQIYNMLMDYK 73

Query: 101 PPISTFCMGQAASMGSLLLSAGEK-GMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
             ++    G AAS  S++  AG    M    P A +++H P     G + ++E+    + 
Sbjct: 74  DDVTVNIDGIAASAASVIAMAGTTVNMS---PVAMMMIHNPMTVAIGDSKEMEKAIAMLS 130

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           ++K  +   Y      +  ++   +D +   +A +A + G  D +L
Sbjct: 131 EVKESILNAYEIKTSLSRVQLSHLMDAESWFNAKKALELGFADSIL 176


>gi|300933367|ref|ZP_07148623.1| peptidase S14 ClpP [Corynebacterium resistens DSM 45100]
          Length = 277

 Score = 39.3 bits (90), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 6/166 (3%)

Query: 43  RIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           R++ + G I  E      I   L   E      +++++INSPGG V A   IY+ M    
Sbjct: 24  RVLRINGVIAEESWFDDDITPALFASELAAGSGDVTVWINSPGGDVVAAAQIYN-MLIDY 82

Query: 101 PPISTFCM-GQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
           P     C+ G AAS  S++  AGE  +    P + +++H P+    G A ++ R    + 
Sbjct: 83  PGHVRVCIDGIAASAASVIAMAGE--VVAMSPVSMLMIHNPATLAVGDADELGRAIDMLA 140

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            +K  +   Y    G +  ++ + +D++  M A  A   G  D  L
Sbjct: 141 AVKESIINAYELKTGMSRAKLARLMDQETWMDARAAIAMGFADDYL 186


>gi|331091074|ref|ZP_08339916.1| hypothetical protein HMPREF9477_00559 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405296|gb|EGG84832.1| hypothetical protein HMPREF9477_00559 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 226

 Score = 39.3 bits (90), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 36/182 (19%), Positives = 85/182 (46%), Gaps = 26/182 (14%)

Query: 43  RIVFVTGQIEDHMAT----------LICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI 92
           +++ + G+IE H A            +  +L  +E     + + + +N+ GG V AG+AI
Sbjct: 30  QLLTIIGEIEGHEAVSGNTKATKYEHLLPKLAEVEDSEEIEGLLILLNTLGGDVEAGLAI 89

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH--QPSGGFSGQASD 150
            + +  +  P  +  +G + S+G  L  + +    F +P+  +++H  + SG F G    
Sbjct: 90  AEMIASLSKPSVSLVLGGSHSIGGPLAVSAD--YSFIVPSGTMVIHPVRSSGTFIG---- 143

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDHIMSASEACDWGVVD 202
           + +  +++ + + R+ +   ++   + E +E+ +        D   ++   EA   G++D
Sbjct: 144 VMQSYRNMERTQNRITKFISEHANISQERIEELMLDPTQLVKDVGTMLEGEEAVKEGLID 203

Query: 203 KV 204
           +V
Sbjct: 204 EV 205


>gi|227534657|ref|ZP_03964706.1| ClpP family protease [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|227187704|gb|EEI67771.1| ClpP family protease [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
          Length = 228

 Score = 39.3 bits (90), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 27/132 (20%), Positives = 65/132 (49%), Gaps = 2/132 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +++L I S GG V     I + ++  +  ++   +  A S  +++ + G   ++ A P A
Sbjct: 42  DVTLEIASDGGEVDPATEICNALRSYRGNVTAKIVSNAYSAATIV-AMGANKVQMA-PGA 99

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           ++++H+ S   SG + +++  +  +      +  IY    GK  ++    +D++  + A 
Sbjct: 100 KMMIHRASSDASGNSREMDAASGMLKTTDSAIANIYGAKTGKPADDFLALMDKETWLDAD 159

Query: 194 EACDWGVVDKVL 205
           +A + G+ D+ L
Sbjct: 160 QAVELGLADEKL 171


>gi|24214825|ref|NP_712306.1| periplasmic serine protease [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45657659|ref|YP_001745.1| endopeptidase IV [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|24195838|gb|AAN49324.1| periplasmic serine protease [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45600899|gb|AAS70382.1| signal peptide peptidase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 328

 Score = 39.3 bits (90), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 85/192 (44%), Gaps = 35/192 (18%)

Query: 46  FVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY-DTMQF---IKP 101
           F  GQ ED +   +  QL   E +   K + L INSPGG VTA   IY + +QF    K 
Sbjct: 67  FFGGQ-EDSILVEVKKQLELAELDPEIKAVILKINSPGGSVTASDIIYREILQFKTKKKI 125

Query: 102 PISTFCMGQAA------SMGSLLLSA------GEKGMRFALPNARILLHQ--------PS 141
           P+ +  M  AA      SM + LL A      G  G+  +  N +  L +         S
Sbjct: 126 PVVSLFMDTAASGAYYISMATDLLIAHPTSVTGSIGVILSGINVKEGLDKLGIKDQSIRS 185

Query: 142 GGFSGQASDIERHAQDIVKIKRRL-NEIYVK--------NCGKTYEEVEKTLDRDHIMSA 192
           GG     S +E  + +  K+ + + ++++ K          GK   E+ K  D   I +A
Sbjct: 186 GGNKTIGSPLEELSPEQRKLLQSIVDDLFEKFFDIVKKGRPGKNPSELRKVAD-GRIFTA 244

Query: 193 SEACDWGVVDKV 204
           S+A   G++DK+
Sbjct: 245 SQALQHGLIDKI 256


>gi|222107095|ref|YP_002547886.1| ClpP-type protease [Agrobacterium vitis S4]
 gi|221738274|gb|ACM39170.1| ClpP-type protease [Agrobacterium vitis S4]
          Length = 284

 Score = 39.3 bits (90), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 63/133 (47%), Gaps = 2/133 (1%)

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            KE+ + +NSPGG +  G+AIY+ ++     ++   +G AAS  S++  A ++ +   L 
Sbjct: 75  NKEVIVQVNSPGGDMFEGIAIYNMLRAHPGKVTVNVLGWAASAASIIAMAADE-IVMGL- 132

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
            + +++H   G   G   D+             L +IY    G   +++   +D +  MS
Sbjct: 133 GSFMMVHNAWGAVIGNQHDLRTATDLFAGFDSALADIYEARTGAKRKDIVALMDAETFMS 192

Query: 192 ASEACDWGVVDKV 204
            S+A   G  D+V
Sbjct: 193 PSDAVKNGFADRV 205


>gi|325687744|gb|EGD29765.1| peptidase s14, clpp [Streptococcus sanguinis SK72]
          Length = 232

 Score = 39.3 bits (90), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 76/166 (45%), Gaps = 6/166 (3%)

Query: 43  RIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           R++ + G I  E  +   +  Q+   E  +    ++L+INSPGG V A   IY+ +   K
Sbjct: 19  RVLHLNGTIASESWVDDDVTPQIFKNELMSGTGPLTLWINSPGGDVFAAAQIYNMLMDYK 78

Query: 101 PPISTFCMGQAASMGSLLLSAGEK-GMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
             ++    G AAS  S++  AG    M    P A +++H P     G + ++E+    + 
Sbjct: 79  DDVTVNIDGIAASAASVIAMAGTTVNMS---PVAMMMIHNPMTVAIGDSKEMEKAIAMLS 135

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           ++K  +   Y      +  ++   +D +   +A +A + G  D +L
Sbjct: 136 EVKESILNAYEIKTSLSRVQLSHLMDAESWFNAKKALELGFADSIL 181


>gi|311069140|ref|YP_003974063.1| putative membrane bound hydrolase [Bacillus atrophaeus 1942]
 gi|310869657|gb|ADP33132.1| putative membrane bound hydrolase [Bacillus atrophaeus 1942]
          Length = 438

 Score = 39.3 bits (90), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 3/74 (4%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAE-NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           ++ V   +E  +AT +     F EAE N  K I L IN+PGG V + + I DT+     P
Sbjct: 36  VIPVEKTVEKGLATFLARA--FQEAEDNHAKHIILNINTPGGAVESALEIADTINHADIP 93

Query: 103 ISTFCMGQAASMGS 116
           ++ +   +A S G+
Sbjct: 94  VTAYVNKRALSAGA 107


>gi|260893129|ref|YP_003239226.1| peptidase S14 ClpP [Ammonifex degensii KC4]
 gi|260865270|gb|ACX52376.1| peptidase S14 ClpP [Ammonifex degensii KC4]
          Length = 234

 Score = 39.3 bits (90), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 78/177 (44%), Gaps = 24/177 (13%)

Query: 47  VTGQIEDHMATL----------ICAQLLFLEAENPQKE-ISLYINSPGGVVTAGMAIYDT 95
           + GQIE H+             +  QL+ LE ++P+ E I + +N+ GG V AG+AI + 
Sbjct: 37  IVGQIEGHLVLPPQNKTTKYEHVLPQLVALE-QHPEIEGILVILNTVGGDVEAGLAIAEM 95

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           +  +  P  +  +G   S+G  +  A      F    A + +H      +GQ   + +  
Sbjct: 96  LASLSKPTVSLVLGGGHSIGVPIAVAARYS--FITETASMTIHPIR--LTGQVIGVPQTW 151

Query: 156 QDIVKIKRRLNEIYVKNCG--------KTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           + + K++ R+ +  V++            +   E   D   ++   EA D G++D+V
Sbjct: 152 EYLEKMQDRVIKFVVRHSRIEEWRFRELMFRSGELARDIGTVLVGREAVDCGLIDEV 208


>gi|257439336|ref|ZP_05615091.1| ClpP protease family protein [Faecalibacterium prausnitzii A2-165]
 gi|283798244|ref|ZP_06347397.1| ClpP protease family protein [Clostridium sp. M62/1]
 gi|257198211|gb|EEU96495.1| ClpP protease family protein [Faecalibacterium prausnitzii A2-165]
 gi|291074025|gb|EFE11389.1| ClpP protease family protein [Clostridium sp. M62/1]
          Length = 416

 Score = 38.9 bits (89), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 43/195 (22%), Positives = 87/195 (44%), Gaps = 15/195 (7%)

Query: 26  TNRGERSYDIYSRLLKERIV-FVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG 84
           T   E    +Y  ++ ++ V + TG+ E  +       +  L A   +  I++ +NS GG
Sbjct: 30  TGDDEGEITLYGDVMSQQPVDWWTGEPEPGLFITPEGFMEDLAAVKDKGHITVKLNSCGG 89

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
            +  G+AI++ ++ +   ++    G AAS  S+++ AG+    +  P + I++H    G 
Sbjct: 90  DLYTGIAIHNALKALSGEVNVIVEGIAASAASVIMCAGDTVTVY--PGSLIMIH----GV 143

Query: 145 SGQASDIERHAQDIVKI-------KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           S    D   + QD+ ++       +R + EIY    G   + +   + ++   +  EA +
Sbjct: 144 SVMLWDY-MNMQDMKQLMKGMDASERAVAEIYNSKTGIEVDTLRSMMTKETWFTGREALE 202

Query: 198 WGVVDKVLMSRIDIE 212
            G  D +     D E
Sbjct: 203 KGFADAIKEDEDDPE 217


>gi|260587185|ref|ZP_05853098.1| ClpP protease family protein [Blautia hansenii DSM 20583]
 gi|260542380|gb|EEX22949.1| ClpP protease family protein [Blautia hansenii DSM 20583]
          Length = 416

 Score = 38.9 bits (89), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 43/195 (22%), Positives = 87/195 (44%), Gaps = 15/195 (7%)

Query: 26  TNRGERSYDIYSRLLKERIV-FVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG 84
           T   E    +Y  ++ ++ V + TG+ E  +       +  L A   +  I++ +NS GG
Sbjct: 30  TGDDEGEITLYGDVMSQQPVDWWTGEPEPGLFITPEGFMEDLAAVKDKGHITVKLNSCGG 89

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
            +  G+AI++ ++ +   ++    G AAS  S+++ AG+    +  P + I++H    G 
Sbjct: 90  DLYTGIAIHNALKALSGEVNVIVEGIAASAASVIMCAGDTVTVY--PGSLIMIH----GV 143

Query: 145 SGQASDIERHAQDIVKI-------KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           S    D   + QD+ ++       +R + EIY    G   + +   + ++   +  EA +
Sbjct: 144 SVMLWDY-MNMQDMKQLMKGMDASERAVAEIYNSKTGIEVDTLRSMMTKETWFTGREALE 202

Query: 198 WGVVDKVLMSRIDIE 212
            G  D +     D E
Sbjct: 203 KGFADAIKEDEDDPE 217


>gi|319892557|ref|YP_004149432.1| Prophage Clp protease-like protein [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162253|gb|ADV05796.1| Prophage Clp protease-like protein [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 240

 Score = 38.9 bits (89), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 66/131 (50%), Gaps = 2/131 (1%)

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +++I + INS GG V +G  IY  ++  +  +     G AAS  S++  AG+  +  + P
Sbjct: 39  KEDIEVIINSGGGDVFSGSEIYTALKEYQGKVIVKVYGVAASAASVVAMAGDH-IEMS-P 96

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
            A++++H  S    G   ++   ++ +    + +   YVK  G + EE+   ++ +  M+
Sbjct: 97  TAQMMIHNASTLAYGDNRNMNSASKMLSSTDKGIANAYVKKTGMSEEEILNLMNDETWMN 156

Query: 192 ASEACDWGVVD 202
           A EA + G  D
Sbjct: 157 AQEAVEKGFAD 167


>gi|298290031|ref|YP_003691970.1| peptidase S14 ClpP [Starkeya novella DSM 506]
 gi|296926542|gb|ADH87351.1| peptidase S14 ClpP [Starkeya novella DSM 506]
          Length = 293

 Score = 38.9 bits (89), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 73/145 (50%), Gaps = 3/145 (2%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           + + + INSPGG +  G+AI++ ++     I+   MG AAS  S++  AG+     A   
Sbjct: 85  RPVEVQINSPGGDMFEGIAIFNVLREHPQDITVKVMGMAASAASIIAMAGDHVEMGAA-- 142

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           + +++H       G   D+   A+ +    + + ++Y     +   ++ K +D +  MS 
Sbjct: 143 SFLMIHNCWVLAIGNRHDMRETAEWLEPFDQAMVDLYAARTSQKPADIAKWMDAETYMSG 202

Query: 193 SEACDWGVVDKVLMS-RIDIEEKSK 216
           S+A + G  D +L S +I  +EK++
Sbjct: 203 SQAVERGFADALLASDQITTDEKAQ 227


>gi|154502755|ref|ZP_02039815.1| hypothetical protein RUMGNA_00569 [Ruminococcus gnavus ATCC 29149]
 gi|153796638|gb|EDN79058.1| hypothetical protein RUMGNA_00569 [Ruminococcus gnavus ATCC 29149]
          Length = 229

 Score = 38.9 bits (89), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 37/182 (20%), Positives = 84/182 (46%), Gaps = 26/182 (14%)

Query: 43  RIVFVTGQIEDHMATL----------ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI 92
           +++ + G+IE H A            +  +L  +E ++    + + +N+ GG V AG+AI
Sbjct: 35  QLLTIIGEIEGHEAVSGNTKATKYEHLIPRLAEVEDDDEVDGVLILLNTLGGDVEAGLAI 94

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH--QPSGGFSGQASD 150
            + +  +  P  +  +G + S+G  L  + +    F +P+  +++H  + SG F G    
Sbjct: 95  AEMIASLSKPTVSLVLGGSHSIGGPLAVSAD--YSFIVPSGTMIVHPVRSSGMFIG---- 148

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDHIMSASEACDWGVVD 202
           + +  +++ K + R+      +   T E +E+ +        D   ++   +A   G++D
Sbjct: 149 VIQSYRNMEKTQDRITRFIAAHSQITKERLEELMLDSTQLVKDVGTMLEGEDAVREGMID 208

Query: 203 KV 204
           +V
Sbjct: 209 EV 210


>gi|227543567|ref|ZP_03973616.1| peptidase S14, ClpP [Lactobacillus reuteri CF48-3A]
 gi|300909404|ref|ZP_07126865.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           reuteri SD2112]
 gi|77745343|gb|ABB02572.1| ATP-dependent Clp protease [Lactobacillus reuteri]
 gi|227186407|gb|EEI66478.1| peptidase S14, ClpP [Lactobacillus reuteri CF48-3A]
 gi|300893269|gb|EFK86628.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           reuteri SD2112]
          Length = 220

 Score = 38.9 bits (89), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 4/132 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL-PNA 133
           I +++NSPGG   A   IY TM    P  +   +  A    S        G + ++ P A
Sbjct: 48  IDVWLNSPGGDCVAASQIY-TMLMSYP--NDVNVKIAGIAASAASVIAMAGTKVSMAPTA 104

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H P    +G  SD+ +  Q + + K  +   Y    G    ++   +D    M+ +
Sbjct: 105 LMMIHNPLTIAAGNRSDMAKAIQQLDETKESIINAYEIKTGLPRGKIAALMDEQTWMNPN 164

Query: 194 EACDWGVVDKVL 205
           +A + G  D+VL
Sbjct: 165 KAIELGFADEVL 176


>gi|18314240|ref|NP_560907.1| protease IV, conjectural [Pyrobaculum aerophilum str. IM2]
 gi|18161836|gb|AAL65089.1| protease IV, conjectural [Pyrobaculum aerophilum str. IM2]
          Length = 608

 Score = 38.9 bits (89), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 69/180 (38%), Gaps = 21/180 (11%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPI 103
           IV V   I D+    +   +  L+ +N    + L INSPGG V A   +Y T++ +   +
Sbjct: 89  IVPVDQPIFDYYVDFLIKYVKKLQFDNKTAGVILLINSPGGAVGATERLYSTIKGLNKTV 148

Query: 104 STFCMGQAASMGSLLLSAGEKGMRFALPNARI--------------LLHQP-----SGGF 144
                G AAS      +A   G  +A P++ +              L+  P     +G F
Sbjct: 149 YAVVAGLAAS--GAYYTAVAAGRIYATPSSWVGSIGVVALLWPDEYLIDLPDYIYTTGPF 206

Query: 145 SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
                D+     DI K +       +K      +   +  +   I +A  A   G++DK+
Sbjct: 207 KYYGMDLTEFYNDIEKTRANFVAAVLKGRAGRLKADPEVFETAKIFNAETALRLGLIDKI 266


>gi|18977955|ref|NP_579312.1| protease IV [Pyrococcus furiosus DSM 3638]
 gi|18893729|gb|AAL81707.1| protease iv [Pyrococcus furiosus DSM 3638]
          Length = 329

 Score = 38.9 bits (89), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 4/84 (4%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ---FIK 100
           IV + G I+++MA  +  +L  ++++   + + L+I+SPGG +    AIY  ++   +IK
Sbjct: 89  IVPIFGLIDENMALEVVKKLEVIKSDPSIRGVLLWIDSPGGYIGPVRAIYKEVKELAYIK 148

Query: 101 PPISTFCMGQAASMGSLLLSAGEK 124
            PI  +  G A S G  +    +K
Sbjct: 149 -PIVAYISGYATSGGYYIACGADK 171


>gi|257468552|ref|ZP_05632646.1| Clp protease [Fusobacterium ulcerans ATCC 49185]
          Length = 246

 Score = 38.9 bits (89), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 65/132 (49%), Gaps = 6/132 (4%)

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AE   KE+ ++INS GG V AG+AI + ++  K     +  G AAS  S++    ++   
Sbjct: 53  AEANNKEVHVHINSYGGEVFAGVAICNMLKNYKGKTVAYVDGLAASAASIIAFGCDE--- 109

Query: 128 FALP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC--GKTYEEVEKTL 184
             +P NA +++H+ S G  G A D+    + + K++  +   Y +    G T E++   +
Sbjct: 110 VIIPNNAYLMIHRVSCGIWGNADDLRTQIEVLEKLEDGIANTYEEKAVEGVTREDILNLM 169

Query: 185 DRDHIMSASEAC 196
             +   +  EA 
Sbjct: 170 KEETWFTGEEAA 181


>gi|167630380|ref|YP_001680879.1| peptidase s14, clpp [Heliobacterium modesticaldum Ice1]
 gi|167593120|gb|ABZ84868.1| peptidase s14, clpp [Heliobacterium modesticaldum Ice1]
          Length = 255

 Score = 38.5 bits (88), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 75/176 (42%), Gaps = 22/176 (12%)

Query: 47  VTGQIEDHMATL----------ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           + GQ+E HM             I  QL+ LE     + + L +N+ GG V AG+AI + +
Sbjct: 59  IVGQVEGHMILPPQNKTTKYEHILPQLVALEQSKDIEGVLLILNTVGGDVEAGLAIAEMV 118

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQ 156
             +  P  +  +G   S+G  +  + +  M  +   A + +H      +G    +    +
Sbjct: 119 ASLSKPSVSIVLGGGHSIGVPIAVSADYSMIAS--TATMTIHPIR--LTGLVIGVPATFE 174

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEV--------EKTLDRDHIMSASEACDWGVVDKV 204
            + K++ R+     +N   T E+         E T D   ++   EA ++G++D V
Sbjct: 175 YLEKMQDRVVAFVTRNSRITPEKFKELMFKTGELTRDIGTVVVGKEAVEYGLIDAV 230


>gi|317062810|ref|ZP_07927295.1| ATP-dependent endopeptidase clp proteolytic subunit clpP
           [Fusobacterium ulcerans ATCC 49185]
 gi|313688486|gb|EFS25321.1| ATP-dependent endopeptidase clp proteolytic subunit clpP
           [Fusobacterium ulcerans ATCC 49185]
          Length = 251

 Score = 38.5 bits (88), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 65/132 (49%), Gaps = 6/132 (4%)

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AE   KE+ ++INS GG V AG+AI + ++  K     +  G AAS  S++    ++   
Sbjct: 58  AEANNKEVHVHINSYGGEVFAGVAICNMLKNYKGKTVAYVDGLAASAASIIAFGCDE--- 114

Query: 128 FALP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC--GKTYEEVEKTL 184
             +P NA +++H+ S G  G A D+    + + K++  +   Y +    G T E++   +
Sbjct: 115 VIIPNNAYLMIHRVSCGIWGNADDLRTQIEVLEKLEDGIANTYEEKAVEGVTREDILNLM 174

Query: 185 DRDHIMSASEAC 196
             +   +  EA 
Sbjct: 175 KEETWFTGEEAA 186


>gi|325278016|ref|ZP_08143542.1| Clp protease, putative [Pseudomonas sp. TJI-51]
 gi|324096845|gb|EGB95165.1| Clp protease, putative [Pseudomonas sp. TJI-51]
          Length = 183

 Score = 38.5 bits (88), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 11/137 (8%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           + L I + GG  + G  +Y+ ++ +  P+ T  +G   SMG++L  AGE   R A   ++
Sbjct: 35  LQLNIATMGGECSYGFTLYNFLRALPVPVHTHNLGTVESMGNILFLAGE--WRTACSYSK 92

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD-------RD 187
            L H       G   D  R A+  + +   L ++Y +   +  +   + LD         
Sbjct: 93  FLFHPFHWTLHGSV-DHSRMAEYTMSLDYDL-QLYAQIVAERTQGAPEVLDVPRYLMAYP 150

Query: 188 HIMSASEACDWGVVDKV 204
            I+   EA   GV+  V
Sbjct: 151 RILGPQEALQSGVIHAV 167


>gi|14251131|ref|NP_116498.1| putative ATP-dependent ClpP protein [Lactococcus phage BK5-T]
 gi|14209623|gb|AAK56806.1|AF176025_6 putative ATP-dependent ClpP protein [Lactococcus phage BK5-T]
 gi|26005527|emb|CAC80147.1| hypothetical protein [Lactococcus phage BK5-T]
          Length = 237

 Score = 38.5 bits (88), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 2/133 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           +E+ L I S GG V +   IY  ++     I     G AAS  S++  AG+  +  + P 
Sbjct: 45  EEVILNIASNGGDVFSASEIYTKLKNSNKNIVVNIEGIAASAASVIAMAGDT-VNIS-PT 102

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A++++H+   G  G A D E+ A+ +  + + +   Y    G    ++ + +  +  M+A
Sbjct: 103 AQLMIHKAMSGSQGNADDFEQEAKVLNGVDQSIAAAYELKTGMKQSDLLQLMSNETWMTA 162

Query: 193 SEACDWGVVDKVL 205
            +A D G  D ++
Sbjct: 163 QDAVDKGFADNIM 175


>gi|297572087|ref|YP_003697861.1| peptidase S14 ClpP [Arcanobacterium haemolyticum DSM 20595]
 gi|296932434|gb|ADH93242.1| peptidase S14 ClpP [Arcanobacterium haemolyticum DSM 20595]
          Length = 277

 Score = 38.5 bits (88), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 6/166 (3%)

Query: 43  RIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           R++ + G I  E      I   L   E      +++++INSPGG V A   IY+ M    
Sbjct: 24  RVLRINGVIAEESWFDDDITPALFASELAAGSGDVTVWINSPGGDVVAAAQIYN-MLIDY 82

Query: 101 PPISTFCM-GQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
           P     C+ G AAS  S++  AGE  +    P + +++H P+    G A ++ R    + 
Sbjct: 83  PGHVKVCIDGIAASAASVIAMAGE--VVAMSPVSMLMIHNPATLAVGDAEELGRVIDMLA 140

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            +K  +   Y    G +  ++ + +D++  M A  A   G  D  L
Sbjct: 141 AVKESIINAYELKTGMSRAKLARLMDQETWMDARAAIAMGFADDYL 186


>gi|160700656|ref|YP_001552336.1| gp7 [Mycobacterium phage Giles]
 gi|159136606|gb|ABW88402.1| gp7 [Mycobacterium phage Giles]
          Length = 396

 Score = 38.5 bits (88), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 2/96 (2%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           +++ +NSPGG    GMAI + +       +TF  G AAS  S++  AG++ +       R
Sbjct: 50  VNIRVNSPGGSAWDGMAIANAIIRHPAKTTTFIDGLAASAASIVAFAGDEVVVSKW--GR 107

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYV 170
            +LH       G A D+   A  +  +   +   Y 
Sbjct: 108 AMLHNAHAMVMGTADDMREVATQLDALNANMAAYYA 143


>gi|320540565|ref|ZP_08040215.1| Clp protease domain-containing protein [Serratia symbiotica str.
           Tucson]
 gi|320029496|gb|EFW11525.1| Clp protease domain-containing protein [Serratia symbiotica str.
           Tucson]
          Length = 285

 Score = 38.5 bits (88), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 2/133 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K+I++ INSPGG +  G+ I++ +      ++   +G AAS  S++  +G++ ++    +
Sbjct: 74  KDITVNINSPGGDLFEGLTIFNQLLEYAGKVTVKILGLAASAASIIAMSGDE-IQIGR-S 131

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A +++H   G   G   D    A+ +      L +IYV   G   + +   +D +  +  
Sbjct: 132 AFLMIHNTWGMAVGNRHDFADIAEKMTPFDFALRDIYVARTGMDEKTITAMMDNETWIHG 191

Query: 193 SEACDWGVVDKVL 205
            EA + G  D  L
Sbjct: 192 GEAVEKGFADAFL 204


>gi|161899095|ref|XP_001712774.1| Clp protease [Bigelowiella natans]
 gi|75756267|gb|ABA27162.1| Clp protease [Bigelowiella natans]
          Length = 237

 Score = 38.5 bits (88), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 36/187 (19%), Positives = 73/187 (39%), Gaps = 18/187 (9%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------G 84
           D+ S L +  I+F+   + +    L+  QLL+   +  +K I+  INS G          
Sbjct: 55  DVPSFLFENSIIFIGMPLTEITIELLFCQLLWQNNKKSKKYINFIINSYGSHSSYTDINN 114

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
           +  + + + D ++F     ++  +G++      L        R AL N+      P    
Sbjct: 115 IFGSYLTLIDLIEFNSYQTNSIVIGKSFGTALFLFLTSSTNKRIALENSSFSFETP--FL 172

Query: 145 SGQASDIERHAQDIVKIKRRLNEIYVK---NCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
                 +   +  I++    +N  Y+K   N    Y      L      ++ EA + G++
Sbjct: 173 YSSTRSLSNLSNSIIEFNTFIN--YMKEKFNYSLHYN--NSLLQSKRYFNSKEALEIGII 228

Query: 202 DKVLMSR 208
           D++  S+
Sbjct: 229 DEIFTSK 235


>gi|225416613|ref|ZP_03761802.1| hypothetical protein CLOSTASPAR_05837 [Clostridium asparagiforme
           DSM 15981]
 gi|225041859|gb|EEG52105.1| hypothetical protein CLOSTASPAR_05837 [Clostridium asparagiforme
           DSM 15981]
          Length = 293

 Score = 38.5 bits (88), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 88/196 (44%), Gaps = 26/196 (13%)

Query: 29  GERSYDIYSRLLKERIVFVTGQIEDH-------MAT---LICAQLLFLEAENPQKEISLY 78
           G+ + +   R  K  ++ + G++E H        AT    +  QL  +E ++    + + 
Sbjct: 86  GQMTLEENRRHRKIHLITIIGEVEGHENLSGNSKATKYDHVLPQLAQIEDDDTVDGLLVL 145

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           +N+ GG V AG+AI + +  +  P  +  +G + S+G  L  A      F +P+  +++H
Sbjct: 146 LNTSGGDVDAGLAIAEMIASLSMPTVSLVLGGSHSIGVPL--AVSTNYSFIVPSGTMMIH 203

Query: 139 --QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK--------TLDRDH 188
             + SG   G +   E  A     I+ R+      +    Y+++++        T D   
Sbjct: 204 PVRMSGMVIGSSQTYEYFAM----IEDRILNFVESHARIAYDQLKELMHNTEMLTRDLGT 259

Query: 189 IMSASEACDWGVVDKV 204
           ++   EA + G++D+V
Sbjct: 260 VLVGKEAVEAGLIDEV 275


>gi|77999991|ref|YP_358763.1| putative protease [Lactobacillus phage Lc-Nu]
 gi|37826007|gb|AAR04628.1| putative protease [Lactobacillus phage Lc-Nu]
          Length = 228

 Score = 38.5 bits (88), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 28/136 (20%), Positives = 64/136 (47%), Gaps = 2/136 (1%)

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           N   ++ L I S GG V     + + ++  K  ++   +  A S  +++ + G   ++ A
Sbjct: 38  NDGSDVVLEIASDGGEVDPATEVCNALRDYKGNVTAKIVSNAYSAATIV-AMGANKVQMA 96

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
            P A++++H+ S   SG + +++  +  +      +  +Y    GK   E    +D++  
Sbjct: 97  -PGAKMMIHRASSDASGNSHEMDAASGMLQTTDSAIASLYSAKTGKPANEFLALMDKETW 155

Query: 190 MSASEACDWGVVDKVL 205
           + A +A + G+ D+ L
Sbjct: 156 LDADDAINLGLADEKL 171


>gi|317128309|ref|YP_004094591.1| hypothetical protein Bcell_1597 [Bacillus cellulosilyticus DSM
           2522]
 gi|315473257|gb|ADU29860.1| protein of unknown function DUF107 [Bacillus cellulosilyticus DSM
           2522]
          Length = 444

 Score = 38.5 bits (88), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 12/149 (8%)

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLL-LSAGEKGMR 127
           E+    I   IN+PGG+V A   I   ++    P + F + +A S G+ + L A +  M 
Sbjct: 61  EDGADHIVFEINTPGGLVAAANEIAALIENTPTPTTAFVIDEAMSAGAYISLKADQIVM- 119

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRR--------LNEIYVKNCGKTYEE 179
             +P AR+   Q   G  G A+D + H+  +  +K          L  + + +      E
Sbjct: 120 --VPGARMGAAQVISGGDGNAADDKAHSAWLATMKAAAEGNDRDPLYALAMADPSIDLPE 177

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVLMSR 208
               +D    ++ASEA + G  + +  +R
Sbjct: 178 YRAGVDDLLSLTASEALEVGYAEAIASNR 206


>gi|167949878|ref|ZP_02536952.1| hypothetical protein Epers_26827 [Endoriftia persephone
          'Hot96_1+Hot96_2']
          Length = 52

 Score = 38.5 bits (88), Expect = 0.69,   Method: Composition-based stats.
 Identities = 16/20 (80%), Positives = 19/20 (95%)

Query: 16 LGLVPMVVEQTNRGERSYDI 35
          LGLVP+V+EQT RGERS+DI
Sbjct: 15 LGLVPIVIEQTARGERSFDI 34


>gi|225572062|ref|ZP_03780926.1| hypothetical protein RUMHYD_00356 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040497|gb|EEG50743.1| hypothetical protein RUMHYD_00356 [Blautia hydrogenotrophica DSM
           10507]
          Length = 248

 Score = 38.5 bits (88), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 84/186 (45%), Gaps = 28/186 (15%)

Query: 41  KERIVFVT--GQIEDHMAT----------LICAQLLFLEAENPQKEISLYINSPGGVVTA 88
           K RI  +T  G++E H +            +  +L  +E +     + + +N+ GG V A
Sbjct: 34  KHRIHLLTIIGEVEGHESAPNHSKTTKYEHVLPKLAMIEDDQNVDGLLVLLNTVGGDVEA 93

Query: 89  GMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH--QPSGGFSG 146
           G+AI + +  +  P  +  +G   S+G  +  + +    F +P+A +++H  + +G F G
Sbjct: 94  GLAIAEMIASLSVPTVSLVLGGGHSIGVPMAVSAD--YSFVVPSATMVIHPVRSNGMFIG 151

Query: 147 QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDHIMSASEACDW 198
            A       +++ KI+ R+      +   T + +E+ +        D   ++   +A   
Sbjct: 152 VAQTY----RNMEKIQDRITSFIAGHSHITQQRLEELMLDTSQLVKDVGTMLEGEDAVRE 207

Query: 199 GVVDKV 204
           G++D+V
Sbjct: 208 GLIDEV 213


>gi|220925602|ref|YP_002500904.1| peptidase S14 ClpP [Methylobacterium nodulans ORS 2060]
 gi|219950209|gb|ACL60601.1| peptidase S14 ClpP [Methylobacterium nodulans ORS 2060]
          Length = 400

 Score = 38.1 bits (87), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 2/132 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           +++++ +NS GG+ T G AI+  +   +   +    G AAS  S++  AG++ +      
Sbjct: 41  QDVTIRLNSGGGIATEGAAIHAALCAHRGRKTIIVEGVAASAASVIAMAGDEIVMAR--G 98

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A +++H PSG   G  S+ E   + +  +   +  IY +  GKT E     +  +  M+ 
Sbjct: 99  AVMMIHDPSGFTFGPVSEHEVAIRMLTSLATAMAGIYAERSGKTPEAARADMQAELWMAP 158

Query: 193 SEACDWGVVDKV 204
            EA   G  D+V
Sbjct: 159 EEAVAAGYADRV 170


>gi|257440282|ref|ZP_05616037.1| Clp protease [Faecalibacterium prausnitzii A2-165]
 gi|257197316|gb|EEU95600.1| Clp protease [Faecalibacterium prausnitzii A2-165]
          Length = 228

 Score = 38.1 bits (87), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 12/102 (11%)

Query: 47  VTGQIEDHMAT----------LICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           V GQIE H+             +  QL+ ++ +   + + + IN+ GG V AG+A+ + +
Sbjct: 39  VIGQIEGHVEAPQGQKTTKYEHVIPQLVAVQEDPAVEGLLVLINTVGGDVEAGLALAELI 98

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
             I  P +T  +G   S+G  L  +  +   F +P A + +H
Sbjct: 99  ASISKPSATVVLGGGHSIGIPLAVSARR--SFIVPTATMTVH 138


>gi|167769170|ref|ZP_02441223.1| hypothetical protein ANACOL_00493 [Anaerotruncus colihominis DSM
           17241]
 gi|167668810|gb|EDS12940.1| hypothetical protein ANACOL_00493 [Anaerotruncus colihominis DSM
           17241]
          Length = 240

 Score = 38.1 bits (87), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 78/176 (44%), Gaps = 22/176 (12%)

Query: 47  VTGQIEDHMATL----------ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           + GQIE H              +  QLL +E +   + + + +N+ GG V AG+AI + +
Sbjct: 50  IIGQIEGHYILPAQNKTTKYEHVIPQLLAVEQDPEIEGLVVILNTVGGDVEAGLAIAELL 109

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH--QPSG---GFSGQASDI 151
             ++ P  +  +G   S+G  L  +  +   F +P+A + +H  + +G   G     S  
Sbjct: 110 SGMRKPTVSLVLGGGHSIGVPLAVSARR--SFIVPSATMTVHPVRMNGLVLGVPQTLSYF 167

Query: 152 ERHAQDIVKI---KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           +R  + IVK      R++    +      +E+   +D   ++    A D G++D +
Sbjct: 168 DRMQERIVKFVTDNSRISPERFRQLMMNKDEL--VMDVGTVLDGQAAVDEGLIDSL 221


>gi|153853239|ref|ZP_01994648.1| hypothetical protein DORLON_00633 [Dorea longicatena DSM 13814]
 gi|149754025|gb|EDM63956.1| hypothetical protein DORLON_00633 [Dorea longicatena DSM 13814]
          Length = 250

 Score = 38.1 bits (87), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 36/182 (19%), Positives = 82/182 (45%), Gaps = 26/182 (14%)

Query: 43  RIVFVTGQIEDHMATLICAQL--------LFLEAENPQKEISLYI--NSPGGVVTAGMAI 92
           +++ + G+IE H A     +         +  E E+  K   L I  N+ GG V AG++I
Sbjct: 50  KLLTIVGEIEGHEAVSGNTKATKYEHLLPMLAEVEDSSKIDGLLILLNTLGGDVEAGLSI 109

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH--QPSGGFSGQASD 150
            + +  +  P  +  +G + S+G  L  + +    F +P+  +++H  + +G F G    
Sbjct: 110 AEMIASLSKPTVSLVLGGSHSIGGPLAVSAD--YSFIVPSGTMVIHPVRSNGMFIG---- 163

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDHIMSASEACDWGVVD 202
           +++   ++++ + R+     ++     E +E+ +        D   ++   +A   G++D
Sbjct: 164 VQQSLDNMIRTQDRITRFLSEHSSMKQERIEELMLNPTELVKDVGTLLEGKDAVREGLID 223

Query: 203 KV 204
            V
Sbjct: 224 AV 225


>gi|157803726|ref|YP_001492275.1| cytidylate kinase [Rickettsia canadensis str. McKiel]
 gi|157784989|gb|ABV73490.1| cytidylate kinase [Rickettsia canadensis str. McKiel]
          Length = 305

 Score = 38.1 bits (87), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 15/89 (16%)

Query: 47  VTGQIEDHMATLICAQLLFLEAENPQK-----------EISLYINSPGGVVTAGMAIYDT 95
           +TG  ED++A+++  +++F + +  +K            + + +NSPGG V     IY+ 
Sbjct: 48  ITGN-EDYIASILIDEIIFEDEKRDKKLKKIIDDSHIKALIVNVNSPGGTVVGSEKIYNI 106

Query: 96  MQFI--KPPISTFCMGQAASMGSLLLSAG 122
           ++ I  K P+    MG  A+ G  L+S G
Sbjct: 107 LRKISEKKPV-VIVMGTMATSGGYLISLG 134


>gi|291545120|emb|CBL18229.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ruminococcus
           sp. 18P13]
          Length = 243

 Score = 38.1 bits (87), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 31/154 (20%), Positives = 69/154 (44%), Gaps = 12/154 (7%)

Query: 59  ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLL 118
           I   L+ +E +   + + + +N+ GG V AG+AI + +  +K P  +  +G   S+G  L
Sbjct: 68  IIPALVAIEQDRSIEGLLIILNTVGGDVEAGLAIAELLAGMKTPTVSLVVGGGHSIGVPL 127

Query: 119 LSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYE 178
             + ++   F +P+A + +H      +G    + +      K++ R+      N G + +
Sbjct: 128 AVSAKR--SFIVPSATMTIHPVR--MNGMIVGVPQTLSYFKKMQDRIVNFVTANSGISEQ 183

Query: 179 EV--------EKTLDRDHIMSASEACDWGVVDKV 204
           +         E  +D   ++    A + G++D +
Sbjct: 184 QFRALMMETEELVMDVGTVVDGERAVELGLIDSL 217


>gi|193875744|gb|ACF24508.1| chloroplast ATP-dependent Clp protease proteolytic subunit 6
           [Gymnochlora stellata]
          Length = 207

 Score = 38.1 bits (87), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 34/183 (18%), Positives = 82/183 (44%), Gaps = 9/183 (4%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSP----GGV 85
            +SY I S+L +  ++++   I  +++ LI + + F    +    +S+++NSP      +
Sbjct: 27  NKSY-ITSQLFENDLIYICLPINSNVSRLIMSPV-FWYKHSKVPLLSIFLNSPEYLNKEI 84

Query: 86  VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG-- 143
           +   + + + +  +    +T  +G      SLLL+AG    R+ L N++ +LH       
Sbjct: 85  LFNEIYLINFILTLNIQFTTTNLGLCYGDLSLLLAAGNINDRYMLKNSKCILHNIHNKHT 144

Query: 144 -FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
            +    +  +++ ++ +    ++   Y +     Y  +     R     A E   +G++D
Sbjct: 145 IYEMYHTFFKKYWKEYIINHHKIMLYYQQFTSLGYNNINNITARKLYFKAIECKQYGIID 204

Query: 203 KVL 205
           K++
Sbjct: 205 KII 207


>gi|227875044|ref|ZP_03993189.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mobiluncus
           mulieris ATCC 35243]
 gi|306817331|ref|ZP_07451076.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mobiluncus
           mulieris ATCC 35239]
 gi|227844322|gb|EEJ54486.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mobiluncus
           mulieris ATCC 35243]
 gi|304649772|gb|EFM47052.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mobiluncus
           mulieris ATCC 35239]
          Length = 292

 Score = 38.1 bits (87), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 77/171 (45%), Gaps = 6/171 (3%)

Query: 43  RIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           R++ ++G I  E      I   +   E       +++++NSPGG V A   IY+ +    
Sbjct: 22  RVLRISGTIAEESWFDDDITPSIFASELNAGSGPVTIWLNSPGGDVVAAAQIYNMLIDYP 81

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFAL-PNARILLHQPSGGFSGQASDIERHAQDIV 159
             ++    G AAS  S++  A  K    A+ P + +++H P+    G   ++ R    + 
Sbjct: 82  GEVTVNIDGIAASAASVIAMAATK---VAMSPVSMLMIHNPATMAVGDKDELARAMSMLD 138

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
            +K  +   Y +    +  ++ K +D +  M A  A D G  D++L ++ D
Sbjct: 139 SVKESILNAYQEKTNLSRAKLSKLMDAETWMDARAAIDMGFADELLTNQRD 189


>gi|291536145|emb|CBL09257.1| Protease subunit of ATP-dependent Clp proteases [Roseburia
           intestinalis M50/1]
          Length = 217

 Score = 38.1 bits (87), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 94/213 (44%), Gaps = 42/213 (19%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVT--GQIEDH---MATL-------ICAQLLFLEA 68
           M   Q  + E   +     +K +I  +T  G+IE H    AT        +  +L  LE 
Sbjct: 1   MAENQEKKNEEIREFGQIQMKNKISLLTIIGEIEGHDCLPATTKTTKYEHVLPKLAELE- 59

Query: 69  ENPQKE-ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           +NP  E + L +N+ GG V +G+AI + +  I+ P  +  +G + S+G  L  A      
Sbjct: 60  DNPDTEGLLLLLNTVGGDVESGLAIAEMIASIRKPTVSLVLGGSHSIGVPL--AVSTDYS 117

Query: 128 FALPNARILLH-----------QPSGGFSGQASD-----IERHAQDIVKIKRRLNEIYVK 171
           F +P+  +++H           +P+  +  Q  D     I  H++     ++RL E+ + 
Sbjct: 118 FIVPSGTMVIHPVRMSGTVIGAKPTYDYFKQMQDRIVHFISTHSK---ASEKRLEELMM- 173

Query: 172 NCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           N G        T D   I+   EA + G++++V
Sbjct: 174 NTGIL------TKDLGTILVGKEAVEEGLINEV 200


>gi|169841259|ref|ZP_02874372.1| ATP-dependent Clp protease, proteolytic subunit [candidate division
           TM7 single-cell isolate TM7a]
          Length = 62

 Score = 38.1 bits (87), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 34/51 (66%)

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           +++I ++K   ++I  +  GK+ EE+    +RD+ MS  EA ++G++DK+L
Sbjct: 12  SKEIERMKEITSKILSEATGKSVEEIYADTERDNFMSPEEAVNYGLIDKIL 62


>gi|330896142|gb|EGH28363.1| peptidase S14 ClpP [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 183

 Score = 38.1 bits (87), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 65/137 (47%), Gaps = 7/137 (5%)

Query: 60  CAQLL---FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
           C QL+    L  E     +++ I + GG  + G  +Y+ +  +  P+ T  +G   SMG+
Sbjct: 17  CGQLIDRSSLAIERGASCLAVNIATMGGECSYGFTMYNFLLSLPIPVHTHNLGTVESMGN 76

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
           ++  AGE+  R A  +++ L H      SG   D  R ++  + +   L ++Y +   + 
Sbjct: 77  IVFLAGER--RTACVHSKFLFHPFHWHVSGSV-DHSRMSEYAMSLDYDL-QLYARIVAER 132

Query: 177 YEEVEKTLDRDHIMSAS 193
             +  + LD +  ++A+
Sbjct: 133 TVDAREVLDIEKYLTAA 149


>gi|303239123|ref|ZP_07325653.1| peptidase S14 ClpP [Acetivibrio cellulolyticus CD2]
 gi|302593461|gb|EFL63179.1| peptidase S14 ClpP [Acetivibrio cellulolyticus CD2]
          Length = 232

 Score = 38.1 bits (87), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 66/132 (50%), Gaps = 2/132 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I ++INSPGG   A   IY  +   K  ++    G AAS  S++  AG + +    P A
Sbjct: 49  DIVIWINSPGGDCIAASQIYTMLMDYKGRVTVKIDGIAASAASVIAMAGTEVL--MAPTA 106

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H P     G + ++++    + ++K  +   Y    G++  ++   +D +  ++A+
Sbjct: 107 LMMVHNPLTIAIGDSEEMQKAISMLDEVKESIINAYEIKTGQSRAKLSHLMDAETWLNAN 166

Query: 194 EACDWGVVDKVL 205
           +A + G  D +L
Sbjct: 167 KAIELGFADGLL 178


>gi|330503383|ref|YP_004380252.1| peptidase S14, ClpP [Pseudomonas mendocina NK-01]
 gi|328917669|gb|AEB58500.1| peptidase S14, ClpP [Pseudomonas mendocina NK-01]
          Length = 183

 Score = 38.1 bits (87), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 9/102 (8%)

Query: 40  LKERIVFVTGQIEDHMATLI---CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           ++  +V  T  I  +    +   C+Q +   A+    E+ L I + GG  + G ++Y+ +
Sbjct: 1   MRTHVVHFTAPINSYTCGQLIDKCSQAIHQGAD----ELVLKIATMGGECSYGFSLYNFL 56

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
             +  P+ T  +G   SMG+++  AGE   R A  +++ L H
Sbjct: 57  ISLPVPVKTHNLGTVESMGNIIFLAGET--RTACQHSKFLFH 96


>gi|283478672|emb|CAY74588.1| prophage LambdaSa04, ClpP endopeptidase (S14) family, non-peptidase
           homologue, putative [Erwinia pyrifoliae DSM 12163]
          Length = 282

 Score = 38.1 bits (87), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 76/153 (49%), Gaps = 8/153 (5%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMG 115
           A+ I A L  +  E    ++++ INSPGG +  G+AIY+ ++  +  ++   +G AAS  
Sbjct: 61  ASRIAAALRSIGGE----DVTVNINSPGGDMFEGLAIYNLLREYEGKVTVKVLGLAASAA 116

Query: 116 SLLLSAGEKGMRFALPNARILLHQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCG 174
           S++  AG++     +  A  L+      F+ G   ++ + A ++    R +N+IY    G
Sbjct: 117 SIIAMAGDE---VQIGRAAFLMIHNCWTFAMGNRHEMAKIAAELEPFDRAMNDIYGARTG 173

Query: 175 KTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
                +E  ++ +  +  SE+ +    D++L +
Sbjct: 174 LDAATIETMMNAETYIGGSESVEKXFADRLLTA 206


>gi|134299068|ref|YP_001112564.1| peptidase S14, ClpP [Desulfotomaculum reducens MI-1]
 gi|134051768|gb|ABO49739.1| peptidase S14, ClpP [Desulfotomaculum reducens MI-1]
          Length = 300

 Score = 38.1 bits (87), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 135 ILLHQPSGGFSGQASDIERHAQDIV-KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           +++H P    +G+A D+  HA D++ +IK  +   Y    G++  ++ K +D +  MSA 
Sbjct: 14  MMIHNPWTRVAGEAKDM-NHAADVLNEIKDSIITAYQMKTGRSRSKISKMMDNETWMSAK 72

Query: 194 EACDWGVVDKVL 205
            A   G +D +L
Sbjct: 73  TAMAEGFIDGIL 84


>gi|229006052|ref|ZP_04163740.1| Clp protease [Bacillus mycoides Rock1-4]
 gi|228755128|gb|EEM04485.1| Clp protease [Bacillus mycoides Rock1-4]
          Length = 221

 Score = 38.1 bits (87), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 4/99 (4%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP- 131
           K I++++NS GG V   +AI + ++     I     G AAS  S++  A +K     +P 
Sbjct: 29  KTINVHVNSGGGDVFESIAISNLLKNHSAQIVIHIDGLAASGASVIAMAADK---IIMPK 85

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYV 170
           N  +++H+     +G A D+ + A  + KI   + E Y 
Sbjct: 86  NTMMMIHRAWTYAAGNAEDLRKVADRLDKIDTAVTESYT 124


>gi|194017679|ref|ZP_03056289.1| YqeZ [Bacillus pumilus ATCC 7061]
 gi|194010579|gb|EDW20151.1| YqeZ [Bacillus pumilus ATCC 7061]
          Length = 414

 Score = 38.1 bits (87), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 27/46 (58%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLL 118
           K I L IN+PGG V A + I DT++    P++ F   +A S G+ L
Sbjct: 40  KHIILDINTPGGAVDAALEIADTIRASDIPVTAFVNHRALSAGAFL 85


>gi|134299785|ref|YP_001113281.1| peptidase S14, ClpP [Desulfotomaculum reducens MI-1]
 gi|134052485|gb|ABO50456.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Desulfotomaculum reducens MI-1]
          Length = 276

 Score = 38.1 bits (87), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 12/104 (11%)

Query: 45  VFVTGQIEDHMATL----------ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           V + GQIE H+             I  QL+ +E ++  + + L +N+ GG V AG+AI +
Sbjct: 77  VTIVGQIEGHIMLPAQNKTTKYEHIIPQLVGIEQDDNVEGVLLVLNTVGGDVEAGLAIAE 136

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
            +  +  P  T  +G   S+G  +  + +    +  P A + +H
Sbjct: 137 VVATMTKPTVTLVLGGGHSIGVPIAVSSK--YSYIAPTASMTIH 178


>gi|255280960|ref|ZP_05345515.1| Clp protease [Bryantella formatexigens DSM 14469]
 gi|255268408|gb|EET61613.1| Clp protease [Bryantella formatexigens DSM 14469]
          Length = 221

 Score = 37.7 bits (86), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 71/158 (44%), Gaps = 20/158 (12%)

Query: 59  ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLL 118
           I  QL  +E     + + + +N+ GG V AG+AI + +  +  P  +  +G + S+G  +
Sbjct: 58  ILPQLAAIEDSREIEGVLILLNTVGGDVEAGLAIAEMIASLSKPTVSLVLGGSHSIGVPI 117

Query: 119 LSAGEKGMRFALPNARILLH--QPSGGFSG--QASDIERHAQDIVKIKRRLNEIYVKNCG 174
             + +    F +    +++H  + SG   G  Q  D  R  QD      R+      +C 
Sbjct: 118 AVSAD--YSFIVETGTMVIHPVRMSGTVIGAPQTYDYFRQMQD------RILGFISGHCS 169

Query: 175 KTYEEVEK--------TLDRDHIMSASEACDWGVVDKV 204
            T + +E+        T D   I+  S+A + G++++V
Sbjct: 170 ATRDRLEELMLDTGMLTKDLGTILVGSQAVEEGIINQV 207


>gi|193875740|gb|ACF24506.1| chloroplast ATP-dependent Clp protease proteolytic subunit 4
           [Gymnochlora stellata]
          Length = 184

 Score = 37.7 bits (86), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 7/107 (6%)

Query: 42  ERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY---INSPGGV----VTAGMAIYD 94
           + I+++  QI          +L++ +    +  I++Y    N+   +    +    +IYD
Sbjct: 12  KNIIYLNDQINIENLKFFTGKLIYFKKNKTKGIINIYHGKTNNKFAISDNKIDVVTSIYD 71

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
            M      I T C+G A     L++S G+K  R++L N+    +  S
Sbjct: 72  LMNIYGNQIHTTCLGIAEDEFGLIMSFGKKKSRYSLINSTFYFNNLS 118


>gi|295696208|ref|YP_003589446.1| peptidase S14 ClpP [Bacillus tusciae DSM 2912]
 gi|295411810|gb|ADG06302.1| peptidase S14 ClpP [Bacillus tusciae DSM 2912]
          Length = 257

 Score = 37.7 bits (86), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 19/124 (15%)

Query: 25  QTNRGERSYDIYSRLLKERIVFVTGQIEDHMATL----------ICAQLLFLEAENPQKE 74
           QT   E   D+Y        + + GQIE H+             +  QL+  E  +  K 
Sbjct: 41  QTQVPEVDSDLYC-------ITIIGQIEGHIILPPQNKTTKYEHVIPQLVAAEQNDKVKG 93

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           + + +N+ GG V AG+AI + +  +  P  T  +G   S+G  +  AG+    F   +A 
Sbjct: 94  VLIVLNTVGGDVEAGLAIAEMIATLTKPTVTLVLGGGHSIGVPIAVAGQ--YSFIAESAT 151

Query: 135 ILLH 138
           + +H
Sbjct: 152 MTIH 155


>gi|303239203|ref|ZP_07325732.1| peptidase S49 [Acetivibrio cellulolyticus CD2]
 gi|302593248|gb|EFL62967.1| peptidase S49 [Acetivibrio cellulolyticus CD2]
          Length = 269

 Score = 37.7 bits (86), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 70/174 (40%), Gaps = 22/174 (12%)

Query: 47  VTGQIEDHMAT----------LICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           V GQIE H+             +  QL+ +E       + L +N+ GG V AG+AI + +
Sbjct: 65  VIGQIEGHIVLPPQNKTTKYEHVIPQLVAIEESKEIDGLLLILNTVGGDVEAGLAIAEMI 124

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQ 156
             +  P  +  +G   S+G  +  A      F  P+A + +H      +G    + +  +
Sbjct: 125 ASMSKPTVSLVLGGGHSIGVPM--AVSTKYSFIAPSATMTIHPIR--LNGMVIGVPQTFE 180

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDHIMSASEACDWGVVD 202
              K++ R+ +   KN   + E     +        D   I+   EA   G++D
Sbjct: 181 YFDKMQERVVQFVAKNSNISKETFRSLMLKTGELANDVGTILFGEEAVTQGLID 234


>gi|157693039|ref|YP_001487501.1| serine peptidase [Bacillus pumilus SAFR-032]
 gi|157681797|gb|ABV62941.1| possible S49 family serine peptidase [Bacillus pumilus SAFR-032]
          Length = 437

 Score = 37.7 bits (86), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 27/46 (58%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLL 118
           K I L IN+PGG V A + I DT++    P++ F   +A S G+ L
Sbjct: 63  KHIILDINTPGGAVDAALEIADTIRASDIPVTAFVNHRALSAGAFL 108


>gi|326791245|ref|YP_004309066.1| peptidase S14 ClpP [Clostridium lentocellum DSM 5427]
 gi|326542009|gb|ADZ83868.1| peptidase S14 ClpP [Clostridium lentocellum DSM 5427]
          Length = 279

 Score = 37.7 bits (86), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 12/104 (11%)

Query: 45  VFVTGQIEDHMATL----------ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           + + GQ+E HM+            I  Q++ L  +   K I + +N+ GG V AG+A+ +
Sbjct: 84  ITIIGQVEGHMSLPPQNKTTKYEHIIPQMVGLCDDPKIKGILIILNTVGGDVEAGLALAE 143

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
            +  +  P  +  +G A S+G  +  A +    F  P A + +H
Sbjct: 144 LIASVNKPTVSLVLGGAHSIGVPIAVASD--YSFITPTATMTIH 185


>gi|224123592|ref|XP_002330159.1| predicted protein [Populus trichocarpa]
 gi|222871615|gb|EEF08746.1| predicted protein [Populus trichocarpa]
          Length = 109

 Score = 37.7 bits (86), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 5/78 (6%)

Query: 87  TAGMAIYDTMQFIKPPISTFCMGQAASM---GSLLLSAGEKGMRFALPNARILLHQPSGG 143
           T G AI+D+M  +K    T  +G A +      LLL+AG KG R  +P+A+ ++ QP   
Sbjct: 3   TEGFAIHDSMMQLKNEKHTVAVGAAGAAGGQACLLLAAGTKGKRHMMPHAKAVIQQPRVP 62

Query: 144 FSG--QASDIERHAQDIV 159
            SG   ASD+   A++I+
Sbjct: 63  SSGLMPASDVLIRAKEIL 80


>gi|261367425|ref|ZP_05980308.1| Clp protease [Subdoligranulum variabile DSM 15176]
 gi|282570193|gb|EFB75728.1| Clp protease [Subdoligranulum variabile DSM 15176]
          Length = 239

 Score = 37.7 bits (86), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 72/155 (46%), Gaps = 14/155 (9%)

Query: 59  ICAQLLFLEAENPQKEISLYI-NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSL 117
           +  QL+ +E E+P+ E  L I N+ GG V AG+A+ + +  +  P +T  +G   S+G  
Sbjct: 72  VIPQLVDIE-EDPEIEGLLVILNTVGGDVEAGLALAELIAGVSKPSATLVLGGGHSIGIP 130

Query: 118 LLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT- 176
           L  +  +   F +P A + +H      SG    + +  +   +++ R+      + G T 
Sbjct: 131 LAVSARR--SFIVPTATMTVHPVR--HSGMVLGVPQTLRYFEQMQERIVGFVAGHSGITA 186

Query: 177 -------YEEVEKTLDRDHIMSASEACDWGVVDKV 204
                  +   E  +D   ++   +A + G++D++
Sbjct: 187 RRFTTLMHNTGELVMDMGTVLDGRQAVEEGLIDEL 221


>gi|257414294|ref|ZP_04745868.2| Clp protease [Roseburia intestinalis L1-82]
 gi|257200551|gb|EEU98835.1| Clp protease [Roseburia intestinalis L1-82]
 gi|291538992|emb|CBL12103.1| Protease subunit of ATP-dependent Clp proteases [Roseburia
           intestinalis XB6B4]
          Length = 252

 Score = 37.7 bits (86), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 94/213 (44%), Gaps = 42/213 (19%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVT--GQIEDH---MATL-------ICAQLLFLEA 68
           M   Q  + E   +     +K +I  +T  G+IE H    AT        +  +L  LE 
Sbjct: 36  MAENQEKKNEEIREFGQIQMKNKISLLTIIGEIEGHDCLPATTKTTKYEHVLPKLAELE- 94

Query: 69  ENPQKE-ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           +NP  E + L +N+ GG V +G+AI + +  I+ P  +  +G + S+G  L  A      
Sbjct: 95  DNPDTEGLLLLLNTVGGDVESGLAIAEMIASIRKPTVSLVLGGSHSIGVPL--AVSTDYS 152

Query: 128 FALPNARILLH-----------QPSGGFSGQASD-----IERHAQDIVKIKRRLNEIYVK 171
           F +P+  +++H           +P+  +  Q  D     I  H++     ++RL E+ + 
Sbjct: 153 FIVPSGTMVIHPVRMSGTVIGAKPTYDYFKQMQDRIVHFISTHSK---ASEKRLEELMM- 208

Query: 172 NCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           N G        T D   I+   EA + G++++V
Sbjct: 209 NTGIL------TKDLGTILVGKEAVEEGLINEV 235


>gi|228943756|ref|ZP_04106155.1| Clp protease [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228976688|ref|ZP_04137118.1| Clp protease [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228982345|ref|ZP_04142620.1| Clp protease [Bacillus thuringiensis Bt407]
 gi|228777391|gb|EEM25683.1| Clp protease [Bacillus thuringiensis Bt407]
 gi|228783035|gb|EEM31184.1| Clp protease [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228815908|gb|EEM62134.1| Clp protease [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|326940367|gb|AEA16263.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 210

 Score = 37.7 bits (86), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 7/144 (4%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP- 131
            +I ++INS GG    G+AI + ++     ++    G AAS  SL+     K     +P 
Sbjct: 27  NDIEIHINSNGGDAFEGIAICNYLKNHPSNVTAVIDGIAASAASLIAMGANK---IEMPS 83

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N  +++H+ S    G A  +E+ A+ +  +   L + Y       + ++E  LD +  M+
Sbjct: 84  NTTMMVHRASTYAFGNADSLEKQAKMLRDVDEALIQSYNSRFNGEFFQLETLLDNETYMT 143

Query: 192 ASEACDWGVVDKV---LMSRIDIE 212
           A +A  +G  D +   + S +D E
Sbjct: 144 AEKAKSFGFCDVITDSIQSSVDSE 167


>gi|291280462|ref|YP_003497297.1| signal peptide peptidase SppA [Deferribacter desulfuricans SSM1]
 gi|290755164|dbj|BAI81541.1| signal peptide peptidase SppA [Deferribacter desulfuricans SSM1]
          Length = 285

 Score = 37.7 bits (86), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 69/173 (39%), Gaps = 27/173 (15%)

Query: 59  ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLL 118
           I  +L   E  +  K + + INSPGG V     IY  ++ +K P+        AS G  +
Sbjct: 56  IVRELRKAEENDFVKGVIIRINSPGGAVAPSQEIYKAIRKVKKPVYAAISTLGASGGYYV 115

Query: 119 LSA------------GEKGMRFALPNARILLHQPSGGF----SGQASDIERHAQDIVKIK 162
            +A            G  G+     N + L  +    F    SG+  DI   ++++ K +
Sbjct: 116 AAACDKIYVLGGSITGSIGVIMRFSNFKELYDKIGVKFESIKSGKFKDIGSSSREMSKEE 175

Query: 163 RRLNEIYVKNCGKTY-----------EEVEKTLDRDHIMSASEACDWGVVDKV 204
           R L +  + N  K +           +++ K      I++  +A   G VDK+
Sbjct: 176 RELLQKAIDNVYKQFVNDILKTRHISKDIIKKYADGRILTGEQALKLGFVDKI 228


>gi|170721816|ref|YP_001749504.1| peptidase S14 ClpP [Pseudomonas putida W619]
 gi|169759819|gb|ACA73135.1| peptidase S14 ClpP [Pseudomonas putida W619]
          Length = 183

 Score = 37.7 bits (86), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 9/136 (6%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           + L I + GG  + G  +Y+ ++ +  P+ T  +G   SMG++L  AGE   R A   ++
Sbjct: 35  LQLNIATMGGECSYGFTLYNFLRALPVPVHTHNLGTVESMGNILFLAGEH--RTACAMSK 92

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIK---RRLNEIYVKNCGKTYE--EVEKTLDRD-H 188
            L H       G A D  R A+  + +    R   +I  +    + E  +V++ L  D  
Sbjct: 93  FLFHPFHWTLHG-AVDHARMAEYAMSLDYDLRLYAQIVAERTAGSAEVLDVQRYLMADPR 151

Query: 189 IMSASEACDWGVVDKV 204
           I+   EA   G++  V
Sbjct: 152 ILDPQEALGSGLIHAV 167


>gi|228955834|ref|ZP_04117808.1| hypothetical protein bthur0006_51730 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228803843|gb|EEM50488.1| hypothetical protein bthur0006_51730 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 217

 Score = 37.7 bits (86), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 4/131 (3%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFI-KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           + + +NS GG    G+ IY+ ++ + K  I       A++   + ++A E  MR     +
Sbjct: 34  VKIKLNSGGGDADQGVEIYNYLKDLDKKVIVEVTSLAASAASIIAMAADEIVMRTG---S 90

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           R+++H+ S    G   DI++    +      +  IY +  GK+ EE+   L+ +   +A 
Sbjct: 91  RMMIHEASTIAYGNKQDIQKTLNALEAYDESIVSIYQQKTGKSREEITDLLEAETWFTAE 150

Query: 194 EACDWGVVDKV 204
           +A   G  DKV
Sbjct: 151 QAVQEGFADKV 161


>gi|154484793|ref|ZP_02027241.1| hypothetical protein EUBVEN_02511 [Eubacterium ventriosum ATCC
           27560]
 gi|149734641|gb|EDM50558.1| hypothetical protein EUBVEN_02511 [Eubacterium ventriosum ATCC
           27560]
          Length = 217

 Score = 37.7 bits (86), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 62/138 (44%), Gaps = 16/138 (11%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           + +N+ GG V  G+AI + +  +  P  +  +G + S+G  L  + +    F +P   ++
Sbjct: 66  IILNTVGGDVECGLAIAEMIASLSKPTVSLVLGGSHSIGVPLAVSAD--YSFIVPTGTMV 123

Query: 137 LH--QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC-------GKTYEEVE-KTLDR 186
           +H  + +G F G     E       KI+ R+N+  + +C        +   E E  T D 
Sbjct: 124 IHPVRMNGMFIGVPQTYEYFK----KIQERINDFVINHCHIRENRFSELMNETEILTKDV 179

Query: 187 DHIMSASEACDWGVVDKV 204
             I+   +    G++D++
Sbjct: 180 GSILVGKQTVKEGIIDEI 197


>gi|291618509|ref|YP_003521251.1| Hypothetical Protein PANA_2956 [Pantoea ananatis LMG 20103]
 gi|291153539|gb|ADD78123.1| Hypothetical Protein PANA_2956 [Pantoea ananatis LMG 20103]
          Length = 178

 Score = 37.7 bits (86), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 6/113 (5%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           ++ LYI+SPGG + AG   Y  ++    P++T       S  +++    +K  R  + ++
Sbjct: 26  QVLLYISSPGGDIDAGKIGYQVVKNSPIPVTTVNASSVESSATMIYCGAQK--RQVMGDS 83

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRR----LNEIYVKNCGKTYEEVEK 182
             LLH P+ G + +++  E    +  +   R    +  IY      T E++EK
Sbjct: 84  IFLLHAPTVGNAPRSNVSENMLDEKTEFTSRYRNMIKTIYQSCTHLTDEQIEK 136


>gi|296132914|ref|YP_003640161.1| peptidase S49 [Thermincola sp. JR]
 gi|296031492|gb|ADG82260.1| peptidase S49 [Thermincola potens JR]
          Length = 270

 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 84/181 (46%), Gaps = 24/181 (13%)

Query: 43  RIVFVTGQIEDHMATL----------ICAQLLFLEAENPQKE-ISLYINSPGGVVTAGMA 91
            ++ + GQ+E H+             I  QL+ LE ENP+ E + + +N+ GG V AG+A
Sbjct: 69  HVLPIVGQVEGHLVLPPQNKATKYEHIIPQLVALE-ENPEIEGVLVVLNTIGGDVEAGLA 127

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           I + +  +  P  +  +G   S+G  +  A +    F    A + +H      +G    +
Sbjct: 128 IAEMITSMSKPTVSLVLGGGHSIGVPIAVATD--YSFIAETAGMTVHPIR--LTGLVIGV 183

Query: 152 ERHAQDIVKIKRRLNEIYVKNC----GKTYEEVEKT--LDRD--HIMSASEACDWGVVDK 203
            +  + + K++ R+    +K+      K  E + +T  L RD   ++   +A D G++D+
Sbjct: 184 PQTYEYLDKMQDRVVNFIIKHSKISEAKLRELMFRTGELARDIGAVLIGKDAVDVGLIDE 243

Query: 204 V 204
           V
Sbjct: 244 V 244


>gi|312961447|ref|ZP_07775950.1| clp protease (protease subunit) [Pseudomonas fluorescens WH6]
 gi|311284342|gb|EFQ62920.1| clp protease (protease subunit) [Pseudomonas fluorescens WH6]
          Length = 183

 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 8/142 (5%)

Query: 60  CAQLLFLEAENPQKEIS---LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
           C+QL+   +   Q++ S   L I + GG  + G  +Y+ +  +  P+ T  +G   SMG+
Sbjct: 17  CSQLIEKASLAVQRDASGLVLNIATMGGECSYGFTMYNFLLSLPIPVHTHNLGTVESMGN 76

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCG-K 175
           ++  AGE+  R A  +++ L H       G A D  R ++  + +   L ++Y +    +
Sbjct: 77  IIFLAGER--RTACRHSKFLFHPFHWHLQG-AVDHSRMSEYAMSLDYDL-QLYARIVAER 132

Query: 176 TYEEVEKTLDRDHIMSASEACD 197
           T +  EK     ++++A    D
Sbjct: 133 TPDAAEKLETEKYLIAAPRILD 154


>gi|163782343|ref|ZP_02177341.1| nodulation competitiveness protein NfeD [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159882376|gb|EDP75882.1| nodulation competitiveness protein NfeD [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 439

 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 26/154 (16%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCM---GQAASMGSLLLSAGEKGMRFALPNA 133
           L +N+PGG+  +   +    Q    P+  F     G+AAS G+++  + E  +    P  
Sbjct: 53  LQLNTPGGLAESMRRVVQRFQRSPLPVVVFVYPPGGRAASAGAIITVSAE--VAAMAPGT 110

Query: 134 RILLHQP---SGGFSG------QASDI--ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
            I    P    GG  G      +  D+  E+  QD++   R +     K  G+  + VEK
Sbjct: 111 NIGAAHPVQIGGGMPGDKKENKEEKDVMKEKILQDMLAFVRSI----AKEKGRNVKVVEK 166

Query: 183 TLDRDHIMSASEACDWGVVD------KVLMSRID 210
            +     +SA EA   GV+D      K L+ +ID
Sbjct: 167 MVKESLSLSAEEALREGVIDLIARDMKELLKKID 200


>gi|311745841|ref|ZP_07719626.1| signal peptide peptidase SppA, 67K type [Algoriphagus sp. PR1]
 gi|126576044|gb|EAZ80322.1| signal peptide peptidase SppA, 67K type [Algoriphagus sp. PR1]
          Length = 588

 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 30/160 (18%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFC-MGQAASMGSLLLSA---------- 121
           K I L +NSPGG V A   I+  M   K     +  MG+ A+ G   +SA          
Sbjct: 345 KAIVLRVNSPGGSVLASEVIWREMTEAKKAKPLYVSMGEVAASGGYYISAPADTIVAQPN 404

Query: 122 ---GEKGMRFALPNARILLHQPSGGFS-----GQASDIERHAQDIVKIKRRLNEIYVKNC 173
              G  G+     NA+ LL++  G  S     GQ SD     +++  I+R++ +  V+  
Sbjct: 405 TITGSIGIFGIWFNAQELLNEKLGITSDVVETGQLSDFMNPTRELTDIERKIVQTNVEKG 464

Query: 174 GKTY-----------EEVEKTLDRDHIMSASEACDWGVVD 202
            +T+            E  K +    + + ++A + G+VD
Sbjct: 465 YETFISRVSEGRGMSAEAVKEVASGRVWTGNQAKERGLVD 504


>gi|76798617|ref|ZP_00780844.1| phage protein [Streptococcus agalactiae 18RS21]
 gi|76586016|gb|EAO62547.1| phage protein [Streptococcus agalactiae 18RS21]
          Length = 243

 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 4/140 (2%)

Query: 71  PQ--KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           PQ   +I + INS GG V AG  IY T++  +  ++   +G AAS  S++  AG+  +  
Sbjct: 35  PQDNSDIEVLINSGGGDVYAGSEIYTTLKSYQGNVTVKIVGIAASAASVIAMAGD--VVE 92

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
             P A++++H  S   SG    +   A  +      +   YV   G    E+   +  + 
Sbjct: 93  ISPTAQLMIHNVSTTVSGDHKQMLHEAGVLENYNISIANAYVNKTGLEMNELLDLMSTET 152

Query: 189 IMSASEACDWGVVDKVLMSR 208
             +A +A + G  DK + + 
Sbjct: 153 WFNAQQAVEKGFADKEMFAE 172


>gi|325661480|ref|ZP_08150105.1| hypothetical protein HMPREF0490_00839 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472196|gb|EGC75409.1| hypothetical protein HMPREF0490_00839 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 232

 Score = 37.4 bits (85), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 83/186 (44%), Gaps = 28/186 (15%)

Query: 41  KERIVFVT--GQIEDHMAT----------LICAQLLFLEAENPQKEISLYINSPGGVVTA 88
           K RI  +T  G+IE H A            +  +L  +E       + + +N+ GG V A
Sbjct: 34  KHRIQLLTIIGEIEGHEAVSGNTKATKYEHLLPKLAEIEDNEEIDGVLILLNTMGGDVEA 93

Query: 89  GMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH--QPSGGFSG 146
           G+AI + +  +  P  +  +G + S+G  L  + +    F +P+  +++H  + +G F G
Sbjct: 94  GLAIAEMIASLSKPTVSLVLGGSHSIGGPLAVSAD--YSFIVPSGTMIVHPVRSTGMFIG 151

Query: 147 QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDHIMSASEACDW 198
               + +  +++ + + R+     ++   + E VE+ +        D   ++   +A   
Sbjct: 152 ----VLQSYKNMERTQDRITRFLAEHSRISQERVEELMLDSTQLVKDVGTLLEGEDAVRE 207

Query: 199 GVVDKV 204
           G++D V
Sbjct: 208 GLIDAV 213


>gi|251771980|gb|EES52552.1| protein of unknown function DUF114 [Leptospirillum
           ferrodiazotrophum]
          Length = 272

 Score = 37.4 bits (85), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 29/55 (52%)

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           +P   I L ++SPGG+V A M I   +   K P++ F    A S G+L+  A  +
Sbjct: 81  DPNTPIDLIVHSPGGLVLAAMQIAHALANRKAPVTVFVPHFAMSGGTLIALAASQ 135


>gi|257452656|ref|ZP_05617955.1| protease IV [Fusobacterium sp. 3_1_5R]
 gi|317059195|ref|ZP_07923680.1| protease IV [Fusobacterium sp. 3_1_5R]
 gi|313684871|gb|EFS21706.1| protease IV [Fusobacterium sp. 3_1_5R]
          Length = 564

 Score = 37.4 bits (85), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 6/85 (7%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI--KPPISTF 106
           G IED   TL   ++  ++ +   K I L INSPGG       +Y  ++ +  K P+   
Sbjct: 311 GTIEDE--TLFLDEVKAIQKDQNVKGIILRINSPGGSALVADTMYHAVKKLREKIPVYVS 368

Query: 107 CMGQAASMGSLLLSAGEKGMRFALP 131
             G AAS G  + +AGEK   FA P
Sbjct: 369 ISGTAASGGYYVAAAGEK--IFASP 391


>gi|293115362|ref|ZP_05791142.2| Clp protease [Butyrivibrio crossotus DSM 2876]
 gi|292810238|gb|EFF69443.1| Clp protease [Butyrivibrio crossotus DSM 2876]
          Length = 211

 Score = 37.4 bits (85), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 50/103 (48%), Gaps = 11/103 (10%)

Query: 45  VFVTGQIEDHMA---------TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDT 95
           V++ G+IE H             I  +L+ +E  +    +   IN+ GG V+AG+AI + 
Sbjct: 18  VYILGEIEGHDGGGSDKNTKYDEIIPRLVSIENNDDVDGVLFVINTMGGDVSAGLAIAEM 77

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           +  +  P  +  +G++ S+G  +  A      F + +A +++H
Sbjct: 78  IAGLSKPTVSLVIGESHSIGVPIAVAAN--YSFIVKSATVVIH 118


>gi|229136614|ref|ZP_04265295.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           BDRD-ST196]
 gi|228646846|gb|EEL03000.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           BDRD-ST196]
          Length = 159

 Score = 37.4 bits (85), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 4/65 (6%)

Query: 109 GQAASMGSLLLSAGEKGMRFALP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNE 167
           G A S+ S++  AG+K     +P NA +++H+P  G  G A ++ + A+D+  I+  +  
Sbjct: 15  GLAGSIASIIALAGDK---LIVPSNAYLMIHKPWSGAYGNAKELRKMAEDLDAIEEGIIN 71

Query: 168 IYVKN 172
           +Y +N
Sbjct: 72  VYKEN 76


>gi|83748454|ref|ZP_00945476.1| Malonyl-CoA-[acyl-carrier-protein] transacylase [Ralstonia
           solanacearum UW551]
 gi|207743602|ref|YP_002259994.1| malonyl coa-[acyl-carrier-protein] transacylase [Ralstonia
           solanacearum IPO1609]
 gi|83724865|gb|EAP72021.1| Malonyl-CoA-[acyl-carrier-protein] transacylase [Ralstonia
           solanacearum UW551]
 gi|206595001|emb|CAQ61928.1| malonyl coa-[acyl-carrier-protein] transacylase [Ralstonia
           solanacearum IPO1609]
          Length = 309

 Score = 37.4 bits (85), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 35/69 (50%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L AE P  E++L  N+   ++TA +A+Y   Q    P+ T   G +    S L++AG   
Sbjct: 45  LIAEGPADELNLTTNTQPVMLTAAVAVYRAWQAAGGPVPTVVAGHSLGEYSALVAAGAIA 104

Query: 126 MRFALPNAR 134
            + A+P  R
Sbjct: 105 FKDAVPLVR 113


>gi|327394887|dbj|BAK12309.1| crotonase/enoyl-coenzyme A (CoA) hydratase superfamily [Pantoea
           ananatis AJ13355]
          Length = 222

 Score = 37.4 bits (85), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 60/134 (44%), Gaps = 9/134 (6%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           ++ LYI+SPGG + AG   Y  ++    P++T       S  +++    +K  R  + ++
Sbjct: 70  QVLLYISSPGGDIDAGKIGYQVVKNSPIPVTTVNASSVESSATMIYCGAQK--RQVMGDS 127

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRR----LNEIYVKNCGKTYEEVEKTL---DR 186
             LLH P+ G + +++  E    +  +   R    +  IY      T E++EK     D 
Sbjct: 128 IFLLHAPTVGNAPRSNVSENMLDEKTEFTSRYRNVIKTIYQSCTHLTDEQIEKITYSEDN 187

Query: 187 DHIMSASEACDWGV 200
             ++   +A   G+
Sbjct: 188 HKLLDNKQALATGI 201


>gi|300704620|ref|YP_003746223.1| malonyl CoA-acyl carrier protein transacylase [Ralstonia
           solanacearum CFBP2957]
 gi|299072284|emb|CBJ43617.1| Malonyl CoA-acyl carrier protein transacylase [Ralstonia
           solanacearum CFBP2957]
          Length = 309

 Score = 37.4 bits (85), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 35/69 (50%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L AE P  E++L  N+   ++TA +A+Y   Q    P+ T   G +    S L++AG   
Sbjct: 45  LIAEGPADELNLTTNTQPVMLTAAVAVYRAWQAAGGPVPTVVAGHSLGEYSALVAAGAIA 104

Query: 126 MRFALPNAR 134
            + A+P  R
Sbjct: 105 FKDAVPLVR 113


>gi|207725227|ref|YP_002255623.1| malonyl coa-[acyl-carrier-protein] transacylase [Ralstonia
           solanacearum MolK2]
 gi|206590461|emb|CAQ37423.1| malonyl coa-[acyl-carrier-protein] transacylase [Ralstonia
           solanacearum MolK2]
          Length = 309

 Score = 37.4 bits (85), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 35/69 (50%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L AE P  E++L  N+   ++TA +A+Y   Q    P+ T   G +    S L++AG   
Sbjct: 45  LIAEGPADELNLTTNTQPVMLTAAVAVYRAWQAAGGPVPTVVAGHSLGEYSALVAAGAIA 104

Query: 126 MRFALPNAR 134
            + A+P  R
Sbjct: 105 FKDAVPLVR 113


>gi|317051372|ref|YP_004112488.1| signal peptide peptidase SppA, 36K type [Desulfurispirillum indicum
           S5]
 gi|316946456|gb|ADU65932.1| signal peptide peptidase SppA, 36K type [Desulfurispirillum indicum
           S5]
          Length = 277

 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 15/80 (18%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQ-KEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           I FV+G ++D              A NP    + + +NSPGGVVT    +Y  ++    P
Sbjct: 48  IDFVSGALDDF-------------ARNPMITGVLVRVNSPGGVVTPSQELYSLIRHYPKP 94

Query: 103 ISTFCMGQAASMGSLLLSAG 122
           +  F  G AAS G+L  + G
Sbjct: 95  VWAFHDGLAAS-GALFATIG 113


>gi|300766684|ref|ZP_07076601.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|300495784|gb|EFK30935.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
          Length = 247

 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/78 (23%), Positives = 39/78 (50%)

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           P A+I++H+     +G A D+E  A  +  I + +   Y    G    ++ + +  +  +
Sbjct: 108 PTAQIMIHKAWSQPAGNADDLEHEASILNGIDQSIASAYEAKTGMDQADLLQLMANETWL 167

Query: 191 SASEACDWGVVDKVLMSR 208
           +AS+A D G  D+++ + 
Sbjct: 168 TASDAVDKGFADEIMFTN 185


>gi|260567208|ref|ZP_05837678.1| clp protease [Brucella suis bv. 4 str. 40]
 gi|260156726|gb|EEW91806.1| clp protease [Brucella suis bv. 4 str. 40]
          Length = 327

 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI--KPPISTFCMGQAASMGSLLLSAGE 123
           +  ++  K + L ++SPGG    G AIYD ++ I  K P+ T     AAS G ++ SA +
Sbjct: 73  IAGDDAVKGVILLLDSPGGTTVGGEAIYDAVRKIATKKPVVTQVGTLAASAGYMIASASD 132


>gi|167748876|ref|ZP_02421003.1| hypothetical protein ANACAC_03650 [Anaerostipes caccae DSM 14662]
 gi|317470284|ref|ZP_07929678.1| Clp protease [Anaerostipes sp. 3_2_56FAA]
 gi|167651846|gb|EDR95975.1| hypothetical protein ANACAC_03650 [Anaerostipes caccae DSM 14662]
 gi|316902257|gb|EFV24177.1| Clp protease [Anaerostipes sp. 3_2_56FAA]
          Length = 239

 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 30/142 (21%), Positives = 69/142 (48%), Gaps = 16/142 (11%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K I + +N+ GG V  G+A+ + +  +  P  T  +G + S+G  L  + +    F + +
Sbjct: 84  KGILILLNTVGGDVECGLALAEMIASLSKPTVTLVLGGSHSIGVPLAVSSD--YSFIVKS 141

Query: 133 ARILLH--QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL------ 184
           A +++H  + SG F G    + +  ++I KI+ R+      +     ++VE+ +      
Sbjct: 142 ATMMIHPVRSSGTFIG----VLQSYRNIEKIQDRITRFISDHSDIAEDKVEELMLHIGEQ 197

Query: 185 --DRDHIMSASEACDWGVVDKV 204
             D   ++   +A + G+++++
Sbjct: 198 VKDAGTVLEGEQAVELGLINEI 219


>gi|299533259|ref|ZP_07046643.1| peptidase S14 ClpP [Comamonas testosteroni S44]
 gi|298718789|gb|EFI59762.1| peptidase S14 ClpP [Comamonas testosteroni S44]
          Length = 292

 Score = 37.0 bits (84), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 2/133 (1%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           +++ +NSPGG V  G+AIY+ ++  +  ++   +G AAS  S++  AG+  ++ A     
Sbjct: 79  VTVNVNSPGGDVFEGLAIYNLLREHQGEVTVKVLGLAASAASIIAMAGDT-VQIARAG-F 136

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
            ++H      +G  +D    A  +      L +IY    G   + + K +D +  +  S 
Sbjct: 137 FMVHNVWTVAAGNRNDYRELADWLEPFDSALADIYAARTGADVKAMGKLMDAESWIGGSS 196

Query: 195 ACDWGVVDKVLMS 207
           A D G  D++L S
Sbjct: 197 AIDQGFADELLPS 209


>gi|77462616|ref|YP_352120.1| putative ClpP-like protease [Rhodobacter sphaeroides 2.4.1]
 gi|77387034|gb|ABA78219.1| putative ClpP-like protease [Rhodobacter sphaeroides 2.4.1]
          Length = 279

 Score = 37.0 bits (84), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 65/133 (48%), Gaps = 2/133 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           +++ + INSPGG    G+AIY+ ++     ++   +G AAS  S++  AG++ +R A   
Sbjct: 74  RDVVVNINSPGGDFFEGLAIYNALREHPAKVTVRVLGVAASAASVIAMAGDE-IRIARAG 132

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
             +++H      +G    +   AQ +        +IY    G   +++   LDR+  +S 
Sbjct: 133 F-LMIHNTWVLAAGDRHALTEVAQWLEPFDAVSADIYAARSGIDAKKISAMLDRETWISG 191

Query: 193 SEACDWGVVDKVL 205
            +A + G  D +L
Sbjct: 192 GQAVEQGFADGLL 204


>gi|307190853|gb|EFN74699.1| B-cell receptor-associated protein 31 [Camponotus floridanus]
          Length = 233

 Score = 37.0 bits (84), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 3/87 (3%)

Query: 113 SMGSLLLSAGEKGMR---FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIY 169
           S  + LL+  E  MR    A   AR LL Q + G S Q    E H + + ++K+++ E+ 
Sbjct: 123 STQATLLAQNEAAMRQAQSATTTARSLLSQRTIGESAQNDSNEAHDKQVSELKKQIKELQ 182

Query: 170 VKNCGKTYEEVEKTLDRDHIMSASEAC 196
           VKN       V++  D++ I S +++ 
Sbjct: 183 VKNLELENNLVKEKKDKEAIKSQADSL 209


>gi|23501065|ref|NP_697192.1| signal peptide peptidase SppA [Brucella suis 1330]
 gi|62289130|ref|YP_220923.1| signal peptide peptidase SppA [Brucella abortus bv. 1 str. 9-941]
 gi|82699069|ref|YP_413643.1| Clp protease [Brucella melitensis biovar Abortus 2308]
 gi|148560143|ref|YP_001258187.1| signal peptide peptidase SppA [Brucella ovis ATCC 25840]
 gi|225626693|ref|ZP_03784732.1| signal peptide peptidase SppA, 36K type [Brucella ceti str. Cudo]
 gi|237814624|ref|ZP_04593622.1| signal peptide peptidase SppA, 36K type [Brucella abortus str. 2308
           A]
 gi|256368618|ref|YP_003106124.1| signal peptide peptidase SppA [Brucella microti CCM 4915]
 gi|297247546|ref|ZP_06931264.1| protease IV [Brucella abortus bv. 5 str. B3196]
 gi|23346932|gb|AAN29107.1| signal peptide peptidase SppA [Brucella suis 1330]
 gi|62195262|gb|AAX73562.1| SppA, signal peptide peptidase SppA [Brucella abortus bv. 1 str.
           9-941]
 gi|82615170|emb|CAJ10109.1| Clp protease:Peptidase U7:Signal peptide peptidase, SppA 36 kDa
           type [Brucella melitensis biovar Abortus 2308]
 gi|148371400|gb|ABQ61379.1| signal peptide peptidase SppA [Brucella ovis ATCC 25840]
 gi|225618350|gb|EEH15393.1| signal peptide peptidase SppA, 36K type [Brucella ceti str. Cudo]
 gi|237789461|gb|EEP63671.1| signal peptide peptidase SppA, 36K type [Brucella abortus str. 2308
           A]
 gi|255998776|gb|ACU47175.1| signal peptide peptidase SppA [Brucella microti CCM 4915]
 gi|297174715|gb|EFH34062.1| protease IV [Brucella abortus bv. 5 str. B3196]
          Length = 331

 Score = 37.0 bits (84), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI--KPPISTFCMGQAASMGSLLLSAGE 123
           +  ++  K + L ++SPGG    G AIYD ++ I  K P+ T     AAS G ++ SA +
Sbjct: 77  IAGDDAVKGVILLLDSPGGTTVGGEAIYDAVRKIATKKPVVTQVGTLAASAGYMIASASD 136


>gi|161618142|ref|YP_001592029.1| signal peptide peptidase SppA, 36K type [Brucella canis ATCC 23365]
 gi|254705333|ref|ZP_05167161.1| signal peptide peptidase SppA, 36K type [Brucella suis bv. 3 str.
           686]
 gi|261756044|ref|ZP_05999753.1| signal peptide peptidase SppA [Brucella suis bv. 3 str. 686]
 gi|161334953|gb|ABX61258.1| signal peptide peptidase SppA, 36K type [Brucella canis ATCC 23365]
 gi|261745797|gb|EEY33723.1| signal peptide peptidase SppA [Brucella suis bv. 3 str. 686]
          Length = 327

 Score = 37.0 bits (84), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI--KPPISTFCMGQAASMGSLLLSAGE 123
           +  ++  K + L ++SPGG    G AIYD ++ I  K P+ T     AAS G ++ SA +
Sbjct: 73  IAGDDAVKGVILLLDSPGGTTVGGEAIYDAVRKIATKKPVVTQVGTLAASAGYMIASASD 132


>gi|242398488|ref|YP_002993912.1| Putative protease [Thermococcus sibiricus MM 739]
 gi|242264881|gb|ACS89563.1| Putative protease [Thermococcus sibiricus MM 739]
          Length = 335

 Score = 37.0 bits (84), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 2/83 (2%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI--KP 101
           I+ V G I++  A  + +++  +  ++    + L+I SPGG V   + IY  ++ +  + 
Sbjct: 95  ILPVVGPIDETAAFDVISKIREIRNDDNIGGVVLWIESPGGYVGPVITIYKELKKLSYEK 154

Query: 102 PISTFCMGQAASMGSLLLSAGEK 124
           PI  +  G AAS G L+  A +K
Sbjct: 155 PIVAYTGGMAASGGYLIACAADK 177


>gi|326537889|gb|ADZ86104.1| signal peptide peptidase SppA, 36K type [Brucella melitensis M5-90]
          Length = 331

 Score = 37.0 bits (84), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI--KPPISTFCMGQAASMGSLLLSAGE 123
           +  ++  K + L ++SPGG    G AIYD ++ I  K P+ T     AAS G ++ SA +
Sbjct: 77  IAGDDAVKGVILLLDSPGGTTVGGEAIYDAVRKIATKKPVVTQVGTLAASAGYMIASASD 136


>gi|257463195|ref|ZP_05627594.1| protease IV [Fusobacterium sp. D12]
 gi|317060783|ref|ZP_07925268.1| protease IV [Fusobacterium sp. D12]
 gi|313686459|gb|EFS23294.1| protease IV [Fusobacterium sp. D12]
          Length = 564

 Score = 37.0 bits (84), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 6/90 (6%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI--KP 101
           ++ + G IED   TL   ++  ++ +N  K + L INSPGG       +Y  ++ +  K 
Sbjct: 306 LLTLEGTIEDE--TLFLDEVEAIQRDNNVKGVILRINSPGGSALVADMMYHAVKKLREKV 363

Query: 102 PISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           P+     G AAS G  +  AGEK   FA P
Sbjct: 364 PVYVSISGTAASGGYYVAVAGEK--IFASP 391


>gi|254700963|ref|ZP_05162791.1| signal peptide peptidase SppA [Brucella suis bv. 5 str. 513]
 gi|261751481|ref|ZP_05995190.1| signal peptide peptidase SppA [Brucella suis bv. 5 str. 513]
 gi|261741234|gb|EEY29160.1| signal peptide peptidase SppA [Brucella suis bv. 5 str. 513]
          Length = 327

 Score = 37.0 bits (84), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI--KPPISTFCMGQAASMGSLLLSAGE 123
           +  ++  K + L ++SPGG    G AIYD ++ I  K P+ T     AAS G ++ SA +
Sbjct: 73  IAGDDAVKGVILLLDSPGGTTVGGEAIYDAVRKIATKKPVVTQVGTLAASAGYMIASASD 132


>gi|163842424|ref|YP_001626828.1| signal peptide peptidase SppA, 36K type [Brucella suis ATCC 23445]
 gi|189023406|ref|YP_001934174.1| Clp protease [Brucella abortus S19]
 gi|254690458|ref|ZP_05153712.1| signal peptide peptidase SppA [Brucella abortus bv. 6 str. 870]
 gi|254694947|ref|ZP_05156775.1| signal peptide peptidase SppA [Brucella abortus bv. 3 str. Tulya]
 gi|254696578|ref|ZP_05158406.1| signal peptide peptidase SppA [Brucella abortus bv. 2 str. 86/8/59]
 gi|254707153|ref|ZP_05168981.1| signal peptide peptidase SppA [Brucella pinnipedialis M163/99/10]
 gi|254709303|ref|ZP_05171114.1| signal peptide peptidase SppA [Brucella pinnipedialis B2/94]
 gi|254713274|ref|ZP_05175085.1| signal peptide peptidase SppA [Brucella ceti M644/93/1]
 gi|254716373|ref|ZP_05178184.1| signal peptide peptidase SppA [Brucella ceti M13/05/1]
 gi|254731491|ref|ZP_05190069.1| signal peptide peptidase SppA [Brucella abortus bv. 4 str. 292]
 gi|256030826|ref|ZP_05444440.1| signal peptide peptidase SppA [Brucella pinnipedialis M292/94/1]
 gi|256060296|ref|ZP_05450469.1| signal peptide peptidase SppA [Brucella neotomae 5K33]
 gi|256258714|ref|ZP_05464250.1| signal peptide peptidase SppA [Brucella abortus bv. 9 str. C68]
 gi|260169730|ref|ZP_05756541.1| signal peptide peptidase SppA [Brucella sp. F5/99]
 gi|260546428|ref|ZP_05822168.1| clp protease [Brucella abortus NCTC 8038]
 gi|260756010|ref|ZP_05868358.1| signal peptide peptidase SppA [Brucella abortus bv. 6 str. 870]
 gi|260759234|ref|ZP_05871582.1| signal peptide peptidase SppA [Brucella abortus bv. 4 str. 292]
 gi|260760956|ref|ZP_05873299.1| signal peptide peptidase SppA [Brucella abortus bv. 2 str. 86/8/59]
 gi|260885030|ref|ZP_05896644.1| signal peptide peptidase SppA [Brucella abortus bv. 9 str. C68]
 gi|261215286|ref|ZP_05929567.1| signal peptide peptidase SppA [Brucella abortus bv. 3 str. Tulya]
 gi|261218155|ref|ZP_05932436.1| signal peptide peptidase SppA [Brucella ceti M13/05/1]
 gi|261314631|ref|ZP_05953828.1| signal peptide peptidase SppA [Brucella pinnipedialis M163/99/10]
 gi|261316812|ref|ZP_05956009.1| signal peptide peptidase SppA [Brucella pinnipedialis B2/94]
 gi|261320997|ref|ZP_05960194.1| signal peptide peptidase SppA [Brucella ceti M644/93/1]
 gi|261324268|ref|ZP_05963465.1| signal peptide peptidase SppA [Brucella neotomae 5K33]
 gi|261759268|ref|ZP_06002977.1| clp protease [Brucella sp. F5/99]
 gi|265987881|ref|ZP_06100438.1| signal peptide peptidase SppA [Brucella pinnipedialis M292/94/1]
 gi|163673147|gb|ABY37258.1| signal peptide peptidase SppA, 36K type [Brucella suis ATCC 23445]
 gi|189018978|gb|ACD71700.1| Clp protease [Brucella abortus S19]
 gi|260096535|gb|EEW80411.1| clp protease [Brucella abortus NCTC 8038]
 gi|260669552|gb|EEX56492.1| signal peptide peptidase SppA [Brucella abortus bv. 4 str. 292]
 gi|260671388|gb|EEX58209.1| signal peptide peptidase SppA [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676118|gb|EEX62939.1| signal peptide peptidase SppA [Brucella abortus bv. 6 str. 870]
 gi|260874558|gb|EEX81627.1| signal peptide peptidase SppA [Brucella abortus bv. 9 str. C68]
 gi|260916893|gb|EEX83754.1| signal peptide peptidase SppA [Brucella abortus bv. 3 str. Tulya]
 gi|260923244|gb|EEX89812.1| signal peptide peptidase SppA [Brucella ceti M13/05/1]
 gi|261293687|gb|EEX97183.1| signal peptide peptidase SppA [Brucella ceti M644/93/1]
 gi|261296035|gb|EEX99531.1| signal peptide peptidase SppA [Brucella pinnipedialis B2/94]
 gi|261300248|gb|EEY03745.1| signal peptide peptidase SppA [Brucella neotomae 5K33]
 gi|261303657|gb|EEY07154.1| signal peptide peptidase SppA [Brucella pinnipedialis M163/99/10]
 gi|261739252|gb|EEY27248.1| clp protease [Brucella sp. F5/99]
 gi|264660078|gb|EEZ30339.1| signal peptide peptidase SppA [Brucella pinnipedialis M292/94/1]
          Length = 327

 Score = 37.0 bits (84), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI--KPPISTFCMGQAASMGSLLLSAGE 123
           +  ++  K + L ++SPGG    G AIYD ++ I  K P+ T     AAS G ++ SA +
Sbjct: 73  IAGDDAVKGVILLLDSPGGTTVGGEAIYDAVRKIATKKPVVTQVGTLAASAGYMIASASD 132


>gi|256112659|ref|ZP_05453580.1| signal peptide peptidase SppA, 36K type [Brucella melitensis bv. 3
           str. Ether]
 gi|265994099|ref|ZP_06106656.1| signal peptide peptidase SppA [Brucella melitensis bv. 3 str.
           Ether]
 gi|262765080|gb|EEZ11001.1| signal peptide peptidase SppA [Brucella melitensis bv. 3 str.
           Ether]
          Length = 327

 Score = 37.0 bits (84), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI--KPPISTFCMGQAASMGSLLLSAGE 123
           +  ++  K + L ++SPGG    G AIYD ++ I  K P+ T     AAS G ++ SA +
Sbjct: 73  IAGDDAVKGVILLLDSPGGTTVGGEAIYDAVRKIATKKPVVTQVGTLAASAGYMIASASD 132


>gi|225851687|ref|YP_002731920.1| signal peptide peptidase SppA, 36K type [Brucella melitensis ATCC
           23457]
 gi|256045946|ref|ZP_05448818.1| signal peptide peptidase SppA, 36K type [Brucella melitensis bv. 1
           str. Rev.1]
 gi|256264800|ref|ZP_05467332.1| clp protease [Brucella melitensis bv. 2 str. 63/9]
 gi|260563227|ref|ZP_05833713.1| clp protease [Brucella melitensis bv. 1 str. 16M]
 gi|265992356|ref|ZP_06104913.1| signal peptide peptidase SppA [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|225640052|gb|ACN99965.1| signal peptide peptidase SppA, 36K type [Brucella melitensis ATCC
           23457]
 gi|260153243|gb|EEW88335.1| clp protease [Brucella melitensis bv. 1 str. 16M]
 gi|263003422|gb|EEZ15715.1| signal peptide peptidase SppA [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263095211|gb|EEZ18880.1| clp protease [Brucella melitensis bv. 2 str. 63/9]
 gi|326408176|gb|ADZ65241.1| signal peptide peptidase SppA, 36K type [Brucella melitensis M28]
          Length = 327

 Score = 37.0 bits (84), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI--KPPISTFCMGQAASMGSLLLSAGE 123
           +  ++  K + L ++SPGG    G AIYD ++ I  K P+ T     AAS G ++ SA +
Sbjct: 73  IAGDDAVKGVILLLDSPGGTTVGGEAIYDAVRKIATKKPVVTQVGTLAASAGYMIASASD 132


>gi|210612604|ref|ZP_03289395.1| hypothetical protein CLONEX_01597 [Clostridium nexile DSM 1787]
 gi|210151529|gb|EEA82536.1| hypothetical protein CLONEX_01597 [Clostridium nexile DSM 1787]
          Length = 236

 Score = 37.0 bits (84), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 36/182 (19%), Positives = 82/182 (45%), Gaps = 26/182 (14%)

Query: 43  RIVFVTGQIEDHMAT----------LICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI 92
           +++ + G+IE H A            +  +L  +E     + + + +N+ GG V AG+AI
Sbjct: 33  QLLTIIGEIEGHEAVSGNTKATKYEHLLPKLAEVEDNEEIEGLLILLNTLGGDVEAGLAI 92

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH--QPSGGFSGQASD 150
            + +  +  P  +  +G + S+G  L  + +    F +P+  +++H  + +G F G    
Sbjct: 93  AEMIASLSKPTVSLVLGGSHSIGGPLAVSAD--YSFIVPSGTMIIHPVRSNGMFIG---- 146

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDHIMSASEACDWGVVD 202
           + +  +++ + + R+      +   T E +E+ +        D   ++   EA   G++D
Sbjct: 147 VIQSYRNMERTQDRIIRFLAGHSHMTQERIEELMLDSTQLVKDVGTLLEGEEAVKEGLID 206

Query: 203 KV 204
            V
Sbjct: 207 AV 208


>gi|126464072|ref|YP_001045185.1| peptidase S14, ClpP [Rhodobacter sphaeroides ATCC 17029]
 gi|126105883|gb|ABN78413.1| peptidase S14, ClpP [Rhodobacter sphaeroides ATCC 17029]
          Length = 279

 Score = 37.0 bits (84), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 65/133 (48%), Gaps = 2/133 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           +++ + INSPGG    G+AIY+ ++     ++   +G AAS  S++  AG++ +R A   
Sbjct: 74  RDVVVNINSPGGDFFEGLAIYNALREHPAKVTVRVLGVAASAASVIAMAGDE-IRIARAG 132

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
             +++H      +G    +   AQ +        +IY    G   +++   LDR+  +S 
Sbjct: 133 F-LMIHNTWVLAAGDRHALTEVAQWLEPFDAVSADIYAARSGIDAKKIAAMLDRETWISG 191

Query: 193 SEACDWGVVDKVL 205
            +A + G  D +L
Sbjct: 192 GQAVEQGFADGLL 204


>gi|218660752|ref|ZP_03516682.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli
           IE4771]
          Length = 45

 Score = 37.0 bits (84), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 30/45 (66%)

Query: 167 EIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           +I  +  G+  +++ K  DRD+ +SA EA D+G+V +++ S+ DI
Sbjct: 1   KIMAEATGQPLDKIAKDTDRDYWLSAEEAKDYGLVSRIVTSQADI 45


>gi|256158851|ref|ZP_05456708.1| Clp protease [Brucella ceti M490/95/1]
 gi|256254232|ref|ZP_05459768.1| Clp protease [Brucella ceti B1/94]
 gi|261221381|ref|ZP_05935662.1| signal peptide peptidase SppA [Brucella ceti B1/94]
 gi|265997342|ref|ZP_06109899.1| signal peptide peptidase SppA [Brucella ceti M490/95/1]
 gi|260919965|gb|EEX86618.1| signal peptide peptidase SppA [Brucella ceti B1/94]
 gi|262551810|gb|EEZ07800.1| signal peptide peptidase SppA [Brucella ceti M490/95/1]
          Length = 327

 Score = 37.0 bits (84), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI--KPPISTFCMGQAASMGSLLLSAGE 123
           +  ++  K + L ++SPGG    G AIYD ++ I  K P+ T     AAS G ++ SA +
Sbjct: 73  IAGDDAVKGVILLLDSPGGTTVGGEAIYDAVRKIATKKPVVTQVGTLAASAGYMIASASD 132


>gi|226313002|ref|YP_002772896.1| translocation-enhancing protein [Brevibacillus brevis NBRC 100599]
 gi|226095950|dbj|BAH44392.1| translocation-enhancing protein [Brevibacillus brevis NBRC 100599]
          Length = 274

 Score = 37.0 bits (84), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 19/124 (15%)

Query: 25  QTNRGERSYDIYSRLLKERIVFVTGQIEDHMATL----------ICAQLLFLEAENPQKE 74
           QTN  +   +IY        + + GQ+E H+             +  QL+  E  N  + 
Sbjct: 63  QTNVPQLESNIYC-------MTIIGQVEGHIQLPPQNKTTKYEHLIPQLVAAEQNNKIEG 115

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           + + +N+ GG V AG+AI + +  +  P+ T  +G   S+G  +  AG     F    A 
Sbjct: 116 VLVILNTVGGDVEAGLAIAEMVASLSKPVVTLVLGGGHSIGVPIAVAGS--YSFIAETAT 173

Query: 135 ILLH 138
           + +H
Sbjct: 174 MTIH 177


>gi|306842559|ref|ZP_07475210.1| signal peptide peptidase SppA, 36K type [Brucella sp. BO2]
 gi|306287415|gb|EFM58895.1| signal peptide peptidase SppA, 36K type [Brucella sp. BO2]
          Length = 327

 Score = 37.0 bits (84), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI--KPPISTFCMGQAASMGSLLLSAGE 123
           +  ++  K + L ++SPGG    G AIYD ++ I  K P+ T     AAS G ++ SA +
Sbjct: 73  IAGDDAVKGVILLLDSPGGTTVGGEAIYDAVRKIAKKKPVVTQVGTLAASAGYMIASASD 132


>gi|188586087|ref|YP_001917632.1| ATP-dependent Clp protease proteolytic subunit ClpP [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179350774|gb|ACB85044.1| ATP-dependent Clp protease proteolytic subunit ClpP [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 280

 Score = 37.0 bits (84), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 12/82 (14%)

Query: 45  VFVTGQIEDHMATL----------ICAQLLFLEAENPQKE-ISLYINSPGGVVTAGMAIY 93
           + + GQIE HM             +  QL+  E +NPQ E I + +N+ GG V AG+AI 
Sbjct: 50  MVIVGQIEGHMTLPPQNKTTKYEHVLPQLVAAE-QNPQVEGILVILNTVGGDVEAGLAIA 108

Query: 94  DTMQFIKPPISTFCMGQAASMG 115
           + +  I  P  +  +G   S+G
Sbjct: 109 EMLDSISKPSVSLVLGGGHSIG 130


>gi|265983331|ref|ZP_06096066.1| signal peptide peptidase SppA [Brucella sp. 83/13]
 gi|264661923|gb|EEZ32184.1| signal peptide peptidase SppA [Brucella sp. 83/13]
          Length = 239

 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFI--KPPISTFCMGQAASMGSLLLSAGE 123
           K + L ++SPGG    G AIYD ++ I  K P+ T     AAS G ++ SA +
Sbjct: 84  KGVILLLDSPGGTTVGGEAIYDAVRKIAKKKPVVTQVGTLAASAGYMIASASD 136


>gi|83589919|ref|YP_429928.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moorella
           thermoacetica ATCC 39073]
 gi|83572833|gb|ABC19385.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moorella
           thermoacetica ATCC 39073]
          Length = 259

 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 37/176 (21%), Positives = 77/176 (43%), Gaps = 22/176 (12%)

Query: 47  VTGQIEDHMATL----------ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           + GQIE H+             I  QL+ +E +   K + + +N+ GG V AG+AI + +
Sbjct: 63  IVGQIEGHLVMPPQNKTTKYEHIIPQLVAVEQDPSIKGLLVVLNTVGGDVEAGLAIAEML 122

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQ 156
             +  P+ +  +G   S+G  +  A      F    A + +H      +G    + +  +
Sbjct: 123 VSMSKPVVSLVLGGGHSIGVPISVAAN--YSFIAETATMTIHPIR--LTGLVIGVPQTYE 178

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
            + K++ R+    V++   + +E+ + +        D   I+   +A   G++D+V
Sbjct: 179 YLDKMQDRVIRFIVEHANISEQELRRLMFQTGELARDIGTILVGQDAVRVGLIDEV 234


>gi|308180862|ref|YP_003924990.1| protease subunit of ATP-dependent Clp protease [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|308046353|gb|ADN98896.1| protease subunit of ATP-dependent Clp protease [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 251

 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/78 (23%), Positives = 39/78 (50%)

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           P A+I++H+     +G A D+E  A  +  I + +   Y    G    ++ + +  +  +
Sbjct: 107 PTAQIMIHKAWSQPAGNADDLEHEASILNGIDQSIASAYEAKTGMDQADLLQLMANETWL 166

Query: 191 SASEACDWGVVDKVLMSR 208
           +AS+A D G  D+++ + 
Sbjct: 167 TASDAVDKGFADEIMFAN 184


>gi|254718370|ref|ZP_05180181.1| signal peptide peptidase SppA, 36K type [Brucella sp. 83/13]
 gi|306839601|ref|ZP_07472405.1| signal peptide peptidase SppA, 36K type [Brucella sp. NF 2653]
 gi|306405299|gb|EFM61574.1| signal peptide peptidase SppA, 36K type [Brucella sp. NF 2653]
          Length = 235

 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFI--KPPISTFCMGQAASMGSLLLSAGE 123
           K + L ++SPGG    G AIYD ++ I  K P+ T     AAS G ++ SA +
Sbjct: 80  KGVILLLDSPGGTTVGGEAIYDAVRKIAKKKPVVTQVGTLAASAGYMIASASD 132


>gi|229605031|ref|YP_002875730.1| putative scaffolding protein/Clp protease [Lactococcus phage P087]
 gi|227826014|gb|ACP41738.1| putative scaffolding protein/Clp protease [Lactococcus phage P087]
          Length = 346

 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 65/139 (46%), Gaps = 8/139 (5%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN- 132
           EI L  N  GG V    A+   +  ++        G  AS G++L S  ++    ++ + 
Sbjct: 46  EIDLTTN--GGSVMDAGAMVSELNKLEGKSKVHIQGMVASAGTVLASVFDE---VSMSDF 100

Query: 133 ARILLHQPSGGFSG--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           +  L+H P   + G  +  ++E   Q +  I ++  +IY    G   + +E  + ++ + 
Sbjct: 101 SYFLIHYPRQQYYGILRPQELEELTQQLGAITQQSIDIYEAKTGLDRDVIEDYMAKESMF 160

Query: 191 SASEACDWGVVDKVLMSRI 209
           SAS+A D G VD ++ + +
Sbjct: 161 SASQAKDLGFVDSIVGTTV 179


>gi|307692908|ref|ZP_07635145.1| peptidase S14, ClpP [Ruminococcaceae bacterium D16]
          Length = 406

 Score = 36.6 bits (83), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 83/174 (47%), Gaps = 7/174 (4%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+ SR   + + + TG+ E  +     + +  L A   +  I++ INS GG +  G+AI+
Sbjct: 40  DVVSR---QPVDWWTGEPEPGLYIAPESFMEDLAAVKGKSNITIKINSCGGDLYTGIAIH 96

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG--QASDI 151
           + ++ +         G AAS  S++  AG++   +  P + +++H  +G        +D+
Sbjct: 97  NAIKGLTGHKVVVVEGIAASAASVIACAGDEVQVY--PGSMVMIHGVAGLLYDYYTLADL 154

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           ++  +D    +R + EIY    G   +++   + R+  M   EA D G  D +L
Sbjct: 155 KKLQKDFDASERAIAEIYHAKTGLEVDQLRSMMTRETWMVGQEAIDNGFADTLL 208


>gi|257466515|ref|ZP_05630826.1| protease IV [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917670|ref|ZP_07913910.1| protease IV [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691545|gb|EFS28380.1| protease IV [Fusobacterium gonidiaformans ATCC 25563]
          Length = 564

 Score = 36.6 bits (83), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 6/85 (7%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI--KPPISTF 106
           G IED   TL   ++  ++ +   K + L INSPGG       +Y  ++ +  K P+   
Sbjct: 311 GTIEDE--TLFLDEVKAIQKDQNVKGVILRINSPGGSALVADTMYHAVKKLREKIPVYVS 368

Query: 107 CMGQAASMGSLLLSAGEKGMRFALP 131
             G AAS G  + +AGEK   FA P
Sbjct: 369 ISGTAASGGYYVAAAGEK--IFASP 391


>gi|23099067|ref|NP_692533.1| translocation enhancing protein [Oceanobacillus iheyensis HTE831]
 gi|22777295|dbj|BAC13568.1| translocation enhancing protein [Oceanobacillus iheyensis HTE831]
          Length = 244

 Score = 36.6 bits (83), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 14/107 (13%)

Query: 43  RIVFVTGQIEDHMATL----------ICAQLLFLEAENPQKE-ISLYINSPGGVVTAGMA 91
            ++ + GQ+E H+             +  QL+ +E +NP+ E + + +N+ GG V AG+A
Sbjct: 44  HVLSIIGQVEGHVQLPPQNKTTKYEHLLPQLIAIE-QNPKIEGLVILLNTVGGDVEAGLA 102

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           + + +  +  P  +  +G   S+G  +  A +    F +P A + +H
Sbjct: 103 LAEMISSLSKPTVSIVLGGGHSIGVPIAVATDH--SFIVPTATMTIH 147


>gi|306844422|ref|ZP_07477012.1| signal peptide peptidase SppA, 36K type [Brucella sp. BO1]
 gi|306275235|gb|EFM56985.1| signal peptide peptidase SppA, 36K type [Brucella sp. BO1]
          Length = 327

 Score = 36.6 bits (83), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI--KPPISTFCMGQAASMGSLLLSAGE 123
           +  ++  K + L ++SPGG    G AIYD ++ I  K P+ T     AAS G ++ SA +
Sbjct: 73  IAGDDAVKGVILLLDSPGGTTVGGEAIYDAVRKIAKKKPVVTQVGTLAASAGYMIASASD 132


>gi|325294625|ref|YP_004281139.1| signal peptide peptidase SppA, 36K type [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065073|gb|ADY73080.1| signal peptide peptidase SppA, 36K type [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 292

 Score = 36.6 bits (83), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI--KPPISTFCMGQAASMGSLLLSA 121
           LE     K I L ++SPGGVV A   IYD ++ I  K PI    MG  A+ G L +S 
Sbjct: 61  LERNKEIKAIVLRVDSPGGVVGACQEIYDKVKEITKKKPI-VVSMGSIAASGGLYISV 117


>gi|283779627|ref|YP_003370382.1| hypothetical protein Psta_1848 [Pirellula staleyi DSM 6068]
 gi|283438080|gb|ADB16522.1| hypothetical protein Psta_1848 [Pirellula staleyi DSM 6068]
          Length = 195

 Score = 36.6 bits (83), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 6/94 (6%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
           + V G++ +H   L C +LL   A  P  E++LY NSPGG   A M++   ++      +
Sbjct: 14  IAVMGELTEHEPDL-CEKLL---AVPPGGEVTLYFNSPGGSAYAAMSLASIIKLRNLQAT 69

Query: 105 TFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
               G+ +S      +A  K  R   P++  L H
Sbjct: 70  GVVTGECSSAALWPFAACIK--RLVTPHSVALFH 101


>gi|254224908|ref|ZP_04918523.1| Protease subunit of ATP-dependent Clp proteases [Vibrio cholerae
           V51]
 gi|125622596|gb|EAZ50915.1| Protease subunit of ATP-dependent Clp proteases [Vibrio cholerae
           V51]
          Length = 292

 Score = 36.6 bits (83), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 29/133 (21%), Positives = 65/133 (48%), Gaps = 2/133 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K +++YINSPGG +  G+AI++ +Q     ++   +G AAS  S++  A +   R    +
Sbjct: 74  KPVTVYINSPGGDMWEGIAIHNRLQEHSQKVTIKVIGIAASAASIIAMASDD--RQIATS 131

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           + +++H       G    +   A  + +    + ++Y    G+  EE+ + +D +  +  
Sbjct: 132 SFLMIHNCWTCICGNRHFMREMADTMEEFDMAMADVYADTSGQPVEEMSRMMDAESYIRG 191

Query: 193 SEACDWGVVDKVL 205
            +A + G+   ++
Sbjct: 192 KKAVELGLCTSII 204


>gi|296116410|ref|ZP_06835024.1| signal peptide peptidase SppA, 36K type [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295977003|gb|EFG83767.1| signal peptide peptidase SppA, 36K type [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 314

 Score = 36.6 bits (83), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 13/73 (17%)

Query: 70  NPQ-KEISLYINSPGGVVTAGMAIYDTM-QFIK-PPISTFCMGQAASMGSLLLSAGEKGM 126
           NP  K + L IN+PGG VT G  ++D + +F +  P+       A SMGSL  SA   G 
Sbjct: 78  NPAVKGMLLDINTPGGAVTGGETLHDAIAEFARQKPV-------AVSMGSLAASA---GY 127

Query: 127 RFALPNARILLHQ 139
             A+P  R+  H 
Sbjct: 128 MIAVPAQRLFAHH 140


>gi|291542999|emb|CBL16109.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ruminococcus
           bromii L2-63]
          Length = 269

 Score = 36.6 bits (83), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 22/141 (15%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           + IN+ GG V AG+AI + +  +K P  +  +G   S+G  L  A +K   F   +A + 
Sbjct: 104 VLINTVGGDVEAGLAIAEVISGMKKPTVSIVLGGGHSIGIPLAVAAKK--SFIAKSASMT 161

Query: 137 LH--QPSGGFSGQASDIE--RHAQDIVK---------IKRRLNEIYVKNCGKTYEEVEKT 183
           +H  + +G   G     E  +  QD +           K R N++ V N G      E  
Sbjct: 162 VHPVRTTGLTLGVPQTFEYFQRMQDRITTFVAENSNITKDRYNQL-VLNTG------ELV 214

Query: 184 LDRDHIMSASEACDWGVVDKV 204
           +D   I+   EA + G++D+V
Sbjct: 215 MDIGTILEGEEAVEEGLIDEV 235


>gi|225018528|ref|ZP_03707720.1| hypothetical protein CLOSTMETH_02475 [Clostridium methylpentosum
           DSM 5476]
 gi|224948729|gb|EEG29938.1| hypothetical protein CLOSTMETH_02475 [Clostridium methylpentosum
           DSM 5476]
          Length = 262

 Score = 36.6 bits (83), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 2/80 (2%)

Query: 59  ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLL 118
           +   L+ +E     K + + +N+ GG V AG+AI + +  I  P  +  +G   S+G  L
Sbjct: 77  VIPALVAIEQSPDIKGLVVILNTVGGDVEAGLAIAELIAGINKPTVSLVLGGGHSIGVPL 136

Query: 119 LSAGEKGMRFALPNARILLH 138
             + +K   F +P+A + +H
Sbjct: 137 AVSAKK--SFIVPSASMTVH 154


>gi|254523177|ref|ZP_05135232.1| peptidase S14, ClpP [Stenotrophomonas sp. SKA14]
 gi|219720768|gb|EED39293.1| peptidase S14, ClpP [Stenotrophomonas sp. SKA14]
          Length = 245

 Score = 36.6 bits (83), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 12/136 (8%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK-----GMRFA 129
           I L I+SPGG V A  ++   +   K  +     G AAS  + +  A +K     G  F 
Sbjct: 61  IHLRIDSPGGDVFAARSMMTAIAQHKATVIAHIDGLAASAMTGVCMACDKVEISQGAGFM 120

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           + NA  +         G  +D+ +  + + KI   L   Y +  GK   ++ + +D +  
Sbjct: 121 IHNAWTIT-------VGNKADMIKTGELLAKIDAGLAGDYTRRTGKDQSQIVQWMDEETW 173

Query: 190 MSASEACDWGVVDKVL 205
            +A EA + G  D+V+
Sbjct: 174 FTADEAKEHGFADEVV 189


>gi|296133921|ref|YP_003641168.1| protein of unknown function DUF107 [Thermincola sp. JR]
 gi|296032499|gb|ADG83267.1| protein of unknown function DUF107 [Thermincola potens JR]
          Length = 450

 Score = 36.6 bits (83), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 76/173 (43%), Gaps = 16/173 (9%)

Query: 41  KERIVFVT--GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           + +IVF+   G+IE  MA+ +   L   E +   K++   I++PGG++ +   I   +  
Sbjct: 39  QAKIVFIPIKGEIEPGMASFVERSLDKAE-QMGAKKVVFEIDTPGGLIDSAQRIKTRIFN 97

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG----FSGQASDIERH 154
            + P   F  G+A S G L+  A E+   +  P   I   +P        +   SD+E  
Sbjct: 98  AQVPTVAFINGEAKSAGVLIALAAEE--IYMTPGTAIGAAEPVPNNPKILASWRSDLEEA 155

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS--ASEACDWGVVDKVL 205
           A+      R  N   V         +E   ++  I+S  A +A + G+ DK++
Sbjct: 156 AE-----ARGRNPKIVAGMADRNVVIENIKEKGEILSLTAKKAVELGIADKIV 203


>gi|291522433|emb|CBK80726.1| Protease subunit of ATP-dependent Clp proteases [Coprococcus catus
           GD/7]
          Length = 233

 Score = 36.6 bits (83), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 29/138 (21%), Positives = 61/138 (44%), Gaps = 12/138 (8%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I + +N+ GG V AG+AI + +  I  P  +  +G + S+G  L  + +    F +P+  
Sbjct: 78  ILVLLNTMGGDVEAGLAIAEMIASISKPTVSLVLGGSHSIGVPLAVSAD--YSFIVPSGT 135

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DR 186
           +++H      +G    + +  +   +I+ R+    V N       ++K +        D 
Sbjct: 136 MIIHPVR--MNGMVIGVIQTYEYFERIQERILNFIVTNSRIAKSHLKKLMLDTSKLAKDV 193

Query: 187 DHIMSASEACDWGVVDKV 204
             ++   E  D G++D +
Sbjct: 194 GTVLDGQETVDCGLIDAI 211


>gi|320006269|gb|ADW01298.1| protease subunit of ATP-dependent Clp protease [Lactobacillus phage
           Sha1]
          Length = 245

 Score = 36.6 bits (83), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 18/78 (23%), Positives = 39/78 (50%)

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           P A+I++H+     +G A D+E  A  +  I + +   Y    G    ++ + +  +  +
Sbjct: 101 PTAQIMIHKAWSQPAGNADDLEHEASILNGIDQSIASAYEAKTGMDQADLLQLMANETWL 160

Query: 191 SASEACDWGVVDKVLMSR 208
           +AS+A D G  D+++ + 
Sbjct: 161 TASDAVDKGFADEIMFAN 178


>gi|196231671|ref|ZP_03130528.1| signal peptide peptidase SppA, 36K type [Chthoniobacter flavus
           Ellin428]
 gi|196224143|gb|EDY18656.1| signal peptide peptidase SppA, 36K type [Chthoniobacter flavus
           Ellin428]
          Length = 345

 Score = 36.6 bits (83), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 7/81 (8%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI-------KP 101
           G + + M   +  QL     +   K + LY++SPGG VTA  +IYD ++ +       K 
Sbjct: 84  GALGESMVDDLKIQLEQAATDEKVKAVVLYVDSPGGEVTASDSIYDAVRKVREGGYGKKK 143

Query: 102 PISTFCMGQAASMGSLLLSAG 122
           P+  +    AAS G  +  AG
Sbjct: 144 PVVVYMGSLAASGGYYISCAG 164


>gi|313114424|ref|ZP_07799950.1| Clp protease [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310623251|gb|EFQ06680.1| Clp protease [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 236

 Score = 36.6 bits (83), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 24/108 (22%)

Query: 47  VTGQIEDH---------------MATLICAQLLFLEAENPQKE-ISLYINSPGGVVTAGM 90
           V GQIE H               +  L+ AQ      E+P+ E + + +N+ GG V AG+
Sbjct: 48  VIGQIEGHSEAPQGQKTTKYEHVIPQLVAAQ------EDPRIEGLLVLLNTVGGDVEAGL 101

Query: 91  AIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           A+ + +  +  P +T  +G   S+G  L  +  +   F +P A + +H
Sbjct: 102 ALAELIASVSKPSATLVLGGGHSIGIPLAVSARR--SFIVPTATMTVH 147


>gi|323701887|ref|ZP_08113557.1| peptidase S14 ClpP [Desulfotomaculum nigrificans DSM 574]
 gi|323533191|gb|EGB23060.1| peptidase S14 ClpP [Desulfotomaculum nigrificans DSM 574]
          Length = 272

 Score = 36.6 bits (83), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 12/104 (11%)

Query: 45  VFVTGQIEDHMATL----------ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           V + GQIE H+             I  QL+ +E     + + L +N+ GG V AG+AI +
Sbjct: 73  VTIVGQIEGHIMLPSQNKTTKYEHIIPQLVGIEQAEDIEGVLLILNTVGGDVEAGLAIAE 132

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
            +  +  P  +  +G   S+G  +  A      F  P A + +H
Sbjct: 133 VIATMTKPTVSLVLGGGHSIGVPI--AVSSNYSFIAPTASMTIH 174


>gi|56963977|ref|YP_175708.1| translocation-enhancing protein TepA [Bacillus clausii KSM-K16]
 gi|56910220|dbj|BAD64747.1| translocation-enhancing protein TepA [Bacillus clausii KSM-K16]
          Length = 243

 Score = 36.6 bits (83), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 14/103 (13%)

Query: 47  VTGQIEDHMATL----------ICAQLLFLEAENPQKE-ISLYINSPGGVVTAGMAIYDT 95
           V GQIE HM             +  QL+ +E +NP+ E + + +N+ GG V AG+A+ + 
Sbjct: 47  VVGQIEGHMQLPPQNKTTKYEHMIPQLVAVE-QNPKIEGLLIILNTVGGDVEAGLALSEM 105

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           +  I  P  T  +G   S+G  + +A      F    A + +H
Sbjct: 106 IASISKPTVTLVLGGGHSIGVPIATAAS--YSFIAETATMTIH 146


>gi|167033633|ref|YP_001668864.1| peptidase S14 ClpP [Pseudomonas putida GB-1]
 gi|166860121|gb|ABY98528.1| peptidase S14 ClpP [Pseudomonas putida GB-1]
          Length = 183

 Score = 36.6 bits (83), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 11/145 (7%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           + L I + GG  + G  +Y+ ++ +   + T  +G   SMG++L  AGE+  R A   ++
Sbjct: 35  LQLNIATMGGECSYGFTLYNFLRALPVEVHTHNLGTVESMGNILFLAGER--RTACSFSK 92

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD-------RD 187
            L H       G   D  R A+  + +   L  +Y +   +  E   + LD         
Sbjct: 93  FLFHPFHWTLHGSV-DHSRMAEYAMSLDYDL-RLYAQIVTERTEGAAEVLDVPRYLMAYP 150

Query: 188 HIMSASEACDWGVVDKVLMSRIDIE 212
            I+   EA + G++D +    I +E
Sbjct: 151 RILGPREAMENGLIDAIDEMPIGVE 175


>gi|118355546|ref|XP_001011032.1| probable peptidase, putative [Tetrahymena thermophila]
 gi|89292799|gb|EAR90787.1| probable peptidase, putative [Tetrahymena thermophila SB210]
          Length = 265

 Score = 36.6 bits (83), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 40/170 (23%)

Query: 73  KEISLYINSPGG------VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK-- 124
           K ++L INSPGG      ++T  +  +     +  P+ TF    AAS G  LLS G+K  
Sbjct: 46  KAVALLINSPGGSPVQCDIITEMVKGFSKKHHL--PLYTFANDIAASGGQFLLSIGDKSF 103

Query: 125 -------------GMRFALPN-ARILLHQPSGGFSGQASDIE----------RHAQDIVK 160
                        GM F L N A+    +P    S Q  ++              + I++
Sbjct: 104 AQETSLVGSVGVVGMWFGLGNLAKEYKLKPEIFSSNQEQELAYMNFFEDLTPEKKEKIIR 163

Query: 161 IKRRLNEIYVKNCGK------TYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             +  ++I++++  K      + EE EK +    I+   +A  +G+VD++
Sbjct: 164 TLKTHHKIFIEHIEKHSNYKISPEEREKKIYDASIVLGKDAVKYGLVDEI 213


>gi|228962824|ref|ZP_04124079.1| Clp protease [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|228796861|gb|EEM44216.1| Clp protease [Bacillus thuringiensis serovar pakistani str. T13001]
          Length = 210

 Score = 36.2 bits (82), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 4/133 (3%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP- 131
            +I ++INS GG    G+AI + ++     ++    G AAS  SL+     K     +P 
Sbjct: 27  NDIEIHINSNGGDAFEGIAICNYLKNHPSNVTAVIDGIAASAASLIAMGANK---IEMPS 83

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N  +++H+ S    G A  +E+ A  +  +   L + Y       + ++E  LD +  M+
Sbjct: 84  NTTMMVHRASTYAFGNADSLEKQANMLRGVDEALIQSYNSRFNGEFFQLETLLDNETYMT 143

Query: 192 ASEACDWGVVDKV 204
           A +A  +G  D +
Sbjct: 144 AEKAKSFGFCDVI 156


>gi|224475988|ref|YP_002633594.1| putative Clp protease, phage associated [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|222420595|emb|CAL27409.1| putative Clp protease, phage associated [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 238

 Score = 36.2 bits (82), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 73/150 (48%), Gaps = 12/150 (8%)

Query: 63  LLFLEAENPQ----------KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAA 112
           LL ++A +P           +++ + INS GG V +G  IY  ++     ++   +G AA
Sbjct: 20  LLDMDATSPNDIINALPSTNEDVEVIINSGGGEVMSGSEIYTALKSYAGNVNVKVVGVAA 79

Query: 113 SMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKN 172
           S  S++  AG+  +  + P A++++H  S    G    +   ++ +  + R +   Y+  
Sbjct: 80  SAASVIAMAGDT-IEMS-PTAQMMIHNASTLAYGDDRAMASASKMLNSVNRGIANAYMNK 137

Query: 173 CGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
            GK+ +E+   ++ +  MSA +A D G  D
Sbjct: 138 TGKSEQEILDLMNEESWMSAQDAVDLGFAD 167


>gi|17988076|ref|NP_540710.1| putative protease IV [Brucella melitensis bv. 1 str. 16M]
 gi|17983826|gb|AAL52974.1| putative protease iv [Brucella melitensis bv. 1 str. 16M]
          Length = 301

 Score = 36.2 bits (82), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI--KPPISTFCMGQAASMGSLLLSAGE 123
           +  ++  K + L ++SPGG    G AIYD ++ I  K P+ T     AAS G ++ SA +
Sbjct: 47  IAGDDAVKGVILLLDSPGGTTVGGEAIYDAVRKIATKKPVVTQVGTLAASAGYMIASASD 106


>gi|313901853|ref|ZP_07835274.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Thermaerobacter subterraneus DSM 13965]
 gi|313467896|gb|EFR63389.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Thermaerobacter subterraneus DSM 13965]
          Length = 324

 Score = 36.2 bits (82), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 37/179 (20%), Positives = 80/179 (44%), Gaps = 22/179 (12%)

Query: 44  IVFVTGQIEDHMATL----------ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           ++ + GQ+E H+             I  QL+ +E     K + + +N+ GG V AG+A+ 
Sbjct: 72  VLTIVGQVEGHLQLPAQNKTTKYEHIIPQLVAVEQNPAIKGLLVILNTVGGDVEAGLALA 131

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           + ++ +  P  +  +G   S+G  +  A +  + F  P A + +H      +G    + +
Sbjct: 132 ELIRSLSKPKVSIVLGGGHSIGVPIAVAAD--VSFIAPTATMTIHPIR--LTGLVIGVPQ 187

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKT------LDRD--HIMSASEACDWGVVDKV 204
             + + K++ R+    V+N   + +   +       L RD   ++   +A   G++D+V
Sbjct: 188 SYEYLDKMQERIIRFVVENSRISRDRFRELMFRTGELARDIGTVLVGEDAVREGLIDEV 246


>gi|195650143|gb|ACG44539.1| hypothetical protein [Zea mays]
          Length = 95

 Score = 36.2 bits (82), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 150 DIERHAQDIVKIK-RRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           D+ +H   I+    +++++++    G+  + V++  +RD  MS+SEA D+G++D +L +R
Sbjct: 35  DVPKHRSHIMHDHLQKVDKMFAAFTGQLLDMVQQWTERDQFMSSSEAMDFGLLDALLETR 94


>gi|34496600|ref|NP_900815.1| hypothetical protein CV_1145 [Chromobacterium violaceum ATCC 12472]
 gi|34102454|gb|AAQ58820.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 208

 Score = 36.2 bits (82), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 30/50 (60%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           + L++N+PGG   AG+ I + +   +  + T    +A SMG+L+  AG++
Sbjct: 60  VYLHLNTPGGNFDAGLQIINNITASQAHVVTILEARAYSMGALIFLAGDE 109


>gi|153816437|ref|ZP_01969105.1| hypothetical protein RUMTOR_02690 [Ruminococcus torques ATCC 27756]
 gi|317500190|ref|ZP_07958422.1| translocation-enhancing protein TepA [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331087582|ref|ZP_08336512.1| hypothetical protein HMPREF1025_00095 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145846225|gb|EDK23143.1| hypothetical protein RUMTOR_02690 [Ruminococcus torques ATCC 27756]
 gi|316898405|gb|EFV20444.1| translocation-enhancing protein TepA [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330400453|gb|EGG80086.1| hypothetical protein HMPREF1025_00095 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 235

 Score = 36.2 bits (82), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 35/182 (19%), Positives = 83/182 (45%), Gaps = 26/182 (14%)

Query: 43  RIVFVTGQIEDHMATL----------ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI 92
           +++ + G+IE H +            +  +L  +E ++    + + +N+ GG V AG+AI
Sbjct: 33  QLLTIIGEIEGHDSVSGNTKATKYEHLLPRLAQIEEDDETDGVLILLNTLGGDVEAGLAI 92

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH--QPSGGFSGQASD 150
            + +  +  P  +  +G + S+G  L  + +    F +P   +++H  + +G F G    
Sbjct: 93  AEMIASLSKPTVSLVLGGSHSIGGPLAVSAD--YSFIVPTGTMIVHPVRSTGMFIG---- 146

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEE-VEKTLDRDHI-------MSASEACDWGVVD 202
           + +  +++ K + R+ +    +   T +  +E  LD   +       +   +A   G++D
Sbjct: 147 VMQSYRNMEKTQDRITKFIASHSNITQDRLLELMLDSSQLVKDVGTMLEGEQAVKEGMID 206

Query: 203 KV 204
           +V
Sbjct: 207 EV 208


>gi|282164272|ref|YP_003356657.1| hypothetical protein MCP_1602 [Methanocella paludicola SANAE]
 gi|282156586|dbj|BAI61674.1| hypothetical protein [Methanocella paludicola SANAE]
          Length = 1430

 Score = 36.2 bits (82), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 12/89 (13%)

Query: 109 GQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASD------IERHAQDIVKIK 162
           G   +   +L++  E  ++ A+   ++L H P GGF+ Q ++      +ER     +KIK
Sbjct: 879 GAGYTCHMMLITGKEDAIKDAIGRIQVLSHHPLGGFATQGANSYKIDSLERDPIIELKIK 938

Query: 163 RRLN------EIYVKNCGKTYEEVEKTLD 185
           R LN      + Y K  G+++ E    LD
Sbjct: 939 RLLNINAKAFDFYKKQFGESFPEDAIALD 967


>gi|241662593|ref|YP_002980953.1| cyclic nucleotide-binding protein [Ralstonia pickettii 12D]
 gi|309781175|ref|ZP_07675912.1| malonyl CoA-acyl carrier protein transacylase [Ralstonia sp.
           5_7_47FAA]
 gi|240864620|gb|ACS62281.1| cyclic nucleotide-binding protein [Ralstonia pickettii 12D]
 gi|308919996|gb|EFP65656.1| malonyl CoA-acyl carrier protein transacylase [Ralstonia sp.
           5_7_47FAA]
          Length = 309

 Score = 36.2 bits (82), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 35/69 (50%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L AE P +E++L  N+   ++TA +A+Y   Q    P  T   G +    S L++AG   
Sbjct: 45  LIAEGPAEELNLTTNTQPVMLTAAVAVYRAWQAAGGPTPTVVAGHSLGEYSALVAAGAIA 104

Query: 126 MRFALPNAR 134
            + A+P  R
Sbjct: 105 FKDAVPLVR 113


>gi|168236909|ref|ZP_02661967.1| ClpP protease [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194734371|ref|YP_002117151.1| ClpP protease [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194709873|gb|ACF89094.1| ClpP protease [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197290051|gb|EDY29410.1| ClpP protease [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 282

 Score = 36.2 bits (82), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 64/137 (46%), Gaps = 12/137 (8%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE-----KGMRF 128
           ++++ INSPGG +  G+AIY+ ++  +  ++   +G AAS  S++  AG+     +G   
Sbjct: 75  DVTVNINSPGGDMFEGLAIYNLLREYQGKVTVKVLGIAASAASVIAMAGDDIQIGRGAFL 134

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
            + N  ++         G   D    +  +      + +IY    G     V+K +D + 
Sbjct: 135 MIHNCWVVAM-------GNRHDFAELSASLEPFDNAMADIYAARSGLDMVTVQKLMDAES 187

Query: 189 IMSASEACDWGVVDKVL 205
            +  S+A + G+ D +L
Sbjct: 188 YIGGSDAVEKGLADSLL 204


>gi|303326177|ref|ZP_07356620.1| signal peptide peptidase SppA, 36K type [Desulfovibrio sp.
           3_1_syn3]
 gi|302864093|gb|EFL87024.1| signal peptide peptidase SppA, 36K type [Desulfovibrio sp.
           3_1_syn3]
          Length = 358

 Score = 36.2 bits (82), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 61/122 (50%), Gaps = 10/122 (8%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ-K 73
            L LV + +   +R E    + S   +  +V V G I D   TL  A +  +E  NPQ K
Sbjct: 73  LLALVLIGLAVFSRDENGQGLLSGGDRLALVMVRGPIMDVAPTL--AWIRKIE-RNPQVK 129

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFI--KPPISTFCMGQAASMGSLLLS-AGEKGMRFAL 130
            + L ++SPGG   A   +YD +  +  K P++   MG  A+ G L++S AG  G  FA 
Sbjct: 130 GVLLRVDSPGGGAAASQEVYDALARLARKRPLAV-SMGSMAASGGLMVSMAG--GRIFAN 186

Query: 131 PN 132
           P+
Sbjct: 187 PS 188


>gi|331084957|ref|ZP_08334044.1| hypothetical protein HMPREF0987_00347 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408657|gb|EGG88122.1| hypothetical protein HMPREF0987_00347 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 229

 Score = 35.8 bits (81), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 38/186 (20%), Positives = 83/186 (44%), Gaps = 28/186 (15%)

Query: 41  KERIVFVT--GQIEDHMAT----------LICAQLLFLEAENPQKEISLYINSPGGVVTA 88
           K RI  +T  G+IE H A            +  +L  +E       + + +N+ GG V A
Sbjct: 31  KHRIQLLTIIGEIEGHEAVSGNTKATKYEHLLPKLAEIEDNEEIDGVLILLNTMGGDVEA 90

Query: 89  GMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH--QPSGGFSG 146
           G+AI + +  +  P  +  +G + S+G  L  + +    F +P+  +++H  + +G F G
Sbjct: 91  GLAIAEMIASLSKPTVSLVLGGSHSIGGPLAVSAD--YSFIVPSGTMIVHPVRSTGMFIG 148

Query: 147 QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDHIMSASEACDW 198
               + +  +++ + + R+     ++   + + VE+ +        D   ++   +A   
Sbjct: 149 ----VLQSYKNMERTQDRITRFLAEHSRISQDRVEELMLDSTQLVKDVGTLLEGEDAVRE 204

Query: 199 GVVDKV 204
           G++D V
Sbjct: 205 GLIDAV 210


>gi|160945600|ref|ZP_02092826.1| hypothetical protein FAEPRAM212_03129 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443331|gb|EDP20336.1| hypothetical protein FAEPRAM212_03129 [Faecalibacterium prausnitzii
           M21/2]
          Length = 227

 Score = 35.8 bits (81), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 16/104 (15%)

Query: 47  VTGQIEDHMAT----------LICAQLLFLEAENPQKE-ISLYINSPGGVVTAGMAIYDT 95
           V GQIE H              +  QL+ ++ E+P+ E + + +N+ GG V AG+A+ + 
Sbjct: 39  VIGQIEGHTEAPQGQKTTKYEHVIPQLVAVQ-EDPRIEGLLVLLNTVGGDVEAGLALAEL 97

Query: 96  MQFIKPPISTFCMGQAASMG-SLLLSAGEKGMRFALPNARILLH 138
           +  I  P +T  +G   S+G  L +SA      F +P A + +H
Sbjct: 98  IASISKPSATLVLGGGHSIGIPLAVSARHS---FIVPTATMTVH 138


>gi|307942848|ref|ZP_07658193.1| proteinase IV protein [Roseibium sp. TrichSKD4]
 gi|307773644|gb|EFO32860.1| proteinase IV protein [Roseibium sp. TrichSKD4]
          Length = 335

 Score = 35.8 bits (81), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASMGSLLLSAGE 123
           +P K + + INSPGG  T G AIY  ++ +    P+ +    + AS G ++  AG+
Sbjct: 79  DPVKGVIVAINSPGGSTTGGEAIYSALRKLAEDKPVVSEIRTEGASAGYMIAMAGD 134


>gi|320101772|ref|YP_004177363.1| signal peptide peptidase SppA, 36K type [Isosphaera pallida ATCC
           43644]
 gi|319749054|gb|ADV60814.1| signal peptide peptidase SppA, 36K type [Isosphaera pallida ATCC
           43644]
          Length = 379

 Score = 35.8 bits (81), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 3/83 (3%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ---FIK 100
           I+ +TG I+D  A  I  Q+     ++  K + L I+SPGG V+A   ++  +Q     +
Sbjct: 98  IIEITGSIDDSKADGISRQITQASLDSSVKGVLLRIDSPGGTVSASDRLWRDVQTRLVGR 157

Query: 101 PPISTFCMGQAASMGSLLLSAGE 123
            P+      +AAS G  +  AG+
Sbjct: 158 KPVVVSMGSRAASGGYYIACAGD 180


>gi|295102204|emb|CBK99749.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Faecalibacterium prausnitzii L2-6]
          Length = 228

 Score = 35.8 bits (81), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 24/102 (23%), Positives = 49/102 (48%), Gaps = 12/102 (11%)

Query: 47  VTGQIEDHMAT----------LICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           V GQ+E H+             +  QL+ ++ +   + + + +N+ GG V AG+A+ + +
Sbjct: 40  VIGQVEGHVEAPQGQKTTKYEHVIPQLVAVQEDPAIEGLLVLLNTVGGDVEAGLALAELI 99

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
             I  P +   +G   S+G  L  + ++   F +P A + +H
Sbjct: 100 ASISKPSAAVVLGGGHSIGIPLAVSAQR--SFIVPTATMTIH 139


>gi|229194208|ref|ZP_04321063.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           ATCC 10876]
 gi|228589269|gb|EEK47233.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           ATCC 10876]
          Length = 173

 Score = 35.8 bits (81), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 18/134 (13%)

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMG--------QAASMGSLLLSAGEKGMRFAL 130
           +NSPGG V  G+AIY+ ++     I     G         A +   L+++ G        
Sbjct: 1   MNSPGGDVFDGIAIYNQLKNHPAKIIINVDGLAASAASIIAMAADELIMNTG-------- 52

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
             + +++H+ S    G   DI +    +  I + L +IY+        E+E  +  +   
Sbjct: 53  --SMLMIHEASTWTWGTKLDIRKTLNALEGIDKSLADIYMTRYQGERSEIETMIANETWF 110

Query: 191 SASEACDWGVVDKV 204
           +A+EA + G+  KV
Sbjct: 111 TANEAVEIGLAHKV 124


>gi|288931153|ref|YP_003435213.1| hypothetical protein Ferp_0768 [Ferroglobus placidus DSM 10642]
 gi|288893401|gb|ADC64938.1| protein of unknown function DUF107 [Ferroglobus placidus DSM 10642]
          Length = 424

 Score = 35.8 bits (81), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 77/180 (42%), Gaps = 24/180 (13%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
           V + G I +     I       E EN    I + +++PGG+V +   I   +   K P+ 
Sbjct: 24  VRIEGAINEGTVIKIERAFKIAEEENADA-ILITLDTPGGLVKSTEKIVSMILSSKIPVV 82

Query: 105 TFCMGQ---AASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKI 161
           T+   Q   +AS GS++L AG             +     G   G A+ I    +   K+
Sbjct: 83  TYVYPQGAFSASAGSIILIAGH------------VAAMSEGTSVGAATPIAVGVEG-TKV 129

Query: 162 KRRLNEI---YVKNC----GKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           + +  +    YVK+     G+    +EK +   + +SA EA  + V+D +  S+ ++ EK
Sbjct: 130 EEKAVKYLASYVKSIAEKRGRNATAIEKFVTEAYSLSAKEALKYNVIDVIANSKEELFEK 189


>gi|150391721|ref|YP_001321770.1| peptidase S14, ClpP [Alkaliphilus metalliredigens QYMF]
 gi|149951583|gb|ABR50111.1| peptidase S14, ClpP [Alkaliphilus metalliredigens QYMF]
          Length = 232

 Score = 35.8 bits (81), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 30/132 (22%), Positives = 63/132 (47%), Gaps = 2/132 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I +++NSPGG   A   IY  +   K  ++    G AAS  S++  AG   +    P A
Sbjct: 49  DIVIWLNSPGGDCIAASQIYAMLMDYKGTVTVKIDGIAASAASVIAMAGTTVL--MAPTA 106

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H P     G + ++++    + ++K  +   Y    G++  ++   +D +  ++  
Sbjct: 107 LMMVHNPLTVAIGDSEEMKKAIAMLSEVKESIINAYEIKTGQSRTKLSHLMDAETWLNGK 166

Query: 194 EACDWGVVDKVL 205
           +A + G  D +L
Sbjct: 167 KAIELGFADGIL 178


>gi|149175995|ref|ZP_01854612.1| SppA [Planctomyces maris DSM 8797]
 gi|148845149|gb|EDL59495.1| SppA [Planctomyces maris DSM 8797]
          Length = 343

 Score = 35.8 bits (81), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 3/92 (3%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI--KP 101
           I+ +TG I       I   +     +   K I L I+SPGG+V     IY  +  +  K 
Sbjct: 78  IISITGTIMPPFTERILESIKTAHEDKQVKGILLEIDSPGGLVADSHQIYHRLVELRKKK 137

Query: 102 PISTFCMGQAASMGSLL-LSAGEKGMRFALPN 132
           PI       AAS G  + + AGE+G+ FA P 
Sbjct: 138 PIVVSMKRMAASGGYYVAMGAGEEGVIFAEPT 169


>gi|296122406|ref|YP_003630184.1| signal peptide peptidase SppA, 36K type [Planctomyces limnophilus
           DSM 3776]
 gi|296014746|gb|ADG67985.1| signal peptide peptidase SppA, 36K type [Planctomyces limnophilus
           DSM 3776]
          Length = 338

 Score = 35.8 bits (81), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 3/92 (3%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI--KP 101
           ++ V+G I   +   I  Q+     +   K + L I+SPGG V     IY  ++ +  K 
Sbjct: 71  VLRVSGTIMPPLTERIIRQIEVAAEDERVKGVLLTIDSPGGFVADSHQIYHALEKLRAKK 130

Query: 102 PISTFCMGQAASMGSLL-LSAGEKGMRFALPN 132
           PIS      AAS G  + + AG KG  FA P 
Sbjct: 131 PISIQMKRLAASGGYYIAMGAGTKGQIFAEPT 162


>gi|222823269|ref|YP_002574842.1| protease IV [Campylobacter lari RM2100]
 gi|222538490|gb|ACM63591.1| protease IV [Campylobacter lari RM2100]
          Length = 297

 Score = 35.8 bits (81), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 5/78 (6%)

Query: 47  VTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP--PIS 104
           + G+I D  A+ +  Q+  L+ +N  K +  YI+SPGG     M I   +Q +K   P+ 
Sbjct: 54  LKGEIND--ASTLLEQIYKLKDDNAIKGVLFYIDSPGGAFAPSMEIALAIQDLKAKKPVV 111

Query: 105 TFCMGQAASMGSLLLSAG 122
            +  G  AS GS L + G
Sbjct: 112 AYAGGTIAS-GSYLSAVG 128


>gi|187928011|ref|YP_001898498.1| cyclic nucleotide-binding protein [Ralstonia pickettii 12J]
 gi|187724901|gb|ACD26066.1| cyclic nucleotide-binding protein [Ralstonia pickettii 12J]
          Length = 309

 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 35/69 (50%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L AE P +E++L  N+   ++TA +A+Y   Q    P  T   G +    S L++AG   
Sbjct: 45  LIAEGPAEELNLTTNTQPVMLTAAVAVYRAWQAAGGPTPTVVAGHSLGEYSALVAAGAIA 104

Query: 126 MRFALPNAR 134
            + A+P  R
Sbjct: 105 FQDAVPLVR 113


>gi|311030070|ref|ZP_07708160.1| protein export-enhancing factor [Bacillus sp. m3-13]
          Length = 252

 Score = 35.4 bits (80), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 82/178 (46%), Gaps = 26/178 (14%)

Query: 47  VTGQIEDHMATL----------ICAQLLFLEAENPQKEISLYI-NSPGGVVTAGMAIYDT 95
           + GQIE H+             +  Q++ +E +NP  E  L I N+ GG V AG+AI + 
Sbjct: 52  IVGQIEGHVQLPPQNKTTKYEHVIPQIVAIE-QNPNIEGLLVILNTVGGDVEAGLAISEM 110

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           +  +  P  +  +G   S+G  +  + +    F    A + +H      +G    + +  
Sbjct: 111 LASLSKPTVSLVLGGGHSIGVPIAVSCD--YSFIAETATMTIHPVR--LTGLVIGVPQTF 166

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEK------TLDRD---HIMSASEACDWGVVDKV 204
           + + K++ R+     KN G   E+ ++       L RD   +++ A +A ++G++D+V
Sbjct: 167 EYLDKMQDRVINFVTKNSGIPEEKFKELMLSKGNLTRDIGTNVVGA-DAVEYGLIDQV 223


>gi|50304909|ref|XP_452410.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641543|emb|CAH01261.1| KLLA0C04730p [Kluyveromyces lactis]
          Length = 551

 Score = 35.4 bits (80), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           F+E  +P K+I LY+  PG    AG      +  +K  + T  +G+ +  G ++L    +
Sbjct: 233 FVENTSPNKDIKLYLGLPGAASAAGSGYISDLSLLKSTVQT--IGENSHFGGIMLWDASQ 290

Query: 125 GM 126
           G 
Sbjct: 291 GF 292


>gi|114328685|ref|YP_745842.1| signal peptide peptidase sppA [Granulibacter bethesdensis CGDNIH1]
 gi|114316859|gb|ABI62919.1| signal peptide peptidase sppA [Granulibacter bethesdensis CGDNIH1]
          Length = 347

 Score = 35.4 bits (80), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 12/69 (17%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFI--KPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
           K + L INSPGG V  G A++D +  +  + P+ T     AAS G ++          A 
Sbjct: 119 KAVLLEINSPGGTVAGGEALHDALAQLAARKPLVTTMESVAASAGYMI----------AA 168

Query: 131 PNARILLHQ 139
           P+ARI   Q
Sbjct: 169 PSARIFARQ 177


>gi|220905589|ref|YP_002480901.1| signal peptide peptidase SppA, 36K type [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219869888|gb|ACL50223.1| signal peptide peptidase SppA, 36K type [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 383

 Score = 35.4 bits (80), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 10/93 (10%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQ-KEISLYINSPGGVVTAGMAIYDTMQFI--K 100
           +V VTG I +   TL   + L   A NP  K + + ++SPGG   A   +YD ++ +  K
Sbjct: 117 LVSVTGPIMNVEPTL---EWLRTVARNPSVKGVLVRVDSPGGGAAASQEVYDALKNLAQK 173

Query: 101 PPISTFCMGQAASMGSLLLS-AGEKGMRFALPN 132
            P++   MG  A+ G L++S AG++   FA P+
Sbjct: 174 MPVAV-SMGSMAASGGLMVSMAGQR--VFANPS 203


>gi|224143118|ref|XP_002335992.1| predicted protein [Populus trichocarpa]
 gi|222837882|gb|EEE76247.1| predicted protein [Populus trichocarpa]
          Length = 229

 Score = 35.4 bits (80), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 8/122 (6%)

Query: 89  GMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR---ILLHQPSGGFS 145
           G+AIY+ ++  +  ++   +G AAS GS++  AG+      +  AR   +++H       
Sbjct: 37  GLAIYNLLREHEGEVNVKVLGLAASAGSVIAMAGDT-----VQIARAGFLMIHNAWVVAM 91

Query: 146 GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           G  +D+   A  +      + +IY    G   + + K +D +  +  + A + G  D++L
Sbjct: 92  GNRNDLRELAAWLEPFDAAMGDIYASRTGLEAKAIAKLMDSESWIGGAAAVEQGFADELL 151

Query: 206 MS 207
            S
Sbjct: 152 AS 153


>gi|317132346|ref|YP_004091660.1| peptidase S14 ClpP [Ethanoligenens harbinense YUAN-3]
 gi|315470325|gb|ADU26929.1| peptidase S14 ClpP [Ethanoligenens harbinense YUAN-3]
          Length = 319

 Score = 35.4 bits (80), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 16/104 (15%)

Query: 47  VTGQIEDHMA----------TLICAQLLFLEAENPQKE-ISLYINSPGGVVTAGMAIYDT 95
           + GQ+E H              +  Q++ +E E+P+ E + + +N+ GG V AG+AI + 
Sbjct: 70  IIGQVEGHFILPPQNKTTKYEHVIPQIVAVE-EDPRIEGLLIVLNTVGGDVEAGLAIAEL 128

Query: 96  MQFIKPPISTFCMGQAASMG-SLLLSAGEKGMRFALPNARILLH 138
           +  +K P  +  +G   S+G  L + A E    F  P A + +H
Sbjct: 129 ISGMKKPTVSLVLGGGHSIGVPLAICASES---FIAPTATMTIH 169


>gi|160880890|ref|YP_001559858.1| peptidase S14 ClpP [Clostridium phytofermentans ISDg]
 gi|160429556|gb|ABX43119.1| peptidase S14 ClpP [Clostridium phytofermentans ISDg]
          Length = 316

 Score = 35.4 bits (80), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 20/158 (12%)

Query: 59  ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLL 118
           +  QL  +E +     + + IN+ GG V+ G+A+ + +  +  P  +  +G + S+G  L
Sbjct: 146 VLPQLATIEDDTETDGLLILINTVGGDVSCGLALAEMIASLSKPTVSLVIGDSHSIGVPL 205

Query: 119 LSAGEKGMRFALPNARILLH--QPSGGFSG--QASDIERHAQDIV--------KIKRRLN 166
             A      F +P   +++H  + SG   G  Q  D  +  QD +        KIK+   
Sbjct: 206 AVA--TNYSFIVPTGTMIVHPVRMSGMVIGAPQTYDYFKLIQDRIVGFVSSHSKIKKEKL 263

Query: 167 EIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           E  + N G   +      D   I+   EA   G++++V
Sbjct: 264 EQLMLNTGMLSK------DLGTILVGDEAVAEGIINEV 295


>gi|329929297|ref|ZP_08283050.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Paenibacillus sp. HGF5]
 gi|328936666|gb|EGG33109.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Paenibacillus sp. HGF5]
          Length = 258

 Score = 35.4 bits (80), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 82/177 (46%), Gaps = 24/177 (13%)

Query: 47  VTGQIEDHMATL----------ICAQLLFLEAENPQKEISLYI-NSPGGVVTAGMAIYDT 95
           + GQIE H+             +  QL+  E +NP+ E  L I N+ GG V AG+AI + 
Sbjct: 60  IIGQIEGHLVLPPQNKTTKYEHMIPQLVAAE-QNPRIEGLLIILNTVGGDVEAGLAIAEM 118

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           +  +  P  T  +G   S+G  +  A +        +A + +H      SG    + +  
Sbjct: 119 IASLSKPTVTVVIGGGHSIGVPIAVAADH--SIIAESATMTIHPIR--MSGLVIGVPQTF 174

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVE----KT--LDRD--HIMSASEACDWGVVDKV 204
           + + K++ R+      + G T E+ +    KT  L+RD    +S ++A  +G++++V
Sbjct: 175 EYMEKMQERVVRFVTSHSGITEEQFKDLMFKTGELNRDIGTAVSGTDAVKYGLMNEV 231


>gi|269849077|gb|ACZ49687.1| ATP-dependent Clp protease proteolytic subunit [Volvox carteri f.
           nagariensis]
 gi|269849079|gb|ACZ49688.1| ATP-dependent Clp protease proteolytic subunit [Volvox carteri f.
           nagariensis]
 gi|269849081|gb|ACZ49689.1| ATP-dependent Clp protease proteolytic subunit [Volvox carteri f.
           nagariensis]
 gi|269849083|gb|ACZ49690.1| ATP-dependent Clp protease proteolytic subunit [Volvox carteri f.
           nagariensis]
 gi|269849085|gb|ACZ49691.1| ATP-dependent Clp protease proteolytic subunit [Volvox carteri f.
           nagariensis]
 gi|269849087|gb|ACZ49692.1| ATP-dependent Clp protease proteolytic subunit [Volvox carteri f.
           nagariensis]
 gi|269849089|gb|ACZ49693.1| ATP-dependent Clp protease proteolytic subunit [Volvox carteri f.
           nagariensis]
          Length = 380

 Score = 35.4 bits (80), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 24/41 (58%)

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMG 109
           E   K++ + INS GG V  G+ ++D +QFIK    T  +G
Sbjct: 312 EEESKKVFMIINSFGGSVGNGITVHDALQFIKAGSLTLALG 352


>gi|15614960|ref|NP_243263.1| hypothetical protein BH2397 [Bacillus halodurans C-125]
 gi|14548276|sp|Q9KA93|TEPA_BACHD RecName: Full=Translocation-enhancing protein TepA
 gi|10175017|dbj|BAB06116.1| BH2397 [Bacillus halodurans C-125]
          Length = 256

 Score = 35.4 bits (80), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 76/178 (42%), Gaps = 22/178 (12%)

Query: 45  VFVTGQIEDHMATL----------ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           + V GQIE HM             I  QL+  E     + + + +N+ GG V AG+AI +
Sbjct: 55  ITVVGQIEGHMQLPPQNKTTKYEHIIPQLVAAEQNKKIEGLLIILNTVGGDVEAGLAIAE 114

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            +  +  P  T  +G   S+G  +  A      F    A + +H      +G    + + 
Sbjct: 115 MVATMSKPTVTLVLGGGHSIGVPIAVAAN--YSFIAETATMTIHPVR--LTGLVIGVPQT 170

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEK------TLDRD--HIMSASEACDWGVVDKV 204
            + + K++ R+     K+   + E+ ++       L RD    +  ++A  +G++D+V
Sbjct: 171 FEYLDKMQERVVSFVTKHSHISEEKFKELMFSKGNLTRDIGTNVIGTDAVTYGLIDEV 228


>gi|323344780|ref|ZP_08085004.1| L-rhamnose isomerase [Prevotella oralis ATCC 33269]
 gi|323094050|gb|EFZ36627.1| L-rhamnose isomerase [Prevotella oralis ATCC 33269]
          Length = 416

 Score = 35.0 bits (79), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV-EKTLDRDHI 189
           Q +G + G+A +I+   QDIVK+K  +   Y  N  +TY E   K +DR+ +
Sbjct: 60  QATGNYPGKARNIDELRQDIVKVKSLIGGTYRFNLHETYGEFGGKQVDRNEV 111


>gi|147677625|ref|YP_001211840.1| protease subunit of ATP-dependent Clp proteases [Pelotomaculum
           thermopropionicum SI]
 gi|146273722|dbj|BAF59471.1| protease subunit of ATP-dependent Clp proteases [Pelotomaculum
           thermopropionicum SI]
          Length = 286

 Score = 35.0 bits (79), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 10/79 (12%)

Query: 47  VTGQIEDHMATL----------ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           + GQIE H+             +  QL+ LE     + I + +N+ GG V AG+AI + +
Sbjct: 82  IVGQIEGHLVLPPQNKTTKYEHVIPQLVALEQAPEVEGILIVLNTVGGDVEAGLAIAEVI 141

Query: 97  QFIKPPISTFCMGQAASMG 115
             I  P  +  +G   S+G
Sbjct: 142 ASISKPTVSVVLGGGHSIG 160


>gi|261407921|ref|YP_003244162.1| peptidase S14 ClpP [Paenibacillus sp. Y412MC10]
 gi|261284384|gb|ACX66355.1| peptidase S14 ClpP [Paenibacillus sp. Y412MC10]
          Length = 258

 Score = 35.0 bits (79), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 82/177 (46%), Gaps = 24/177 (13%)

Query: 47  VTGQIEDHMATL----------ICAQLLFLEAENPQKEISLYI-NSPGGVVTAGMAIYDT 95
           + GQIE H+             +  QL+  E +NP+ E  L I N+ GG V AG+AI + 
Sbjct: 60  IIGQIEGHLVLPPQNKTTKYEHMIPQLVAAE-QNPRIEGLLIILNTVGGDVEAGLAIAEM 118

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           +  +  P  T  +G   S+G  +  A +        +A + +H      SG    + +  
Sbjct: 119 IASLSKPTVTVVIGGGHSIGVPIAVAADH--SIIAESATMTIHPIR--MSGLVIGVPQTF 174

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVE----KT--LDRD--HIMSASEACDWGVVDKV 204
           + + K++ R+      + G T E+ +    KT  L+RD    +S ++A  +G++++V
Sbjct: 175 EYMEKMQERVVRFVTSHSGITEEQFKDLMFKTGELNRDIGTAVSGADAVKYGLMNEV 231


>gi|297566631|ref|YP_003685603.1| hypothetical protein Mesil_2227 [Meiothermus silvanus DSM 9946]
 gi|296851080|gb|ADH64095.1| protein of unknown function DUF107 [Meiothermus silvanus DSM 9946]
          Length = 424

 Score = 35.0 bits (79), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 8/99 (8%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           L K  ++ + G I+  +AT +   L   E E     + LY+++PGG V A M + D  + 
Sbjct: 16  LAKTYVIPIEGAIDLPLATFLEQSLDRAEREG-ASGVVLYVDTPGGRVDAAMRMSD--RI 72

Query: 99  IKPPISTFCMGQAA-SMGSLL-LSAGEKGMRFALPNARI 135
           +  P+ TF + Q A S G+L+ LSA +  M   LP + I
Sbjct: 73  LASPLPTFAVVQNAFSAGALISLSAQQIAM---LPGSEI 108


>gi|291563562|emb|CBL42378.1| Protease subunit of ATP-dependent Clp proteases [butyrate-producing
           bacterium SS3/4]
          Length = 224

 Score = 35.0 bits (79), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 4/96 (4%)

Query: 59  ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLL 118
           I  +L  +E++     + + +N+ GG V+ G+A+ + +  +  P  +  +G + S+G  L
Sbjct: 58  ILPELAKVESDEKIGGVLILVNTIGGDVSCGLALAEMIASLSKPTVSLVIGDSHSIGVPL 117

Query: 119 LSAGEKGMRFALPNARILLH--QPSGGFSGQASDIE 152
             A +    F +P   +L+H  + SG   G A   E
Sbjct: 118 AVASD--YSFIVPTGTMLVHPVRMSGMVIGTAQTYE 151


>gi|261418196|ref|YP_003251878.1| signal peptide peptidase SppA, 36K type [Geobacillus sp. Y412MC61]
 gi|319767844|ref|YP_004133345.1| signal peptide peptidase SppA, 36K type [Geobacillus sp. Y412MC52]
 gi|261374653|gb|ACX77396.1| signal peptide peptidase SppA, 36K type [Geobacillus sp. Y412MC61]
 gi|317112710|gb|ADU95202.1| signal peptide peptidase SppA, 36K type [Geobacillus sp. Y412MC52]
          Length = 335

 Score = 35.0 bits (79), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 31/63 (49%), Gaps = 6/63 (9%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIK----PPISTFCMGQAASMGSLLLSAGEKGMRF 128
           K I L INSPGG V     IYD +  +K     PI       AAS G  + +AG+K   F
Sbjct: 105 KAIILRINSPGGGVAESAEIYDQLMKLKKKTNKPIYVSMGAMAASGGYYIAAAGDK--IF 162

Query: 129 ALP 131
           A P
Sbjct: 163 ASP 165


>gi|332179696|gb|AEE15385.1| signal peptide peptidase SppA, 36K type [Thermodesulfobium
           narugense DSM 14796]
          Length = 289

 Score = 35.0 bits (79), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 8/92 (8%)

Query: 47  VTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK----PP 102
           + G I D  +  + + +   + +   + I L +NSPGG V A   I++T+   K     P
Sbjct: 40  INGTINDQTSESVSSAIRRAKQDPNIRGILLRVNSPGGSVGASQEIFETLMNYKESTGKP 99

Query: 103 ISTFCMGQAASMGSLLLS-AGEKGMRFALPNA 133
           I    MG  A+ G   +S AG+K   FALP+ 
Sbjct: 100 I-IVSMGDVAASGGYYVSLAGDK--IFALPST 128


>gi|260587637|ref|ZP_05853550.1| translocation-enhancing protein TepA [Blautia hansenii DSM 20583]
 gi|260541902|gb|EEX22471.1| translocation-enhancing protein TepA [Blautia hansenii DSM 20583]
          Length = 256

 Score = 35.0 bits (79), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 29/155 (18%), Positives = 71/155 (45%), Gaps = 16/155 (10%)

Query: 59  ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLL 118
           +  +L  +E       + + +N+ GG V AG+AI + +  +  P  +  +G   S+G  +
Sbjct: 85  VLPKLAMIEDSKETDGLLILLNTVGGDVEAGLAIAEMIASLSKPTVSLVLGGGHSIGVPM 144

Query: 119 LSAGEKGMRFALPNARILLH--QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
             + +    + +P+A +++H  + +G F G    + +  +++ KI+ R+      +    
Sbjct: 145 AVSAD--YSYIVPSATMVIHPVRSNGMFIG----VMQTYRNMEKIQDRITRFIASHSKMP 198

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDK 203
            + +E+ +        D   ++   EA   G++D+
Sbjct: 199 QKRIEQLMLDTSQLVKDVGTMLEGEEAVKEGLIDE 233


>gi|56421326|ref|YP_148644.1| protease [Geobacillus kaustophilus HTA426]
 gi|56381168|dbj|BAD77076.1| protease IV (signal peptide peptidase) [Geobacillus kaustophilus
           HTA426]
          Length = 335

 Score = 35.0 bits (79), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 31/63 (49%), Gaps = 6/63 (9%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIK----PPISTFCMGQAASMGSLLLSAGEKGMRF 128
           K I L INSPGG V     IYD +  +K     PI       AAS G  + +AG+K   F
Sbjct: 105 KAIILRINSPGGGVAESAEIYDQLMKLKKKTNKPIYVSMGAMAASGGYYIAAAGDK--IF 162

Query: 129 ALP 131
           A P
Sbjct: 163 ASP 165


>gi|294665723|ref|ZP_06730997.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|292604507|gb|EFF47884.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
          Length = 215

 Score = 35.0 bits (79), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 12/136 (8%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE-----KGMRFA 129
           I L I+SPGG V A  A+   +   K  +     G AAS  + +  A +     +G  F 
Sbjct: 31  IHLRIDSPGGDVFAARAMMTAIAQHKATVIAHVDGLAASAATGICMACDEVEITQGAGFM 90

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           + NA  +         G  +D+ +  + + KI   L   Y +  G    +V + ++ +  
Sbjct: 91  IHNAWTIA-------IGNKADMAKTGELLGKIDDGLAGDYTRRTGNEVAQVVQWMNDETW 143

Query: 190 MSASEACDWGVVDKVL 205
            +A EA + G  D+V+
Sbjct: 144 FTADEAKEHGFADRVI 159


>gi|300691985|ref|YP_003752980.1| Malonyl CoA-acyl carrier protein transacylase [Ralstonia
           solanacearum PSI07]
 gi|299079045|emb|CBJ51707.1| Malonyl CoA-acyl carrier protein transacylase [Ralstonia
           solanacearum PSI07]
          Length = 309

 Score = 35.0 bits (79), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 34/69 (49%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L AE P  E++L  N+   ++TA +A+Y   Q    P  T   G +    S L++AG   
Sbjct: 45  LIAEGPADELNLTANTQPVMLTAAVAVYRAWQAAGGPAPTVVAGHSLGEYSALVAAGAIA 104

Query: 126 MRFALPNAR 134
            + A+P  R
Sbjct: 105 FKDAVPLVR 113


>gi|146307288|ref|YP_001187753.1| peptidase S14, ClpP [Pseudomonas mendocina ymp]
 gi|145575489|gb|ABP85021.1| peptidase S14, ClpP [Pseudomonas mendocina ymp]
          Length = 183

 Score = 35.0 bits (79), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 2/65 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           E+ + I + GG  + G ++Y+ +  +  P+ T  +G   SMG+++  AG+   R A  ++
Sbjct: 34  ELVIKIATMGGECSYGFSLYNFLISLPVPVKTHNLGTVESMGNIIFLAGQT--RTACQHS 91

Query: 134 RILLH 138
           + L H
Sbjct: 92  KFLFH 96


>gi|319902220|ref|YP_004161948.1| peptidase S14 ClpP [Bacteroides helcogenes P 36-108]
 gi|319417251|gb|ADV44362.1| peptidase S14 ClpP [Bacteroides helcogenes P 36-108]
          Length = 378

 Score = 35.0 bits (79), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 21/37 (56%)

Query: 169 YVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           Y   C KT ++V   +     M +SEA DWG VDKV+
Sbjct: 163 YADRCKKTVKDVIGLMSESRWMPSSEAKDWGFVDKVI 199


>gi|297529049|ref|YP_003670324.1| signal peptide peptidase SppA, 36K type [Geobacillus sp. C56-T3]
 gi|297252301|gb|ADI25747.1| signal peptide peptidase SppA, 36K type [Geobacillus sp. C56-T3]
          Length = 335

 Score = 35.0 bits (79), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 31/63 (49%), Gaps = 6/63 (9%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIK----PPISTFCMGQAASMGSLLLSAGEKGMRF 128
           K I L INSPGG V     IYD +  +K     PI       AAS G  + +AG+K   F
Sbjct: 105 KAIILRINSPGGGVAESAEIYDQLMKLKKKTNKPIYVSMGAMAASGGYYIAAAGDK--IF 162

Query: 129 ALP 131
           A P
Sbjct: 163 ASP 165


>gi|239626582|ref|ZP_04669613.1| peptidase S14 ClpP [Clostridiales bacterium 1_7_47_FAA]
 gi|239516728|gb|EEQ56594.1| peptidase S14 ClpP [Clostridiales bacterium 1_7_47FAA]
          Length = 252

 Score = 35.0 bits (79), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 38/184 (20%), Positives = 81/184 (44%), Gaps = 26/184 (14%)

Query: 41  KERIVFVTGQIEDHMAT----------LICAQLLFLEAENPQKEISLYINSPGGVVTAGM 90
           K  ++ + G++E H  +           I  +L  +E ++    + + +N+ GG V AG+
Sbjct: 54  KIHLITIIGEVEGHENSSGSSKTTKYDHILPKLAEIEDDDSVDGLLVLLNTSGGDVDAGL 113

Query: 91  AIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH--QPSGGFSGQA 148
           AI + +  +  P  +  +G + S+G  L  A      F +P+  +++H  + +G   G A
Sbjct: 114 AIAEMIASLSLPTVSLVLGGSHSIGVPL--AVSTNYSFIVPSGTMMIHPVRMTGMVIGTA 171

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVE------KTLDRD--HIMSASEACDWGV 200
              E        I+ R+      +    Y+++       K L RD   ++   +A + G+
Sbjct: 172 QTYEYFEM----IQDRILTFVASHADIAYDQLRDLMHNTKMLTRDLGTVLVGEQAVEAGL 227

Query: 201 VDKV 204
           +++V
Sbjct: 228 INQV 231


>gi|331084073|ref|ZP_08333180.1| hypothetical protein HMPREF0992_02104 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330402435|gb|EGG82005.1| hypothetical protein HMPREF0992_02104 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 234

 Score = 35.0 bits (79), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 29/156 (18%), Positives = 71/156 (45%), Gaps = 16/156 (10%)

Query: 59  ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLL 118
           +  +L  +E       + + +N+ GG V AG+AI + +  +  P  +  +G   S+G  +
Sbjct: 63  VLPKLAMIEDSKETDGLLILLNTVGGDVEAGLAIAEMIASLSKPTVSLVLGGGHSIGVPM 122

Query: 119 LSAGEKGMRFALPNARILLH--QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
             + +    + +P+A +++H  + +G F G    + +  +++ KI+ R+      +    
Sbjct: 123 AVSAD--YSYIVPSATMVIHPVRSNGMFIG----VMQTYRNMEKIQDRITRFIASHSKMP 176

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
            + +E+ +        D   ++   EA   G++D+ 
Sbjct: 177 QKRIEQLMLDTSQLVKDVGTMLEGEEAVKEGLIDET 212


>gi|315648078|ref|ZP_07901179.1| peptidase S14 ClpP [Paenibacillus vortex V453]
 gi|315276724|gb|EFU40067.1| peptidase S14 ClpP [Paenibacillus vortex V453]
          Length = 258

 Score = 35.0 bits (79), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 79/177 (44%), Gaps = 24/177 (13%)

Query: 47  VTGQIEDHMATL----------ICAQLLFLEAENPQKE-ISLYINSPGGVVTAGMAIYDT 95
           + GQIE H+             +  QL+  E +NP+ E + + +N+ GG V AG+AI + 
Sbjct: 60  IIGQIEGHLVLPPQNKTTKYEHMIPQLVAAE-QNPRIEGLLIILNTVGGDVEAGLAIAEM 118

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           +  +  P  T  +G   S+G  +  A +        +A + +H      SG    + +  
Sbjct: 119 IASLSKPTVTVVIGGGHSIGVPIAVAADH--SIIAESATMTIHPIR--MSGLVIGVPQTF 174

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKT------LDRD--HIMSASEACDWGVVDKV 204
           + + K++ R+      + G T E  +        L+RD    +S  +A  +G++D+V
Sbjct: 175 EYMEKMQERVVRFVTSHSGITEERFKNLMFATGELNRDIGTAVSGVDAVKYGLMDEV 231


>gi|254410663|ref|ZP_05024442.1| signal peptide peptidase SppA, 67K type [Microcoleus chthonoplastes
           PCC 7420]
 gi|196182869|gb|EDX77854.1| signal peptide peptidase SppA, 67K type [Microcoleus chthonoplastes
           PCC 7420]
          Length = 593

 Score = 35.0 bits (79), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 82/199 (41%), Gaps = 36/199 (18%)

Query: 44  IVFVTGQIEDHMATL-------ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           +++ +G+I D   ++         AQ+  L  ++  K + L +NSPGG  TA   I   +
Sbjct: 310 VLYASGEIVDGEGSVQEVGGESFAAQMRKLRLDDSVKAVVLRVNSPGGSATASEIIQREV 369

Query: 97  QFI---KPPISTFCMGQAASMGSLLLS-------------AGEKGMRFALPNARILLHQ- 139
           +     KP I    MG  A+ G   +S              G  G+   L N + + ++ 
Sbjct: 370 KLTRDSKPVI--ISMGDIAASGGYWISTYGNRIFAEPNTVTGSIGVFGLLMNVQQIANEN 427

Query: 140 -------PSGGFSG-QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
                   +G F+  Q     +  Q++  I++ ++++Y K   K  E   + L +D +  
Sbjct: 428 GITWDVVKTGRFADTQTVSRPKTTQELALIQKIVDQVYSKFLDKVAE--SRKLPKDKVAQ 485

Query: 192 ASEACDWGVVDKVLMSRID 210
            ++   W  +D   +  +D
Sbjct: 486 IAQGRVWSGIDAKQLGLVD 504


>gi|260577759|ref|ZP_05845694.1| ClpP protease family protein [Corynebacterium jeikeium ATCC 43734]
 gi|258604154|gb|EEW17396.1| ClpP protease family protein [Corynebacterium jeikeium ATCC 43734]
          Length = 473

 Score = 34.7 bits (78), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 31/157 (19%), Positives = 65/157 (41%), Gaps = 1/157 (0%)

Query: 59  ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLL 118
           I A+ +  +      ++++ I+S GG V  G+ I   ++     ++      AAS  S +
Sbjct: 21  ITAKSVMAQLSEISGDVTVRISSGGGDVYEGVDIMTALKNHDGEVTVIVESLAASAASFI 80

Query: 119 LSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYE 178
              G   +     ++ ++LH+      G A D+ +   D+ +   +L  IY    G   +
Sbjct: 81  AVGGADRV-LMRKSSEMMLHRAWTLAEGNADDVRKTLGDLERQDNKLAAIYAGKAGGEVQ 139

Query: 179 EVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
           +    +  +   +A EA   G+ D ++  +    E S
Sbjct: 140 DWLDAMSAETWYTAEEAVAAGLADGIVAEKSSAPEPS 176


>gi|90411695|ref|ZP_01219704.1| hypothetical ClpP family serine protease, possible phage related
           [Photobacterium profundum 3TCK]
 gi|90327257|gb|EAS43621.1| hypothetical ClpP family serine protease, possible phage related
           [Photobacterium profundum 3TCK]
          Length = 261

 Score = 34.7 bits (78), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 2/132 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K I L INSPGG V A   +   ++  K  ++    G AAS  S L  AG++ +      
Sbjct: 70  KNIHLRINSPGGSVFAARTMEQALREHKATVTVHIDGLAASAASFLAMAGDEII--IGEG 127

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A +++H+      G A D+   A  + K+   L + Y K  G   +     +  +   +A
Sbjct: 128 AMMMIHKAWTVSWGNADDLLAEAALLEKLDGTLAKTYAKRAGGDEKTFSDYMRNETWFTA 187

Query: 193 SEACDWGVVDKV 204
            EA   G+ D V
Sbjct: 188 DEAVAAGIADTV 199


>gi|317121875|ref|YP_004101878.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Thermaerobacter marianensis DSM 12885]
 gi|315591855|gb|ADU51151.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Thermaerobacter marianensis DSM 12885]
          Length = 347

 Score = 34.7 bits (78), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 53/106 (50%), Gaps = 14/106 (13%)

Query: 44  IVFVTGQIEDHMATL----------ICAQLLFLEAENPQ-KEISLYINSPGGVVTAGMAI 92
           ++ + GQ+E H+             I  QL+ +E +NP  K + + +N+ GG V AG+A+
Sbjct: 71  VLTIVGQVEGHLQLPAQNKTTKYEHIIPQLVAVE-QNPAIKGLLVILNTVGGDVEAGLAL 129

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
            + ++ +  P  +  +G   S+G  +  A +  + F  P A + +H
Sbjct: 130 AELIRSLSKPKVSIVLGGGHSIGVPIAVAAD--ISFIAPTATMTIH 173


>gi|242398666|ref|YP_002994090.1| NfeD nodulation like protein, probable membrane protein
           [Thermococcus sibiricus MM 739]
 gi|242265059|gb|ACS89741.1| NfeD nodulation like protein, probable membrane protein
           [Thermococcus sibiricus MM 739]
          Length = 451

 Score = 34.7 bits (78), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 7/153 (4%)

Query: 67  EAENPQKE-ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM---GQAASMGSLLLSAG 122
           EAE      I + +++PGG   A   I + ++  + P+ T+     G AAS G+ + + G
Sbjct: 50  EAERANANAIIILLDTPGGRADAMQNIIERIKSAEVPVITYVYPPGGMAASAGTYI-ALG 108

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
              +  A P   I   +P  G+S   S IE   + +V       +   K  G+    VEK
Sbjct: 109 SHLIAMA-PGTSIGACRPILGYSQNGSIIEAPPK-VVNFYASYIKSLAKASGRNETMVEK 166

Query: 183 TLDRDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
            +  D  +   EA + GV++ +     D+ EK+
Sbjct: 167 FITEDLAIDPEEALNSGVIEVIANDVNDLLEKA 199


>gi|121535282|ref|ZP_01667096.1| peptidase S14, ClpP [Thermosinus carboxydivorans Nor1]
 gi|121306167|gb|EAX47095.1| peptidase S14, ClpP [Thermosinus carboxydivorans Nor1]
          Length = 260

 Score = 34.7 bits (78), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 83/183 (45%), Gaps = 28/183 (15%)

Query: 43  RIVFVTGQIEDHMATL----------ICAQLLFLEAENPQKE-ISLYINSPGGVVTAGMA 91
            ++ + GQIE HM             +  Q+  +E +NP  E + L +N+ GG V AG+A
Sbjct: 60  HVMTIIGQIEGHMVLPPQNKTTKYEHVMPQIAAIE-QNPDIEGLLLLLNTVGGDVEAGLA 118

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH--QPSGGFSGQAS 149
           I + +  +  P  +  +G   S+G  +  A      F + +A + +H  + +G   G  S
Sbjct: 119 IAELIASLSKPTVSLVLGGGHSIGVPI--AVSANYSFIVESASMTIHPIRLTGLVIGAPS 176

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS--------ASEACDWGVV 201
             +     + K++ R+N   V +   T ++ ++ L +   +S          +A  +G++
Sbjct: 177 SFDY----LEKMQERINRFVVSHSKITEKKWKELLFKTGELSRDIGTNVVGRDAVRYGLI 232

Query: 202 DKV 204
           D++
Sbjct: 233 DEL 235


>gi|329910999|ref|ZP_08275428.1| hypothetical protein IMCC9480_360 [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546015|gb|EGF31093.1| hypothetical protein IMCC9480_360 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 186

 Score = 34.7 bits (78), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 27/130 (20%), Positives = 60/130 (46%), Gaps = 4/130 (3%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           + + S GG V+ G+ +Y+T++     +  +  G  AS+   +  AG++  R A   AR +
Sbjct: 45  ILLQSNGGYVSDGICLYNTLRNAPLDLVMYNGGAVASIAVTVFLAGQR--RIASDTARFM 102

Query: 137 LHQ--PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           +H+   + G   +   ++  A  ++   RR   I  ++   T    +     D  +S  +
Sbjct: 103 IHKSHATAGVGARPETLQIIADGLMADDRRTEAILRRHIKLTQRMWDVHAHSDLHLSPQD 162

Query: 195 ACDWGVVDKV 204
           A D  +++++
Sbjct: 163 ALDTRLIERL 172


>gi|95929491|ref|ZP_01312234.1| signal peptide peptidase SppA, 36K type [Desulfuromonas acetoxidans
           DSM 684]
 gi|95134607|gb|EAT16263.1| signal peptide peptidase SppA, 36K type [Desulfuromonas acetoxidans
           DSM 684]
          Length = 298

 Score = 34.7 bits (78), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 7/84 (8%)

Query: 41  KERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD---TMQ 97
           K  ++ V G I D  A  I  QL+     +  K I L ++SPGG V     IYD    + 
Sbjct: 42  KVGVIEVLGTITDSKA--IVDQLIDFGQNHAVKAIVLRVDSPGGGVGPSQEIYDEVVRLT 99

Query: 98  FIKPPISTFCMGQAASMGSLLLSA 121
            +KP +    MG  A+ G   +SA
Sbjct: 100 ALKPVV--VSMGSVAASGGYYISA 121


>gi|160939827|ref|ZP_02087174.1| hypothetical protein CLOBOL_04718 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437261|gb|EDP15026.1| hypothetical protein CLOBOL_04718 [Clostridium bolteae ATCC
           BAA-613]
          Length = 315

 Score = 34.7 bits (78), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 25/111 (22%), Positives = 52/111 (46%), Gaps = 12/111 (10%)

Query: 38  RLLKERIVFVTGQIEDHMAT----------LICAQLLFLEAENPQKEISLYINSPGGVVT 87
           R  K  ++ + G++E H  +           I  +L  +E ++    + + +N+ GG V 
Sbjct: 114 RQRKIHLITIIGEVEGHENSSGSSKTTKYDHILPKLAEIEDDDSVDGLLVLLNTSGGDVD 173

Query: 88  AGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           AG+AI + +  +  P  +  +G + S+G  L  A      F +P+  +++H
Sbjct: 174 AGLAIAEMIASLSLPTVSLVLGGSHSIGVPL--AVSTNYSFIVPSGTMMIH 222


>gi|299822749|ref|ZP_07054635.1| signal peptide peptidase SppA [Listeria grayi DSM 20601]
 gi|299816278|gb|EFI83516.1| signal peptide peptidase SppA [Listeria grayi DSM 20601]
          Length = 338

 Score = 34.7 bits (78), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 62  QLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP----PISTFCMGQAASMGSL 117
           QL  +EA+   K I +Y+NSPGG V     I D +  IK     P+       AAS G  
Sbjct: 96  QLKQIEADKSVKGILMYVNSPGGGVMESAQIRDKLLEIKKKRKLPVYVSMGSMAASGGYY 155

Query: 118 LLSAGEK 124
           + +A +K
Sbjct: 156 ISTAADK 162


>gi|188585819|ref|YP_001917364.1| protein of unknown function DUF107 [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350506|gb|ACB84776.1| protein of unknown function DUF107 [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 458

 Score = 34.7 bits (78), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 2/82 (2%)

Query: 47  VTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTF 106
           V G IE  ++  +       + EN    I L IN+PGG + A   I D +   + P+  F
Sbjct: 47  VEGNIERGLSAFLNRAFESAQEENADL-IVLDINTPGGALDASFEIKDLIVNEEIPVYAF 105

Query: 107 CMGQAASMGSLL-LSAGEKGMR 127
              QA S GS L L++ E  MR
Sbjct: 106 VNSQAISAGSYLALASDEIYMR 127


Searching..................................................done


Results from round 2




>gi|254780272|ref|YP_003064685.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254039949|gb|ACT56745.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 216

 Score =  315 bits (808), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 216/216 (100%), Positives = 216/216 (100%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC
Sbjct: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS
Sbjct: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV
Sbjct: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           EKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK
Sbjct: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216


>gi|119898362|ref|YP_933575.1| ATP-dependent Clp protease proteolytic subunit [Azoarcus sp. BH72]
 gi|166201798|sp|A1K783|CLPP_AZOSB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|119670775|emb|CAL94688.1| Endopeptidase Clp [Azoarcus sp. BH72]
          Length = 212

 Score =  307 bits (788), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 131/205 (63%), Positives = 163/205 (79%)

Query: 7   AKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
                + V LGL+PMVVEQ+ RGERSYDIYSRLLKER+VF+ G + D  A LI AQLLFL
Sbjct: 8   HSSAWDPVGLGLIPMVVEQSGRGERSYDIYSRLLKERVVFLVGPVNDVTANLIVAQLLFL 67

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E+ENP K+I  YINSPGG VTAG+AIYDTMQFIKP +ST C+GQAASMG+ LL+AGEKG 
Sbjct: 68  ESENPDKDIYFYINSPGGSVTAGLAIYDTMQFIKPNVSTLCIGQAASMGAFLLAAGEKGK 127

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           RF LPN+R+++HQP GGF GQASDIE HA++I+ ++ RLN +  K+ G+T E++EK  DR
Sbjct: 128 RFCLPNSRVMIHQPLGGFQGQASDIEIHAREILYLRERLNGMLAKHTGQTIEQIEKDTDR 187

Query: 187 DHIMSASEACDWGVVDKVLMSRIDI 211
           D+ MSA+ A ++G+VDKVL SR D 
Sbjct: 188 DNFMSATAAVEYGLVDKVLTSRADT 212


>gi|56478265|ref|YP_159854.1| ATP-dependent Clp protease proteolytic subunit [Aromatoleum
           aromaticum EbN1]
 gi|67460188|sp|Q5P161|CLPP_AZOSE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|56314308|emb|CAI08953.1| ATP-dependent Clp protease proteolytic subunit [Aromatoleum
           aromaticum EbN1]
          Length = 212

 Score =  304 bits (778), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 129/209 (61%), Positives = 165/209 (78%)

Query: 2   SFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICA 61
           S       + + V LGLVPMVVEQ+ RGER+YDIYSRLLKER++F+ G + D  A LI A
Sbjct: 3   SAAPHGSSNWDPVGLGLVPMVVEQSGRGERAYDIYSRLLKERVIFLVGPVNDVTANLIVA 62

Query: 62  QLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSA 121
           QLLFLE+ENP K++  YINSPGG V++GMAIYDTMQFIKP +ST C+GQAASMGS LL+A
Sbjct: 63  QLLFLESENPDKDVYFYINSPGGSVSSGMAIYDTMQFIKPSVSTLCIGQAASMGSFLLAA 122

Query: 122 GEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVE 181
           GEKG RF LPN+R+++HQP GGF GQASDIE HA++I+ I+ +LNE+  K+ G+  E++E
Sbjct: 123 GEKGKRFCLPNSRVMIHQPLGGFQGQASDIEIHAREILGIRAKLNEMLAKHTGQPIEQIE 182

Query: 182 KTLDRDHIMSASEACDWGVVDKVLMSRID 210
           K  DRD  MSA++A ++G+VDKVL +R D
Sbjct: 183 KDTDRDRFMSAADAVEYGIVDKVLTNRAD 211


>gi|237653230|ref|YP_002889544.1| ATP-dependent Clp protease proteolytic subunit [Thauera sp. MZ1T]
 gi|237624477|gb|ACR01167.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thauera sp.
           MZ1T]
          Length = 212

 Score =  302 bits (773), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 133/211 (63%), Positives = 163/211 (77%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           M        D   V LGLVPMVVEQ+ RGER+YDIYSRLLKER+VF+ G + D  A LI 
Sbjct: 2   MQGTPQHSSDWNPVGLGLVPMVVEQSGRGERAYDIYSRLLKERVVFLVGPVNDVTANLIV 61

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE+ENP K+I  YINSPGG VTAGMAIYDTMQFIKP +ST C+GQAASMG+ LL+
Sbjct: 62  AQLLFLESENPDKDIYFYINSPGGSVTAGMAIYDTMQFIKPNVSTLCIGQAASMGAFLLA 121

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AGEKG RF LPN+R+++HQP GGF GQASDIE HA++I+ ++ RLN++  K+ G+  E +
Sbjct: 122 AGEKGKRFILPNSRVMIHQPLGGFQGQASDIEIHAREILYLRSRLNDMLSKHTGQALERI 181

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           EK  DRD+ MSA+ A ++G+VDKVL SR D 
Sbjct: 182 EKDTDRDNFMSATAAVEYGLVDKVLTSRDDT 212


>gi|269102129|ref|ZP_06154826.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268162027|gb|EEZ40523.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 207

 Score =  301 bits (772), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 129/208 (62%), Positives = 165/208 (79%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS++   K     +   LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ 
Sbjct: 1   MSYQ--EKNAMSPILDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE+ENP K+I LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQLLFLESENPDKDIYLYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLA 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
            G KG R+ LPN+R+++HQP GGF GQASDI+ HAQ+I+ IK++LN +  ++ G+  E +
Sbjct: 119 GGAKGKRYCLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKQKLNNLLAEHTGQPLEVI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  DRD+ MSA +A ++G+VD VL  R
Sbjct: 179 ERDTDRDNFMSADQAVEYGLVDAVLSHR 206


>gi|258621302|ref|ZP_05716336.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus
           VM573]
 gi|258625374|ref|ZP_05720271.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus
           VM603]
 gi|262166052|ref|ZP_06033789.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus
           VM223]
 gi|262171083|ref|ZP_06038761.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus
           MB-451]
 gi|258582365|gb|EEW07217.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus
           VM603]
 gi|258586690|gb|EEW11405.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus
           VM573]
 gi|261892159|gb|EEY38145.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus
           MB-451]
 gi|262025768|gb|EEY44436.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus
           VM223]
          Length = 208

 Score =  301 bits (772), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 128/210 (60%), Positives = 165/210 (78%), Gaps = 2/210 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS++   K     +F  LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ 
Sbjct: 1   MSYQ--EKNAMSPIFDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE+ENP K+I LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLA 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
            G  G R+ LPN+R+++HQP GGF GQASDI+ HA++I+ IK +LN +  ++ G+  E +
Sbjct: 119 GGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAKEILTIKNKLNRLLAEHTGQPLEVI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           E+  DRD+ MSA +A ++G+VD VL  R +
Sbjct: 179 ERDTDRDNFMSADQAVEYGLVDAVLKHRGE 208


>gi|270263570|ref|ZP_06191839.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Serratia
           odorifera 4Rx13]
 gi|270042454|gb|EFA15549.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Serratia
           odorifera 4Rx13]
          Length = 207

 Score =  301 bits (772), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 131/208 (62%), Positives = 172/208 (82%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D     + LVPMVVEQT+RGERSYDIYSRLLKERI+F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--ERDQFAPNMALVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAE+P+K+I LYINSPGGV+TAGM+IYDTM+FIKP +ST CMGQA SMGS LL+
Sbjct: 59  AQMLFLEAESPEKDIYLYINSPGGVITAGMSIYDTMKFIKPDVSTICMGQACSMGSFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+  ++ G+T E++
Sbjct: 119 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKARMNELMAEHTGQTLEQI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  M+A EA ++G+VD +L  R
Sbjct: 179 ERDTERDRFMTAEEAVEYGLVDGILTHR 206


>gi|237730414|ref|ZP_04560895.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226905953|gb|EEH91871.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 243

 Score =  301 bits (771), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 130/208 (62%), Positives = 174/208 (83%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D+    + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 37  MSYSG--ERDNFAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIV 94

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 95  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 154

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+   + G++ E++
Sbjct: 155 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQI 214

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SASEA ++G+VD +L  R
Sbjct: 215 ERDTERDRFLSASEAVEYGLVDSILTHR 242


>gi|261210563|ref|ZP_05924856.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. RC341]
 gi|262404275|ref|ZP_06080830.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. RC586]
 gi|260840348|gb|EEX66919.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. RC341]
 gi|262349307|gb|EEY98445.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. RC586]
          Length = 208

 Score =  301 bits (771), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 129/210 (61%), Positives = 165/210 (78%), Gaps = 2/210 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS++   K     +F  LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ 
Sbjct: 1   MSYQ--EKNAMSPIFDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE+ENP K+I LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLA 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
            G  G R+ LPN+R+++HQP GGF GQASDI+ HAQ+I+ IK +LN +  ++ G+  E +
Sbjct: 119 GGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKNKLNRLLAEHTGQPLEVI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           E+  DRD+ MSA +A ++G+VD VL  R +
Sbjct: 179 ERDTDRDNFMSADQAVEYGLVDAVLKHRGE 208


>gi|62126693|gb|AAX64396.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease,
           heat shock protein F215 [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
          Length = 246

 Score =  301 bits (771), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 129/208 (62%), Positives = 173/208 (83%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D+    + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 40  MSYSG--ERDNLAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIV 97

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 98  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 157

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+   + G++ E++
Sbjct: 158 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQI 217

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA EA ++G+VD +L  R
Sbjct: 218 ERDTERDRFLSAPEAVEYGLVDSILTHR 245


>gi|157369338|ref|YP_001477327.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Serratia
           proteamaculans 568]
 gi|157321102|gb|ABV40199.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Serratia
           proteamaculans 568]
          Length = 207

 Score =  301 bits (770), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 131/209 (62%), Positives = 172/209 (82%), Gaps = 2/209 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D     + LVPMVVEQT+RGERSYDIYSRLLKERI+F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--ERDQFAPNMALVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAE+P+K+I LYINSPGGV+TAGM+IYDTM+FIKP +ST CMGQA SMGS LL+
Sbjct: 59  AQMLFLEAESPEKDIFLYINSPGGVITAGMSIYDTMKFIKPDVSTICMGQACSMGSFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+  ++ G+T E++
Sbjct: 119 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKARMNELMAEHTGQTLEQI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           E+  +RD  M+A EA ++G+VD +L  R 
Sbjct: 179 ERDTERDRFMTAEEAVEYGLVDGILTHRK 207


>gi|71907348|ref|YP_284935.1| ATP-dependent Clp protease proteolytic subunit ClpP [Dechloromonas
           aromatica RCB]
 gi|110816458|sp|Q47FB6|CLPP_DECAR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|71846969|gb|AAZ46465.1| ATP-dependent Clp protease proteolytic subunit ClpP [Dechloromonas
           aromatica RCB]
          Length = 209

 Score =  300 bits (769), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 127/208 (61%), Positives = 163/208 (78%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           M+ +  +  D +   LGLVPMVVEQ+ RGER+YDIYSRLLKER++F+ G + D  A L+ 
Sbjct: 1   MNIDNASNWDPQA--LGLVPMVVEQSGRGERAYDIYSRLLKERVIFLVGPVNDVTANLVV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLEAENP K+I  YINSPGG VTAGM+IYDTMQFIKP +ST C+GQAASMG+ LL+
Sbjct: 59  AQLLFLEAENPDKDIYFYINSPGGSVTAGMSIYDTMQFIKPDVSTLCIGQAASMGAFLLN 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RFALPN+R+++HQP GGF GQASDI  HA++I+ I+ RLN I  ++ G+  E +
Sbjct: 119 AGAKGKRFALPNSRVMIHQPLGGFQGQASDIAIHAKEILSIRDRLNRIMAEHSGQPLERI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           EK  DRD+ +SA+EA ++G++DKVL  R
Sbjct: 179 EKDTDRDNFLSAAEAAEYGLIDKVLTRR 206


>gi|237707568|ref|ZP_04538049.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Escherichia
           sp. 3_2_53FAA]
 gi|226898778|gb|EEH85037.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Escherichia
           sp. 3_2_53FAA]
 gi|332103940|gb|EGJ07286.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Shigella sp.
           D9]
          Length = 227

 Score =  300 bits (769), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 129/208 (62%), Positives = 173/208 (83%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D+    + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 21  MSYSG--ERDNFAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIV 78

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 79  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 138

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+   + G++ E++
Sbjct: 139 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQI 198

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA EA ++G+VD +L  R
Sbjct: 199 ERDTERDRFLSAPEAVEYGLVDSILTHR 226


>gi|157146946|ref|YP_001454265.1| hypothetical protein CKO_02723 [Citrobacter koseri ATCC BAA-895]
 gi|157084151|gb|ABV13829.1| hypothetical protein CKO_02723 [Citrobacter koseri ATCC BAA-895]
          Length = 243

 Score =  300 bits (769), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 130/208 (62%), Positives = 174/208 (83%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D+    + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 37  MSYSG--ERDNFAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIV 94

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 95  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 154

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+   + G++ E++
Sbjct: 155 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQI 214

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SASEA ++G+VD +L  R
Sbjct: 215 ERDTERDRFLSASEAVEYGLVDSILTHR 242


>gi|307129927|ref|YP_003881943.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Dickeya dadantii 3937]
 gi|306527456|gb|ADM97386.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Dickeya dadantii 3937]
          Length = 207

 Score =  300 bits (769), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 135/208 (64%), Positives = 172/208 (82%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  +K  +   + LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 1   MSYSGEQEK--QAPHMALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GGF GQA+DIE HA++I+K+K R+NE+  K+ G+  E +
Sbjct: 119 AGTKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKEILKVKARMNELMAKHTGQPLEAI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA+EA D+G+VD VL  R
Sbjct: 179 ERDTERDRFLSAAEAVDYGLVDSVLTHR 206


>gi|323495056|ref|ZP_08100145.1| ATP-dependent Clp protease proteolytic subunit [Vibrio brasiliensis
           LMG 20546]
 gi|323310713|gb|EGA63888.1| ATP-dependent Clp protease proteolytic subunit [Vibrio brasiliensis
           LMG 20546]
          Length = 208

 Score =  300 bits (769), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 129/210 (61%), Positives = 165/210 (78%), Gaps = 2/210 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS++   K     +   LVPMVVEQT+RGERSYDIYSRLLKERI+F+TGQ+EDHMA L+ 
Sbjct: 1   MSYQ--EKNAMSPILDALVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLVV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE+ENP K+I LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLA 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
            G  G R  LPN+R+++HQP GGF GQASDI+ HAQ+I+ IK++LN++  ++ G+  E +
Sbjct: 119 GGAPGKRHVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKQKLNKLLAEHTGQPLEVI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           E+  DRD+ MSA +A ++G+VD VL  R +
Sbjct: 179 ERDTDRDNFMSADQAVEYGLVDSVLNHRGE 208


>gi|323128768|gb|ADX16198.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
          Length = 246

 Score =  300 bits (769), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 129/208 (62%), Positives = 173/208 (83%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D+    + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 40  MSYSG--ERDNLAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIV 97

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 98  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 157

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+   + G++ E++
Sbjct: 158 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQI 217

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA EA ++G+VD +L  R
Sbjct: 218 ERDTERDRFLSAPEAVEYGLVDSILTHR 245


>gi|161504375|ref|YP_001571487.1| hypothetical protein SARI_02486 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865722|gb|ABX22345.1| hypothetical protein SARI_02486 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 243

 Score =  300 bits (769), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 129/208 (62%), Positives = 173/208 (83%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D+    + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 37  MSYSG--ERDNFAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIV 94

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 95  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 154

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+   + G++ E++
Sbjct: 155 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQI 214

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA EA ++G+VD +L  R
Sbjct: 215 ERDTERDRFLSAPEAVEYGLVDSILTHR 242


>gi|121727845|ref|ZP_01680912.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           cholerae V52]
 gi|229507982|ref|ZP_04397487.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae BX
           330286]
 gi|229511781|ref|ZP_04401260.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
           B33]
 gi|229515308|ref|ZP_04404768.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae TMA
           21]
 gi|229518918|ref|ZP_04408361.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
           RC9]
 gi|229523942|ref|ZP_04413347.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae bv.
           albensis VL426]
 gi|229529052|ref|ZP_04418442.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
           12129(1)]
 gi|229607528|ref|YP_002878176.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
           MJ-1236]
 gi|254849010|ref|ZP_05238360.1| ATP-dependent Clp protease [Vibrio cholerae MO10]
 gi|255745319|ref|ZP_05419268.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholera CIRS
           101]
 gi|262156043|ref|ZP_06029163.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
           INDRE 91/1]
 gi|262167884|ref|ZP_06035584.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
           RC27]
 gi|297579440|ref|ZP_06941368.1| ATP-dependent Clp protease [Vibrio cholerae RC385]
 gi|298498040|ref|ZP_07007847.1| clp protease [Vibrio cholerae MAK 757]
 gi|121629881|gb|EAX62295.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           cholerae V52]
 gi|229332826|gb|EEN98312.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
           12129(1)]
 gi|229337523|gb|EEO02540.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae bv.
           albensis VL426]
 gi|229343607|gb|EEO08582.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
           RC9]
 gi|229348013|gb|EEO12972.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae TMA
           21]
 gi|229351746|gb|EEO16687.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
           B33]
 gi|229355487|gb|EEO20408.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae BX
           330286]
 gi|229370183|gb|ACQ60606.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
           MJ-1236]
 gi|254844715|gb|EET23129.1| ATP-dependent Clp protease [Vibrio cholerae MO10]
 gi|255737149|gb|EET92545.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholera CIRS
           101]
 gi|262023611|gb|EEY42312.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
           RC27]
 gi|262030221|gb|EEY48865.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
           INDRE 91/1]
 gi|297537034|gb|EFH75867.1| ATP-dependent Clp protease [Vibrio cholerae RC385]
 gi|297542373|gb|EFH78423.1| clp protease [Vibrio cholerae MAK 757]
 gi|327484465|gb|AEA78872.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
           LMA3894-4]
          Length = 208

 Score =  300 bits (768), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 129/210 (61%), Positives = 165/210 (78%), Gaps = 2/210 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS++   K     +F  LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ 
Sbjct: 1   MSYQ--EKNAMSPIFDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE+ENP K+I LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLA 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
            G  G R+ LPN+R+++HQP GGF GQASDI+ HAQ+I+ IK +LN +  ++ G+  E +
Sbjct: 119 GGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKNKLNRLLAEHTGQPIEVI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           E+  DRD+ MSA +A ++G+VD VL  R +
Sbjct: 179 ERDTDRDNFMSADQAVEYGLVDAVLKHRGE 208


>gi|161615359|ref|YP_001589324.1| hypothetical protein SPAB_03130 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|197263975|ref|ZP_03164049.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|198242637|ref|YP_002214402.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|200390046|ref|ZP_03216657.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|205357179|ref|ZP_02345490.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205359635|ref|ZP_02830941.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|224582286|ref|YP_002636084.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|161364723|gb|ABX68491.1| hypothetical protein SPAB_03130 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|197242230|gb|EDY24850.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197937153|gb|ACH74486.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|199602491|gb|EDZ01037.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|205323485|gb|EDZ11324.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205344194|gb|EDZ30958.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|224466813|gb|ACN44643.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|322713521|gb|EFZ05092.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
 gi|326622151|gb|EGE28496.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
          Length = 243

 Score =  300 bits (768), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 129/208 (62%), Positives = 173/208 (83%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D+    + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 37  MSYSG--ERDNLAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIV 94

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 95  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 154

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+   + G++ E++
Sbjct: 155 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQI 214

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA EA ++G+VD +L  R
Sbjct: 215 ERDTERDRFLSAPEAVEYGLVDSILTHR 242


>gi|89073230|ref|ZP_01159760.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium sp.
           SKA34]
 gi|90579278|ref|ZP_01235088.1| ATP-dependent Clp protease proteolytic subunit [Vibrio angustum
           S14]
 gi|89050940|gb|EAR56404.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium sp.
           SKA34]
 gi|90440111|gb|EAS65292.1| ATP-dependent Clp protease proteolytic subunit [Vibrio angustum
           S14]
          Length = 207

 Score =  300 bits (768), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 131/208 (62%), Positives = 165/208 (79%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS++   K     +   LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ 
Sbjct: 1   MSYQ--EKNAMSPILDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE+ENP K+I LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLA 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
            G KG R+ LPN+R+++HQP GGF GQASDI+ HAQ+I+ IK+RLN +  ++ G+  E V
Sbjct: 119 GGAKGKRYCLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKQRLNGLLAEHTGQPLEVV 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  DRD+ MSA +A ++G+VD VL  R
Sbjct: 179 ERDTDRDNFMSAEQAVEYGLVDAVLSQR 206


>gi|296101559|ref|YP_003611705.1| ATP-dependent Clp protease, protease subunit [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295056018|gb|ADF60756.1| ATP-dependent Clp protease, protease subunit [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 207

 Score =  300 bits (768), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 130/208 (62%), Positives = 175/208 (84%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D+    + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--ERDNFAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+  ++ G++ E++
Sbjct: 119 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKARMNELMAQHTGQSLEQI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SASEA ++G+VD +L  R
Sbjct: 179 ERDTERDRFLSASEAVEYGLVDSILTHR 206


>gi|84387735|ref|ZP_00990751.1| ATP-dependent Clp protease proteolytic subunit [Vibrio splendidus
           12B01]
 gi|218710174|ref|YP_002417795.1| ATP-dependent Clp protease proteolytic subunit [Vibrio splendidus
           LGP32]
 gi|254763809|sp|B7VI00|CLPP_VIBSL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|84377418|gb|EAP94285.1| ATP-dependent Clp protease proteolytic subunit [Vibrio splendidus
           12B01]
 gi|218323193|emb|CAV19370.1| ATP-dependent Clp protease proteolytic subunit [Vibrio splendidus
           LGP32]
          Length = 208

 Score =  299 bits (767), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 130/208 (62%), Positives = 164/208 (78%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS++   K     +   LVPMVVEQT+RGERSYDIYSRLLKERI+F+TGQ+EDHMA L+ 
Sbjct: 1   MSYQ--EKNTMPSIMDALVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLVV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE+ENP K+I LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQLLFLESENPDKDIYLYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLA 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
            G  G R  LPN+R+++HQP GGF GQASDI+ HAQ+I+ IK++LN++  ++ G+  E V
Sbjct: 119 GGTPGKRHVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKQKLNKLLAEHTGQPLEVV 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  DRD+ MSA +A ++G+VD VL  R
Sbjct: 179 ERDTDRDNFMSADQAVEYGLVDSVLNHR 206


>gi|83311891|ref|YP_422155.1| protease subunit of ATP-dependent Clp protease [Magnetospirillum
           magneticum AMB-1]
 gi|82946732|dbj|BAE51596.1| Protease subunit of ATP-dependent Clp protease [Magnetospirillum
           magneticum AMB-1]
          Length = 244

 Score =  299 bits (767), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 130/213 (61%), Positives = 177/213 (83%), Gaps = 1/213 (0%)

Query: 4   EGCAKKDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQ 62
               ++D  D+++  LVPMVVEQTNRGERSYDIYSRLLKERI+F+TGQ+ D +A+LICAQ
Sbjct: 30  RNMRERDPIDLYMNTLVPMVVEQTNRGERSYDIYSRLLKERIIFLTGQVYDEVASLICAQ 89

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           LLFLE+ENP K+I+ YINSPGGVVT+G+AIYDTMQ+I+P +ST C+GQAASMGSLL++AG
Sbjct: 90  LLFLESENPSKDIAFYINSPGGVVTSGLAIYDTMQYIRPKVSTVCIGQAASMGSLLMTAG 149

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
           EKG RF+LPN+RI++HQPSGG  GQA+DIE  A++I+ ++ RLN IYV++ G+  + +EK
Sbjct: 150 EKGKRFSLPNSRIMVHQPSGGAQGQATDIEIQAREILALRARLNNIYVEHTGQPLDVIEK 209

Query: 183 TLDRDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
            ++RD  M+A EA ++G++D+V+  R  +E+ S
Sbjct: 210 VMERDKFMTADEAKEFGLIDEVVNKRPAVEDDS 242


>gi|326626794|gb|EGE33137.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 246

 Score =  299 bits (766), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 129/208 (62%), Positives = 172/208 (82%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  + D+    + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 40  MSYSG--ELDNLAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIV 97

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 98  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 157

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+   + G++ E++
Sbjct: 158 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQI 217

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA EA ++G+VD +L  R
Sbjct: 218 ERDTERDRFLSAPEAVEYGLVDSILTHR 245


>gi|283784263|ref|YP_003364128.1| ATP-dependent clp protease proteolytic subunit [Citrobacter
           rodentium ICC168]
 gi|282947717|emb|CBG87272.1| ATP-dependent clp protease proteolytic subunit [Citrobacter
           rodentium ICC168]
          Length = 207

 Score =  299 bits (766), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 129/208 (62%), Positives = 173/208 (83%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D+    + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--ERDNFAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+   + G++ E++
Sbjct: 119 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA EA ++G+VD +L  R
Sbjct: 179 ERDTERDRFLSAPEAVEYGLVDSILTHR 206


>gi|206578475|ref|YP_002240083.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Klebsiella
           pneumoniae 342]
 gi|238893386|ref|YP_002918120.1| ATP-dependent Clp protease proteolytic subunit [Klebsiella
           pneumoniae NTUH-K2044]
 gi|288936834|ref|YP_003440893.1| ATP-dependent Clp protease proteolytic subunit ClpP [Klebsiella
           variicola At-22]
 gi|290510110|ref|ZP_06549480.1| Clp protease [Klebsiella sp. 1_1_55]
 gi|206567533|gb|ACI09309.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Klebsiella
           pneumoniae 342]
 gi|238545702|dbj|BAH62053.1| ATP-dependent Clp protease proteolytic subunit [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|288891543|gb|ADC59861.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Klebsiella
           variicola At-22]
 gi|289776826|gb|EFD84824.1| Clp protease [Klebsiella sp. 1_1_55]
          Length = 207

 Score =  299 bits (766), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 129/208 (62%), Positives = 174/208 (83%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D+    + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--ERDNFAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+   + G++ E++
Sbjct: 119 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA+EA ++G+VD +L  R
Sbjct: 179 ERDTERDRFLSAAEAVEYGLVDSILTHR 206


>gi|194471774|ref|ZP_03077758.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|197249758|ref|YP_002145429.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|205357584|ref|ZP_02571531.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205358475|ref|ZP_02656494.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|205358901|ref|ZP_02665206.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|289827300|ref|ZP_06545983.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
 gi|194458138|gb|EDX46977.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|197213461|gb|ACH50858.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|205331008|gb|EDZ17772.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205334088|gb|EDZ20852.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|205340153|gb|EDZ26917.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|321226026|gb|EFX51077.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
          Length = 243

 Score =  299 bits (766), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 129/208 (62%), Positives = 173/208 (83%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D+    + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 37  MSYSG--ERDNLAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIV 94

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 95  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 154

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+   + G++ E++
Sbjct: 155 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQI 214

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA EA ++G+VD +L  R
Sbjct: 215 ERDTERDRFLSAPEAVEYGLVDSILTHR 242


>gi|56414396|ref|YP_151471.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197363316|ref|YP_002142953.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|67460194|sp|Q5PFN4|CLPP_SALPA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp; Flags: Precursor
 gi|226706471|sp|B5BD83|CLPP_SALPK RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|56128653|gb|AAV78159.1| ATP-dependent clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197094793|emb|CAR60326.1| ATP-dependent clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
          Length = 207

 Score =  299 bits (766), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 128/208 (61%), Positives = 173/208 (83%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D+    + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--ERDNLAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAG++IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIYLYINSPGGVITAGISIYDTMQFIKPDVSTICMGQAASMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+   + G++ E++
Sbjct: 119 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA EA ++G+VD +L  R
Sbjct: 179 ERDTERDRFLSAPEAVEYGLVDSILTHR 206


>gi|16759428|ref|NP_455045.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|16763829|ref|NP_459444.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|29142800|ref|NP_806142.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|162139608|ref|YP_215477.2| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|168237562|ref|ZP_02662620.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|168261116|ref|ZP_02683089.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168465541|ref|ZP_02699423.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|194443946|ref|YP_002039691.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194451357|ref|YP_002044483.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194734455|ref|YP_002113479.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|204930575|ref|ZP_03221505.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|207855928|ref|YP_002242579.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|213025962|ref|ZP_03340409.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
 gi|213419494|ref|ZP_03352560.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
 gi|213425858|ref|ZP_03358608.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Typhi str. E02-1180]
 gi|213646005|ref|ZP_03376058.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Typhi str. J185]
 gi|213853068|ref|ZP_03382600.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Typhi str. M223]
 gi|238911421|ref|ZP_04655258.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|60391923|sp|P0A1D7|CLPP_SALTY RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp; Flags: Precursor
 gi|60391924|sp|P0A1D8|CLPP_SALTI RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp; Flags: Precursor
 gi|67460140|sp|Q57SB5|CLPP_SALCH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp; Flags: Precursor
 gi|226706468|sp|B5QTJ6|CLPP_SALEP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706469|sp|B4T9E3|CLPP_SALHS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706470|sp|B4SWU1|CLPP_SALNS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706472|sp|B4TMC6|CLPP_SALSV RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|25289858|pir||AC0558 ATP-dependent clp protease proteolytic chain [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|7594816|dbj|BAA94668.1| serine protease subunit [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|16418955|gb|AAL19403.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|16501719|emb|CAD08907.1| ATP-dependent clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29138432|gb|AAO70002.1| ATP-dependent clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|194402609|gb|ACF62831.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194409661|gb|ACF69880.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194709957|gb|ACF89178.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|195631923|gb|EDX50443.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|197289522|gb|EDY28885.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|204320509|gb|EDZ05712.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205350070|gb|EDZ36701.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|206707731|emb|CAR32016.1| ATP-dependent clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|261245731|emb|CBG23528.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267992163|gb|ACY87048.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301157059|emb|CBW16543.1| ATP-dependent clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312911481|dbj|BAJ35455.1| ATP-dependent Clp protease proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           T000240]
 gi|320084722|emb|CBY94513.1| ATP-dependent clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|322614726|gb|EFY11655.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322618832|gb|EFY15720.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322623539|gb|EFY20378.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322629162|gb|EFY25941.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322631883|gb|EFY28637.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322637380|gb|EFY34082.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322642065|gb|EFY38675.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
 gi|322647884|gb|EFY44359.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322652562|gb|EFY48916.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322653276|gb|EFY49609.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322660575|gb|EFY56811.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322664727|gb|EFY60920.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322669220|gb|EFY65370.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322670765|gb|EFY66898.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322678996|gb|EFY75051.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322682025|gb|EFY78050.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322685146|gb|EFY81143.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|323192960|gb|EFZ78183.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323196958|gb|EFZ82100.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323203943|gb|EFZ88960.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323206972|gb|EFZ91925.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323214175|gb|EFZ98933.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323214501|gb|EFZ99252.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323223058|gb|EGA07401.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323227007|gb|EGA11188.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323230175|gb|EGA14295.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323233913|gb|EGA18002.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323238393|gb|EGA22451.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323244080|gb|EGA28089.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323246241|gb|EGA30224.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323251867|gb|EGA35730.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323257864|gb|EGA41543.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323261123|gb|EGA44715.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323264947|gb|EGA48446.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323272510|gb|EGA55917.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
          Length = 207

 Score =  299 bits (766), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 129/208 (62%), Positives = 173/208 (83%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D+    + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--ERDNLAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+   + G++ E++
Sbjct: 119 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA EA ++G+VD +L  R
Sbjct: 179 ERDTERDRFLSAPEAVEYGLVDSILTHR 206


>gi|261822507|ref|YP_003260613.1| ATP-dependent Clp protease proteolytic subunit [Pectobacterium
           wasabiae WPP163]
 gi|261606520|gb|ACX89006.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Pectobacterium wasabiae WPP163]
          Length = 207

 Score =  299 bits (766), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 130/208 (62%), Positives = 170/208 (81%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++  +   + LVPMVVEQT+RGERSYDIYSRLLKERI+F+TGQ+EDHMA L+ 
Sbjct: 1   MSYSGEQER--QAPHMALVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLVV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG R  LPN+R+++HQP GGF GQA+DIE HA++I+K+K ++NE+  K+ G+  E +
Sbjct: 119 AGAKGKRICLPNSRVMIHQPLGGFQGQATDIEIHAKEILKVKAKMNELMAKHTGQPLEAI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SASEA ++G+VD V  +R
Sbjct: 179 ERDTERDRFLSASEAVEYGLVDSVFTNR 206


>gi|74317695|ref|YP_315435.1| ATP-dependent Clp protease proteolytic subunit ClpP [Thiobacillus
           denitrificans ATCC 25259]
 gi|90183186|sp|Q3SI98|CLPP_THIDA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|74057190|gb|AAZ97630.1| peptidase S14, ClpP [Thiobacillus denitrificans ATCC 25259]
          Length = 212

 Score =  299 bits (766), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 123/203 (60%), Positives = 161/203 (79%)

Query: 8   KKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           +   E   LGLVPMVVEQ+ RGER+YDIYSRLLKER++F+ G + D  A LI AQ+LFLE
Sbjct: 7   RTAPEPQGLGLVPMVVEQSGRGERAYDIYSRLLKERVIFLVGPVNDATANLIVAQMLFLE 66

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           +ENP K+I LYINSPGG V+AG+AIYDTMQFIKP +ST C+GQAASMG+ LL+AG KG R
Sbjct: 67  SENPDKDIYLYINSPGGSVSAGLAIYDTMQFIKPDVSTLCIGQAASMGAFLLTAGAKGKR 126

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           + LPN+R+++HQP GGF GQASDIE HA++I+ +K RLN +  K+ G++ E +++  DRD
Sbjct: 127 YCLPNSRVMIHQPLGGFQGQASDIEIHAKEILYLKARLNGMLAKHTGQSLEVIDRDTDRD 186

Query: 188 HIMSASEACDWGVVDKVLMSRID 210
           + MSA ++  +G+VDKVL SR +
Sbjct: 187 NFMSAEDSVKYGLVDKVLTSRNE 209


>gi|91775762|ref|YP_545518.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Methylobacillus flagellatus KT]
 gi|116243149|sp|Q1H1G0|CLPP_METFK RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|91709749|gb|ABE49677.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Methylobacillus flagellatus KT]
          Length = 213

 Score =  299 bits (766), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 122/210 (58%), Positives = 159/210 (75%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           + +   A+   E   LG +PMV+EQ+ RGERSYDIYSRLLKERI+F+ G + D  A L+ 
Sbjct: 2   IHYPATAQSQFEAQGLGYIPMVIEQSGRGERSYDIYSRLLKERIIFLVGPVNDATANLVV 61

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLEAENP K+I  YINSPGG VTAGM IYDTMQF+KP +ST C+GQAASMG+LLL+
Sbjct: 62  AQLLFLEAENPDKDIYFYINSPGGSVTAGMGIYDTMQFVKPDVSTLCVGQAASMGALLLA 121

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG +G RF LPN+R+++HQP GGF GQASDIE HA++I+ ++ +LN I   + G+  E++
Sbjct: 122 AGAQGKRFCLPNSRVMIHQPLGGFQGQASDIEIHAKEILFLREKLNHILASHTGQPVEKI 181

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRID 210
               DRD+ MSA ++  +G+VDKV+ SR D
Sbjct: 182 ALDTDRDNFMSAEQSVAYGIVDKVIASRAD 211


>gi|15641924|ref|NP_231556.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|147674197|ref|YP_001217455.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
           O395]
 gi|153824129|ref|ZP_01976796.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           cholerae B33]
 gi|153826398|ref|ZP_01979065.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           cholerae MZO-2]
 gi|227082052|ref|YP_002810603.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           cholerae M66-2]
 gi|254286858|ref|ZP_04961810.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           cholerae AM-19226]
 gi|18203199|sp|Q9KQS6|CLPP_VIBCH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|172047646|sp|A5F6X0|CLPP_VIBC3 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|254763808|sp|C3LNM6|CLPP_VIBCM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|9656458|gb|AAF95070.1| ATP-dependent Clp protease, proteolytic subunit [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|126518348|gb|EAZ75571.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           cholerae B33]
 gi|146316080|gb|ABQ20619.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           cholerae O395]
 gi|149739876|gb|EDM54067.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           cholerae MZO-2]
 gi|150423008|gb|EDN14957.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           cholerae AM-19226]
 gi|227009940|gb|ACP06152.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           cholerae M66-2]
 gi|227013820|gb|ACP10030.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           cholerae O395]
          Length = 200

 Score =  299 bits (765), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 126/199 (63%), Positives = 160/199 (80%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
             +F  LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ AQLLFLE+ENP
Sbjct: 2   SPIFDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENP 61

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+I LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+ G  G R+ LP
Sbjct: 62  DKDIFLYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLP 121

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+R+++HQP GGF GQASDI+ HAQ+I+ IK +LN +  ++ G+  E +E+  DRD+ MS
Sbjct: 122 NSRVMIHQPLGGFQGQASDIQIHAQEILTIKNKLNRLLAEHTGQPIEVIERDTDRDNFMS 181

Query: 192 ASEACDWGVVDKVLMSRID 210
           A +A ++G+VD VL  R +
Sbjct: 182 ADQAVEYGLVDAVLKHRGE 200


>gi|27363512|ref|NP_759040.1| ATP-dependent Clp protease proteolytic subunit [Vibrio vulnificus
           CMCP6]
 gi|37679288|ref|NP_933897.1| ATP-dependent Clp protease proteolytic subunit [Vibrio vulnificus
           YJ016]
 gi|320156969|ref|YP_004189348.1| ATP-dependent Clp protease proteolytic subunit [Vibrio vulnificus
           MO6-24/O]
 gi|27359628|gb|AAO08567.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           vulnificus CMCP6]
 gi|37198031|dbj|BAC93868.1| ATP-dependent Clp protease, proteolytic subunit [Vibrio vulnificus
           YJ016]
 gi|319932281|gb|ADV87145.1| ATP-dependent Clp protease proteolytic subunit [Vibrio vulnificus
           MO6-24/O]
          Length = 208

 Score =  299 bits (765), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 128/208 (61%), Positives = 164/208 (78%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS++   K     +   LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ 
Sbjct: 1   MSYQ--EKNAMSPIIDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE+ENP K+I LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLA 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
            G  G R+ LPN+R+++HQP GGF GQASDI+ HAQ+I+ IK +LN++  ++ G+  E +
Sbjct: 119 GGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKTKLNKLLAEHTGQPLEVI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  DRD+ MSA +A ++G+VD VL  R
Sbjct: 179 ERDTDRDNFMSADQAVEYGLVDAVLTHR 206


>gi|291085757|ref|ZP_06571180.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Citrobacter
           youngae ATCC 29220]
 gi|291069764|gb|EFE07873.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Citrobacter
           youngae ATCC 29220]
          Length = 243

 Score =  298 bits (764), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 130/208 (62%), Positives = 174/208 (83%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D+    + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 37  MSYSG--ERDNFAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFMTGQVEDHMANLIV 94

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 95  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 154

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+   + G++ E++
Sbjct: 155 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQI 214

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SASEA ++G+VD +L  R
Sbjct: 215 ERDTERDRFLSASEAVEYGLVDSILTHR 242


>gi|317047175|ref|YP_004114823.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pantoea sp.
           At-9b]
 gi|316948792|gb|ADU68267.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pantoea sp.
           At-9b]
          Length = 207

 Score =  298 bits (764), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 130/208 (62%), Positives = 173/208 (83%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G   ++     + LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--DREFTAPHMALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTM+FIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMKFIKPDVSTICMGQACSMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K+R+NE+  ++ GK+ E++
Sbjct: 119 AGTKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKQRMNELMAEHTGKSLEQI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SASEA ++G+VD +L  R
Sbjct: 179 ERDTERDRFLSASEAVEYGLVDSILTHR 206


>gi|227113465|ref|ZP_03827121.1| ATP-dependent Clp protease proteolytic subunit [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
 gi|253687443|ref|YP_003016633.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251754021|gb|ACT12097.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 207

 Score =  298 bits (764), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 131/208 (62%), Positives = 170/208 (81%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++  +   + LVPMVVEQT+RGERSYDIYSRLLKERI+F+TGQ+EDHMA L+ 
Sbjct: 1   MSYSGEQER--QAPHMALVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLVV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG R  LPN+R+++HQP GGF GQA+DIE HA++I+K+K ++NE+  K+ G+  E +
Sbjct: 119 AGAKGKRICLPNSRVMIHQPLGGFQGQATDIEIHAKEILKVKAKMNELMAKHTGQPLEAI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SASEA D+G+VD V  +R
Sbjct: 179 ERDTERDRFLSASEAVDYGLVDSVFTNR 206


>gi|153835695|ref|ZP_01988362.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           harveyi HY01]
 gi|156973712|ref|YP_001444619.1| ATP-dependent Clp protease proteolytic subunit [Vibrio harveyi ATCC
           BAA-1116]
 gi|269961045|ref|ZP_06175414.1| ATP-dependent Clp protease proteolytic subunit [Vibrio harveyi
           1DA3]
 gi|226706635|sp|A7MV87|CLPP_VIBHB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|148867676|gb|EDL66952.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           harveyi HY01]
 gi|156525306|gb|ABU70392.1| hypothetical protein VIBHAR_01417 [Vibrio harveyi ATCC BAA-1116]
 gi|269834264|gb|EEZ88354.1| ATP-dependent Clp protease proteolytic subunit [Vibrio harveyi
           1DA3]
          Length = 208

 Score =  298 bits (764), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 128/210 (60%), Positives = 165/210 (78%), Gaps = 2/210 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS++   K     +   LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ 
Sbjct: 1   MSYQ--EKNAMSPIIDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE+ENP K+I LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLA 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
            G  G R+ LPN+R+++HQP GGF GQASDI+ HAQ+I+ IK++LN +  ++ G+  E +
Sbjct: 119 GGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKQKLNNLLAEHTGQPLEVI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           E+  DRD+ MSA +A ++G+VD VL  R +
Sbjct: 179 ERDTDRDNFMSADQAVEYGIVDAVLSHRGE 208


>gi|86148885|ref|ZP_01067136.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. MED222]
 gi|85833328|gb|EAQ51535.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. MED222]
          Length = 198

 Score =  298 bits (764), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 127/196 (64%), Positives = 159/196 (81%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
            +   LVPMVVEQT+RGERSYDIYSRLLKERI+F+TGQ+EDHMA L+ AQLLFLE+ENP 
Sbjct: 1   SIMDALVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLVVAQLLFLESENPD 60

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K+I LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+ G  G R  LPN
Sbjct: 61  KDIYLYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGTPGKRHVLPN 120

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           +R+++HQP GGF GQASDI+ HAQ+I+ IK++LN++  ++ G+  E VE+  DRD+ MSA
Sbjct: 121 SRVMIHQPLGGFQGQASDIQIHAQEILTIKQKLNKLLAEHTGQPLEVVERDTDRDNFMSA 180

Query: 193 SEACDWGVVDKVLMSR 208
            +A ++G+VD VL  R
Sbjct: 181 DQAVEYGLVDSVLNHR 196


>gi|146310565|ref|YP_001175639.1| ATP-dependent Clp protease proteolytic subunit [Enterobacter sp.
           638]
 gi|145317441|gb|ABP59588.1| ATP-dependent Clp protease proteolytic subunit ClpP [Enterobacter
           sp. 638]
          Length = 207

 Score =  298 bits (764), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 130/208 (62%), Positives = 174/208 (83%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D+    + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 1   MSYNG--ERDNIAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+   + G++ E++
Sbjct: 119 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SASEA ++G+VD +L  R
Sbjct: 179 ERDTERDRFLSASEAVEYGLVDSILTHR 206


>gi|15800167|ref|NP_286179.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O157:H7 EDL933]
 gi|15829745|ref|NP_308518.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O157:H7 str. Sakai]
 gi|16128422|ref|NP_414971.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli str. K-12 substr. MG1655]
 gi|26246448|ref|NP_752487.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           CFT073]
 gi|30061939|ref|NP_836110.1| ATP-dependent Clp protease proteolytic subunit [Shigella flexneri
           2a str. 2457T]
 gi|56479658|ref|NP_706331.2| ATP-dependent Clp protease proteolytic subunit [Shigella flexneri
           2a str. 301]
 gi|74311012|ref|YP_309431.1| ATP-dependent Clp protease proteolytic subunit [Shigella sonnei
           Ss046]
 gi|82542925|ref|YP_406872.1| ATP-dependent Clp protease proteolytic subunit [Shigella boydii
           Sb227]
 gi|82775656|ref|YP_402003.1| ATP-dependent Clp protease proteolytic subunit [Shigella
           dysenteriae Sd197]
 gi|89107307|ref|AP_001087.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli str. K-12 substr. W3110]
 gi|91209511|ref|YP_539497.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           UTI89]
 gi|110640698|ref|YP_668426.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           536]
 gi|110804465|ref|YP_687985.1| ATP-dependent Clp protease proteolytic subunit [Shigella flexneri 5
           str. 8401]
 gi|117622697|ref|YP_851610.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           APEC O1]
 gi|157158299|ref|YP_001461624.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           E24377A]
 gi|157159964|ref|YP_001457282.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           HS]
 gi|168754541|ref|ZP_02779548.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. EC4401]
 gi|168768391|ref|ZP_02793398.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. EC4486]
 gi|168778128|ref|ZP_02803135.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. EC4196]
 gi|168778929|ref|ZP_02803936.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. EC4076]
 gi|168786287|ref|ZP_02811294.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. EC869]
 gi|170021190|ref|YP_001726144.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           ATCC 8739]
 gi|170080023|ref|YP_001729343.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli str. K-12 substr. DH10B]
 gi|170683276|ref|YP_001742581.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           SMS-3-5]
 gi|187731303|ref|YP_001879148.1| ATP-dependent Clp protease proteolytic subunit [Shigella boydii CDC
           3083-94]
 gi|188492597|ref|ZP_02999867.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli 53638]
 gi|191174674|ref|ZP_03036146.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli F11]
 gi|193064129|ref|ZP_03045213.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli E22]
 gi|195938496|ref|ZP_03083878.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O157:H7 str. EC4024]
 gi|208809540|ref|ZP_03251877.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. EC4206]
 gi|208815859|ref|ZP_03257038.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. EC4045]
 gi|208822964|ref|ZP_03263282.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. EC4042]
 gi|209917654|ref|YP_002291738.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           SE11]
 gi|215485518|ref|YP_002327949.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O127:H6 str. E2348/69]
 gi|217326412|ref|ZP_03442496.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. TW14588]
 gi|218549895|ref|YP_002383686.1| ATP-dependent Clp protease proteolytic subunit [Escherichia
           fergusonii ATCC 35469]
 gi|218553004|ref|YP_002385917.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           IAI1]
 gi|218557347|ref|YP_002390260.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           S88]
 gi|218688301|ref|YP_002396513.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           ED1a]
 gi|218693900|ref|YP_002401567.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           55989]
 gi|218698651|ref|YP_002406280.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           IAI39]
 gi|218703721|ref|YP_002411240.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           UMN026]
 gi|227884552|ref|ZP_04002357.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           83972]
 gi|238899725|ref|YP_002925521.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli BW2952]
 gi|253774574|ref|YP_003037405.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160506|ref|YP_003043614.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli B
           str. REL606]
 gi|254791621|ref|YP_003076458.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O157:H7 str. TW14359]
 gi|256020408|ref|ZP_05434273.1| ATP-dependent Clp protease proteolytic subunit [Shigella sp. D9]
 gi|256023945|ref|ZP_05437810.1| ATP-dependent Clp protease proteolytic subunit [Escherichia sp.
           4_1_40B]
 gi|260842638|ref|YP_003220416.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O103:H2 str. 12009]
 gi|260853660|ref|YP_003227551.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O26:H11 str. 11368]
 gi|260866598|ref|YP_003233000.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O111:H- str. 11128]
 gi|261223919|ref|ZP_05938200.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256367|ref|ZP_05948900.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291281344|ref|YP_003498162.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O55:H7 str. CB9615]
 gi|293403558|ref|ZP_06647649.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           FVEC1412]
 gi|293408587|ref|ZP_06652426.1| Clp protease [Escherichia coli B354]
 gi|297516115|ref|ZP_06934501.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           OP50]
 gi|298379170|ref|ZP_06989051.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           FVEC1302]
 gi|300818231|ref|ZP_07098442.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 107-1]
 gi|300820317|ref|ZP_07100469.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 119-7]
 gi|300903295|ref|ZP_07121223.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 84-1]
 gi|300918180|ref|ZP_07134787.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 115-1]
 gi|300930260|ref|ZP_07145673.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 187-1]
 gi|300947910|ref|ZP_07162058.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 116-1]
 gi|301025667|ref|ZP_07189185.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 196-1]
 gi|301330696|ref|ZP_07223298.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 78-1]
 gi|306813096|ref|ZP_07447289.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           NC101]
 gi|307137081|ref|ZP_07496437.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           H736]
 gi|307312185|ref|ZP_07591821.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli W]
 gi|309794830|ref|ZP_07689251.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 145-7]
 gi|331640957|ref|ZP_08342092.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli H736]
 gi|331645613|ref|ZP_08346717.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli M605]
 gi|331651375|ref|ZP_08352400.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli M718]
 gi|331656494|ref|ZP_08357456.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli TA206]
 gi|331661818|ref|ZP_08362741.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli TA143]
 gi|331666792|ref|ZP_08367666.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli TA271]
 gi|331671984|ref|ZP_08372780.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli TA280]
 gi|331676109|ref|ZP_08376821.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli H591]
 gi|331681832|ref|ZP_08382465.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli H299]
 gi|62288033|sp|P0A6G7|CLPP_ECOLI RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Caseinolytic protease; AltName:
           Full=Endopeptidase Clp; AltName: Full=Heat shock protein
           F21.5; AltName: Full=Protease Ti; Flags: Precursor
 gi|62288034|sp|P0A6G8|CLPP_ECOL6 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp; Flags: Precursor
 gi|62288035|sp|P0A6G9|CLPP_ECO57 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp; Flags: Precursor
 gi|62288036|sp|P0A6H0|CLPP_SHIFL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|90183183|sp|Q325G4|CLPP_SHIBS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|90183184|sp|Q32JJ3|CLPP_SHIDS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|110816465|sp|Q3Z4W6|CLPP_SHISS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|116243134|sp|Q0TKK4|CLPP_ECOL5 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp; Flags: Precursor
 gi|116243136|sp|Q1RF98|CLPP_ECOUT RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp; Flags: Precursor
 gi|122957620|sp|Q0T7E6|CLPP_SHIF8 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166201821|sp|A1A8A6|CLPP_ECOK1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|167008648|sp|A7ZIJ5|CLPP_ECO24 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|167008649|sp|A7ZX95|CLPP_ECOHS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|189082457|sp|B1J011|CLPP_ECOLC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|310942734|pdb|3MT6|R Chain R, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942735|pdb|3MT6|S Chain S, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942736|pdb|3MT6|T Chain T, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942737|pdb|3MT6|U Chain U, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942738|pdb|3MT6|O Chain O, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942739|pdb|3MT6|P Chain P, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942740|pdb|3MT6|Q Chain Q, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942741|pdb|3MT6|Y Chain Y, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942742|pdb|3MT6|Z Chain Z, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942743|pdb|3MT6|AA Chain a, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942744|pdb|3MT6|BB Chain b, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942745|pdb|3MT6|V Chain V, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942746|pdb|3MT6|W Chain W, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942747|pdb|3MT6|X Chain X, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942748|pdb|3MT6|M Chain M, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942749|pdb|3MT6|L Chain L, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942750|pdb|3MT6|K Chain K, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942751|pdb|3MT6|J Chain J, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942752|pdb|3MT6|I Chain I, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942753|pdb|3MT6|H Chain H, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942754|pdb|3MT6|N Chain N, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942755|pdb|3MT6|F Chain F, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942756|pdb|3MT6|E Chain E, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942757|pdb|3MT6|D Chain D, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942758|pdb|3MT6|C Chain C, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942759|pdb|3MT6|B Chain B, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942760|pdb|3MT6|A Chain A, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|310942761|pdb|3MT6|G Chain G, Structure Of Clpp From Escherichia Coli In Complex With
           Adep1
 gi|12513299|gb|AAG54787.1|AE005223_2 ATP-dependent proteolytic subunit of clpA-clpP serine protease,
           heat shock protein F21.5 [Escherichia coli O157:H7 str.
           EDL933]
 gi|26106846|gb|AAN79031.1|AE016756_214 ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           CFT073]
 gi|145556|gb|AAA23588.1| ATP-dependent protease (clpP) [Escherichia coli]
 gi|1773121|gb|AAB40193.1| ATP-dependent Clp proteinase [Escherichia coli]
 gi|1786641|gb|AAC73540.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli str. K-12 substr. MG1655]
 gi|13359948|dbj|BAB33914.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease ClpP
           [Escherichia coli O157:H7 str. Sakai]
 gi|30040183|gb|AAP15916.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease,
           heat shock protein F21.5 [Shigella flexneri 2a str.
           2457T]
 gi|56383209|gb|AAN42038.2| ATP-dependent proteolytic subunit of clpA-clpP serine protease,
           heat shock protein F21.5 [Shigella flexneri 2a str. 301]
 gi|73854489|gb|AAZ87196.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease
           [Shigella sonnei Ss046]
 gi|81239804|gb|ABB60514.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease
           [Shigella dysenteriae Sd197]
 gi|81244336|gb|ABB65044.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease
           [Shigella boydii Sb227]
 gi|85674577|dbj|BAE76217.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli str. K12 substr. W3110]
 gi|91071085|gb|ABE05966.1| ATP-dependent proteolytic subunit of clpA-ClpP serine protease,
           heat shock protein F21.5 [Escherichia coli UTI89]
 gi|110342290|gb|ABG68527.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           536]
 gi|110614013|gb|ABF02680.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease
           [Shigella flexneri 5 str. 8401]
 gi|115511821|gb|ABI99895.1| ATP-dependent proteolytic subunit of ClpA-ClpP serine protease
           [Escherichia coli APEC O1]
 gi|157065644|gb|ABV04899.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli HS]
 gi|157080329|gb|ABV20037.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli E24377A]
 gi|169756118|gb|ACA78817.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli ATCC 8739]
 gi|169887858|gb|ACB01565.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli str. K-12 substr. DH10B]
 gi|170520994|gb|ACB19172.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli SMS-3-5]
 gi|187428295|gb|ACD07569.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shigella
           boydii CDC 3083-94]
 gi|187766815|gb|EDU30659.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. EC4196]
 gi|188487796|gb|EDU62899.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli 53638]
 gi|189003087|gb|EDU72073.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. EC4076]
 gi|189358046|gb|EDU76465.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. EC4401]
 gi|189362475|gb|EDU80894.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. EC4486]
 gi|189373600|gb|EDU92016.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. EC869]
 gi|190905047|gb|EDV64714.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli F11]
 gi|192929158|gb|EDV82768.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli E22]
 gi|208729341|gb|EDZ78942.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. EC4206]
 gi|208732507|gb|EDZ81195.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. EC4045]
 gi|208737157|gb|EDZ84841.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. EC4042]
 gi|209743854|gb|ACI70234.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease ClpP
           [Escherichia coli]
 gi|209743856|gb|ACI70235.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease ClpP
           [Escherichia coli]
 gi|209743858|gb|ACI70236.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease ClpP
           [Escherichia coli]
 gi|209743860|gb|ACI70237.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease ClpP
           [Escherichia coli]
 gi|209743862|gb|ACI70238.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease ClpP
           [Escherichia coli]
 gi|209910913|dbj|BAG75987.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           SE11]
 gi|215263590|emb|CAS07920.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli O127:H6 str. E2348/69]
 gi|217322633|gb|EEC31057.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli O157:H7 str. TW14588]
 gi|218350632|emb|CAU96324.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli 55989]
 gi|218357436|emb|CAQ90075.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia fergusonii ATCC 35469]
 gi|218359772|emb|CAQ97313.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli IAI1]
 gi|218364116|emb|CAR01781.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli S88]
 gi|218368637|emb|CAR16376.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli IAI39]
 gi|218425865|emb|CAR06671.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli ED1a]
 gi|218430818|emb|CAR11692.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli UMN026]
 gi|222032232|emb|CAP74971.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           LF82]
 gi|227838638|gb|EEJ49104.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           83972]
 gi|238863325|gb|ACR65323.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli BW2952]
 gi|242376218|emb|CAQ30909.1| clpP, subunit of ClpP serine protease, ClpAP, ClpXP and ClpAXP
           [Escherichia coli BL21(DE3)]
 gi|253325618|gb|ACT30220.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|253972407|gb|ACT38078.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli B
           str. REL606]
 gi|253976617|gb|ACT42287.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           BL21(DE3)]
 gi|254591021|gb|ACT70382.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli O157:H7 str. TW14359]
 gi|257752309|dbj|BAI23811.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O26:H11 str. 11368]
 gi|257757785|dbj|BAI29282.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O103:H2 str. 12009]
 gi|257762954|dbj|BAI34449.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O111:H- str. 11128]
 gi|260450376|gb|ACX40798.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli DH1]
 gi|281177608|dbj|BAI53938.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           SE15]
 gi|281599777|gb|ADA72761.1| ATP-dependent Clp protease proteolytic subunit [Shigella flexneri
           2002017]
 gi|284920247|emb|CBG33306.1| ATP-dependent clp protease proteolytic subunit [Escherichia coli
           042]
 gi|290761217|gb|ADD55178.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O55:H7 str. CB9615]
 gi|291429411|gb|EFF02431.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           FVEC1412]
 gi|291471765|gb|EFF14248.1| Clp protease [Escherichia coli B354]
 gi|294492533|gb|ADE91289.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli IHE3034]
 gi|298280283|gb|EFI21787.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           FVEC1302]
 gi|299880021|gb|EFI88232.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 196-1]
 gi|300404590|gb|EFJ88128.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 84-1]
 gi|300414631|gb|EFJ97941.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 115-1]
 gi|300452510|gb|EFK16130.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 116-1]
 gi|300461832|gb|EFK25325.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 187-1]
 gi|300527102|gb|EFK48171.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 119-7]
 gi|300529122|gb|EFK50184.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 107-1]
 gi|300843357|gb|EFK71117.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 78-1]
 gi|305853859|gb|EFM54298.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           NC101]
 gi|306907687|gb|EFN38189.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli W]
 gi|307552344|gb|ADN45119.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           ABU 83972]
 gi|307628093|gb|ADN72397.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           UM146]
 gi|308121483|gb|EFO58745.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 145-7]
 gi|309700698|emb|CBI99994.1| ATP-dependent clp protease proteolytic subunit [Escherichia coli
           ETEC H10407]
 gi|312945015|gb|ADR25842.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|315059717|gb|ADT74044.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Escherichia coli W]
 gi|315135119|dbj|BAJ42278.1| conserved hypothetical protein [Escherichia coli DH1]
 gi|320173743|gb|EFW48926.1| ATP-dependent Clp protease proteolytic subunit [Shigella
           dysenteriae CDC 74-1112]
 gi|320178281|gb|EFW53255.1| ATP-dependent Clp protease proteolytic subunit [Shigella boydii
           ATCC 9905]
 gi|320186067|gb|EFW60812.1| ATP-dependent Clp protease proteolytic subunit [Shigella flexneri
           CDC 796-83]
 gi|320192853|gb|EFW67493.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O157:H7 str. EC1212]
 gi|320197089|gb|EFW71708.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           WV_060327]
 gi|320201681|gb|EFW76257.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           EC4100B]
 gi|320638432|gb|EFX08146.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O157:H7 str. G5101]
 gi|320643812|gb|EFX12935.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O157:H- str. 493-89]
 gi|320649163|gb|EFX17741.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O157:H- str. H 2687]
 gi|320656056|gb|EFX23972.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320661206|gb|EFX28637.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320665182|gb|EFX32275.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323379718|gb|ADX51986.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli KO11]
 gi|323938623|gb|EGB34872.1| Clp protease [Escherichia coli E1520]
 gi|323943244|gb|EGB39400.1| Clp protease [Escherichia coli E482]
 gi|323945342|gb|EGB41398.1| Clp protease [Escherichia coli H120]
 gi|323952951|gb|EGB48819.1| Clp protease [Escherichia coli H252]
 gi|323958630|gb|EGB54333.1| Clp protease [Escherichia coli H263]
 gi|323963427|gb|EGB58989.1| Clp protease [Escherichia coli H489]
 gi|323965124|gb|EGB60583.1| Clp protease [Escherichia coli M863]
 gi|323972291|gb|EGB67501.1| Clp protease [Escherichia coli TA007]
 gi|323976078|gb|EGB71171.1| Clp protease [Escherichia coli TW10509]
 gi|324114664|gb|EGC08632.1| Clp protease [Escherichia fergusonii B253]
 gi|324116925|gb|EGC10838.1| Clp protease [Escherichia coli E1167]
 gi|326341201|gb|EGD64993.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O157:H7 str. 1044]
 gi|326346024|gb|EGD69763.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O157:H7 str. 1125]
 gi|330910231|gb|EGH38741.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           AA86]
 gi|331037755|gb|EGI09975.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli H736]
 gi|331045775|gb|EGI17901.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli M605]
 gi|331051116|gb|EGI23168.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli M718]
 gi|331054742|gb|EGI26751.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli TA206]
 gi|331060240|gb|EGI32204.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli TA143]
 gi|331066016|gb|EGI37900.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli TA271]
 gi|331070973|gb|EGI42332.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli TA280]
 gi|331076167|gb|EGI47449.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli H591]
 gi|331081034|gb|EGI52199.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli H299]
          Length = 207

 Score =  298 bits (764), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 129/208 (62%), Positives = 173/208 (83%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D+    + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--ERDNFAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+   + G++ E++
Sbjct: 119 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA EA ++G+VD +L  R
Sbjct: 179 ERDTERDRFLSAPEAVEYGLVDSILTHR 206


>gi|312796430|ref|YP_004029352.1| ATP-dependent endopeptidase clp proteolytic subunit clpP
           [Burkholderia rhizoxinica HKI 454]
 gi|312168205|emb|CBW75208.1| ATP-dependent endopeptidase clp proteolytic subunit clpP (EC
           3.4.21.92) [Burkholderia rhizoxinica HKI 454]
          Length = 238

 Score =  298 bits (763), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 125/217 (57%), Positives = 162/217 (74%), Gaps = 8/217 (3%)

Query: 1   MSFEG--------CAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIE 52
           M+F           A +D E   LGLVPMVVE + RGER+YDIYSRLLKER+VF+ G++ 
Sbjct: 22  MTFRADLLNQLATHAPRDFEAQALGLVPMVVETSGRGERAYDIYSRLLKERLVFLVGEVN 81

Query: 53  DHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAA 112
           D  A L+ AQLLFLE+ENP K+ISLYINSPGG V+AGMAIYDTMQFIKP ++T CMG AA
Sbjct: 82  DQAANLVVAQLLFLESENPDKDISLYINSPGGSVSAGMAIYDTMQFIKPDVTTLCMGLAA 141

Query: 113 SMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKN 172
           SMG+ LL+AG KG R ALPNAR+++HQP GG  GQASDIE  A++I+ +K RLN +  ++
Sbjct: 142 SMGAFLLAAGAKGKRIALPNARVMIHQPLGGARGQASDIEIQAREILFLKERLNNLLAQH 201

Query: 173 CGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
            G+  E++++  DRD+ MSA +A  +G++D+VL  R 
Sbjct: 202 TGQPVEQIQRDTDRDNFMSAEDAQAYGLIDQVLHKRP 238


>gi|54309798|ref|YP_130818.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium
           profundum SS9]
 gi|46914236|emb|CAG21016.1| putative gi|27363512|ref|NP_759040.1| ATP-dependent Clp protease,
           proteolytic subunit [Vibrio vulnificus CMCP6]
           [Photobacterium profundum SS9]
          Length = 207

 Score =  298 bits (763), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 130/208 (62%), Positives = 163/208 (78%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS++   +     +   LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ 
Sbjct: 1   MSYQ--ERNAMSPITDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE+ENP K+I LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLA 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
            G KG R+ LPN+R+++HQP GGF GQASDI+ HA++I+ IK RLN +  K+ G+  E V
Sbjct: 119 GGAKGKRYCLPNSRVMIHQPLGGFQGQASDIQIHAKEILTIKHRLNSLLAKHTGQPLEVV 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E   DRD+ MSA +A ++G+VD VL  R
Sbjct: 179 EGDTDRDNFMSADQAVEYGLVDSVLTQR 206


>gi|251790648|ref|YP_003005369.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dickeya zeae
           Ech1591]
 gi|247539269|gb|ACT07890.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dickeya zeae
           Ech1591]
          Length = 207

 Score =  298 bits (763), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 135/208 (64%), Positives = 172/208 (82%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  +K +    + LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 1   MSYSGEQEKLA--PHMALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GGF GQA+DIE HA++I+K+K R+NE+  K+ G+  E +
Sbjct: 119 AGTKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKEILKVKARMNELMAKHTGQPLEMI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA+EA D+G+VD VL  R
Sbjct: 179 ERDTERDRFLSAAEAVDYGLVDSVLTHR 206


>gi|254480762|ref|ZP_05094009.1| ATP-dependent Clp protease, proteolytic subunit ClpP [marine gamma
           proteobacterium HTCC2148]
 gi|214039345|gb|EEB80005.1| ATP-dependent Clp protease, proteolytic subunit ClpP [marine gamma
           proteobacterium HTCC2148]
          Length = 213

 Score =  298 bits (763), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 125/208 (60%), Positives = 162/208 (77%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           M ++   +       LGLVPMVVEQT+RGERSYDIYSRLLKER++FV GQ+EDHMA LI 
Sbjct: 1   MPYQPDGRNSQTIDNLGLVPMVVEQTSRGERSYDIYSRLLKERVIFVVGQVEDHMANLIV 60

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE+ENP K+I LYINSPGG VTAG++IYDTMQFIKP +ST C+GQAASMG+ LL 
Sbjct: 61  AQLLFLESENPDKDIHLYINSPGGSVTAGLSIYDTMQFIKPDVSTMCLGQAASMGAFLLC 120

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
            G KG R+ LPNAR ++HQPSGG  GQA+DIE  A++I+ I+ +LN++  ++ G+  E +
Sbjct: 121 GGAKGKRYCLPNARTMIHQPSGGAQGQATDIEIQAKEILIIREKLNQLMAEHTGQPLEVI 180

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  M+A E+  +G+VD+V+ SR
Sbjct: 181 ERDTERDRFMNAEESTAYGLVDEVVTSR 208


>gi|170767754|ref|ZP_02902207.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           albertii TW07627]
 gi|170123242|gb|EDS92173.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           albertii TW07627]
          Length = 207

 Score =  298 bits (763), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 129/208 (62%), Positives = 173/208 (83%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D+    + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--ERDNLAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+   + G++ E++
Sbjct: 119 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA EA ++G+VD +L  R
Sbjct: 179 ERDTERDRFLSAPEAVEYGLVDSILTHR 206


>gi|254507754|ref|ZP_05119885.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           parahaemolyticus 16]
 gi|219549279|gb|EED26273.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           parahaemolyticus 16]
          Length = 208

 Score =  298 bits (763), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 127/210 (60%), Positives = 166/210 (79%), Gaps = 2/210 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS++   K     +   LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ 
Sbjct: 1   MSYQ--EKNAMSPILDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE+ENP K+I LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLA 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
            G  G R+ LPN+R+++HQP GGF GQASDI+ HAQ+I+ IK++LN++  ++ G+  E +
Sbjct: 119 GGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKQKLNKLLAEHTGQPLEVI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           E+  DRD+ M+A +A ++G+VD VL  R +
Sbjct: 179 ERDTDRDNFMAAEQAVEYGLVDAVLSHRGE 208


>gi|330446593|ref|ZP_08310245.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490784|dbj|GAA04742.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 207

 Score =  298 bits (763), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 130/208 (62%), Positives = 165/208 (79%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS++   K     +   LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ 
Sbjct: 1   MSYQ--EKNAMSPILDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE+ENP K+I LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLA 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
            G KG R+ LPN+R+++HQP GGF GQASDI+ HAQ+I+ IK+RLN +  ++ G+  E +
Sbjct: 119 GGAKGKRYCLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKQRLNGLLAEHTGQPLEII 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  DRD+ MSA +A ++G+VD VL  R
Sbjct: 179 ERDTDRDNFMSADQAVEYGLVDAVLSKR 206


>gi|123443342|ref|YP_001007316.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|2493738|sp|Q60107|CLPP_YEREN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166214722|sp|A1JNN2|CLPP_YERE8 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|1377852|gb|AAC45782.1| ClpP [Yersinia enterocolitica]
 gi|122090303|emb|CAL13169.1| ATP-dependent Clp protease proteolytic subunit ClpP [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 207

 Score =  298 bits (763), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 134/208 (64%), Positives = 171/208 (82%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D     + LVPMVVEQT+RGERSYDI+SRLLKERI+F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--ERDQFAPNMALVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDHMANLIT 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIFLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GGF GQA+DIE HA++I+K+K R+NE+  K+ GK+ EE+
Sbjct: 119 AGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKEILKVKSRMNELMAKHTGKSLEEI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA EA ++G+VD V   R
Sbjct: 179 ERDTERDRFLSADEAVEYGLVDSVFTRR 206


>gi|225848210|ref|YP_002728373.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644423|gb|ACN99473.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 202

 Score =  297 bits (762), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 120/199 (60%), Positives = 160/199 (80%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           + +   LVP+V+EQT RGER+YDIYSRLLK+RI+ +   I+DH+A LI AQLLFLEAE+P
Sbjct: 2   DKILNQLVPIVIEQTPRGERAYDIYSRLLKDRIILLGTPIDDHVANLIVAQLLFLEAEDP 61

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+I +YINSPGGVVTAG AIYDTM +IKP + T C+GQAASMG+ LLSAG KG R++LP
Sbjct: 62  EKDIYMYINSPGGVVTAGFAIYDTMNYIKPDVVTICIGQAASMGAFLLSAGAKGKRYSLP 121

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           NARI++HQP GGF GQA+DIE HA++I+++KR LNE   K+ G+  E++E   +RD+ MS
Sbjct: 122 NARIMIHQPLGGFQGQATDIEIHAREILRLKRMLNEYLAKHTGQPIEKIEADTERDYFMS 181

Query: 192 ASEACDWGVVDKVLMSRID 210
           A EA ++G++DKV+  R +
Sbjct: 182 AEEAKEYGLIDKVIYKRGE 200


>gi|260776382|ref|ZP_05885277.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260607605|gb|EEX33870.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 208

 Score =  297 bits (762), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 127/210 (60%), Positives = 166/210 (79%), Gaps = 2/210 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS++   K     +   LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ 
Sbjct: 1   MSYQ--EKNAMSPILDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE+ENP K+I LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLA 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
            G  G R+ LPN+R+++HQP GGF GQASDI+ HAQ+I+ IK++LN++  ++ G+  E +
Sbjct: 119 GGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKQKLNKLLAEHTGQPLEVI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           E+  DRD+ M+A +A ++G+VD VL  R +
Sbjct: 179 ERDTDRDNFMAADQAVEYGLVDAVLTHRGE 208


>gi|308185908|ref|YP_003930039.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease,
           heat shock protein F21.5 [Pantoea vagans C9-1]
 gi|308056418|gb|ADO08590.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease,
           heat shock protein F21.5 [Pantoea vagans C9-1]
          Length = 207

 Score =  297 bits (762), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 132/208 (63%), Positives = 172/208 (82%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G   ++       LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--DREYTAPHNALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTM+FIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMKFIKPDVSTICMGQACSMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQASDIE HA++I+K+K+R+NE+  ++ GKT EE+
Sbjct: 119 AGTKGKRFCLPNSRVMIHQPLGGYQGQASDIEIHAREILKVKQRMNELMAEHTGKTLEEI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA+EA ++G+VD +L  R
Sbjct: 179 ERDTERDRFLSANEAVEYGLVDSILTHR 206


>gi|319789118|ref|YP_004150751.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermovibrio
           ammonificans HB-1]
 gi|317113620|gb|ADU96110.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermovibrio
           ammonificans HB-1]
          Length = 200

 Score =  297 bits (762), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 126/197 (63%), Positives = 163/197 (82%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E++    VP+V+EQT RGER+YDIYSRLLK+RIV +   I+DH+A LI AQLLFLEAE+P
Sbjct: 2   EEILNQFVPIVIEQTGRGERAYDIYSRLLKDRIVMLGTPIDDHVANLIVAQLLFLEAEDP 61

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+I LYINSPGGVVTAG+AIYDTMQ+IKP + T CMGQAASMG++LL+AG KG RFALP
Sbjct: 62  EKDIYLYINSPGGVVTAGLAIYDTMQYIKPDVVTICMGQAASMGAVLLAAGAKGKRFALP 121

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           +ARI++HQP GGF GQA+DIE HA++I+++KR LNEI  K+  +  E+VE+  +RD+ MS
Sbjct: 122 HARIMIHQPLGGFQGQATDIEIHAKEILRLKRMLNEILAKHTRQPVEKVEQDTERDYFMS 181

Query: 192 ASEACDWGVVDKVLMSR 208
           A EA ++G++DKVL  R
Sbjct: 182 AEEAKEYGLIDKVLTRR 198


>gi|260773194|ref|ZP_05882110.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
           metschnikovii CIP 69.14]
 gi|260612333|gb|EEX37536.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
           metschnikovii CIP 69.14]
          Length = 208

 Score =  297 bits (762), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 125/210 (59%), Positives = 164/210 (78%), Gaps = 2/210 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS++   K     +   LVPMVVEQT+RGERSYDIYSRLLK+R++F+TGQ+EDHMA L+ 
Sbjct: 1   MSYQ--EKNAMSPIIDALVPMVVEQTSRGERSYDIYSRLLKDRVIFLTGQVEDHMANLVV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE+ENP K+I LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+ LL+
Sbjct: 59  AQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNVSTLCVGQACSMGAFLLA 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
            G  G R+ LPN+R+++HQP GGF GQASDI+ HAQ+I+ IK +LN +  ++ G+  + +
Sbjct: 119 GGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILSIKNKLNTLLAEHTGQPLDVI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           E+  DRD+ MSA +A D+G+VD +L  R +
Sbjct: 179 ERDTDRDNFMSAQQAVDYGIVDAILTHRGE 208


>gi|205351759|ref|YP_002225560.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205271540|emb|CAR36358.1| ATP-dependent clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
          Length = 207

 Score =  297 bits (762), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 129/208 (62%), Positives = 172/208 (82%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  + D+    + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--ELDNLAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+   + G++ E++
Sbjct: 119 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA EA ++G+VD +L  R
Sbjct: 179 ERDTERDRFLSAPEAVEYGLVDSILTHR 206


>gi|304395499|ref|ZP_07377382.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pantoea sp.
           aB]
 gi|304356793|gb|EFM21157.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pantoea sp.
           aB]
          Length = 207

 Score =  297 bits (762), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 133/208 (63%), Positives = 172/208 (82%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G   ++       LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--DREYTAPHNALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTM+FIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMKFIKPDVSTICMGQACSMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQASDIE HA++I+K+K+R+NE+  ++ GKT EE+
Sbjct: 119 AGTKGKRFCLPNSRVMIHQPLGGYQGQASDIEIHAREILKVKQRMNELMAEHTGKTLEEI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SASEA ++G+VD +L  R
Sbjct: 179 ERDTERDRFLSASEAVEYGLVDSILTHR 206


>gi|31340017|sp|Q8DG26|CLPP_VIBVU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|60389705|sp|Q7MMG7|CLPP_VIBVY RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
          Length = 200

 Score =  297 bits (762), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 125/197 (63%), Positives = 159/197 (80%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
             +   LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ AQLLFLE+ENP
Sbjct: 2   SPIIDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENP 61

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+I LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+ G  G R+ LP
Sbjct: 62  DKDIFLYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLP 121

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+R+++HQP GGF GQASDI+ HAQ+I+ IK +LN++  ++ G+  E +E+  DRD+ MS
Sbjct: 122 NSRVMIHQPLGGFQGQASDIQIHAQEILTIKTKLNKLLAEHTGQPLEVIERDTDRDNFMS 181

Query: 192 ASEACDWGVVDKVLMSR 208
           A +A ++G+VD VL  R
Sbjct: 182 ADQAVEYGLVDAVLTHR 198


>gi|271499597|ref|YP_003332622.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dickeya
           dadantii Ech586]
 gi|270343152|gb|ACZ75917.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dickeya
           dadantii Ech586]
          Length = 207

 Score =  297 bits (761), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 132/208 (63%), Positives = 173/208 (83%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  +K +    + LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+ED+MA LI 
Sbjct: 1   MSYSGEQEKLA--PHMALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDYMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GGF GQA+DIE HA++I+K+K R+NE+  K+ G++ + +
Sbjct: 119 AGTKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKEILKVKARMNELMAKHTGQSLDVI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA+EA ++G+VD VL  R
Sbjct: 179 ERDTERDRFLSAAEAVEYGLVDSVLTHR 206


>gi|291616549|ref|YP_003519291.1| ClpP [Pantoea ananatis LMG 20103]
 gi|291151579|gb|ADD76163.1| ClpP [Pantoea ananatis LMG 20103]
 gi|327392981|dbj|BAK10403.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pantoea
           ananatis AJ13355]
          Length = 218

 Score =  297 bits (761), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 131/208 (62%), Positives = 172/208 (82%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G   ++       LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 12  MSYSG--DREFTAPHNALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLIV 69

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTM+FIKP +ST CMGQA SMG+ LL+
Sbjct: 70  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMKFIKPDVSTICMGQACSMGAFLLT 129

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K+R+NE+  ++ GK+ EE+
Sbjct: 130 AGTKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKQRMNELMAEHTGKSLEEI 189

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SASEA ++G+VD +L  R
Sbjct: 190 ERDTERDRFLSASEAVEYGLVDSILTHR 217


>gi|85058649|ref|YP_454351.1| ATP-dependent Clp protease proteolytic subunit [Sodalis
           glossinidius str. 'morsitans']
 gi|84779169|dbj|BAE73946.1| ATP-dependent Clp protease proteolytic subunit [Sodalis
           glossinidius str. 'morsitans']
          Length = 207

 Score =  297 bits (761), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 135/209 (64%), Positives = 173/209 (82%), Gaps = 2/209 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D+    + LVPMVVEQT+RGERSYDI+SRLLKERI+F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--EQDNFAPHMALVPMVVEQTSRGERSYDIFSRLLKERIIFMTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ++FLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +STFCMGQAASMG+ LL+
Sbjct: 59  AQMMFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTFCMGQAASMGAFLLA 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GGF GQA+DIE HA++I+K+K R+NE+  K+ G+  E +
Sbjct: 119 AGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAREILKVKARMNELMAKHTGQPLEVI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           E+  +RD  +SA EA D+G+VD VL  R 
Sbjct: 179 ERDTERDRFLSAPEAVDYGLVDSVLSQRT 207


>gi|329296782|ref|ZP_08254118.1| ClpP [Plautia stali symbiont]
          Length = 207

 Score =  297 bits (761), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 130/208 (62%), Positives = 172/208 (82%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G   ++       LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--DREFTAPTNALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTM+FIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMKFIKPDVSTICMGQACSMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K+R+NE+  ++ GK+ E++
Sbjct: 119 AGTKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKQRMNELMAEHTGKSLEQI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SASEA ++G+VD +L  R
Sbjct: 179 ERDTERDRFLSASEAVEYGLVDSILTHR 206


>gi|323498276|ref|ZP_08103278.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sinaloensis
           DSM 21326]
 gi|323316704|gb|EGA69713.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sinaloensis
           DSM 21326]
          Length = 208

 Score =  297 bits (761), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 127/210 (60%), Positives = 166/210 (79%), Gaps = 2/210 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS++   K     +   LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ 
Sbjct: 1   MSYQ--EKNAMSPILDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE+ENP K+I LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLA 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
            G  G R+ LPN+R+++HQP GGF GQASDI+ HAQ+I+ IK++LN++  ++ G+  E +
Sbjct: 119 GGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKQKLNKLLAEHTGQPLEVI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           E+  DRD+ M+A +A ++G+VD VL  R +
Sbjct: 179 ERDTDRDNFMAADQAVEYGLVDAVLSHRGE 208


>gi|260768947|ref|ZP_05877881.1| ATP-dependent Clp protease proteolytic subunit [Vibrio furnissii
           CIP 102972]
 gi|260616977|gb|EEX42162.1| ATP-dependent Clp protease proteolytic subunit [Vibrio furnissii
           CIP 102972]
 gi|315180643|gb|ADT87557.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           furnissii NCTC 11218]
          Length = 208

 Score =  297 bits (760), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 126/210 (60%), Positives = 163/210 (77%), Gaps = 2/210 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS++   K     +   LVPMVVEQT+RGERSYDIYSRLLK+R++F+TGQ+EDHMA L+ 
Sbjct: 1   MSYQ--EKNVMSPIIDALVPMVVEQTSRGERSYDIYSRLLKDRVIFLTGQVEDHMANLVV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE+ENP K+I LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+ LL+
Sbjct: 59  AQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNVSTLCIGQACSMGAFLLA 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
            G  G R+ LPN+R+++HQP GGF GQASDI+ HAQ+I+ IK +LN +   + G+  E +
Sbjct: 119 GGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKNKLNRLLADHTGQPLEVI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           E+  DRD+ MSA +A D+G+VD +L  R +
Sbjct: 179 ERDTDRDNFMSAQQAVDYGLVDALLTHRGE 208


>gi|60389653|sp|Q6LNW0|CLPP_PHOPR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
          Length = 199

 Score =  297 bits (760), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 128/192 (66%), Positives = 157/192 (81%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ AQLLFLE+ENP K+I 
Sbjct: 7   ALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIF 66

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+ G KG R+ LPN+R++
Sbjct: 67  LYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAKGKRYCLPNSRVM 126

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDI+ HA++I+ IK RLN +  K+ G+  E VE   DRD+ MSA +A 
Sbjct: 127 IHQPLGGFQGQASDIQIHAKEILTIKHRLNSLLAKHTGQPLEVVEGDTDRDNFMSADQAV 186

Query: 197 DWGVVDKVLMSR 208
           ++G+VD VL  R
Sbjct: 187 EYGLVDSVLTQR 198


>gi|227328849|ref|ZP_03832873.1| ATP-dependent Clp protease proteolytic subunit [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 207

 Score =  297 bits (760), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 130/208 (62%), Positives = 170/208 (81%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++  +   + LVPMVVEQT+RGERSYDIYSRLLKERI+F+TGQ+ED+MA L+ 
Sbjct: 1   MSYSGEQER--QAPHMALVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDYMANLVV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG R  LPN+R+++HQP GGF GQA+DIE HA++I+K+K ++NE+  K+ G+  E +
Sbjct: 119 AGAKGKRICLPNSRVMIHQPLGGFQGQATDIEIHAKEILKVKAKMNELMAKHTGQPLEAI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SASEA D+G+VD V  +R
Sbjct: 179 ERDTERDRFLSASEAVDYGLVDSVFTNR 206


>gi|50120087|ref|YP_049254.1| ATP-dependent Clp protease proteolytic subunit [Pectobacterium
           atrosepticum SCRI1043]
 gi|60389567|sp|Q6D827|CLPP_ERWCT RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|49610613|emb|CAG74058.1| ATP-dependent Clp protease proteolytic subunit [Pectobacterium
           atrosepticum SCRI1043]
          Length = 207

 Score =  297 bits (760), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 129/208 (62%), Positives = 169/208 (81%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++  +   + LVPMVVEQT RGERSYDIYSRLLKERI+F+TGQ+ED+MA L+ 
Sbjct: 1   MSYSGEQER--QAPHMALVPMVVEQTARGERSYDIYSRLLKERIIFLTGQVEDYMANLVV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG R  LPN+R+++HQP GGF GQA+DIE HA++I+K+K ++NE+  K+ G+  E +
Sbjct: 119 AGAKGKRICLPNSRVMIHQPLGGFQGQATDIEIHAKEILKVKAKMNELMAKHTGQPLEAI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SASEA ++G+VD V  +R
Sbjct: 179 ERDTERDRFLSASEAVEYGLVDSVFTNR 206


>gi|238751006|ref|ZP_04612502.1| ATP-dependent Clp protease proteolytic subunit [Yersinia rohdei
           ATCC 43380]
 gi|238710696|gb|EEQ02918.1| ATP-dependent Clp protease proteolytic subunit [Yersinia rohdei
           ATCC 43380]
          Length = 207

 Score =  297 bits (760), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 132/208 (63%), Positives = 170/208 (81%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D     + LVPMVVEQT+RGERSYDI+SRLLKERI+F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--ERDQFAPNMALVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDHMANLIT 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIFLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GGF GQA+DIE HA++I+K+K R+NE+   + GK+ EE+
Sbjct: 119 AGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKEILKVKSRMNELMAHHTGKSLEEI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA +A ++G+VD V   R
Sbjct: 179 ERDTERDRFLSAEQAVEYGLVDSVFTRR 206


>gi|153829246|ref|ZP_01981913.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           cholerae 623-39]
 gi|148875284|gb|EDL73419.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           cholerae 623-39]
          Length = 200

 Score =  297 bits (760), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 125/199 (62%), Positives = 159/199 (79%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
             +F   VPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ AQLLFLE+ENP
Sbjct: 2   SPIFDAXVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENP 61

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+I LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+ G  G R+ LP
Sbjct: 62  DKDIFLYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLP 121

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+R+++HQP GGF GQASDI+ HAQ+I+ IK +LN +  ++ G+  E +E+  DRD+ MS
Sbjct: 122 NSRVMIHQPLGGFQGQASDIQIHAQEILTIKNKLNRLLAEHTGQPIEVIERDTDRDNFMS 181

Query: 192 ASEACDWGVVDKVLMSRID 210
           A +A ++G+VD VL  R +
Sbjct: 182 ADQAVEYGLVDAVLKHRGE 200


>gi|300715591|ref|YP_003740394.1| ATP-dependent Clp protease proteolytic subunit [Erwinia billingiae
           Eb661]
 gi|299061427|emb|CAX58539.1| ATP-dependent Clp protease proteolytic subunit [Erwinia billingiae
           Eb661]
          Length = 215

 Score =  297 bits (760), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 133/209 (63%), Positives = 174/209 (83%), Gaps = 2/209 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  +++     + LVPMVVEQT+RGERSYDI+SRLLKERI+F+TGQ+EDHMA LI 
Sbjct: 9   MSYSG--EREQTAPHMALVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDHMANLIV 66

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTM+FIKP +ST CMGQA SMG+ LL+
Sbjct: 67  AQMLFLEAENPEKDIHLYINSPGGVITAGMSIYDTMKFIKPDVSTICMGQACSMGAFLLT 126

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG R+ALPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+  ++ GKT EE+
Sbjct: 127 AGTKGKRYALPNSRVMIHQPLGGYQGQATDIEIHAREILKVKARMNELMAEHTGKTLEEI 186

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           E+  +RD  +SASEA ++G+VD VL  R 
Sbjct: 187 ERDTERDRFLSASEAVEYGLVDSVLTHRT 215


>gi|311280666|ref|YP_003942897.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterobacter
           cloacae SCF1]
 gi|308749861|gb|ADO49613.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterobacter
           cloacae SCF1]
          Length = 207

 Score =  297 bits (760), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 128/209 (61%), Positives = 172/209 (82%), Gaps = 2/209 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D+    + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--ERDNFAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+  ++ G++  ++
Sbjct: 119 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKARMNELMAQHTGQSLAQI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           E   +RD  +SA EA ++G+VD +L  R 
Sbjct: 179 ESDTERDRFLSAPEAVEYGLVDSILTHRK 207


>gi|127513436|ref|YP_001094633.1| ATP-dependent Clp protease proteolytic subunit [Shewanella loihica
           PV-4]
 gi|171855248|sp|A3QFX6|CLPP_SHELP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|126638731|gb|ABO24374.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella
           loihica PV-4]
          Length = 203

 Score =  296 bits (759), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 127/198 (64%), Positives = 158/198 (79%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
            E V   LVPMVVEQT +GERSYDIYSRLLKER++F+ GQ+E+HMA LI AQLLFLE+E+
Sbjct: 5   PESVLNALVPMVVEQTAKGERSYDIYSRLLKERVIFLVGQVEEHMANLIVAQLLFLESES 64

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
           P K+I LYINSPGG VTAGMAIYDTMQFIKP +ST C+GQAASMG+ LL+ G KG R  L
Sbjct: 65  PDKDIYLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFLLAGGAKGKRHCL 124

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           PN+R+++HQP GGF GQASDI  HAQ+I+ IK +LN++   + G+  E +E+  DRD+ M
Sbjct: 125 PNSRVMIHQPLGGFQGQASDIAIHAQEILGIKNKLNQMLADHTGQPLEVIERDTDRDNFM 184

Query: 191 SASEACDWGVVDKVLMSR 208
           SA+EA ++G+VD VL  R
Sbjct: 185 SATEAAEYGLVDSVLDKR 202


>gi|261253459|ref|ZP_05946032.1| ATP-dependent Clp protease proteolytic subunit [Vibrio orientalis
           CIP 102891]
 gi|260936850|gb|EEX92839.1| ATP-dependent Clp protease proteolytic subunit [Vibrio orientalis
           CIP 102891]
          Length = 208

 Score =  296 bits (759), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 127/210 (60%), Positives = 166/210 (79%), Gaps = 2/210 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS++   K     +   LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ 
Sbjct: 1   MSYQ--EKNTMPSIMDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE+ENP K+I LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLA 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
            G  G R+ LPN+R+++HQP GGF GQASDI+ HAQ+I+ IK++LN++  ++ G+  E +
Sbjct: 119 GGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKQKLNKLLAEHTGQPLEVI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           E+  DRD+ M+A +A ++G+VD VL  R +
Sbjct: 179 ERDTDRDNFMAADQAVEYGLVDAVLTHRGE 208


>gi|153839648|ref|ZP_01992315.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           parahaemolyticus AQ3810]
 gi|260902813|ref|ZP_05911208.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           parahaemolyticus AQ4037]
 gi|149746838|gb|EDM57826.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           parahaemolyticus AQ3810]
 gi|308108649|gb|EFO46189.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           parahaemolyticus AQ4037]
 gi|328473326|gb|EGF44174.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
           parahaemolyticus 10329]
          Length = 208

 Score =  296 bits (759), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 128/208 (61%), Positives = 164/208 (78%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS++   K     +   LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ 
Sbjct: 1   MSYQ--EKNAMSPIMDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE+ENP K+I LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLA 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
            G  G R+ LPN+R+++HQP GGF GQASDI+ HAQ+I+ IK++LN +  ++ G+  E +
Sbjct: 119 GGAAGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKQKLNNLLAEHTGQPLEVI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  DRD+ MSA +A ++G+VD VL  R
Sbjct: 179 ERDTDRDNFMSAEQAVEYGIVDAVLSHR 206


>gi|332141945|ref|YP_004427683.1| ATP-dependent Clp protease proteolytic subunit [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327551967|gb|AEA98685.1| ATP-dependent Clp protease proteolytic subunit [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 209

 Score =  296 bits (759), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 129/202 (63%), Positives = 164/202 (81%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
              D    LVPMVVEQT++GERSYDIYSRLLKE ++F+ GQ+EDHMA LI AQ+LFLEAE
Sbjct: 4   TPFDPMNALVPMVVEQTSKGERSYDIYSRLLKENVIFLVGQVEDHMANLIVAQMLFLEAE 63

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP+K+I LYINSPGG VTAGMAIYDTM+FIKP +ST CMGQAASMG+ LLSAG KG R+ 
Sbjct: 64  NPEKDIFLYINSPGGSVTAGMAIYDTMRFIKPDVSTVCMGQAASMGAFLLSAGAKGKRYC 123

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPN+R+++HQP GGF GQASD E HA++I+ IK +LN +   + G+ YE+V +  DRD+ 
Sbjct: 124 LPNSRVMIHQPLGGFQGQASDFEIHAKEILSIKEKLNRLLADHTGQDYEKVARDTDRDNF 183

Query: 190 MSASEACDWGVVDKVLMSRIDI 211
           +SA+EA ++G+VD+VL +R D+
Sbjct: 184 LSATEAKEYGLVDQVLANRSDV 205


>gi|325294216|ref|YP_004280730.1| ATP-dependent Clp protease proteolytic subunit [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325064664|gb|ADY72671.1| ATP-dependent Clp protease proteolytic subunit [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 200

 Score =  296 bits (759), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 123/199 (61%), Positives = 164/199 (82%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E++    VP+V+EQT RGER+YDIYSRLLK+RI+ +   I+DH+A LI AQLLFLEAE+P
Sbjct: 2   EEILNQFVPIVIEQTGRGERAYDIYSRLLKDRIIMLGTPIDDHVANLIVAQLLFLEAEDP 61

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+I LYINSPGGVVTAG+AIYDTMQ+IKP + T C+GQAASMG++LL+AG KG RFALP
Sbjct: 62  EKDIYLYINSPGGVVTAGLAIYDTMQYIKPDVVTICLGQAASMGAVLLAAGAKGKRFALP 121

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           +ARI++HQP GGF GQA+DIE HA++I+++K+ LNEI  K+ G++  ++EK  +RD+ MS
Sbjct: 122 HARIMIHQPLGGFQGQATDIEIHAKEILRLKKMLNEILSKHTGQSLRKIEKDTERDYFMS 181

Query: 192 ASEACDWGVVDKVLMSRID 210
           A EA  +G++DKVL  R +
Sbjct: 182 AEEAQKYGLIDKVLTRRGE 200


>gi|238023189|ref|ZP_04603615.1| hypothetical protein GCWU000324_03115 [Kingella oralis ATCC 51147]
 gi|237865572|gb|EEP66712.1| hypothetical protein GCWU000324_03115 [Kingella oralis ATCC 51147]
          Length = 206

 Score =  296 bits (759), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 120/196 (61%), Positives = 160/196 (81%), Gaps = 2/196 (1%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            L+P V+EQ+ RGER++DIYSRLLKERI+F+ G + DH A L+ AQLLFLE+ENP K+I 
Sbjct: 9   TLIPTVIEQSGRGERAFDIYSRLLKERIIFLVGPVNDHTANLVVAQLLFLESENPDKDIY 68

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            YINSPGG VTAGM+IYDTM+FIKP + T C+GQAASMG+ LLSAG KG RFALPN+R++
Sbjct: 69  FYINSPGGSVTAGMSIYDTMKFIKPDVQTLCLGQAASMGAFLLSAGTKGKRFALPNSRVM 128

Query: 137 LHQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           +HQP  SGG  GQASDIE HA++++K+K +LN++  ++ GK+ E++E+  DRD+ MSA E
Sbjct: 129 IHQPLISGGLGGQASDIEIHARELLKLKEKLNQMLAEHTGKSLEQIERDTDRDNFMSAQE 188

Query: 195 ACDWGVVDKVLMSRID 210
           A D+G++DKV+ +R D
Sbjct: 189 AADYGLIDKVITTRAD 204


>gi|332160749|ref|YP_004297326.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|318604628|emb|CBY26126.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325664979|gb|ADZ41623.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330859950|emb|CBX70279.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
           enterocolitica W22703]
          Length = 207

 Score =  296 bits (758), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 134/208 (64%), Positives = 170/208 (81%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D     + LVPMVVEQT+RGERSYDI+SRLLKERI+F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--ERDQFAPNMALVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDHMANLIT 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIFLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GGF GQA+DIE HA++I+K+K R+NE+  K+ GK+ EE+
Sbjct: 119 AGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKEILKVKSRMNELMAKHTGKSLEEI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA EA  +G+VD V   R
Sbjct: 179 ERDTERDRFLSADEAVKYGLVDSVFTRR 206


>gi|91228617|ref|ZP_01262535.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
           alginolyticus 12G01]
 gi|254229904|ref|ZP_04923307.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio sp.
           Ex25]
 gi|262394815|ref|YP_003286669.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. Ex25]
 gi|269965580|ref|ZP_06179694.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
           alginolyticus 40B]
 gi|91187849|gb|EAS74163.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
           alginolyticus 12G01]
 gi|151937540|gb|EDN56395.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio sp.
           Ex25]
 gi|262338409|gb|ACY52204.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. Ex25]
 gi|269829805|gb|EEZ84040.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
           alginolyticus 40B]
          Length = 208

 Score =  296 bits (758), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 127/210 (60%), Positives = 166/210 (79%), Gaps = 2/210 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS++   K     +   LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ 
Sbjct: 1   MSYQ--EKNAMSPIMDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE+ENP K+I LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLA 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
            G  G R+ LPN+R+++HQP GGF GQASDI+ HAQ+I+ IK++LN++  ++ G+  E +
Sbjct: 119 GGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKQKLNKLLAEHTGQPLEVI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           E+  DRD+ MS+ +A ++G+VD VL  R +
Sbjct: 179 ERDTDRDNFMSSEQAVEYGIVDAVLSHRGE 208


>gi|88860444|ref|ZP_01135082.1| ATP-dependent Clp protease proteolytic subunit [Pseudoalteromonas
           tunicata D2]
 gi|88817642|gb|EAR27459.1| ATP-dependent Clp protease proteolytic subunit [Pseudoalteromonas
           tunicata D2]
          Length = 205

 Score =  296 bits (758), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 126/197 (63%), Positives = 157/197 (79%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
            D    LVPMVVEQT +GERSYDIYSRLLKER++F+TGQ+EDHMA LI AQLLFLE+ENP
Sbjct: 6   TDPLNALVPMVVEQTAKGERSYDIYSRLLKERVIFLTGQVEDHMANLIVAQLLFLESENP 65

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+I +YINSPGG VTAGMAIYDTM FIKP +ST CMGQAASMG+ LLS G KG RF LP
Sbjct: 66  EKDIFIYINSPGGSVTAGMAIYDTMNFIKPNVSTVCMGQAASMGAFLLSGGTKGKRFCLP 125

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+R+++HQP GGF GQASD E HA++I+ IK +LN +  ++ G+  E + +  DRD+ MS
Sbjct: 126 NSRVMIHQPLGGFQGQASDFEIHAREILSIKDKLNRLLAEHTGQPIEVISRDTDRDNFMS 185

Query: 192 ASEACDWGVVDKVLMSR 208
            ++A ++G+VD VL  R
Sbjct: 186 GAQAVEYGIVDAVLTQR 202


>gi|24373360|ref|NP_717403.1| ATP-dependent Clp protease proteolytic subunit [Shewanella
           oneidensis MR-1]
 gi|60389791|sp|Q8EG19|CLPP_SHEON RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|24347620|gb|AAN54847.1|AE015623_9 ATP-dependent Clp protease, proteolytic subunit [Shewanella
           oneidensis MR-1]
          Length = 202

 Score =  296 bits (758), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 125/199 (62%), Positives = 162/199 (81%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           ++ D+   LVPMV+EQT +GERS+DIYSRLLKERI+F+ GQ+E+HMA LI AQLLFLE+E
Sbjct: 3   NASDIQSALVPMVIEQTAKGERSFDIYSRLLKERIIFLVGQVEEHMANLIVAQLLFLESE 62

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           +P K+I LYINSPGG VTAGMAIYDTMQFIKP +ST C+GQAASMG+ LL+ GEKG RF 
Sbjct: 63  SPDKDIFLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFLLAGGEKGKRFC 122

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPN+R+++HQP GGF GQASDI  HAQ+I+ IK +LN++   + G+  E +E+  DRD+ 
Sbjct: 123 LPNSRVMIHQPLGGFQGQASDIAIHAQEILGIKNKLNQMLADHTGQPLEVIERDTDRDNF 182

Query: 190 MSASEACDWGVVDKVLMSR 208
           MSA++A ++G+VD V+  R
Sbjct: 183 MSATQAVEYGLVDAVMTKR 201


>gi|126173838|ref|YP_001049987.1| ATP-dependent Clp protease proteolytic subunit [Shewanella baltica
           OS155]
 gi|153000122|ref|YP_001365803.1| ATP-dependent Clp protease proteolytic subunit [Shewanella baltica
           OS185]
 gi|160874744|ref|YP_001554060.1| ATP-dependent Clp protease proteolytic subunit [Shewanella baltica
           OS195]
 gi|217973910|ref|YP_002358661.1| ATP-dependent Clp protease proteolytic subunit [Shewanella baltica
           OS223]
 gi|304409711|ref|ZP_07391331.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
           baltica OS183]
 gi|307304067|ref|ZP_07583820.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
           baltica BA175]
 gi|166214708|sp|A3D305|CLPP_SHEB5 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166214709|sp|A6WLQ1|CLPP_SHEB8 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|189082464|sp|A9KWH7|CLPP_SHEB9 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|254763799|sp|B8E5E9|CLPP_SHEB2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|125997043|gb|ABN61118.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella
           baltica OS155]
 gi|151364740|gb|ABS07740.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
           baltica OS185]
 gi|160860266|gb|ABX48800.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
           baltica OS195]
 gi|217499045|gb|ACK47238.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
           baltica OS223]
 gi|304352229|gb|EFM16627.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
           baltica OS183]
 gi|306912965|gb|EFN43388.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
           baltica BA175]
 gi|315266986|gb|ADT93839.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
           baltica OS678]
          Length = 202

 Score =  296 bits (758), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 125/199 (62%), Positives = 162/199 (81%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           ++ D+   LVPMV+EQT +GERSYDIYSRLLKERI+F+ GQ+E+HMA LI AQLLFLE+E
Sbjct: 3   NASDIQSALVPMVIEQTAKGERSYDIYSRLLKERIIFLVGQVEEHMANLIVAQLLFLESE 62

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           +P K+I LYINSPGG VTAGMAIYDTMQFIKP +ST C+GQAASMG+ LL+ GEKG R  
Sbjct: 63  SPDKDIFLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFLLAGGEKGKRHC 122

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPN+R+++HQP GGF GQASDI  HA++I+ IK +LN++  ++ G+  E VE+  DRD+ 
Sbjct: 123 LPNSRVMIHQPLGGFQGQASDIAIHAKEILGIKNKLNQMLAEHTGQPLEVVERDTDRDNF 182

Query: 190 MSASEACDWGVVDKVLMSR 208
           MSA++A ++G+VD V+  R
Sbjct: 183 MSATQAVEYGLVDSVMTKR 201


>gi|237807855|ref|YP_002892295.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Tolumonas
           auensis DSM 9187]
 gi|237500116|gb|ACQ92709.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Tolumonas
           auensis DSM 9187]
          Length = 207

 Score =  296 bits (758), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 126/198 (63%), Positives = 157/198 (79%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
                 LVP+VVEQT RGERSYDIYSRLLKER++F+TGQ+ED MA LI AQLLFLE+ENP
Sbjct: 10  SSPLNSLVPIVVEQTARGERSYDIYSRLLKERVIFLTGQVEDQMANLIVAQLLFLESENP 69

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+I +YINSPGG VTAGMAIYDT++FIKP +ST CMGQA SMG+ LLSAG KG RF LP
Sbjct: 70  DKDIYIYINSPGGSVTAGMAIYDTLKFIKPDVSTVCMGQACSMGAFLLSAGTKGKRFCLP 129

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           +AR+++HQP GGF GQASDI+ HA +I+KIK RLN +  ++ G+  E +E+  DRD+ MS
Sbjct: 130 SARVMIHQPLGGFQGQASDIQIHAMEILKIKERLNNLLAEHTGQPLERIERDTDRDNFMS 189

Query: 192 ASEACDWGVVDKVLMSRI 209
           A +A ++G+VD +L  R 
Sbjct: 190 ADQAVEYGLVDAILKKRA 207


>gi|90410782|ref|ZP_01218797.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium
           profundum 3TCK]
 gi|90328413|gb|EAS44711.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium
           profundum 3TCK]
          Length = 207

 Score =  296 bits (757), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 130/208 (62%), Positives = 164/208 (78%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS++   +     +   LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ 
Sbjct: 1   MSYQ--ERNAMSPITDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE+ENP K+I LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLA 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
            G KG R+ LPN+R+++HQP GGF GQASDI+ HAQ+I+ IK+RLN +  ++ G+  E V
Sbjct: 119 GGAKGKRYCLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKQRLNNLLAEHTGQPLEIV 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E   DRD+ MSA +A ++G+VD VL  R
Sbjct: 179 EGDTDRDNFMSADQAVEYGLVDSVLTQR 206


>gi|293392545|ref|ZP_06636865.1| ATP-dependent Clp protease proteolytic subunit [Serratia odorifera
           DSM 4582]
 gi|291424947|gb|EFE98156.1| ATP-dependent Clp protease proteolytic subunit [Serratia odorifera
           DSM 4582]
          Length = 207

 Score =  296 bits (757), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 129/208 (62%), Positives = 172/208 (82%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D     + LVPMVVEQT+RGERSYDIYSRLLKERI+F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--EQDQFAPHMALVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAE+P+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMGS LL+
Sbjct: 59  AQMLFLEAESPEKDIFLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGSFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+  ++ G++ E++
Sbjct: 119 AGTKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKARMNELMAQHTGQSLEQI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           ++  +RD  M+A E+ ++G+VD +L  R
Sbjct: 179 DRDTERDRFMTAEESVEYGLVDGILTHR 206


>gi|319943618|ref|ZP_08017899.1| ATP-dependent Clp protease proteolytic subunit [Lautropia mirabilis
           ATCC 51599]
 gi|319742851|gb|EFV95257.1| ATP-dependent Clp protease proteolytic subunit [Lautropia mirabilis
           ATCC 51599]
          Length = 262

 Score =  296 bits (757), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 113/200 (56%), Positives = 157/200 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG+VP+V+EQ+ RGER+YDIYSRLL+ER+VF+ G + D  A L  AQ+L+LE+ENP K+I
Sbjct: 58  LGMVPIVIEQSGRGERAYDIYSRLLRERVVFLVGPVMDQSANLAVAQMLYLESENPDKDI 117

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG V+AG+ I+DTMQF+KP +ST C+G AASMG+ LL+AG KG R +LPN+RI
Sbjct: 118 HFYINSPGGSVSAGLGIFDTMQFVKPDVSTLCIGFAASMGAFLLAAGAKGKRHSLPNSRI 177

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQASDIE HA++I+ +++RLN+I     G+  E +E+  +RD+ MSA EA
Sbjct: 178 MIHQPSGGAQGQASDIEIHAKEIIYLRKRLNQILADRTGQPLERIERDTERDNFMSADEA 237

Query: 196 CDWGVVDKVLMSRIDIEEKS 215
            ++G++DKV+ SR +   K+
Sbjct: 238 LEYGLIDKVMTSRTEATAKA 257


>gi|225175200|ref|ZP_03729196.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dethiobacter
           alkaliphilus AHT 1]
 gi|225169376|gb|EEG78174.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dethiobacter
           alkaliphilus AHT 1]
          Length = 193

 Score =  296 bits (757), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 116/193 (60%), Positives = 158/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQTNRGER+YDIYSRLLK+RI+F+   I+D++A L+ AQLLFLE+E+P+K+I
Sbjct: 1   MNLVPMVVEQTNRGERAYDIYSRLLKDRIIFIGSPIDDNVANLVIAQLLFLESEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           ++Y+NSPGG V AG+AIYDTMQ+IKP +ST C+G AASMG++LL+AG  G RF+LPN+RI
Sbjct: 61  NIYVNSPGGSVYAGLAIYDTMQYIKPDVSTICVGLAASMGAVLLAAGADGKRFSLPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA DIE HA++I++I+ RLNEI   + GK  E++ +  DRD+ MSA +A
Sbjct: 121 MVHQPLGGAQGQAVDIEIHAKEILRIRERLNEILSGHTGKPVEQIARDTDRDYFMSAEQA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++D VL  R
Sbjct: 181 KEYGLIDGVLEKR 193


>gi|237755491|ref|ZP_04584113.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692355|gb|EEP61341.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 201

 Score =  296 bits (757), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 118/199 (59%), Positives = 160/199 (80%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           + +   L+P+V+EQT RGER+YDIYSRLLK+RI+ +   I+DH+A L+ AQLLFLE+E+P
Sbjct: 2   DKILNQLIPIVIEQTPRGERAYDIYSRLLKDRIILLGTPIDDHIANLVVAQLLFLESEDP 61

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+I +YINSPGGVVTAG+AIYDTM +IKP + T CMGQAASMG+ LLSAG KG R++LP
Sbjct: 62  DKDIYMYINSPGGVVTAGLAIYDTMNYIKPDVVTICMGQAASMGAFLLSAGAKGKRYSLP 121

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           NARI++HQP GGF GQA+DIE HA++I+++KR LNE   K+ G+  E++E   +RD+ MS
Sbjct: 122 NARIMIHQPLGGFQGQATDIEIHAKEILRLKRMLNEYLAKHTGQPIEKIEADTERDYFMS 181

Query: 192 ASEACDWGVVDKVLMSRID 210
           A EA ++G++DKV+  R +
Sbjct: 182 AEEAKEYGLIDKVIYKRGE 200


>gi|238764860|ref|ZP_04625801.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
           kristensenii ATCC 33638]
 gi|238696967|gb|EEP89743.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
           kristensenii ATCC 33638]
          Length = 207

 Score =  296 bits (757), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 132/208 (63%), Positives = 170/208 (81%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D     + LVPMVVEQT+RGERSYDI+SRLLKERI+F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--ERDQFAPNMALVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDHMANLIT 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIFLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GGF GQA+DIE HA++I+K+K R+NE+   + GK+ EE+
Sbjct: 119 AGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAREILKVKSRMNELMALHTGKSLEEI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA +A ++G+VD V   R
Sbjct: 179 ERDTERDRFLSAEQAVEYGLVDSVFTRR 206


>gi|188996270|ref|YP_001930521.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931337|gb|ACD65967.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 201

 Score =  295 bits (756), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 118/199 (59%), Positives = 160/199 (80%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           + +   L+P+V+EQT RGER+YDIYSRLLK+RI+ +   I+DH+A L+ AQLLFLE+E+P
Sbjct: 2   DKILNQLIPIVIEQTPRGERAYDIYSRLLKDRIILLGTPIDDHIANLVVAQLLFLESEDP 61

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+I +YINSPGGVVTAG+AIYDTM +IKP + T CMGQAASMG+ LLSAG KG R++LP
Sbjct: 62  DKDIYMYINSPGGVVTAGLAIYDTMNYIKPDVVTICMGQAASMGAFLLSAGAKGKRYSLP 121

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           NARI++HQP GGF GQA+DIE HA++I+++KR LNE   K+ G+  E++E   +RD+ MS
Sbjct: 122 NARIMIHQPLGGFQGQATDIEIHAREILRLKRMLNEYLAKHTGQPIEKIEADTERDYFMS 181

Query: 192 ASEACDWGVVDKVLMSRID 210
           A EA ++G++DKV+  R +
Sbjct: 182 AEEAKEYGLIDKVIYKRGE 200


>gi|322834046|ref|YP_004214073.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rahnella sp.
           Y9602]
 gi|321169247|gb|ADW74946.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rahnella sp.
           Y9602]
          Length = 207

 Score =  295 bits (756), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 131/209 (62%), Positives = 170/209 (81%), Gaps = 2/209 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  +++     + LVPMVVEQT+RGERSYDI+SRLLKERI+F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--EREQFAPNMALVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAE+P+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQMLFLEAESPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG +G RF LPN+R+++HQP GGF GQA+DIE HA++I+K+K R+NE+  K+ GK+ EE+
Sbjct: 119 AGAEGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKEILKVKSRMNELMAKHTGKSLEEI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           E+  +RD  +SA EA  +G+VD V   R 
Sbjct: 179 ERDTERDRFLSADEAVQYGLVDSVFTHRA 207


>gi|300721991|ref|YP_003711271.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
           [Xenorhabdus nematophila ATCC 19061]
 gi|297628488|emb|CBJ89055.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
           [Xenorhabdus nematophila ATCC 19061]
          Length = 207

 Score =  295 bits (756), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 131/208 (62%), Positives = 170/208 (81%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  K+D     + LVPMVVEQT RGER++DIYSRLLK+RI+F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--KQDQYAPNMSLVPMVVEQTARGERAFDIYSRLLKDRIIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMGS LL+
Sbjct: 59  AQMLFLEAENPEKDIHLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGSFLLA 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG +G RF LPN+R+++HQP GGF GQA+DI+ HAQ+I+K+K R+NE+  K+ G+  +++
Sbjct: 119 AGAEGKRFCLPNSRVMIHQPLGGFQGQATDIQIHAQEILKVKARMNELMAKHTGQPLDKI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SASEA D+G+VD +   R
Sbjct: 179 EEDTERDRFLSASEAVDYGLVDSIFTQR 206


>gi|242240292|ref|YP_002988473.1| ATP-dependent Clp protease proteolytic subunit ClpP [Dickeya
           dadantii Ech703]
 gi|242132349|gb|ACS86651.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dickeya
           dadantii Ech703]
          Length = 207

 Score =  295 bits (756), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 132/208 (63%), Positives = 172/208 (82%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  +K  +   + LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+ED+MA LI 
Sbjct: 1   MSYSGEQEK--QTPHMALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDYMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GGF GQA+DIE HA++I+K+K R+NE+  K+ G++ + +
Sbjct: 119 AGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKEILKVKARMNELMAKHTGQSLDII 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA EA ++G+VD VL  R
Sbjct: 179 ERDTERDRFLSAGEAVEYGLVDSVLTHR 206


>gi|317492909|ref|ZP_07951333.1| Clp protease [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919031|gb|EFV40366.1| Clp protease [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 206

 Score =  295 bits (756), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 133/208 (63%), Positives = 169/208 (81%), Gaps = 3/208 (1%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G   +      + LVPMVVEQT+RGERSYDI+SRLLKERI+F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG---ERDLAPHMALVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDHMANLIV 57

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 58  AQMLFLEAENPEKDIHLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLT 117

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GGF GQA+DIE HA++I+K+K R+NE+  K+ GK  EE+
Sbjct: 118 AGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKEILKVKARMNELMAKHSGKPLEEI 177

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA EA ++G+VD V+  R
Sbjct: 178 ERDTERDRFLSADEAVEYGLVDSVMTHR 205


>gi|315122830|ref|YP_004063319.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313496232|gb|ADR52831.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 216

 Score =  295 bits (756), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 179/216 (82%), Positives = 196/216 (90%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           M FE  A++   D  LGLVPMVVEQTNRGERSYDIYSRLLKERIVF+TGQIEDHMA LIC
Sbjct: 1   MIFEEYAREGFNDTSLGLVPMVVEQTNRGERSYDIYSRLLKERIVFITGQIEDHMAALIC 60

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP+ST C+GQAASMGSLLL+
Sbjct: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPVSTLCIGQAASMGSLLLA 120

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG+KGMRFALPNARI+LHQPSGGFSGQASDIERHA+DI+KIK RLN IYVK+CG+ YEEV
Sbjct: 121 AGKKGMRFALPNARIMLHQPSGGFSGQASDIERHARDIIKIKHRLNNIYVKHCGRVYEEV 180

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           E+TLDRD  MSA +A  WG++DKVLMSR+DIEE  K
Sbjct: 181 EQTLDRDCFMSAEDAHAWGLIDKVLMSRVDIEEGGK 216


>gi|28897691|ref|NP_797296.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|260898290|ref|ZP_05906786.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           parahaemolyticus Peru-466]
 gi|308094762|ref|ZP_05891792.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           parahaemolyticus AN-5034]
 gi|31340006|sp|Q87R80|CLPP_VIBPA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|28805904|dbj|BAC59180.1| ATP-dependent Clp protease, proteolytic subunit [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|308088425|gb|EFO38120.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           parahaemolyticus Peru-466]
 gi|308093191|gb|EFO42886.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           parahaemolyticus AN-5034]
          Length = 200

 Score =  295 bits (756), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 125/197 (63%), Positives = 159/197 (80%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
             +   LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ AQLLFLE+ENP
Sbjct: 2   SPIMDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENP 61

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+I LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+ G  G R+ LP
Sbjct: 62  DKDIFLYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAAGKRYVLP 121

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+R+++HQP GGF GQASDI+ HAQ+I+ IK++LN +  ++ G+  E +E+  DRD+ MS
Sbjct: 122 NSRVMIHQPLGGFQGQASDIQIHAQEILTIKQKLNNLLAEHTGQPLEVIERDTDRDNFMS 181

Query: 192 ASEACDWGVVDKVLMSR 208
           A +A ++G+VD VL  R
Sbjct: 182 AEQAVEYGIVDAVLSHR 198


>gi|239995517|ref|ZP_04716041.1| ATP-dependent Clp protease proteolytic subunit [Alteromonas
           macleodii ATCC 27126]
          Length = 209

 Score =  295 bits (755), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 129/202 (63%), Positives = 164/202 (81%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
              D    LVPMVVEQT++GERSYDIYSRLLKE ++F+ GQ+EDHMA LI AQ+LFLEAE
Sbjct: 4   TPFDPMNALVPMVVEQTSKGERSYDIYSRLLKENVIFLVGQVEDHMANLIVAQMLFLEAE 63

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP+K+I LYINSPGG VTAGMAIYDTM+FIKP +ST CMGQAASMG+ LLSAG KG R+ 
Sbjct: 64  NPEKDIFLYINSPGGSVTAGMAIYDTMKFIKPDVSTVCMGQAASMGAFLLSAGAKGKRYC 123

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPN+R+++HQP GGF GQASD E HA++I+ IK +LN +   + G+ YE+V +  DRD+ 
Sbjct: 124 LPNSRVMIHQPLGGFQGQASDFEIHAKEILSIKEKLNRLMADHTGQDYEKVARDTDRDNF 183

Query: 190 MSASEACDWGVVDKVLMSRIDI 211
           +SA+EA ++G+VD+VL +R D+
Sbjct: 184 LSATEAKEYGLVDQVLANRSDV 205


>gi|212636027|ref|YP_002312552.1| ATP-dependent Clp protease proteolytic subunit [Shewanella
           piezotolerans WP3]
 gi|226706473|sp|B8CRF7|CLPP_SHEPW RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|212557511|gb|ACJ29965.1| Peptidase S14, ClpP [Shewanella piezotolerans WP3]
          Length = 203

 Score =  295 bits (755), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 127/201 (63%), Positives = 158/201 (78%)

Query: 8   KKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
            K  E V   LVPMVVEQT +GERSYDIYSRLLKER++F+ GQ+E+HMA LI AQLLFLE
Sbjct: 2   HKAPESVLNALVPMVVEQTAKGERSYDIYSRLLKERVIFLVGQVEEHMANLIVAQLLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           +E+P K+I LYINSPGG VTAGMAIYDTMQFIKP +ST C+GQAASMG+ LL+ G +G R
Sbjct: 62  SESPDKDIYLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFLLAGGAEGKR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
             LPN+R+++HQP GGF GQASDI  HAQ+I+ IK +LN +  ++ G+  E +E+  DRD
Sbjct: 122 HCLPNSRVMIHQPLGGFQGQASDIAIHAQEILGIKNKLNTMLAEHTGQPIEVIERDTDRD 181

Query: 188 HIMSASEACDWGVVDKVLMSR 208
           + MSA EA ++G+VD VL  R
Sbjct: 182 NFMSADEAAEYGLVDSVLAKR 202


>gi|91787906|ref|YP_548858.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Polaromonas
           sp. JS666]
 gi|91697131|gb|ABE43960.1| ATP-dependent Clp protease proteolytic subunit ClpP [Polaromonas
           sp. JS666]
          Length = 218

 Score =  295 bits (755), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 121/207 (58%), Positives = 159/207 (76%)

Query: 3   FEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQ 62
           + G      +   LG+VPMV+EQ+ RGERSYDIYSRLLKER++F+ G + D  A L+ AQ
Sbjct: 12  YAGPQAGAQDAQGLGMVPMVIEQSGRGERSYDIYSRLLKERVIFLVGPVNDQTANLVVAQ 71

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           LLFLE+ENP K+IS YINSPGG VTAGMAIYDTMQFIKP +ST C+G AASMG+ LLSAG
Sbjct: 72  LLFLESENPDKDISFYINSPGGSVTAGMAIYDTMQFIKPDVSTLCVGMAASMGAFLLSAG 131

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
            KG RF+LPN+R+++HQPSGG  GQA+DIE HA+DI+K + +LN I   N G+  E++E+
Sbjct: 132 AKGKRFSLPNSRVMIHQPSGGAQGQATDIEIHARDILKTRDQLNRILAANTGQPIEKIER 191

Query: 183 TLDRDHIMSASEACDWGVVDKVLMSRI 209
             +RD+ + A +A ++G+VD+V+  R 
Sbjct: 192 DTERDYFLFAEDAKEYGLVDQVISRRP 218


>gi|23014984|ref|ZP_00054776.1| COG0740: Protease subunit of ATP-dependent Clp proteases
           [Magnetospirillum magnetotacticum MS-1]
          Length = 213

 Score =  295 bits (755), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 134/211 (63%), Positives = 175/211 (82%), Gaps = 1/211 (0%)

Query: 6   CAKKDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLL 64
             ++D  DV++  LVPMVVEQTNRGERSYDIYSRLLKERIVF+TGQ+ D +A+LICAQLL
Sbjct: 1   MRERDPIDVYMNTLVPMVVEQTNRGERSYDIYSRLLKERIVFLTGQVYDEVASLICAQLL 60

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           FLE+ENP K+IS YINSPGGVVT+G+AIYDTMQ+I+P +ST C+GQAASMGSLL++AGEK
Sbjct: 61  FLESENPSKDISFYINSPGGVVTSGLAIYDTMQYIRPAVSTLCIGQAASMGSLLMTAGEK 120

Query: 125 GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
           G RF+LPN+RI++HQPSGG  GQA+DIE  A++I+ ++ RLN IYV + G+  E +EK +
Sbjct: 121 GKRFSLPNSRIMVHQPSGGAQGQATDIEIQAREILALRARLNNIYVDHTGQPLEVIEKVM 180

Query: 185 DRDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
           +RD  M+A EA ++G++D+V+  R   E+ S
Sbjct: 181 ERDKFMTAEEAKEFGLIDEVVNKRPVAEDDS 211


>gi|221068424|ref|ZP_03544529.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Comamonas
           testosteroni KF-1]
 gi|220713447|gb|EED68815.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Comamonas
           testosteroni KF-1]
          Length = 202

 Score =  295 bits (755), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 117/193 (60%), Positives = 155/193 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG+VPMV+EQ+ RGERSYDIYSRLLKER++F+ G++ D  A L+ AQLLFLE+ENP K+I
Sbjct: 9   LGMVPMVIEQSGRGERSYDIYSRLLKERVIFLVGEVNDQTANLVVAQLLFLESENPDKDI 68

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S YINSPGG VTAGMAI+DTM FIKP +ST C G AASMG+ LLSAG KG R+ALPNA++
Sbjct: 69  SFYINSPGGSVTAGMAIFDTMNFIKPDVSTLCTGMAASMGAFLLSAGAKGKRYALPNAQV 128

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE HA++I+K + RLN+I  +  G+  E+++   +RD+ +SA EA
Sbjct: 129 MIHQPLGGARGQATEIEIHAREILKTRERLNKILAERTGQPLEKIQNDTERDYFLSADEA 188

Query: 196 CDWGVVDKVLMSR 208
            D+G+VD+V+  R
Sbjct: 189 KDYGLVDQVISKR 201


>gi|120599414|ref|YP_963988.1| ATP-dependent Clp protease proteolytic subunit [Shewanella sp.
           W3-18-1]
 gi|146292590|ref|YP_001183014.1| ATP-dependent Clp protease proteolytic subunit [Shewanella
           putrefaciens CN-32]
 gi|166214710|sp|A4Y5I2|CLPP_SHEPC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166214712|sp|A1RL89|CLPP_SHESW RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|120559507|gb|ABM25434.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella sp.
           W3-18-1]
 gi|145564280|gb|ABP75215.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
           putrefaciens CN-32]
 gi|319425892|gb|ADV53966.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
           putrefaciens 200]
          Length = 202

 Score =  295 bits (755), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 126/199 (63%), Positives = 162/199 (81%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           ++ D+   LVPMV+EQT +GERSYDIYSRLLKERI+F+ GQ+E+HMA LI AQLLFLE+E
Sbjct: 3   NASDIQNALVPMVIEQTAKGERSYDIYSRLLKERIIFLVGQVEEHMANLIVAQLLFLESE 62

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           +P K+I LYINSPGG VTAGMAIYDTMQFIKP +ST C+GQAASMG+ LL+ GEKG RF 
Sbjct: 63  SPDKDIFLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFLLAGGEKGKRFC 122

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPN+R+++HQP GGF GQASDI  HAQ+I+ IK +LN +  ++ G+  E +E+  DRD+ 
Sbjct: 123 LPNSRVMIHQPLGGFQGQASDIAIHAQEILGIKHKLNLMLAEHTGQPLEVIERDTDRDNF 182

Query: 190 MSASEACDWGVVDKVLMSR 208
           MSA++A ++G+VD V+  R
Sbjct: 183 MSATQAVEYGLVDSVMTKR 201


>gi|260222837|emb|CBA32804.1| ATP-dependent Clp protease proteolytic subunit [Curvibacter
           putative symbiont of Hydra magnipapillata]
          Length = 220

 Score =  295 bits (755), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 116/209 (55%), Positives = 159/209 (76%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           M+ +       E   LG+VPMV+EQ+ RGERSYDIYSRLLKER++F+ G + D  A L+ 
Sbjct: 12  MNVKYGMSGAMETQALGMVPMVIEQSGRGERSYDIYSRLLKERVIFLVGPVNDQTANLVV 71

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE+ENP K+IS YINSPGG V+AGMAIYDTM FIKP +ST C G AASMG+ LL+
Sbjct: 72  AQLLFLESENPDKDISFYINSPGGSVSAGMAIYDTMNFIKPDVSTLCTGMAASMGAFLLA 131

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF+LPN+++++HQP GG  GQA++IE HA++I+K + +LN+I  +  G+  E++
Sbjct: 132 AGAKGKRFSLPNSKVMIHQPLGGTQGQATEIEIHAREILKTREQLNKILAERTGQPLEKI 191

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           E+  +RD+ +SA EA ++G+VD+V+  R 
Sbjct: 192 ERDTERDYYLSADEAKEYGLVDQVIAKRP 220


>gi|157962502|ref|YP_001502536.1| ATP-dependent Clp protease proteolytic subunit [Shewanella pealeana
           ATCC 700345]
 gi|189082466|sp|A8H614|CLPP_SHEPA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|157847502|gb|ABV88001.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
           pealeana ATCC 700345]
          Length = 203

 Score =  295 bits (755), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 126/201 (62%), Positives = 159/201 (79%)

Query: 8   KKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
            K  E V   LVPMVVEQT +GERSYDIYSRLLKER++F+ GQ+E+HMA LI AQLLFLE
Sbjct: 2   HKAPESVLNALVPMVVEQTAKGERSYDIYSRLLKERVIFLVGQVEEHMANLIVAQLLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           +E+P K+I LYINSPGG VTAGMAIYDTMQFIKP +ST C+GQAASMG+ LL+ G +G R
Sbjct: 62  SESPDKDIYLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFLLAGGAEGKR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
             LPN+R+++HQP GGF GQASDI  HAQ+I+ IK +LN +  ++ G+  E +E+  DRD
Sbjct: 122 HCLPNSRVMIHQPLGGFQGQASDIAIHAQEILGIKNKLNTMLAEHTGQPLEVIERDTDRD 181

Query: 188 HIMSASEACDWGVVDKVLMSR 208
           + MSA+EA ++G+VD V+  R
Sbjct: 182 NFMSATEAAEYGLVDSVIAKR 202


>gi|312882507|ref|ZP_07742248.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309369907|gb|EFP97418.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 208

 Score =  294 bits (754), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 126/210 (60%), Positives = 165/210 (78%), Gaps = 2/210 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS++   K     +   LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ 
Sbjct: 1   MSYQ--EKNAMSPILDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE+ENP K+I LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLA 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
            G  G R+ LPN+R+++HQP GGF GQASDI+ HAQ+I+ IK++LN +  ++ G+  + +
Sbjct: 119 GGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKKKLNTLLAEHTGQPLDVI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           E+  DRD+ MSA +A ++G+VD +L  R +
Sbjct: 179 ERDTDRDNFMSADQAVEYGLVDSMLTHRSE 208


>gi|264677387|ref|YP_003277293.1| ATP-dependent Clp protease proteolytic subunit [Comamonas
           testosteroni CNB-2]
 gi|299533085|ref|ZP_07046471.1| ATP-dependent Clp protease, proteolytic subunit [Comamonas
           testosteroni S44]
 gi|262207899|gb|ACY31997.1| ATP-dependent Clp protease, proteolytic subunit [Comamonas
           testosteroni CNB-2]
 gi|298718970|gb|EFI59941.1| ATP-dependent Clp protease, proteolytic subunit [Comamonas
           testosteroni S44]
          Length = 202

 Score =  294 bits (754), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 116/193 (60%), Positives = 155/193 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG+VPMV+EQ+ RGERSYDIYSRLLKER++F+ G++ D  A L+ AQLLFLE+ENP K+I
Sbjct: 9   LGMVPMVIEQSGRGERSYDIYSRLLKERVIFLVGEVNDQTANLVVAQLLFLESENPDKDI 68

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S YINSPGG VTAGMAI+DTM FIKP +ST C G AASMG+ LLSAG KG R+ALPNA++
Sbjct: 69  SFYINSPGGSVTAGMAIFDTMNFIKPDVSTLCTGMAASMGAFLLSAGAKGKRYALPNAQV 128

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE HA++I+K + RLN+I  +  G+  E+++   +RD+ +SA EA
Sbjct: 129 MIHQPLGGARGQATEIEIHAREIIKTRERLNKILAERTGQPLEKIQNDTERDYFLSADEA 188

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD+V+  R
Sbjct: 189 KEYGLVDQVISKR 201


>gi|91793847|ref|YP_563498.1| ATP-dependent Clp protease proteolytic subunit [Shewanella
           denitrificans OS217]
 gi|123356647|sp|Q12LA1|CLPP_SHEDO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|91715849|gb|ABE55775.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella
           denitrificans OS217]
          Length = 203

 Score =  294 bits (754), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 128/201 (63%), Positives = 161/201 (80%)

Query: 8   KKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
            K  E V   LVPMVVEQT +GERSYDIYSRLLKER++F+ GQ+E+HMA LI AQLLFLE
Sbjct: 2   HKAPESVLNALVPMVVEQTAKGERSYDIYSRLLKERVIFLVGQVEEHMANLIVAQLLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           +E+P K+I LYINSPGG VTAGMAIYDTMQFIKP +ST C+GQAASMG+ LL+ G KG R
Sbjct: 62  SESPDKDIYLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFLLAGGAKGKR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
             LPN+R+++HQP GGF GQASDI  HAQ+I+ IK +LN++  ++ G+  E +E+  DRD
Sbjct: 122 HCLPNSRVMIHQPLGGFQGQASDIAIHAQEILGIKNKLNQMLAEHTGQPLEVIERDTDRD 181

Query: 188 HIMSASEACDWGVVDKVLMSR 208
           + MSA++A D+G+VD +L SR
Sbjct: 182 NFMSATQAMDYGLVDSLLTSR 202


>gi|312880128|ref|ZP_07739928.1| ATP-dependent Clp protease proteolytic subunit ClpP [Aminomonas
           paucivorans DSM 12260]
 gi|310783419|gb|EFQ23817.1| ATP-dependent Clp protease proteolytic subunit ClpP [Aminomonas
           paucivorans DSM 12260]
          Length = 201

 Score =  294 bits (754), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 120/200 (60%), Positives = 155/200 (77%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D       LVP VVEQT RGER+YDIYSRLLK+RIVF+  +IE+HMA L+ AQLLFLE+
Sbjct: 2   RDVPASRAALVPYVVEQTGRGERTYDIYSRLLKDRIVFLGEEIEEHMANLVVAQLLFLES 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           E+P+K++ LYINSPGGVVTAGMAIYDTMQ+IK P+ST C GQAASM ++LL+ G KG R 
Sbjct: 62  EDPEKDVYLYINSPGGVVTAGMAIYDTMQYIKCPVSTICTGQAASMAAVLLAGGAKGKRI 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           ALP+ARI++HQP GG  GQA+DIE  A++I++++  LN+I V + G+  E ++   DRD 
Sbjct: 122 ALPHARIMIHQPLGGAQGQATDIEIQAKEILRLREVLNQILVDHTGQPVERIKADTDRDF 181

Query: 189 IMSASEACDWGVVDKVLMSR 208
            MSA EA  +G+VDKV+  R
Sbjct: 182 FMSAPEAVAYGLVDKVIDKR 201


>gi|160898086|ref|YP_001563668.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Delftia
           acidovorans SPH-1]
 gi|160363670|gb|ABX35283.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Delftia
           acidovorans SPH-1]
          Length = 202

 Score =  294 bits (754), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 113/197 (57%), Positives = 155/197 (78%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E   LG++PMV+EQ+ RGERSYDIYSRLLK+R++F+ G + D  A L+ AQLLFLE+ENP
Sbjct: 5   ETQGLGMIPMVIEQSGRGERSYDIYSRLLKDRVIFLVGPVNDQTANLVVAQLLFLESENP 64

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+IS YINSPGG V+AG+AI+DTM FIKP +ST C G AASMG+ LL+AG KG RFALP
Sbjct: 65  DKDISFYINSPGGSVSAGLAIFDTMNFIKPDVSTLCTGIAASMGAFLLAAGTKGKRFALP 124

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+++++HQP GG  GQA++IE HA++I+K + RLN+I  +  G+  E+++   +RD+ +S
Sbjct: 125 NSQVMIHQPLGGMQGQATEIEIHAREILKTRERLNKILAERTGQPLEKIQHDTERDYFLS 184

Query: 192 ASEACDWGVVDKVLMSR 208
           A EA D+G+VD+V+  R
Sbjct: 185 AEEAKDYGLVDQVINKR 201


>gi|71281884|ref|YP_270452.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Colwellia
           psychrerythraea 34H]
 gi|110816457|sp|Q47XL8|CLPP_COLP3 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|71147624|gb|AAZ28097.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Colwellia
           psychrerythraea 34H]
          Length = 220

 Score =  294 bits (754), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 126/200 (63%), Positives = 161/200 (80%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
           +  +   LVPMVVEQT +GERSYDIYSRLLKER++F+ GQ+EDHMA LI AQLLFLE+E+
Sbjct: 20  ATGIESALVPMVVEQTAKGERSYDIYSRLLKERVIFLCGQVEDHMANLIIAQLLFLESES 79

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
           P K+I LYINSPGG VTAGMAIYDTM+FIKP IST C+GQAASMG+ LLS GEKG R+ L
Sbjct: 80  PDKDIYLYINSPGGSVTAGMAIYDTMKFIKPNISTVCIGQAASMGAFLLSGGEKGKRYCL 139

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           PNAR+++HQP GGF GQASD E HA++I+ IK +LN++  ++ G+T ++V +  DRD+ +
Sbjct: 140 PNARVMIHQPLGGFQGQASDFEIHAKEILFIKDKLNKLMAEHTGQTLDKVSQDTDRDNFL 199

Query: 191 SASEACDWGVVDKVLMSRID 210
           SA  A ++G+VD +L  R D
Sbjct: 200 SAEAAVEYGLVDSILEQRND 219


>gi|145589117|ref|YP_001155714.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145047523|gb|ABP34150.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 209

 Score =  294 bits (754), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 120/209 (57%), Positives = 160/209 (76%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           M+      ++ E   LGLVPMV+E + RGER+YDIYSRLL+ER+VF+ G++ D  A L+ 
Sbjct: 1   MNQNHFQSENLEPKGLGLVPMVIETSGRGERAYDIYSRLLRERVVFLVGEVNDQTANLVI 60

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE+ENP K+ISLYINSPGG V+AG+AIYDTMQFIKP +ST CMG AASMG+ LL 
Sbjct: 61  AQLLFLESENPDKDISLYINSPGGSVSAGLAIYDTMQFIKPHVSTLCMGMAASMGAFLLC 120

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AGEKG R+ALPN+R+++HQP GG  GQASDIE  A++I+ ++ RLN+I     G++ + +
Sbjct: 121 AGEKGKRYALPNSRVMIHQPLGGARGQASDIEIQAREILYLRERLNKILADRTGQSIDTI 180

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRI 209
            K  DRD+ MSA +A ++G++DKV+  R 
Sbjct: 181 AKDTDRDNFMSAEQAREYGLIDKVIEKRP 209


>gi|262276278|ref|ZP_06054087.1| ATP-dependent Clp protease proteolytic subunit [Grimontia hollisae
           CIP 101886]
 gi|262220086|gb|EEY71402.1| ATP-dependent Clp protease proteolytic subunit [Grimontia hollisae
           CIP 101886]
          Length = 207

 Score =  294 bits (754), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 129/208 (62%), Positives = 164/208 (78%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MSF+   K     +   LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ 
Sbjct: 1   MSFQ--EKNGMPSIMDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE+ENP K+I LYINSPGG VTAGM+IYDTMQ+IKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQYIKPDVSTVCMGQACSMGAFLLA 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
            G KG R+ LPN+R+++HQP GGF GQASDI+ HAQ+I+ IK RLN +  ++ G+  E +
Sbjct: 119 GGAKGKRYCLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKHRLNTLLAEHTGQPLEVI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  DRD+ M+A +A ++G+VD VL  R
Sbjct: 179 ERDTDRDNFMAAQDAVNYGLVDAVLNKR 206


>gi|167624686|ref|YP_001674980.1| ATP-dependent Clp protease proteolytic subunit [Shewanella
           halifaxensis HAW-EB4]
 gi|189082465|sp|B0TLU9|CLPP_SHEHH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|167354708|gb|ABZ77321.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
           halifaxensis HAW-EB4]
          Length = 203

 Score =  294 bits (754), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 126/201 (62%), Positives = 159/201 (79%)

Query: 8   KKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
            K  E V   LVPMVVEQT +GERSYDIYSRLLKER++F+ GQ+E+HMA LI AQLLFLE
Sbjct: 2   HKAPESVLNALVPMVVEQTAKGERSYDIYSRLLKERVIFLVGQVEEHMANLIVAQLLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           +E+P K+I LYINSPGG VTAGMAIYDTMQFIKP +ST C+GQAASMG+ LL+ G +G R
Sbjct: 62  SESPDKDIYLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFLLAGGAEGKR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
             LPN+R+++HQP GGF GQASDI  HAQ+I+ IK +LN +  ++ G+  E +E+  DRD
Sbjct: 122 HCLPNSRVMIHQPLGGFQGQASDIAIHAQEILGIKNKLNTMLAEHTGQPLEVIERDTDRD 181

Query: 188 HIMSASEACDWGVVDKVLMSR 208
           + MSA+EA ++G+VD V+  R
Sbjct: 182 NFMSATEAAEYGLVDSVIAKR 202


>gi|313887837|ref|ZP_07821517.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846180|gb|EFR33561.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 194

 Score =  294 bits (753), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 121/194 (62%), Positives = 159/194 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQTNRGERSYDIYSRLLK+RI+F++G++ D MA LI AQLLFLEAE+P K+I
Sbjct: 1   MALVPMVVEQTNRGERSYDIYSRLLKDRIIFLSGEVNDTMADLIVAQLLFLEAEDPNKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG V+AG AIYDTM +IKP +ST C+G AASMG+ LL++G KG RFALPN+ I
Sbjct: 61  QLYINSPGGSVSAGFAIYDTMNYIKPDVSTICIGMAASMGAFLLASGAKGKRFALPNSDI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQASDI+ +A+ I+KI+ +LNEI  +  G+  E++EK  DRD+ +++ EA
Sbjct: 121 MIHQPSGGAQGQASDIQINAEKILKIRHKLNEILAERTGQDLEKIEKDTDRDYWLNSQEA 180

Query: 196 CDWGVVDKVLMSRI 209
            D+G++DKV+  R+
Sbjct: 181 KDYGLIDKVIEKRV 194


>gi|114048055|ref|YP_738605.1| ATP-dependent Clp protease proteolytic subunit [Shewanella sp.
           MR-7]
 gi|123326387|sp|Q0HTK7|CLPP_SHESR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|113889497|gb|ABI43548.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella sp.
           MR-7]
          Length = 202

 Score =  294 bits (753), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 126/199 (63%), Positives = 162/199 (81%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           ++ D+   LVPMV+EQT +GERS+DIYSRLLKERI+F+ GQ+E+HMA LI AQLLFLE+E
Sbjct: 3   NASDIQSALVPMVIEQTAKGERSFDIYSRLLKERIIFLVGQVEEHMANLIVAQLLFLESE 62

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           +P K+I LYINSPGG VTAGMAIYDTMQFIKP +ST C+GQAASMG+ LL+ GEKG RF 
Sbjct: 63  SPDKDIFLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFLLAGGEKGKRFC 122

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPN+R+++HQP GGF GQASDI  HAQ+I+ IK +LN +  ++ G+  E +E+  DRD+ 
Sbjct: 123 LPNSRVMIHQPLGGFQGQASDIAIHAQEILGIKHKLNLMLAEHTGQPLEVIERDTDRDNF 182

Query: 190 MSASEACDWGVVDKVLMSR 208
           MSA++A D+G+VD V+  R
Sbjct: 183 MSATQAVDYGLVDAVMTKR 201


>gi|119774361|ref|YP_927101.1| ATP-dependent Clp protease proteolytic subunit [Shewanella
           amazonensis SB2B]
 gi|171704645|sp|A1S4X5|CLPP_SHEAM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|119766861|gb|ABL99431.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella
           amazonensis SB2B]
          Length = 202

 Score =  294 bits (753), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 130/198 (65%), Positives = 161/198 (81%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
            E VF  LVPMVVEQT +GERSYDIYSRLLKER++F+ GQ+E+HMA LI AQLLFLE+EN
Sbjct: 5   PESVFNALVPMVVEQTAKGERSYDIYSRLLKERVIFLVGQVEEHMANLIVAQLLFLESEN 64

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
           P KEI LYINSPGG VTAGMAIYDTMQFIKP +ST C+GQA SMG+ LL+ GEKGMR  L
Sbjct: 65  PDKEIYLYINSPGGSVTAGMAIYDTMQFIKPKVSTVCIGQACSMGAFLLAGGEKGMRHCL 124

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           PN+R+++HQP GGF GQASDI  HAQ+I+ IK +LN++   + G+  E +E+  DRD+ M
Sbjct: 125 PNSRVMIHQPLGGFQGQASDIAIHAQEILGIKHKLNQMLSHHTGQPMEVIERDTDRDNFM 184

Query: 191 SASEACDWGVVDKVLMSR 208
           SA++A ++G++D VL SR
Sbjct: 185 SATQAVEYGLIDSVLTSR 202


>gi|163857103|ref|YP_001631401.1| ATP-dependent Clp protease proteolytic subunit [Bordetella petrii
           DSM 12804]
 gi|226706441|sp|A9IR54|CLPP_BORPD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|163260831|emb|CAP43133.1| ATP-dependent Clp protease proteolytic subunit [Bordetella petrii]
          Length = 217

 Score =  294 bits (753), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 119/195 (61%), Positives = 154/195 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG +PMV+EQ+ RGER+YDIYSRLL+ER++F+ G + D+ A LI AQLLFLE+ENP K+I
Sbjct: 22  LGYIPMVIEQSGRGERAYDIYSRLLRERLIFLVGPVNDNTANLIVAQLLFLESENPDKDI 81

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG V AGMAIYDTMQF+KP +ST C G AASMG+ LL+AG+KG RF LPN+RI
Sbjct: 82  SLYINSPGGSVYAGMAIYDTMQFVKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRI 141

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQASDI+  A++I+ ++ RLN I  +N G+  E +    +RD+ MSA +A
Sbjct: 142 MIHQPSGGAQGQASDIQIQAREILDLRERLNRILAENTGQPVERIAVDTERDNFMSAEDA 201

Query: 196 CDWGVVDKVLMSRID 210
             +G+VDKVL SR +
Sbjct: 202 VSYGLVDKVLASRSE 216


>gi|238783609|ref|ZP_04627630.1| ATP-dependent Clp protease proteolytic subunit [Yersinia bercovieri
           ATCC 43970]
 gi|238715487|gb|EEQ07478.1| ATP-dependent Clp protease proteolytic subunit [Yersinia bercovieri
           ATCC 43970]
          Length = 207

 Score =  294 bits (753), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 133/208 (63%), Positives = 169/208 (81%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D     + LVPMVVEQT+RGERSYDI+SRLLKERI+F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--ERDQFAPNMALVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDHMANLIT 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIFLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GGF GQA+DIE HA++I+K+K R+NE+   + GK+ EE+
Sbjct: 119 AGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAREILKVKSRMNELMALHTGKSLEEI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA EA  +G+VD V   R
Sbjct: 179 ERDTERDRFLSAEEAVGYGLVDSVFTRR 206


>gi|121605848|ref|YP_983177.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Polaromonas
           naphthalenivorans CJ2]
 gi|120594817|gb|ABM38256.1| ATP-dependent Clp protease proteolytic subunit ClpP [Polaromonas
           naphthalenivorans CJ2]
          Length = 216

 Score =  294 bits (752), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 125/207 (60%), Positives = 158/207 (76%)

Query: 3   FEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQ 62
           +        E   LG+VPMV+EQ+ RGERSYDIYSRLLKER++F+ G + D  A L+ AQ
Sbjct: 10  YNSPQAASQEIQGLGMVPMVIEQSGRGERSYDIYSRLLKERVIFLVGPVNDQTANLVVAQ 69

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           LLFLE+ENP K+IS YINSPGG VTAGMAIYDTMQFIKP +ST C+G AASMG+ LLS+G
Sbjct: 70  LLFLESENPDKDISFYINSPGGSVTAGMAIYDTMQFIKPDVSTLCVGMAASMGAFLLSSG 129

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
            KG RF+LPN+R+++HQPSGG  GQASDIE HA+DI+K + +LN I   N G+T E++E+
Sbjct: 130 TKGKRFSLPNSRVMIHQPSGGAQGQASDIEIHARDILKTRDQLNRILAHNTGQTVEKIER 189

Query: 183 TLDRDHIMSASEACDWGVVDKVLMSRI 209
             +RD+ M A EA  +GVVD+V+  R 
Sbjct: 190 DTERDYFMFADEAKAYGVVDQVISKRP 216


>gi|117921102|ref|YP_870294.1| ATP-dependent Clp protease proteolytic subunit [Shewanella sp.
           ANA-3]
 gi|166214711|sp|A0KYL9|CLPP_SHESA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|117613434|gb|ABK48888.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella sp.
           ANA-3]
          Length = 202

 Score =  294 bits (752), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 125/199 (62%), Positives = 162/199 (81%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           ++ D+   LVPMV+EQT +GERS+DIYSRLLKERI+F+ GQ+E+HMA LI AQLLFLE+E
Sbjct: 3   NASDIQSALVPMVIEQTAKGERSFDIYSRLLKERIIFLVGQVEEHMANLIVAQLLFLESE 62

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           +P K+I LYINSPGG VTAGMAIYDTMQFIKP +ST C+GQAASMG+ LL+ GEKG RF 
Sbjct: 63  SPDKDIFLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFLLAGGEKGKRFC 122

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPN+R+++HQP GGF GQASDI  HAQ+I+ IK +LN +  ++ G+  E +E+  DRD+ 
Sbjct: 123 LPNSRVMIHQPLGGFQGQASDIAIHAQEILGIKHKLNLMLSEHTGQPLEVIERDTDRDNF 182

Query: 190 MSASEACDWGVVDKVLMSR 208
           MSA++A ++G+VD V+  R
Sbjct: 183 MSATQAVEYGLVDAVMTKR 201


>gi|114777030|ref|ZP_01452050.1| ATP-dependent Clp protease proteolytic subunit [Mariprofundus
           ferrooxydans PV-1]
 gi|114552551|gb|EAU55011.1| ATP-dependent Clp protease proteolytic subunit [Mariprofundus
           ferrooxydans PV-1]
          Length = 207

 Score =  294 bits (752), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 119/195 (61%), Positives = 162/195 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP VVEQT+RGER+YDI+SRLLKERIVF+ GQ++DH A LI AQLLFLE+E P K+I
Sbjct: 1   MNLVPTVVEQTSRGERAYDIFSRLLKERIVFLNGQVDDHTANLIIAQLLFLESEGPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVT+G+AIYDTMQ+I+  +ST C+GQAASMG+ LL++G  G RF+LPN+RI
Sbjct: 61  YMYINSPGGVVTSGLAIYDTMQYIRCDVSTLCIGQAASMGAHLLASGAPGKRFSLPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DIE HA++I+ +K RLNE+  K+ G+  E++   ++RD+ ++A +A
Sbjct: 121 MIHQPLGGFQGQATDIEIHAREILSLKNRLNEMMAKHTGQPIEKLADDVERDYFLTADQA 180

Query: 196 CDWGVVDKVLMSRID 210
           C++G+VDKVL SR +
Sbjct: 181 CEYGLVDKVLSSRAE 195


>gi|37527729|ref|NP_931074.1| ATP-dependent Clp protease proteolytic subunit [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|60389709|sp|Q7N0L3|CLPP_PHOLL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|36787165|emb|CAE16241.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease,
           heat shock protein F21.5 (Endopeptidase Clp)
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 207

 Score =  294 bits (752), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 133/208 (63%), Positives = 167/208 (80%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+    K+D     + LVPMVVEQT RGERSYDIYSRLLKERI+F+TGQ+EDHMA L+ 
Sbjct: 1   MSYS--DKRDQYAPHMALVPMVVEQTTRGERSYDIYSRLLKERIIFLTGQVEDHMANLVA 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIFLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG R  LPN+R+++HQP GGF GQA+DIE HAQ+I+K+K R+NE+  K+ G+  EE+
Sbjct: 119 AGAKGKRICLPNSRVMIHQPLGGFQGQATDIEIHAQEILKVKSRMNELMAKHTGRPIEEI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
            K  +RD  +SA EA ++G+VDK+   R
Sbjct: 179 AKDTERDRFLSADEAVEYGLVDKIFTHR 206


>gi|225850859|ref|YP_002731093.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Persephonella
           marina EX-H1]
 gi|225644930|gb|ACO03116.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Persephonella
           marina EX-H1]
          Length = 202

 Score =  293 bits (751), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 117/201 (58%), Positives = 163/201 (81%)

Query: 8   KKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
            KD + +   LVP+V+EQT RGER+YDIYSRLLK+RI+ +   I+DH+A LI AQLLFLE
Sbjct: 2   SKDLDSIVSQLVPIVIEQTPRGERAYDIYSRLLKDRIIMLGFPIDDHIANLIIAQLLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           +E+P+K+I +YINSPGGVVT+G+AIYDTM++IKP + T CMGQAASMG+ LLSAG KG R
Sbjct: 62  SEDPEKDIYMYINSPGGVVTSGLAIYDTMRYIKPDVVTICMGQAASMGAFLLSAGAKGKR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           +ALP++RI++HQP GGF GQA+DIE HA++I+++K+ LNE   ++ G+  E++E+  +RD
Sbjct: 122 YALPSSRIMIHQPLGGFQGQATDIEIHAKEILRLKKYLNERLAEHTGQPLEKIERDTERD 181

Query: 188 HIMSASEACDWGVVDKVLMSR 208
             MSA +A ++G++DKV+  R
Sbjct: 182 FFMSAHDAVEYGLIDKVIEKR 202


>gi|253990891|ref|YP_003042247.1| ATP-dependent Clp protease proteolytic subunit [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253782341|emb|CAQ85505.1| ATP-dependent proteolytic subunit of clpA-ClpP serine protease,
           heat shock protein F21.5 [Photorhabdus asymbiotica]
          Length = 207

 Score =  293 bits (751), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 135/208 (64%), Positives = 170/208 (81%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+    K+D     + LVPMV+EQT RGERS+DIYSRLLKERI+F+TGQ+EDHMA LI 
Sbjct: 1   MSYS--DKRDQYVPHMALVPMVIEQTARGERSFDIYSRLLKERIIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIFLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG +G RF LPN+R+++HQP GGF GQASDIE HAQ+I+K+K R+N +  K+ GK+ EE+
Sbjct: 119 AGAEGKRFCLPNSRVMIHQPLGGFQGQASDIEIHAQEILKVKGRMNSLMAKHTGKSLEEI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           EK  +RD  +SASEA ++G+VDK+   R
Sbjct: 179 EKDTERDRFLSASEAVEYGLVDKIFTHR 206


>gi|144899460|emb|CAM76324.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 214

 Score =  293 bits (751), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 130/209 (62%), Positives = 177/209 (84%), Gaps = 1/209 (0%)

Query: 6   CAKKDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLL 64
             ++D  D+++  LVPMVVEQTNRGERSYDIYSRLLKERIVF+TGQ+ D ++TLICAQLL
Sbjct: 1   MRERDPIDLYMNTLVPMVVEQTNRGERSYDIYSRLLKERIVFLTGQVYDEVSTLICAQLL 60

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           FLE+ENP K+I+ YINSPGGVVT+G+A+YDTMQ+I+P +ST C+GQAASMGSLLL+AG K
Sbjct: 61  FLESENPNKDIAFYINSPGGVVTSGLAMYDTMQYIRPSVSTVCLGQAASMGSLLLTAGAK 120

Query: 125 GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
           G RF+LPNAR+++HQPSGG  GQA+DIE  A++I+ ++ RLN +YV++ G+T E +E+ +
Sbjct: 121 GKRFSLPNARVMIHQPSGGAQGQATDIEIQAREILALRARLNNMYVQHTGQTLEVIERAM 180

Query: 185 DRDHIMSASEACDWGVVDKVLMSRIDIEE 213
           +RD  M+A EA ++G++D+V+ +R  +EE
Sbjct: 181 ERDKYMTADEAKEFGLIDEVVSNRPTLEE 209


>gi|186475776|ref|YP_001857246.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           phymatum STM815]
 gi|184192235|gb|ACC70200.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           phymatum STM815]
          Length = 219

 Score =  293 bits (751), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 123/209 (58%), Positives = 159/209 (76%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           ++ +    +D E   LGLVP+VVE + RGERSYDIYSRLLKER+VF+ G++ D  A L+ 
Sbjct: 11  LTSQSSRDRDLEAQALGLVPIVVETSGRGERSYDIYSRLLKERVVFLVGEVNDQTANLVI 70

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE+ENP K+IS YINSPGG V+AGMAIYDTMQFIKP +ST CMG AASMG+ LL+
Sbjct: 71  AQLLFLESENPDKDISFYINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLA 130

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RFALPNAR+++HQP GG  GQASDIE  A++I+ +K RLN++   + G+  E +
Sbjct: 131 AGAKGKRFALPNARVMIHQPLGGARGQASDIEIQAREILYLKERLNQLLSHHTGQPVERI 190

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           ++  DRD+ MS  +A  +G+VD+VL  R 
Sbjct: 191 QRDTDRDNFMSGDDAQAYGLVDQVLHKRP 219


>gi|226939792|ref|YP_002794865.1| Protease subunit of ATP-dependent Clp protease [Laribacter
           hongkongensis HLHK9]
 gi|254763792|sp|C1D539|CLPP_LARHH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226714718|gb|ACO73856.1| Protease subunit of ATP-dependent Clp protease [Laribacter
           hongkongensis HLHK9]
          Length = 212

 Score =  293 bits (751), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 123/201 (61%), Positives = 162/201 (80%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
                LGLVPMVVEQ+ RGER+YDIYSRLLKERIVF+ G + D  A L+ AQ+LFLE+EN
Sbjct: 12  PAPQALGLVPMVVEQSGRGERAYDIYSRLLKERIVFMVGPVTDETANLVVAQMLFLESEN 71

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
           P K+I LYINSPGG VTAG++IYDTM FIKP +ST C+GQAASMG+ LLSAG KG RFAL
Sbjct: 72  PDKDIHLYINSPGGSVTAGLSIYDTMNFIKPSVSTLCIGQAASMGAFLLSAGAKGKRFAL 131

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           PN+R+++HQP GGF GQASD E HA++I+ +KR+LNE+   +CG+  E++E+  DRD+ M
Sbjct: 132 PNSRVMIHQPLGGFQGQASDFEIHAREILTLKRKLNELMAAHCGRPLEDLERDTDRDNFM 191

Query: 191 SASEACDWGVVDKVLMSRIDI 211
           +A++A ++G++D+VL +R  +
Sbjct: 192 NAAQALEYGLIDQVLENRAAV 212


>gi|114563762|ref|YP_751275.1| ATP-dependent Clp protease proteolytic subunit [Shewanella
           frigidimarina NCIMB 400]
 gi|122299288|sp|Q07ZX8|CLPP_SHEFN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|114335055|gb|ABI72437.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella
           frigidimarina NCIMB 400]
          Length = 203

 Score =  293 bits (751), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 125/198 (63%), Positives = 160/198 (80%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
            E V   LVPMVVEQT +GERSYDIYSRLLKER++F+ GQ+E+HMA LI AQLLFLE+E+
Sbjct: 5   PESVLNALVPMVVEQTAKGERSYDIYSRLLKERVIFLVGQVEEHMANLIVAQLLFLESES 64

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
           P K+I LYINSPGG VTAGMAIYDTMQFIKP +ST CMGQAASMG+ LL+ G KG R  L
Sbjct: 65  PDKDIYLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCMGQAASMGAFLLAGGAKGKRHCL 124

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           PN+R+++HQP GGF GQASDI  HA++I+ IK +LN++  ++ G+  + +E+  DRD+ M
Sbjct: 125 PNSRVMIHQPLGGFQGQASDIAIHAKEILGIKNKLNQMLAEHTGQPLDIIERDTDRDNFM 184

Query: 191 SASEACDWGVVDKVLMSR 208
           SA++A ++G+VD +L SR
Sbjct: 185 SATQAVEYGIVDSLLTSR 202


>gi|170692395|ref|ZP_02883558.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           graminis C4D1M]
 gi|307729638|ref|YP_003906862.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           sp. CCGE1003]
 gi|323526047|ref|YP_004228200.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           sp. CCGE1001]
 gi|170142825|gb|EDT10990.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           graminis C4D1M]
 gi|307584173|gb|ADN57571.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           sp. CCGE1003]
 gi|323383049|gb|ADX55140.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           sp. CCGE1001]
          Length = 217

 Score =  293 bits (750), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 122/217 (56%), Positives = 156/217 (71%), Gaps = 8/217 (3%)

Query: 1   MSFEGC--------AKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIE 52
           M+F           + +D E   LGLVP+VVE + RGERSYDIYSRLLKERIVF+ G++ 
Sbjct: 1   MTFRAQMLDTLTSQSSRDLEAQALGLVPIVVETSGRGERSYDIYSRLLKERIVFLVGEVN 60

Query: 53  DHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAA 112
           D  A L+ AQ+LFLE+ENP K+I  YINSPGG V+AGMAIYDTMQFIKP +ST CMG AA
Sbjct: 61  DQTANLVVAQMLFLESENPDKDIYFYINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAA 120

Query: 113 SMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKN 172
           SMG+ LL+AG KG RFALPN+R+++HQP GG  GQASDIE  A++I+ +K RLN +   +
Sbjct: 121 SMGAFLLAAGAKGKRFALPNSRVMIHQPLGGARGQASDIEIQAREILYLKERLNHLLAHH 180

Query: 173 CGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
            G+  E + +  DRD+ MS  +A  +G+VD+V   R 
Sbjct: 181 TGQPVERIARDTDRDNFMSGDDAQAYGLVDQVAHKRP 217


>gi|78485521|ref|YP_391446.1| ATP-dependent Clp protease proteolytic subunit [Thiomicrospira
           crunogena XCL-2]
 gi|110816468|sp|Q31GF1|CLPP_THICR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|78363807|gb|ABB41772.1| ATP-dependent Clp protease proteolytic subunit ClpP [Thiomicrospira
           crunogena XCL-2]
          Length = 200

 Score =  293 bits (750), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 132/199 (66%), Positives = 164/199 (82%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
            S  +   LVPMV+EQT+RGERS+DIYSRLLKER++F+ GQ+EDHMA LI AQLLFLE+E
Sbjct: 2   HSTPIQDALVPMVIEQTSRGERSFDIYSRLLKERVIFLVGQVEDHMANLIVAQLLFLESE 61

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP K+I LYINSPGG VTAGMAIYDTM+FIKP +ST C+GQAASMGS LLSAG +G R+A
Sbjct: 62  NPDKDIHLYINSPGGSVTAGMAIYDTMRFIKPDVSTMCIGQAASMGSFLLSAGAEGKRYA 121

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPN+R+++HQP GGF GQASDIE HA++I++IK++LN+    + G+  E +E   DRD+ 
Sbjct: 122 LPNSRVMIHQPLGGFQGQASDIEIHAKEIIQIKQKLNKALADHTGQPIEVIENDTDRDNF 181

Query: 190 MSASEACDWGVVDKVLMSR 208
           MSA EACD+G+VDKVL  R
Sbjct: 182 MSADEACDYGLVDKVLTRR 200


>gi|300114126|ref|YP_003760701.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nitrosococcus
           watsonii C-113]
 gi|299540063|gb|ADJ28380.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nitrosococcus
           watsonii C-113]
          Length = 203

 Score =  293 bits (750), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 122/199 (61%), Positives = 158/199 (79%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
           D    LVPMVVEQT RGER+YDIYSRLLKER+VF+ G +EDHMA L+ AQLLFLE+ENP 
Sbjct: 3   DSLNTLVPMVVEQTARGERAYDIYSRLLKERVVFLVGPVEDHMANLVVAQLLFLESENPD 62

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K+I LYINSPGG VTAG++IYDTMQFIKP +ST C+GQAASMG++LL+ G  G R  LP+
Sbjct: 63  KDIHLYINSPGGSVTAGLSIYDTMQFIKPDVSTLCVGQAASMGAVLLAGGAPGKRHCLPH 122

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           +R+L+HQP GGF GQA+DI+ HA++I+ ++ RLN I  K+ G+  E+++   DRD+ MSA
Sbjct: 123 SRLLIHQPLGGFQGQATDIDIHAREILLVRERLNHILAKHTGQPIEKIQHDTDRDYFMSA 182

Query: 193 SEACDWGVVDKVLMSRIDI 211
           +E+  +G+VD VL  R +I
Sbjct: 183 TESLAYGLVDSVLKQRTEI 201


>gi|291550775|emb|CBL27037.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ruminococcus
           torques L2-14]
          Length = 193

 Score =  293 bits (750), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 114/192 (59%), Positives = 155/192 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLLKERI+F+  ++ D  A++I AQLLFLEA++P K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLKERIIFLGEEVNDVSASVIVAQLLFLEADDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG+AIYDTMQ+IK  +ST C+G AASMG+ LLS G+KG RFALPNA I
Sbjct: 61  QLYINSPGGSVTAGLAIYDTMQYIKCDVSTVCIGMAASMGAFLLSGGKKGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I+  A+ I++ K++LNEI   N GK  E +++  +RD+ MSA EA
Sbjct: 121 MIHQPSGGAQGQATEIQIAAEHILRTKKKLNEILAANTGKPLEVIQQDTERDNFMSAEEA 180

Query: 196 CDWGVVDKVLMS 207
            ++G++D+V+++
Sbjct: 181 KEYGLIDEVIVN 192


>gi|59711403|ref|YP_204179.1| ATP-dependent Clp protease proteolytic subunit [Vibrio fischeri
           ES114]
 gi|197335304|ref|YP_002155557.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           fischeri MJ11]
 gi|67460143|sp|Q5E6Q5|CLPP_VIBF1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706555|sp|B5FBZ8|CLPP_VIBFM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|59479504|gb|AAW85291.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Vibrio fischeri ES114]
 gi|197316794|gb|ACH66241.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
           fischeri MJ11]
          Length = 207

 Score =  293 bits (750), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 127/208 (61%), Positives = 162/208 (77%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS++         +   LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ 
Sbjct: 1   MSYQ--ENNAMPSIMDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE+ENP K+I LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLA 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
            G  G R+ LPN+R+++HQP GGF GQASDI+ HAQ+I+ IK++LN +  ++ G+  E +
Sbjct: 119 GGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKKKLNTLLAEHTGQPLEVI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  DRD+ MSA +A  +G+VD VL  R
Sbjct: 179 EQDTDRDNFMSADDAVKYGLVDAVLNKR 206


>gi|320540337|ref|ZP_08039989.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Serratia symbiotica str. Tucson]
 gi|320029657|gb|EFW11684.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Serratia symbiotica str. Tucson]
          Length = 207

 Score =  293 bits (750), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 128/208 (61%), Positives = 169/208 (81%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D     + LVPMVVEQT+RGERSYDIYSRLLKERI+F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--ERDQCAPNMALVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAE+P+K+I LYINSPGGV+TAGM+IYDTM+FIKP +ST CMGQA SMGS LL+
Sbjct: 59  AQMLFLEAESPEKDIFLYINSPGGVITAGMSIYDTMKFIKPDVSTICMGQACSMGSFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG K  RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+  ++ G++  ++
Sbjct: 119 AGAKSKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKARMNELMAEHTGQSLAQI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E   +RD  M+A EA ++G+VD +L  R
Sbjct: 179 ECDTERDRFMTADEAVEYGLVDGILTHR 206


>gi|329120061|ref|ZP_08248731.1| ATP-dependent Clp protease, protease subunit [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327463592|gb|EGF09910.1| ATP-dependent Clp protease, protease subunit [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 211

 Score =  292 bits (749), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 115/201 (57%), Positives = 160/201 (79%), Gaps = 2/201 (0%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            L+P V+EQ+ RGER++DIYSRLLKERI+F+ G + DH A L+ AQ+LFLE+ENP K+I 
Sbjct: 9   TLIPTVIEQSGRGERAFDIYSRLLKERIIFLIGPVNDHTANLVVAQMLFLESENPDKDIF 68

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            YINSPGG VTAGM+++DTM FIKP +ST C+GQAASMG+ LLSAG KG RFALP++R++
Sbjct: 69  FYINSPGGSVTAGMSVFDTMNFIKPDVSTLCLGQAASMGAFLLSAGAKGKRFALPHSRVM 128

Query: 137 LHQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           +HQP  SGG  GQASDIE HA++++K+K+ LNE+  K+ G+  E++E+  DRD+ MSA  
Sbjct: 129 IHQPLISGGLGGQASDIEIHARELIKLKQTLNELLAKHTGQPIEKIERDTDRDNFMSAQA 188

Query: 195 ACDWGVVDKVLMSRIDIEEKS 215
           A ++G++D+V+ +R D  + +
Sbjct: 189 AKEYGLIDQVIATRADAAKPA 209


>gi|294788594|ref|ZP_06753836.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Simonsiella
           muelleri ATCC 29453]
 gi|294483471|gb|EFG31156.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Simonsiella
           muelleri ATCC 29453]
          Length = 206

 Score =  292 bits (749), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 116/197 (58%), Positives = 157/197 (79%), Gaps = 2/197 (1%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            L+P V+EQ+ RGER++DIYSRLLKERI+F+ G + DH A L+ AQLLFLE+ENP K+I 
Sbjct: 9   TLIPTVIEQSGRGERAFDIYSRLLKERIIFLVGPVNDHTANLVVAQLLFLESENPDKDIY 68

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            YINSPGG V+AGM+I+DTM FIKP + T C+GQAASMG+ LLSAG KG RFALPN+RI+
Sbjct: 69  FYINSPGGSVSAGMSIFDTMNFIKPDVQTLCLGQAASMGAFLLSAGAKGKRFALPNSRIM 128

Query: 137 LHQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           +HQP  SGG  GQASDIE HA++++K+K +LN +  K+ G+  E++E+  DRD+ MSA  
Sbjct: 129 IHQPLISGGLGGQASDIEIHARELIKLKEKLNNLLAKHTGQPLEKIERDTDRDNFMSAQT 188

Query: 195 ACDWGVVDKVLMSRIDI 211
           A ++G++DKV+ +R ++
Sbjct: 189 AMEYGLIDKVITNREEV 205


>gi|295676517|ref|YP_003605041.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           sp. CCGE1002]
 gi|295436360|gb|ADG15530.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           sp. CCGE1002]
          Length = 217

 Score =  292 bits (749), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 122/217 (56%), Positives = 156/217 (71%), Gaps = 8/217 (3%)

Query: 1   MSFEGC--------AKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIE 52
           M+F           + +D E   LGLVP+VVE + RGERSYDIYSRLLKERIVF+ G++ 
Sbjct: 1   MTFRAQMLDTLTSQSSRDLEAQALGLVPIVVETSGRGERSYDIYSRLLKERIVFLVGEVN 60

Query: 53  DHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAA 112
           D  A L+ AQ+LFLE+ENP K+I  YINSPGG V+AGMAIYDTMQFIKP +ST CMG AA
Sbjct: 61  DQTANLVVAQMLFLESENPDKDIYFYINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAA 120

Query: 113 SMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKN 172
           SMG+ LL+AG KG RFALPN+R+++HQP GG  GQASDIE  A++I+ +K RLN +   +
Sbjct: 121 SMGAFLLAAGAKGKRFALPNSRVMIHQPLGGARGQASDIEIQAREILYLKDRLNHLLAHH 180

Query: 173 CGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
            G+  E + +  DRD+ MS  +A  +G+VD+V   R 
Sbjct: 181 TGQPVERIARDTDRDNFMSGDDAQAYGLVDQVAHKRP 217


>gi|33592842|ref|NP_880486.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
           pertussis Tohama I]
 gi|33596622|ref|NP_884265.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
           parapertussis 12822]
 gi|33601237|ref|NP_888797.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
           bronchiseptica RB50]
 gi|67460369|sp|Q7VXI7|CLPP_BORPE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|67460372|sp|Q7W8X2|CLPP_BORPA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|67460374|sp|Q7WK83|CLPP_BORBR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|33572490|emb|CAE42062.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
           pertussis Tohama I]
 gi|33573323|emb|CAE37306.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
           parapertussis]
 gi|33575672|emb|CAE32750.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
           bronchiseptica RB50]
          Length = 217

 Score =  292 bits (749), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 118/194 (60%), Positives = 152/194 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG +PMV+EQ+ RGER+YDIYSRLL+ER++F+ G + D+ A L+ AQLLFLE+ENP K+I
Sbjct: 22  LGYIPMVIEQSGRGERAYDIYSRLLRERLIFLVGPVNDNTANLVVAQLLFLESENPDKDI 81

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S YINSPGG V AGMAIYDTMQFIKP +ST C G AASMG+ LL+AG+KG RF LPN+RI
Sbjct: 82  SFYINSPGGSVYAGMAIYDTMQFIKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRI 141

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQASDI+  A++I+ ++ RLN I  +N G+  E +    +RD+ MSA +A
Sbjct: 142 MIHQPSGGAQGQASDIQIQAREILDLRERLNRILAENTGQPVERIAVDTERDNFMSAEDA 201

Query: 196 CDWGVVDKVLMSRI 209
             +G+VDKVL SR 
Sbjct: 202 VSYGLVDKVLTSRA 215


>gi|290474663|ref|YP_003467543.1| clpA-clpP ATP-dependent serine protease proteolytic subunit
           [Xenorhabdus bovienii SS-2004]
 gi|289173976|emb|CBJ80763.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
           [Xenorhabdus bovienii SS-2004]
          Length = 207

 Score =  292 bits (749), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 128/208 (61%), Positives = 169/208 (81%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G   K + +  + LVPMVVEQT RGER++DIYSRLLK+RI+F+TG +EDHMA LI 
Sbjct: 1   MSYSGKQDKYAPN--MSLVPMVVEQTARGERAFDIYSRLLKDRIIFLTGPVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I+LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDINLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GGF GQA+DIE HAQ+I+K+K R+NE+  K+ GK  E++
Sbjct: 119 AGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAQEILKVKARMNELMAKHTGKPLEKI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
            +  +RD  +SA+E+ ++G+VD +   R
Sbjct: 179 VEDTERDRFLSAAESVEYGLVDSIFTQR 206


>gi|237745591|ref|ZP_04576071.1| ATP-dependent Clp protease [Oxalobacter formigenes HOxBLS]
 gi|229376942|gb|EEO27033.1| ATP-dependent Clp protease [Oxalobacter formigenes HOxBLS]
          Length = 207

 Score =  292 bits (749), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 121/197 (61%), Positives = 160/197 (81%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           +   LG++PMV+EQ+ RGER++DIYSRLLKERI+F+ G + D  A LI AQLLFLE+ENP
Sbjct: 10  DTSMLGMIPMVIEQSGRGERAFDIYSRLLKERIIFLVGPVTDQNANLIVAQLLFLESENP 69

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+ISLYINSPGG V+AGMAIYDTMQFI+P +ST C G AASMG+ LL+AG KG RF+LP
Sbjct: 70  EKDISLYINSPGGSVSAGMAIYDTMQFIRPQVSTLCTGLAASMGAFLLAAGAKGKRFSLP 129

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+RI++HQPSGG  GQA+DIE HA++I+ ++ RLN I  +N GK  E++ +  +RD+ MS
Sbjct: 130 NSRIMIHQPSGGAQGQATDIEIHAREILYLRERLNGILAENTGKPVEQIARDTERDNFMS 189

Query: 192 ASEACDWGVVDKVLMSR 208
           A+EA D+G++D+VL  R
Sbjct: 190 AAEAKDYGLIDEVLTRR 206


>gi|308050308|ref|YP_003913874.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ferrimonas
           balearica DSM 9799]
 gi|307632498|gb|ADN76800.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ferrimonas
           balearica DSM 9799]
          Length = 207

 Score =  292 bits (749), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 125/202 (61%), Positives = 158/202 (78%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           +     L+PMVVEQT +GERSYDIYSRLLKER++F+TG +EDHMA L+ AQLLFLE+ENP
Sbjct: 6   DSPLNALIPMVVEQTAKGERSYDIYSRLLKERVIFLTGPVEDHMANLVVAQLLFLESENP 65

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+I LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+ G KG R  LP
Sbjct: 66  DKDIYLYINSPGGSVTAGMSIYDTMQFIKPDVSTVCMGQAASMGAFLLAGGAKGKRHVLP 125

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+R+++HQP GGF GQASDI  HAQ+I+ IK +LN +  ++ G+  E +E+  DRD+ MS
Sbjct: 126 NSRVMIHQPLGGFQGQASDIAIHAQEILGIKHKLNLLLAEHTGQPMEVIERDTDRDNFMS 185

Query: 192 ASEACDWGVVDKVLMSRIDIEE 213
           A++A ++G+VD VL  R    E
Sbjct: 186 ATDAVEYGLVDSVLTRRAADAE 207


>gi|115311359|sp|Q2W3H9|CLPP_MAGMM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
          Length = 203

 Score =  292 bits (749), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 128/199 (64%), Positives = 170/199 (85%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQTNRGERSYDIYSRLLKERI+F+TGQ+ D +A+LICAQLLFLE+ENP K+I+
Sbjct: 3   TLVPMVVEQTNRGERSYDIYSRLLKERIIFLTGQVYDEVASLICAQLLFLESENPSKDIA 62

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            YINSPGGVVT+G+AIYDTMQ+I+P +ST C+GQAASMGSLL++AGEKG RF+LPN+RI+
Sbjct: 63  FYINSPGGVVTSGLAIYDTMQYIRPKVSTVCIGQAASMGSLLMTAGEKGKRFSLPNSRIM 122

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  GQA+DIE  A++I+ ++ RLN IYV++ G+  + +EK ++RD  M+A EA 
Sbjct: 123 VHQPSGGAQGQATDIEIQAREILALRARLNNIYVEHTGQPLDVIEKVMERDKFMTADEAK 182

Query: 197 DWGVVDKVLMSRIDIEEKS 215
           ++G++D+V+  R  +E+ S
Sbjct: 183 EFGLIDEVVNKRPAVEDDS 201


>gi|77360986|ref|YP_340561.1| ATP-dependent Clp protease proteolytic subunit [Pseudoalteromonas
           haloplanktis TAC125]
 gi|110816463|sp|Q3IF46|CLPP_PSEHT RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|76875897|emb|CAI87118.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           (Caseinolytic protease) (Protease Ti)(Heat shock protein
           F21.5) [Pseudoalteromonas haloplanktis TAC125]
          Length = 205

 Score =  292 bits (749), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 125/198 (63%), Positives = 156/198 (78%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
            D    LVPMVVEQT +GERSYDIYSRLLKERI+F+TG +ED+MA LI AQ+LFLE+ENP
Sbjct: 6   TDPLNALVPMVVEQTPKGERSYDIYSRLLKERIIFLTGPVEDNMANLILAQMLFLESENP 65

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+I LYINSPGG VTAGMAIYDTM FIKP +ST C+GQAASMG+ LL+AG KG RF LP
Sbjct: 66  DKDIFLYINSPGGSVTAGMAIYDTMNFIKPDVSTICVGQAASMGAFLLTAGAKGKRFCLP 125

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+R+++HQP GGF GQASD E HA++I+ IK +LN +  ++ G+  + + K  DRD+ MS
Sbjct: 126 NSRVMIHQPLGGFQGQASDFEIHAKEILSIKDKLNRLMAEHTGQPLDVISKDTDRDNFMS 185

Query: 192 ASEACDWGVVDKVLMSRI 209
           A +A D+G+VD V  +R 
Sbjct: 186 ADQAVDYGIVDSVFKNRA 203


>gi|332038369|gb|EGI74814.1| ATP-dependent Clp protease proteolytic subunit [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 205

 Score =  292 bits (748), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 127/199 (63%), Positives = 158/199 (79%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
            D    LVPMVVEQT +GERSYDIYSRLLKERI+F+TGQ+ED+MA LI AQ+LFLE+ENP
Sbjct: 6   TDPLNALVPMVVEQTPKGERSYDIYSRLLKERIIFLTGQVEDNMANLILAQMLFLESENP 65

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+I LYINSPGG VTAGMAIYDTM FIKP +ST C+GQAASMG+ LL+AG KG RF LP
Sbjct: 66  DKDIFLYINSPGGSVTAGMAIYDTMNFIKPDVSTICVGQAASMGAFLLTAGAKGKRFCLP 125

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+R+++HQP GGF GQASD E HA++I+ IK +LN +  ++ G+  + + K  DRD+ MS
Sbjct: 126 NSRVMIHQPLGGFQGQASDFEIHAKEILSIKDKLNRLMAEHTGQPLDIISKDTDRDNFMS 185

Query: 192 ASEACDWGVVDKVLMSRID 210
           AS+A D+G+VD V  +R  
Sbjct: 186 ASQAVDYGLVDSVFTNRDK 204


>gi|209521458|ref|ZP_03270166.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           sp. H160]
 gi|209498114|gb|EDZ98261.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           sp. H160]
          Length = 217

 Score =  292 bits (748), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 122/217 (56%), Positives = 156/217 (71%), Gaps = 8/217 (3%)

Query: 1   MSFEGC--------AKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIE 52
           M+F           + +D E   LGLVP+VVE + RGERSYDIYSRLLKERIVF+ G++ 
Sbjct: 1   MTFRAQMLDTLTSQSSRDLETQALGLVPIVVETSGRGERSYDIYSRLLKERIVFLVGEVN 60

Query: 53  DHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAA 112
           D  A L+ AQ+LFLE+ENP K+I  YINSPGG V+AGMAIYDTMQFIKP +ST CMG AA
Sbjct: 61  DQTANLVVAQMLFLESENPDKDIYFYINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAA 120

Query: 113 SMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKN 172
           SMG+ LL+AG KG RFALPN+R+++HQP GG  GQASDIE  A++I+ +K RLN +   +
Sbjct: 121 SMGAFLLAAGAKGKRFALPNSRVMIHQPLGGARGQASDIEIQAREILYLKDRLNHLLAHH 180

Query: 173 CGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
            G+  E + +  DRD+ MS  +A  +G+VD+V   R 
Sbjct: 181 TGQPVERIARDTDRDNFMSGDDAQAYGLVDQVAHKRP 217


>gi|330427935|gb|AEC19269.1| ATP-dependent Clp protease proteolytic subunit [Pusillimonas sp.
           T7-7]
          Length = 218

 Score =  292 bits (748), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 122/195 (62%), Positives = 154/195 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG VP+V+EQ+ RGERSYDIYSRLL+ER++F  G + DH A L+ AQLLFLE+ENP K+I
Sbjct: 22  LGYVPIVIEQSGRGERSYDIYSRLLRERVIFFVGPVNDHTANLVVAQLLFLESENPDKDI 81

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG V AGMAIYDTMQFIKP +ST C G AASMG+ LL+AG KG R+ LPN+RI
Sbjct: 82  SLYINSPGGSVYAGMAIYDTMQFIKPDVSTLCTGIAASMGAFLLAAGAKGKRYTLPNSRI 141

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQASDI+  A++I+ ++ RLN I  KN G+  E + +  +RD+ MSA +A
Sbjct: 142 MIHQPSGGAQGQASDIQIQAREILSLRERLNTILAKNTGQPVERIAEDTERDNFMSAEDA 201

Query: 196 CDWGVVDKVLMSRID 210
             +G+VDKVL+SR D
Sbjct: 202 VSYGLVDKVLVSRAD 216


>gi|113970830|ref|YP_734623.1| ATP-dependent Clp protease proteolytic subunit [Shewanella sp.
           MR-4]
 gi|123029527|sp|Q0HHA1|CLPP_SHESM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|113885514|gb|ABI39566.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella sp.
           MR-4]
          Length = 202

 Score =  292 bits (748), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 125/199 (62%), Positives = 162/199 (81%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           ++ D+   LVPMV+EQT +GERS+DIYSRLLKERI+F+ GQ+E+HMA LI AQLLFLE+E
Sbjct: 3   NASDIQSALVPMVIEQTAKGERSFDIYSRLLKERIIFLVGQVEEHMANLIVAQLLFLESE 62

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           +P K+I LYINSPGG VTAGMAIYDTMQFIKP +ST C+GQAASMG+ LL+ GEKG RF 
Sbjct: 63  SPDKDIFLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFLLAGGEKGKRFC 122

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPN+R+++HQP GGF GQASDI  HAQ+I+ IK +LN +  ++ G+  E +E+  DRD+ 
Sbjct: 123 LPNSRVMIHQPLGGFQGQASDIAIHAQEILGIKHKLNLMLSEHTGQPLELIERDTDRDNF 182

Query: 190 MSASEACDWGVVDKVLMSR 208
           MSA++A ++G+VD V+  R
Sbjct: 183 MSATQAVEYGLVDAVMTKR 201


>gi|88800033|ref|ZP_01115603.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Reinekea sp.
           MED297]
 gi|88777159|gb|EAR08364.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Reinekea sp.
           MED297]
          Length = 209

 Score =  292 bits (748), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 126/192 (65%), Positives = 164/192 (85%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMVVEQT+RGERS+DIYSRLLKE ++F+ GQ+ED+MA L+ AQLLFLE+ENP K+I 
Sbjct: 18  GLVPMVVEQTSRGERSFDIYSRLLKENVIFLVGQVEDYMANLVVAQLLFLESENPDKDIH 77

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGMAIYDTMQFIKP +ST C+GQAASMG+LLL+ G KG R+ LPN+R++
Sbjct: 78  LYINSPGGSVTAGMAIYDTMQFIKPDVSTMCIGQAASMGALLLTGGAKGKRYCLPNSRMM 137

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG+ GQA+DIE HA++I+++KRRLNEI   + G+  E+VE+  DRD+ M+A +A 
Sbjct: 138 IHQPLGGYQGQATDIEIHAREILEMKRRLNEIMAHHTGRPLEDVERDTDRDNFMTAEQAV 197

Query: 197 DWGVVDKVLMSR 208
           D+G+VD+V+ +R
Sbjct: 198 DYGLVDQVITNR 209


>gi|288549991|ref|ZP_05968896.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterobacter
           cancerogenus ATCC 35316]
 gi|288316903|gb|EFC55841.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterobacter
           cancerogenus ATCC 35316]
          Length = 194

 Score =  292 bits (748), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 126/193 (65%), Positives = 166/193 (86%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI AQ+LFLEAENP+K+I
Sbjct: 1   MALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+AG KG RF LPN+R+
Sbjct: 61  YLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG+ GQA+DIE HA++I+K+K R+NE+  ++ G++ E++E+  +RD  +SA EA
Sbjct: 121 MIHQPLGGYQGQATDIEIHAREILKVKARMNELMAQHTGQSLEQIERDTERDRFLSAPEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD VL  R
Sbjct: 181 VEYGLVDSVLTHR 193


>gi|254361750|ref|ZP_04977885.1| S14 family endopeptidase ClpP [Mannheimia haemolytica PHL213]
 gi|153093285|gb|EDN74281.1| S14 family endopeptidase ClpP [Mannheimia haemolytica PHL213]
          Length = 197

 Score =  292 bits (747), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 125/196 (63%), Positives = 162/196 (82%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT++GERSYDIYSRLLKERI+F+ GQ+ED+MA LI AQLLFLEAE+P+K+I
Sbjct: 1   MALVPMVVEQTSKGERSYDIYSRLLKERIIFLNGQVEDNMANLIVAQLLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVTAG+AIYDTM FIKP ++T C GQAASMG+ LLSAG KG RFALP+ARI
Sbjct: 61  YLYINSPGGVVTAGLAIYDTMNFIKPDVATLCTGQAASMGAFLLSAGAKGKRFALPHARI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+  A++I+++K  L     ++ G++YE+V    +RD+ MSA EA
Sbjct: 121 MIHQPLGGARGQATDIQIQAEEILRLKATLTRRMAEHSGQSYEKVLADTERDNFMSAEEA 180

Query: 196 CDWGVVDKVLMSRIDI 211
            ++G++DKVL SR ++
Sbjct: 181 AEYGLIDKVLTSRSEV 196


>gi|22124934|ref|NP_668357.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pestis KIM
           10]
 gi|45440623|ref|NP_992162.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51595309|ref|YP_069500.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
           pseudotuberculosis IP 32953]
 gi|108808643|ref|YP_652559.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pestis
           Antiqua]
 gi|108811098|ref|YP_646865.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pestis
           Nepal516]
 gi|145600052|ref|YP_001164128.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pestis
           Pestoides F]
 gi|149364997|ref|ZP_01887032.1| ATP-dependent Clp protease proteolytic subunit ClpP [Yersinia
           pestis CA88-4125]
 gi|153950622|ref|YP_001402052.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
           pseudotuberculosis IP 31758]
 gi|162419837|ref|YP_001607420.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pestis
           Angola]
 gi|165926613|ref|ZP_02222445.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165935884|ref|ZP_02224454.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|166010967|ref|ZP_02231865.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166212961|ref|ZP_02238996.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167398957|ref|ZP_02304481.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167421692|ref|ZP_02313445.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167423463|ref|ZP_02315216.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|170025451|ref|YP_001721956.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
           pseudotuberculosis YPIII]
 gi|186894326|ref|YP_001871438.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
           pseudotuberculosis PB1/+]
 gi|218930187|ref|YP_002348062.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pestis
           CO92]
 gi|229838761|ref|ZP_04458920.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229896085|ref|ZP_04511255.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Yersinia pestis Pestoides A]
 gi|229899329|ref|ZP_04514472.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229901327|ref|ZP_04516449.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Yersinia pestis Nepal516]
 gi|270489513|ref|ZP_06206587.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis KIM D27]
 gi|294504888|ref|YP_003568950.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pestis
           Z176003]
 gi|21759072|sp|Q8ZC65|CLPP_YERPE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|60389537|sp|Q66DT4|CLPP_YERPS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|122980282|sp|Q1CL65|CLPP_YERPN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|123072666|sp|Q1C4K8|CLPP_YERPA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166214723|sp|A4TPE3|CLPP_YERPP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|167008652|sp|A7FLC4|CLPP_YERP3 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|21957773|gb|AAM84608.1|AE013706_3 ATP-dependent proteolytic subunit of clpA-clpP serine protease,
           heat shock protein F21.5 [Yersinia pestis KIM 10]
 gi|45435480|gb|AAS61039.1| ATP-dependent Clp protease proteolytic subunit ClpP [Yersinia
           pestis biovar Microtus str. 91001]
 gi|51588591|emb|CAH20199.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease,
           heat shock protein F21.5 [Yersinia pseudotuberculosis IP
           32953]
 gi|108774746|gb|ABG17265.1| ATP-dependent Clp protease proteolytic subunit ClpP [Yersinia
           pestis Nepal516]
 gi|108780556|gb|ABG14614.1| ATP-dependent Clp protease proteolytic subunit ClpP [Yersinia
           pestis Antiqua]
 gi|115348798|emb|CAL21752.1| ATP-dependent Clp protease proteolytic subunit ClpP [Yersinia
           pestis CO92]
 gi|145211748|gb|ABP41155.1| ATP-dependent Clp protease proteolytic subunit ClpP [Yersinia
           pestis Pestoides F]
 gi|149291410|gb|EDM41484.1| ATP-dependent Clp protease proteolytic subunit ClpP [Yersinia
           pestis CA88-4125]
 gi|152962117|gb|ABS49578.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pseudotuberculosis IP 31758]
 gi|162352652|gb|ABX86600.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis Angola]
 gi|165916029|gb|EDR34636.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|165921541|gb|EDR38738.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165989967|gb|EDR42268.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166205748|gb|EDR50228.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|166960611|gb|EDR56632.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167051461|gb|EDR62869.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167057633|gb|EDR67379.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|169751985|gb|ACA69503.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pseudotuberculosis YPIII]
 gi|186697352|gb|ACC87981.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pseudotuberculosis PB1/+]
 gi|229681256|gb|EEO77350.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Yersinia pestis Nepal516]
 gi|229687731|gb|EEO79804.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229695127|gb|EEO85174.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229701008|gb|EEO89037.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Yersinia pestis Pestoides A]
 gi|262362954|gb|ACY59675.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pestis
           D106004]
 gi|262366873|gb|ACY63430.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pestis
           D182038]
 gi|270338017|gb|EFA48794.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Yersinia
           pestis KIM D27]
 gi|294355347|gb|ADE65688.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pestis
           Z176003]
 gi|320016343|gb|ADV99914.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 207

 Score =  292 bits (747), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 131/208 (62%), Positives = 170/208 (81%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D     + LVPMVVEQT+RGERSYDI+SRLLKERI+F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--ERDQFAPNMALVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDHMANLIT 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIFLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GGF GQA+DIE HA++I+K+K R+NE+   + GK+ EE+
Sbjct: 119 AGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKEILKVKSRMNELMAYHTGKSLEEI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA ++ ++G+VD V   R
Sbjct: 179 ERDTERDRFLSAEQSVEYGLVDSVFTRR 206


>gi|257455804|ref|ZP_05621030.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enhydrobacter
           aerosaccus SK60]
 gi|257446818|gb|EEV21835.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enhydrobacter
           aerosaccus SK60]
          Length = 224

 Score =  292 bits (747), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 121/209 (57%), Positives = 163/209 (77%)

Query: 3   FEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQ 62
            +    +D       LVPMVVEQ+ RGERS+DIYSRLL+ER+VF+ GQ+EDHMA LI AQ
Sbjct: 15  IQNTVTRDVLSPQSALVPMVVEQSARGERSFDIYSRLLRERVVFLAGQVEDHMANLIVAQ 74

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           LLFLEAENP+K+I LYINSPGG V+AG+A++DTM FI+P +ST CMG A SMGS LL+AG
Sbjct: 75  LLFLEAENPEKDIHLYINSPGGSVSAGLAVFDTMNFIQPQVSTICMGGAYSMGSFLLAAG 134

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
           EKG R+AL NAR+++HQPSGG  GQA+DIE +A++I+KI+ RLN+I  +  G+  E++ +
Sbjct: 135 EKGKRYALANARVMIHQPSGGAQGQATDIEINAREILKIRERLNKILAERTGQPLEKIAR 194

Query: 183 TLDRDHIMSASEACDWGVVDKVLMSRIDI 211
            ++RD+ + A EA ++G++D+VL  R  I
Sbjct: 195 DVERDYWLDAQEAKEYGLIDEVLEKRPSI 223


>gi|223042116|ref|ZP_03612288.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           minor 202]
 gi|240950344|ref|ZP_04754614.1| ATP-dependent Clp protease proteolytic subunit ClpP [Actinobacillus
           minor NM305]
 gi|223017093|gb|EEF15533.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           minor 202]
 gi|240295155|gb|EER45974.1| ATP-dependent Clp protease proteolytic subunit ClpP [Actinobacillus
           minor NM305]
          Length = 197

 Score =  292 bits (747), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 122/196 (62%), Positives = 160/196 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+PMVVEQT++GERSYDIYSRLLKERI+F+ GQ+ED+MA LI AQLLFLEAE+P+K+I
Sbjct: 1   MALIPMVVEQTSKGERSYDIYSRLLKERIIFLNGQVEDNMANLIVAQLLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVTAG+AIYDTM FIKP ++T C GQA SMG+ LLS G KG RFALPNAR+
Sbjct: 61  YLYINSPGGVVTAGLAIYDTMNFIKPDVATLCTGQACSMGAFLLSGGAKGKRFALPNARV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+  AQ+I+K+K  L     ++ G+++++V    +RD+ MSA EA
Sbjct: 121 MIHQPLGGARGQATDIQIQAQEILKLKEMLTRKMAEHSGQSFDKVAADTERDNFMSAEEA 180

Query: 196 CDWGVVDKVLMSRIDI 211
            ++G++DKVL SR ++
Sbjct: 181 KEYGLIDKVLTSRGEV 196


>gi|170727453|ref|YP_001761479.1| ATP-dependent Clp protease proteolytic subunit [Shewanella woodyi
           ATCC 51908]
 gi|226706474|sp|B1KLT7|CLPP_SHEWM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|169812800|gb|ACA87384.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
           woodyi ATCC 51908]
          Length = 203

 Score =  292 bits (747), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 127/198 (64%), Positives = 157/198 (79%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
            E V   LVPMVVEQT +GERSYDIYSRLLKER++F+ GQ+E+HMA LI AQLLFLE+EN
Sbjct: 5   PESVLNALVPMVVEQTAKGERSYDIYSRLLKERVIFLVGQVEEHMANLIVAQLLFLESEN 64

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
           P +EISLYINSPGG VTAGMAIYDTMQFIKP +ST C+GQAASMG+ LL+ G KG R  L
Sbjct: 65  PDQEISLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFLLAGGAKGKRHCL 124

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           PN+R+++HQP GGF GQASD   HAQ+I+ IK +LN I  ++ G+  E +E+  DRD+ M
Sbjct: 125 PNSRVMIHQPLGGFQGQASDFAIHAQEILGIKNKLNNILAEHTGQPLEVIERDTDRDNFM 184

Query: 191 SASEACDWGVVDKVLMSR 208
           SA++A ++G+VD V   R
Sbjct: 185 SAAQAAEYGLVDSVFEQR 202


>gi|88705172|ref|ZP_01102884.1| ATP-dependent Clp protease, proteolytic subunit [Congregibacter
           litoralis KT71]
 gi|88700867|gb|EAQ97974.1| ATP-dependent Clp protease, proteolytic subunit [Congregibacter
           litoralis KT71]
          Length = 206

 Score =  292 bits (747), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 125/198 (63%), Positives = 158/198 (79%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
                LGLVPMVVEQT+RGERSYDIYSRLLKER+VFV GQ+EDHMA LI AQLLFLE+EN
Sbjct: 3   PPVEALGLVPMVVEQTSRGERSYDIYSRLLKERVVFVVGQVEDHMANLIVAQLLFLESEN 62

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
           P K+I LYINSPGG VTAG++IYDTMQFIKP IST C+GQAASMG+ LLS G KG R+ L
Sbjct: 63  PDKDIHLYINSPGGSVTAGLSIYDTMQFIKPDISTMCLGQAASMGAFLLSGGTKGKRYCL 122

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           PNAR ++HQPSGG  GQA+DI+  A++I+ I+ RLN +  ++ G+  E +E+  +RD  M
Sbjct: 123 PNARTMIHQPSGGAQGQATDIDIQAKEILIIRERLNRLMAEHTGQPLEVIERDTERDRFM 182

Query: 191 SASEACDWGVVDKVLMSR 208
            A ++ ++G+VD+V+ +R
Sbjct: 183 DAEQSKEYGLVDEVVTAR 200


>gi|332112672|gb|EGJ12465.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rubrivivax
           benzoatilyticus JA2]
          Length = 202

 Score =  292 bits (747), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 120/197 (60%), Positives = 157/197 (79%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E   LG+VPMV+EQ+ RGER+YDIYSRLL+ERIVF+ G + D +A L+CAQLLFLE+ENP
Sbjct: 5   ETTGLGMVPMVIEQSGRGERAYDIYSRLLRERIVFLVGPVNDQVANLVCAQLLFLESENP 64

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+ISLYINSPGG V+AG++I+DTM FIKP +ST CMG AASMGS LL AG KG RFALP
Sbjct: 65  DKDISLYINSPGGSVSAGLSIFDTMNFIKPEVSTLCMGMAASMGSFLLMAGAKGKRFALP 124

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+R+++HQPSGG  GQASDIE  A++I+K + +LN IY +  G++ E++   ++RD  +S
Sbjct: 125 NSRVMIHQPSGGAQGQASDIEIQAREIIKTREQLNRIYAERTGQSIEKIAADMERDMWLS 184

Query: 192 ASEACDWGVVDKVLMSR 208
             EA D+G++D+VL  R
Sbjct: 185 PGEAKDYGLIDQVLEKR 201


>gi|257093849|ref|YP_003167490.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257046373|gb|ACV35561.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 209

 Score =  292 bits (747), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 121/211 (57%), Positives = 162/211 (76%), Gaps = 2/211 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           M  E  +  + +   LGLVPMV+EQ+ RGER+YDIYSRLLKER+VF+ G + D  A L+ 
Sbjct: 1   MHIEHASNWNPQA--LGLVPMVIEQSGRGERAYDIYSRLLKERVVFLVGPVNDVTANLVV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLEAENP K+I  YINSPGG V+AG+++YDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQLLFLEAENPDKDIHFYINSPGGSVSAGLSVYDTMQFIKPDVSTLCMGQACSMGAFLLA 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG +G RFALPN+R+++HQP GGF GQASDI  HA++I+ ++ +LNE+   + G+  E +
Sbjct: 119 AGTRGKRFALPNSRVMIHQPMGGFQGQASDIAIHAKEILSLRAKLNELMALHTGQEIERI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           E+  DRD+ +SA EA ++G++DKVL +R  I
Sbjct: 179 ERDTDRDNFLSAQEAAEYGLIDKVLANREAI 209


>gi|260596809|ref|YP_003209380.1| ATP-dependent Clp protease proteolytic subunit [Cronobacter
           turicensis z3032]
 gi|260215986|emb|CBA28638.1| ATP-dependent Clp protease proteolytic subunit [Cronobacter
           turicensis z3032]
          Length = 214

 Score =  292 bits (747), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 127/208 (61%), Positives = 170/208 (81%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+    ++D     + LVPMVVEQT+RGERSYDI+SRLLKERI+F+TGQ+ED MA LI 
Sbjct: 8   MSYS--DERDQFAPHMALVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDQMANLIV 65

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFI+P +ST CMGQAASMG+ LL+
Sbjct: 66  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIQPDVSTICMGQAASMGAFLLT 125

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+  ++ G+  E++
Sbjct: 126 AGTKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKARMNELMAQHTGQPLEQI 185

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA EA ++G+VD ++  R
Sbjct: 186 ERDTERDRFLSAGEAVEYGLVDSIMTHR 213


>gi|315127189|ref|YP_004069192.1| ATP-dependent Clp protease proteolytic subunit [Pseudoalteromonas
           sp. SM9913]
 gi|315015703|gb|ADT69041.1| ATP-dependent Clp protease proteolytic subunit [Pseudoalteromonas
           sp. SM9913]
          Length = 205

 Score =  291 bits (746), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 126/201 (62%), Positives = 158/201 (78%)

Query: 8   KKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
                D    LVPMVVEQT +GERS+DIYSRLLKERI+F+TGQ+ED+MA LI AQ+LFLE
Sbjct: 2   NTGMTDPLNALVPMVVEQTAKGERSFDIYSRLLKERIIFLTGQVEDNMANLILAQMLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           +ENP+K+I LYINSPGG VTAGMAIYDTM FIKP +ST C+GQAASMG+ LLS G KG R
Sbjct: 62  SENPEKDIFLYINSPGGSVTAGMAIYDTMNFIKPDVSTICVGQAASMGAFLLSGGAKGKR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           F LPN+R+++HQP GGF GQASD E HA++I+ IK +LN +  ++ G+  + V +  DRD
Sbjct: 122 FCLPNSRVMIHQPLGGFQGQASDFEIHAKEILSIKDKLNRLMAEHTGQPLDVVSRDTDRD 181

Query: 188 HIMSASEACDWGVVDKVLMSR 208
           + MSAS+A D+G+VD V  +R
Sbjct: 182 NFMSASQAVDYGIVDSVFTNR 202


>gi|116243127|sp|Q0VQ90|CLPP_ALCBS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
          Length = 205

 Score =  291 bits (746), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 129/198 (65%), Positives = 162/198 (81%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           +   LGLVP+V+EQT RGERS+DIYSRLLKER++F+ GQ+EDHMA LI AQ+LFLE+ENP
Sbjct: 7   DPTNLGLVPVVIEQTARGERSFDIYSRLLKERVIFMIGQVEDHMANLIVAQMLFLESENP 66

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+I LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQAASMG+ LL+AG  G RFALP
Sbjct: 67  DKDIHLYINSPGGSVTAGMSIYDTMQFIKPDVSTMCIGQAASMGAFLLTAGAAGKRFALP 126

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           NAR+++HQP GGF GQASDIE HA++I+KIK +LN +   + G+  E++EK  DRD+ MS
Sbjct: 127 NARVMIHQPLGGFQGQASDIEIHAKEILKIKGQLNSLLAHHTGQPIEQLEKDTDRDNFMS 186

Query: 192 ASEACDWGVVDKVLMSRI 209
           A EA ++G++D VL  R 
Sbjct: 187 ADEAKEYGIIDAVLSQRP 204


>gi|153006264|ref|YP_001380589.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Anaeromyxobacter sp. Fw109-5]
 gi|166201797|sp|A7HFV9|CLPP_ANADF RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|152029837|gb|ABS27605.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Anaeromyxobacter sp. Fw109-5]
          Length = 204

 Score =  291 bits (746), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 114/198 (57%), Positives = 157/198 (79%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            +P VVEQT+RGERSYDIYSRLLK+RIVF+   I+D +A ++ AQLLFLE+E+P K+ISL
Sbjct: 5   PMPYVVEQTHRGERSYDIYSRLLKDRIVFLGTPIDDDVANVVIAQLLFLESEDPDKDISL 64

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VT+G+AIYDTMQ++KP +ST C+GQAASMG+ LL+ G  G RFA+PNARI++
Sbjct: 65  YINSPGGSVTSGLAIYDTMQYVKPQVSTICLGQAASMGAFLLAGGAAGKRFAVPNARIMI 124

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQA+DI+  A++I+++K +LN+I  K+  +  E +EK  DRD+ M A EA +
Sbjct: 125 HQPMGGFQGQATDIDIQAREILRLKAKLNDILAKHTKQPLERIEKDTDRDYFMGAGEAKE 184

Query: 198 WGVVDKVLMSRIDIEEKS 215
           +G++D+V++ +    EK 
Sbjct: 185 YGLIDEVIVHKPKATEKK 202


>gi|261494048|ref|ZP_05990551.1| S14 family endopeptidase ClpP [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261496191|ref|ZP_05992597.1| S14 family endopeptidase ClpP [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261308143|gb|EEY09440.1| S14 family endopeptidase ClpP [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261310214|gb|EEY11414.1| S14 family endopeptidase ClpP [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 197

 Score =  291 bits (746), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 125/196 (63%), Positives = 162/196 (82%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT++GERSYDIYSRLLKERI+F+ GQ+ED+MA LI AQLLFLEAE+P+K+I
Sbjct: 1   MALVPMVVEQTSKGERSYDIYSRLLKERIIFLNGQVEDNMANLIVAQLLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVTAG+AIYDTM FIKP ++T C GQAASMG+ LLSAG KG RFALP+ARI
Sbjct: 61  YLYINSPGGVVTAGLAIYDTMNFIKPDVATLCTGQAASMGAFLLSAGAKGKRFALPHARI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+  A++I+++K  L     ++ G++YE+V    +RD+ MSA EA
Sbjct: 121 MIHQPLGGARGQATDIQIQAEEILRLKATLTHRMAEHSGQSYEKVLADTERDNFMSAEEA 180

Query: 196 CDWGVVDKVLMSRIDI 211
            ++G++DKVL SR ++
Sbjct: 181 AEYGLIDKVLTSRSEV 196


>gi|153813468|ref|ZP_01966136.1| hypothetical protein RUMOBE_03888 [Ruminococcus obeum ATCC 29174]
 gi|149830412|gb|EDM85504.1| hypothetical protein RUMOBE_03888 [Ruminococcus obeum ATCC 29174]
          Length = 193

 Score =  291 bits (746), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 115/193 (59%), Positives = 150/193 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLLK+RI+F+  ++ D  A++I AQLLFLEAE+P K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLKDRIIFLGEEVNDVSASVIVAQLLFLEAEDPSKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMAIYDTM++IK  +ST C+G AASMG+ LL+ G KG RFALP++ I
Sbjct: 61  QLYINSPGGSVTAGMAIYDTMKYIKCDVSTICLGMAASMGAFLLAGGTKGKRFALPHSTI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I+  A  I + KR LNEI  +N G+ YE VEK  DRD+ M+A EA
Sbjct: 121 MIHQPSGGAQGQATEIQIVADHIAQTKRTLNEILAENTGQPYEVVEKDTDRDNYMTAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D V+  +
Sbjct: 181 KAYGLIDGVVEHK 193


>gi|117926916|ref|YP_867533.1| ATP-dependent Clp protease proteolytic subunit ClpP [Magnetococcus
           sp. MC-1]
 gi|254763794|sp|A0LDT4|CLPP_MAGSM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|117610672|gb|ABK46127.1| ATP-dependent Clp protease proteolytic subunit ClpP [Magnetococcus
           sp. MC-1]
          Length = 202

 Score =  291 bits (746), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 126/201 (62%), Positives = 166/201 (82%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVE TNRGER+YDIYSRLLKER+VF+ GQ+E+HMA L+ AQLLFLE+ENP+K+I
Sbjct: 1   MSLVPMVVETTNRGERAYDIYSRLLKERVVFLVGQVEEHMANLVVAQLLFLESENPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMAIYDTMQFI+P +ST C+GQAASMG++LL+AGE G R  LPNAR+
Sbjct: 61  HLYINSPGGSVTAGMAIYDTMQFIRPSVSTLCIGQAASMGAVLLAAGEAGKRLVLPNARV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGFSGQASD E HA++I++I+  LN++   + GK  E+V+   +RD+ +SA+EA
Sbjct: 121 MIHQPLGGFSGQASDFEIHAREILRIRENLNQVLSHHTGKPLEQVQLDTERDNFLSATEA 180

Query: 196 CDWGVVDKVLMSRIDIEEKSK 216
            ++G+VDKV+  R   E +++
Sbjct: 181 VEYGLVDKVISHRELPEAEAE 201


>gi|226314841|ref|YP_002774737.1| ATP-dependent Clp protease proteolytic subunit [Brevibacillus
           brevis NBRC 100599]
 gi|226097791|dbj|BAH46233.1| ATP-dependent Clp protease proteolytic subunit [Brevibacillus
           brevis NBRC 100599]
          Length = 198

 Score =  291 bits (746), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 113/198 (57%), Positives = 154/198 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RI+F+   I D +A ++ AQLLFL+AE+P+K+I
Sbjct: 1   MNLIPTVIEQTNRGERAYDIYSRLLKDRIIFLGTPINDTVANIVVAQLLFLQAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +TAGMAIYDTM FIKP +ST C+G AASMG+ LL+AG KG RFALPN+ +
Sbjct: 61  HLYINSPGGSITAGMAIYDTMHFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDIE  A+ I+K++  LN I  +  G+  E ++K  DRD+ +SA+EA
Sbjct: 121 MIHQPLGGAQGQASDIEIAAKRILKMRDHLNTILAERTGQPLERIQKDTDRDNFLSAAEA 180

Query: 196 CDWGVVDKVLMSRIDIEE 213
            ++G++DKV+ S    ++
Sbjct: 181 VEYGLIDKVITSEPSSKK 198


>gi|260892392|ref|YP_003238489.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ammonifex
           degensii KC4]
 gi|260864533|gb|ACX51639.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ammonifex
           degensii KC4]
          Length = 200

 Score =  291 bits (746), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 117/196 (59%), Positives = 162/196 (82%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+VVEQT+RGER+YDIYSRLLK+RI+F+ G I+DH+A L+ AQLLFLEAE+P+K+I L
Sbjct: 5   LVPIVVEQTSRGERAYDIYSRLLKDRIIFIGGPIDDHLANLVIAQLLFLEAEDPEKDIHL 64

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG+VTAGMAIYDTMQ+I+P +ST C+GQAASM + LL+AG KG R+ALP ARI+L
Sbjct: 65  YINSPGGLVTAGMAIYDTMQYIRPDVSTICLGQAASMAAFLLAAGAKGKRYALPYARIML 124

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQA+++E HA++I+++++ LNE+  K+ G+  E++ +  DRD  M+A +A D
Sbjct: 125 HQPLGGFQGQATEVEIHAREIMRMRQVLNELLSKHTGQPVEKIAQDTDRDFFMTAQQAKD 184

Query: 198 WGVVDKVLMSRIDIEE 213
           +G++D+V+  R    +
Sbjct: 185 YGLIDEVITMRKKPAK 200


>gi|120610146|ref|YP_969824.1| ATP-dependent Clp protease proteolytic subunit [Acidovorax citrulli
           AAC00-1]
 gi|326316315|ref|YP_004233987.1| ATP-dependent Clp protease proteolytic subunit [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|166201794|sp|A1TM62|CLPP_ACIAC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|120588610|gb|ABM32050.1| ATP-dependent Clp protease proteolytic subunit ClpP [Acidovorax
           citrulli AAC00-1]
 gi|323373151|gb|ADX45420.1| ATP-dependent Clp protease proteolytic subunit [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 202

 Score =  291 bits (746), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 118/198 (59%), Positives = 156/198 (78%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E   LG++PMV+EQ+ RGERSYDIYSRLLKERIVF+ G++ D  A L+ AQLLFLE+ENP
Sbjct: 5   ETQALGMIPMVIEQSGRGERSYDIYSRLLKERIVFLIGEVNDQTANLVVAQLLFLESENP 64

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+IS YINSPGG VTAGMAIYDTMQFIKP +ST C+G AASMG+ LL+AG KG RF+LP
Sbjct: 65  DKDISFYINSPGGSVTAGMAIYDTMQFIKPDVSTMCLGFAASMGAFLLAAGAKGKRFSLP 124

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N++I++HQ  GG  GQA+DIE HA+DI++ K ++N I  +  G+  E+V+   +RD+ ++
Sbjct: 125 NSKIMIHQVLGGARGQATDIEIHARDILRTKDQMNRILAERTGQPLEKVKADTERDYFLT 184

Query: 192 ASEACDWGVVDKVLMSRI 209
           A EA ++G+VD+V+  R 
Sbjct: 185 ADEAKEYGLVDQVVTQRP 202


>gi|171463607|ref|YP_001797720.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Polynucleobacter necessarius subsp. necessarius STIR1]
 gi|171193145|gb|ACB44106.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Polynucleobacter necessarius subsp. necessarius STIR1]
          Length = 209

 Score =  291 bits (746), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 121/209 (57%), Positives = 159/209 (76%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           M +     ++ E   LGLVPMV+E + RGER+YDIYSRLL+ER++F+ G++ D  A L+ 
Sbjct: 1   MIYNHSQSENLEPKGLGLVPMVIETSGRGERAYDIYSRLLRERVIFLVGEVNDQTANLVI 60

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE+ENP KEISLYINSPGG V+AG+AIYDTMQFIKP +ST CMG AASMG+ LL 
Sbjct: 61  AQLLFLESENPDKEISLYINSPGGAVSAGLAIYDTMQFIKPHVSTLCMGMAASMGAFLLC 120

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AGE G R+ALPN+R+++HQP GG  GQASDIE  A++I+ ++ RLN+I     G++ E +
Sbjct: 121 AGENGKRYALPNSRVMIHQPLGGARGQASDIEIQAREILYLRERLNKILADRTGQSIETI 180

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRI 209
            K  DRD+ MSA +A D+G++DKV+  R 
Sbjct: 181 AKDTDRDNFMSAEQARDYGLIDKVIEKRP 209


>gi|294141768|ref|YP_003557746.1| ATP-dependent Clp protease, proteolytic subunit [Shewanella
           violacea DSS12]
 gi|293328237|dbj|BAJ02968.1| ATP-dependent Clp protease, proteolytic subunit [Shewanella
           violacea DSS12]
          Length = 203

 Score =  291 bits (745), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 123/197 (62%), Positives = 156/197 (79%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
            E V   LVPMVVEQT +GERSYDIYSRLLKERI+F+ G +E+HMA L+ AQLLFLE+E+
Sbjct: 5   PESVLNALVPMVVEQTAKGERSYDIYSRLLKERIIFLVGPVEEHMANLVVAQLLFLESES 64

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
           P K+I LYINSPGG VTAGMAIYDTMQFIKP +ST C+GQAASMG+ LL+ G  G R  L
Sbjct: 65  PDKDIFLYINSPGGSVTAGMAIYDTMQFIKPDVSTVCIGQAASMGAFLLAGGAAGKRHCL 124

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           PN+R+++HQP GGF GQASDI  HAQ+I+ IK +LNE+  ++ G+  E +E+  DRD+ M
Sbjct: 125 PNSRVMIHQPLGGFQGQASDIAIHAQEILGIKNKLNEMLAEHTGQPLEVIERDTDRDNFM 184

Query: 191 SASEACDWGVVDKVLMS 207
           SA++A ++G+VD V+  
Sbjct: 185 SAAQAAEYGLVDSVMSK 201


>gi|332041211|gb|EGI77575.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Hylemonella
           gracilis ATCC 19624]
          Length = 194

 Score =  291 bits (745), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 113/194 (58%), Positives = 157/194 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +G+VP+V+EQ+ RGERSYDIYSRLL+ER++F+ G + D  A L+ AQLLFLE+ENP KEI
Sbjct: 1   MGMVPIVIEQSGRGERSYDIYSRLLRERVIFLVGPVNDQTANLVVAQLLFLESENPDKEI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG V+AGM+I+DTM FIKP +ST C+G AASMG+ LL+AG KG RF+LPN++I
Sbjct: 61  SLYINSPGGSVSAGMSIFDTMNFIKPDVSTLCIGMAASMGAFLLAAGAKGKRFSLPNSKI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE HA++I+K + +LN+I  +  G+  E++E+  +RD+ +SA EA
Sbjct: 121 MIHQPLGGAQGQATEIEIHAREILKTREQLNKILAERTGQPLEKIERDTERDYYLSADEA 180

Query: 196 CDWGVVDKVLMSRI 209
            D+G+VD+V+  R 
Sbjct: 181 KDYGLVDQVIAKRP 194


>gi|296536161|ref|ZP_06898289.1| endopeptidase Clp [Roseomonas cervicalis ATCC 49957]
 gi|296263532|gb|EFH10029.1| endopeptidase Clp [Roseomonas cervicalis ATCC 49957]
          Length = 213

 Score =  291 bits (745), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 125/211 (59%), Positives = 174/211 (82%)

Query: 6   CAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF 65
              +D  +++  LVPMV+EQT RGER++DIYSRLLKERI+F+TG + D M++LICAQLLF
Sbjct: 1   MRDRDPVELYNNLVPMVIEQTARGERAFDIYSRLLKERIIFLTGPVYDQMSSLICAQLLF 60

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           LE+ENP K+I+ YINSPGGVV+AG+A+YDTMQ+I+ P+ST C+G AASMGSLLL+AG KG
Sbjct: 61  LESENPNKDIAFYINSPGGVVSAGLAMYDTMQYIRAPVSTVCLGMAASMGSLLLTAGAKG 120

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
            RFALPN+RI++HQPSGG  GQA+DIE  A++I+ +++RLN+IYVK+ G+  EE+E+ L+
Sbjct: 121 KRFALPNSRIMVHQPSGGAQGQATDIEIQAREILALRKRLNQIYVKHTGQPIEEIERKLE 180

Query: 186 RDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           RD  MSA EA ++G++D+V++ R     +++
Sbjct: 181 RDSYMSAEEAKEFGLIDEVVLERPTTPAEAQ 211


>gi|77165153|ref|YP_343678.1| endopeptidase Clp [Nitrosococcus oceani ATCC 19707]
 gi|254434725|ref|ZP_05048233.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nitrosococcus
           oceani AFC27]
 gi|110816460|sp|Q3JAJ8|CLPP_NITOC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|76883467|gb|ABA58148.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nitrosococcus
           oceani ATCC 19707]
 gi|207091058|gb|EDZ68329.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nitrosococcus
           oceani AFC27]
          Length = 203

 Score =  291 bits (745), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 122/199 (61%), Positives = 158/199 (79%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
           D    LVPMVVEQT RGER+YDIYSRLLKER+VF+ G +EDHMA L+ AQLLFLE+ENP 
Sbjct: 3   DSLNTLVPMVVEQTARGERAYDIYSRLLKERVVFLVGPVEDHMANLVVAQLLFLESENPD 62

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K+I LYINSPGG VTAG++IYDTMQFIKP +ST C+GQAASMG++LL+ G  G R  LP+
Sbjct: 63  KDIHLYINSPGGSVTAGLSIYDTMQFIKPDVSTLCVGQAASMGAVLLAGGAGGKRHCLPH 122

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           +R+L+HQP GGF GQA+DI+ HA++I+ ++ RLN I  K+ G+  E+++   DRD+ MSA
Sbjct: 123 SRLLIHQPLGGFQGQATDIDIHAREILLVRERLNHILAKHTGQPIEKIQHDTDRDYFMSA 182

Query: 193 SEACDWGVVDKVLMSRIDI 211
           +E+  +G+VD VL  R +I
Sbjct: 183 TESLAYGLVDSVLKQRAEI 201


>gi|163759316|ref|ZP_02166402.1| ATP-dependent Clp protease proteolytic subunit [Hoeflea
           phototrophica DFL-43]
 gi|162283720|gb|EDQ34005.1| ATP-dependent Clp protease proteolytic subunit [Hoeflea
           phototrophica DFL-43]
          Length = 210

 Score =  291 bits (745), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 157/207 (75%), Positives = 184/207 (88%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           +  D  + LVPMVVEQTNRGERSYDI+SRLLKERI+F+TG +EDHMATL+CAQLLFLEAE
Sbjct: 3   NPVDTAMALVPMVVEQTNRGERSYDIFSRLLKERIIFITGPVEDHMATLVCAQLLFLEAE 62

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP+KEI+LYINSPGGVVTAGMAIYDTMQFIKP IST C+GQAASMGSLLL AGEKGMRFA
Sbjct: 63  NPKKEIALYINSPGGVVTAGMAIYDTMQFIKPAISTLCVGQAASMGSLLLCAGEKGMRFA 122

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
            PNAR+++HQPSGGF GQASDIERHAQDI+K+KRRLNE+YVK+ G+ YE VEKTLDRDH 
Sbjct: 123 TPNARVMVHQPSGGFQGQASDIERHAQDIIKMKRRLNEVYVKHTGQDYETVEKTLDRDHF 182

Query: 190 MSASEACDWGVVDKVLMSRIDIEEKSK 216
           M+A EA ++G++D+V   R +IE  ++
Sbjct: 183 MTAEEALEFGLIDRVFDKRENIEAPAE 209


>gi|254514393|ref|ZP_05126454.1| ATP-dependent Clp protease, proteolytic subunit ClpP [gamma
           proteobacterium NOR5-3]
 gi|219676636|gb|EED33001.1| ATP-dependent Clp protease, proteolytic subunit ClpP [gamma
           proteobacterium NOR5-3]
          Length = 213

 Score =  291 bits (745), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 125/193 (64%), Positives = 158/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LGLVPMVVEQT+RGERSYDIYSRLLKER+VFV GQ+EDHMA LI AQLLFLE+ENP K+I
Sbjct: 15  LGLVPMVVEQTSRGERSYDIYSRLLKERVVFVVGQVEDHMANLIVAQLLFLESENPDKDI 74

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG++IYDTMQFIKP IST C+GQAASMG+ LLS G KG R+ LPNAR 
Sbjct: 75  HLYINSPGGSVTAGLSIYDTMQFIKPDISTMCLGQAASMGAFLLSGGTKGKRYCLPNART 134

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+DI+  A++I+ I+ RLN +  ++ G+  E +E+  +RD  M A ++
Sbjct: 135 MIHQPSGGAQGQATDIDIQAKEILIIRERLNRLMAEHTGQPLEVIERDTERDRFMDAEQS 194

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD+V+ +R
Sbjct: 195 KEYGLVDEVVTAR 207


>gi|91783520|ref|YP_558726.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           xenovorans LB400]
 gi|187923896|ref|YP_001895538.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           phytofirmans PsJN]
 gi|296157827|ref|ZP_06840661.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           sp. Ch1-1]
 gi|116243110|sp|Q13Z15|CLPP2_BURXL RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|91687474|gb|ABE30674.1| ATP-dependent Clp protease proteolytic subunit ClpP [Burkholderia
           xenovorans LB400]
 gi|187715090|gb|ACD16314.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           phytofirmans PsJN]
 gi|295892073|gb|EFG71857.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           sp. Ch1-1]
          Length = 217

 Score =  291 bits (745), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 123/217 (56%), Positives = 157/217 (72%), Gaps = 8/217 (3%)

Query: 1   MSFEGC--------AKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIE 52
           M+F           + +D E   LGLVP+VVE + RGERSYDIYSRLLKERIVF+ G++ 
Sbjct: 1   MTFRAQMLDTLTSQSSRDLEAQALGLVPIVVETSGRGERSYDIYSRLLKERIVFLVGEVN 60

Query: 53  DHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAA 112
           D  A L+ AQ+LFLE+ENP K+IS YINSPGG V+AGMAIYDTMQFIKP +ST CMG AA
Sbjct: 61  DQTANLVVAQMLFLESENPDKDISFYINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAA 120

Query: 113 SMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKN 172
           SMG+ LL+AG KG RFALPN+R+++HQP GG  GQASDIE  A++I+ +K RLN +   +
Sbjct: 121 SMGAFLLAAGAKGKRFALPNSRVMIHQPLGGARGQASDIEIQAREILYLKERLNHLLAHH 180

Query: 173 CGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
            G+  E + +  DRD+ MS  +A  +G+VD+V   R 
Sbjct: 181 TGQPVERIARDTDRDNFMSGDDAQAYGLVDQVAHKRP 217


>gi|254428693|ref|ZP_05042400.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Alcanivorax
           sp. DG881]
 gi|196194862|gb|EDX89821.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Alcanivorax
           sp. DG881]
          Length = 244

 Score =  291 bits (745), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 129/198 (65%), Positives = 162/198 (81%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           +   LGLVP+V+EQT RGERS+DIYSRLLKER++F+ GQ+EDHMA LI AQ+LFLE+ENP
Sbjct: 46  DPTNLGLVPVVIEQTARGERSFDIYSRLLKERVIFMIGQVEDHMANLIVAQMLFLESENP 105

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+I LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQAASMG+ LL+AG  G RFALP
Sbjct: 106 DKDIHLYINSPGGSVTAGMSIYDTMQFIKPDVSTMCVGQAASMGAFLLTAGATGKRFALP 165

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           NAR+++HQP GGF GQASDIE HA++I+KIK +LN +   + G+  E++EK  DRD+ MS
Sbjct: 166 NARVMIHQPLGGFQGQASDIEIHAKEILKIKGQLNSLLAHHTGQPIEQLEKDTDRDNFMS 225

Query: 192 ASEACDWGVVDKVLMSRI 209
           A EA ++G++D VL  R 
Sbjct: 226 ADEAKEYGIIDAVLSQRP 243


>gi|241764198|ref|ZP_04762232.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acidovorax
           delafieldii 2AN]
 gi|241366475|gb|EER60979.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acidovorax
           delafieldii 2AN]
          Length = 202

 Score =  291 bits (745), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 115/198 (58%), Positives = 156/198 (78%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E   LG+VPMV+EQ+ RGERSYDIYSRLLKER++F+ G++ D  A L+ AQLLFLE+ENP
Sbjct: 5   ETQGLGMVPMVIEQSGRGERSYDIYSRLLKERVIFLVGEVNDQTANLVVAQLLFLESENP 64

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+IS YINSPGG VTAGM+IYDTMQFIKP +ST C+G AASMG+ LL+AG KG RF+LP
Sbjct: 65  DKDISFYINSPGGSVTAGMSIYDTMQFIKPDVSTLCVGFAASMGAFLLAAGAKGKRFSLP 124

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+++++HQ  GG  GQA+DIE HA+DI++ K ++N I  +  G+  E+V+   +RD+ ++
Sbjct: 125 NSKVMIHQVLGGARGQATDIEIHARDILRTKDQMNRILAERTGQPLEKVKADTERDYFLT 184

Query: 192 ASEACDWGVVDKVLMSRI 209
           A EA D+G++D+V+  R 
Sbjct: 185 ADEAKDYGIIDQVIHKRP 202


>gi|90021255|ref|YP_527082.1| ATP-dependent Clp protease proteolytic subunit [Saccharophagus
           degradans 2-40]
 gi|116243165|sp|Q21KA9|CLPP_SACD2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|89950855|gb|ABD80870.1| ATP-dependent Clp protease proteolytic subunit ClpP [Saccharophagus
           degradans 2-40]
          Length = 212

 Score =  291 bits (745), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 129/209 (61%), Positives = 162/209 (77%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS    +   + +V   LVPMVVEQT RGERSYDIYSRLLKER++F+ GQ+EDHMA L+ 
Sbjct: 1   MSNIDLSASSNLNVENTLVPMVVEQTARGERSYDIYSRLLKERVIFLVGQVEDHMANLVV 60

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP K+I LYINSPGG VTAG++IYDTMQFIKP +ST C+GQA SMG+ LL+
Sbjct: 61  AQMLFLEAENPDKDIHLYINSPGGSVTAGLSIYDTMQFIKPDVSTMCIGQACSMGAFLLT 120

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPNAR ++HQPSGG  GQASDI   AQ+I+K++ RLNEI   + G+  EE+
Sbjct: 121 AGAKGKRFCLPNARTMIHQPSGGAQGQASDIHIQAQEILKLRERLNEIMAGHTGRGVEEI 180

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRI 209
            +  +RD  MSA E+ ++G++DKVL  R+
Sbjct: 181 ARDTERDRFMSAHESVEYGLIDKVLERRV 209


>gi|164686707|ref|ZP_02210735.1| hypothetical protein CLOBAR_00302 [Clostridium bartlettii DSM
           16795]
 gi|164604097|gb|EDQ97562.1| hypothetical protein CLOBAR_00302 [Clostridium bartlettii DSM
           16795]
          Length = 193

 Score =  291 bits (745), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 117/193 (60%), Positives = 156/193 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP VVEQT RGER+YDIYSRLLK+RI+F++ ++ D  A+L+ AQLLFLEAE+P K+I
Sbjct: 1   MALVPTVVEQTGRGERAYDIYSRLLKDRIIFLSDEVNDTTASLVVAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMAIYDTMQ+IKP +ST C+G AASMG+ LL+AG KG RFALPN+ I
Sbjct: 61  HLYINSPGGSVTAGMAIYDTMQYIKPDVSTICIGMAASMGAFLLNAGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DIE HA+ I+KIK RLN+I  +  G+  E++++  +RD+ MSA EA
Sbjct: 121 MIHQPLGGAKGQATDIEIHAKWILKIKERLNKILSERTGQPIEKIQEDTERDNFMSAQEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++D+V+  +
Sbjct: 181 KEYGLIDEVIEKK 193


>gi|163751869|ref|ZP_02159083.1| ATP-dependent Clp protease proteolytic subunit [Shewanella benthica
           KT99]
 gi|161328219|gb|EDP99383.1| ATP-dependent Clp protease proteolytic subunit [Shewanella benthica
           KT99]
          Length = 203

 Score =  290 bits (744), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 122/197 (61%), Positives = 158/197 (80%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
            E VF  LVPMVVEQT +GERSYDIYSRLLKERI+F+ G +E+HMA L+ AQLLFLE+E+
Sbjct: 5   PESVFNALVPMVVEQTAKGERSYDIYSRLLKERIIFLVGPVEEHMANLVVAQLLFLESES 64

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
           P K+I LYINSPGG VTAGMAIYDTMQFIKP +ST C+GQAASMG+ LL+ G  G R  L
Sbjct: 65  PDKDIFLYINSPGGSVTAGMAIYDTMQFIKPDVSTVCIGQAASMGAFLLAGGAAGKRHCL 124

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           PN+R+++HQP GGF GQASDI  HAQ+I+ IK +LN++  ++ G++ E +E+  DRD+ M
Sbjct: 125 PNSRVMIHQPLGGFQGQASDIAIHAQEILGIKDKLNQMLAEHTGQSLEVIERDTDRDNFM 184

Query: 191 SASEACDWGVVDKVLMS 207
           SA++A ++G++D V+  
Sbjct: 185 SAAQAAEYGLIDSVMSK 201


>gi|289207758|ref|YP_003459824.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Thioalkalivibrio sp. K90mix]
 gi|288943389|gb|ADC71088.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thioalkalivibrio sp. K90mix]
          Length = 224

 Score =  290 bits (744), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 128/208 (61%), Positives = 163/208 (78%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS +   +       L LVPMVVEQT RGER+YDIYSRLLK+R++F  G +ED+MA +I 
Sbjct: 1   MSHDMAGQGAQHAQGLNLVPMVVEQTARGERAYDIYSRLLKDRVIFCVGPVEDYMANVIV 60

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE+ENP KEISLYINSPGG VTAGMAIYDTMQFIKP +ST C+GQAASMG++LL+
Sbjct: 61  AQLLFLESENPDKEISLYINSPGGAVTAGMAIYDTMQFIKPQVSTLCVGQAASMGAVLLA 120

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
            G  G R++LP++R+++HQP GGF GQASDI+ HA++I+KI+  LN +   + G+T E+V
Sbjct: 121 GGAPGKRYSLPHSRVMIHQPLGGFQGQASDIDIHAREILKIREELNRVLAHHTGQTVEQV 180

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  DRD  M+A EA D+G+VD VL SR
Sbjct: 181 EQDTDRDRFMTAVEAKDYGLVDNVLSSR 208


>gi|255589435|ref|XP_002534960.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis]
 gi|223524291|gb|EEF27423.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis]
          Length = 435

 Score =  290 bits (744), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 122/208 (58%), Positives = 159/208 (76%)

Query: 4   EGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQL 63
           +G  ++  E   LG +PMV+EQ+ RGERSYDIYSRLLKER++F+ G + D  A L+ AQL
Sbjct: 228 KGMMQQRMEPQGLGYIPMVIEQSGRGERSYDIYSRLLKERVIFLVGPVNDMTANLVVAQL 287

Query: 64  LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           LFLEAENP K+ISLYINSPGG VTAGM+IYDTMQFIKP +ST C+GQAASMG+ LL+AG 
Sbjct: 288 LFLEAENPDKDISLYINSPGGSVTAGMSIYDTMQFIKPDVSTLCIGQAASMGAFLLTAGA 347

Query: 124 KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
           KG RF LPN+R+++HQP GGF GQASDIE HA++I+ +K +LN I   + G+  + +   
Sbjct: 348 KGKRFCLPNSRVMIHQPLGGFQGQASDIEIHAKEILYLKDKLNGIMAHHTGQNIDTIAND 407

Query: 184 LDRDHIMSASEACDWGVVDKVLMSRIDI 211
            DRD+ MSA  A  +G+VD+V+ +R  +
Sbjct: 408 TDRDNFMSADAAKAYGLVDQVIAARSAV 435


>gi|329894939|ref|ZP_08270738.1| ATP-dependent Clp protease proteolytic subunit [gamma
           proteobacterium IMCC3088]
 gi|328922668|gb|EGG30003.1| ATP-dependent Clp protease proteolytic subunit [gamma
           proteobacterium IMCC3088]
          Length = 200

 Score =  290 bits (744), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 123/194 (63%), Positives = 160/194 (82%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LGL+PMVVEQT+RGERSYDIYSRLLKER++FV GQ+EDHMA LI AQLLFLE+ENP K+I
Sbjct: 7   LGLIPMVVEQTSRGERSYDIYSRLLKERVIFVVGQVEDHMANLIVAQLLFLESENPDKDI 66

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG+AIYDTM+FIKP ++T CMGQAASMG+ LLSAG KG R+ LPNAR 
Sbjct: 67  HLYINSPGGSVTAGLAIYDTMKFIKPDVTTTCMGQAASMGAFLLSAGAKGKRYCLPNART 126

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+DI+  A++I+ I+ RLN +  ++ G+  + +E+  +RD  M+A ++
Sbjct: 127 MIHQPSGGAQGQATDIDIQAKEILIIRERLNRLMAEHTGQPIDVIERDTERDRFMNAEQS 186

Query: 196 CDWGVVDKVLMSRI 209
            ++G+VD+V+ SR 
Sbjct: 187 KEYGLVDEVVSSRT 200


>gi|254785725|ref|YP_003073154.1| ATP-dependent Clp protease proteolytic subunit [Teredinibacter
           turnerae T7901]
 gi|259585966|sp|C5BTJ0|CLPP_TERTT RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|237684355|gb|ACR11619.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Teredinibacter turnerae T7901]
          Length = 214

 Score =  290 bits (744), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 137/206 (66%), Positives = 163/206 (79%), Gaps = 2/206 (0%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
           S  +   LVP+VVEQT RGERSYDIYSRLLKER++F+ GQ+EDHMA L+ AQLLFLEAEN
Sbjct: 11  STTIQSSLVPIVVEQTARGERSYDIYSRLLKERVIFLVGQVEDHMANLVVAQLLFLEAEN 70

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
           P K+I LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQA SMGS LLSAG  G RF L
Sbjct: 71  PDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDVSTMCIGQACSMGSFLLSAGATGKRFCL 130

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           PNAR ++HQPSGG  GQASDI  HAQ+I+KI+ RLNEI  K+ GK+ EEV +  +RD+ M
Sbjct: 131 PNARTMIHQPSGGAQGQASDIHIHAQEILKIRARLNEIMAKHTGKSVEEVARDTERDNFM 190

Query: 191 SASEACDWGVVDKVLMSRIDIEEKSK 216
           SA E+  +G+VD VL  R  + E+SK
Sbjct: 191 SAEESKAYGLVDDVLYQR--VPEESK 214


>gi|220934115|ref|YP_002513014.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995425|gb|ACL72027.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 216

 Score =  290 bits (744), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 125/215 (58%), Positives = 168/215 (78%), Gaps = 1/215 (0%)

Query: 1   MSFEGCAKKDSEDVF-LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLI 59
           MS +G   + + D   L LVPMVVEQT RGER+YDIYSRLLKER++F  G +ED+MA +I
Sbjct: 1   MSNQGIGDRGALDTRALNLVPMVVEQTARGERAYDIYSRLLKERVIFAVGPVEDYMANVI 60

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
            AQLLFLE+ENP K+ISLYINSPGG VTAGMAIYDTMQFIKP +ST C+GQAASMG++LL
Sbjct: 61  VAQLLFLESENPDKDISLYINSPGGAVTAGMAIYDTMQFIKPDVSTLCIGQAASMGAVLL 120

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
           + G KG RF LP++R+++HQP GGF GQA+DI+ HA++I+K++  LN I   + G++ E+
Sbjct: 121 AGGAKGKRFCLPHSRVMIHQPLGGFQGQATDIDIHAREILKVRAELNRILAHHTGQSIEQ 180

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           +E+  +RD  ++  EA ++G++D+VL SR   E+ 
Sbjct: 181 IEQDTERDRFLNPVEAAEYGLIDQVLSSREMAEQA 215


>gi|116243153|sp|Q1Q8J2|CLPP_PSYCK RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
          Length = 215

 Score =  290 bits (744), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 122/205 (59%), Positives = 162/205 (79%)

Query: 5   GCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLL 64
             A+ +       LVPMVVEQ+ RGERS+DI+SRLL+ER++F+TGQ+EDHMA LI AQLL
Sbjct: 8   QSAQYNQSATQAALVPMVVEQSARGERSFDIFSRLLRERVIFLTGQVEDHMANLIVAQLL 67

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           FLEAENP K+I LYINSPGG V+AG+AI+DTM FIKP +ST CMG A SMGS LL+AGEK
Sbjct: 68  FLEAENPDKDIHLYINSPGGSVSAGLAIFDTMNFIKPEVSTICMGGAYSMGSFLLAAGEK 127

Query: 125 GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
           G R+AL NAR+++HQPSGG  GQA+DIE +A++I+K + RLNEI  +  G+  +++EK +
Sbjct: 128 GKRYALANARVMIHQPSGGAQGQATDIEINAREILKTRARLNEILAERTGQPVDKIEKDV 187

Query: 185 DRDHIMSASEACDWGVVDKVLMSRI 209
           +RD+ + A EA ++G++D+VL  R 
Sbjct: 188 ERDYWLDAKEAKEYGLIDEVLERRP 212


>gi|33241265|ref|NP_876207.1| protease subunit of ATP-dependent Clp protease [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
 gi|67460520|sp|Q7V9L6|CLPP3_PROMA RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
           AltName: Full=Endopeptidase Clp 3
 gi|33238795|gb|AAQ00860.1| Protease subunit of ATP-dependent Clp protease [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
          Length = 216

 Score =  290 bits (744), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 103/191 (53%), Positives = 145/191 (75%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G++P V+EQ+ RGER++DIYSRLL+ERI+F+   + D +A  + AQ+LFLEAE+P+K+I 
Sbjct: 24  GVLPTVIEQSGRGERAFDIYSRLLRERIIFLGTDVNDQIADALVAQMLFLEAEDPEKDIQ 83

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAG+AIYDTMQ + P I T C G AASMG+ LL+ G KG R ALPN+RI+
Sbjct: 84  LYINSPGGSVTAGLAIYDTMQQVNPDIVTMCYGLAASMGAFLLAGGSKGKRLALPNSRIM 143

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA +IE  A++I+ +K  LN +  ++ G++ E++ +  DRDH +S  EA 
Sbjct: 144 IHQPLGGAQGQAVEIEIQAKEILFLKETLNNLLAEHTGQSLEKISEDTDRDHFLSPQEAV 203

Query: 197 DWGVVDKVLMS 207
           ++G++DKV+ S
Sbjct: 204 EYGLIDKVVNS 214


>gi|221215056|ref|ZP_03588023.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           multivorans CGD1]
 gi|221164992|gb|EED97471.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           multivorans CGD1]
          Length = 208

 Score =  290 bits (744), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 121/203 (59%), Positives = 158/203 (77%)

Query: 7   AKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
           A +  E   LGLVP+VVE + RGERSYDIYSRLLKER+VF+ G++ D  A L+ AQLLFL
Sbjct: 6   APQGFEAQALGLVPIVVETSGRGERSYDIYSRLLKERLVFMVGEVNDQTANLVVAQLLFL 65

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E+ENP K+ISLYINSPGG V+AGMAIYDTMQFIKP +ST CMG AASMG+ LL++G KG 
Sbjct: 66  ESENPDKDISLYINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLASGAKGK 125

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           RFALPN+R+++HQP GG  GQASDIE  A++I+ +K RLN +  ++ G+  E + +  DR
Sbjct: 126 RFALPNSRVMIHQPLGGARGQASDIEIQAREILYLKERLNHLLAQHTGQDVERIARDTDR 185

Query: 187 DHIMSASEACDWGVVDKVLMSRI 209
           D+ MS+ +A  +G++D+VL+ R 
Sbjct: 186 DNFMSSEDAKAYGLIDQVLLKRP 208


>gi|152968972|ref|YP_001334081.1| ATP-dependent Clp protease proteolytic subunit [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|262042473|ref|ZP_06015632.1| ATP-dependent Clp protease [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330011533|ref|ZP_08307119.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Klebsiella sp. MS 92-3]
 gi|150953821|gb|ABR75851.1| ATP-dependent Clp protease proteolytic subunit [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|259040177|gb|EEW41289.1| ATP-dependent Clp protease [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328534150|gb|EGF60785.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Klebsiella sp. MS 92-3]
          Length = 194

 Score =  290 bits (744), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 125/193 (64%), Positives = 166/193 (86%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI AQ+LFLEAENP+K+I
Sbjct: 1   MALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+AG KG RF LPN+R+
Sbjct: 61  YLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG+ GQA+DIE HA++I+K+K R+NE+   + G++ E++E+  +RD  +SA+EA
Sbjct: 121 MIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAAEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD +L  R
Sbjct: 181 VEYGLVDSILTHR 193


>gi|167766384|ref|ZP_02438437.1| hypothetical protein CLOSS21_00888 [Clostridium sp. SS2/1]
 gi|317496812|ref|ZP_07955142.1| Clp protease [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167711975|gb|EDS22554.1| hypothetical protein CLOSS21_00888 [Clostridium sp. SS2/1]
 gi|291559217|emb|CBL38017.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [butyrate-producing bacterium SSC/2]
 gi|316895824|gb|EFV17976.1| Clp protease [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 193

 Score =  290 bits (744), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 114/193 (59%), Positives = 153/193 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLLKERI+F+  ++ D  A L+ +QLLFLE+E+P K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLKERIIFLGEEVNDVTAGLVVSQLLFLESEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGG VTAGMAIYDTMQ++K  +ST CMG AASMG+ LLS G KG R ALPNA I
Sbjct: 61  NLYINSPGGSVTAGMAIYDTMQYVKCDVSTMCMGMAASMGAFLLSGGTKGKRLALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++IE  A+ I++ K++LN I  +N G+ YE + K  +RD+ ++A EA
Sbjct: 121 MIHQPSGGAQGQATEIEIAAEHILRTKKKLNTILSENTGQPYETIVKDTERDNWLTAQEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++DKV+ +R
Sbjct: 181 LEYGLIDKVMENR 193


>gi|85713354|ref|ZP_01044368.1| Protease subunit of ATP-dependent Clp protease [Idiomarina baltica
           OS145]
 gi|85692821|gb|EAQ30805.1| Protease subunit of ATP-dependent Clp protease [Idiomarina baltica
           OS145]
          Length = 205

 Score =  290 bits (744), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 128/203 (63%), Positives = 161/203 (79%)

Query: 8   KKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
             D +D    LVPMVVEQT++GERSYDIYSRLLKER++F  GQ+EDHMA LI AQLLFLE
Sbjct: 2   SNDIQDPMAQLVPMVVEQTSKGERSYDIYSRLLKERVIFCCGQVEDHMANLIVAQLLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           ++NP K+I LYINSPGGVVTAGMAIYDTM+FIKP +ST CMGQAASMG+ LL+ G +G R
Sbjct: 62  SDNPDKDIYLYINSPGGVVTAGMAIYDTMRFIKPDVSTVCMGQAASMGAFLLAGGAQGKR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           + LPN+R+++HQP GGF GQASD E HA+ I+ +K RLN +  +N G+ YE+V +  DRD
Sbjct: 122 YCLPNSRVMIHQPLGGFQGQASDFEIHAKQILDLKERLNRMLAENTGQDYEKVARDTDRD 181

Query: 188 HIMSASEACDWGVVDKVLMSRID 210
           H ++A EA D+G+VD +L  R +
Sbjct: 182 HFLTAPEAVDYGLVDGILNKRGE 204


>gi|254448838|ref|ZP_05062294.1| ATP-dependent Clp protease, proteolytic subunit ClpP [gamma
           proteobacterium HTCC5015]
 gi|198261528|gb|EDY85817.1| ATP-dependent Clp protease, proteolytic subunit ClpP [gamma
           proteobacterium HTCC5015]
          Length = 236

 Score =  290 bits (744), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 122/207 (58%), Positives = 161/207 (77%)

Query: 2   SFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICA 61
           S          ++   LVPMVVEQ+ RGER++DIYSRLLKER++F+ GQ+E+HMA LI A
Sbjct: 30  SIGVAMNHTDNNIQANLVPMVVEQSARGERAFDIYSRLLKERVIFMVGQVEEHMANLIVA 89

Query: 62  QLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSA 121
           QLLFLEA+NP K+ISLYINSPGG VTAGMAIYDTM+FIKP +ST C+GQAASMG+ LLS 
Sbjct: 90  QLLFLEADNPDKDISLYINSPGGSVTAGMAIYDTMRFIKPDVSTLCIGQAASMGAFLLSG 149

Query: 122 GEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVE 181
           G KG RFALPN+ +++HQP GGF GQA+DI+ HA++I+K K +LN +   + G+ +E V 
Sbjct: 150 GAKGKRFALPNSSVMIHQPLGGFQGQATDIDIHARNILKTKEKLNRMLADHTGQPFERVV 209

Query: 182 KTLDRDHIMSASEACDWGVVDKVLMSR 208
           +  +RD+ M A EA ++G++D VL++R
Sbjct: 210 EDTERDNFMGADEAKEYGLIDDVLVTR 236


>gi|90417350|ref|ZP_01225275.1| ATP-dependent Clp protease, proteolytic subunit ClpP [marine gamma
           proteobacterium HTCC2207]
 gi|90330792|gb|EAS46061.1| ATP-dependent Clp protease, proteolytic subunit ClpP [marine gamma
           proteobacterium HTCC2207]
          Length = 213

 Score =  290 bits (744), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 129/209 (61%), Positives = 166/209 (79%), Gaps = 1/209 (0%)

Query: 1   MSFEGCAKKDSEDV-FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLI 59
           M+F+      + DV   GLVPMVVEQT+RGER+YDIYSRLLKER++F+ GQ+EDHMA LI
Sbjct: 1   MNFQQPYAGHTHDVQASGLVPMVVEQTSRGERAYDIYSRLLKERVIFLVGQVEDHMANLI 60

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
            AQ+LFLE+ENP K+I LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQAASMG+ LL
Sbjct: 61  VAQMLFLESENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPNVSTMCIGQAASMGAFLL 120

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
           +AG +G R+ LPN+R ++HQPSGG  GQA+DI   +Q+I+KIK RLN +  K+ G++ E+
Sbjct: 121 AAGAEGKRYCLPNSRTMIHQPSGGAQGQATDIHIQSQEILKIKSRLNNLMAKHTGQSVEK 180

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           V +  +RD+ MSA E+  +G+VD VL SR
Sbjct: 181 VTEDTERDNFMSAEESKAYGLVDDVLDSR 209


>gi|315634780|ref|ZP_07890062.1| ATP-dependent Clp protease proteolytic subunit [Aggregatibacter
           segnis ATCC 33393]
 gi|315476332|gb|EFU67082.1| ATP-dependent Clp protease proteolytic subunit [Aggregatibacter
           segnis ATCC 33393]
          Length = 193

 Score =  290 bits (744), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 119/193 (61%), Positives = 157/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++PMVV+QT+RGER+YDIYSRLLK+R++F++G++ED+MA LI AQLLFLE+E+P K+I
Sbjct: 1   MSVIPMVVDQTSRGERAYDIYSRLLKDRVIFLSGEVEDNMANLIVAQLLFLESEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGG VTAGMAIYDTMQFIKP + T C+GQA SMG+ LL+ G  G R ALP+AR+
Sbjct: 61  NLYINSPGGSVTAGMAIYDTMQFIKPDVRTLCVGQACSMGAFLLAGGAPGKRGALPHARV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQASDI+ HAQ+I+KIK  LNE    + G+  E +EK  DRD+ MSA EA
Sbjct: 121 MIHQPLGGFRGQASDIQIHAQEILKIKGTLNERLAFHTGQPIETIEKDTDRDNFMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++D+V   R
Sbjct: 181 KNYGLIDEVFTKR 193


>gi|121593621|ref|YP_985517.1| ATP-dependent Clp protease proteolytic subunit [Acidovorax sp.
           JS42]
 gi|166201795|sp|A1W5B6|CLPP_ACISJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|120605701|gb|ABM41441.1| ATP-dependent Clp protease proteolytic subunit ClpP [Acidovorax sp.
           JS42]
          Length = 202

 Score =  290 bits (744), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 117/198 (59%), Positives = 155/198 (78%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E   LG++PMV+EQ+ RGERSYDIYSRLLKER++F+ G++ D  A L+ AQLLFLE+ENP
Sbjct: 5   ETQALGMIPMVIEQSGRGERSYDIYSRLLKERVIFLVGEVNDQTANLVVAQLLFLESENP 64

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+IS YINSPGG VTAGMAIYDTMQFIKP +ST C G AASMG+ LL+AG KG R++LP
Sbjct: 65  DKDISFYINSPGGSVTAGMAIYDTMQFIKPDVSTLCCGFAASMGAFLLAAGAKGKRYSLP 124

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N++I++HQ  GG  GQA+DIE HA+DI++ K ++N I  +  G+  E+V+   +RD+ M+
Sbjct: 125 NSKIMIHQVLGGARGQATDIEIHARDILRTKEQMNRILAERTGQPIEKVKADTERDYFMT 184

Query: 192 ASEACDWGVVDKVLMSRI 209
           A EA D+G+VD+V+  R 
Sbjct: 185 ADEAKDYGIVDQVIAKRP 202


>gi|110834071|ref|YP_692930.1| ATP-dependent Clp protease, proteolytic subunitclpp [Alcanivorax
           borkumensis SK2]
 gi|110647182|emb|CAL16658.1| ATP-dependent Clp protease, proteolytic subunitClpP [Alcanivorax
           borkumensis SK2]
          Length = 218

 Score =  290 bits (743), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 129/198 (65%), Positives = 162/198 (81%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           +   LGLVP+V+EQT RGERS+DIYSRLLKER++F+ GQ+EDHMA LI AQ+LFLE+ENP
Sbjct: 20  DPTNLGLVPVVIEQTARGERSFDIYSRLLKERVIFMIGQVEDHMANLIVAQMLFLESENP 79

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+I LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQAASMG+ LL+AG  G RFALP
Sbjct: 80  DKDIHLYINSPGGSVTAGMSIYDTMQFIKPDVSTMCIGQAASMGAFLLTAGAAGKRFALP 139

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           NAR+++HQP GGF GQASDIE HA++I+KIK +LN +   + G+  E++EK  DRD+ MS
Sbjct: 140 NARVMIHQPLGGFQGQASDIEIHAKEILKIKGQLNSLLAHHTGQPIEQLEKDTDRDNFMS 199

Query: 192 ASEACDWGVVDKVLMSRI 209
           A EA ++G++D VL  R 
Sbjct: 200 ADEAKEYGIIDAVLSQRP 217


>gi|157374680|ref|YP_001473280.1| ATP-dependent Clp protease proteolytic subunit [Shewanella
           sediminis HAW-EB3]
 gi|189082467|sp|A8FTH9|CLPP_SHESH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|157317054|gb|ABV36152.1| Endopeptidase Clp [Shewanella sediminis HAW-EB3]
          Length = 203

 Score =  290 bits (743), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 126/198 (63%), Positives = 158/198 (79%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
            E V   LVPMVVEQT +GERSYDIYSRLLKER++F+ GQ+E+HMA LI AQLLFLE+E+
Sbjct: 5   PESVLNALVPMVVEQTAKGERSYDIYSRLLKERVIFLVGQVEEHMANLIVAQLLFLESES 64

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
           P K+I LYINSPGG VTAGMAIYDTMQFIKP +ST C+GQAASMG+ LL+ G +G R  L
Sbjct: 65  PDKDIYLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFLLAGGAEGKRHCL 124

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           PN+R+++HQP GGF GQASDI  HAQ+I+ IK +LN++   + G+  E +E+  DRD+ M
Sbjct: 125 PNSRVMIHQPLGGFQGQASDIAIHAQEILGIKNKLNQMLADHTGQPMEIIERDTDRDNFM 184

Query: 191 SASEACDWGVVDKVLMSR 208
           SA+EA ++G+VD VL  R
Sbjct: 185 SAAEAAEYGLVDSVLSKR 202


>gi|209694398|ref|YP_002262326.1| ATP-dependent Clp protease proteolytic subunit [Aliivibrio
           salmonicida LFI1238]
 gi|226706438|sp|B6EHK3|CLPP_ALISL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|208008349|emb|CAQ78503.1| ATP-dependent Clp protease proteolytic subunit [Aliivibrio
           salmonicida LFI1238]
          Length = 207

 Score =  290 bits (743), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 127/208 (61%), Positives = 162/208 (77%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS++         +   LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ 
Sbjct: 1   MSYQ--ENNAMPSIMDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE+ENP K+I LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLA 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
            G  G R+ LPN+R+++HQP GGF GQASDI+ HAQ+I+ IK++LN +  ++ G+  E +
Sbjct: 119 GGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKKKLNTLLAEHTGQPLEVI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           EK  DRD+ M+A +A  +G+VD VL  R
Sbjct: 179 EKDTDRDNFMAADDAVKYGLVDAVLNKR 206


>gi|330431763|gb|AEC16822.1| ATP-dependent Clp protease proteolytic subunit [Gallibacterium
           anatis UMN179]
          Length = 195

 Score =  290 bits (743), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 126/193 (65%), Positives = 157/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT RGER++DIYSRLLKER++F+ GQ+ED+MA LI AQLLFLEAENP ++I
Sbjct: 1   MALVPMVVEQTARGERAFDIYSRLLKERVIFLNGQVEDNMANLIVAQLLFLEAENPDEDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGGVVTAGMAIYDTMQFIKP + T CMGQA SMG+ LL+ G  G RFALP+ARI
Sbjct: 61  NLYINSPGGVVTAGMAIYDTMQFIKPDVRTLCMGQACSMGAFLLAGGAAGKRFALPHARI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG+ GQASDI+ HAQ+I+KIK  LN+    + G+  E VE+  DRD+ MSA  A
Sbjct: 121 MIHQPLGGYRGQASDIQIHAQEILKIKDTLNQRLAFHTGQPLEVVERDTDRDNFMSAQAA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++D+VL  R
Sbjct: 181 KEYGLIDEVLTHR 193


>gi|238759262|ref|ZP_04620429.1| ATP-dependent Clp protease proteolytic subunit [Yersinia aldovae
           ATCC 35236]
 gi|238702549|gb|EEP95099.1| ATP-dependent Clp protease proteolytic subunit [Yersinia aldovae
           ATCC 35236]
          Length = 194

 Score =  290 bits (743), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 128/193 (66%), Positives = 163/193 (84%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT+RGERSYDI+SRLLKERI+F+TGQ+EDHMA LI AQ+LFLEAENP+K+I
Sbjct: 1   MALVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDHMANLITAQMLFLEAENPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+AG KG RF LPN+R+
Sbjct: 61  FLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLTAGAKGKRFCLPNSRV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DIE HA++I+K+K R+NE+   + GK+ EE+E+  +RD  +SA +A
Sbjct: 121 MIHQPLGGFQGQATDIEIHAKEILKVKSRMNELMAHHTGKSLEEIERDTERDRFLSAQQA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD V   R
Sbjct: 181 VEYGLVDSVFTRR 193


>gi|222110341|ref|YP_002552605.1| ATP-dependent clp protease proteolytic subunit [Acidovorax ebreus
           TPSY]
 gi|254763789|sp|B9MG14|CLPP_DIAST RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|221729785|gb|ACM32605.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acidovorax
           ebreus TPSY]
          Length = 202

 Score =  290 bits (742), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 117/198 (59%), Positives = 155/198 (78%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E   LG++PMV+EQ+ RGERSYDIYSRLLKER++F+ G++ D  A L+ AQLLFLE+ENP
Sbjct: 5   ETQALGMIPMVIEQSGRGERSYDIYSRLLKERVIFLVGEVNDQTANLVVAQLLFLESENP 64

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+IS YINSPGG VTAGMAIYDTMQFIKP +ST C G AASMG+ LL+AG KG R++LP
Sbjct: 65  DKDISFYINSPGGSVTAGMAIYDTMQFIKPDVSTLCCGFAASMGAFLLAAGAKGKRYSLP 124

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N++I++HQ  GG  GQA+DIE HA+DI++ K ++N I  +  G+  E+V+   +RD+ M+
Sbjct: 125 NSKIMIHQVLGGARGQATDIEIHARDILRTKDQMNRILAERTGQPIEKVKADTERDYFMT 184

Query: 192 ASEACDWGVVDKVLMSRI 209
           A EA D+G+VD+V+  R 
Sbjct: 185 ADEAKDYGIVDQVIAKRP 202


>gi|83718816|ref|YP_442643.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           thailandensis E264]
 gi|167581577|ref|ZP_02374451.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           thailandensis TXDOH]
 gi|167619693|ref|ZP_02388324.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           thailandensis Bt4]
 gi|167836265|ref|ZP_02463148.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           thailandensis MSMB43]
 gi|110816456|sp|Q2SWQ6|CLPP_BURTA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|83652641|gb|ABC36704.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           thailandensis E264]
          Length = 207

 Score =  290 bits (742), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 121/203 (59%), Positives = 155/203 (76%)

Query: 7   AKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
           A +D E   LGLVP+VVE + RGERSYDIYSRLLKERIVF+ G++ D  A L+ AQLLFL
Sbjct: 5   APRDFEAQALGLVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFL 64

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E+ENP K+ISLYINSPGG V+AGMAIYDTMQF+KP +ST CMG AASMG+ LL++G KG 
Sbjct: 65  ESENPDKDISLYINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGK 124

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           R+ALPNAR+++HQP GG  GQASDIE  A++I+ +K RLN +   + G+  E + +  DR
Sbjct: 125 RYALPNARVMIHQPLGGARGQASDIEIQAREILYLKDRLNHLLAHHTGQDVERIARDTDR 184

Query: 187 DHIMSASEACDWGVVDKVLMSRI 209
           D+ MS+ +A  +G++D V   R 
Sbjct: 185 DNFMSSEDAKAYGLIDHVSTKRP 207


>gi|254179427|ref|ZP_04886026.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei 1655]
 gi|254200063|ref|ZP_04906429.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           mallei FMH]
 gi|147749659|gb|EDK56733.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           mallei FMH]
 gi|184209967|gb|EDU07010.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei 1655]
          Length = 211

 Score =  290 bits (742), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 120/203 (59%), Positives = 155/203 (76%)

Query: 7   AKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
           A +D E   LGLVP+VVE + RGERSYDIYSRLLKERIVF+ G++ D  A L+ AQLLFL
Sbjct: 9   APRDFEAQALGLVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFL 68

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E+ENP K+ISLYINSPGG V+AGMAIYDTMQF+KP +ST CMG AASMG+ LL++G KG 
Sbjct: 69  ESENPDKDISLYINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGK 128

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           R+ALPNAR+++HQP GG  GQASDIE  A++I+ ++ RLN +   + G+  E + +  DR
Sbjct: 129 RYALPNARVMIHQPLGGARGQASDIEIQAREILYLRDRLNHLLAHHTGQDVERIARDTDR 188

Query: 187 DHIMSASEACDWGVVDKVLMSRI 209
           D+ MS+ +A  +G++D V   R 
Sbjct: 189 DNFMSSEDAKAYGLIDHVSTKRP 211


>gi|257138854|ref|ZP_05587116.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           thailandensis E264]
          Length = 217

 Score =  290 bits (742), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 121/203 (59%), Positives = 155/203 (76%)

Query: 7   AKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
           A +D E   LGLVP+VVE + RGERSYDIYSRLLKERIVF+ G++ D  A L+ AQLLFL
Sbjct: 15  APRDFEAQALGLVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFL 74

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E+ENP K+ISLYINSPGG V+AGMAIYDTMQF+KP +ST CMG AASMG+ LL++G KG 
Sbjct: 75  ESENPDKDISLYINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGK 134

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           R+ALPNAR+++HQP GG  GQASDIE  A++I+ +K RLN +   + G+  E + +  DR
Sbjct: 135 RYALPNARVMIHQPLGGARGQASDIEIQAREILYLKDRLNHLLAHHTGQDVERIARDTDR 194

Query: 187 DHIMSASEACDWGVVDKVLMSRI 209
           D+ MS+ +A  +G++D V   R 
Sbjct: 195 DNFMSSEDAKAYGLIDHVSTKRP 217


>gi|238788008|ref|ZP_04631804.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
           frederiksenii ATCC 33641]
 gi|238723956|gb|EEQ15600.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
           frederiksenii ATCC 33641]
          Length = 194

 Score =  290 bits (742), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 128/193 (66%), Positives = 163/193 (84%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT+RGERSYDI+SRLLKERI+F+TGQ+EDHMA LI AQ+LFLEAENP+K+I
Sbjct: 1   MALVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDHMANLITAQMLFLEAENPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+AG KG RF LPN+R+
Sbjct: 61  FLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLTAGAKGKRFCLPNSRV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DIE HA++I+K+K R+NE+   + GK+ EE+E+  +RD  +SA +A
Sbjct: 121 MIHQPLGGFQGQATDIEIHAKEILKVKSRMNELMAHHTGKSLEEIERDTERDRFLSAEQA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD V   R
Sbjct: 181 VEYGLVDSVFTRR 193


>gi|302878843|ref|YP_003847407.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Gallionella
           capsiferriformans ES-2]
 gi|302581632|gb|ADL55643.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Gallionella
           capsiferriformans ES-2]
          Length = 202

 Score =  290 bits (742), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 123/198 (62%), Positives = 163/198 (82%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E   +G++PMVVE + RGER+YDIYSRLLKER+VF+ G++ DH A LI AQ+LFLE+ENP
Sbjct: 5   EPQNIGMIPMVVETSGRGERAYDIYSRLLKERVVFLVGEVNDHSANLIVAQMLFLESENP 64

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+I  YINSPGG VTAGMAIYDTMQFIKP +ST C+GQAASMG+ LL+AGEKG RFALP
Sbjct: 65  DKDIHFYINSPGGSVTAGMAIYDTMQFIKPAVSTLCIGQAASMGAFLLTAGEKGKRFALP 124

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+R+++HQP GGF GQASDIE HA++I+ +K++LN++   + G+T E +E+  DRD+ +S
Sbjct: 125 NSRVMIHQPLGGFRGQASDIEIHAREILYLKQKLNQMLADHTGQTVEAIERDTDRDNFLS 184

Query: 192 ASEACDWGVVDKVLMSRI 209
           A++A  +G+VD+VL  R+
Sbjct: 185 AADAVAYGLVDQVLEKRV 202


>gi|261346364|ref|ZP_05974008.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Providencia
           rustigianii DSM 4541]
 gi|282565678|gb|EFB71213.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Providencia
           rustigianii DSM 4541]
          Length = 206

 Score =  290 bits (742), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 128/193 (66%), Positives = 164/193 (84%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMV+EQT+RGERSYDIYSRLLKERI+F+TGQ+EDHMA LI AQ+LFLEAENP+K+I
Sbjct: 14  MALVPMVIEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAENPEKDI 73

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+AG KG RF LPN+R+
Sbjct: 74  HLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLTAGTKGKRFCLPNSRV 133

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG+ GQA+DIE HAQ+I+K+K R+NE+   + GK+ EE+ +  +RD  +SA+EA
Sbjct: 134 MIHQPLGGYQGQATDIEIHAQEILKVKSRMNELMAHHTGKSIEEISRDTERDRFLSANEA 193

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD +  SR
Sbjct: 194 KEYGLVDHIYTSR 206


>gi|222528715|ref|YP_002572597.1| ATP-dependent Clp protease proteolytic subunit
           [Caldicellulosiruptor bescii DSM 6725]
 gi|312622971|ref|YP_004024584.1| ATP-dependent clp protease, proteolytic subunit clpp
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|222455562|gb|ACM59824.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Caldicellulosiruptor bescii DSM 6725]
 gi|312203438|gb|ADQ46765.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 195

 Score =  290 bits (742), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 120/195 (61%), Positives = 154/195 (78%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
              LVP+V+EQTNRGER+YDIYSRLLK+RIV ++G+I D +A+LI AQLLFLEAE+P K+
Sbjct: 1   MSALVPIVIEQTNRGERAYDIYSRLLKDRIVILSGEITDDIASLIVAQLLFLEAEDPDKD 60

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I LYINSPGG VTAG AIYDTMQ+IKP +ST C+G AASMG+ LL+AG KG RFALPN+ 
Sbjct: 61  IYLYINSPGGSVTAGFAIYDTMQYIKPDVSTICVGLAASMGAFLLAAGAKGKRFALPNSE 120

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQP GG  GQA+DI+ HA+ I+KIK R+N+I  +  G+  E +E+  DRD  M+A E
Sbjct: 121 IMIHQPLGGVRGQATDIKIHAEWILKIKNRINKILSERTGQPIEVIERDTDRDFFMTAEE 180

Query: 195 ACDWGVVDKVLMSRI 209
           A  +G++DKV+  R 
Sbjct: 181 ALKYGIIDKVIERRP 195


>gi|51246390|ref|YP_066274.1| ATP-dependent Clp protease, proteolytic subunit (ClpP)
           [Desulfotalea psychrophila LSv54]
 gi|50877427|emb|CAG37267.1| probable ATP-dependent Clp protease, proteolytic subunit (ClpP)
           [Desulfotalea psychrophila LSv54]
          Length = 213

 Score =  290 bits (742), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 121/201 (60%), Positives = 161/201 (80%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
             V + L+PMVVEQT RGERSYDIYSRLLKERI+F+   + D +A +I AQLLFLEAE+P
Sbjct: 7   RSVIMNLIPMVVEQTPRGERSYDIYSRLLKERIIFLGSGVNDDVANVIVAQLLFLEAEDP 66

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+I+ YINSPGG VTAGMAIYDTMQ+IK  I+T CMGQAASMG++LL+AG  G R+ALP
Sbjct: 67  EKDITFYINSPGGSVTAGMAIYDTMQYIKCDIATLCMGQAASMGAVLLAAGTAGKRYALP 126

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+RI++HQP GGF GQA+DIE H ++I++I++ LN I   + GKT +++E   +RD+ MS
Sbjct: 127 NSRIMIHQPLGGFQGQATDIEIHTKEILRIRKDLNNILAHHTGKTLKKIESDTERDNFMS 186

Query: 192 ASEACDWGVVDKVLMSRIDIE 212
           + EA  +G++D+VL+ R D+E
Sbjct: 187 SVEAQKYGLIDEVLVKREDVE 207


>gi|319763664|ref|YP_004127601.1| ATP-dependent clp protease, proteolytic subunit clpp
           [Alicycliphilus denitrificans BC]
 gi|330824071|ref|YP_004387374.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Alicycliphilus denitrificans K601]
 gi|317118225|gb|ADV00714.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Alicycliphilus denitrificans BC]
 gi|329309443|gb|AEB83858.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Alicycliphilus denitrificans K601]
          Length = 202

 Score =  290 bits (742), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 118/198 (59%), Positives = 156/198 (78%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E   LG++PMV+EQ+ RGERSYDIYSRLLKER++F+ G++ D  A L+ AQLLFLE+ENP
Sbjct: 5   ETQALGMIPMVIEQSGRGERSYDIYSRLLKERVIFLVGEVNDQTANLVVAQLLFLESENP 64

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+IS YINSPGG VTAGMAIYDTMQFIKP +ST C G AASMG+ LL+AG KG RF+LP
Sbjct: 65  DKDISFYINSPGGSVTAGMAIYDTMQFIKPDVSTLCCGFAASMGAFLLAAGAKGKRFSLP 124

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N++I++HQ  GG  GQA+DIE HA+DI++ K ++N I  +  G++ E+V+   +RD+ M+
Sbjct: 125 NSKIMIHQVLGGARGQATDIEIHARDILRTKDQMNRILAERTGQSIEKVKADTERDYFMT 184

Query: 192 ASEACDWGVVDKVLMSRI 209
           A EA D+G+VD+V+  R 
Sbjct: 185 ADEARDYGLVDQVISKRP 202


>gi|124266485|ref|YP_001020489.1| ATP-dependent Clp protease proteolytic subunit ClpP [Methylibium
           petroleiphilum PM1]
 gi|189082491|sp|A2SFB5|CLPP_METPP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|124259260|gb|ABM94254.1| ATP-dependent Clp protease proteolytic subunit ClpP [Methylibium
           petroleiphilum PM1]
          Length = 202

 Score =  290 bits (742), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 115/198 (58%), Positives = 155/198 (78%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E   LG+VP+V+EQ+ RGER+YDIYSRLL+ER++F+ G + D  A L+ AQLLFLE+ENP
Sbjct: 5   ETQNLGMVPVVIEQSGRGERAYDIYSRLLRERVIFLVGPVNDQTANLVVAQLLFLESENP 64

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+ISLYINSPGG V+AG++I+DTMQFIKP +ST CMG AASMG+ LL+AG KG RFALP
Sbjct: 65  DKDISLYINSPGGSVSAGLSIFDTMQFIKPDVSTLCMGIAASMGAFLLAAGAKGKRFALP 124

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+R+++HQPSGG  GQA+DIE  A++I+K++  LN I  +  G+  E++    +RD+ MS
Sbjct: 125 NSRVMIHQPSGGAQGQATDIEIQAREILKLRESLNGILAERTGQPLEKIRADSERDYFMS 184

Query: 192 ASEACDWGVVDKVLMSRI 209
           A EA  +G++DKV+  R 
Sbjct: 185 AEEATGYGLIDKVIAQRA 202


>gi|53723667|ref|YP_103112.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia mallei
           ATCC 23344]
 gi|76808778|ref|YP_333874.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           pseudomallei 1710b]
 gi|167719122|ref|ZP_02402358.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           pseudomallei DM98]
 gi|167738116|ref|ZP_02410890.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           pseudomallei 14]
 gi|167815308|ref|ZP_02446988.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           pseudomallei 91]
 gi|167823710|ref|ZP_02455181.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           pseudomallei 9]
 gi|167845261|ref|ZP_02470769.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           pseudomallei B7210]
 gi|167893805|ref|ZP_02481207.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           pseudomallei 7894]
 gi|167902257|ref|ZP_02489462.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           pseudomallei NCTC 13177]
 gi|167910496|ref|ZP_02497587.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           pseudomallei 112]
 gi|167918525|ref|ZP_02505616.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           pseudomallei BCC215]
 gi|67460238|sp|Q62JK7|CLPP_BURMA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|92087004|sp|Q3JRC9|CLPP_BURP1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|52427090|gb|AAU47683.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           mallei ATCC 23344]
 gi|76578231|gb|ABA47706.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei 1710b]
          Length = 207

 Score =  290 bits (742), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 120/203 (59%), Positives = 155/203 (76%)

Query: 7   AKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
           A +D E   LGLVP+VVE + RGERSYDIYSRLLKERIVF+ G++ D  A L+ AQLLFL
Sbjct: 5   APRDFEAQALGLVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFL 64

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E+ENP K+ISLYINSPGG V+AGMAIYDTMQF+KP +ST CMG AASMG+ LL++G KG 
Sbjct: 65  ESENPDKDISLYINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGK 124

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           R+ALPNAR+++HQP GG  GQASDIE  A++I+ ++ RLN +   + G+  E + +  DR
Sbjct: 125 RYALPNARVMIHQPLGGARGQASDIEIQAREILYLRDRLNHLLAHHTGQDVERIARDTDR 184

Query: 187 DHIMSASEACDWGVVDKVLMSRI 209
           D+ MS+ +A  +G++D V   R 
Sbjct: 185 DNFMSSEDAKAYGLIDHVSTKRP 207


>gi|114567171|ref|YP_754325.1| ATP-dependent Clp protease proteolytic subunit [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|122317850|sp|Q0AWF0|CLPP_SYNWW RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|114338106|gb|ABI68954.1| ATP-dependent Clp protease proteolytic subunit ClpP [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
          Length = 200

 Score =  290 bits (742), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 118/197 (59%), Positives = 157/197 (79%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQTNRGERSYDIYSRLLK+RI+F+   I+D +A L+ AQLLFLEAE+P K+ISL
Sbjct: 4   LVPMVVEQTNRGERSYDIYSRLLKDRIIFLGSGIDDTVANLVIAQLLFLEAEDPDKDISL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TAGMAIYDT+Q+I+P +ST C+G AASMG+ LL+AG+KG R+ALPNA I++
Sbjct: 64  YINSPGGSITAGMAIYDTLQYIRPDVSTICVGLAASMGAFLLAAGKKGKRYALPNAEIMI 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP+GG  GQA+DIE HA+ I+ +K  LN+I  +  G+  E ++K  DRD+ M+A EA +
Sbjct: 124 HQPAGGTQGQATDIEIHARRIMNMKESLNKILAERTGQPLERIQKDTDRDYFMTAQEAKE 183

Query: 198 WGVVDKVLMSRIDIEEK 214
           +G++D+V+       +K
Sbjct: 184 YGIIDEVISHPKKTSKK 200


>gi|53719039|ref|YP_108025.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           pseudomallei K96243]
 gi|121601387|ref|YP_993274.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia mallei
           SAVP1]
 gi|124386617|ref|YP_001029282.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia mallei
           NCTC 10229]
 gi|126440189|ref|YP_001059356.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           pseudomallei 668]
 gi|126450257|ref|YP_001080784.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia mallei
           NCTC 10247]
 gi|126451473|ref|YP_001066627.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           pseudomallei 1106a]
 gi|134277993|ref|ZP_01764708.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei 305]
 gi|217421679|ref|ZP_03453183.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei 576]
 gi|226197408|ref|ZP_03792985.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei Pakistan 9]
 gi|237812684|ref|YP_002897135.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei MSHR346]
 gi|238562204|ref|ZP_00440781.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           mallei GB8 horse 4]
 gi|242317499|ref|ZP_04816515.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei 1106b]
 gi|251766649|ref|ZP_02264557.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           mallei PRL-20]
 gi|254178458|ref|ZP_04885113.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           mallei ATCC 10399]
 gi|254189184|ref|ZP_04895695.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254206398|ref|ZP_04912750.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           mallei JHU]
 gi|254258354|ref|ZP_04949408.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei 1710a]
 gi|254297312|ref|ZP_04964765.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei 406e]
 gi|254358192|ref|ZP_04974465.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           mallei 2002721280]
 gi|67460243|sp|Q63V41|CLPP_BURPS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166201803|sp|A3MKJ8|CLPP_BURM7 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166201804|sp|A2SBG3|CLPP_BURM9 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166201805|sp|A1V4X1|CLPP_BURMS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166201806|sp|A3NWA6|CLPP_BURP0 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166201807|sp|A3NAI5|CLPP_BURP6 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|52209453|emb|CAH35404.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           pseudomallei K96243]
 gi|121230197|gb|ABM52715.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           mallei SAVP1]
 gi|124294637|gb|ABN03906.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           mallei NCTC 10229]
 gi|126219682|gb|ABN83188.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei 668]
 gi|126225115|gb|ABN88655.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei 1106a]
 gi|126243127|gb|ABO06220.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           mallei NCTC 10247]
 gi|134251643|gb|EBA51722.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei 305]
 gi|147753841|gb|EDK60906.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           mallei JHU]
 gi|148027319|gb|EDK85340.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           mallei 2002721280]
 gi|157807201|gb|EDO84371.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei 406e]
 gi|157936863|gb|EDO92533.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160699497|gb|EDP89467.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           mallei ATCC 10399]
 gi|217395421|gb|EEC35439.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei 576]
 gi|225930787|gb|EEH26797.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei Pakistan 9]
 gi|237504658|gb|ACQ96976.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei MSHR346]
 gi|238523066|gb|EEP86507.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           mallei GB8 horse 4]
 gi|242140738|gb|EES27140.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei 1106b]
 gi|243065058|gb|EES47244.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           mallei PRL-20]
 gi|254217043|gb|EET06427.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei 1710a]
          Length = 217

 Score =  289 bits (741), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 120/203 (59%), Positives = 155/203 (76%)

Query: 7   AKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
           A +D E   LGLVP+VVE + RGERSYDIYSRLLKERIVF+ G++ D  A L+ AQLLFL
Sbjct: 15  APRDFEAQALGLVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFL 74

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E+ENP K+ISLYINSPGG V+AGMAIYDTMQF+KP +ST CMG AASMG+ LL++G KG 
Sbjct: 75  ESENPDKDISLYINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGK 134

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           R+ALPNAR+++HQP GG  GQASDIE  A++I+ ++ RLN +   + G+  E + +  DR
Sbjct: 135 RYALPNARVMIHQPLGGARGQASDIEIQAREILYLRDRLNHLLAHHTGQDVERIARDTDR 194

Query: 187 DHIMSASEACDWGVVDKVLMSRI 209
           D+ MS+ +A  +G++D V   R 
Sbjct: 195 DNFMSSEDAKAYGLIDHVSTKRP 217


>gi|183601061|ref|ZP_02962554.1| hypothetical protein PROSTU_04684 [Providencia stuartii ATCC 25827]
 gi|188019401|gb|EDU57441.1| hypothetical protein PROSTU_04684 [Providencia stuartii ATCC 25827]
          Length = 206

 Score =  289 bits (741), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 131/208 (62%), Positives = 169/208 (81%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  +  +    + LVPMV+EQT+RGERSYDIYSRLLKERI+F+TGQ+EDHMA LI 
Sbjct: 1   MSYFGGQENLASQ--MALVPMVIEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMGS LL+
Sbjct: 59  AQMLFLEAENPEKDIQLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGSFLLA 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DI+ HAQ+I+K+K R+NE+   + GK+ EE+
Sbjct: 119 AGTKGKRFCLPNSRVMIHQPLGGYQGQATDIQIHAQEILKVKTRMNELMALHTGKSVEEI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
            +  +RD  +SA EA ++G+VD +  SR
Sbjct: 179 NRDTERDRFLSADEAKEYGLVDHIYTSR 206


>gi|300900508|ref|ZP_07118675.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 198-1]
 gi|300924164|ref|ZP_07140156.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 182-1]
 gi|300937054|ref|ZP_07151920.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 21-1]
 gi|300958005|ref|ZP_07170169.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 175-1]
 gi|300988008|ref|ZP_07178488.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 45-1]
 gi|300997374|ref|ZP_07181714.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 200-1]
 gi|301022569|ref|ZP_07186441.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 69-1]
 gi|301049644|ref|ZP_07196593.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 185-1]
 gi|301301588|ref|ZP_07207723.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 124-1]
 gi|301647363|ref|ZP_07247175.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 146-1]
 gi|309787029|ref|ZP_07681641.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shigella
           dysenteriae 1617]
 gi|312964538|ref|ZP_07778794.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli 2362-75]
 gi|312970533|ref|ZP_07784714.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli 1827-70]
 gi|300298581|gb|EFJ54966.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 185-1]
 gi|300304193|gb|EFJ58713.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 200-1]
 gi|300315272|gb|EFJ65056.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 175-1]
 gi|300355989|gb|EFJ71859.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 198-1]
 gi|300397450|gb|EFJ80988.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 69-1]
 gi|300407560|gb|EFJ91098.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 45-1]
 gi|300419617|gb|EFK02928.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 182-1]
 gi|300457885|gb|EFK21378.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 21-1]
 gi|300843085|gb|EFK70845.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 124-1]
 gi|301074508|gb|EFK89314.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 146-1]
 gi|308924607|gb|EFP70102.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shigella
           dysenteriae 1617]
 gi|310337182|gb|EFQ02320.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli 1827-70]
 gi|312290772|gb|EFR18649.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli 2362-75]
 gi|313646936|gb|EFS11393.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shigella
           flexneri 2a str. 2457T]
 gi|315256265|gb|EFU36233.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 85-1]
 gi|315289845|gb|EFU49235.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 110-3]
 gi|315294229|gb|EFU53580.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 153-1]
 gi|315299561|gb|EFU58809.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 16-3]
 gi|315616622|gb|EFU97239.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli 3431]
 gi|323153474|gb|EFZ39728.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli EPECa14]
 gi|323160452|gb|EFZ46400.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli E128010]
 gi|323164238|gb|EFZ50045.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shigella
           sonnei 53G]
 gi|323170523|gb|EFZ56173.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli LT-68]
 gi|323178294|gb|EFZ63872.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli 1180]
 gi|323184732|gb|EFZ70103.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli 1357]
 gi|323191357|gb|EFZ76620.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli RN587/1]
 gi|324010068|gb|EGB79287.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 57-2]
 gi|324010651|gb|EGB79870.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 60-1]
 gi|324016702|gb|EGB85921.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli MS 117-3]
 gi|325498272|gb|EGC96131.1| ATP-dependent Clp protease proteolytic subunit [Escherichia
           fergusonii ECD227]
 gi|327254765|gb|EGE66381.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Escherichia
           coli STEC_7v]
 gi|332085596|gb|EGI90760.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shigella
           dysenteriae 155-74]
 gi|332094593|gb|EGI99639.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shigella
           boydii 5216-82]
 gi|332098592|gb|EGJ03558.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shigella
           boydii 3594-74]
          Length = 194

 Score =  289 bits (741), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 125/193 (64%), Positives = 165/193 (85%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI AQ+LFLEAENP+K+I
Sbjct: 1   MALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+AG KG RF LPN+R+
Sbjct: 61  YLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG+ GQA+DIE HA++I+K+K R+NE+   + G++ E++E+  +RD  +SA EA
Sbjct: 121 MIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD +L  R
Sbjct: 181 VEYGLVDSILTHR 193


>gi|73541074|ref|YP_295594.1| ATP-dependent Clp protease proteolytic subunit [Ralstonia eutropha
           JMP134]
 gi|124013825|sp|Q472D3|CLPP_RALEJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|72118487|gb|AAZ60750.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ralstonia
           eutropha JMP134]
          Length = 216

 Score =  289 bits (741), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 120/197 (60%), Positives = 154/197 (78%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E   LGLVPMVVEQ+ RGER+YDIYSRLLKER+VF+ G++ D  A L+ AQLLFLE+ENP
Sbjct: 19  ETQGLGLVPMVVEQSGRGERAYDIYSRLLKERVVFLVGEVNDQTANLVVAQLLFLESENP 78

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+ISLYINSPGG V+AG+AIYDTMQF+KP + T CMG AASMG+ LL+AG KG R ALP
Sbjct: 79  DKDISLYINSPGGSVSAGLAIYDTMQFVKPDVQTLCMGMAASMGAFLLAAGAKGKRSALP 138

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+RI++HQP GG  GQASDIE  A++I+ ++ RLN I  +  G+  E++ +  DRD+ MS
Sbjct: 139 NSRIMIHQPLGGARGQASDIEIQAREILYLRERLNSILSEVTGQPVEKIARDTDRDNFMS 198

Query: 192 ASEACDWGVVDKVLMSR 208
             +A D+G++DKV+  R
Sbjct: 199 GDQAVDYGLIDKVIARR 215


>gi|116243156|sp|Q21Y67|CLPP_RHOFD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
          Length = 202

 Score =  289 bits (741), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 109/198 (55%), Positives = 155/198 (78%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           +   LG+VPMV+EQ+ RGERSYDIYSRLLKER++F+ G + D++A L+ AQLLFLE++NP
Sbjct: 5   QTQALGMVPMVIEQSGRGERSYDIYSRLLKERVIFLVGPVNDYVANLVVAQLLFLESDNP 64

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+IS YINSPGG V+AGMAI+DTM F+KP +ST C G AASMG+ LL+AG KG RF+LP
Sbjct: 65  DKDISFYINSPGGSVSAGMAIFDTMNFVKPDVSTLCTGMAASMGAFLLAAGAKGKRFSLP 124

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+++++HQPSGG  GQA++IE  A++I+K + +LN+I  +  G+    +E+  +RD+ MS
Sbjct: 125 NSKVMIHQPSGGSQGQATEIEIQAREILKTREQLNKILAERTGQPLARIERDTERDYYMS 184

Query: 192 ASEACDWGVVDKVLMSRI 209
           A E  ++G++D+V+  R 
Sbjct: 185 ADECKEYGLIDQVISKRA 202


>gi|110816466|sp|Q2NV79|CLPP_SODGM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
          Length = 194

 Score =  289 bits (741), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 131/194 (67%), Positives = 165/194 (85%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT+RGERSYDI+SRLLKERI+F+TGQ+EDHMA LI AQ++FLEAENP+K+I
Sbjct: 1   MALVPMVVEQTSRGERSYDIFSRLLKERIIFMTGQVEDHMANLIVAQMMFLEAENPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+TAGM+IYDTMQFIKP +STFCMGQAASMG+ LL+AG KG RF LPN+R+
Sbjct: 61  YLYINSPGGVITAGMSIYDTMQFIKPDVSTFCMGQAASMGAFLLAAGAKGKRFCLPNSRV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DIE HA++I+K+K R+NE+  K+ G+  E +E+  +RD  +SA EA
Sbjct: 121 MIHQPLGGFQGQATDIEIHAREILKVKARMNELMAKHTGQPLEVIERDTERDRFLSAPEA 180

Query: 196 CDWGVVDKVLMSRI 209
            D+G+VD VL  R 
Sbjct: 181 VDYGLVDSVLSQRT 194


>gi|15603841|ref|NP_246915.1| ATP-dependent Clp protease proteolytic subunit [Pasteurella
           multocida subsp. multocida str. Pm70]
 gi|18202809|sp|Q9CJM2|CLPP_PASMU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|12722415|gb|AAK04060.1| ClpP [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 193

 Score =  289 bits (741), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 124/193 (64%), Positives = 158/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++PMVVEQT RGERSYDIYSRLLKER++F+ G++ED MA LI AQLLFLE+E+P+K+I
Sbjct: 1   MSVIPMVVEQTARGERSYDIYSRLLKERVIFLGGEVEDRMANLIVAQLLFLESEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           ++YINSPGG VTAGMAIYDTMQF+KP I T C+GQA SMG+ LL+ G  G R ALP+AR+
Sbjct: 61  NIYINSPGGSVTAGMAIYDTMQFVKPDIRTLCVGQACSMGAFLLAGGTAGKRIALPSARV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQASDI+ HAQ+I+KIK+ LNE    + G+T E +E+  DRD+ MSA EA
Sbjct: 121 MIHQPLGGFRGQASDIQIHAQEILKIKQTLNERLAFHTGQTIERIERDTDRDNFMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD+VL SR
Sbjct: 181 KAYGLVDEVLASR 193


>gi|192360657|ref|YP_001982472.1| ATP-dependent Clp protease proteolytic subunit [Cellvibrio
           japonicus Ueda107]
 gi|190686822|gb|ACE84500.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cellvibrio
           japonicus Ueda107]
          Length = 214

 Score =  289 bits (741), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 126/209 (60%), Positives = 163/209 (77%), Gaps = 1/209 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS++   K  S  +  GLVP+V+EQT RGERS+DIYSRLLKER++F+ G +ED+MA L+ 
Sbjct: 1   MSYD-YPKSQSPIINSGLVPIVIEQTARGERSFDIYSRLLKERVIFLVGPVEDYMANLVV 59

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLEAENP K+I LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+ LL+
Sbjct: 60  AQLLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDVSTMCIGQACSMGAFLLN 119

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG +G RF LPN+R+++HQPSGG  GQASDI   AQ+I+KI+ RLNE+   + G+  E +
Sbjct: 120 AGAEGKRFCLPNSRVMIHQPSGGAQGQASDIHIQAQEILKIRARLNELMAHHSGQPIERI 179

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           E   +RD+ MSA +A D+G++D V+  RI
Sbjct: 180 EVDTERDNFMSAQQAKDYGLIDAVVEKRI 208


>gi|295109356|emb|CBL23309.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ruminococcus
           obeum A2-162]
          Length = 193

 Score =  289 bits (741), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 114/193 (59%), Positives = 150/193 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLLK+RI+F+  ++ D  A++I AQLLFLEAE+P K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLKDRIIFLGEEVNDVSASIIVAQLLFLEAEDPSKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMAIYDTM++IK  +ST C+G AASMG+ LL+ G KG R+ALP++ I
Sbjct: 61  QLYINSPGGSVTAGMAIYDTMKYIKCDVSTICLGMAASMGAFLLAGGTKGKRYALPHSTI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I+  A  I + KR LNEI  +N G+ YE VEK  DRD+ M+A EA
Sbjct: 121 MIHQPSGGAQGQATEIQIVADHIAQTKRTLNEILAENTGQPYEVVEKDTDRDNYMTAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D V+  +
Sbjct: 181 KAYGLIDGVVEHK 193


>gi|168186116|ref|ZP_02620751.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum C str. Eklund]
 gi|169296133|gb|EDS78266.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum C str. Eklund]
          Length = 195

 Score =  289 bits (741), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 120/195 (61%), Positives = 155/195 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQTNRGERSYDIYSRLLK+RI+F+  ++ D  A+L+ AQLLFLEAE+P K+I
Sbjct: 1   MSLVPVVVEQTNRGERSYDIYSRLLKDRIIFLGEEVNDVSASLVVAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +TAGMAIYDTMQ+IKP +ST C+G AASMG+ LL+AG KG RFALPN+ I
Sbjct: 61  YLYINSPGGSITAGMAIYDTMQYIKPDVSTICIGMAASMGAFLLTAGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DI  HA  I+KIK +LN+I  +  GK  E ++K ++RD+ M A EA
Sbjct: 121 MIHQPLGGFQGQATDIGIHANRILKIKDKLNKILSERTGKPLEVIKKDVERDNFMEAEEA 180

Query: 196 CDWGVVDKVLMSRID 210
            ++G++D V+ SR  
Sbjct: 181 KEYGLIDDVITSRKK 195


>gi|163781838|ref|ZP_02176838.1| ATP-dependent Clp protease proteolytic subunit [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159883058|gb|EDP76562.1| ATP-dependent Clp protease proteolytic subunit [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 201

 Score =  289 bits (740), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 122/199 (61%), Positives = 162/199 (81%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           D ++V   LVP+V+EQT RGER+YDIYSRLL++RIV +   I+DH+A LI AQLLFLE++
Sbjct: 2   DIKEVTNQLVPIVIEQTPRGERAYDIYSRLLQDRIVLLGFPIDDHVANLIVAQLLFLESQ 61

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           +P K+I LYINSPGG VTAGMA+YDTMQ+IKP + T C+GQAASMG++LL+AG KG R+A
Sbjct: 62  DPDKDIYLYINSPGGSVTAGMAVYDTMQYIKPDVVTICIGQAASMGAVLLAAGAKGKRYA 121

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LP++RI++HQP GG  GQA+DI  HA++I +IKR LNEI  K+ G+  E++EK ++RD+ 
Sbjct: 122 LPHSRIMIHQPLGGIQGQATDIIIHAEEIKRIKRMLNEILAKHTGQDLEKIEKDVERDYF 181

Query: 190 MSASEACDWGVVDKVLMSR 208
           MSA EA D+GV+DKV+  R
Sbjct: 182 MSAEEAKDYGVIDKVIEKR 200


>gi|78066693|ref|YP_369462.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia sp.
           383]
 gi|167586932|ref|ZP_02379320.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           ubonensis Bu]
 gi|90101404|sp|Q39FE8|CLPP_BURS3 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|77967438|gb|ABB08818.1| ATP-dependent Clp protease proteolytic subunit ClpP [Burkholderia
           sp. 383]
          Length = 217

 Score =  289 bits (740), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 121/203 (59%), Positives = 159/203 (78%)

Query: 7   AKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
           A +  E   LGLVP+VVE + RGERSYDIYSRLLKER+VF+ G++ D  A L+ AQLLFL
Sbjct: 15  APQGFEAQALGLVPIVVETSGRGERSYDIYSRLLKERLVFMVGEVNDQTANLVVAQLLFL 74

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E+ENP K+ISLYINSPGG V+AGMAIYDTMQFIKP +ST CMG AASMG+ LL++G KG 
Sbjct: 75  ESENPDKDISLYINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLASGAKGK 134

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           RFALPN+R+++HQP GG  GQASDIE  A++I+ +K RLN++  ++ G+  E + +  DR
Sbjct: 135 RFALPNSRVMIHQPLGGARGQASDIEIQAREILYLKERLNQLLAQHTGQDVERIARDTDR 194

Query: 187 DHIMSASEACDWGVVDKVLMSRI 209
           D+ MS+ +A  +G++D+VL+ R 
Sbjct: 195 DNFMSSEDAKAYGLIDQVLLKRP 217


>gi|15895898|ref|NP_349247.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           acetobutylicum ATCC 824]
 gi|18202304|sp|P58276|CLPP_CLOAB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|15025667|gb|AAK80587.1|AE007761_6 Protease subunits of ATP-dependent protease, ClpP [Clostridium
           acetobutylicum ATCC 824]
 gi|325510050|gb|ADZ21686.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           acetobutylicum EA 2018]
          Length = 193

 Score =  289 bits (740), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 116/192 (60%), Positives = 154/192 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLLK+R++F+  ++ D  A+L+ AQLLFLE+E+P K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLKDRVIFLGEEVNDTTASLVVAQLLFLESEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +T+GMAIYDTMQ++KP +ST C+G AASMGS LL+AG  G RFALPN+ I
Sbjct: 61  YLYINSPGGSITSGMAIYDTMQYVKPDVSTICIGMAASMGSFLLTAGAPGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DI  HAQ I++IK++LN IY +  GK  E +EK  DRDH +SA EA
Sbjct: 121 MIHQPLGGFKGQATDIGIHAQRILEIKKKLNSIYSERTGKPIEVIEKDTDRDHFLSAEEA 180

Query: 196 CDWGVVDKVLMS 207
            ++G++D+V+  
Sbjct: 181 KEYGLIDEVITK 192


>gi|319794078|ref|YP_004155718.1| ATP-dependent clp protease, proteolytic subunit clpp [Variovorax
           paradoxus EPS]
 gi|315596541|gb|ADU37607.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Variovorax
           paradoxus EPS]
          Length = 202

 Score =  289 bits (740), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 119/193 (61%), Positives = 157/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG+VPMVVEQ+ RGERSYDIYSRLLKERIVF+ G++ D  A L+ AQLLFLE+ENP+K+I
Sbjct: 9   LGMVPMVVEQSGRGERSYDIYSRLLKERIVFLVGEVNDQTANLVVAQLLFLESENPEKDI 68

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S YINSPGG V+AGMAIYDTMQFIKP +ST C+G AASMG+ LL+AGEKG RF+LPN+++
Sbjct: 69  SFYINSPGGSVSAGMAIYDTMQFIKPDVSTMCLGFAASMGAFLLAAGEKGKRFSLPNSKV 128

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQ  GG  GQA+DIE HA+DI++ K ++N I  +  G+  E+V+   +RD+ ++A EA
Sbjct: 129 MIHQVLGGARGQATDIEIHARDILRTKDQMNRILAERTGQPLEKVKTDTERDYFLTADEA 188

Query: 196 CDWGVVDKVLMSR 208
            D+G+VD+V+  R
Sbjct: 189 KDYGLVDQVVAKR 201


>gi|60389557|sp|Q6AK59|CLPP_DESPS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
          Length = 203

 Score =  289 bits (740), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 120/197 (60%), Positives = 160/197 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+PMVVEQT RGERSYDIYSRLLKERI+F+   + D +A +I AQLLFLEAE+P+K+I
Sbjct: 1   MNLIPMVVEQTPRGERSYDIYSRLLKERIIFLGSGVNDDVANVIVAQLLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           + YINSPGG VTAGMAIYDTMQ+IK  I+T CMGQAASMG++LL+AG  G R+ALPN+RI
Sbjct: 61  TFYINSPGGSVTAGMAIYDTMQYIKCDIATLCMGQAASMGAVLLAAGTAGKRYALPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DIE H ++I++I++ LN I   + GKT +++E   +RD+ MS+ EA
Sbjct: 121 MIHQPLGGFQGQATDIEIHTKEILRIRKDLNNILAHHTGKTLKKIESDTERDNFMSSVEA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
             +G++D+VL+ R D+E
Sbjct: 181 QKYGLIDEVLVKREDVE 197


>gi|107028898|ref|YP_625993.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           cenocepacia AU 1054]
 gi|115351962|ref|YP_773801.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           ambifaria AMMD]
 gi|116689944|ref|YP_835567.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           cenocepacia HI2424]
 gi|170702050|ref|ZP_02892966.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           ambifaria IOP40-10]
 gi|170733282|ref|YP_001765229.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           cenocepacia MC0-3]
 gi|171320790|ref|ZP_02909797.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           ambifaria MEX-5]
 gi|172060888|ref|YP_001808540.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           ambifaria MC40-6]
 gi|206560359|ref|YP_002231123.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           cenocepacia J2315]
 gi|116243129|sp|Q1BH85|CLPP_BURCA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|122322952|sp|Q0BEF6|CLPP_BURCM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166201802|sp|A0K847|CLPP_BURCH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|105898062|gb|ABF81020.1| ATP-dependent Clp protease proteolytic subunit ClpP [Burkholderia
           cenocepacia AU 1054]
 gi|115281950|gb|ABI87467.1| ATP-dependent Clp protease proteolytic subunit ClpP [Burkholderia
           ambifaria AMMD]
 gi|116648033|gb|ABK08674.1| ATP-dependent Clp protease proteolytic subunit ClpP [Burkholderia
           cenocepacia HI2424]
 gi|169816524|gb|ACA91107.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           cenocepacia MC0-3]
 gi|170133036|gb|EDT01448.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           ambifaria IOP40-10]
 gi|171093960|gb|EDT39074.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           ambifaria MEX-5]
 gi|171993405|gb|ACB64324.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           ambifaria MC40-6]
 gi|198036400|emb|CAR52296.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           cenocepacia J2315]
          Length = 217

 Score =  289 bits (740), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 121/203 (59%), Positives = 158/203 (77%)

Query: 7   AKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
           A +  E   LGLVP+VVE + RGERSYDIYSRLLKER+VF+ G++ D  A L+ AQLLFL
Sbjct: 15  APQGFEAQALGLVPIVVETSGRGERSYDIYSRLLKERLVFMVGEVNDQTANLVVAQLLFL 74

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E+ENP K+ISLYINSPGG V+AGMAIYDTMQFIKP +ST CMG AASMG+ LL++G KG 
Sbjct: 75  ESENPDKDISLYINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLASGAKGK 134

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           RFALPN+R+++HQP GG  GQASDIE  A++I+ +K RLN +  ++ G+  E + +  DR
Sbjct: 135 RFALPNSRVMIHQPLGGARGQASDIEIQAREILYLKERLNNLLAQHTGQDVERIARDTDR 194

Query: 187 DHIMSASEACDWGVVDKVLMSRI 209
           D+ MS+ +A  +G++D+VL+ R 
Sbjct: 195 DNFMSSEDAKAYGLIDQVLLKRP 217


>gi|330829918|ref|YP_004392870.1| ATP-dependent Clp protease proteolytic subunit [Aeromonas veronii
           B565]
 gi|328805054|gb|AEB50253.1| ATP-dependent Clp protease proteolytic subunit [Aeromonas veronii
           B565]
          Length = 207

 Score =  289 bits (740), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 126/199 (63%), Positives = 156/199 (78%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
            ++     LVP+VVEQT +GERSYDIYSRLLKER++F+TGQ+EDHMA L+ AQLLFLE+E
Sbjct: 8   MTDSPSNALVPIVVEQTAKGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESE 67

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP K+I +YINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+ G KG RF 
Sbjct: 68  NPDKDIYIYINSPGGSVTAGMSIYDTMQFIKPDVSTVCMGQACSMGAFLLAGGAKGKRFC 127

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPNAR+++HQP GGF GQASDI+ HAQ+I+KIK  LNE    + G+    +E+  DRD+ 
Sbjct: 128 LPNARVMIHQPLGGFQGQASDIQIHAQEILKIKNTLNERLAFHTGQDMATIERDTDRDNF 187

Query: 190 MSASEACDWGVVDKVLMSR 208
           MSA +A  +G+VD VL  R
Sbjct: 188 MSAEQAVAYGLVDGVLSQR 206


>gi|312113123|ref|YP_004010719.1| endopeptidase Clp [Rhodomicrobium vannielii ATCC 17100]
 gi|311218252|gb|ADP69620.1| Endopeptidase Clp [Rhodomicrobium vannielii ATCC 17100]
          Length = 214

 Score =  289 bits (740), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 142/206 (68%), Positives = 179/206 (86%), Gaps = 1/206 (0%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           +D  + +   LVPMVVEQTNRGER++DIYSRLLKERI+F+TG +ED+MA+L+ AQLLFLE
Sbjct: 2   RDPVEFYTSQLVPMVVEQTNRGERAFDIYSRLLKERIIFLTGVVEDNMASLVIAQLLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           +ENP+KEI++YINSPGG VT+G+A+YDTMQFI+PP+ST C+GQAASMGSLLL+AGE GMR
Sbjct: 62  SENPKKEINIYINSPGGHVTSGLAMYDTMQFIRPPVSTLCVGQAASMGSLLLAAGEPGMR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           +ALPNAR+++HQPS GF GQASDIERHA+DI+K KRRLNEIYVK+ G+ YE +E+TLDRD
Sbjct: 122 WALPNARVMVHQPSAGFQGQASDIERHAEDILKTKRRLNEIYVKHTGQPYEVIERTLDRD 181

Query: 188 HIMSASEACDWGVVDKVLMSRIDIEE 213
           H MS  +A  +G++D+VL  R   EE
Sbjct: 182 HFMSPEQAKAFGIIDEVLTKRAAAEE 207


>gi|118444381|ref|YP_878863.1| ATP-dependent Clp protease proteolytic subunit [Clostridium novyi
           NT]
 gi|166201817|sp|A0Q2L1|CLPP_CLONN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|118134837|gb|ABK61881.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           novyi NT]
          Length = 195

 Score =  289 bits (740), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 119/195 (61%), Positives = 154/195 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQTNRGERSYDIYSRLLK+RI+F+  ++ D  A+L+ AQLLFLEAE+P K+I
Sbjct: 1   MSLVPVVVEQTNRGERSYDIYSRLLKDRIIFLGEEVNDVTASLVVAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +TAGMAIYDTMQ+IKP +ST C+G AASMG+ LL+AG KG RFALPN+ I
Sbjct: 61  YLYINSPGGSITAGMAIYDTMQYIKPDVSTICIGMAASMGAFLLTAGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DI  HA  I+KIK +LN I  +  G+  E ++K ++RD+ M A EA
Sbjct: 121 MIHQPLGGFQGQATDIGIHANRILKIKDKLNSILSERTGQPLEVIKKDVERDNFMEAEEA 180

Query: 196 CDWGVVDKVLMSRID 210
            ++G++D V+ SR  
Sbjct: 181 KEYGLIDDVITSRKK 195


>gi|187477999|ref|YP_786023.1| ATP-dependent Clp protease proteolytic subunit [Bordetella avium
           197N]
 gi|115422585|emb|CAJ49110.1| ATP-dependent Clp protease proteolytic subunit [Bordetella avium
           197N]
          Length = 217

 Score =  289 bits (740), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 117/196 (59%), Positives = 153/196 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG +PMVVEQ+ RGER+YDIYSRLL+ER++F+ G + D  A L+ AQLLFLE+ENP K+I
Sbjct: 22  LGYIPMVVEQSGRGERAYDIYSRLLRERLIFLVGPVNDATANLVVAQLLFLESENPDKDI 81

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S YINSPGG V AGMAI+DTMQF+KP +ST C G AASMG+ LL+AG+KG RF+LPN+RI
Sbjct: 82  SFYINSPGGSVYAGMAIFDTMQFVKPDVSTLCTGLAASMGAFLLAAGKKGKRFSLPNSRI 141

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQASDI+  A++I+ ++ RLN I  +N G++ E +    +RD  MSA +A
Sbjct: 142 MIHQPSGGAQGQASDIQIQAKEILDLRERLNRILAENTGQSMERIAIDTERDTFMSAEDA 201

Query: 196 CDWGVVDKVLMSRIDI 211
             +G+VDKVL  R D+
Sbjct: 202 LSYGLVDKVLARREDV 217


>gi|3318853|pdb|1TYF|A Chain A, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 gi|3318854|pdb|1TYF|B Chain B, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 gi|3318855|pdb|1TYF|C Chain C, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 gi|3318856|pdb|1TYF|D Chain D, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 gi|3318857|pdb|1TYF|E Chain E, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 gi|3318858|pdb|1TYF|F Chain F, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 gi|3318859|pdb|1TYF|G Chain G, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 gi|3318860|pdb|1TYF|H Chain H, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 gi|3318861|pdb|1TYF|I Chain I, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 gi|3318862|pdb|1TYF|J Chain J, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 gi|3318863|pdb|1TYF|K Chain K, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 gi|3318864|pdb|1TYF|L Chain L, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 gi|3318865|pdb|1TYF|M Chain M, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 gi|3318866|pdb|1TYF|N Chain N, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
           A Model For Atp-Dependent Proteolysis
 gi|93278456|pdb|1YG6|A Chain A, Clpp
 gi|93278457|pdb|1YG6|B Chain B, Clpp
 gi|93278458|pdb|1YG6|C Chain C, Clpp
 gi|93278459|pdb|1YG6|D Chain D, Clpp
 gi|93278460|pdb|1YG6|E Chain E, Clpp
 gi|93278461|pdb|1YG6|F Chain F, Clpp
 gi|93278462|pdb|1YG6|G Chain G, Clpp
 gi|93278463|pdb|1YG6|H Chain H, Clpp
 gi|93278464|pdb|1YG6|I Chain I, Clpp
 gi|93278465|pdb|1YG6|J Chain J, Clpp
 gi|93278466|pdb|1YG6|K Chain K, Clpp
 gi|93278467|pdb|1YG6|L Chain L, Clpp
 gi|93278468|pdb|1YG6|M Chain M, Clpp
 gi|93278469|pdb|1YG6|N Chain N, Clpp
 gi|109157730|pdb|2FZS|A Chain A, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 gi|109157731|pdb|2FZS|B Chain B, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 gi|109157732|pdb|2FZS|C Chain C, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 gi|109157733|pdb|2FZS|D Chain D, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 gi|109157734|pdb|2FZS|E Chain E, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 gi|109157735|pdb|2FZS|F Chain F, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 gi|109157736|pdb|2FZS|G Chain G, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 gi|109157737|pdb|2FZS|H Chain H, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 gi|109157738|pdb|2FZS|I Chain I, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 gi|109157739|pdb|2FZS|J Chain J, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 gi|109157740|pdb|2FZS|K Chain K, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 gi|109157741|pdb|2FZS|L Chain L, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 gi|109157742|pdb|2FZS|M Chain M, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
 gi|109157743|pdb|2FZS|N Chain N, Crystal Structure Of E. Coli Clpp With A Peptide
           Chloromethyl Ketone Covalently Bound At The Active Site
          Length = 193

 Score =  289 bits (740), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 125/192 (65%), Positives = 164/192 (85%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI AQ+LFLEAENP+K+I 
Sbjct: 1   ALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIY 60

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+AG KG RF LPN+R++
Sbjct: 61  LYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVM 120

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG+ GQA+DIE HA++I+K+K R+NE+   + G++ E++E+  +RD  +SA EA 
Sbjct: 121 IHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAV 180

Query: 197 DWGVVDKVLMSR 208
           ++G+VD +L  R
Sbjct: 181 EYGLVDSILTHR 192


>gi|15888588|ref|NP_354269.1| ATP-dependent Clp protease proteolytic subunit [Agrobacterium
           tumefaciens str. C58]
 gi|21759066|sp|Q8UFY6|CLPP2_AGRT5 RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|15156306|gb|AAK87054.1| ATP-dependent Clp protease, proteolytic subunit [Agrobacterium
           tumefaciens str. C58]
          Length = 210

 Score =  289 bits (740), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 159/204 (77%), Positives = 185/204 (90%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           K+  D  + LVPMVVEQTNRGERSYDI+SRLLKERI+F+TG +ED MA+L+CAQLLFLEA
Sbjct: 2   KNPVDTAMALVPMVVEQTNRGERSYDIFSRLLKERIIFLTGPVEDQMASLVCAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI+LYINSPGGVVTAGMAIYDTMQFI+P +ST C+GQAASMGSLLL+AGEKGMRF
Sbjct: 62  ENPKKEIALYINSPGGVVTAGMAIYDTMQFIRPAVSTLCVGQAASMGSLLLAAGEKGMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           A PNARI++HQPSGGF GQASDIERHA+DI+K+KRRLNE+YVK+ G+T EEVEKTLDRDH
Sbjct: 122 ATPNARIMVHQPSGGFQGQASDIERHARDIIKMKRRLNEVYVKHTGRTLEEVEKTLDRDH 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIE 212
            M A EA DWGV+DK+L SR ++E
Sbjct: 182 FMDADEAKDWGVIDKILTSRQEME 205


>gi|114152202|sp|Q2L256|CLPP_BORA1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
          Length = 201

 Score =  289 bits (740), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 117/196 (59%), Positives = 153/196 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG +PMVVEQ+ RGER+YDIYSRLL+ER++F+ G + D  A L+ AQLLFLE+ENP K+I
Sbjct: 6   LGYIPMVVEQSGRGERAYDIYSRLLRERLIFLVGPVNDATANLVVAQLLFLESENPDKDI 65

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S YINSPGG V AGMAI+DTMQF+KP +ST C G AASMG+ LL+AG+KG RF+LPN+RI
Sbjct: 66  SFYINSPGGSVYAGMAIFDTMQFVKPDVSTLCTGLAASMGAFLLAAGKKGKRFSLPNSRI 125

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQASDI+  A++I+ ++ RLN I  +N G++ E +    +RD  MSA +A
Sbjct: 126 MIHQPSGGAQGQASDIQIQAKEILDLRERLNRILAENTGQSMERIAIDTERDTFMSAEDA 185

Query: 196 CDWGVVDKVLMSRIDI 211
             +G+VDKVL  R D+
Sbjct: 186 LSYGLVDKVLARREDV 201


>gi|294635324|ref|ZP_06713821.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Edwardsiella
           tarda ATCC 23685]
 gi|291091300|gb|EFE23861.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Edwardsiella
           tarda ATCC 23685]
          Length = 194

 Score =  289 bits (739), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 130/194 (67%), Positives = 161/194 (82%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT+RGERSYDI+SRLLKERI+F+TGQ+EDHMA LI AQ+LFLEAENP+K+I
Sbjct: 1   MALVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAENPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMGS LL+AG +G RF LPN+R+
Sbjct: 61  HLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGSFLLAAGAQGKRFCLPNSRV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DIE HA++I+ IK R+N +  K+ G+  E +E+  +RD  MSA EA
Sbjct: 121 MIHQPLGGFQGQATDIEIHAKEILSIKARMNTLMAKHSGQPLEVIERDTERDRFMSAQEA 180

Query: 196 CDWGVVDKVLMSRI 209
            D+G+VD VL  R 
Sbjct: 181 VDYGLVDAVLTQRA 194


>gi|284006421|emb|CBA71657.1| ATP-dependent Clp protease proteolytic subunit [Arsenophonus
           nasoniae]
          Length = 209

 Score =  289 bits (739), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 131/208 (62%), Positives = 165/208 (79%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           M       +D     + LVPMV+EQT+RGERSYDIYSRLLKERI+F+TGQ+EDHMA L+ 
Sbjct: 1   MEMSYHNNQDQLAPHMALVPMVIEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLVV 60

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 61  AQMLFLEAENPDKDIHLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLT 120

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG R+ LPN+R+++HQP GGF GQASDIE HA++I+KIK R+NE+  K+ GK  +EV
Sbjct: 121 AGAKGKRYCLPNSRVMIHQPLGGFQGQASDIEIHAKEILKIKSRMNELMAKHTGKKIKEV 180

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E   +RD  ++A EA  +G+VDK+  +R
Sbjct: 181 ENDTERDRFLTAEEAVSYGLVDKIYTNR 208


>gi|317405213|gb|EFV85552.1| ATP-dependent Clp protease proteolytic subunit [Achromobacter
           xylosoxidans C54]
          Length = 217

 Score =  289 bits (739), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 116/195 (59%), Positives = 153/195 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG +PMV+EQ+ RGER+YDIYSRLL+ER++F+ G + D  A L+ AQLLFLE+ENP K+I
Sbjct: 22  LGYIPMVIEQSGRGERAYDIYSRLLRERLIFLVGPVNDATANLVVAQLLFLESENPDKDI 81

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG V AGMAIYDTMQF+KP +ST C G AASMG+ LL+AG+KG RF LPN+RI
Sbjct: 82  SLYINSPGGSVYAGMAIYDTMQFVKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRI 141

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQASDI+  A++I+ ++ RLN I   N G++ + +    +RD+ MSA +A
Sbjct: 142 MIHQPSGGAQGQASDIQIQAREILDLRERLNRILADNTGQSIDRIALDTERDNFMSAEDA 201

Query: 196 CDWGVVDKVLMSRID 210
             +G+VDKV+ SR +
Sbjct: 202 VSYGLVDKVMTSRSE 216


>gi|254282219|ref|ZP_04957187.1| ATP-dependent Clp protease, proteolytic subunit ClpP [gamma
           proteobacterium NOR51-B]
 gi|219678422|gb|EED34771.1| ATP-dependent Clp protease, proteolytic subunit ClpP [gamma
           proteobacterium NOR51-B]
          Length = 220

 Score =  289 bits (739), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 122/199 (61%), Positives = 160/199 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LGLVPMV+EQT+RGERS+DIYSRLLKER++FV G IEDHMA LI AQLLFLE+ENP K+I
Sbjct: 22  LGLVPMVIEQTSRGERSFDIYSRLLKERVIFVVGGIEDHMANLIVAQLLFLESENPDKDI 81

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG VTAG++IYDTMQF+KP +ST C+GQAASMG+ LLS G KG R+ LPNAR 
Sbjct: 82  HIYINSPGGSVTAGLSIYDTMQFVKPDVSTMCIGQAASMGAFLLSGGAKGKRYILPNART 141

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQASDIE  A++I+ ++ RLN +   + G+T E +E+  +RD  MSA ++
Sbjct: 142 MIHQPSGGAQGQASDIEIQAKEILYLRERLNRLMADHTGQTLETIERDTERDRFMSAEQS 201

Query: 196 CDWGVVDKVLMSRIDIEEK 214
            ++G+VD+V+ +R+   + 
Sbjct: 202 VEYGLVDEVVENRVAAPDA 220


>gi|33151467|ref|NP_872820.1| ATP-dependent Clp protease proteolytic subunit ClpP [Haemophilus
           ducreyi 35000HP]
 gi|60389738|sp|Q7VP78|CLPP_HAEDU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|33147687|gb|AAP95209.1| ATP-dependent Clp protease proteolytic subunit ClpP [Haemophilus
           ducreyi 35000HP]
          Length = 197

 Score =  289 bits (739), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 122/196 (62%), Positives = 161/196 (82%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++PMVVEQT++GERSYDIYSRLLKERI+F+ G++EDHMA LI AQLLFLEAE+P+K+I
Sbjct: 1   MAVIPMVVEQTSKGERSYDIYSRLLKERIIFLNGEVEDHMANLIVAQLLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVTAG+AIYDTM FIKP ++T C GQA SMG+ LLS G+KG RFALPNAR+
Sbjct: 61  YLYINSPGGVVTAGLAIYDTMNFIKPDVATLCTGQACSMGAFLLSGGKKGKRFALPNARV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+  AQ+I+K+K  L     ++ G+T+ +V    +RD+ MSA+EA
Sbjct: 121 MIHQPLGGARGQATDIQIQAQEILKLKEMLTRKMAEHSGQTFAKVAADTERDNFMSATEA 180

Query: 196 CDWGVVDKVLMSRIDI 211
            ++G++DKVL SR ++
Sbjct: 181 KNYGLIDKVLTSRGEV 196


>gi|253575671|ref|ZP_04853007.1| clp protease [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251845009|gb|EES73021.1| clp protease [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 196

 Score =  289 bits (739), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 118/196 (60%), Positives = 157/196 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQTNRGERSYDIYSRLLK+RI+F++  I+D +A L+ AQLLFL AE+P+K+I
Sbjct: 1   MSLVPMVVEQTNRGERSYDIYSRLLKDRIIFLSNAIDDEVANLVIAQLLFLAAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGM IYDTMQ+IKP +ST C+G AASMGSLLL+AG  G R+ALPN+ +
Sbjct: 61  HLYINSPGGSVTAGMGIYDTMQYIKPDVSTICVGMAASMGSLLLTAGAPGKRYALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+ HA  I+K +++LN+IYV+  G+  E++E+  DRD  MSA EA
Sbjct: 121 MIHQPLGGVRGQATDIKIHADWIIKTRQKLNQIYVERTGQPLEKIERDTDRDFFMSAEEA 180

Query: 196 CDWGVVDKVLMSRIDI 211
             +G++D+V+    ++
Sbjct: 181 KAYGIIDQVISKPTNL 196


>gi|153871192|ref|ZP_02000426.1| Peptidase S14, ClpP [Beggiatoa sp. PS]
 gi|152072341|gb|EDN69573.1| Peptidase S14, ClpP [Beggiatoa sp. PS]
          Length = 228

 Score =  289 bits (739), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 123/213 (57%), Positives = 166/213 (77%), Gaps = 5/213 (2%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +  E    GLVPMVVEQ+ RGER+YDIYSRLLKER++F+ G +ED+ A L+ AQLLFLE+
Sbjct: 13  QSDERAVGGLVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYTANLVVAQLLFLES 72

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+K+I LYINSPGG V+AG+AIYDTMQFIKP +ST C+GQAASMG+LLLS G    R+
Sbjct: 73  ENPEKDIHLYINSPGGSVSAGLAIYDTMQFIKPDVSTLCIGQAASMGALLLSGGADKKRY 132

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
            LP++RI++HQP GGF GQA+DI+ HA++I+K++ RLNEI  K+ G+  E+++K  +RD+
Sbjct: 133 CLPHSRIMIHQPLGGFQGQATDIDIHAREILKVRERLNEILAKHSGQPLEKIQKDTERDN 192

Query: 189 IMSASEACDWGVVDKVLMSR-----IDIEEKSK 216
            M+A  A ++G+VD VL +R        EE++K
Sbjct: 193 FMAAETAVEYGLVDAVLSTRHALTAAATEEQTK 225


>gi|312128165|ref|YP_003993039.1| ATP-dependent clp protease, proteolytic subunit clpp
           [Caldicellulosiruptor hydrothermalis 108]
 gi|312134617|ref|YP_004001955.1| ATP-dependent clp protease, proteolytic subunit clpp
           [Caldicellulosiruptor owensensis OL]
 gi|312792981|ref|YP_004025904.1| ATP-dependent clp protease, proteolytic subunit clpp
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312876447|ref|ZP_07736431.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311774668|gb|ADQ04155.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Caldicellulosiruptor owensensis OL]
 gi|311778184|gb|ADQ07670.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311796805|gb|EFR13150.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|312180121|gb|ADQ40291.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 195

 Score =  289 bits (739), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 120/195 (61%), Positives = 154/195 (78%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
              LVP+V+EQTNRGER+YDIYSRLLK+RIV ++G+I D +A+LI AQLLFLEAE+P K+
Sbjct: 1   MSALVPIVIEQTNRGERAYDIYSRLLKDRIVILSGEITDDIASLIVAQLLFLEAEDPDKD 60

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I LYINSPGG VTAG AIYDTMQ+IKP +ST C+G AASMG+ LL+AG KG RFALPN+ 
Sbjct: 61  IYLYINSPGGSVTAGFAIYDTMQYIKPDVSTICVGMAASMGAFLLAAGAKGKRFALPNSE 120

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQP GG  GQA+DI+ HA+ I+KIK R+N+I  +  G+  E +E+  DRD  M+A E
Sbjct: 121 IMIHQPLGGVRGQATDIKIHAEWILKIKNRINKILSERTGQPIEVIERDTDRDFFMTAEE 180

Query: 195 ACDWGVVDKVLMSRI 209
           A  +G++DKV+  R 
Sbjct: 181 ALKYGIIDKVIERRP 195


>gi|319784104|ref|YP_004143580.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
 gi|317169992|gb|ADV13530.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
          Length = 209

 Score =  289 bits (739), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 154/204 (75%), Positives = 183/204 (89%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           K+  + ++ LVPMVVEQTNRGER+YDI+SRLLKERI+F+TG +ED MATL+CAQLLFLEA
Sbjct: 2   KNPVETYMNLVPMVVEQTNRGERAYDIFSRLLKERIIFITGPVEDGMATLVCAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI+LYINSPGGVVT+GMAIYDTMQFIKP +ST C+GQAASMGSLLL+AG K MRF
Sbjct: 62  ENPKKEINLYINSPGGVVTSGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLTAGHKDMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           A PNARI++HQPSGGF GQASDIERHA DI+K+KRRLNE+YVK+ GK+YEE+EKTLDRDH
Sbjct: 122 ATPNARIMVHQPSGGFQGQASDIERHALDIIKLKRRLNEVYVKHTGKSYEEIEKTLDRDH 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIE 212
            M+A EA D+G++DKV+ SR   E
Sbjct: 182 FMTADEAKDFGLIDKVISSREAAE 205


>gi|325292625|ref|YP_004278489.1| ATP-dependent Clp protease, proteolytic subunit [Agrobacterium sp.
           H13-3]
 gi|325060478|gb|ADY64169.1| ATP-dependent Clp protease, proteolytic subunit [Agrobacterium sp.
           H13-3]
          Length = 210

 Score =  289 bits (739), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 159/204 (77%), Positives = 185/204 (90%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           K+  D  + LVPMVVEQTNRGERSYDI+SRLLKERI+F+TG +ED MA+L+CAQLLFLEA
Sbjct: 2   KNPVDTAMALVPMVVEQTNRGERSYDIFSRLLKERIIFLTGPVEDQMASLVCAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI+LYINSPGGVVTAGMAIYDTMQFI+P +ST C+GQAASMGSLLL+AGEKGMRF
Sbjct: 62  ENPKKEIALYINSPGGVVTAGMAIYDTMQFIRPAVSTLCVGQAASMGSLLLAAGEKGMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           A PNARI++HQPSGGF GQASDIERHA+DI+K+KRRLNE+YVK+ G+T EEVEKTLDRDH
Sbjct: 122 ATPNARIMVHQPSGGFQGQASDIERHARDIIKMKRRLNEVYVKHTGRTLEEVEKTLDRDH 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIE 212
            M A EA DWGV+DK+L SR ++E
Sbjct: 182 FMDADEAKDWGVIDKILTSRQEME 205


>gi|261855007|ref|YP_003262290.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Halothiobacillus neapolitanus c2]
 gi|261835476|gb|ACX95243.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Halothiobacillus neapolitanus c2]
          Length = 210

 Score =  289 bits (739), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 132/199 (66%), Positives = 161/199 (80%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
           S      LVPMVVEQT+RGER+YDIYSRLLKER+VFV G IEDHMA LI AQLLFLE+EN
Sbjct: 12  SSPELAALVPMVVEQTSRGERAYDIYSRLLKERVVFVVGPIEDHMANLIVAQLLFLESEN 71

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
           P K+I LYINSPGGVVTAGM+IYDTMQFIKP +ST C+GQAASMGS+LLS GE G RFAL
Sbjct: 72  PDKDIHLYINSPGGVVTAGMSIYDTMQFIKPHVSTLCIGQAASMGSILLSGGEPGKRFAL 131

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           PN+R+++HQP GGF GQASDI+ HA++I+K++  LN +  K+C +  E +E+  DRD  +
Sbjct: 132 PNSRVMIHQPLGGFQGQASDIKIHAEEIIKLRHSLNGVLAKHCNQPMEVIERDTDRDKFL 191

Query: 191 SASEACDWGVVDKVLMSRI 209
           SASEA ++G++D VL  R 
Sbjct: 192 SASEAVEYGLIDAVLDKRA 210


>gi|212709197|ref|ZP_03317325.1| hypothetical protein PROVALCAL_00230 [Providencia alcalifaciens DSM
           30120]
 gi|212688109|gb|EEB47637.1| hypothetical protein PROVALCAL_00230 [Providencia alcalifaciens DSM
           30120]
          Length = 206

 Score =  289 bits (739), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 128/193 (66%), Positives = 165/193 (85%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMV+EQT+RGERSYDIYSRLLKERI+F+TGQ+EDHMA LI AQ+LFLEAENP+K+I
Sbjct: 14  MALVPMVIEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAENPEKDI 73

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+AG KG RF LPN+R+
Sbjct: 74  QLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLTAGTKGKRFCLPNSRV 133

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG+ GQA+DIE HAQ+I+K+K R+NE+  ++ GK+ EE+ +  +RD  +SA+EA
Sbjct: 134 MIHQPLGGYQGQATDIEIHAQEILKVKSRMNELMAQHTGKSIEEISRDTERDRFLSANEA 193

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD +  SR
Sbjct: 194 KEYGLVDHIYTSR 206


>gi|222148264|ref|YP_002549221.1| ATP-dependent Clp protease proteolytic subunit [Agrobacterium vitis
           S4]
 gi|221735252|gb|ACM36215.1| ATP-dependent Clp protease proteolytic subunit ClpP [Agrobacterium
           vitis S4]
          Length = 210

 Score =  289 bits (739), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 156/204 (76%), Positives = 186/204 (91%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           ++  D  + LVPMVVEQTNRGERSYDIYSRLLKERI+F+TG +EDHMA+L+CAQLLFLEA
Sbjct: 2   RNPVDTAMALVPMVVEQTNRGERSYDIYSRLLKERIIFLTGPVEDHMASLVCAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI++YINSPGGVVTAGMAIYDTMQFI+P +ST C+GQAASMGSLLL+AGEKGMRF
Sbjct: 62  ENPKKEIAIYINSPGGVVTAGMAIYDTMQFIRPAVSTLCVGQAASMGSLLLAAGEKGMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           A PNARI++HQPSGGF GQASDIERHA+DI+K+KRRLNE+YVK+ G+T EEVE TLDRDH
Sbjct: 122 ATPNARIMVHQPSGGFQGQASDIERHARDIIKMKRRLNEVYVKHTGRTLEEVEHTLDRDH 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIE 212
            M ++EA DWG++DK+L +R +IE
Sbjct: 182 FMESTEAKDWGLIDKILTTRSEIE 205


>gi|260913095|ref|ZP_05919577.1| ATP-dependent Clp protease [Pasteurella dagmatis ATCC 43325]
 gi|260632682|gb|EEX50851.1| ATP-dependent Clp protease [Pasteurella dagmatis ATCC 43325]
          Length = 193

 Score =  289 bits (739), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 124/193 (64%), Positives = 160/193 (82%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++PMVVEQT+RGERSYDIYSRLLKER++F++G++ED MA LI AQLLFLE+E+P+K+I
Sbjct: 1   MSVIPMVVEQTSRGERSYDIYSRLLKERVIFLSGEVEDRMANLIVAQLLFLESEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           ++YINSPGG VTAGMAIYDTMQFIKP I T C+GQA SMG+ LL+ G  G R ALPNAR+
Sbjct: 61  NIYINSPGGSVTAGMAIYDTMQFIKPDIRTLCVGQACSMGAFLLAGGTAGKRIALPNARV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQASDI+ HAQ+I+KIK+ LNE    + G++ E +E+  DRD+ MSA EA
Sbjct: 121 MIHQPLGGFRGQASDIQIHAQEILKIKQTLNERLAFHTGQSIERIERDTDRDNFMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD+VL+ R
Sbjct: 181 KAYGLVDEVLVKR 193


>gi|169831635|ref|YP_001717617.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638479|gb|ACA59985.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 198

 Score =  288 bits (738), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 118/196 (60%), Positives = 157/196 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVP+VVEQT RGER+YDIYSRLLK+RIVF+ G IEDH+A LI AQLLFLEAE+P K+I 
Sbjct: 3   TLVPIVVEQTARGERAYDIYSRLLKDRIVFIGGPIEDHVANLIIAQLLFLEAEDPDKDIH 62

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG+VT+GMAIYDTMQ+I+P +ST C+GQAAS G+ LL+AG  G RFALP ARI+
Sbjct: 63  LYINSPGGLVTSGMAIYDTMQYIRPDVSTICLGQAASFGAFLLAAGTPGKRFALPYARIM 122

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA++I+ HA++I++ KR LNE+  K+ G+  E++E+  +RD  MS  +A 
Sbjct: 123 MHQPLGGVQGQATEIDIHAREILRTKRVLNELLAKHTGQPVEKIERDTERDFFMSPEQAR 182

Query: 197 DWGVVDKVLMSRIDIE 212
           ++G++D+V+  R   +
Sbjct: 183 EYGIIDEVITVRKKAK 198


>gi|156935010|ref|YP_001438926.1| hypothetical protein ESA_02861 [Cronobacter sakazakii ATCC BAA-894]
 gi|156533264|gb|ABU78090.1| hypothetical protein ESA_02861 [Cronobacter sakazakii ATCC BAA-894]
          Length = 194

 Score =  288 bits (738), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 124/193 (64%), Positives = 164/193 (84%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT+RGERSYDI+SRLLKERI+F+TGQ+ED MA LI AQ+LFLEAENP+K+I
Sbjct: 1   MALVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDQMANLIVAQMLFLEAENPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+TAGM+IYDTMQFI+P +ST CMGQAASMG+ LL+AG KG RF LPN+R+
Sbjct: 61  YLYINSPGGVITAGMSIYDTMQFIQPDVSTICMGQAASMGAFLLTAGTKGKRFCLPNSRV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG+ GQA+DIE HA++I+K+K R+NE+  ++ G+  E++E+  +RD  +SA EA
Sbjct: 121 MIHQPLGGYQGQATDIEIHAREILKVKARMNELMAQHTGQPLEQIERDTERDRFLSAGEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD ++  R
Sbjct: 181 VEYGLVDSIMTHR 193


>gi|77459919|ref|YP_349426.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           fluorescens Pf0-1]
 gi|92087005|sp|Q3K9W9|CLPP_PSEPF RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|77383922|gb|ABA75435.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pseudomonas
           fluorescens Pf0-1]
          Length = 211

 Score =  288 bits (738), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 125/193 (64%), Positives = 159/193 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMVVEQ+ RGER+YDIYSRLLKER++F+ G +ED+MA LICAQLLFLEAENP K+I 
Sbjct: 18  GLVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIH 77

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+ LL+AG  G RF LPN+R++
Sbjct: 78  LYINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGAFLLTAGAPGKRFCLPNSRVM 137

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+ I+ RLN +  K+ G+T EE+E+  +RD+ MSA  A 
Sbjct: 138 IHQPLGGFQGQASDIEIHAKEILFIRERLNTLMAKHSGRTLEEIERDTNRDNFMSAEAAK 197

Query: 197 DWGVVDKVLMSRI 209
           ++G++D+V+  R 
Sbjct: 198 EYGLIDEVINQRP 210


>gi|225573066|ref|ZP_03781821.1| hypothetical protein RUMHYD_01257 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039572|gb|EEG49818.1| hypothetical protein RUMHYD_01257 [Blautia hydrogenotrophica DSM
           10507]
          Length = 193

 Score =  288 bits (738), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 115/193 (59%), Positives = 146/193 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP VVEQT+RGER+YDIYSRLLK+RI+F+  ++ D  A+L+ AQLLFLE+E+  K+I
Sbjct: 1   MSLVPYVVEQTSRGERNYDIYSRLLKDRIIFLGEEVNDVTASLVVAQLLFLESEDAGKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMAIYDTMQ+IK  +ST C+G AASMG+ LL+ G KG R ALPN+ I
Sbjct: 61  QLYINSPGGSVTAGMAIYDTMQYIKCDVSTICLGLAASMGAFLLAGGAKGKRIALPNSTI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I+  A  I K KR LNEI   N G+  E VE   DRD+ MSA EA
Sbjct: 121 MIHQPSGGAQGQATEIQIVADHIAKTKRTLNEILAANTGQPLEVVEVDTDRDNYMSAQEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++DK++  R
Sbjct: 181 QAYGLIDKIITHR 193


>gi|118594831|ref|ZP_01552178.1| Peptidase S14, ClpP [Methylophilales bacterium HTCC2181]
 gi|118440609|gb|EAV47236.1| Peptidase S14, ClpP [Methylophilales bacterium HTCC2181]
          Length = 209

 Score =  288 bits (738), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 127/197 (64%), Positives = 164/197 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG +PMVVEQ+ RGERSYDIYSRLLKER+VF+ G ++D  A ++ AQLLFLEAENP K+I
Sbjct: 13  LGYIPMVVEQSGRGERSYDIYSRLLKERVVFLVGPVDDMTANVVVAQLLFLEAENPDKDI 72

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG VTAGMAIYDTMQFIKP IST C+GQAASMG+LLL+AG    RF+LPN+R+
Sbjct: 73  SLYINSPGGSVTAGMAIYDTMQFIKPDISTLCIGQAASMGALLLTAGAAKKRFSLPNSRV 132

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQASDIE HA++I+ +K +LN+I  ++ G++ E+V K  DRD+ MSA +A
Sbjct: 133 MIHQPLGGFQGQASDIEIHAKEILYLKEKLNKIMAEHSGQSLEKVSKDTDRDNFMSAKDA 192

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G++DKV+ SR D++
Sbjct: 193 MEYGLIDKVISSRSDVK 209


>gi|292493106|ref|YP_003528545.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nitrosococcus
           halophilus Nc4]
 gi|291581701|gb|ADE16158.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nitrosococcus
           halophilus Nc4]
          Length = 203

 Score =  288 bits (738), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 121/199 (60%), Positives = 159/199 (79%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
           D    LVPMVVEQT RGER+YDIYSRLLKER+VF+ G +EDHMA L+ AQLLFLE+ENP 
Sbjct: 3   DSLNTLVPMVVEQTARGERAYDIYSRLLKERVVFLVGPVEDHMANLVVAQLLFLESENPD 62

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K+I LYINSPGG VTAG+++YDTMQFIKP IST C+GQAASMG++LL+ G +G R  LP+
Sbjct: 63  KDIHLYINSPGGSVTAGLSVYDTMQFIKPDISTLCIGQAASMGAVLLAGGTQGKRHCLPH 122

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           +R+L+HQP GGF GQA+DI+ HA++I+ ++ RLN I  K+ G+  E++++  DRD+ MSA
Sbjct: 123 SRLLIHQPLGGFQGQAADIDIHAREIMLVRERLNHILAKHTGQPIEKIQRDTDRDYFMSA 182

Query: 193 SEACDWGVVDKVLMSRIDI 211
           +E+  +G+VD VL  R + 
Sbjct: 183 NESVAYGLVDSVLQQRGET 201


>gi|326795825|ref|YP_004313645.1| ATP-dependent Clp protease proteolytic subunit [Marinomonas
           mediterranea MMB-1]
 gi|326546589|gb|ADZ91809.1| ATP-dependent Clp protease proteolytic subunit [Marinomonas
           mediterranea MMB-1]
          Length = 210

 Score =  288 bits (738), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 122/193 (63%), Positives = 157/193 (81%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+EQT RGERS+DIYSRLLKER++F+ GQ+EDHMA L+ AQLLFLE+ENP K+I 
Sbjct: 17  GLVPMVIEQTARGERSFDIYSRLLKERVIFLVGQVEDHMANLVVAQLLFLESENPDKDIH 76

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQAASMG+LLL+AG  G R+ LPN+R++
Sbjct: 77  LYINSPGGSVTAGMSIYDTMQFIKPDVSTMCIGQAASMGALLLTAGAAGKRYCLPNSRVM 136

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG+ GQASDIE H ++I+ IK RLNEI   + G+  E+V +  DRD+ M+   A 
Sbjct: 137 IHQPLGGYQGQASDIEIHTREILSIKHRLNEIIAHHTGQPIEKVAEDTDRDNFMNPESAK 196

Query: 197 DWGVVDKVLMSRI 209
           ++G++D +L  R+
Sbjct: 197 EYGLIDDILEKRL 209


>gi|253681101|ref|ZP_04861904.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum D str. 1873]
 gi|331270305|ref|YP_004396797.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum BKT015925]
 gi|253562950|gb|EES92396.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum D str. 1873]
 gi|329126855|gb|AEB76800.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum BKT015925]
          Length = 195

 Score =  288 bits (738), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 120/195 (61%), Positives = 155/195 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQTNRGERSYDIYSRLLK+RI+F+  ++ D  A+L+ AQLLFLEAE+P K+I
Sbjct: 1   MSLVPVVVEQTNRGERSYDIYSRLLKDRIIFLGEEVNDVSASLVVAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +TAGMAIYDTMQ+IKP +ST C+G AASMG+ LL+AG KG RFALPN+ I
Sbjct: 61  YLYINSPGGSITAGMAIYDTMQYIKPDVSTICIGMAASMGAFLLTAGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DI  HA  I+KIK +LN+I  +  GK  E ++K ++RD+ M A EA
Sbjct: 121 MIHQPLGGFQGQATDIGIHANRILKIKDKLNKILSERTGKPLEVIKKDVERDNFMEADEA 180

Query: 196 CDWGVVDKVLMSRID 210
            ++G++D V+ SR  
Sbjct: 181 KEYGLIDDVITSRKK 195


>gi|254197976|ref|ZP_04904398.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei S13]
 gi|169654717|gb|EDS87410.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei S13]
          Length = 217

 Score =  288 bits (738), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 119/203 (58%), Positives = 155/203 (76%)

Query: 7   AKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
           A +D E   LGLVP+VVE + RGERSYDIYSRLLKERIVF+ G++ D  A L+ AQLLFL
Sbjct: 15  APRDFEAQALGLVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFL 74

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E+ENP K+ISLYINSPGG V+AGMAIYDTMQF+KP +ST CMG AASMG+ LL++G +G 
Sbjct: 75  ESENPDKDISLYINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGARGK 134

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           R+ALPNAR+++HQP GG  GQASDIE  A++I+ ++ RLN +   + G+  E + +  DR
Sbjct: 135 RYALPNARVMIHQPLGGARGQASDIEIQAREILYLRDRLNHLLAHHTGQDVERIARDTDR 194

Query: 187 DHIMSASEACDWGVVDKVLMSRI 209
           D+ MS+ +A  +G++D V   R 
Sbjct: 195 DNFMSSEDAKAYGLIDHVSTKRP 217


>gi|304407481|ref|ZP_07389133.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
           curdlanolyticus YK9]
 gi|304343432|gb|EFM09274.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
           curdlanolyticus YK9]
          Length = 193

 Score =  288 bits (738), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 121/192 (63%), Positives = 157/192 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQTNRGERSYDIYSRLLK+RI+F+   I+D +A  I AQLLFL A++P+K+I
Sbjct: 1   MNLVPIVVEQTNRGERSYDIYSRLLKDRIIFLGSAIDDDVANSIIAQLLFLAADDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGM I+DTMQFIKP +ST C+G AASMGSLLL+AG KG RF+LPN+ +
Sbjct: 61  HLYINSPGGSVTAGMGIFDTMQFIKPDVSTICVGMAASMGSLLLTAGAKGKRFSLPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDI+ HA  I+K K++LN+IYV+  G+ YE++E+  DRD+ +SA EA
Sbjct: 121 MIHQPLGGVRGQASDIKIHADWIIKTKQKLNQIYVERTGQPYEKIERDTDRDNFLSAEEA 180

Query: 196 CDWGVVDKVLMS 207
             +G++DKV+ S
Sbjct: 181 VAYGLIDKVVTS 192


>gi|251791978|ref|YP_003006698.1| ATP-dependent Clp protease proteolytic subunit [Aggregatibacter
           aphrophilus NJ8700]
 gi|247533365|gb|ACS96611.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Aggregatibacter aphrophilus NJ8700]
          Length = 193

 Score =  288 bits (738), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 119/193 (61%), Positives = 156/193 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++PMVV+QT+RGER+YDIYSRLLK+R++F++G++ED+MA LI AQLLFLE+E+P K+I
Sbjct: 1   MSVIPMVVDQTSRGERAYDIYSRLLKDRVIFLSGEVEDNMANLIVAQLLFLESEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGG VTAGMAIYDTMQFIKP + T C+GQA SMG+ LL+ G  G R  LP+AR+
Sbjct: 61  NLYINSPGGSVTAGMAIYDTMQFIKPDVRTLCVGQACSMGAFLLAGGAPGKRGVLPHARV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQASDI+ HAQ+I+KIK  LNE    + G+  E +EK  DRD+ MSA EA
Sbjct: 121 MIHQPLGGFRGQASDIQIHAQEILKIKSTLNERLAFHTGQPIETIEKDTDRDNFMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD+V   R
Sbjct: 181 QNYGLVDEVFTKR 193


>gi|308070425|ref|YP_003872030.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           [Paenibacillus polymyxa E681]
 gi|310643606|ref|YP_003948364.1| ATP-dependent clp protease proteolytic subunit [Paenibacillus
           polymyxa SC2]
 gi|305859704|gb|ADM71492.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           [Paenibacillus polymyxa E681]
 gi|309248556|gb|ADO58123.1| ATP-dependent Clp protease proteolytic subunit [Paenibacillus
           polymyxa SC2]
          Length = 211

 Score =  288 bits (738), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 123/211 (58%), Positives = 161/211 (76%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           M+      K+   V + LVPMVVEQTNRGERSYDIYSRLLK+RI+F++G I+D +A L+ 
Sbjct: 1   MNTGVHFNKEKRLVVMSLVPMVVEQTNRGERSYDIYSRLLKDRIIFLSGPIDDDVANLVI 60

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFL AE+P+K+I+LYINSPGG VTAGM IYDTMQFIKP +ST C+G AASMGSLLL+
Sbjct: 61  AQLLFLSAEDPEKDINLYINSPGGSVTAGMGIYDTMQFIKPDVSTICVGMAASMGSLLLT 120

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG  G R+AL N+ +++HQP GG  GQASD+  HA  I+K + +LN+IYV+  G+  E++
Sbjct: 121 AGAPGKRYALTNSEVMIHQPLGGIQGQASDMLIHADWIIKTRAKLNQIYVERTGQPLEKI 180

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           E+  DRD  M A EA  +G++D+VL   I++
Sbjct: 181 ERDTDRDFFMEAEEAKAYGIIDQVLSKPINL 211


>gi|238791431|ref|ZP_04635069.1| ATP-dependent Clp protease proteolytic subunit [Yersinia intermedia
           ATCC 29909]
 gi|238729047|gb|EEQ20563.1| ATP-dependent Clp protease proteolytic subunit [Yersinia intermedia
           ATCC 29909]
          Length = 194

 Score =  288 bits (738), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 129/193 (66%), Positives = 161/193 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT+RGERSYDI+SRLLKERI+F+TGQ+EDHMA LI AQ+LFLEAENP+K+I
Sbjct: 1   MALVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDHMANLITAQMLFLEAENPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+AG KG RF LPN+R+
Sbjct: 61  FLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLTAGAKGKRFCLPNSRV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DIE HA++I+K+K R+NE+   + GK  EE+E+  +RD  +SA EA
Sbjct: 121 MIHQPLGGFQGQATDIEIHAREILKVKSRMNELMALHTGKPLEEIERDTERDRFLSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD V   R
Sbjct: 181 VGYGLVDSVFTRR 193


>gi|222085564|ref|YP_002544094.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Agrobacterium
           radiobacter K84]
 gi|221723012|gb|ACM26168.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Agrobacterium
           radiobacter K84]
          Length = 210

 Score =  288 bits (738), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 162/207 (78%), Positives = 190/207 (91%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           ++  D  + LVPMVVEQTNRGERSYDIYSRLLKERI+F+TG +EDHMATL+CAQLLFLEA
Sbjct: 2   RNPVDTAMALVPMVVEQTNRGERSYDIYSRLLKERIIFLTGPVEDHMATLVCAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI+LYINSPGGVVTAGMAIYDTMQFIKP IST C+GQAASMGSLLL+AG+K MRF
Sbjct: 62  ENPKKEIALYINSPGGVVTAGMAIYDTMQFIKPAISTLCIGQAASMGSLLLAAGDKDMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           A PN+RI++HQPSGGF GQASDIERHA+DI+K+KRRLNEIYVK+CG+TYEEVE+TLDRDH
Sbjct: 122 ATPNSRIMVHQPSGGFQGQASDIERHARDIIKMKRRLNEIYVKHCGRTYEEVEQTLDRDH 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIEEKS 215
            MS+ EA DWG++DKVL SR ++E ++
Sbjct: 182 FMSSDEAKDWGLIDKVLTSRTEMEGEA 208


>gi|253999170|ref|YP_003051233.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylovorus
           sp. SIP3-4]
 gi|313201272|ref|YP_004039930.1| ATP-dependent clp protease, proteolytic subunit clpp [Methylovorus
           sp. MP688]
 gi|253985849|gb|ACT50706.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylovorus
           sp. SIP3-4]
 gi|312440588|gb|ADQ84694.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylovorus
           sp. MP688]
          Length = 208

 Score =  288 bits (738), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 122/199 (61%), Positives = 159/199 (79%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E   LG +PMV+EQ+ RGER+YDIYSRLL+ER++F+ G + D  A L+ AQLLFLEAENP
Sbjct: 8   EPQGLGYIPMVIEQSGRGERAYDIYSRLLRERVIFLVGPVNDMTANLVVAQLLFLEAENP 67

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+ISLYINSPGG VTAGMAIYDTMQFIKP +ST C+GQAASMG+LLL+AG K  RF LP
Sbjct: 68  DKDISLYINSPGGSVTAGMAIYDTMQFIKPDVSTLCIGQAASMGALLLTAGAKDKRFCLP 127

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+R+++HQP GGF GQASDIE HA++I+ ++ +LN I   + G+  + +E+  DRD+ MS
Sbjct: 128 NSRVMIHQPLGGFQGQASDIEIHAKEILYLREKLNLILASHTGQPVDVIERDTDRDNFMS 187

Query: 192 ASEACDWGVVDKVLMSRID 210
           A ++ ++G+VDKV+ SR D
Sbjct: 188 AQQSVNYGLVDKVIASRTD 206


>gi|161524522|ref|YP_001579534.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           multivorans ATCC 17616]
 gi|189350722|ref|YP_001946350.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           multivorans ATCC 17616]
 gi|221198217|ref|ZP_03571263.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           multivorans CGD2M]
 gi|221209201|ref|ZP_03582193.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           multivorans CGD2]
 gi|254252156|ref|ZP_04945474.1| Peptidase S14 [Burkholderia dolosa AUO158]
 gi|124894765|gb|EAY68645.1| Peptidase S14 [Burkholderia dolosa AUO158]
 gi|160341951|gb|ABX15037.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           multivorans ATCC 17616]
 gi|189334744|dbj|BAG43814.1| ATP-dependent Clp protease [Burkholderia multivorans ATCC 17616]
 gi|221170939|gb|EEE03394.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           multivorans CGD2]
 gi|221182149|gb|EEE14550.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           multivorans CGD2M]
 gi|325518991|gb|EGC98514.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia sp.
           TJI49]
          Length = 217

 Score =  288 bits (738), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 121/203 (59%), Positives = 158/203 (77%)

Query: 7   AKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
           A +  E   LGLVP+VVE + RGERSYDIYSRLLKER+VF+ G++ D  A L+ AQLLFL
Sbjct: 15  APQGFEAQALGLVPIVVETSGRGERSYDIYSRLLKERLVFMVGEVNDQTANLVVAQLLFL 74

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E+ENP K+ISLYINSPGG V+AGMAIYDTMQFIKP +ST CMG AASMG+ LL++G KG 
Sbjct: 75  ESENPDKDISLYINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLASGAKGK 134

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           RFALPN+R+++HQP GG  GQASDIE  A++I+ +K RLN +  ++ G+  E + +  DR
Sbjct: 135 RFALPNSRVMIHQPLGGARGQASDIEIQAREILYLKERLNHLLAQHTGQDVERIARDTDR 194

Query: 187 DHIMSASEACDWGVVDKVLMSRI 209
           D+ MS+ +A  +G++D+VL+ R 
Sbjct: 195 DNFMSSEDAKAYGLIDQVLLKRP 217


>gi|238919011|ref|YP_002932525.1| ATP-dependent Clp protease, proteolytic subunit ClpP, putative
           [Edwardsiella ictaluri 93-146]
 gi|259585951|sp|C5BCJ6|CLPP_EDWI9 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|238868579|gb|ACR68290.1| ATP-dependent Clp protease, proteolytic subunit ClpP, putative
           [Edwardsiella ictaluri 93-146]
          Length = 206

 Score =  288 bits (738), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 130/209 (62%), Positives = 165/209 (78%), Gaps = 3/209 (1%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+     +      + LVPMVVEQT+RGERSYDI+SRLLKERI+F+TGQ+EDHMA LI 
Sbjct: 1   MSYS---DQRELAPHMALVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDHMANLIV 57

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMGS LL+
Sbjct: 58  AQMLFLEAENPEKDIHLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGSFLLA 117

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG +G RF LPN+R+++HQP GGF GQA+DIE HA++I+ IK R+N +  K+ G+  E +
Sbjct: 118 AGAQGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKEILSIKARMNTLMAKHSGQPIEVI 177

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           E+  +RD  MSA +A ++G+VD VL  R 
Sbjct: 178 ERDTERDRFMSAQDAVEYGLVDAVLTQRA 206


>gi|218289882|ref|ZP_03494072.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Alicyclobacillus acidocaldarius LAA1]
 gi|258511244|ref|YP_003184678.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|218240022|gb|EED07208.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Alicyclobacillus acidocaldarius LAA1]
 gi|257477970|gb|ACV58289.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 192

 Score =  288 bits (738), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 109/192 (56%), Positives = 147/192 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT+RGERSYDIYSRLLK+RI+F+   I+D +A  + AQLLFL A++P K+I
Sbjct: 1   MSLIPYVIEQTSRGERSYDIYSRLLKDRIIFLGTPIDDDVANAVVAQLLFLAADDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG V+AG+AIYDTMQ IKP +ST C+G AASM ++LL+AG KG R+ALPN+ +
Sbjct: 61  QMYINSPGGSVSAGLAIYDTMQHIKPDVSTMCVGMAASMAAVLLAAGAKGKRYALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDIE HA+ I+K + RLN I  +  G+  E V +  DRD+ MSA EA
Sbjct: 121 MIHQPLGGARGQASDIEIHARHILKTRERLNRILAERTGQPLERVAQDTDRDNFMSAEEA 180

Query: 196 CDWGVVDKVLMS 207
             +G++D+V+  
Sbjct: 181 KAYGLIDEVIYR 192


>gi|134094958|ref|YP_001100033.1| ATP-dependent Clp protease proteolytic subunit [Herminiimonas
           arsenicoxydans]
 gi|133738861|emb|CAL61908.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           [Herminiimonas arsenicoxydans]
          Length = 209

 Score =  288 bits (738), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 125/209 (59%), Positives = 160/209 (76%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           M+         +   LG+VPMV+EQ+ RGER+YDIYSRLLKER++F+ G + DH A LI 
Sbjct: 1   MTTSMTRTSALDTDMLGMVPMVIEQSGRGERAYDIYSRLLKERVIFLVGPVNDHAANLIV 60

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE+ENP K+ISLYINSPGG V+AGMAI+DTMQFIKP +ST C G AASMG+ LL+
Sbjct: 61  AQLLFLESENPDKDISLYINSPGGSVSAGMAIFDTMQFIKPNVSTLCTGLAASMGAFLLA 120

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AGEKG RF+LPN+RI++HQP GG  GQASDIE  A++I+ ++ RLN+I     GKT EE+
Sbjct: 121 AGEKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLNQILADRTGKTLEEI 180

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRI 209
            +  DRD+ MSA  A ++G++DKVL +R 
Sbjct: 181 SRDTDRDNFMSADAAVEYGMIDKVLTTRA 209


>gi|134295958|ref|YP_001119693.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           vietnamiensis G4]
 gi|166201808|sp|A4JF05|CLPP_BURVG RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|134139115|gb|ABO54858.1| ATP-dependent Clp protease proteolytic subunit ClpP [Burkholderia
           vietnamiensis G4]
          Length = 217

 Score =  288 bits (738), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 121/203 (59%), Positives = 158/203 (77%)

Query: 7   AKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
           A +  E   LGLVP+VVE + RGERSYDIYSRLLKER+VF+ G++ D  A L+ AQLLFL
Sbjct: 15  APQGFEAQALGLVPIVVETSGRGERSYDIYSRLLKERLVFMVGEVNDQTANLVVAQLLFL 74

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E+ENP K+ISLYINSPGG V+AGMAIYDTMQFIKP +ST CMG AASMG+ LL++G KG 
Sbjct: 75  ESENPDKDISLYINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLASGAKGK 134

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           RFALPN+R+++HQP GG  GQASDIE  A++I+ +K RLN +  ++ G+  E + +  DR
Sbjct: 135 RFALPNSRVMIHQPLGGARGQASDIEIQAREILYLKERLNNLLAQHTGQDVERIARDTDR 194

Query: 187 DHIMSASEACDWGVVDKVLMSRI 209
           D+ MS+ +A  +G++D+VL+ R 
Sbjct: 195 DNFMSSDDAKAYGLIDQVLLKRP 217


>gi|260460897|ref|ZP_05809147.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mesorhizobium
           opportunistum WSM2075]
 gi|259033474|gb|EEW34735.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mesorhizobium
           opportunistum WSM2075]
          Length = 209

 Score =  288 bits (738), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 155/204 (75%), Positives = 184/204 (90%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           K+  + ++ LVPMVVEQTNRGER+YDI+SRLLKERI+F+TG +ED MATL+CAQLLFLEA
Sbjct: 2   KNPVETYMNLVPMVVEQTNRGERAYDIFSRLLKERIIFITGPVEDGMATLVCAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI+LYINSPGGVVT+GMAIYDTMQFIKP +ST C+GQAASMGSLLL+AG K MRF
Sbjct: 62  ENPKKEINLYINSPGGVVTSGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLTAGHKDMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           A PNARI++HQPSGGF GQASDIERHAQDI+K+KRRLNE+YVK+ GK+YEE+EKTLDRDH
Sbjct: 122 ATPNARIMVHQPSGGFQGQASDIERHAQDIIKLKRRLNEVYVKHTGKSYEEIEKTLDRDH 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIE 212
            M+A EA D+G++DKV+ SR   E
Sbjct: 182 FMTADEARDFGLIDKVISSREAAE 205


>gi|182417589|ref|ZP_02948911.1| Clp protease [Clostridium butyricum 5521]
 gi|237667767|ref|ZP_04527751.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182378544|gb|EDT76073.1| Clp protease [Clostridium butyricum 5521]
 gi|237656115|gb|EEP53671.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 201

 Score =  288 bits (737), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 117/201 (58%), Positives = 157/201 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT+RGERSYDI+SRLLKERI+ ++G++ D  A LI AQLLFL++E+P K+I
Sbjct: 1   MSLVPMVVEQTSRGERSYDIFSRLLKERIIMLSGEVNDASAQLIVAQLLFLDSEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG VTAGMAIYDTMQ I   +ST C+G AASMG+ LLS G KG R+ALPNA I
Sbjct: 61  SLYINSPGGSVTAGMAIYDTMQLINADVSTICVGMAASMGAFLLSCGAKGKRYALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQ +DIE HA  ++K+K  LN+   +N GK  E +++  +RD+ MSA +A
Sbjct: 121 MIHQPLGGFQGQVTDIEIHANRMLKVKEVLNKTLSENTGKPLEVIQRDTERDNFMSAEDA 180

Query: 196 CDWGVVDKVLMSRIDIEEKSK 216
            ++G+VD++++ +   +EKS+
Sbjct: 181 KEYGLVDEIIVKKPKNKEKSE 201


>gi|302871325|ref|YP_003839961.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574184|gb|ADL41975.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 195

 Score =  288 bits (737), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 119/195 (61%), Positives = 154/195 (78%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
              LVP+V+EQTNRGER+YDIYSRLLK+RIV ++G+I D +A+LI AQLLFLEAE+P K+
Sbjct: 1   MSALVPIVIEQTNRGERAYDIYSRLLKDRIVILSGEITDDIASLIVAQLLFLEAEDPDKD 60

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I LYINSPGG VTAG AIYDTMQ+IKP +ST C+G AASMG+ LL+AG KG RFALPN+ 
Sbjct: 61  IYLYINSPGGSVTAGFAIYDTMQYIKPDVSTICVGMAASMGAFLLAAGAKGKRFALPNSE 120

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQP GG  GQA+DI+ HA+ I+KIK R+N+I  +  G+  E +E+  DRD  M+A E
Sbjct: 121 IMIHQPLGGVRGQATDIKIHAEWILKIKNRINKILSERTGQPIEVIERDTDRDFFMTAEE 180

Query: 195 ACDWGVVDKVLMSRI 209
           A  +G++D+V+  R 
Sbjct: 181 ALKYGIIDRVIERRP 195


>gi|150016209|ref|YP_001308463.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           beijerinckii NCIMB 8052]
 gi|149902674|gb|ABR33507.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           beijerinckii NCIMB 8052]
          Length = 199

 Score =  288 bits (737), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 116/192 (60%), Positives = 152/192 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT+RGERSYDI+SRLLKERI+ ++G++ D  A LI AQLLFLE+E+P K+I
Sbjct: 1   MALVPMVVEQTSRGERSYDIFSRLLKERIIMLSGEVNDDSANLIVAQLLFLESEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG +TAG AIYDTMQ+IK  +ST C+G AASMG+ LLS+G KG RFALPNA +
Sbjct: 61  YIYINSPGGSITAGNAIYDTMQYIKCDVSTICIGMAASMGAFLLSSGTKGKRFALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+D E HA+ I+K+K  LN I  +N GK  E ++  ++RD+ MSA EA
Sbjct: 121 MIHQPLGGFQGQATDFEIHAKRILKMKETLNRILSENTGKPLETIKADVERDNFMSAEEA 180

Query: 196 CDWGVVDKVLMS 207
             +G+VD+V+ +
Sbjct: 181 KAYGLVDEVITT 192


>gi|89900346|ref|YP_522817.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhodoferax
           ferrireducens T118]
 gi|89345083|gb|ABD69286.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rhodoferax
           ferrireducens T118]
          Length = 209

 Score =  288 bits (737), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 111/209 (53%), Positives = 157/209 (75%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS         +   LG+VPMV+EQ+ RGERSYDIYSRLLKER++F+ G + D++A L+ 
Sbjct: 1   MSLPNMMMGAMQTQALGMVPMVIEQSGRGERSYDIYSRLLKERVIFLVGPVNDYVANLVV 60

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE++NP K+IS YINSPGG V+AGMAI+DTM F+KP +ST C G AASMG+ LL+
Sbjct: 61  AQLLFLESDNPDKDISFYINSPGGSVSAGMAIFDTMNFVKPDVSTLCTGMAASMGAFLLA 120

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF+LPN+++++HQPSGG  GQA++IE  A++I+K + +LN+I  +  G+    +
Sbjct: 121 AGAKGKRFSLPNSKVMIHQPSGGSQGQATEIEIQAREILKTREQLNKILAERTGQPLARI 180

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           E+  +RD+ MSA E  ++G++D+V+  R 
Sbjct: 181 ERDTERDYYMSADECKEYGLIDQVISKRA 209


>gi|121611285|ref|YP_999092.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Verminephrobacter eiseniae EF01-2]
 gi|166214720|sp|A1WR17|CLPP_VEREI RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|121555925|gb|ABM60074.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Verminephrobacter eiseniae EF01-2]
          Length = 202

 Score =  288 bits (737), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 112/197 (56%), Positives = 156/197 (79%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E   LG++PMV+EQ+ RGERSYDIYSRLLKER++F+ G + D  A L+ AQLLFLE+ENP
Sbjct: 5   ETQGLGMIPMVIEQSGRGERSYDIYSRLLKERVIFLVGPVNDQTANLVVAQLLFLESENP 64

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+IS YINSPGG V+AGMAI+DTM FIKP +ST C G AASMG+ LL+AG KG RFALP
Sbjct: 65  DKDISFYINSPGGSVSAGMAIFDTMNFIKPDVSTLCTGMAASMGAFLLAAGAKGKRFALP 124

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+++++HQP GG  GQA++IE HA++I+K + +LN+I  +  G+  E++++  +RD+ +S
Sbjct: 125 NSKVMIHQPLGGMQGQATEIEIHAREILKTREQLNKILAERTGQPLEKIQRDTERDYFLS 184

Query: 192 ASEACDWGVVDKVLMSR 208
           A E+ ++G+VD+V+  R
Sbjct: 185 ADESREYGLVDQVIHRR 201


>gi|153814157|ref|ZP_01966825.1| hypothetical protein RUMTOR_00366 [Ruminococcus torques ATCC 27756]
 gi|317499957|ref|ZP_07958193.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|331087820|ref|ZP_08336745.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
           bacterium 3_1_46FAA]
 gi|145848553|gb|EDK25471.1| hypothetical protein RUMTOR_00366 [Ruminococcus torques ATCC 27756]
 gi|316898674|gb|EFV20709.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|330409515|gb|EGG88956.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
           bacterium 3_1_46FAA]
          Length = 193

 Score =  288 bits (737), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 113/192 (58%), Positives = 152/192 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLLKERI+F+  ++ D  A++I AQLLFLEA++P K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLKERIIFLGEEVNDVSASVIVAQLLFLEADDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMAIYDTMQ+IK  +ST C+G AASMG+ LL+ G+KG RFALPNA I
Sbjct: 61  QLYINSPGGSVTAGMAIYDTMQYIKCDVSTVCIGMAASMGAFLLAGGKKGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I+  A+ I++ K++LNEI   N G++ E ++   +RD+ MSA EA
Sbjct: 121 MIHQPSGGAQGQATEIQIAAEHILRTKQKLNEILAANTGQSLETIKADTERDNFMSADEA 180

Query: 196 CDWGVVDKVLMS 207
             +G++D+V+  
Sbjct: 181 KAYGLIDEVIAK 192


>gi|206901598|ref|YP_002250810.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dictyoglomus
           thermophilum H-6-12]
 gi|206740701|gb|ACI19759.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dictyoglomus
           thermophilum H-6-12]
          Length = 194

 Score =  288 bits (737), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 115/193 (59%), Positives = 156/193 (80%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+V+EQT RGER+YDIYSRLLK RIVF+   I D +A L+ AQLLFLE+E+P+K+I L
Sbjct: 2   LVPIVIEQTPRGERAYDIYSRLLKSRIVFLGTAINDEVANLVVAQLLFLESEDPEKDIYL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG+AIYDTM+ IKP ++T C+GQAASM ++LL+AG+KG R+ALP++R+++
Sbjct: 62  YINSPGGEVSAGLAIYDTMRHIKPKVATVCVGQAASMAAILLAAGDKGKRYALPHSRVMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  G A+DIE H ++I+KIKR LNEI   + G+  E++E+  DRD  MSA EA +
Sbjct: 122 HQPLGGAYGPAADIEIHTREILKIKRVLNEILAHHTGQPIEKIERDTDRDFFMSAYEAKE 181

Query: 198 WGVVDKVLMSRID 210
           +G+VD+VL S+ +
Sbjct: 182 YGIVDEVLESKKE 194


>gi|13476994|ref|NP_108564.1| ATP-dependent Clp protease proteolytic subunit [Mesorhizobium loti
           MAFF303099]
 gi|18202642|sp|Q982V6|CLPP2_RHILO RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|14027757|dbj|BAB54350.1| ATP-dependent Clp proteinase [Mesorhizobium loti MAFF303099]
          Length = 209

 Score =  288 bits (737), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 154/206 (74%), Positives = 183/206 (88%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           K+  + ++ LVPMVVEQTNRGER+YDI+SRLLKERI+F+TG +ED MATL+CAQLLFLEA
Sbjct: 2   KNPVETYMNLVPMVVEQTNRGERAYDIFSRLLKERIIFITGPVEDGMATLVCAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI+LYINSPGGVVT+GMAIYDTMQFIKP +ST C+GQAASMGSLLL+AG K MRF
Sbjct: 62  ENPKKEINLYINSPGGVVTSGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLTAGHKDMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           A PNARI++HQPSGGF GQASDIERHA DIVK+KRRLNE+YVK+ GK+YEE+E+TLDRDH
Sbjct: 122 ATPNARIMVHQPSGGFQGQASDIERHAMDIVKLKRRLNEVYVKHTGKSYEEIERTLDRDH 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIEEK 214
            M+A EA D+G++DKV+ SR   E  
Sbjct: 182 FMTADEAKDFGLIDKVISSREPAESA 207


>gi|15965008|ref|NP_385361.1| ATP-dependent Clp protease proteolytic subunit [Sinorhizobium
           meliloti 1021]
 gi|307301080|ref|ZP_07580849.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sinorhizobium
           meliloti BL225C]
 gi|307317814|ref|ZP_07597252.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sinorhizobium
           meliloti AK83]
 gi|18202306|sp|P58278|CLPP2_RHIME RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|15074187|emb|CAC45834.1| Probable ATP-dependent CLP protease proteolytic subunit
           [Sinorhizobium meliloti 1021]
 gi|306896576|gb|EFN27324.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sinorhizobium
           meliloti AK83]
 gi|306904035|gb|EFN34621.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sinorhizobium
           meliloti BL225C]
          Length = 208

 Score =  288 bits (737), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 159/204 (77%), Positives = 186/204 (91%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           ++  D  + LVPMVVEQTNRGERSYDIYSRLLKERI+F+TG +EDHMATL+CAQLLFLEA
Sbjct: 2   RNPVDTAMALVPMVVEQTNRGERSYDIYSRLLKERIIFLTGPVEDHMATLVCAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KE++LYINSPGGVVTAGMAIYDTMQFIKP +ST C+GQAASMGSLLL+AG K MRF
Sbjct: 62  ENPKKEVALYINSPGGVVTAGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLAAGHKDMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           A PN+RI++HQPSGGF GQASDIERHA+DI+K+KRRLNE+YVK+CG+TYEEVE+TLDRDH
Sbjct: 122 ATPNSRIMVHQPSGGFQGQASDIERHARDILKMKRRLNEVYVKHCGRTYEEVEQTLDRDH 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIE 212
            MSA EA DWG++DKV+ SR  +E
Sbjct: 182 FMSADEALDWGLIDKVITSRDAVE 205


>gi|259909254|ref|YP_002649610.1| Putative ATP-dependent Clp protease proteolytic subunit [Erwinia
           pyrifoliae Ep1/96]
 gi|224964876|emb|CAX56398.1| Putative ATP-dependent Clp protease proteolytic subunit [Erwinia
           pyrifoliae Ep1/96]
          Length = 207

 Score =  288 bits (737), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 132/208 (63%), Positives = 171/208 (82%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  +++     + LVPMVVEQT+RGERSYDIYSRLLKERI+F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--ERELTAPHMALVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIHLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG R+ LPN+R+++HQP GGF GQASDI+ HA++I+K K+ +NE+  K+ G+T E +
Sbjct: 119 AGAKGKRYCLPNSRVMIHQPLGGFQGQASDIDIHAREIIKTKQMMNELMAKHTGQTIETI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SASE+ ++G+VD VL  R
Sbjct: 179 ERDTNRDRFLSASESVEYGLVDSVLSQR 206


>gi|218768333|ref|YP_002342845.1| endopeptidase [Neisseria meningitidis Z2491]
 gi|18203136|sp|Q9JU33|CLPP_NEIMA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|121052341|emb|CAM08672.1| endopeptidase [Neisseria meningitidis Z2491]
 gi|308389431|gb|ADO31751.1| ATP-dependent Clp protease, proteolytic subunit [Neisseria
           meningitidis alpha710]
 gi|319410578|emb|CBY90947.1| ATP-dependent Clp protease proteolytic subunit (endopeptidase Clp)
           [Neisseria meningitidis WUE 2594]
          Length = 204

 Score =  288 bits (737), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 123/197 (62%), Positives = 159/197 (80%), Gaps = 2/197 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ+ RGER++DIYSRLLKERIVF+ G + D  A L+ AQLLFLE+ENP K+I  
Sbjct: 7   LVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFF 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM+IYDTM FIKP +ST C+GQAASMG+ LLSAGEKG RFALPN+RI++
Sbjct: 67  YINSPGGSVTAGMSIYDTMNFIKPDVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMI 126

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASDIE HA++++KIK +LN +  K+CG+   ++E+  DRD+ MSA EA
Sbjct: 127 HQPLISGGLGGQASDIEIHARELLKIKEKLNRLMAKHCGRDLADLERDTDRDNFMSAEEA 186

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G++D+VL +R  ++
Sbjct: 187 KEYGLIDQVLENRASLQ 203


>gi|93007058|ref|YP_581495.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Psychrobacter
           cryohalolentis K5]
 gi|92394736|gb|ABE76011.1| ATP-dependent Clp protease proteolytic subunit ClpP [Psychrobacter
           cryohalolentis K5]
          Length = 231

 Score =  288 bits (737), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 122/205 (59%), Positives = 162/205 (79%)

Query: 5   GCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLL 64
             A+ +       LVPMVVEQ+ RGERS+DI+SRLL+ER++F+TGQ+EDHMA LI AQLL
Sbjct: 24  QSAQYNQSATQAALVPMVVEQSARGERSFDIFSRLLRERVIFLTGQVEDHMANLIVAQLL 83

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           FLEAENP K+I LYINSPGG V+AG+AI+DTM FIKP +ST CMG A SMGS LL+AGEK
Sbjct: 84  FLEAENPDKDIHLYINSPGGSVSAGLAIFDTMNFIKPEVSTICMGGAYSMGSFLLAAGEK 143

Query: 125 GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
           G R+AL NAR+++HQPSGG  GQA+DIE +A++I+K + RLNEI  +  G+  +++EK +
Sbjct: 144 GKRYALANARVMIHQPSGGAQGQATDIEINAREILKTRARLNEILAERTGQPVDKIEKDV 203

Query: 185 DRDHIMSASEACDWGVVDKVLMSRI 209
           +RD+ + A EA ++G++D+VL  R 
Sbjct: 204 ERDYWLDAKEAKEYGLIDEVLERRP 228


>gi|301598440|pdb|3HLN|A Chain A, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598441|pdb|3HLN|B Chain B, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598442|pdb|3HLN|C Chain C, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598443|pdb|3HLN|D Chain D, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598444|pdb|3HLN|E Chain E, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598445|pdb|3HLN|F Chain F, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598446|pdb|3HLN|G Chain G, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598447|pdb|3HLN|H Chain H, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598448|pdb|3HLN|I Chain I, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598449|pdb|3HLN|J Chain J, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598450|pdb|3HLN|K Chain K, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598451|pdb|3HLN|L Chain L, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598452|pdb|3HLN|M Chain M, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598453|pdb|3HLN|N Chain N, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598454|pdb|3HLN|O Chain O, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598455|pdb|3HLN|P Chain P, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598456|pdb|3HLN|Q Chain Q, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598457|pdb|3HLN|R Chain R, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598458|pdb|3HLN|S Chain S, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598459|pdb|3HLN|T Chain T, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598460|pdb|3HLN|U Chain U, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598461|pdb|3HLN|V Chain V, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598462|pdb|3HLN|W Chain W, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598463|pdb|3HLN|X Chain X, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598464|pdb|3HLN|Y Chain Y, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598465|pdb|3HLN|Z Chain Z, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598466|pdb|3HLN|1 Chain 1, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
 gi|301598467|pdb|3HLN|2 Chain 2, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
           Disulfide Bonds
          Length = 193

 Score =  288 bits (737), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 124/192 (64%), Positives = 163/192 (84%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI AQ+LFLEAENP+K+I 
Sbjct: 1   ALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIY 60

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+AG KG RF LPN+R++
Sbjct: 61  LYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVM 120

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG+ GQA+DIE H ++I+K+K R+NE+   + G++ E++E+  +RD  +SA EA 
Sbjct: 121 IHQPLGGYQGQATDIEIHCREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAV 180

Query: 197 DWGVVDKVLMSR 208
           ++G+VD +L  R
Sbjct: 181 EYGLVDSILTHR 192


>gi|167562414|ref|ZP_02355330.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           oklahomensis EO147]
 gi|167569597|ref|ZP_02362471.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           oklahomensis C6786]
          Length = 207

 Score =  288 bits (737), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 121/203 (59%), Positives = 157/203 (77%)

Query: 7   AKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
           A +D E   LGLVP+VVE + RGERSYDIYSRLLKERIVF+ G++ D  A L+ AQLLFL
Sbjct: 5   APRDFEAQALGLVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFL 64

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E+ENP K+ISLYINSPGG V+AGMAIYDTMQF+KP +ST CMG AASMG+ LL++G KG 
Sbjct: 65  ESENPDKDISLYINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGK 124

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           R+ALPNAR+++HQP GG  GQASDIE  A++I+ +K RLN +  ++ G+  E + +  DR
Sbjct: 125 RYALPNARVMIHQPLGGARGQASDIEIQAREILYLKDRLNHLLAQHTGQDVERIARDTDR 184

Query: 187 DHIMSASEACDWGVVDKVLMSRI 209
           D+ MS+ +A  +G++D V + R 
Sbjct: 185 DNFMSSEDAKAYGLIDHVSIKRP 207


>gi|120554758|ref|YP_959109.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Marinobacter
           aquaeolei VT8]
 gi|120324607|gb|ABM18922.1| ATP-dependent Clp protease proteolytic subunit ClpP [Marinobacter
           aquaeolei VT8]
          Length = 211

 Score =  288 bits (737), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 112/194 (57%), Positives = 155/194 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
            GLVP+V+EQT RGERS+DIYSRLLKER++F+ G +EDHMA L+ AQLLFLE+ENP K+I
Sbjct: 15  SGLVPIVIEQTARGERSFDIYSRLLKERVIFLVGPVEDHMANLVVAQLLFLESENPDKDI 74

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG V+AGM+IYDTMQF+KP ++T C+GQAASMG+ LLS G KG R  LP++R+
Sbjct: 75  HLYINSPGGSVSAGMSIYDTMQFVKPDVATLCIGQAASMGAFLLSGGAKGKRACLPHSRV 134

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG+ GQA+DIE H ++I+KI+  LNE+  ++ G+  E + +  DRD+ M  ++A
Sbjct: 135 MIHQPLGGYQGQATDIEIHTREILKIRNTLNELLAEHTGQDIETIARDTDRDNFMDPAQA 194

Query: 196 CDWGVVDKVLMSRI 209
            ++G++D +L  R+
Sbjct: 195 KEYGLIDTILDKRV 208


>gi|59801023|ref|YP_207735.1| putative endopeptidase [Neisseria gonorrhoeae FA 1090]
 gi|239999171|ref|ZP_04719095.1| putative endopeptidase [Neisseria gonorrhoeae 35/02]
 gi|240013921|ref|ZP_04720834.1| putative endopeptidase [Neisseria gonorrhoeae DGI18]
 gi|240016363|ref|ZP_04722903.1| putative endopeptidase [Neisseria gonorrhoeae FA6140]
 gi|240080482|ref|ZP_04725025.1| putative endopeptidase [Neisseria gonorrhoeae FA19]
 gi|240113150|ref|ZP_04727640.1| putative endopeptidase [Neisseria gonorrhoeae MS11]
 gi|240115906|ref|ZP_04729968.1| putative endopeptidase [Neisseria gonorrhoeae PID18]
 gi|240118204|ref|ZP_04732266.1| putative endopeptidase [Neisseria gonorrhoeae PID1]
 gi|240121490|ref|ZP_04734452.1| putative endopeptidase [Neisseria gonorrhoeae PID24-1]
 gi|240123752|ref|ZP_04736708.1| putative endopeptidase [Neisseria gonorrhoeae PID332]
 gi|240125943|ref|ZP_04738829.1| putative endopeptidase [Neisseria gonorrhoeae SK-92-679]
 gi|240128455|ref|ZP_04741116.1| putative endopeptidase [Neisseria gonorrhoeae SK-93-1035]
 gi|254493943|ref|ZP_05107114.1| endopeptidase [Neisseria gonorrhoeae 1291]
 gi|260440279|ref|ZP_05794095.1| ATP-dependent Clp protease proteolytic subunit [Neisseria
           gonorrhoeae DGI2]
 gi|268595002|ref|ZP_06129169.1| ATP-dependent Clp protease proteolytic subunit [Neisseria
           gonorrhoeae 35/02]
 gi|268596618|ref|ZP_06130785.1| ATP-dependent Clp protease proteolytic subunit [Neisseria
           gonorrhoeae FA19]
 gi|268599230|ref|ZP_06133397.1| endopeptidase [Neisseria gonorrhoeae MS11]
 gi|268601577|ref|ZP_06135744.1| endopeptidase [Neisseria gonorrhoeae PID18]
 gi|268603916|ref|ZP_06138083.1| endopeptidase [Neisseria gonorrhoeae PID1]
 gi|268682379|ref|ZP_06149241.1| endopeptidase [Neisseria gonorrhoeae PID332]
 gi|268684537|ref|ZP_06151399.1| endopeptidase [Neisseria gonorrhoeae SK-92-679]
 gi|268686847|ref|ZP_06153709.1| endopeptidase [Neisseria gonorrhoeae SK-93-1035]
 gi|291043574|ref|ZP_06569290.1| ATP-dependent Clp protease proteolytic subunit [Neisseria
           gonorrhoeae DGI2]
 gi|293398887|ref|ZP_06643052.1| Clp protease [Neisseria gonorrhoeae F62]
 gi|67460148|sp|Q5F914|CLPP_NEIG1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|59717918|gb|AAW89323.1| putative endopeptidase [Neisseria gonorrhoeae FA 1090]
 gi|226512983|gb|EEH62328.1| endopeptidase [Neisseria gonorrhoeae 1291]
 gi|268548391|gb|EEZ43809.1| ATP-dependent Clp protease proteolytic subunit [Neisseria
           gonorrhoeae 35/02]
 gi|268550406|gb|EEZ45425.1| ATP-dependent Clp protease proteolytic subunit [Neisseria
           gonorrhoeae FA19]
 gi|268583361|gb|EEZ48037.1| endopeptidase [Neisseria gonorrhoeae MS11]
 gi|268585708|gb|EEZ50384.1| endopeptidase [Neisseria gonorrhoeae PID18]
 gi|268588047|gb|EEZ52723.1| endopeptidase [Neisseria gonorrhoeae PID1]
 gi|268622663|gb|EEZ55063.1| endopeptidase [Neisseria gonorrhoeae PID332]
 gi|268624821|gb|EEZ57221.1| endopeptidase [Neisseria gonorrhoeae SK-92-679]
 gi|268627131|gb|EEZ59531.1| endopeptidase [Neisseria gonorrhoeae SK-93-1035]
 gi|291012037|gb|EFE04026.1| ATP-dependent Clp protease proteolytic subunit [Neisseria
           gonorrhoeae DGI2]
 gi|291610301|gb|EFF39411.1| Clp protease [Neisseria gonorrhoeae F62]
          Length = 204

 Score =  287 bits (736), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 123/196 (62%), Positives = 158/196 (80%), Gaps = 2/196 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ+ RGER++DIYSRLLKERIVF+ G + D  A L+ AQLLFLE+ENP K+I  
Sbjct: 7   LVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFF 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM+IYDTM FIKP +ST C+GQAASMG+ LLSAGEKG RFALPN+RI++
Sbjct: 67  YINSPGGSVTAGMSIYDTMNFIKPDVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMI 126

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASDIE HA++++KIK +LN +  K+CG+   ++E+  DRD+ MSA EA
Sbjct: 127 HQPLISGGLGGQASDIEIHARELLKIKEKLNRLMAKHCGRDLADLERDTDRDNFMSAEEA 186

Query: 196 CDWGVVDKVLMSRIDI 211
            ++G++D+VL +R  +
Sbjct: 187 KEYGLIDQVLENRASL 202


>gi|291548434|emb|CBL21542.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ruminococcus
           sp. SR1/5]
          Length = 193

 Score =  287 bits (736), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 117/193 (60%), Positives = 150/193 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLLK+RI+F+  ++ D  A LI AQLLFLEAE+P K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLKDRIIFLGEEVNDVSANLIVAQLLFLEAEDPSKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMAIYDTMQ+IK  +ST C+G AASMG+ LLS+G KG R+ALPN+ I
Sbjct: 61  QLYINSPGGSVTAGMAIYDTMQYIKCDVSTICLGMAASMGAFLLSSGAKGKRYALPNSTI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I+  A  I K K++LNEI   N G+  E VEK  DRD+ M+A EA
Sbjct: 121 MIHQPSGGAQGQATEIQIVADQIAKTKKKLNEILSANTGQPLEIVEKDTDRDNYMTAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D V++ +
Sbjct: 181 KAYGLIDGVVIHK 193


>gi|255067667|ref|ZP_05319522.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
           sicca ATCC 29256]
 gi|255048141|gb|EET43605.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
           sicca ATCC 29256]
          Length = 206

 Score =  287 bits (736), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 123/197 (62%), Positives = 159/197 (80%), Gaps = 2/197 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ+ RGER++DIYSRLLKERIVF+ G + D  A L+ AQLLFLE+ENP K+I  
Sbjct: 9   LVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFF 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM+IYDTM FIKP +ST C+GQAASMG+ LLSAGEKG RFALPN+RI++
Sbjct: 69  YINSPGGSVTAGMSIYDTMNFIKPNVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMI 128

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASDIE HA++++KIK +LN +  K+CG+   ++E+  DRD+ MSA EA
Sbjct: 129 HQPLISGGLGGQASDIEIHARELLKIKEKLNRLMAKHCGRDLADLERDTDRDNFMSAEEA 188

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G++D+VL +R  ++
Sbjct: 189 KEYGLIDQVLENRASLQ 205


>gi|239815493|ref|YP_002944403.1| ATP-dependent Clp protease proteolytic subunit [Variovorax
           paradoxus S110]
 gi|259491242|sp|C5CJT4|CLPP_VARPS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|239802070|gb|ACS19137.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Variovorax
           paradoxus S110]
          Length = 202

 Score =  287 bits (736), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 117/193 (60%), Positives = 156/193 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG++PMV+EQ+ RGERSYDIYSRLLKERI+F+ G++ D  A L+ AQLLFLE+ENP K+I
Sbjct: 9   LGMIPMVIEQSGRGERSYDIYSRLLKERIIFLVGEVNDQTANLVVAQLLFLESENPDKDI 68

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S YINSPGG V+AGMAIYDTMQFIKP +ST C+G AASMG+ LL+AGEKG RF+LPN++I
Sbjct: 69  SFYINSPGGSVSAGMAIYDTMQFIKPDVSTMCIGFAASMGAFLLAAGEKGKRFSLPNSKI 128

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQ  GG  GQA+DIE HA+DI++ K ++N I  +  G+  E+V+   +RD+ ++A EA
Sbjct: 129 MIHQVLGGARGQATDIEIHARDILRTKDQMNRILAERTGQPLEKVKSDTERDYFLTADEA 188

Query: 196 CDWGVVDKVLMSR 208
            D+G+VD+V+  R
Sbjct: 189 KDYGLVDQVIAKR 201


>gi|188534634|ref|YP_001908431.1| Putative ATP-dependent Clp protease proteolytic subunit [Erwinia
           tasmaniensis Et1/99]
 gi|188029676|emb|CAO97555.1| Putative ATP-dependent Clp protease proteolytic subunit [Erwinia
           tasmaniensis Et1/99]
          Length = 207

 Score =  287 bits (736), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 132/208 (63%), Positives = 171/208 (82%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  +++     + LVPMVVEQT+RGERSYDIYSRLLKERI+F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--ERELTAPHMALVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIHLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG R+ LPN+R+++HQP GGF GQASDI+ HA++I+K K+ +NE+  K+ G+T E +
Sbjct: 119 AGAKGKRYCLPNSRVMIHQPLGGFQGQASDIDIHAREIIKTKQMMNELMAKHTGQTIETI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SASE+ ++G+VD VL  R
Sbjct: 179 ERDTNRDRFLSASESVEYGLVDSVLAQR 206


>gi|154506030|ref|ZP_02042768.1| hypothetical protein RUMGNA_03572 [Ruminococcus gnavus ATCC 29149]
 gi|153793529|gb|EDN75949.1| hypothetical protein RUMGNA_03572 [Ruminococcus gnavus ATCC 29149]
          Length = 193

 Score =  287 bits (736), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 112/192 (58%), Positives = 149/192 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLLKERI+F+  ++ D  A++I AQLLFLEA++P K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLKERIIFLGEEVNDVSASVIVAQLLFLEADDPNKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG+AIYDTMQ+IK  +ST C+G AASMG+ LLS G KG RFALPNA I
Sbjct: 61  QLYINSPGGSVTAGLAIYDTMQYIKCDVSTVCIGMAASMGAFLLSGGAKGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I   A+ I++ +++LNEI   N G+  E ++   +RD+ MSA EA
Sbjct: 121 MIHQPSGGAQGQATEISIAAEHILRTRQKLNEIMAANTGQPLETIKADTERDNFMSAEEA 180

Query: 196 CDWGVVDKVLMS 207
             +G++D+V+  
Sbjct: 181 KAYGLIDEVIAK 192


>gi|82703457|ref|YP_413023.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nitrosospira
           multiformis ATCC 25196]
 gi|110816459|sp|Q2Y6J0|CLPP_NITMU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|82411522|gb|ABB75631.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nitrosospira
           multiformis ATCC 25196]
          Length = 213

 Score =  287 bits (736), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 119/203 (58%), Positives = 161/203 (79%)

Query: 8   KKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           +++ E   LGL+PMV+E + RGER+YDIYSRLL+ER++F+ G + +  A LI AQLLFLE
Sbjct: 8   QRNHEPQDLGLIPMVIETSGRGERAYDIYSRLLRERVIFLVGPVTEASANLIVAQLLFLE 67

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           +EN  K+I  YINSPGG+V+AGMA+YDTMQFIKP +ST C+GQAASMGSLLL+AG KG R
Sbjct: 68  SENADKDIHFYINSPGGLVSAGMAVYDTMQFIKPDVSTLCIGQAASMGSLLLAAGAKGKR 127

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           F LPN+R+++HQP GGF GQASDIE HA++I+ +K RLNE+  K+ G++ E +E+  DRD
Sbjct: 128 FCLPNSRVMIHQPLGGFQGQASDIEIHAREILYLKNRLNELLSKHTGQSMETIERDTDRD 187

Query: 188 HIMSASEACDWGVVDKVLMSRID 210
           + + A ++  +G+VD VL SR +
Sbjct: 188 NFLGAEDSVKYGLVDAVLTSRGE 210


>gi|227821606|ref|YP_002825576.1| ATP-dependent Clp protease proteolytic subunit [Sinorhizobium
           fredii NGR234]
 gi|227340605|gb|ACP24823.1| ATP-dependent Clp protease proteolytic subunit [Sinorhizobium
           fredii NGR234]
          Length = 210

 Score =  287 bits (736), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 160/204 (78%), Positives = 186/204 (91%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           ++  D  + LVPMVVEQTNRGERSYDIYSRLLKERI+F+TG +EDHMATL+CAQLLFLEA
Sbjct: 2   RNPVDTAMALVPMVVEQTNRGERSYDIYSRLLKERIIFLTGPVEDHMATLVCAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI+LYINSPGGVVTAGMAIYDTMQFIKP +ST C+GQAASMGSLLL+AG K MRF
Sbjct: 62  ENPKKEIALYINSPGGVVTAGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLAAGHKDMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           A PNARI++HQPSGGF GQASDIERHA+DI+K+KRRLNE+YV++CG+TYEEVE+TLDRDH
Sbjct: 122 ATPNARIMVHQPSGGFQGQASDIERHARDILKMKRRLNEVYVRHCGRTYEEVEQTLDRDH 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIE 212
            MS+ EA DWG++DKV+ SR  IE
Sbjct: 182 FMSSDEALDWGLIDKVITSREAIE 205


>gi|322515314|ref|ZP_08068311.1| ATP-dependent Clp protease, protease subunit [Actinobacillus ureae
           ATCC 25976]
 gi|322118690|gb|EFX90902.1| ATP-dependent Clp protease, protease subunit [Actinobacillus ureae
           ATCC 25976]
          Length = 217

 Score =  287 bits (736), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 119/197 (60%), Positives = 157/197 (79%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
            +  + ++PMVVEQT++GERSYDIYSRLLKERI+F+ G++EDHMA LI AQLLFLE+E+P
Sbjct: 18  RNPKMAVIPMVVEQTSKGERSYDIYSRLLKERIIFLNGEVEDHMANLIVAQLLFLESEDP 77

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+I LYINSPGGVVTAG+AIYDTM FIKP ++T C GQA SMG+ LLS G KG RFALP
Sbjct: 78  EKDIYLYINSPGGVVTAGLAIYDTMNFIKPDVATLCTGQACSMGAFLLSGGAKGKRFALP 137

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           +AR+++HQP GG  GQA+DI+  AQ+I+K+K  L +    + G+ +E+V    +RD+ MS
Sbjct: 138 HARVMIHQPLGGARGQATDIQIQAQEILKLKEMLTKRMAGHSGQPFEKVAADTERDNFMS 197

Query: 192 ASEACDWGVVDKVLMSR 208
           A EA ++G++DKVL  R
Sbjct: 198 AFEAAEYGLIDKVLTHR 214


>gi|332172903|gb|AEE22157.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 212

 Score =  287 bits (736), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 127/201 (63%), Positives = 160/201 (79%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
              D    LVPMVVEQT +GERSYDIYSRLLKE ++F+ GQ+EDHMA LI AQ+LFLEAE
Sbjct: 4   TPFDPTNALVPMVVEQTAKGERSYDIYSRLLKENVIFMVGQVEDHMANLIVAQMLFLEAE 63

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP+K+I LYINSPGG VTAGMAIYDTM FIKP +ST C+GQAASMG+ LLS G KG R+ 
Sbjct: 64  NPEKDIFLYINSPGGSVTAGMAIYDTMNFIKPDVSTVCIGQAASMGAFLLSGGTKGKRYC 123

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPNAR+++HQP GGF GQASD E HA++I+ IK ++N +  ++ G+ YE+V +  DRD+ 
Sbjct: 124 LPNARVMIHQPLGGFQGQASDFEIHAKEILSIKEKMNRLMAEHTGQDYEKVARDTDRDNF 183

Query: 190 MSASEACDWGVVDKVLMSRID 210
           +SA E+ D+G+VD+VL +R D
Sbjct: 184 LSAQESVDYGLVDQVLANRPD 204


>gi|331090536|ref|ZP_08339389.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
           bacterium 2_1_46FAA]
 gi|330405879|gb|EGG85407.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
           bacterium 2_1_46FAA]
          Length = 193

 Score =  287 bits (736), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 112/193 (58%), Positives = 155/193 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLLK+RI+F+  ++ D  A++I AQLL LEAE+P+K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLKDRIIFLGEEVTDVSASIIVAQLLHLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG V+AG+AIYDTMQ+IK  +ST C+G AASMG+ LL+ G KG RFALPNA I
Sbjct: 61  QLYINSPGGSVSAGLAIYDTMQYIKCDVSTTCIGMAASMGAFLLAGGAKGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++I+  A+ I+K +++LNEI  +  GK++E++    +RD+ MSA EA
Sbjct: 121 MIHQPLGGAQGQATEIQIAAEHILKTRQKLNEILAERTGKSFEQISADTERDNFMSAKEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++DKV++SR
Sbjct: 181 EEYGLIDKVVVSR 193


>gi|251772219|gb|EES52789.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Leptospirillum ferrodiazotrophum]
          Length = 201

 Score =  287 bits (736), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 124/200 (62%), Positives = 165/200 (82%), Gaps = 1/200 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+PMVVEQTNRGER+YDIYSRLL++RI+ +   I+D +A L+ AQ+LFLE+E+  K+I+L
Sbjct: 2   LIPMVVEQTNRGERAYDIYSRLLRDRIIILGTPIDDTVANLVIAQMLFLESEDSSKDINL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG+VTAG+AIYDT++FIKP +ST C+GQAASMG+ LLSAG KG R+ALPNARI++
Sbjct: 62  YINSPGGIVTAGLAIYDTIKFIKPDVSTICIGQAASMGAFLLSAGAKGKRYALPNARIMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQA+DIE HA++I+K+K  LN +  ++CG+  E+V +  DRD+ MSA EA D
Sbjct: 122 HQPMGGFQGQATDIEIHAREILKLKADLNRMMSEHCGQPVEKVAQDTDRDYFMSAKEAKD 181

Query: 198 WGVVDKVLMS-RIDIEEKSK 216
           +G++D V+ S RID E+ SK
Sbjct: 182 YGLIDSVITSHRIDTEKTSK 201


>gi|171059225|ref|YP_001791574.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Leptothrix
           cholodnii SP-6]
 gi|226706459|sp|B1Y6H3|CLPP_LEPCP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|170776670|gb|ACB34809.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Leptothrix
           cholodnii SP-6]
          Length = 202

 Score =  287 bits (736), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 113/198 (57%), Positives = 156/198 (78%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E   LG+VP+V+EQ+ RGER+YDIYSRLL+ER++F+ G + D  A L+ AQLLFLE+ENP
Sbjct: 5   ETQNLGMVPIVIEQSGRGERAYDIYSRLLRERVIFLVGPVNDQSANLVVAQLLFLESENP 64

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+IS YINSPGG V+AGM+IYDTMQFIKP +ST CMG AASMG+ LL+AG KG RF+LP
Sbjct: 65  DKDISFYINSPGGSVSAGMSIYDTMQFIKPQVSTLCMGLAASMGAFLLAAGAKGKRFSLP 124

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N++I++HQP GG  GQA+DIE HA++I+K + +LN I  +  G++ E+++   +RD+ MS
Sbjct: 125 NSKIMIHQPLGGAQGQATDIEIHAREILKTREQLNRILAERTGQSLEKIQNDTERDYFMS 184

Query: 192 ASEACDWGVVDKVLMSRI 209
           + EA  +G++D+V+  R 
Sbjct: 185 SEEAQTYGLIDQVISKRP 202


>gi|125975222|ref|YP_001039132.1| ATP-dependent Clp protease proteolytic subunit ClpP [Clostridium
           thermocellum ATCC 27405]
 gi|256003116|ref|ZP_05428108.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           thermocellum DSM 2360]
 gi|281419196|ref|ZP_06250212.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           thermocellum JW20]
 gi|166201818|sp|A3DJ10|CLPP_CLOTH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|125715447|gb|ABN53939.1| ATP-dependent Clp protease proteolytic subunit ClpP [Clostridium
           thermocellum ATCC 27405]
 gi|255992807|gb|EEU02897.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           thermocellum DSM 2360]
 gi|281407062|gb|EFB37324.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           thermocellum JW20]
 gi|316939386|gb|ADU73420.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           thermocellum DSM 1313]
          Length = 194

 Score =  287 bits (735), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 117/194 (60%), Positives = 154/194 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQTNRGERSYDIYSRLLK+RI+ ++ +I D  A+L+ AQ+LFLEAE+P K+I
Sbjct: 1   MSLVPIVVEQTNRGERSYDIYSRLLKDRIIVLSDEINDVTASLVVAQMLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG AIYDTMQ++KP +ST C+G AASMG+ LL+AG KG RFALPN+ I
Sbjct: 61  QLYINSPGGSVTAGFAIYDTMQYVKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+ HA+ I+KIK +LN I  +  G+ +E++E+  +RD  MSA EA
Sbjct: 121 MIHQPLGGARGQATDIKIHAEQIIKIKNKLNRILSERTGQPFEKIERDTERDFFMSAEEA 180

Query: 196 CDWGVVDKVLMSRI 209
             +G+VD+V+  R 
Sbjct: 181 KAYGIVDEVMERRK 194


>gi|224367556|ref|YP_002601719.1| ClpP1 [Desulfobacterium autotrophicum HRM2]
 gi|259585947|sp|C0QGT0|CLPP_DESAH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|223690272|gb|ACN13555.1| ClpP1 [Desulfobacterium autotrophicum HRM2]
          Length = 205

 Score =  287 bits (735), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 115/200 (57%), Positives = 162/200 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+PMVVEQ+NRGER+YDIYSRLLK+RI+F+   ++D +A LI AQLLFLE+E+P+K+I
Sbjct: 1   MPLIPMVVEQSNRGERAYDIYSRLLKDRIIFLGSAMDDEVANLIVAQLLFLESEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           + YINSPGGVVTAGMA+YDTMQ+IKP ++T C+GQAASMG+LLL+AG KG RF+LPN+RI
Sbjct: 61  NFYINSPGGVVTAGMAVYDTMQYIKPDVATVCIGQAASMGALLLAAGAKGKRFSLPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDI+  A +I+++K  L+ I  K+ G+ ++++ +  DRD  MS  +A
Sbjct: 121 MIHQPLGGAQGQASDIKIQANEILRMKEVLSGILSKHTGQNFDKISEDTDRDFFMSGDQA 180

Query: 196 CDWGVVDKVLMSRIDIEEKS 215
            ++G+VD V+ SR ++E+  
Sbjct: 181 KEYGLVDHVVASRDELEKAE 200


>gi|197284027|ref|YP_002149899.1| ATP-dependent Clp protease proteolytic subunit [Proteus mirabilis
           HI4320]
 gi|226329068|ref|ZP_03804586.1| hypothetical protein PROPEN_02971 [Proteus penneri ATCC 35198]
 gi|227358102|ref|ZP_03842444.1| ATP-dependent Clp protease proteolytic subunit [Proteus mirabilis
           ATCC 29906]
 gi|226706465|sp|B4EU53|CLPP_PROMH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|194681514|emb|CAR40393.1| ATP-dependent Clp protease proteolytic subunit [Proteus mirabilis
           HI4320]
 gi|225202254|gb|EEG84608.1| hypothetical protein PROPEN_02971 [Proteus penneri ATCC 35198]
 gi|227161837|gb|EEI46869.1| ATP-dependent Clp protease proteolytic subunit [Proteus mirabilis
           ATCC 29906]
          Length = 207

 Score =  287 bits (735), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 130/208 (62%), Positives = 172/208 (82%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MSF    ++ + +  + LVPMV+EQT+RGERSYDIYSRLLKERI+F+TGQ+EDHMA LI 
Sbjct: 1   MSFNDTQEQFAPN--MALVPMVIEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I+LYINSPGGV+TAGM+IYDTMQ+IK  +ST CMGQA SMG+ LLS
Sbjct: 59  AQMLFLEAENPEKDINLYINSPGGVITAGMSIYDTMQYIKADVSTICMGQACSMGAFLLS 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG R  LPN+R+++HQP GG+ GQA+DI+ HAQ+I+K+K R+NE+  ++ GK+ EE+
Sbjct: 119 AGAKGKRICLPNSRVMIHQPLGGYQGQATDIQIHAQEILKVKSRMNELMAQHTGKSIEEI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SA+EA ++G+VDKV   R
Sbjct: 179 ERDTERDRFLSANEALEYGLVDKVYTQR 206


>gi|126700924|ref|YP_001089821.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile 630]
 gi|254976904|ref|ZP_05273376.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile QCD-66c26]
 gi|255094290|ref|ZP_05323768.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile CIP 107932]
 gi|255308377|ref|ZP_05352548.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile ATCC 43255]
 gi|255316044|ref|ZP_05357627.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile QCD-76w55]
 gi|255518701|ref|ZP_05386377.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile QCD-97b34]
 gi|255651823|ref|ZP_05398725.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile QCD-37x79]
 gi|255657263|ref|ZP_05402672.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile QCD-23m63]
 gi|260684849|ref|YP_003216134.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile CD196]
 gi|260688507|ref|YP_003219641.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile R20291]
 gi|296451896|ref|ZP_06893613.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile NAP08]
 gi|296879709|ref|ZP_06903684.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile NAP07]
 gi|306521610|ref|ZP_07407957.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile QCD-32g58]
 gi|115252361|emb|CAJ70202.1| ATP-dependent Clp protease proteolytic subunit 1 [Clostridium
           difficile]
 gi|260211012|emb|CBA66324.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile CD196]
 gi|260214524|emb|CBE07039.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile R20291]
 gi|296259278|gb|EFH06156.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile NAP08]
 gi|296429298|gb|EFH15170.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile NAP07]
          Length = 194

 Score =  287 bits (735), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 117/194 (60%), Positives = 151/194 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQT RGERSYDI+SRLLK+RI+F+  Q+ D  A LI AQLLFLEAE+P K+I
Sbjct: 1   MALVPVVVEQTGRGERSYDIFSRLLKDRIIFLGDQVNDATAGLIVAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +T+GMAIYDTMQ+IKP +ST C+G AASMG+ LL+AG KG R ALPN+ I
Sbjct: 61  HLYINSPGGSITSGMAIYDTMQYIKPDVSTICIGMAASMGAFLLAAGAKGKRLALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DIE HA+ I+KIK  LNEI  +  G+  E+++   +RD+ MSA EA
Sbjct: 121 MIHQPLGGAQGQATDIEIHAKRILKIKETLNEILSERTGQPLEKIKMDTERDNFMSALEA 180

Query: 196 CDWGVVDKVLMSRI 209
            ++G++D+V   R 
Sbjct: 181 KEYGLIDEVFTKRP 194


>gi|153854553|ref|ZP_01995823.1| hypothetical protein DORLON_01818 [Dorea longicatena DSM 13814]
 gi|149752862|gb|EDM62793.1| hypothetical protein DORLON_01818 [Dorea longicatena DSM 13814]
          Length = 193

 Score =  287 bits (735), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 111/193 (57%), Positives = 149/193 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLLK+RI+F+  ++ D  A++I AQLLFLEAE+P+K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLKDRIIFLGEEVTDVSASVIVAQLLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMAIYDTMQ+IK  I T C+G AASMGS LL+ G KG R ALPN+ I
Sbjct: 61  HLYINSPGGSVTAGMAIYDTMQYIKCDIETICIGMAASMGSFLLTGGTKGKRLALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++I+  A  I+K +++LN+I  +N G+  E +    +RD+ M+A EA
Sbjct: 121 MIHQPLGGAQGQATEIQIAADHILKTRQKLNQILAENTGQPLEVINADTERDNFMTAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D+V+ SR
Sbjct: 181 KAYGLIDEVIKSR 193


>gi|237747781|ref|ZP_04578261.1| ATP-dependent Clp protease proteolytic subunit [Oxalobacter
           formigenes OXCC13]
 gi|229379143|gb|EEO29234.1| ATP-dependent Clp protease proteolytic subunit [Oxalobacter
           formigenes OXCC13]
          Length = 207

 Score =  287 bits (735), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 126/198 (63%), Positives = 160/198 (80%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           +   LG++PMV+EQ+ RGER+YDIYSRLLKERIVF+ G + D  A LI AQLLFLE+ENP
Sbjct: 10  DTRMLGMIPMVIEQSGRGERAYDIYSRLLKERIVFLVGPVMDQNANLIVAQLLFLESENP 69

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+ISLYINSPGG V+AGMAIYDTMQFIKP +ST C G AASMG+ LL+AGEKG RF+LP
Sbjct: 70  DKDISLYINSPGGSVSAGMAIYDTMQFIKPQVSTLCTGLAASMGAFLLAAGEKGKRFSLP 129

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+RI++HQPSGG  GQA+DIE HA++I+ ++ RLN I   N GK+ E+V +  +RD+ MS
Sbjct: 130 NSRIMIHQPSGGAQGQATDIEIHAREILYLRERLNGILADNTGKSIEQVARDTERDNFMS 189

Query: 192 ASEACDWGVVDKVLMSRI 209
           A+EA D+G++D VL  R+
Sbjct: 190 ANEAKDYGLIDDVLSKRM 207


>gi|268592036|ref|ZP_06126257.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Providencia
           rettgeri DSM 1131]
 gi|291312428|gb|EFE52881.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Providencia
           rettgeri DSM 1131]
          Length = 206

 Score =  287 bits (735), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 132/208 (63%), Positives = 171/208 (82%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS  G  ++ +    + LVPMV+EQT+RGERSYDIYSRLLKERI+F+TGQ+EDHMA LI 
Sbjct: 1   MSHFGSQEQLASQ--MALVPMVIEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIHLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQASDIE HAQ+I+K+K R+NE+   + GK+ EE+
Sbjct: 119 AGTKGKRFCLPNSRVMIHQPLGGYQGQASDIEIHAQEILKVKSRMNELMALHTGKSIEEI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
            +  +RD  +SA+EA ++G+VD++  SR
Sbjct: 179 TRDTERDRFLSANEAKEYGLVDQIYSSR 206


>gi|296136117|ref|YP_003643359.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thiomonas
           intermedia K12]
 gi|295796239|gb|ADG31029.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thiomonas
           intermedia K12]
          Length = 202

 Score =  287 bits (735), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 118/193 (61%), Positives = 155/193 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LGLVPMV+EQ+ RGER+YDIYSRLL+ER++F+ G I D MA L+ AQLLFLE+ENP K+I
Sbjct: 9   LGLVPMVIEQSGRGERAYDIYSRLLRERVIFLVGPINDQMANLVVAQLLFLESENPDKDI 68

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG V+AGMAI+DTMQFIKP +ST C G AASMG+ L++AG KG R++LPN+RI
Sbjct: 69  SLYINSPGGSVSAGMAIFDTMQFIKPDVSTLCTGIAASMGAFLMAAGAKGKRYSLPNSRI 128

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+DIE  A++I+ ++ RLN I  +  G+T E++    +RD  MSA EA
Sbjct: 129 MIHQPSGGAQGQATDIEIQAREILYLRERLNGILAERTGQTLEKIGIDTERDFFMSAEEA 188

Query: 196 CDWGVVDKVLMSR 208
            D+G++D+V+  R
Sbjct: 189 KDYGLIDEVISKR 201


>gi|71066496|ref|YP_265223.1| ATP-dependent Clp protease proteolytic subunit [Psychrobacter
           arcticus 273-4]
 gi|110816464|sp|Q4FQB9|CLPP_PSYA2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|71039481|gb|AAZ19789.1| ATP-dependent Clp protease proteolytic subunit ClpP [Psychrobacter
           arcticus 273-4]
          Length = 225

 Score =  287 bits (735), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 123/209 (58%), Positives = 165/209 (78%), Gaps = 3/209 (1%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS     +  ++     LVPMVVEQ+ RGERS+DI+SRLL+ER++F+TGQ+EDHMA LI 
Sbjct: 17  MSAHNHVQSTTQ---SALVPMVVEQSARGERSFDIFSRLLRERVIFLTGQVEDHMANLIV 73

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLEAENP K+I LYINSPGG V+AG+AI+DTM FIKP +ST CMG A SMGS LL+
Sbjct: 74  AQLLFLEAENPDKDIHLYINSPGGSVSAGLAIFDTMNFIKPEVSTICMGGAYSMGSFLLA 133

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG+KG R+AL NAR+++HQPSGG  GQA+DIE +A++I+K + RLNEI  +  G++ E++
Sbjct: 134 AGQKGKRYALANARVMIHQPSGGAQGQATDIEINAREILKTRARLNEILAERTGQSVEKI 193

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           EK ++RD+ + A EA ++G++D+VL  R 
Sbjct: 194 EKDVERDYWLDAKEAKEYGLIDEVLERRP 222


>gi|121635023|ref|YP_975268.1| endopeptidase [Neisseria meningitidis FAM18]
 gi|161870184|ref|YP_001599354.1| ATP-dependent Clp protease, proteolytic subunit [Neisseria
           meningitidis 053442]
 gi|166201829|sp|A1KUD9|CLPP_NEIMF RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|189082461|sp|A9LZN9|CLPP_NEIM0 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|120866729|emb|CAM10482.1| endopeptidase [Neisseria meningitidis FAM18]
 gi|161595737|gb|ABX73397.1| ATP-dependent Clp protease, proteolytic subunit [Neisseria
           meningitidis 053442]
 gi|261392408|emb|CAX49950.1| ATP-dependent Clp protease proteolytic subunit (endopeptidase Clp)
           [Neisseria meningitidis 8013]
 gi|325128392|gb|EGC51275.1| endopeptidase Clp [Neisseria meningitidis N1568]
 gi|325130325|gb|EGC53091.1| endopeptidase Clp [Neisseria meningitidis OX99.30304]
 gi|325132488|gb|EGC55181.1| endopeptidase Clp [Neisseria meningitidis M6190]
 gi|325134447|gb|EGC57092.1| endopeptidase Clp [Neisseria meningitidis M13399]
 gi|325136185|gb|EGC58793.1| endopeptidase Clp [Neisseria meningitidis M0579]
 gi|325138262|gb|EGC60831.1| endopeptidase Clp [Neisseria meningitidis ES14902]
 gi|325142516|gb|EGC64917.1| endopeptidase Clp [Neisseria meningitidis 961-5945]
 gi|325198463|gb|ADY93919.1| endopeptidase Clp [Neisseria meningitidis G2136]
 gi|325201978|gb|ADY97432.1| endopeptidase Clp [Neisseria meningitidis M01-240149]
 gi|325204312|gb|ADY99765.1| endopeptidase Clp [Neisseria meningitidis M01-240355]
 gi|325208271|gb|ADZ03723.1| endopeptidase Clp [Neisseria meningitidis NZ-05/33]
          Length = 204

 Score =  287 bits (735), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 122/197 (61%), Positives = 159/197 (80%), Gaps = 2/197 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ+ RGER++DIYSRLLKERIVF+ G + D  A L+ AQLLFLE+ENP K+I  
Sbjct: 7   LVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFF 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM+IYDTM FIKP +ST C+GQAASMG+ LLSAGEKG RFALPN+RI++
Sbjct: 67  YINSPGGSVTAGMSIYDTMNFIKPDVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMI 126

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASDIE HA++++KIK +LN +  K+CG+   ++E+  DRD+ MSA EA
Sbjct: 127 HQPLISGGLGGQASDIEIHARELLKIKEKLNRLMAKHCGRDLADLERDTDRDNFMSAEEA 186

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G++D++L +R  ++
Sbjct: 187 KEYGLIDQILENRASLQ 203


>gi|297250503|ref|ZP_06864443.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
           polysaccharea ATCC 43768]
 gi|296838809|gb|EFH22747.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
           polysaccharea ATCC 43768]
          Length = 209

 Score =  287 bits (735), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 123/197 (62%), Positives = 160/197 (81%), Gaps = 2/197 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ+ RGER++DIYSRLLKERIVF+ G + D  A L+ AQLLFLE+ENP K+I  
Sbjct: 12  LVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFF 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM+IYDTM FIKP +ST C+GQAASMG+ LLSAGEKG RFALPN+RI++
Sbjct: 72  YINSPGGSVTAGMSIYDTMNFIKPDVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMI 131

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASDIE HA++++KIK +LN +  K+CG+   ++E+  DRD+ MSA EA
Sbjct: 132 HQPLISGGLGGQASDIEIHARELLKIKEKLNRLMAKHCGRDLADLERDTDRDNFMSAEEA 191

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G++D+VL +R+ ++
Sbjct: 192 KEYGLIDQVLENRVSLQ 208


>gi|213521159|gb|ACJ50516.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           fluorescens]
          Length = 211

 Score =  287 bits (735), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 125/193 (64%), Positives = 159/193 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMVVEQ+ RGER+YDIYSRLLKER++F+ G +ED+MA LICAQLLFLEAENP K+I 
Sbjct: 18  GLVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIH 77

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+ LL+AG +G RF LPN+R++
Sbjct: 78  LYINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGAFLLTAGAEGKRFCLPNSRVM 137

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+ I+ RLN +  K+ G+T EE+E+  +RD+ MSA  A 
Sbjct: 138 IHQPLGGFQGQASDIEIHAKEILFIRERLNTLMAKHSGRTLEEIERDTNRDNFMSAEAAK 197

Query: 197 DWGVVDKVLMSRI 209
           ++G++D V+  R 
Sbjct: 198 EYGLIDAVIDKRP 210


>gi|323465060|gb|ADX77213.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus pseudintermedius ED99]
          Length = 195

 Score =  287 bits (735), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 105/194 (54%), Positives = 148/194 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+E TNRGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL+A++ +K+I
Sbjct: 1   MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLQAQDAEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG AIYDT+Q IKP + T C+G AASMGS LL+AG KG RFALPNA +
Sbjct: 61  YLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I++ + RLN+I  +  G+  E++EK  DRD+ ++A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKHILRTRERLNKILSERTGQPIEKIEKDTDRDNFLTAQEA 180

Query: 196 CDWGVVDKVLMSRI 209
            ++G++D+V+    
Sbjct: 181 KEYGLIDEVMEPEK 194


>gi|238795542|ref|ZP_04639057.1| ATP-dependent Clp protease proteolytic subunit [Yersinia mollaretii
           ATCC 43969]
 gi|238720661|gb|EEQ12462.1| ATP-dependent Clp protease proteolytic subunit [Yersinia mollaretii
           ATCC 43969]
          Length = 194

 Score =  287 bits (735), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 129/193 (66%), Positives = 162/193 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT+RGERSYDI+SRLLKERI+F+TGQ+EDHMA LI AQ+LFLEAENP+K+I
Sbjct: 1   MALVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDHMANLITAQMLFLEAENPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+AG KG RF LPN+R+
Sbjct: 61  FLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLTAGAKGKRFCLPNSRV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DIE HA++I+K+K R+NE+   + GK+ EE+E+  +RD  +SA EA
Sbjct: 121 MIHQPLGGFQGQATDIEIHAREILKVKSRMNELMALHTGKSLEEIERDTERDRFLSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD V   R
Sbjct: 181 VGYGLVDSVFTRR 193


>gi|210615408|ref|ZP_03290535.1| hypothetical protein CLONEX_02751 [Clostridium nexile DSM 1787]
 gi|210150257|gb|EEA81266.1| hypothetical protein CLONEX_02751 [Clostridium nexile DSM 1787]
          Length = 193

 Score =  287 bits (735), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 110/192 (57%), Positives = 154/192 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++P V+EQT+RGERSYDIYSRLLKERI+F+  ++ D  A++I AQLLFLE E+P+K+I
Sbjct: 1   MSVIPYVIEQTSRGERSYDIYSRLLKERIIFLGEEVTDASASVIIAQLLFLEGEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG V+AG+AIYDTMQ+IK  +ST C+G AASMGS LLS G+KG R+ALPNA I
Sbjct: 61  HLYINSPGGSVSAGLAIYDTMQYIKCDVSTICIGMAASMGSFLLSGGKKGKRYALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++I+  A+ I+K +++LN I  +N G++ E+++   +RD+ MSA EA
Sbjct: 121 MIHQPLGGAQGQATEIQIAAEHILKTRQKLNTILAENTGQSLEKIQADTERDNFMSAQEA 180

Query: 196 CDWGVVDKVLMS 207
            ++G+VD+V+ S
Sbjct: 181 KEYGLVDEVIAS 192


>gi|296112317|ref|YP_003626255.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
           catarrhalis RH4]
 gi|295920011|gb|ADG60362.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
           catarrhalis RH4]
          Length = 217

 Score =  287 bits (734), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 128/194 (65%), Positives = 163/194 (84%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMV+EQ+ RGERS+DI+SRLL+ER++F+TGQ+ED+MA LI AQLLFLEA+NP+K+I 
Sbjct: 22  ALVPMVIEQSGRGERSFDIFSRLLRERVIFLTGQVEDNMANLIVAQLLFLEADNPEKDIH 81

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGVVTAGMAIYDTM FIKP +ST CMGQAASMGS LLSAGEKG R+AL N+R++
Sbjct: 82  LYINSPGGVVTAGMAIYDTMNFIKPHVSTICMGQAASMGSFLLSAGEKGKRYALANSRVM 141

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+++K +LN +  ++ G+  E++E+  DRDH MSA +A 
Sbjct: 142 IHQPLGGFRGQASDIEIHAREIIELKAKLNRLLAEHTGQPIEKLERDTDRDHFMSAEQAR 201

Query: 197 DWGVVDKVLMSRID 210
           D+G+VD VL  R  
Sbjct: 202 DYGLVDVVLDKRPK 215


>gi|194595677|gb|ACF77120.1| ATP-dependent Clp protease proteolytic subunit [Azospirillum
           brasilense]
          Length = 210

 Score =  287 bits (734), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 126/201 (62%), Positives = 164/201 (81%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
            D E     LVPMV+EQTNRGER+YDIYSRLLKERI+F+ G + D +A+LIC+QLLFLE+
Sbjct: 2   YDFEPKMNALVPMVIEQTNRGERAYDIYSRLLKERIIFLIGGVNDAVASLICSQLLFLES 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP K+I+LYINSPGG V+AG+AIYDTMQ+I+P +ST CMGQAASMGSLLL+AG  G RF
Sbjct: 62  ENPSKDIALYINSPGGYVSAGLAIYDTMQYIRPQVSTVCMGQAASMGSLLLAAGAPGKRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPN+RI++HQPSGG  GQASDIE  AQ+I+K++ RLN+IYVK+ G++ + +E  ++RD 
Sbjct: 122 SLPNSRIMIHQPSGGAQGQASDIEIQAQEILKLRSRLNDIYVKHTGQSLDTIEAAMERDK 181

Query: 189 IMSASEACDWGVVDKVLMSRI 209
            MS  EA  +G++D+V+  R 
Sbjct: 182 FMSPEEAKAFGLIDEVVEKRP 202


>gi|260887080|ref|ZP_05898343.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Selenomonas
           sputigena ATCC 35185]
 gi|330839143|ref|YP_004413723.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Selenomonas
           sputigena ATCC 35185]
 gi|260863142|gb|EEX77642.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Selenomonas
           sputigena ATCC 35185]
 gi|329746907|gb|AEC00264.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Selenomonas
           sputigena ATCC 35185]
          Length = 206

 Score =  287 bits (734), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 114/204 (55%), Positives = 161/204 (78%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
                 VPMVVE++NRGER+YDIYSRLLK+RIVFV G I+D++A ++ AQLLFLE+E+P 
Sbjct: 3   SYMNSYVPMVVERSNRGERAYDIYSRLLKDRIVFVGGPIDDNVANVVVAQLLFLESEDPD 62

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K+I LYINSPGGVVTAG+AIYDTMQ+I+P +ST C+GQAASMGSLLL+AG KG R+ALP 
Sbjct: 63  KDIHLYINSPGGVVTAGLAIYDTMQYIRPDVSTICIGQAASMGSLLLTAGAKGKRYALPL 122

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           ARI++HQP GG  GQ++DI+  A++I++++   N+I  K+ G+  E++    +RD+ M+A
Sbjct: 123 ARIMIHQPLGGAQGQSTDIQIQAKEILRLREVGNDILAKHTGQPREKLIADTERDNFMTA 182

Query: 193 SEACDWGVVDKVLMSRIDIEEKSK 216
            EA ++G++D+V+   + IE+  +
Sbjct: 183 EEAKEYGLIDEVITRPVKIEKPKE 206


>gi|146307078|ref|YP_001187543.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           mendocina ymp]
 gi|166214700|sp|A4XTZ5|CLPP_PSEMY RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|145575279|gb|ABP84811.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pseudomonas
           mendocina ymp]
          Length = 213

 Score =  287 bits (734), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 124/192 (64%), Positives = 156/192 (81%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+EQ+ RGER+YDIYSRLLKER++F+ GQ+ED+MA LICAQLLFLEAENP K+I 
Sbjct: 18  GLVPMVIEQSARGERAYDIYSRLLKERVIFLVGQVEDYMANLICAQLLFLEAENPDKDIH 77

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGMAIYDTMQFIK  +ST C+GQA SMG+ LL+ G KG RF LPN+R++
Sbjct: 78  LYINSPGGSVTAGMAIYDTMQFIKADVSTTCIGQACSMGAFLLAGGAKGKRFCLPNSRVM 137

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+ I+ RLNE+   + G++ E +E+  +RD+ MSA  A 
Sbjct: 138 IHQPLGGFQGQASDIEIHAKEILFIRERLNELLAHHTGQSLETIERDTNRDNFMSAPRAV 197

Query: 197 DWGVVDKVLMSR 208
           ++G+VD V   R
Sbjct: 198 EYGIVDAVHEKR 209


>gi|326561827|gb|EGE12162.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
           catarrhalis 7169]
 gi|326563259|gb|EGE13526.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
           catarrhalis 46P47B1]
 gi|326563373|gb|EGE13638.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
           catarrhalis 12P80B1]
 gi|326565911|gb|EGE16072.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
           catarrhalis 103P14B1]
 gi|326568952|gb|EGE19021.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
           catarrhalis BC1]
 gi|326569251|gb|EGE19312.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
           catarrhalis BC7]
 gi|326571926|gb|EGE21931.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
           catarrhalis BC8]
 gi|326575439|gb|EGE25364.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
           catarrhalis 101P30B1]
 gi|326576473|gb|EGE26381.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
           catarrhalis CO72]
 gi|326577944|gb|EGE27808.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
           catarrhalis O35E]
          Length = 217

 Score =  287 bits (734), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 128/194 (65%), Positives = 163/194 (84%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMV+EQ+ RGERS+DI+SRLL+ER++F+TGQ+ED+MA LI AQLLFLEA+NP+K+I 
Sbjct: 22  ALVPMVIEQSGRGERSFDIFSRLLRERVIFLTGQVEDNMANLIVAQLLFLEADNPEKDIH 81

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGVVTAGMAIYDTM FIKP +ST CMGQAASMGS LLSAGEKG R+AL N+R++
Sbjct: 82  LYINSPGGVVTAGMAIYDTMNFIKPHVSTICMGQAASMGSFLLSAGEKGKRYALANSRVM 141

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+++K +LN +  ++ G+  E++E+  DRDH MSA +A 
Sbjct: 142 IHQPLGGFRGQASDIEIHAREIIELKAKLNRLLAEHTGQPIEKLERDTDRDHFMSAEQAR 201

Query: 197 DWGVVDKVLMSRID 210
           D+G+VD VL  R  
Sbjct: 202 DYGLVDVVLDKRPK 215


>gi|190573022|ref|YP_001970867.1| ATP-dependent Clp protease proteolytic subunit [Stenotrophomonas
           maltophilia K279a]
 gi|194364614|ref|YP_002027224.1| ATP-dependent Clp protease proteolytic subunit [Stenotrophomonas
           maltophilia R551-3]
 gi|226706475|sp|B2FQR2|CLPP_STRMK RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|190010944|emb|CAQ44553.1| ATP-dependent clp protease proteolytic subunit [Stenotrophomonas
           maltophilia K279a]
 gi|194347418|gb|ACF50541.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Stenotrophomonas maltophilia R551-3]
          Length = 208

 Score =  287 bits (734), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 124/201 (61%), Positives = 167/201 (83%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           D+    L LVPMVVEQT+RGER+YDIYSRLLKER++F+ G I+DHMA ++ AQLLFLE+E
Sbjct: 2   DNRTKALNLVPMVVEQTSRGERAYDIYSRLLKERLIFLVGPIDDHMANVVVAQLLFLESE 61

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP+K+I++YINSPGGVVTAGMAIYDTMQ+IKP +ST C+GQAASMG+LLL+AGE G R+A
Sbjct: 62  NPEKDINIYINSPGGVVTAGMAIYDTMQYIKPNVSTTCIGQAASMGALLLAAGEAGKRYA 121

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPN+R+++HQP GG+ GQA+DI+ HA++I+ ++ RLNE+  K+ G++ E + +  +RD+ 
Sbjct: 122 LPNSRVMIHQPLGGYQGQATDIDIHAREILTLRSRLNEVLAKHTGQSLETIARDTERDNF 181

Query: 190 MSASEACDWGVVDKVLMSRID 210
            SA EA  +G+VD+VL  R D
Sbjct: 182 KSAFEAQAYGLVDQVLERRPD 202


>gi|160893842|ref|ZP_02074625.1| hypothetical protein CLOL250_01396 [Clostridium sp. L2-50]
 gi|156864494|gb|EDO57925.1| hypothetical protein CLOL250_01396 [Clostridium sp. L2-50]
          Length = 193

 Score =  287 bits (734), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 114/193 (59%), Positives = 149/193 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLLK+RI+F+  ++ D  A+++ AQLLFLE+E+P K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLKDRIIFLGEEVNDTSASIVIAQLLFLESEDPSKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG VTAG+ IYDTMQ+IK  +ST C G AASMG+ LL+ G KG RFALPNA I
Sbjct: 61  SLYINSPGGSVTAGLGIYDTMQYIKCDVSTICCGMAASMGAFLLAGGAKGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++IE  A+ I+K K +LN +  +N GK YE +    +RD+ MSA EA
Sbjct: 121 MIHQPSGGSQGQATEIEIAAKHILKTKEKLNRMLSENTGKPYETIAADTERDNWMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
           C +G++D V+  R
Sbjct: 181 CAYGLIDSVIAKR 193


>gi|254492068|ref|ZP_05105244.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylophaga
           thiooxidans DMS010]
 gi|224462732|gb|EEF79005.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylophaga
           thiooxydans DMS010]
          Length = 212

 Score =  287 bits (734), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 121/212 (57%), Positives = 162/212 (76%), Gaps = 1/212 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           M+ +  A+ +   +   LVP+VVEQT+RGERSYDIYSRLLKER++F+ G +ED MA LI 
Sbjct: 1   MTNKFSAE-EFTGIQNALVPIVVEQTSRGERSYDIYSRLLKERVIFLVGPVEDQMANLIV 59

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE+ENP K+I LYINSPGG VTAGMAIYDTMQF+KP +ST C+GQAASMG++LL+
Sbjct: 60  AQLLFLESENPDKDIHLYINSPGGAVTAGMAIYDTMQFVKPNVSTLCIGQAASMGAVLLA 119

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
            G +G R  LPN+RI++HQP GGF GQASD + HA++I+ I+ RLN I   + G+  E +
Sbjct: 120 GGAEGKRHCLPNSRIMVHQPLGGFQGQASDFDIHAKEILSIRDRLNGILAHHTGQDIEAI 179

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
            +  DRD+ M+  +A ++G++D VL SR + +
Sbjct: 180 RRDTDRDNFMNGEQALEYGLIDSVLTSRPEEK 211


>gi|258544428|ref|ZP_05704662.1| endopeptidase Clp [Cardiobacterium hominis ATCC 15826]
 gi|258520317|gb|EEV89176.1| endopeptidase Clp [Cardiobacterium hominis ATCC 15826]
          Length = 206

 Score =  287 bits (734), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 121/196 (61%), Positives = 158/196 (80%), Gaps = 2/196 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+PMVVEQT RGERSYDIYSRLLKER++F+ G + D  A L+ AQ+LFLEAENP ++I L
Sbjct: 8   LIPMVVEQTGRGERSYDIYSRLLKERVIFLVGPVNDASANLVVAQMLFLEAENPDQDIHL 67

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM++YDTM FIKP +ST C+GQAASMG++LL+AG KG RFALP++R+++
Sbjct: 68  YINSPGGSVTAGMSVYDTMNFIKPDVSTLCLGQAASMGAMLLTAGAKGKRFALPHSRVMI 127

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASDIE HA++++K+K  LNE+  K+ G+  E++E+  DRD+ MSA EA
Sbjct: 128 HQPLISGGLGGQASDIEIHARELLKMKATLNELLAKHSGQPLEKIERDTDRDNFMSAEEA 187

Query: 196 CDWGVVDKVLMSRIDI 211
             +G++D V  +R DI
Sbjct: 188 AAYGLIDHVTTARADI 203


>gi|254805112|ref|YP_003083333.1| ATP-dependent Clp protease, proteolytic subunit [Neisseria
           meningitidis alpha14]
 gi|254668654|emb|CBA06317.1| ATP-dependent Clp protease, proteolytic subunit [Neisseria
           meningitidis alpha14]
          Length = 204

 Score =  287 bits (734), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 122/197 (61%), Positives = 159/197 (80%), Gaps = 2/197 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ+ RGER++DIYSRLLKERIVF+ G + D  A L+ AQLLFLE+ENP K+I  
Sbjct: 7   LVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFF 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM+IYDTM FIKP +ST C+GQAASMG+ LLSAGEKG RFALPN+RI++
Sbjct: 67  YINSPGGSVTAGMSIYDTMNFIKPDVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMI 126

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASDIE HA++++KIK +LN +  K+CG+   ++E+  DRD+ MSA EA
Sbjct: 127 HQPLISGGLGGQASDIEIHARELLKIKEKLNRLMAKHCGRDLADLERDTDRDNFMSAEEA 186

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G++D++L +R  ++
Sbjct: 187 KEYGLIDQILENRASLQ 203


>gi|70731346|ref|YP_261087.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           fluorescens Pf-5]
 gi|110816462|sp|Q4K9J6|CLPP_PSEF5 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|68345645|gb|AAY93251.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
           fluorescens Pf-5]
          Length = 211

 Score =  287 bits (734), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 125/193 (64%), Positives = 159/193 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMVVEQ+ RGER+YDIYSRLLKER++F+ G +ED+MA LICAQLLFLEAENP K+I 
Sbjct: 18  GLVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIH 77

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+ LL+AG  G RF LPN+R++
Sbjct: 78  LYINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGAFLLTAGAPGKRFCLPNSRVM 137

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+ I+ RLN +  K+ G+T EE+E+  +RD+ MSA  A 
Sbjct: 138 IHQPLGGFQGQASDIEIHAKEILFIRERLNTLMAKHSGRTLEEIERDTNRDNFMSAEAAR 197

Query: 197 DWGVVDKVLMSRI 209
           ++G++D+V+  R 
Sbjct: 198 EYGLIDEVINQRP 210


>gi|292487467|ref|YP_003530339.1| ATP-dependent Clp protease proteolytic subunit ClpP [Erwinia
           amylovora CFBP1430]
 gi|292898709|ref|YP_003538078.1| ATP-dependent clp protease proteolytic subunit [Erwinia amylovora
           ATCC 49946]
 gi|291198557|emb|CBJ45665.1| ATP-dependent clp protease proteolytic subunit [Erwinia amylovora
           ATCC 49946]
 gi|291552886|emb|CBA19931.1| ATP-dependent Clp protease proteolytic subunit clpP [Erwinia
           amylovora CFBP1430]
 gi|312171571|emb|CBX79829.1| ATP-dependent Clp protease proteolytic subunit clpP [Erwinia
           amylovora ATCC BAA-2158]
          Length = 207

 Score =  287 bits (734), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 132/208 (63%), Positives = 171/208 (82%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  +++     + LVPMVVEQT+RGERSYDIYSRLLKERI+F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--ERELTAPHMALVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIHLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG R+ LPN+R+++HQP GGF GQASDI+ HA++I+K K+ +NE+  K+ G+T E +
Sbjct: 119 AGAKGKRYCLPNSRVMIHQPLGGFQGQASDIDIHAREIIKTKQMMNELMAKHTGQTIENI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SASE+ ++G+VD VL  R
Sbjct: 179 ERDTNRDRFLSASESVEYGLVDSVLSQR 206


>gi|261364459|ref|ZP_05977342.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
           mucosa ATCC 25996]
 gi|288567379|gb|EFC88939.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
           mucosa ATCC 25996]
          Length = 206

 Score =  287 bits (734), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 123/197 (62%), Positives = 159/197 (80%), Gaps = 2/197 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ+ RGER++DIYSRLLKERIVF+ G + D  A L+ AQLLFLE+ENP K+I  
Sbjct: 9   LVPTVIEQSGRGERAFDIYSRLLKERIVFLIGPVTDESANLVVAQLLFLESENPDKDIFF 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM+IYDTM FIKP +ST C+GQAASMG+ LLSAGEKG RFALPN+RI++
Sbjct: 69  YINSPGGSVTAGMSIYDTMNFIKPNVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMI 128

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASDIE HA++++KIK +LN +  K+CG+   ++E+  DRD+ MSA EA
Sbjct: 129 HQPLISGGLGGQASDIEIHARELLKIKEKLNRLMAKHCGRDLADLERDTDRDNFMSAEEA 188

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G++D+VL +R  ++
Sbjct: 189 KEYGLIDQVLENRASLQ 205


>gi|146295915|ref|YP_001179686.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|166201809|sp|A4XHW0|CLPP_CALS8 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|145409491|gb|ABP66495.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 195

 Score =  287 bits (734), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 118/195 (60%), Positives = 154/195 (78%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
              LVP+V+EQTNRGER+YDIYSRLLK+RIV ++G+I D +A+LI AQLLFLEAE+P K+
Sbjct: 1   MSALVPIVIEQTNRGERAYDIYSRLLKDRIVILSGEITDDIASLIVAQLLFLEAEDPDKD 60

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I LYINSPGG VTAG AIYDT+Q+IKP +ST C+G AASMG+ LL+AG KG RFALPN+ 
Sbjct: 61  IYLYINSPGGSVTAGFAIYDTIQYIKPDVSTICVGMAASMGAFLLAAGAKGKRFALPNSE 120

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQP GG  GQA+DI+ HA+ I+KIK+R+N I  +  G+  E +E+  +RD  M+A E
Sbjct: 121 IMIHQPIGGVRGQATDIKIHAEWILKIKQRINRILAERTGQPIEVIERDTERDFFMTAEE 180

Query: 195 ACDWGVVDKVLMSRI 209
           A  +G++DKV+  R 
Sbjct: 181 ALKYGIIDKVIERRP 195


>gi|148652118|ref|YP_001279211.1| ATP-dependent Clp protease proteolytic subunit [Psychrobacter sp.
           PRwf-1]
 gi|148571202|gb|ABQ93261.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Psychrobacter
           sp. PRwf-1]
          Length = 240

 Score =  287 bits (734), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 118/210 (56%), Positives = 161/210 (76%)

Query: 4   EGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQL 63
                         LVPMVVEQ+ RGERS+DIYSRLL+ER++F+TGQ+ED+MA LI AQ+
Sbjct: 31  RNMRDATVSVPQAALVPMVVEQSARGERSFDIYSRLLRERVIFLTGQVEDNMANLIVAQM 90

Query: 64  LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           LFLEAENP+K+I LYINSPGG V+AG+A++DTM FIKP +ST CMG A SMGS LL+AG+
Sbjct: 91  LFLEAENPEKDIHLYINSPGGSVSAGLAMFDTMNFIKPDVSTICMGGAYSMGSFLLAAGQ 150

Query: 124 KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
           KG R+AL N+R+++HQPSGG  GQA+DIE +A++I+KI+ RLN I  +  G+  E++E+ 
Sbjct: 151 KGKRYALANSRVMIHQPSGGAQGQATDIEINAREILKIRDRLNRILAERTGQPLEKIERD 210

Query: 184 LDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
           ++RD+ + A EA  +G+VD+VL  R +  +
Sbjct: 211 VERDYWLDAQEAKAYGLVDEVLERRPEEAK 240


>gi|6685315|sp|Q9X6W8|CLPP_AZOBR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|5002357|gb|AAD37435.1|AF150957_2 heat-shock protein ClpP [Azospirillum brasilense]
          Length = 210

 Score =  287 bits (734), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 126/201 (62%), Positives = 163/201 (81%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
            D E     LVPMV+EQTNRGER YDIYSRLLKERI+F+ G + D +A+LIC+QLLFLE+
Sbjct: 2   YDFEPKMNALVPMVIEQTNRGERGYDIYSRLLKERIIFLIGGVNDAVASLICSQLLFLES 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP K+I+LYINSPGG V+AG+AIYDTMQ+I+P +ST CMGQAASMGSLLL+AG  G RF
Sbjct: 62  ENPSKDIALYINSPGGYVSAGLAIYDTMQYIRPQVSTVCMGQAASMGSLLLAAGAPGKRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPN+RI++HQPSGG  GQASDIE  AQ+I+K++ RLN+IYVK+ G++ + +E  ++RD 
Sbjct: 122 SLPNSRIMIHQPSGGAQGQASDIEIQAQEILKLRSRLNDIYVKHTGQSLDTIEAXMERDK 181

Query: 189 IMSASEACDWGVVDKVLMSRI 209
            MS  EA  +G++D+V+  R 
Sbjct: 182 FMSPEEAKAFGLIDEVVEKRP 202


>gi|238026973|ref|YP_002911204.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia glumae
           BGR1]
 gi|237876167|gb|ACR28500.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia glumae
           BGR1]
          Length = 217

 Score =  287 bits (734), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 123/204 (60%), Positives = 157/204 (76%)

Query: 6   CAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF 65
            A +D E   LGLVP+VVE + RGERSYDIYSRLLKERIVF+ G++ D  A L+ AQLLF
Sbjct: 14  HAPQDFETKALGLVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLF 73

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           LE+ENP K+ISLYINSPGG V+AG+AIYDTMQFIKP +ST CMG AASMG+ LLS+G KG
Sbjct: 74  LESENPDKDISLYINSPGGSVSAGLAIYDTMQFIKPDVSTLCMGLAASMGAFLLSSGAKG 133

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
            R+ALPNAR+++HQP GG  GQASDIE  A++I+ ++ RLN+I  +N G+  E + +  D
Sbjct: 134 KRYALPNARVMIHQPLGGARGQASDIEIQAREILYLRERLNKILAENTGQDVERIARDTD 193

Query: 186 RDHIMSASEACDWGVVDKVLMSRI 209
           RD+ MS+ +A  +G++D V   R 
Sbjct: 194 RDNFMSSDDAKAYGLIDHVSAKRP 217


>gi|17546430|ref|NP_519832.1| ATP-dependent Clp protease proteolytic subunit [Ralstonia
           solanacearum GMI1000]
 gi|83745913|ref|ZP_00942970.1| ATP-dependent Clp protease proteolytic subunit [Ralstonia
           solanacearum UW551]
 gi|207724193|ref|YP_002254591.1| atp-atp-dependent clp protease proteolytic subunit (endopeptidase
           clp) protein [Ralstonia solanacearum MolK2]
 gi|207743049|ref|YP_002259441.1| atp-atp-dependent clp protease proteolytic subunit (endopeptidase
           clp) protein [Ralstonia solanacearum IPO1609]
 gi|300691404|ref|YP_003752399.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
           [Ralstonia solanacearum PSI07]
 gi|300703972|ref|YP_003745574.1| proteolytic subunit of clpa-clpp ATP-dependent serine protease
           [Ralstonia solanacearum CFBP2957]
 gi|22653696|sp|Q8XYP7|CLPP_RALSO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|17428728|emb|CAD15413.1| probable atp-atp-dependent clp protease proteolytic subunit
           (endopeptidase clp). transmembrane protein [Ralstonia
           solanacearum GMI1000]
 gi|83727603|gb|EAP74724.1| ATP-dependent Clp protease proteolytic subunit [Ralstonia
           solanacearum UW551]
 gi|206589403|emb|CAQ36365.1| atp-atp-dependent clp protease proteolytic subunit (endopeptidase
           clp) protein [Ralstonia solanacearum MolK2]
 gi|206594446|emb|CAQ61373.1| atp-atp-dependent clp protease proteolytic subunit (endopeptidase
           clp) protein [Ralstonia solanacearum IPO1609]
 gi|299066731|emb|CBJ37925.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
           [Ralstonia solanacearum CMR15]
 gi|299071635|emb|CBJ42959.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
           [Ralstonia solanacearum CFBP2957]
 gi|299078464|emb|CBJ51116.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
           [Ralstonia solanacearum PSI07]
          Length = 217

 Score =  287 bits (734), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 118/197 (59%), Positives = 156/197 (79%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E   LGLVPMVVEQ+ RGER+YDIYSRLLKER++F+ G++ D  A L+ AQLLFLE+ENP
Sbjct: 19  ETQGLGLVPMVVEQSGRGERAYDIYSRLLKERVIFMVGEVNDQTANLVVAQLLFLESENP 78

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+ISLYINSPGG V+AG+A+YDTMQF+KP +ST CMG AASMG+ LL+AG KG R+ALP
Sbjct: 79  DKDISLYINSPGGSVSAGLAMYDTMQFVKPDVSTLCMGMAASMGAFLLAAGAKGKRYALP 138

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+RI++HQP GG  GQASDIE  A++I+ ++ RLN I  +  G+  +++ +  DRD+ MS
Sbjct: 139 NSRIMIHQPLGGARGQASDIEIQAREILYLRERLNTILSEVTGQPVDKIARDTDRDNFMS 198

Query: 192 ASEACDWGVVDKVLMSR 208
             +A ++G++DKVL  R
Sbjct: 199 GDQAKEYGLIDKVLARR 215


>gi|117620419|ref|YP_856542.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117561826|gb|ABK38774.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 200

 Score =  287 bits (734), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 127/199 (63%), Positives = 157/199 (78%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
            +E     L+PMVVEQT +GERSYDIYSRLLKER++F+TGQ+EDHMA L+ AQLLFLE+E
Sbjct: 1   MTESPRNALIPMVVEQTAKGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESE 60

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP ++IS+YINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+ G KG RF 
Sbjct: 61  NPDQDISIYINSPGGAVTAGMSIYDTMQFIKPDVSTVCMGQACSMGAFLLAGGAKGKRFC 120

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPNAR+++HQP GGF GQASDI+ HAQ+I+KIK  LNE    + G+    +E+  DRD+ 
Sbjct: 121 LPNARVMIHQPLGGFQGQASDIQIHAQEILKIKNTLNERLAFHTGQDMATIERDTDRDNF 180

Query: 190 MSASEACDWGVVDKVLMSR 208
           MSA +A  +G+VD VL  R
Sbjct: 181 MSAEQAVAYGLVDGVLSRR 199


>gi|150396095|ref|YP_001326562.1| ATP-dependent Clp protease proteolytic subunit [Sinorhizobium
           medicae WSM419]
 gi|150027610|gb|ABR59727.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sinorhizobium
           medicae WSM419]
          Length = 208

 Score =  287 bits (734), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 159/204 (77%), Positives = 186/204 (91%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           ++  D  + LVPMVVEQTNRGERSYDIYSRLLKERI+F+TG +EDHMATL+CAQLLFLEA
Sbjct: 2   RNPVDTAMALVPMVVEQTNRGERSYDIYSRLLKERIIFLTGPVEDHMATLVCAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI+LYINSPGGVVTAGMAIYDTMQFIKP +ST C+GQAASMGSLLL+AG K MRF
Sbjct: 62  ENPKKEIALYINSPGGVVTAGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLAAGHKDMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           A PN+RI++HQPSGGF GQASDIERHA+DI+K+KRRLNE+YVK+CG+TYEEVE+TLDRDH
Sbjct: 122 ATPNSRIMVHQPSGGFQGQASDIERHARDILKMKRRLNEVYVKHCGRTYEEVEQTLDRDH 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIE 212
            MS+ EA DWG++DKV+ SR  +E
Sbjct: 182 FMSSDEALDWGLIDKVITSRDAVE 205


>gi|86610014|ref|YP_478776.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. JA-2-3B'a(2-13)]
 gi|115311349|sp|Q2JIP1|CLPP2_SYNJB RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|86558556|gb|ABD03513.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. JA-2-3B'a(2-13)]
          Length = 200

 Score =  287 bits (734), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 102/192 (53%), Positives = 147/192 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+EQ+ RGER++DIYSRLL++RI+F+  Q++D +A LI AQ+L+LE+E+P+K+I L
Sbjct: 1   MIPTVIEQSARGERAFDIYSRLLRDRIIFLGTQVDDDIANLIVAQMLYLESEDPEKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AGMAIYDTMQ I+P +ST C+G AASMG+ LL+ G KG R ALP+ARI++
Sbjct: 61  YINSPGGSVYAGMAIYDTMQHIQPDVSTICIGLAASMGAFLLAGGTKGKRIALPHARIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  G A+DIE  A++I+ IK  LN +   + G+  E +E+  DRD+ M+  +A +
Sbjct: 121 HQPLGGAQGPATDIEIQAKEILFIKNSLNSLLAYHTGQPLERIERDTDRDNFMTPEQAKE 180

Query: 198 WGVVDKVLMSRI 209
           +G++D+V+  R 
Sbjct: 181 YGLIDQVISKRP 192


>gi|86605879|ref|YP_474642.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. JA-3-3Ab]
 gi|115311348|sp|Q2JV68|CLPP2_SYNJA RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|86554421|gb|ABC99379.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. JA-3-3Ab]
          Length = 200

 Score =  287 bits (734), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 102/192 (53%), Positives = 147/192 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+EQ+ RGER++DIYSRLL++RI+F+  Q++D +A LI AQ+L+LE+E+P+K+I L
Sbjct: 1   MIPTVIEQSARGERAFDIYSRLLRDRIIFLGTQVDDDIANLIVAQMLYLESEDPEKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AGMAIYDTMQ I+P +ST C+G AASMG+ LL+ G KG R ALP+ARI++
Sbjct: 61  YINSPGGSVYAGMAIYDTMQHIQPDVSTICIGLAASMGAFLLAGGAKGKRIALPHARIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  G A+DIE  A++I+ IK  LN +   + G+  E +E+  DRD+ M+  +A +
Sbjct: 121 HQPLGGAQGPATDIEIQAKEILFIKNSLNSLLAYHTGQPLERIERDTDRDNFMTPEQAKE 180

Query: 198 WGVVDKVLMSRI 209
           +G++D+V+  R 
Sbjct: 181 YGLIDQVITRRP 192


>gi|254670503|emb|CBA06249.1| ATP-dependent Clp protease, proteolytic subunit [Neisseria
           meningitidis alpha153]
          Length = 209

 Score =  286 bits (733), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 123/197 (62%), Positives = 159/197 (80%), Gaps = 2/197 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ+ RGER++DIYSRLLKERIVF+ G + D  A L+ AQLLFLE+ENP K+I  
Sbjct: 12  LVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFF 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM+IYDTM FIKP +ST C+GQAASMG+ LLSAGEKG RFALPN+RI++
Sbjct: 72  YINSPGGSVTAGMSIYDTMNFIKPDVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMI 131

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASDIE HA++++KIK +LN +  K+CG+   ++E+  DRD+ MSA EA
Sbjct: 132 HQPLISGGLGGQASDIEIHARELLKIKEKLNRLMAKHCGRDLADLERDTDRDNFMSAEEA 191

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G++D+VL +R  ++
Sbjct: 192 KEYGLIDQVLENRASLQ 208


>gi|93278470|pdb|1YG8|A Chain A, The Structure Of A V6a Variant Of Clpp.
 gi|93278471|pdb|1YG8|B Chain B, The Structure Of A V6a Variant Of Clpp.
 gi|93278472|pdb|1YG8|C Chain C, The Structure Of A V6a Variant Of Clpp.
 gi|93278473|pdb|1YG8|D Chain D, The Structure Of A V6a Variant Of Clpp.
 gi|93278474|pdb|1YG8|E Chain E, The Structure Of A V6a Variant Of Clpp.
 gi|93278475|pdb|1YG8|F Chain F, The Structure Of A V6a Variant Of Clpp.
 gi|93278476|pdb|1YG8|G Chain G, The Structure Of A V6a Variant Of Clpp.
 gi|93278477|pdb|1YG8|H Chain H, The Structure Of A V6a Variant Of Clpp.
 gi|93278478|pdb|1YG8|I Chain I, The Structure Of A V6a Variant Of Clpp.
 gi|93278479|pdb|1YG8|J Chain J, The Structure Of A V6a Variant Of Clpp.
 gi|93278480|pdb|1YG8|K Chain K, The Structure Of A V6a Variant Of Clpp.
 gi|93278481|pdb|1YG8|L Chain L, The Structure Of A V6a Variant Of Clpp.
 gi|93278482|pdb|1YG8|M Chain M, The Structure Of A V6a Variant Of Clpp.
 gi|93278483|pdb|1YG8|N Chain N, The Structure Of A V6a Variant Of Clpp.
 gi|93278484|pdb|1YG8|O Chain O, The Structure Of A V6a Variant Of Clpp.
 gi|93278485|pdb|1YG8|P Chain P, The Structure Of A V6a Variant Of Clpp.
 gi|93278486|pdb|1YG8|Q Chain Q, The Structure Of A V6a Variant Of Clpp.
 gi|93278487|pdb|1YG8|R Chain R, The Structure Of A V6a Variant Of Clpp.
 gi|93278488|pdb|1YG8|S Chain S, The Structure Of A V6a Variant Of Clpp.
 gi|93278489|pdb|1YG8|T Chain T, The Structure Of A V6a Variant Of Clpp.
 gi|93278490|pdb|1YG8|U Chain U, The Structure Of A V6a Variant Of Clpp.
 gi|93278491|pdb|1YG8|V Chain V, The Structure Of A V6a Variant Of Clpp.
 gi|93278492|pdb|1YG8|W Chain W, The Structure Of A V6a Variant Of Clpp.
 gi|93278493|pdb|1YG8|X Chain X, The Structure Of A V6a Variant Of Clpp.
 gi|93278494|pdb|1YG8|Y Chain Y, The Structure Of A V6a Variant Of Clpp.
 gi|93278495|pdb|1YG8|Z Chain Z, The Structure Of A V6a Variant Of Clpp.
 gi|93278496|pdb|1YG8|AA Chain a, The Structure Of A V6a Variant Of Clpp.
 gi|93278497|pdb|1YG8|BB Chain b, The Structure Of A V6a Variant Of Clpp
          Length = 193

 Score =  286 bits (733), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 124/192 (64%), Positives = 163/192 (84%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            L PMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI AQ+LFLEAENP+K+I 
Sbjct: 1   ALAPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIY 60

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+AG KG RF LPN+R++
Sbjct: 61  LYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVM 120

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG+ GQA+DIE HA++I+K+K R+NE+   + G++ E++E+  +RD  +SA EA 
Sbjct: 121 IHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAV 180

Query: 197 DWGVVDKVLMSR 208
           ++G+VD +L  R
Sbjct: 181 EYGLVDSILTHR 192


>gi|314933077|ref|ZP_07840443.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus caprae C87]
 gi|313654396|gb|EFS18152.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus caprae C87]
          Length = 195

 Score =  286 bits (733), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 104/191 (54%), Positives = 148/191 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+E TNRGER+YDIYSRLLK+RI+ +  QI+D++A  I +QLLFL+A++ +K+I
Sbjct: 1   MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG AIYDT+Q IKP + T C+G AASMGS LL+AG KG RFALPNA +
Sbjct: 61  YLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A  I+K + +LN I  +  G++ E++++  DRD+ ++A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAANHILKTREKLNRILAERTGQSIEKIQQDTDRDNFLTAEEA 180

Query: 196 CDWGVVDKVLM 206
            ++G++D+V+ 
Sbjct: 181 KEYGLIDEVME 191


>gi|254468869|ref|ZP_05082275.1| ATP-dependent Clp protease, proteolytic subunit ClpP [beta
           proteobacterium KB13]
 gi|207087679|gb|EDZ64962.1| ATP-dependent Clp protease, proteolytic subunit ClpP [beta
           proteobacterium KB13]
          Length = 207

 Score =  286 bits (733), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 125/201 (62%), Positives = 158/201 (78%)

Query: 8   KKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
            + +  V LG +PMVVEQ+ RGERSYDIYSRLLKER+VF+ G ++D  A L+ AQLLFLE
Sbjct: 7   SRSNTPVGLGYIPMVVEQSGRGERSYDIYSRLLKERVVFLVGPVDDMTANLVVAQLLFLE 66

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AENP K+ISLYINSPGG VTAGMAIYDTMQFIKP +ST C+GQAASMG+LLL+AG K  R
Sbjct: 67  AENPDKDISLYINSPGGSVTAGMAIYDTMQFIKPDVSTLCIGQAASMGALLLTAGAKDKR 126

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           F LPN+R+++HQP GGF GQASDIE HA++I+ +K +LN I   + G+  + + K  DRD
Sbjct: 127 FCLPNSRVMIHQPLGGFQGQASDIEIHAKEILYLKDKLNRILSHHTGQDIKTISKDTDRD 186

Query: 188 HIMSASEACDWGVVDKVLMSR 208
           + MS+ +A  +G+VDKV+  R
Sbjct: 187 NFMSSEDAVKYGLVDKVINER 207


>gi|262277075|ref|ZP_06054868.1| ATP-dependent Clp protease, proteolytic subunit ClpP [alpha
           proteobacterium HIMB114]
 gi|262224178|gb|EEY74637.1| ATP-dependent Clp protease, proteolytic subunit ClpP [alpha
           proteobacterium HIMB114]
          Length = 204

 Score =  286 bits (733), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 131/203 (64%), Positives = 168/203 (82%), Gaps = 1/203 (0%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           KD  D+++  LVPMV+EQT RGERS+DIYSRLLKERI+F+TG I  ++++L+ AQLLFLE
Sbjct: 2   KDPFDIYMNTLVPMVIEQTPRGERSFDIYSRLLKERIIFLTGPINSYISSLVSAQLLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           +EN  KEI LYINSPGGVVT G+AIYDTMQFIKP +ST C+GQAASMGS LL+AGEKG+R
Sbjct: 62  SENNSKEIYLYINSPGGVVTDGLAIYDTMQFIKPTVSTLCIGQAASMGSFLLAAGEKGLR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
            +LPNARI++HQPS GF GQA+DIE H ++I+  K+RLNEIY K+ G+T E +++ L+RD
Sbjct: 122 MSLPNARIMVHQPSAGFQGQATDIEIHTKEILSTKKRLNEIYSKHTGQTVETIKEALERD 181

Query: 188 HIMSASEACDWGVVDKVLMSRID 210
           + MSA EA  +G+VDKV+  R +
Sbjct: 182 NFMSAEEAKKFGLVDKVVEKRDN 204


>gi|255102472|ref|ZP_05331449.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile QCD-63q42]
          Length = 194

 Score =  286 bits (733), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 117/194 (60%), Positives = 152/194 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQT RGERSYDI+SRLLK+RI+F+  Q+ D  A LI AQLLFLEAE+P K+I
Sbjct: 1   MALVPVVVEQTGRGERSYDIFSRLLKDRIIFLGDQVNDATAGLIVAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +T+GMAIYDTMQ+IKP +ST C+G AASMG+ LL+AG KG R ALPN+ I
Sbjct: 61  HLYINSPGGSITSGMAIYDTMQYIKPDVSTICIGMAASMGAFLLAAGAKGKRLALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DIE HA+ I+KIK  LNEI+ +  G+  E+++   +RD+ MSA EA
Sbjct: 121 MIHQPLGGAQGQATDIEIHAKRILKIKETLNEIFSERTGQPLEKIKMDTERDNFMSALEA 180

Query: 196 CDWGVVDKVLMSRI 209
            ++G++D+V   R 
Sbjct: 181 KEYGLIDEVFTKRP 194


>gi|311107153|ref|YP_003980006.1| ATP-dependent Clp protease proteolytic subunit ClpP [Achromobacter
           xylosoxidans A8]
 gi|310761842|gb|ADP17291.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Achromobacter
           xylosoxidans A8]
          Length = 217

 Score =  286 bits (733), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 117/195 (60%), Positives = 154/195 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG +PMV+EQ+ RGER+YDIYSRLL+ER++F+ G + D  A L+ AQLLFLE+ENP K+I
Sbjct: 22  LGYIPMVIEQSGRGERAYDIYSRLLRERLIFLVGPVNDATANLVVAQLLFLESENPDKDI 81

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG V AGMAI+DTMQF+KP +ST C G AASMG+ LL+AG+KG RF LPN+RI
Sbjct: 82  SLYINSPGGSVYAGMAIFDTMQFVKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRI 141

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQASDI+  A++I+ ++ RLN I  +N G+T E +    +RD+ MSA +A
Sbjct: 142 MIHQPSGGAQGQASDIQIQAREILDLRERLNRILAENTGQTMERIGIDTERDNFMSAEDA 201

Query: 196 CDWGVVDKVLMSRID 210
             +G+VDKV+ SR +
Sbjct: 202 VSYGLVDKVMTSRSE 216


>gi|186475312|ref|YP_001856782.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           phymatum STM815]
 gi|184191771|gb|ACC69736.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           phymatum STM815]
          Length = 217

 Score =  286 bits (733), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 114/202 (56%), Positives = 152/202 (75%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
             +    LVP V+EQ+ RGER+YDIYSRLL+ERIVF+ G + D  A+LI AQLLFLE+EN
Sbjct: 8   PANTGFNLVPTVIEQSGRGERAYDIYSRLLRERIVFLVGPVNDQSASLIVAQLLFLESEN 67

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
           P K+IS YINSPGG V  G+AI+DTMQFIKP +ST C G AASMG+ LL+AG  G R+AL
Sbjct: 68  PDKDISFYINSPGGSVYDGLAIFDTMQFIKPDVSTLCTGFAASMGTFLLAAGAPGKRYAL 127

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           PNARI++HQPSGG  G ASD+E HA++++ ++ RLN++  +  G++  ++EK  DRD+ M
Sbjct: 128 PNARIMIHQPSGGGQGTASDVEIHAKEVLYLRERLNDVLAQRTGQSIAQIEKDTDRDNFM 187

Query: 191 SASEACDWGVVDKVLMSRIDIE 212
           SA  A  +G+VD VL +R+ + 
Sbjct: 188 SAEAAKTYGLVDDVLTTRVPLP 209


>gi|325144548|gb|EGC66847.1| endopeptidase Clp [Neisseria meningitidis M01-240013]
          Length = 204

 Score =  286 bits (733), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 122/196 (62%), Positives = 158/196 (80%), Gaps = 2/196 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ+ RGER++DIYSRLLKERIVF+ G + D  A L+ AQLLFLE+ENP K+I  
Sbjct: 7   LVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFF 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM+IYDTM FIKP +ST C+GQAASMG+ LLSAGEKG RFALPN+RI++
Sbjct: 67  YINSPGGSVTAGMSIYDTMNFIKPDVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMI 126

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASDIE HA++++KIK +LN +  K+CG+   ++E+  DRD+ MSA EA
Sbjct: 127 HQPLISGGLGGQASDIEIHARELLKIKEKLNRLMAKHCGRDLADLERDTDRDNFMSAEEA 186

Query: 196 CDWGVVDKVLMSRIDI 211
            ++G++D++L +R  +
Sbjct: 187 KEYGLIDQILENRASL 202


>gi|302390303|ref|YP_003826124.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Thermosediminibacter oceani DSM 16646]
 gi|302200931|gb|ADL08501.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Thermosediminibacter oceani DSM 16646]
          Length = 200

 Score =  286 bits (733), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 116/199 (58%), Positives = 157/199 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+V+EQTNRGER+YDIYSRLLK+RIVF+   I+D +A+L+ AQLLFLE+E+P K+I
Sbjct: 1   MSLVPIVIEQTNRGERAYDIYSRLLKDRIVFIGTPIDDSIASLVIAQLLFLESEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG+AIYDTMQ+IKP +ST C+G AASMG++LL+ G  G R ALPN+RI
Sbjct: 61  YLYINSPGGSVTAGLAIYDTMQYIKPDVSTICIGMAASMGAVLLAGGAPGKRLALPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  G+A DIE HA++I++++  LNEI VK+  +  E +E+  +RD+ MSA EA
Sbjct: 121 MIHQPWGGVQGRALDIETHAKEILRLREVLNEILVKHTKQPLERIERDTERDYFMSAVEA 180

Query: 196 CDWGVVDKVLMSRIDIEEK 214
             +G++D+V+  R    EK
Sbjct: 181 KQYGLIDEVIYKRTKAGEK 199


>gi|113867496|ref|YP_725985.1| ATP-dependent Clp protease proteolytic subunit [Ralstonia eutropha
           H16]
 gi|194289504|ref|YP_002005411.1| ATP-dependent clp protease proteolytic subunit [Cupriavidus
           taiwanensis LMG 19424]
 gi|123033071|sp|Q0KBK4|CLPP_RALEH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706449|sp|B3R4W1|CLPP_CUPTR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|113526272|emb|CAJ92617.1| Endopeptidase Clp (type 1) [Ralstonia eutropha H16]
 gi|193223339|emb|CAQ69344.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
           [Cupriavidus taiwanensis LMG 19424]
          Length = 216

 Score =  286 bits (733), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 122/197 (61%), Positives = 155/197 (78%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E   LGLVPMVVEQ+ RGER+YDIYSRLLKER+VF+ G++ D  A L+ AQLLFLE+ENP
Sbjct: 19  ETQGLGLVPMVVEQSGRGERAYDIYSRLLKERVVFMVGEVNDQTANLVVAQLLFLESENP 78

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K++SLYINSPGG V+AG+AIYDTMQFIKP +ST CMG AASMG+ LL+AG KG R ALP
Sbjct: 79  DKDVSLYINSPGGSVSAGLAIYDTMQFIKPDVSTLCMGMAASMGAFLLAAGAKGKRSALP 138

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+RI++HQP GG  GQASDIE  A++I+ ++ RLN I  +  G+  E++ +  DRD+ MS
Sbjct: 139 NSRIMIHQPLGGARGQASDIEIQAREILYLRERLNTILSEVTGQPVEKIARDTDRDNFMS 198

Query: 192 ASEACDWGVVDKVLMSR 208
             +A D+G++DKVL  R
Sbjct: 199 GDQAVDYGLIDKVLARR 215


>gi|224824981|ref|ZP_03698087.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lutiella
           nitroferrum 2002]
 gi|224602652|gb|EEG08829.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lutiella
           nitroferrum 2002]
          Length = 207

 Score =  286 bits (733), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 126/203 (62%), Positives = 161/203 (79%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
             +   LGLVPMVVEQ+ RGER+YDIYSRLLKERIVF+ G + D  A L+ AQ+LFLE+E
Sbjct: 4   MMDTQALGLVPMVVEQSGRGERAYDIYSRLLKERIVFLVGPVTDESANLVVAQMLFLESE 63

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP K+I  YINSPGG V+AGM+I+DTM FIKP +ST C+GQAASMG+ LLSAG KG RFA
Sbjct: 64  NPDKDIYFYINSPGGSVSAGMSIFDTMNFIKPDVSTLCIGQAASMGAFLLSAGAKGKRFA 123

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPN+RI++HQP GGF GQASD E HA++I+ +KRRLNE+   + G++ EE+E+  DRD+ 
Sbjct: 124 LPNSRIMIHQPLGGFQGQASDFEIHAKNILYMKRRLNELLALHTGRSIEEIERDTDRDNF 183

Query: 190 MSASEACDWGVVDKVLMSRIDIE 212
           MS+ EA  +G++DK+L SR D +
Sbjct: 184 MSSEEALAYGLIDKMLQSRRDAQ 206


>gi|330817271|ref|YP_004360976.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           gladioli BSR3]
 gi|327369664|gb|AEA61020.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
           gladioli BSR3]
          Length = 217

 Score =  286 bits (733), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 123/204 (60%), Positives = 156/204 (76%)

Query: 6   CAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF 65
            A +D E   LGLVP+VVE + RGERSYDIYSRLLKERIVF+ G++ D  A L+ AQLLF
Sbjct: 14  HAPQDFETKALGLVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLF 73

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           LE+ENP K+ISLYINSPGG V+AG+AIYDTMQFIKP +ST CMG AASMG+ LLS+G KG
Sbjct: 74  LESENPDKDISLYINSPGGSVSAGLAIYDTMQFIKPDVSTLCMGLAASMGAFLLSSGAKG 133

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
            R+ALPNAR+++HQP GG  GQASDIE  A++I+ ++ RLN+I   N G+  E + +  D
Sbjct: 134 KRYALPNARVMIHQPLGGARGQASDIEIQAREILYLRERLNKILADNTGQDVERIARDTD 193

Query: 186 RDHIMSASEACDWGVVDKVLMSRI 209
           RD+ MS+ +A  +G++D V   R 
Sbjct: 194 RDNFMSSDDAKAYGLIDHVTAKRP 217


>gi|300311895|ref|YP_003775987.1| ATP-dependent Clp protease proteolytic subunit [Herbaspirillum
           seropedicae SmR1]
 gi|124483356|emb|CAM32551.1| ATP-dependent Clp protease (proteolytic subunit) protein
           [Herbaspirillum seropedicae]
 gi|300074680|gb|ADJ64079.1| ATP-dependent Clp protease (proteolytic subunit) protein
           [Herbaspirillum seropedicae SmR1]
          Length = 208

 Score =  286 bits (733), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 123/197 (62%), Positives = 156/197 (79%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           +   LG+VPMV+EQ+ RGER+YDIYSRLLKERI+F+ G + D MA LI AQLLFLE+ENP
Sbjct: 11  DTQMLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDAMANLIVAQLLFLESENP 70

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+ISLYINSPGG V+AGMAI+DTMQFIKP +ST C G AASMG+ LL+AG KG RF+LP
Sbjct: 71  DKDISLYINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAAGAKGKRFSLP 130

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+RI++HQP GG  GQASDIE  A++I+ ++ RLN I  +  G+T E++ K  DRD+ MS
Sbjct: 131 NSRIMIHQPLGGAQGQASDIEIQAREILYLRERLNTILAEKTGRTVEQISKDTDRDNFMS 190

Query: 192 ASEACDWGVVDKVLMSR 208
           A  A ++G++DKVL  R
Sbjct: 191 ADAAAEYGLIDKVLTER 207


>gi|295094048|emb|CBK83139.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Coprococcus
           sp. ART55/1]
          Length = 193

 Score =  286 bits (733), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 110/193 (56%), Positives = 149/193 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP VVEQT+RGER+YDIYSRLLK+RI+F+  ++ D  A+L+ AQLLFLE+E+P K+I
Sbjct: 1   MALVPYVVEQTSRGERTYDIYSRLLKDRIIFLGDEVNDATASLVIAQLLFLESEDPSKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG VTAGM IYDTM++IK  +ST C G AASMG+ LL+ G KG R+ALPN+ I
Sbjct: 61  SLYINSPGGSVTAGMGIYDTMRYIKCDVSTICCGMAASMGAFLLAGGTKGKRYALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K K +LN++  +N GK  + +    DRD+ M+A EA
Sbjct: 121 MIHQPLGGTQGQATEIEIAARHILKTKEKLNKMLSENTGKPLDVIAADTDRDNWMTAEEA 180

Query: 196 CDWGVVDKVLMSR 208
           C +G++D V+ +R
Sbjct: 181 CAYGLIDSVITNR 193


>gi|261377747|ref|ZP_05982320.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
           cinerea ATCC 14685]
 gi|269146032|gb|EEZ72450.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
           cinerea ATCC 14685]
          Length = 206

 Score =  286 bits (733), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 122/197 (61%), Positives = 159/197 (80%), Gaps = 2/197 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ+ RGER++DIYSRLLKERIVF+ G + D  A L+ AQLLFLE+ENP K+I  
Sbjct: 9   LVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFF 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM+IYDTM FIKP +ST C+GQAASMG+ LLSAGEKG RFALPN+RI++
Sbjct: 69  YINSPGGSVTAGMSIYDTMNFIKPNVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMI 128

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASDIE HA++++KIK +LN +  K+CG+   ++E+  DRD+ MSA EA
Sbjct: 129 HQPLISGGLGGQASDIEIHARELLKIKEKLNHLMAKHCGRDLADLERDTDRDNFMSAEEA 188

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G++D++L +R  ++
Sbjct: 189 KEYGLIDQILENRASLQ 205


>gi|194098886|ref|YP_002001950.1| ATP-dependent Clp protease proteolytic subunit [Neisseria
           gonorrhoeae NCCP11945]
 gi|193934176|gb|ACF30000.1| putative endopeptidase [Neisseria gonorrhoeae NCCP11945]
 gi|317164458|gb|ADV07999.1| ATP-dependent Clp protease proteolytic subunit [Neisseria
           gonorrhoeae TCDC-NG08107]
          Length = 209

 Score =  286 bits (733), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 123/196 (62%), Positives = 158/196 (80%), Gaps = 2/196 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ+ RGER++DIYSRLLKERIVF+ G + D  A L+ AQLLFLE+ENP K+I  
Sbjct: 12  LVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFF 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM+IYDTM FIKP +ST C+GQAASMG+ LLSAGEKG RFALPN+RI++
Sbjct: 72  YINSPGGSVTAGMSIYDTMNFIKPDVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMI 131

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASDIE HA++++KIK +LN +  K+CG+   ++E+  DRD+ MSA EA
Sbjct: 132 HQPLISGGLGGQASDIEIHARELLKIKEKLNRLMAKHCGRDLADLERDTDRDNFMSAEEA 191

Query: 196 CDWGVVDKVLMSRIDI 211
            ++G++D+VL +R  +
Sbjct: 192 KEYGLIDQVLENRASL 207


>gi|238923369|ref|YP_002936885.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Eubacterium
           rectale ATCC 33656]
 gi|259585954|sp|C4ZGF4|CLPP_EUBR3 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|238875044|gb|ACR74751.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Eubacterium
           rectale ATCC 33656]
 gi|291525457|emb|CBK91044.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Eubacterium
           rectale DSM 17629]
 gi|291528435|emb|CBK94021.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Eubacterium
           rectale M104/1]
          Length = 193

 Score =  286 bits (733), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 113/193 (58%), Positives = 154/193 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGER+YDIYSRLLK+RI+F+  ++ +  A+L+ AQLLFLE+E+P K+I
Sbjct: 1   MSLVPYVIEQTSRGERNYDIYSRLLKDRIIFLGEEVNETTASLVVAQLLFLESEDPNKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG+VTAG+AIYDTMQ+IK  +ST C+G AASMG+ LL+ G KG R+ALPNA I
Sbjct: 61  HLYINSPGGMVTAGLAIYDTMQYIKCDVSTICIGLAASMGAFLLAGGAKGKRYALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I+  A++I+K K+RLNEI   N GK YE +    +RD+ MSA EA
Sbjct: 121 MIHQPSGGAKGQATEIQIAAENILKTKKRLNEILAANTGKPYETIAADTERDNYMSAQEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++D V+ +R
Sbjct: 181 AEYGLIDSVITNR 193


>gi|294340353|emb|CAZ88734.1| ATP-dependent Clp protease proteolytic subunit precursor
           (Endopeptidase Clp) (Caseinolytic protease) (Protease
           Ti) (Heat shock protein F21.5) [Thiomonas sp. 3As]
          Length = 202

 Score =  286 bits (733), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 118/193 (61%), Positives = 155/193 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LGLVPMV+EQ+ RGER+YDIYSRLL+ER++F+ G I D MA L+ AQLLFLE+ENP K+I
Sbjct: 9   LGLVPMVIEQSGRGERAYDIYSRLLRERVIFLVGPINDQMANLVVAQLLFLESENPDKDI 68

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG V+AGMAI+DTMQFIKP +ST C G AASMG+ L++AG KG R++LPN+RI
Sbjct: 69  SLYINSPGGSVSAGMAIFDTMQFIKPDVSTLCTGIAASMGAFLMAAGAKGKRYSLPNSRI 128

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+DIE  A++I+ ++ RLN I  +  G+T E++    +RD  MSA EA
Sbjct: 129 MIHQPSGGAQGQATDIEIQAREILYLRERLNGILAERTGQTLEKIGIDTERDFFMSADEA 188

Query: 196 CDWGVVDKVLMSR 208
            D+G++D+V+  R
Sbjct: 189 KDYGLIDEVISKR 201


>gi|116793577|gb|ABK26796.1| unknown [Picea sitchensis]
          Length = 248

 Score =  286 bits (733), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 120/205 (58%), Positives = 162/205 (79%)

Query: 5   GCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLL 64
               + +     GL+PMV+E T+RGER+YDI+SRLLKERI+ + G I D  A+++ AQLL
Sbjct: 24  PSMNQFNPRRSYGLIPMVIEHTSRGERAYDIFSRLLKERIICINGPIADETASVVVAQLL 83

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           FLE+ENPQK I++YINSPGGVVTAG+AIYDTMQ+IK P++T C+GQAASMGSLLL+AG  
Sbjct: 84  FLESENPQKPINMYINSPGGVVTAGLAIYDTMQYIKSPVTTLCIGQAASMGSLLLAAGSH 143

Query: 125 GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
           G R ALPNAR+++HQPSGG SGQASDI  HA++I+K + RLN +Y K+ G+T E++E+ +
Sbjct: 144 GERRALPNARVMIHQPSGGASGQASDIAIHAKEILKTRERLNGLYAKHTGQTIEKIEQFM 203

Query: 185 DRDHIMSASEACDWGVVDKVLMSRI 209
           +RD  MS  EA ++G++D+V+  R 
Sbjct: 204 ERDTFMSPDEAKEFGLIDEVIEHRP 228


>gi|134300401|ref|YP_001113897.1| ATP-dependent Clp protease proteolytic subunit [Desulfotomaculum
           reducens MI-1]
 gi|172044337|sp|A4J7L9|CLPP_DESRM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|134053101|gb|ABO51072.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Desulfotomaculum reducens MI-1]
          Length = 195

 Score =  286 bits (732), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 118/195 (60%), Positives = 157/195 (80%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
             GLVP+VVEQTNRGER+YDIYSRLLK+RI+F+ G I+DH+A L+ AQ LFLEAE+P+K+
Sbjct: 1   MSGLVPIVVEQTNRGERAYDIYSRLLKDRIIFIGGPIDDHIANLVIAQFLFLEAEDPEKD 60

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I LYINSPGGVVTAG+AIYDTMQ+IKP +ST C+GQAASMGS LL+AG  G R+ALP AR
Sbjct: 61  IHLYINSPGGVVTAGLAIYDTMQYIKPAVSTICLGQAASMGSFLLAAGAPGKRYALPMAR 120

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQP GG  GQA+DI+ HA++I+++K  LN+    + G+  E++ +  +RD+ MSA E
Sbjct: 121 IMIHQPLGGVQGQATDIDIHAKEILRMKDLLNDRLAHHTGQPLEQITRDTERDYFMSAEE 180

Query: 195 ACDWGVVDKVLMSRI 209
           A  +G++D+V+  R 
Sbjct: 181 AKKYGLIDEVMPYRK 195


>gi|94958239|gb|ABF47251.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           xylosus]
          Length = 194

 Score =  286 bits (732), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 108/190 (56%), Positives = 149/190 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+E TNRGER+YDIYSRLLK+RI+ +  QI+D++A  I +QLLFL+A++ +K+I
Sbjct: 1   MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDAEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG AIYDT+Q IKP + T C+G AASMGS LL+AG KG RFALPNA +
Sbjct: 61  YLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A  I+K + +LN+I  +  G++ E++EK  DRD+ +SA EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAANHILKTRAKLNQILAERTGQSIEKIEKDTDRDNFLSAEEA 180

Query: 196 CDWGVVDKVL 205
            ++G+VD+V+
Sbjct: 181 KEYGLVDQVM 190


>gi|223043057|ref|ZP_03613105.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus capitis SK14]
 gi|222443911|gb|EEE50008.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus capitis SK14]
          Length = 195

 Score =  286 bits (732), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 104/195 (53%), Positives = 148/195 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+E TNRGER+YDIYSRLLK+RI+ +  QI+D++A  I +QLLFL+A++ +K+I
Sbjct: 1   MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG AIYDT+Q IKP + T C+G AASMGS LL+AG KG RFALPNA +
Sbjct: 61  YLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A  I+K + +LN I  +  G++ E++++  DRD+ ++A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAANHILKTREKLNRILAERTGQSIEKIQQDTDRDNFLTAEEA 180

Query: 196 CDWGVVDKVLMSRID 210
            ++G++D+V+     
Sbjct: 181 KEYGLIDEVMEPESK 195


>gi|197302444|ref|ZP_03167499.1| hypothetical protein RUMLAC_01172 [Ruminococcus lactaris ATCC
           29176]
 gi|197298342|gb|EDY32887.1| hypothetical protein RUMLAC_01172 [Ruminococcus lactaris ATCC
           29176]
          Length = 193

 Score =  286 bits (732), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 113/192 (58%), Positives = 150/192 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLLKERI+F+  ++ D  A++I AQLLFLEA++P K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLKERIIFLGEEVNDVSASVIVAQLLFLEADDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMAIYDTMQ+IK  +ST C+G AASMG+ LLS G KG RFALPNA I
Sbjct: 61  QLYINSPGGSVTAGMAIYDTMQYIKCDVSTVCIGMAASMGAFLLSGGAKGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++I+  A+ I++ ++ LN I   N GK  E ++   +RD+ MSA+EA
Sbjct: 121 MIHQPLGGAQGQATEIQIAAEHILRTRKTLNSILAANTGKPLEVIQTDTERDNFMSAAEA 180

Query: 196 CDWGVVDKVLMS 207
            ++G++D+V+ S
Sbjct: 181 KEYGLIDEVIAS 192


>gi|322418659|ref|YP_004197882.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacter sp.
           M18]
 gi|320125046|gb|ADW12606.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacter sp.
           M18]
          Length = 199

 Score =  286 bits (732), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 117/192 (60%), Positives = 158/192 (82%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+VVEQT RGERSYDIYSRLLK+RI+F+ G I+D++A L+ AQLLFLEAE+P K+I L
Sbjct: 2   LVPIVVEQTGRGERSYDIYSRLLKDRIIFLGGGIDDNVANLVIAQLLFLEAEDPDKDIHL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVTAGMAIYDTM++IK P+ST C+GQAASMG+ LLS GEKG RF+L N+RI++
Sbjct: 62  YINSPGGVVTAGMAIYDTMRYIKAPVSTICIGQAASMGAFLLSGGEKGKRFSLANSRIMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQA+DI  HA++I+++K +LNE+  ++ G+++E+V    +RD+ MS  EA  
Sbjct: 122 HQPLGGFQGQATDIHIHAKEILRMKDQLNELLAEHTGQSFEKVAADTERDYFMSGEEAKS 181

Query: 198 WGVVDKVLMSRI 209
           +G++D ++   +
Sbjct: 182 YGIIDAIVTRNV 193


>gi|217967475|ref|YP_002352981.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dictyoglomus
           turgidum DSM 6724]
 gi|217336574|gb|ACK42367.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dictyoglomus
           turgidum DSM 6724]
          Length = 194

 Score =  286 bits (732), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 116/193 (60%), Positives = 156/193 (80%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+V+EQT RGER+YDIYSRLLK RIVF+   I D +A LI AQLLFLE+E+P+K+I L
Sbjct: 2   LVPIVIEQTPRGERAYDIYSRLLKSRIVFLGTTINDEVANLIVAQLLFLESEDPEKDIYL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG+AIYDT++ IKP ++T C+GQAASM ++LL+AG+KG R+ALP++R+++
Sbjct: 62  YINSPGGEVSAGLAIYDTIRHIKPKVATVCVGQAASMAAILLAAGDKGKRYALPHSRVMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  G A+DIE H ++I+KIKR LNEI   + G+  E++EK  DRD  MSA EA +
Sbjct: 122 HQPLGGAYGPAADIEIHTREILKIKRVLNEILAYHTGQPIEKIEKDTDRDFFMSAYEAKE 181

Query: 198 WGVVDKVLMSRID 210
           +G+VD+VL S+ +
Sbjct: 182 YGIVDEVLESKKE 194


>gi|325577258|ref|ZP_08147742.1| ATP-dependent Clp protease, protease subunit [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325160840|gb|EGC72961.1| ATP-dependent Clp protease, protease subunit [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 193

 Score =  286 bits (732), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 124/193 (64%), Positives = 159/193 (82%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++PMVVEQT+RGERSYDIYSRLLKER++F++G++ED MA LI AQLLFLE+E+P+K+I
Sbjct: 1   MSVIPMVVEQTSRGERSYDIYSRLLKERVIFLSGEVEDRMANLIVAQLLFLESEDPKKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           ++YINSPGG VTAGMAIYDTMQFIKP + T C+GQA SMG+ LL+ G  G R ALPNAR+
Sbjct: 61  NIYINSPGGSVTAGMAIYDTMQFIKPDVRTLCIGQACSMGAFLLAGGTAGKRAALPNARV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQASDI+ HAQ+I+KIK+ LNE    + G++ E +EK  DRD+ MSA EA
Sbjct: 121 MIHQPLGGFRGQASDIQIHAQEILKIKQTLNERLAFHTGQSIERIEKDTDRDNFMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD VL+ R
Sbjct: 181 KAYGLVDDVLIKR 193


>gi|238754235|ref|ZP_04615592.1| ATP-dependent Clp protease proteolytic subunit [Yersinia ruckeri
           ATCC 29473]
 gi|238707482|gb|EEP99842.1| ATP-dependent Clp protease proteolytic subunit [Yersinia ruckeri
           ATCC 29473]
          Length = 194

 Score =  286 bits (732), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 128/193 (66%), Positives = 162/193 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT+RGERSYDI+SRLLKERI+F+TGQ+EDHMA LI AQ+LFLEAENP+K+I
Sbjct: 1   MALVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAENPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+AG KG RF LPN+R+
Sbjct: 61  FLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLTAGAKGKRFCLPNSRV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DIE HA++I+K+K R+NE+  K+ GK  EE+E+  +RD  +SA E+
Sbjct: 121 MIHQPLGGFQGQATDIEIHAREILKVKSRMNELMAKHTGKPLEEIERDTERDRFLSAEES 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD +   R
Sbjct: 181 VKYGLVDDIFNRR 193


>gi|251798425|ref|YP_003013156.1| ATP-dependent Clp protease proteolytic subunit ClpP [Paenibacillus
           sp. JDR-2]
 gi|247546051|gb|ACT03070.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
           sp. JDR-2]
          Length = 195

 Score =  286 bits (732), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 123/192 (64%), Positives = 159/192 (82%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQTNRGERSYDIYSRLLK+RI+F+   I+D +A  + AQLLFL A++P+K+I
Sbjct: 1   MNLVPIVVEQTNRGERSYDIYSRLLKDRIIFLGSAIDDDVANSVIAQLLFLAADDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMAIYDTMQ+IKP +ST CMG AASMGSLLL+AG KG RFALPNA +
Sbjct: 61  HLYINSPGGSVTAGMAIYDTMQYIKPDVSTICMGMAASMGSLLLTAGAKGKRFALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDI+ HA  I+K K++LNEIYV+  G+ YE++++  DRD+ MSA +A
Sbjct: 121 MIHQPLGGVRGQASDIKIHADWILKTKQKLNEIYVERTGQPYEKIDRDTDRDNFMSAEDA 180

Query: 196 CDWGVVDKVLMS 207
            ++G++DKV+ +
Sbjct: 181 LNYGLIDKVITT 192


>gi|304437034|ref|ZP_07396997.1| ATP-dependent Clp protease proteolytic subunit [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
 gi|304369985|gb|EFM23647.1| ATP-dependent Clp protease proteolytic subunit [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
          Length = 203

 Score =  286 bits (732), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 114/198 (57%), Positives = 157/198 (79%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VPMVVE + RGER+YDIYSRLLKERI+F+ G I+D +A +I AQ+LFLE+E+P K+I LY
Sbjct: 5   VPMVVETSGRGERAYDIYSRLLKERIIFLGGPIDDSVANVIVAQMLFLESEDPDKDIHLY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGVVTAG+AIYDTMQ+IKP +ST C+GQAASMGS+LL+AG KG R+ALP+ARI++H
Sbjct: 65  INSPGGVVTAGLAIYDTMQYIKPDVSTICVGQAASMGSILLTAGAKGKRYALPHARIMIH 124

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQ++DI+  A++I++++   NEI   + G+  E++    +RD+ MSA EA ++
Sbjct: 125 QPLGGAQGQSTDIQIQAKEILRLREVGNEILAHHTGQDTEKINVDTERDNFMSAEEAKEY 184

Query: 199 GVVDKVLMSRIDIEEKSK 216
           G++D+V++   D    SK
Sbjct: 185 GLIDEVVLRPKDTSADSK 202


>gi|27380055|ref|NP_771584.1| ATP-dependent Clp protease proteolytic subunit [Bradyrhizobium
           japonicum USDA 110]
 gi|67460543|sp|Q89KG1|CLPP2_BRAJA RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|27353209|dbj|BAC50209.1| ATP-dependent Clp protease proteolytic subunit [Bradyrhizobium
           japonicum USDA 110]
          Length = 211

 Score =  286 bits (732), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 138/208 (66%), Positives = 180/208 (86%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  + ++ LVPMVVEQTNRGER+YDI+SRLLKERI+F+TG +ED M+TL+ AQLLFLEA
Sbjct: 2   RDPVETYMNLVPMVVEQTNRGERAYDIFSRLLKERIIFLTGPVEDGMSTLVVAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEIS+YINSPGGVVT+G+AIYDTMQFI+PP+ST C GQAASMGSLLL+AGEK MRF
Sbjct: 62  ENPKKEISMYINSPGGVVTSGLAIYDTMQFIRPPVSTLCTGQAASMGSLLLAAGEKDMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPNARI++HQPSGGF GQA+DI  HAQ+I+ +K+RLNEIYVK+ G+TY+ +E  L+RD 
Sbjct: 122 SLPNARIMVHQPSGGFQGQATDIMLHAQEILNLKKRLNEIYVKHTGQTYKTIEDALERDK 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIEEKSK 216
            ++A++A ++G+VD+V+  R +    +K
Sbjct: 182 FLTANDAKEFGLVDRVIDKRAEEPAAAK 209


>gi|294670412|ref|ZP_06735294.1| hypothetical protein NEIELOOT_02131 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307876|gb|EFE49119.1| hypothetical protein NEIELOOT_02131 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 211

 Score =  286 bits (732), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 117/206 (56%), Positives = 161/206 (78%), Gaps = 2/206 (0%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
            E     L+P V+EQ+ RGER++DIYSRLLKERI+F+ G + DH A L+ AQ+LFLE+EN
Sbjct: 3   PEITNNTLIPTVIEQSGRGERAFDIYSRLLKERIIFLVGPVTDHTANLVVAQMLFLESEN 62

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
           P K+I  YI+SPGG VTAGM+++DTM FIKP +ST C+GQAASMG+ LLSAG KG RFAL
Sbjct: 63  PDKDIFFYIDSPGGSVTAGMSVFDTMNFIKPDVSTLCLGQAASMGAFLLSAGAKGKRFAL 122

Query: 131 PNARILLHQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           PN+RI++HQP  SGG  GQASDIE HA++++K+K++LNE+  K+ G+  E+VE+  DRD+
Sbjct: 123 PNSRIMIHQPLISGGLGGQASDIEIHARELIKLKQKLNELLAKHTGQPLEKVERDTDRDN 182

Query: 189 IMSASEACDWGVVDKVLMSRIDIEEK 214
            MS+  A ++G++D+V+ +R D  + 
Sbjct: 183 FMSSEAAKEYGLIDEVIATRADAFKA 208


>gi|302035647|ref|YP_003795969.1| ATP-dependent Clp protease proteolytic subunit clpP [Candidatus
           Nitrospira defluvii]
 gi|300603711|emb|CBK40042.1| ATP-dependent Clp protease, proteolytic subunit clpP [Candidatus
           Nitrospira defluvii]
          Length = 211

 Score =  286 bits (732), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 115/190 (60%), Positives = 158/190 (83%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+V+EQTNRGER+YDIYSRLLK+RI+F+   I+D  A LI AQLLFLEAE+P+K+I+L
Sbjct: 2   LVPIVIEQTNRGERAYDIYSRLLKDRIIFLGAPIDDVFANLIIAQLLFLEAEDPEKDINL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+ IYDTMQ++KP I+T C+GQAASMG+ LL+AG KG R+ALPNAR+++
Sbjct: 62  YINSPGGSVTAGLGIYDTMQYVKPAINTICLGQAASMGAFLLTAGTKGKRYALPNARVMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQA++I+ HA++I+KI+ RLNEI  K+ G+  +++ +  +RD+ MS+ EA  
Sbjct: 122 HQPMGGFQGQATEIDIHAREILKIRERLNEIMAKHTGQPLDKISQDTERDYFMSSEEAKR 181

Query: 198 WGVVDKVLMS 207
           +G++D+V+  
Sbjct: 182 YGLIDEVITR 191


>gi|225627583|ref|ZP_03785620.1| ATP-dependent Clp protease proteolytic subunit [Brucella ceti str.
           Cudo]
 gi|237815533|ref|ZP_04594530.1| ATP-dependent Clp protease proteolytic subunit [Brucella abortus
           str. 2308 A]
 gi|225617588|gb|EEH14633.1| ATP-dependent Clp protease proteolytic subunit [Brucella ceti str.
           Cudo]
 gi|237788831|gb|EEP63042.1| ATP-dependent Clp protease proteolytic subunit [Brucella abortus
           str. 2308 A]
          Length = 247

 Score =  286 bits (732), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 148/216 (68%), Positives = 186/216 (86%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           + ++    +D  +  + LVPMVVEQTNRGER+YDI+SRLLKERI+FV G +ED M+ L+C
Sbjct: 32  LIYQRPIMRDPIETVMNLVPMVVEQTNRGERAYDIFSRLLKERIIFVNGPVEDGMSMLVC 91

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLEAENP+KEI++YINSPGGVVT+GMAIYDTMQFI+PP+ST CMGQAASMGSLLL+
Sbjct: 92  AQLLFLEAENPKKEINMYINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLT 151

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG  G R+ALPNARI++HQPSGGF GQASDIERHAQDI+K+KRRLNEIYVK+ G+ Y+ +
Sbjct: 152 AGATGHRYALPNARIMVHQPSGGFQGQASDIERHAQDIIKMKRRLNEIYVKHTGRDYDTI 211

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           E+TLDRDH M+A EA ++G++DKV+ +R    ++SK
Sbjct: 212 ERTLDRDHFMTAQEALEFGLIDKVVEARDVSADESK 247


>gi|159904323|ref|YP_001551667.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9211]
 gi|159889499|gb|ABX09713.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9211]
          Length = 200

 Score =  286 bits (732), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 101/191 (52%), Positives = 144/191 (75%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G++P VVEQ+ RG+R++DIYSRLL+ERI+F+   + D +A  + AQ+LFLEAE+P+K+I 
Sbjct: 8   GVLPTVVEQSGRGDRAFDIYSRLLRERIIFLGTDVNDQVADALVAQMLFLEAEDPEKDIQ 67

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAG+AIYDTMQ + P + T C G AASMG+ LLS G KG R +LPN+RI+
Sbjct: 68  LYINSPGGSVTAGLAIYDTMQQVTPDVVTICYGLAASMGAFLLSGGTKGKRVSLPNSRIM 127

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA +IE  A++I+ +K  LN +  ++ G+  +++ +  DRDH +S  EA 
Sbjct: 128 IHQPLGGAQGQAVEIEIQAKEILFLKETLNGLLSEHTGQPIDKIAEDTDRDHFLSPQEAV 187

Query: 197 DWGVVDKVLMS 207
           ++G++DKV+ S
Sbjct: 188 EYGLIDKVINS 198


>gi|15923758|ref|NP_371292.1| ATP-dependent Clp protease proteolytic subunit-like protein
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926445|ref|NP_373978.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus N315]
 gi|21282459|ref|NP_645547.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus MW2]
 gi|49483025|ref|YP_040249.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|49485640|ref|YP_042861.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|57650109|ref|YP_185707.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus COL]
 gi|82750474|ref|YP_416215.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus RF122]
 gi|87161484|ref|YP_493453.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|88194551|ref|YP_499347.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|148267228|ref|YP_001246171.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus JH9]
 gi|150393277|ref|YP_001315952.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus JH1]
 gi|151220948|ref|YP_001331770.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156979096|ref|YP_001441355.1| ATP-dependent Clp protease proteolytic subunit homologue
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|161509038|ref|YP_001574697.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|221141842|ref|ZP_03566335.1| endopeptidase ClpP [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253317258|ref|ZP_04840471.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus str. CF-Marseille]
 gi|253731397|ref|ZP_04865562.1| ATP-dependent Clp protease proteolytic subunit family protein
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253732783|ref|ZP_04866948.1| ATP-dependent Clp protease proteolytic subunit family protein
           [Staphylococcus aureus subsp. aureus TCH130]
 gi|255005559|ref|ZP_05144160.2| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257424888|ref|ZP_05601315.1| clp protease [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257427556|ref|ZP_05603955.1| clp protease [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430187|ref|ZP_05606571.1| endopeptidase ClpP [Staphylococcus aureus subsp. aureus 68-397]
 gi|257432888|ref|ZP_05609248.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257435792|ref|ZP_05611840.1| clp protease [Staphylococcus aureus subsp. aureus M876]
 gi|257794910|ref|ZP_05643889.1| clp protease [Staphylococcus aureus A9781]
 gi|258418226|ref|ZP_05682491.1| ATP-dependent Clp protease proteolytic subunit ClpP [Staphylococcus
           aureus A9763]
 gi|258421524|ref|ZP_05684449.1| clp protease [Staphylococcus aureus A9719]
 gi|258423417|ref|ZP_05686308.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus A9635]
 gi|258439133|ref|ZP_05690177.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus A9299]
 gi|258440939|ref|ZP_05690774.1| ATP-dependent Clp protease proteolytic subunit ClpP [Staphylococcus
           aureus A8115]
 gi|258445769|ref|ZP_05693946.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus A6300]
 gi|258449581|ref|ZP_05697683.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus A6224]
 gi|258452184|ref|ZP_05700200.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus A5948]
 gi|258453981|ref|ZP_05701953.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus A5937]
 gi|262049552|ref|ZP_06022422.1| hypothetical protein SAD30_0974 [Staphylococcus aureus D30]
 gi|262052698|ref|ZP_06024889.1| hypothetical protein SA930_1868 [Staphylococcus aureus 930918-3]
 gi|269202390|ref|YP_003281659.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus ED98]
 gi|282895064|ref|ZP_06303285.1| Clp protease [Staphylococcus aureus A8117]
 gi|282903398|ref|ZP_06311289.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus C160]
 gi|282905178|ref|ZP_06313035.1| endopeptidase ClpP [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282908157|ref|ZP_06315988.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282910415|ref|ZP_06318219.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282913610|ref|ZP_06321399.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus M899]
 gi|282916110|ref|ZP_06323873.1| Clp protease [Staphylococcus aureus subsp. aureus D139]
 gi|282918561|ref|ZP_06326298.1| Clp protease [Staphylococcus aureus subsp. aureus C427]
 gi|282922066|ref|ZP_06329763.1| Clp protease [Staphylococcus aureus A9765]
 gi|282923527|ref|ZP_06331207.1| Clp protease [Staphylococcus aureus subsp. aureus C101]
 gi|282926635|ref|ZP_06334265.1| Clp protease [Staphylococcus aureus A10102]
 gi|283769931|ref|ZP_06342823.1| ATP-dependent Clp protease subunit [Staphylococcus aureus subsp.
           aureus H19]
 gi|283957600|ref|ZP_06375053.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|284023791|ref|ZP_06378189.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus 132]
 gi|293500653|ref|ZP_06666504.1| Clp protease [Staphylococcus aureus subsp. aureus 58-424]
 gi|293509601|ref|ZP_06668312.1| Clp protease [Staphylococcus aureus subsp. aureus M809]
 gi|293524187|ref|ZP_06670874.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus M1015]
 gi|294850496|ref|ZP_06791225.1| Clp protease [Staphylococcus aureus A9754]
 gi|295406492|ref|ZP_06816298.1| Clp protease [Staphylococcus aureus A8819]
 gi|295427347|ref|ZP_06819982.1| Clp protease [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296276994|ref|ZP_06859501.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus MR1]
 gi|297208504|ref|ZP_06924933.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|297245218|ref|ZP_06929092.1| Clp protease [Staphylococcus aureus A8796]
 gi|297590298|ref|ZP_06948937.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus MN8]
 gi|300912596|ref|ZP_07130039.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|304381609|ref|ZP_07364259.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|54036854|sp|P63786|CLPP_STAAW RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|54036862|sp|P99089|CLPP_STAAN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|54040892|sp|P63785|CLPP_STAAM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|56748671|sp|Q6GB62|CLPP_STAAS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|56748685|sp|Q6GIM3|CLPP_STAAR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|67460165|sp|Q5HHQ0|CLPP_STAAC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|90183185|sp|Q2YSF8|CLPP_STAAB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|116243169|sp|Q2G036|CLPP_STAA8 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|124013828|sp|Q2FIM5|CLPP_STAA3 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166214713|sp|A7WZR9|CLPP_STAA1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|172048797|sp|A6QF76|CLPP_STAAE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|189082468|sp|A6TZP7|CLPP_STAA2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|189082469|sp|A5IQX2|CLPP_STAA9 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|189082470|sp|A8Z045|CLPP_STAAT RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|13700659|dbj|BAB41956.1| clpP [Staphylococcus aureus subsp. aureus N315]
 gi|14246537|dbj|BAB56930.1| ATP-dependent Clp protease proteolytic subunit homologue
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|21203896|dbj|BAB94595.1| clpP [Staphylococcus aureus subsp. aureus MW2]
 gi|49241154|emb|CAG39832.1| putative ATP-dependent Clp protease proteolytic subunit
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49244083|emb|CAG42509.1| putative ATP-dependent Clp protease proteolytic subunit
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57284295|gb|AAW36389.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus COL]
 gi|82656005|emb|CAI80410.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus RF122]
 gi|87127458|gb|ABD21972.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|87202109|gb|ABD29919.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|147740297|gb|ABQ48595.1| ATP-dependent Clp protease proteolytic subunit ClpP [Staphylococcus
           aureus subsp. aureus JH9]
 gi|149945729|gb|ABR51665.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus JH1]
 gi|150373748|dbj|BAF67008.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156721231|dbj|BAF77648.1| ATP-dependent Clp protease proteolytic subunit homologue
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|160367847|gb|ABX28818.1| S14 family endopeptidase ClpP [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253724847|gb|EES93576.1| ATP-dependent Clp protease proteolytic subunit family protein
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253729257|gb|EES97986.1| ATP-dependent Clp protease proteolytic subunit family protein
           [Staphylococcus aureus subsp. aureus TCH130]
 gi|257272458|gb|EEV04581.1| clp protease [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275749|gb|EEV07222.1| clp protease [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257279384|gb|EEV09985.1| endopeptidase ClpP [Staphylococcus aureus subsp. aureus 68-397]
 gi|257282303|gb|EEV12438.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257284983|gb|EEV15102.1| clp protease [Staphylococcus aureus subsp. aureus M876]
 gi|257788882|gb|EEV27222.1| clp protease [Staphylococcus aureus A9781]
 gi|257839019|gb|EEV63498.1| ATP-dependent Clp protease proteolytic subunit ClpP [Staphylococcus
           aureus A9763]
 gi|257842450|gb|EEV66874.1| clp protease [Staphylococcus aureus A9719]
 gi|257846478|gb|EEV70501.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus A9635]
 gi|257847705|gb|EEV71702.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus A9299]
 gi|257852453|gb|EEV76374.1| ATP-dependent Clp protease proteolytic subunit ClpP [Staphylococcus
           aureus A8115]
 gi|257855345|gb|EEV78283.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus A6300]
 gi|257857089|gb|EEV79988.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus A6224]
 gi|257860399|gb|EEV83231.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus A5948]
 gi|257863846|gb|EEV86602.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus A5937]
 gi|259159395|gb|EEW44448.1| hypothetical protein SA930_1868 [Staphylococcus aureus 930918-3]
 gi|259162388|gb|EEW46960.1| hypothetical protein SAD30_0974 [Staphylococcus aureus D30]
 gi|262074680|gb|ACY10653.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus ED98]
 gi|269940345|emb|CBI48722.1| putative ATP-dependent Clp protease proteolyticsubunit
           [Staphylococcus aureus subsp. aureus TW20]
 gi|282314395|gb|EFB44785.1| Clp protease [Staphylococcus aureus subsp. aureus C101]
 gi|282317695|gb|EFB48067.1| Clp protease [Staphylococcus aureus subsp. aureus C427]
 gi|282320058|gb|EFB50405.1| Clp protease [Staphylococcus aureus subsp. aureus D139]
 gi|282322642|gb|EFB52964.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus M899]
 gi|282325807|gb|EFB56115.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327822|gb|EFB58104.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282331585|gb|EFB61097.1| endopeptidase ClpP [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282591528|gb|EFB96600.1| Clp protease [Staphylococcus aureus A10102]
 gi|282593724|gb|EFB98716.1| Clp protease [Staphylococcus aureus A9765]
 gi|282596353|gb|EFC01314.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus C160]
 gi|282762560|gb|EFC02699.1| Clp protease [Staphylococcus aureus A8117]
 gi|283460078|gb|EFC07168.1| ATP-dependent Clp protease subunit [Staphylococcus aureus subsp.
           aureus H19]
 gi|283470062|emb|CAQ49273.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus ST398]
 gi|283791051|gb|EFC29866.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|285816470|gb|ADC36957.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus 04-02981]
 gi|290921150|gb|EFD98211.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus M1015]
 gi|291095658|gb|EFE25919.1| Clp protease [Staphylococcus aureus subsp. aureus 58-424]
 gi|291467698|gb|EFF10213.1| Clp protease [Staphylococcus aureus subsp. aureus M809]
 gi|294822634|gb|EFG39074.1| Clp protease [Staphylococcus aureus A9754]
 gi|294968637|gb|EFG44660.1| Clp protease [Staphylococcus aureus A8819]
 gi|295128735|gb|EFG58366.1| Clp protease [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296886759|gb|EFH25663.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|297177889|gb|EFH37138.1| Clp protease [Staphylococcus aureus A8796]
 gi|297576597|gb|EFH95312.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus MN8]
 gi|298694101|gb|ADI97323.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus ED133]
 gi|300886842|gb|EFK82044.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|302332479|gb|ADL22672.1| putative ATP-dependent Clp protease proteolytic subunit
           [Staphylococcus aureus subsp. aureus JKD6159]
 gi|302750665|gb|ADL64842.1| putative ATP-dependent Clp protease proteolytic subunit
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304339972|gb|EFM05916.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|312438803|gb|ADQ77874.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|312829260|emb|CBX34102.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315129024|gb|EFT85021.1| S14 family endopeptidase ClpP [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315194387|gb|EFU24779.1| S14 family endopeptidase ClpP [Staphylococcus aureus subsp. aureus
           CGS00]
 gi|315196246|gb|EFU26600.1| S14 family endopeptidase ClpP [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320139896|gb|EFW31757.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320142013|gb|EFW33841.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus MRSA177]
 gi|323438624|gb|EGA96368.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus O11]
 gi|323441949|gb|EGA99586.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus O46]
 gi|329313489|gb|AEB87902.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus T0131]
 gi|329723806|gb|EGG60334.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus 21189]
 gi|329724642|gb|EGG61149.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus 21172]
 gi|329729644|gb|EGG66045.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 195

 Score =  285 bits (731), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 105/195 (53%), Positives = 149/195 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+E TNRGER+YDIYSRLLK+RI+ +  QI+D++A  I +QLLFL+A++ +K+I
Sbjct: 1   MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG AIYDT+Q IKP + T C+G AASMGS LL+AG KG RFALPNA +
Sbjct: 61  YLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A  I+K + +LN I  +  G++ E+++K  DRD+ ++A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEA 180

Query: 196 CDWGVVDKVLMSRID 210
            ++G++D+V++    
Sbjct: 181 KEYGLIDEVMVPETK 195


>gi|94310823|ref|YP_584033.1| ATP-dependent Clp protease proteolytic subunit [Cupriavidus
           metallidurans CH34]
 gi|116243154|sp|Q1LM62|CLPP_RALME RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|93354675|gb|ABF08764.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Cupriavidus metallidurans CH34]
          Length = 216

 Score =  285 bits (731), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 120/197 (60%), Positives = 154/197 (78%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E   LGLVPMVVEQ+ RGER+YDIYSRLLKER+VF+ G++ D  A L+ AQLLFLE+ENP
Sbjct: 19  ETQGLGLVPMVVEQSGRGERAYDIYSRLLKERVVFMVGEVNDQTANLVVAQLLFLESENP 78

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K++SLYINSPGG V+AG+AIYDTMQFIKP + T CMG AASMG+ LL+AG KG R ALP
Sbjct: 79  DKDVSLYINSPGGSVSAGLAIYDTMQFIKPDVQTLCMGMAASMGAFLLAAGAKGKRSALP 138

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+RI++HQP GG  GQASDIE  A++I+ ++ RLN I  +  G+  E++ +  DRD+ MS
Sbjct: 139 NSRIMIHQPLGGARGQASDIEIQAREILYLRERLNSILSEVTGQPVEKIARDTDRDNFMS 198

Query: 192 ASEACDWGVVDKVLMSR 208
             +A D+G++DKV+  R
Sbjct: 199 GDQAVDYGLIDKVITRR 215


>gi|56460113|ref|YP_155394.1| ATP-dependent Clp protease proteolytic subunit [Idiomarina
           loihiensis L2TR]
 gi|67460202|sp|Q5QXN8|CLPP_IDILO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|56179123|gb|AAV81845.1| Protease subunit of ATP-dependent Clp protease [Idiomarina
           loihiensis L2TR]
          Length = 206

 Score =  285 bits (731), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 128/203 (63%), Positives = 161/203 (79%)

Query: 8   KKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
             D +D    LVPMVVEQT++GERSYDIYSRLLKER++F  GQ+EDHMA LI AQLLFLE
Sbjct: 2   SSDIQDPMAQLVPMVVEQTSKGERSYDIYSRLLKERVIFCCGQVEDHMANLIVAQLLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           ++NP K+I LYINSPGGVVTAGMAIYDTM+FIKP +ST CMGQAASMG+ LL+ G +G R
Sbjct: 62  SDNPDKDIYLYINSPGGVVTAGMAIYDTMRFIKPDVSTVCMGQAASMGAFLLAGGAQGKR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           + LPN+R+++HQP GGF GQASD E HA+ I+ +K RLN +  +N G+ YE+V +  DRD
Sbjct: 122 YCLPNSRVMIHQPLGGFQGQASDFEIHAKQILDLKERLNRMLAENTGQDYEKVARDTDRD 181

Query: 188 HIMSASEACDWGVVDKVLMSRID 210
           H +SA E+ D+G+VD +L  R +
Sbjct: 182 HFLSAEESIDYGLVDGILRQRGE 204


>gi|320354136|ref|YP_004195475.1| ATP-dependent Clp protease proteolytic subunit ClpP [Desulfobulbus
           propionicus DSM 2032]
 gi|320122638|gb|ADW18184.1| ATP-dependent Clp protease proteolytic subunit ClpP [Desulfobulbus
           propionicus DSM 2032]
          Length = 200

 Score =  285 bits (731), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 115/196 (58%), Positives = 164/196 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQ+ RGER++DIYSRLLKERI+F+  Q+ D +A+L+ AQLLFLEAE+P K+I
Sbjct: 1   MNLVPMVVEQSPRGERAFDIYSRLLKERIIFLGTQVNDDVASLVVAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           + YINSPGG VTAGMAIYDTMQ+I+  ++T CMGQAASMG+LLL++G  G RFALPN+RI
Sbjct: 61  TFYINSPGGSVTAGMAIYDTMQYIRCDVATLCMGQAASMGALLLASGAAGKRFALPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG+ GQA+DI+ HA++I++++  LN I  ++ GK+ ++++   +RD+ MSA+EA
Sbjct: 121 MIHQPMGGYQGQATDIDIHAREILRMRHDLNTILARHTGKSMKKIQADTERDNFMSATEA 180

Query: 196 CDWGVVDKVLMSRIDI 211
           C++G++DKVL +R ++
Sbjct: 181 CEYGIIDKVLTNREEL 196


>gi|261404070|ref|YP_003240311.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
           sp. Y412MC10]
 gi|329927993|ref|ZP_08281997.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Paenibacillus sp. HGF5]
 gi|261280533|gb|ACX62504.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
           sp. Y412MC10]
 gi|328938097|gb|EGG34494.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Paenibacillus sp. HGF5]
          Length = 198

 Score =  285 bits (731), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 110/192 (57%), Positives = 150/192 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +PMVVEQ+NRGER+YDIYSRLLK+RI+F+   + D +A  I AQ+LFL AE+P+K+I
Sbjct: 1   MSFIPMVVEQSNRGERAYDIYSRLLKDRIIFLGSDVNDVVANSIIAQMLFLSAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +TAGMAI+DTMQFIKP +ST C+G AASMG+ LL+AG KG R+ LPN+ I
Sbjct: 61  HLYINSPGGSITAGMAIFDTMQFIKPDVSTICVGMAASMGAFLLNAGAKGKRYGLPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DIE  A+ I+K++ +LN I  +  G+  E +EK  DRD+ M+A EA
Sbjct: 121 MIHQPLGGAQGQATDIEIRARRILKMRDKLNRILSERTGQPLERIEKDTDRDYFMTADEA 180

Query: 196 CDWGVVDKVLMS 207
            ++G++D+VL +
Sbjct: 181 KEYGLIDQVLEN 192


>gi|326502578|dbj|BAJ95352.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326506866|dbj|BAJ91474.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 300

 Score =  285 bits (731), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 120/193 (62%), Positives = 159/193 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMVVE T+RGER+YDI+SRLLKERIV + G I D  A+L+ AQLLFLE+ENP K IS
Sbjct: 71  GLVPMVVETTSRGERAYDIFSRLLKERIVCIHGPIADETASLVVAQLLFLESENPLKPIS 130

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGVVTAG+AIYDTMQ+I+ P++T C+GQAASMGSLLL+AG +G R ALPNAR++
Sbjct: 131 LYINSPGGVVTAGLAIYDTMQYIRCPVNTICIGQAASMGSLLLAAGARGERRALPNARVM 190

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  GQA+DI   A++I+K++ RLN+IY K+ G+  +++E+ ++RD  M   EA 
Sbjct: 191 IHQPSGGAQGQATDIAIQAKEILKLRDRLNKIYAKHTGQNIDKIEQCMERDLFMDPEEAR 250

Query: 197 DWGVVDKVLMSRI 209
           +WG++D+V+ +R 
Sbjct: 251 EWGLIDEVIENRP 263


>gi|253579815|ref|ZP_04857083.1| clp protease [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848814|gb|EES76776.1| clp protease [Ruminococcus sp. 5_1_39BFAA]
          Length = 193

 Score =  285 bits (731), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 114/193 (59%), Positives = 148/193 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLLK+RI+F+  ++ D  A LI +QLLFLEAE+P K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLKDRIIFLGEEVNDVSAGLIVSQLLFLEAEDPGKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMAIYDTMQ+IK  +ST C+G AASMG+ LL+ G KG RFALP++ I
Sbjct: 61  QLYINSPGGSVTAGMAIYDTMQYIKCDVSTICLGMAASMGAFLLAGGAKGKRFALPHSTI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I+  A  I + KR LNE+   N G+  E VE+  DRD+ M+A EA
Sbjct: 121 MIHQPSGGAQGQATEIQIVADHIAQTKRTLNELLAANTGQPIEVVERDTDRDNYMTAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D V+M +
Sbjct: 181 KAYGLIDGVVMHK 193


>gi|307822658|ref|ZP_07652889.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylobacter
           tundripaludum SV96]
 gi|307736262|gb|EFO07108.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylobacter
           tundripaludum SV96]
          Length = 215

 Score =  285 bits (731), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 120/210 (57%), Positives = 168/210 (80%)

Query: 5   GCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLL 64
              +  + +   GLVP+V+EQT RGERS+DIYSRLLKER++F+ GQ+ED+ A LI AQLL
Sbjct: 6   ARNQMMAPEAAGGLVPIVIEQTARGERSFDIYSRLLKERVIFLVGQVEDYSANLIVAQLL 65

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           FLE+ENP K+I LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQAASMG+LLL+ G K
Sbjct: 66  FLESENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDVSTMCIGQAASMGALLLAGGAK 125

Query: 125 GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
           G R+ LP++R+++HQP GG+ GQASDI+ HA++I+ I+ +LN+I   + G+  E+V++  
Sbjct: 126 GKRYCLPHSRMMIHQPLGGYQGQASDIDIHAREILLIREKLNKILSDHTGQPMEKVQQDT 185

Query: 185 DRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           DRD+ +SA++A  +G++D+VL+SR  + +K
Sbjct: 186 DRDNFLSANDAVSYGLIDQVLLSRATVADK 215


>gi|121534156|ref|ZP_01665981.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermosinus
           carboxydivorans Nor1]
 gi|121307259|gb|EAX48176.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermosinus
           carboxydivorans Nor1]
          Length = 203

 Score =  285 bits (731), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 112/198 (56%), Positives = 156/198 (78%), Gaps = 3/198 (1%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP+VVEQ+NRGER+YDIYSRLLK+RIVF+ G I+DH+A L+ AQLLFLE+E+P K+I
Sbjct: 1   MTFVPIVVEQSNRGERAYDIYSRLLKDRIVFIGGPIDDHVANLVIAQLLFLESEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVTAG+AIYDTMQ+IKP +ST C+G AASM ++LL+AG  G R+ALP AR+
Sbjct: 61  HLYINSPGGVVTAGLAIYDTMQYIKPDVSTICLGSAASMAAVLLAAGAPGKRYALPYARV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+  A++I++++  LN+I  ++ GK  E ++   +RD+ MS+ EA
Sbjct: 121 MIHQPLGGAQGQATDIQIQAREILRLREILNDILARHTGKPLERIQHDTERDYFMSSEEA 180

Query: 196 CDWGVVDKVL---MSRID 210
            ++G++D V+     R D
Sbjct: 181 KEYGIIDAVVVRGEQRKD 198


>gi|163815266|ref|ZP_02206643.1| hypothetical protein COPEUT_01426 [Coprococcus eutactus ATCC 27759]
 gi|158449461|gb|EDP26456.1| hypothetical protein COPEUT_01426 [Coprococcus eutactus ATCC 27759]
          Length = 193

 Score =  285 bits (731), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 109/193 (56%), Positives = 149/193 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP VVEQT+RGER++DIYSRLLK+RI+F+  ++ D  A+L+ AQLLFLE+E+P K+I
Sbjct: 1   MALVPYVVEQTSRGERTFDIYSRLLKDRIIFLGDEVNDATASLVIAQLLFLESEDPSKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG VTAGM IYDTM++IK  +ST C G AASMG+ LL+ G KG R+ALPN+ I
Sbjct: 61  SLYINSPGGSVTAGMGIYDTMRYIKCDVSTICCGMAASMGAFLLAGGAKGKRYALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K K +LN++  +N GK  + +    DRD+ M+A EA
Sbjct: 121 MIHQPLGGTQGQATEIEIAARHILKTKEKLNKMLAENTGKPLDVIAADTDRDNWMTADEA 180

Query: 196 CDWGVVDKVLMSR 208
           C +G++D V+ +R
Sbjct: 181 CAYGLIDSVITNR 193


>gi|304387382|ref|ZP_07369574.1| ATP-dependent Clp protease proteolytic subunit [Neisseria
           meningitidis ATCC 13091]
 gi|304338633|gb|EFM04751.1| ATP-dependent Clp protease proteolytic subunit [Neisseria
           meningitidis ATCC 13091]
          Length = 209

 Score =  285 bits (731), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 122/197 (61%), Positives = 159/197 (80%), Gaps = 2/197 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ+ RGER++DIYSRLLKERIVF+ G + D  A L+ AQLLFLE+ENP K+I  
Sbjct: 12  LVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFF 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM+IYDTM FIKP +ST C+GQAASMG+ LLSAGEKG RFALPN+RI++
Sbjct: 72  YINSPGGSVTAGMSIYDTMNFIKPDVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMI 131

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASDIE HA++++KIK +LN +  K+CG+   ++E+  DRD+ MSA EA
Sbjct: 132 HQPLISGGLGGQASDIEIHARELLKIKEKLNRLMAKHCGRDLADLERDTDRDNFMSAEEA 191

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G++D++L +R  ++
Sbjct: 192 KEYGLIDQILENRASLQ 208


>gi|152977369|ref|YP_001376886.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           subsp. cytotoxis NVH 391-98]
 gi|152026121|gb|ABS23891.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cytotoxicus NVH 391-98]
          Length = 193

 Score =  285 bits (731), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 107/193 (55%), Positives = 154/193 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFLE+++P+K+I
Sbjct: 1   MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +TAGMAIYDTMQFIKP +ST C+G AASMG+ LL+AGEKG RFALPN+ +
Sbjct: 61  HLYINSPGGSITAGMAIYDTMQFIKPNVSTICIGMAASMGAFLLAAGEKGKRFALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN+I  +  G+  E +E+  DRD+ M+A +A
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILFLRDKLNKILAERTGQPLEVIERDTDRDNFMTAEKA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++D++  +R
Sbjct: 181 LEYGLIDRIFTNR 193


>gi|149376712|ref|ZP_01894470.1| ATP-dependent Clp protease proteolytic subunit [Marinobacter
           algicola DG893]
 gi|149358951|gb|EDM47417.1| ATP-dependent Clp protease proteolytic subunit [Marinobacter
           algicola DG893]
          Length = 227

 Score =  285 bits (731), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 114/194 (58%), Positives = 152/194 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
            GLVP+V+EQT RGERS+DI+SRLLKER++F+ G +EDHMA LI AQLLFLE+ENP K+I
Sbjct: 31  SGLVPIVIEQTARGERSFDIFSRLLKERVIFLVGPVEDHMANLIVAQLLFLESENPDKDI 90

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGM+IYDTMQFIKP ++T C+GQAASMG+ LL+ G +G R  LPN+R+
Sbjct: 91  HLYINSPGGSVTAGMSIYDTMQFIKPDVATLCVGQAASMGAFLLAGGAEGKRACLPNSRV 150

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG+ GQA+DIE H ++I+KI+  LN I   + G+  + + K  DRD+ M   +A
Sbjct: 151 MIHQPLGGYQGQATDIEIHTREILKIRHTLNSILAHHTGQKLDTIAKDTDRDNFMDPQQA 210

Query: 196 CDWGVVDKVLMSRI 209
            D+G++D +L  R+
Sbjct: 211 KDYGLIDSILDKRV 224


>gi|315641411|ref|ZP_07896485.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           italicus DSM 15952]
 gi|315482847|gb|EFU73369.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           italicus DSM 15952]
          Length = 194

 Score =  285 bits (731), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 108/194 (55%), Positives = 151/194 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQ++RGER+YDIYSRLLK+RI+ ++GQ+ D +A  I +QLLFL+A++ +K+I
Sbjct: 1   MNLIPTVIEQSSRGERAYDIYSRLLKDRIIMLSGQVTDDLANSIISQLLFLDAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG+AIYDTM F+K  + T  MG AASMGS LL+AG+KG RFALPNA I
Sbjct: 61  YLYINSPGGSVTAGLAIYDTMNFVKADVQTIVMGMAASMGSFLLTAGKKGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K + RLN I  +  G+  E +EK  DRD+ M+A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAARHILKTRERLNNILAERTGQPLEVIEKDTDRDNFMTAQEA 180

Query: 196 CDWGVVDKVLMSRI 209
            D+G++D++L+++ 
Sbjct: 181 KDYGLIDQILVNKK 194


>gi|330503117|ref|YP_004379986.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           mendocina NK-01]
 gi|328917403|gb|AEB58234.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           mendocina NK-01]
          Length = 213

 Score =  285 bits (730), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 125/192 (65%), Positives = 157/192 (81%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+EQ+ RGER+YDIYSRLLKER++F+ GQ+ED+MA LICAQLLFLEAENP K+I 
Sbjct: 18  GLVPMVIEQSARGERAYDIYSRLLKERVIFMVGQVEDYMANLICAQLLFLEAENPDKDIH 77

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGMAIYDTMQFIK  +ST C+GQA SMG+ LL+ G KG RF LPN+R++
Sbjct: 78  LYINSPGGSVTAGMAIYDTMQFIKADVSTTCIGQACSMGAFLLAGGAKGKRFCLPNSRVM 137

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+ I+ RLNE+   + G++ E +E+  +RD+ MSAS A 
Sbjct: 138 IHQPLGGFQGQASDIEIHAKEILFIRERLNELLAHHTGQSLETIERDTNRDNFMSASRAV 197

Query: 197 DWGVVDKVLMSR 208
           ++G+VD V   R
Sbjct: 198 EYGLVDAVHEKR 209


>gi|288958758|ref|YP_003449099.1| ATP-dependent Clp protease, protease subunit [Azospirillum sp.
           B510]
 gi|288911066|dbj|BAI72555.1| ATP-dependent Clp protease, protease subunit [Azospirillum sp.
           B510]
          Length = 208

 Score =  285 bits (730), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 126/201 (62%), Positives = 163/201 (81%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
            D E     LVPMV+EQTNRGER+YDIYSRLLKERI+F+ G + D +A+LIC+QLLFLE+
Sbjct: 2   YDFEPKMNALVPMVIEQTNRGERAYDIYSRLLKERIIFLIGGVNDAVASLICSQLLFLES 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP K+I+LYINSPGG V+AG+AIYDTMQ+I+P +ST CMGQAASMGSLLL+AG  G RF
Sbjct: 62  ENPNKDIALYINSPGGYVSAGLAIYDTMQYIRPQVSTVCMGQAASMGSLLLAAGAPGKRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPN+RI++HQPSGG  GQASDIE  AQ+I+K++ RLN+IYVK+ G+  + +E  ++RD 
Sbjct: 122 SLPNSRIMIHQPSGGAQGQASDIEIQAQEILKLRSRLNDIYVKHTGQDLDTIETAMERDK 181

Query: 189 IMSASEACDWGVVDKVLMSRI 209
            MS  EA  +G++D+V+  R 
Sbjct: 182 FMSPEEAKAFGLIDEVVEKRP 202


>gi|325264756|ref|ZP_08131485.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           sp. D5]
 gi|324030048|gb|EGB91334.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           sp. D5]
          Length = 193

 Score =  285 bits (730), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 112/192 (58%), Positives = 154/192 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLLKERI+F+  ++ D  A++I AQLLFLEA++P K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLKERIIFLGEEVNDVSASVIVAQLLFLEADDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VT+G+AIYDTMQ+IK  +ST C+G AASMG+ LLS G+KG RFALPNA I
Sbjct: 61  QLYINSPGGSVTSGLAIYDTMQYIKCDVSTVCIGMAASMGAFLLSGGKKGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I   A+ I+KI+ +LN+I  +N G++ + ++   +RD+ MSA EA
Sbjct: 121 MIHQPSGGAQGQATEIHIVAEHILKIRHKLNQILAENTGQSLDVIKVDTERDNYMSALEA 180

Query: 196 CDWGVVDKVLMS 207
            ++G++D+V+ S
Sbjct: 181 KEYGLIDEVIAS 192


>gi|254673129|emb|CBA07904.1| ATP-dependent Clp protease, proteolytic subunit [Neisseria
           meningitidis alpha275]
          Length = 209

 Score =  285 bits (730), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 122/197 (61%), Positives = 159/197 (80%), Gaps = 2/197 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ+ RGER++DIYSRLLKERIVF+ G + D  A L+ AQLLFLE+ENP K+I  
Sbjct: 12  LVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFF 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM+IYDTM FIKP +ST C+GQAASMG+ LLSAGEKG RFALPN+RI++
Sbjct: 72  YINSPGGSVTAGMSIYDTMNFIKPDVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMI 131

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASDIE HA++++KIK +LN +  K+CG+   ++E+  DRD+ MSA EA
Sbjct: 132 HQPLISGGLGGQASDIEIHARELLKIKEKLNRLMAKHCGRDLADLERDTDRDNFMSAEEA 191

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G++D++L +R  ++
Sbjct: 192 KEYGLIDQILENRASLQ 208


>gi|256556952|gb|ACU83574.1| ATP-dependent Clp protease subunit [uncultured bacterium
           HF130_AEPn_2]
          Length = 211

 Score =  285 bits (730), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 125/193 (64%), Positives = 158/193 (81%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMVVEQ+ RGER+YDIYSRLLKER++F+ G +ED+MA LICAQLLFLEAENP K+I 
Sbjct: 18  GLVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIH 77

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+ LL+AG +G RF LPN+R++
Sbjct: 78  LYINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGAFLLTAGAEGKRFCLPNSRVM 137

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+ I+ RLN +  K+ G T EE+E+  +RD+ MSA  A 
Sbjct: 138 IHQPLGGFQGQASDIEIHAKEILFIRERLNTLMAKHSGHTLEEIERDTNRDNFMSAEAAR 197

Query: 197 DWGVVDKVLMSRI 209
           ++G++D V+  R 
Sbjct: 198 EYGLIDAVIDKRP 210


>gi|149911805|ref|ZP_01900408.1| ATP-dependent Clp protease proteolytic subunit [Moritella sp. PE36]
 gi|149805105|gb|EDM65128.1| ATP-dependent Clp protease proteolytic subunit [Moritella sp. PE36]
          Length = 207

 Score =  285 bits (730), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 126/198 (63%), Positives = 162/198 (81%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
           +E     LVPMVVEQT +GERSYDIYSRLLK+R++F+TGQ+EDHMA L+ AQLLFLE+EN
Sbjct: 9   TESPSNTLVPMVVEQTAKGERSYDIYSRLLKDRVIFLTGQVEDHMANLVVAQLLFLESEN 68

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
           P K+I LYINSPGG V+AGM+IYDTMQFIKP +ST CMG AASMG+ LL+ GEKG R AL
Sbjct: 69  PDKDIFLYINSPGGSVSAGMSIYDTMQFIKPNVSTICMGMAASMGAFLLAGGEKGKRHAL 128

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           PNA+I++HQP GG+ GQASDIE HA +I+K KR+LNEI  ++ G+ Y+ + +  DRD+ M
Sbjct: 129 PNAKIMIHQPLGGYQGQASDIEIHANEIIKTKRKLNEILAEHTGQEYDRLARDTDRDNFM 188

Query: 191 SASEACDWGVVDKVLMSR 208
           +++EA D+G++D V+  R
Sbjct: 189 TSAEAMDYGLIDTVITKR 206


>gi|78223080|ref|YP_384827.1| ATP-dependent Clp protease proteolytic subunit [Geobacter
           metallireducens GS-15]
 gi|90101408|sp|Q39UH2|CLPP_GEOMG RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|78194335|gb|ABB32102.1| ATP-dependent Clp protease proteolytic subunit ClpP [Geobacter
           metallireducens GS-15]
          Length = 199

 Score =  285 bits (730), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 125/192 (65%), Positives = 159/192 (82%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+VVEQT RGERSYDIYSRLLK+RI+F+ G I+DH+A L+ AQLLFLEAE+P K+I L
Sbjct: 2   LVPIVVEQTGRGERSYDIYSRLLKDRIIFLGGPIDDHVANLVIAQLLFLEAEDPDKDIHL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVTAGMAIYDTMQ+IK P+ST C+GQAASMG+LLLS GEKG RF+L ++RI++
Sbjct: 62  YINSPGGVVTAGMAIYDTMQYIKAPVSTICVGQAASMGALLLSGGEKGKRFSLTHSRIMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQA+DI  HAQ+I+K+K+RLNEI  +N G+  E+VE   +RD+ MS  EA  
Sbjct: 122 HQPLGGFQGQATDIHIHAQEILKMKKRLNEIIAENSGQALEKVEADTERDYFMSGEEAKS 181

Query: 198 WGVVDKVLMSRI 209
           +G++D ++  + 
Sbjct: 182 YGIIDAIIARKP 193


>gi|317123029|ref|YP_004103032.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Thermaerobacter marianensis DSM 12885]
 gi|315593009|gb|ADU52305.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Thermaerobacter marianensis DSM 12885]
          Length = 199

 Score =  285 bits (730), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 102/195 (52%), Positives = 147/195 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQTNRGER+YDIYSRLLK+RIVF+   I+D +A  + AQLLFL+ ++P ++I
Sbjct: 1   MNLVPYVIEQTNRGERAYDIYSRLLKDRIVFIGTPIDDVVANSVIAQLLFLQTDDPDRDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGG V +G+AIYDTMQ IKP ++T+C+G AASMG++LL+ G KG R+ALP++RI
Sbjct: 61  SIYINSPGGSVDSGLAIYDTMQHIKPDVATYCVGLAASMGAILLAGGTKGKRYALPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP     G ASD++ +A  ++K+++  NEI  K+ G+  E +E+  +RD  M+A EA
Sbjct: 121 MIHQPHSQVGGTASDVKIYADQLLKLRQVANEILAKHTGQPLERIERDTERDFFMTAEEA 180

Query: 196 CDWGVVDKVLMSRID 210
             +G++D VL  R  
Sbjct: 181 KAYGIIDHVLEPRTK 195


>gi|311695076|gb|ADP97949.1| ATP-dependent Clp protease, proteolytic subunit ClpP [marine
           bacterium HP15]
          Length = 201

 Score =  285 bits (730), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 115/194 (59%), Positives = 152/194 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
            GLVP+V+EQT RGERS+DIYSRLLKER++F+ G +EDHMA LI AQLLFLE+ENP K+I
Sbjct: 5   SGLVPIVIEQTARGERSFDIYSRLLKERVIFMVGPVEDHMANLIVAQLLFLESENPDKDI 64

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGM+IYDTMQFIKP ++T C+GQAASMG+ LL+ G  G R  LPN+R+
Sbjct: 65  HLYINSPGGSVTAGMSIYDTMQFIKPDVATLCVGQAASMGAFLLAGGAAGKRACLPNSRV 124

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG+ GQA+DIE H ++I+KI+  LN I   + G+  E + K  DRD+ M  ++A
Sbjct: 125 MIHQPLGGYQGQATDIEIHTREILKIRHTLNSILAHHTGQDLETIAKDTDRDNFMDPAQA 184

Query: 196 CDWGVVDKVLMSRI 209
            ++G++D +L  R+
Sbjct: 185 KEYGLIDSILDKRV 198


>gi|296134054|ref|YP_003641301.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermincola
           sp. JR]
 gi|296032632|gb|ADG83400.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermincola
           potens JR]
          Length = 194

 Score =  285 bits (730), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 120/194 (61%), Positives = 156/194 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQTNRGER+YDIYSRLLK+RI+F+ G I+D +A L+ AQ+LFLEAE+P K+I
Sbjct: 1   MNLVPIVVEQTNRGERAYDIYSRLLKDRIIFIGGPIDDMVANLVIAQMLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAGMAIYDTMQ+IKP +ST CMGQAASMGS LL+AG KG R+ALP  RI
Sbjct: 61  HIYINSPGGVVTAGMAIYDTMQYIKPDVSTICMGQAASMGSFLLAAGTKGKRYALPYTRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+ HA++I+++K  LNE+  K+ G+  E + +  +RD  MSA EA
Sbjct: 121 MIHQPLGGVQGQATDIDIHAKEILRMKSVLNELLAKHTGQPVEVIARDTERDFFMSAEEA 180

Query: 196 CDWGVVDKVLMSRI 209
             +G+VD+V+  R 
Sbjct: 181 RKYGIVDEVISVRK 194


>gi|154482729|ref|ZP_02025177.1| hypothetical protein EUBVEN_00406 [Eubacterium ventriosum ATCC
           27560]
 gi|149736324|gb|EDM52210.1| hypothetical protein EUBVEN_00406 [Eubacterium ventriosum ATCC
           27560]
          Length = 193

 Score =  285 bits (730), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 112/193 (58%), Positives = 152/193 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQ +RGERSYDIYSRLLK+RI+F+  +I D +A+ + AQLLFLE+E+P K+I
Sbjct: 1   MALVPYVIEQNSRGERSYDIYSRLLKDRIIFLGEEINDAVASTVVAQLLFLESEDPGKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG VTAGMAIYDTM ++K  +ST C+G AASMG+ LLS+G KG R+ALPNA +
Sbjct: 61  HMYINSPGGSVTAGMAIYDTMNYVKCDVSTTCIGMAASMGAFLLSSGAKGKRYALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++I+  A+ I+K K++LN+I   N GK  EEVEK  DRD+ +SA EA
Sbjct: 121 MIHQPLGGAQGQATEIQIAAEHILKTKKKLNQILADNAGKPVEEVEKDTDRDNWLSADEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++D+V+  R
Sbjct: 181 KEYGLIDEVIKDR 193


>gi|109899441|ref|YP_662696.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Pseudoalteromonas atlantica T6c]
 gi|123064308|sp|Q15R46|CLPP_PSEA6 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|109701722|gb|ABG41642.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Pseudoalteromonas atlantica T6c]
          Length = 212

 Score =  285 bits (730), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 126/201 (62%), Positives = 159/201 (79%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
              D    LVPMVVEQT +GERSYDIYSRLLKE ++F+ GQ+EDHMA LI AQ+LFLEAE
Sbjct: 4   TPFDPTNALVPMVVEQTAKGERSYDIYSRLLKENVIFMVGQVEDHMANLIVAQMLFLEAE 63

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP+K+I LYINSPGG VTAGMAIYDTM FIKP +ST C+GQAASMG+ LLS G KG R+ 
Sbjct: 64  NPEKDIFLYINSPGGSVTAGMAIYDTMNFIKPDVSTVCIGQAASMGAFLLSGGAKGKRYC 123

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPNAR+++HQP GGF GQASD E HA++I+ IK ++N +   + G+ Y++V +  DRD+ 
Sbjct: 124 LPNARVMIHQPLGGFQGQASDFEIHAKEILSIKEKMNRLMAAHTGQDYDKVARDTDRDNF 183

Query: 190 MSASEACDWGVVDKVLMSRID 210
           +SA E+ D+G+VD+VL +R D
Sbjct: 184 LSAQESVDYGLVDQVLANRPD 204


>gi|39996891|ref|NP_952842.1| ATP-dependent Clp protease proteolytic subunit [Geobacter
           sulfurreducens PCA]
 gi|60389697|sp|Q74C82|CLPP_GEOSL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|39983779|gb|AAR35169.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacter
           sulfurreducens PCA]
 gi|298505904|gb|ADI84627.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacter
           sulfurreducens KN400]
          Length = 199

 Score =  285 bits (730), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 122/190 (64%), Positives = 159/190 (83%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+VVEQT RGERSYDIYSRLLK+RI+F+ G ++DH+A L+ AQ+LFLEAE+P K+I L
Sbjct: 2   LVPIVVEQTGRGERSYDIYSRLLKDRIIFLGGPVDDHVANLVIAQMLFLEAEDPDKDIHL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+GMAIYDTMQ+IK P+ST C+GQAASMG+LLLS GEKG RF+L ++RI++
Sbjct: 62  YINSPGGVVTSGMAIYDTMQYIKAPVSTICVGQAASMGALLLSGGEKGKRFSLKHSRIMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQA+DI  HAQ+I+K+K+RLNEI  +N G+   +VE   +RD+ MS +EA D
Sbjct: 122 HQPLGGFQGQATDIHIHAQEILKLKKRLNEILAENTGQQLAKVEADTERDYFMSGAEAKD 181

Query: 198 WGVVDKVLMS 207
           +G++D ++  
Sbjct: 182 YGIIDNIIER 191


>gi|149194680|ref|ZP_01871775.1| ATP-dependent Clp protease proteolytic subunit [Caminibacter
           mediatlanticus TB-2]
 gi|149135103|gb|EDM23584.1| ATP-dependent Clp protease proteolytic subunit [Caminibacter
           mediatlanticus TB-2]
          Length = 196

 Score =  285 bits (730), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 120/193 (62%), Positives = 157/193 (81%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P V+E+T RGER+YDIYSRLLK+RI+ + G+I DH A+LI AQLLFLEAENP+K+I L
Sbjct: 4   LIPTVIEKTGRGERAYDIYSRLLKDRIIMLQGEINDHTASLIVAQLLFLEAENPEKDIYL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G AIYDTM +IKP + T CMGQAASMG+ LLS+G KG RFALP+ARI++
Sbjct: 64  YINSPGGVVTSGFAIYDTMNYIKPDVVTICMGQAASMGAFLLSSGAKGKRFALPHARIMI 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE HA++I+++K+ LN+I  +N G++  ++EK  +RD  MSA EA  
Sbjct: 124 HQPLGGAQGQATDIEIHAKEILRMKKELNKILAENTGQSVRKIEKDTERDFFMSAEEAMK 183

Query: 198 WGVVDKVLMSRID 210
           +G++DKVL  R +
Sbjct: 184 YGLIDKVLKKREN 196


>gi|323703643|ref|ZP_08115286.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Desulfotomaculum nigrificans DSM 574]
 gi|323531415|gb|EGB21311.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Desulfotomaculum nigrificans DSM 574]
          Length = 195

 Score =  285 bits (730), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 118/195 (60%), Positives = 156/195 (80%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
              LVP+VVEQTNRGER+YDIYSRLLK+RI+F+ G I+DH+A L+ AQ LFLEAE+P+K+
Sbjct: 1   MSALVPIVVEQTNRGERAYDIYSRLLKDRIIFIGGPIDDHIANLVIAQFLFLEAEDPEKD 60

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I LYINSPGGVVTAG+AIYDTMQ+IKP +ST C+GQAASMGS LL+AG KG R+ALP AR
Sbjct: 61  IHLYINSPGGVVTAGLAIYDTMQYIKPAVSTICLGQAASMGSFLLAAGAKGKRYALPQAR 120

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQP GG  GQA+DI+ HA++I++++  LNE    + G+  E++ +  +RD  MSA E
Sbjct: 121 IMIHQPLGGVQGQATDIDIHAREILRMREILNERLSHHTGQPLEKIARDTERDFFMSAEE 180

Query: 195 ACDWGVVDKVLMSRI 209
           A  +G++D+V+  R 
Sbjct: 181 AKKYGIIDEVMPYRK 195


>gi|283797647|ref|ZP_06346800.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           sp. M62/1]
 gi|291074652|gb|EFE12016.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           sp. M62/1]
 gi|295092868|emb|CBK78975.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           cf. saccharolyticum K10]
 gi|295114657|emb|CBL35504.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [butyrate-producing bacterium SM4/1]
          Length = 193

 Score =  285 bits (730), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 113/193 (58%), Positives = 151/193 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+E T+RGERSYDI+SRLLKERIVF+  ++ D  A+LI AQLLFLE+E+P K+I
Sbjct: 1   MSLVPYVIESTSRGERSYDIFSRLLKERIVFLGEEVTDVSASLIVAQLLFLESEDPNKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMAIYDTM +IK  +ST C+G AASMG+ LL+ G KG R ALPNA +
Sbjct: 61  HLYINSPGGSVTAGMAIYDTMNYIKCDVSTICVGMAASMGAFLLAGGAKGKRLALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I+  A++I++ K++LNEI   N G+ YE +E+  DRD+ M+A EA
Sbjct: 121 MIHQPSGGARGQATEIQIVAENILRTKKKLNEILAANTGQPYEVIERDTDRDNYMTAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D+V+  R
Sbjct: 181 LKYGLIDRVIAGR 193


>gi|163868071|ref|YP_001609275.1| ATP-dependent Clp protease proteolytic subunit [Bartonella
           tribocorum CIP 105476]
 gi|189082448|sp|A9ISA4|CLPP_BART1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|161017722|emb|CAK01280.1| ATP-dependent Clp protease, proteolytic subunit [Bartonella
           tribocorum CIP 105476]
          Length = 210

 Score =  285 bits (730), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 152/207 (73%), Positives = 180/207 (86%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           D     L LVPMV+EQTNRGER+YDI+SRLLKERI+F+ G +ED MA L+CAQLLFLEAE
Sbjct: 3   DPMKTALSLVPMVIEQTNRGERAYDIFSRLLKERIIFINGPVEDGMAMLVCAQLLFLEAE 62

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP+KEISLYINSPGGVVT+GMAIYDTMQFI+PP+ST CMGQAASMGSLLL+AG KG RFA
Sbjct: 63  NPKKEISLYINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGAKGHRFA 122

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPNARI++HQPSGGF GQASDIERHAQDI+K+KRRLNEIYV++ G+ YE +E+TLDRDH 
Sbjct: 123 LPNARIMVHQPSGGFQGQASDIERHAQDIIKMKRRLNEIYVQHTGQGYEVIERTLDRDHF 182

Query: 190 MSASEACDWGVVDKVLMSRIDIEEKSK 216
           M+A EA  +G+VD V+  R + E++ K
Sbjct: 183 MTAEEAKAFGLVDDVIHYRAETEKEEK 209


>gi|225389281|ref|ZP_03759005.1| hypothetical protein CLOSTASPAR_03027 [Clostridium asparagiforme
           DSM 15981]
 gi|225044660|gb|EEG54906.1| hypothetical protein CLOSTASPAR_03027 [Clostridium asparagiforme
           DSM 15981]
          Length = 193

 Score =  285 bits (730), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 116/192 (60%), Positives = 155/192 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLLKERI+F+  ++ D  A+LI AQLLFLEAE+P K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLKERIIFLGEEVNDVSASLIVAQLLFLEAEDPGKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGG VTAGMAIYDTM +IK  +ST C+G AASMG+ LLS G KG RF+LPN++I
Sbjct: 61  NLYINSPGGSVTAGMAIYDTMNYIKSDVSTICIGMAASMGAFLLSGGAKGKRFSLPNSQI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I+  A++I+K KR+LNEI   N GK  E +E+  +RD+ MSA EA
Sbjct: 121 MIHQPSGGAQGQATEIKIVAENILKTKRKLNEILAANTGKPLEVIERDTERDYYMSAEEA 180

Query: 196 CDWGVVDKVLMS 207
            ++G++D+++ +
Sbjct: 181 REYGLIDQIITN 192


>gi|89098789|ref|ZP_01171670.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sp. NRRL
           B-14911]
 gi|89086465|gb|EAR65585.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sp. NRRL
           B-14911]
          Length = 201

 Score =  285 bits (730), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 110/201 (54%), Positives = 157/201 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RI+ +   I+D+++  I AQLLFLEAENP+K+I
Sbjct: 1   MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVSNSIVAQLLFLEAENPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGG +TAGMAIYDTMQ+I+P +ST C+G AASMG+ LL+AGEKG RFALPN+ +
Sbjct: 61  TLYINSPGGSITAGMAIYDTMQYIRPKVSTVCIGMAASMGAFLLAAGEKGKRFALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN+I  +  G+  E + K  DRD+ M+A  A
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILFLREKLNQILSERTGQPLEVIAKDTDRDNFMTAERA 180

Query: 196 CDWGVVDKVLMSRIDIEEKSK 216
            ++G++D+++   +  E+K K
Sbjct: 181 LEYGLIDQIISRNVLEEKKDK 201


>gi|310766842|gb|ADP11792.1| ATP-dependent Clp protease proteolytic subunit clpP [Erwinia sp.
           Ejp617]
          Length = 215

 Score =  285 bits (730), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 132/208 (63%), Positives = 171/208 (82%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  +++     + LVPMVVEQT+RGERSYDIYSRLLKERI+F+TGQ+EDHMA LI 
Sbjct: 9   MSYSG--ERELTAPHMALVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLIV 66

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 67  AQMLFLEAENPEKDIHLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLT 126

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG R+ LPN+R+++HQP GGF GQASDI+ HA++I+K K+ +NE+  K+ G+T E +
Sbjct: 127 AGAKGKRYCLPNSRVMIHQPLGGFQGQASDIDIHAREIIKTKQMMNELMAKHTGQTIETI 186

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SASE+ ++G+VD VL  R
Sbjct: 187 ERDTNRDRFLSASESVEYGLVDSVLSQR 214


>gi|218779308|ref|YP_002430626.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Desulfatibacillum alkenivorans AK-01]
 gi|259585946|sp|B8FA62|CLPP_DESAA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|218760692|gb|ACL03158.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Desulfatibacillum alkenivorans AK-01]
          Length = 201

 Score =  285 bits (730), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 114/198 (57%), Positives = 158/198 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P VVEQT+RGER+YDIYSRLLK+RI+F+  ++ D +A  I AQLLFLE+++P+K+I
Sbjct: 1   MSYIPYVVEQTSRGERTYDIYSRLLKDRIIFLGTEVNDVVANSIIAQLLFLESDDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           + YINSPGG VTAGMAIYDTM +IKP I+T C+GQAASMG++LL+AG  G R++LPNARI
Sbjct: 61  NFYINSPGGSVTAGMAIYDTMAYIKPEITTVCIGQAASMGAVLLAAGNHGKRYSLPNARI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQP GGF GQASDI   AQ+I+++K  LNEI   + GK  ++V++  DRD+ MS  EA
Sbjct: 121 LIHQPMGGFQGQASDIAIQAQEILRMKEALNEILASHTGKPLKQVQQDTDRDYFMSPLEA 180

Query: 196 CDWGVVDKVLMSRIDIEE 213
            ++G++D V+++R D++ 
Sbjct: 181 KEYGLIDHVILNREDLDS 198


>gi|197123826|ref|YP_002135777.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Anaeromyxobacter sp. K]
 gi|226706439|sp|B4UAX9|CLPP_ANASK RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|196173675|gb|ACG74648.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Anaeromyxobacter sp. K]
          Length = 203

 Score =  285 bits (730), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 111/199 (55%), Positives = 157/199 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            +P VVEQT+RGERSYDIYSRLLK+RI+F+   ++D +A +I AQLLFLE+E+P K+I+L
Sbjct: 5   PMPYVVEQTHRGERSYDIYSRLLKDRIIFLGTPVDDDVANVIIAQLLFLESEDPDKDINL 64

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VT+G+AIYDTMQ++KP +ST C+GQAASMG+ LL+ G  G RFA+PNARI++
Sbjct: 65  YINSPGGSVTSGLAIYDTMQYVKPQVSTICLGQAASMGAFLLAGGAAGKRFAVPNARIMI 124

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQ SGGF GQA+DIE  A++ +++K +LNEI  ++  +  E +E+  +RD+ MSA EA +
Sbjct: 125 HQLSGGFQGQATDIEIQAKEALRLKAKLNEIMARHTRQPIERIERDTERDYFMSAGEAKE 184

Query: 198 WGVVDKVLMSRIDIEEKSK 216
           +G++D V + +   E+K +
Sbjct: 185 YGLIDDVFLHKKAAEKKPQ 203


>gi|190150599|ref|YP_001969124.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303252091|ref|ZP_07338260.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307248303|ref|ZP_07530328.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307263943|ref|ZP_07545546.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|226706435|sp|B3H252|CLPP_ACTP7 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|189915730|gb|ACE61982.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302649073|gb|EFL79260.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306855173|gb|EFM87351.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306870705|gb|EFN02446.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 196

 Score =  285 bits (729), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 123/193 (63%), Positives = 157/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQT++GERSYDIYSRLLKERI+F+TGQ+EDHMA LI AQ+LFLEAE+P+K+I
Sbjct: 1   MALVPIVVEQTSKGERSYDIYSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVTAG+AIYDTM FIKP ++T C GQA SMG+ LLS G KG RFALPNAR+
Sbjct: 61  YLYINSPGGVVTAGLAIYDTMNFIKPDVATLCTGQACSMGAFLLSGGAKGKRFALPNARV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+  AQ+I+K+K  L     ++ G+ +E+V    +RD+ MSA EA
Sbjct: 121 MIHQPLGGARGQATDIQIQAQEILKLKEMLTRKMAEHSGQPFEKVAADTERDNFMSAVEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++DKVL  R
Sbjct: 181 MEYGLIDKVLTHR 193


>gi|160936367|ref|ZP_02083736.1| hypothetical protein CLOBOL_01259 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440650|gb|EDP18388.1| hypothetical protein CLOBOL_01259 [Clostridium bolteae ATCC
           BAA-613]
          Length = 193

 Score =  285 bits (729), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 112/192 (58%), Positives = 151/192 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLLKERI+F+  ++ D  A+L+ AQLLFLE+E+P K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLKERIIFLGEEVNDVSASLVVAQLLFLESEDPGKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG V+AG AIYDTM +IK  +ST C+G AASMG+ LLS G KG RFALPNA I
Sbjct: 61  HLYINSPGGSVSAGFAIYDTMNYIKCDVSTICIGMAASMGAFLLSGGAKGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I+  A++I+K +++LNEI   N GK  E +E+  +RD+ MSA EA
Sbjct: 121 MIHQPSGGAKGQATEIKIVAENILKTRKKLNEILAANTGKPLEVIERDTERDNYMSALEA 180

Query: 196 CDWGVVDKVLMS 207
            ++G++D+++  
Sbjct: 181 KEYGLIDEIIAH 192


>gi|312961789|ref|ZP_07776287.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           fluorescens WH6]
 gi|311284048|gb|EFQ62631.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           fluorescens WH6]
          Length = 211

 Score =  285 bits (729), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 124/193 (64%), Positives = 158/193 (81%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMVVEQ+ RGER+YDIYSRLLKER++F+ G +ED+MA LICAQLLFLEAENP K+I 
Sbjct: 18  GLVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIH 77

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+ LL+AG +G R+ LPN+R++
Sbjct: 78  LYINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGAFLLTAGAEGKRYCLPNSRVM 137

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+ I+ RLN +  K+ G T EE+E+  +RD+ MSA  A 
Sbjct: 138 IHQPLGGFQGQASDIEIHAKEILFIRERLNTLMAKHSGHTLEEIERDTNRDNFMSAEAAR 197

Query: 197 DWGVVDKVLMSRI 209
           ++G++D V+  R 
Sbjct: 198 EYGLIDAVIEKRP 210


>gi|319405542|emb|CBI79161.1| ATP-dependent Clp protease, proteolytic subunit [Bartonella sp. AR
           15-3]
          Length = 210

 Score =  285 bits (729), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 148/208 (71%), Positives = 180/208 (86%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D     L LVPMV+EQTNRGER+YDI+SRLLKERI+F+ G +ED+MA L+CAQLLFLEA
Sbjct: 2   RDPTKKVLSLVPMVIEQTNRGERAYDIFSRLLKERIIFINGPVEDNMAMLVCAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI+LYINSPGG+VT+GMAIYDTMQFI+P +ST CMGQAASMGSLLL+AG  G RF
Sbjct: 62  ENPKKEINLYINSPGGMVTSGMAIYDTMQFIRPSVSTLCMGQAASMGSLLLTAGAAGRRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           ALPNARI++HQPSGGF GQASDIERHAQDI+K+KRRLNEIYV++ G+ YE +EKTLDRDH
Sbjct: 122 ALPNARIMVHQPSGGFQGQASDIERHAQDIIKMKRRLNEIYVQHTGQNYEVIEKTLDRDH 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIEEKSK 216
            M+A EA  +G++D V+  R + E++ K
Sbjct: 182 FMTAEEAKQFGLIDDVIQYRAETEKEEK 209


>gi|145628436|ref|ZP_01784237.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae 22.1-21]
 gi|145633845|ref|ZP_01789567.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae 3655]
 gi|145637965|ref|ZP_01793604.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae PittHH]
 gi|145639474|ref|ZP_01795079.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae PittII]
 gi|148826642|ref|YP_001291395.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae PittEE]
 gi|148827882|ref|YP_001292635.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae PittGG]
 gi|229845547|ref|ZP_04465675.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae 6P18H1]
 gi|229847178|ref|ZP_04467282.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae 7P49H1]
 gi|260583375|ref|ZP_05851146.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Haemophilus
           influenzae NT127]
 gi|319775445|ref|YP_004137933.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae F3047]
 gi|166201826|sp|A5UE11|CLPP_HAEIE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166201827|sp|A5UHJ6|CLPP_HAEIG RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|144980211|gb|EDJ89870.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae 22.1-21]
 gi|144985287|gb|EDJ92126.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae 3655]
 gi|145268831|gb|EDK08795.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae PittHH]
 gi|145271521|gb|EDK11433.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae PittII]
 gi|148716802|gb|ABQ99012.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae PittEE]
 gi|148719124|gb|ABR00252.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae PittGG]
 gi|229809854|gb|EEP45576.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae 7P49H1]
 gi|229811563|gb|EEP47264.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae 6P18H1]
 gi|260093580|gb|EEW77497.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Haemophilus
           influenzae NT127]
 gi|309751687|gb|ADO81671.1| ATP-dependent Clp protease proteolytic subunit ClpP [Haemophilus
           influenzae R2866]
 gi|309973789|gb|ADO96990.1| ATP-dependent Clp protease proteolytic subunit ClpP [Haemophilus
           influenzae R2846]
 gi|317450036|emb|CBY86250.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae F3047]
          Length = 193

 Score =  285 bits (729), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 124/193 (64%), Positives = 158/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++PMVVEQT+RGERSYDIYSRLLKER++F++G++ED MA LI AQLLFLE+E+P K+I
Sbjct: 1   MSVIPMVVEQTSRGERSYDIYSRLLKERVIFLSGEVEDRMANLIVAQLLFLESEDPTKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           ++YINSPGG VTAGMAIYDTMQFIKP I T C+GQA SMG+ LL+ G  G R ALPNAR+
Sbjct: 61  NIYINSPGGSVTAGMAIYDTMQFIKPDIRTLCIGQACSMGAFLLAGGTAGKRAALPNARV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQASDI+ HAQ+I+KIK  LN+    + G++ E +EK  DRD+ MSA EA
Sbjct: 121 MIHQPLGGFRGQASDIQIHAQEILKIKHTLNDRLAFHTGQSIERIEKDTDRDNFMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD+VL+ R
Sbjct: 181 QAYGLVDEVLVKR 193


>gi|313668450|ref|YP_004048734.1| endopeptidase [Neisseria lactamica ST-640]
 gi|309379242|emb|CBX22199.1| unnamed protein product [Neisseria lactamica Y92-1009]
 gi|313005912|emb|CBN87368.1| endopeptidase [Neisseria lactamica 020-06]
          Length = 206

 Score =  285 bits (729), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 121/197 (61%), Positives = 157/197 (79%), Gaps = 2/197 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ+ RGER++DIYSRLLKERIVF+ G + D  A L+ AQLLFLE+ENP K+I  
Sbjct: 9   LVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFF 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM+IYDTM FIKP +ST C+GQAASMG+ LLSAG KG RFALPN+RI++
Sbjct: 69  YINSPGGSVTAGMSIYDTMNFIKPDVSTLCLGQAASMGAFLLSAGGKGKRFALPNSRIMI 128

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASDIE HA++++KIK +LN +  K+C +   ++E+  DRD+ MSA EA
Sbjct: 129 HQPLISGGLGGQASDIEIHARELLKIKEKLNRLMAKHCNRDLADLERDTDRDNFMSAEEA 188

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G++D+VL +R  ++
Sbjct: 189 KEYGLIDQVLENRASLQ 205


>gi|262374981|ref|ZP_06068215.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter
           lwoffii SH145]
 gi|262309994|gb|EEY91123.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter
           lwoffii SH145]
          Length = 201

 Score =  285 bits (729), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 125/193 (64%), Positives = 161/193 (83%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQ++RGERS+DIYSRLL+ER++F+TG++ED+MA LI AQ+LFLEAENP K+I 
Sbjct: 9   ALVPMVVEQSSRGERSFDIYSRLLRERVIFMTGEVEDNMANLIVAQMLFLEAENPDKDIH 68

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGMAIYDTMQFIKP + T+CMGQAASMG+ LL+AG KG R+ L NAR++
Sbjct: 69  LYINSPGGSVTAGMAIYDTMQFIKPDVVTYCMGQAASMGAFLLNAGTKGKRYCLENARVM 128

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+ IK RLN +  ++ G+ YE+V +  DRD+ M+A +A 
Sbjct: 129 IHQPLGGFRGQASDIEIHAREILFIKERLNRLMAEHSGQDYEKVARDTDRDNFMTAQQAK 188

Query: 197 DWGVVDKVLMSRI 209
           ++G+VD+VL  R 
Sbjct: 189 EYGLVDEVLTKRP 201


>gi|241204073|ref|YP_002975169.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240857963|gb|ACS55630.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 209

 Score =  285 bits (729), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 160/204 (78%), Positives = 185/204 (90%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           ++  D  + LVPMVVEQTNRGERSYDIYSRLLKERI+F+TG +EDHMATL+CAQLLFLEA
Sbjct: 2   RNPVDTAMALVPMVVEQTNRGERSYDIYSRLLKERIIFLTGTVEDHMATLVCAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI+LYINSPGGVVTAGMAIYDTMQFIKP +ST C+GQAASMGSLLL+AG K MRF
Sbjct: 62  ENPKKEIALYINSPGGVVTAGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLAAGHKDMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           A PN+RI++HQPSGGF GQASDIERHA+DI+K+KRRLNE+YVK+ G+TYEEVEKTLDRDH
Sbjct: 122 ATPNSRIMVHQPSGGFQGQASDIERHARDILKMKRRLNEVYVKHTGRTYEEVEKTLDRDH 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIE 212
            M A EA  WGV+DKVL SR+++E
Sbjct: 182 FMDADEAQSWGVIDKVLTSRLEME 205


>gi|315644534|ref|ZP_07897666.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
           vortex V453]
 gi|315280041|gb|EFU43338.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
           vortex V453]
          Length = 198

 Score =  285 bits (729), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 110/192 (57%), Positives = 149/192 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +PMVVEQ+NRGER+YDIYSRLLK+RI+F+   + D +A  I AQ+LFL AE+P+K+I
Sbjct: 1   MSFIPMVVEQSNRGERAYDIYSRLLKDRIIFLGSDVNDVVANSIIAQMLFLSAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +TAGMAI+DTMQFIKP +ST C+G AASMG+ LL+AG KG R+ LPN+ I
Sbjct: 61  HLYINSPGGSITAGMAIFDTMQFIKPDVSTICVGMAASMGAFLLNAGAKGKRYGLPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DIE  A+ I+K++ +LN I     G+  E +EK  DRD+ M+A EA
Sbjct: 121 MIHQPLGGAQGQATDIEIRARRILKMRDKLNRILSDRTGQPLERIEKDTDRDYFMTADEA 180

Query: 196 CDWGVVDKVLMS 207
            ++G++D+VL +
Sbjct: 181 KEYGLIDQVLEN 192


>gi|313903081|ref|ZP_07836475.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Thermaerobacter subterraneus DSM 13965]
 gi|313466583|gb|EFR62103.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Thermaerobacter subterraneus DSM 13965]
          Length = 199

 Score =  285 bits (729), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 101/195 (51%), Positives = 148/195 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQTNRGER+YDIYSRLLK+RIVF+   I+D +A  + AQLLFL+ ++P ++I
Sbjct: 1   MNLVPYVIEQTNRGERAYDIYSRLLKDRIVFIGTPIDDVVANSVIAQLLFLQTDDPDRDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGG V +G+AIYDTMQ IKP ++T+C+G AASMG++LL+ G KG R+ALP++RI
Sbjct: 61  SIYINSPGGSVDSGLAIYDTMQHIKPDVATYCVGLAASMGAILLAGGTKGKRYALPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP     G A+D++ +A  ++K+++  NEI  K+ G+  E +E+  +RD  M+A EA
Sbjct: 121 MIHQPHSQVGGTAADVKIYADQLLKLRQVANEILAKHTGQPLERIERDTERDFFMTAEEA 180

Query: 196 CDWGVVDKVLMSRID 210
            ++G++D VL  R  
Sbjct: 181 KEYGIIDHVLEPRSK 195


>gi|229591362|ref|YP_002873481.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           fluorescens SBW25]
 gi|259585962|sp|C3JYK0|CLPP_PSEFS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|229363228|emb|CAY50311.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pseudomonas
           fluorescens SBW25]
          Length = 211

 Score =  285 bits (729), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 126/193 (65%), Positives = 158/193 (81%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMVVEQ+ RGER+YDIYSRLLKER++F+ G +ED+MA LICAQLLFLEAENP K+I 
Sbjct: 18  GLVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIH 77

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+ LL+AG +G RF LPN+R++
Sbjct: 78  LYINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGAFLLTAGAEGKRFCLPNSRVM 137

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+ I+ RLN +  K+ G T EE+E+  +RD+ MSA  A 
Sbjct: 138 IHQPLGGFQGQASDIEIHAKEILFIRERLNTLMAKHSGHTLEEIERDTNRDNFMSAEAAR 197

Query: 197 DWGVVDKVLMSRI 209
           D+G++D V+  R 
Sbjct: 198 DYGLIDAVIDKRP 210


>gi|293606140|ref|ZP_06688505.1| ATP-dependent Clp protease proteolytic subunit [Achromobacter
           piechaudii ATCC 43553]
 gi|292815595|gb|EFF74711.1| ATP-dependent Clp protease proteolytic subunit [Achromobacter
           piechaudii ATCC 43553]
          Length = 217

 Score =  285 bits (729), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 117/195 (60%), Positives = 153/195 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG +PMV+EQ+ RGER+YDIYSRLL+ER++F+ G + D  A L+ AQLLFLE+ENP K+I
Sbjct: 22  LGYIPMVIEQSGRGERAYDIYSRLLRERLIFLVGPVNDATANLVVAQLLFLESENPDKDI 81

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG V AGMAI+DTMQFIKP +ST C G AASMG+ LL+AG+KG RF LPN+RI
Sbjct: 82  SLYINSPGGSVYAGMAIFDTMQFIKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRI 141

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQASDI+  A++I+ ++ RLN I   N G++ E +    +RD+ MSA +A
Sbjct: 142 MIHQPSGGAQGQASDIQIQAREILDLRERLNRILADNTGQSMERIGLDTERDNFMSAEDA 201

Query: 196 CDWGVVDKVLMSRID 210
             +G+VDKV+ SR +
Sbjct: 202 VSYGLVDKVMSSRSE 216


>gi|239636619|ref|ZP_04677621.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus warneri L37603]
 gi|239597974|gb|EEQ80469.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus warneri L37603]
          Length = 196

 Score =  285 bits (729), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 104/191 (54%), Positives = 147/191 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+E TNRGER+YDIYSRLLK+RI+ +  QI+D++A  I +QLLFL+A++ +K+I
Sbjct: 1   MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG AIYDT+Q IKP + T C+G AASMGS LL+AG KG R+ALPNA +
Sbjct: 61  YLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRYALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A  I+K + +LN I  +  G++ E++++  DRD+ ++A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAANHILKTREKLNRILAERTGQSIEKIQQDTDRDNFLTAEEA 180

Query: 196 CDWGVVDKVLM 206
             +G+VD+V+ 
Sbjct: 181 KAYGLVDEVME 191


>gi|172039352|ref|YP_001805853.1| ATP-dependent Clp protease proteolytic subunit [Cyanothece sp. ATCC
           51142]
 gi|171700806|gb|ACB53787.1| ATP-dependent Clp protease, proteolytic subunit [Cyanothece sp.
           ATCC 51142]
          Length = 229

 Score =  285 bits (729), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 110/211 (52%), Positives = 154/211 (72%), Gaps = 4/211 (1%)

Query: 6   CAKKDSEDVFL---GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQ 62
            + K   +++     +VPMVVEQ+  GER++DIYSRLL+ERIVF+   ++D +A  I AQ
Sbjct: 11  ISSKRPSEIYATAKNVVPMVVEQSGVGERAFDIYSRLLRERIVFLGTPVDDQVADSIVAQ 70

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           LLFL+AE+P+K+I LYINSPGG V AG+AIYDTMQ I+P + T C G AASMG+ LLS G
Sbjct: 71  LLFLDAEDPEKDIQLYINSPGGSVYAGLAIYDTMQQIRPDVVTICFGLAASMGAFLLSGG 130

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
            KG R ALP++RI++HQP GG  GQA +IE  A++I+ IK+RLN++  ++ G+  E +  
Sbjct: 131 AKGKRMALPSSRIMIHQPLGGAQGQAVEIEIQAKEILYIKKRLNDMLAEHTGQPLETIAA 190

Query: 183 TLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
             +RD  MSA EA D+G++D+V+ SR D+ +
Sbjct: 191 DTERDFFMSAQEAVDYGLIDQVI-SRPDLSD 220


>gi|307544936|ref|YP_003897415.1| ATP-dependent Clp protease proteolytic subunit [Halomonas elongata
           DSM 2581]
 gi|307216960|emb|CBV42230.1| ATP-dependent Clp protease proteolytic subunit [Halomonas elongata
           DSM 2581]
          Length = 206

 Score =  285 bits (729), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 118/193 (61%), Positives = 155/193 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMVVEQ+ RGERSYDIYSRLLKER++F+ G +ED+ A L+ AQLLFLE+ENP K+I 
Sbjct: 12  GLVPMVVEQSARGERSYDIYSRLLKERVIFLVGPVEDYTANLLVAQLLFLESENPDKDIH 71

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQAASMG+LLL+ G  G R+ LPN+R++
Sbjct: 72  LYINSPGGSVTAGMSIYDTMQFIKPDVSTVCIGQAASMGALLLAGGAHGKRYCLPNSRMM 131

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG+ GQASDIE H ++I+ I+ RLN+I   + G+ +E + K  DRD+ M+ ++A 
Sbjct: 132 IHQPLGGYQGQASDIEIHTREILGIRERLNQILAHHTGQKFETIAKDTDRDNFMNGAQAA 191

Query: 197 DWGVVDKVLMSRI 209
           ++G++D VL  R 
Sbjct: 192 EYGLIDAVLDKRP 204


>gi|304413826|ref|ZP_07395243.1| ATP-dependent serine protease [Candidatus Regiella insecticola
           LSR1]
 gi|304283546|gb|EFL91941.1| ATP-dependent serine protease [Candidatus Regiella insecticola
           LSR1]
          Length = 261

 Score =  285 bits (729), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 129/218 (59%), Positives = 173/218 (79%), Gaps = 7/218 (3%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+     +  +   + LVPMVVEQT+RGER+YDIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 39  MSYS----RADQVSTMALVPMVVEQTSRGERAYDIYSRLLKERVIFLTGQVEDHMANLIV 94

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP K+ISLYINSPGGV+TAGM+IYDTMQFIKP + T C+GQA SMG+ LL+
Sbjct: 95  AQMLFLEAENPDKDISLYINSPGGVITAGMSIYDTMQFIKPDVITLCIGQACSMGAFLLT 154

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQ SDIE H+++I  +K R+N +  K+ GK  EE+
Sbjct: 155 AGTKGKRFCLPNSRVMIHQPLGGYQGQVSDIEIHSKEIRNVKNRMNTLMAKHTGKALEEI 214

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR---IDIEEKS 215
           EK  +RD+ +SA E+ ++G+VD+VL +R    +++EK+
Sbjct: 215 EKDTERDYFLSAEESVNYGLVDQVLCTRETVSNLDEKA 252


>gi|283479306|emb|CAY75222.1| ATP-dependent Clp protease proteolytic subunit clpP [Erwinia
           pyrifoliae DSM 12163]
          Length = 218

 Score =  285 bits (729), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 132/208 (63%), Positives = 171/208 (82%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  +++     + LVPMVVEQT+RGERSYDIYSRLLKERI+F+TGQ+EDHMA LI 
Sbjct: 12  MSYSG--ERELTAPHMALVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLIV 69

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 70  AQMLFLEAENPEKDIHLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLT 129

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG R+ LPN+R+++HQP GGF GQASDI+ HA++I+K K+ +NE+  K+ G+T E +
Sbjct: 130 AGAKGKRYCLPNSRVMIHQPLGGFQGQASDIDIHAREIIKTKQMMNELMAKHTGQTIETI 189

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           E+  +RD  +SASE+ ++G+VD VL  R
Sbjct: 190 ERDTNRDRFLSASESVEYGLVDSVLSQR 217


>gi|73663232|ref|YP_302013.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|124013830|sp|Q49VZ2|CLPP_STAS1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|72495747|dbj|BAE19068.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 194

 Score =  285 bits (729), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 108/190 (56%), Positives = 149/190 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+E TNRGER+YDIYSRLLK+RI+ +  QI+D++A  I +QLLFL+A++ +K+I
Sbjct: 1   MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDAEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG AIYDT+Q IKP + T C+G AASMGS LL+AG KG RFALPNA +
Sbjct: 61  YLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A  I+K + +LN+I  +  G++ E++E+  DRD+ +SA EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAANHILKTRAKLNQILAERTGQSIEKIEQDTDRDNFLSAEEA 180

Query: 196 CDWGVVDKVL 205
            D+G+VD+V+
Sbjct: 181 KDYGLVDQVM 190


>gi|152995749|ref|YP_001340584.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Marinomonas
           sp. MWYL1]
 gi|254763795|sp|A6VW20|CLPP_MARMS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|150836673|gb|ABR70649.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Marinomonas
           sp. MWYL1]
          Length = 210

 Score =  285 bits (729), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 123/193 (63%), Positives = 156/193 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+EQT RGERS+DIYSRLLKER++F+ GQ+EDHMA L+ AQLLFLE+ENP K+I 
Sbjct: 17  GLVPMVIEQTARGERSFDIYSRLLKERVIFLVGQVEDHMANLVVAQLLFLESENPDKDIH 76

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQAASMG+LLL+AG  G R+ LPN+R++
Sbjct: 77  LYINSPGGSVTAGMSIYDTMQFIKPDVSTMCIGQAASMGALLLTAGAAGKRYCLPNSRVM 136

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG+ GQASDIE H ++I+ IK +LNEI   + GK  E+V    DRD+ M+   A 
Sbjct: 137 IHQPLGGYQGQASDIEIHTREILSIKHKLNEIISFHTGKPIEQVALDTDRDNFMNPQTAK 196

Query: 197 DWGVVDKVLMSRI 209
           D+G++D++L  R 
Sbjct: 197 DYGLIDEILQKRT 209


>gi|242373003|ref|ZP_04818577.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           epidermidis M23864:W1]
 gi|242349329|gb|EES40930.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           epidermidis M23864:W1]
          Length = 195

 Score =  285 bits (729), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 104/191 (54%), Positives = 147/191 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+E TNRGER+YDIYSRLLK+RI+ +  QI+D++A  I +QLLFL+A++ +K+I
Sbjct: 1   MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG AIYDT+Q IKP + T C+G AASMGS LL+AG KG RFALPNA +
Sbjct: 61  YLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A  I+K + +LN I  +  G++ E++++  DRD+ ++A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAANHILKTREKLNRILAERTGQSIEKIQQDTDRDNFLTAEEA 180

Query: 196 CDWGVVDKVLM 206
             +G++D+V+ 
Sbjct: 181 KSYGLIDEVME 191


>gi|330808572|ref|YP_004353034.1| endopeptidase Clp (ATP-dependent Clp protease proteolytic subunit
           ClpP) [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327376680|gb|AEA68030.1| endopeptidase Clp (ATP-dependent Clp protease proteolytic subunit
           ClpP) [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 211

 Score =  284 bits (728), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 123/193 (63%), Positives = 159/193 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+EQ+ RGER+YDIYSRLLKER++F+ G +ED+MA LICAQLLFLEAENP K+I 
Sbjct: 18  GLVPMVIEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIH 77

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+ LL+AG  G R+ LPN+R++
Sbjct: 78  LYINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGAFLLTAGAHGKRYCLPNSRVM 137

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+ I+ RLN +  K+ G+T EE+E+  +RD+ MSA  A 
Sbjct: 138 IHQPLGGFQGQASDIEIHAKEILFIRERLNTLMAKHSGRTLEEIERDTNRDNFMSAEAAR 197

Query: 197 DWGVVDKVLMSRI 209
           ++G++D+V+  R 
Sbjct: 198 EYGLIDEVINQRP 210


>gi|242279532|ref|YP_002991661.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
           salexigens DSM 2638]
 gi|242122426|gb|ACS80122.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
           salexigens DSM 2638]
          Length = 202

 Score =  284 bits (728), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 123/201 (61%), Positives = 167/201 (83%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
             G +P+VVE T R ER+YDIYSRLLK+RI+ ++G++ DH+A++ICAQLLFLE+E+P+KE
Sbjct: 1   MSGTIPIVVETTGRTERAYDIYSRLLKDRIILLSGEVNDHVASVICAQLLFLESEDPEKE 60

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I +YINSPGGVVTAGMAIYDTMQ+I  P++T CMGQAASMG+ LLSAGEKG R++LP++R
Sbjct: 61  IYMYINSPGGVVTAGMAIYDTMQYISAPVATLCMGQAASMGAFLLSAGEKGQRYSLPHSR 120

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           IL+HQP GG  GQA+DI+  A++I+++++ LN I  +N G+T EE+EK  DRD+ MSA E
Sbjct: 121 ILIHQPLGGAQGQATDIDIQAREILRLRKSLNSIMAENTGRTVEEIEKDTDRDNFMSAQE 180

Query: 195 ACDWGVVDKVLMSRIDIEEKS 215
           A ++G++DKVL +R +IE K 
Sbjct: 181 AVEYGLIDKVLENRGNIESKE 201


>gi|88810607|ref|ZP_01125864.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nitrococcus
           mobilis Nb-231]
 gi|88792237|gb|EAR23347.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nitrococcus
           mobilis Nb-231]
          Length = 214

 Score =  284 bits (728), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 118/208 (56%), Positives = 159/208 (76%)

Query: 4   EGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQL 63
              + +  E +  GLVPMVVEQT RGER+YDIYSRLLKER++F+ G +EDH A L+ AQL
Sbjct: 2   STSSDRRHEPMATGLVPMVVEQTARGERAYDIYSRLLKERVIFLVGPVEDHQANLLIAQL 61

Query: 64  LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           LFLE+ENP K+I LYINSPGGVV+AG+AIYDTMQF+KP +ST C+GQAASMG+LLL+ G 
Sbjct: 62  LFLESENPDKDIHLYINSPGGVVSAGLAIYDTMQFVKPDVSTVCLGQAASMGALLLTGGA 121

Query: 124 KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
            G R+ LPN+RI++HQP GGF GQA+D+E HA++I+ ++ RLN+I  ++ G+  E +++ 
Sbjct: 122 AGKRYCLPNSRIMIHQPLGGFQGQATDVEIHAREILAMRERLNQILAQHTGQDIETIQQD 181

Query: 184 LDRDHIMSASEACDWGVVDKVLMSRIDI 211
            +RD+ M    A  +G+VD VL  R  +
Sbjct: 182 TERDNFMGPEAAQSYGIVDGVLRDRGKL 209


>gi|253701609|ref|YP_003022798.1| ATP-dependent Clp protease proteolytic subunit [Geobacter sp. M21]
 gi|259585955|sp|C6E2T0|CLPP_GEOSM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|251776459|gb|ACT19040.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacter sp.
           M21]
          Length = 199

 Score =  284 bits (728), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 115/192 (59%), Positives = 156/192 (81%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+VVEQT RGERSYDIYSRLLK+RI+F+ G I+D++A L+ AQLLFLEAE+P K+I L
Sbjct: 2   LVPIVVEQTGRGERSYDIYSRLLKDRIIFLGGGIDDNVANLVIAQLLFLEAEDPDKDIHL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVTAGMAIYDTM++IK P+ST C+GQAASMG+ LLS GEKG R++L N+RI++
Sbjct: 62  YINSPGGVVTAGMAIYDTMRYIKAPVSTICVGQAASMGAFLLSGGEKGKRYSLVNSRIMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQA+DI  HA++I+++K  LN +  ++ G++ E+V    +RD+ MS  EA +
Sbjct: 122 HQPLGGFQGQATDIHIHAKEILRMKDELNALLAEHTGQSVEKVAADTERDYFMSGEEAKN 181

Query: 198 WGVVDKVLMSRI 209
           +G++D ++   +
Sbjct: 182 YGIIDAIVTRNV 193


>gi|169824905|ref|YP_001692516.1| ATP-dependent protease Clp proteolytic subunit [Finegoldia magna
           ATCC 29328]
 gi|297587291|ref|ZP_06945936.1| ATP-dependent Clp protease proteolytic subunit [Finegoldia magna
           ATCC 53516]
 gi|302379561|ref|ZP_07268046.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Finegoldia
           magna ACS-171-V-Col3]
 gi|303234189|ref|ZP_07320835.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Finegoldia
           magna BVS033A4]
 gi|167831710|dbj|BAG08626.1| ATP-dependent protease Clp proteolytic subunit [Finegoldia magna
           ATCC 29328]
 gi|297575272|gb|EFH93991.1| ATP-dependent Clp protease proteolytic subunit [Finegoldia magna
           ATCC 53516]
 gi|302312468|gb|EFK94464.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Finegoldia
           magna ACS-171-V-Col3]
 gi|302494730|gb|EFL54490.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Finegoldia
           magna BVS033A4]
          Length = 195

 Score =  284 bits (728), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 117/191 (61%), Positives = 158/191 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQ+NRGERSYDI+SRLLKERI+FVTG++ D MA L+ AQLLFLE+E+P+K+I 
Sbjct: 3   SLVPMVVEQSNRGERSYDIFSRLLKERIIFVTGEVNDQMADLVIAQLLFLESEDPKKDIQ 62

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG V+AG+AIYDTMQ++KP +ST C+G AASMG++LL++G KG R+ALPNA  L
Sbjct: 63  LYINSPGGSVSAGLAIYDTMQYVKPDVSTICVGMAASMGAILLTSGAKGKRYALPNADTL 122

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQASDIE HA++I+K +  LN+I  +  G+  E++E+  DRD I++A EA 
Sbjct: 123 IHQPLGGAQGQASDIEIHAKNILKKRELLNKILSERTGQPLEKIERDTDRDFILTAEEAK 182

Query: 197 DWGVVDKVLMS 207
           ++G++D+V+ +
Sbjct: 183 EYGLIDEVIYT 193


>gi|310657900|ref|YP_003935621.1| clpa-clpp and clpx-clpp ATP-dependent serine protease proteolytic
           subunit [Clostridium sticklandii DSM 519]
 gi|308824678|emb|CBH20716.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Clostridium sticklandii]
          Length = 194

 Score =  284 bits (728), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 113/194 (58%), Positives = 154/194 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP+V+EQT RGERSYDIYSRLLK+RI+F+  Q+ DH A+LI AQLL LE+E+P K+I
Sbjct: 1   MAYVPIVIEQTGRGERSYDIYSRLLKDRIIFLGDQVNDHTASLIVAQLLHLESEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +TAGMAIYDTMQ+IKP ++T C+G AASMG+ LL+AG KG RFALPN+ I
Sbjct: 61  FLYINSPGGSITAGMAIYDTMQYIKPDVATICVGMAASMGAFLLTAGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+ HA+ I++++ +LNEI     G+  E++E+  +RD  MS++EA
Sbjct: 121 MIHQPLGGTQGQATDIKIHAERIIRMRNKLNEIMADRSGQPLEKIERDTERDFFMSSTEA 180

Query: 196 CDWGVVDKVLMSRI 209
            ++G++D+VL  R 
Sbjct: 181 KEYGLIDEVLEKRP 194


>gi|197117660|ref|YP_002138087.1| ATP-dependent Clp protease proteolytic subunit [Geobacter
           bemidjiensis Bem]
 gi|226706452|sp|B5EI27|CLPP_GEOBB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|197087020|gb|ACH38291.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacter
           bemidjiensis Bem]
          Length = 199

 Score =  284 bits (728), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 115/192 (59%), Positives = 157/192 (81%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+VVEQT RGERSYDIYSRLLK+RI+F+ G I+D++A L+ AQLLFLEAE+P K+I L
Sbjct: 2   LVPIVVEQTGRGERSYDIYSRLLKDRIIFLGGGIDDNVANLVIAQLLFLEAEDPDKDIHL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVTAGMAIYDTM++IK P+ST C+GQAASMG+ LLS GEKG R++L N+RI++
Sbjct: 62  YINSPGGVVTAGMAIYDTMRYIKAPVSTICVGQAASMGAFLLSGGEKGKRYSLVNSRIMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQA+DI  HA++I+++K +LN +  ++ G++ E+V    +RD+ MS  EA +
Sbjct: 122 HQPLGGFQGQATDIHIHAKEILRMKDQLNALLAEHTGQSVEKVAADTERDYFMSGEEAKN 181

Query: 198 WGVVDKVLMSRI 209
           +G++D ++   +
Sbjct: 182 YGIIDAIVTRNV 193


>gi|56416580|ref|YP_153654.1| ATP-dependent Clp protease proteolytic subunit [Anaplasma marginale
           str. St. Maries]
 gi|222474947|ref|YP_002563362.1| ATP-dependent clp protease proteolytic subunit (clpP) [Anaplasma
           marginale str. Florida]
 gi|67460191|sp|Q5PBD0|CLPP_ANAMM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|254763783|sp|B9KHZ4|CLPP_ANAMF RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|56387812|gb|AAV86399.1| ATP-dependent clp protease proteolytic subunit [Anaplasma marginale
           str. St. Maries]
 gi|222419083|gb|ACM49106.1| ATP-dependent clp protease proteolytic subunit (clpP) [Anaplasma
           marginale str. Florida]
          Length = 215

 Score =  284 bits (728), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 138/197 (70%), Positives = 176/197 (89%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E   + LVPMVVEQT+RGER+YDIYSRLLKERI+F+TG +ED+MA+LI AQL+FLEAENP
Sbjct: 14  EREIMNLVPMVVEQTSRGERAYDIYSRLLKERIIFITGTVEDNMASLIVAQLVFLEAENP 73

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+ISLYINSPGGVVTAG++IYDTMQ+IKP +ST C+GQAASMG+LLL+ GE GMR+ALP
Sbjct: 74  EKDISLYINSPGGVVTAGLSIYDTMQYIKPKVSTLCLGQAASMGALLLAGGEPGMRYALP 133

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+RI++HQPSGGF GQA+DIE HA++I++IKRRLNEIYVK+ GK+ EE+E +++RD+ M 
Sbjct: 134 NSRIMVHQPSGGFRGQATDIEIHAREILEIKRRLNEIYVKHTGKSLEEIESSMERDNFMV 193

Query: 192 ASEACDWGVVDKVLMSR 208
           A +A D+G+VDKV+  R
Sbjct: 194 AEKAKDFGIVDKVIDKR 210


>gi|239623656|ref|ZP_04666687.1| ATP-dependent Clp protease [Clostridiales bacterium 1_7_47_FAA]
 gi|239521687|gb|EEQ61553.1| ATP-dependent Clp protease [Clostridiales bacterium 1_7_47FAA]
          Length = 193

 Score =  284 bits (728), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 108/192 (56%), Positives = 151/192 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLLKERI+F+  ++ D  A+L+ AQLLFLE+E+P K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLKERIIFLGEEVNDVSASLVVAQLLFLESEDPGKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG V+AG AIYDTM +IK  +ST C+G AASMG+ LL+ G KG RFALPN+ I
Sbjct: 61  HLYINSPGGSVSAGFAIYDTMNYIKCDVSTICIGMAASMGAFLLAGGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I+  A++I+K +++LN+I   N G+  E +E+  +RD+ MSA EA
Sbjct: 121 MIHQPSGGAKGQATEIKIVAENILKTRKKLNDILAANTGRPIEVIERDTERDNYMSAEEA 180

Query: 196 CDWGVVDKVLMS 207
            ++G++D+++  
Sbjct: 181 KEYGLIDEIIAH 192


>gi|77919287|ref|YP_357102.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pelobacter
           carbinolicus DSM 2380]
 gi|90183182|sp|Q3A3X5|CLPP_PELCD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|77545370|gb|ABA88932.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pelobacter
           carbinolicus DSM 2380]
          Length = 194

 Score =  284 bits (728), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 112/194 (57%), Positives = 157/194 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+PMVVEQT RGER+YDI+SRLLK+RI+F+ G ++D +A LI AQ+LFLE+E+P+KEI
Sbjct: 1   MSLIPMVVEQTGRGERAYDIFSRLLKDRIIFLGGAVDDQVANLIIAQMLFLESEDPEKEI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVTAGMAIYDTMQ+++ P+ST C+GQAASMG++LL+AG +G RFALP+ARI
Sbjct: 61  FLYINSPGGVVTAGMAIYDTMQYVRCPVSTLCVGQAASMGAVLLAAGGEGKRFALPHARI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DI  HAQ+I++++  LN +   + G+T E++    +RD  M + EA
Sbjct: 121 MIHQPWGGFQGQATDINIHAQEILRLRETLNGVLASHTGQTLEKIATDTERDFFMGSEEA 180

Query: 196 CDWGVVDKVLMSRI 209
             +G+VD ++  ++
Sbjct: 181 KKYGIVDDIVKRKV 194


>gi|16332068|ref|NP_442796.1| ATP-dependent Clp protease proteolytic subunit [Synechocystis sp.
           PCC 6803]
 gi|2493737|sp|Q59993|CLPP2_SYNY3 RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|1001377|dbj|BAA10867.1| ATP-dependent Clp protease proteolytic subunit [Synechocystis sp.
           PCC 6803]
          Length = 226

 Score =  284 bits (728), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 107/211 (50%), Positives = 153/211 (72%), Gaps = 1/211 (0%)

Query: 3   FEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQ 62
           +         +    +VPMVVEQ+  GER++DIYSRLL+ERI+F+   ++D +A  I AQ
Sbjct: 8   YRSPLSTLGGNNIQSVVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPVDDQVADSIVAQ 67

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           LLFL+AE+P+K+I LYINSPGG V AG+AIYDTMQ I+P + T C G AASMG+ LLS G
Sbjct: 68  LLFLDAEDPEKDIQLYINSPGGSVYAGLAIYDTMQQIRPDVVTICFGLAASMGAFLLSGG 127

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
            KG R ALP++RI++HQP GG  GQA +IE  A++I+ IK RLN + V++ G+  E++++
Sbjct: 128 CKGKRMALPSSRIMIHQPLGGAQGQAVEIEIQAREILYIKDRLNTMLVEHTGQPMEKLQE 187

Query: 183 TLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
             +RD  MSA EA ++G++D+V+ SR ++ +
Sbjct: 188 DTERDFFMSAEEAKEYGLIDQVI-SRPNLPD 217


>gi|285017388|ref|YP_003375099.1| ATP-dependent clp protease proteolytic subunit protein [Xanthomonas
           albilineans GPE PC73]
 gi|283472606|emb|CBA15111.1| probable atp-dependent clp protease proteolytic subunit protein
           [Xanthomonas albilineans]
          Length = 208

 Score =  284 bits (728), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 124/201 (61%), Positives = 166/201 (82%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           D+    L LVPMVVEQT+RGER+YDIYSRLLKER++F+ G I+DHMA ++ AQLLFLEA+
Sbjct: 2   DNVTKALNLVPMVVEQTSRGERAYDIYSRLLKERLIFLVGPIDDHMANVVVAQLLFLEAD 61

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP+K+ISLYINSPGGVVTAGMAIYDTMQ+IKP +ST C+GQAASMG+LLL++G  G R+A
Sbjct: 62  NPEKDISLYINSPGGVVTAGMAIYDTMQYIKPDVSTICVGQAASMGALLLASGAAGKRYA 121

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPN+R+++HQP GGF GQA+DI+ HA++I+ ++ RLNE+  K+ G++ E + +  +RD+ 
Sbjct: 122 LPNSRVMIHQPLGGFQGQATDIDIHAREILTLRARLNEVLAKHTGQSLETIARDTERDNF 181

Query: 190 MSASEACDWGVVDKVLMSRID 210
            SA +A  +G+VD+VL  R D
Sbjct: 182 KSAIDAQAYGLVDQVLERRPD 202


>gi|313906306|ref|ZP_07839649.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Eubacterium
           cellulosolvens 6]
 gi|313468862|gb|EFR64221.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Eubacterium
           cellulosolvens 6]
          Length = 193

 Score =  284 bits (728), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 114/193 (59%), Positives = 151/193 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT RGERSYDIYSRLLK+RI+F+  ++ D  A L+ AQLLFLE+E+P K+I
Sbjct: 1   MPLIPYVIEQTGRGERSYDIYSRLLKDRIIFLGEEVNDVSANLVVAQLLFLESEDPSKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMAIYDTMQ+IK  +ST C+G AASMG+ LL+ G KG R ALPNA I
Sbjct: 61  HLYINSPGGSVTAGMAIYDTMQYIKCDVSTICLGLAASMGAFLLAGGTKGKRLALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  G+ASDIE  A+ I+KIK+R+N I  +N G+TYE+V+   + D+ ++A EA
Sbjct: 121 MIHQPSGGAQGKASDIEIVAEQILKIKKRMNTILAENTGQTYEKVKADTELDNYLTAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D V+ +R
Sbjct: 181 KAYGIIDSVITNR 193


>gi|89070383|ref|ZP_01157690.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Oceanicola
           granulosus HTCC2516]
 gi|89044030|gb|EAR50205.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Oceanicola
           granulosus HTCC2516]
          Length = 209

 Score =  284 bits (728), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 130/200 (65%), Positives = 171/200 (85%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           D  + ++ LVPMVVEQT+RGER+YDI+SRLLKERI+F+ G + D MA+LI AQL+ LEAE
Sbjct: 3   DPIETYMNLVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMASLIVAQLIHLEAE 62

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP+KEIS+YINSPGGVVT+G++IYDTMQ+IKPP+ST  +GQAASMGSLLL+ GEKGMR +
Sbjct: 63  NPKKEISMYINSPGGVVTSGLSIYDTMQYIKPPVSTLVIGQAASMGSLLLAGGEKGMRLS 122

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPN+RI++HQPSGG+ GQA+DI  HA++ +K+KRRLNEIYVK+ G+T ++VE  L+RD+ 
Sbjct: 123 LPNSRIMVHQPSGGYQGQATDIMIHAEETLKLKRRLNEIYVKHTGQTLKKVEAALERDNF 182

Query: 190 MSASEACDWGVVDKVLMSRI 209
           MS  EA DWG++D++  +R 
Sbjct: 183 MSPEEAKDWGLIDEIFENRA 202


>gi|319891770|ref|YP_004148645.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317161466|gb|ADV05009.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 195

 Score =  284 bits (728), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 105/194 (54%), Positives = 148/194 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+E TNRGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL+A++ +K+I
Sbjct: 1   MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLQAQDAEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG AIYDT+Q IKP + T C+G AASMGS LL+AG KG RFALPNA +
Sbjct: 61  YLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I++ + RLN+I  +  G+  E++EK  DRD+ ++A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKHILRTRERLNKILSELTGQPIEKIEKDTDRDNFLTAQEA 180

Query: 196 CDWGVVDKVLMSRI 209
            ++G++D+V+    
Sbjct: 181 KEYGLIDEVMEPEK 194


>gi|289523086|ref|ZP_06439940.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503629|gb|EFD24793.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 194

 Score =  284 bits (728), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 119/191 (62%), Positives = 153/191 (80%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+V+EQT RGER+YDIYSRLLK+RI+F+   IE+H+A L+ AQ+LFLE+E+P K+I+L
Sbjct: 4   LVPIVIEQTGRGERAYDIYSRLLKDRIIFLGDVIEEHLANLVVAQMLFLESEDPDKDINL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+ IYDTMQ+IK P+ST C+GQAASM ++LL+AG KG R ALPN+R++L
Sbjct: 64  YINSPGGSVTAGLGIYDTMQYIKCPVSTICVGQAASMAAVLLAAGAKGKRIALPNSRVML 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE HA++I KI+ RLNEI   +  +  E+V K  DRD  MSA EA  
Sbjct: 124 HQPLGGVQGQATDIEIHAKEIKKIRDRLNEIIAYHTNQDIEKVAKDTDRDFFMSAEEALA 183

Query: 198 WGVVDKVLMSR 208
           +G+VDKV+  R
Sbjct: 184 YGIVDKVIEKR 194


>gi|67923459|ref|ZP_00516936.1| Peptidase S14, ClpP [Crocosphaera watsonii WH 8501]
 gi|67854694|gb|EAM49976.1| Peptidase S14, ClpP [Crocosphaera watsonii WH 8501]
          Length = 262

 Score =  284 bits (728), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 110/211 (52%), Positives = 155/211 (73%), Gaps = 4/211 (1%)

Query: 6   CAKKDSEDVFL---GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQ 62
            + K   +++     +VPMVVEQ+  GER++DIYSRLL+ERIVF+   ++D +A  I AQ
Sbjct: 44  ISSKRPSEIYAAPESVVPMVVEQSGVGERAFDIYSRLLRERIVFLGTPVDDQVADSIVAQ 103

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           LLFL+AE+P+K+I LYINSPGG V AG+AIYDTMQ I+P + T C G AASMG+ LLS G
Sbjct: 104 LLFLDAEDPEKDIQLYINSPGGSVYAGLAIYDTMQQIRPDVVTICFGLAASMGAFLLSGG 163

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
            KG R ALP++RI++HQP GG  GQA +IE  A++I+ IK+RLN++  ++ G+ ++ +  
Sbjct: 164 TKGKRMALPSSRIMIHQPLGGAQGQAVEIEIQAKEILYIKKRLNDMLAEHTGQPFDTIAA 223

Query: 183 TLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
             +RD  MSA EA D+G++DKV+ SR D+ +
Sbjct: 224 DTERDFFMSAQEAVDYGLIDKVI-SRSDLSD 253


>gi|22298052|ref|NP_681299.1| ATP-dependent Clp protease proteolytic subunit 1
           [Thermosynechococcus elongatus BP-1]
 gi|34222557|sp|Q8DLI2|CLPP1_THEEB RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|22294230|dbj|BAC08061.1| ATP-dependent Clp protease proteolytic subunit 1
           [Thermosynechococcus elongatus BP-1]
          Length = 229

 Score =  284 bits (728), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 111/202 (54%), Positives = 145/202 (71%), Gaps = 6/202 (2%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQ------IEDHMATLICAQLLF 65
                 +VPMVVEQ+ RGER++DIYSRLL+ERI+F+ G       I+D +A  I AQLLF
Sbjct: 22  PPTHANIVPMVVEQSGRGERAFDIYSRLLRERIIFLGGGAGDRRGIDDAVADSIVAQLLF 81

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L+AE+P+K+I LYINSPGG VTAGMAIYDTM+ I+P + T C G AASMG+ LLS G  G
Sbjct: 82  LDAEDPEKDIYLYINSPGGSVTAGMAIYDTMKHIRPDVCTLCFGLAASMGAFLLSGGTPG 141

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
            R ALPNARI++HQP GG  GQA DIE  A++I+  KR+LNE+  ++ G+  E +E   +
Sbjct: 142 KRMALPNARIMIHQPLGGAQGQAVDIEIQAREILYHKRKLNELLSQHTGQPIERIEADTE 201

Query: 186 RDHIMSASEACDWGVVDKVLMS 207
           RD  MSA EA  +G++D+V+  
Sbjct: 202 RDFFMSAEEAKAYGLIDQVVTR 223


>gi|161501794|ref|YP_767292.2| ATP-dependent Clp protease proteolytic subunit [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 209

 Score =  284 bits (728), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 160/204 (78%), Positives = 185/204 (90%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           ++  D  + LVPMVVEQTNRGERSYDIYSRLLKERI+F+TG +EDHMATL+CAQLLFLEA
Sbjct: 2   RNPVDTAMALVPMVVEQTNRGERSYDIYSRLLKERIIFLTGAVEDHMATLVCAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI+LYINSPGGVVTAGMAIYDTMQFIKP +ST C+GQAASMGSLLL+AG K MRF
Sbjct: 62  ENPKKEIALYINSPGGVVTAGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLAAGHKDMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           A PN+RI++HQPSGGF GQASDIERHA+DI+K+KRRLNE+YVK+ G+TYEEVEKTLDRDH
Sbjct: 122 ATPNSRIMVHQPSGGFQGQASDIERHARDILKMKRRLNEVYVKHTGRTYEEVEKTLDRDH 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIE 212
            M A EA  WGV+DKVL SR+++E
Sbjct: 182 FMDADEAQSWGVIDKVLTSRLEME 205


>gi|195952528|ref|YP_002120818.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Hydrogenobaculum sp. Y04AAS1]
 gi|195932140|gb|ACG56840.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 205

 Score =  284 bits (728), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 122/204 (59%), Positives = 159/204 (77%)

Query: 6   CAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF 65
              KD + +   LVP+VVEQT RGER+YDIYSRLL++RIV +   I+DH+A LI AQLLF
Sbjct: 2   SNPKDYQKIIDQLVPIVVEQTPRGERAYDIYSRLLQDRIVILGFPIDDHVANLIVAQLLF 61

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           LEA++P+K+I +YINSPGG VTAG+AIYDTMQ+IKP ++T C+GQAASMG++LL+AG KG
Sbjct: 62  LEAQDPEKDIQMYINSPGGSVTAGLAIYDTMQYIKPDVTTICIGQAASMGAVLLAAGTKG 121

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
            RFALPNARI++HQP GG  GQA+DI  HA++I +IK  LN I     GK   ++EK +D
Sbjct: 122 KRFALPNARIMIHQPLGGVQGQATDILIHAEEIKRIKHILNTILANATGKNLRQIEKDVD 181

Query: 186 RDHIMSASEACDWGVVDKVLMSRI 209
           RD+ MSA EA ++G++DKV+  R 
Sbjct: 182 RDYFMSAEEAKNYGLIDKVITKRA 205


>gi|108762291|ref|YP_630243.1| ATP-dependent Clp protease proteolytic subunit [Myxococcus xanthus
           DK 1622]
 gi|116270726|sp|Q1DAT0|CLPP1_MYXXD RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|108466171|gb|ABF91356.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Myxococcus
           xanthus DK 1622]
          Length = 206

 Score =  284 bits (728), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 116/195 (59%), Positives = 157/195 (80%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
               VP V+EQT+RGERSYDIYSRLLK+RIV +  +I+D +A +I AQLLFLE+E+P K+
Sbjct: 2   PFMPVPYVIEQTHRGERSYDIYSRLLKDRIVMLGTEIDDDVANVIVAQLLFLESEDPDKD 61

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I+LYINSPGG VTAG+AIYDTMQ++K P+ST C+GQAASMG++LL AG KG R+ALP++R
Sbjct: 62  INLYINSPGGSVTAGLAIYDTMQYVKCPVSTICVGQAASMGAVLLLAGAKGKRYALPSSR 121

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQP GG  GQA+DIE  A++I+++K +LNE+ VK+ G++ E VEK  DRD+ M ASE
Sbjct: 122 IMIHQPLGGVRGQATDIEIQAKEILRMKAKLNELIVKHTGQSIERVEKDTDRDYFMGASE 181

Query: 195 ACDWGVVDKVLMSRI 209
           A  +G++D++   R 
Sbjct: 182 AKAYGIIDEIQNPRK 196


>gi|91205226|ref|YP_537581.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia bellii
           RML369-C]
 gi|157827437|ref|YP_001496501.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia bellii
           OSU 85-389]
 gi|91068770|gb|ABE04492.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia bellii
           RML369-C]
 gi|157802741|gb|ABV79464.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia bellii
           OSU 85-389]
          Length = 264

 Score =  284 bits (727), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 125/204 (61%), Positives = 165/204 (80%)

Query: 5   GCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLL 64
              +   E   +  VP+V+EQT+RGER+YDIYSRLLKERI+FV G IEDHMA LI AQLL
Sbjct: 49  PSNENFKEKYPMSYVPIVIEQTSRGERAYDIYSRLLKERIIFVCGPIEDHMANLITAQLL 108

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           FLEAENP+K+I +YINSPGGVVTAG+AIYDTMQ+IKP ++T C+GQA SMGS LL  GEK
Sbjct: 109 FLEAENPEKDIYMYINSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSFLLCGGEK 168

Query: 125 GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
           GMR++LP++R+++HQPSGG+ GQA+DIE HAQ+ +KIK+ LN +Y K+ G+  + VEK++
Sbjct: 169 GMRYSLPHSRVMIHQPSGGYRGQATDIEIHAQETLKIKKILNSLYSKHTGQDVKHVEKSM 228

Query: 185 DRDHIMSASEACDWGVVDKVLMSR 208
           +RD+ MS  EA  +G++DK++  R
Sbjct: 229 ERDNFMSPEEAKKFGIIDKIITHR 252


>gi|116062109|dbj|BAF34687.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           protease [Aeromonas veronii]
          Length = 207

 Score =  284 bits (727), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 126/202 (62%), Positives = 156/202 (77%)

Query: 7   AKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
           +          L+PMVVEQT +GERSYDIYSRLLKER++F+TGQ+EDHMA L+ AQLLFL
Sbjct: 5   SPAMRSSPRNALIPMVVEQTAKGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFL 64

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E+ENP ++IS+YINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+ G KG 
Sbjct: 65  ESENPDQDISIYINSPGGAVTAGMSIYDTMQFIKPDVSTVCMGQACSMGAFLLAGGAKGK 124

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           RF LPNAR+++HQP GGF GQASDI+ HAQ+I+KIK  LNE    + G+    +E+  DR
Sbjct: 125 RFCLPNARVMIHQPLGGFQGQASDIQIHAQEILKIKNTLNERLAFHTGQDMATIERDTDR 184

Query: 187 DHIMSASEACDWGVVDKVLMSR 208
           D+ MSA +A  +G+VD VL  R
Sbjct: 185 DNFMSAEQAVAYGLVDGVLSQR 206


>gi|303239032|ref|ZP_07325562.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acetivibrio
           cellulolyticus CD2]
 gi|302593370|gb|EFL63088.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acetivibrio
           cellulolyticus CD2]
          Length = 194

 Score =  284 bits (727), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 112/194 (57%), Positives = 150/194 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQTNRGERSYDI+SRLLK+RI+ ++ ++ D  A+L+ AQ+LFLEAE+P K+I
Sbjct: 1   MSLVPVVVEQTNRGERSYDIFSRLLKDRIILLSDEVNDVTASLVVAQMLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG V+AG AIYDTMQ++KP +ST C+G AASMG+ LL+AG KG RFALPN+ I
Sbjct: 61  QLYINSPGGSVSAGFAIYDTMQYVKPDVSTICIGMAASMGAFLLNAGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++I+ HA+ I+K + RLN I  +  G+  E++E   +RD  MSA EA
Sbjct: 121 MIHQPLGGTRGQATEIKIHAEHILKTRDRLNRILSEKTGQPLEKIEADTERDFFMSAEEA 180

Query: 196 CDWGVVDKVLMSRI 209
             +G+VD V+  R 
Sbjct: 181 KAYGLVDDVMERRK 194


>gi|326403118|ref|YP_004283199.1| ATP-dependent Clp protease proteolytic subunit [Acidiphilium
           multivorum AIU301]
 gi|325049979|dbj|BAJ80317.1| ATP-dependent Clp protease proteolytic subunit [Acidiphilium
           multivorum AIU301]
          Length = 209

 Score =  284 bits (727), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 131/208 (62%), Positives = 173/208 (83%), Gaps = 1/208 (0%)

Query: 8   KKDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
            +D  ++++  LVPMVVEQT RGERSYDI+SRLLKERI+F+TG + D + +LI AQLLFL
Sbjct: 2   DRDPTEIYMNSLVPMVVEQTARGERSYDIFSRLLKERIIFLTGPVYDQVGSLIAAQLLFL 61

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E+ENP KEI+ YINSPGGVV+AG+AIYDTMQ+IK P+ST C+GQAASMGSLLL+AGEKG 
Sbjct: 62  ESENPSKEIAFYINSPGGVVSAGLAIYDTMQYIKSPVSTVCIGQAASMGSLLLAAGEKGK 121

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           RFALPN+RI++HQPSGG  GQASDIE  A++I+ ++RRLN+IYV + G++ E +E+ L+R
Sbjct: 122 RFALPNSRIMVHQPSGGAQGQASDIEIQAREILTLRRRLNDIYVTHTGQSLEAIEQALER 181

Query: 187 DHIMSASEACDWGVVDKVLMSRIDIEEK 214
           D  MSA+EA ++G+VD+V+  +   + K
Sbjct: 182 DRFMSANEAQEFGLVDEVVEKKPAKDSK 209


>gi|83954269|ref|ZP_00962989.1| Protease subunit of ATP-dependent Clp protease [Sulfitobacter sp.
           NAS-14.1]
 gi|83841306|gb|EAP80476.1| Protease subunit of ATP-dependent Clp protease [Sulfitobacter sp.
           NAS-14.1]
          Length = 219

 Score =  284 bits (727), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 131/205 (63%), Positives = 171/205 (83%), Gaps = 1/205 (0%)

Query: 10  DSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           D  D ++  LVPMVVEQT+RGER+YDI+SRLLKERI+F+ G + D M++LI AQLL LEA
Sbjct: 3   DPHDTYMNTLVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMSSLIVAQLLHLEA 62

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP KEIS+YINSPGGVVT+G++IYDTMQ+IKP +ST  +GQAASMGSLLL AGEKGMRF
Sbjct: 63  ENPSKEISMYINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLQAGEKGMRF 122

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPN+R+++HQPSGG+ GQA+DI  HAQ+  K+K RLNEIYVK+ G+  E+VE  L+RD+
Sbjct: 123 SLPNSRVMVHQPSGGYQGQATDIMIHAQETQKLKTRLNEIYVKHTGQPLEKVEAALERDN 182

Query: 189 IMSASEACDWGVVDKVLMSRIDIEE 213
            MS  EA DWG++D+++ +R  +++
Sbjct: 183 FMSPEEAKDWGLIDEIVENRGKMDD 207


>gi|119384010|ref|YP_915066.1| endopeptidase Clp [Paracoccus denitrificans PD1222]
 gi|119373777|gb|ABL69370.1| ATP-dependent Clp protease proteolytic subunit ClpP [Paracoccus
           denitrificans PD1222]
          Length = 209

 Score =  284 bits (727), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 133/208 (63%), Positives = 173/208 (83%), Gaps = 1/208 (0%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           +D  + ++  LVPMVVEQT+RGER+YDI+SRLLKERI+F++G + D MATLI AQLLFLE
Sbjct: 2   QDPAEFYMNTLVPMVVEQTSRGERAYDIFSRLLKERIIFLSGPVHDGMATLISAQLLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AENP K+IS+YINSPGGVVT+G++IYDTMQ+IKP +ST  +GQAASMGSLLL AG+ G R
Sbjct: 62  AENPTKDISMYINSPGGVVTSGLSIYDTMQYIKPRVSTLVVGQAASMGSLLLCAGQPGQR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           F+LPN+R+++HQPSGGF GQA+DI  HA++  K+KRRLNEIYVK+ G+T EEVE+ L+RD
Sbjct: 122 FSLPNSRVMVHQPSGGFQGQATDILIHARETEKLKRRLNEIYVKHTGRTLEEVEQALERD 181

Query: 188 HIMSASEACDWGVVDKVLMSRIDIEEKS 215
             MS  EA +WG++D++L++R   E   
Sbjct: 182 RFMSPEEAKEWGLIDEILVARGKAEPDK 209


>gi|153955960|ref|YP_001396725.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           kluyveri DSM 555]
 gi|219856302|ref|YP_002473424.1| hypothetical protein CKR_2959 [Clostridium kluyveri NBRC 12016]
 gi|189082452|sp|A5N2K8|CLPP_CLOK5 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|254763788|sp|B9E685|CLPP_CLOK1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|146348818|gb|EDK35354.1| ClpP [Clostridium kluyveri DSM 555]
 gi|219570026|dbj|BAH08010.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 194

 Score =  284 bits (727), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 119/194 (61%), Positives = 155/194 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQTNRGERSYDIYSRLLK+RIV ++ ++ D  A+LI AQLLFLEAENP K+I
Sbjct: 1   MSLVPVVVEQTNRGERSYDIYSRLLKDRIVMLSEEVNDVTASLIVAQLLFLEAENPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG +TAGMAIYDTMQ+IK  +ST C+G AASMG+ LL+AGEKG RFALPN+ I
Sbjct: 61  YFYINSPGGSITAGMAIYDTMQYIKSDVSTICIGMAASMGAFLLAAGEKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DI  HA  I++IK++LN I  +  G++ E+VEK  +RD+ M+A EA
Sbjct: 121 MIHQPLGGFQGQATDIGIHADRILRIKKKLNAIISERTGQSIEKVEKDTERDNFMTAEEA 180

Query: 196 CDWGVVDKVLMSRI 209
            ++G++D+V   + 
Sbjct: 181 KEYGLIDEVFTKKK 194


>gi|32035048|ref|ZP_00135114.1| COG0740: Protease subunit of ATP-dependent Clp proteases
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126208746|ref|YP_001053971.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae L20]
 gi|165976699|ref|YP_001652292.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|307246197|ref|ZP_07528278.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307255177|ref|ZP_07536995.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307257345|ref|ZP_07539115.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307259615|ref|ZP_07541339.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307261756|ref|ZP_07543422.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|166201796|sp|A3N1T0|CLPP_ACTP2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706436|sp|B0BQL3|CLPP_ACTPJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|126097538|gb|ABN74366.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|165876800|gb|ABY69848.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|306852806|gb|EFM85030.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306862050|gb|EFM94026.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306864195|gb|EFM96108.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306866260|gb|EFM98124.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306868574|gb|EFN00385.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 196

 Score =  284 bits (727), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 123/193 (63%), Positives = 157/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQT++GERSYDIYSRLLKERI+F+TGQ+EDHMA LI AQ+LFLEAE+P+K+I
Sbjct: 1   MALVPIVVEQTSKGERSYDIYSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVTAG+AIYDTM FIKP ++T C GQA SMG+ LLS G KG RFALPNAR+
Sbjct: 61  YLYINSPGGVVTAGLAIYDTMNFIKPDVATLCTGQACSMGAFLLSGGAKGKRFALPNARV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+  AQ+I+K+K  L     ++ G+ +E+V    +RD+ MSA EA
Sbjct: 121 MIHQPLGGARGQATDIQIQAQEILKLKEMLTRKMAEHSGQPFEKVAADTERDNFMSAVEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++DKVL  R
Sbjct: 181 MEYGLIDKVLTHR 193


>gi|255284021|ref|ZP_05348576.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bryantella
           formatexigens DSM 14469]
 gi|255265474|gb|EET58679.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bryantella
           formatexigens DSM 14469]
          Length = 194

 Score =  284 bits (727), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 113/193 (58%), Positives = 149/193 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP V+EQT+RGERSYDIYSRLLK+RI+F+  ++ D  A LI AQLLFLE+E+P K+I
Sbjct: 1   MSFVPYVIEQTSRGERSYDIYSRLLKDRIIFLGEEVTDVSANLIVAQLLFLESEDPAKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG V+AG AIYDTMQ+IK  +ST CMG AASMG+ LL+ G KG RFALPNA+I
Sbjct: 61  QLYINSPGGSVSAGWAIYDTMQYIKCDVSTICMGMAASMGAFLLAGGAKGKRFALPNAQI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQASDI+  A++I+K ++RLNE    N G+  + +E   +RD+ M+A EA
Sbjct: 121 MIHQPSGGAKGQASDIKIVAEEILKSRKRLNEYLAANTGQPIDVIEADTERDNYMTAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D V+ +R
Sbjct: 181 KAYGLIDAVIANR 193


>gi|153009536|ref|YP_001370751.1| ATP-dependent Clp protease proteolytic subunit [Ochrobactrum
           anthropi ATCC 49188]
 gi|151561424|gb|ABS14922.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ochrobactrum
           anthropi ATCC 49188]
          Length = 230

 Score =  284 bits (727), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 150/208 (72%), Positives = 183/208 (87%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  +  + LVPMVVEQTNRGER+YDI+SRLLKERI+FV G +ED M+ L+CAQLLFLEA
Sbjct: 23  RDPIETVMNLVPMVVEQTNRGERAYDIFSRLLKERIIFVNGPVEDGMSMLVCAQLLFLEA 82

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI++YINSPGGVVT+GMAIYDTMQFI+PP+ST CMGQAASMGSLLL+AG  G R+
Sbjct: 83  ENPKKEINMYINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGATGQRY 142

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           ALPNARI++HQPSGGF GQASDIERHAQDI+K+KRRLNEIYVK+ G+ YE +E+TLDRDH
Sbjct: 143 ALPNARIMVHQPSGGFQGQASDIERHAQDIIKMKRRLNEIYVKHTGRDYETIERTLDRDH 202

Query: 189 IMSASEACDWGVVDKVLMSRIDIEEKSK 216
            M+A EA ++G++DKV+ SR    ++SK
Sbjct: 203 FMTAQEALEFGLIDKVVESRDVGADESK 230


>gi|116074350|ref|ZP_01471612.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. RS9916]
 gi|116069655|gb|EAU75407.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. RS9916]
          Length = 229

 Score =  284 bits (727), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 108/194 (55%), Positives = 146/194 (75%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G++P VVEQ+ RGER++DIYSRLL+ERI+F+   I+D +A  + AQLLFLEAE+P+K+I 
Sbjct: 29  GVLPTVVEQSGRGERAFDIYSRLLRERIIFLGTGIDDQVADALVAQLLFLEAEDPEKDIQ 88

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VTAG+AIYDTMQ + P + T C G AASMG+ LLS G KG R ALPNARI+
Sbjct: 89  IYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIM 148

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA DIE  AQ+I+ +K  LN +  ++ G+  E + +  DRDH +S +EA 
Sbjct: 149 IHQPMGGAQGQAVDIEIQAQEILYLKETLNGLMAEHTGQPLETIAEDTDRDHFLSPAEAV 208

Query: 197 DWGVVDKVLMSRID 210
           ++G++D+V+ S  D
Sbjct: 209 EYGLIDRVVDSPAD 222


>gi|187776850|ref|ZP_02993323.1| hypothetical protein CLOSPO_00389 [Clostridium sporogenes ATCC
           15579]
 gi|187775509|gb|EDU39311.1| hypothetical protein CLOSPO_00389 [Clostridium sporogenes ATCC
           15579]
          Length = 194

 Score =  284 bits (727), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 116/194 (59%), Positives = 155/194 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQTNRGERSYDIYSRLLK+RI+ ++ ++ D  A+LI AQLLFLEAE+P K+I
Sbjct: 1   MSLVPVVVEQTNRGERSYDIYSRLLKDRIIMLSEEVNDTTASLIVAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +T+GMAIYDTMQ+IKP +ST C+G AASMG+ LL+AG KG R+ALPN+ +
Sbjct: 61  YLYINSPGGSITSGMAIYDTMQYIKPDVSTICVGMAASMGAFLLAAGAKGKRYALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DI  HA+ I+K+K++LN I     GK  E+VE   +RDH +SA EA
Sbjct: 121 MIHQPLGGFRGQATDIGIHAERILKMKKKLNTILSDRTGKPLEQVELDTERDHFLSAEEA 180

Query: 196 CDWGVVDKVLMSRI 209
            ++G++D+V+  + 
Sbjct: 181 KEYGLIDEVIDKKK 194


>gi|323144789|ref|ZP_08079363.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Succinatimonas hippei YIT 12066]
 gi|322415435|gb|EFY06195.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Succinatimonas hippei YIT 12066]
          Length = 200

 Score =  284 bits (727), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 125/196 (63%), Positives = 159/196 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
             LVPMV+EQT RGERS+DIYSRLLKER++F+TG++EDHMA LI AQLLFLE+++P K+I
Sbjct: 3   STLVPMVIEQTARGERSFDIYSRLLKERVIFMTGEVEDHMADLIVAQLLFLESDDPDKDI 62

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVTAGMAIYDTMQ+IKP + T CMGQA SMGS LL+ G  G RFALP++RI
Sbjct: 63  YLYINSPGGVVTAGMAIYDTMQYIKPDVCTLCMGQACSMGSFLLAGGAPGKRFALPHSRI 122

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQASDI  HA++  ++KR L E+  K+ GK+ +EV +  DRD+ MSA EA
Sbjct: 123 MIHQPLGGFKGQASDIMIHARETERVKRTLTELLAKHTGKSVDEVMQDCDRDNFMSAEEA 182

Query: 196 CDWGVVDKVLMSRIDI 211
             +G++D+V+ SR +I
Sbjct: 183 LAYGLIDRVITSRDEI 198


>gi|255321158|ref|ZP_05362324.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter
           radioresistens SK82]
 gi|262380154|ref|ZP_06073309.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter
           radioresistens SH164]
 gi|255301712|gb|EET80963.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter
           radioresistens SK82]
 gi|262298348|gb|EEY86262.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter
           radioresistens SH164]
          Length = 201

 Score =  284 bits (727), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 123/193 (63%), Positives = 159/193 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVP+VVEQ++RGERS+DI+SRLL+ER++F+TG++ED+MA LI AQ+LFLEAENP K+I 
Sbjct: 9   ALVPVVVEQSSRGERSFDIFSRLLRERVIFLTGEVEDNMANLIVAQMLFLEAENPDKDIH 68

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGMAIYDTMQFIKP + T+CMGQAASMG+ LL+AG KG RF L NAR++
Sbjct: 69  LYINSPGGSVTAGMAIYDTMQFIKPDVVTYCMGQAASMGAFLLNAGAKGKRFCLENARVM 128

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+ IK RLN +  ++ G+ YE + +  DRD+ M+A  A 
Sbjct: 129 IHQPLGGFRGQASDIEIHAREILFIKERLNRLMAEHSGQDYERIARDTDRDNFMTAQAAK 188

Query: 197 DWGVVDKVLMSRI 209
           ++G+VD+VL  R 
Sbjct: 189 EYGLVDEVLSKRP 201


>gi|312898487|ref|ZP_07757877.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Megasphaera
           micronuciformis F0359]
 gi|310620406|gb|EFQ03976.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Megasphaera
           micronuciformis F0359]
          Length = 202

 Score =  284 bits (727), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 114/195 (58%), Positives = 158/195 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP+VVEQ+++GERSYDIYSRLLK+RI+F+TG I+D +A  + AQLLFLEA+NP K+I
Sbjct: 3   MQYVPIVVEQSSQGERSYDIYSRLLKDRIIFLTGAIDDTVANSVIAQLLFLEADNPDKDI 62

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVTAGMAIYDTM++IKP +ST C+G AASM S+LL+AG KG RFALP++++
Sbjct: 63  HLYINSPGGVVTAGMAIYDTMRYIKPDVSTICVGSAASMASVLLTAGTKGKRFALPHSQV 122

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDIE HA++I+++++ LN I   + G+  + +EK  +RD+ M+A EA
Sbjct: 123 MIHQPLGGVQGQASDIEIHAREILRMRKELNGILATHTGQPVDVIEKDTERDNFMTAEEA 182

Query: 196 CDWGVVDKVLMSRID 210
             +G+VD++L+   D
Sbjct: 183 KAYGLVDEILIRPGD 197


>gi|229827570|ref|ZP_04453639.1| hypothetical protein GCWU000182_02959 [Abiotrophia defectiva ATCC
           49176]
 gi|229788208|gb|EEP24322.1| hypothetical protein GCWU000182_02959 [Abiotrophia defectiva ATCC
           49176]
          Length = 194

 Score =  284 bits (727), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 112/194 (57%), Positives = 151/194 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLL++RI+F+  ++ D  A++I AQLLFLEAE+P K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLEDRIIFLGEEVTDVSASVIIAQLLFLEAEDPSKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMAIYDTM +IK  +ST CMG AASMG+ LL+ G KG R ALPN+ I
Sbjct: 61  HLYINSPGGSVTAGMAIYDTMNYIKCDVSTICMGLAASMGAFLLAGGTKGKRLALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQASDI+  A +I+K ++RLNE+   N G+  E++E+  +RD+ M+A EA
Sbjct: 121 MIHQPSGGARGQASDIKIVADNIIKTRKRLNEMLAANTGRPLEDIERDTERDNFMTAEEA 180

Query: 196 CDWGVVDKVLMSRI 209
             +G++D+++  R 
Sbjct: 181 KAYGLIDEIVTKRA 194


>gi|147677139|ref|YP_001211354.1| protease subunit of ATP-dependent Clp proteases [Pelotomaculum
           thermopropionicum SI]
 gi|259585961|sp|A5D447|CLPP_PELTS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|146273236|dbj|BAF58985.1| protease subunit of ATP-dependent Clp proteases [Pelotomaculum
           thermopropionicum SI]
          Length = 194

 Score =  284 bits (727), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 117/194 (60%), Positives = 160/194 (82%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQTNRGER+YDIYSRLLK+RI+F+ G I+D+ A LI AQ+LFLEAE+P+K+I
Sbjct: 1   MNLVPIVVEQTNRGERAYDIYSRLLKDRIIFLGGPIDDNTANLIIAQMLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGGVVTAGMAIYDTMQ+++ P++T C+GQAASM SLLL+AG KG R++LP ARI
Sbjct: 61  QFYINSPGGVVTAGMAIYDTMQYVRSPVATICIGQAASMASLLLAAGAKGKRYSLPYARI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQP GG  GQA+DIE HA++I+++++ LNEI  ++ G+  E++ +  +RD+ MSA EA
Sbjct: 121 LIHQPLGGVQGQATDIEIHAKEILRMRQFLNEILSRHTGQPIEKIARDTERDYFMSAQEA 180

Query: 196 CDWGVVDKVLMSRI 209
            ++G++D+V   R 
Sbjct: 181 KEYGIIDEVYDVRK 194


>gi|86159772|ref|YP_466557.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|220918591|ref|YP_002493895.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|115311353|sp|Q2IEW1|CLPP_ANADE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|254763782|sp|B8J5G7|CLPP_ANAD2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|85776283|gb|ABC83120.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|219956445|gb|ACL66829.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 203

 Score =  284 bits (726), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 110/199 (55%), Positives = 157/199 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            +P VVEQT+RGERSYDIYSRLLK+RI+F+   ++D +A +I AQLLFLE+E+P K+I+L
Sbjct: 5   PMPYVVEQTHRGERSYDIYSRLLKDRIIFLGTPVDDDVANVIIAQLLFLESEDPDKDINL 64

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VT+G+AIYDTMQ++KP +ST C+GQAASMG+ LL+ G  G RFA+PNARI++
Sbjct: 65  YINSPGGSVTSGLAIYDTMQYVKPQVSTICLGQAASMGAFLLAGGAAGKRFAVPNARIMI 124

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQ SGGF GQA+DIE  A++ +++K +LNEI  ++  +  E +E+  +RD+ MSA EA +
Sbjct: 125 HQLSGGFQGQATDIEIQAKEALRLKAKLNEIMARHTRQPIERIERDTERDYFMSAGEAKE 184

Query: 198 WGVVDKVLMSRIDIEEKSK 216
           +G++D V + +   ++K +
Sbjct: 185 YGLIDDVFLHKKAADKKPQ 203


>gi|313894919|ref|ZP_07828479.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312976600|gb|EFR42055.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 205

 Score =  284 bits (726), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 111/198 (56%), Positives = 159/198 (80%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VPMVVE ++RGER+YDIYSRLLKERI+F+ G I+D +A ++ AQ+LFLE+E+P K+I LY
Sbjct: 5   VPMVVENSSRGERAYDIYSRLLKERIIFLGGPIDDSVANVVVAQMLFLESEDPDKDIHLY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGVVTAG+AIYDTMQ+IKP +ST C+GQAASMGS+LL+AG KG R+ALP+ARI++H
Sbjct: 65  INSPGGVVTAGLAIYDTMQYIKPDVSTICIGQAASMGSILLTAGAKGKRYALPHARIMIH 124

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQ++DI+  A++I++++   NEI  ++ G+  +++    +RD+ MSA EA  +
Sbjct: 125 QPLGGAQGQSTDIQIQAKEILRLREVGNEILARHTGQDTDKINVDTERDNFMSAEEAKAY 184

Query: 199 GVVDKVLMSRIDIEEKSK 216
           G++D+V++      ++SK
Sbjct: 185 GLIDEVVVRPPAASKESK 202


>gi|253996690|ref|YP_003048754.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylotenera
           mobilis JLW8]
 gi|253983369|gb|ACT48227.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylotenera
           mobilis JLW8]
          Length = 214

 Score =  284 bits (726), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 120/207 (57%), Positives = 165/207 (79%)

Query: 4   EGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQL 63
           +  A+ +     LG +PMV+EQ+ RGERS+DIYSRLLKER++F+ G + D  A L+ AQL
Sbjct: 6   QPQAQSELITTGLGYIPMVIEQSGRGERSFDIYSRLLKERVIFLVGPVNDMSANLVVAQL 65

Query: 64  LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           LFLEAENP K+ISLYINSPGG VTAGM+IYDTMQFIKP +ST C+GQAASMG+ LL+AG 
Sbjct: 66  LFLEAENPDKDISLYINSPGGSVTAGMSIYDTMQFIKPDVSTLCIGQAASMGAFLLAAGA 125

Query: 124 KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
           K  R++LPN+RI++HQPSGGF GQ+SDIE HA++I+ ++ +LN+I   + G+T EE+++ 
Sbjct: 126 KDKRYSLPNSRIMIHQPSGGFQGQSSDIEIHAKEILYLRAKLNDILAHHTGRTAEEIDRD 185

Query: 184 LDRDHIMSASEACDWGVVDKVLMSRID 210
            +RD+ MSA ++  +G++DKV+ SR +
Sbjct: 186 TERDNFMSAEQSVAYGLIDKVIGSRNE 212


>gi|269792564|ref|YP_003317468.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100199|gb|ACZ19186.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 199

 Score =  284 bits (726), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 114/191 (59%), Positives = 152/191 (79%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P V+EQT RGERSYDIYSRLLK+RI+F+  +I+DH++ L+ AQLLFLE+E+P K++ +
Sbjct: 9   LIPYVIEQTGRGERSYDIYSRLLKDRIIFIGQEIDDHLSNLVVAQLLFLESEDPDKDVFV 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVTAG+AIYDTMQ++K P+ST C+GQAASM ++LLSAGEKG R  LP++RI++
Sbjct: 69  YINSPGGVVTAGLAIYDTMQYVKCPVSTICVGQAASMAAVLLSAGEKGKRICLPHSRIMI 128

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I+++K  LN I   + G+  + + K  DRD  MSA EA  
Sbjct: 129 HQPLGGAQGQASDIEIQAKEILRMKEILNSILSNHTGQPMDRIAKDTDRDFFMSAEEAMA 188

Query: 198 WGVVDKVLMSR 208
           +G+VDKV+  R
Sbjct: 189 YGIVDKVIDRR 199


>gi|152980689|ref|YP_001353221.1| protease subunit of ATP-dependent Clp proteases [Janthinobacterium
           sp. Marseille]
 gi|226706516|sp|A6SY74|CLPP_JANMA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|151280766|gb|ABR89176.1| protease subunit of ATP-dependent Clp proteases [Janthinobacterium
           sp. Marseille]
          Length = 210

 Score =  284 bits (726), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 126/195 (64%), Positives = 156/195 (80%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
            LG+VPMV+EQ+ RGER+YDIYSRLLKERI+F+ G + D MA LI AQLLFLE+ENP K+
Sbjct: 16  MLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDQMANLIVAQLLFLESENPDKD 75

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           ISLYINSPGG V+AGMAIYDTMQFIKP +ST C G AASMG+ LL+AGEKG RF+LPN+R
Sbjct: 76  ISLYINSPGGSVSAGMAIYDTMQFIKPNVSTLCTGLAASMGAFLLAAGEKGKRFSLPNSR 135

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQP GG  GQASDIE  A++I+ ++ RLN I  +  GK+ EE+ K  DRD+ MSA  
Sbjct: 136 IMIHQPLGGAQGQASDIEIQAREILYLRERLNAILAERTGKSVEEIAKDTDRDNFMSADA 195

Query: 195 ACDWGVVDKVLMSRI 209
           A  +G++DKVL +R 
Sbjct: 196 AVTYGMIDKVLATRA 210


>gi|229541478|ref|ZP_04430538.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           coagulans 36D1]
 gi|229325898|gb|EEN91573.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           coagulans 36D1]
          Length = 196

 Score =  284 bits (726), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 106/193 (54%), Positives = 150/193 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RI+ +   I+D+++  I +QLLFLEAENP+K+I
Sbjct: 1   MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVSNSIVSQLLFLEAENPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG+AIYDTMQ IKP + T C+G AASMGS+LL+AG KG R+ALPN+ +
Sbjct: 61  YLYINSPGGSVTAGLAIYDTMQIIKPDVQTICVGMAASMGSVLLTAGTKGKRYALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+  + +LN+I   + G+  E +E+  DRD+ MSA +A
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKHILYTRAKLNKILSDHTGQPIEVIERDTDRDNFMSAEKA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++D ++  +
Sbjct: 181 KEYGLIDHIMTKK 193


>gi|299143348|ref|ZP_07036428.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Peptoniphilus
           sp. oral taxon 386 str. F0131]
 gi|298517833|gb|EFI41572.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Peptoniphilus
           sp. oral taxon 386 str. F0131]
          Length = 194

 Score =  284 bits (726), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 116/193 (60%), Positives = 153/193 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQTN GERSYDIYSRLLKERI+F++G+I D  A L+ AQLLFLEAE+  K+I
Sbjct: 1   MALVPMVVEQTNHGERSYDIYSRLLKERIIFLSGEINDVTADLVVAQLLFLEAEDQNKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG V+AG AIYDT+++IK  +ST  +G AASMG+ LL+AG KG RFALPNA I
Sbjct: 61  QIYINSPGGSVSAGFAIYDTIKYIKCDVSTMVIGLAASMGAFLLAAGTKGKRFALPNADI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDI+ HA+ I++I+ R+N+I  +  G+  E+VE+  DRD+ +SA EA
Sbjct: 121 MIHQPLGGAQGQASDIKIHAEKILEIRERINKILSEETGQPLEKVERDTDRDYYLSAKEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++DKV+  R
Sbjct: 181 VEYGLIDKVIEKR 193


>gi|325662430|ref|ZP_08151036.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|331086220|ref|ZP_08335302.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|325471264|gb|EGC74488.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|330406379|gb|EGG85893.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 193

 Score =  284 bits (726), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 113/192 (58%), Positives = 150/192 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLLK+RI+F+  ++ D  A++I AQLLFLEAE+P+K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLKDRIIFLGEEVNDVSASVIVAQLLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMAIYDTMQFIK  +ST C+G AASMG+ LL+ G KG R+ALPNA I
Sbjct: 61  HLYINSPGGSVTAGMAIYDTMQFIKCDVSTTCIGMAASMGAFLLAGGAKGKRYALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+DI+  A  I+K + +LN+I  +N G+    +E   +RD+ MSA EA
Sbjct: 121 MIHQPSGGAQGQATDIKIVADHILKTRTKLNKILAENTGQDLSVIEVDTERDNYMSAEEA 180

Query: 196 CDWGVVDKVLMS 207
             +G++D+V++ 
Sbjct: 181 KAYGLIDEVIIK 192


>gi|310639654|ref|YP_003944412.1| ATP-dependent clp protease proteolytic subunit [Paenibacillus
           polymyxa SC2]
 gi|309244604|gb|ADO54171.1| ATP-dependent Clp protease proteolytic subunit [Paenibacillus
           polymyxa SC2]
          Length = 198

 Score =  284 bits (726), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 113/192 (58%), Positives = 149/192 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VPMVVEQ+NRGER+YDIYSRLLK+RI+ +   + D +A  I AQ+LFL AE+P+K+I
Sbjct: 1   MSYVPMVVEQSNRGERAYDIYSRLLKDRIILLGSDVNDVVANSIIAQMLFLAAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +TAGMAI+DTMQ+IKP +ST C+G AASMG+ LL+AG KG RFALPN+ I
Sbjct: 61  HLYINSPGGSITAGMAIFDTMQYIKPDVSTICVGMAASMGAFLLNAGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DIE  A+ I+K++ +LN I     G+  E +EK  DRD+ MSA +A
Sbjct: 121 MIHQPLGGAQGQATDIEIRARRILKMRDKLNRILADRTGQPLERIEKDTDRDYFMSADDA 180

Query: 196 CDWGVVDKVLMS 207
            ++G++DKVL S
Sbjct: 181 KEYGIIDKVLTS 192


>gi|226311381|ref|YP_002771275.1| ATP-dependent Clp protease proteolytic subunit [Brevibacillus
           brevis NBRC 100599]
 gi|226094329|dbj|BAH42771.1| ATP-dependent Clp protease proteolytic subunit [Brevibacillus
           brevis NBRC 100599]
          Length = 193

 Score =  284 bits (726), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 120/191 (62%), Positives = 153/191 (80%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+PMV+EQT+RGERSYDIYSRLLK+RI+ +  +I+D +A LI AQLLFL+AE+P K+ISL
Sbjct: 2   LIPMVIEQTSRGERSYDIYSRLLKDRIILLGTEIDDEIANLIVAQLLFLQAEDPDKDISL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGMAIYDTMQ+IKP +ST C+G AASMG+ LL+AG KG RFALPNA +++
Sbjct: 62  YINSPGGSVTAGMAIYDTMQYIKPDVSTICVGMAASMGAFLLAAGAKGKRFALPNAEVMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA DI  HA+ I+K KR+LNEI  +  G+ YE VE+  DRD+ MSA EA  
Sbjct: 122 HQPLGGVRGQAEDIRIHAEWIMKTKRQLNEILSERTGQPYERVEQDTDRDNFMSAEEAKA 181

Query: 198 WGVVDKVLMSR 208
           +G++D ++  +
Sbjct: 182 YGLIDSIIERK 192


>gi|269959005|ref|YP_003328794.1| ATP-dependent Clp protease proteolytic subunit [Anaplasma centrale
           str. Israel]
 gi|269848836|gb|ACZ49480.1| ATP-dependent Clp protease proteolytic subunit [Anaplasma centrale
           str. Israel]
          Length = 215

 Score =  284 bits (726), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 138/200 (69%), Positives = 177/200 (88%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
            + E   + LVPMVVEQT+RGER+YDIYSRLLKERI+F+TG +ED+MA+LI AQL+FLEA
Sbjct: 11  WEFEREIMNLVPMVVEQTSRGERAYDIYSRLLKERIIFITGTVEDNMASLIVAQLVFLEA 70

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+K+ISLYINSPGGVVTAG++IYDTMQ+IKP +ST C+GQAASMG+LLL+ GE GMR+
Sbjct: 71  ENPEKDISLYINSPGGVVTAGLSIYDTMQYIKPKVSTLCLGQAASMGALLLAGGEPGMRY 130

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           ALPN+RI++HQPSGGF GQA+DIE HA++I++IKRRLNEIYVK+ GK+ EE+E +++RD+
Sbjct: 131 ALPNSRIMVHQPSGGFRGQATDIEIHAREILEIKRRLNEIYVKHTGKSLEEIESSMERDN 190

Query: 189 IMSASEACDWGVVDKVLMSR 208
            M A +A D+G+VDKV+  R
Sbjct: 191 FMVAEKAKDFGIVDKVIDKR 210


>gi|52082006|ref|YP_080797.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           licheniformis ATCC 14580]
 gi|52787393|ref|YP_093222.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           licheniformis ATCC 14580]
 gi|319647870|ref|ZP_08002088.1| ATP-dependent Clp protease proteolytic subunit 1 [Bacillus sp.
           BT1B_CT2]
 gi|67460468|sp|Q65EI5|CLPP1_BACLD RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|52005217|gb|AAU25159.1| ATP-dependent Clp protease proteolytic subunit (class III
           heat-shock protein) [Bacillus licheniformis ATCC 14580]
 gi|52349895|gb|AAU42529.1| ClpP [Bacillus licheniformis ATCC 14580]
 gi|317390211|gb|EFV71020.1| ATP-dependent Clp protease proteolytic subunit 1 [Bacillus sp.
           BT1B_CT2]
          Length = 198

 Score =  284 bits (726), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 112/198 (56%), Positives = 156/198 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFLEAE+P+K+I
Sbjct: 1   MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGG +TAGMAIYDTMQFIKP +ST C G AASMG+ LL+AGEKG R+ALPN+ +
Sbjct: 61  SIYINSPGGSITAGMAIYDTMQFIKPQVSTICTGMAASMGAFLLAAGEKGKRYALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN+I  +  G+  E +E+  DRD+  +A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILSLRDKLNKILAERTGQPLEVIERDTDRDNFKTAEEA 180

Query: 196 CDWGVVDKVLMSRIDIEE 213
            ++G++DKVL   ID ++
Sbjct: 181 KEYGLIDKVLTRNIDAQK 198


>gi|331005198|ref|ZP_08328592.1| ATP-dependent Clp protease proteolytic subunit [gamma
           proteobacterium IMCC1989]
 gi|330420980|gb|EGG95252.1| ATP-dependent Clp protease proteolytic subunit [gamma
           proteobacterium IMCC1989]
          Length = 208

 Score =  284 bits (726), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 129/203 (63%), Positives = 161/203 (79%)

Query: 7   AKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
           +    E    GLVPMVVEQT RGERSYDIYSRLLKER++F+ GQ+EDHMA L+ AQLLFL
Sbjct: 4   SSISQEVTNSGLVPMVVEQTARGERSYDIYSRLLKERVIFMVGQVEDHMANLVVAQLLFL 63

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           EAENP K+I LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+ LL+AG  G 
Sbjct: 64  EAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDVSTMCIGQACSMGAFLLNAGAPGK 123

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           RF LPNAR ++HQPSGG  GQA+DI   A++I+KI++RLNEI  K+ G+ ++E+ +  +R
Sbjct: 124 RFCLPNARTMIHQPSGGAQGQATDISIQAEEILKIRQRLNEIMAKHSGRDFDEIARDTER 183

Query: 187 DHIMSASEACDWGVVDKVLMSRI 209
           D  MSA E+ ++G++D VL SRI
Sbjct: 184 DRFMSADESKEYGLIDDVLTSRI 206


>gi|30248062|ref|NP_840132.1| Clp protease [Nitrosomonas europaea ATCC 19718]
 gi|60389763|sp|Q82Y57|CLPP_NITEU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|30179947|emb|CAD83942.1| Clp protease [Nitrosomonas europaea ATCC 19718]
          Length = 214

 Score =  284 bits (726), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 118/206 (57%), Positives = 160/206 (77%)

Query: 8   KKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           +   +   LGL+PMV+E + RGER+YDIYSRLL+ERI+F+ G + +  A L+ AQLLFLE
Sbjct: 9   RNGLDTTGLGLIPMVIETSGRGERAYDIYSRLLRERIIFLVGPVTETSANLVIAQLLFLE 68

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           +EN +K+I LYINSPGG+VTAG+A+YDT+QFIKP +ST C+GQAASMG+ LL+AG KG R
Sbjct: 69  SENSEKDIFLYINSPGGLVTAGLAVYDTIQFIKPDVSTLCVGQAASMGAFLLTAGAKGKR 128

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           + LPN+R+++HQP GGF GQASDIE HA++I+ +K RLNEI  K+ G+T + +E+  DRD
Sbjct: 129 YCLPNSRVMIHQPLGGFQGQASDIEIHAKEILALKSRLNEIMAKHTGQTVKAIERDTDRD 188

Query: 188 HIMSASEACDWGVVDKVLMSRIDIEE 213
           + + A  A  +G+VD VL SR   +E
Sbjct: 189 NFLGAEAAVKYGLVDAVLTSREVKQE 214


>gi|161486690|ref|YP_719644.2| ATP-dependent Clp protease proteolytic subunit [Haemophilus somnus
           129PT]
          Length = 193

 Score =  284 bits (726), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 123/193 (63%), Positives = 160/193 (82%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++PMVVEQT+RGERSYDIYSRLLKER++F+TG++ED MA LI AQLLFLEAE+P K+I
Sbjct: 1   MSVIPMVVEQTSRGERSYDIYSRLLKERVIFLTGEVEDRMANLIVAQLLFLEAEDPAKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           ++YINSPGG VTAGMAIYDTMQFIKP + T C+GQA SMG+ LL+ G  G R ALP+AR+
Sbjct: 61  NIYINSPGGSVTAGMAIYDTMQFIKPDVRTLCIGQACSMGAFLLAGGTAGKRAALPHARV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQASDI+ HAQ+I+KIK+ LNE    + G++ E++E+  DRD+ MSA +A
Sbjct: 121 MIHQPLGGFRGQASDIQIHAQEILKIKQTLNERLAFHTGQSIEQIEQDTDRDNFMSAEQA 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD+VL+ R
Sbjct: 181 KLYGLVDEVLIKR 193


>gi|15606541|ref|NP_213921.1| ATP-dependent Clp protease proteolytic subunit [Aquifex aeolicus
           VF5]
 gi|6225158|sp|O67357|CLPP_AQUAE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|2983755|gb|AAC07315.1| ATP-dependent Clp protease proteolytic subunit [Aquifex aeolicus
           VF5]
          Length = 201

 Score =  284 bits (726), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 112/191 (58%), Positives = 152/191 (79%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+V+EQT RGER+YDIYSRLL++RIV +   I+DH+A LI AQLLFLE+++P K+I L
Sbjct: 10  LVPIVIEQTPRGERAYDIYSRLLQDRIVLLGSPIDDHVANLIVAQLLFLESQDPDKDIYL 69

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+AIYDTMQ+IKP + T CMGQAASMG++LL+AG  G R+ALP++RI++
Sbjct: 70  YINSPGGSVTAGLAIYDTMQYIKPDVVTICMGQAASMGAILLAAGAPGKRYALPHSRIMI 129

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DI  HA++I +IK  L +I  K+ G+  +++   ++RD+ MS  EA D
Sbjct: 130 HQPLGGIQGQATDIIIHAEEIKRIKEMLIDILAKHTGQPKDKIANDIERDYFMSPYEAKD 189

Query: 198 WGVVDKVLMSR 208
           +G++DKV+  R
Sbjct: 190 YGLIDKVIEKR 200


>gi|323484460|ref|ZP_08089826.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           symbiosum WAL-14163]
 gi|323692476|ref|ZP_08106710.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           symbiosum WAL-14673]
 gi|323402238|gb|EGA94570.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           symbiosum WAL-14163]
 gi|323503473|gb|EGB19301.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           symbiosum WAL-14673]
          Length = 193

 Score =  284 bits (726), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 110/192 (57%), Positives = 150/192 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+E T+RGERSYDI+SRLLKERI+F+  ++ D  A LI +QLLFLE+E+P K+I
Sbjct: 1   MSLVPYVIESTSRGERSYDIFSRLLKERIIFLGEEVTDTSAGLIVSQLLFLESEDPNKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG V+AG+AIYDTM +IK  +ST C G AASMG+ LL+ G KG RFALPNA +
Sbjct: 61  HLYINSPGGSVSAGLAIYDTMNYIKCDVSTICFGMAASMGAFLLAGGAKGKRFALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I+  A+ I++ K++LNEI   N G+ YE +E+  DRD+ M+A EA
Sbjct: 121 MIHQPSGGAQGQATEIQIVAEKILQTKKKLNEILAANTGQPYEVIERDTDRDNYMTAQEA 180

Query: 196 CDWGVVDKVLMS 207
            ++G++D+V+ S
Sbjct: 181 MEYGLIDRVIAS 192


>gi|149926126|ref|ZP_01914388.1| ATP-dependent Clp protease proteolytic subunit [Limnobacter sp.
           MED105]
 gi|149824944|gb|EDM84156.1| ATP-dependent Clp protease proteolytic subunit [Limnobacter sp.
           MED105]
          Length = 215

 Score =  284 bits (726), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 122/215 (56%), Positives = 157/215 (73%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           M+         E      VPMV+EQ+ RGER+YDIYSRLLKER++F+ G I D MA +I 
Sbjct: 1   MTNNMNNSGALETQGNMYVPMVIEQSGRGERAYDIYSRLLKERVIFLVGPINDQMANVIV 60

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLE+ENP K+I+LYINSPGG V+AGMAIYDTMQFIKP +ST C G AASMG+ LLS
Sbjct: 61  AQMLFLESENPDKDIALYINSPGGSVSAGMAIYDTMQFIKPDVSTLCTGLAASMGAFLLS 120

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           +G KG RF+LPN+RI++HQP GG  GQASDIE HA++I+ ++ +LN I   N GKT EE+
Sbjct: 121 SGTKGKRFSLPNSRIMIHQPLGGVQGQASDIEIHAKEILYLREKLNGILADNTGKTIEEI 180

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
            +  DRD+ M A  A ++G++D VL  R+   +K 
Sbjct: 181 ARDTDRDNFMGADSAKEYGLIDDVLKHRVPPADKK 215


>gi|256823172|ref|YP_003147135.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Kangiella
           koreensis DSM 16069]
 gi|256796711|gb|ACV27367.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Kangiella
           koreensis DSM 16069]
          Length = 205

 Score =  284 bits (726), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 127/198 (64%), Positives = 161/198 (81%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E    GL+PMVVEQT+RGERSYDIYSRLLKER++F  GQ+ED+MA  I AQ+LFLE++NP
Sbjct: 6   ETQASGLIPMVVEQTSRGERSYDIYSRLLKERVIFCVGQVEDYMANSIVAQMLFLESDNP 65

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+I LYINSPGGVVTAG++IYDTMQFI+P +ST C+GQAASMG+LLL+ G KG R  LP
Sbjct: 66  DKDIYLYINSPGGVVTAGLSIYDTMQFIRPDVSTVCVGQAASMGALLLTGGAKGKRHTLP 125

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+R+++HQP GGF GQASDI  HAQ+I ++K RLN I   +CGKT EEVE+  DRD+ ++
Sbjct: 126 NSRMMIHQPLGGFQGQASDIAIHAQEITELKHRLNSIMAHHCGKTVEEVERDTDRDNFLT 185

Query: 192 ASEACDWGVVDKVLMSRI 209
           A EA ++G+VD ++ SR 
Sbjct: 186 ADEAVEYGLVDSIISSRK 203


>gi|319898776|ref|YP_004158869.1| ATP-dependent Clp protease, proteolytic subunit [Bartonella
           clarridgeiae 73]
 gi|319402740|emb|CBI76287.1| ATP-dependent Clp protease, proteolytic subunit [Bartonella
           clarridgeiae 73]
          Length = 210

 Score =  284 bits (726), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 150/207 (72%), Positives = 180/207 (86%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           D     L LVPMVVEQTNRGER+YDI+SRLLKERI+F+ G +ED+MA L+CAQLLFLEAE
Sbjct: 3   DPIKTALSLVPMVVEQTNRGERAYDIFSRLLKERIIFINGPVEDNMAMLVCAQLLFLEAE 62

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP+KEI+LYINSPGGVVT+GMAIYDTMQFI+P +ST CMGQAASMGSLLL+AG  G RFA
Sbjct: 63  NPKKEINLYINSPGGVVTSGMAIYDTMQFIRPSVSTLCMGQAASMGSLLLTAGATGRRFA 122

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPNARI++HQPSGGF GQASDIERHAQDIVK+KRRLNEIYV++ G++YE +EKTLDRDH 
Sbjct: 123 LPNARIMVHQPSGGFQGQASDIERHAQDIVKMKRRLNEIYVQHTGQSYEVIEKTLDRDHF 182

Query: 190 MSASEACDWGVVDKVLMSRIDIEEKSK 216
           M+A E+  +G++D V+  R + E++ K
Sbjct: 183 MTAEESKQFGLIDDVIQYRAETEKEEK 209


>gi|49474139|ref|YP_032181.1| ATP-dependent Clp protease proteolytic subunit [Bartonella quintana
           str. Toulouse]
 gi|67460275|sp|Q6G178|CLPP_BARQU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|49239643|emb|CAF26003.1| ATP-dependent clp protease proteolytic subunit [Bartonella quintana
           str. Toulouse]
          Length = 210

 Score =  284 bits (726), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 150/207 (72%), Positives = 179/207 (86%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           +     L LVPMV+EQTNRGER+YDI+SRLLKERI+F+ G +ED MA L+CAQLLFLEAE
Sbjct: 3   NPMKTALSLVPMVIEQTNRGERAYDIFSRLLKERIIFINGPVEDSMAMLVCAQLLFLEAE 62

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP+KEISLYINSPGGVVT+GMAIYDTMQFI+PP+ST CMGQAASMGSLLL+AG KG RF 
Sbjct: 63  NPKKEISLYINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGAKGHRFT 122

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPNARI++HQPSGGF GQASDIERHAQDI+K+KRRLNEIYV++ G+ YE +E+TLDRDH 
Sbjct: 123 LPNARIMVHQPSGGFQGQASDIERHAQDIIKMKRRLNEIYVQHTGQDYEVIERTLDRDHF 182

Query: 190 MSASEACDWGVVDKVLMSRIDIEEKSK 216
           M+A EA  +G+VD V+  R + E++ K
Sbjct: 183 MTAEEAKQFGLVDDVIQYRAETEKEEK 209


>gi|261401252|ref|ZP_05987377.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
           lactamica ATCC 23970]
 gi|269208735|gb|EEZ75190.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
           lactamica ATCC 23970]
          Length = 206

 Score =  284 bits (726), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 121/196 (61%), Positives = 157/196 (80%), Gaps = 2/196 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ+ RGER++DIYSRLLKERIVF+ G + D  A L+ AQLLFLE+ENP K+I  
Sbjct: 9   LVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFF 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM+IYDTM FIKP +ST C+GQAASMG+ LLSAG KG RFALPN+RI++
Sbjct: 69  YINSPGGSVTAGMSIYDTMNFIKPDVSTLCLGQAASMGAFLLSAGGKGKRFALPNSRIMI 128

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASDIE HA++++KIK +LN +  K+C +   ++E+  DRD+ MSA EA
Sbjct: 129 HQPLISGGLGGQASDIEIHARELLKIKEKLNRLMAKHCDRDLADLERDTDRDNFMSAEEA 188

Query: 196 CDWGVVDKVLMSRIDI 211
            ++G++D+VL +R+ +
Sbjct: 189 KEYGLIDQVLENRVSL 204


>gi|27467469|ref|NP_764106.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           epidermidis ATCC 12228]
 gi|57866412|ref|YP_188029.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus epidermidis RP62A]
 gi|242242138|ref|ZP_04796583.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           epidermidis W23144]
 gi|251810202|ref|ZP_04824675.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|282875651|ref|ZP_06284522.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus epidermidis SK135]
 gi|293368230|ref|ZP_06614859.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|38257586|sp|Q8CTE0|CLPP_STAES RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|67460168|sp|Q5HQW0|CLPP_STAEQ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|27315012|gb|AAO04148.1|AE016745_247 ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           epidermidis ATCC 12228]
 gi|57637070|gb|AAW53858.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus epidermidis RP62A]
 gi|242234451|gb|EES36763.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           epidermidis W23144]
 gi|251806254|gb|EES58911.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|281295678|gb|EFA88201.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus epidermidis SK135]
 gi|291317653|gb|EFE58070.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|319401155|gb|EFV89370.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus epidermidis FRI909]
 gi|329723271|gb|EGG59801.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Staphylococcus epidermidis VCU144]
 gi|329736698|gb|EGG72963.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Staphylococcus epidermidis VCU028]
 gi|329738003|gb|EGG74227.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Staphylococcus epidermidis VCU045]
          Length = 194

 Score =  284 bits (726), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 104/194 (53%), Positives = 149/194 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+E TNRGER+YDIYSRLLK+RI+ +  QI+D++A  I +QLLFL+A++ +K+I
Sbjct: 1   MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG AIYDT+Q IKP + T C+G AASMGS LL+AG KG RFALPNA +
Sbjct: 61  YLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A  I+K + +LN I  +  G++ E++++  DRD+ ++A+EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQQDTDRDNFLTAAEA 180

Query: 196 CDWGVVDKVLMSRI 209
            ++G++D+V+    
Sbjct: 181 KEYGLIDEVMEPEK 194


>gi|125582984|gb|EAZ23915.1| hypothetical protein OsJ_07636 [Oryza sativa Japonica Group]
          Length = 318

 Score =  284 bits (726), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 119/200 (59%), Positives = 159/200 (79%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
            S     GLVPMV+E T+RGER+YDI+SRLLKERIV + G I D  A+L+ AQLLFLE+E
Sbjct: 65  YSSHQAFGLVPMVIETTSRGERAYDIFSRLLKERIVLIHGPIADETASLVVAQLLFLESE 124

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP K + LYINSPGGVVTAG+AIYDTMQ+I+ P++T C+GQAASMGSLLL+AG +G R A
Sbjct: 125 NPLKPVHLYINSPGGVVTAGLAIYDTMQYIRCPVTTLCIGQAASMGSLLLAAGARGERRA 184

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPNAR+++HQPSGG  GQA+DI   A++I+K++ RLN+IY K+ G+  +++E+ ++RD  
Sbjct: 185 LPNARVMIHQPSGGAQGQATDIAIQAKEILKLRDRLNKIYQKHTGQEIDKIEQCMERDLF 244

Query: 190 MSASEACDWGVVDKVLMSRI 209
           M   EA DWG++D+V+ +R 
Sbjct: 245 MDPEEARDWGLIDEVIENRP 264


>gi|125540417|gb|EAY86812.1| hypothetical protein OsI_08189 [Oryza sativa Indica Group]
          Length = 318

 Score =  284 bits (726), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 119/200 (59%), Positives = 159/200 (79%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
            S     GLVPMV+E T+RGER+YDI+SRLLKERIV + G I D  A+L+ AQLLFLE+E
Sbjct: 65  YSSHQAFGLVPMVIETTSRGERAYDIFSRLLKERIVLIHGPIADETASLVVAQLLFLESE 124

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP K + LYINSPGGVVTAG+AIYDTMQ+I+ P++T C+GQAASMGSLLL+AG +G R A
Sbjct: 125 NPLKPVHLYINSPGGVVTAGLAIYDTMQYIRCPVTTLCIGQAASMGSLLLAAGARGERRA 184

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPNAR+++HQPSGG  GQA+DI   A++I+K++ RLN+IY K+ G+  +++E+ ++RD  
Sbjct: 185 LPNARVMIHQPSGGAQGQATDIAIQAKEILKLRDRLNKIYQKHTGQEIDKIEQCMERDLF 244

Query: 190 MSASEACDWGVVDKVLMSRI 209
           M   EA DWG++D+V+ +R 
Sbjct: 245 MDPEEARDWGLIDEVIENRP 264


>gi|86357224|ref|YP_469116.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli CFN
           42]
 gi|190891272|ref|YP_001977814.1| endopeptidase Clp protein, subunit 2 [Rhizobium etli CIAT 652]
 gi|209548850|ref|YP_002280767.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|116243117|sp|Q2K9U7|CLPP2_RHIEC RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|86281326|gb|ABC90389.1| endopeptidase Clp, subunit 2 protein [Rhizobium etli CFN 42]
 gi|190696551|gb|ACE90636.1| endopeptidase Clp protein, subunit 2 [Rhizobium etli CIAT 652]
 gi|209534606|gb|ACI54541.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|327188463|gb|EGE55677.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli
           CNPAF512]
          Length = 209

 Score =  284 bits (726), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 160/204 (78%), Positives = 185/204 (90%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           ++  D  + LVPMVVEQTNRGERSYDIYSRLLKERI+F+TG +EDHMATL+CAQLLFLEA
Sbjct: 2   RNPVDTAMALVPMVVEQTNRGERSYDIYSRLLKERIIFLTGAVEDHMATLVCAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI+LYINSPGGVVTAGMAIYDTMQFIKP +ST C+GQAASMGSLLL+AG K MRF
Sbjct: 62  ENPKKEIALYINSPGGVVTAGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLAAGHKDMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           A PN+RI++HQPSGGF GQASDIERHA+DI+K+KRRLNE+YVK+ G+TYEEVEKTLDRDH
Sbjct: 122 ATPNSRIMVHQPSGGFQGQASDIERHARDILKMKRRLNEVYVKHTGRTYEEVEKTLDRDH 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIE 212
            M A EA  WGV+DKVL SR+++E
Sbjct: 182 FMDADEAQGWGVIDKVLTSRLEME 205


>gi|150388889|ref|YP_001318938.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Alkaliphilus
           metalliredigens QYMF]
 gi|167008644|sp|A6TM61|CLPP_ALKMQ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|149948751|gb|ABR47279.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Alkaliphilus
           metalliredigens QYMF]
          Length = 194

 Score =  283 bits (725), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 118/194 (60%), Positives = 152/194 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQT+RGERSYDI+SRLLKERI+F+  +I D  A+L+ AQLLFLEAE+P K+I
Sbjct: 1   MALVPVVVEQTSRGERSYDIFSRLLKERIIFLGDEINDVTASLLVAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG +TAGMAIYDTM +IKP +ST C+G AASMG+ LL+AG KG RFALPNA +
Sbjct: 61  QIYINSPGGSITAGMAIYDTMNYIKPDVSTICVGMAASMGAFLLAAGAKGKRFALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA DI  HA+ IVK++  LN+I V+  G+  E V+K  DRD  M A EA
Sbjct: 121 MIHQPLGGTRGQAEDIRIHAERIVKLRDTLNKILVERTGQPLERVQKDTDRDFFMEAKEA 180

Query: 196 CDWGVVDKVLMSRI 209
            ++G++D+V+ SR 
Sbjct: 181 KEYGIIDEVISSRK 194


>gi|49475380|ref|YP_033421.1| ATP-dependent Clp protease proteolytic subunit [Bartonella henselae
           str. Houston-1]
 gi|67460276|sp|Q6G3Z3|CLPP_BARHE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|49238186|emb|CAF27396.1| ATP-dependent clp protease proteolytic subunit [Bartonella henselae
           str. Houston-1]
          Length = 210

 Score =  283 bits (725), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 149/207 (71%), Positives = 179/207 (86%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           D     L LVPMV+EQTNRGER+YDI+SRLLKERI+F+ G +ED MA L+CAQLLFLEAE
Sbjct: 3   DPIKTALSLVPMVIEQTNRGERAYDIFSRLLKERIIFINGPVEDGMAMLVCAQLLFLEAE 62

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP+KEISLYINSPGGVVT+GMAIYDTMQFI+PP+ST CMGQAASMGSLLL+AG KG RF 
Sbjct: 63  NPKKEISLYINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGAKGHRFT 122

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPNARI++HQPSGGF GQASDIERHAQDI+K+K+RLNEIYV++ G+ Y+ +E+TLDRDH 
Sbjct: 123 LPNARIMVHQPSGGFQGQASDIERHAQDIIKMKQRLNEIYVQHTGQNYDVIERTLDRDHF 182

Query: 190 MSASEACDWGVVDKVLMSRIDIEEKSK 216
           M+A EA  +G+VD V+  R + E++ K
Sbjct: 183 MTAEEAKQFGLVDDVIQYRAETEKEEK 209


>gi|116747551|ref|YP_844238.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Syntrophobacter fumaroxidans MPOB]
 gi|166214718|sp|A0LEF1|CLPP_SYNFM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|116696615|gb|ABK15803.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Syntrophobacter fumaroxidans MPOB]
          Length = 202

 Score =  283 bits (725), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 112/196 (57%), Positives = 158/196 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P+VVEQ++RGER++DIYSRLL++RI+F+   I D +A +I AQLLFLE+E+P K+I
Sbjct: 1   MSLIPIVVEQSSRGERAFDIYSRLLRDRIIFLGTAITDEVANVIIAQLLFLESEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG+VTAG+AIYDTMQFIKP +ST CMGQAASM ++LL+AG KG R+ALP+ RI
Sbjct: 61  HFYINSPGGLVTAGLAIYDTMQFIKPNVSTLCMGQAASMAAILLAAGVKGKRYALPHVRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +LHQP GGF GQA+D+E  A++I+K++  LN+I V++ G+  E++++  DRD  MS  +A
Sbjct: 121 MLHQPMGGFQGQATDVEIQAKEILKLREELNDILVRHTGRPVEQIQRDTDRDFYMSGEQA 180

Query: 196 CDWGVVDKVLMSRIDI 211
            ++G+VD +  SR+ I
Sbjct: 181 REYGMVDHIFTSRLSI 196


>gi|115447465|ref|NP_001047512.1| Os02g0634500 [Oryza sativa Japonica Group]
 gi|49388184|dbj|BAD25310.1| unknown protein [Oryza sativa Japonica Group]
 gi|113537043|dbj|BAF09426.1| Os02g0634500 [Oryza sativa Japonica Group]
 gi|215692767|dbj|BAG88235.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 298

 Score =  283 bits (725), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 119/200 (59%), Positives = 159/200 (79%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
            S     GLVPMV+E T+RGER+YDI+SRLLKERIV + G I D  A+L+ AQLLFLE+E
Sbjct: 65  YSSHQAFGLVPMVIETTSRGERAYDIFSRLLKERIVLIHGPIADETASLVVAQLLFLESE 124

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP K + LYINSPGGVVTAG+AIYDTMQ+I+ P++T C+GQAASMGSLLL+AG +G R A
Sbjct: 125 NPLKPVHLYINSPGGVVTAGLAIYDTMQYIRCPVTTLCIGQAASMGSLLLAAGARGERRA 184

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPNAR+++HQPSGG  GQA+DI   A++I+K++ RLN+IY K+ G+  +++E+ ++RD  
Sbjct: 185 LPNARVMIHQPSGGAQGQATDIAIQAKEILKLRDRLNKIYQKHTGQEIDKIEQCMERDLF 244

Query: 190 MSASEACDWGVVDKVLMSRI 209
           M   EA DWG++D+V+ +R 
Sbjct: 245 MDPEEARDWGLIDEVIENRP 264


>gi|148259928|ref|YP_001234055.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acidiphilium
           cryptum JF-5]
 gi|146401609|gb|ABQ30136.1| ATP-dependent Clp protease proteolytic subunit ClpP [Acidiphilium
           cryptum JF-5]
          Length = 211

 Score =  283 bits (725), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 131/208 (62%), Positives = 173/208 (83%), Gaps = 1/208 (0%)

Query: 8   KKDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
            +D  ++++  LVPMVVEQT RGERSYDI+SRLLKERI+F+TG + D + +LI AQLLFL
Sbjct: 4   DRDPTEIYMNSLVPMVVEQTARGERSYDIFSRLLKERIIFLTGPVYDQVGSLIAAQLLFL 63

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E+ENP KEI+ YINSPGGVV+AG+AIYDTMQ+IK P+ST C+GQAASMGSLLL+AGEKG 
Sbjct: 64  ESENPSKEIAFYINSPGGVVSAGLAIYDTMQYIKSPVSTVCIGQAASMGSLLLAAGEKGK 123

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           RFALPN+RI++HQPSGG  GQASDIE  A++I+ ++RRLN+IYV + G++ E +E+ L+R
Sbjct: 124 RFALPNSRIMVHQPSGGAQGQASDIEIQAREILTLRRRLNDIYVTHTGQSLEAIEQALER 183

Query: 187 DHIMSASEACDWGVVDKVLMSRIDIEEK 214
           D  MSA+EA ++G+VD+V+  +   + K
Sbjct: 184 DRFMSANEAQEFGLVDEVVEKKPAKDSK 211


>gi|119713091|gb|ABL97160.1| ATP-dependent Clp protease proteolytic subunit [uncultured marine
           bacterium EB0_49D07]
          Length = 204

 Score =  283 bits (725), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 124/203 (61%), Positives = 170/203 (83%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E +  GLVPMVVEQT RGER++DIYSRLLKERI+F+TG I+D+++ L+ AQLLFLE+ENP
Sbjct: 2   ETINSGLVPMVVEQTPRGERAFDIYSRLLKERIIFLTGPIDDYISNLVVAQLLFLESENP 61

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+IS+YINSPGGV+T+G+AIYDTMQFI P +ST C+GQAASMGSLLL+ G +G RFAL 
Sbjct: 62  EKDISIYINSPGGVITSGLAIYDTMQFIAPEVSTLCIGQAASMGSLLLAGGAEGKRFALT 121

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+RI++HQP GGFSGQASD E HA++++ +K+++NEI  K+ GKT ++VE+  DRD+ ++
Sbjct: 122 NSRIMIHQPLGGFSGQASDFEIHAKEMLLVKQKVNEILSKHTGKTLKKVEQDTDRDNFLN 181

Query: 192 ASEACDWGVVDKVLMSRIDIEEK 214
           A+EA  +G++D++L  R +   K
Sbjct: 182 ATEAVTYGIIDEILEKRPETNGK 204


>gi|253575504|ref|ZP_04852841.1| clp protease [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251845151|gb|EES73162.1| clp protease [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 198

 Score =  283 bits (725), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 111/192 (57%), Positives = 150/192 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +PMVVEQ+NRGER+YDIYSRLLK+RI+F+  Q+ D +A  I AQ+LFL+AE+P K+I
Sbjct: 1   MSYIPMVVEQSNRGERAYDIYSRLLKDRIIFLGSQVNDVVANSIIAQMLFLDAEDPTKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +TAGMAIYDTMQFIK  +ST C+G AASMG+ LL+AG  G R+ALPN+ I
Sbjct: 61  HLYINSPGGSITAGMAIYDTMQFIKADVSTICVGLAASMGAFLLNAGAPGKRYALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DIE  A+ I+K++ +LN I  +  G+  E +EK  DRD+ MSA+EA
Sbjct: 121 MIHQPLGGAEGQATDIEIRARRILKMRDKLNRILSERTGQPLERIEKDTDRDYFMSAAEA 180

Query: 196 CDWGVVDKVLMS 207
            ++G++D+V+  
Sbjct: 181 KEYGLIDQVIEK 192


>gi|148381180|ref|YP_001255721.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum A str. ATCC 3502]
 gi|153933152|ref|YP_001385555.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum A str. ATCC 19397]
 gi|153934525|ref|YP_001388961.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum A str. Hall]
 gi|153939192|ref|YP_001392582.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum F str. Langeland]
 gi|168179119|ref|ZP_02613783.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum NCTC 2916]
 gi|168183548|ref|ZP_02618212.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum Bf]
 gi|170754567|ref|YP_001782870.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum B1 str. Okra]
 gi|226950659|ref|YP_002805750.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum A2 str. Kyoto]
 gi|237796687|ref|YP_002864239.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum Ba4 str. 657]
 gi|166201814|sp|A7FYI2|CLPP_CLOB1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166201815|sp|A5I6W1|CLPP_CLOBH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166201816|sp|A7GIH2|CLPP_CLOBL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706445|sp|B1IND7|CLPP_CLOBK RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|254763786|sp|C1FLA6|CLPP_CLOBJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|148290664|emb|CAL84793.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           botulinum A str. ATCC 3502]
 gi|152929196|gb|ABS34696.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum A str. ATCC 19397]
 gi|152930439|gb|ABS35938.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum A str. Hall]
 gi|152935088|gb|ABS40586.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum F str. Langeland]
 gi|169119779|gb|ACA43615.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum B1 str. Okra]
 gi|182670165|gb|EDT82141.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum NCTC 2916]
 gi|182673367|gb|EDT85328.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum Bf]
 gi|226842960|gb|ACO85626.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum A2 str. Kyoto]
 gi|229261301|gb|ACQ52334.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum Ba4 str. 657]
 gi|295320566|gb|ADG00944.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum F str. 230613]
 gi|322807545|emb|CBZ05120.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           botulinum H04402 065]
          Length = 194

 Score =  283 bits (725), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 116/194 (59%), Positives = 155/194 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQTNRGERSYDIYSRLLK+RI+ ++ ++ D  A+LI AQLLFLEAE+P K+I
Sbjct: 1   MSLVPVVVEQTNRGERSYDIYSRLLKDRIIMLSEEVNDTTASLIVAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +T+GMAIYDTMQ+IKP +ST C+G AASMG+ LL+AG KG R+ALPN+ +
Sbjct: 61  HLYINSPGGSITSGMAIYDTMQYIKPDVSTICVGMAASMGAFLLAAGAKGKRYALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DI  HA+ I+K+K++LN I     GK  E+VE   +RDH +SA EA
Sbjct: 121 MIHQPLGGFRGQATDIGIHAERILKMKKKLNTILSDRTGKPLEQVELDTERDHFLSAEEA 180

Query: 196 CDWGVVDKVLMSRI 209
            ++G++D+V+  + 
Sbjct: 181 KEYGLIDEVIDKKK 194


>gi|293375439|ref|ZP_06621720.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Turicibacter
           sanguinis PC909]
 gi|325844477|ref|ZP_08168204.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Turicibacter sp. HGF1]
 gi|292645992|gb|EFF64021.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Turicibacter
           sanguinis PC909]
 gi|325489151|gb|EGC91535.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Turicibacter sp. HGF1]
          Length = 199

 Score =  283 bits (725), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 105/196 (53%), Positives = 149/196 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQT  GER+YDIYSRLLK+RI+ ++G+I DH A ++ AQLLFL AE+P K+I++
Sbjct: 4   LVPTVIEQTAHGERAYDIYSRLLKDRIIMLSGEINDHTANIVVAQLLFLAAEDPDKDINI 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+AI+DTM +IK  +ST C+G AASMG+ LL+AG KG R+ LPN+ +++
Sbjct: 64  YINSPGGSVTAGLAIFDTMNYIKCDVSTICVGMAASMGAFLLTAGTKGKRYVLPNSEVMI 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA++I   A+ I+K + RLN+I  +  G+  E++E+  +RD+ MSA EA  
Sbjct: 124 HQPLGGAQGQATEIAIAAKHILKTRDRLNKILAEQTGQPLEKIEQDTERDNFMSADEAVA 183

Query: 198 WGVVDKVLMSRIDIEE 213
           +G+VD+V+    D+ +
Sbjct: 184 YGLVDQVVTRPTDVTK 199


>gi|297538721|ref|YP_003674490.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylotenera
           sp. 301]
 gi|297258068|gb|ADI29913.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylotenera
           sp. 301]
          Length = 219

 Score =  283 bits (725), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 122/207 (58%), Positives = 166/207 (80%)

Query: 4   EGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQL 63
           +  A+ D     LG +PMVVEQ+ RGERSYDIYSRLLKER++F+ G + D  A L+ AQL
Sbjct: 11  QPQAELDISPQGLGYIPMVVEQSGRGERSYDIYSRLLKERVIFLVGPVNDMSANLVVAQL 70

Query: 64  LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           LFLEAENP K+ISLYINSPGG VTAGM+IYDTMQFIK  +ST C+GQAASMG+ LL+AG 
Sbjct: 71  LFLEAENPDKDISLYINSPGGSVTAGMSIYDTMQFIKADVSTLCIGQAASMGAFLLAAGA 130

Query: 124 KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
           KG RF+LPN+R+++HQPSGGF GQ++DIE HA++I+ ++ +LN+I   + GKT  E+++ 
Sbjct: 131 KGKRFSLPNSRVMIHQPSGGFQGQSTDIEIHAKEILYLRAKLNDILAHHTGKTAAEIDRD 190

Query: 184 LDRDHIMSASEACDWGVVDKVLMSRID 210
            +RD+ MSA+++ ++G++DKV+ SR +
Sbjct: 191 TERDNFMSATQSVEYGMIDKVIESRTE 217


>gi|158522703|ref|YP_001530573.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfococcus
           oleovorans Hxd3]
 gi|259585950|sp|A8ZXB7|CLPP_DESOH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|158511529|gb|ABW68496.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfococcus
           oleovorans Hxd3]
          Length = 205

 Score =  283 bits (725), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 114/201 (56%), Positives = 154/201 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+PMV+EQT+RGER++DIYSRLLK+RIVF+   I+D  A L+ AQLLFLE+E+P K+I
Sbjct: 1   MPLIPMVIEQTSRGERAFDIYSRLLKDRIVFIGSAIDDETANLLIAQLLFLESEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           + YINSPGG V+AGMAIYDTMQ+IK  I+T C+G AASMG+ LL+AG KG RF+LPN+RI
Sbjct: 61  NFYINSPGGKVSAGMAIYDTMQYIKSDIATVCIGHAASMGAFLLAAGAKGKRFSLPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDI   A++I+++K  LN+I   + GK  E+++   DRD  MS  EA
Sbjct: 121 MIHQPMGGAQGQASDIAIQAKEILRMKDILNQILAHHTGKPLEQIQVDTDRDFFMSGEEA 180

Query: 196 CDWGVVDKVLMSRIDIEEKSK 216
             +G+VD V+  R D+++  K
Sbjct: 181 KAYGIVDHVITDRSDLDKLEK 201


>gi|116243161|sp|Q1RJH2|CLPP_RICBR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
          Length = 227

 Score =  283 bits (725), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 125/204 (61%), Positives = 165/204 (80%)

Query: 5   GCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLL 64
              +   E   +  VP+V+EQT+RGER+YDIYSRLLKERI+FV G IEDHMA LI AQLL
Sbjct: 12  PSNENFKEKYPMSYVPIVIEQTSRGERAYDIYSRLLKERIIFVCGPIEDHMANLITAQLL 71

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           FLEAENP+K+I +YINSPGGVVTAG+AIYDTMQ+IKP ++T C+GQA SMGS LL  GEK
Sbjct: 72  FLEAENPEKDIYMYINSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSFLLCGGEK 131

Query: 125 GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
           GMR++LP++R+++HQPSGG+ GQA+DIE HAQ+ +KIK+ LN +Y K+ G+  + VEK++
Sbjct: 132 GMRYSLPHSRVMIHQPSGGYRGQATDIEIHAQETLKIKKILNSLYSKHTGQDVKHVEKSM 191

Query: 185 DRDHIMSASEACDWGVVDKVLMSR 208
           +RD+ MS  EA  +G++DK++  R
Sbjct: 192 ERDNFMSPEEAKKFGIIDKIITHR 215


>gi|167746334|ref|ZP_02418461.1| hypothetical protein ANACAC_01043 [Anaerostipes caccae DSM 14662]
 gi|317470744|ref|ZP_07930129.1| Clp protease [Anaerostipes sp. 3_2_56FAA]
 gi|167654327|gb|EDR98456.1| hypothetical protein ANACAC_01043 [Anaerostipes caccae DSM 14662]
 gi|316901879|gb|EFV23808.1| Clp protease [Anaerostipes sp. 3_2_56FAA]
          Length = 196

 Score =  283 bits (725), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 117/195 (60%), Positives = 151/195 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLLKERI+F+  ++ D  A+LI +QLLFLEAE+P+K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLKERIIFLGEEVTDVSASLIVSQLLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG VTAGMAIYDTM FIK  +ST CMG AASMGS LLS G KG R ALPNA I
Sbjct: 61  SLYINSPGGSVTAGMAIYDTMNFIKCDVSTICMGMAASMGSFLLSGGAKGKRMALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++I+  A+ I++ K+RLN I  +N GK  E +E+  DRD+ ++A EA
Sbjct: 121 MIHQPMGGAQGQATEIQIAAEHILQTKKRLNRILSENTGKPLEVIERDTDRDNWLTAEEA 180

Query: 196 CDWGVVDKVLMSRID 210
            ++G++D V   + +
Sbjct: 181 VEYGLIDAVFDKKRE 195


>gi|87121308|ref|ZP_01077198.1| putative ATP-dependent Clp protease, proteolytic subunit
           [Marinomonas sp. MED121]
 gi|86163465|gb|EAQ64740.1| putative ATP-dependent Clp protease, proteolytic subunit
           [Marinomonas sp. MED121]
          Length = 210

 Score =  283 bits (725), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 124/193 (64%), Positives = 157/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
            GLVPMV+EQT RGERS+DIYSRLLKER++F+ GQ+EDHMA L+ AQLLFLE+ENP K+I
Sbjct: 16  AGLVPMVIEQTARGERSFDIYSRLLKERVIFLVGQVEDHMANLVVAQLLFLESENPDKDI 75

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQAASMG+LLL+AG  G R+ LPN+R+
Sbjct: 76  HLYINSPGGSVTAGMSIYDTMQFIKPDVSTMCIGQAASMGALLLTAGAAGKRYCLPNSRV 135

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG+ GQASDIE H ++I+ IK RLNEI   + GK  EEV +  DRD+ M  + A
Sbjct: 136 MIHQPLGGYQGQASDIEIHTREILSIKHRLNEIISFHTGKPIEEVAEDTDRDNFMDPTAA 195

Query: 196 CDWGVVDKVLMSR 208
            ++G++D +L+ R
Sbjct: 196 KEYGLIDDILLKR 208


>gi|222100864|ref|YP_002535432.1| ATP-dependent Clp protease proteolytic subunit [Thermotoga
           neapolitana DSM 4359]
 gi|221573254|gb|ACM24066.1| ATP-dependent Clp protease proteolytic subunit [Thermotoga
           neapolitana DSM 4359]
          Length = 200

 Score =  283 bits (725), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 115/190 (60%), Positives = 150/190 (78%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP+VVE T R ER+YDI+SRLLK+RIVF+   I+DH+A L+ AQLLFLEAE+P K++ LY
Sbjct: 11  VPIVVESTGRYERAYDIFSRLLKDRIVFLGSPIDDHVANLVIAQLLFLEAEDPDKDVYLY 70

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDTMQ+IK  +ST C+GQAASM ++LL+AG KG R+ALPNARI++H
Sbjct: 71  INSPGGSVTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGTKGKRYALPNARIMIH 130

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  G A D+E   +++++IK  LN I  K+ G+  E++EK  DRD  MSA EA ++
Sbjct: 131 QPLGGAEGPAKDVEIITRELLRIKDLLNRILSKHTGQPIEKIEKDTDRDFFMSAEEAKEY 190

Query: 199 GVVDKVLMSR 208
           G+VDKV+ SR
Sbjct: 191 GIVDKVVSSR 200


>gi|21230439|ref|NP_636356.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|66769567|ref|YP_244329.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
           campestris pv. campestris str. 8004]
 gi|25008306|sp|Q8PBY6|CLPP_XANCP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|81304478|sp|Q4URL4|CLPP_XANC8 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|21112001|gb|AAM40280.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|66574899|gb|AAY50309.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
           campestris pv. campestris str. 8004]
          Length = 208

 Score =  283 bits (725), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 123/195 (63%), Positives = 163/195 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           L LVPMVVEQT+RGER+YDIYSRLLKER++F+ G I+DHMA +I AQLLFLEA+NP+K+I
Sbjct: 8   LNLVPMVVEQTSRGERAYDIYSRLLKERLIFLVGPIDDHMANVIVAQLLFLEADNPEKDI 67

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGGVVTAGMAIYDTMQ+IKP +ST C+GQAASMG+LLL++G  G R+ALPN+R+
Sbjct: 68  SIYINSPGGVVTAGMAIYDTMQYIKPDVSTICVGQAASMGALLLASGAAGKRYALPNSRV 127

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DI+ HA++I+ ++ RLNEI  K+ G++ E + +  +RD+  SA +A
Sbjct: 128 MIHQPLGGFQGQATDIDIHAREILTLRSRLNEILAKHTGQSLETIARDTERDNFKSAVDA 187

Query: 196 CDWGVVDKVLMSRID 210
             +G+VD VL  R +
Sbjct: 188 QAYGLVDHVLERRPE 202


>gi|289551370|ref|YP_003472274.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           lugdunensis HKU09-01]
 gi|315658877|ref|ZP_07911744.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           lugdunensis M23590]
 gi|289180901|gb|ADC88146.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           lugdunensis HKU09-01]
 gi|315496001|gb|EFU84329.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           lugdunensis M23590]
          Length = 195

 Score =  283 bits (725), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 104/195 (53%), Positives = 146/195 (74%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+E TNRGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL+A++ +K+I
Sbjct: 1   MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLQAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG AIYDT+Q IKP + T C+G AASMGS LL+AG KG RFALPNA +
Sbjct: 61  YLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A  I+K + +LN I  +  G++ E+++K  DRD+ ++A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAANHILKTREKLNRILAERTGQSIEQIQKDTDRDNFLTAEEA 180

Query: 196 CDWGVVDKVLMSRID 210
             +G++D+V+     
Sbjct: 181 KAYGLIDEVMEPEDK 195


>gi|330684877|gb|EGG96562.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Staphylococcus epidermidis VCU121]
          Length = 196

 Score =  283 bits (725), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 104/191 (54%), Positives = 148/191 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+E TNRGER+YDIYSRLLK+RI+ +  QI+D++A  I +QLLFL+A++ +K+I
Sbjct: 1   MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG AIYDT+Q IKP + T C+G AASMGS LL+AG KG R+ALPNA +
Sbjct: 61  YLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRYALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A  I+K + +LN I+ +  G++ E++++  DRD+ ++A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAANHILKTREKLNRIFSERTGQSIEKIQQDTDRDNFLTAEEA 180

Query: 196 CDWGVVDKVLM 206
             +G+VD+V+ 
Sbjct: 181 KAYGLVDEVME 191


>gi|222150769|ref|YP_002559922.1| ATP-dependent protease proteolytic subunit ClpP [Macrococcus
           caseolyticus JCSC5402]
 gi|254763793|sp|B9EAG5|CLPP_MACCJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|222119891|dbj|BAH17226.1| ATP-dependent protease proteolytic subunit ClpP [Macrococcus
           caseolyticus JCSC5402]
          Length = 194

 Score =  283 bits (725), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 107/190 (56%), Positives = 147/190 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+E TNRGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL+A++ +K+I
Sbjct: 1   MNLIPTVIESTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLQAQDAEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMAIYDTMQ IKP + T C+G AASMGS LL+AG KG RFALPNA +
Sbjct: 61  YLYINSPGGSVTAGMAIYDTMQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K + +LN I  +  G+  E++EK  DRD+ ++A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAARHILKTREKLNRILAERTGQPIEKIEKDTDRDNFLTADEA 180

Query: 196 CDWGVVDKVL 205
             +G++D+V+
Sbjct: 181 KAYGLIDEVM 190


>gi|113474441|ref|YP_720502.1| ATP-dependent Clp protease proteolytic subunit ClpP [Trichodesmium
           erythraeum IMS101]
 gi|110165489|gb|ABG50029.1| ATP-dependent Clp protease proteolytic subunit ClpP [Trichodesmium
           erythraeum IMS101]
          Length = 231

 Score =  283 bits (725), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 105/205 (51%), Positives = 150/205 (73%)

Query: 3   FEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQ 62
               +K         +VPMVVEQ+  GER++D+YSRLL+ERI+F+  Q+++++A  I AQ
Sbjct: 13  NSSYSKSQVYSGPSNIVPMVVEQSGMGERAFDLYSRLLRERIIFLGTQVDENLANTITAQ 72

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           +LFL+AE+P+K+I LYINSPGG VTAGMAIYDTMQ ++P + T C G AASMG+ LLS G
Sbjct: 73  MLFLDAEDPEKDIQLYINSPGGSVTAGMAIYDTMQQVRPDVVTICYGLAASMGAFLLSGG 132

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
            KG R +LP++RI++HQP GG  GQA DIE  A++I+  KR+LNE+  ++ G+  E++E 
Sbjct: 133 AKGKRMSLPSSRIMIHQPLGGAQGQAVDIEIQAKEILYHKRKLNELLAEHTGQPLEKIEV 192

Query: 183 TLDRDHIMSASEACDWGVVDKVLMS 207
             +RD  MSA EA ++G++D+V+  
Sbjct: 193 DTERDFFMSAEEAKNYGLIDQVITR 217


>gi|145635952|ref|ZP_01791637.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae PittAA]
 gi|319897851|ref|YP_004136048.1| ATP-dependent clp protease proteolytic subunit [Haemophilus
           influenzae F3031]
 gi|145266785|gb|EDK06804.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae PittAA]
 gi|301169432|emb|CBW29032.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Haemophilus influenzae 10810]
 gi|317433357|emb|CBY81736.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae F3031]
          Length = 193

 Score =  283 bits (725), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 124/193 (64%), Positives = 158/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++PMVVEQT+RGERSYDIYSRLLKER++F++G++ED MA LI AQLLFLE+E+P K+I
Sbjct: 1   MSVIPMVVEQTSRGERSYDIYSRLLKERVIFLSGEVEDRMANLIVAQLLFLESEDPTKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           ++YINSPGG VTAGMAIYDTMQFIKP I T C+GQA SMG+ LL+ G  G R ALPNAR+
Sbjct: 61  NIYINSPGGSVTAGMAIYDTMQFIKPDIRTLCIGQACSMGAFLLAGGTAGKRAALPNARV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQASDI+ HAQ+I+KIK  LN+    + G++ E +EK  DRD+ MSA EA
Sbjct: 121 MIHQPLGGFRGQASDIQIHAQEILKIKHTLNDRLAFHTGQSIERIEKDTDRDNFMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD+VL+ R
Sbjct: 181 QVYGLVDEVLVKR 193


>gi|212640342|ref|YP_002316862.1| ATP-dependent Clp protease proteolytic subunit [Anoxybacillus
           flavithermus WK1]
 gi|226706440|sp|B7GL34|CLPP_ANOFW RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|212561822|gb|ACJ34877.1| ATP-dependent Clp protease proteolytic subunit (class III
           heat-shock protein) [Anoxybacillus flavithermus WK1]
          Length = 196

 Score =  283 bits (725), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 113/197 (57%), Positives = 156/197 (79%), Gaps = 1/197 (0%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT+RGER+YDIYSRLLK+RI+ +   I+DH+A  I +QLLFL AE+P+K+I
Sbjct: 1   MNLIPTVIEQTSRGERAYDIYSRLLKDRIIILGSPIDDHVANSIVSQLLFLAAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG +TAGMAIYDTMQFIKP +ST C+G AASMG+ LL+AG KG RFALPN+ I
Sbjct: 61  SLYINSPGGSITAGMAIYDTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN I  +N G+  E +E+  DRD+ M+A +A
Sbjct: 121 MIHQPLGGVQGQATEIEIAAKRILFLRDKLNRILSENTGQPIEVIERDTDRDNFMTAEKA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G++D+VL  R+D +
Sbjct: 181 KEYGLIDRVLT-RVDEK 196


>gi|71083579|ref|YP_266298.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Pelagibacter ubique HTCC1062]
 gi|91762000|ref|ZP_01263965.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Pelagibacter ubique HTCC1002]
 gi|115311789|sp|Q4FM94|CLPP_PELUB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|71062692|gb|AAZ21695.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Pelagibacter ubique HTCC1062]
 gi|91717802|gb|EAS84452.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Pelagibacter ubique HTCC1002]
          Length = 203

 Score =  283 bits (725), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 123/196 (62%), Positives = 168/196 (85%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
           D    LVPMVVEQ+N+GER+YDIYSRLLKERI+F+ G I D++A+L+ AQLLFLE+E+P+
Sbjct: 7   DQMNTLVPMVVEQSNKGERAYDIYSRLLKERIIFLVGPINDNVASLVTAQLLFLESEDPK 66

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           KEI+LYINSPGG+VTAG+ IYDTMQ+IKP +ST C+GQAASMGS LL+AG+KG RF+LPN
Sbjct: 67  KEINLYINSPGGLVTAGLGIYDTMQYIKPDVSTLCIGQAASMGSFLLAAGKKGKRFSLPN 126

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           +RI++HQPS GF GQA+DIE HA +++ +K+RLNEIY K+ GK+ ++V+K L+RD+ M+ 
Sbjct: 127 SRIMVHQPSAGFQGQATDIEIHANEVLALKKRLNEIYSKHTGKSVDDVKKALERDNFMTP 186

Query: 193 SEACDWGVVDKVLMSR 208
             A ++G++D+V+ +R
Sbjct: 187 DTAKEFGLIDEVVENR 202


>gi|170760538|ref|YP_001788551.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum A3 str. Loch Maree]
 gi|226706446|sp|B1L1D7|CLPP_CLOBM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|169407527|gb|ACA55938.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 194

 Score =  283 bits (724), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 116/194 (59%), Positives = 154/194 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQTNRGERSYDIYSRLLK+RI+ ++ ++ D  A+LI AQLLFLEAE+P K+I
Sbjct: 1   MSLVPVVVEQTNRGERSYDIYSRLLKDRIIMLSEEVNDTTASLIVAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +T+GMAIYDTMQ+IKP +ST C+G AASMG+ LL AG KG R+ALPN+ +
Sbjct: 61  HLYINSPGGSITSGMAIYDTMQYIKPDVSTICVGMAASMGAFLLVAGAKGKRYALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DI  HA+ I+K+K++LN I     GK  E+VE   +RDH +SA EA
Sbjct: 121 MIHQPLGGFQGQATDIGIHAERILKMKKKLNTILSDRTGKPLEQVELDTERDHFLSAEEA 180

Query: 196 CDWGVVDKVLMSRI 209
            ++G++D+V+  + 
Sbjct: 181 KEYGLIDEVIDKKK 194


>gi|124021784|ref|YP_001016091.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9303]
 gi|123962070|gb|ABM76826.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9303]
          Length = 224

 Score =  283 bits (724), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 101/191 (52%), Positives = 144/191 (75%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G++P VVEQ+ RGER++DIYSRLL+ERI+F+   ++D +A  + AQ+LFLEAE+P+K+I 
Sbjct: 24  GILPTVVEQSGRGERAFDIYSRLLRERIIFLGTGVDDQVADALVAQMLFLEAEDPEKDIQ 83

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VTAG+AIYDTMQ + P + T C G AASMG+ LL  G KG R ALPNARI+
Sbjct: 84  IYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLCGGTKGKRLALPNARIM 143

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA DIE  A++I+ +K  LN +  ++ G+   ++ +  DRDH +S ++A 
Sbjct: 144 IHQPLGGAQGQAVDIEIQAKEILFLKETLNGLLAEHTGQPLNKIAEDTDRDHFLSPAKAV 203

Query: 197 DWGVVDKVLMS 207
           ++G++D+V+ S
Sbjct: 204 EYGLIDRVVDS 214


>gi|25019682|gb|AAN71768.1| ClpP2 [Synechococcus elongatus PCC 7942]
          Length = 302

 Score =  283 bits (724), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 108/191 (56%), Positives = 142/191 (74%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            +VP VVEQ+ RGER++DIYSRLL+ERIVF+   ++D +A  I AQLLFLEAE+P+K+I 
Sbjct: 98  AIVPTVVEQSGRGERAFDIYSRLLRERIVFLGTGVDDAVADSIVAQLLFLEAEDPEKDIQ 157

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGMAIYDTMQ + P ++T C G AASMG+ LLS G +G R ALP+ARI+
Sbjct: 158 LYINSPGGSVTAGMAIYDTMQQVAPDVATICFGLAASMGAFLLSGGAQGKRMALPSARIM 217

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA DIE  A++I+  K  LN++  ++ G+  E++E   DRD  MS  EA 
Sbjct: 218 IHQPLGGAQGQAVDIEIQAREILYHKSTLNDLLAQHTGQPLEKIEVDTDRDFFMSPEEAK 277

Query: 197 DWGVVDKVLMS 207
            +G++D+VL  
Sbjct: 278 AYGLIDQVLTR 288


>gi|148558952|ref|YP_001259031.1| ATP-dependent Clp protease proteolytic subunit [Brucella ovis ATCC
           25840]
 gi|297248424|ref|ZP_06932142.1| ATP-dependent Clp protease, protease subunit [Brucella abortus bv.
           5 str. B3196]
 gi|148370209|gb|ABQ60188.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brucella ovis
           ATCC 25840]
 gi|297175593|gb|EFH34940.1| ATP-dependent Clp protease, protease subunit [Brucella abortus bv.
           5 str. B3196]
          Length = 228

 Score =  283 bits (724), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 148/216 (68%), Positives = 186/216 (86%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           + ++    +D  +  + LVPMVVEQTNRGER+YDI+SRLLKERI+FV G +ED M+ L+C
Sbjct: 13  LIYQRPIMRDPIETVMNLVPMVVEQTNRGERAYDIFSRLLKERIIFVNGPVEDGMSMLVC 72

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLEAENP+KEI++YINSPGGVVT+GMAIYDTMQFI+PP+ST CMGQAASMGSLLL+
Sbjct: 73  AQLLFLEAENPKKEINMYINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLT 132

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG  G R+ALPNARI++HQPSGGF GQASDIERHAQDI+K+KRRLNEIYVK+ G+ Y+ +
Sbjct: 133 AGATGHRYALPNARIMVHQPSGGFQGQASDIERHAQDIIKMKRRLNEIYVKHTGRDYDTI 192

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           E+TLDRDH M+A EA ++G++DKV+ +R    ++SK
Sbjct: 193 ERTLDRDHFMTAQEALEFGLIDKVVEARDVSADESK 228


>gi|119945201|ref|YP_942881.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Psychromonas
           ingrahamii 37]
 gi|259585963|sp|A1SUW7|CLPP_PSYIN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|119863805|gb|ABM03282.1| ATP-dependent Clp protease proteolytic subunit ClpP [Psychromonas
           ingrahamii 37]
          Length = 207

 Score =  283 bits (724), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 121/209 (57%), Positives = 156/209 (74%), Gaps = 2/209 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS       D       L+PMVVEQT +GERSYDIYSRLLKER++F+TG +EDH+A +I 
Sbjct: 1   MSNPFAGNTDPISN--ALIPMVVEQTAKGERSYDIYSRLLKERVIFLTGPVEDHVANVIA 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE+E+P+K+I +YINSPGG ++AGMAIYDTMQFIKP +ST CMG AASMG+ LL+
Sbjct: 59  AQLLFLESESPEKDIFIYINSPGGSISAGMAIYDTMQFIKPDVSTVCMGMAASMGAFLLA 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           +G  G R  LPNA++++HQP GGF GQASD E HA++I+  K R+NE+   + GK  E +
Sbjct: 119 SGAPGKRHCLPNAKVMIHQPLGGFQGQASDFEIHAKEILATKHRMNELLAFHTGKDIEII 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRI 209
            +  DRD+ M ASEA ++G+VD VL  R 
Sbjct: 179 AQDTDRDNFMRASEAVEYGIVDSVLTHRK 207


>gi|299135043|ref|ZP_07028234.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Afipia sp.
           1NLS2]
 gi|298590020|gb|EFI50224.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Afipia sp.
           1NLS2]
          Length = 210

 Score =  283 bits (724), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 137/204 (67%), Positives = 177/204 (86%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  + ++ LVPMVVEQTNRGER+YDI+SRLLKERI+F+TG +ED M+TL+ AQLLFLEA
Sbjct: 2   RDPVETYMNLVPMVVEQTNRGERAYDIFSRLLKERIIFLTGPVEDGMSTLVVAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEIS+YINSPGGVVT+G+AIYDTMQFI+PP+ST C GQAASMGSLLL+AGEK MRF
Sbjct: 62  ENPKKEISMYINSPGGVVTSGLAIYDTMQFIRPPVSTLCTGQAASMGSLLLAAGEKDMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPN+RI++HQPSGGF GQA+DI  HAQ+I+ +K+RLNEIYVK+ G+ Y+ +E  L+RD+
Sbjct: 122 SLPNSRIMVHQPSGGFQGQATDIMLHAQEILNLKKRLNEIYVKHTGQDYKTIEDALERDN 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIE 212
            ++A +A D+G+VDKV+  R +  
Sbjct: 182 FLTADKAKDFGIVDKVIDKRPEDP 205


>gi|167761297|ref|ZP_02433424.1| hypothetical protein CLOSCI_03702 [Clostridium scindens ATCC 35704]
 gi|167660963|gb|EDS05093.1| hypothetical protein CLOSCI_03702 [Clostridium scindens ATCC 35704]
          Length = 193

 Score =  283 bits (724), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 112/193 (58%), Positives = 151/193 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLLK+RI+F+  ++ D  A++I AQLLFLEAE+P+K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLKDRIIFLGEEVTDVSASVIVAQLLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG+AIYDTMQ+IK  I T C+G AASMGS LL+ G KG R ALPNA I
Sbjct: 61  HLYINSPGGSVTAGLAIYDTMQYIKCDIETICIGMAASMGSFLLAGGTKGKRLALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I+  A+ I+K +++LN+I  +N G+  + +    +RD+ MSA EA
Sbjct: 121 MIHQPSGGAQGQATEIQIAAEHILKTRQKLNQILAENTGQPLDVIRIGTERDNFMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D+V+ SR
Sbjct: 181 KAYGLIDEVIKSR 193


>gi|160878535|ref|YP_001557503.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           phytofermentans ISDg]
 gi|160427201|gb|ABX40764.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           phytofermentans ISDg]
          Length = 193

 Score =  283 bits (724), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 120/193 (62%), Positives = 154/193 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLLKERI+F+  ++ D  A++I AQLLFLEAE+P K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLKERIIFLGEEVTDVSASVIVAQLLFLEAEDPGKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG VTAGMAIYDTM +IK  +ST C+G AASMG+ LL+ G KG RFALPNA +
Sbjct: 61  SLYINSPGGSVTAGMAIYDTMNYIKCDVSTICIGMAASMGAFLLAGGAKGKRFALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+DI+  A++I+KIK++LN I  +N GK  E VE   +RD+ MSA EA
Sbjct: 121 MIHQPSGGAKGQATDIQIVAENILKIKKKLNTILSENTGKPLEVVEVDTERDYYMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++D V+ SR
Sbjct: 181 KNYGIIDSVIASR 193


>gi|300856723|ref|YP_003781707.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           ljungdahlii DSM 13528]
 gi|300436838|gb|ADK16605.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           ljungdahlii DSM 13528]
          Length = 194

 Score =  283 bits (724), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 115/194 (59%), Positives = 154/194 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQT+RGERSYDIYSRLLK+RIV ++ ++ D  A+L+ AQLLFLEAE+P K+I
Sbjct: 1   MSLVPVVVEQTSRGERSYDIYSRLLKDRIVMLSEEVNDVSASLVVAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +T+GMAIYDTMQ+IK  +ST C+G  ASMG+ LL+AG KG RFALPNA I
Sbjct: 61  YLYINSPGGSITSGMAIYDTMQYIKSDVSTICIGMGASMGAFLLTAGAKGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DI  HA+ I+ IK++LN I  +  G+  E+VEK  +RD+ M+A EA
Sbjct: 121 MIHQPLGGFQGQATDIGIHAKRILDIKKKLNTIISERTGQPLEKVEKDTERDNFMTAEEA 180

Query: 196 CDWGVVDKVLMSRI 209
            ++G++D+V+  + 
Sbjct: 181 KEYGLIDEVITKKK 194


>gi|159043937|ref|YP_001532731.1| ATP-dependent Clp protease proteolytic subunit [Dinoroseobacter
           shibae DFL 12]
 gi|189082456|sp|A8LJA8|CLPP_DINSH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|157911697|gb|ABV93130.1| endopeptidase Clp [Dinoroseobacter shibae DFL 12]
          Length = 208

 Score =  283 bits (724), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 132/207 (63%), Positives = 172/207 (83%), Gaps = 1/207 (0%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           D  D ++ LVPMVVEQT+RGER+YDI+SRLLKERIVFV G + D M+ L+ AQLL LEAE
Sbjct: 3   DPVDTYMNLVPMVVEQTSRGERAYDIFSRLLKERIVFVNGPVHDGMSQLVVAQLLHLEAE 62

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP KEIS+YINSPGGVVT+G++IYDTMQ+IKP +ST  +GQAASMGSLLL+AGEKGMRF+
Sbjct: 63  NPSKEISMYINSPGGVVTSGLSIYDTMQYIKPKVSTLVVGQAASMGSLLLTAGEKGMRFS 122

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPN+RI++HQPSGG+ GQA+DI  HAQ+  K+K RLN+IYVK+ G+  ++V   L+RD+ 
Sbjct: 123 LPNSRIMVHQPSGGYQGQATDIMIHAQETQKLKDRLNQIYVKHTGQPLKKVVDALERDNF 182

Query: 190 MSASEACDWGVVDKVLMSRIDIEEKSK 216
           M A +A +WG++D+++ SR + E+ SK
Sbjct: 183 MDAEQAKEWGLIDEIVESRAN-EDTSK 208


>gi|188590743|ref|YP_001921998.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum E3 str. Alaska E43]
 gi|251778109|ref|ZP_04821029.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|226706443|sp|B2UX13|CLPP_CLOBA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|188501024|gb|ACD54160.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum E3 str. Alaska E43]
 gi|243082424|gb|EES48314.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 199

 Score =  283 bits (724), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 118/199 (59%), Positives = 157/199 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT+RGERSYDI+SRLLKERI+ ++G++ D  + LI +QLLFLE+E+P K+I
Sbjct: 1   MSLVPMVVEQTSRGERSYDIFSRLLKERIIMLSGEVNDDSSNLIVSQLLFLESEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGG +TAGMAIYDTMQ+IKP +ST C+G AASMG+ LLS+G KG R+ALPNA I
Sbjct: 61  SIYINSPGGSITAGMAIYDTMQYIKPDVSTICVGMAASMGAFLLSSGAKGKRYALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DI+ HA  I+KIK  LN+I  +N  +  E +E  ++RD+ M+A EA
Sbjct: 121 MIHQPLGGFQGQATDIQIHANRILKIKESLNKILSENTNQPLEVIEADVERDNFMTADEA 180

Query: 196 CDWGVVDKVLMSRIDIEEK 214
             +G+VDKV+      ++K
Sbjct: 181 KAYGLVDKVITKNGTGKDK 199


>gi|88809960|ref|ZP_01125465.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. WH 7805]
 gi|88786150|gb|EAR17312.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. WH 7805]
          Length = 229

 Score =  283 bits (724), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 105/194 (54%), Positives = 147/194 (75%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G++P VVEQ+ RG+R++DIYSRLL+ERI+F+   ++D +A  + AQLLFLEAE+P+K+I 
Sbjct: 29  GVLPTVVEQSGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQLLFLEAEDPEKDIQ 88

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VTAG+AIYDTMQ + P + T C G AASMG+ LLS G KG R ALPNARI+
Sbjct: 89  VYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIM 148

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA DIE  A++I+ +K  LN +  ++ G+  +++ +  DRD+ +S SEA 
Sbjct: 149 IHQPMGGAQGQAVDIEIQAKEILFLKETLNGLMAEHTGQPLDKIAEDTDRDYFLSPSEAV 208

Query: 197 DWGVVDKVLMSRID 210
           D+G++D+V+ S  D
Sbjct: 209 DYGLIDRVVDSLKD 222


>gi|291563765|emb|CBL42581.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [butyrate-producing bacterium SS3/4]
          Length = 193

 Score =  283 bits (724), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 107/191 (56%), Positives = 148/191 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+E T+RGERSYDIYSRLLK+RI+F+  ++ D  A+L+ AQLLFLE+E+P K+I
Sbjct: 1   MSLVPYVLESTSRGERSYDIYSRLLKDRIIFLGEEVNDVTASLVVAQLLFLESEDPNKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGG VTAGMAIYDTM +IK  + T C+G AASMG+ LLS+G KG RFALPNA +
Sbjct: 61  NLYINSPGGSVTAGMAIYDTMNYIKCDVCTTCIGMAASMGAFLLSSGAKGKRFALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I+  A+ I+K K +LN+I   N G+  + + +  +RD+ M+A EA
Sbjct: 121 MIHQPSGGAQGQATEIKIVAEQILKTKEKLNKILAANTGQPLDVIARDTERDNYMTAEEA 180

Query: 196 CDWGVVDKVLM 206
             +G++D+V+ 
Sbjct: 181 AAYGLIDRVIS 191


>gi|110633522|ref|YP_673730.1| ATP-dependent Clp protease proteolytic subunit [Mesorhizobium sp.
           BNC1]
 gi|116243101|sp|Q11J60|CLPP1_MESSB RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|110284506|gb|ABG62565.1| ATP-dependent Clp protease proteolytic subunit ClpP [Chelativorans
           sp. BNC1]
          Length = 210

 Score =  283 bits (724), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 150/204 (73%), Positives = 180/204 (88%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           K+  +  + LVPMVVEQTNRGER+YDI+SRLLKERI+F+TG +ED MATL+CAQLLFLEA
Sbjct: 2   KNPVETAMNLVPMVVEQTNRGERAYDIFSRLLKERIIFITGPVEDGMATLVCAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI+LYINSPGGVVT+GMAIYDTMQFI+PP+ST C+GQAASMGSLLL AG K MRF
Sbjct: 62  ENPKKEIALYINSPGGVVTSGMAIYDTMQFIQPPVSTLCIGQAASMGSLLLCAGHKDMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           A PNAR+++HQPSGGF GQASDIERHAQDI+K+KRRLNEIYVK+ G+ Y+ +E+TLDRDH
Sbjct: 122 ATPNARVMVHQPSGGFQGQASDIERHAQDIIKLKRRLNEIYVKHTGQDYDTIERTLDRDH 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIE 212
            M+A EA  +G+VD+V+  R  IE
Sbjct: 182 FMTADEAQAFGLVDRVISEREAIE 205


>gi|240850274|ref|YP_002971667.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bartonella
           grahamii as4aup]
 gi|240267397|gb|ACS50985.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bartonella
           grahamii as4aup]
          Length = 210

 Score =  283 bits (724), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 151/207 (72%), Positives = 179/207 (86%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           D     L LVPMV+EQTNRGER+YDI+SRLLKERI+F+ G +ED MA L+CAQLLFLEAE
Sbjct: 3   DPMKTALSLVPMVIEQTNRGERAYDIFSRLLKERIIFINGPVEDGMAMLVCAQLLFLEAE 62

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP+KEISLYINSPGGVVT+GMAIYDTMQFI+PP+ST CMGQAASMGSLLL+AG KG RF 
Sbjct: 63  NPKKEISLYINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGAKGHRFT 122

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPNARI++HQPSGGF GQASDIERHAQDI+K+KRRLNEIYV++ G+ YE +E+TLDRDH 
Sbjct: 123 LPNARIMVHQPSGGFQGQASDIERHAQDIIKMKRRLNEIYVQHTGQDYEIIERTLDRDHF 182

Query: 190 MSASEACDWGVVDKVLMSRIDIEEKSK 216
           M+A EA  +G+VD V+  R + E++ K
Sbjct: 183 MTAEEAKAFGLVDDVIQYRAETEKEEK 209


>gi|266624421|ref|ZP_06117356.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           hathewayi DSM 13479]
 gi|288863728|gb|EFC96026.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           hathewayi DSM 13479]
          Length = 195

 Score =  283 bits (724), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 116/192 (60%), Positives = 154/192 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+E T++GERSYDIYSRLLKERI+F+  ++ D  A+++ AQLLFLEAE+P K+I
Sbjct: 1   MSLVPYVIESTSKGERSYDIYSRLLKERIIFLGEEVTDVSASIVVAQLLFLEAEDPNKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGG VTAGMAIYDTM +IK  +ST CMG AASMG+ LLS G KG RFALPNA I
Sbjct: 61  NLYINSPGGSVTAGMAIYDTMNYIKCDVSTVCMGMAASMGAFLLSGGAKGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I+  A++I+KIK+RLNEI   N G+ YE +E+  +RD+ M+A EA
Sbjct: 121 MIHQPSGGAQGQATEIKIVAENILKIKKRLNEILAANTGQPYEVIERDTERDNYMNAEEA 180

Query: 196 CDWGVVDKVLMS 207
             +G++D+++ S
Sbjct: 181 KAYGLIDEIIYS 192


>gi|42784300|ref|NP_981547.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           ATCC 10987]
 gi|67460499|sp|Q72XW9|CLPP2_BACC1 RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|42740231|gb|AAS44155.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus ATCC 10987]
          Length = 193

 Score =  283 bits (724), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 106/193 (54%), Positives = 152/193 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFLE+++P K+I
Sbjct: 1   MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +TAGMAIYDTMQFIKP +ST C+G AASMG+ LL+AGEKG R+ALPN+ +
Sbjct: 61  HLYINSPGGSITAGMAIYDTMQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN+I     G+  E +++  DRD+ M+A +A
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILFLREKLNQILADRTGQPLEVLQRDTDRDNFMTAEKA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++DK+  +R
Sbjct: 181 LEYGLIDKIFTNR 193


>gi|255528525|ref|ZP_05395307.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           carboxidivorans P7]
 gi|296184877|ref|ZP_06853288.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           carboxidivorans P7]
 gi|255507783|gb|EET84241.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           carboxidivorans P7]
 gi|296050659|gb|EFG90082.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           carboxidivorans P7]
          Length = 194

 Score =  283 bits (724), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 118/194 (60%), Positives = 157/194 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQTNRGERSYDIYSRLLK+R+V +T ++ D  A+L+ AQLLFLEAE+P K+I
Sbjct: 1   MSLVPVVVEQTNRGERSYDIYSRLLKDRVVMLTEEVNDVTASLVVAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +TAGMAIYDTMQ+IKP +ST C+G AASMG+ LL+AG KG R ALPNA I
Sbjct: 61  YLYINSPGGSITAGMAIYDTMQYIKPDVSTICIGMAASMGAFLLNAGAKGKRVALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DI  HA+ I+KIK++LN I+ +  G+  E +EK  +RD+ MSA EA
Sbjct: 121 MIHQPLGGFQGQATDIGIHAERILKIKKKLNTIFSERTGQPLETIEKDTERDNFMSAEEA 180

Query: 196 CDWGVVDKVLMSRI 209
            ++G++D++++ + 
Sbjct: 181 KEYGLIDEIMVKKK 194


>gi|78183646|ref|YP_376080.1| peptidase S14, ClpP [Synechococcus sp. CC9902]
 gi|124013821|sp|Q3B0U1|CLPP2_SYNS9 RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|78167940|gb|ABB25037.1| ATP-dependent Clp protease proteolytic subunit ClpP [Synechococcus
           sp. CC9902]
          Length = 207

 Score =  283 bits (724), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 101/194 (52%), Positives = 146/194 (75%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G +P VVEQ+ RG+R++DIYSRLL+ERI+F+   ++D +A  + AQ+LFLEAE+P+K+I 
Sbjct: 7   GPLPTVVEQSGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDIQ 66

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+NSPGG VTAG+AIYDTMQ + P + T C G AASMG+ LLS G KG R ALPNARI+
Sbjct: 67  IYVNSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIM 126

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA DIE  A++I+ +K  LN +  ++ G+  +++ +  DRD+ +S +EA 
Sbjct: 127 IHQPLGGAQGQAVDIEIQAKEILFLKETLNGLLAEHTGQPLDKISEDTDRDYFLSPAEAV 186

Query: 197 DWGVVDKVLMSRID 210
           ++G++D+V+ S  D
Sbjct: 187 EYGLIDRVVDSSGD 200


>gi|329908483|ref|ZP_08274873.1| ATP-dependent Clp protease proteolytic subunit [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327546710|gb|EGF31661.1| ATP-dependent Clp protease proteolytic subunit [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 206

 Score =  282 bits (723), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 122/197 (61%), Positives = 157/197 (79%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E   LG++PMV+EQ+ RGERSYDIYSRLLKER++F+ G + D +A LI AQLLFLE+ENP
Sbjct: 9   EPQMLGMIPMVIEQSGRGERSYDIYSRLLKERVIFLVGPVNDGVANLIVAQLLFLESENP 68

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+ISLYINSPGG V+AGMAI+DTMQFIKP +ST C G AASMG+ LL+AG KG RF+LP
Sbjct: 69  DKDISLYINSPGGSVSAGMAIFDTMQFIKPNVSTLCTGLAASMGAFLLAAGAKGKRFSLP 128

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+RI++HQPSGG  GQA+DIE  A++I+ ++ RLN I     G+T EE+ +  +RD+ MS
Sbjct: 129 NSRIMIHQPSGGAQGQATDIEIQAKEILYLRERLNGILADKTGRTIEEIRRDTERDNFMS 188

Query: 192 ASEACDWGVVDKVLMSR 208
           A EA  +G++DKVL +R
Sbjct: 189 ADEAEKYGMIDKVLTTR 205


>gi|268317954|ref|YP_003291673.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhodothermus
           marinus DSM 4252]
 gi|262335488|gb|ACY49285.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhodothermus
           marinus DSM 4252]
          Length = 252

 Score =  282 bits (723), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 105/193 (54%), Positives = 150/193 (77%), Gaps = 1/193 (0%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVP+V+EQT RGER+YDI+SRLLKERIV +   I D +A L+ AQLL+L +E+ +++I+
Sbjct: 35  ALVPIVIEQTTRGERAYDIFSRLLKERIVIIGTPINDQIANLVVAQLLWLASEDSERDIN 94

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG + +G+A+YDTMQ++ PP++T C+G AASMG++LL+AG KG R ALPN+RI+
Sbjct: 95  IYINSPGGSIDSGLAVYDTMQYVAPPVATICVGLAASMGAVLLAAGVKGKRAALPNSRIM 154

Query: 137 LHQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP   G  GQA+DIE HA++I+K++ RLNEI   + G+  E + + +DRD  +SA EA
Sbjct: 155 IHQPWMSGVQGQATDIEIHAREILKMRERLNEILAYHTGQPKERIAQDVDRDFWLSAQEA 214

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD VL  R
Sbjct: 215 KEYGLVDNVLTPR 227


>gi|167646810|ref|YP_001684473.1| ATP-dependent Clp protease proteolytic subunit [Caulobacter sp.
           K31]
 gi|189082451|sp|B0SZQ2|CLPP_CAUSK RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|167349240|gb|ABZ71975.1| Endopeptidase Clp [Caulobacter sp. K31]
          Length = 208

 Score =  282 bits (723), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 150/207 (72%), Positives = 178/207 (85%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
            D     + LVPMVVEQT+RGER++DI+SRLLKERI+F+TG +ED MA+LICAQLLFLE+
Sbjct: 2   YDPMATAMNLVPMVVEQTSRGERAFDIFSRLLKERIIFLTGPVEDGMASLICAQLLFLES 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI++YINSPGGVVTAG+AIYDTMQ+IK P+ST CMG AASMGSLLL AG  G R 
Sbjct: 62  ENPKKEIAMYINSPGGVVTAGLAIYDTMQYIKSPVSTVCMGMAASMGSLLLQAGAPGHRI 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           ALPNARI++HQPSGGF GQASDIERHA+DI+K KRRLNEIYVK+ G+TYEEVEKTLDRDH
Sbjct: 122 ALPNARIMVHQPSGGFRGQASDIERHAEDIIKTKRRLNEIYVKHTGRTYEEVEKTLDRDH 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIEEKS 215
            MSA EA  WG++D +  SR + +EK+
Sbjct: 182 FMSAEEAKAWGLIDHINESRDEADEKA 208


>gi|307265821|ref|ZP_07547372.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919216|gb|EFN49439.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 195

 Score =  282 bits (723), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 111/195 (56%), Positives = 152/195 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQTNRGERSYDI+SRLLK+RIVF+  +I D  A+L+ AQLLFLEAE+P K+I
Sbjct: 1   MSLVPIVVEQTNRGERSYDIFSRLLKDRIVFLGEEINDTTASLVIAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +TAG AIYDTMQ+IKP + T C+G AASM + LL+AG KG RFALPN+ I
Sbjct: 61  WLYINSPGGSITAGFAIYDTMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+ HA+ I+K++ +L++I  +N G+  E+++   +RD  M A +A
Sbjct: 121 MIHQPLGGMQGQATDIKIHAERILKLRDKLDKILAENTGQPIEKIKADTERDFFMDAEDA 180

Query: 196 CDWGVVDKVLMSRID 210
             +G++D+VL+ +  
Sbjct: 181 KAYGIIDEVLVRKKK 195


>gi|238898003|ref|YP_002923683.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|259585958|sp|C4K4P2|CLPP_HAMD5 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|229465761|gb|ACQ67535.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 215

 Score =  282 bits (723), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 127/209 (60%), Positives = 170/209 (81%)

Query: 8   KKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           ++++    + LVPMVVEQT+RGER+YDIYSR+LKER++F+TGQ+E+HMA LI AQ+LFLE
Sbjct: 6   EQNTRLPSMTLVPMVVEQTSRGERAYDIYSRMLKERVIFLTGQVEEHMANLIVAQMLFLE 65

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AENP+K+I LYINSPGGV+TAGM+IYDTMQFI P +ST C+GQA SMG+ LL+AG K  R
Sbjct: 66  AENPEKDIYLYINSPGGVITAGMSIYDTMQFITPDVSTICIGQACSMGAFLLAAGAKSKR 125

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           + LPNAR+++HQP GGF GQASDIE HA++I+K+K+R+N++   +  KT + +EK  +RD
Sbjct: 126 YCLPNARVMIHQPLGGFQGQASDIEIHAKEILKVKKRMNDLMAIHTKKTLKIIEKDTERD 185

Query: 188 HIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           H +SA EA  +G+VD VL  R D++  SK
Sbjct: 186 HFLSAEEAKKYGLVDCVLTERKDVKNFSK 214


>gi|115634688|ref|XP_786892.2| PREDICTED: similar to LOC496087 protein [Strongylocentrotus
           purpuratus]
          Length = 239

 Score =  282 bits (723), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 110/200 (55%), Positives = 161/200 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVP+V+EQT RGER+YDIYSRLLKERI+ + G + D +++++ AQLLFL++E+ +K I 
Sbjct: 32  PLVPIVIEQTGRGERAYDIYSRLLKERIICLMGPVNDTVSSVVIAQLLFLQSESNKKPIH 91

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VTAG+ IYD+MQ++ PPI+T+C+GQA SMGSLLL+AG  GMR +LPN+RI+
Sbjct: 92  MYINSPGGSVTAGLGIYDSMQYVLPPIATWCVGQACSMGSLLLTAGAPGMRHSLPNSRIM 151

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSG   GQA+DI+  A++I+K+K+++N++YVK+ G+T + +E+ ++RDH MS  EA 
Sbjct: 152 VHQPSGQAVGQATDIQIQAEEIIKLKKQINKLYVKHTGQTLDVIEQAMERDHFMSPQEAL 211

Query: 197 DWGVVDKVLMSRIDIEEKSK 216
            +G++DKVL     I E ++
Sbjct: 212 QFGLIDKVLDHPPHIGENNQ 231


>gi|326492708|dbj|BAJ90210.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 285

 Score =  282 bits (723), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 120/193 (62%), Positives = 159/193 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMVVE T+RGER+YDI+SRLLKERIV + G I D  A+L+ AQLLFLE+ENP K IS
Sbjct: 56  GLVPMVVETTSRGERAYDIFSRLLKERIVCIHGPIADETASLVVAQLLFLESENPLKPIS 115

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGVVTAG+AIYDTMQ+I+ P++T C+GQAASMGSLLL+AG +G R ALPNAR++
Sbjct: 116 LYINSPGGVVTAGLAIYDTMQYIRCPVNTICIGQAASMGSLLLAAGARGERRALPNARVM 175

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  GQA+DI   A++I+K++ RLN+IY K+ G+  +++E+ ++RD  M   EA 
Sbjct: 176 IHQPSGGAQGQATDIAIQAKEILKLRDRLNKIYAKHTGQNIDKIEQCMERDLFMDPEEAR 235

Query: 197 DWGVVDKVLMSRI 209
           +WG++D+V+ +R 
Sbjct: 236 EWGLIDEVIENRP 248


>gi|319650519|ref|ZP_08004659.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sp.
           2_A_57_CT2]
 gi|317397700|gb|EFV78398.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sp.
           2_A_57_CT2]
          Length = 201

 Score =  282 bits (723), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 112/201 (55%), Positives = 154/201 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RI+ +   I+D++A  I AQLLFLEAENP+K+I
Sbjct: 1   MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVAQLLFLEAENPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGG +TAGMAIYDTMQFIKP + T C+G AASMG+ LL+AGEKG RFALPN+ +
Sbjct: 61  SIYINSPGGSITAGMAIYDTMQFIKPKVQTICIGMAASMGAFLLAAGEKGKRFALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN I  +  G+  E + +  DRD+ M+A  A
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILFLREKLNTILSERTGQPLEVIARDTDRDNFMTAERA 180

Query: 196 CDWGVVDKVLMSRIDIEEKSK 216
            ++G+VD+++      E+K K
Sbjct: 181 LEYGLVDQIITRNSLDEKKDK 201


>gi|50083772|ref|YP_045282.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter sp.
           ADP1]
 gi|60389584|sp|Q6FEP8|CLPP_ACIAD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|49529748|emb|CAG67460.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           (Caseinolytic protease) (Protease Ti) (Heat shock
           protein F21.5) [Acinetobacter sp. ADP1]
          Length = 201

 Score =  282 bits (723), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 123/193 (63%), Positives = 159/193 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVP+VVEQ++RGERS+DI+SRLL+ER++F+TG++ED+MA LI AQ+LFLEAENP K+I 
Sbjct: 9   ALVPVVVEQSSRGERSFDIFSRLLRERVIFLTGEVEDNMANLIVAQMLFLEAENPDKDIH 68

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGMAIYDTMQFIKP + T+CMGQAASMG+ LL+AG KG R+ L NAR++
Sbjct: 69  LYINSPGGSVTAGMAIYDTMQFIKPDVVTYCMGQAASMGAFLLNAGAKGKRYCLENARVM 128

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+ IK RLN +  ++ G+ YE V +  DRD+ M+A  A 
Sbjct: 129 IHQPLGGFRGQASDIEIHAREILFIKERLNRLMAEHSGQDYERVARDTDRDNFMTAQAAK 188

Query: 197 DWGVVDKVLMSRI 209
           ++G+VD+VL  R 
Sbjct: 189 EYGLVDEVLSKRP 201


>gi|21241838|ref|NP_641420.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
           axonopodis pv. citri str. 306]
 gi|58580656|ref|YP_199672.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas oryzae
           pv. oryzae KACC10331]
 gi|78046637|ref|YP_362812.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|84622589|ref|YP_449961.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas oryzae
           pv. oryzae MAFF 311018]
 gi|166710928|ref|ZP_02242135.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas oryzae
           pv. oryzicola BLS256]
 gi|188578371|ref|YP_001915300.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas oryzae
           pv. oryzae PXO99A]
 gi|188992776|ref|YP_001904786.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
           campestris pv. campestris str. B100]
 gi|289664185|ref|ZP_06485766.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
           campestris pv. vasculorum NCPPB702]
 gi|289668776|ref|ZP_06489851.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
           campestris pv. musacearum NCPPB4381]
 gi|294666562|ref|ZP_06731803.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|325914926|ref|ZP_08177258.1| ATP-dependent Clp protease proteolytic subunit ClpP [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325927441|ref|ZP_08188688.1| ATP-dependent Clp protease proteolytic subunit ClpP [Xanthomonas
           perforans 91-118]
 gi|25008307|sp|Q8PNI5|CLPP_XANAC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|67460159|sp|Q5H434|CLPP_XANOR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|90183187|sp|Q3BWQ1|CLPP_XANC5 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|110816521|sp|Q2P6Z0|CLPP_XANOM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706557|sp|B0RTF7|CLPP_XANCB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706558|sp|B2SMI3|CLPP_XANOP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|21107218|gb|AAM35956.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
           axonopodis pv. citri str. 306]
 gi|58425250|gb|AAW74287.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas oryzae
           pv. oryzae KACC10331]
 gi|78035067|emb|CAJ22712.1| ATP-dependent Clp protease [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|84366529|dbj|BAE67687.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas oryzae
           pv. oryzae MAFF 311018]
 gi|167734536|emb|CAP52746.1| ATP-dependent Clp protease [Xanthomonas campestris pv. campestris]
 gi|188522823|gb|ACD60768.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Xanthomonas
           oryzae pv. oryzae PXO99A]
 gi|292603706|gb|EFF47116.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|325538819|gb|EGD10483.1| ATP-dependent Clp protease proteolytic subunit ClpP [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325542191|gb|EGD13686.1| ATP-dependent Clp protease proteolytic subunit ClpP [Xanthomonas
           perforans 91-118]
          Length = 208

 Score =  282 bits (723), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 123/195 (63%), Positives = 164/195 (84%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           L LVPMVVEQT+RGER+YDIYSRLLKER++F+ G I+DHMA +I AQLLFLEA+NP+K+I
Sbjct: 8   LNLVPMVVEQTSRGERAYDIYSRLLKERLIFLVGPIDDHMANVIVAQLLFLEADNPEKDI 67

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGGVVTAGMAIYDTMQ+IKP +ST C+GQAASMG+LLL++G  G R+ALPN+R+
Sbjct: 68  SIYINSPGGVVTAGMAIYDTMQYIKPDVSTICVGQAASMGALLLASGAAGKRYALPNSRV 127

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DI+ HA++I+ ++ RLNEI  K+ G++ E + +  +RD+  SA +A
Sbjct: 128 MIHQPLGGFQGQATDIDIHAREILTLRSRLNEILAKHTGQSLETIARDTERDNFKSAVDA 187

Query: 196 CDWGVVDKVLMSRID 210
             +G+VD+VL  R +
Sbjct: 188 QAYGLVDQVLERRPE 202


>gi|145642383|ref|ZP_01797943.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae R3021]
 gi|145272926|gb|EDK12812.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae 22.4-21]
          Length = 193

 Score =  282 bits (723), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 123/193 (63%), Positives = 157/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++PMVVEQT+RGERSYDIYSRLLKER++F++G++ED MA LI AQLLFLE+E+P K+I
Sbjct: 1   MSVIPMVVEQTSRGERSYDIYSRLLKERVIFLSGEVEDRMANLIVAQLLFLESEDPTKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           ++YINSPGG VTAGMAIYDTMQFIK  I T C+GQA SMG+ LL+ G  G R ALPNAR+
Sbjct: 61  NIYINSPGGSVTAGMAIYDTMQFIKSDIRTLCIGQACSMGAFLLAGGTAGKRAALPNARV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQASDI+ HAQ+I+KIK  LN+    + G++ E +EK  DRD+ MSA EA
Sbjct: 121 MIHQPLGGFRGQASDIQIHAQEILKIKHTLNDRLAFHTGQSIERIEKDTDRDNFMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD+VL+ R
Sbjct: 181 QAYGLVDEVLVKR 193


>gi|293610272|ref|ZP_06692573.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827504|gb|EFF85868.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325124452|gb|ADY83975.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 201

 Score =  282 bits (723), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 124/193 (64%), Positives = 159/193 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVP+VVEQ++RGERS+DIYSRLL+ER++F+TG++ED+MA LI AQ+LFLEAENP K+I 
Sbjct: 9   ALVPVVVEQSSRGERSFDIYSRLLRERVIFLTGEVEDNMANLIVAQMLFLEAENPDKDIH 68

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGMAIYDTMQFIKP + T+CMGQAASMG+ LL+AG KG R+ L NAR++
Sbjct: 69  LYINSPGGSVTAGMAIYDTMQFIKPDVVTYCMGQAASMGAFLLNAGAKGKRYCLENARVM 128

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+ IK RLN +  ++ G+ YE V +  DRD+ M+A  A 
Sbjct: 129 IHQPLGGFRGQASDIEIHAREILFIKERLNRLMAEHSGQDYETVARDTDRDNFMTAQAAK 188

Query: 197 DWGVVDKVLMSRI 209
           ++G+VD+VL  R 
Sbjct: 189 EYGLVDQVLSKRP 201


>gi|85704731|ref|ZP_01035832.1| Protease subunit of ATP-dependent Clp protease [Roseovarius sp.
           217]
 gi|85670549|gb|EAQ25409.1| Protease subunit of ATP-dependent Clp protease [Roseovarius sp.
           217]
          Length = 210

 Score =  282 bits (723), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 130/209 (62%), Positives = 176/209 (84%), Gaps = 1/209 (0%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           KD  D+++  LVPMVVEQT+RGER+YDI+SRLLKERI+F++G + D M++LI AQLL LE
Sbjct: 2   KDPMDIYMNTLVPMVVEQTSRGERAYDIFSRLLKERIIFLSGPVHDGMSSLIVAQLLHLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AENP KEIS+YINSPGGVVT+G++IYDTMQ+IKP +ST  +GQAASMGSLLL+AGE GMR
Sbjct: 62  AENPSKEISMYINSPGGVVTSGLSIYDTMQYIKPKVSTLVVGQAASMGSLLLTAGEPGMR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           F+LPN+R+++HQPSGG+ GQA+DI  HA++  K+K RLNEIYV++ G+T ++VE+ L+RD
Sbjct: 122 FSLPNSRVMVHQPSGGYQGQATDIMIHARETQKLKDRLNEIYVRHTGQTLKKVEEALERD 181

Query: 188 HIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           + MS  EA  WG++D+++ +R  ++E  K
Sbjct: 182 NFMSPDEAKAWGLIDEIVANRDKVDEAKK 210


>gi|197105280|ref|YP_002130657.1| ATP-dependent Clp protease, proteolytic subunit [Phenylobacterium
           zucineum HLK1]
 gi|196478700|gb|ACG78228.1| ATP-dependent Clp protease, proteolytic subunit [Phenylobacterium
           zucineum HLK1]
          Length = 205

 Score =  282 bits (723), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 139/202 (68%), Positives = 169/202 (83%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D     LGLVPMVVEQT+RGER+YDI+SRLLK+RIVF+ G +ED MA+LICAQLL LEA
Sbjct: 2   RDPVTTALGLVPMVVEQTSRGERAYDIFSRLLKDRIVFLAGPVEDGMASLICAQLLHLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI +YINSPGGVVT+G+AIYDTMQ+IK P+ T C+G AASMGS LL AGEKG R 
Sbjct: 62  ENPKKEIQMYINSPGGVVTSGLAIYDTMQYIKSPVITLCLGMAASMGSFLLMAGEKGQRI 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           ALPN+RI++HQPSGG+SG+A+DI+RHA+DI+K KRRLNEIY K+ G+  E VE+TLDRD 
Sbjct: 122 ALPNSRIMVHQPSGGYSGKATDIQRHAEDIIKTKRRLNEIYAKHTGQPIEAVEETLDRDF 181

Query: 189 IMSASEACDWGVVDKVLMSRID 210
            M+A EA DWG+VD V   R +
Sbjct: 182 FMTAQEAKDWGLVDHVWEKRDN 203


>gi|187928950|ref|YP_001899437.1| ATP-dependent Clp protease proteolytic subunit [Ralstonia pickettii
           12J]
 gi|241663134|ref|YP_002981494.1| ATP-dependent Clp protease proteolytic subunit [Ralstonia pickettii
           12D]
 gi|309781948|ref|ZP_07676679.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ralstonia sp.
           5_7_47FAA]
 gi|187725840|gb|ACD27005.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ralstonia
           pickettii 12J]
 gi|240865161|gb|ACS62822.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ralstonia
           pickettii 12D]
 gi|308919292|gb|EFP64958.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ralstonia sp.
           5_7_47FAA]
          Length = 215

 Score =  282 bits (723), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 115/197 (58%), Positives = 156/197 (79%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E   LGLVPMVVEQ+ RGER+YDIYSRLLKER++F+ G++ D  A L+ AQLLFLE+ENP
Sbjct: 19  ETQGLGLVPMVVEQSGRGERAYDIYSRLLKERVIFMVGEVNDQTANLVVAQLLFLESENP 78

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+ISLYINSPGG V++G+A+YDTMQFIKP +ST CMG AASMG+ LL+AG KG R ALP
Sbjct: 79  DKDISLYINSPGGSVSSGLAMYDTMQFIKPDVSTLCMGMAASMGAFLLAAGAKGKRLALP 138

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+RI++HQP GG  GQASDIE  A++I+ ++ RLN +  +  G+  +++ +  DRD+ MS
Sbjct: 139 NSRIMIHQPLGGARGQASDIEIQAREILYLRERLNTVLSEVTGQPVDKIARDTDRDNFMS 198

Query: 192 ASEACDWGVVDKVLMSR 208
           + +A ++G++D+V+  R
Sbjct: 199 SEQAKEYGLIDQVIAKR 215


>gi|225568849|ref|ZP_03777874.1| hypothetical protein CLOHYLEM_04928 [Clostridium hylemonae DSM
           15053]
 gi|225162348|gb|EEG74967.1| hypothetical protein CLOHYLEM_04928 [Clostridium hylemonae DSM
           15053]
          Length = 193

 Score =  282 bits (723), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 111/193 (57%), Positives = 151/193 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLLK+RI+F+  ++ D  A++I AQLLFLEAE+P+K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLKDRIIFLGEEVTDVSASVIVAQLLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG V+AG+AIYDTMQ+IK  I T C+G AASMGS LL+ G KG R ALPNA I
Sbjct: 61  HLYINSPGGSVSAGLAIYDTMQYIKSDIETICIGMAASMGSFLLAGGTKGKRLALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I+  A+ I+K ++RLN+I  +N G+  + +    +RD+ MSA EA
Sbjct: 121 MIHQPSGGAQGQATEIQIAAEHILKTRQRLNQILAENTGQPLDVIRIDTERDNFMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D+V+ +R
Sbjct: 181 KAYGLIDEVIKNR 193


>gi|229164087|ref|ZP_04292023.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           R309803]
 gi|228619323|gb|EEK76213.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           R309803]
          Length = 193

 Score =  282 bits (723), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 106/193 (54%), Positives = 153/193 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFLE+++P+K+I
Sbjct: 1   MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG +TAGMAIYDTMQFIKP +ST C+G AASMG+ LL+AGEKG RFALPN+ +
Sbjct: 61  HIYINSPGGSITAGMAIYDTMQFIKPQVSTICIGMAASMGAFLLAAGEKGKRFALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN+I     G+  E +++  DRD+ M+A +A
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILFLREKLNQILADRTGQPLEVLQRDTDRDNFMTAEKA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++DK+  +R
Sbjct: 181 LEYGLIDKIFTNR 193


>gi|218248285|ref|YP_002373656.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
           sp. PCC 8801]
 gi|257060388|ref|YP_003138276.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
           sp. PCC 8802]
 gi|218168763|gb|ACK67500.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
           sp. PCC 8801]
 gi|256590554|gb|ACV01441.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
           sp. PCC 8802]
          Length = 201

 Score =  282 bits (723), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 101/192 (52%), Positives = 145/192 (75%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+E + RGER++DIYSRLL+ERIVF+  ++ D  A LI AQLLFLEAE+P K+I L
Sbjct: 1   MIPTVIETSGRGERAFDIYSRLLRERIVFLGQEVRDENANLIVAQLLFLEAEDPDKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG+ I+DTM  I+P +ST C+G AASMG+ LLSAG KG R +LPN+RI++
Sbjct: 61  YINSPGGSVSAGLGIFDTMNQIRPDVSTICIGLAASMGAFLLSAGTKGKRMSLPNSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+ +K+ LN+    + G+  +++ +  +RD  MSA +A +
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYLKQLLNQHLASHTGQPLDKIAEDTERDFFMSAEDALE 180

Query: 198 WGVVDKVLMSRI 209
           +G++D+V+  R 
Sbjct: 181 YGLIDQVINRRP 192


>gi|68249290|ref|YP_248402.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae 86-028NP]
 gi|161350016|ref|NP_438872.3| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae Rd KW20]
 gi|260581528|ref|ZP_05849336.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Haemophilus
           influenzae RdAW]
 gi|1168977|sp|P43867|CLPP_HAEIN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|81336285|sp|Q4QMK5|CLPP_HAEI8 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|1573716|gb|AAC22371.1| ATP-dependent Clp protease, proteolytic subunit (clpP) [Haemophilus
           influenzae Rd KW20]
 gi|68057489|gb|AAX87742.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           influenzae 86-028NP]
 gi|260091826|gb|EEW75781.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Haemophilus
           influenzae RdAW]
          Length = 193

 Score =  282 bits (723), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 124/193 (64%), Positives = 157/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++PMVVEQT+RGERSYDIYSRLLKER++F++G++ED MA LI AQLLFLE+E+P K+I
Sbjct: 1   MSVIPMVVEQTSRGERSYDIYSRLLKERVIFLSGEVEDRMANLIVAQLLFLESEDPTKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           ++YINSPGG VTAGMAIYDTMQFIKP I T C+GQA SMG+ LL+ G  G R ALPNAR+
Sbjct: 61  NIYINSPGGSVTAGMAIYDTMQFIKPDIRTLCIGQACSMGAFLLAGGTAGKRAALPNARV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQASDI+ HAQ+I+KIK  LN+    + G+  E +EK  DRD+ MSA EA
Sbjct: 121 MIHQPLGGFRGQASDIQIHAQEILKIKHTLNDRLAFHTGQGIERIEKDTDRDNFMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD+VL+ R
Sbjct: 181 QAYGLVDEVLVKR 193


>gi|262280902|ref|ZP_06058685.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter
           calcoaceticus RUH2202]
 gi|299771640|ref|YP_003733666.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter sp.
           DR1]
 gi|262257802|gb|EEY76537.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter
           calcoaceticus RUH2202]
 gi|298701728|gb|ADI92293.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter sp.
           DR1]
          Length = 201

 Score =  282 bits (723), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 124/193 (64%), Positives = 159/193 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVP+VVEQ++RGERS+DIYSRLL+ER++F+TG++ED+MA LI AQ+LFLEAENP K+I 
Sbjct: 9   ALVPVVVEQSSRGERSFDIYSRLLRERVIFLTGEVEDNMANLIVAQMLFLEAENPDKDIH 68

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGMAIYDTMQFIKP + T+CMGQAASMG+ LL+AG KG R+ L NAR++
Sbjct: 69  LYINSPGGSVTAGMAIYDTMQFIKPDVVTYCMGQAASMGAFLLNAGAKGKRYCLENARVM 128

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+ IK RLN +  ++ G+ YE V +  DRD+ M+A  A 
Sbjct: 129 IHQPLGGFRGQASDIEIHAREILFIKERLNRLMAEHSGQDYETVARDTDRDNFMTAQSAK 188

Query: 197 DWGVVDKVLMSRI 209
           ++G+VD+VL  R 
Sbjct: 189 EYGLVDQVLSKRP 201


>gi|70727122|ref|YP_254036.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           haemolyticus JCSC1435]
 gi|124013829|sp|Q4L4J5|CLPP_STAHJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|68447846|dbj|BAE05430.1| clpP [Staphylococcus haemolyticus JCSC1435]
          Length = 195

 Score =  282 bits (723), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 104/195 (53%), Positives = 147/195 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+E TNRGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL+A++ +K+I
Sbjct: 1   MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLQAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG AIYDT+Q IKP + T C+G AASMGS LL+AG KG RFALPNA +
Sbjct: 61  YLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A  I+K + +LN+I  +  G++ E+++K  DRD+ ++A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAANHILKTREKLNKILAERTGQSIEKIQKDTDRDNFLTADEA 180

Query: 196 CDWGVVDKVLMSRID 210
            ++G++D V+     
Sbjct: 181 KEYGLIDNVMQPEDK 195


>gi|78043074|ref|YP_359188.1| ATP-dependent Clp protease proteolytic subunit [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|90101405|sp|Q3AF96|CLPP_CARHZ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|77995189|gb|ABB14088.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 195

 Score =  282 bits (723), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 116/192 (60%), Positives = 161/192 (83%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+V+EQT+RGERSYDI+SRLLK+R +F+ G I+DH+A L+ AQ+LFLEAE+P+K+I L
Sbjct: 4   LVPIVIEQTSRGERSYDIWSRLLKDRTIFIGGPIDDHVANLVIAQMLFLEAEDPEKDIHL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+TAGMAIYDTMQ+IKP +ST C+GQAASMG+ LL+AG KG RF+LP ARI++
Sbjct: 64  YINSPGGVITAGMAIYDTMQYIKPDVSTICIGQAASMGAFLLAAGAKGKRFSLPYARIMI 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DI+ HA++I++++  LNE+  K+ G+  E++E+  +RD  MSA+EA +
Sbjct: 124 HQPLGGVQGQATDIDIHAREILRMRDMLNELLTKHTGQPKEKIERDTERDFFMSAAEAKE 183

Query: 198 WGVVDKVLMSRI 209
           +G++D+V+  R 
Sbjct: 184 YGIIDEVITVRK 195


>gi|26989024|ref|NP_744449.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas putida
           KT2440]
 gi|148548677|ref|YP_001268779.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas putida
           F1]
 gi|38257487|sp|Q88KJ0|CLPP_PSEPK RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166214701|sp|A5W635|CLPP_PSEP1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|24983847|gb|AAN67913.1|AE016423_8 ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
           putida KT2440]
 gi|148512735|gb|ABQ79595.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pseudomonas
           putida F1]
 gi|171362771|dbj|BAG15849.1| probable ATP-dependent clp protease [Pseudomonas putida]
          Length = 213

 Score =  282 bits (723), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 121/192 (63%), Positives = 155/192 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+EQ+ RGER+YDIYSRLLKER++F+ G +ED+MA L+ AQLLFLEAENP K+I 
Sbjct: 18  GLVPMVIEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLVVAQLLFLEAENPDKDIH 77

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+ LL+AG KG R  LPN+R++
Sbjct: 78  LYINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAAGAKGKRHCLPNSRVM 137

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQA+DIE HAQ+I+ IK RLNE+   + G+  E +++  +RD+ MSAS A 
Sbjct: 138 IHQPLGGFQGQATDIEIHAQEILNIKARLNELLAYHTGQDLETIKRDTERDNFMSASRAA 197

Query: 197 DWGVVDKVLMSR 208
           ++G++D V   R
Sbjct: 198 EYGLIDSVYDKR 209


>gi|224475912|ref|YP_002633518.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           carnosus subsp. carnosus TM300]
 gi|254763800|sp|B9DJL4|CLPP_STACT RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|222420519|emb|CAL27333.1| putative ATP-dependent Clp protease proteolytic subunit
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 194

 Score =  282 bits (722), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 105/194 (54%), Positives = 148/194 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+E TNRGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL+A++ +K+I
Sbjct: 1   MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLQAQDAEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG AIYDT+Q IKP + T C+G AASMGS LL+AG KG RFALPNA +
Sbjct: 61  YLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A  I+K + +LN+I  +  G++ E++EK  DRD+ ++A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAATHILKTRAKLNKILAERTGQSIEQIEKDTDRDNFLTADEA 180

Query: 196 CDWGVVDKVLMSRI 209
            ++G++D+V+    
Sbjct: 181 KEYGLIDEVMQPEK 194


>gi|325291111|ref|YP_004267292.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324966512|gb|ADY57291.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 202

 Score =  282 bits (722), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 114/199 (57%), Positives = 156/199 (78%), Gaps = 1/199 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQTNRGERSYDIYSRLLK+RI+F+ GQ++D+MA LI AQLLFL+AE+P+K+I L
Sbjct: 4   LVPMVVEQTNRGERSYDIYSRLLKDRIIFLGGQVDDYMANLIVAQLLFLDAEDPEKDIFL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG ++AGMAIYDTMQ ++  + T C+G AASMG+ LL++G KG R ALPN+ IL+
Sbjct: 64  YINSPGGSISAGMAIYDTMQHVRADVHTICVGLAASMGAFLLASGAKGKRTALPNSEILI 123

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP  GG SGQA++IE HA+ I+++K R+N +  +  G+  E +E+  DRD  ++A EA 
Sbjct: 124 HQPLLGGLSGQATEIEIHAKHILRVKERMNRLLAEMTGQPVERIEQDTDRDRYLTAQEAK 183

Query: 197 DWGVVDKVLMSRIDIEEKS 215
           ++G+VD++L     + +K 
Sbjct: 184 EYGLVDQILEKSEQVAKKK 202


>gi|307942062|ref|ZP_07657413.1| Clp protease [Roseibium sp. TrichSKD4]
 gi|307774348|gb|EFO33558.1| Clp protease [Roseibium sp. TrichSKD4]
          Length = 211

 Score =  282 bits (722), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 140/209 (66%), Positives = 181/209 (86%), Gaps = 1/209 (0%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           KD  D+++  LVPMVVEQTNRGERS+DIYSRLLKERI+F+TG IEDH+ATL+CAQLLFLE
Sbjct: 2   KDPADIYMNTLVPMVVEQTNRGERSFDIYSRLLKERIIFLTGPIEDHVATLVCAQLLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           A+NP KEI++YINSPGG+VT+G+AIYDTMQFI+P +ST C+GQAASMGSLLL+ GEK MR
Sbjct: 62  ADNPSKEIAIYINSPGGLVTSGLAIYDTMQFIRPAVSTLCIGQAASMGSLLLAGGEKDMR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           F+LPNAR+++HQPSGGF GQA+DI  HAQ+I+ +KRRLNEIYVK+ G++ +EVE+ L+RD
Sbjct: 122 FSLPNARVMVHQPSGGFRGQAADIMLHAQEILAMKRRLNEIYVKHTGQSLDEVEEALERD 181

Query: 188 HIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           + M+A +A ++G+VD V+  R  +   S+
Sbjct: 182 NFMTAEKAKEFGIVDSVITDRASLHSDSE 210


>gi|62290024|ref|YP_221817.1| ATP-dependent Clp protease proteolytic subunit [Brucella abortus
           bv. 1 str. 9-941]
 gi|82699951|ref|YP_414525.1| ATP-dependent Clp protease proteolytic subunit [Brucella melitensis
           biovar Abortus 2308]
 gi|161619061|ref|YP_001592948.1| ATP-dependent Clp protease proteolytic subunit [Brucella canis ATCC
           23365]
 gi|163843378|ref|YP_001627782.1| ATP-dependent Clp protease proteolytic subunit [Brucella suis ATCC
           23445]
 gi|189024264|ref|YP_001935032.1| Clp protease [Brucella abortus S19]
 gi|254689336|ref|ZP_05152590.1| ATP-dependent Clp protease proteolytic subunit [Brucella abortus
           bv. 6 str. 870]
 gi|254693820|ref|ZP_05155648.1| ATP-dependent Clp protease proteolytic subunit [Brucella abortus
           bv. 3 str. Tulya]
 gi|254697469|ref|ZP_05159297.1| ATP-dependent Clp protease proteolytic subunit [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|254701854|ref|ZP_05163682.1| ATP-dependent Clp protease proteolytic subunit [Brucella suis bv. 5
           str. 513]
 gi|254706705|ref|ZP_05168533.1| ATP-dependent Clp protease proteolytic subunit [Brucella
           pinnipedialis M163/99/10]
 gi|254710187|ref|ZP_05171998.1| ATP-dependent Clp protease proteolytic subunit [Brucella
           pinnipedialis B2/94]
 gi|254714185|ref|ZP_05175996.1| ATP-dependent Clp protease proteolytic subunit [Brucella ceti
           M644/93/1]
 gi|254717620|ref|ZP_05179431.1| ATP-dependent Clp protease proteolytic subunit [Brucella ceti
           M13/05/1]
 gi|254719174|ref|ZP_05180985.1| ATP-dependent Clp protease proteolytic subunit [Brucella sp. 83/13]
 gi|254730366|ref|ZP_05188944.1| ATP-dependent Clp protease proteolytic subunit [Brucella abortus
           bv. 4 str. 292]
 gi|256031681|ref|ZP_05445295.1| ATP-dependent Clp protease proteolytic subunit [Brucella
           pinnipedialis M292/94/1]
 gi|256061193|ref|ZP_05451345.1| ATP-dependent Clp protease proteolytic subunit [Brucella neotomae
           5K33]
 gi|256159837|ref|ZP_05457570.1| ATP-dependent Clp protease proteolytic subunit [Brucella ceti
           M490/95/1]
 gi|256255083|ref|ZP_05460619.1| ATP-dependent Clp protease proteolytic subunit [Brucella ceti
           B1/94]
 gi|256257582|ref|ZP_05463118.1| ATP-dependent Clp protease proteolytic subunit [Brucella abortus
           bv. 9 str. C68]
 gi|260168815|ref|ZP_05755626.1| ATP-dependent Clp protease proteolytic subunit [Brucella sp. F5/99]
 gi|260546576|ref|ZP_05822315.1| clp protease [Brucella abortus NCTC 8038]
 gi|260566355|ref|ZP_05836825.1| clp protease [Brucella suis bv. 4 str. 40]
 gi|260754852|ref|ZP_05867200.1| endopeptidase Clp [Brucella abortus bv. 6 str. 870]
 gi|260758069|ref|ZP_05870417.1| endopeptidase Clp [Brucella abortus bv. 4 str. 292]
 gi|260761893|ref|ZP_05874236.1| endopeptidase Clp [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883864|ref|ZP_05895478.1| ClpP [Brucella abortus bv. 9 str. C68]
 gi|261214103|ref|ZP_05928384.1| endopeptidase Clp [Brucella abortus bv. 3 str. Tulya]
 gi|261219456|ref|ZP_05933737.1| ATP-dependent Clp protease [Brucella ceti M13/05/1]
 gi|261222276|ref|ZP_05936557.1| ClpP [Brucella ceti B1/94]
 gi|261314167|ref|ZP_05953364.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261317744|ref|ZP_05956941.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261321952|ref|ZP_05961149.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|261325200|ref|ZP_05964397.1| ClpP [Brucella neotomae 5K33]
 gi|261752415|ref|ZP_05996124.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brucella suis
           bv. 5 str. 513]
 gi|261758300|ref|ZP_06002009.1| clp protease [Brucella sp. F5/99]
 gi|265984170|ref|ZP_06096905.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|265988775|ref|ZP_06101332.1| ClpP [Brucella pinnipedialis M292/94/1]
 gi|265998240|ref|ZP_06110797.1| ClpP [Brucella ceti M490/95/1]
 gi|294852448|ref|ZP_06793121.1| Clp protease [Brucella sp. NVSL 07-0026]
 gi|306838166|ref|ZP_07471022.1| ATP-dependent Clp protease proteolytic subunit [Brucella sp. NF
           2653]
 gi|306841836|ref|ZP_07474518.1| ATP-dependent Clp protease proteolytic subunit [Brucella sp. BO2]
 gi|306843974|ref|ZP_07476569.1| ATP-dependent Clp protease proteolytic subunit [Brucella sp. BO1]
 gi|18203228|sp|Q9L7X6|CLPP_BRUAB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|90101403|sp|Q2YPX1|CLPP_BRUA2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|189082449|sp|A9M5C2|CLPP_BRUC2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|189082450|sp|B0CGR1|CLPP_BRUSI RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706442|sp|B2S5W1|CLPP_BRUA1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|6942106|gb|AAF32318.1|AF218420_1 ClpP [Brucella abortus]
 gi|62196156|gb|AAX74456.1| ClpP, ATP-dependent Clp protease, proteolytic subunit ClpP
           [Brucella abortus bv. 1 str. 9-941]
 gi|82616052|emb|CAJ11088.1| Clp protease [Brucella melitensis biovar Abortus 2308]
 gi|161335872|gb|ABX62177.1| ATP-dependent Clp protease proteolytic subunit [Brucella canis ATCC
           23365]
 gi|163674101|gb|ABY38212.1| ATP-dependent Clp protease proteolytic subunit [Brucella suis ATCC
           23445]
 gi|189019836|gb|ACD72558.1| Clp protease [Brucella abortus S19]
 gi|260095626|gb|EEW79503.1| clp protease [Brucella abortus NCTC 8038]
 gi|260155873|gb|EEW90953.1| clp protease [Brucella suis bv. 4 str. 40]
 gi|260668387|gb|EEX55327.1| endopeptidase Clp [Brucella abortus bv. 4 str. 292]
 gi|260672325|gb|EEX59146.1| endopeptidase Clp [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674960|gb|EEX61781.1| endopeptidase Clp [Brucella abortus bv. 6 str. 870]
 gi|260873392|gb|EEX80461.1| ClpP [Brucella abortus bv. 9 str. C68]
 gi|260915710|gb|EEX82571.1| endopeptidase Clp [Brucella abortus bv. 3 str. Tulya]
 gi|260920860|gb|EEX87513.1| ClpP [Brucella ceti B1/94]
 gi|260924545|gb|EEX91113.1| ATP-dependent Clp protease [Brucella ceti M13/05/1]
 gi|261294642|gb|EEX98138.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|261296967|gb|EEY00464.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261301180|gb|EEY04677.1| ClpP [Brucella neotomae 5K33]
 gi|261303193|gb|EEY06690.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261738284|gb|EEY26280.1| clp protease [Brucella sp. F5/99]
 gi|261742168|gb|EEY30094.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brucella suis
           bv. 5 str. 513]
 gi|262552708|gb|EEZ08698.1| ClpP [Brucella ceti M490/95/1]
 gi|264660972|gb|EEZ31233.1| ClpP [Brucella pinnipedialis M292/94/1]
 gi|264662762|gb|EEZ33023.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|294821037|gb|EFG38036.1| Clp protease [Brucella sp. NVSL 07-0026]
 gi|306275729|gb|EFM57453.1| ATP-dependent Clp protease proteolytic subunit [Brucella sp. BO1]
 gi|306288063|gb|EFM59460.1| ATP-dependent Clp protease proteolytic subunit [Brucella sp. BO2]
 gi|306406756|gb|EFM62979.1| ATP-dependent Clp protease proteolytic subunit [Brucella sp. NF
           2653]
          Length = 209

 Score =  282 bits (722), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 148/208 (71%), Positives = 183/208 (87%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  +  + LVPMVVEQTNRGER+YDI+SRLLKERI+FV G +ED M+ L+CAQLLFLEA
Sbjct: 2   RDPIETVMNLVPMVVEQTNRGERAYDIFSRLLKERIIFVNGPVEDGMSMLVCAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI++YINSPGGVVT+GMAIYDTMQFI+PP+ST CMGQAASMGSLLL+AG  G R+
Sbjct: 62  ENPKKEINMYINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGATGHRY 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           ALPNARI++HQPSGGF GQASDIERHAQDI+K+KRRLNEIYVK+ G+ Y+ +E+TLDRDH
Sbjct: 122 ALPNARIMVHQPSGGFQGQASDIERHAQDIIKMKRRLNEIYVKHTGRDYDTIERTLDRDH 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIEEKSK 216
            M+A EA ++G++DKV+ +R    ++SK
Sbjct: 182 FMTAQEALEFGLIDKVVEARDVSADESK 209


>gi|329121861|ref|ZP_08250476.1| ATP-dependent Clp protease, protease subunit [Dialister
           micraerophilus DSM 19965]
 gi|327467799|gb|EGF13291.1| ATP-dependent Clp protease, protease subunit [Dialister
           micraerophilus DSM 19965]
          Length = 205

 Score =  282 bits (722), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 115/206 (55%), Positives = 160/206 (77%), Gaps = 1/206 (0%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
             E + +  VP+VVEQT+ GERSYDIYSRLLK+RI+F+ GQIEDHMA +I AQLLFLEAE
Sbjct: 1   MKEGIIMAYVPIVVEQTSHGERSYDIYSRLLKDRIIFLDGQIEDHMANVIIAQLLFLEAE 60

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           +P K+I LYINSPGGVVTAGMAIYDTMQ+I+P +ST C+G  ASM ++LL++G KG RFA
Sbjct: 61  DPDKDIHLYINSPGGVVTAGMAIYDTMQYIRPDVSTICIGSCASMAAVLLTSGAKGKRFA 120

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LP++ +++HQP GG  GQA++IE HA++I++++  LN I  K+ G+  + ++K  +RD+ 
Sbjct: 121 LPHSNVMIHQPLGGVQGQATEIEIHAREILRLRDELNGILAKHTGQPLDVIKKDTERDNF 180

Query: 190 MSASEACDWGVVDKVLMSRIDIEEKS 215
           M+A  A  +G++DK+L  R ++  K 
Sbjct: 181 MTAENALKYGLIDKILT-RNELTAKD 205


>gi|218133242|ref|ZP_03462046.1| hypothetical protein BACPEC_01107 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992115|gb|EEC58119.1| hypothetical protein BACPEC_01107 [Bacteroides pectinophilus ATCC
           43243]
          Length = 193

 Score =  282 bits (722), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 110/193 (56%), Positives = 145/193 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLLK+RI+F+  ++ D  A+LI AQLLFLE+E+P K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLKDRIIFLGEEVTDVSASLIVAQLLFLESEDPGKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           + YINSPGG VTAGMAIYDTM ++K  +ST C+G AASMG+ LLS G KG R ALPNA I
Sbjct: 61  NFYINSPGGSVTAGMAIYDTMNYVKCDVSTICIGMAASMGAFLLSGGTKGKRLALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+DI+  +  I+K + +LN I   N GK  + +    +RD+ MSA EA
Sbjct: 121 MIHQPSGGAQGQATDIKIVSDHIIKTRHKLNTILAANTGKPLDVIAVDTERDNYMSAQEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++D V+  R
Sbjct: 181 VEYGLIDSVIEKR 193


>gi|326391008|ref|ZP_08212557.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325992953|gb|EGD51396.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 195

 Score =  282 bits (722), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 112/195 (57%), Positives = 151/195 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQTNRGERSYDI+SRLLK+RIVF+  +I D  A+L+ AQLLFLEAE+P K+I
Sbjct: 1   MSLVPIVVEQTNRGERSYDIFSRLLKDRIVFLGEEINDTTASLVIAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +TAG AIYDTMQ+IKP + T C+G AASM + LL+AG KG RFALPN+ I
Sbjct: 61  WLYINSPGGSITAGFAIYDTMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+ HA+ I+K++ +L++I  +N G+  E+++   +RD  M A EA
Sbjct: 121 MIHQPLGGMQGQATDIKIHAERILKLRDKLDKILAENTGQPIEKIKADTERDFFMDAEEA 180

Query: 196 CDWGVVDKVLMSRID 210
             +G++D+VL+    
Sbjct: 181 KAYGIIDEVLIRNKK 195


>gi|317050717|ref|YP_004111833.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Desulfurispirillum indicum S5]
 gi|316945801|gb|ADU65277.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Desulfurispirillum indicum S5]
          Length = 196

 Score =  282 bits (722), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 120/193 (62%), Positives = 161/193 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQT RGERSYDIYSRLLK+RIVF+  QI+D ++ +I AQLLFLEAE+P+K+I
Sbjct: 1   MPLVPIVVEQTARGERSYDIYSRLLKDRIVFLGTQIDDQISNVIIAQLLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVTAGMAIYDTMQ+I+P +ST C+GQAASMG++LL+AGEKG RFALP++RI
Sbjct: 61  FLYINSPGGVVTAGMAIYDTMQYIRPKVSTICVGQAASMGAVLLAAGEKGKRFALPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DIE  A++I++IK  LN+I V++ G   E++++  DRD  M+  +A
Sbjct: 121 MIHQPLGGAQGQATDIEIQAREILRIKEMLNDILVRHTGADLEKIQRDTDRDFFMTGEQA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D+V+ SR
Sbjct: 181 RAYGIIDEVIQSR 193


>gi|114321437|ref|YP_743120.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|122311052|sp|Q0A6A7|CLPP_ALHEH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|114227831|gb|ABI57630.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 214

 Score =  282 bits (722), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 125/214 (58%), Positives = 163/214 (76%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS E       E    GLVPMVVEQ+ RGER+YDIYSRLLKER++F+ G +EDHMA LI 
Sbjct: 1   MSDERREGLAPEIEATGLVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDHMANLIV 60

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE+ENP K+I +YINSPGG VTAG+AIYDTMQFIKP +ST C+GQAASMG+LLL+
Sbjct: 61  AQLLFLESENPDKDIHIYINSPGGAVTAGLAIYDTMQFIKPDVSTVCIGQAASMGALLLT 120

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
            G KG R+ALPN+R+++HQP GGF GQA+D++ HA++I+ ++ RLN I   + G+  E +
Sbjct: 121 GGTKGKRYALPNSRMMIHQPLGGFQGQATDVDIHAREILDMRDRLNRIMAHHTGQDMETI 180

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
            +  DRD+ MS   AC++G+VD VL  R  +++ 
Sbjct: 181 ARDTDRDNFMSPDTACEYGLVDAVLADRKALDQA 214


>gi|329122525|ref|ZP_08251109.1| ATP-dependent Clp protease, protease subunit [Haemophilus aegyptius
           ATCC 11116]
 gi|327473154|gb|EGF18577.1| ATP-dependent Clp protease, protease subunit [Haemophilus aegyptius
           ATCC 11116]
          Length = 211

 Score =  282 bits (722), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 124/193 (64%), Positives = 158/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++PMVVEQT+RGERSYDIYSRLLKER++F++G++ED MA LI AQLLFLE+E+P K+I
Sbjct: 19  MSVIPMVVEQTSRGERSYDIYSRLLKERVIFLSGEVEDRMANLIVAQLLFLESEDPTKDI 78

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           ++YINSPGG VTAGMAIYDTMQFIKP I T C+GQA SMG+ LL+ G  G R ALPNAR+
Sbjct: 79  NIYINSPGGSVTAGMAIYDTMQFIKPDIRTLCIGQACSMGAFLLAGGTAGKRAALPNARV 138

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQASDI+ HAQ+I+KIK  LN+    + G++ E +EK  DRD+ MSA EA
Sbjct: 139 MIHQPLGGFRGQASDIQIHAQEILKIKHTLNDRLAFHTGQSIERIEKDTDRDNFMSAEEA 198

Query: 196 CDWGVVDKVLMSR 208
             +G+VD+VL+ R
Sbjct: 199 QVYGLVDEVLVKR 211


>gi|138896648|ref|YP_001127101.1| ATP-dependent Clp protease proteolytic subunit [Geobacillus
           thermodenitrificans NG80-2]
 gi|196249350|ref|ZP_03148048.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus
           sp. G11MC16]
 gi|166201825|sp|A4ISQ2|CLPP_GEOTN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|134268161|gb|ABO68356.1| ATP-dependent Clp protease [Geobacillus thermodenitrificans NG80-2]
 gi|196211107|gb|EDY05868.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus
           sp. G11MC16]
          Length = 196

 Score =  282 bits (722), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 111/195 (56%), Positives = 153/195 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RI+F+   I+D +A  I +QLLFL AE+P+K+I
Sbjct: 1   MYLIPTVIEQTNRGERAYDIYSRLLKDRIIFLGSPIDDQVANSIVSQLLFLAAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG +TAG+AIYDTMQFIKP +ST C+G AASMG+ LL+AG KG RFALPN+ +
Sbjct: 61  SLYINSPGGSITAGLAIYDTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN I  +N G+  E +E+  DRD+ M+A +A
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILFLRDKLNRILAENTGQPIEVIERDTDRDNFMTAQKA 180

Query: 196 CDWGVVDKVLMSRID 210
            ++G++D+VL    D
Sbjct: 181 QEYGIIDRVLTRLED 195


>gi|33862335|ref|NP_893895.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9313]
 gi|67460519|sp|Q7V992|CLPP1_PROMM RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|33640448|emb|CAE20237.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9313]
          Length = 224

 Score =  282 bits (722), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 101/191 (52%), Positives = 144/191 (75%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G++P VVEQ+ RGER++DIYSRLL+ERI+F+   ++D +A  + AQ+LFLEAE+P+K+I 
Sbjct: 24  GILPTVVEQSGRGERAFDIYSRLLRERIIFLGTGVDDQVADALVAQMLFLEAEDPEKDIQ 83

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VTAG+AIYDTMQ + P + T C G AASMG+ LL  G KG R ALPNARI+
Sbjct: 84  IYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLCGGTKGKRLALPNARIM 143

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA DIE  A++I+ +K  LN +  ++ G+   ++ +  DRDH +S ++A 
Sbjct: 144 IHQPLGGAQGQAVDIEIQAKEILFLKETLNGLLAEHTGQPLNKIAEDTDRDHFLSPAKAV 203

Query: 197 DWGVVDKVLMS 207
           ++G++D+V+ S
Sbjct: 204 EYGLIDRVVDS 214


>gi|319404099|emb|CBI77689.1| ATP-dependent Clp protease, proteolytic subunit [Bartonella
           rochalimae ATCC BAA-1498]
 gi|319407112|emb|CBI80749.1| ATP-dependent Clp protease, proteolytic subunit [Bartonella sp.
           1-1C]
          Length = 210

 Score =  282 bits (722), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 148/207 (71%), Positives = 179/207 (86%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           D     L LVPMVVEQTNRGER+YDI+SRLLKERI+F+ G +ED+MA L+CAQLLFLEAE
Sbjct: 3   DPVKKVLSLVPMVVEQTNRGERAYDIFSRLLKERIIFINGPVEDNMAMLVCAQLLFLEAE 62

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP+KEI+LYINSPGGVVT+GMAIYDTMQFI+P +ST CMGQAASMGSLLL+AG  G RFA
Sbjct: 63  NPKKEINLYINSPGGVVTSGMAIYDTMQFIRPSVSTLCMGQAASMGSLLLTAGATGRRFA 122

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPNARI++HQPSGGF GQASDIERHAQDI+K+KRRLNEIYV++ G++YE +E TLDRDH 
Sbjct: 123 LPNARIMVHQPSGGFQGQASDIERHAQDIIKMKRRLNEIYVQHTGQSYEVIENTLDRDHF 182

Query: 190 MSASEACDWGVVDKVLMSRIDIEEKSK 216
           M+A E+  +G++D V+  R + E++ K
Sbjct: 183 MTAEESKQFGLIDDVIQYRAETEKEEK 209


>gi|239831859|ref|ZP_04680188.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ochrobactrum
           intermedium LMG 3301]
 gi|239824126|gb|EEQ95694.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ochrobactrum
           intermedium LMG 3301]
          Length = 230

 Score =  282 bits (722), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 149/208 (71%), Positives = 183/208 (87%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  +  + LVPMVVEQTNRGER+YDI+SRLLKERI+FV G +ED M+ L+CAQLLFLEA
Sbjct: 23  RDPIETVMNLVPMVVEQTNRGERAYDIFSRLLKERIIFVNGPVEDGMSMLVCAQLLFLEA 82

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI++YINSPGGVVT+GMAIYDTMQFI+PP+ST CMGQAASMGSLLL+AG  G R+
Sbjct: 83  ENPKKEINMYINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGATGQRY 142

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           ALPNARI++HQPSGGF GQASDIERHAQDI+K+KRRLNEIYVK+ G+ YE +E+TLDRDH
Sbjct: 143 ALPNARIMVHQPSGGFQGQASDIERHAQDIIKMKRRLNEIYVKHTGRDYETIERTLDRDH 202

Query: 189 IMSASEACDWGVVDKVLMSRIDIEEKSK 216
            M+A EA ++G++DKV+ +R    ++SK
Sbjct: 203 FMTAQEALEFGLIDKVVEARDVSADESK 230


>gi|119512812|ref|ZP_01631880.1| Peptidase S14, ClpP [Nodularia spumigena CCY9414]
 gi|119462534|gb|EAW43503.1| Peptidase S14, ClpP [Nodularia spumigena CCY9414]
          Length = 232

 Score =  282 bits (722), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 99/190 (52%), Positives = 144/190 (75%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+VVEQ+ RGER++DIYSRLL+ERI+F+  Q+++ +A LI AQLLFL++E+ +K+I L
Sbjct: 30  MIPIVVEQSGRGERAFDIYSRLLRERIIFLGQQVDNEIANLIVAQLLFLDSEDSEKDIYL 89

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AGM I+DTM+ I+P + T C G  ASMG+ LLSAG KG R +LP++RI++
Sbjct: 90  YINSPGGSVMAGMGIFDTMKHIRPDVCTICTGLGASMGAFLLSAGAKGKRMSLPHSRIMI 149

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+  K+RLNE   ++ G+  E + +  +RD  MS  EA +
Sbjct: 150 HQPLGGAQGQATDIEIQAREILYHKQRLNEYLAEHTGQPIERIAEDTERDFFMSPEEAKE 209

Query: 198 WGVVDKVLMS 207
           +G++D+V+  
Sbjct: 210 YGLIDQVIDR 219


>gi|20807119|ref|NP_622290.1| ATP-dependent Clp protease proteolytic subunit [Thermoanaerobacter
           tengcongensis MB4]
 gi|20515613|gb|AAM23894.1| Protease subunit of ATP-dependent Clp proteases [Thermoanaerobacter
           tengcongensis MB4]
          Length = 198

 Score =  282 bits (722), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 108/194 (55%), Positives = 154/194 (79%)

Query: 14  VFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQK 73
           +F+ LVP+VVEQTNRGER+YDI+SRLLK+RIVF+  +I D  A+L+ AQ+LFLEAE+P K
Sbjct: 2   IFMSLVPIVVEQTNRGERAYDIFSRLLKDRIVFLGDEINDTTASLVIAQMLFLEAEDPDK 61

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I LYINSPGG +TAG+AIYDTMQ+IKP + T C+G AASM + LL+AG KG RFALPN+
Sbjct: 62  DIWLYINSPGGSITAGLAIYDTMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNS 121

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            I++HQP GG  GQA+DI+ HA+ +++++ +L  I  +N G+  E+++  ++RD+ M+A 
Sbjct: 122 EIMIHQPWGGMQGQATDIKIHAERLLRLRDKLERILSENTGQPLEKIKADMERDYFMTAE 181

Query: 194 EACDWGVVDKVLMS 207
           EA  +G++D +L+ 
Sbjct: 182 EAKTYGIIDDILVR 195


>gi|160933529|ref|ZP_02080917.1| hypothetical protein CLOLEP_02375 [Clostridium leptum DSM 753]
 gi|156867406|gb|EDO60778.1| hypothetical protein CLOLEP_02375 [Clostridium leptum DSM 753]
          Length = 201

 Score =  282 bits (722), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 116/195 (59%), Positives = 150/195 (76%)

Query: 14  VFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQK 73
             + LVP VVEQT+RGERSYDI+SRLL +RIV +T ++ D  A+L+ AQLL+LE ++P K
Sbjct: 7   PNMSLVPYVVEQTSRGERSYDIFSRLLNDRIVMLTEEVNDTSASLVVAQLLYLEGQDPTK 66

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +ISLYINSPGG VTAGM+IYDTMQ+IK  +ST CMG AASMG+ LL+AG KG R ALPN+
Sbjct: 67  DISLYINSPGGSVTAGMSIYDTMQYIKCDVSTICMGMAASMGAFLLAAGAKGKRMALPNS 126

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            I++HQPSGG  GQA+DI  HA  I + K++LNEI  +  G+  E +E+  +RD+ MSA 
Sbjct: 127 DIMIHQPSGGAQGQATDILIHANHIARTKKKLNEILAERTGQPLEVIERDTERDNFMSAQ 186

Query: 194 EACDWGVVDKVLMSR 208
           EA D+G+VDKV+  R
Sbjct: 187 EAADYGLVDKVIYKR 201


>gi|254455562|ref|ZP_05068991.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Candidatus
           Pelagibacter sp. HTCC7211]
 gi|207082564|gb|EDZ59990.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Candidatus
           Pelagibacter sp. HTCC7211]
          Length = 203

 Score =  282 bits (722), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 125/192 (65%), Positives = 164/192 (85%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQ+N+GER+YDIYSRLLKERI+F+TGQI D++A+L+ AQLLFLEAE+P+KEI 
Sbjct: 11  TLVPMVVEQSNKGERAYDIYSRLLKERIIFLTGQINDNVASLVTAQLLFLEAEDPKKEIY 70

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG+VTAG+ IYDTMQ++KP IST C+GQAASMGS LL+AG KG RF+LPN+R++
Sbjct: 71  LYINSPGGLVTAGLGIYDTMQYVKPDISTLCIGQAASMGSFLLAAGTKGKRFSLPNSRVM 130

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPS GF GQ +DIE HA ++  +K+RLNEIY K+ GK+ +EV+  L+RD+ M+A  A 
Sbjct: 131 VHQPSAGFQGQVTDIEIHANEVSSLKKRLNEIYSKHTGKSVDEVKAALERDNFMTADVAK 190

Query: 197 DWGVVDKVLMSR 208
           D+G++D+V+  R
Sbjct: 191 DFGLIDEVVEKR 202


>gi|223938520|ref|ZP_03630412.1| Endopeptidase Clp [bacterium Ellin514]
 gi|223892782|gb|EEF59251.1| Endopeptidase Clp [bacterium Ellin514]
          Length = 215

 Score =  282 bits (722), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 114/194 (58%), Positives = 151/194 (77%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQT RGER YDIYSRLL +RIVF+   ++D +A LI AQLLFL+  +P+K+I L
Sbjct: 10  LVPMVVEQTGRGERGYDIYSRLLVDRIVFLGTPVDDMVANLIIAQLLFLQMSDPKKDIHL 69

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+AIYDTMQF+   ++T+C+GQAASMG++LL  G KG R+ALPNA I++
Sbjct: 70  YINSPGGSVTAGLAIYDTMQFLTCDVNTYCIGQAASMGAVLLCGGTKGKRYALPNANIMI 129

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQ  GG  GQASD+E   + ++++K+RLN I  K+ GK  E+VEK  DRD+ M++ EA  
Sbjct: 130 HQVLGGAEGQASDVEIRVKYMLRLKQRLNGIISKHTGKPIEQVEKDCDRDNFMTSDEAKA 189

Query: 198 WGVVDKVLMSRIDI 211
           +G+VD+V+ SR +I
Sbjct: 190 YGLVDEVVQSRKEI 203


>gi|89896100|ref|YP_519587.1| hypothetical protein DSY3354 [Desulfitobacterium hafniense Y51]
 gi|219670517|ref|YP_002460952.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Desulfitobacterium hafniense DCB-2]
 gi|116243113|sp|Q24S49|CLPP2_DESHY RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|89335548|dbj|BAE85143.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219540777|gb|ACL22516.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Desulfitobacterium hafniense DCB-2]
          Length = 202

 Score =  282 bits (722), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 114/193 (59%), Positives = 151/193 (78%), Gaps = 3/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMV+EQTNRGERSYDIYSRLLK+RI+F+ G + D +A L+ AQ+LFLEAE+P+K+I L
Sbjct: 4   LVPMVIEQTNRGERSYDIYSRLLKDRIIFLGGPVTDDVANLVVAQMLFLEAEDPEKDIFL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG ++AGMAIYDTMQ+I+  + T C+G AASMG+ LL+AG KG R ALPNA IL+
Sbjct: 64  YINSPGGSISAGMAIYDTMQYIRADVHTICVGLAASMGAFLLTAGAKGKRQALPNAEILI 123

Query: 138 HQP---SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           HQP    GG SGQA++IE HA+ ++++K R+N I  +  G+T E +E   DRD  M+A E
Sbjct: 124 HQPLIGGGGISGQATEIEIHAKHLLRVKERMNRILAERTGQTIERIEADTDRDRYMTAEE 183

Query: 195 ACDWGVVDKVLMS 207
           A ++G++D+VL  
Sbjct: 184 AKEYGLIDEVLEK 196


>gi|297569273|ref|YP_003690617.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296925188|gb|ADH85998.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 200

 Score =  282 bits (722), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 112/200 (56%), Positives = 160/200 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT RGERSYDIYSRLLKERI+F+   + D +A +I AQ+LFLEA++P K+I
Sbjct: 1   MSLIPFVIEQTPRGERSYDIYSRLLKERIIFLGTGVNDDVANVIIAQMLFLEADDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           + YINSPGGVVTAG+AIYDTM++IK  ++T C+GQAASMG++LL+AG +G R+ALPN+RI
Sbjct: 61  TFYINSPGGVVTAGLAIYDTMRYIKCDVATLCLGQAASMGAVLLAAGTEGKRYALPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQP GG+ GQASDI+ HA++I+++++ LN I   + G++ + ++K  +RD+ MSA E+
Sbjct: 121 LIHQPMGGYQGQASDIDIHAKEILRMRQDLNRILASHTGQSIKRIQKDTERDYFMSAEES 180

Query: 196 CDWGVVDKVLMSRIDIEEKS 215
             +G++DKVL  R    E+S
Sbjct: 181 KTYGIIDKVLYERTKTSEES 200


>gi|295112117|emb|CBL28867.1| ATP-dependent Clp protease proteolytic subunit ClpP [Synergistetes
           bacterium SGP1]
          Length = 195

 Score =  282 bits (722), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 114/190 (60%), Positives = 151/190 (79%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+EQT RGERSYDIYSRLLK+RIVF+  Q+ D +A  I AQLLFLE+E+P K+I LY
Sbjct: 6   IPYVIEQTGRGERSYDIYSRLLKDRIVFLGTQVMDDVANSIVAQLLFLESEDPDKDIHLY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAGMAIYDTMQ+IK P+ST C+G AASM ++LLS G +G R ALPNA +++H
Sbjct: 66  INSPGGSVTAGMAIYDTMQYIKSPVSTICVGMAASMAAILLSGGARGKRLALPNAEVMIH 125

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG SGQASDIE HA++I+  ++R+N I  ++ G+  E+V +  DRD+ M+A EA D+
Sbjct: 126 QPLGGTSGQASDIEIHARNILNTRKRMNAILARHTGQDVEKVAQDTDRDNFMTAQEALDY 185

Query: 199 GVVDKVLMSR 208
           G++D+++ SR
Sbjct: 186 GLIDRIIESR 195


>gi|149201013|ref|ZP_01877988.1| Protease subunit of ATP-dependent Clp protease [Roseovarius sp.
           TM1035]
 gi|149145346|gb|EDM33372.1| Protease subunit of ATP-dependent Clp protease [Roseovarius sp.
           TM1035]
          Length = 210

 Score =  282 bits (722), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 131/209 (62%), Positives = 176/209 (84%), Gaps = 1/209 (0%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           KD  D+++  LVPMVVEQT+RGER+YDI+SRLLKERI+F++G + D M++LI AQLL LE
Sbjct: 2   KDPMDIYMNTLVPMVVEQTSRGERAYDIFSRLLKERIIFLSGPVHDGMSSLIVAQLLHLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AENP KEIS+YINSPGGVVT+G++IYDTMQ+IKP +ST  +GQAASMGSLLL+AGE GMR
Sbjct: 62  AENPSKEISMYINSPGGVVTSGLSIYDTMQYIKPKVSTLVVGQAASMGSLLLTAGEPGMR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           F+LPN+R+++HQPSGG+ GQA+DI  HA++  K+K RLNEIYVK+ G+T ++VE+ L+RD
Sbjct: 122 FSLPNSRVMVHQPSGGYQGQATDIMIHARETQKLKDRLNEIYVKHTGQTLKKVEEALERD 181

Query: 188 HIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           + MS  EA  WG++D+++ +R   +E +K
Sbjct: 182 NFMSPEEAKAWGLIDEIVANRDKGDEAAK 210


>gi|242062408|ref|XP_002452493.1| hypothetical protein SORBIDRAFT_04g026880 [Sorghum bicolor]
 gi|241932324|gb|EES05469.1| hypothetical protein SORBIDRAFT_04g026880 [Sorghum bicolor]
          Length = 309

 Score =  282 bits (722), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 117/193 (60%), Positives = 156/193 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+E T+RGER+YDI+SRLLKERIV + G I D  A+L+ AQLLFLE+ENP K + 
Sbjct: 83  GLVPMVIETTSRGERAYDIFSRLLKERIVCIHGPIADDTASLVVAQLLFLESENPLKPVH 142

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGVVTAG+AIYDTMQ+I+ P++T C+GQAASMGSLLL+AG  G R ALPNAR++
Sbjct: 143 LYINSPGGVVTAGLAIYDTMQYIRCPVTTLCIGQAASMGSLLLAAGAPGERRALPNARVM 202

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  GQA+DI   A++I+K++ RLN+IY K+  +  +++E+ ++RD  M   EA 
Sbjct: 203 IHQPSGGAQGQATDIAIQAKEILKMRDRLNKIYQKHTRQPIDKIEQCMERDLFMDPEEAR 262

Query: 197 DWGVVDKVLMSRI 209
           DWG++D+V+ +R 
Sbjct: 263 DWGLIDEVIENRP 275


>gi|17982823|gb|AAL52055.1| ATP-dependent clp protease proteolytic subunit [Brucella melitensis
           bv. 1 str. 16M]
          Length = 247

 Score =  282 bits (722), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 147/216 (68%), Positives = 185/216 (85%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           + ++    +D  +  + LVPMVVEQTNRGER+YDI+SRLLKERI+FV G +ED M+ L+C
Sbjct: 32  LIYQRPIMRDPIETVMNLVPMVVEQTNRGERAYDIFSRLLKERIIFVNGPVEDGMSMLVC 91

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLEAENP+KEI++YINSPGGVVT+GMAIYDTMQFI+PP+ST CMGQAASMGSLLL+
Sbjct: 92  AQLLFLEAENPKKEINMYINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLT 151

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG  G R+AL NARI++HQPSGGF GQASDIERHAQDI+K+KRRLNEIYVK+ G+ Y+ +
Sbjct: 152 AGATGHRYALLNARIMVHQPSGGFQGQASDIERHAQDIIKMKRRLNEIYVKHTGRDYDTI 211

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           E+TLDRDH M+A EA ++G++DKV+ +R    ++SK
Sbjct: 212 ERTLDRDHFMTAQEALEFGLIDKVVEARDVSADESK 247


>gi|225028671|ref|ZP_03717863.1| hypothetical protein EUBHAL_02950 [Eubacterium hallii DSM 3353]
 gi|224953981|gb|EEG35190.1| hypothetical protein EUBHAL_02950 [Eubacterium hallii DSM 3353]
          Length = 194

 Score =  282 bits (721), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 111/193 (57%), Positives = 149/193 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+ GERSYDIYSRLLKERI+F+  ++ D  A+LI +QLLFLE+E+P+K+I
Sbjct: 1   MSLVPYVIEQTSHGERSYDIYSRLLKERIIFLGEEVNDTTASLIVSQLLFLESEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYI SPGG VTAGMAIYDTMQF+K  +ST CMG AASMG+ LL+ G KG R ALPN+ I
Sbjct: 61  SLYIMSPGGSVTAGMAIYDTMQFVKCDVSTICMGMAASMGAFLLAGGAKGKRLALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++IE  A+ I+  K +LN I  +N G+ YE++ +  +RD+ M+A +A
Sbjct: 121 MIHQPSGGAQGQATEIEIVAEHILHTKEKLNRILAENTGQPYEKIVQDTERDNYMTAEQA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D V+  R
Sbjct: 181 KAYGLIDAVVEKR 193


>gi|18203149|sp|Q9JZ38|CLPP_NEIMB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|316984112|gb|EFV63090.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
           meningitidis H44/76]
 gi|325140464|gb|EGC62985.1| endopeptidase Clp [Neisseria meningitidis CU385]
 gi|325200063|gb|ADY95518.1| endopeptidase Clp [Neisseria meningitidis H44/76]
 gi|325205915|gb|ADZ01368.1| endopeptidase Clp [Neisseria meningitidis M04-240196]
          Length = 204

 Score =  282 bits (721), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 121/196 (61%), Positives = 157/196 (80%), Gaps = 2/196 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ+ RGER++DIYSRLLKERIVF+ G + D  A L+ AQLLFLE+ENP K+I  
Sbjct: 7   LVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFF 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM+IYDTM FIKP +ST C+GQAASMG+ LLSAGEKG RFALPN+RI++
Sbjct: 67  YINSPGGSVTAGMSIYDTMNFIKPDVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMI 126

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASDIE HA++++KIK +LN +  K+C +   ++E+  DRD+ MSA EA
Sbjct: 127 HQPLISGGLGGQASDIEIHARELLKIKEKLNRLMAKHCDRDLADLERDTDRDNFMSAEEA 186

Query: 196 CDWGVVDKVLMSRIDI 211
            ++G++D++L +R  +
Sbjct: 187 KEYGLIDQILENRASL 202


>gi|297583414|ref|YP_003699194.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           selenitireducens MLS10]
 gi|297141871|gb|ADH98628.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           selenitireducens MLS10]
          Length = 197

 Score =  282 bits (721), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 113/197 (57%), Positives = 155/197 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQTNRGER+YDIYSRLLK+RI+ +   I+D++A  I AQLLFL A++P K+I
Sbjct: 1   MNLVPTVIEQTNRGERAYDIYSRLLKDRIIMLGTPIDDNVANSIVAQLLFLAADDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG +TAGMAIYDTMQFIKP + T C+G AASMG+ LL+AGE G R+ALPN+ +
Sbjct: 61  SLYINSPGGSITAGMAIYDTMQFIKPKVQTICIGMAASMGAFLLTAGEPGKRYALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDIE HA+ IV++K +LN+I  +  G+  E++ K  DRD+ +SA++A
Sbjct: 121 MIHQPLGGAQGQASDIEIHAKRIVEMKEKLNQILAERTGQDIEQIRKDTDRDNFLSAAQA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G++D+V+    D +
Sbjct: 181 KEYGLIDEVMDKTPDTK 197


>gi|288818082|ref|YP_003432430.1| ATP-dependent Clp protease proteolytic subunit [Hydrogenobacter
           thermophilus TK-6]
 gi|288787482|dbj|BAI69229.1| ATP-dependent Clp protease proteolytic subunit [Hydrogenobacter
           thermophilus TK-6]
 gi|308751684|gb|ADO45167.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Hydrogenobacter thermophilus TK-6]
          Length = 199

 Score =  282 bits (721), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 115/191 (60%), Positives = 157/191 (82%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+V+EQT RGER+YDIYSRLL++RIV +   I+DH+A LI AQLLFLEA++P+K+I +
Sbjct: 8   LVPIVIEQTPRGERAYDIYSRLLQDRIVLLGYPIDDHVANLIVAQLLFLEAQDPEKDIYM 67

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGMAIYDTMQ+IKP + T C+GQAASMG++LL+AG  G R+ALP++RI++
Sbjct: 68  YINSPGGSVTAGMAIYDTMQYIKPDVVTICIGQAASMGAVLLAAGAPGKRYALPHSRIMI 127

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG +GQA+DI  HA++I +IK  LNEI  K+ G+  E +E+ ++RD+ MS+ EA +
Sbjct: 128 HQPLGGITGQATDIIIHAEEIKRIKHMLNEILSKHTGQPLERIERDVERDYFMSSEEARE 187

Query: 198 WGVVDKVLMSR 208
           +G+VD+V+  R
Sbjct: 188 YGIVDRVIAKR 198


>gi|225075320|ref|ZP_03718519.1| hypothetical protein NEIFLAOT_00323 [Neisseria flavescens
           NRL30031/H210]
 gi|224953495|gb|EEG34704.1| hypothetical protein NEIFLAOT_00323 [Neisseria flavescens
           NRL30031/H210]
          Length = 206

 Score =  282 bits (721), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 122/197 (61%), Positives = 159/197 (80%), Gaps = 2/197 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ+ RGER++DIYSRLLKERIVF+ G + D  A L+ AQLLFLE+ENP K+I  
Sbjct: 9   LVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFF 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM+IYDTM FIKP +ST C+GQAASMG+ LLSAGEKG RFALPN+RI++
Sbjct: 69  YINSPGGSVTAGMSIYDTMNFIKPHVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMI 128

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG +GQASDIE HA++++KIK +LN +  K+C +   ++E+  DRD+ MSA EA
Sbjct: 129 HQPLISGGLAGQASDIEIHAKELLKIKEKLNRLLAKHCDRDLADLERDTDRDNYMSADEA 188

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G++D+VL +R  ++
Sbjct: 189 KEYGLIDQVLENRASLQ 205


>gi|307150040|ref|YP_003885424.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
           sp. PCC 7822]
 gi|306980268|gb|ADN12149.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
           sp. PCC 7822]
          Length = 203

 Score =  282 bits (721), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 99/192 (51%), Positives = 143/192 (74%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+E + RGER++DIYSRLL++RIVF+  ++ + +A LI AQLLFLE+E+P K+I L
Sbjct: 1   MIPTVIETSGRGERAFDIYSRLLRDRIVFLGQEVTNDLANLIVAQLLFLESEDPDKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG+ I+DTM  I+P + T C+G AASMG+ LL+AG KG R +LPN+RI++
Sbjct: 61  YINSPGGSVSAGLGIFDTMNQIRPDVCTICIGLAASMGAFLLNAGAKGKRMSLPNSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+ +K  LN+      G+  E++ +  +RD  MSA EA D
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYLKGLLNQHLASRTGQPLEKIAEDTERDFFMSAEEAKD 180

Query: 198 WGVVDKVLMSRI 209
           +G++D+V+  R 
Sbjct: 181 YGLIDQVINRRP 192


>gi|116256435|sp|Q3ANI8|CLPP1_SYNSC RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
          Length = 207

 Score =  282 bits (721), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 102/194 (52%), Positives = 146/194 (75%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G +P VVEQ+ RG+R++DIYSRLL+ERI+F+   ++D +A  + AQ+LFLEAE+P+K+I 
Sbjct: 7   GPLPTVVEQSGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDIQ 66

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VTAG+AIYDTMQ + P + T C G AASMG+ LLS G KG R ALPNARI+
Sbjct: 67  IYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIM 126

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA DIE  A++I+ +K  LN +  ++ G+  +++ +  DRD+ +S +EA 
Sbjct: 127 IHQPLGGAQGQAVDIEIQAKEILYLKETLNGLMAEHTGQPLDKISEDTDRDYFLSPAEAV 186

Query: 197 DWGVVDKVLMSRID 210
           ++G++D+V+ S  D
Sbjct: 187 EYGLIDRVVDSSGD 200


>gi|254994793|ref|ZP_05276983.1| ATP-dependent Clp protease proteolytic subunit [Anaplasma marginale
           str. Mississippi]
          Length = 207

 Score =  282 bits (721), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 138/197 (70%), Positives = 176/197 (89%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E   + LVPMVVEQT+RGER+YDIYSRLLKERI+F+TG +ED+MA+LI AQL+FLEAENP
Sbjct: 6   EREIMNLVPMVVEQTSRGERAYDIYSRLLKERIIFITGTVEDNMASLIVAQLVFLEAENP 65

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+ISLYINSPGGVVTAG++IYDTMQ+IKP +ST C+GQAASMG+LLL+ GE GMR+ALP
Sbjct: 66  EKDISLYINSPGGVVTAGLSIYDTMQYIKPKVSTLCLGQAASMGALLLAGGEPGMRYALP 125

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+RI++HQPSGGF GQA+DIE HA++I++IKRRLNEIYVK+ GK+ EE+E +++RD+ M 
Sbjct: 126 NSRIMVHQPSGGFRGQATDIEIHAREILEIKRRLNEIYVKHTGKSLEEIESSMERDNFMV 185

Query: 192 ASEACDWGVVDKVLMSR 208
           A +A D+G+VDKV+  R
Sbjct: 186 AEKAKDFGIVDKVIDKR 202


>gi|167627759|ref|YP_001678259.1| ATP-dependent Clp protease proteolytic subunit [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|241668323|ref|ZP_04755901.1| endopeptidase Clp [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254876856|ref|ZP_05249566.1| ATP-dependent Clp protease subunit P [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|189082458|sp|B0TZA5|CLPP_FRAP2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|167597760|gb|ABZ87758.1| Endopeptidase Clp [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
 gi|254842877|gb|EET21291.1| ATP-dependent Clp protease subunit P [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 201

 Score =  282 bits (721), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 114/195 (58%), Positives = 154/195 (78%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVP V+E+T  GER++DIYSRLLKERIVF+ G++ DH A L+ AQLLFLE+E+P K+I 
Sbjct: 5   NLVPTVIEKTAGGERAFDIYSRLLKERIVFLNGEVNDHSANLVIAQLLFLESEDPDKDIY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            YINSPGG+VTAGM +YDTMQFIKP ++T C+G AASMGSLLL+ G KG R++LP+++I+
Sbjct: 65  FYINSPGGMVTAGMGVYDTMQFIKPDVNTICIGLAASMGSLLLAGGAKGKRYSLPSSQIM 124

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I++IK RLN++   + G+  E + +  DRD+ M A EA 
Sbjct: 125 IHQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVRDTDRDNFMMADEAK 184

Query: 197 DWGVVDKVLMSRIDI 211
           ++G++D V+ SR  I
Sbjct: 185 EYGLIDHVIESREAI 199


>gi|226953943|ref|ZP_03824407.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter sp.
           ATCC 27244]
 gi|294651552|ref|ZP_06728861.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter
           haemolyticus ATCC 19194]
 gi|226835297|gb|EEH67680.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter sp.
           ATCC 27244]
 gi|292822575|gb|EFF81469.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 201

 Score =  282 bits (721), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 123/193 (63%), Positives = 160/193 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVP+VVEQ++RGERS+DI+SRLL+ER++F+TG++ED+MA LI AQ+LFLEAENP+K+I 
Sbjct: 9   ALVPVVVEQSSRGERSFDIFSRLLRERVIFLTGEVEDNMANLIVAQMLFLEAENPEKDIH 68

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGMAIYDTMQFIKP + T+CMGQAASMG+ LL+AG KG R+ L NAR++
Sbjct: 69  LYINSPGGSVTAGMAIYDTMQFIKPDVVTYCMGQAASMGAFLLNAGAKGKRYCLENARVM 128

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+ IK RLN +  ++ G+ YE V +  DRD+ M+A  A 
Sbjct: 129 IHQPLGGFRGQASDIEIHAREILFIKERLNRLMAEHSGQDYETVARDTDRDNFMTAQAAK 188

Query: 197 DWGVVDKVLMSRI 209
           ++G+VD+VL  R 
Sbjct: 189 EYGLVDQVLSKRP 201


>gi|225378750|ref|ZP_03755971.1| hypothetical protein ROSEINA2194_04420 [Roseburia inulinivorans DSM
           16841]
 gi|225209409|gb|EEG91763.1| hypothetical protein ROSEINA2194_04420 [Roseburia inulinivorans DSM
           16841]
          Length = 202

 Score =  282 bits (721), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 114/201 (56%), Positives = 156/201 (77%)

Query: 8   KKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           K+  +   + LVP V+EQT+RGER+YDIYSRLLK+RI+F+  ++ +  A+L+ AQLLFLE
Sbjct: 2   KRKGQVRDMSLVPYVIEQTSRGERNYDIYSRLLKDRIIFLGEEVNETTASLVVAQLLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           +E+P K+I LYINSPGG+VTAG+AIYDTMQ+IK  +ST C+G AASMG+ LL+ G KG R
Sbjct: 62  SEDPGKDIHLYINSPGGMVTAGLAIYDTMQYIKCDVSTICIGMAASMGAFLLAGGAKGKR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
            ALPNA I++HQPSGG  GQA++I+  A++I+K K++LNEI   N GK Y+ +    +RD
Sbjct: 122 LALPNAEIMIHQPSGGAKGQATEIQIAAENILKTKKKLNEILAANTGKPYDVIAADTERD 181

Query: 188 HIMSASEACDWGVVDKVLMSR 208
           H MSA EA ++G++D V+ SR
Sbjct: 182 HYMSAQEAMEYGLIDNVITSR 202


>gi|208779709|ref|ZP_03247053.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Francisella
           novicida FTG]
 gi|208744164|gb|EDZ90464.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Francisella
           novicida FTG]
          Length = 201

 Score =  282 bits (721), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 116/195 (59%), Positives = 153/195 (78%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVP V+E+T  GER++DIYSRLLKERIVF+ G++ DH A L+ AQLLFLE+E+P K+I 
Sbjct: 5   NLVPTVIEKTAGGERAFDIYSRLLKERIVFLNGEVNDHSANLVIAQLLFLESEDPNKDIY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            YINSPGG+VTAGM +YDTMQFIKP +ST C+G AASMGSLLL+ G KG R++LP+++I+
Sbjct: 65  FYINSPGGMVTAGMGVYDTMQFIKPDVSTICIGLAASMGSLLLAGGAKGKRYSLPSSQIM 124

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I++IK RLN++   + G+  E + K  DRD+ M A EA 
Sbjct: 125 IHQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFMMADEAK 184

Query: 197 DWGVVDKVLMSRIDI 211
            +G++D V+ SR  I
Sbjct: 185 AYGLIDHVIESREAI 199


>gi|94264491|ref|ZP_01288278.1| Endopeptidase Clp [delta proteobacterium MLMS-1]
 gi|94266601|ref|ZP_01290283.1| Endopeptidase Clp [delta proteobacterium MLMS-1]
 gi|93452772|gb|EAT03310.1| Endopeptidase Clp [delta proteobacterium MLMS-1]
 gi|93455050|gb|EAT05277.1| Endopeptidase Clp [delta proteobacterium MLMS-1]
          Length = 200

 Score =  282 bits (721), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 110/200 (55%), Positives = 158/200 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT RGERSYDIYSRLLKERI+F+   + D +A ++ AQ+LFLEA++P K+I
Sbjct: 1   MSLIPFVIEQTPRGERSYDIYSRLLKERIIFLGTGVNDEVANVVIAQMLFLEADDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           + YINSPGG VTAG+AIYDTM+++K  I+T C+GQAASMG++LL+AG KG R+ALPNARI
Sbjct: 61  TFYINSPGGSVTAGLAIYDTMRYVKCDIATLCLGQAASMGAVLLAAGTKGKRYALPNARI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQP GGF GQASDI+ HA++I+++++ LN++   + G+  ++++   +RD+ MS+ EA
Sbjct: 121 LIHQPMGGFQGQASDIDIHAREILRMRQGLNKMLADHTGQKLKKIQTDTERDYFMSSEEA 180

Query: 196 CDWGVVDKVLMSRIDIEEKS 215
             +G++DKVL+ R    E  
Sbjct: 181 KTYGLIDKVLLERTTASEDD 200


>gi|229014309|ref|ZP_04171428.1| ATP-dependent Clp protease proteolytic subunit [Bacillus mycoides
           DSM 2048]
 gi|229099577|ref|ZP_04230505.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock3-29]
 gi|229105752|ref|ZP_04236381.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock3-28]
 gi|229118641|ref|ZP_04247993.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock1-3]
 gi|228664833|gb|EEL20323.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock1-3]
 gi|228677641|gb|EEL31889.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock3-28]
 gi|228683873|gb|EEL37823.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock3-29]
 gi|228746909|gb|EEL96793.1| ATP-dependent Clp protease proteolytic subunit [Bacillus mycoides
           DSM 2048]
          Length = 193

 Score =  282 bits (721), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 106/193 (54%), Positives = 152/193 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFLE+++P+K+I
Sbjct: 1   MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG +TAGMAIYDTMQFIKP +ST C+G AASMG+ LL+AGEKG RFALPN+ +
Sbjct: 61  HIYINSPGGSITAGMAIYDTMQFIKPQVSTICIGMAASMGAFLLAAGEKGKRFALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN+I     G+  E +++  DRD+ M+A  A
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILFLREKLNQILADRTGQPLEVLQRDTDRDNFMTAERA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++DK+  +R
Sbjct: 181 LEYGLIDKIFTNR 193


>gi|169634426|ref|YP_001708162.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter
           baumannii SDF]
 gi|169797267|ref|YP_001715060.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter
           baumannii AYE]
 gi|184156807|ref|YP_001845146.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter
           baumannii ACICU]
 gi|213155939|ref|YP_002317984.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter
           baumannii AB0057]
 gi|215484708|ref|YP_002326943.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter
           baumannii AB307-0294]
 gi|239500790|ref|ZP_04660100.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter
           baumannii AB900]
 gi|260549098|ref|ZP_05823319.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter sp.
           RUH2624]
 gi|260556149|ref|ZP_05828368.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter
           baumannii ATCC 19606]
 gi|294836355|ref|ZP_06781038.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter sp.
           6013113]
 gi|294841889|ref|ZP_06786572.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter sp.
           6014059]
 gi|294857705|ref|ZP_06795474.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter sp.
           6013150]
 gi|301346762|ref|ZP_07227503.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter
           baumannii AB056]
 gi|301512252|ref|ZP_07237489.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter
           baumannii AB058]
 gi|301594241|ref|ZP_07239249.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter
           baumannii AB059]
 gi|169150194|emb|CAM88088.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           (Caseinolytic protease) (Protease Ti) (Heat shock
           protein F21.5) [Acinetobacter baumannii AYE]
 gi|169153218|emb|CAP02314.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           (Caseinolytic protease) (Protease Ti) (Heat shock
           protein F21.5) [Acinetobacter baumannii]
 gi|183208401|gb|ACC55799.1| Protease subunit of ATP-dependent Clp protease [Acinetobacter
           baumannii ACICU]
 gi|193076289|gb|ABO10931.2| ATP-dependent Clp protease proteolytic subunit [Acinetobacter
           baumannii ATCC 17978]
 gi|213055099|gb|ACJ40001.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter
           baumannii AB0057]
 gi|213988734|gb|ACJ59033.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter
           baumannii AB307-0294]
 gi|260407826|gb|EEX01298.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter sp.
           RUH2624]
 gi|260410204|gb|EEX03503.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter
           baumannii ATCC 19606]
 gi|322506699|gb|ADX02153.1| clpP [Acinetobacter baumannii 1656-2]
 gi|323516573|gb|ADX90954.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter
           baumannii TCDC-AB0715]
          Length = 201

 Score =  282 bits (721), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 122/193 (63%), Positives = 159/193 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVP+VVEQ++RGERS+DIYSRLL+ER++F+TG++ED+MA LI AQ+LFLEAENP K+I 
Sbjct: 9   ALVPVVVEQSSRGERSFDIYSRLLRERVIFLTGEVEDNMANLIVAQMLFLEAENPDKDIH 68

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGMAIYDTMQFIKP + T+CMGQAASMG+ LL+AG KG R+ L NAR++
Sbjct: 69  LYINSPGGSVTAGMAIYDTMQFIKPDVVTYCMGQAASMGAFLLNAGAKGKRYCLENARVM 128

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+ IK RLN +  ++ G+ Y+ + +  DRD+ M+A  A 
Sbjct: 129 IHQPLGGFRGQASDIEIHAREILFIKERLNRLMAEHSGQDYDTIARDTDRDNFMTAQAAK 188

Query: 197 DWGVVDKVLMSRI 209
           ++G+VD+VL  R 
Sbjct: 189 EYGLVDQVLSKRP 201


>gi|163793182|ref|ZP_02187158.1| Protease subunit of ATP-dependent Clp protease [alpha
           proteobacterium BAL199]
 gi|159181828|gb|EDP66340.1| Protease subunit of ATP-dependent Clp protease [alpha
           proteobacterium BAL199]
          Length = 213

 Score =  281 bits (720), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 129/208 (62%), Positives = 173/208 (83%), Gaps = 1/208 (0%)

Query: 10  DSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +  D+++  LVPMVVEQTNRGER+YDIYSRLLKERI+FV G I D +A+++CAQLLFLEA
Sbjct: 3   NPVDIYMNSLVPMVVEQTNRGERAYDIYSRLLKERIIFVMGPINDAVASVVCAQLLFLEA 62

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP K+I++YINSPGG+VT+GMA+YDTM++++P IST CMG AASMGSLLL+AG  G R+
Sbjct: 63  ENPTKDIAMYINSPGGIVTSGMAMYDTMEYVRPEISTVCMGHAASMGSLLLTAGAPGKRY 122

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
            LPNA++++HQPSGGF GQASDIE HA++I+K + RLN+IYVK+ G++ +E+EK +DRD+
Sbjct: 123 CLPNAKVMIHQPSGGFQGQASDIEIHAREIIKTRERLNQIYVKHSGRSIDEIEKGMDRDN 182

Query: 189 IMSASEACDWGVVDKVLMSRIDIEEKSK 216
            M+A EA  +G++D+V+  R    E  K
Sbjct: 183 FMTADEAKAFGLIDEVIHKRPAPVETDK 210


>gi|154148860|ref|YP_001405639.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           hominis ATCC BAA-381]
 gi|166201810|sp|A7HZE8|CLPP_CAMHC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|153804869|gb|ABS51876.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           hominis ATCC BAA-381]
          Length = 195

 Score =  281 bits (720), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 117/190 (61%), Positives = 151/190 (79%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            VP V+E+T+RGERSYDIYSRLLK+RIV ++G+I D +A+ + AQLLFLEAE+P K+I L
Sbjct: 2   FVPYVIERTSRGERSYDIYSRLLKDRIVMLSGEINDEVASSVVAQLLFLEAEDPDKDIYL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G +IYDTM +IKP +ST C+GQAASMG+ LLS GEKG R+ALPNARI++
Sbjct: 62  YINSPGGVVTSGFSIYDTMNYIKPAVSTICIGQAASMGAFLLSCGEKGKRYALPNARIMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE   ++I++IK  LN+I  +N G+   ++EK  DRD  MSA EA  
Sbjct: 122 HQPLGGAQGQATDIEITTKEILRIKATLNKILAENSGQKLSKIEKDTDRDFYMSAQEAVK 181

Query: 198 WGVVDKVLMS 207
           +G++DKVL  
Sbjct: 182 YGLIDKVLEK 191


>gi|210621780|ref|ZP_03292809.1| hypothetical protein CLOHIR_00754 [Clostridium hiranonis DSM 13275]
 gi|210154544|gb|EEA85550.1| hypothetical protein CLOHIR_00754 [Clostridium hiranonis DSM 13275]
          Length = 195

 Score =  281 bits (720), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 110/194 (56%), Positives = 150/194 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP VVEQT RGERSYDI+SRLLK+RI+F+  ++ D  A LI AQLLFLEAE+P K+I
Sbjct: 1   MALVPYVVEQTGRGERSYDIFSRLLKDRIIFLCDEVNDDTAGLIVAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +TAGMAIYDTM +IKP +ST C+G AASMG+ LLS+G KG R+ALPN+ I
Sbjct: 61  HLYINSPGGSITAGMAIYDTMNYIKPDVSTICIGMAASMGAFLLSSGAKGKRYALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+++K +LN+I  +N G+  E++    +RD+ M A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIRAKRIIRMKEKLNQILSENTGQPLEKIMADTERDNFMEADEA 180

Query: 196 CDWGVVDKVLMSRI 209
             +G++D+V+ ++ 
Sbjct: 181 LAYGLIDEVITNKP 194


>gi|295695312|ref|YP_003588550.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           tusciae DSM 2912]
 gi|295410914|gb|ADG05406.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           tusciae DSM 2912]
          Length = 196

 Score =  281 bits (720), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 110/191 (57%), Positives = 150/191 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMV+EQ++RGER+YDIYSRLLK+RI+F+   I+D +A L+ AQLLFL AE+ +K+I
Sbjct: 1   MSLVPMVIEQSSRGERAYDIYSRLLKDRIIFLGTGIDDIVANLVVAQLLFLAAEDDKKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +TAGMAIYDTMQ+IKP +ST C+G AASMG+ LL+AG KG RFALPN+ I
Sbjct: 61  RLYINSPGGSITAGMAIYDTMQYIKPDVSTVCIGMAASMGAFLLAAGTKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+ HA  I++ K ++N I  +  G+  E++E+  DRD+ M A EA
Sbjct: 121 MIHQPLGGVRGQAADIKIHADWILRTKDKINRILSERTGQPLEKIERDTDRDNFMDAEEA 180

Query: 196 CDWGVVDKVLM 206
             +G++D+V+ 
Sbjct: 181 KAYGLIDEVIS 191


>gi|239828281|ref|YP_002950905.1| ATP-dependent Clp protease proteolytic subunit [Geobacillus sp.
           WCH70]
 gi|259585956|sp|C5D7M9|CLPP_GEOSW RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|239808574|gb|ACS25639.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus
           sp. WCH70]
          Length = 196

 Score =  281 bits (720), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 112/197 (56%), Positives = 155/197 (78%), Gaps = 1/197 (0%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT+RGER+YDIYSRLLK+RI+ +   I+D +A  I +QLLFL AE+P+K+I
Sbjct: 1   MNLIPTVIEQTSRGERAYDIYSRLLKDRIIILGSPIDDQVANSIVSQLLFLAAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG +TAG+AIYDTMQFIKP +ST C+G AASMG+ LL+AG KG RFALPN+ I
Sbjct: 61  SLYINSPGGSITAGLAIYDTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN I  +N G+  E +E+  DRD+ M+A +A
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILFLRDKLNRILAENTGQPVEVIERDTDRDNFMTAQKA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G++D+VL  RID +
Sbjct: 181 QEYGIIDRVLT-RIDEK 196


>gi|170718338|ref|YP_001783566.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus somnus
           2336]
 gi|189082460|sp|B0UW20|CLPP_HAES2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|168826467|gb|ACA31838.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Haemophilus
           somnus 2336]
          Length = 193

 Score =  281 bits (720), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 123/193 (63%), Positives = 159/193 (82%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++PMVVEQT+RGERSYDIYSRLLKER++F+TG++ED MA LI AQLLFLEAE+P K+I
Sbjct: 1   MSVIPMVVEQTSRGERSYDIYSRLLKERVIFLTGEVEDRMANLIVAQLLFLEAEDPAKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           ++YINSPGG VTAGMAIYDTMQFIKP + T C+GQA SMG+ LL+ G  G R ALP+AR+
Sbjct: 61  NIYINSPGGSVTAGMAIYDTMQFIKPNVRTLCIGQACSMGAFLLAGGTAGKRAALPHARV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQASDI+ HAQ+I+KIK+ LNE    + G++ E++E+  DRD+ MSA +A
Sbjct: 121 MIHQPLGGFRGQASDIQIHAQEILKIKQTLNERLAFHTGQSIEQIEQDTDRDNFMSAEQA 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD VL+ R
Sbjct: 181 KLYGLVDDVLIKR 193


>gi|255002920|ref|ZP_05277884.1| ATP-dependent Clp protease proteolytic subunit [Anaplasma marginale
           str. Puerto Rico]
 gi|255004048|ref|ZP_05278849.1| ATP-dependent Clp protease proteolytic subunit [Anaplasma marginale
           str. Virginia]
          Length = 198

 Score =  281 bits (720), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 137/193 (70%), Positives = 175/193 (90%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT+RGER+YDIYSRLLKERI+F+TG +ED+MA+LI AQL+FLEAENP+K+I
Sbjct: 1   MNLVPMVVEQTSRGERAYDIYSRLLKERIIFITGTVEDNMASLIVAQLVFLEAENPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGGVVTAG++IYDTMQ+IKP +ST C+GQAASMG+LLL+ GE GMR+ALPN+RI
Sbjct: 61  SLYINSPGGVVTAGLSIYDTMQYIKPKVSTLCLGQAASMGALLLAGGEPGMRYALPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGGF GQA+DIE HA++I++IKRRLNEIYVK+ GK+ EE+E +++RD+ M A +A
Sbjct: 121 MVHQPSGGFRGQATDIEIHAREILEIKRRLNEIYVKHTGKSLEEIESSMERDNFMVAEKA 180

Query: 196 CDWGVVDKVLMSR 208
            D+G+VDKV+  R
Sbjct: 181 KDFGIVDKVIDKR 193


>gi|330814219|ref|YP_004358458.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Pelagibacter sp. IMCC9063]
 gi|327487314|gb|AEA81719.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Pelagibacter sp. IMCC9063]
          Length = 204

 Score =  281 bits (720), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 123/202 (60%), Positives = 164/202 (81%), Gaps = 1/202 (0%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           KD  D+++  LVPMVVEQT RGER+YDIYSRLLKERI+F+ G I   +++LI AQLLFLE
Sbjct: 2   KDPIDIYMNTLVPMVVEQTPRGERAYDIYSRLLKERIIFLVGPINSQVSSLISAQLLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           +EN  KEI +YINSPGG+VT G+AIYDTMQ+IKP ++T C+GQA SMGS LL+AGEKG R
Sbjct: 62  SENNSKEIFMYINSPGGIVTDGLAIYDTMQYIKPAVATLCIGQACSMGSFLLAAGEKGQR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
            +LPN+R+++HQPS GF GQA+DIE HA +I++ K++LNEIY K+ G++ E++++ L+RD
Sbjct: 122 MSLPNSRVMVHQPSAGFQGQATDIEIHANEIMQTKKKLNEIYSKHTGQSVEKIKEALERD 181

Query: 188 HIMSASEACDWGVVDKVLMSRI 209
             MSA EA  +G++DKV+  R 
Sbjct: 182 KFMSAEEAKAFGLIDKVVEKRP 203


>gi|23501987|ref|NP_698114.1| ATP-dependent Clp protease proteolytic subunit [Brucella suis 1330]
 gi|38257636|sp|Q8G0I4|CLPP_BRUSU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|23347937|gb|AAN30029.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brucella suis
           1330]
          Length = 209

 Score =  281 bits (720), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 148/208 (71%), Positives = 182/208 (87%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  +  + LVPMVVEQTNRGER+YDI+SRLLKERI+FV G +ED M+ L+CAQLLFLEA
Sbjct: 2   RDPIETVMNLVPMVVEQTNRGERAYDIFSRLLKERIIFVNGPVEDGMSMLVCAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI++YINSPGGVVT+GMAIYDTMQFI+PP+ST CMGQAASMGSLLL+AG  G R+
Sbjct: 62  ENPKKEINMYINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGATGHRY 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           ALPNARI++HQPSGGF GQASDIERHAQDI+K+KRRLNEIYVK+ G+ Y+ +E+TLDRDH
Sbjct: 122 ALPNARIMVHQPSGGFQGQASDIERHAQDIIKMKRRLNEIYVKHTGRDYDTIERTLDRDH 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIEEKSK 216
            M+A EA ++G++DKV+  R    ++SK
Sbjct: 182 FMTAQEALEFGLIDKVVEVRDVSADESK 209


>gi|83592885|ref|YP_426637.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rhodospirillum
           rubrum ATCC 11170]
 gi|124013826|sp|Q2RU45|CLPP_RHORT RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|83575799|gb|ABC22350.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rhodospirillum
           rubrum ATCC 11170]
          Length = 216

 Score =  281 bits (720), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 134/205 (65%), Positives = 167/205 (81%), Gaps = 1/205 (0%)

Query: 6   CAKKDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLL 64
              +D  DVF   LVPMVVEQTNRGERSYDIYSRLLKERI+F+TGQ+ D +A+LICAQLL
Sbjct: 1   MIDRDPIDVFNNTLVPMVVEQTNRGERSYDIYSRLLKERIIFLTGQVHDGVASLICAQLL 60

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           FLE+ENP K+IS YINSPGGVVT+GMAIYDTMQ+I+ P+ST C+GQAASMGSLLL AGE 
Sbjct: 61  FLESENPSKDISFYINSPGGVVTSGMAIYDTMQYIRSPVSTVCIGQAASMGSLLLCAGEA 120

Query: 125 GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
           G R+A PNARI++HQPSGGF GQA+DIE  A++I+ ++ RLN IYVK+ G+  E +E+ +
Sbjct: 121 GKRYATPNARIMIHQPSGGFQGQAADIEIQAREILALRERLNRIYVKHTGQPLETIERAM 180

Query: 185 DRDHIMSASEACDWGVVDKVLMSRI 209
           DRD+ M+A E+  +G+ D V+  R 
Sbjct: 181 DRDNYMTAEESRAFGLTDSVIERRA 205


>gi|30023185|ref|NP_834816.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           ATCC 14579]
 gi|47567358|ref|ZP_00238071.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus G9241]
 gi|49481130|ref|YP_039138.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|52140414|ref|YP_086415.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           E33L]
 gi|75759660|ref|ZP_00739744.1| ATP-dependent endopeptidase clp proteolytic subunit clpP [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|118480187|ref|YP_897338.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis str. Al Hakam]
 gi|190015186|ref|YP_001966706.1| ATP-dependent Clp protease, proteolytic subunit [Bacillus cereus]
 gi|190015451|ref|YP_001967031.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus]
 gi|190015619|ref|YP_001967344.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus]
 gi|196032944|ref|ZP_03100357.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus W]
 gi|196039610|ref|ZP_03106915.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus NVH0597-99]
 gi|196045601|ref|ZP_03112831.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus 03BB108]
 gi|206970378|ref|ZP_03231331.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus AH1134]
 gi|208702014|ref|YP_002267309.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus H3081.97]
 gi|217956873|ref|YP_002335967.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           AH187]
 gi|217962631|ref|YP_002341203.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           AH187]
 gi|218231097|ref|YP_002369926.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           B4264]
 gi|218848317|ref|YP_002455085.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus AH820]
 gi|218900271|ref|YP_002448682.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus G9842]
 gi|218906323|ref|YP_002454157.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus AH820]
 gi|222098603|ref|YP_002532661.1| ATP-dependent clp protease proteolytic subunit [Bacillus cereus Q1]
 gi|225867113|ref|YP_002752491.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus 03BB102]
 gi|228903623|ref|ZP_04067744.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis IBL 4222]
 gi|228910978|ref|ZP_04074786.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis IBL 200]
 gi|228917753|ref|ZP_04081294.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228923875|ref|ZP_04087152.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228930150|ref|ZP_04093159.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228936434|ref|ZP_04099232.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228942286|ref|ZP_04104825.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228948867|ref|ZP_04111142.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228955388|ref|ZP_04117393.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228961377|ref|ZP_04122991.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228968242|ref|ZP_04129240.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228975215|ref|ZP_04135773.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228981853|ref|ZP_04142148.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis Bt407]
 gi|228988373|ref|ZP_04148465.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|229072597|ref|ZP_04205799.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           F65185]
 gi|229082356|ref|ZP_04214819.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock4-2]
 gi|229087619|ref|ZP_04219749.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock3-44]
 gi|229094242|ref|ZP_04225321.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock3-42]
 gi|229112558|ref|ZP_04242095.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock1-15]
 gi|229124654|ref|ZP_04253836.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           95/8201]
 gi|229130395|ref|ZP_04259353.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           BDRD-Cer4]
 gi|229147676|ref|ZP_04276019.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           BDRD-ST24]
 gi|229153305|ref|ZP_04281483.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           m1550]
 gi|229158714|ref|ZP_04286772.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           ATCC 4342]
 gi|229164770|ref|ZP_04292604.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           R309803]
 gi|229181405|ref|ZP_04308733.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           172560W]
 gi|229187359|ref|ZP_04314502.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           BGSC 6E1]
 gi|229193390|ref|ZP_04320339.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           ATCC 10876]
 gi|254724422|ref|ZP_05186206.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
           str. A1055]
 gi|296505568|ref|YP_003667268.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis BMB171]
 gi|301056609|ref|YP_003794820.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
           CI]
 gi|67460463|sp|Q631K2|CLPP2_BACCZ RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|67460476|sp|Q6HBD8|CLPP2_BACHK RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|67460524|sp|Q815J6|CLPP2_BACCR RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|17981472|gb|AAL51030.1|AF454757_1 ClpP1 [Bacillus thuringiensis]
 gi|29898745|gb|AAP12017.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           ATCC 14579]
 gi|47555979|gb|EAL14317.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus G9241]
 gi|49332686|gb|AAT63332.1| ATP-dependent Clp protease, proteolytic subunit (endopeptidase Clp)
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|51973883|gb|AAU15433.1| ATP-dependent Clp protease, proteolytic subunit (endopeptidase Clp)
           [Bacillus cereus E33L]
 gi|74492856|gb|EAO55988.1| ATP-dependent endopeptidase clp proteolytic subunit clpP [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|116584526|gb|ABK00643.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus]
 gi|116584862|gb|ABK00977.1| ATP-dependent Clp protease, proteolytic subunit [Bacillus cereus]
 gi|116585132|gb|ABK01241.1| ATP-dependent Clp protease, proteolytic subunit [Bacillus cereus]
 gi|118419412|gb|ABK87831.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bacillus
           thuringiensis str. Al Hakam]
 gi|195994373|gb|EDX58328.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus W]
 gi|196023432|gb|EDX62109.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus 03BB108]
 gi|196029770|gb|EDX68372.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus NVH0597-99]
 gi|206734955|gb|EDZ52124.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus AH1134]
 gi|208657869|gb|ACI30239.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus H3081.97]
 gi|217064081|gb|ACJ78331.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus AH187]
 gi|217068436|gb|ACJ82684.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus AH187]
 gi|218159054|gb|ACK59046.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus B4264]
 gi|218536274|gb|ACK88672.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus AH820]
 gi|218540368|gb|ACK92764.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus AH820]
 gi|218541218|gb|ACK93612.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus G9842]
 gi|221242662|gb|ACM15372.1| ATP-dependent Clp protease, proteolytic subunit (endopeptidase Clp)
           [Bacillus cereus Q1]
 gi|225789761|gb|ACO29978.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus 03BB102]
 gi|228590104|gb|EEK47974.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           ATCC 10876]
 gi|228596063|gb|EEK53740.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           BGSC 6E1]
 gi|228601980|gb|EEK59473.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           172560W]
 gi|228618700|gb|EEK75692.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           R309803]
 gi|228624698|gb|EEK81467.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           ATCC 4342]
 gi|228629909|gb|EEK86560.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           m1550]
 gi|228635689|gb|EEK92176.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           BDRD-ST24]
 gi|228653094|gb|EEL08974.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           BDRD-Cer4]
 gi|228658805|gb|EEL14463.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           95/8201]
 gi|228670938|gb|EEL26245.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock1-15]
 gi|228689234|gb|EEL43056.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock3-42]
 gi|228695735|gb|EEL48590.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock3-44]
 gi|228700788|gb|EEL53311.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock4-2]
 gi|228710573|gb|EEL62546.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           F65185]
 gi|228771354|gb|EEM19828.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228777965|gb|EEM26237.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis Bt407]
 gi|228784494|gb|EEM32515.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228791415|gb|EEM39019.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228798262|gb|EEM45261.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228804180|gb|EEM50794.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228810829|gb|EEM57175.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228817330|gb|EEM63416.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228823266|gb|EEM69100.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228829435|gb|EEM75063.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228835674|gb|EEM81038.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228841990|gb|EEM87096.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228848633|gb|EEM93479.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis IBL 200]
 gi|228856052|gb|EEN00591.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis IBL 4222]
 gi|296326620|gb|ADH09548.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis BMB171]
 gi|300378778|gb|ADK07682.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           biovar anthracis str. CI]
 gi|324329059|gb|ADY24319.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar finitimus YBT-020]
 gi|326942942|gb|AEA18838.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 193

 Score =  281 bits (720), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 105/193 (54%), Positives = 153/193 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFLE+++P+K+I
Sbjct: 1   MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG +TAGMAIYDTMQFIKP +ST C+G AASMG+ LL+AGEKG R+ALPN+ +
Sbjct: 61  HIYINSPGGSITAGMAIYDTMQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN+I     G+  E +++  DRD+ M+A +A
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILFLREKLNQILADRTGQPLEVLQRDTDRDNFMTAEKA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++DK+  +R
Sbjct: 181 LEYGLIDKIFTNR 193


>gi|60416366|sp|Q8RC25|CLPP_THETN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
          Length = 195

 Score =  281 bits (720), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 107/192 (55%), Positives = 152/192 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQTNRGER+YDI+SRLLK+RIVF+  +I D  A+L+ AQ+LFLEAE+P K+I
Sbjct: 1   MSLVPIVVEQTNRGERAYDIFSRLLKDRIVFLGDEINDTTASLVIAQMLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +TAG+AIYDTMQ+IKP + T C+G AASM + LL+AG KG RFALPN+ I
Sbjct: 61  WLYINSPGGSITAGLAIYDTMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+ HA+ +++++ +L  I  +N G+  E+++  ++RD+ M+A EA
Sbjct: 121 MIHQPWGGMQGQATDIKIHAERLLRLRDKLERILSENTGQPLEKIKADMERDYFMTAEEA 180

Query: 196 CDWGVVDKVLMS 207
             +G++D +L+ 
Sbjct: 181 KTYGIIDDILVR 192


>gi|56707749|ref|YP_169645.1| ATP-dependent Clp protease proteolytic subunit [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|89256249|ref|YP_513611.1| ATP-dependent Clp protease proteolytic subunit [Francisella
           tularensis subsp. holarctica LVS]
 gi|110670220|ref|YP_666777.1| ATP-dependent Clp protease subunit P [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115314706|ref|YP_763429.1| ATP-dependent Clp protease subunit P [Francisella tularensis subsp.
           holarctica OSU18]
 gi|118497648|ref|YP_898698.1| ATP-dependent Clp protease subunit P [Francisella tularensis subsp.
           novicida U112]
 gi|134302069|ref|YP_001122038.1| ATP-dependent Clp protease subunit P [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|156502310|ref|YP_001428375.1| ATP-dependent Clp protease proteolytic subunit [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|167010854|ref|ZP_02275785.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Francisella
           tularensis subsp. holarctica FSC200]
 gi|187931471|ref|YP_001891455.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Francisella
           tularensis subsp. mediasiatica FSC147]
 gi|194323619|ref|ZP_03057395.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Francisella
           tularensis subsp. novicida FTE]
 gi|224456819|ref|ZP_03665292.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|254367562|ref|ZP_04983588.1| ATP-dependent Clp protease subunit P [Francisella tularensis subsp.
           holarctica 257]
 gi|254369239|ref|ZP_04985251.1| hypothetical protein FTAG_00191 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|254370252|ref|ZP_04986258.1| ATP-dependent Clp protease subunit P [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254373013|ref|ZP_04988502.1| ATP-dependent Clp protease subunit P [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|254374463|ref|ZP_04989944.1| hypothetical protein FTDG_00632 [Francisella novicida GA99-3548]
 gi|254874562|ref|ZP_05247272.1| ATP-dependent clp protease proteolytic subunit [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|290953590|ref|ZP_06558211.1| ATP-dependent Clp protease proteolytic subunit [Francisella
           tularensis subsp. holarctica URFT1]
 gi|295313091|ref|ZP_06803781.1| ATP-dependent Clp protease proteolytic subunit [Francisella
           tularensis subsp. holarctica URFT1]
 gi|67460184|sp|Q5NH47|CLPP_FRATT RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|116243138|sp|Q2A3U1|CLPP_FRATH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|122325271|sp|Q0BM92|CLPP_FRATO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|122971012|sp|Q14IJ9|CLPP_FRAT1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166201822|sp|A7NBR6|CLPP_FRATF RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166201823|sp|A0Q6S9|CLPP_FRATN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166201824|sp|A4IYB6|CLPP_FRATW RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706451|sp|B2SG18|CLPP_FRATM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|56604241|emb|CAG45257.1| ATP-dependent Clp protease subunit P [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89144080|emb|CAJ79331.1| ATP-dependent Clp protease subunit P [Francisella tularensis subsp.
           holarctica LVS]
 gi|110320553|emb|CAL08640.1| ATP-dependent Clp protease subunit P [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115129605|gb|ABI82792.1| endopeptidase Clp [Francisella tularensis subsp. holarctica OSU18]
 gi|118423554|gb|ABK89944.1| ATP-dependent Clp protease subunit P [Francisella novicida U112]
 gi|134049846|gb|ABO46917.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|134253378|gb|EBA52472.1| ATP-dependent Clp protease subunit P [Francisella tularensis subsp.
           holarctica 257]
 gi|151568496|gb|EDN34150.1| ATP-dependent Clp protease subunit P [Francisella tularensis subsp.
           tularensis FSC033]
 gi|151570740|gb|EDN36394.1| ATP-dependent Clp protease subunit P [Francisella novicida
           GA99-3549]
 gi|151572182|gb|EDN37836.1| hypothetical protein FTDG_00632 [Francisella novicida GA99-3548]
 gi|156252913|gb|ABU61419.1| ATP-dependent Clp protease, proteolytic subunit [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|157122189|gb|EDO66329.1| hypothetical protein FTAG_00191 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|187712380|gb|ACD30677.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Francisella
           tularensis subsp. mediasiatica FSC147]
 gi|194321983|gb|EDX19465.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Francisella
           tularensis subsp. novicida FTE]
 gi|254840561|gb|EET18997.1| ATP-dependent clp protease proteolytic subunit [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|282158920|gb|ADA78311.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Francisella
           tularensis subsp. tularensis NE061598]
          Length = 201

 Score =  281 bits (720), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 116/195 (59%), Positives = 153/195 (78%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVP V+E+T  GER++DIYSRLLKERIVF+ G++ DH A L+ AQLLFLE+E+P K+I 
Sbjct: 5   NLVPTVIEKTAGGERAFDIYSRLLKERIVFLNGEVNDHSANLVIAQLLFLESEDPDKDIY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            YINSPGG+VTAGM +YDTMQFIKP +ST C+G AASMGSLLL+ G KG R++LP+++I+
Sbjct: 65  FYINSPGGMVTAGMGVYDTMQFIKPDVSTICIGLAASMGSLLLAGGAKGKRYSLPSSQIM 124

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I++IK RLN++   + G+  E + K  DRD+ M A EA 
Sbjct: 125 IHQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFMMADEAK 184

Query: 197 DWGVVDKVLMSRIDI 211
            +G++D V+ SR  I
Sbjct: 185 AYGLIDHVIESREAI 199


>gi|166031009|ref|ZP_02233838.1| hypothetical protein DORFOR_00690 [Dorea formicigenerans ATCC
           27755]
 gi|166029276|gb|EDR48033.1| hypothetical protein DORFOR_00690 [Dorea formicigenerans ATCC
           27755]
          Length = 193

 Score =  281 bits (720), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 111/193 (57%), Positives = 147/193 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLLK+RI+F   ++ D  A++  AQLLFLEAE+P+K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLKDRIIFFGEEVTDASASVAIAQLLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG V+AG+AIYDTMQ+IK  I T C+G AASMGS LL+ G KG R ALPN+ I
Sbjct: 61  HLYINSPGGSVSAGLAIYDTMQYIKCDIETICIGMAASMGSFLLAGGTKGKRLALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I+  A+ I+K + RLN I  +N G+  E + +  DRD+ MSA EA
Sbjct: 121 MIHQPSGGAQGQATEIQIAAEHILKTRERLNRILAENTGQPLEVISRETDRDNFMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D+V+  R
Sbjct: 181 KAFGLIDEVITRR 193


>gi|304319808|ref|YP_003853451.1| Protease subunit of ATP-dependent Clp protease [Parvularcula
           bermudensis HTCC2503]
 gi|303298711|gb|ADM08310.1| Protease subunit of ATP-dependent Clp protease [Parvularcula
           bermudensis HTCC2503]
          Length = 210

 Score =  281 bits (720), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 132/202 (65%), Positives = 176/202 (87%), Gaps = 1/202 (0%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           +D  D+++  LVPMV+EQT+RGERS+DIYSRLLKERI+F++GQ+ D ++TLI AQLLFLE
Sbjct: 2   RDPHDIYMNTLVPMVIEQTSRGERSFDIYSRLLKERIIFLSGQVHDQVSTLIVAQLLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           A+NP+K+I+ YINSPGG VTAG+A+YDTM++I+P IST C+G AASMGSLLL+AG+KGMR
Sbjct: 62  ADNPKKDIAFYINSPGGSVTAGLAMYDTMRYIRPQISTMCVGLAASMGSLLLTAGDKGMR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           F+LPN+RI++HQPS GF GQASDIERHA+DI++ K+RLNEIYV++ G+ YE +E+TLDRD
Sbjct: 122 FSLPNSRIMVHQPSAGFQGQASDIERHARDIIQTKKRLNEIYVEHTGQDYETIERTLDRD 181

Query: 188 HIMSASEACDWGVVDKVLMSRI 209
             M+  +A D+G++D+VL  R 
Sbjct: 182 TFMTPEDALDFGLIDQVLEKRA 203


>gi|282899048|ref|ZP_06307029.1| Peptidase S14, ClpP [Cylindrospermopsis raciborskii CS-505]
 gi|281195964|gb|EFA70880.1| Peptidase S14, ClpP [Cylindrospermopsis raciborskii CS-505]
          Length = 201

 Score =  281 bits (720), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 100/190 (52%), Positives = 147/190 (77%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQ+ RGER++DIYSRLL+ERIVF+  Q++  +A LI AQLLFL++E+P+K+I +
Sbjct: 1   MIPIVIEQSGRGERAFDIYSRLLRERIVFLGQQVDSSLANLIVAQLLFLDSEDPEKDIYM 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM I+DTM+ I+P + T C G AASMG+ LLSAG KG R +LP++RI++
Sbjct: 61  YINSPGGSVTAGMGIFDTMKNIRPNVCTICTGLAASMGAFLLSAGTKGKRMSLPHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+  KR+LNE   ++ G+ ++ + +  +RD  MS  EA +
Sbjct: 121 HQPLGGAQGQATDIEIQAREILYHKRKLNEYLAEHTGQPFDRIAEDTERDFFMSPQEARE 180

Query: 198 WGVVDKVLMS 207
           +G++D+V+  
Sbjct: 181 YGLIDQVIDR 190


>gi|83943111|ref|ZP_00955571.1| Protease subunit of ATP-dependent Clp protease [Sulfitobacter sp.
           EE-36]
 gi|83846119|gb|EAP83996.1| Protease subunit of ATP-dependent Clp protease [Sulfitobacter sp.
           EE-36]
          Length = 211

 Score =  281 bits (720), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 129/197 (65%), Positives = 167/197 (84%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQT+RGER+YDI+SRLLKERI+F+ G + D M++LI AQLL LEAENP KEIS
Sbjct: 3   TLVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMSSLIVAQLLHLEAENPSKEIS 62

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGGVVT+G++IYDTMQ+IKP +ST  +GQAASMGSLLL AGEKGMRF+LPN+R++
Sbjct: 63  MYINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLQAGEKGMRFSLPNSRVM 122

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG+ GQA+DI  HAQ+  K+K RLNEIYVK+ G+  E+VE  L+RD+ MS  EA 
Sbjct: 123 VHQPSGGYQGQATDIMIHAQETQKLKTRLNEIYVKHTGQPLEKVEAALERDNFMSPEEAK 182

Query: 197 DWGVVDKVLMSRIDIEE 213
           DWG++D+++ +R  +++
Sbjct: 183 DWGLIDEIVENRGKMDD 199


>gi|303250639|ref|ZP_07336836.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302650627|gb|EFL80786.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 196

 Score =  281 bits (720), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 122/193 (63%), Positives = 156/193 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQT++GERSYDIYSRLLKERI+F+TGQ+EDHMA LI AQ+LFLEAE+P+K+I
Sbjct: 1   MALVPIVVEQTSKGERSYDIYSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVTAG+AIY TM FIKP ++T C GQA SMG+ LLS G KG RFALPNAR+
Sbjct: 61  YLYINSPGGVVTAGLAIYATMNFIKPDVATLCTGQACSMGAFLLSGGAKGKRFALPNARV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+  AQ+I+K+K  L     ++ G+ +E+V    +RD+ MSA EA
Sbjct: 121 MIHQPLGGARGQATDIQIQAQEILKLKEMLTRKMAEHSGQPFEKVAADTERDNFMSAVEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++DKVL  R
Sbjct: 181 MEYGLIDKVLTHR 193


>gi|258514515|ref|YP_003190737.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778220|gb|ACV62114.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 194

 Score =  281 bits (720), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 120/194 (61%), Positives = 158/194 (81%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
              LVP+VVEQTNRGERSYDIYSRLLK+RI+F+ G IED+ A LI AQLLFLEAE+P+K+
Sbjct: 1   MSTLVPIVVEQTNRGERSYDIYSRLLKDRIIFIGGPIEDYTANLIIAQLLFLEAEDPEKD 60

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I LYINSPGGVVTAGMAIYDTMQ+IKPP+ST C+GQAASMGS LL+AG  G RFALP AR
Sbjct: 61  IHLYINSPGGVVTAGMAIYDTMQYIKPPVSTICLGQAASMGSFLLAAGAPGKRFALPYAR 120

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQPSGG  GQA+DI  HA++I+++K  LN++  K+  +  +++ +  +RD  MSA +
Sbjct: 121 IMIHQPSGGMQGQATDIGIHAKEILRMKEILNKLLSKHTKQPLDKITRDSERDFFMSAED 180

Query: 195 ACDWGVVDKVLMSR 208
           A ++G++D+++  +
Sbjct: 181 AKEYGIIDQIVTRK 194


>gi|198283159|ref|YP_002219480.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218667656|ref|YP_002425388.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247680|gb|ACH83273.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218519869|gb|ACK80455.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 214

 Score =  281 bits (720), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 133/197 (67%), Positives = 162/197 (82%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG VPMVVEQT RGERSYDIYSRLLKER+VF+ GQ+ED MA L+ AQLLFLEAENP K+I
Sbjct: 16  LGYVPMVVEQTGRGERSYDIYSRLLKERVVFLVGQVEDMMANLVVAQLLFLEAENPDKDI 75

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGG VTAGMAIYDTMQF++P IST C+GQAASMG++LL+AG +G R+ALPNARI
Sbjct: 76  ALYINSPGGSVTAGMAIYDTMQFVRPKISTVCIGQAASMGAVLLAAGAEGKRYALPNARI 135

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +LHQPSGGF GQA DIE H ++I++I+ RLN+I V + G+  E +E+ LDRD  MSA EA
Sbjct: 136 MLHQPSGGFQGQAHDIEIHTKEILRIRERLNDILVHHTGQGRERIEQDLDRDFFMSAEEA 195

Query: 196 CDWGVVDKVLMSRIDIE 212
             + +VD V+  R + E
Sbjct: 196 QTYHLVDAVISHRGENE 212


>gi|160947717|ref|ZP_02094884.1| hypothetical protein PEPMIC_01652 [Parvimonas micra ATCC 33270]
 gi|158446851|gb|EDP23846.1| hypothetical protein PEPMIC_01652 [Parvimonas micra ATCC 33270]
          Length = 192

 Score =  281 bits (719), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 118/192 (61%), Positives = 158/192 (82%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+PMVVEQTNRGERSYDIYSRLLKERI+F++G++ D MA LI AQLLFLE+E+P+K+I
Sbjct: 1   MALIPMVVEQTNRGERSYDIYSRLLKERIIFLSGEVNDQMADLIVAQLLFLESEDPKKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG V+AG+AIYDTMQ+IKP +ST C+G+AASMG+ LL++G KG RFALPNA I
Sbjct: 61  QIYINSPGGSVSAGLAIYDTMQYIKPDVSTICIGRAASMGAFLLTSGAKGKRFALPNADI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA DI+  AQ I++++  LNEI  K  G++ +++EK  DRD  MSA EA
Sbjct: 121 MIHQPLGGAQGQAEDIKIQAQKILQVRATLNEILAKRTGQSLKKIEKDTDRDFYMSAYEA 180

Query: 196 CDWGVVDKVLMS 207
            ++G++D+V+ +
Sbjct: 181 KEYGIIDEVIEN 192


>gi|78780133|ref|YP_398245.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Prochlorococcus marinus str. MIT 9312]
 gi|115311352|sp|Q317Y6|CLPP4_PROM9 RecName: Full=ATP-dependent Clp protease proteolytic subunit 4;
           AltName: Full=Endopeptidase Clp 4
 gi|78713632|gb|ABB50809.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Prochlorococcus marinus str. MIT 9312]
          Length = 219

 Score =  281 bits (719), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 105/204 (51%), Positives = 148/204 (72%)

Query: 4   EGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQL 63
              +  +S    +G VP V+EQ+ RGER++DIYSRLL+ERI+F+   I D ++  + AQL
Sbjct: 16  SSISSYESIHKTIGAVPTVIEQSGRGERAFDIYSRLLRERIIFLGSGINDQVSDSLVAQL 75

Query: 64  LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           LFLEAE+P+K+I +YINSPGG VTAGMAIYDTMQ I P + T C G AASMG+ LLS G 
Sbjct: 76  LFLEAEDPEKDIQIYINSPGGSVTAGMAIYDTMQQISPDVVTICFGVAASMGAFLLSGGA 135

Query: 124 KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
           KG R ALPN+RI++HQP GG  GQA +IE  A++I+ +K+ LN +  ++ G+  E++ + 
Sbjct: 136 KGKRLALPNSRIMIHQPLGGAQGQAVEIEIQAKEILFLKKTLNSLLAEHTGQPLEKINED 195

Query: 184 LDRDHIMSASEACDWGVVDKVLMS 207
            +RD+ +S SEA ++G++DKV+  
Sbjct: 196 TERDYFLSPSEAVEYGLIDKVIKK 219


>gi|260438109|ref|ZP_05791925.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Butyrivibrio
           crossotus DSM 2876]
 gi|292809590|gb|EFF68795.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Butyrivibrio
           crossotus DSM 2876]
          Length = 194

 Score =  281 bits (719), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 115/194 (59%), Positives = 150/194 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGERSYDIYSRLLK+RI+F+  ++ D  A ++ AQLLFLEAE+P K+I
Sbjct: 1   MSLVPYVIEQTSRGERSYDIYSRLLKDRIIFLGEEVTDVSANIVVAQLLFLEAEDPGKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMAIYDTM +IK  +ST C+G AASMG+ LLS G KG RFALPNA I
Sbjct: 61  QLYINSPGGSVTAGMAIYDTMNYIKSDVSTICIGMAASMGAFLLSGGTKGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  G ASD++  A  I+K K++LNEI  KN GK  + +E+  DRD+ M+A EA
Sbjct: 121 MIHQPSGGSRGMASDMKIVADQILKTKQKLNEILAKNTGKPIDVIERDTDRDNYMTAQEA 180

Query: 196 CDWGVVDKVLMSRI 209
            ++G++D ++ +R 
Sbjct: 181 LEYGLIDSIIENRK 194


>gi|261405359|ref|YP_003241600.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
           sp. Y412MC10]
 gi|329923469|ref|ZP_08278950.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Paenibacillus sp. HGF5]
 gi|261281822|gb|ACX63793.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
           sp. Y412MC10]
 gi|328941269|gb|EGG37564.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Paenibacillus sp. HGF5]
          Length = 196

 Score =  281 bits (719), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 120/192 (62%), Positives = 154/192 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT+RGERSYDIYSRLLK+RI+F++  I+D +A L+ AQLLFL AE+P+K+I
Sbjct: 1   MSLVPMVVEQTSRGERSYDIYSRLLKDRIIFLSSAIDDDVANLVIAQLLFLAAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG VTAGM IYDTMQ IKP +ST C+G AASMGSLLL+AG  G R+AL N+ +
Sbjct: 61  SLYINSPGGSVTAGMGIYDTMQLIKPDVSTICVGMAASMGSLLLTAGAPGKRYALENSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDI+ HA  I+K +++LN+IYV+  G+  E++E+  DRD  MSA EA
Sbjct: 121 MIHQPLGGIQGQASDIQIHADWIIKTRQKLNQIYVERTGQPLEKIERDTDRDFFMSAEEA 180

Query: 196 CDWGVVDKVLMS 207
             +G++D VL S
Sbjct: 181 KAYGIIDDVLSS 192


>gi|149923964|ref|ZP_01912350.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Plesiocystis
           pacifica SIR-1]
 gi|149815196|gb|EDM74745.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Plesiocystis
           pacifica SIR-1]
          Length = 217

 Score =  281 bits (719), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 113/199 (56%), Positives = 155/199 (77%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           +      +P VVEQT+RGERS+DIYSRLLK+RIVF+   I D +A++I AQLLFLE+E+P
Sbjct: 6   QPPLSMNIPFVVEQTHRGERSWDIYSRLLKDRIVFLGDPINDRVASIIIAQLLFLESEDP 65

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+I LYINSPGGVVTAG+ IYDTMQ+++  ++T+C+GQAASMG+ LL+ G KG RFALP
Sbjct: 66  DKDIRLYINSPGGVVTAGLGIYDTMQYVRCDVATYCLGQAASMGAFLLAGGAKGKRFALP 125

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           NARI++HQP GG SGQA+DIE  A++I+++K +LNEI  ++ G+T +E+    DRD+ M 
Sbjct: 126 NARIMIHQPHGGASGQATDIEIQAREILRLKAKLNEIMARHSGRTVDEILADTDRDNFMG 185

Query: 192 ASEACDWGVVDKVLMSRID 210
           A EA  +G++D+VL    +
Sbjct: 186 ADEAKKYGLIDEVLRRSEE 204


>gi|115311358|sp|Q2SK36|CLPP_HAHCH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
          Length = 204

 Score =  281 bits (719), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 121/198 (61%), Positives = 155/198 (78%), Gaps = 1/198 (0%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
           ++   LVPMVVEQT RGERSYDIYSRLLKERI+F+ GQ+EDHMA L+ AQLLFLE+ENP 
Sbjct: 5   EIANALVPMVVEQTARGERSYDIYSRLLKERIIFLVGQVEDHMANLVVAQLLFLESENPD 64

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K+I LYINSPGG VTAG++IYDTMQFIKP +ST C+GQAASMG+LLLS G  G R+ LP+
Sbjct: 65  KDIHLYINSPGGSVTAGLSIYDTMQFIKPDVSTMCIGQAASMGALLLSGGAAGKRYCLPH 124

Query: 133 ARILLHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           +R+++HQP  GG  GQASDIE HA++I+ ++ +LN I  K+ G+  E + +  DRD  M 
Sbjct: 125 SRVMIHQPLLGGLQGQASDIEIHAKEILLLREKLNNILSKHTGQDIETIARDTDRDKFMD 184

Query: 192 ASEACDWGVVDKVLMSRI 209
           A  A ++G++D VL  R+
Sbjct: 185 AEMAKNYGLIDSVLDKRV 202


>gi|317133441|ref|YP_004092755.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Ethanoligenens harbinense YUAN-3]
 gi|315471420|gb|ADU28024.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Ethanoligenens harbinense YUAN-3]
          Length = 194

 Score =  281 bits (719), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 110/194 (56%), Positives = 151/194 (77%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
              LVP V+EQT+RGERSYDI+SRLL +RI+ ++ Q+ D  A+L+ AQLLFLE ++P K+
Sbjct: 1   MSNLVPYVIEQTSRGERSYDIFSRLLNDRIIMLSDQVNDVTASLVVAQLLFLEGQDPDKD 60

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I LYINSPGG +T+GMAI+DTMQ++K  +ST C+G AASMGS LL+AG KG RF LPN+ 
Sbjct: 61  IQLYINSPGGSITSGMAIFDTMQYVKCDVSTICIGMAASMGSFLLAAGTKGKRFVLPNSE 120

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQPSGG  GQASDI+  A+ I++I++R+NE+Y    GK  EE+E+  +RD+ ++A E
Sbjct: 121 IMIHQPSGGAQGQASDIKIAAEHIIRIRKRMNELYSGFTGKPVEEIERDTERDNFLTAEE 180

Query: 195 ACDWGVVDKVLMSR 208
           A  +G+VDKV+  R
Sbjct: 181 AVAYGLVDKVITKR 194


>gi|315645729|ref|ZP_07898853.1| hypothetical protein PVOR_09635 [Paenibacillus vortex V453]
 gi|315279207|gb|EFU42517.1| hypothetical protein PVOR_09635 [Paenibacillus vortex V453]
          Length = 196

 Score =  281 bits (719), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 120/192 (62%), Positives = 153/192 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT+RGERSYDIYSRLLK+RI+F++  I+D +A L+ AQLLFL AE+P+K+I
Sbjct: 1   MSLVPMVVEQTSRGERSYDIYSRLLKDRIIFLSSAIDDDVANLVIAQLLFLAAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG VTAGM IYDTMQ IKP +ST C+G AASMGSLLL+AG  G R+AL N+ +
Sbjct: 61  SLYINSPGGSVTAGMGIYDTMQLIKPDVSTICVGMAASMGSLLLTAGAPGKRYALENSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDI+ HA  I+K + +LN+IYV+  G+  E++E+  DRD  MSA EA
Sbjct: 121 MIHQPLGGIQGQASDIQIHADWIIKTRHKLNQIYVERTGQPLEKIERDTDRDFFMSAEEA 180

Query: 196 CDWGVVDKVLMS 207
             +G++D VL S
Sbjct: 181 KAYGIIDDVLSS 192


>gi|294501768|ref|YP_003565468.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           megaterium QM B1551]
 gi|295707118|ref|YP_003600193.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bacillus
           megaterium DSM 319]
 gi|294351705|gb|ADE72034.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           megaterium QM B1551]
 gi|294804777|gb|ADF41843.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           megaterium DSM 319]
          Length = 195

 Score =  281 bits (719), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 110/192 (57%), Positives = 152/192 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL AE+P+K+I
Sbjct: 1   MNLIPTVIEQTNRGERAYDIYSRLLKDRIIILGSAIDDNVANSIVSQLLFLAAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG +TAGMAIYDTMQFIKP +ST C+G AASMG+ LL+AGEKG RFALPN+ +
Sbjct: 61  SLYINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRFALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN I  +  G+  E +++  DRD+ M+A  A
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILFLREKLNSILAERTGQPLEVLQRDTDRDNFMTAERA 180

Query: 196 CDWGVVDKVLMS 207
            ++G++DKVL +
Sbjct: 181 LEYGLIDKVLEN 192


>gi|241758856|ref|ZP_04756969.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
           flavescens SK114]
 gi|319638311|ref|ZP_07993074.1| ATP-dependent Clp protease proteolytic subunit [Neisseria mucosa
           C102]
 gi|241321064|gb|EER57277.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
           flavescens SK114]
 gi|317400584|gb|EFV81242.1| ATP-dependent Clp protease proteolytic subunit [Neisseria mucosa
           C102]
          Length = 206

 Score =  281 bits (719), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 122/197 (61%), Positives = 159/197 (80%), Gaps = 2/197 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ+ RGER++DIYSRLLKERIVF+ G + D  A L+ AQLLFLE+ENP K+I  
Sbjct: 9   LVPTVIEQSGRGERAFDIYSRLLKERIVFLIGPVTDESANLVVAQLLFLESENPDKDIFF 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM+IYDTM FIKP +ST C+GQAASMG+ LLSAGEKG RFALPN+RI++
Sbjct: 69  YINSPGGSVTAGMSIYDTMNFIKPHVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMI 128

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG +GQASDIE HA++++KIK +LN +  K+C +   ++E+  DRD+ MSA EA
Sbjct: 129 HQPLISGGLAGQASDIEIHAKELLKIKEKLNRLLAKHCDRDLADLERDTDRDNYMSADEA 188

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G++D+VL +R  ++
Sbjct: 189 KEYGLIDQVLENRASLQ 205


>gi|258511812|ref|YP_003185246.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257478538|gb|ACV58857.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 198

 Score =  281 bits (719), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 112/188 (59%), Positives = 147/188 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            +P V+EQT+RGER+YDIYSRLLK+RIV +   I+D +A  I AQLLFL A++P+K+I +
Sbjct: 4   PIPYVIEQTSRGERTYDIYSRLLKDRIVILGTPIDDQVANSIVAQLLFLAADDPEKDIQM 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGMAIYDTMQ I+P +ST C+G AASMG+ LL+AGEKG R+ALPNA I++
Sbjct: 64  YINSPGGSVTAGMAIYDTMQHIRPAVSTLCIGMAASMGAFLLAAGEKGKRYALPNAEIMI 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI+ HA+ I+K K +LN +  +  G+  E +E+  DRDH M+A EA  
Sbjct: 124 HQPLGGVEGQASDIKIHAEWILKTKDKLNRLLSERTGQPLEVIERDTDRDHFMTAEEAKA 183

Query: 198 WGVVDKVL 205
           +G++D+VL
Sbjct: 184 YGLIDEVL 191


>gi|90419399|ref|ZP_01227309.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90336336|gb|EAS50077.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 210

 Score =  281 bits (719), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 151/205 (73%), Positives = 180/205 (87%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
              +  + LVPMVVEQTNRGER+YDI+SRLLKER++F+TG IED MATL+CAQLLFLEAE
Sbjct: 3   HPVETAMNLVPMVVEQTNRGERAYDIFSRLLKERVIFITGPIEDSMATLVCAQLLFLEAE 62

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP+KEI+LYINSPGGVVT+GMAIYDTMQFIKP +ST C+GQAASMGSLLL AG K MRFA
Sbjct: 63  NPKKEIALYINSPGGVVTSGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLCAGHKDMRFA 122

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
            PNARI++HQPSGGFSGQASDIERHAQDI+K+KRRLNE+YV++ G+ YE VE+TLDRDH 
Sbjct: 123 TPNARIMVHQPSGGFSGQASDIERHAQDIIKLKRRLNEVYVEHTGQDYETVERTLDRDHF 182

Query: 190 MSASEACDWGVVDKVLMSRIDIEEK 214
           M+A EA ++G++DKV  SR  +E +
Sbjct: 183 MTAQEAREFGLIDKVYSSRDALEAE 207


>gi|323140768|ref|ZP_08075687.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Phascolarctobacterium sp. YIT 12067]
 gi|322414786|gb|EFY05586.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Phascolarctobacterium sp. YIT 12067]
          Length = 197

 Score =  281 bits (719), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 113/197 (57%), Positives = 158/197 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP+VVEQ++RGERSYDIYSRLLK+RIVFVTG I+D+MA ++ AQLLFLE+E+P K+I
Sbjct: 1   MNYVPIVVEQSSRGERSYDIYSRLLKDRIVFVTGPIDDNMANVVIAQLLFLESEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG V+AGMAIYDTMQ+IKP +ST CMG AASM S+LL+AG  G RFALP +R+
Sbjct: 61  HLYINSPGGSVSAGMAIYDTMQYIKPDVSTICMGMAASMASVLLAAGAPGKRFALPYSRV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE HA++I++I+  +N++  K+ G+T E++    +RDH +++ EA
Sbjct: 121 MIHQPLGGAQGQATEIEIHAREILRIREEMNQVLAKHTGQTVEKIAADTERDHYLTSKEA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G++D+V+      E
Sbjct: 181 KEYGLIDEVVSRSKSAE 197


>gi|226529931|ref|NP_001141255.1| hypothetical protein LOC100273342 [Zea mays]
 gi|194703568|gb|ACF85868.1| unknown [Zea mays]
          Length = 304

 Score =  281 bits (719), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 117/193 (60%), Positives = 156/193 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+E T+RGER+YDI+SRLLKERIV + G I D  A+L+ AQLLFLE+ENP K + 
Sbjct: 76  GLVPMVIETTSRGERAYDIFSRLLKERIVCINGPIADDTASLVVAQLLFLESENPLKPVH 135

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGVVTAG+AIYDTMQ+I+ P++T C+GQAASMGSLLL+AG  G R ALPNAR++
Sbjct: 136 LYINSPGGVVTAGLAIYDTMQYIRCPVTTLCIGQAASMGSLLLAAGAPGERRALPNARVM 195

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  GQA+DI   A++I+K++ RLN+IY K+  +  +++E+ ++RD  M   EA 
Sbjct: 196 IHQPSGGAQGQATDIAIQAKEILKLRDRLNKIYQKHTRQPIDKIEQCMERDLFMDPDEAR 255

Query: 197 DWGVVDKVLMSRI 209
           DWG++D+V+ +R 
Sbjct: 256 DWGLIDEVIENRP 268


>gi|237753395|ref|ZP_04583875.1| ATP-dependent clp protease proteolytic subunit [Helicobacter
           winghamensis ATCC BAA-430]
 gi|229375662|gb|EEO25753.1| ATP-dependent clp protease proteolytic subunit [Helicobacter
           winghamensis ATCC BAA-430]
          Length = 196

 Score =  281 bits (719), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 111/189 (58%), Positives = 151/189 (79%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP V+E+T RGER+YDIYSRLLK+RI+ ++GQI+D +A+ I AQLLFLEAE+P+K+I LY
Sbjct: 5   VPTVIEKTGRGERAYDIYSRLLKDRIILLSGQIDDGLASSIVAQLLFLEAEDPEKDIYLY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGVVT+G++IYDTM ++KP IST C+GQAASMG+ LLS G KG R++LPN+RI++H
Sbjct: 65  INSPGGVVTSGLSIYDTMNYVKPDISTICIGQAASMGAFLLSCGTKGKRYSLPNSRIMIH 124

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA++IE  A++I+++K  LNEI   N  +  E++ K  DRD  +SA EA ++
Sbjct: 125 QPLGGAQGQATEIEIQAKEILRLKSSLNEILASNTNQPLEKIAKDTDRDFYLSAKEAQEY 184

Query: 199 GVVDKVLMS 207
           G++D VL  
Sbjct: 185 GLIDSVLEK 193


>gi|119503321|ref|ZP_01625405.1| ATP-dependent Clp protease proteolytic subunit [marine gamma
           proteobacterium HTCC2080]
 gi|119460967|gb|EAW42058.1| ATP-dependent Clp protease proteolytic subunit [marine gamma
           proteobacterium HTCC2080]
          Length = 212

 Score =  281 bits (719), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 118/211 (55%), Positives = 160/211 (75%), Gaps = 1/211 (0%)

Query: 6   CAKKDSEDVF-LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLL 64
              +  +D+  LGL+PMV+EQT+RGERS+DIYSRLLKER++F  G +ED+MA LI AQLL
Sbjct: 2   IHDRPPQDMSNLGLIPMVIEQTSRGERSFDIYSRLLKERVIFAVGPVEDNMANLIVAQLL 61

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           FLE+ENP K+I LYINSPGG VTAG++IYDTMQF+KP +ST C+GQAASMG+ LLS G  
Sbjct: 62  FLESENPDKDIHLYINSPGGSVTAGLSIYDTMQFVKPDVSTMCLGQAASMGAFLLSGGAS 121

Query: 125 GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
           G R+ LPNAR ++HQPSGG  GQA+DI+  A++I+ I+ RLN +  ++ G+  E +E+  
Sbjct: 122 GKRYILPNARTMIHQPSGGAQGQATDIDIQAKEILIIRERLNRLMAEHTGQPLEVIERDT 181

Query: 185 DRDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
           +RD  M A ++  +G+VD V+ +R  + E S
Sbjct: 182 ERDRFMDAEQSQSYGLVDHVVNNREVVAEDS 212


>gi|28211967|ref|NP_782911.1| ATP-dependent Clp protease proteolytic subunit [Clostridium tetani
           E88]
 gi|28204410|gb|AAO36848.1| ATP-dependent clp protease proteolytic subunit [Clostridium tetani
           E88]
          Length = 202

 Score =  281 bits (719), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 118/200 (59%), Positives = 158/200 (79%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
             E+ F+ LVP+VVEQTNRGERSYDIYSRLLK+RI+ ++ Q+ D  A+LI AQLLFLEAE
Sbjct: 3   YKEEKFMSLVPVVVEQTNRGERSYDIYSRLLKDRIIMLSDQVNDVTASLIVAQLLFLEAE 62

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           +P K+I LYINSPGG +T+GMAIYDTMQ+IKP +ST C+G AASMG+ LL+AG KG RFA
Sbjct: 63  DPDKDIFLYINSPGGSITSGMAIYDTMQYIKPDVSTICIGMAASMGAFLLAAGAKGKRFA 122

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPN+ I++HQP GGF GQA+DI  HA  I+KIK+ LN I  +  G+  E +++  +RD+ 
Sbjct: 123 LPNSEIMIHQPLGGFQGQATDIGIHADRILKIKQNLNSILSEKTGQPLEVIQRDTERDNF 182

Query: 190 MSASEACDWGVVDKVLMSRI 209
           M A++A D+G++D+V++ + 
Sbjct: 183 MDANQAKDYGLIDEVMVKKK 202


>gi|113953857|ref|YP_729303.1| ATP-dependent Clp protease proteolytic subunit ClpP [Synechococcus
           sp. CC9311]
 gi|113881208|gb|ABI46166.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. CC9311]
          Length = 229

 Score =  281 bits (719), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 102/189 (53%), Positives = 141/189 (74%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP VVEQ+ RGERS+DIYSRLL+ERI+F+   + D +A  + AQLLFLEAE+P+K+I +Y
Sbjct: 31  VPTVVEQSGRGERSFDIYSRLLRERIIFLGTDVNDQVADALVAQLLFLEAEDPEKDIQVY 90

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG +TAG+AIYDTMQ + P + T C G AASMG+ LLS G KG R ALPNARI++H
Sbjct: 91  INSPGGSITAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGCKGKRLALPNARIMIH 150

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA DIE  AQ+I+ +K  LN +   + G+   ++ +  +RD+ +S +EA ++
Sbjct: 151 QPLGGAQGQAVDIEIMAQEILFLKETLNGLMADHTGQPLAKITEDTERDYFLSPAEAVEY 210

Query: 199 GVVDKVLMS 207
           G++D+V+ +
Sbjct: 211 GLIDRVVDN 219


>gi|114707244|ref|ZP_01440142.1| ATP-dependent Clp protease proteolytic subunit [Fulvimarina pelagi
           HTCC2506]
 gi|114537440|gb|EAU40566.1| ATP-dependent Clp protease proteolytic subunit [Fulvimarina pelagi
           HTCC2506]
          Length = 217

 Score =  281 bits (719), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 149/204 (73%), Positives = 180/204 (88%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           K   +  + LVPMVVEQTNRGER+YDI+SRLLKER++F+TG IED MATL+CAQLLFLEA
Sbjct: 2   KHPIETAMNLVPMVVEQTNRGERAYDIFSRLLKERVIFITGPIEDSMATLVCAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI+LYINSPGGVVT+GMAIYDTMQFI+P ++T C+GQAASMGSLLL AGEK MRF
Sbjct: 62  ENPKKEIALYINSPGGVVTSGMAIYDTMQFIRPAVTTLCIGQAASMGSLLLCAGEKDMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           A PNARI++HQPSGGF GQASDIERHAQDI+K+KRRLNE YVK+ G+ YE +E+TLDRDH
Sbjct: 122 ATPNARIMVHQPSGGFQGQASDIERHAQDIIKLKRRLNETYVKHTGQDYETIERTLDRDH 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIE 212
            M+A E+ ++G++DKV  SR++ E
Sbjct: 182 FMTAEESLEFGLIDKVYSSRVEQE 205


>gi|123969397|ref|YP_001010255.1| Clp protease proteolytic subunit [Prochlorococcus marinus str.
           AS9601]
 gi|126697184|ref|YP_001092070.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9301]
 gi|123199507|gb|ABM71148.1| Clp protease proteolytic subunit [Prochlorococcus marinus str.
           AS9601]
 gi|126544227|gb|ABO18469.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9301]
          Length = 214

 Score =  281 bits (719), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 104/204 (50%), Positives = 148/204 (72%)

Query: 4   EGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQL 63
              +  +S +  +  VP V+EQ+ RGER++DIYSRLL+ERI+F+   I D ++  + AQL
Sbjct: 11  SSISSYESNNKTIAAVPTVIEQSGRGERAFDIYSRLLRERIIFLGTGINDQVSDSLVAQL 70

Query: 64  LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           LFLEAE+P+K+I +YINSPGG VTAGMAIYDTMQ I P + T C G AASMG+ LLS G 
Sbjct: 71  LFLEAEDPEKDIQIYINSPGGSVTAGMAIYDTMQQISPDVVTICFGVAASMGAFLLSGGA 130

Query: 124 KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
           KG R ALPN+RI++HQP GG  GQA +IE  A++I+ +K+ LN +  ++ G+  E++ + 
Sbjct: 131 KGKRLALPNSRIMIHQPLGGAQGQAVEIEIQAKEILFLKKTLNSLLAEHTGQPLEKINED 190

Query: 184 LDRDHIMSASEACDWGVVDKVLMS 207
            +RD+ +S SEA ++G++DKV+  
Sbjct: 191 TERDYFLSPSEAVEYGLIDKVIKK 214


>gi|315924138|ref|ZP_07920364.1| ATP-dependent Clp protease, protease subunit [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315622540|gb|EFV02495.1| ATP-dependent Clp protease, protease subunit [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 194

 Score =  281 bits (719), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 117/193 (60%), Positives = 150/193 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMV+EQT RGERS+DIYSRLLKERIVF+ G+I D  A+L+ AQL+FLEAENP ++I
Sbjct: 1   MNLVPMVIEQTGRGERSFDIYSRLLKERIVFLDGEITDETASLVVAQLVFLEAENPDEDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG VTAG AI DTM FIK  +ST C G AASMG+ LL+AG KG R ALPNA I
Sbjct: 61  FMYINSPGGSVTAGFAIMDTMNFIKCDVSTLCYGMAASMGAFLLAAGAKGKRQALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQ+SD+E HA+ +++ K +LN I  +N G+++E + K  DRDH MSA EA
Sbjct: 121 MIHQPLGGAQGQSSDVEIHARHLLETKEKLNRILSENSGQSFETIVKDTDRDHFMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D+V+ SR
Sbjct: 181 KTYGLIDQVITSR 193


>gi|294627913|ref|ZP_06706492.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|292597827|gb|EFF41985.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
          Length = 208

 Score =  280 bits (718), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 122/195 (62%), Positives = 163/195 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           L LVPMVVEQT+RGER+YDIYS LLKER++F+ G I+DHMA +I AQLLFLEA+NP+K+I
Sbjct: 8   LNLVPMVVEQTSRGERAYDIYSCLLKERLIFLVGPIDDHMANVIVAQLLFLEADNPEKDI 67

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGGVVTAGMAIYDTMQ+IKP +ST C+GQAASMG+LLL++G  G R+ALPN+R+
Sbjct: 68  SIYINSPGGVVTAGMAIYDTMQYIKPDVSTICVGQAASMGALLLASGAAGKRYALPNSRV 127

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DI+ HA++I+ ++ RLNEI  K+ G++ E + +  +RD+  SA +A
Sbjct: 128 MIHQPLGGFQGQATDIDIHAREILTLRSRLNEILAKHTGQSLETIARDTERDNFKSAVDA 187

Query: 196 CDWGVVDKVLMSRID 210
             +G+VD+VL  R +
Sbjct: 188 QAYGLVDQVLERRPE 202


>gi|240146206|ref|ZP_04744807.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Roseburia
           intestinalis L1-82]
 gi|257201662|gb|EEU99946.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Roseburia
           intestinalis L1-82]
 gi|291536689|emb|CBL09801.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Roseburia
           intestinalis M50/1]
 gi|291537973|emb|CBL11084.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Roseburia
           intestinalis XB6B4]
          Length = 193

 Score =  280 bits (718), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 113/193 (58%), Positives = 151/193 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGER+YDIYSRLLK+RI+F+  ++ +  A+L  AQLLFLE+E+P K+I
Sbjct: 1   MSLVPYVIEQTSRGERNYDIYSRLLKDRIIFLGEEVNETTASLTVAQLLFLESEDPGKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG+VTAG+AIYDTMQ+IK  +ST C+G AASMG+ LLS G KG R ALPNA I
Sbjct: 61  QLYINSPGGMVTAGLAIYDTMQYIKCDVSTICIGLAASMGAFLLSGGTKGKRLALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I+  A++I+K K+RLNEI   N GK Y+ +    +RD+ MSA EA
Sbjct: 121 MIHQPSGGAKGQATEIQIAAENILKTKKRLNEILAANTGKPYDVIAADTERDYYMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D V+ +R
Sbjct: 181 KAYGLIDDVITNR 193


>gi|170720927|ref|YP_001748615.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas putida
           W619]
 gi|325274289|ref|ZP_08140400.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas sp.
           TJI-51]
 gi|226706466|sp|B1J692|CLPP_PSEPW RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|169758930|gb|ACA72246.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
           putida W619]
 gi|324100572|gb|EGB98307.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas sp.
           TJI-51]
          Length = 213

 Score =  280 bits (718), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 120/192 (62%), Positives = 155/192 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+EQ+ RGER+YDIYSRLLKER++F+ G +ED+MA L+ AQ+LFLEAENP K+I 
Sbjct: 18  GLVPMVIEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLVVAQMLFLEAENPDKDIH 77

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+ LL+AG KG R  LPN+R++
Sbjct: 78  LYINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAAGAKGKRHCLPNSRVM 137

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQA+DIE HAQ+I+ IK RLNE+   + G+  E +++  +RD+ MSAS A 
Sbjct: 138 IHQPLGGFQGQATDIEIHAQEILNIKARLNELLAYHTGQDLETIKRDTERDNFMSASRAA 197

Query: 197 DWGVVDKVLMSR 208
           ++G++D V   R
Sbjct: 198 EYGLIDSVYDKR 209


>gi|18203597|sp|Q9X5N0|CLPP2_MYXXA RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|4838463|gb|AAD31002.1|AF127082_1 ATP-dependent protease proteolytic subunit ClpP [Myxococcus
           xanthus]
          Length = 206

 Score =  280 bits (718), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 115/192 (59%), Positives = 156/192 (81%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            VP V+EQT+RGERSYDI SRLLK+RIV +  +I+D +A +I AQLLFLE+E+P K+I+L
Sbjct: 5   PVPYVIEQTHRGERSYDIISRLLKDRIVMLGTEIDDDVANVIVAQLLFLESEDPDKDINL 64

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+AIYDTMQ++K P+ST C+GQAASMG++LL AG KG R+ALP++RI++
Sbjct: 65  YINSPGGSVTAGLAIYDTMQYVKCPVSTICVGQAASMGAVLLLAGAKGKRYALPSSRIMI 124

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+++K +LNE+ VK+ G++ E VEK  DRD+ M ASEA  
Sbjct: 125 HQPLGGVRGQATDIEIQAKEILRMKAKLNELIVKHTGQSIERVEKDTDRDYFMGASEAKA 184

Query: 198 WGVVDKVLMSRI 209
           +G++D++   R 
Sbjct: 185 YGIIDEIQNPRK 196


>gi|115524517|ref|YP_781428.1| endopeptidase Clp [Rhodopseudomonas palustris BisA53]
 gi|122296222|sp|Q07NN6|CLPP_RHOP5 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|115518464|gb|ABJ06448.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Rhodopseudomonas palustris BisA53]
          Length = 211

 Score =  280 bits (718), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 139/208 (66%), Positives = 176/208 (84%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  + ++ LVPMVVEQTNRGER+YDI+SRLLKERI+F+TG +ED M+TL+ AQLLFLEA
Sbjct: 2   RDPVETYMNLVPMVVEQTNRGERAYDIFSRLLKERIIFLTGPVEDGMSTLVVAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEIS+YINSPGGVVT+G+AIYDTMQFI+PP+ST C GQAASMGSLLL AG K MRF
Sbjct: 62  ENPKKEISMYINSPGGVVTSGLAIYDTMQFIRPPVSTLCTGQAASMGSLLLCAGAKDMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPNARI++HQPSGGF GQA+DI  HAQ+I+ +K+RLNEIYVK+ G+TY+ +E  L+RD 
Sbjct: 122 SLPNARIMVHQPSGGFQGQATDIMLHAQEILNLKKRLNEIYVKHTGQTYKAIEDALERDK 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIEEKSK 216
            ++A  A D+G+VDKV+  R +    +K
Sbjct: 182 FLTADMARDFGLVDKVIDKRPEEASPAK 209


>gi|116243118|sp|Q1MIM7|CLPP2_RHIL3 RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|115256102|emb|CAK07183.1| putative ATP-dependent Clp protease proteolytic subunit [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 201

 Score =  280 bits (718), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 159/197 (80%), Positives = 182/197 (92%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQTNRGERSYDIYSRLLKERI+F+TG +EDHMATL+CAQLLFLEAENP+KEI
Sbjct: 1   MALVPMVVEQTNRGERSYDIYSRLLKERIIFLTGAVEDHMATLVCAQLLFLEAENPKKEI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGGVVTAGMAIYDTMQFIKP +ST C+GQAASMGSLLL+AG K MRFA PN+RI
Sbjct: 61  ALYINSPGGVVTAGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLAAGHKDMRFATPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGGF GQASDIERHA+DI+K+KRRLNE+YVK+ G+TYEEVEKTLDRDH M A EA
Sbjct: 121 MVHQPSGGFQGQASDIERHARDILKMKRRLNEVYVKHTGRTYEEVEKTLDRDHFMDADEA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
             WGV+DKVL SR+++E
Sbjct: 181 QSWGVIDKVLTSRLEME 197


>gi|218672748|ref|ZP_03522417.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli
           GR56]
          Length = 203

 Score =  280 bits (718), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 159/197 (80%), Positives = 182/197 (92%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQTNRGERSYDIYSRLLKERI+F+TG +EDHMATL+CAQLLFLEAENP+KEI
Sbjct: 1   MALVPMVVEQTNRGERSYDIYSRLLKERIIFLTGAVEDHMATLVCAQLLFLEAENPKKEI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGGVVTAGMAIYDTMQFIKP +ST C+GQAASMGSLLL+AG K MRFA PN+RI
Sbjct: 61  ALYINSPGGVVTAGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLAAGHKDMRFATPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGGF GQASDIERHA+DI+K+KRRLNE+YVK+ G+TYEEVEKTLDRDH M A EA
Sbjct: 121 MVHQPSGGFQGQASDIERHARDILKMKRRLNEVYVKHTGRTYEEVEKTLDRDHFMDADEA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
             WGV+DKVL SR+++E
Sbjct: 181 QGWGVIDKVLTSRLEME 197


>gi|170693532|ref|ZP_02884691.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           graminis C4D1M]
 gi|170141687|gb|EDT09856.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           graminis C4D1M]
          Length = 219

 Score =  280 bits (718), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 117/210 (55%), Positives = 154/210 (73%)

Query: 6   CAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF 65
                     LGLVP V+EQ+ RGER+YDIYSRLL+ERIVF+ G + +  A+LI AQLLF
Sbjct: 1   MQSSYPPVTGLGLVPTVIEQSGRGERAYDIYSRLLRERIVFLVGPVNEQSASLIVAQLLF 60

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           LE+ENP K+IS YINSPGG V  G+AIYDTMQFIKP +ST C G AASMG+ LL AG++G
Sbjct: 61  LESENPDKDISFYINSPGGSVYDGLAIYDTMQFIKPEVSTLCTGFAASMGTFLLCAGQRG 120

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
            R+ALPNARI++HQPSGG  G A+DI+  A++++ ++ RLN +  +  G++ EEV +  D
Sbjct: 121 KRYALPNARIMIHQPSGGSQGTAADIDIQAKEVLYLRERLNAMMAERTGRSIEEVARDTD 180

Query: 186 RDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
           RD+ MSAS A  +G+VD+VL +R  +   S
Sbjct: 181 RDNFMSASAAKTYGLVDEVLETRAALNSSS 210


>gi|288941151|ref|YP_003443391.1| ATP-dependent Clp protease proteolytic subunit ClpP [Allochromatium
           vinosum DSM 180]
 gi|288896523|gb|ADC62359.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Allochromatium vinosum DSM 180]
          Length = 215

 Score =  280 bits (718), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 119/211 (56%), Positives = 161/211 (76%)

Query: 5   GCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLL 64
             ++ D +   LGLVP+VVEQT RGERS+DIYSRLLKER++F+ G +EDHMA L+ AQLL
Sbjct: 4   PLSRTDWQPQGLGLVPIVVEQTARGERSFDIYSRLLKERVIFLVGPVEDHMANLVVAQLL 63

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           FLE+ENP K+I LYINSPGG VTAG+AIYDTM+FI+P +ST C+GQAASMG+LLL+ G  
Sbjct: 64  FLESENPDKDIHLYINSPGGSVTAGLAIYDTMRFIRPDVSTMCIGQAASMGALLLAGGAA 123

Query: 125 GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
           G RF LP++R+++HQP GGF GQA+DIE HA++I+ I+ RLN+I   + G+  E++ +  
Sbjct: 124 GKRFCLPHSRMMIHQPLGGFQGQATDIEIHAREILYIRERLNQILSHHTGQPIEKIAEDT 183

Query: 185 DRDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
           DRD  M    A ++G++D+V+  R  +  K 
Sbjct: 184 DRDRFMDGETAREYGLIDQVITERGPVASKK 214


>gi|15643458|ref|NP_228504.1| ATP-dependent Clp protease proteolytic subunit [Thermotoga maritima
           MSB8]
 gi|148269380|ref|YP_001243840.1| ATP-dependent Clp protease proteolytic subunit [Thermotoga
           petrophila RKU-1]
 gi|170288038|ref|YP_001738276.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermotoga
           sp. RQ2]
 gi|281411923|ref|YP_003346002.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermotoga
           naphthophila RKU-10]
 gi|6685314|sp|Q9WZF9|CLPP_THEMA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166214719|sp|A5IJ91|CLPP_THEP1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706553|sp|B1L812|CLPP_THESQ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|4981218|gb|AAD35777.1|AE001741_10 ATP-dependent Clp protease, proteolytic subunit [Thermotoga
           maritima MSB8]
 gi|147734924|gb|ABQ46264.1| ATP-dependent Clp protease proteolytic subunit ClpP [Thermotoga
           petrophila RKU-1]
 gi|170175541|gb|ACB08593.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermotoga
           sp. RQ2]
 gi|281373026|gb|ADA66588.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermotoga
           naphthophila RKU-10]
          Length = 203

 Score =  280 bits (718), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 113/190 (59%), Positives = 150/190 (78%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP+VVE T R ER+YDI+SRLLK+RIVF+   I+D++A L+ AQLLFLEAE+P K++ LY
Sbjct: 13  VPIVVESTGRYERAYDIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLY 72

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDTMQ+IK  +ST C+GQAASM ++LL+AG KG R+ALPNARI++H
Sbjct: 73  INSPGGSVTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIH 132

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  G A D+E   +++++IK  LN I  K+ G+  E++EK  DRD  MSA EA ++
Sbjct: 133 QPLGGAEGPAKDVEIITRELLRIKDLLNRILSKHTGQPIEKIEKDTDRDFFMSAEEAKEY 192

Query: 199 GVVDKVLMSR 208
           G+VDKV+ +R
Sbjct: 193 GIVDKVVSTR 202


>gi|172035557|ref|YP_001802058.1| ATP-dependent Clp protease proteolytic subunit [Cyanothece sp. ATCC
           51142]
 gi|171697011|gb|ACB49992.1| ATP-dependent Clp protease, proteolytic subunit [Cyanothece sp.
           ATCC 51142]
          Length = 202

 Score =  280 bits (718), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 100/192 (52%), Positives = 142/192 (73%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+E + RGER++DIYSRLL+ERIVF+  ++ D  + LI AQLLFLEAE+P K+I L
Sbjct: 1   MIPTVIETSGRGERAFDIYSRLLRERIVFLGQEVRDENSNLIVAQLLFLEAEDPDKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG+ I+DTM  I+P + T C+G AASMG+ LLSAG KG R +LPN+RI++
Sbjct: 61  YINSPGGSVSAGLGIFDTMNQIRPDVCTICIGLAASMGAFLLSAGAKGKRMSLPNSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+ +K  LN     + G+  +++ +  +RD  MSA EA +
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYLKGLLNNHLANHTGQPLDKIAEDTERDFFMSAEEAQE 180

Query: 198 WGVVDKVLMSRI 209
           +G++D+V+  R 
Sbjct: 181 YGLIDQVINRRP 192


>gi|313891581|ref|ZP_07825191.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Dialister microaerophilus UPII 345-E]
 gi|313120040|gb|EFR43222.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Dialister microaerophilus UPII 345-E]
          Length = 199

 Score =  280 bits (718), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 114/200 (57%), Positives = 159/200 (79%), Gaps = 1/200 (0%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP+VVEQT+ GERSYDIYSRLLK+RI+F+ GQIEDHMA +I AQLLFLEAE+P K+I
Sbjct: 1   MAYVPIVVEQTSHGERSYDIYSRLLKDRIIFLDGQIEDHMANVIIAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVTAGMAIYDTMQ+I+P +ST C+G  ASM ++LL++G KG RFALP++ +
Sbjct: 61  HLYINSPGGVVTAGMAIYDTMQYIRPDVSTICIGSCASMAAVLLTSGAKGKRFALPHSNV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE HA++I++++  LN I  K+ G++ + ++K  +RD+ M+A  A
Sbjct: 121 MIHQPLGGVQGQATEIEIHAREILRLRDELNGILAKHTGQSLDVIKKDTERDNFMTAENA 180

Query: 196 CDWGVVDKVLMSRIDIEEKS 215
             +G++DK+L  R ++  K 
Sbjct: 181 LKYGLIDKILT-RNELTAKD 199


>gi|34498013|ref|NP_902228.1| ATP-dependent Clp protease proteolytic subunit [Chromobacterium
           violaceum ATCC 12472]
 gi|60389718|sp|Q7NUY9|CLPP_CHRVO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|34103868|gb|AAQ60228.1| ATP-dependent Clp protease proteolytic subunit [Chromobacterium
           violaceum ATCC 12472]
          Length = 210

 Score =  280 bits (718), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 124/207 (59%), Positives = 159/207 (76%), Gaps = 3/207 (1%)

Query: 8   KKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           K   E   LGLVPMVVEQ+ RGER+YDIYSRLLKERIVF+ G + D  A L+ AQ+LFLE
Sbjct: 2   KSMMEPQGLGLVPMVVEQSGRGERAYDIYSRLLKERIVFLVGPVTDESANLVVAQMLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           +ENP K+I  YINSPGG +TAGM+IYDTM FIKP +ST C+GQAASMG+ LL+AG  G R
Sbjct: 62  SENPDKDIHFYINSPGGSITAGMSIYDTMNFIKPDVSTLCIGQAASMGAFLLAAGTHGKR 121

Query: 128 FALPNARILLHQP---SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
           FAL N+R+++HQP    GG SGQ +DIE HA+++VK+K ++NE+  K+ G+T E V+   
Sbjct: 122 FALENSRVMIHQPLLYGGGLSGQVTDIEIHARELVKVKAKMNELLAKHSGQTLERVQSDT 181

Query: 185 DRDHIMSASEACDWGVVDKVLMSRIDI 211
           +RD+ MSA EA  +G++DKVL SR D+
Sbjct: 182 ERDNFMSAEEARAYGMIDKVLSSRRDV 208


>gi|254485779|ref|ZP_05098984.1| Clp protease [Roseobacter sp. GAI101]
 gi|214042648|gb|EEB83286.1| Clp protease [Roseobacter sp. GAI101]
          Length = 215

 Score =  280 bits (718), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 131/207 (63%), Positives = 174/207 (84%), Gaps = 1/207 (0%)

Query: 10  DSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           D  + ++  LVPMVVEQT+RGER+YDI+SRLLKERI+F++G + D M++LI AQLL LEA
Sbjct: 3   DPYETYMNTLVPMVVEQTSRGERAYDIFSRLLKERIIFLSGPVHDGMSSLIVAQLLHLEA 62

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP KEIS+YINSPGGVVT+G++IYDTMQ+IKP +ST  +GQAASMGSLLL AGEKGMRF
Sbjct: 63  ENPSKEISMYINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLQAGEKGMRF 122

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPN+R+++HQPSGG+ GQA+DI  HAQ+  K+K RLNEIYVK+ G++ E+VE  L+RD+
Sbjct: 123 SLPNSRVMVHQPSGGYQGQATDIMIHAQETQKLKTRLNEIYVKHTGQSLEKVEAALERDN 182

Query: 189 IMSASEACDWGVVDKVLMSRIDIEEKS 215
            MS  EA DWG++D+++ +R  +++ S
Sbjct: 183 FMSPEEAKDWGLIDEIVENRGKMDDPS 209


>gi|163942836|ref|YP_001647720.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           weihenstephanensis KBAB4]
 gi|228993855|ref|ZP_04153759.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           pseudomycoides DSM 12442]
 gi|228999881|ref|ZP_04159453.1| ATP-dependent Clp protease proteolytic subunit [Bacillus mycoides
           Rock3-17]
 gi|229007435|ref|ZP_04165032.1| ATP-dependent Clp protease proteolytic subunit [Bacillus mycoides
           Rock1-4]
 gi|229062796|ref|ZP_04200101.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           AH603]
 gi|229135952|ref|ZP_04264713.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           BDRD-ST196]
 gi|229169852|ref|ZP_04297548.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           AH621]
 gi|163865033|gb|ABY46092.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           weihenstephanensis KBAB4]
 gi|228613566|gb|EEK70695.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           AH621]
 gi|228647494|gb|EEL03568.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           BDRD-ST196]
 gi|228716556|gb|EEL68259.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           AH603]
 gi|228753823|gb|EEM03264.1| ATP-dependent Clp protease proteolytic subunit [Bacillus mycoides
           Rock1-4]
 gi|228759823|gb|EEM08797.1| ATP-dependent Clp protease proteolytic subunit [Bacillus mycoides
           Rock3-17]
 gi|228765911|gb|EEM14561.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           pseudomycoides DSM 12442]
          Length = 193

 Score =  280 bits (718), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 105/193 (54%), Positives = 152/193 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFLE+++P+K+I
Sbjct: 1   MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG +TAGMAIYDTMQFIKP +ST C+G AASMG+ LL+AGEKG R+ALPN+ +
Sbjct: 61  HIYINSPGGSITAGMAIYDTMQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN+I     G+  E +++  DRD+ M+A  A
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILFLREKLNQILADRTGQPLEVLQRDTDRDNFMTAERA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++DK+  +R
Sbjct: 181 LEYGLIDKIFTNR 193


>gi|262198158|ref|YP_003269367.1| ATP-dependent Clp protease proteolytic subunit ClpP [Haliangium
           ochraceum DSM 14365]
 gi|262081505|gb|ACY17474.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Haliangium
           ochraceum DSM 14365]
          Length = 207

 Score =  280 bits (718), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 102/197 (51%), Positives = 155/197 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+EQT+RGER +DI+SRLLKE IVF+   ++D +A +I AQLL LE+E+P+K+I L
Sbjct: 11  MIPTVIEQTHRGERGWDIFSRLLKEGIVFLGTPVDDAVANVIIAQLLHLESEDPEKDIML 70

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+AIYDTMQ+++  ++T CMGQA+SMG+ LL+AG KG RFALP+AR+++
Sbjct: 71  YINSPGGSVTAGLAIYDTMQYLRCDVATICMGQASSMGAFLLAAGAKGKRFALPHARVMI 130

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGFSG A+DI+ +A++++K +  LN +  ++ G+  + + +  +RD+ MSA EAC 
Sbjct: 131 HQPLGGFSGPATDIDIYAREVLKTRETLNRVLAEHTGQPLDRIAEDTERDYFMSADEACA 190

Query: 198 WGVVDKVLMSRIDIEEK 214
           +G++D+V++ +    E+
Sbjct: 191 YGLIDEVIVKKKGQTEE 207


>gi|170751514|ref|YP_001757774.1| endopeptidase Clp [Methylobacterium radiotolerans JCM 2831]
 gi|226706463|sp|B1LW28|CLPP_METRJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|170658036|gb|ACB27091.1| Endopeptidase Clp [Methylobacterium radiotolerans JCM 2831]
          Length = 208

 Score =  280 bits (718), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 131/203 (64%), Positives = 172/203 (84%), Gaps = 1/203 (0%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           +D  DV+   LVPMVVEQ++RGER++DIYSRLL+ERI+F+TG +ED+ A+LI AQLLFLE
Sbjct: 2   RDPIDVYNNALVPMVVEQSSRGERAFDIYSRLLRERIIFLTGPVEDYGASLIVAQLLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AENP+KEIS YINSPGGVVT+G++IYDTMQFI+ P++T C+GQAASMGSLLL+AGE G R
Sbjct: 62  AENPKKEISFYINSPGGVVTSGLSIYDTMQFIRCPVTTLCVGQAASMGSLLLTAGEPGHR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           FALPNARI++HQPSGGF GQA+DI  HA++I  +KRRLNEIYVK+ G+ Y+ +   L+RD
Sbjct: 122 FALPNARIMVHQPSGGFQGQATDILIHAREIEALKRRLNEIYVKHTGRDYDTIHTALERD 181

Query: 188 HIMSASEACDWGVVDKVLMSRID 210
           + M+A  A ++G++D+V+  R +
Sbjct: 182 NFMTADAAKEFGLIDEVIEKRPE 204


>gi|34558484|ref|NP_908299.1| ATP-dependent Clp protease proteolytic subunit [Wolinella
           succinogenes DSM 1740]
 gi|60389700|sp|Q7M7M3|CLPP_WOLSU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|34481778|emb|CAE11199.1| ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT [Wolinella
           succinogenes]
          Length = 195

 Score =  280 bits (718), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 109/192 (56%), Positives = 150/192 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P V+E+T RGERSYDIYSRLLK+RI+ ++G+I D +A+ I +Q+LFLEAE+P+K+I
Sbjct: 1   MNYIPYVIEKTGRGERSYDIYSRLLKDRIIMLSGEINDGVASSIVSQMLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+T+GM+IYDTM ++KP I T C+GQAASMG+ LLS G KG RF+LPN+RI
Sbjct: 61  YLYINSPGGVITSGMSIYDTMNYVKPDICTICIGQAASMGAFLLSCGTKGKRFSLPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DIE  A++I+++K  LN I   N G+  E++ K  DRD  MSA E+
Sbjct: 121 MIHQPLGGAQGQATDIEIQAKEILRLKSILNGILASNTGQPLEKIAKDTDRDFFMSAQES 180

Query: 196 CDWGVVDKVLMS 207
            ++G++D VL  
Sbjct: 181 KEYGLIDNVLEK 192


>gi|145298871|ref|YP_001141712.1| ATP-dependent Clp protease proteolytic subunit [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|226706437|sp|A4SM42|CLPP_AERS4 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|142851643|gb|ABO89964.1| ATP-dependent Clp protease, proteolytic subunit [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 207

 Score =  280 bits (718), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 125/198 (63%), Positives = 157/198 (79%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
           +E     L+PMVVEQT +GERSYDIYSRLLKER++F+TGQ+EDHMA L+ AQLLFLE+EN
Sbjct: 9   TESPRNALIPMVVEQTAKGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESEN 68

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
           P ++IS+YINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+ G KG RF L
Sbjct: 69  PDQDISIYINSPGGAVTAGMSIYDTMQFIKPDVSTVCMGQACSMGAFLLAGGAKGKRFCL 128

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           P+AR+++HQP GGF GQASDI+ HAQ+I+KIK  LNE    + G+    +E+  DRD+ M
Sbjct: 129 PSARVMIHQPLGGFQGQASDIQIHAQEILKIKNTLNERLAFHTGQEMATIERDTDRDNFM 188

Query: 191 SASEACDWGVVDKVLMSR 208
           SA +A  +G+VD +L  R
Sbjct: 189 SADQAVAYGLVDGILSQR 206


>gi|17228733|ref|NP_485281.1| ATP-dependent Clp protease proteolytic subunit [Nostoc sp. PCC
           7120]
 gi|21759071|sp|Q8YXH5|CLPP1_ANASP RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|17130585|dbj|BAB73195.1| ATP-dependent Clp protease proteolytic subunit [Nostoc sp. PCC
           7120]
          Length = 204

 Score =  280 bits (718), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 104/189 (55%), Positives = 146/189 (77%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P+V+EQ+ RGER++DIYSRLL+ERIVF+  Q++ ++A LI AQLLFL+AE+P+K+I LY
Sbjct: 3   IPIVIEQSGRGERAFDIYSRLLRERIVFLGQQVDSNLANLIVAQLLFLDAEDPEKDIYLY 62

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAGM I+DTM+ I+P + T C G AASMG+ LLSAG KG R +LP++RI++H
Sbjct: 63  INSPGGSVTAGMGIFDTMKHIRPDVCTICTGLAASMGAFLLSAGAKGKRMSLPHSRIMIH 122

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA+DIE  A++I+  KRRLN+   ++ G+  E + +  +RD  MS  EA D+
Sbjct: 123 QPLGGAQGQATDIEIQAREILYHKRRLNDYLAEHTGQPIERIAEDTERDFFMSPDEAKDY 182

Query: 199 GVVDKVLMS 207
           G++D+V+  
Sbjct: 183 GLIDQVIDR 191


>gi|78357263|ref|YP_388712.1| ATP-dependent Clp protease proteolytic subunit [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|90101407|sp|Q30Z79|CLPP_DESDG RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|78219668|gb|ABB39017.1| ATP-dependent Clp protease proteolytic subunit ClpP [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 200

 Score =  280 bits (717), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 116/199 (58%), Positives = 161/199 (80%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            +PMV+E T R ER+YDIYSRLLK+RI+ +   ++D++A+LICAQLLFLE+ENP+KEI L
Sbjct: 2   PIPMVIESTGRAERAYDIYSRLLKDRIILLGTPVDDNVASLICAQLLFLESENPEKEIYL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVTAG+AIYDTMQ+I  P++T CMGQAASMG+ LL+AG+ GMRFALPN+RI++
Sbjct: 62  YINSPGGVVTAGLAIYDTMQYISAPVATLCMGQAASMGAFLLAAGQPGMRFALPNSRIMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DI+  A++I+++K RLNEI  ++ G+  E++ +  DRD+ M    A +
Sbjct: 122 HQPMGGAQGQATDIDIQAREILRLKDRLNEILSRHTGQPLEKIVEHTDRDYFMGPENAKN 181

Query: 198 WGVVDKVLMSRIDIEEKSK 216
           +G++D++L SR D+E+  K
Sbjct: 182 FGIIDRILTSRKDVEKDGK 200


>gi|206890175|ref|YP_002248104.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|226706554|sp|B5YI38|CLPP_THEYD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|206742113|gb|ACI21170.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 195

 Score =  280 bits (717), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 108/192 (56%), Positives = 157/192 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + +VP+V+EQT R ER YDIYSRLLK+RI+F+  +I DH+A ++ AQLLFL+ E+P+K+I
Sbjct: 1   MSIVPIVIEQTGRTERVYDIYSRLLKDRIIFIGTEINDHVANVVIAQLLFLQTEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG+V++G+AIYDTMQ++KP I+T+C+GQA+SM  +LL+AG KG RFALP++R+
Sbjct: 61  HIYINSPGGMVSSGLAIYDTMQYVKPDIATYCIGQASSMACVLLAAGTKGKRFALPHSRV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+D+E HA++I+K+K  LN I  K+ G+  E+++K  +RD  MSA EA
Sbjct: 121 MIHQPIGGFYGQATDVEIHAKEILKMKDLLNNILAKHTGQPIEKIQKDTERDFFMSAEEA 180

Query: 196 CDWGVVDKVLMS 207
             +G+VD+V+ S
Sbjct: 181 KLYGIVDEVISS 192


>gi|282883083|ref|ZP_06291683.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Peptoniphilus
           lacrimalis 315-B]
 gi|300813694|ref|ZP_07094016.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Peptoniphilus
           sp. oral taxon 836 str. F0141]
 gi|281297060|gb|EFA89556.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Peptoniphilus
           lacrimalis 315-B]
 gi|300512236|gb|EFK39414.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Peptoniphilus
           sp. oral taxon 836 str. F0141]
          Length = 194

 Score =  280 bits (717), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 119/193 (61%), Positives = 158/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQTNRGERSYDIYSRLLK+RI+F +G++ D MA LI AQLLFLE+E+P K+I
Sbjct: 1   MALVPMVVEQTNRGERSYDIYSRLLKDRIIFASGEVNDTMADLIVAQLLFLESEDPNKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG V+AG+AIYDTMQ+IKP +ST C+G AASMG++LLS+G KG RFALPN+ I
Sbjct: 61  QLYINSPGGSVSAGLAIYDTMQYIKPDVSTICIGMAASMGAILLSSGAKGKRFALPNSDI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  G A+DI+  A+ I+K ++ LN+I  KN G+  E++E+  DRD  + A+EA
Sbjct: 121 MIHQPSGGTQGMATDIQITAEKILKTRKSLNQILAKNTGQKLEKIERDADRDFWLDANEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++DKV+ +R
Sbjct: 181 KEYGLIDKVIENR 193


>gi|157803694|ref|YP_001492243.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
           canadensis str. McKiel]
 gi|166214705|sp|A8EYM5|CLPP_RICCK RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|157784957|gb|ABV73458.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
           canadensis str. McKiel]
          Length = 201

 Score =  280 bits (717), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 125/193 (64%), Positives = 163/193 (84%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP+V+EQT+RGER+YDIYSRLLKERI+FV   +EDHMA LI AQLLFLEAENP+K+I
Sbjct: 1   MSYVPIVIEQTSRGERAYDIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAENPKKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG+AIYDTMQ+IKP ++T C+GQA SMGS LL  GEKGMR++LP++RI
Sbjct: 61  YMYINSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSFLLCGGEKGMRYSLPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG+ GQA+DIE HAQ+ +KIKR LNE+Y K+ G+  + +EK+++RD+ MS  EA
Sbjct: 121 MIHQPSGGYQGQATDIEIHAQETLKIKRLLNELYSKHTGQDVKHIEKSMERDNFMSPEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD ++ SR
Sbjct: 181 KKFGIVDNIISSR 193


>gi|302874445|ref|YP_003843078.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           cellulovorans 743B]
 gi|307690948|ref|ZP_07633394.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           cellulovorans 743B]
 gi|302577302|gb|ADL51314.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           cellulovorans 743B]
          Length = 194

 Score =  280 bits (717), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 115/192 (59%), Positives = 154/192 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQTNRGERSYDIYSRLLK+RIVF+  ++ D  A+++ AQLLFLE+E+P K+I
Sbjct: 1   MALVPMVVEQTNRGERSYDIYSRLLKDRIVFLGEEVNDASASVVVAQLLFLESEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG +TAGMAIYDTM +IKP ++T C+G AASMG+ LL+AG KG RFALPN+ I
Sbjct: 61  SLYINSPGGSITAGMAIYDTMNYIKPDVATICIGMAASMGAFLLAAGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DI  HA+ I+ +K++LN I  +  G+  E +EK  +RD+ M+A +A
Sbjct: 121 MIHQPLGGFKGQATDIGIHAERILLMKKKLNSILSERTGQPLEVIEKDTERDNFMTADKA 180

Query: 196 CDWGVVDKVLMS 207
            D+G++D+V+  
Sbjct: 181 KDYGLIDEVIAK 192


>gi|298490862|ref|YP_003721039.1| ATP-dependent Clp protease proteolytic subunit ClpP ['Nostoc
           azollae' 0708]
 gi|298232780|gb|ADI63916.1| ATP-dependent Clp protease, proteolytic subunit ClpP ['Nostoc
           azollae' 0708]
          Length = 201

 Score =  280 bits (717), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 100/190 (52%), Positives = 145/190 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQ+ RGER++DIYSRLL+ERI+F+  Q++  +A LI AQLLFL+AE+P+K+I +
Sbjct: 1   MIPIVIEQSGRGERAFDIYSRLLRERIIFLGQQVDSGLANLIVAQLLFLDAEDPEKDIYM 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM I+DTM+ I+P + T C G AASMG+ LLSAG KG R +LP++RI++
Sbjct: 61  YINSPGGSVTAGMGIFDTMKNIRPDVCTICTGLAASMGAFLLSAGTKGKRMSLPHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+  KR+LN    ++ G+  E + +  +RD  MS  EA +
Sbjct: 121 HQPLGGAQGQATDIEIQAREILYHKRKLNGYLAQHTGQPLERIAEDTERDFFMSPEEAQE 180

Query: 198 WGVVDKVLMS 207
           +G++D+V+  
Sbjct: 181 YGLIDQVIDR 190


>gi|319955770|ref|YP_004167033.1| ATP-dependent clp protease proteolytic subunit clpp [Nitratifractor
           salsuginis DSM 16511]
 gi|319418174|gb|ADV45284.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nitratifractor
           salsuginis DSM 16511]
          Length = 196

 Score =  280 bits (717), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 106/192 (55%), Positives = 152/192 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P V+EQT RGERSYDIYSRLLK+RI+ ++G++ D +A+ I AQLLFLEA++P K+I
Sbjct: 1   MSYIPYVIEQTGRGERSYDIYSRLLKDRIIMLSGEVNDAVASSIVAQLLFLEAQDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGGV+T+G +IYDTM +IKP +ST C+GQAASMG+ LL+ G +G R+ALP++RI
Sbjct: 61  YFYINSPGGVITSGFSIYDTMNYIKPDVSTICIGQAASMGAFLLACGAEGKRYALPSSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI   A++I+++K  LN+I  +  GK+ +++EK  +RD+ MSA EA
Sbjct: 121 MIHQPLGGAQGQATDIAIQAKEILRMKTYLNKILAEKTGKSVKKIEKDTERDYFMSAEEA 180

Query: 196 CDWGVVDKVLMS 207
            ++G++DKVL  
Sbjct: 181 QEYGLIDKVLTK 192


>gi|218440358|ref|YP_002378687.1| ATP-dependent Clp protease proteolytic subunit ClpP [Cyanothece sp.
           PCC 7424]
 gi|218173086|gb|ACK71819.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
           sp. PCC 7424]
          Length = 203

 Score =  280 bits (717), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 96/192 (50%), Positives = 140/192 (72%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+E + RGER++DIYSRLL++RIVF+  ++ + +A  I AQLLFLE+E+P K+I L
Sbjct: 1   MIPTVIESSGRGERAFDIYSRLLRDRIVFLGQEVTNDLANTIVAQLLFLESEDPDKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG+ I+DTM  I+P + T C+G AASMG+ LL AG K  R +LPN+RI++
Sbjct: 61  YINSPGGSVSAGLGIFDTMNQIRPDVCTICIGLAASMGAFLLCAGAKDKRMSLPNSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+ +K  LN+      G+  E++ +  +RD  MSA EA +
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYLKGLLNQHLASRTGQPLEKIAEDTERDFFMSAEEAQE 180

Query: 198 WGVVDKVLMSRI 209
           +G++D+V+  R 
Sbjct: 181 YGLIDQVINRRP 192


>gi|302386739|ref|YP_003822561.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           saccharolyticum WM1]
 gi|302197367|gb|ADL04938.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           saccharolyticum WM1]
          Length = 195

 Score =  280 bits (717), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 115/192 (59%), Positives = 152/192 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+E T++GERSYDIYSRLLKERI+F+  ++ D  A+L+ AQLLFLEAE+P K+I
Sbjct: 1   MSLVPYVIESTSKGERSYDIYSRLLKERIIFLGEEVSDVSASLVVAQLLFLEAEDPNKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGG VTAGMAIYDTM +IK  +ST CMG AASMG+ LL+ G KG RFALPNA +
Sbjct: 61  NLYINSPGGSVTAGMAIYDTMNYIKCDVSTVCMGMAASMGAFLLAGGAKGKRFALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I   A++I+KIK+RLNEI   N G+ YE +E+  +RD+ M+A EA
Sbjct: 121 MIHQPSGGAKGQATEIRIVAENILKIKKRLNEILSANTGQPYEVIERDTERDNYMNAEEA 180

Query: 196 CDWGVVDKVLMS 207
             +G++D ++ S
Sbjct: 181 KAYGLIDDIIYS 192


>gi|188527362|ref|YP_001910049.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           Shi470]
 gi|217034159|ref|ZP_03439579.1| hypothetical protein HP9810_868g52 [Helicobacter pylori 98-10]
 gi|308182950|ref|YP_003927077.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           PeCan4]
 gi|226706455|sp|B2UT37|CLPP_HELPS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|188143602|gb|ACD48019.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           Shi470]
 gi|216943443|gb|EEC22899.1| hypothetical protein HP9810_868g52 [Helicobacter pylori 98-10]
 gi|261839391|gb|ACX99156.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           52]
 gi|297379992|gb|ADI34879.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Helicobacter
           pylori v225d]
 gi|308062114|gb|ADO04002.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           Cuz20]
 gi|308063422|gb|ADO05309.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           Sat464]
 gi|308065135|gb|ADO07027.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           PeCan4]
 gi|315586542|gb|ADU40923.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           35A]
 gi|317177376|dbj|BAJ55165.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           F16]
 gi|317180557|dbj|BAJ58343.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           F32]
 gi|317182104|dbj|BAJ59888.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           F57]
          Length = 195

 Score =  280 bits (717), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 113/195 (57%), Positives = 155/195 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +G +P V+E T+RGERSYDIYSRLLK+RIV ++G+I D +A+ I AQLLFLEAE+P+K+I
Sbjct: 1   MGYIPYVIENTDRGERSYDIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+T+G++IYDTM FI+P +ST C+GQAASMG+ LLS G KG RF+LP++RI
Sbjct: 61  GLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDIE  + +I+++K  +N I  +N G++ E++ K  DRD  MSA EA
Sbjct: 121 MIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEA 180

Query: 196 CDWGVVDKVLMSRID 210
            ++G++DKVL   + 
Sbjct: 181 KEYGLIDKVLEKNVK 195


>gi|222055723|ref|YP_002538085.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacter sp.
           FRC-32]
 gi|254763790|sp|B9M0Y1|CLPP_GEOSF RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|221565012|gb|ACM20984.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacter sp.
           FRC-32]
          Length = 199

 Score =  280 bits (717), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 117/190 (61%), Positives = 157/190 (82%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+VVEQT RGERSYDIYSRLLK+RI+F+ G I+D ++ L+ AQLLFLEAE+P K+I L
Sbjct: 2   LVPIVVEQTGRGERSYDIYSRLLKDRIIFLGGAIDDTVSNLVIAQLLFLEAEDPDKDIHL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVTAGMAIYDTM++IK P+ST C+GQAASMG+ LLS GEKG RF+L N+RI++
Sbjct: 62  YINSPGGVVTAGMAIYDTMRYIKAPVSTICVGQAASMGAFLLSGGEKGKRFSLANSRIMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQA+DI  HAQ+I+++K++LNE+  ++ G+T E++E   +RD+ MS  +A  
Sbjct: 122 HQPLGGFQGQATDIHIHAQEILRMKKKLNELLAEHSGQTVEKIEADTERDYFMSGEDAKT 181

Query: 198 WGVVDKVLMS 207
           +G++D ++  
Sbjct: 182 YGIIDSIITR 191


>gi|69249001|ref|ZP_00604844.1| Peptidase S14, ClpP [Enterococcus faecium DO]
 gi|227550370|ref|ZP_03980419.1| endopeptidase Clp [Enterococcus faecium TX1330]
 gi|257879589|ref|ZP_05659242.1| peptidase S14 [Enterococcus faecium 1,230,933]
 gi|257882608|ref|ZP_05662261.1| peptidase S14 [Enterococcus faecium 1,231,502]
 gi|257885031|ref|ZP_05664684.1| peptidase S14 [Enterococcus faecium 1,231,501]
 gi|257888403|ref|ZP_05668056.1| peptidase S14 [Enterococcus faecium 1,141,733]
 gi|257890257|ref|ZP_05669910.1| peptidase S14 [Enterococcus faecium 1,231,410]
 gi|257893441|ref|ZP_05673094.1| peptidase S14 [Enterococcus faecium 1,231,408]
 gi|257897223|ref|ZP_05676876.1| peptidase S14 [Enterococcus faecium Com12]
 gi|257899224|ref|ZP_05678877.1| peptidase S14 [Enterococcus faecium Com15]
 gi|258616800|ref|ZP_05714570.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecium DO]
 gi|260559746|ref|ZP_05831926.1| peptidase S14 [Enterococcus faecium C68]
 gi|261207321|ref|ZP_05922008.1| peptidase S14 [Enterococcus faecium TC 6]
 gi|289566520|ref|ZP_06446943.1| Clp protease [Enterococcus faecium D344SRF]
 gi|293377995|ref|ZP_06624173.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium PC4.1]
 gi|293557243|ref|ZP_06675791.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium E1039]
 gi|293559757|ref|ZP_06676278.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium E1162]
 gi|293567607|ref|ZP_06678951.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium E1071]
 gi|293570370|ref|ZP_06681427.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium E980]
 gi|294616541|ref|ZP_06696319.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium E1636]
 gi|294618382|ref|ZP_06697960.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium E1679]
 gi|294623239|ref|ZP_06702110.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium U0317]
 gi|314938917|ref|ZP_07846184.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium TX0133a04]
 gi|314943860|ref|ZP_07850593.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium TX0133C]
 gi|314948100|ref|ZP_07851501.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium TX0082]
 gi|314951634|ref|ZP_07854679.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium TX0133A]
 gi|314993860|ref|ZP_07859194.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium TX0133B]
 gi|314996702|ref|ZP_07861725.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium TX0133a01]
 gi|68194308|gb|EAN08823.1| Peptidase S14, ClpP [Enterococcus faecium DO]
 gi|227180509|gb|EEI61481.1| endopeptidase Clp [Enterococcus faecium TX1330]
 gi|257813817|gb|EEV42575.1| peptidase S14 [Enterococcus faecium 1,230,933]
 gi|257818266|gb|EEV45594.1| peptidase S14 [Enterococcus faecium 1,231,502]
 gi|257820883|gb|EEV48017.1| peptidase S14 [Enterococcus faecium 1,231,501]
 gi|257824457|gb|EEV51389.1| peptidase S14 [Enterococcus faecium 1,141,733]
 gi|257826617|gb|EEV53243.1| peptidase S14 [Enterococcus faecium 1,231,410]
 gi|257829820|gb|EEV56427.1| peptidase S14 [Enterococcus faecium 1,231,408]
 gi|257833788|gb|EEV60209.1| peptidase S14 [Enterococcus faecium Com12]
 gi|257837136|gb|EEV62210.1| peptidase S14 [Enterococcus faecium Com15]
 gi|260074414|gb|EEW62736.1| peptidase S14 [Enterococcus faecium C68]
 gi|260078381|gb|EEW66085.1| peptidase S14 [Enterococcus faecium TC 6]
 gi|289161674|gb|EFD09551.1| Clp protease [Enterococcus faecium D344SRF]
 gi|291589708|gb|EFF21512.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium E1071]
 gi|291590588|gb|EFF22319.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium E1636]
 gi|291595359|gb|EFF26674.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium E1679]
 gi|291597346|gb|EFF28526.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium U0317]
 gi|291600607|gb|EFF30911.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium E1039]
 gi|291606305|gb|EFF35718.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium E1162]
 gi|291609548|gb|EFF38813.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium E980]
 gi|292643360|gb|EFF61492.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium PC4.1]
 gi|313589140|gb|EFR67985.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium TX0133a01]
 gi|313591670|gb|EFR70515.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium TX0133B]
 gi|313596230|gb|EFR75075.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium TX0133A]
 gi|313597478|gb|EFR76323.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium TX0133C]
 gi|313641791|gb|EFS06371.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium TX0133a04]
 gi|313645436|gb|EFS10016.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecium TX0082]
          Length = 197

 Score =  280 bits (717), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 107/192 (55%), Positives = 148/192 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQ++RGER+YDIYSRLLK+RI+ ++GQ+ D +A  I AQLLFL+A++ +K+I
Sbjct: 1   MNLIPTVIEQSSRGERAYDIYSRLLKDRIIMLSGQVTDDLANSIIAQLLFLDAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMAIYDTM F+K  + T  MG AASMGS LL+AG KG RFALPNA I
Sbjct: 61  YLYINSPGGSVTAGMAIYDTMNFVKADVQTIVMGMAASMGSFLLTAGTKGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I++ + RLN+I  +  G+  E +EK  DRD+ M+A +A
Sbjct: 121 MIHQPLGGAQGQATEIEIAARHILQTRERLNKILAERTGQPLEVIEKDTDRDNYMTAEQA 180

Query: 196 CDWGVVDKVLMS 207
             +G++D+V+ +
Sbjct: 181 KAYGLIDEVMEN 192


>gi|313892932|ref|ZP_07826509.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442285|gb|EFR60700.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Veillonella sp. oral taxon 158 str. F0412]
          Length = 197

 Score =  280 bits (717), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 117/196 (59%), Positives = 157/196 (80%), Gaps = 1/196 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP+VVEQ+ RGERSYDIYSRLLK+RI+F+ G I+D++A  + AQ+LFLEAE+P K+I LY
Sbjct: 3   VPIVVEQSERGERSYDIYSRLLKDRIIFLGGPIDDNVANAVIAQMLFLEAEDPDKDIHLY 62

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGVVTAGMAIYDTMQ+IKP +ST C+G AASMG++LL+AG KG R+ALP+AR+++H
Sbjct: 63  INSPGGVVTAGMAIYDTMQYIKPDVSTICVGSAASMGAVLLTAGTKGKRYALPHARVMIH 122

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQAS+IE HA++I++++  LN I     G+  E V +  DRD+ MSA +A ++
Sbjct: 123 QPLGGVQGQASEIEIHAREILRMREELNGILASRSGQDIEVVARDTDRDNFMSAQDAVEY 182

Query: 199 GVVDKVLMSRIDIEEK 214
           G++D+VL  R  +E K
Sbjct: 183 GLIDEVLT-REPVESK 197


>gi|304311290|ref|YP_003810888.1| ATP-dependent Clp protease proteolytic subunit [gamma
           proteobacterium HdN1]
 gi|301797023|emb|CBL45236.1| ATP-dependent Clp protease proteolytic subunit [gamma
           proteobacterium HdN1]
          Length = 189

 Score =  280 bits (717), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 124/189 (65%), Positives = 157/189 (83%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MV+EQT RGERS+DIYSRLLKER++F+ GQ+EDHMA LI AQLLFLE+ENP K+I LYIN
Sbjct: 1   MVIEQTARGERSFDIYSRLLKERLIFMVGQVEDHMANLIVAQLLFLESENPDKDIHLYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGG VTAGM+IYDTMQFIK  +ST C+GQA SMG+ LL+AG  G R+ALPN+R+++HQP
Sbjct: 61  SPGGSVTAGMSIYDTMQFIKADVSTICVGQACSMGAFLLAAGAPGKRYALPNSRVMIHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            GGF GQASDIE HA++I+ +KRRLNE+  K+ G+  E+VE   DRD+ MSA +A ++G+
Sbjct: 121 LGGFQGQASDIEIHAREIITMKRRLNEMLAKHSGQPIEKVEGDTDRDNFMSAFDAKEYGL 180

Query: 201 VDKVLMSRI 209
           VD+VL  R+
Sbjct: 181 VDQVLEKRV 189


>gi|30265176|ref|NP_847553.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
           str. Ames]
 gi|47530690|ref|YP_022039.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49187986|ref|YP_031239.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
           str. Sterne]
 gi|65317122|ref|ZP_00390081.1| COG0740: Protease subunit of ATP-dependent Clp proteases [Bacillus
           anthracis str. A2012]
 gi|165869926|ref|ZP_02214583.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0488]
 gi|167635263|ref|ZP_02393578.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0442]
 gi|167640458|ref|ZP_02398721.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0193]
 gi|170687959|ref|ZP_02879172.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0465]
 gi|170707727|ref|ZP_02898178.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0389]
 gi|177652976|ref|ZP_02935303.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0174]
 gi|190567666|ref|ZP_03020578.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis Tsiankovskii-I]
 gi|227817909|ref|YP_002817918.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. CDC 684]
 gi|229599890|ref|YP_002869370.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0248]
 gi|254686423|ref|ZP_05150282.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
           str. CNEVA-9066]
 gi|254735629|ref|ZP_05193336.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
           str. Western North America USA6153]
 gi|254744284|ref|ZP_05201964.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
           str. Kruger B]
 gi|254755582|ref|ZP_05207615.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
           str. Vollum]
 gi|254757037|ref|ZP_05209065.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
           str. Australia 94]
 gi|67460531|sp|Q81X63|CLPP2_BACAN RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|30259853|gb|AAP29039.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. Ames]
 gi|47505838|gb|AAT34514.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49181913|gb|AAT57289.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. Sterne]
 gi|164714249|gb|EDR19769.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0488]
 gi|167511501|gb|EDR86884.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0193]
 gi|167529306|gb|EDR92058.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0442]
 gi|170127284|gb|EDS96160.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0389]
 gi|170668068|gb|EDT18818.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0465]
 gi|172081751|gb|EDT66821.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0174]
 gi|190561082|gb|EDV15055.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis Tsiankovskii-I]
 gi|227003920|gb|ACP13663.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. CDC 684]
 gi|229264298|gb|ACQ45935.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0248]
          Length = 193

 Score =  280 bits (717), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 105/193 (54%), Positives = 152/193 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFLE+++P+K+I
Sbjct: 1   MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG +TAGMAIYDTMQFIKP +ST C+G AASMG+ LL+AGEKG R+ALPN+  
Sbjct: 61  HIYINSPGGSITAGMAIYDTMQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEA 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN+I     G+  E +++  DRD+ M+A +A
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILFLREKLNQILADRTGQPLEVLQRDTDRDNFMTAEKA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++DK+  +R
Sbjct: 181 LEYGLIDKIFTNR 193


>gi|114327971|ref|YP_745128.1| ATP-dependent endopeptidase Clp proteolytic subunit clpP
           [Granulibacter bethesdensis CGDNIH1]
 gi|114316145|gb|ABI62205.1| ATP-dependent endopeptidase clp proteolytic subunit clpP
           [Granulibacter bethesdensis CGDNIH1]
          Length = 248

 Score =  280 bits (717), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 132/208 (63%), Positives = 169/208 (81%), Gaps = 1/208 (0%)

Query: 3   FEGCAKKDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICA 61
                 +D  +V+   LVPMVVEQT RGERS+DIYSRLLKERI+F+TG + D ++ LICA
Sbjct: 31  IRNMRDRDPVEVYSNTLVPMVVEQTARGERSFDIYSRLLKERIIFLTGAVYDQVSALICA 90

Query: 62  QLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSA 121
           QLLFLE+ENPQKEIS YINSPGGVV+AG+AIYDTMQ+I+ P+ST C+GQAASMGSLLL A
Sbjct: 91  QLLFLESENPQKEISFYINSPGGVVSAGLAIYDTMQYIRSPVSTVCIGQAASMGSLLLCA 150

Query: 122 GEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVE 181
           GEK  RFALPNAR+++HQPSGG  GQA+DIE  A++I+ +++RLNEIY ++ G++ E +E
Sbjct: 151 GEKDKRFALPNARVMVHQPSGGAQGQATDIEIQAREILTLRKRLNEIYNRHTGQSIEAIE 210

Query: 182 KTLDRDHIMSASEACDWGVVDKVLMSRI 209
           + L+RD  MSA EA D+G+VD+V+  R 
Sbjct: 211 RKLERDTYMSAEEARDFGLVDQVVERRP 238


>gi|238917377|ref|YP_002930894.1| ATP-dependent Clp protease, protease subunit [Eubacterium eligens
           ATCC 27750]
 gi|259585953|sp|C4Z1T6|CLPP_EUBE2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|238872737|gb|ACR72447.1| ATP-dependent Clp protease, protease subunit [Eubacterium eligens
           ATCC 27750]
          Length = 193

 Score =  280 bits (717), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 108/193 (55%), Positives = 144/193 (74%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP V+EQ +RGERSYDIYSRLLK+RI+F+  ++ D  A L+ AQ+LFLEAE+P K+I
Sbjct: 1   MSFVPYVIEQNSRGERSYDIYSRLLKDRIIFLGEEVTDVSANLVVAQMLFLEAEDPSKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG V+AG AIYDTMQ+IK  +ST C+G AASMG+ LLS G KG R ALPNA I
Sbjct: 61  HFYINSPGGSVSAGFAIYDTMQYIKCDVSTICIGMAASMGAFLLSGGAKGKRLALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQ ++I   A++I+K + +LNEI   N GK+ EE+ +  +RD+ M+A EA
Sbjct: 121 MIHQPSGGARGQETEIRIVAENILKTRNKLNEILAANTGKSVEEISRDTERDNYMTAQEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D V+  R
Sbjct: 181 VAYGLIDSVVEKR 193


>gi|257870013|ref|ZP_05649666.1| peptidase S14 [Enterococcus gallinarum EG2]
 gi|257804177|gb|EEV32999.1| peptidase S14 [Enterococcus gallinarum EG2]
          Length = 196

 Score =  280 bits (717), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 109/192 (56%), Positives = 150/192 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQ++RGER+YDIYSRLLK+RI+ ++GQ+ D +A  I AQLLFL+A++ +K+I
Sbjct: 1   MNLIPTVIEQSSRGERAYDIYSRLLKDRIIMLSGQVTDDLANSIIAQLLFLDAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG+AI+DTM FIK  + T  MG AASMGS LL+AGEKG RFALPNA I
Sbjct: 61  YLYINSPGGSVTAGLAIFDTMNFIKADVQTIVMGMAASMGSFLLTAGEKGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I++ + RLN+I  +  G+  E +EK  DRD+ M+A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAARHILQTRERLNKILSERTGQPIEVIEKDTDRDNFMTAQEA 180

Query: 196 CDWGVVDKVLMS 207
            D+G++D+++ S
Sbjct: 181 KDYGLIDEIMES 192


>gi|218514228|ref|ZP_03511068.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli
           8C-3]
          Length = 201

 Score =  280 bits (716), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 159/197 (80%), Positives = 182/197 (92%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQTNRGERSYDIYSRLLKERI+F+TG +EDHMATL+CAQLLFLEAENP+KEI
Sbjct: 1   MALVPMVVEQTNRGERSYDIYSRLLKERIIFLTGAVEDHMATLVCAQLLFLEAENPKKEI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGGVVTAGMAIYDTMQFIKP +ST C+GQAASMGSLLL+AG K MRFA PN+RI
Sbjct: 61  ALYINSPGGVVTAGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLAAGHKDMRFATPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGGF GQASDIERHA+DI+K+KRRLNE+YVK+ G+TYEEVEKTLDRDH M A EA
Sbjct: 121 MVHQPSGGFQGQASDIERHARDILKMKRRLNEVYVKHTGRTYEEVEKTLDRDHFMDADEA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
             WGV+DKVL SR+++E
Sbjct: 181 QGWGVIDKVLTSRLEME 197


>gi|15616126|ref|NP_244431.1| ATP-dependent Clp protease proteolytic subunit [Bacillus halodurans
           C-125]
 gi|11386690|sp|Q9K709|CLPP1_BACHD RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|10176188|dbj|BAB07283.1| ATP-dependent Clp protease proteolytic subunit [Bacillus halodurans
           C-125]
          Length = 194

 Score =  280 bits (716), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 111/192 (57%), Positives = 152/192 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RI+ +   I+D++A  I AQLLFL+AE+P K+I
Sbjct: 1   MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGTAIDDNVANSIVAQLLFLQAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG +TAGMAIYDTMQ+IKP +ST C+G AASMG+ LL+AG KG RFALPN+ +
Sbjct: 61  SLYINSPGGSITAGMAIYDTMQYIKPNVSTICIGMAASMGAFLLAAGAKGKRFALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDIE H + I++++  LN I  +  G+  E++ K  DRD+ M+A +A
Sbjct: 121 MIHQPLGGTRGQASDIEIHTRRILEMRETLNRILAERTGQPLEQIAKDTDRDNFMTAEKA 180

Query: 196 CDWGVVDKVLMS 207
            ++G++DKV+ +
Sbjct: 181 REYGLIDKVIET 192


>gi|254410742|ref|ZP_05024520.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Microcoleus
           chthonoplastes PCC 7420]
 gi|196182097|gb|EDX77083.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Microcoleus
           chthonoplastes PCC 7420]
          Length = 202

 Score =  280 bits (716), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 104/192 (54%), Positives = 146/192 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+EQ+ RGER++DIYSRLL+ERIVF+  Q++  +A LI AQLLFLEA++P+K+I L
Sbjct: 1   MIPTVIEQSGRGERAFDIYSRLLRERIVFLGQQVDSDLANLIVAQLLFLEADDPEKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM IYDTM  I+P + T C+G AASMG+ LLSAG KG R +LP++RI++
Sbjct: 61  YINSPGGSVTAGMGIYDTMNQIRPDVCTICVGLAASMGAFLLSAGAKGKRMSLPHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I+  K+RLN++  ++  +  + + +  +RD  MSA EA D
Sbjct: 121 HQPLGGAQGQASDIEIQAKEILYHKQRLNQLLAEHTDQPLDRIAEDTERDFFMSAEEAKD 180

Query: 198 WGVVDKVLMSRI 209
           + ++D+V+  R 
Sbjct: 181 YRLIDQVINRRP 192


>gi|78211620|ref|YP_380399.1| ATP-dependent Clp protease proteolytic subunit ClpP [Synechococcus
           sp. CC9605]
 gi|260436691|ref|ZP_05790661.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. WH 8109]
 gi|78196079|gb|ABB33844.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. CC9605]
 gi|260414565|gb|EEX07861.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. WH 8109]
          Length = 224

 Score =  280 bits (716), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 102/194 (52%), Positives = 146/194 (75%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G +P VVEQ+ RG+R++DIYSRLL+ERI+F+   ++D +A  + AQ+LFLEAE+P+K+I 
Sbjct: 24  GPLPTVVEQSGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDIQ 83

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VTAG+AIYDTMQ + P + T C G AASMG+ LLS G KG R ALPNARI+
Sbjct: 84  IYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIM 143

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA DIE  A++I+ +K  LN +  ++ G+  +++ +  DRD+ +S +EA 
Sbjct: 144 IHQPLGGAQGQAVDIEIQAKEILYLKETLNGLMAEHTGQPLDKISEDTDRDYFLSPAEAV 203

Query: 197 DWGVVDKVLMSRID 210
           ++G++D+V+ S  D
Sbjct: 204 EYGLIDRVVDSSGD 217


>gi|262369923|ref|ZP_06063250.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter
           johnsonii SH046]
 gi|262314962|gb|EEY96002.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter
           johnsonii SH046]
          Length = 201

 Score =  280 bits (716), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 124/193 (64%), Positives = 159/193 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQ++RGERS+DIYSRLL+ER++F+TG++ED+MA LI AQ+LFLEAENP K+I 
Sbjct: 9   ALVPMVVEQSSRGERSFDIYSRLLRERVIFMTGEVEDNMANLIVAQMLFLEAENPDKDIH 68

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGMAIYDTMQFIKP + T+CMGQAASMG+ LL++G KG R+ L NAR++
Sbjct: 69  LYINSPGGSVTAGMAIYDTMQFIKPDVVTYCMGQAASMGAFLLNSGAKGKRYCLENARVM 128

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+ IK RLN +  ++ G+ YE V +  DRD+ M+A  A 
Sbjct: 129 IHQPLGGFRGQASDIEIHAREILFIKERLNRLMAEHSGQDYETVARDTDRDNFMTAQAAK 188

Query: 197 DWGVVDKVLMSRI 209
           ++G+VD+VL  R 
Sbjct: 189 EYGLVDEVLSKRP 201


>gi|126668931|ref|ZP_01739872.1| ATP-dependent Clp protease proteolytic subunit [Marinobacter sp.
           ELB17]
 gi|126626594|gb|EAZ97250.1| ATP-dependent Clp protease proteolytic subunit [Marinobacter sp.
           ELB17]
          Length = 211

 Score =  280 bits (716), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 113/194 (58%), Positives = 150/194 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
             LVPMV+EQT RGERS+DIYSRLLKER++F+ G +EDHMA L+ AQLLFLE+ENP K+I
Sbjct: 15  AALVPMVIEQTARGERSFDIYSRLLKERVIFMVGPVEDHMANLVVAQLLFLESENPDKDI 74

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG V+AGM+IYDTMQFIKP ++T C+GQAASMG+ LL+ G  G R  LPN+R+
Sbjct: 75  HLYINSPGGSVSAGMSIYDTMQFIKPDVATLCVGQAASMGAFLLAGGAAGKRACLPNSRV 134

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG+ GQA+DIE H ++I+KI+  LN I   + G+  E + +  DRD+ M  ++A
Sbjct: 135 MIHQPLGGYQGQATDIEIHTREILKIRHTLNSILAHHTGQDLETISRDTDRDNFMDPTQA 194

Query: 196 CDWGVVDKVLMSRI 209
             +G++D VL  R+
Sbjct: 195 KAYGLIDSVLDKRV 208


>gi|284053359|ref|ZP_06383569.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Arthrospira
           platensis str. Paraca]
 gi|291567407|dbj|BAI89679.1| ATP-dependent Clp protease proteolytic subunit [Arthrospira
           platensis NIES-39]
          Length = 200

 Score =  280 bits (716), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 101/192 (52%), Positives = 146/192 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+EQ+ RGER++DIYSRLL++RIVF+  Q+   +A LI AQLLFL+AE+P+K+I L
Sbjct: 1   MIPTVIEQSGRGERAFDIYSRLLRDRIVFLGTQVNSDVANLIVAQLLFLDAEDPEKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+ I+DTM  I+P + T C+G AASMG+ LLSAG KG R++LP++RI++
Sbjct: 61  YINSPGGGVNAGLGIFDTMNHIRPDVCTVCLGLAASMGAFLLSAGAKGKRYSLPHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+ +KR+LNE   K+  +    +E+  +RD  MSA +A +
Sbjct: 121 HQPLGGAQGQATDIEIQAREILYLKRQLNENLAKHTSQPLSRIEEDTERDFFMSAEDAVN 180

Query: 198 WGVVDKVLMSRI 209
           +G++D+V+  R 
Sbjct: 181 YGLIDQVISRRP 192


>gi|209885039|ref|YP_002288896.1| Clp protease [Oligotropha carboxidovorans OM5]
 gi|226706464|sp|B6JGU7|CLPP_OLICO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|209873235|gb|ACI93031.1| Clp protease [Oligotropha carboxidovorans OM5]
          Length = 210

 Score =  280 bits (716), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 139/204 (68%), Positives = 178/204 (87%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  + ++ LVPMVVEQTNRGER+YDI+SRLLKERI+FVTG +ED M+TLI AQLLFLEA
Sbjct: 2   RDPVETYMNLVPMVVEQTNRGERAYDIFSRLLKERIIFVTGPVEDGMSTLIVAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEIS+YINSPGGVVT+G+AIYDTMQFI+PP+ST C GQAASMGSLLL+AGEK MRF
Sbjct: 62  ENPKKEISMYINSPGGVVTSGLAIYDTMQFIRPPVSTLCTGQAASMGSLLLAAGEKDMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPN+RI++HQPSGGF GQA+DI  HAQ+I+ +K+RLNEIYVK+ G++Y+ +E  L+RD+
Sbjct: 122 SLPNSRIMVHQPSGGFQGQATDIMLHAQEILNLKKRLNEIYVKHTGQSYQAIEDALERDN 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIE 212
            ++A +A D+G+VDKV+  R +  
Sbjct: 182 FLTAEKARDFGIVDKVIDKRPEDP 205


>gi|46198558|ref|YP_004225.1| ATP-dependent Clp protease proteolytic subunit [Thermus
           thermophilus HB27]
 gi|46196180|gb|AAS80598.1| ATP-dependent clp protease proteolytic subunit [Thermus
           thermophilus HB27]
          Length = 212

 Score =  280 bits (716), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 107/190 (56%), Positives = 149/190 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+EQT RGER YDIYSRLLK+RI+F+   I+  +A ++ AQLLFL+A+NP +EI L
Sbjct: 20  VIPYVIEQTARGERVYDIYSRLLKDRIIFLGTPIDAQVANVVVAQLLFLDAQNPNQEIKL 79

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+AIYDTMQF++ P+ST  +G AASM +++L+AGEKG R+ALP+A++++
Sbjct: 80  YINSPGGEVDAGLAIYDTMQFVRAPVSTIVIGMAASMAAVILAAGEKGRRYALPHAKVMI 139

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  G ASDI   AQ+I+K K+ LNEI  K+ G+  E+VEK  DRD+ +SA EA +
Sbjct: 140 HQPWGGVRGTASDIAIQAQEILKAKKLLNEILAKHTGQPLEKVEKDTDRDYYLSAQEALE 199

Query: 198 WGVVDKVLMS 207
           +G++D+V+  
Sbjct: 200 YGLIDQVVTR 209


>gi|256369536|ref|YP_003107046.1| ATP-dependent Clp protease proteolytic subunit [Brucella microti
           CCM 4915]
 gi|255999698|gb|ACU48097.1| ATP-dependent Clp protease proteolytic subunit [Brucella microti
           CCM 4915]
          Length = 209

 Score =  280 bits (716), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 148/208 (71%), Positives = 182/208 (87%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  +  + LVPMVVEQTNRGER+YDI+SRLLKERI+FV G +ED M+ L+CAQLLFLEA
Sbjct: 2   RDPIETVMNLVPMVVEQTNRGERAYDIFSRLLKERIIFVNGPVEDGMSMLVCAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI++YINSPGGVVT+GMAIYDTMQFI+PP+ST CMGQAASMGSLLL+AG  G R+
Sbjct: 62  ENPKKEINMYINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGATGHRY 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           ALPNARI++HQPSGGF GQASDIERHAQDI+K+KRRLNEIYVK+ G+ Y+ +E TLDRDH
Sbjct: 122 ALPNARIMVHQPSGGFQGQASDIERHAQDIIKMKRRLNEIYVKHTGRDYDTIECTLDRDH 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIEEKSK 216
            M+A EA ++G++DKV+ +R    ++SK
Sbjct: 182 FMTAQEALEFGLIDKVVEARDVSADESK 209


>gi|262373455|ref|ZP_06066733.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter
           junii SH205]
 gi|262311208|gb|EEY92294.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acinetobacter
           junii SH205]
          Length = 201

 Score =  280 bits (716), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 124/193 (64%), Positives = 159/193 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVP+VVEQ++RGERS+DIYSRLL+ER++F+TG++ED+MA LI AQ+LFLEAENP+K+I 
Sbjct: 9   ALVPVVVEQSSRGERSFDIYSRLLRERVIFLTGEVEDNMANLIVAQMLFLEAENPEKDIH 68

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGMAIYDTMQFIKP + T+CMGQAASMG+ LL+AG KG R+ L NAR++
Sbjct: 69  LYINSPGGSVTAGMAIYDTMQFIKPDVVTYCMGQAASMGAFLLNAGAKGKRYCLENARVM 128

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+ IK RLN +  ++ G+ YE V +  DRD+ M+A  A 
Sbjct: 129 IHQPLGGFRGQASDIEIHAREILFIKERLNRLMAQHSGQDYETVARDTDRDNFMTAEAAK 188

Query: 197 DWGVVDKVLMSRI 209
            +G+VD+VL  R 
Sbjct: 189 QYGLVDQVLSKRP 201


>gi|300865787|ref|ZP_07110541.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oscillatoria
           sp. PCC 6506]
 gi|300336200|emb|CBN55696.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oscillatoria
           sp. PCC 6506]
          Length = 203

 Score =  280 bits (716), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 107/192 (55%), Positives = 145/192 (75%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+EQ+ RGER++DIYSRLL++RIVF+  Q+   +A LI AQLLFL+AE+P+K+I L
Sbjct: 1   MIPTVIEQSGRGERAFDIYSRLLRDRIVFLGQQVTSDLANLIVAQLLFLDAEDPEKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM I+DTM  I+P +ST C+G AASMG+ LLSAG KG R  LP++RI++
Sbjct: 61  YINSPGGSVTAGMGIFDTMNHIRPEVSTICLGLAASMGAFLLSAGAKGKRMTLPHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+  KRRLNE    + G+    +E+  +RD  MSA+EA +
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYHKRRLNEHLAAHTGQPLSRIEEDTERDFFMSAAEATE 180

Query: 198 WGVVDKVLMSRI 209
           +G+VD V+  R 
Sbjct: 181 YGLVDLVIDRRP 192


>gi|124514481|gb|EAY55994.1| ATP-dependent Clp protease, proteolytic subunit [Leptospirillum
           rubarum]
          Length = 203

 Score =  280 bits (716), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 116/190 (61%), Positives = 153/190 (80%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P VVEQT RGERSYDIYSRLLK+RI+F+   I+D +A L+ AQLLFLEAE+  K+I+L
Sbjct: 2   LIPYVVEQTTRGERSYDIYSRLLKDRIIFLGTAIDDMVANLVIAQLLFLEAEDASKDINL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVTAG+AIYDTMQ+IKP +ST C+GQAASMG++LL+AG  G RFALPNARI++
Sbjct: 62  YINSPGGVVTAGLAIYDTMQYIKPDVSTICVGQAASMGAVLLAAGADGKRFALPNARIMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA++IE HA++I+K++  LN I  K+  ++  +V +  DRD+ +SA +A  
Sbjct: 122 HQPLGGVQGQATEIEIHAREILKMREHLNGILAKHTKQSLAKVSQDTDRDYFLSAEDAKA 181

Query: 198 WGVVDKVLMS 207
           +G+VD V+ S
Sbjct: 182 YGLVDSVISS 191


>gi|186686250|ref|YP_001869446.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nostoc
           punctiforme PCC 73102]
 gi|186468702|gb|ACC84503.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nostoc
           punctiforme PCC 73102]
          Length = 203

 Score =  280 bits (716), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 99/190 (52%), Positives = 147/190 (77%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQ+ RGER++DIYSRLL+ERI+F+  Q+++++A LI AQLL+L+AE+P+K+I +
Sbjct: 1   MIPIVIEQSGRGERAFDIYSRLLRERIIFLGQQVDNNIANLIVAQLLYLDAEDPEKDIYM 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM I+DTM+ I+P + T C G AASMG+ LLSAG KG R +LP++RI++
Sbjct: 61  YINSPGGSVTAGMGIFDTMKHIRPDVCTICTGLAASMGAFLLSAGAKGKRMSLPHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+  K+RLN+    + G+  E + +  +RD  MS  EA +
Sbjct: 121 HQPLGGAQGQATDIEIQAREILYHKKRLNDYLADHTGQPIERIAEDTERDFFMSPEEARE 180

Query: 198 WGVVDKVLMS 207
           +G++D+V+  
Sbjct: 181 YGLIDQVIDR 190


>gi|238018907|ref|ZP_04599333.1| hypothetical protein VEIDISOL_00767 [Veillonella dispar ATCC 17748]
 gi|237864391|gb|EEP65681.1| hypothetical protein VEIDISOL_00767 [Veillonella dispar ATCC 17748]
          Length = 197

 Score =  280 bits (716), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 117/196 (59%), Positives = 157/196 (80%), Gaps = 1/196 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP+VVEQ+ RGERSYDIYSRLLK+RI+F+ G I+D++A  + AQ+LFLEAE+P K+I LY
Sbjct: 3   VPIVVEQSERGERSYDIYSRLLKDRIIFLGGPIDDNVANAVIAQMLFLEAEDPDKDIHLY 62

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGVVTAGMAIYDTMQ+IKP +ST C+G AASMG++LL+AG KG R+ALP+AR+++H
Sbjct: 63  INSPGGVVTAGMAIYDTMQYIKPDVSTICVGSAASMGAVLLTAGAKGKRYALPHARVMIH 122

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQAS+IE HA++I++++  LN I     G+  E V +  DRD+ MSA +A ++
Sbjct: 123 QPLGGVQGQASEIEIHAREILRMREELNGILASRSGQDIEVVARDTDRDNFMSAQDAVEY 182

Query: 199 GVVDKVLMSRIDIEEK 214
           G++D+VL  R  +E K
Sbjct: 183 GLIDEVLT-REPVESK 197


>gi|226491764|ref|NP_001150643.1| ATP-dependent Clp protease proteolytic subunit [Zea mays]
 gi|195640820|gb|ACG39878.1| ATP-dependent Clp protease proteolytic subunit [Zea mays]
          Length = 302

 Score =  280 bits (716), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 117/193 (60%), Positives = 156/193 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+E T+RGER+YDI+SRLLKERIV + G I D  A+L+ AQLLFLE+ENP K + 
Sbjct: 76  GLVPMVIETTSRGERAYDIFSRLLKERIVCIHGPIADDTASLVVAQLLFLESENPLKPVH 135

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGVVTAG+AIYDTMQ+I+ P++T C+GQAASMGSLLL+AG  G R ALPNAR++
Sbjct: 136 LYINSPGGVVTAGLAIYDTMQYIRCPVTTLCIGQAASMGSLLLAAGAPGERRALPNARVM 195

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  GQA+DI   A++I+K++ RLN+IY K+  +  +++E+ ++RD  M   EA 
Sbjct: 196 IHQPSGGAQGQATDIAIQAKEILKMRDRLNKIYQKHTRQPIDKIEQCMERDLFMDPEEAR 255

Query: 197 DWGVVDKVLMSRI 209
           DWG++D+V+ +R 
Sbjct: 256 DWGLIDEVIENRP 268


>gi|228474429|ref|ZP_04059164.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus hominis SK119]
 gi|314936932|ref|ZP_07844279.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus hominis subsp. hominis C80]
 gi|228271788|gb|EEK13135.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus hominis SK119]
 gi|313655551|gb|EFS19296.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus hominis subsp. hominis C80]
          Length = 195

 Score =  280 bits (716), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 104/191 (54%), Positives = 144/191 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+E TNRGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL+A++ +K+I
Sbjct: 1   MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLQAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG AIYDT+Q IKP + T C+G AASMGS LL+AG KG RFALPNA +
Sbjct: 61  YLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGTKGKRFALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A  I+K + +LN I  +  G+  E ++K  DRD+ ++A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAANHILKTREKLNRILAERTGQNIETIQKDTDRDNFLTADEA 180

Query: 196 CDWGVVDKVLM 206
            ++G++D V+ 
Sbjct: 181 KEYGLIDHVMQ 191


>gi|206602656|gb|EDZ39137.1| Peptidase S14, ClpP [Leptospirillum sp. Group II '5-way CG']
          Length = 203

 Score =  280 bits (716), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 116/190 (61%), Positives = 153/190 (80%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P VVEQT RGERSYDIYSRLLK+RI+F+   I+D +A L+ AQLLFLEAE+  K+I+L
Sbjct: 2   LIPYVVEQTTRGERSYDIYSRLLKDRIIFLGTAIDDMVANLVIAQLLFLEAEDASKDINL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVTAG+AIYDTMQ+IKP +ST C+GQAASMG++LL+AG  G RFALPNARI++
Sbjct: 62  YINSPGGVVTAGLAIYDTMQYIKPDVSTICVGQAASMGAVLLAAGADGKRFALPNARIMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA++IE HA++I+K++  LN I  K+  ++  +V +  DRD+ +SA +A  
Sbjct: 122 HQPLGGVQGQATEIEIHAREILKMREHLNGILAKHTKQSLAKVAQDTDRDYFLSAEDAKA 181

Query: 198 WGVVDKVLMS 207
           +G+VD V+ S
Sbjct: 182 YGLVDSVISS 191


>gi|124026830|ref|YP_001015945.1| Clp protease proteolytic subunit [Prochlorococcus marinus str.
           NATL1A]
 gi|123961898|gb|ABM76681.1| Clp protease proteolytic subunit [Prochlorococcus marinus str.
           NATL1A]
          Length = 218

 Score =  280 bits (716), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 97/191 (50%), Positives = 144/191 (75%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G++P V+EQ+ +G+R++DIYSRLL+ERI+F+   + D +A  + AQ+LFLEA++P+K+I 
Sbjct: 24  GVLPTVIEQSGQGDRAFDIYSRLLRERIIFLGTDVNDQVADALVAQMLFLEADDPEKDIQ 83

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LY+NSPGG VTAG+AIYDTMQ + P + T C G AASMG+ LLS G KG R ALPN+RI+
Sbjct: 84  LYVNSPGGSVTAGLAIYDTMQQVSPDVITICYGLAASMGAFLLSGGTKGKRLALPNSRIM 143

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA +IE  A++I+ +K  LN +  ++ G+  +++ +  DRDH +S  EA 
Sbjct: 144 IHQPLGGAQGQAVEIEIQAKEILYLKETLNSLLAEHTGQNIQKISEDTDRDHFLSPQEAV 203

Query: 197 DWGVVDKVLMS 207
           ++G++DKV+ +
Sbjct: 204 EYGLIDKVVSN 214


>gi|328676003|gb|AEB28678.1| ATP-dependent Clp protease proteolytic subunit [Francisella cf.
           novicida 3523]
          Length = 201

 Score =  280 bits (716), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 115/198 (58%), Positives = 154/198 (77%)

Query: 14  VFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQK 73
           +   LVP V+E+T  GER++DIYSRLLKERIVF+ G++ DH A L+ AQLLFLE+E+P K
Sbjct: 2   ITNNLVPTVIEKTAGGERAFDIYSRLLKERIVFLNGEVNDHSANLVIAQLLFLESEDPDK 61

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I  YINSPGG+VTAGM +YDTMQFIKP +ST C+G AASMGSLLL+ G KG R++LP++
Sbjct: 62  DIYFYINSPGGMVTAGMGVYDTMQFIKPDVSTICIGLAASMGSLLLAGGAKGKRYSLPSS 121

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           +I++HQP GGF GQASDIE HA++I++IK RLN++   + G+  + + K  DRD+ M A 
Sbjct: 122 QIMIHQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLDTIIKDTDRDNFMMAD 181

Query: 194 EACDWGVVDKVLMSRIDI 211
           EA  +G++D V+ SR  I
Sbjct: 182 EAKAYGLIDHVIESREAI 199


>gi|208434705|ref|YP_002266371.1| ATP-dependent clp protease proteolytic component [Helicobacter
           pylori G27]
 gi|210134994|ref|YP_002301433.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           P12]
 gi|217032887|ref|ZP_03438364.1| hypothetical protein HPB128_152g4 [Helicobacter pylori B128]
 gi|298736497|ref|YP_003729023.1| ATP-dependent Clp protease, protease subunit [Helicobacter pylori
           B8]
 gi|116243140|sp|Q1CT76|CLPP_HELPH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706454|sp|B5Z7F6|CLPP_HELPG RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|208432634|gb|ACI27505.1| ATP-dependent clp protease proteolytic component [Helicobacter
           pylori G27]
 gi|210132962|gb|ACJ07953.1| ATP-dependent clp protease proteolytic component [Helicobacter
           pylori P12]
 gi|216945381|gb|EEC24049.1| hypothetical protein HPB128_152g4 [Helicobacter pylori B128]
 gi|298355687|emb|CBI66559.1| ATP-dependent Clp protease, protease subunit [Helicobacter pylori
           B8]
 gi|317009196|gb|ADU79776.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           India7]
 gi|317011009|gb|ADU84756.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           SouthAfrica7]
 gi|317012604|gb|ADU83212.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           Lithuania75]
 gi|317178846|dbj|BAJ56634.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           F30]
          Length = 195

 Score =  280 bits (716), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 113/195 (57%), Positives = 155/195 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +G +P V+E T+RGERSYDIYSRLLK+RIV ++G+I D +A+ I AQLLFLEAE+P+K+I
Sbjct: 1   MGYIPYVIENTDRGERSYDIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+T+G++IYDTM FI+P +ST C+GQAASMG+ LLS G KG RF+LP++RI
Sbjct: 61  GLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDIE  + +I+++K  +N I  +N G++ E++ K  DRD  MSA EA
Sbjct: 121 MIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEA 180

Query: 196 CDWGVVDKVLMSRID 210
            ++G++DKVL   + 
Sbjct: 181 KEYGLIDKVLQKNVK 195


>gi|167038050|ref|YP_001665628.1| ATP-dependent Clp protease proteolytic subunit [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167040915|ref|YP_001663900.1| ATP-dependent Clp protease proteolytic subunit [Thermoanaerobacter
           sp. X514]
 gi|256752437|ref|ZP_05493296.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914951|ref|ZP_07132267.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter sp. X561]
 gi|307723815|ref|YP_003903566.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter sp. X513]
 gi|320116459|ref|YP_004186618.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|226706551|sp|B0KBA4|CLPP_THEP3 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706552|sp|B0K533|CLPP_THEPX RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166855155|gb|ABY93564.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter sp. X514]
 gi|166856884|gb|ABY95292.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|256748706|gb|EEU61751.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889886|gb|EFK85032.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter sp. X561]
 gi|307580876|gb|ADN54275.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter sp. X513]
 gi|319929550|gb|ADV80235.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 195

 Score =  280 bits (716), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 111/190 (58%), Positives = 150/190 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQTNRGERSYDI+SRLLK+RIVF+  +I D  A+L+ AQLLFLEAE+P K+I
Sbjct: 1   MSLVPIVVEQTNRGERSYDIFSRLLKDRIVFLGEEINDTTASLVIAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +TAG AIYDTMQ+IKP + T C+G AASM + LL+AG KG RFALPN+ I
Sbjct: 61  WLYINSPGGSITAGFAIYDTMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+ HA+ I+K++ +L++I  +N G+  E+++   +RD  M A +A
Sbjct: 121 MIHQPLGGMQGQATDIKIHAERILKLRDKLDKILAENTGQPIEKIKADTERDFFMDAEDA 180

Query: 196 CDWGVVDKVL 205
             +G++D+VL
Sbjct: 181 KAYGIIDEVL 190


>gi|320530213|ref|ZP_08031283.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Selenomonas
           artemidis F0399]
 gi|320137646|gb|EFW29558.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Selenomonas
           artemidis F0399]
          Length = 199

 Score =  280 bits (716), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 109/196 (55%), Positives = 158/196 (80%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MVVE ++RGER+YDIYSRLLKERI+F+ G I+D++A ++ AQ+LFLE+E+P K+I LYIN
Sbjct: 1   MVVENSSRGERAYDIYSRLLKERIIFLGGPIDDNVANVVVAQMLFLESEDPDKDIHLYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGGVVTAG+AIYDTMQ+IKP +ST C+GQAASMGS+LL+AG KG R+ALP+ARI++HQP
Sbjct: 61  SPGGVVTAGLAIYDTMQYIKPDVSTICIGQAASMGSILLTAGAKGKRYALPHARIMIHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            GG  GQ++DI+  A++I++++   NEI  ++ G+  +++    +RD+ MSA EA  +G+
Sbjct: 121 LGGAQGQSTDIQIQAKEILRLREVGNEILARHTGQDTDKINVDTERDNFMSAEEAKAYGL 180

Query: 201 VDKVLMSRIDIEEKSK 216
           +D+V++      ++SK
Sbjct: 181 IDEVVVRPPAASKESK 196


>gi|227824397|ref|ZP_03989229.1| ATP-dependent Clp protease [Acidaminococcus sp. D21]
 gi|226904896|gb|EEH90814.1| ATP-dependent Clp protease [Acidaminococcus sp. D21]
          Length = 199

 Score =  279 bits (715), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 115/192 (59%), Positives = 158/192 (82%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP+VVEQT++GERSYDIYSRLLK+RI+FVTG+IEDHMA LI AQLLFLE+E+P K+I
Sbjct: 4   VSYVPIVVEQTSKGERSYDIYSRLLKDRIIFVTGEIEDHMANLIVAQLLFLESEDPDKDI 63

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG V+AG+AIYDTMQ+I+P +ST C+G AASM S+LL+AG KG RFALP++R+
Sbjct: 64  HLYINSPGGSVSAGLAIYDTMQYIRPDVSTICVGMAASMASILLAAGAKGKRFALPHSRV 123

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DIE HA++I++++  +N+I   + GK  E ++   +RDH ++A EA
Sbjct: 124 MIHQPLGGAQGQATDIEIHAREILRVREEMNQILAAHTGKDPETIKLDTERDHYLTADEA 183

Query: 196 CDWGVVDKVLMS 207
             +G++D+V+ S
Sbjct: 184 LSYGLIDQVVAS 195


>gi|242309637|ref|ZP_04808792.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter
           pullorum MIT 98-5489]
 gi|239523638|gb|EEQ63504.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter
           pullorum MIT 98-5489]
          Length = 196

 Score =  279 bits (715), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 115/189 (60%), Positives = 151/189 (79%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP+V+E+T RGERSYDIYSRLLK+RI+ ++GQI+D +A+ I AQLLFLEAE+PQK+I LY
Sbjct: 5   VPIVIEKTGRGERSYDIYSRLLKDRIIMLSGQIDDGIASSIVAQLLFLEAEDPQKDIYLY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGVVT+G++IYDTM +IKP I T C+GQAASMG+ LLS G KG R++LPN+RI++H
Sbjct: 65  INSPGGVVTSGLSIYDTMNYIKPDICTICIGQAASMGAFLLSCGTKGKRYSLPNSRIMIH 124

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA+DIE  A++I+++K  LNEI   N  ++ E++ K  DRD  MSA EA  +
Sbjct: 125 QPLGGAQGQATDIEIQAKEILRLKATLNEILAANTNQSLEKISKDTDRDFFMSAQEAKKY 184

Query: 199 GVVDKVLMS 207
           G++D VL  
Sbjct: 185 GLIDNVLTK 193


>gi|154687585|ref|YP_001422746.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           amyloliquefaciens FZB42]
 gi|308175199|ref|YP_003921904.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           amyloliquefaciens DSM 7]
 gi|166201799|sp|A7Z939|CLPP_BACA2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|154353436|gb|ABS75515.1| ClpP [Bacillus amyloliquefaciens FZB42]
 gi|307608063|emb|CBI44434.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           amyloliquefaciens DSM 7]
 gi|328555171|gb|AEB25663.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           amyloliquefaciens TA208]
 gi|328913529|gb|AEB65125.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           amyloliquefaciens LL3]
          Length = 198

 Score =  279 bits (715), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 110/198 (55%), Positives = 156/198 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFLEAE+P+K+I
Sbjct: 1   MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGG +TAGMAIYDTMQFIKP +ST C+G AASMG+ LL+AGEKG R+ALPN+ +
Sbjct: 61  SIYINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN++  +  G+  E +E+  DRD+  SA EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSADEA 180

Query: 196 CDWGVVDKVLMSRIDIEE 213
            ++G++DKVL    + ++
Sbjct: 181 LEYGLIDKVLTRNTEDQK 198


>gi|295401529|ref|ZP_06811498.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312109546|ref|YP_003987862.1| ATP-dependent Clp protease proteolytic subunit ClpP [Geobacillus
           sp. Y4.1MC1]
 gi|294976441|gb|EFG52050.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311214647|gb|ADP73251.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus
           sp. Y4.1MC1]
          Length = 196

 Score =  279 bits (715), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 110/197 (55%), Positives = 155/197 (78%), Gaps = 1/197 (0%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT+RGER+YDIYSRLLK+RI+ +   I+D +A  I +QLLFL AE+P+K+I
Sbjct: 1   MNLIPTVIEQTSRGERAYDIYSRLLKDRIIILGSPIDDQVANSIVSQLLFLAAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG +TAG+AIYDTMQFIKP +ST C+G AASMG+ LL+AG KG RFALPN+ I
Sbjct: 61  SLYINSPGGSITAGLAIYDTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN I  +N G+  + +E+  DRD+ M+A +A
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILFLRDKLNRILSENTGQPIDVIERDTDRDNFMTAQKA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G++D+VL  R+D +
Sbjct: 181 QEYGIIDRVLT-RVDEK 196


>gi|188581623|ref|YP_001925068.1| ATP-dependent Clp protease proteolytic subunit [Methylobacterium
           populi BJ001]
 gi|226706462|sp|B1Z9C7|CLPP_METPB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|179345121|gb|ACB80533.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Methylobacterium populi BJ001]
          Length = 208

 Score =  279 bits (715), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 131/203 (64%), Positives = 170/203 (83%), Gaps = 1/203 (0%)

Query: 9   KDSEDVF-LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           +D  D F   LVPMVVEQ++RGER++DIYSRLL+ERI+F+TG +ED  A+LI AQLLFLE
Sbjct: 2   RDPVDYFHNSLVPMVVEQSSRGERAFDIYSRLLRERIIFLTGPVEDQGASLIVAQLLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AENP+KEIS YINSPGGVVT+G++IYDTMQFI+ P++T C+GQAASMGSLLL+AGE G R
Sbjct: 62  AENPKKEISFYINSPGGVVTSGLSIYDTMQFIRCPVTTLCVGQAASMGSLLLAAGEAGHR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           FALPNARI++HQPSGGF GQA+DI  HA++I  +K+RLNEIYVK+ G+ YE + + L+RD
Sbjct: 122 FALPNARIMVHQPSGGFQGQATDILIHAREIEALKKRLNEIYVKHTGRDYETIHQALERD 181

Query: 188 HIMSASEACDWGVVDKVLMSRID 210
           + M+A  A ++G++D +L  R +
Sbjct: 182 NFMTADAAKEFGLIDDILHKRPE 204


>gi|195645066|gb|ACG42001.1| ATP-dependent Clp protease proteolytic subunit [Zea mays]
          Length = 302

 Score =  279 bits (715), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 117/193 (60%), Positives = 156/193 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+E T+RGER+YDI+SRLLKERIV + G I D  A+L+ AQLLFLE+ENP K + 
Sbjct: 76  GLVPMVIETTSRGERAYDIFSRLLKERIVCIHGPIADDTASLVVAQLLFLESENPLKPVH 135

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGVVTAG+AIYDTMQ+I+ P++T C+GQAASMGSLLL+AG  G R ALPNAR++
Sbjct: 136 LYINSPGGVVTAGLAIYDTMQYIRCPVTTLCIGQAASMGSLLLAAGAPGERRALPNARVM 195

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  GQA+DI   A++I+K++ RLN+IY K+  +  +++E+ ++RD  M   EA 
Sbjct: 196 IHQPSGGAQGQATDIAIQAKEILKMRDRLNKIYQKHTRQPIDKIEQCMERDLFMDPEEAR 255

Query: 197 DWGVVDKVLMSRI 209
           DWG++D+V+ +R 
Sbjct: 256 DWGLIDEVIENRP 268


>gi|224373739|ref|YP_002608111.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nautilia
           profundicola AmH]
 gi|223589486|gb|ACM93222.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nautilia
           profundicola AmH]
          Length = 196

 Score =  279 bits (715), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 118/191 (61%), Positives = 158/191 (82%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+E+T RGER+YDIYSRLLK+RI+ + G+I DH++++I AQ+LFLEAENP+K+I L
Sbjct: 4   LVPTVIEKTGRGERAYDIYSRLLKDRIIMLQGEINDHVSSIIVAQMLFLEAENPEKDIYL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+GMAIYDTM +IKP + T CMGQAASMG+ LLS+G KG RFALP+ARI++
Sbjct: 64  YINSPGGVVTSGMAIYDTMNYIKPDVVTICMGQAASMGAFLLSSGAKGKRFALPHARIMI 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE HA++I+++K+ LN+I  +N G++  ++E+  +RD  MSA EA  
Sbjct: 124 HQPLGGAQGQATDIEIHAKEILRMKKELNKILAENTGQSVRKIERDTERDFFMSAEEAMK 183

Query: 198 WGVVDKVLMSR 208
           +G++DKVL  R
Sbjct: 184 YGLIDKVLKKR 194


>gi|15611797|ref|NP_223448.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           J99]
 gi|308184578|ref|YP_003928711.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           SJM180]
 gi|6685330|sp|Q9ZL50|CLPP_HELPJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|4155294|gb|AAD06311.1| ATP-DEPENDENT PROTEASE, PROTEOLYTIC SUBUNIT [Helicobacter pylori
           J99]
 gi|308060498|gb|ADO02394.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           SJM180]
 gi|317014204|gb|ADU81640.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           Gambia94/24]
 gi|325996073|gb|ADZ51478.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           2018]
 gi|325997669|gb|ADZ49877.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           2017]
          Length = 195

 Score =  279 bits (715), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 113/195 (57%), Positives = 154/195 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +G +P V+E T RGERSYDIYSRLLK+RIV ++G+I D +A+ I AQLLFLEAE+P+K+I
Sbjct: 1   MGYIPYVIENTERGERSYDIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+T+G++IYDTM FI+P +ST C+GQAASMG+ LLS G KG RF+LP++RI
Sbjct: 61  GLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDIE  + +I+++K  +N I  +N G++ E++ K  DRD  MSA EA
Sbjct: 121 MIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEA 180

Query: 196 CDWGVVDKVLMSRID 210
            ++G++DKVL   + 
Sbjct: 181 KEYGLIDKVLQKNVK 195


>gi|296330330|ref|ZP_06872811.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305676065|ref|YP_003867737.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
           subsp. spizizenii str. W23]
 gi|296152598|gb|EFG93466.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305414309|gb|ADM39428.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
           subsp. spizizenii str. W23]
          Length = 198

 Score =  279 bits (715), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 109/198 (55%), Positives = 156/198 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFLEAE+P+K+I
Sbjct: 1   MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGG +TAGMAIYDTMQFIKP +ST C+G AASMG+ LL+AGEKG R+ALPN+ +
Sbjct: 61  SIYINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN++  +  G+  E +E+  DRD+  SA EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEA 180

Query: 196 CDWGVVDKVLMSRIDIEE 213
            ++G++DK+L    + ++
Sbjct: 181 LEYGLIDKILTRNTEEQK 198


>gi|56421597|ref|YP_148915.1| ATP-dependent Clp protease proteolytic subunit [Geobacillus
           kaustophilus HTA426]
 gi|261420500|ref|YP_003254182.1| ATP-dependent Clp protease proteolytic subunit [Geobacillus sp.
           Y412MC61]
 gi|319768169|ref|YP_004133670.1| ATP-dependent Clp protease proteolytic subunit ClpP [Geobacillus
           sp. Y412MC52]
 gi|67460172|sp|Q5KVD9|CLPP_GEOKA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|56381439|dbj|BAD77347.1| ATP-dependent Clp protease proteolytic subunit (class III
           heat-shock protein) [Geobacillus kaustophilus HTA426]
 gi|261376957|gb|ACX79700.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus
           sp. Y412MC61]
 gi|317113035|gb|ADU95527.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus
           sp. Y412MC52]
          Length = 196

 Score =  279 bits (715), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 112/195 (57%), Positives = 152/195 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RIVF+   I+D +A  I +QLLFL AE+P K+I
Sbjct: 1   MYLIPTVIEQTNRGERAYDIYSRLLKDRIVFLGSPIDDQVANSIVSQLLFLAAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG +TAG+AIYDTMQFIKP +ST C+G AASMG+ LL+AG KG RFALPN+ I
Sbjct: 61  SLYINSPGGSITAGLAIYDTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN I  +N G+  E +E+  DRD+ M+A +A
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILFLRDKLNRILSENTGQPIEVIERDTDRDNFMTAQKA 180

Query: 196 CDWGVVDKVLMSRID 210
            ++G++D+VL    +
Sbjct: 181 MEYGIIDRVLTRADE 195


>gi|18310375|ref|NP_562309.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           perfringens str. 13]
 gi|110799833|ref|YP_696088.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           perfringens ATCC 13124]
 gi|110803073|ref|YP_698704.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           perfringens SM101]
 gi|168207806|ref|ZP_02633811.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           perfringens E str. JGS1987]
 gi|168212102|ref|ZP_02637727.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           perfringens B str. ATCC 3626]
 gi|168215325|ref|ZP_02640950.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           perfringens CPE str. F4969]
 gi|168217824|ref|ZP_02643449.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           perfringens NCTC 8239]
 gi|169342288|ref|ZP_02863366.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           perfringens C str. JGS1495]
 gi|182627116|ref|ZP_02954834.1| CAAX amino terminal protease family protein [Clostridium
           perfringens D str. JGS1721]
 gi|21759067|sp|Q8XKK1|CLPP_CLOPE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|123146116|sp|Q0ST53|CLPP_CLOPS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|123148745|sp|Q0TQK2|CLPP_CLOP1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|18145055|dbj|BAB81099.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           perfringens str. 13]
 gi|110674480|gb|ABG83467.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           perfringens ATCC 13124]
 gi|110683574|gb|ABG86944.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           perfringens SM101]
 gi|169299615|gb|EDS81674.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           perfringens C str. JGS1495]
 gi|170660863|gb|EDT13546.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           perfringens E str. JGS1987]
 gi|170709986|gb|EDT22168.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           perfringens B str. ATCC 3626]
 gi|170713287|gb|EDT25469.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           perfringens CPE str. F4969]
 gi|177907505|gb|EDT70163.1| CAAX amino terminal protease family protein [Clostridium
           perfringens D str. JGS1721]
 gi|182380151|gb|EDT77630.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           perfringens NCTC 8239]
          Length = 194

 Score =  279 bits (715), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 115/194 (59%), Positives = 157/194 (80%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
              LVPMVVEQT++GERSYDI+SRLLK+RI+ ++G++ D  A L+ AQLLFLE+E+P K+
Sbjct: 1   MSNLVPMVVEQTSKGERSYDIFSRLLKDRIIMLSGEVNDVTANLVVAQLLFLESEDPDKD 60

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I LYINSPGG +T+GMAIYDTMQ+IKP +ST C+G AASMG+ LLS+G KG RFALPNA 
Sbjct: 61  IHLYINSPGGSITSGMAIYDTMQYIKPDVSTICIGMAASMGAFLLSSGAKGKRFALPNAE 120

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQP GGF GQA+DI+ HA+ I+KIK +LN+I  +N  +  E+++  ++RD+ M ASE
Sbjct: 121 IMIHQPLGGFQGQATDIDIHAKRILKIKDKLNQILSENTNQPLEKIKVDVERDYFMEASE 180

Query: 195 ACDWGVVDKVLMSR 208
           A ++G++DKV+  +
Sbjct: 181 AVEYGLIDKVIERK 194


>gi|167628597|ref|YP_001679096.1| ATP-dependent clp protease proteolytic subunit [Heliobacterium
           modesticaldum Ice1]
 gi|167591337|gb|ABZ83085.1| ATP-dependent clp protease proteolytic subunit [Heliobacterium
           modesticaldum Ice1]
          Length = 199

 Score =  279 bits (715), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 113/189 (59%), Positives = 146/189 (77%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQTNRGER+YDIYSRLLK+RI+ +   I+D++A LI AQLLFLEAE+P K+I L
Sbjct: 4   LVPMVVEQTNRGERAYDIYSRLLKDRIIILGSAIDDNVANLIIAQLLFLEAEDPDKDIHL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +T+G AIYDTMQ I+  +ST C+G AASMG+ LL+AG KG R+A PNA I++
Sbjct: 64  YINSPGGAITSGFAIYDTMQLIRCDVSTICVGMAASMGAFLLAAGAKGKRYASPNAEIMI 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA++IE HA+ I+K + RLN+I     G+  E +E+  DRD+ MSA EA  
Sbjct: 124 HQPLGGVKGQATEIEIHARHILKTRDRLNKILADRTGQPLERIERDTDRDYFMSAEEAKA 183

Query: 198 WGVVDKVLM 206
           +G++D V+ 
Sbjct: 184 YGIIDGVME 192


>gi|254525962|ref|ZP_05138014.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Prochlorococcus marinus str. MIT 9202]
 gi|221537386|gb|EEE39839.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Prochlorococcus marinus str. MIT 9202]
          Length = 214

 Score =  279 bits (715), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 103/189 (54%), Positives = 143/189 (75%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP V+EQ+ RGER++DIYSRLL+ERI+F+   I D ++  + AQLLFLEAE+P+K+I +Y
Sbjct: 26  VPTVIEQSGRGERAFDIYSRLLRERIIFLGTGINDQVSDSLVAQLLFLEAEDPEKDIQIY 85

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAGMAIYDTMQ I P + T C G AASMG+ LLS G KG R ALPN+RI++H
Sbjct: 86  INSPGGSVTAGMAIYDTMQQISPDVVTICFGVAASMGAFLLSGGAKGKRLALPNSRIMIH 145

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA +IE  A++I+ +K+ LN +  ++ G+  E++ +  +RD+ +S SEA ++
Sbjct: 146 QPLGGAQGQAVEIEIQAKEILFLKKTLNSLLAEHTGQPLEKINEDTERDYFLSPSEAVEY 205

Query: 199 GVVDKVLMS 207
           G++DKV+  
Sbjct: 206 GLIDKVIKK 214


>gi|66044992|ref|YP_234833.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. syringae B728a]
 gi|71733685|ref|YP_273935.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|237803596|ref|ZP_04591181.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|257483815|ref|ZP_05637856.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|289627504|ref|ZP_06460458.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289649945|ref|ZP_06481288.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|289679415|ref|ZP_06500305.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. syringae FF5]
 gi|298486263|ref|ZP_07004326.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|301384120|ref|ZP_07232538.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. tomato Max13]
 gi|302059517|ref|ZP_07251058.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. tomato K40]
 gi|302135032|ref|ZP_07261022.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|302187983|ref|ZP_07264656.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. syringae 642]
 gi|38257468|sp|Q87YR6|CLPP_PSESM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|81308384|sp|Q4ZVM7|CLPP_PSEU2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|110816461|sp|Q48KZ0|CLPP_PSE14 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|63255699|gb|AAY36795.1| Peptidase S14, ClpP [Pseudomonas syringae pv. syringae B728a]
 gi|71554238|gb|AAZ33449.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|298159270|gb|EFI00328.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|320325361|gb|EFW81428.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320327654|gb|EFW83662.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330868375|gb|EGH03084.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. aesculi str. 0893_23]
 gi|330878772|gb|EGH12921.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
 gi|330882125|gb|EGH16274.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330889997|gb|EGH22658.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. mori str. 301020]
 gi|330897794|gb|EGH29213.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. japonica str. M301072PT]
 gi|330939706|gb|EGH43001.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. pisi str. 1704B]
 gi|330952797|gb|EGH53057.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae Cit 7]
 gi|330959387|gb|EGH59647.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. maculicola str. ES4326]
 gi|330963320|gb|EGH63580.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. actinidiae str. M302091]
 gi|330972589|gb|EGH72655.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. aceris str. M302273PT]
 gi|330985639|gb|EGH83742.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. lachrymans str. M301315]
 gi|331012679|gb|EGH92735.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|331019229|gb|EGH99285.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
 gi|331025578|gb|EGI05634.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 213

 Score =  279 bits (715), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 117/192 (60%), Positives = 154/192 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+EQ+ RGER+YDIYSRLLKER++F+ G +ED+MA LI AQLLFLEAENP K+I 
Sbjct: 18  GLVPMVIEQSARGERAYDIYSRLLKERVIFMVGPVEDYMANLIAAQLLFLEAENPDKDIH 77

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+ LL+ G +G R  LPN+R++
Sbjct: 78  LYINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAGGAEGKRHCLPNSRMM 137

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDI+ HA++I+ I+ RLN +   + G++ E +E+  +RD+ MSA  A 
Sbjct: 138 IHQPLGGFQGQASDIDIHAKEILHIRHRLNSLLAHHTGQSLETIERDTERDNFMSAERAA 197

Query: 197 DWGVVDKVLMSR 208
           ++G++D V+  R
Sbjct: 198 EYGLIDSVINKR 209


>gi|108757731|ref|YP_634562.1| ATP-dependent Clp protease proteolytic subunit [Myxococcus xanthus
           DK 1622]
 gi|3023519|sp|O30612|CLPP2_MYXXD RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|2384690|gb|AAB97819.1| proteosome major subunit [Myxococcus xanthus DK 1622]
 gi|108461611|gb|ABF86796.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Myxococcus
           xanthus DK 1622]
          Length = 203

 Score =  279 bits (715), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 107/189 (56%), Positives = 150/189 (79%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP V+E T+RGER+YD+YSRLLK+RI+ +   + D +A +I AQLLFLE+E+P K I+LY
Sbjct: 3   VPFVIETTHRGERAYDLYSRLLKDRIIMLGTPVNDDVANIIVAQLLFLESEDPDKGINLY 62

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDTMQ++K P+ST C+GQAASMG+LLL AG KG R+ALPN+RI++H
Sbjct: 63  INSPGGSVTAGLAIYDTMQYVKCPVSTICVGQAASMGALLLLAGAKGKRYALPNSRIMIH 122

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA+DI+  A++I++++  +N + VK+ G T E +EK  +RD+ MSA +A  +
Sbjct: 123 QPLGGAQGQATDIDIQAKEILRLRSYINGLIVKHTGHTIERIEKDTERDYFMSAEDARQY 182

Query: 199 GVVDKVLMS 207
           G++D+V+  
Sbjct: 183 GLIDEVVEK 191


>gi|157414262|ref|YP_001485128.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9215]
 gi|157388837|gb|ABV51542.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9215]
          Length = 214

 Score =  279 bits (715), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 103/189 (54%), Positives = 143/189 (75%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP V+EQ+ RGER++DIYSRLL+ERI+F+   I D ++  + AQLLFLEAE+P+K+I +Y
Sbjct: 26  VPTVIEQSGRGERAFDIYSRLLRERIIFLGTGINDQVSDSLVAQLLFLEAEDPEKDIQIY 85

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAGMAIYDTMQ I P + T C G AASMG+ LLS G KG R ALPN+RI++H
Sbjct: 86  INSPGGSVTAGMAIYDTMQQISPDVVTICFGVAASMGAFLLSGGAKGKRLALPNSRIMIH 145

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA +IE  A++I+ +K+ LN +  ++ G+  E++ +  +RD+ +S SEA ++
Sbjct: 146 QPLGGAQGQAVEIEIQAKEILFLKKTLNSLLAEHTGQPLEKINEDTERDYFLSPSEAVEY 205

Query: 199 GVVDKVLMS 207
           G++DKV+  
Sbjct: 206 GLIDKVIKK 214


>gi|148263972|ref|YP_001230678.1| ATP-dependent Clp protease proteolytic subunit [Geobacter
           uraniireducens Rf4]
 gi|189082459|sp|A5GFA0|CLPP_GEOUR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|146397472|gb|ABQ26105.1| ATP-dependent Clp protease proteolytic subunit ClpP [Geobacter
           uraniireducens Rf4]
          Length = 199

 Score =  279 bits (715), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 117/190 (61%), Positives = 157/190 (82%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+VVEQT RGERSYDIYSRLLK+RIVF+ G I+D ++ L+ AQLLFLEAE+P K+I L
Sbjct: 2   LVPIVVEQTGRGERSYDIYSRLLKDRIVFLGGAIDDAISNLVIAQLLFLEAEDPDKDIHL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVTAGMAIYDTM++IK P+ST C+GQAASMG+ LLS GEKG RF+L N+RI++
Sbjct: 62  YINSPGGVVTAGMAIYDTMRYIKAPVSTICVGQAASMGAFLLSGGEKGKRFSLTNSRIMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQA+DI  HAQ+I+++K++LNE+  ++ G+  E++E   +RD+ MS  +A +
Sbjct: 122 HQPLGGFQGQATDIHIHAQEILRMKKKLNELMAEHTGQPVEKLEADTERDYFMSGEDAKN 181

Query: 198 WGVVDKVLMS 207
           +G++D ++  
Sbjct: 182 YGIIDSIISR 191


>gi|121997404|ref|YP_001002191.1| ATP-dependent Clp protease proteolytic subunit [Halorhodospira
           halophila SL1]
 gi|226706517|sp|A1WUM7|CLPP_HALHL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|121588809|gb|ABM61389.1| ATP-dependent Clp protease proteolytic subunit ClpP [Halorhodospira
           halophila SL1]
          Length = 210

 Score =  279 bits (715), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 117/196 (59%), Positives = 157/196 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMVVEQ+ RGER+YDI+SRLLKER++F+ G +ED+ A L+ AQLLFLE+ENP K++ 
Sbjct: 15  GLVPMVVEQSARGERAYDIFSRLLKERVIFLVGPVEDYQANLLVAQLLFLESENPDKDVH 74

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAG+AIYDTMQFIKP ++T C+GQAASMG+LLL+AG +G R ALPN+R++
Sbjct: 75  LYINSPGGSVTAGLAIYDTMQFIKPDVATLCVGQAASMGALLLAAGAEGKRHALPNSRMM 134

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQA+DI+ HA++I+ ++ RLN I   + G+  E + +  DRD+ M+A  A 
Sbjct: 135 IHQPLGGFQGQATDIDIHAREILSMRDRLNTILAHHTGQDIETIRQDTDRDNFMAAEAAA 194

Query: 197 DWGVVDKVLMSRIDIE 212
            +G++D+VL SR   E
Sbjct: 195 QYGLIDRVLTSRGASE 210


>gi|302817596|ref|XP_002990473.1| hypothetical protein SELMODRAFT_131898 [Selaginella moellendorffii]
 gi|300141641|gb|EFJ08350.1| hypothetical protein SELMODRAFT_131898 [Selaginella moellendorffii]
          Length = 253

 Score =  279 bits (715), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 118/201 (58%), Positives = 162/201 (80%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
             +    GL+PMV+E T RGER+YDI+SRLLKERIV + G I D  A+L+ AQLL+LE+E
Sbjct: 21  HHQRRLYGLIPMVIEHTARGERAYDIFSRLLKERIVCIHGPIADDTASLVVAQLLYLESE 80

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP K I LYINSPGGVVTAG+AIYDTMQ+I+ P+ST C+GQAASMGSLLL+AGE G R +
Sbjct: 81  NPLKPIHLYINSPGGVVTAGLAIYDTMQYIRSPVSTLCVGQAASMGSLLLAAGEPGQRRS 140

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPNAR+++HQPSGG SGQASDI   A++I+ ++ RLN++Y K+ G + E+++++++RDH 
Sbjct: 141 LPNARVMVHQPSGGASGQASDIAIQAREILDMRSRLNKLYAKHTGSSIEKIDQSMERDHF 200

Query: 190 MSASEACDWGVVDKVLMSRID 210
           MS  EA ++G++D+V++ R +
Sbjct: 201 MSPEEAKEFGLIDEVIVQRPE 221


>gi|83589392|ref|YP_429401.1| ATP-dependent Clp protease proteolytic subunit [Moorella
           thermoacetica ATCC 39073]
 gi|115311785|sp|Q2RL31|CLPP_MOOTA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|83572306|gb|ABC18858.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moorella
           thermoacetica ATCC 39073]
          Length = 199

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 115/191 (60%), Positives = 152/191 (79%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQT+RGER+YDIYSRLLK+RI+F+   I+DH+A L+ AQ+LFLEAE+P K+I L
Sbjct: 4   LVPMVVEQTSRGERAYDIYSRLLKDRIIFLGSAIDDHVANLVIAQMLFLEAEDPDKDIHL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG ++AGMAI+DTMQ+I+P +ST C+G AASMG+ LL+AG KG RFALPN+ I++
Sbjct: 64  YINSPGGSISAGMAIFDTMQYIRPDVSTICVGLAASMGAFLLAAGAKGKRFALPNSEIMI 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA DIE HA+ I+ I+  LN I  +  GK  E++ +  DRDH M+A EA +
Sbjct: 124 HQPMGGTQGQAVDIEIHAKRILAIRDNLNRILSEITGKPLEQIARDTDRDHFMTAREARE 183

Query: 198 WGVVDKVLMSR 208
           +G++D+V+  R
Sbjct: 184 YGLIDEVITKR 194


>gi|218290814|ref|ZP_03494883.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218239172|gb|EED06373.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 198

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 112/188 (59%), Positives = 147/188 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            +P V+EQT+RGER+YDIYSRLLK+RIV +   I+D +A  I AQLLFL A++P+K+I +
Sbjct: 4   PIPYVIEQTSRGERTYDIYSRLLKDRIVILGTPIDDQVANSIVAQLLFLAADDPEKDIQM 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGMAIYDTMQ I+P +ST C+G AASMG+ LL+AGEKG R+ALPNA I++
Sbjct: 64  YINSPGGSVTAGMAIYDTMQHIRPAVSTLCIGMAASMGAFLLAAGEKGKRYALPNAEIMI 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI+ HA+ I+K K +LN +  +  G+  E +E+  DRDH M+A EA  
Sbjct: 124 HQPLGGVEGQASDIKIHAEWILKTKDKLNRLLSERTGQPLEVIERDTDRDHFMTAEEAKA 183

Query: 198 WGVVDKVL 205
           +G++D+VL
Sbjct: 184 YGLIDEVL 191


>gi|258542726|ref|YP_003188159.1| ATP-dependent Clp protease proteolytic subunit [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256633804|dbj|BAH99779.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
           3283-01]
 gi|256636863|dbj|BAI02832.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
           3283-03]
 gi|256639916|dbj|BAI05878.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
           3283-07]
 gi|256642972|dbj|BAI08927.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646027|dbj|BAI11975.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649080|dbj|BAI15021.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652067|dbj|BAI18001.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655124|dbj|BAI21051.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
           3283-12]
          Length = 220

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 131/214 (61%), Positives = 171/214 (79%), Gaps = 1/214 (0%)

Query: 4   EGCAKKDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQ 62
            G   +D  ++F   LVPMVVEQT+RGER++DIYSRLL+ERI+F+TG + D +A+LI AQ
Sbjct: 2   SGMRDRDPVEIFSNALVPMVVEQTSRGERAFDIYSRLLQERIIFLTGPVYDQVASLISAQ 61

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           LL+LE+ NP KEIS YINSPGGVV+AG+AIYDTMQ+I+ P+ST C+GQAASMGSLLL+ G
Sbjct: 62  LLYLESVNPNKEISFYINSPGGVVSAGLAIYDTMQYIRSPVSTVCIGQAASMGSLLLAGG 121

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
           EKG RFALPNAR+++HQPSGG  GQASDIE  A++I+ I+++LNEIY ++ G+T EE+E+
Sbjct: 122 EKGRRFALPNARVMVHQPSGGAQGQASDIEIQAREILIIRQKLNEIYREHTGRTLEEIEQ 181

Query: 183 TLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
            L+RD  MSA EA  +G+VD+V+      E   K
Sbjct: 182 KLERDTYMSAQEAQSFGIVDEVISHHKATETGKK 215


>gi|302671762|ref|YP_003831722.1| ATP-dependent Clp protease proteolytic subunit ClpP [Butyrivibrio
           proteoclasticus B316]
 gi|302396235|gb|ADL35140.1| ATP-dependent Clp protease proteolytic subunit ClpP [Butyrivibrio
           proteoclasticus B316]
          Length = 201

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 109/201 (54%), Positives = 150/201 (74%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT+RGERSYDIYSRLLKERIVF+  ++    A+ I AQLLFLEAE+P K+I
Sbjct: 1   MSLIPYVIEQTSRGERSYDIYSRLLKERIVFLGEEVNAASASTIVAQLLFLEAEDPNKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG +++GMAIYDTM +IK  +ST C+G AASMG+ LL+ G KG R ALPNA +
Sbjct: 61  HMYINSPGGEISSGMAIYDTMNYIKCDVSTICIGMAASMGAFLLAGGAKGKRMALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K K ++N +   N GK+YE+V    +RD+ +SA EA
Sbjct: 121 MIHQPLGGTQGQATEIEIAAKHILKTKEKMNRMLAANTGKSYEQVAADTERDNWLSAQEA 180

Query: 196 CDWGVVDKVLMSRIDIEEKSK 216
            D+G++D ++ +R   +E  K
Sbjct: 181 LDYGLIDSIIENRPSEKEDKK 201


>gi|261380957|ref|ZP_05985530.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
           subflava NJ9703]
 gi|284796216|gb|EFC51563.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
           subflava NJ9703]
          Length = 206

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 122/197 (61%), Positives = 158/197 (80%), Gaps = 2/197 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ+ RGER++DIYSRLLKERIVF+ G + D  A L+ AQLLFLE+ENP K+I  
Sbjct: 9   LVPTVIEQSGRGERAFDIYSRLLKERIVFLIGPVTDESANLVVAQLLFLESENPDKDIFF 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM+IYDTM FIKP +ST C+GQAASMG+ LLSAGEKG RFALPN+RI++
Sbjct: 69  YINSPGGSVTAGMSIYDTMNFIKPHVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMI 128

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG +GQASDIE HA++++KIK +LN +  K+C +   ++E+  DRD+ MSA EA
Sbjct: 129 HQPLISGGLAGQASDIEIHAKELLKIKEKLNRLLAKHCDRDLADLERDTDRDNYMSADEA 188

Query: 196 CDWGVVDKVLMSRIDIE 212
             +G++D+VL +R  ++
Sbjct: 189 KKYGLIDQVLENRASLQ 205


>gi|60389777|sp|Q891J7|CLPP_CLOTE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
          Length = 194

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 116/194 (59%), Positives = 155/194 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQTNRGERSYDIYSRLLK+RI+ ++ Q+ D  A+LI AQLLFLEAE+P K+I
Sbjct: 1   MSLVPVVVEQTNRGERSYDIYSRLLKDRIIMLSDQVNDVTASLIVAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +T+GMAIYDTMQ+IKP +ST C+G AASMG+ LL+AG KG RFALPN+ I
Sbjct: 61  FLYINSPGGSITSGMAIYDTMQYIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DI  HA  I+KIK+ LN I  +  G+  E +++  +RD+ M A++A
Sbjct: 121 MIHQPLGGFQGQATDIGIHADRILKIKQNLNSILSEKTGQPLEVIQRDTERDNFMDANQA 180

Query: 196 CDWGVVDKVLMSRI 209
            D+G++D+V++ + 
Sbjct: 181 KDYGLIDEVMVKKK 194


>gi|303248988|ref|ZP_07335234.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
           fructosovorans JJ]
 gi|302489637|gb|EFL49575.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
           fructosovorans JJ]
          Length = 204

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 117/198 (59%), Positives = 158/198 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP+V+E T R ER+YDIYSRLLK+RI+ +   ++D++A LICAQLLFLE+E+P+KEI
Sbjct: 1   MTTVPIVIETTGRSERAYDIYSRLLKDRIILLGSAVDDYVANLICAQLLFLESEDPEKEI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGGVV+AG+AIYDTMQ++ PP+ST CMGQAASMG+LLL AG  G R+ALP++RI
Sbjct: 61  SLYINSPGGVVSAGLAIYDTMQYVMPPVSTLCMGQAASMGALLLCAGATGTRYALPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGGF GQA+DIE HA++  + +  LNEI  K+ G+  E+++   +RD+ MSA EA
Sbjct: 121 MIHQPSGGFQGQATDIEIHARETRRTREALNEIMAKHTGQPIEKIQVDTERDNFMSAEEA 180

Query: 196 CDWGVVDKVLMSRIDIEE 213
             +G+VDKV  SR  + +
Sbjct: 181 VAYGLVDKVFASREPVAK 198


>gi|297531315|ref|YP_003672590.1| ATP-dependent Clp protease proteolytic subunit ClpP [Geobacillus
           sp. C56-T3]
 gi|297254567|gb|ADI28013.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus
           sp. C56-T3]
          Length = 196

 Score =  279 bits (714), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 112/195 (57%), Positives = 153/195 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RIVF+   I+D +A  I +QLLFL AE+P+K+I
Sbjct: 1   MYLIPTVIEQTNRGERAYDIYSRLLKDRIVFLGSPIDDQVANSIVSQLLFLAAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG +TAG+AIYDTMQFIKP +ST C+G AASMG+ LL+AG KG RFALPN+ I
Sbjct: 61  SLYINSPGGSITAGLAIYDTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN I  +N G+  E +E+  DRD+ M+A +A
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILFLRDKLNRILSENTGQPIEVIERDTDRDNFMTAQKA 180

Query: 196 CDWGVVDKVLMSRID 210
            ++G++D+VL    +
Sbjct: 181 MEYGIIDRVLTRADE 195


>gi|307730796|ref|YP_003908020.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           sp. CCGE1003]
 gi|307585331|gb|ADN58729.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           sp. CCGE1003]
          Length = 219

 Score =  279 bits (714), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 114/202 (56%), Positives = 150/202 (74%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
                 LGLVP V+EQ+ RGER+YDIYSRLL+ERIVF+ G + +  A+LI AQLLFLE+E
Sbjct: 5   YPPVTGLGLVPTVIEQSGRGERAYDIYSRLLRERIVFLVGPVNEQSASLIVAQLLFLESE 64

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP K+IS YINSPGG V  G+AIYDTMQFIKP +ST C G AASMG+ LL AG+ G R+A
Sbjct: 65  NPDKDISFYINSPGGSVYDGLAIYDTMQFIKPEVSTLCTGFAASMGTFLLCAGQPGKRYA 124

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPNARI++HQPSGG  G A+DI+  A++++ ++ RLN +  +  G+  EE+ +  DRD+ 
Sbjct: 125 LPNARIMIHQPSGGGQGTAADIDIQAKEVLYLRERLNTMMAERTGRGVEEIARDTDRDNF 184

Query: 190 MSASEACDWGVVDKVLMSRIDI 211
           MSA  A  +G+VD+VL +R  +
Sbjct: 185 MSAFAAKAYGLVDEVLETRAAL 206


>gi|226533042|ref|NP_001147355.1| ATP-dependent Clp protease proteolytic subunit [Zea mays]
 gi|194700894|gb|ACF84531.1| unknown [Zea mays]
 gi|195610476|gb|ACG27068.1| ATP-dependent Clp protease proteolytic subunit [Zea mays]
          Length = 260

 Score =  279 bits (714), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 119/193 (61%), Positives = 156/193 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+E T+RGER+YDI+SRLLKERIV + G I D  A+L+ AQLLFLE+ENP K + 
Sbjct: 36  GLVPMVIEHTSRGERAYDIFSRLLKERIVCIHGPITDDTASLVVAQLLFLESENPAKPVH 95

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGVVTAG+AIYDTMQ+I+ P++T C+GQAASM SLLL+AG  G R ALPNAR++
Sbjct: 96  LYINSPGGVVTAGLAIYDTMQYIRSPVTTLCIGQAASMASLLLAAGASGERRALPNARVM 155

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG SGQASDI  HA++I+K++ RLN+IY K+ G+  + +E+ ++RD  M   EA 
Sbjct: 156 IHQPSGGASGQASDIAIHAKEILKVRDRLNKIYAKHTGQAIDRIEQCMERDMFMDPEEAH 215

Query: 197 DWGVVDKVLMSRI 209
           +WG++D+V+  R 
Sbjct: 216 EWGLIDEVIEHRP 228


>gi|170744618|ref|YP_001773273.1| ATP-dependent Clp protease proteolytic subunit [Methylobacterium
           sp. 4-46]
 gi|168198892|gb|ACA20839.1| Endopeptidase Clp [Methylobacterium sp. 4-46]
          Length = 208

 Score =  279 bits (714), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 132/205 (64%), Positives = 173/205 (84%), Gaps = 1/205 (0%)

Query: 9   KDSEDVF-LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           +D  + +   LVPMVVEQ++RGER++DIYSRLL+ERI+F+TG +ED+ A+LI AQLLFLE
Sbjct: 2   RDPVEFYNSALVPMVVEQSSRGERAFDIYSRLLRERIIFLTGPVEDYSASLIVAQLLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AENP+KEIS YINSPGGVVT+G++IYDTMQFI+ P++T C+GQAASMGSLLL+AGE G R
Sbjct: 62  AENPKKEISFYINSPGGVVTSGLSIYDTMQFIRCPVATLCVGQAASMGSLLLAAGEPGHR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           FALPNARI++HQPSGGF GQA+DI  HA++I  +KRRLNEIYVK+ G+ Y+ +E+ L+RD
Sbjct: 122 FALPNARIMVHQPSGGFQGQATDILIHAREIEALKRRLNEIYVKHTGRDYDAIEQGLERD 181

Query: 188 HIMSASEACDWGVVDKVLMSRIDIE 212
           + M+A  A +WG++D+VL  R +  
Sbjct: 182 NFMTADAAKEWGLIDEVLQKRAETP 206


>gi|166363928|ref|YP_001656201.1| ATP-dependent protease [Microcystis aeruginosa NIES-843]
 gi|166086301|dbj|BAG01009.1| ATP-dependent protease [Microcystis aeruginosa NIES-843]
          Length = 200

 Score =  279 bits (714), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 103/190 (54%), Positives = 144/190 (75%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+E T RGER++DIYSRLL+ERIVF+  ++   +A LI AQLLFLEAE+P+K+I L
Sbjct: 1   MIPTVIETTGRGERAFDIYSRLLRERIVFLGQEVTSDLANLIVAQLLFLEAEDPEKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG+ I+DTM  I+P +ST C+G AASMG+ LLSAG+ G R +LPN+RI++
Sbjct: 61  YINSPGGSVSAGLGIFDTMNQIRPDVSTICIGLAASMGAFLLSAGKPGKRMSLPNSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+ +K+ LNE    + GK  + + +  +RD  MSA EA D
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYLKQLLNEHLASHTGKPLDLIAEDTERDFFMSAEEALD 180

Query: 198 WGVVDKVLMS 207
           +G++D+V+  
Sbjct: 181 YGLIDQVIDR 190


>gi|152989915|ref|YP_001355637.1| ATP-dependent Clp protease proteolytic subunit [Nitratiruptor sp.
           SB155-2]
 gi|166201830|sp|A6Q1C1|CLPP_NITSB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|151421776|dbj|BAF69280.1| ATP-dependent Clp protease, proteolytic subunit [Nitratiruptor sp.
           SB155-2]
          Length = 196

 Score =  279 bits (714), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 111/189 (58%), Positives = 155/189 (82%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+E+T RGERSYDIYSRLLK+RI+ ++G+I D +A+ I AQLLFLEAE+P K+I LY
Sbjct: 5   IPYVIERTGRGERSYDIYSRLLKDRIIMLSGEINDAVASSIVAQLLFLEAEDPDKDIYLY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGV+T+GM+IYDTM +IKP +ST C+GQAASMG+ LLS+G KG R+ALP+ARI++H
Sbjct: 65  INSPGGVITSGMSIYDTMNYIKPDVSTICIGQAASMGAFLLSSGTKGKRYALPHARIMIH 124

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA+DIE  A++I+++K+ LNEI  +N G++ +++ K  +RD  MS+ EA ++
Sbjct: 125 QPLGGAQGQATDIEIQAKEILRLKKILNEILAENTGQSVKKIAKDTERDFFMSSEEAKEY 184

Query: 199 GVVDKVLMS 207
           G++D+VL  
Sbjct: 185 GLIDQVLEK 193


>gi|308271899|emb|CBX28507.1| ATP-dependent Clp protease proteolytic subunit [uncultured
           Desulfobacterium sp.]
          Length = 206

 Score =  279 bits (714), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 114/201 (56%), Positives = 160/201 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+PMV+EQ++RGER+YDIYSRLLK+RI+F+   + D +A L+ AQLLFLE+E+P K+I
Sbjct: 1   MPLIPMVIEQSSRGERAYDIYSRLLKDRIIFLGTAMNDEVANLLIAQLLFLESEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           + YINSPGGVVT+G+A+YDTMQ+IK  I+T C+GQAASMG+LLL+AG KG R+ALPNARI
Sbjct: 61  NFYINSPGGVVTSGLAVYDTMQYIKSDIATVCIGQAASMGALLLTAGAKGKRYALPNARI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQP GGF GQASDI   A++I+++K  LN+I   + GK  ++++   DRD+ MS  EA
Sbjct: 121 LIHQPMGGFQGQASDIAIQAREILRMKDTLNDILTFHTGKDLKQIQVDTDRDYFMSGKEA 180

Query: 196 CDWGVVDKVLMSRIDIEEKSK 216
            ++G++D V+ +R D++   K
Sbjct: 181 EEYGLIDHVITNRNDLDNIEK 201


>gi|218247705|ref|YP_002373076.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
           sp. PCC 8801]
 gi|257060958|ref|YP_003138846.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
           sp. PCC 8802]
 gi|218168183|gb|ACK66920.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
           sp. PCC 8801]
 gi|256591124|gb|ACV02011.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
           sp. PCC 8802]
          Length = 229

 Score =  279 bits (714), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 107/209 (51%), Positives = 151/209 (72%), Gaps = 2/209 (0%)

Query: 1   MSFEGCAKKDSEDVFL--GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATL 58
           + +    ++ SE   +   +VPMVVEQ+  GER++DIYSRLL+ERIVF+   ++D +A  
Sbjct: 7   LDYSIYNQRSSEIYSMSQNVVPMVVEQSGVGERAFDIYSRLLRERIVFLGTPVDDQVADS 66

Query: 59  ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLL 118
           I AQLLFL+AE+P+K+I LYINSPGG V AG+AIYDTMQ I+P ++T C G AASMG+ L
Sbjct: 67  IVAQLLFLDAEDPEKDIQLYINSPGGSVYAGLAIYDTMQQIRPDVATICFGLAASMGAFL 126

Query: 119 LSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYE 178
           L  G  G R ALP++RI++HQP GG  GQA +IE  A++I+ IKRRLNE+   + G+ ++
Sbjct: 127 LCGGAPGKRMALPSSRIMIHQPLGGAQGQAVEIEIQAKEILYIKRRLNEMLASHTGQPFD 186

Query: 179 EVEKTLDRDHIMSASEACDWGVVDKVLMS 207
            + +  +RD  MSA EA ++G++DKV+  
Sbjct: 187 TIAEDTERDFFMSAQEAKEYGLIDKVISR 215


>gi|284047883|ref|YP_003398222.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Acidaminococcus fermentans DSM 20731]
 gi|283952104|gb|ADB46907.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Acidaminococcus fermentans DSM 20731]
          Length = 197

 Score =  279 bits (714), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 114/190 (60%), Positives = 159/190 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP+VVEQT++GERSYDIYSRLLK+RI+FVTG+IEDHMA LI AQLLFLE+E+P K++
Sbjct: 1   MSYVPIVVEQTSKGERSYDIYSRLLKDRIIFVTGEIEDHMANLIIAQLLFLESEDPDKDV 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG V+AG+AIYDTMQ+I+P +ST C+G AASM S+LL+AG KG R+ALP++R+
Sbjct: 61  HLYINSPGGSVSAGLAIYDTMQYIRPDVSTICVGMAASMASVLLAAGTKGKRYALPHSRV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DIE HA++I++I+  +N+I   + G+T E++    +RDH M+A EA
Sbjct: 121 MIHQPLGGAQGQATDIEIHAREILRIREEMNQILASHTGQTPEQIRLDTERDHFMTAEEA 180

Query: 196 CDWGVVDKVL 205
            ++G++D+V+
Sbjct: 181 ANYGLIDQVV 190


>gi|261837975|gb|ACX97741.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           51]
          Length = 196

 Score =  279 bits (714), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 113/196 (57%), Positives = 155/196 (79%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
            +G +P V+E T+RGERSYDIYSRLLK+RIV ++G+I D +A+ I AQLLFLEAE+P+K+
Sbjct: 1   MMGYIPYVIENTDRGERSYDIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKD 60

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I LYINSPGGV+T+G++IYDTM FI+P +ST C+GQAASMG+ LLS G KG RF+LP++R
Sbjct: 61  IGLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSR 120

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQP GG  GQASDIE  + +I+++K  +N I  +N G++ E++ K  DRD  MSA E
Sbjct: 121 IMIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKE 180

Query: 195 ACDWGVVDKVLMSRID 210
           A ++G++DKVL   + 
Sbjct: 181 AKEYGLIDKVLEKNVK 196


>gi|87123284|ref|ZP_01079135.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. RS9917]
 gi|86169004|gb|EAQ70260.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. RS9917]
          Length = 199

 Score =  279 bits (714), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 107/192 (55%), Positives = 145/192 (75%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVEQ+ RGERS+DIYSRLL+ERI+F+   I+D +A  + AQLLFLEAE+P+KEI +Y
Sbjct: 1   MPTVVEQSGRGERSFDIYSRLLRERIIFLGTGIDDQVADALVAQLLFLEAEDPEKEIQIY 60

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDTMQ + P + T C G AASMG+ LLS G KG R ALP+ARI++H
Sbjct: 61  INSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPSARIMIH 120

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA DIE  AQ+I+ +K  LN +  ++ G+  E++ +  DRD+ +S +EA ++
Sbjct: 121 QPLGGAQGQAVDIEIQAQEILFLKDTLNGLMAEHTGQPLEKIAEDTDRDYFLSPAEAVEY 180

Query: 199 GVVDKVLMSRID 210
           G++D+V+ S  D
Sbjct: 181 GLIDRVVDSSGD 192


>gi|220928259|ref|YP_002505168.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           cellulolyticum H10]
 gi|254763787|sp|B8I8F5|CLPP_CLOCE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|219998587|gb|ACL75188.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           cellulolyticum H10]
          Length = 194

 Score =  279 bits (714), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 107/194 (55%), Positives = 151/194 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQTNRGERSYDI+SRLL +RI+ ++ ++ D  A+LI AQ+L+LEA++P K+I
Sbjct: 1   MSLVPMVVEQTNRGERSYDIFSRLLNDRIIVLSDEVNDATASLIVAQMLYLEAQDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG V +G AIYDTMQ++K  +ST CMG AASMG+ LL+AGEKG RFALPN+ I
Sbjct: 61  QFYINSPGGSVASGFAIYDTMQYVKCDVSTICMGMAASMGAFLLAAGEKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+ HA++I++ + +LN+I  +  G+  +++EK  +RD  MSA EA
Sbjct: 121 MIHQPLGGARGQATDIKIHAENILRTRDKLNKILSERTGQPLDKIEKDTERDFFMSADEA 180

Query: 196 CDWGVVDKVLMSRI 209
             +G++D +++ R 
Sbjct: 181 KAYGIIDDIMVRRK 194


>gi|209517482|ref|ZP_03266323.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           sp. H160]
 gi|209502136|gb|EEA02151.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           sp. H160]
          Length = 218

 Score =  279 bits (714), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 114/204 (55%), Positives = 152/204 (74%)

Query: 6   CAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF 65
                     LGLVP V+EQ+ RGER+YDIYSRLL+ERIVF+ G + +  A+LI AQLLF
Sbjct: 1   MPSSYPSVSALGLVPTVIEQSGRGERAYDIYSRLLRERIVFLVGPVNEQSASLIVAQLLF 60

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           LE+ENP K+I  YINSPGG V  G+AIYDTMQFIKP +ST C G AASMG+ LL+AG++G
Sbjct: 61  LESENPDKDICFYINSPGGSVYDGLAIYDTMQFIKPEVSTLCTGFAASMGTFLLTAGQRG 120

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
            R+ALPNARI++HQPSGG  G A+D+E  A++++ ++ RLN +  +  G++ EE+ +  D
Sbjct: 121 KRYALPNARIMIHQPSGGGQGTAADVEIQAKEVLYVRARLNAMMAERTGRSIEEISRDTD 180

Query: 186 RDHIMSASEACDWGVVDKVLMSRI 209
           RD+ MSA EA D+G++D VL +R 
Sbjct: 181 RDNFMSALEARDYGLIDDVLEARA 204


>gi|313673004|ref|YP_004051115.1| ATP-dependent clp protease proteolytic subunit clpp
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939760|gb|ADR18952.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 195

 Score =  279 bits (714), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 110/191 (57%), Positives = 149/191 (78%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+EQT RGER YDIYSRLLK+RI+F+   I+D +A  I AQ+LFLEAE+P+K+I LY
Sbjct: 5   IPYVIEQTGRGERVYDIYSRLLKDRIIFLGTAIDDTVANSIVAQMLFLEAEDPKKDIYLY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGV+T+G+AI+DTM +IKP +ST C+GQAASMG++LL+ G KG RFALPN RI++H
Sbjct: 65  INSPGGVITSGLAIFDTMNYIKPDVSTICIGQAASMGAVLLACGAKGKRFALPNTRIMIH 124

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GGF GQA DIE  A++I+++K ++NEI  +   K  E+++   DRD  MSA EA  +
Sbjct: 125 QPLGGFQGQAKDIEIQAKEILRLKSKINEILAERTSKPIEQIDADCDRDFFMSAEEAKAY 184

Query: 199 GVVDKVLMSRI 209
           G++D+V+  R 
Sbjct: 185 GLIDEVIEKRA 195


>gi|73666834|ref|YP_302850.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ehrlichia
           canis str. Jake]
 gi|108935919|sp|Q3YSQ3|CLPP_EHRCJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|72393975|gb|AAZ68252.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ehrlichia
           canis str. Jake]
          Length = 200

 Score =  279 bits (714), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 137/200 (68%), Positives = 174/200 (87%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT+RGER+YDIYSRLLKERI+F+TG IED MA+L+ AQL+FLEAENP+KEI
Sbjct: 1   MTLVPMVVEQTSRGERAYDIYSRLLKERIIFITGPIEDQMASLVVAQLVFLEAENPEKEI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG++IYDTMQ+IKP +ST C+GQAASMGSLLL+AGE GMR+ALPN+RI
Sbjct: 61  CMYINSPGGVVTAGLSIYDTMQYIKPKVSTLCLGQAASMGSLLLAAGEPGMRYALPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGGF GQA+DIE HA++I+ IK RLN+IYVK+ G+   EV   ++RD+ M A +A
Sbjct: 121 MIHQPSGGFQGQATDIEIHAKEILDIKSRLNDIYVKHTGRDLPEVVANMERDNFMRAEKA 180

Query: 196 CDWGVVDKVLMSRIDIEEKS 215
            D+G++DKV+  R+DIEE +
Sbjct: 181 KDFGIIDKVIEKRLDIEESN 200


>gi|148238406|ref|YP_001223793.1| protease subunit of ATP-dependent Clp protease [Synechococcus sp.
           WH 7803]
 gi|147846945|emb|CAK22496.1| Protease subunit of ATP-dependent Clp protease [Synechococcus sp.
           WH 7803]
          Length = 229

 Score =  279 bits (714), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 102/191 (53%), Positives = 146/191 (76%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G++P VVEQ+ RG+R++DIYSRLL+ERI+F+   ++D +A  + AQ+LFLEAE+P+K+I 
Sbjct: 29  GVLPTVVEQSGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDIQ 88

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VTAG+AIYDTMQ + P + T C G AASMG+ LLS G KG R ALPNARI+
Sbjct: 89  VYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIM 148

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA DIE  A++I+ +K  LN +  ++ G+  +++ +  DRD+ MS ++A 
Sbjct: 149 IHQPMGGAQGQAVDIEIQAKEILFLKETLNGLMAEHTGQPLDKIAEDTDRDNFMSPAQAV 208

Query: 197 DWGVVDKVLMS 207
           D+G++D+V+ S
Sbjct: 209 DYGLIDRVVDS 219


>gi|303229413|ref|ZP_07316203.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
           atypica ACS-134-V-Col7a]
 gi|303231336|ref|ZP_07318070.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302513932|gb|EFL55940.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302515949|gb|EFL57901.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
           atypica ACS-134-V-Col7a]
          Length = 197

 Score =  279 bits (714), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 118/196 (60%), Positives = 156/196 (79%), Gaps = 1/196 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP+VVEQ  RGERSYDIYSRLLK+RI+F+ G I+D++A  + AQ+LFLEAE+P K+I LY
Sbjct: 3   VPIVVEQGERGERSYDIYSRLLKDRIIFLGGPIDDNVANAVIAQMLFLEAEDPDKDIHLY 62

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGVVTAGMAIYDTMQ+IKP +ST C+G AASMG++LL+AG KG RFALP+AR+++H
Sbjct: 63  INSPGGVVTAGMAIYDTMQYIKPDVSTICVGSAASMGAVLLTAGAKGKRFALPHARVMIH 122

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQAS+IE HA++I++++  LN I     G+  E V +  DRD+ MSA +A ++
Sbjct: 123 QPLGGVQGQASEIEIHAREILRMREELNGILAARSGQDIEVVARDTDRDNFMSAQDAVEY 182

Query: 199 GVVDKVLMSRIDIEEK 214
           G++D+VL  R  +E K
Sbjct: 183 GLIDEVLT-RDTLESK 197


>gi|170078453|ref|YP_001735091.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. PCC 7002]
 gi|169886122|gb|ACA99835.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. PCC 7002]
          Length = 198

 Score =  279 bits (714), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 104/190 (54%), Positives = 146/190 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+E + RGER++DIYSRLL+ERIVF+  Q+ D +A LI AQLLFLEA++P+K+I L
Sbjct: 1   MIPTVIESSGRGERAFDIYSRLLRERIVFLGTQVNDEIANLIVAQLLFLEADDPEKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AGM I+DTM  ++P + T C+G AASMG+ LLSAG KG R +LPN+RI++
Sbjct: 61  YINSPGGSVSAGMGIFDTMNQVRPDVCTICIGLAASMGAFLLSAGAKGKRMSLPNSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+ +K +LN+    + G+  E++E   DRD  MSA+EA D
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYLKGKLNQHLADHTGQPLEKIEIDTDRDFFMSAAEAKD 180

Query: 198 WGVVDKVLMS 207
           +G++D+V+  
Sbjct: 181 YGLIDQVIER 190


>gi|187935559|ref|YP_001887076.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum B str. Eklund 17B]
 gi|226706444|sp|B2TPB9|CLPP_CLOBB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|187723712|gb|ACD24933.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           botulinum B str. Eklund 17B]
          Length = 199

 Score =  279 bits (714), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 117/199 (58%), Positives = 156/199 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT+RGERSYDI+SRLLKERI+ ++G++ D  + LI +QLLFLE+E+P K+I
Sbjct: 1   MSLVPMVVEQTSRGERSYDIFSRLLKERIIMLSGEVNDDSSNLIVSQLLFLESEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGG +TAGMAIYDTMQ+IKP +ST C+G AASMG+ LLS+G  G R+ALPNA I
Sbjct: 61  SIYINSPGGSITAGMAIYDTMQYIKPDVSTICVGMAASMGAFLLSSGANGKRYALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DI+ HA  I+KIK  LN+I  +N  +  E +E  ++RD+ M+A EA
Sbjct: 121 MIHQPLGGFQGQATDIQIHANRILKIKESLNKILSENTNQPLEVIEADVERDNFMTADEA 180

Query: 196 CDWGVVDKVLMSRIDIEEK 214
             +G+VDKV+      ++K
Sbjct: 181 KTYGLVDKVITKNETGKDK 199


>gi|254520131|ref|ZP_05132187.1| endopeptidase Clp [Clostridium sp. 7_2_43FAA]
 gi|226913880|gb|EEH99081.1| endopeptidase Clp [Clostridium sp. 7_2_43FAA]
          Length = 198

 Score =  279 bits (714), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 114/192 (59%), Positives = 153/192 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT+RGERSYDI+SRLLK+RI+ ++G+I D  + L+ +QLLFLE+E+P K+I
Sbjct: 1   MSLVPMVVEQTSRGERSYDIFSRLLKDRIIMLSGEINDTTSNLVVSQLLFLESEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +TAGMAIYDTMQ+IKP +ST C+G AASMGS LLS+G KG RF LPN+ I
Sbjct: 61  HLYINSPGGSITAGMAIYDTMQYIKPDVSTICIGMAASMGSFLLSSGAKGKRFVLPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+D + HA+ I+KIK  LN I  +N  +  E+++  ++RD+ M+A EA
Sbjct: 121 MIHQPLGGFQGQATDFDIHARRIIKIKESLNRILSENTNQPLEKIKTDVERDYFMTAEEA 180

Query: 196 CDWGVVDKVLMS 207
            ++G+VDKV+  
Sbjct: 181 MNYGLVDKVITK 192


>gi|188585728|ref|YP_001917273.1| ATP-dependent Clp protease proteolytic subunit ClpP [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|259585960|sp|B2A158|CLPP_NATTJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|179350415|gb|ACB84685.1| ATP-dependent Clp protease proteolytic subunit ClpP [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 197

 Score =  279 bits (714), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 113/195 (57%), Positives = 150/195 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+PMV+EQTNRGERSYDIYSRLLK+RI+F+   I D +A  + AQ+LFLE+E+P K+I
Sbjct: 1   MNLIPMVIEQTNRGERSYDIYSRLLKDRIIFIGTGINDDIANSVIAQMLFLESEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG V AG+AIYDTMQ+I+  +ST C+G AASMG++LL+AG +G RF LPN+RI
Sbjct: 61  HLYINSPGGHVHAGLAIYDTMQYIRSDVSTICVGMAASMGAVLLAAGNEGKRFCLPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +LHQP GG  GQA+D+E HA++I+K K RLN+I   + G+  E++ K  DRD  MS+ EA
Sbjct: 121 MLHQPMGGAQGQAADVEIHAREIMKTKERLNQILAHHTGQPVEQISKDTDRDFFMSSEEA 180

Query: 196 CDWGVVDKVLMSRID 210
             +GV+D VL    +
Sbjct: 181 QKYGVIDDVLKRPPE 195


>gi|91785004|ref|YP_560210.1| ATP-dependent Clp protease proteolytic subunit ClpP [Burkholderia
           xenovorans LB400]
 gi|116243097|sp|Q13UT1|CLPP1_BURXL RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|91688958|gb|ABE32158.1| ATP-dependent Clp protease proteolytic subunit ClpP [Burkholderia
           xenovorans LB400]
          Length = 215

 Score =  279 bits (714), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 113/206 (54%), Positives = 153/206 (74%)

Query: 6   CAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF 65
                     LGLVP V+EQ+ RGER+YDIYSRLL+ERIVF+ G + +  A++I AQLLF
Sbjct: 1   MHSSYPTITGLGLVPTVIEQSGRGERAYDIYSRLLRERIVFLVGPVNEQSASVIVAQLLF 60

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           LE+ENP K+IS YINSPGG V  G+AIYDTMQFIKP +ST C G AASMG+ LL+AG++G
Sbjct: 61  LESENPDKDISFYINSPGGSVYDGLAIYDTMQFIKPEVSTLCTGFAASMGTFLLTAGQRG 120

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
            R+ALPNARI++HQPSGG  G A+D+E  A++++ ++ RLN +  +  G++ EE+ +  D
Sbjct: 121 KRYALPNARIMIHQPSGGSQGTAADVEIQAKEVLYLRERLNAMMAERTGRSIEEIARDTD 180

Query: 186 RDHIMSASEACDWGVVDKVLMSRIDI 211
           RD+ MSA  A  +G+VD+VL +R  +
Sbjct: 181 RDNFMSAHAAKTYGLVDEVLETRAAL 206


>gi|239977100|sp|P0CAU1|CLPP_CAUCR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|239977114|sp|B8GX16|CLPP_CAUCN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
          Length = 209

 Score =  279 bits (714), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 150/208 (72%), Positives = 178/208 (85%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
            D     + LVPMVVEQT+RGER++DI+SRLLKERI+F+TG +ED MA+LICAQLLFLE+
Sbjct: 2   YDPVSTAMNLVPMVVEQTSRGERAFDIFSRLLKERIIFLTGPVEDGMASLICAQLLFLES 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI++YINSPGGVVTAG+AIYDTMQ+IK P+ST CMG AASMGSLLL+AG  G R 
Sbjct: 62  ENPKKEIAMYINSPGGVVTAGLAIYDTMQYIKSPVSTVCMGMAASMGSLLLAAGAAGQRI 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPNARI++HQPSGGF GQASDIERHA+DI+K KRRLNEIYVK+CG+TYEEVE+TLDRDH
Sbjct: 122 SLPNARIMVHQPSGGFRGQASDIERHAEDIIKTKRRLNEIYVKHCGRTYEEVERTLDRDH 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIEEKSK 216
            MSA EA  WG+VD V  SR   E  ++
Sbjct: 182 FMSADEAKAWGLVDHVYDSRDAAEAGAE 209


>gi|260589157|ref|ZP_05855070.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Blautia
           hansenii DSM 20583]
 gi|331082573|ref|ZP_08331698.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|260540577|gb|EEX21146.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Blautia
           hansenii DSM 20583]
 gi|330400551|gb|EGG80181.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 193

 Score =  279 bits (714), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 112/193 (58%), Positives = 147/193 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT+RGER+YDIYSRLLK+RI+F+  ++ D  A LI AQLLFLE+E+P K+I
Sbjct: 1   MSLVPYVIEQTSRGERNYDIYSRLLKDRIIFLGEEVTDVSANLIAAQLLFLESEDPGKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGM IYDTMQ+IK  +ST CMG AASMG+ LL+ G KG R ALPNA I
Sbjct: 61  HLYINSPGGSVTAGMVIYDTMQYIKCDVSTICMGLAASMGAFLLAGGAKGKRMALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I+  AQ I+K + +LN I  +N G+T E + +  +RD+ M+A EA
Sbjct: 121 MIHQPSGGAQGQATEIDIVAQQILKTRHKLNSILAQNTGQTLETIARDTERDNYMTAQEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D V+  R
Sbjct: 181 MAYGLIDSVIEHR 193


>gi|146277488|ref|YP_001167647.1| ATP-dependent Clp protease proteolytic subunit [Rhodobacter
           sphaeroides ATCC 17025]
 gi|166214703|sp|A4WSH8|CLPP_RHOS5 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|145555729|gb|ABP70342.1| Endopeptidase Clp [Rhodobacter sphaeroides ATCC 17025]
          Length = 210

 Score =  279 bits (714), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 132/209 (63%), Positives = 178/209 (85%), Gaps = 1/209 (0%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           KD  D+++  LVPMVVEQT+RGER+YDI+SR+LKERI+F++G + D M++LICAQLLFLE
Sbjct: 2   KDPIDLYMNTLVPMVVEQTSRGERAYDIFSRMLKERIIFLSGPVHDGMSSLICAQLLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AENP KEI++YINSPGGVVT+G++IYDTMQ+I+P +ST  +GQAASMGSLLL+AGEKGMR
Sbjct: 62  AENPSKEIAMYINSPGGVVTSGLSIYDTMQYIRPKVSTLVIGQAASMGSLLLTAGEKGMR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           F+LPN+R+++HQPSGG+ GQA+DI  HA++  K+KRRLNEIYVK+ G+  + VE  L+RD
Sbjct: 122 FSLPNSRVMVHQPSGGYQGQATDIMIHARETEKLKRRLNEIYVKHTGQDLDTVEAALERD 181

Query: 188 HIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           + MSA +A  WG++D++L SR   ++ +K
Sbjct: 182 NFMSAEDAKAWGLIDEILESRGKTDDTAK 210


>gi|75906770|ref|YP_321066.1| ATP-dependent Clp protease proteolytic subunit ClpP [Anabaena
           variabilis ATCC 29413]
 gi|110816454|sp|Q3MFR5|CLPP1_ANAVT RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|75700495|gb|ABA20171.1| ATP-dependent Clp protease proteolytic subunit ClpP [Anabaena
           variabilis ATCC 29413]
          Length = 204

 Score =  279 bits (714), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 103/189 (54%), Positives = 146/189 (77%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P+V+EQ+ RGER++DIYSRLL+ERI+F+  Q++ ++A LI AQLLFL+AE+P+K+I LY
Sbjct: 3   IPIVIEQSGRGERAFDIYSRLLRERIIFLGQQVDSNLANLIVAQLLFLDAEDPEKDIYLY 62

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAGM I+DTM+ I+P + T C G AASMG+ LLSAG KG R +LP++RI++H
Sbjct: 63  INSPGGSVTAGMGIFDTMKHIRPDVCTICTGLAASMGAFLLSAGTKGKRMSLPHSRIMIH 122

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA+DIE  A++I+  KRRLN+   ++ G+  E + +  +RD  MS  EA D+
Sbjct: 123 QPLGGAQGQATDIEIQAREILYHKRRLNDYLAEHTGQPIERIAEDTERDFFMSPDEARDY 182

Query: 199 GVVDKVLMS 207
           G++D+V+  
Sbjct: 183 GLIDQVIDR 191


>gi|291614263|ref|YP_003524420.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sideroxydans
           lithotrophicus ES-1]
 gi|291584375|gb|ADE12033.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sideroxydans
           lithotrophicus ES-1]
          Length = 208

 Score =  279 bits (714), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 119/202 (58%), Positives = 157/202 (77%)

Query: 8   KKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           K   E   +G++PMVVE + RGER+YDIYSRLLKER+VF+ G++ DH A LI AQ+LFLE
Sbjct: 7   KLMMEPQDIGMIPMVVESSGRGERAYDIYSRLLKERVVFLVGEVNDHTANLIVAQMLFLE 66

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           +ENP K+I  YINSPGG ++AGMAIYDTMQFIKP +ST C+G AASMG+ LL AG KG R
Sbjct: 67  SENPDKDIHFYINSPGGSISAGMAIYDTMQFIKPQVSTLCIGMAASMGAFLLQAGAKGKR 126

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           FALPN+ +++HQP GGF GQASDIE HA+ I+ ++ RL  +  ++ G+T EE+ +  +RD
Sbjct: 127 FALPNSTVMIHQPLGGFRGQASDIEIHARYILSLRERLYALMAQHTGRTVEEIARDSERD 186

Query: 188 HIMSASEACDWGVVDKVLMSRI 209
           + +SA EA ++G+VD+VL  RI
Sbjct: 187 NFLSAKEAVEYGLVDQVLDKRI 208


>gi|205375127|ref|ZP_03227918.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           coahuilensis m4-4]
          Length = 198

 Score =  279 bits (714), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 110/199 (55%), Positives = 154/199 (77%), Gaps = 1/199 (0%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RI+ +   I+D++A  I AQLLFLE ENP+K+I
Sbjct: 1   MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVAQLLFLETENPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG +TAGMAIYDTMQ+IKP + T C+G AASMG+ LL+AGE G RFALPN+ +
Sbjct: 61  SLYINSPGGSITAGMAIYDTMQYIKPKVQTICIGMAASMGAFLLAAGEPGKRFALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN I  +  G+  + + +  DRD+ M+A  A
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILFLREKLNTILSERTGQPLDVIAQDTDRDNFMTAERA 180

Query: 196 CDWGVVDKVLMSRIDIEEK 214
            ++G++DK++  R DI++K
Sbjct: 181 LEYGLIDKIIT-RHDIDKK 198


>gi|209523050|ref|ZP_03271607.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Arthrospira
           maxima CS-328]
 gi|209496637|gb|EDZ96935.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Arthrospira
           maxima CS-328]
          Length = 200

 Score =  279 bits (713), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 101/192 (52%), Positives = 146/192 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+EQ+ RGER++DIYSRLL++RIVF+  Q+   +A LI AQLLFL+AE+P+K+I L
Sbjct: 1   MIPTVIEQSGRGERAFDIYSRLLRDRIVFLGTQVNSDVANLIVAQLLFLDAEDPEKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+ I+DTM  I+P + T C+G AASMG+ LLSAG KG R++LP++RI++
Sbjct: 61  YINSPGGGVNAGLGIFDTMNHIRPDVCTVCLGLAASMGAFLLSAGAKGKRYSLPHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+ +KR+LNE   K+  +    +E+  +RD  MSA +A +
Sbjct: 121 HQPLGGAQGQATDIEIQAREILYLKRQLNENLAKHTEQPLSRIEEDTERDFFMSAEDAVN 180

Query: 198 WGVVDKVLMSRI 209
           +G++D+V+  R 
Sbjct: 181 YGLIDQVISRRP 192


>gi|327398620|ref|YP_004339489.1| ATP-dependent Clp protease proteolytic subunit [Hippea maritima DSM
           10411]
 gi|327181249|gb|AEA33430.1| ATP-dependent Clp protease proteolytic subunit [Hippea maritima DSM
           10411]
          Length = 205

 Score =  279 bits (713), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 108/193 (55%), Positives = 158/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+V+E+T +GER+YDIYSRLLK+RI+ + G+I D ++ +I +QLLFLE+E+P+K+I
Sbjct: 1   MNLVPIVIEKTPQGERAYDIYSRLLKDRIIMLNGEINDDVSNVIVSQLLFLESEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG+AIYDTMQ+IK  ++T C+G AASMG+LLL++G KG R++LP++RI
Sbjct: 61  FLYINSPGGSVTAGLAIYDTMQYIKCDVTTICIGSAASMGALLLASGTKGKRYSLPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG SGQA++IE HA++I+++K+ LNEI  K+ GK  + +EK  +RD+ M   EA
Sbjct: 121 MIHQPLGGISGQATEIEIHAKEILRLKKLLNEILAKHTGKRLKTIEKDTERDYFMDTKEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++DK++ SR
Sbjct: 181 LAYGIIDKIIYSR 193


>gi|227872170|ref|ZP_03990538.1| endopeptidase Clp [Oribacterium sinus F0268]
 gi|227841983|gb|EEJ52245.1| endopeptidase Clp [Oribacterium sinus F0268]
          Length = 208

 Score =  279 bits (713), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 108/207 (52%), Positives = 151/207 (72%)

Query: 8   KKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           K  S    +  +P V++ T+RGERSYDI+SRLL ERIVF+  ++    A+L+ AQLLFLE
Sbjct: 2   KNFSYPQNITTIPYVIQSTSRGERSYDIFSRLLNERIVFLGDEVNSDTASLVIAQLLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           +E+P K+ISLYINSPGG VTAGM IYDTMQ+IK  +ST C+G AASMG+ LL+ G KG R
Sbjct: 62  SEDPDKDISLYINSPGGSVTAGMGIYDTMQYIKCDVSTICVGMAASMGAFLLAGGAKGKR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
             LPNA +++HQPSGG  GQA++I+  A+ I++ K+ L +I  +NC + +E+V    +RD
Sbjct: 122 MILPNAEVMIHQPSGGAQGQATEIQITAEWILRTKKNLAKILAENCNQPFEKVMADTERD 181

Query: 188 HIMSASEACDWGVVDKVLMSRIDIEEK 214
           + MSA +A ++G+VD +   R D+E+K
Sbjct: 182 YWMSAEQALEYGLVDHIFQKRTDLEKK 208


>gi|238926240|ref|ZP_04658000.1| endopeptidase Clp [Selenomonas flueggei ATCC 43531]
 gi|238885920|gb|EEQ49558.1| endopeptidase Clp [Selenomonas flueggei ATCC 43531]
          Length = 197

 Score =  279 bits (713), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 111/196 (56%), Positives = 155/196 (79%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MVVE + RGER+YDIYSRLLKERI+F+ G I+D +A +I AQ+LFLE+E+P K+I LYIN
Sbjct: 1   MVVENSGRGERAYDIYSRLLKERIIFLGGPIDDSVANVIVAQMLFLESEDPDKDIHLYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGGVVTAG+AIYDTMQ+IKP +ST C+GQAASMGS+LL+AG KG R+ALP+ARI++HQP
Sbjct: 61  SPGGVVTAGLAIYDTMQYIKPDVSTICVGQAASMGSILLTAGAKGKRYALPHARIMIHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            GG  GQ++DI+  A++I++++   NEI  ++ G+   ++    +RD+ MSA EA ++G+
Sbjct: 121 LGGAQGQSTDIQIQAKEILRLREVGNEILARHTGQDTAKINIDTERDNFMSAEEAKEYGL 180

Query: 201 VDKVLMSRIDIEEKSK 216
           +D+V++   D    SK
Sbjct: 181 IDEVVLRPKDTSADSK 196


>gi|17231175|ref|NP_487723.1| ATP-dependent Clp protease proteolytic subunit [Nostoc sp. PCC
           7120]
 gi|75909809|ref|YP_324105.1| ATP-dependent Clp protease proteolytic subunit ClpP [Anabaena
           variabilis ATCC 29413]
 gi|21759070|sp|Q8YQX8|CLPP2_ANASP RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|17132816|dbj|BAB75382.1| ATP-dependent Clp protease proteolytic subunit [Nostoc sp. PCC
           7120]
 gi|75703534|gb|ABA23210.1| ATP-dependent Clp protease proteolytic subunit ClpP [Anabaena
           variabilis ATCC 29413]
          Length = 232

 Score =  279 bits (713), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 107/196 (54%), Positives = 147/196 (75%), Gaps = 1/196 (0%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            +VPMVVEQ+  GER++DIYSRLL+ERI+F+   I+D +A  I AQLLFL+AE+ +K+I 
Sbjct: 28  NIVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPIDDAVANTIVAQLLFLDAEDSEKDIQ 87

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG V AGMAIYDT+Q I+P + T C G AASMG+ LL+AG KG R +LP++RI+
Sbjct: 88  LYINSPGGSVYAGMAIYDTIQQIRPDVVTICFGLAASMGAFLLTAGTKGKRMSLPDSRIM 147

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA DIE  A++I+ IK +LN++   + G+  E +E   DRD  MSA EA 
Sbjct: 148 IHQPLGGAQGQAIDIEIQAREILYIKAQLNQLLANHTGQPLERIEADTDRDFFMSAEEAK 207

Query: 197 DWGVVDKVLMSRIDIE 212
           ++G++D+V+ SR ++ 
Sbjct: 208 NYGLIDQVI-SRQNLP 222


>gi|301154977|emb|CBW14440.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Haemophilus parainfluenzae T3T1]
          Length = 188

 Score =  279 bits (713), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 123/188 (65%), Positives = 155/188 (82%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MVVEQT+RGERSYDIYSRLLKER++F++G++ED MA LI AQLLFLE+E+P+K+I++YIN
Sbjct: 1   MVVEQTSRGERSYDIYSRLLKERVIFLSGEVEDRMANLIVAQLLFLESEDPKKDINIYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGG VTAGMAIYDTMQFIKP + T C+GQA SMG+ LL+ G  G R ALPNAR+++HQP
Sbjct: 61  SPGGSVTAGMAIYDTMQFIKPDVRTLCIGQACSMGAFLLAGGTAGKRAALPNARVMIHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            GGF GQASDI+ HAQ+I+KIK+ LNE    + G++ E +EK  DRD+ MSA EA  +G+
Sbjct: 121 LGGFRGQASDIQIHAQEILKIKQTLNERLAFHTGQSIERIEKDTDRDNFMSAEEAKAYGL 180

Query: 201 VDKVLMSR 208
           VD VL+ R
Sbjct: 181 VDDVLIKR 188


>gi|159028981|emb|CAO87442.1| clpP1 [Microcystis aeruginosa PCC 7806]
          Length = 199

 Score =  279 bits (713), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 102/190 (53%), Positives = 144/190 (75%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+E T RGER++DIYSRLL+ERIVF+  ++   +A LI AQLLFLEAE+P+K+I L
Sbjct: 1   MIPTVIETTGRGERAFDIYSRLLRERIVFLGQEVTSDLANLIVAQLLFLEAEDPEKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG+ I+DTM  I+P +ST C+G AASMG+ LLSAG+ G R +LPN+RI++
Sbjct: 61  YINSPGGSVSAGLGIFDTMNQIRPDVSTICIGLAASMGAFLLSAGKPGKRMSLPNSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+ +K+ LN+    + GK  + + +  +RD  MSA EA D
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYLKQLLNQHLASHTGKPLDLIAEDTERDFFMSAEEALD 180

Query: 198 WGVVDKVLMS 207
           +G++D+V+  
Sbjct: 181 YGLIDQVIDR 190


>gi|126741244|ref|ZP_01756923.1| Protease subunit of ATP-dependent Clp protease [Roseobacter sp.
           SK209-2-6]
 gi|126717649|gb|EBA14372.1| Protease subunit of ATP-dependent Clp protease [Roseobacter sp.
           SK209-2-6]
          Length = 210

 Score =  279 bits (713), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 128/204 (62%), Positives = 171/204 (83%), Gaps = 1/204 (0%)

Query: 10  DSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           D  + ++  LVPMVVEQT+RGER+YDI+SRLLKERI+F+ G + D M++LI AQLL LEA
Sbjct: 3   DPRETYMNTLVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMSSLIVAQLLHLEA 62

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP KEIS+YINSPGGVVT+G++IYDTMQ+IKP +ST  +GQAASMGSLLL+AGE GMRF
Sbjct: 63  ENPSKEISMYINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLTAGEAGMRF 122

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPN+R+++HQPSGGF GQA+DI  HA++ +K+KRRLNEIYVK+ G+  ++VE  L+RD+
Sbjct: 123 SLPNSRVMVHQPSGGFQGQATDIMIHAEETLKLKRRLNEIYVKHTGQELDKVEAALERDN 182

Query: 189 IMSASEACDWGVVDKVLMSRIDIE 212
            MS  EA ++G++D+++ +R   E
Sbjct: 183 FMSPEEAKEFGLIDEIVENRAKGE 206


>gi|167032910|ref|YP_001668141.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas putida
           GB-1]
 gi|189082463|sp|B0KJG6|CLPP_PSEPG RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166859398|gb|ABY97805.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
           putida GB-1]
          Length = 213

 Score =  279 bits (713), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 119/192 (61%), Positives = 155/192 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+EQ+ RGER+YDIYSRLLKER++F+ G +ED+MA L+ AQ+LFLEAENP K+I 
Sbjct: 18  GLVPMVIEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLVVAQMLFLEAENPDKDIH 77

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+ LL+AG KG R  LPN+R++
Sbjct: 78  LYINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLTAGAKGKRHCLPNSRVM 137

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQA+DI+ HAQ+I+ IK RLNE+   + G+  E +++  +RD+ MSAS A 
Sbjct: 138 IHQPLGGFQGQATDIQIHAQEILSIKARLNELLAYHTGQDLETIQRDTERDNFMSASRAA 197

Query: 197 DWGVVDKVLMSR 208
           ++G++D V   R
Sbjct: 198 EYGLIDSVYDKR 209


>gi|269798318|ref|YP_003312218.1| ATP-dependent Clp protease proteolytic subunit ClpP [Veillonella
           parvula DSM 2008]
 gi|269094947|gb|ACZ24938.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
           parvula DSM 2008]
          Length = 197

 Score =  279 bits (713), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 118/196 (60%), Positives = 156/196 (79%), Gaps = 1/196 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP+VVEQ  RGERSYDIYSRLLK+RI+F+ G I+D++A  + AQ+LFLEAE+P K+I LY
Sbjct: 3   VPIVVEQGERGERSYDIYSRLLKDRIIFLGGPIDDNVANAVIAQMLFLEAEDPDKDIHLY 62

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGVVTAGMAIYDTMQ+IKP +ST C+G AASMG++LL+AG KG R+ALP+ARI++H
Sbjct: 63  INSPGGVVTAGMAIYDTMQYIKPDVSTICVGSAASMGAVLLTAGTKGKRYALPHARIMIH 122

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQAS+IE HA++I++++  LN I     G+  E V +  DRD+ MSA +A ++
Sbjct: 123 QPLGGVQGQASEIEIHAREILRMREELNGILASRSGQDIEVVARDTDRDNFMSAQDAVEY 182

Query: 199 GVVDKVLMSRIDIEEK 214
           G++D+VL  R  +E K
Sbjct: 183 GLIDEVLT-RESVESK 197


>gi|255658239|ref|ZP_05403648.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mitsuokella
           multacida DSM 20544]
 gi|260849549|gb|EEX69556.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mitsuokella
           multacida DSM 20544]
          Length = 199

 Score =  279 bits (713), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 114/196 (58%), Positives = 157/196 (80%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MVVE++N GER+YDIYSRLLK+RI+F+ G I+D +A  + AQLLFLE+E+P K+I LYIN
Sbjct: 1   MVVERSNTGERAYDIYSRLLKDRIIFLGGPIDDAVANTVVAQLLFLESEDPDKDIHLYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGGVVTAG+AIYDTMQ+IKP +ST C+GQAASMG+LLL+AG KG R+ALPNARI++HQP
Sbjct: 61  SPGGVVTAGLAIYDTMQYIKPDVSTICIGQAASMGALLLTAGAKGKRYALPNARIMIHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            GG  GQ++DI+  A++I +I+  +N+I V++ GK  E V +  +RD+ M+A EA  +G+
Sbjct: 121 LGGAQGQSTDIQIQAREIQRIREVINDILVESTGKDRETVVQDTERDNFMTAEEAKAYGL 180

Query: 201 VDKVLMSRIDIEEKSK 216
           VD+V+   +   +KS+
Sbjct: 181 VDEVITRPVKKGKKSE 196


>gi|296157194|ref|ZP_06840030.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           sp. Ch1-1]
 gi|295892530|gb|EFG72312.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           sp. Ch1-1]
          Length = 215

 Score =  279 bits (713), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 113/206 (54%), Positives = 153/206 (74%)

Query: 6   CAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF 65
                     LGLVP V+EQ+ RGER+YDIYSRLL+ERIVF+ G + +  A++I AQLLF
Sbjct: 1   MHSSYPTITGLGLVPTVIEQSGRGERAYDIYSRLLRERIVFLVGPVNEQSASVIVAQLLF 60

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           LE+ENP K+IS YINSPGG V  G+AIYDTMQFIKP +ST C G AASMG+ LL+AG++G
Sbjct: 61  LESENPDKDISFYINSPGGSVYDGLAIYDTMQFIKPEVSTLCTGFAASMGTFLLTAGQRG 120

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
            R+ALPNARI++HQPSGG  G A+D+E  A++++ ++ RLN +  +  G++ EE+ +  D
Sbjct: 121 KRYALPNARIMIHQPSGGSQGTAADVEIQAKEVLYLRERLNAMMAERTGRSIEEIARDTD 180

Query: 186 RDHIMSASEACDWGVVDKVLMSRIDI 211
           RD+ MSA  A  +G+VD+VL +R  +
Sbjct: 181 RDNFMSAHAAKTYGLVDEVLETRAAL 206


>gi|295396804|ref|ZP_06806937.1| ATP-dependent Clp protease proteolytic subunit [Aerococcus viridans
           ATCC 11563]
 gi|294974956|gb|EFG50650.1| ATP-dependent Clp protease proteolytic subunit [Aerococcus viridans
           ATCC 11563]
          Length = 198

 Score =  279 bits (713), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 104/198 (52%), Positives = 150/198 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQ++RGER+YDIYSRLLK+RI+ ++G+  D +A  I AQLLFL+A++P K+I
Sbjct: 1   MNLVPTVIEQSSRGERAYDIYSRLLKDRIIMLSGEFNDDLANSIIAQLLFLDAQDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +T+GMAIYDTMQF+   + T  MG AASMGS + +AG KG RFALPNA I
Sbjct: 61  YLYINSPGGSITSGMAIYDTMQFVHADVQTIVMGMAASMGSFIAAAGTKGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQP GG  GQA++IE  A+ I+K K ++N +Y +  G+  E +E+  DRD+ ++A EA
Sbjct: 121 LIHQPLGGAQGQATEIEIAARHILKTKEKMNRLYSEMTGQPVEVIERDTDRDNWLTAEEA 180

Query: 196 CDWGVVDKVLMSRIDIEE 213
            ++G++D+++    ++E+
Sbjct: 181 LEYGLLDQIMTKNDELEK 198


>gi|163731525|ref|ZP_02138972.1| Clp protease, putative [Roseobacter litoralis Och 149]
 gi|161394979|gb|EDQ19301.1| Clp protease, putative [Roseobacter litoralis Och 149]
          Length = 208

 Score =  279 bits (713), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 128/207 (61%), Positives = 172/207 (83%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           KD  + ++ LVPMVVEQT+RGER+YDI+SRLLKERI+F+ G + D M++LI AQLL LEA
Sbjct: 2   KDPIETYMNLVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMSSLIVAQLLHLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           +NP KEIS+YINSPGGVVT+G++IYDTMQ+IKP +ST  +GQAASMGSLLL+AGE GMRF
Sbjct: 62  DNPAKEISMYINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLTAGEAGMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPN+RI++HQPSGG+ GQA+DI  HA +  K+K RLNEIYVK+ G+T ++VE  L+RD+
Sbjct: 122 SLPNSRIMVHQPSGGYQGQATDIMIHAAETQKLKDRLNEIYVKHTGQTLKKVENALERDN 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIEEKS 215
            MS  EA D+G++D+++ +R   + ++
Sbjct: 182 FMSPEEAKDFGLIDEIVENRSKDDAET 208


>gi|329114674|ref|ZP_08243433.1| ATP-dependent Clp protease proteolytic subunit 1 [Acetobacter
           pomorum DM001]
 gi|326696154|gb|EGE47836.1| ATP-dependent Clp protease proteolytic subunit 1 [Acetobacter
           pomorum DM001]
          Length = 237

 Score =  279 bits (713), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 131/214 (61%), Positives = 171/214 (79%), Gaps = 1/214 (0%)

Query: 4   EGCAKKDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQ 62
            G   +D  ++F   LVPMVVEQT+RGER++DIYSRLL+ERI+F+TG + D +A+LI AQ
Sbjct: 19  SGMRDRDPVEIFSNALVPMVVEQTSRGERAFDIYSRLLQERIIFLTGPVYDQVASLISAQ 78

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           LL+LE+ NP KEIS YINSPGGVV+AG+AIYDTMQ+I+ P+ST C+GQAASMGSLLL+ G
Sbjct: 79  LLYLESVNPNKEISFYINSPGGVVSAGLAIYDTMQYIRSPVSTVCIGQAASMGSLLLAGG 138

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
           EKG RFALPNAR+++HQPSGG  GQASDIE  A++I+ I+++LNEIY ++ G+T EE+E+
Sbjct: 139 EKGRRFALPNARVMVHQPSGGAQGQASDIEIQAREILIIRQKLNEIYREHTGRTLEEIEQ 198

Query: 183 TLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
            L+RD  MSA EA  +G+VD+V+      E   K
Sbjct: 199 KLERDTYMSAHEAQSFGIVDEVISHHKATETGKK 232


>gi|116071740|ref|ZP_01469008.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. BL107]
 gi|116065363|gb|EAU71121.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. BL107]
          Length = 224

 Score =  279 bits (713), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 101/194 (52%), Positives = 145/194 (74%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G +P VVEQ+ RG+R++DIYSRLL+ERI+F+   ++D +A  + AQ+LFLEAE+P+K+I 
Sbjct: 24  GPLPTVVEQSGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDIQ 83

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+NSPGG VTAG+AIYDTMQ + P + T C G AASMG+ LLS G KG R ALPNARI+
Sbjct: 84  IYVNSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIM 143

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA DIE  A++I+ +K  LN +  ++ G+   ++ +  DRD+ +S +EA 
Sbjct: 144 IHQPLGGAQGQAVDIEIQAKEILFLKETLNGLMAEHTGQPLAKISEDTDRDYFLSPAEAV 203

Query: 197 DWGVVDKVLMSRID 210
           ++G++D+V+ S  D
Sbjct: 204 EYGLIDRVVDSSGD 217


>gi|15837789|ref|NP_298477.1| ATP-dependent Clp protease proteolytic subunit [Xylella fastidiosa
           9a5c]
 gi|18203347|sp|Q9PE41|CLPP_XYLFA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|9106157|gb|AAF83997.1|AE003953_1 ATP-dependent Clp protease proteolytic subunit [Xylella fastidiosa
           9a5c]
          Length = 208

 Score =  279 bits (713), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 124/201 (61%), Positives = 164/201 (81%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           D     L LVPMVVEQT+RGER+YDIYSRLLKER++F+ G I+D+MA LI AQLLFLEAE
Sbjct: 2   DDVTKALNLVPMVVEQTSRGERAYDIYSRLLKERLIFLVGPIDDYMANLIVAQLLFLEAE 61

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP+K+I++YINSPGGVVTAGMAIYDTMQ+IKP +ST C+GQAASMG+LLL++G  G R+A
Sbjct: 62  NPEKDINIYINSPGGVVTAGMAIYDTMQYIKPAVSTICVGQAASMGALLLASGASGKRYA 121

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPN+R+++HQP GGF GQA+DI+ HA++I+ ++ RLNEI  K+ G++ E +    +RD+ 
Sbjct: 122 LPNSRVMIHQPLGGFQGQATDIDIHAREILALRARLNEILAKHTGQSLETIAHDTERDNF 181

Query: 190 MSASEACDWGVVDKVLMSRID 210
            SA +A  +G+VD+VL  R +
Sbjct: 182 KSAVDAQAYGLVDQVLGQRPE 202


>gi|255261268|ref|ZP_05340610.1| Clp protease [Thalassiobium sp. R2A62]
 gi|255103603|gb|EET46277.1| Clp protease [Thalassiobium sp. R2A62]
          Length = 209

 Score =  279 bits (713), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 127/206 (61%), Positives = 170/206 (82%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           D  + ++ LVPMVVEQT+RGER+YDI+SRLLKERI+F+ G + D M+ LI AQLL LEAE
Sbjct: 3   DPVETYMNLVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMSQLIVAQLLHLEAE 62

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP KEIS+YINSPGGVVT+G++IYDTMQ+IKP +ST  +GQAASMGSLLL+AGEKGMRF+
Sbjct: 63  NPSKEISMYINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLTAGEKGMRFS 122

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPN+R+++HQPSGG+ GQA+DI  HA +  K+K RLN IYV++ G+T ++VE  L+RD+ 
Sbjct: 123 LPNSRVMVHQPSGGYQGQATDIMIHAAETQKLKDRLNSIYVRHTGQTLKKVEAALERDNF 182

Query: 190 MSASEACDWGVVDKVLMSRIDIEEKS 215
           MSA +A DWG++D+++ +R   ++  
Sbjct: 183 MSAEDAKDWGLIDEIVENRNKEDDAK 208


>gi|300866516|ref|ZP_07111206.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oscillatoria
           sp. PCC 6506]
 gi|300335473|emb|CBN56366.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oscillatoria
           sp. PCC 6506]
          Length = 229

 Score =  279 bits (713), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 106/193 (54%), Positives = 146/193 (75%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
              +VPMV+EQ+  GER++DIYSRLL+ERIVF+   ++D +A  I AQLLFL+AE+P+K+
Sbjct: 23  PSNVVPMVLEQSGMGERAFDIYSRLLRERIVFLGTPVDDQVADSIVAQLLFLDAEDPEKD 82

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I LYINSPGG VTAGMAIYDTMQ ++P + T C G AASMG+ L++AG  G R +LP++R
Sbjct: 83  IQLYINSPGGSVTAGMAIYDTMQQVRPDVVTICYGLAASMGAFLMAAGAAGKRMSLPSSR 142

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQP GG  GQA DIE  A++I+  KR+LNE+   + G+  E +E   +RD  MSA+E
Sbjct: 143 IMIHQPLGGAQGQAVDIEIQAKEILYHKRKLNELLAHHTGQPLERIEADTERDFFMSAAE 202

Query: 195 ACDWGVVDKVLMS 207
           A D+G+VD+V++ 
Sbjct: 203 AKDYGLVDQVILK 215


>gi|283852376|ref|ZP_06369646.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
           sp. FW1012B]
 gi|283572224|gb|EFC20214.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
           sp. FW1012B]
          Length = 204

 Score =  279 bits (713), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 115/200 (57%), Positives = 159/200 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P+V+E T R ER+YDIYSRLL++RI+ +   ++DH+A LICAQLLFLE+E+P+KEI
Sbjct: 1   MPTIPIVIETTGRSERAYDIYSRLLRDRIILLGSAVDDHVANLICAQLLFLESEDPEKEI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG VTAG+AIYDTMQ++ P +ST CMGQAASMG+LLL AG  GMR+ALP++RI
Sbjct: 61  FMYINSPGGSVTAGLAIYDTMQYVLPKVSTLCMGQAASMGALLLCAGATGMRYALPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DI+ HA++I++I+  LNEI  ++ G+  E+V    DRD+ M+A EA
Sbjct: 121 MIHQPMGGFQGQATDIDIHAREILRIRESLNEIMARHTGQDIEKVRVDTDRDYFMNADEA 180

Query: 196 CDWGVVDKVLMSRIDIEEKS 215
             +G++DKVL SR  + +K 
Sbjct: 181 VTYGLIDKVLTSREPVAKKE 200


>gi|282850557|ref|ZP_06259936.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
           parvula ATCC 17745]
 gi|294792182|ref|ZP_06757330.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
           sp. 6_1_27]
 gi|294794047|ref|ZP_06759184.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
           sp. 3_1_44]
 gi|282580050|gb|EFB85454.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
           parvula ATCC 17745]
 gi|294455617|gb|EFG23989.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
           sp. 3_1_44]
 gi|294457412|gb|EFG25774.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
           sp. 6_1_27]
          Length = 197

 Score =  279 bits (713), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 118/196 (60%), Positives = 156/196 (79%), Gaps = 1/196 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP+VVEQ  RGERSYDIYSRLLK+RI+F+ G I+D++A  + AQ+LFLEAE+P K+I LY
Sbjct: 3   VPIVVEQGERGERSYDIYSRLLKDRIIFLGGPIDDNVANAVIAQMLFLEAEDPDKDIHLY 62

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGVVTAGMAIYDTMQ+IKP +ST C+G AASMG++LL+AG KG R+ALP+ARI++H
Sbjct: 63  INSPGGVVTAGMAIYDTMQYIKPDVSTICVGSAASMGAVLLTAGTKGKRYALPHARIMIH 122

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQAS+IE HA++I++++  LN I     G+  E V +  DRD+ MSA +A ++
Sbjct: 123 QPLGGVQGQASEIEIHAREILRMREELNGILASRSGQDIEVVARDTDRDNFMSAQDAVEY 182

Query: 199 GVVDKVLMSRIDIEEK 214
           G++D+VL  R  +E K
Sbjct: 183 GLIDEVLT-REPVESK 197


>gi|77463765|ref|YP_353269.1| ATP-dependent Clp protease proteolytic subunit [Rhodobacter
           sphaeroides 2.4.1]
 gi|126462595|ref|YP_001043709.1| ATP-dependent Clp protease proteolytic subunit [Rhodobacter
           sphaeroides ATCC 17029]
 gi|221639635|ref|YP_002525897.1| ATP-dependent Clp protease proteolytic subunit [Rhodobacter
           sphaeroides KD131]
 gi|124013827|sp|Q3J1G6|CLPP_RHOS4 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166214702|sp|A3PKS1|CLPP_RHOS1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|254763798|sp|B9KJU9|CLPP_RHOSK RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|77388183|gb|ABA79368.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rhodobacter
           sphaeroides 2.4.1]
 gi|126104259|gb|ABN76937.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rhodobacter
           sphaeroides ATCC 17029]
 gi|221160416|gb|ACM01396.1| ATP-dependent Clp protease proteolytic subunit [Rhodobacter
           sphaeroides KD131]
          Length = 210

 Score =  279 bits (713), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 133/209 (63%), Positives = 178/209 (85%), Gaps = 1/209 (0%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           KD  D+++  LVPMVVEQT+RGER+YDIYSR+LKERI+F++G + D M++LICAQLLFLE
Sbjct: 2   KDPIDLYMNTLVPMVVEQTSRGERAYDIYSRMLKERIIFLSGPVHDGMSSLICAQLLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AENP KEI++YINSPGGVVT+G++IYDTMQ+I+P +ST  +GQAASMGSLLL+AGEKGMR
Sbjct: 62  AENPSKEIAMYINSPGGVVTSGLSIYDTMQYIRPKVSTLVIGQAASMGSLLLTAGEKGMR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           F+LPN+R+++HQPSGG+ GQA+DI  HA++  K+KRRLNEIYV++ G+  E VE  L+RD
Sbjct: 122 FSLPNSRVMVHQPSGGYQGQATDIMIHARETEKLKRRLNEIYVRHTGQDLETVEAALERD 181

Query: 188 HIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           + MSA +A  WG++D++L SR   ++ +K
Sbjct: 182 NFMSAEDAKAWGLIDEILESRNRPDDTAK 210


>gi|318043033|ref|ZP_07974989.1| ATP-dependent Clp protease proteolytic subunit ClpP [Synechococcus
           sp. CB0101]
          Length = 194

 Score =  279 bits (713), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 102/189 (53%), Positives = 143/189 (75%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P VVEQ+ RGER++DIYSRLL+ERI+F+   I+D +A  + AQLLFLEAE+P+K+I +
Sbjct: 1   MLPTVVEQSGRGERAFDIYSRLLRERIIFLGTGIDDQVADALVAQLLFLEAEDPEKDIQI 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG VTAG+AIYDTMQ + P + T C G AASMG+ LLS G KG R ALPNARI++
Sbjct: 61  YVNSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA DIE  A++I+ +K  LN +  ++ G+  E++ +  DRD+ +S +EA  
Sbjct: 121 HQPLGGAQGQAVDIEIQAKEILYLKDTLNGLMAEHTGQPLEKIAEDTDRDYFLSPAEAVQ 180

Query: 198 WGVVDKVLM 206
           +G++D+V+ 
Sbjct: 181 YGLIDRVVT 189


>gi|15645413|ref|NP_207587.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           26695]
 gi|108563204|ref|YP_627520.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           HPAG1]
 gi|207108488|ref|ZP_03242650.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           HPKX_438_CA4C1]
 gi|2493736|sp|P56156|CLPP_HELPY RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|185177747|pdb|2ZL0|A Chain A, Crystal Structure Of H.Pylori Clpp
 gi|185177748|pdb|2ZL0|B Chain B, Crystal Structure Of H.Pylori Clpp
 gi|185177749|pdb|2ZL0|C Chain C, Crystal Structure Of H.Pylori Clpp
 gi|185177750|pdb|2ZL0|D Chain D, Crystal Structure Of H.Pylori Clpp
 gi|185177751|pdb|2ZL0|E Chain E, Crystal Structure Of H.Pylori Clpp
 gi|185177752|pdb|2ZL0|F Chain F, Crystal Structure Of H.Pylori Clpp
 gi|185177753|pdb|2ZL0|G Chain G, Crystal Structure Of H.Pylori Clpp
 gi|185177754|pdb|2ZL0|H Chain H, Crystal Structure Of H.Pylori Clpp
 gi|185177755|pdb|2ZL0|I Chain I, Crystal Structure Of H.Pylori Clpp
 gi|185177756|pdb|2ZL0|J Chain J, Crystal Structure Of H.Pylori Clpp
 gi|185177757|pdb|2ZL0|K Chain K, Crystal Structure Of H.Pylori Clpp
 gi|185177758|pdb|2ZL0|L Chain L, Crystal Structure Of H.Pylori Clpp
 gi|185177759|pdb|2ZL0|M Chain M, Crystal Structure Of H.Pylori Clpp
 gi|185177760|pdb|2ZL0|N Chain N, Crystal Structure Of H.Pylori Clpp
 gi|185177761|pdb|2ZL2|A Chain A, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 gi|185177762|pdb|2ZL2|B Chain B, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 gi|185177763|pdb|2ZL2|C Chain C, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 gi|185177764|pdb|2ZL2|D Chain D, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 gi|185177765|pdb|2ZL2|E Chain E, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 gi|185177766|pdb|2ZL2|F Chain F, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 gi|185177767|pdb|2ZL2|G Chain G, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 gi|185177768|pdb|2ZL2|H Chain H, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 gi|185177769|pdb|2ZL2|I Chain I, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 gi|185177770|pdb|2ZL2|J Chain J, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 gi|185177771|pdb|2ZL2|K Chain K, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 gi|185177772|pdb|2ZL2|L Chain L, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 gi|185177773|pdb|2ZL2|M Chain M, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 gi|185177774|pdb|2ZL2|N Chain N, Crystal Structure Of H.Pylori Clpp In Complex With The
           Peptide Nvlgftq
 gi|2313923|gb|AAD07842.1| ATP-dependent clp protease proteolytic component (clpP)
           [Helicobacter pylori 26695]
 gi|107836977|gb|ABF84846.1| ATP-dependent clp protease proteolytic component [Helicobacter
           pylori HPAG1]
          Length = 196

 Score =  279 bits (713), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 113/196 (57%), Positives = 155/196 (79%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
            +G +P V+E T+RGERSYDIYSRLLK+RIV ++G+I D +A+ I AQLLFLEAE+P+K+
Sbjct: 1   MMGYIPYVIENTDRGERSYDIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKD 60

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I LYINSPGGV+T+G++IYDTM FI+P +ST C+GQAASMG+ LLS G KG RF+LP++R
Sbjct: 61  IGLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSR 120

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQP GG  GQASDIE  + +I+++K  +N I  +N G++ E++ K  DRD  MSA E
Sbjct: 121 IMIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKE 180

Query: 195 ACDWGVVDKVLMSRID 210
           A ++G++DKVL   + 
Sbjct: 181 AKEYGLIDKVLQKNVK 196


>gi|294083692|ref|YP_003550449.1| protease subunit of ATP-dependent Clp protease [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292663264|gb|ADE38365.1| Protease subunit of ATP-dependent Clp protease [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 216

 Score =  279 bits (713), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 128/208 (61%), Positives = 172/208 (82%)

Query: 8   KKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
            K + D    LVPMVVEQTNRGERSYDI+SRLLKERI+F+ G ++D  A+L+C+QLLFLE
Sbjct: 7   AKSNFDPMANLVPMVVEQTNRGERSYDIFSRLLKERIIFLNGPVDDTTASLVCSQLLFLE 66

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           +ENP K+IS+YINSPGG+VT+G+AIYDTM++I+P +ST CMGQAASMGSLLL AG  G R
Sbjct: 67  SENPTKDISMYINSPGGIVTSGLAIYDTMEYIRPDVSTVCMGQAASMGSLLLMAGAAGKR 126

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           ++LPNARI+ HQPSGGFSGQASDIE HA++I+ +++RLN +YVK+ GKT ++VEK ++RD
Sbjct: 127 YSLPNARIMTHQPSGGFSGQASDIEIHAREILDLRKRLNGMYVKHTGKTLKDVEKIMERD 186

Query: 188 HIMSASEACDWGVVDKVLMSRIDIEEKS 215
             M+A +A  +G++D+V+  R   +++ 
Sbjct: 187 TFMTAEDAQKFGLIDEVVEKRPAGKDEK 214


>gi|289548353|ref|YP_003473341.1| ATP-dependent Clp protease proteolytic subunit ClpP [Thermocrinis
           albus DSM 14484]
 gi|289181970|gb|ADC89214.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermocrinis
           albus DSM 14484]
          Length = 199

 Score =  279 bits (713), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 117/197 (59%), Positives = 160/197 (81%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           +++   LVP+V+EQT RGER+YDIYSRLL++RIV +   I+DH+A LI AQLLFLEA++P
Sbjct: 2   KEILNQLVPIVIEQTPRGERAYDIYSRLLQDRIVLLGYPIDDHVANLIVAQLLFLEAQDP 61

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+I +YINSPGG VTAGMAIYDTMQ+IKP + T C+GQAASM ++LL+AG KG R++LP
Sbjct: 62  EKDIYMYINSPGGSVTAGMAIYDTMQYIKPDVVTICIGQAASMAAVLLAAGAKGKRYSLP 121

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           ++RI++HQP GG SGQA+DI  HA++I +IK  LNEI  K+ G+   +VE+ ++RD+ MS
Sbjct: 122 HSRIMIHQPMGGISGQATDIIIHAEEIKRIKHMLNEIIAKHTGQPLSKVEQDVERDYFMS 181

Query: 192 ASEACDWGVVDKVLMSR 208
           A EA ++G+VDKV+  R
Sbjct: 182 AYEAMEYGIVDKVIEKR 198


>gi|257865163|ref|ZP_05644816.1| peptidase S14 [Enterococcus casseliflavus EC30]
 gi|257871487|ref|ZP_05651140.1| peptidase S14 [Enterococcus casseliflavus EC10]
 gi|257874785|ref|ZP_05654438.1| peptidase S14 [Enterococcus casseliflavus EC20]
 gi|325571575|ref|ZP_08147075.1| ATP-dependent Clp protease, protease subunit [Enterococcus
           casseliflavus ATCC 12755]
 gi|257799097|gb|EEV28149.1| peptidase S14 [Enterococcus casseliflavus EC30]
 gi|257805651|gb|EEV34473.1| peptidase S14 [Enterococcus casseliflavus EC10]
 gi|257808951|gb|EEV37771.1| peptidase S14 [Enterococcus casseliflavus EC20]
 gi|325156051|gb|EGC68247.1| ATP-dependent Clp protease, protease subunit [Enterococcus
           casseliflavus ATCC 12755]
          Length = 196

 Score =  279 bits (713), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 108/192 (56%), Positives = 149/192 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQ++RGER+YDIYSRLLK+RI+ ++GQ+ D +A  I AQLLFL+A++ +K+I
Sbjct: 1   MNLIPTVIEQSSRGERAYDIYSRLLKDRIIMLSGQVTDDLANSIIAQLLFLDAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG+AI+DTM FIK  + T  MG AASMGS LL+AGEKG RFALPNA I
Sbjct: 61  YLYINSPGGSVTAGLAIFDTMNFIKADVQTIVMGMAASMGSFLLTAGEKGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+  + RLN+I  +  G+  E +E+  DRD+ M+A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAARHILATRERLNKILSERTGQPIEVIERDTDRDNFMTAQEA 180

Query: 196 CDWGVVDKVLMS 207
            D+G++D+++ S
Sbjct: 181 KDYGLIDEIMES 192


>gi|257460311|ref|ZP_05625414.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           gracilis RM3268]
 gi|257442376|gb|EEV17516.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           gracilis RM3268]
          Length = 194

 Score =  279 bits (713), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 116/190 (61%), Positives = 152/190 (80%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+EQT+RGERSYDIYSRLLK+RIV ++G+I+D +A+ I AQLLFLEAE+P K+I L
Sbjct: 2   VIPYVIEQTSRGERSYDIYSRLLKDRIVMLSGEIDDAVASSIVAQLLFLEAEDPDKDIYL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G +IYDTM +IKP +ST C+GQAASMG+ LLS G KG R+ALPN+RI++
Sbjct: 62  YINSPGGVVTSGFSIYDTMNYIKPDVSTICIGQAASMGAFLLSCGAKGKRYALPNSRIMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+++K  LN I  +N GK   +VEK  DRD  MSA +A  
Sbjct: 122 HQPLGGAQGQATDIEIQAKEILRMKEILNGILSQNSGKDLAQVEKDTDRDFFMSAEDAVQ 181

Query: 198 WGVVDKVLMS 207
           +G++D+VL  
Sbjct: 182 YGLIDQVLQK 191


>gi|315453779|ref|YP_004074049.1| ATP-dependent clp protease proteolytic subunit [Helicobacter felis
           ATCC 49179]
 gi|315132831|emb|CBY83459.1| ATP-dependent clp protease proteolytic subunit [Helicobacter felis
           ATCC 49179]
          Length = 197

 Score =  279 bits (713), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 108/192 (56%), Positives = 151/192 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P V+E+T RGERSYDIYSRLLK+RIV ++G+I D +A+ I AQLLFLEAE+P+K+I
Sbjct: 1   MNHIPFVIEKTGRGERSYDIYSRLLKDRIVLLSGEINDAVASSIVAQLLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGG VT+G +IYDTM +I P I T C+GQAASMG+ LLS G KG RF+LP++RI
Sbjct: 61  NLYINSPGGSVTSGFSIYDTMNYIHPDICTICIGQAASMGAFLLSCGAKGKRFSLPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQAS++  + ++I+++K  LN+I   N G+  +++E+  DRD  MSA EA
Sbjct: 121 MIHQPLGGTQGQASNLAIYTKEILRLKDLLNQIMATNTGQPLDKIEQDTDRDFFMSALEA 180

Query: 196 CDWGVVDKVLMS 207
            ++G+VD+VL+ 
Sbjct: 181 KEYGLVDEVLVK 192


>gi|254469734|ref|ZP_05083139.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudovibrio
           sp. JE062]
 gi|211961569|gb|EEA96764.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudovibrio
           sp. JE062]
          Length = 211

 Score =  279 bits (713), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 138/195 (70%), Positives = 173/195 (88%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQTNRGER+YDI+SRLLKERI+F+TG +ED MATL+C+QLL+LEAENP KEI+
Sbjct: 11  SLVPMVVEQTNRGERAYDIFSRLLKERIIFLTGPVEDTMATLVCSQLLYLEAENPNKEIA 70

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGVVT+G+AIYDTMQFI+P IST C+GQAASMGSLLL+AGEKGMRF+LPN+R++
Sbjct: 71  LYINSPGGVVTSGLAIYDTMQFIRPKISTLCIGQAASMGSLLLAAGEKGMRFSLPNSRVM 130

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGGF GQA+DI  HAQ+I+K+KRRLNEIYV + G+T E VE+ L+RD+ MSA  A 
Sbjct: 131 VHQPSGGFRGQAADIMLHAQEILKLKRRLNEIYVSHTGQTLEAVEEALERDNFMSADAAK 190

Query: 197 DWGVVDKVLMSRIDI 211
           ++G++D V+ +R  +
Sbjct: 191 EFGLIDNVIENRESL 205


>gi|289577854|ref|YP_003476481.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Thermoanaerobacter italicus Ab9]
 gi|297544142|ref|YP_003676444.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|289527567|gb|ADD01919.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter italicus Ab9]
 gi|296841917|gb|ADH60433.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 195

 Score =  279 bits (713), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 111/190 (58%), Positives = 149/190 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQTNRGERSYDI+SRLLK+RIVF+  +I D  A+L+ AQLLFLEAE+P K+I
Sbjct: 1   MSLVPIVVEQTNRGERSYDIFSRLLKDRIVFLGEEINDTTASLVIAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +TAG AIYDTMQ+IKP + T C+G AASM + LL+AG KG RFALPN+ I
Sbjct: 61  WLYINSPGGSITAGFAIYDTMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+ HA+ I+K++ +L+ I  +N G+  E+++   +RD  M A +A
Sbjct: 121 MIHQPLGGMHGQATDIKIHAERILKLRDKLDRILAENTGQPIEKIKADTERDFFMDAEDA 180

Query: 196 CDWGVVDKVL 205
             +G++D+VL
Sbjct: 181 KAYGIIDEVL 190


>gi|239907453|ref|YP_002954194.1| ATP-dependent Clp protease proteolytic subunit [Desulfovibrio
           magneticus RS-1]
 gi|259585949|sp|C4XH03|CLPP_DESMR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|239797319|dbj|BAH76308.1| ATP-dependent Clp protease proteolytic subunit [Desulfovibrio
           magneticus RS-1]
          Length = 202

 Score =  279 bits (713), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 114/200 (57%), Positives = 161/200 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P+V+E T R ER+YDIYSRLL++RI+ +   ++D++A LICAQLLFLE+E+P+KEI
Sbjct: 1   MATIPIVIETTGRTERAYDIYSRLLRDRIILLGSAVDDYVANLICAQLLFLESEDPEKEI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVV+AG+AIYDTMQ++ PP+ST C+GQAASMG+LLL AG  GMR+ALP++RI
Sbjct: 61  FMYINSPGGVVSAGLAIYDTMQYVMPPVSTLCLGQAASMGALLLCAGATGMRYALPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG+ GQA+DIE HA++  + +  LNEI  K+ G++ E ++   +RD+ MSA EA
Sbjct: 121 MIHQPSGGYQGQATDIEIHAKETRRTRETLNEIMAKHTGQSMERIQVDTERDNFMSAEEA 180

Query: 196 CDWGVVDKVLMSRIDIEEKS 215
             +G++DKVL SR  +E+K 
Sbjct: 181 VAYGLIDKVLTSRERLEKKD 200


>gi|254432364|ref|ZP_05046067.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanobium sp.
           PCC 7001]
 gi|197626817|gb|EDY39376.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanobium sp.
           PCC 7001]
          Length = 235

 Score =  279 bits (713), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 103/189 (54%), Positives = 145/189 (76%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G++P VVEQ+ +GER++DIYSRLL+ERI+F+   I+D +A  + AQLLFLEAE+P+K+I 
Sbjct: 36  GVLPTVVEQSGKGERAFDIYSRLLRERIIFLGTGIDDAVADALVAQLLFLEAEDPEKDIQ 95

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VTAG+AIYDTMQ + P + T C G AASMG+ LLS G KG R ALP+ARI+
Sbjct: 96  IYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPSARIM 155

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA DIE  A++I+ +K  LN +  ++ G+  E++ +  DRD+ +S +EA 
Sbjct: 156 IHQPLGGAQGQAVDIEIQAKEILFLKDTLNGLMAEHTGQPLEKIAEDTDRDYFLSPAEAV 215

Query: 197 DWGVVDKVL 205
           D+G++D+V+
Sbjct: 216 DYGLIDRVV 224


>gi|220909724|ref|YP_002485035.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
           sp. PCC 7425]
 gi|219866335|gb|ACL46674.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
           sp. PCC 7425]
          Length = 236

 Score =  279 bits (713), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 108/223 (48%), Positives = 155/223 (69%), Gaps = 8/223 (3%)

Query: 1   MSFEGCAKKDS-EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQ------IED 53
           + +   A  +   +    +VPMVVEQ+ RGER++DIYSRLL+ERI+F+ G       I+D
Sbjct: 10  LIYSLAAAAEPVSEPPRNIVPMVVEQSGRGERAFDIYSRLLRERIIFLGGGGSNGRGIDD 69

Query: 54  HMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAAS 113
            +A  I AQLLFL++E+P+++I LYINSPGG VTAGMAIYDT+Q +   + T C G AAS
Sbjct: 70  ALADSIVAQLLFLDSEDPERDIYLYINSPGGSVTAGMAIYDTIQHVHADVCTICFGLAAS 129

Query: 114 MGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC 173
           MG+ LL+ G  G R ALP++RI++HQP GG  GQA DIE  A++I+  KR+LNE+   + 
Sbjct: 130 MGAFLLAGGAAGKRMALPHSRIMIHQPLGGAQGQAVDIEIQAKEILYHKRKLNELLAHHT 189

Query: 174 GKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           G+ +E +E   +RD  MSA EA ++G+VD+V+  R ++  +S+
Sbjct: 190 GQPFERIEADTERDFFMSAEEAKNYGLVDQVIT-RQNLPSRSE 231


>gi|91977364|ref|YP_570023.1| endopeptidase Clp [Rhodopseudomonas palustris BisB5]
 gi|123721781|sp|Q135W7|CLPP_RHOPS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|91683820|gb|ABE40122.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Rhodopseudomonas palustris BisB5]
          Length = 214

 Score =  278 bits (712), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 136/202 (67%), Positives = 174/202 (86%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  + ++ LVPMVVEQTNRGER+YDI+SRLLKERI+F+TG +ED M+TL+ AQLLFLEA
Sbjct: 2   RDPVETYMNLVPMVVEQTNRGERAYDIFSRLLKERIIFLTGPVEDGMSTLVVAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEIS+YINSPGGVVT+G+AIYDTMQFI+PP+ST C GQAASMGSLLL+AG K MRF
Sbjct: 62  ENPKKEISMYINSPGGVVTSGLAIYDTMQFIRPPVSTLCTGQAASMGSLLLAAGHKDMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPNARI++HQPSGGF GQA+DI  HAQ+I+ +K+RLNEIYV + G+TY+ +E  L+RD 
Sbjct: 122 SLPNARIMVHQPSGGFQGQATDIMLHAQEILNLKKRLNEIYVHHTGQTYKAIEDALERDK 181

Query: 189 IMSASEACDWGVVDKVLMSRID 210
            ++A  A ++G+VDKV+  R +
Sbjct: 182 FLTAEMAREFGIVDKVIDKRAE 203


>gi|254421271|ref|ZP_05034989.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. PCC 7335]
 gi|196188760|gb|EDX83724.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. PCC 7335]
          Length = 269

 Score =  278 bits (712), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 107/191 (56%), Positives = 146/191 (76%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            ++PMVVEQ+ RGER++DIYSRLL+ERIVF+   + D +A  I AQLLFL+AE+P+K++ 
Sbjct: 67  SMLPMVVEQSGRGERAFDIYSRLLRERIVFLGTPVMDDIADSIVAQLLFLDAEDPEKDVQ 126

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGMAIYDTMQ I+P + T C G AASMG+ LLS G KG R +LP+ARI+
Sbjct: 127 LYINSPGGSVTAGMAIYDTMQQIRPDVVTICFGLAASMGAFLLSGGAKGKRMSLPSARIM 186

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  GQ++DIE  A++I+ +K+RLNE+   + G+    +E   +RD  MSA EA 
Sbjct: 187 IHQPSGGAQGQSADIEIQAREILYLKKRLNEMLADHTGQDISRIEADTERDFFMSAEEAK 246

Query: 197 DWGVVDKVLMS 207
           ++G++D+V+  
Sbjct: 247 EYGLIDQVVSR 257


>gi|146341127|ref|YP_001206175.1| ATP-dependent Clp protease proteolytic subunit [Bradyrhizobium sp.
           ORS278]
 gi|146193933|emb|CAL77950.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           [Bradyrhizobium sp. ORS278]
          Length = 210

 Score =  278 bits (712), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 136/204 (66%), Positives = 172/204 (84%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  + ++ LVPMVVEQTNRGER+YDI+SRLLKERI+FVTG +ED MATLI AQLLFLEA
Sbjct: 2   RDPVETYMNLVPMVVEQTNRGERAYDIFSRLLKERIIFVTGPVEDGMATLIVAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI++YINSPGGVVT+G+AIYDTMQFI+P +ST C GQAASMGSLLL AG K MRF
Sbjct: 62  ENPKKEIAMYINSPGGVVTSGLAIYDTMQFIRPAVSTLCTGQAASMGSLLLCAGHKDMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPN+RI++HQPSGGF GQA+DI  HAQ+I+ +K+RLNEIYVK+ G+ Y+ +E  L+RD 
Sbjct: 122 SLPNSRIMVHQPSGGFQGQATDIMLHAQEILSLKKRLNEIYVKHTGQPYKAIEDALERDK 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIE 212
            ++A  A ++G++DKVL  R +  
Sbjct: 182 FLTAEAAQEFGLIDKVLDKRPEDP 205


>gi|161511142|ref|NP_539791.2| ATP-dependent Clp protease proteolytic subunit [Brucella melitensis
           bv. 1 str. 16M]
 gi|225852610|ref|YP_002732843.1| ATP-dependent Clp protease proteolytic subunit [Brucella melitensis
           ATCC 23457]
 gi|256044767|ref|ZP_05447671.1| ATP-dependent Clp protease proteolytic subunit [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|256113666|ref|ZP_05454477.1| ATP-dependent Clp protease proteolytic subunit [Brucella melitensis
           bv. 3 str. Ether]
 gi|256263897|ref|ZP_05466429.1| ATP-dependent Clp protease proteolytic subunit [Brucella melitensis
           bv. 2 str. 63/9]
 gi|260565631|ref|ZP_05836115.1| ATP-dependent Clp protease proteolytic subunit [Brucella melitensis
           bv. 1 str. 16M]
 gi|265991190|ref|ZP_06103747.1| ATP-dependent Clp protease proteolytic subunit [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|265995026|ref|ZP_06107583.1| ATP-dependent Clp protease proteolytic subunit [Brucella melitensis
           bv. 3 str. Ether]
 gi|21759068|sp|Q8YHC8|CLPP_BRUME RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|254763784|sp|C0RJ81|CLPP_BRUMB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|225640975|gb|ACO00889.1| ATP-dependent Clp protease proteolytic subunit [Brucella melitensis
           ATCC 23457]
 gi|260151699|gb|EEW86793.1| ATP-dependent Clp protease proteolytic subunit [Brucella melitensis
           bv. 1 str. 16M]
 gi|262766139|gb|EEZ11928.1| ATP-dependent Clp protease proteolytic subunit [Brucella melitensis
           bv. 3 str. Ether]
 gi|263001974|gb|EEZ14549.1| ATP-dependent Clp protease proteolytic subunit [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|263094029|gb|EEZ17963.1| ATP-dependent Clp protease proteolytic subunit [Brucella melitensis
           bv. 2 str. 63/9]
 gi|326409129|gb|ADZ66194.1| ATP-dependent Clp protease proteolytic subunit [Brucella melitensis
           M28]
 gi|326538837|gb|ADZ87052.1| ATP-dependent Clp protease proteolytic subunit [Brucella melitensis
           M5-90]
          Length = 209

 Score =  278 bits (712), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 147/208 (70%), Positives = 182/208 (87%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  +  + LVPMVVEQTNRGER+YDI+SRLLKERI+FV G +ED M+ L+CAQLLFLEA
Sbjct: 2   RDPIETVMNLVPMVVEQTNRGERAYDIFSRLLKERIIFVNGPVEDGMSMLVCAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI++YINSPGGVVT+GMAIYDTMQFI+PP+ST CMGQAASMGSLLL+AG  G R+
Sbjct: 62  ENPKKEINMYINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGATGHRY 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           AL NARI++HQPSGGF GQASDIERHAQDI+K+KRRLNEIYVK+ G+ Y+ +E+TLDRDH
Sbjct: 122 ALLNARIMVHQPSGGFQGQASDIERHAQDIIKMKRRLNEIYVKHTGRDYDTIERTLDRDH 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIEEKSK 216
            M+A EA ++G++DKV+ +R    ++SK
Sbjct: 182 FMTAQEALEFGLIDKVVEARDVSADESK 209


>gi|163851839|ref|YP_001639882.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Methylobacterium extorquens PA1]
 gi|218530631|ref|YP_002421447.1| ATP-dependent Clp protease proteolytic subunit [Methylobacterium
           chloromethanicum CM4]
 gi|240139003|ref|YP_002963478.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           [Methylobacterium extorquens AM1]
 gi|254561598|ref|YP_003068693.1| ATP-dependent Clp protease proteolytic subunit [Methylobacterium
           extorquens DM4]
 gi|226706461|sp|A9W5F5|CLPP_METEP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|254763796|sp|B7KNT0|CLPP_METC4 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|163663444|gb|ABY30811.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Methylobacterium extorquens PA1]
 gi|218522934|gb|ACK83519.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Methylobacterium chloromethanicum CM4]
 gi|240008975|gb|ACS40201.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           [Methylobacterium extorquens AM1]
 gi|254268876|emb|CAX24837.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           [Methylobacterium extorquens DM4]
          Length = 208

 Score =  278 bits (712), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 131/203 (64%), Positives = 170/203 (83%), Gaps = 1/203 (0%)

Query: 9   KDSEDVF-LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           +D  D F   LVPMVVEQ++RGER++DIYSRLL+ERI+F+TG +ED  A+LI AQLLFLE
Sbjct: 2   RDPVDYFHNSLVPMVVEQSSRGERAFDIYSRLLRERIIFLTGPVEDQGASLIVAQLLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AENP+KEIS YINSPGGVVT+G++IYDTMQFI+ P++T C+GQAASMGSLLL+AGE G R
Sbjct: 62  AENPKKEISFYINSPGGVVTSGLSIYDTMQFIRCPVTTLCVGQAASMGSLLLAAGEAGHR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           FALPNARI++HQPSGGF GQA+DI  HA++I  +K+RLNEIYVK+ G+ YE + + L+RD
Sbjct: 122 FALPNARIMVHQPSGGFQGQATDILIHAREIEALKKRLNEIYVKHTGREYETIHQALERD 181

Query: 188 HIMSASEACDWGVVDKVLMSRID 210
           + M+A  A ++G++D +L  R +
Sbjct: 182 NFMTADAAKEFGLIDDILHKRPE 204


>gi|320450477|ref|YP_004202573.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermus
           scotoductus SA-01]
 gi|320150646|gb|ADW22024.1| ATP-dependent Clp protease, proteolytic, subunit ClpP [Thermus
           scotoductus SA-01]
          Length = 212

 Score =  278 bits (712), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 107/190 (56%), Positives = 149/190 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+EQT RGER YDIYSRLLK+RI+F+   I+  +A +I AQLLFL+A+NP +EI L
Sbjct: 20  VIPYVIEQTARGERVYDIYSRLLKDRIIFLGTPIDSQVANIIVAQLLFLDAQNPNQEIRL 79

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+AIYDTMQF++ P+ST  +G AASM +++L+AGEKG R+ALP++++++
Sbjct: 80  YINSPGGEVDAGLAIYDTMQFVRAPVSTIVIGMAASMAAVILAAGEKGRRYALPHSKVMI 139

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  G ASDI   AQ+I+K K+ LNEI  K+ G+  E+VEK  DRD+ +SA EA +
Sbjct: 140 HQPWGGVRGTASDIAIQAQEILKAKKLLNEILAKHTGQPLEKVEKDTDRDYYLSAQEALE 199

Query: 198 WGVVDKVLMS 207
           +G++D+V+  
Sbjct: 200 YGLIDQVVTR 209


>gi|282898518|ref|ZP_06306508.1| Peptidase S14, ClpP [Raphidiopsis brookii D9]
 gi|281196684|gb|EFA71590.1| Peptidase S14, ClpP [Raphidiopsis brookii D9]
          Length = 201

 Score =  278 bits (712), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 99/190 (52%), Positives = 147/190 (77%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQ+ RGER++DIYSRLL+ERIVF+  Q++  +A LI AQLLFL++E+P+K+I +
Sbjct: 1   MIPIVIEQSGRGERAFDIYSRLLRERIVFLGQQVDSSLANLIVAQLLFLDSEDPEKDIYM 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM I+DTM+ I+P + T C G AASMG+ LLSAG KG R +LP++RI++
Sbjct: 61  YINSPGGSVTAGMGIFDTMKNIRPDVCTICTGLAASMGAFLLSAGTKGKRMSLPHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+  KR+LNE   ++ G+ ++ + +  +RD  MS  E+ +
Sbjct: 121 HQPLGGAQGQATDIEIQAREILYHKRKLNEYLAEHTGQPFDRIAEDTERDFFMSPQESRE 180

Query: 198 WGVVDKVLMS 207
           +G++D+V+  
Sbjct: 181 YGLIDQVIDR 190


>gi|115459516|ref|NP_001053358.1| Os04g0525600 [Oryza sativa Japonica Group]
 gi|113564929|dbj|BAF15272.1| Os04g0525600 [Oryza sativa Japonica Group]
 gi|215768496|dbj|BAH00725.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 309

 Score =  278 bits (712), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 119/193 (61%), Positives = 156/193 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+E T+RGER+YDI+SRLLKERIV + G I D  A+L+ AQLLFLE+ENP K + 
Sbjct: 85  GLVPMVIEHTSRGERAYDIFSRLLKERIVCIHGPITDDTASLVVAQLLFLESENPAKPVH 144

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGVVTAG+AIYDTMQ+I+ P++T C+GQAASM SLLL+AG +G R ALPNAR++
Sbjct: 145 LYINSPGGVVTAGLAIYDTMQYIRSPVTTLCIGQAASMASLLLAAGARGERRALPNARVM 204

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG SGQASDI  HA++I+K++ RLN+IY K+  +  + +E+ ++RD  M   EA 
Sbjct: 205 IHQPSGGASGQASDIAIHAKEILKVRDRLNKIYAKHTSQAIDRIEQCMERDMFMDPEEAH 264

Query: 197 DWGVVDKVLMSRI 209
           DWG++D+V+  R 
Sbjct: 265 DWGLIDEVIEHRP 277


>gi|152991609|ref|YP_001357330.1| ATP-dependent Clp protease proteolytic subunit [Sulfurovum sp.
           NBC37-1]
 gi|166214717|sp|A6Q675|CLPP_SULNB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|151423470|dbj|BAF70973.1| ATP-dependent Clp protease, proteolytic subunit [Sulfurovum sp.
           NBC37-1]
          Length = 195

 Score =  278 bits (712), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 110/192 (57%), Positives = 153/192 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P VVEQT RGERSYDIYSRLLK+RI+ ++G++ D +A+ I AQLLFLEA++P K+I
Sbjct: 1   MSYIPYVVEQTGRGERSYDIYSRLLKDRIIMLSGEVNDQVASSIVAQLLFLEAQDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGGV+T+G++++DTM +IKP I T C+GQAASMG+ LL++G KG R+ALP+ARI
Sbjct: 61  YFYINSPGGVITSGLSMFDTMNYIKPDIVTICIGQAASMGAFLLASGTKGKRYALPHARI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQ++DI+  AQ+I ++K  LNEI  +  GKT + +EK  +RD+ MSA EA
Sbjct: 121 MIHQPSGGAQGQSTDIQIQAQEIQRLKDTLNEIMAEKTGKTAKRIEKDTERDNFMSAKEA 180

Query: 196 CDWGVVDKVLMS 207
            ++G++DKVL  
Sbjct: 181 VEYGLIDKVLTK 192


>gi|123967079|ref|YP_001012160.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9515]
 gi|123201445|gb|ABM73053.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9515]
          Length = 204

 Score =  278 bits (712), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 102/202 (50%), Positives = 145/202 (71%)

Query: 6   CAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF 65
            +  +S +     +P VVEQ+ RGER++DIYSRLL+ERI+F+   I D +   + AQLLF
Sbjct: 1   MSPLESVNNTKSAIPTVVEQSGRGERAFDIYSRLLRERIIFLGTGINDQVTDSLVAQLLF 60

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           LEAE+P K+I +YINSPGG VTAG+AIYDTMQ I P + T C G AASMG+ LLS G KG
Sbjct: 61  LEAEDPDKDIQIYINSPGGSVTAGLAIYDTMQQISPDVVTICFGVAASMGAFLLSGGAKG 120

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
            R ALPN+RI++HQP GG  GQA +IE  A++I+ +K+ LN +  ++ G++ E++ +  +
Sbjct: 121 KRLALPNSRIMIHQPLGGAQGQAVEIEIQAKEILFLKKTLNSLLSEHTGQSLEKINEDTE 180

Query: 186 RDHIMSASEACDWGVVDKVLMS 207
           RD+ +S  EA  +G++DKV+ +
Sbjct: 181 RDYFLSPEEAVQYGLIDKVIKN 202


>gi|332016545|gb|EGI57426.1| Putative ATP-dependent Clp protease proteolytic subunit,
           mitochondrial [Acromyrmex echinatior]
          Length = 224

 Score =  278 bits (712), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 113/196 (57%), Positives = 158/196 (80%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
              +L  VP+VVEQ+ RGER+YDIYSRLLKERI+ + G + D +A+ + AQLLFL++E+ 
Sbjct: 8   SSRYLNFVPIVVEQSGRGERAYDIYSRLLKERIICLMGPVTDVVASAVIAQLLFLQSESS 67

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +  I LYINSPGG VTAG+ IYDTMQ++ PPIST+C+GQA SM SLLL+AG KGMR +LP
Sbjct: 68  KNPIHLYINSPGGSVTAGLGIYDTMQYVLPPISTWCVGQACSMASLLLAAGTKGMRHSLP 127

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           NARI++HQPSGG  GQA+DI+  A +I+K+K+++NE+YVK+ G+  EE+ K+++RD+ MS
Sbjct: 128 NARIMIHQPSGGVQGQATDIQIQATEILKLKQQINELYVKHTGQNLEEIAKSMERDNFMS 187

Query: 192 ASEACDWGVVDKVLMS 207
            ++A ++G++DKVL  
Sbjct: 188 PTQAKEFGIIDKVLAH 203


>gi|290969192|ref|ZP_06560717.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290780698|gb|EFD93301.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 200

 Score =  278 bits (712), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 110/189 (58%), Positives = 156/189 (82%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP+VVEQT++GERSYD+YSRL+K+RI+F++GQ+ED MA  + AQLLFLEAE+P K+I LY
Sbjct: 5   VPVVVEQTSQGERSYDLYSRLMKDRIIFLSGQVEDTMANSLIAQLLFLEAEDPDKDIYLY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGVVTAGMAIYDTMQ+IKP +ST C+G AASM S+LL+AG KG RFALP++++++H
Sbjct: 65  INSPGGVVTAGMAIYDTMQYIKPDVSTICVGSAASMASVLLAAGTKGKRFALPHSQVMIH 124

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA+DIE H ++I++++R LN I   + G+  + +EK  +RD+ ++A +A  +
Sbjct: 125 QPLGGVQGQATDIEIHTREILRVRRELNGILAAHTGQPLDVIEKDTERDNFLTAEDAKHY 184

Query: 199 GVVDKVLMS 207
           G++D++L+ 
Sbjct: 185 GLIDEILVR 193


>gi|269138347|ref|YP_003295047.1| protease subunit of ATP-dependent Clp protease [Edwardsiella tarda
           EIB202]
 gi|267984007|gb|ACY83836.1| protease subunit of ATP-dependent Clp protease [Edwardsiella tarda
           EIB202]
 gi|304558379|gb|ADM41043.1| ATP-dependent Clp protease proteolytic subunit [Edwardsiella tarda
           FL6-60]
          Length = 189

 Score =  278 bits (712), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 125/189 (66%), Positives = 157/189 (83%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MVVEQT+RGERSYDI+SRLLKERI+F+TGQ+EDHMA LI AQ+LFLEAENP+K+I LYIN
Sbjct: 1   MVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAENPEKDIHLYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMGS LL+AG +G RF LPN+R+++HQP
Sbjct: 61  SPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGSFLLAAGAQGKRFCLPNSRVMIHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            GGF GQA+DIE HA++I+ IK R+N +  K+ G+  E +E+  +RD  MSA +A ++G+
Sbjct: 121 LGGFQGQATDIEIHAKEILSIKARMNTLMAKHSGQPIEVIERDTERDRFMSAQDAVEYGL 180

Query: 201 VDKVLMSRI 209
           VD VL  R 
Sbjct: 181 VDAVLTQRA 189


>gi|29375364|ref|NP_814518.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis V583]
 gi|227517733|ref|ZP_03947782.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis TX0104]
 gi|229546606|ref|ZP_04435331.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis TX1322]
 gi|229548713|ref|ZP_04437438.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis ATCC 29200]
 gi|255971227|ref|ZP_05421813.1| peptidase S14 [Enterococcus faecalis T1]
 gi|255973850|ref|ZP_05424436.1| peptidase S14 [Enterococcus faecalis T2]
 gi|256617656|ref|ZP_05474502.1| peptidase S14 [Enterococcus faecalis ATCC 4200]
 gi|256761537|ref|ZP_05502117.1| peptidase S14 [Enterococcus faecalis T3]
 gi|256957363|ref|ZP_05561534.1| peptidase S14 [Enterococcus faecalis DS5]
 gi|256959901|ref|ZP_05564072.1| peptidase S14 [Enterococcus faecalis Merz96]
 gi|256964395|ref|ZP_05568566.1| peptidase S14 [Enterococcus faecalis HIP11704]
 gi|257083692|ref|ZP_05578053.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis Fly1]
 gi|257086127|ref|ZP_05580488.1| peptidase S14 [Enterococcus faecalis D6]
 gi|257089198|ref|ZP_05583559.1| peptidase S14 [Enterococcus faecalis CH188]
 gi|257415340|ref|ZP_05592334.1| peptidase S14 [Enterococcus faecalis AR01/DG]
 gi|257418377|ref|ZP_05595371.1| peptidase S14 [Enterococcus faecalis T11]
 gi|257421026|ref|ZP_05598016.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis X98]
 gi|293384732|ref|ZP_06630586.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis R712]
 gi|293387456|ref|ZP_06632008.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis S613]
 gi|294781490|ref|ZP_06746829.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis PC1.1]
 gi|300859735|ref|ZP_07105823.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TUSoD Ef11]
 gi|307269823|ref|ZP_07551153.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX4248]
 gi|307272582|ref|ZP_07553835.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0855]
 gi|307276252|ref|ZP_07557380.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX2134]
 gi|307284467|ref|ZP_07564629.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0860]
 gi|307289536|ref|ZP_07569481.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0109]
 gi|307296208|ref|ZP_07576036.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0411]
 gi|312900365|ref|ZP_07759676.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0470]
 gi|312904208|ref|ZP_07763370.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0635]
 gi|312908569|ref|ZP_07767512.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis DAPTO 512]
 gi|312910494|ref|ZP_07769339.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis DAPTO 516]
 gi|312951861|ref|ZP_07770750.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0102]
 gi|60389766|sp|Q837R0|CLPP_ENTFA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|29342824|gb|AAO80588.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis V583]
 gi|227074814|gb|EEI12777.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis TX0104]
 gi|229306150|gb|EEN72146.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis ATCC 29200]
 gi|229308263|gb|EEN74250.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis TX1322]
 gi|255962245|gb|EET94721.1| peptidase S14 [Enterococcus faecalis T1]
 gi|255966722|gb|EET97344.1| peptidase S14 [Enterococcus faecalis T2]
 gi|256597183|gb|EEU16359.1| peptidase S14 [Enterococcus faecalis ATCC 4200]
 gi|256682788|gb|EEU22483.1| peptidase S14 [Enterococcus faecalis T3]
 gi|256947859|gb|EEU64491.1| peptidase S14 [Enterococcus faecalis DS5]
 gi|256950397|gb|EEU67029.1| peptidase S14 [Enterococcus faecalis Merz96]
 gi|256954891|gb|EEU71523.1| peptidase S14 [Enterococcus faecalis HIP11704]
 gi|256991722|gb|EEU79024.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis Fly1]
 gi|256994157|gb|EEU81459.1| peptidase S14 [Enterococcus faecalis D6]
 gi|256998010|gb|EEU84530.1| peptidase S14 [Enterococcus faecalis CH188]
 gi|257157168|gb|EEU87128.1| peptidase S14 [Enterococcus faecalis ARO1/DG]
 gi|257160205|gb|EEU90165.1| peptidase S14 [Enterococcus faecalis T11]
 gi|257162850|gb|EEU92810.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis X98]
 gi|291077982|gb|EFE15346.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis R712]
 gi|291083107|gb|EFE20070.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis S613]
 gi|294451420|gb|EFG19883.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis PC1.1]
 gi|295114015|emb|CBL32652.1| ATP-dependent Clp protease proteolytic subunit ClpP [Enterococcus
           sp. 7L76]
 gi|300850553|gb|EFK78302.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TUSoD Ef11]
 gi|306496082|gb|EFM65664.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0411]
 gi|306499497|gb|EFM68869.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0109]
 gi|306503144|gb|EFM72398.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0860]
 gi|306507052|gb|EFM76194.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX2134]
 gi|306510867|gb|EFM79884.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0855]
 gi|306513933|gb|EFM82535.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX4248]
 gi|310625455|gb|EFQ08738.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis DAPTO 512]
 gi|310630159|gb|EFQ13442.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0102]
 gi|310632304|gb|EFQ15587.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0635]
 gi|311289190|gb|EFQ67746.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis DAPTO 516]
 gi|311292553|gb|EFQ71109.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0470]
 gi|315025732|gb|EFT37664.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX2137]
 gi|315029868|gb|EFT41800.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX4000]
 gi|315031465|gb|EFT43397.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0017]
 gi|315036148|gb|EFT48080.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0027]
 gi|315145272|gb|EFT89288.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX2141]
 gi|315148132|gb|EFT92148.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX4244]
 gi|315151531|gb|EFT95547.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0012]
 gi|315153193|gb|EFT97209.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0031]
 gi|315154911|gb|EFT98927.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0043]
 gi|315160005|gb|EFU04022.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0312]
 gi|315161970|gb|EFU05987.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0645]
 gi|315164639|gb|EFU08656.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX1302]
 gi|315166938|gb|EFU10955.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX1341]
 gi|315170665|gb|EFU14682.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX1342]
 gi|315174680|gb|EFU18697.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX1346]
 gi|315573467|gb|EFU85658.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0309B]
 gi|315578035|gb|EFU90226.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0630]
 gi|315581428|gb|EFU93619.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis TX0309A]
 gi|323479964|gb|ADX79403.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enterococcus
           faecalis 62]
 gi|327534358|gb|AEA93192.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis OG1RF]
 gi|329577643|gb|EGG59074.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Enterococcus faecalis TX1467]
          Length = 197

 Score =  278 bits (712), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 101/192 (52%), Positives = 150/192 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQ++RGER+YDIYSRLLK+RI+ ++G I+D++A  + AQLLFL+A++ +K+I
Sbjct: 1   MNLIPTVIEQSSRGERAYDIYSRLLKDRIIMLSGPIDDNVANSVIAQLLFLDAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG V+AG+AI+DTM F+K  + T  +G AASMGS LL+AG+KG RFALPNA I
Sbjct: 61  YLYINSPGGSVSAGLAIFDTMNFVKADVQTIVLGMAASMGSFLLTAGQKGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+  ++RLN I  +  G+  E +E+  DRD+ M+A +A
Sbjct: 121 MIHQPLGGAQGQATEIEIAARHILDTRQRLNSILAERTGQPIEVIERDTDRDNYMTAEQA 180

Query: 196 CDWGVVDKVLMS 207
            ++G++D+V+ +
Sbjct: 181 KEYGLIDEVMEN 192


>gi|311069969|ref|YP_003974892.1| ATP-dependent Clp protease proteolytic subunit [Bacillus atrophaeus
           1942]
 gi|310870486|gb|ADP33961.1| ATP-dependent Clp protease proteolytic subunit [Bacillus atrophaeus
           1942]
          Length = 198

 Score =  278 bits (711), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 110/198 (55%), Positives = 156/198 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFLEAE+P+K+I
Sbjct: 1   MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGG +TAGMAIYDTMQFIKP +ST C+G AASMG+ LL+AGEKG R+ALPN+ +
Sbjct: 61  SIYINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN++  +  G+  E +E+  DRD+  SA EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEA 180

Query: 196 CDWGVVDKVLMSRIDIEE 213
            ++G++DKVL    + ++
Sbjct: 181 MEYGLIDKVLTRNTEEQK 198


>gi|126649375|ref|ZP_01721616.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sp.
           B14905]
 gi|169826051|ref|YP_001696209.1| ATP-dependent Clp protease proteolytic subunit [Lysinibacillus
           sphaericus C3-41]
 gi|226706460|sp|B1HVR0|CLPP_LYSSC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|126593700|gb|EAZ87623.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sp.
           B14905]
 gi|168990539|gb|ACA38079.1| ATP-dependent Clp protease proteolytic subunit 1 [Lysinibacillus
           sphaericus C3-41]
          Length = 197

 Score =  278 bits (711), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 106/197 (53%), Positives = 148/197 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT+RGER+YDIYSRLLK+RI+ +   I+D++A  I AQLLFL+AE+P K+I
Sbjct: 1   MNLIPTVIEQTSRGERAYDIYSRLLKDRIILLGSAIDDNVANSIVAQLLFLQAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG +TAGMAIYDTMQ IKP + T C+G AASMG+ LL+AGE G RFALPNA +
Sbjct: 61  SLYINSPGGSITAGMAIYDTMQIIKPKVQTICIGMAASMGAFLLAAGEPGKRFALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN I  +  G+  E + +  DRD+ M+A  A
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILFLREKLNGILSERTGQPLEVIARDTDRDNFMTAERA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G++D ++    D +
Sbjct: 181 KEYGLIDHIMHRSTDNK 197


>gi|28870881|ref|NP_793500.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|213968834|ref|ZP_03396975.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
           syringae pv. tomato T1]
 gi|28854130|gb|AAO57195.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|213926437|gb|EEB59991.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
           syringae pv. tomato T1]
          Length = 216

 Score =  278 bits (711), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 117/192 (60%), Positives = 154/192 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+EQ+ RGER+YDIYSRLLKER++F+ G +ED+MA LI AQLLFLEAENP K+I 
Sbjct: 21  GLVPMVIEQSARGERAYDIYSRLLKERVIFMVGPVEDYMANLIAAQLLFLEAENPDKDIH 80

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+ LL+ G +G R  LPN+R++
Sbjct: 81  LYINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAGGAEGKRHCLPNSRMM 140

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDI+ HA++I+ I+ RLN +   + G++ E +E+  +RD+ MSA  A 
Sbjct: 141 IHQPLGGFQGQASDIDIHAKEILHIRHRLNSLLAHHTGQSLETIERDTERDNFMSAERAA 200

Query: 197 DWGVVDKVLMSR 208
           ++G++D V+  R
Sbjct: 201 EYGLIDSVINKR 212


>gi|157693854|ref|YP_001488316.1| ATP-dependent Clp protease proteolytic subunit [Bacillus pumilus
           SAFR-032]
 gi|167008647|sp|A8FHN9|CLPP_BACP2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|157682612|gb|ABV63756.1| S14 family endopeptidase ClpP [Bacillus pumilus SAFR-032]
          Length = 198

 Score =  278 bits (711), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 109/198 (55%), Positives = 155/198 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFLEAE+P+K+I
Sbjct: 1   MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGG +TAGMAIYDTMQFIKP +ST C+G AASMG+ LL+AGEKG R+ALPN+ +
Sbjct: 61  SIYINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN++  +  G+  E +E+  DRD+  +A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILSLRDKLNQVLAERTGQPIEVIERDTDRDNFKTAEEA 180

Query: 196 CDWGVVDKVLMSRIDIEE 213
             +G++DKVL    + ++
Sbjct: 181 LQYGLIDKVLTRNTEEQK 198


>gi|83644978|ref|YP_433413.1| ATP-dependent Clp protease proteolytic subunit ClpP [Hahella
           chejuensis KCTC 2396]
 gi|83633021|gb|ABC28988.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Hahella
           chejuensis KCTC 2396]
          Length = 213

 Score =  278 bits (711), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 121/198 (61%), Positives = 155/198 (78%), Gaps = 1/198 (0%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
           ++   LVPMVVEQT RGERSYDIYSRLLKERI+F+ GQ+EDHMA L+ AQLLFLE+ENP 
Sbjct: 14  EIANALVPMVVEQTARGERSYDIYSRLLKERIIFLVGQVEDHMANLVVAQLLFLESENPD 73

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K+I LYINSPGG VTAG++IYDTMQFIKP +ST C+GQAASMG+LLLS G  G R+ LP+
Sbjct: 74  KDIHLYINSPGGSVTAGLSIYDTMQFIKPDVSTMCIGQAASMGALLLSGGAAGKRYCLPH 133

Query: 133 ARILLHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           +R+++HQP  GG  GQASDIE HA++I+ ++ +LN I  K+ G+  E + +  DRD  M 
Sbjct: 134 SRVMIHQPLLGGLQGQASDIEIHAKEILLLREKLNNILSKHTGQDIETIARDTDRDKFMD 193

Query: 192 ASEACDWGVVDKVLMSRI 209
           A  A ++G++D VL  R+
Sbjct: 194 AEMAKNYGLIDSVLDKRV 211


>gi|224419236|ref|ZP_03657242.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter
           canadensis MIT 98-5491]
 gi|253826954|ref|ZP_04869839.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter
           canadensis MIT 98-5491]
 gi|313142738|ref|ZP_07804931.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter
           canadensis MIT 98-5491]
 gi|253510360|gb|EES89019.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter
           canadensis MIT 98-5491]
 gi|313131769|gb|EFR49386.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter
           canadensis MIT 98-5491]
          Length = 196

 Score =  278 bits (711), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 114/189 (60%), Positives = 151/189 (79%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP+V+E+T RGERSYDIYSRLLK+RI+ ++GQI+D +A  I +QLLFLEAE+PQK+I LY
Sbjct: 5   VPIVIEKTGRGERSYDIYSRLLKDRIIMLSGQIDDGVAASIVSQLLFLEAEDPQKDIYLY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGVVT+G++IYDTM +IKP I T C+GQAASMG+ LLS G KG R++LPN+RI++H
Sbjct: 65  INSPGGVVTSGLSIYDTMNYIKPDICTICIGQAASMGAFLLSCGTKGKRYSLPNSRIMIH 124

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA+DIE  A++I+++K  LNEI   N  ++ E++ K  DRD  MSA EA D+
Sbjct: 125 QPLGGAQGQATDIEIQAKEILRLKATLNEILADNTNQSLEKIAKDTDRDFFMSAKEAKDY 184

Query: 199 GVVDKVLMS 207
           G++D +L  
Sbjct: 185 GLIDNILTK 193


>gi|84515416|ref|ZP_01002778.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Loktanella
           vestfoldensis SKA53]
 gi|84510699|gb|EAQ07154.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Loktanella
           vestfoldensis SKA53]
          Length = 198

 Score =  278 bits (711), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 123/198 (62%), Positives = 164/198 (82%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT RGER+YDI+SRLLKERI+F+ G + D M+ L+ AQLL LE+ENP+KEI
Sbjct: 1   MNLVPMVVEQTARGERAYDIFSRLLKERIIFLNGPVHDGMSQLVVAQLLHLESENPKKEI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGGVVT+G++IYDTMQ+IKP +ST  +GQAASMGSLLL+AG  GMRF+LPN+R+
Sbjct: 61  SMYINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLTAGHPGMRFSLPNSRV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG+ GQA+DI  HA +  K+K RLNEIYVK+ G+  ++VE  L+RD+ MS  EA
Sbjct: 121 MVHQPSGGYQGQATDIMIHAAETQKLKTRLNEIYVKHTGQPLKKVETALERDNFMSPEEA 180

Query: 196 CDWGVVDKVLMSRIDIEE 213
            +WG++D+++++R    E
Sbjct: 181 KEWGLIDEIVVNREKSSE 198


>gi|292670226|ref|ZP_06603652.1| ATP-dependent Clp protease proteolytic subunit [Selenomonas noxia
           ATCC 43541]
 gi|292648178|gb|EFF66150.1| ATP-dependent Clp protease proteolytic subunit [Selenomonas noxia
           ATCC 43541]
          Length = 197

 Score =  278 bits (711), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 109/196 (55%), Positives = 155/196 (79%), Gaps = 1/196 (0%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MVVE ++RGER+YDIYSRLLKERI+F+ G I+D +A ++ AQ+LFLE+E+P K+I LYIN
Sbjct: 1   MVVENSSRGERAYDIYSRLLKERIIFLGGPIDDSVANVVVAQMLFLESEDPDKDIHLYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGGVVTAG+AIYDTMQ+IKP +ST C+GQAASMGS+LL+AG KG R+ALP+ARI++HQP
Sbjct: 61  SPGGVVTAGLAIYDTMQYIKPDVSTICIGQAASMGSILLTAGAKGKRYALPHARIMIHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            GG  GQ++DI+  A++I++++   N I  ++ G+  +++    +RD+ MSA EA  +G+
Sbjct: 121 LGGAQGQSTDIQIQAKEILRLREVGNHILARHTGQDEKKINVDTERDNFMSAEEAKAYGL 180

Query: 201 VDKVLMSRIDIEEKSK 216
           +D+V+  R   E  +K
Sbjct: 181 IDEVVT-RPKTEPAAK 195


>gi|194015348|ref|ZP_03053964.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           pumilus ATCC 7061]
 gi|194012752|gb|EDW22318.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           pumilus ATCC 7061]
          Length = 198

 Score =  278 bits (711), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 109/198 (55%), Positives = 155/198 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFLEAE+P+K+I
Sbjct: 1   MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGG +TAGMAIYDTMQFIKP +ST C+G AASMG+ LL+AGEKG R+ALPN+ +
Sbjct: 61  SIYINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN++  +  G+  E +E+  DRD+  +A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILSLRDKLNQVLAERTGQPIEVIERDTDRDNFKTAEEA 180

Query: 196 CDWGVVDKVLMSRIDIEE 213
             +G++DKVL    + ++
Sbjct: 181 LQYGLIDKVLTRNAEEQK 198


>gi|189424987|ref|YP_001952164.1| ATP-dependent Clp protease proteolytic subunit ClpP [Geobacter
           lovleyi SZ]
 gi|226706453|sp|B3E1Z4|CLPP_GEOLS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|189421246|gb|ACD95644.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacter
           lovleyi SZ]
          Length = 197

 Score =  278 bits (711), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 121/192 (63%), Positives = 155/192 (80%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VPMVVEQ+ RGER+YDIYSRLLKERIVF+ G+I D +A L+ AQLLFLEAE+P K+I LY
Sbjct: 3   VPMVVEQSGRGERAYDIYSRLLKERIVFLGGEINDQVADLVIAQLLFLEAEDPDKDIHLY 62

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGVVTAGMAI+DTM +IK P+ST C+GQAASMG++LL+AGEKG RFALP+ARI++H
Sbjct: 63  INSPGGVVTAGMAIFDTMNYIKAPVSTICIGQAASMGAVLLTAGEKGKRFALPHARIMIH 122

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  GQA+DI   A++I+++KR LN +     G+  E +E+  +RD  MSA EA ++
Sbjct: 123 QPSGGSRGQATDIMIQAEEILRMKRELNRLLADLSGQPVERLEQDTERDFFMSAEEARNY 182

Query: 199 GVVDKVLMSRID 210
           G++D V+  R D
Sbjct: 183 GLIDAVMTRRPD 194


>gi|288554081|ref|YP_003426016.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           pseudofirmus OF4]
 gi|288545241|gb|ADC49124.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           pseudofirmus OF4]
          Length = 195

 Score =  278 bits (711), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 111/192 (57%), Positives = 152/192 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RI+ +   I+D++A  I AQLLFL+AE+P+K+I
Sbjct: 1   MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVAQLLFLQAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG +TAGMAIYDTM FIKP +ST C+G AASMG+ LL+AGE G R ALPN+ +
Sbjct: 61  SLYINSPGGSITAGMAIYDTMNFIKPKVSTICIGMAASMGAFLLAAGEPGKRLALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDIE HA+ I++++  LN+I  +  G+  E + +  DRD+ M+AS A
Sbjct: 121 MIHQPLGGTRGQASDIEIHARRIIEMRETLNKILAERTGQPLEVIARDTDRDNFMTASRA 180

Query: 196 CDWGVVDKVLMS 207
            ++G++D+V+ S
Sbjct: 181 KEYGLIDEVISS 192


>gi|56751593|ref|YP_172294.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus
           elongatus PCC 6301]
 gi|3023500|sp|O34125|CLPP2_SYNE7 RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|67460442|sp|Q5N1P6|CLPP3_SYNP6 RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
           AltName: Full=Endopeptidase Clp 3
 gi|15620530|gb|AAL03914.1|U30252_2 ClpP2 [Synechococcus elongatus PCC 7942]
 gi|2351823|gb|AAB68677.1| ATP-dependent Clp protease, proteolytic subunit [Synechococcus
           elongatus PCC 7942]
 gi|56686552|dbj|BAD79774.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus
           elongatus PCC 6301]
          Length = 240

 Score =  278 bits (711), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 108/191 (56%), Positives = 142/191 (74%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            +VP VVEQ+ RGER++DIYSRLL+ERIVF+   ++D +A  I AQLLFLEAE+P+K+I 
Sbjct: 36  AIVPTVVEQSGRGERAFDIYSRLLRERIVFLGTGVDDAVADSIVAQLLFLEAEDPEKDIQ 95

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGMAIYDTMQ + P ++T C G AASMG+ LLS G +G R ALP+ARI+
Sbjct: 96  LYINSPGGSVTAGMAIYDTMQQVAPDVATICFGLAASMGAFLLSGGAQGKRMALPSARIM 155

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA DIE  A++I+  K  LN++  ++ G+  E++E   DRD  MS  EA 
Sbjct: 156 IHQPLGGAQGQAVDIEIQAREILYHKSTLNDLLAQHTGQPLEKIEVDTDRDFFMSPEEAK 215

Query: 197 DWGVVDKVLMS 207
            +G++D+VL  
Sbjct: 216 AYGLIDQVLTR 226


>gi|259416932|ref|ZP_05740852.1| Clp protease [Silicibacter sp. TrichCH4B]
 gi|259348371|gb|EEW60148.1| Clp protease [Silicibacter sp. TrichCH4B]
          Length = 218

 Score =  278 bits (711), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 127/207 (61%), Positives = 175/207 (84%), Gaps = 1/207 (0%)

Query: 10  DSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           D  + ++  LVPMVVEQT+RGER+YDI+SRLLKERI+F+ G + D M++LI AQLL LEA
Sbjct: 11  DPTETYMNTLVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMSSLIVAQLLHLEA 70

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP KEIS+YINSPGGVVT+G++IYDTMQ+IKP +ST  +GQAASMGSLLL+AGE GMRF
Sbjct: 71  ENPSKEISMYINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLTAGEAGMRF 130

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPN+R+++HQPSGG+ GQA+DI  HA++ +K+KRRLNEIYVK+ G+ Y+ +EK L+RD+
Sbjct: 131 SLPNSRVMVHQPSGGYQGQATDIMIHAEETLKLKRRLNEIYVKHTGQDYDTIEKALERDN 190

Query: 189 IMSASEACDWGVVDKVLMSRIDIEEKS 215
            MS  +A ++G++D+++ +R+  E++ 
Sbjct: 191 FMSPEQAKEFGLIDEIVENRVKAEDEE 217


>gi|295677486|ref|YP_003606010.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           sp. CCGE1002]
 gi|295437329|gb|ADG16499.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           sp. CCGE1002]
          Length = 215

 Score =  278 bits (711), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 114/204 (55%), Positives = 153/204 (75%)

Query: 6   CAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF 65
                     LGLVP V+EQ+ RGER+YDIYSRLL+ERIVF+ G + +  A+LI AQLLF
Sbjct: 1   MPSSYPSVSALGLVPTVIEQSGRGERAYDIYSRLLRERIVFLVGPVNEQSASLIVAQLLF 60

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           LE+ENP K+IS YINSPGG V  G+AIYDTMQFIKP +ST C G AASMG+ LL+AG++G
Sbjct: 61  LESENPDKDISFYINSPGGSVYDGLAIYDTMQFIKPEVSTLCTGFAASMGTFLLTAGQRG 120

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
            R+ALPNARI++HQPSGG  G A+DIE  A++++ ++ RLN +  +  G+T +++ +  D
Sbjct: 121 KRYALPNARIMIHQPSGGGQGTAADIEIQAKEVLYVRARLNAMMAERTGRTIDDIARDTD 180

Query: 186 RDHIMSASEACDWGVVDKVLMSRI 209
           RD+ MSA EA ++G++D VL +R 
Sbjct: 181 RDNFMSALEAREYGLIDDVLEARA 204


>gi|256854365|ref|ZP_05559729.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis T8]
 gi|256709925|gb|EEU24969.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis T8]
          Length = 196

 Score =  278 bits (711), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 101/192 (52%), Positives = 150/192 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQ++RGER+YDIYSRLLK+RI+ ++G I+D++A  + AQLLFL+A++ +K+I
Sbjct: 1   MNLIPTVIEQSSRGERAYDIYSRLLKDRIIMLSGPIDDNVANSVIAQLLFLDAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG V+AG+AI+DTM F+K  + T  +G AASMGS LL+AG+KG RFALPNA I
Sbjct: 61  YLYINSPGGSVSAGLAIFDTMNFVKADVQTIVLGMAASMGSFLLTAGQKGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+  ++RLN I  +  G+  E +E+  DRD+ M+A +A
Sbjct: 121 MIHQPLGGAQGQATEIEIAARHILDTRQRLNSILAERTGQPIEVIERDTDRDNYMTAEQA 180

Query: 196 CDWGVVDKVLMS 207
            ++G++D+V+ +
Sbjct: 181 KEYGLIDEVMEN 192


>gi|306820816|ref|ZP_07454440.1| ATP-dependent Clp protease proteolytic subunit [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
 gi|304551134|gb|EFM39101.1| ATP-dependent Clp protease proteolytic subunit [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
          Length = 195

 Score =  278 bits (711), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 113/193 (58%), Positives = 153/193 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P V+EQT+RGERSYDIYSRLLKERI+F+  ++ D  A+LI AQLLFLE+E+P K+I
Sbjct: 1   MAFIPYVIEQTSRGERSYDIYSRLLKERIIFLGDEVNDQTASLIVAQLLFLESEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG +TAGMAIYDTMQ IKP +ST C+G AASMG+ LLS+G+KG R+ALPN+ I
Sbjct: 61  HFYINSPGGSITAGMAIYDTMQHIKPDVSTICVGMAASMGAFLLSSGKKGKRYALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+ HA+ I++++++LNEI  +  GK+ E + K  +RD  MSA EA
Sbjct: 121 MIHQPLGGTKGQATDIQIHAERIIRLRKKLNEIMAEQTGKSIEIINKDTERDFFMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
            D+G++D V++ R
Sbjct: 181 KDYGLIDSVMLGR 193


>gi|256544468|ref|ZP_05471841.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Anaerococcus
           vaginalis ATCC 51170]
 gi|256399793|gb|EEU13397.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Anaerococcus
           vaginalis ATCC 51170]
          Length = 195

 Score =  278 bits (711), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 118/189 (62%), Positives = 157/189 (83%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQTNRGER+YDIYSRLLK+RI+F+TG +ED ++ +I AQLLFLE+++P K+I  
Sbjct: 7   LVPTVIEQTNRGERAYDIYSRLLKDRIIFLTGPVEDGVSDIIIAQLLFLESQDPNKDIQF 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVTAG+AIYDTM +IKP +ST C+GQAASMG++LLS+G KG RF+LPN+ IL+
Sbjct: 67  YINSPGGVVTAGLAIYDTMNYIKPDVSTICIGQAASMGAVLLSSGAKGKRFSLPNSNILI 126

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQASDI+  A+ I+K+K+RLN+I   N G++ E+++K  DRD  M A EA +
Sbjct: 127 HQPSGGAQGQASDIQIQAEQILKMKKRLNKILADNTGQSIEKIQKDTDRDFAMDAYEAKE 186

Query: 198 WGVVDKVLM 206
           +G++DKV+ 
Sbjct: 187 YGLIDKVIE 195


>gi|322378952|ref|ZP_08053366.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter suis
           HS1]
 gi|322379806|ref|ZP_08054103.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter suis
           HS5]
 gi|321147774|gb|EFX42377.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter suis
           HS5]
 gi|321148628|gb|EFX43114.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter suis
           HS1]
          Length = 197

 Score =  278 bits (711), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 110/192 (57%), Positives = 152/192 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P V+E+T RGERSYDIYSRLLK+RIV ++G+I D +A+ I AQLLFLEAE+P+K+I
Sbjct: 1   MNYIPYVIEKTGRGERSYDIYSRLLKDRIVLLSGEINDAVASTIVAQLLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGG VT+G++IYDTM +I P I T C+GQAASMG+ LLS G KG RF+LP+ARI
Sbjct: 61  NLYINSPGGSVTSGLSIYDTMNYIHPDICTICIGQAASMGAFLLSCGTKGKRFSLPHARI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++I  + ++I+++K  LN+I  +N G+T E++E+  DRD  MSA +A
Sbjct: 121 MIHQPLGGTEGQATNIAIYTKEILRLKNTLNQIMAENTGQTLEKIEQDSDRDFFMSAEDA 180

Query: 196 CDWGVVDKVLMS 207
            ++G+VD VL  
Sbjct: 181 KEYGLVDAVLSK 192


>gi|158423232|ref|YP_001524524.1| ATP-dependent Clp protease proteolytic subunit [Azorhizobium
           caulinodans ORS 571]
 gi|172047856|sp|A8HYF2|CLPP_AZOC5 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|158330121|dbj|BAF87606.1| ATP-dependent Clp protease proteolytic subunit [Azorhizobium
           caulinodans ORS 571]
          Length = 210

 Score =  278 bits (711), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 138/208 (66%), Positives = 175/208 (84%), Gaps = 1/208 (0%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           +D  D ++  LVPMVVEQTNRGER+YDIYSRLLKERI+F+TG +ED M+TL  AQLLFLE
Sbjct: 2   RDPVDTYMNYLVPMVVEQTNRGERAYDIYSRLLKERIIFLTGPVEDGMSTLAVAQLLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AENP+KEIS+YINSPGGVVT+G+AIYDTMQFI+P +ST C+GQAASMGSLLL+AGEKG+R
Sbjct: 62  AENPKKEISMYINSPGGVVTSGLAIYDTMQFIRPAVSTLCIGQAASMGSLLLTAGEKGLR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           FALPNARI++HQPSGGF GQ +DI  HAQ+I+ +K+RLNEIYVK+ G+  E++E  L+RD
Sbjct: 122 FALPNARIMVHQPSGGFQGQVTDIMLHAQEILSLKKRLNEIYVKHTGQPIEKIEDALERD 181

Query: 188 HIMSASEACDWGVVDKVLMSRIDIEEKS 215
           + M+A+ A ++G++D V+  R   E   
Sbjct: 182 NFMTANAAQEFGLIDTVIDKRPSDEPAK 209


>gi|16080507|ref|NP_391334.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221311403|ref|ZP_03593250.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221315730|ref|ZP_03597535.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
           subsp. subtilis str. NCIB 3610]
 gi|221320645|ref|ZP_03601939.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
           subsp. subtilis str. JH642]
 gi|221324930|ref|ZP_03606224.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
           subsp. subtilis str. SMY]
 gi|321313004|ref|YP_004205291.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
           BSn5]
 gi|3287962|sp|P80244|CLPP_BACSU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Caseinolytic protease; AltName:
           Full=Endopeptidase Clp; AltName: Full=Stress protein G7
 gi|1945673|emb|CAB08043.1| hypothetical protein [Bacillus subtilis]
 gi|2635967|emb|CAB15459.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|2668494|gb|AAC46381.1| ClpP [Bacillus subtilis]
 gi|291485999|dbj|BAI87074.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
           subsp. natto BEST195]
 gi|320019278|gb|ADV94264.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
           BSn5]
          Length = 197

 Score =  278 bits (711), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 111/197 (56%), Positives = 154/197 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL AE+P+KEI
Sbjct: 1   MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG +TAGMAIYDTMQFIKP +ST C+G AASMG+ LL+AGEKG R+ALPN+ +
Sbjct: 61  SLYINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN++  +  G+  E +E+  DRD+  SA EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G++DK+L    D +
Sbjct: 181 LEYGLIDKILTHTEDKK 197


>gi|187925164|ref|YP_001896806.1| ATP-dependent Clp protease proteolytic subunit ClpP [Burkholderia
           phytofirmans PsJN]
 gi|187716358|gb|ACD17582.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           phytofirmans PsJN]
          Length = 215

 Score =  278 bits (711), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 112/206 (54%), Positives = 151/206 (73%)

Query: 6   CAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF 65
                     LGLVP V+EQ+ RGER+YDIYSRLL+ERIVF+ G + +  A+LI AQLLF
Sbjct: 1   MHSNYPNITGLGLVPTVIEQSGRGERAYDIYSRLLRERIVFLVGPVNEQSASLIVAQLLF 60

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           LE+ENP K+I  YINSPGG V  G+AIYDTMQFIKP +ST C G AASMG+ LL+AG++G
Sbjct: 61  LESENPDKDICFYINSPGGSVYDGLAIYDTMQFIKPEVSTLCTGFAASMGTFLLTAGQRG 120

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
            R+ALPNARI++HQPSGG  G A+D+E  A++++ ++ RLN +  +  G++ E + +  D
Sbjct: 121 KRYALPNARIMIHQPSGGSQGTAADVEIQAKEVLYLRERLNAMMAERTGRSIEAIARDTD 180

Query: 186 RDHIMSASEACDWGVVDKVLMSRIDI 211
           RD+ MSA  A  +G+VD+VL +R  +
Sbjct: 181 RDNFMSAQSAKTYGLVDEVLETRAAL 206


>gi|16126206|ref|NP_420770.1| ATP-dependent Clp protease, proteolytic subunit [Caulobacter
           crescentus CB15]
 gi|3688205|emb|CAA09090.1| endopeptidase clp [Caulobacter crescentus CB15]
 gi|13423424|gb|AAK23938.1| ATP-dependent Clp protease, proteolytic subunit [Caulobacter
           crescentus CB15]
          Length = 210

 Score =  277 bits (710), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 150/208 (72%), Positives = 178/208 (85%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
            D     + LVPMVVEQT+RGER++DI+SRLLKERI+F+TG +ED MA+LICAQLLFLE+
Sbjct: 3   YDPVSTAMNLVPMVVEQTSRGERAFDIFSRLLKERIIFLTGPVEDGMASLICAQLLFLES 62

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI++YINSPGGVVTAG+AIYDTMQ+IK P+ST CMG AASMGSLLL+AG  G R 
Sbjct: 63  ENPKKEIAMYINSPGGVVTAGLAIYDTMQYIKSPVSTVCMGMAASMGSLLLAAGAAGQRI 122

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPNARI++HQPSGGF GQASDIERHA+DI+K KRRLNEIYVK+CG+TYEEVE+TLDRDH
Sbjct: 123 SLPNARIMVHQPSGGFRGQASDIERHAEDIIKTKRRLNEIYVKHCGRTYEEVERTLDRDH 182

Query: 189 IMSASEACDWGVVDKVLMSRIDIEEKSK 216
            MSA EA  WG+VD V  SR   E  ++
Sbjct: 183 FMSADEAKAWGLVDHVYDSRDAAEAGAE 210


>gi|115311350|sp|Q3M726|CLPP3_ANAVT RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
           AltName: Full=Endopeptidase Clp 3
          Length = 214

 Score =  277 bits (710), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 107/196 (54%), Positives = 147/196 (75%), Gaps = 1/196 (0%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            +VPMVVEQ+  GER++DIYSRLL+ERI+F+   I+D +A  I AQLLFL+AE+ +K+I 
Sbjct: 10  NIVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPIDDAVANTIVAQLLFLDAEDSEKDIQ 69

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG V AGMAIYDT+Q I+P + T C G AASMG+ LL+AG KG R +LP++RI+
Sbjct: 70  LYINSPGGSVYAGMAIYDTIQQIRPDVVTICFGLAASMGAFLLTAGTKGKRMSLPDSRIM 129

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA DIE  A++I+ IK +LN++   + G+  E +E   DRD  MSA EA 
Sbjct: 130 IHQPLGGAQGQAIDIEIQAREILYIKAQLNQLLANHTGQPLERIEADTDRDFFMSAEEAK 189

Query: 197 DWGVVDKVLMSRIDIE 212
           ++G++D+V+ SR ++ 
Sbjct: 190 NYGLIDQVI-SRQNLP 204


>gi|55980584|ref|YP_143881.1| ATP-dependent Clp protease proteolytic subunit [Thermus
           thermophilus HB8]
 gi|60389682|sp|Q72L15|CLPP_THET2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|67460210|sp|Q5SKM8|CLPP_THET8 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|55771997|dbj|BAD70438.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermus
           thermophilus HB8]
          Length = 194

 Score =  277 bits (710), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 107/190 (56%), Positives = 149/190 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+EQT RGER YDIYSRLLK+RI+F+   I+  +A ++ AQLLFL+A+NP +EI L
Sbjct: 2   VIPYVIEQTARGERVYDIYSRLLKDRIIFLGTPIDAQVANVVVAQLLFLDAQNPNQEIKL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+AIYDTMQF++ P+ST  +G AASM +++L+AGEKG R+ALP+A++++
Sbjct: 62  YINSPGGEVDAGLAIYDTMQFVRAPVSTIVIGMAASMAAVILAAGEKGRRYALPHAKVMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  G ASDI   AQ+I+K K+ LNEI  K+ G+  E+VEK  DRD+ +SA EA +
Sbjct: 122 HQPWGGVRGTASDIAIQAQEILKAKKLLNEILAKHTGQPLEKVEKDTDRDYYLSAQEALE 181

Query: 198 WGVVDKVLMS 207
           +G++D+V+  
Sbjct: 182 YGLIDQVVTR 191


>gi|323488686|ref|ZP_08093928.1| ATP-dependent Clp protease proteolytic subunit [Planococcus
           donghaensis MPA1U2]
 gi|323397704|gb|EGA90508.1| ATP-dependent Clp protease proteolytic subunit [Planococcus
           donghaensis MPA1U2]
          Length = 203

 Score =  277 bits (710), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 107/201 (53%), Positives = 152/201 (75%), Gaps = 1/201 (0%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT+RGER+YDIYSRLLK+R++ +   I+D++A  I AQLLFLEAE+P K+I
Sbjct: 1   MNLIPTVIEQTSRGERAYDIYSRLLKDRVIMLGSAIDDNVANSIVAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGG +TAGMAIYDTMQFI+P + T C+G AASMG+ LL+AG KG R ALPNA +
Sbjct: 61  SIYINSPGGSITAGMAIYDTMQFIRPDVQTICIGMAASMGAFLLAAGTKGKRLALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN+I  +  G+  + + K  DRD+ M+A  A
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILHLREKLNQILSERTGQPIDVIAKDTDRDNFMTAERA 180

Query: 196 CDWGVVDKVLMSRIDIEEKSK 216
            ++G++D+V+  R  + E  K
Sbjct: 181 LEYGLIDQVIT-RSKLPENHK 200


>gi|296446284|ref|ZP_06888230.1| Endopeptidase Clp [Methylosinus trichosporium OB3b]
 gi|296256185|gb|EFH03266.1| Endopeptidase Clp [Methylosinus trichosporium OB3b]
          Length = 211

 Score =  277 bits (710), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 142/209 (67%), Positives = 181/209 (86%), Gaps = 1/209 (0%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           +D  +V+   L+P V+E T+RGER +DIYSRLL+ERI+F+TGQ+EDHMA++I AQLLFLE
Sbjct: 2   RDPLEVYNQYLIPQVIENTSRGERGFDIYSRLLRERIIFLTGQVEDHMASVIIAQLLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AENP++EI LYINSPGGVVT+G+AIYDTMQ+I+P ++T C+GQAASMGSLLL AGE G R
Sbjct: 62  AENPKREIFLYINSPGGVVTSGLAIYDTMQYIRPKVATLCIGQAASMGSLLLCAGEAGQR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           FALPNARI++HQPSGGF GQASDI RHA+DI+KIK+RLNEIYV++ G+ YE +EKTLDRD
Sbjct: 122 FALPNARIMVHQPSGGFQGQASDILRHAEDIMKIKKRLNEIYVRHTGRDYETIEKTLDRD 181

Query: 188 HIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           H MSA EA D+G+VD V ++R + + ++K
Sbjct: 182 HFMSAEEAKDFGIVDHVQVNRPEEQSETK 210


>gi|295689638|ref|YP_003593331.1| endopeptidase Clp [Caulobacter segnis ATCC 21756]
 gi|295431541|gb|ADG10713.1| Endopeptidase Clp [Caulobacter segnis ATCC 21756]
          Length = 210

 Score =  277 bits (710), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 150/208 (72%), Positives = 178/208 (85%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
            D     + LVPMVVEQT+RGER++DI+SRLLKERI+F+TG +ED MA+LICAQLLFLE+
Sbjct: 3   YDPVSTAMNLVPMVVEQTSRGERAFDIFSRLLKERIIFLTGPVEDGMASLICAQLLFLES 62

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI++YINSPGGVVTAG+AIYDTMQ+IK P+ST CMG AASMGSLLL+AG  G R 
Sbjct: 63  ENPKKEIAMYINSPGGVVTAGLAIYDTMQYIKSPVSTVCMGMAASMGSLLLAAGAAGQRI 122

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPNARI++HQPSGGF GQASDIERHA+DI+K KRRLNEIYVK+CG+TYEEVE+TLDRDH
Sbjct: 123 SLPNARIMVHQPSGGFRGQASDIERHAEDIIKTKRRLNEIYVKHCGRTYEEVERTLDRDH 182

Query: 189 IMSASEACDWGVVDKVLMSRIDIEEKSK 216
            MSA EA  WG+VD V  SR   E  ++
Sbjct: 183 FMSADEAKAWGLVDHVYDSREAAEAGAE 210


>gi|196230686|ref|ZP_03129547.1| Endopeptidase Clp [Chthoniobacter flavus Ellin428]
 gi|196225027|gb|EDY19536.1| Endopeptidase Clp [Chthoniobacter flavus Ellin428]
          Length = 228

 Score =  277 bits (710), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 114/193 (59%), Positives = 151/193 (78%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP VVEQT RGERSYDIYSRLLK+RI+F+   I+D +A  I AQLLFL+ E+ +K+I++Y
Sbjct: 18  VPYVVEQTGRGERSYDIYSRLLKDRIIFLGTAIDDGVANSIIAQLLFLQMEDGKKDINIY 77

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDTMQF+   ++T+C+G AASMG++LL+AG KG R+ALPN+ I++H
Sbjct: 78  INSPGGSVTAGLAIYDTMQFLTCDVNTYCIGMAASMGAVLLAAGTKGKRYALPNSDIMIH 137

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           Q SGG  G ASD+ER  + + K+K+RL  I  K+ GKT E+V+   DRD+ MSA EA  +
Sbjct: 138 QVSGGAQGTASDVERTVEFMFKLKKRLIHILAKHTGKTDEQVKTDSDRDYYMSADEAKAY 197

Query: 199 GVVDKVLMSRIDI 211
           G+VD+V+ SR DI
Sbjct: 198 GLVDEVVKSRKDI 210


>gi|317486004|ref|ZP_07944859.1| Clp protease [Bilophila wadsworthia 3_1_6]
 gi|316922777|gb|EFV44008.1| Clp protease [Bilophila wadsworthia 3_1_6]
          Length = 207

 Score =  277 bits (710), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 117/206 (56%), Positives = 165/206 (80%), Gaps = 1/206 (0%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           +D+    VP+VVE + R ER+YDI+SRLLK+RIV +  ++ D +A+LICAQLLFLE+++P
Sbjct: 2   QDILDMTVPIVVETSGRTERAYDIFSRLLKDRIVLLGSEVNDAVASLICAQLLFLESQDP 61

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +KEI LYINSPGG VTAGMAIYDTM +I PPI+T CMG+AASMG+ LLSAG+KGMR+ALP
Sbjct: 62  EKEIYLYINSPGGSVTAGMAIYDTMNYITPPIATVCMGRAASMGAFLLSAGQKGMRYALP 121

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+++++HQP GGF GQA+DI+ HA++I++++  LN +  K+ G+  E++ +  +RD+ M+
Sbjct: 122 NSQVMIHQPLGGFQGQATDIDIHAREILRMRETLNGLLAKHTGQPIEKIAQDTERDNFMT 181

Query: 192 ASEACDWGVVDKVLMSRID-IEEKSK 216
           A  A  +G+VDKVL SR D + EKS+
Sbjct: 182 AEMAQAYGLVDKVLASRRDLLAEKSE 207


>gi|119491296|ref|ZP_01623350.1| ATP-dependent Clp protease proteolytic subunit [Lyngbya sp. PCC
           8106]
 gi|119453460|gb|EAW34622.1| ATP-dependent Clp protease proteolytic subunit [Lyngbya sp. PCC
           8106]
          Length = 203

 Score =  277 bits (710), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 100/191 (52%), Positives = 146/191 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+EQ+ RGER++DIYSRLL++RI+F+  Q+   +A LI AQ+LFL+A++P+K+I L
Sbjct: 1   MIPTVIEQSGRGERAFDIYSRLLRDRIIFLGQQVTADLANLIVAQMLFLDADDPEKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG+ IYDTM  I+P +ST C+G AASMG+ LLSAG KG R +LP++RI++
Sbjct: 61  YINSPGGSVSAGLGIYDTMNHIRPDVSTICIGLAASMGAFLLSAGAKGKRMSLPHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+ +K+RLN+    + G+    +E+  +RD  MSA EA D
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYLKKRLNQSLADHTGQPMSRIEQDTERDFFMSAQEAVD 180

Query: 198 WGVVDKVLMSR 208
           +G++D+V   +
Sbjct: 181 YGLIDQVYDRK 191


>gi|254525030|ref|ZP_05137085.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Stenotrophomonas sp. SKA14]
 gi|219722621|gb|EED41146.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Stenotrophomonas sp. SKA14]
          Length = 196

 Score =  277 bits (710), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 119/190 (62%), Positives = 161/190 (84%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MVVEQT+RGER+YDIYSRLLKER++F+ G I+DHMA ++ AQLLFLE+ENP+K+I++YIN
Sbjct: 1   MVVEQTSRGERAYDIYSRLLKERLIFLVGPIDDHMANVVVAQLLFLESENPEKDINIYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGGVVTAGMAIYDTMQ+IKP +ST C+GQAASMG+LLL+AGE G R+ALPN+R+++HQP
Sbjct: 61  SPGGVVTAGMAIYDTMQYIKPNVSTTCIGQAASMGALLLAAGEAGKRYALPNSRVMIHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            GG+ GQA+DI+ HA++I+ ++ RLNE+  K+ G++ E + +  +RD+  SA EA  +G+
Sbjct: 121 LGGYQGQATDIDIHAREILTLRSRLNEVLAKHTGQSLETIARDTERDNFKSAFEAQAYGL 180

Query: 201 VDKVLMSRID 210
           VD+VL  R D
Sbjct: 181 VDQVLERRPD 190


>gi|291463572|pdb|3KTI|A Chain A, Structure Of Clpp In Complex With Adep1
 gi|291463573|pdb|3KTI|B Chain B, Structure Of Clpp In Complex With Adep1
 gi|291463574|pdb|3KTI|C Chain C, Structure Of Clpp In Complex With Adep1
 gi|291463575|pdb|3KTI|D Chain D, Structure Of Clpp In Complex With Adep1
 gi|291463576|pdb|3KTI|E Chain E, Structure Of Clpp In Complex With Adep1
 gi|291463577|pdb|3KTI|F Chain F, Structure Of Clpp In Complex With Adep1
 gi|291463578|pdb|3KTI|G Chain G, Structure Of Clpp In Complex With Adep1
 gi|291463586|pdb|3KTJ|A Chain A, Structure Of Clpp In Complex With Adep2 In Monoclinic
           Crystal Form
 gi|291463587|pdb|3KTJ|B Chain B, Structure Of Clpp In Complex With Adep2 In Monoclinic
           Crystal Form
 gi|291463588|pdb|3KTJ|C Chain C, Structure Of Clpp In Complex With Adep2 In Monoclinic
           Crystal Form
 gi|291463589|pdb|3KTJ|D Chain D, Structure Of Clpp In Complex With Adep2 In Monoclinic
           Crystal Form
 gi|291463590|pdb|3KTJ|E Chain E, Structure Of Clpp In Complex With Adep2 In Monoclinic
           Crystal Form
 gi|291463591|pdb|3KTJ|F Chain F, Structure Of Clpp In Complex With Adep2 In Monoclinic
           Crystal Form
 gi|291463592|pdb|3KTJ|G Chain G, Structure Of Clpp In Complex With Adep2 In Monoclinic
           Crystal Form
 gi|291463593|pdb|3KTK|A Chain A, Structure Of Clpp In Complex With Adep2 In Triclinic
           Crystal Form
 gi|291463594|pdb|3KTK|B Chain B, Structure Of Clpp In Complex With Adep2 In Triclinic
           Crystal Form
 gi|291463595|pdb|3KTK|C Chain C, Structure Of Clpp In Complex With Adep2 In Triclinic
           Crystal Form
 gi|291463596|pdb|3KTK|D Chain D, Structure Of Clpp In Complex With Adep2 In Triclinic
           Crystal Form
 gi|291463597|pdb|3KTK|E Chain E, Structure Of Clpp In Complex With Adep2 In Triclinic
           Crystal Form
 gi|291463598|pdb|3KTK|F Chain F, Structure Of Clpp In Complex With Adep2 In Triclinic
           Crystal Form
 gi|291463599|pdb|3KTK|G Chain G, Structure Of Clpp In Complex With Adep2 In Triclinic
           Crystal Form
 gi|291463600|pdb|3KTK|H Chain H, Structure Of Clpp In Complex With Adep2 In Triclinic
           Crystal Form
 gi|291463601|pdb|3KTK|I Chain I, Structure Of Clpp In Complex With Adep2 In Triclinic
           Crystal Form
 gi|291463602|pdb|3KTK|J Chain J, Structure Of Clpp In Complex With Adep2 In Triclinic
           Crystal Form
 gi|291463603|pdb|3KTK|K Chain K, Structure Of Clpp In Complex With Adep2 In Triclinic
           Crystal Form
 gi|291463604|pdb|3KTK|L Chain L, Structure Of Clpp In Complex With Adep2 In Triclinic
           Crystal Form
 gi|291463605|pdb|3KTK|M Chain M, Structure Of Clpp In Complex With Adep2 In Triclinic
           Crystal Form
 gi|291463606|pdb|3KTK|N Chain N, Structure Of Clpp In Complex With Adep2 In Triclinic
           Crystal Form
          Length = 199

 Score =  277 bits (710), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 111/196 (56%), Positives = 153/196 (78%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            L+P V+EQTNRGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL AE+P+KEIS
Sbjct: 1   NLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEIS 60

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG +TAGMAIYDTMQFIKP +ST C+G AASMG+ LL+AGEKG R+ALPN+ ++
Sbjct: 61  LYINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVM 120

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA++IE  A+ I+ ++ +LN++  +  G+  E +E+  DRD+  SA EA 
Sbjct: 121 IHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEAL 180

Query: 197 DWGVVDKVLMSRIDIE 212
           ++G++DK+L    D +
Sbjct: 181 EYGLIDKILTHTEDKK 196


>gi|166369013|ref|YP_001661286.1| ATP-dependent Clp protease proteolytic subunit 2 [Microcystis
           aeruginosa NIES-843]
 gi|166091386|dbj|BAG06094.1| ATP-dependent Clp protease proteolytic subunit 2 [Microcystis
           aeruginosa NIES-843]
          Length = 233

 Score =  277 bits (710), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 102/202 (50%), Positives = 147/202 (72%), Gaps = 1/202 (0%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
            +    ++P+V+EQ+  GER++DIYSRLL+ERIVF+   ++D +A  I AQLL+LEAE+P
Sbjct: 25  RNSLANVLPVVIEQSGMGERAFDIYSRLLRERIVFLGTPVDDQVADSIVAQLLYLEAEDP 84

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+I LYINSPGG V AG+AIYDTMQ I+P ++T C G AASMG+ LL  G  G R +LP
Sbjct: 85  EKDIQLYINSPGGSVYAGLAIYDTMQQIRPDVATICFGLAASMGAFLLCGGAAGKRMSLP 144

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           ++RI++HQP GG  GQASDI   A++I+ IK+RLN +   + G+ Y+ +    +RD  MS
Sbjct: 145 SSRIMIHQPLGGAQGQASDIAIQAKEILYIKQRLNTMLAHHTGQPYDRIANDTERDFFMS 204

Query: 192 ASEACDWGVVDKVLMSRIDIEE 213
           A EA ++G++D V+ SR ++ +
Sbjct: 205 AVEAKEYGLIDLVI-SRPELPD 225


>gi|149916365|ref|ZP_01904885.1| phosphoglycerate kinase [Roseobacter sp. AzwK-3b]
 gi|149809819|gb|EDM69671.1| phosphoglycerate kinase [Roseobacter sp. AzwK-3b]
          Length = 210

 Score =  277 bits (710), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 130/207 (62%), Positives = 176/207 (85%), Gaps = 1/207 (0%)

Query: 10  DSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           D  + ++  LVPMVVEQT+RGER+YDI+SRLLKERI+FV G + D M++LI AQLL LEA
Sbjct: 3   DPYETYMNTLVPMVVEQTSRGERAYDIFSRLLKERIIFVNGPVHDGMSSLIVAQLLHLEA 62

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP KEIS+YINSPGGVVT+G++IYDTMQ+IKP +ST  +GQAASMGSLLL+AGEKGMRF
Sbjct: 63  ENPAKEISMYINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLTAGEKGMRF 122

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPN+RI++HQPSGG+ GQA+DI  HA++ +K+K+RLN+IYVK+ G+T ++VE  L+RD+
Sbjct: 123 SLPNSRIMVHQPSGGYQGQATDIMIHAEETLKLKKRLNQIYVKHTGQTLKKVEDALERDN 182

Query: 189 IMSASEACDWGVVDKVLMSRIDIEEKS 215
            MS  EA +WG++D+++ SR+  +++ 
Sbjct: 183 FMSPEEAKNWGLIDEIVESRVKTDDEK 209


>gi|81301334|ref|YP_401542.1| ATP-dependent Clp protease proteolytic subunit ClpP [Synechococcus
           elongatus PCC 7942]
 gi|81170215|gb|ABB58555.1| ATP-dependent Clp protease proteolytic subunit ClpP [Synechococcus
           elongatus PCC 7942]
          Length = 244

 Score =  277 bits (710), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 108/191 (56%), Positives = 142/191 (74%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            +VP VVEQ+ RGER++DIYSRLL+ERIVF+   ++D +A  I AQLLFLEAE+P+K+I 
Sbjct: 40  AIVPTVVEQSGRGERAFDIYSRLLRERIVFLGTGVDDAVADSIVAQLLFLEAEDPEKDIQ 99

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGMAIYDTMQ + P ++T C G AASMG+ LLS G +G R ALP+ARI+
Sbjct: 100 LYINSPGGSVTAGMAIYDTMQQVAPDVATICFGLAASMGAFLLSGGAQGKRMALPSARIM 159

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA DIE  A++I+  K  LN++  ++ G+  E++E   DRD  MS  EA 
Sbjct: 160 IHQPLGGAQGQAVDIEIQAREILYHKSTLNDLLAQHTGQPLEKIEVDTDRDFFMSPEEAK 219

Query: 197 DWGVVDKVLMS 207
            +G++D+VL  
Sbjct: 220 AYGLIDQVLTR 230


>gi|212696598|ref|ZP_03304726.1| hypothetical protein ANHYDRO_01138 [Anaerococcus hydrogenalis DSM
           7454]
 gi|325847156|ref|ZP_08169955.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|212676329|gb|EEB35936.1| hypothetical protein ANHYDRO_01138 [Anaerococcus hydrogenalis DSM
           7454]
 gi|325480936|gb|EGC83982.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 195

 Score =  277 bits (710), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 120/189 (63%), Positives = 157/189 (83%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQTNRGER+YDIYSRLLK+RI+F+TG +ED ++ +I AQLLFLE+++P K+I  
Sbjct: 7   LVPTVIEQTNRGERAYDIYSRLLKDRIIFLTGPVEDGVSDIIIAQLLFLESQDPNKDIQF 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVTAG+AIYDTM +IKP +ST C+GQAASMG++LLS+G KG RF+LPN+ IL+
Sbjct: 67  YINSPGGVVTAGLAIYDTMNYIKPDVSTICIGQAASMGAVLLSSGAKGKRFSLPNSNILI 126

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQASDI+  A+ I+KIK+RLN+I   N G+T E+++K  DRD  M A EA +
Sbjct: 127 HQPSGGAQGQASDIQIQAEQILKIKKRLNKILSDNTGQTIEKIQKDTDRDFSMDAYEAKE 186

Query: 198 WGVVDKVLM 206
           +G++DKV+ 
Sbjct: 187 YGLIDKVIE 195


>gi|39936026|ref|NP_948302.1| endopeptidase Clp [Rhodopseudomonas palustris CGA009]
 gi|192291681|ref|YP_001992286.1| Endopeptidase Clp [Rhodopseudomonas palustris TIE-1]
 gi|67460293|sp|Q6N5L3|CLPP_RHOPA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706467|sp|B3Q7P5|CLPP_RHOPT RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|39649880|emb|CAE28402.1| ATP-dependent Clp protease proteolytic subunit [Rhodopseudomonas
           palustris CGA009]
 gi|192285430|gb|ACF01811.1| Endopeptidase Clp [Rhodopseudomonas palustris TIE-1]
          Length = 212

 Score =  277 bits (710), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 138/204 (67%), Positives = 174/204 (85%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  + ++ LVPMVVEQTNRGER+YDI+SRLLKERI+FVTG +ED M+TLI AQLLFLEA
Sbjct: 2   RDPVETYMNLVPMVVEQTNRGERAYDIFSRLLKERIIFVTGPVEDGMSTLIVAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEIS+YINSPGGVVT+G+AIYDTMQFI+PP+ST C GQAASMGSLLL+AG K MRF
Sbjct: 62  ENPKKEISMYINSPGGVVTSGLAIYDTMQFIRPPVSTLCTGQAASMGSLLLAAGHKDMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPNARI++HQPSGGF GQA+DI  HAQ+I+ +K+RLNEIYV + G+TY+ +E  L+RD 
Sbjct: 122 SLPNARIMVHQPSGGFQGQATDIMLHAQEILNLKKRLNEIYVHHTGQTYKAIEDALERDK 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIE 212
            ++A  A ++G+VDKV+  R +  
Sbjct: 182 FLTAEMAREFGIVDKVIEKRPEDP 205


>gi|83949690|ref|ZP_00958423.1| Protease subunit of ATP-dependent Clp protease [Roseovarius
           nubinhibens ISM]
 gi|83837589|gb|EAP76885.1| Protease subunit of ATP-dependent Clp protease [Roseovarius
           nubinhibens ISM]
          Length = 203

 Score =  277 bits (710), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 128/200 (64%), Positives = 170/200 (85%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQT+RGER+YDI+SRLLKERI+F+ G + D M++L+ AQLL LEAENP KEIS
Sbjct: 3   TLVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMSSLVVAQLLHLEAENPSKEIS 62

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGGVVT+G++IYDTMQ+I+P +ST  +GQAASMGSLLL+AG KGMR++LPN+RI+
Sbjct: 63  MYINSPGGVVTSGLSIYDTMQYIRPAVSTLVIGQAASMGSLLLTAGAKGMRYSLPNSRIM 122

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG+ GQA+DI  HA++ +K+KRRLNEIYVK+ G+T ++VE+ L+RD+ MS  EA 
Sbjct: 123 VHQPSGGYQGQATDIMIHAEETLKLKRRLNEIYVKHTGQTLKKVEEALERDNFMSPEEAK 182

Query: 197 DWGVVDKVLMSRIDIEEKSK 216
            WG++D+++ SR   +E  K
Sbjct: 183 SWGLIDEIVESRGKADEDDK 202


>gi|167855227|ref|ZP_02477997.1| bifunctional indole-3-glycerol phosphate
           synthase/phosphoribosylanthranilate isomerase
           [Haemophilus parasuis 29755]
 gi|167853680|gb|EDS24924.1| bifunctional indole-3-glycerol phosphate
           synthase/phosphoribosylanthranilate isomerase
           [Haemophilus parasuis 29755]
          Length = 193

 Score =  277 bits (710), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 117/193 (60%), Positives = 157/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++PMVVEQ+++GER+YDIYSRLLKERI+F+ G +ED MA LI AQ+LFLEAE+P+K+I
Sbjct: 1   MAVIPMVVEQSSKGERAYDIYSRLLKERIIFLNGGVEDEMAKLIIAQMLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVTAG+AIYDTM FIKP +ST CMGQA SMG+ LLS+G KG RFALPN+R+
Sbjct: 61  YLYINSPGGVVTAGLAIYDTMNFIKPDVSTLCMGQACSMGAFLLSSGAKGKRFALPNSRV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG+ GQA+DI+ HAQ+I+K+K  L     ++C + +E+V +  +RD+ MSA EA
Sbjct: 121 MIHQPLGGYRGQATDIQIHAQEILKLKEMLTRKMAEHCSQPFEKVAQDTERDNFMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D V+  R
Sbjct: 181 KAYGLIDDVVTKR 193


>gi|302804055|ref|XP_002983780.1| hypothetical protein SELMODRAFT_48156 [Selaginella moellendorffii]
 gi|300148617|gb|EFJ15276.1| hypothetical protein SELMODRAFT_48156 [Selaginella moellendorffii]
          Length = 206

 Score =  277 bits (710), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 118/194 (60%), Positives = 161/194 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GL+PMV+E T RGER+YDI+SRLLKERIV + G I D  A+L+ AQLL+LE+ENP K I 
Sbjct: 5   GLIPMVIEHTARGERAYDIFSRLLKERIVCIHGPIADDTASLVVAQLLYLESENPLKPIH 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGVVTAG+AIYDTMQ+I+ P+ST C+GQAASMGSLLL+AGE G R +LPNAR++
Sbjct: 65  LYINSPGGVVTAGLAIYDTMQYIRSPVSTLCVGQAASMGSLLLAAGEPGQRRSLPNARVM 124

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG SGQASDI   A++I+ ++ RLN++Y K+ G + E+++++++RDH MS  EA 
Sbjct: 125 VHQPSGGASGQASDIAIQAREILDMRSRLNKLYAKHTGSSIEKIDQSMERDHFMSPEEAK 184

Query: 197 DWGVVDKVLMSRID 210
           ++G++D+V++ R +
Sbjct: 185 EFGLIDEVIVQRPE 198


>gi|284097335|ref|ZP_06385465.1| Peptidase S14, ClpP [Candidatus Poribacteria sp. WGA-A3]
 gi|283831154|gb|EFC35134.1| Peptidase S14, ClpP [Candidatus Poribacteria sp. WGA-A3]
          Length = 203

 Score =  277 bits (710), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 115/193 (59%), Positives = 161/193 (83%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+PMV+E TNRGER+YDIYSRLLK+RI+F+   I+D  + LI AQLLFLEAE+P+K+I+L
Sbjct: 2   LIPMVIESTNRGERAYDIYSRLLKDRIIFLGAPIDDIFSNLIIAQLLFLEAEDPEKDINL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM IYDTMQ++KPPI+T C+GQAASMG+LLL+AG +G R ALPNAR+++
Sbjct: 62  YINSPGGSVTAGMGIYDTMQYVKPPITTICLGQAASMGALLLAAGTQGKRHALPNARVMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQA++I+ HA++I+KI+ RLN+I  ++ G+  E++ +  +RD+ MS +EA D
Sbjct: 122 HQPMGGFQGQATEIDIHAREILKIRERLNQILSEHTGQALEKISQDTERDYFMSGTEAKD 181

Query: 198 WGVVDKVLMSRID 210
           +G++D+V++   +
Sbjct: 182 YGLIDEVIVRASE 194


>gi|316933821|ref|YP_004108803.1| endopeptidase Clp [Rhodopseudomonas palustris DX-1]
 gi|315601535|gb|ADU44070.1| Endopeptidase Clp [Rhodopseudomonas palustris DX-1]
          Length = 212

 Score =  277 bits (709), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 138/207 (66%), Positives = 175/207 (84%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  + ++ LVPMVVEQTNRGER+YDI+SRLLKERI+FVTG +ED M+TLI AQLLFLEA
Sbjct: 2   RDPVETYMNLVPMVVEQTNRGERAYDIFSRLLKERIIFVTGPVEDGMSTLIVAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEIS+YINSPGGVVT+G+AIYDTMQFI+PP+ST C GQAASMGSLLL+AG K MRF
Sbjct: 62  ENPKKEISMYINSPGGVVTSGLAIYDTMQFIRPPVSTLCTGQAASMGSLLLAAGHKDMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPNARI++HQPSGGF GQA+DI  HAQ+I+ +K+RLNEIYV + G+TY+ +E  L+RD 
Sbjct: 122 SLPNARIMVHQPSGGFQGQATDIMLHAQEILNLKKRLNEIYVHHTGQTYKAIEDALERDK 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIEEKS 215
            ++A  A ++G+VDKV+  R +    +
Sbjct: 182 FLTAEMAREFGIVDKVIDKRPEDPSPA 208


>gi|167464584|ref|ZP_02329673.1| ATP-dependent Clp protease proteolytic subunit [Paenibacillus
           larvae subsp. larvae BRL-230010]
          Length = 196

 Score =  277 bits (709), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 115/197 (58%), Positives = 158/197 (80%), Gaps = 1/197 (0%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+PMVVEQ  RGERSYDIYSRLLK+RI+F+   I+D +  L+ AQLLFL A++  K+I
Sbjct: 1   MSLIPMVVEQEARGERSYDIYSRLLKDRIIFIGSAIDDDVVNLVIAQLLFLSAQDADKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG+ IYDTMQ+IKP +ST C+G AASMGSLLL+AG KG RFALPN+ +
Sbjct: 61  HLYINSPGGSVTAGLGIYDTMQYIKPDVSTICVGMAASMGSLLLTAGAKGKRFALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+ HA  I+K +++LNEIYV + G+TY++++K  DRD+ +SA +A
Sbjct: 121 MIHQPLGGVRGQAADIKIHADWILKTRKKLNEIYVHHTGQTYDKIDKDTDRDNFLSALDA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G++D+V+  R D++
Sbjct: 181 KEYGLIDEVIT-RSDLK 196


>gi|119476204|ref|ZP_01616556.1| ATP-dependent Clp protease, proteolytic subunit ClpP [marine gamma
           proteobacterium HTCC2143]
 gi|119450831|gb|EAW32065.1| ATP-dependent Clp protease, proteolytic subunit ClpP [marine gamma
           proteobacterium HTCC2143]
          Length = 206

 Score =  277 bits (709), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 120/197 (60%), Positives = 158/197 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LGLVPMVVEQT +GERSYDIYSRLLKER++F+ GQ+ED+MA LI AQLLFLE+ENP K+I
Sbjct: 9   LGLVPMVVEQTAKGERSYDIYSRLLKERVIFMVGQVEDNMANLIVAQLLFLESENPDKDI 68

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG++IYDTMQFI+P +ST C+GQAASMG+ LL+ G KG RF LPNAR 
Sbjct: 69  HLYINSPGGSVTAGLSIYDTMQFIRPDVSTMCIGQAASMGAFLLAGGAKGKRFILPNART 128

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+DI+  A++I+ I+ RLN++  ++ G   E + +  +RD+ M+A ++
Sbjct: 129 MIHQPSGGAQGQATDIDIQAREILIIRERLNQLMAEHTGNDVETIRRDTERDNFMNADDS 188

Query: 196 CDWGVVDKVLMSRIDIE 212
             +G+VD+VL  R  +E
Sbjct: 189 KTYGLVDEVLRGRNSVE 205


>gi|227486247|ref|ZP_03916563.1| endopeptidase Clp [Anaerococcus lactolyticus ATCC 51172]
 gi|227235658|gb|EEI85673.1| endopeptidase Clp [Anaerococcus lactolyticus ATCC 51172]
          Length = 205

 Score =  277 bits (709), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 117/190 (61%), Positives = 152/190 (80%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQTNRGER+YDIYSRLLK+RI+F++G++ D ++ +I AQLLFLE+E+P K+I  
Sbjct: 14  LVPTVIEQTNRGERAYDIYSRLLKDRIIFLSGEVRDEVSDIIIAQLLFLESEDPNKDIHF 73

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G+AIYDTM +IKP +ST C+GQAASMG++LLS+G KG RF+LPN+ I++
Sbjct: 74  YINSPGGVVTSGLAIYDTMNYIKPDVSTICIGQAASMGAVLLSSGAKGKRFSLPNSNIMI 133

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQASDI   A+ I+KIK  LN I  +N GK    +EK  DRD  M+A EA  
Sbjct: 134 HQPSGGAQGQASDIVIQAEQILKIKANLNRILSENTGKDLATIEKDTDRDFAMTAEEALK 193

Query: 198 WGVVDKVLMS 207
           +G++DKV+ S
Sbjct: 194 YGLIDKVIES 203


>gi|331001370|ref|ZP_08324994.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Parasutterella excrementihominis YIT 11859]
 gi|329568629|gb|EGG50431.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Parasutterella excrementihominis YIT 11859]
          Length = 209

 Score =  277 bits (709), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 112/207 (54%), Positives = 159/207 (76%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           D  +    L+PMV+EQ+ RGERS+DIYSRLL++R+VF+ G + D  A L+ AQLLFLE+E
Sbjct: 3   DFSNFNSALIPMVIEQSGRGERSFDIYSRLLRDRVVFLVGPVTDQSANLVVAQLLFLESE 62

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP K+ISLYI+SPGG V AG++IYDTMQFIKP +ST C+G AASMG+ LL+AG KG RFA
Sbjct: 63  NPDKDISLYIDSPGGSVYAGLSIYDTMQFIKPDVSTICLGMAASMGAFLLAAGAKGKRFA 122

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPN+RI++HQPSGG +G A+DIE  A++I++++ RLN I  ++ G++ E++    +RD+ 
Sbjct: 123 LPNSRIMIHQPSGGTNGTAADIEIQAKEILELRSRLNTILSEHTGQSIEKIAVDTERDNF 182

Query: 190 MSASEACDWGVVDKVLMSRIDIEEKSK 216
           MS+++A ++G++D V   R +   K K
Sbjct: 183 MSSAQAVEYGIIDGVFRKRSEQIIKKK 209


>gi|78188367|ref|YP_378705.1| peptidase S14, ClpP [Chlorobium chlorochromatii CaD3]
 gi|90101406|sp|Q3ATL3|CLPP_CHLCH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|78170566|gb|ABB27662.1| ATP-dependent Clp protease proteolytic subunit ClpP [Chlorobium
           chlorochromatii CaD3]
          Length = 225

 Score =  277 bits (709), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 103/204 (50%), Positives = 153/204 (75%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           + +   LVPMV+E + RGER++DI+SRLL+ERI+F+   I++H+A LI AQL+FLE+E+P
Sbjct: 22  QGISNSLVPMVIETSGRGERAFDIFSRLLRERIIFLGTGIDEHVAGLIMAQLIFLESEDP 81

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +++I +YINSPGG V+AG+ IYDTMQ+I+P IST C+G AASMG+ LL++G KG R +LP
Sbjct: 82  ERDIYIYINSPGGSVSAGLGIYDTMQYIRPEISTVCVGMAASMGAFLLASGNKGKRASLP 141

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           ++RI++HQPSGG  GQ +DI   A++I KI+R L E+  K+ G+  E+V +  +RD  M+
Sbjct: 142 HSRIMIHQPSGGAQGQETDIVIQAREIEKIRRLLEELLAKHTGQPVEKVREDSERDRWMN 201

Query: 192 ASEACDWGVVDKVLMSRIDIEEKS 215
             EA ++G++D +   R   E+K 
Sbjct: 202 PQEALEYGLIDAIFEKRPTPEKKD 225


>gi|318041532|ref|ZP_07973488.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           CB0101]
          Length = 196

 Score =  277 bits (709), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 98/192 (51%), Positives = 138/192 (71%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+E++ RGER++DIYSRLL+ERI+F+   +    A  I AQLLFLEAE+P+K+I L
Sbjct: 1   MIPIVIEESGRGERAFDIYSRLLRERIIFLGEPVTSESANRIVAQLLFLEAEDPEKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I+DTMQ IKP + T C+G AASMG+ LL AG KG R +L ++RI++
Sbjct: 61  YINSPGGSVYDGLGIFDTMQHIKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLTHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A +I+ +K++LN+      G+    +E+  DRD  MS +EA +
Sbjct: 121 HQPLGGARGQASDIRIQADEILYLKKKLNQELADRTGQPLSRIEEDTDRDFFMSPAEAAE 180

Query: 198 WGVVDKVLMSRI 209
           +G++DKV+  R 
Sbjct: 181 YGLIDKVIDKRP 192


>gi|308067009|ref|YP_003868614.1| ATP-dependent Clp protease proteolytic subunit(Endopeptidase Clp)
           [Paenibacillus polymyxa E681]
 gi|305856288|gb|ADM68076.1| ATP-dependent Clp protease proteolytic subunit(Endopeptidase Clp)
           [Paenibacillus polymyxa E681]
          Length = 193

 Score =  277 bits (709), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 111/187 (59%), Positives = 146/187 (78%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MVVEQ+NRGER+YDIYSRLLK+RI+ +   + D +A  I AQ+LFL AE+P+K+I LYIN
Sbjct: 1   MVVEQSNRGERAYDIYSRLLKDRIILLGSDVNDVVANSIIAQMLFLAAEDPEKDIHLYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGG +TAGMAI+DTMQ+IKP +ST C+G AASMG+ LL+AG KG RFALPN+ I++HQP
Sbjct: 61  SPGGSITAGMAIFDTMQYIKPDVSTICVGMAASMGAFLLNAGAKGKRFALPNSEIMIHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            GG  GQA+DIE  A+ I+K++ +LN I     G+  E +EK  DRD+ MSA +A ++G+
Sbjct: 121 LGGAQGQATDIEIRARRILKMRDKLNRILADRTGQPLERIEKDTDRDYFMSADDAKEYGI 180

Query: 201 VDKVLMS 207
           +DKVL S
Sbjct: 181 IDKVLTS 187


>gi|322384476|ref|ZP_08058158.1| ATP-dependent Clp protease proteolytic subunit-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321150686|gb|EFX44161.1| ATP-dependent Clp protease proteolytic subunit-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 193

 Score =  277 bits (709), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 112/192 (58%), Positives = 148/192 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +PMVVE   RGERSYDIYSRLLK+RIVF+  Q+ D +A  I AQLLFL A++P K+I
Sbjct: 1   MSFIPMVVEPDARGERSYDIYSRLLKDRIVFLGTQVNDAVANSIIAQLLFLAAQDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG +TAGMAIYDTMQ+IKP +ST C+G AASMG+ LL+AG  G R+ALPN+ +
Sbjct: 61  SLYINSPGGSITAGMAIYDTMQYIKPDVSTICVGMAASMGAFLLNAGAVGKRYALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DIE  A+ I+K++  LN I  +  G+  E++E+  DRD+ MSASEA
Sbjct: 121 MIHQPLGGAEGQATDIEIRAKRIIKMRENLNRILSERTGQPLEKIERDTDRDYFMSASEA 180

Query: 196 CDWGVVDKVLMS 207
            ++G++DKV+  
Sbjct: 181 KEYGLIDKVIER 192


>gi|219872047|ref|YP_002476422.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
           parasuis SH0165]
 gi|254763791|sp|B8F822|CLPP_HAEPS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|219692251|gb|ACL33474.1| ATP-dependent Clp protease proteolytic subunit ClpP [Haemophilus
           parasuis SH0165]
          Length = 193

 Score =  277 bits (709), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 118/193 (61%), Positives = 157/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++PMVVEQ+++GER+YDIYSRLLKERI+F+ G +ED MA LI AQ+LFLEAE+P+K+I
Sbjct: 1   MAVIPMVVEQSSKGERAYDIYSRLLKERIIFLNGGVEDEMAKLIIAQMLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVTAG+AIYDTM FIKP +ST CMGQA SMG+ LLSAG KG RFALPN+R+
Sbjct: 61  YLYINSPGGVVTAGLAIYDTMNFIKPDVSTLCMGQACSMGAFLLSAGAKGKRFALPNSRV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG+ GQA+DI+ HAQ+I+K+K  L     ++C + +E+V +  +RD+ MSA EA
Sbjct: 121 MIHQPLGGYRGQATDIQIHAQEILKLKEMLTRKMAEHCSQPFEKVAQDTERDNFMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D V+  R
Sbjct: 181 KAYGLIDDVVTKR 193


>gi|282900541|ref|ZP_06308485.1| Peptidase S14, ClpP [Cylindrospermopsis raciborskii CS-505]
 gi|281194594|gb|EFA69547.1| Peptidase S14, ClpP [Cylindrospermopsis raciborskii CS-505]
          Length = 237

 Score =  277 bits (709), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 107/213 (50%), Positives = 151/213 (70%), Gaps = 1/213 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           M+ +      +      +VPMVVEQ+  GER++DIYSRLL+ERI+F+   I+D++A  I 
Sbjct: 17  MNIQCGYNNLNPTSPSSIVPMVVEQSGMGERAFDIYSRLLRERIIFLGTAIDDNVANSIV 76

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFL+AE+P+K++ LYINSPGG V AGMAIYDT+Q I+P + T C G AASMG+ LL+
Sbjct: 77  AQLLFLDAEDPEKDVQLYINSPGGSVYAGMAIYDTIQQIRPDVVTICFGLAASMGAFLLT 136

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG  G R +LP++RI++HQP GG  GQA DIE  A++I+ IK  LN++  K+ G+  E +
Sbjct: 137 AGTAGKRMSLPDSRIMIHQPLGGAQGQAIDIEIQAREILYIKANLNQLMSKHTGQPLERI 196

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
           E   +RD  MS  EA D+G++D+V+ SR ++  
Sbjct: 197 EADTERDFFMSPQEAKDYGLIDQVI-SRQNLPS 228


>gi|289422712|ref|ZP_06424552.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Peptostreptococcus anaerobius 653-L]
 gi|289156891|gb|EFD05516.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Peptostreptococcus anaerobius 653-L]
          Length = 194

 Score =  277 bits (709), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 110/194 (56%), Positives = 150/194 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP VVEQ  RGERSYDIYSRLLK+RI+F+  ++ D  A+L+ AQ+LFLEA++P K+I
Sbjct: 1   MALVPYVVEQDGRGERSYDIYSRLLKDRIIFLGDEVNDQTASLVVAQMLFLEADDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMAIYDTMQ+IK  +ST C+G AASMG+ LL+AG KG R+ALPN+ +
Sbjct: 61  HLYINSPGGSVTAGMAIYDTMQYIKADVSTICVGMAASMGAFLLAAGAKGKRYALPNSTV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DIE H + ++ IK +LN+I  +  G+  E V+   +RD+ M+A EA
Sbjct: 121 MIHQPLGGTRGQATDIEIHTKYLLSIKEKLNKILAERTGQDLETVKANTERDNFMTADEA 180

Query: 196 CDWGVVDKVLMSRI 209
            D+G++D+V+  R+
Sbjct: 181 RDFGLIDEVIAGRV 194


>gi|159030460|emb|CAO91362.1| clpP2 [Microcystis aeruginosa PCC 7806]
          Length = 233

 Score =  277 bits (709), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 102/202 (50%), Positives = 147/202 (72%), Gaps = 1/202 (0%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
            +    ++P+V+EQ+  GER++DIYSRLL+ERIVF+   ++D +A  I AQLL+LEAE+P
Sbjct: 25  RNSLANVLPVVIEQSGMGERAFDIYSRLLRERIVFLGTPVDDQVADSIVAQLLYLEAEDP 84

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+I LYINSPGG V AG+AIYDTMQ I+P ++T C G AASMG+ LL  G  G R +LP
Sbjct: 85  EKDIQLYINSPGGSVYAGLAIYDTMQQIRPDVATICFGLAASMGAFLLCGGAAGKRMSLP 144

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           ++RI++HQP GG  GQASDI   A++I+ IK+RLN +   + G+ Y+ +    +RD  MS
Sbjct: 145 SSRIMIHQPLGGAQGQASDIAIQAKEILYIKQRLNTMLAHHTGQPYDRIANDTERDFFMS 204

Query: 192 ASEACDWGVVDKVLMSRIDIEE 213
           A EA ++G++D V+ SR ++ +
Sbjct: 205 AVEAKEYGLIDLVI-SRPELPD 225


>gi|310816210|ref|YP_003964174.1| Protease subunit of ATP-dependent Clp protease [Ketogulonicigenium
           vulgare Y25]
 gi|308754945|gb|ADO42874.1| Protease subunit of ATP-dependent Clp protease [Ketogulonicigenium
           vulgare Y25]
          Length = 207

 Score =  277 bits (709), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 131/206 (63%), Positives = 174/206 (84%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  + ++ LVPMVVEQT+RGER+YDI+SRLLKERI+FV+G +ED M+ LI AQLL LEA
Sbjct: 2   RDPVETYMNLVPMVVEQTSRGERAYDIFSRLLKERIIFVSGVVEDGMSQLIVAQLLHLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEIS+YINSPGGVVT+G++IYDTMQ+I+P +ST  +GQAASMGSLLL+AGE GMR+
Sbjct: 62  ENPKKEISMYINSPGGVVTSGLSIYDTMQYIRPKVSTLVIGQAASMGSLLLAAGEAGMRY 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPN+R+++HQPSGGF GQ +DI  HA++  K+KRRLNEIYVK+ G++YE VE  L+RD+
Sbjct: 122 SLPNSRVMVHQPSGGFQGQVTDIMIHARESEKLKRRLNEIYVKHTGQSYEAVEAALERDN 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIEEK 214
             SA EA ++G++D++L  R +  EK
Sbjct: 182 FKSAEEAKEFGLIDEILEKRGETPEK 207


>gi|219885303|gb|ACL53026.1| unknown [Zea mays]
          Length = 302

 Score =  277 bits (709), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 117/193 (60%), Positives = 155/193 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+E T+RGER+YDI SRLLKERIV + G I D  A+L+ AQLLFLE+ENP K + 
Sbjct: 76  GLVPMVIETTSRGERAYDILSRLLKERIVCIHGPIADDTASLVVAQLLFLESENPLKPVH 135

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGVVTAG+AIYDTMQ+I+ P++T C+GQAASMGSLLL+AG  G R ALPNAR++
Sbjct: 136 LYINSPGGVVTAGLAIYDTMQYIRCPVTTLCIGQAASMGSLLLAAGAPGERRALPNARVM 195

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  GQA+DI   A++I+K++ RLN+IY K+  +  +++E+ ++RD  M   EA 
Sbjct: 196 IHQPSGGAQGQATDIAIQAKEILKMRDRLNKIYQKHTRQPIDKIEQCMERDLFMDPEEAR 255

Query: 197 DWGVVDKVLMSRI 209
           DWG++D+V+ +R 
Sbjct: 256 DWGLIDEVIENRP 268


>gi|157737934|ref|YP_001490618.1| ATP-dependent Clp protease proteolytic subunit [Arcobacter butzleri
           RM4018]
 gi|315637681|ref|ZP_07892886.1| ATP-dependent Clp protease proteolytic subunit [Arcobacter butzleri
           JV22]
 gi|167008646|sp|A8EVH5|CLPP_ARCB4 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|157699788|gb|ABV67948.1| ATP-dependent Clp protease, proteolytic subunit [Arcobacter
           butzleri RM4018]
 gi|315478028|gb|EFU68756.1| ATP-dependent Clp protease proteolytic subunit [Arcobacter butzleri
           JV22]
          Length = 194

 Score =  277 bits (709), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 109/192 (56%), Positives = 150/192 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P VVE+T RGERSYDIYSRLLK+RI+ ++G+I D +A+ + AQLLFLEAE+P K+I
Sbjct: 1   MSYIPYVVEKTGRGERSYDIYSRLLKDRIIMLSGEINDAVASTVVAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVT+GM+I+DTM +IKP + T C+GQAASMG+ LLS+G KG R++LPN+RI
Sbjct: 61  YLYINSPGGVVTSGMSIFDTMNYIKPDVCTICIGQAASMGAFLLSSGAKGKRYSLPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+  A++I ++K  LN I     G+ +  +EK  DRD+ MSA EA
Sbjct: 121 MIHQPLGGARGQATDIQIQAKEIQRLKDTLNGILASQTGQDFATIEKDTDRDNFMSAEEA 180

Query: 196 CDWGVVDKVLMS 207
           C +G++D+V+  
Sbjct: 181 CSYGLIDEVITK 192


>gi|86749681|ref|YP_486177.1| endopeptidase Clp [Rhodopseudomonas palustris HaA2]
 gi|116243157|sp|Q2IWZ4|CLPP_RHOP2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|86572709|gb|ABD07266.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Rhodopseudomonas palustris HaA2]
          Length = 212

 Score =  277 bits (709), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 137/202 (67%), Positives = 174/202 (86%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  + ++ LVPMVVEQTNRGER+YDI+SRLLKERI+F+TG +ED M+TL+ AQLLFLEA
Sbjct: 2   RDPVETYMNLVPMVVEQTNRGERAYDIFSRLLKERIIFLTGPVEDGMSTLVVAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEIS+YINSPGGVVT+G+AIYDTMQFI+PP+ST C GQAASMGSLLL+AG K MRF
Sbjct: 62  ENPKKEISMYINSPGGVVTSGLAIYDTMQFIRPPVSTLCTGQAASMGSLLLAAGHKDMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPNARI++HQPSGGF GQA+DI  HAQ+I+ +K+RLNEIYV + G+TY+ +E  L+RD 
Sbjct: 122 SLPNARIMVHQPSGGFQGQATDIMLHAQEILNLKKRLNEIYVHHTGQTYKAIEDALERDK 181

Query: 189 IMSASEACDWGVVDKVLMSRID 210
            ++A  A D+G+VDKV+  R +
Sbjct: 182 FLTADMARDFGIVDKVIDKRAE 203


>gi|189219051|ref|YP_001939692.1| ATP-dependent Clp protease proteolytic subunit [Methylacidiphilum
           infernorum V4]
 gi|189185909|gb|ACD83094.1| ATP-dependent Clp protease proteolytic subunit [Methylacidiphilum
           infernorum V4]
          Length = 219

 Score =  277 bits (709), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 116/202 (57%), Positives = 156/202 (77%)

Query: 8   KKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           K  +  +   ++PMVVEQT RGER YDI+SRLLK+RIVF+   I+D+MA L+ AQLLFL+
Sbjct: 2   KIMNSPIISQVIPMVVEQTGRGERGYDIFSRLLKDRIVFIGTPIDDNMANLVIAQLLFLQ 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
            E+P+K+I+LYI+SPGG VTAGMAIYDTMQF+   ++T+C+GQAASM ++LL+AG KG R
Sbjct: 62  MEDPKKDINLYIHSPGGYVTAGMAIYDTMQFLSCDVNTYCIGQAASMAAVLLAAGTKGKR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           FALPNARI++HQP GG  GQASDI   AQ+I++ KR LNEI   +  +  E +EK  DRD
Sbjct: 122 FALPNARIMIHQPLGGAQGQASDISIQAQEILRTKRLLNEILSYHTKQPLERIEKDTDRD 181

Query: 188 HIMSASEACDWGVVDKVLMSRI 209
             MSA +A  +G++D+V+ ++I
Sbjct: 182 FFMSAEDAKAYGIIDEVVKTKI 203


>gi|323697668|ref|ZP_08109580.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
           sp. ND132]
 gi|323457600|gb|EGB13465.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
           desulfuricans ND132]
          Length = 202

 Score =  277 bits (709), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 120/201 (59%), Positives = 163/201 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +PMV+E T R ER+YDIYSRLLK+RI+ +   I+DH+A+LICAQLLFLE+E+P+KEI
Sbjct: 1   MVAIPMVIETTGRTERAYDIYSRLLKDRIILLGTAIDDHVASLICAQLLFLESEDPEKEI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVT+GMAIYDTMQ+I  P++T CMGQAASM SLLL AGEKGMR++LP++RI
Sbjct: 61  YMYINSPGGVVTSGMAIYDTMQYISAPVATLCMGQAASMASLLLCAGEKGMRYSLPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQP GG  GQASDI  HA++I+++K  LN I  ++ G++ E++    DRD+ MS+ EA
Sbjct: 121 LIHQPLGGAQGQASDISIHAKEILRMKDELNGIMARHTGQSIEKITADTDRDYFMSSEEA 180

Query: 196 CDWGVVDKVLMSRIDIEEKSK 216
            ++G++DKV+ SR D++E  K
Sbjct: 181 LEYGLIDKVMKSRADVDESIK 201


>gi|218295537|ref|ZP_03496350.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermus
           aquaticus Y51MC23]
 gi|218244169|gb|EED10695.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermus
           aquaticus Y51MC23]
          Length = 194

 Score =  277 bits (709), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 106/190 (55%), Positives = 148/190 (77%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+EQT RGER YDIYSRLLK+RI+F+   I+  +A  I AQLLFL+A+NP +EI L
Sbjct: 2   VIPYVIEQTARGERVYDIYSRLLKDRIIFLGTPIDAQVANTIVAQLLFLDAQNPNQEIRL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+AIYDTMQF++ P+ST  +G AASM +++L+AGEKG R+ALP++++++
Sbjct: 62  YINSPGGEVDAGLAIYDTMQFVRAPVSTIVIGMAASMAAVILAAGEKGRRYALPHSKVMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  G ASDI   AQ+I+K K+ LNEI  K+ G+  E+VE+  DRD+ +SA EA +
Sbjct: 122 HQPWGGARGTASDIAIQAQEILKAKKLLNEILAKHTGQPLEKVERDTDRDYYLSAQEALE 181

Query: 198 WGVVDKVLMS 207
           +G++D+V+  
Sbjct: 182 YGLIDQVVTR 191


>gi|325266755|ref|ZP_08133428.1| ATP-dependent Clp protease, protease subunit [Kingella
           denitrificans ATCC 33394]
 gi|324981757|gb|EGC17396.1| ATP-dependent Clp protease, protease subunit [Kingella
           denitrificans ATCC 33394]
          Length = 209

 Score =  277 bits (708), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 125/196 (63%), Positives = 161/196 (82%), Gaps = 2/196 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ+ RGER++DIYSRLLKERI+F+ G ++DH A L+ AQLLFLE+ENP K+I  
Sbjct: 13  LVPTVIEQSGRGERAFDIYSRLLKERIIFLVGPVDDHTANLVVAQLLFLESENPDKDIYF 72

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM+IYDTM+FIKP + T C+GQAASMG+ LLSAG KG RFALPN+RI++
Sbjct: 73  YINSPGGSVTAGMSIYDTMKFIKPDVQTLCLGQAASMGAFLLSAGTKGKRFALPNSRIMI 132

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASDIE HA++++K+K +LN+I   + GK+ EEVE+  DRD+ MSA EA
Sbjct: 133 HQPLISGGLGGQASDIEIHARELLKLKEKLNKILADHTGKSIEEVERDTDRDNFMSAQEA 192

Query: 196 CDWGVVDKVLMSRIDI 211
            ++G++DKV+ SR D+
Sbjct: 193 MEYGLIDKVITSRNDV 208


>gi|71901066|ref|ZP_00683176.1| Peptidase S14, ClpP [Xylella fastidiosa Ann-1]
 gi|71729193|gb|EAO31314.1| Peptidase S14, ClpP [Xylella fastidiosa Ann-1]
          Length = 208

 Score =  277 bits (708), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 122/201 (60%), Positives = 163/201 (81%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           D     L LVPMVVEQT+RGER+YDIYSRLLKER++F+ G I+D+MA L+ AQLLFLEAE
Sbjct: 2   DDVTKALNLVPMVVEQTSRGERAYDIYSRLLKERLIFLVGPIDDYMANLVVAQLLFLEAE 61

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP+K+I++YINSPGGVVTAGMAIYDTMQ+IKP +ST C+GQAASMG+LLL++G  G R+A
Sbjct: 62  NPEKDINIYINSPGGVVTAGMAIYDTMQYIKPAVSTICVGQAASMGALLLASGASGKRYA 121

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPN+R+++HQP GGF GQA+DI+ HA++I+ ++ RLNEI  K+ G++ E +    +RD+ 
Sbjct: 122 LPNSRVMIHQPLGGFQGQATDIDIHAREILALRARLNEILAKHTGQSLETIAHDTERDNF 181

Query: 190 MSASEACDWGVVDKVLMSRID 210
            SA +A  +G+VD+V   R +
Sbjct: 182 KSAVDAQAYGLVDQVFGQRQE 202


>gi|94987236|ref|YP_595169.1| protease subunit of ATP-dependent Clp proteases [Lawsonia
           intracellularis PHE/MN1-00]
 gi|116243147|sp|Q1MQ79|CLPP_LAWIP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|94731485|emb|CAJ54848.1| Protease subunit of ATP-dependent Clp proteases [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 209

 Score =  277 bits (708), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 114/201 (56%), Positives = 167/201 (83%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           +D+F   VP+VVE   R ER+YDIYSRLLK+RIV +  ++ D +A+LICAQLLFLE+++P
Sbjct: 2   DDIFNMTVPIVVENNGRNERAYDIYSRLLKDRIVLLGTEVNDQVASLICAQLLFLESQDP 61

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +KEI LYINSPGG VTAG+AIYDTM +I P ++T CMG+AASMG+LLL+AGEK MR+ALP
Sbjct: 62  EKEIYLYINSPGGSVTAGLAIYDTMNYITPNVATVCMGRAASMGALLLAAGEKNMRYALP 121

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+++++HQP GG+ GQA+DI+ HA++I+++++RLNEI ++  G++ E+V +  +RD+ M+
Sbjct: 122 NSQVMIHQPLGGYQGQATDIDIHAREILRMRQRLNEILMEQTGQSLEKVAQDTERDYFMT 181

Query: 192 ASEACDWGVVDKVLMSRIDIE 212
           A +A  +G++DKVL+SR D++
Sbjct: 182 AEDAKAYGLIDKVLVSRKDLD 202


>gi|66515781|ref|XP_392540.2| PREDICTED: putative ATP-dependent Clp protease proteolytic subunit,
           mitochondrial-like [Apis mellifera]
          Length = 237

 Score =  277 bits (708), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 111/202 (54%), Positives = 160/202 (79%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
              +L  +P+VVEQ+ RGER+YDIYSRLLKERI+ + G I D++++++ AQLLFL++EN 
Sbjct: 19  SKRYLNFIPVVVEQSGRGERAYDIYSRLLKERIICLMGPITDNVSSVVIAQLLFLQSENS 78

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +  I +YINSPGG VTAG+ IYDTMQ++ PP++T+C+GQA SM SLLL+AG KGMR +LP
Sbjct: 79  KNPIHMYINSPGGSVTAGLGIYDTMQYVLPPVATWCVGQACSMASLLLAAGTKGMRHSLP 138

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           NARI+ HQPSGG SGQA+DI+  A +I+K+K+++N +YVK+ G   E++E+ ++RD+ MS
Sbjct: 139 NARIMTHQPSGGVSGQATDIQIQALEILKLKKQINNLYVKHTGLDLEKIERCMERDNFMS 198

Query: 192 ASEACDWGVVDKVLMSRIDIEE 213
             EA ++G++DKVL   +  +E
Sbjct: 199 PKEAKEFGIIDKVLSHPMQEDE 220


>gi|121602655|ref|YP_988860.1| ATP-dependent Clp protease proteolytic subunit [Bartonella
           bacilliformis KC583]
 gi|166201800|sp|A1USA7|CLPP_BARBK RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|120614832|gb|ABM45433.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bartonella
           bacilliformis KC583]
          Length = 210

 Score =  277 bits (708), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 149/207 (71%), Positives = 178/207 (85%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           D     L LVPMVVEQTNRGER+YDI+SRLLKERI+F+ G +ED MA L+CAQLLFLEAE
Sbjct: 3   DLVKTALSLVPMVVEQTNRGERAYDIFSRLLKERIIFINGPVEDSMAMLVCAQLLFLEAE 62

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP+KEISLYINSPGGVVT+GMAIYDTMQFI+PPIST CMGQAASMGSLLL+AG KG RF+
Sbjct: 63  NPKKEISLYINSPGGVVTSGMAIYDTMQFIRPPISTLCMGQAASMGSLLLTAGAKGHRFS 122

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPNARI++HQPSGGF GQASDIERHAQDI+++KR LNEIYV++ G+ YE +E TLDRDH 
Sbjct: 123 LPNARIMVHQPSGGFQGQASDIERHAQDIIRMKRHLNEIYVQHTGQDYEIIENTLDRDHF 182

Query: 190 MSASEACDWGVVDKVLMSRIDIEEKSK 216
           M+A EA  +G++D V+  R + +++ K
Sbjct: 183 MTAEEAKMFGLIDDVIQYRAETKKEEK 209


>gi|307177704|gb|EFN66732.1| Putative ATP-dependent Clp protease proteolytic subunit,
           mitochondrial [Camponotus floridanus]
          Length = 234

 Score =  277 bits (708), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 117/211 (55%), Positives = 162/211 (76%), Gaps = 1/211 (0%)

Query: 5   GCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLL 64
            C +K S    L  VP+VVEQ+ RGER+YDIYSRLLKERI+ + G I D +++ + AQLL
Sbjct: 13  ACGQKMSSRN-LNFVPIVVEQSGRGERAYDIYSRLLKERIICLMGPITDDVSSAVVAQLL 71

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           FL++E+ +  I LYINSPGG VTAG+ IYDTMQ++ PP+ST+C+GQA SM SLLL+AG K
Sbjct: 72  FLQSESSKNPIHLYINSPGGSVTAGLGIYDTMQYVLPPVSTWCVGQACSMASLLLAAGTK 131

Query: 125 GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
           GMR +LPNARI+ HQPSGG  GQA+DI+  A +I+K+K+++NE+YVK+ G+  E++EK +
Sbjct: 132 GMRHSLPNARIMTHQPSGGVQGQATDIQIQALEIIKLKKQINELYVKHTGQDLEKIEKGM 191

Query: 185 DRDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
           +RD+ MS +EA ++G++DKVL   +  E   
Sbjct: 192 ERDNFMSPTEAKEFGIIDKVLAHPMQEESAE 222


>gi|325983082|ref|YP_004295484.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nitrosomonas
           sp. AL212]
 gi|325532601|gb|ADZ27322.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nitrosomonas
           sp. AL212]
          Length = 213

 Score =  277 bits (708), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 120/202 (59%), Positives = 161/202 (79%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D E   LGL+PMV+E + RGER+YDIYSRLLKER+VF+ G + +  A L+ AQ LFLE+
Sbjct: 9   RDMEPKNLGLIPMVIETSGRGERAYDIYSRLLKERVVFLVGPVTEASANLVVAQFLFLES 68

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           EN +K+I  YINSPGG+V+AG+A+YDTMQ+IKP +ST C+GQAASMG+LLL+AG KG R+
Sbjct: 69  ENSEKDIFFYINSPGGMVSAGLAVYDTMQYIKPDVSTLCIGQAASMGALLLTAGAKGKRY 128

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
            LPN+R+++HQP GGF GQASDIE HA++I+ +K RLNEI  K+  +   ++EK  DRD+
Sbjct: 129 CLPNSRVMIHQPLGGFQGQASDIEIHAREILYLKSRLNEIMAKHTERPVSDLEKDTDRDN 188

Query: 189 IMSASEACDWGVVDKVLMSRID 210
            MSA+E+ ++G+VD VL SR D
Sbjct: 189 FMSATESVNYGLVDAVLSSRND 210


>gi|304440714|ref|ZP_07400598.1| ATP-dependent Clp protease proteolytic subunit [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304370901|gb|EFM24523.1| ATP-dependent Clp protease proteolytic subunit [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 194

 Score =  277 bits (708), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 111/193 (57%), Positives = 153/193 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+E TNRGER+YDIYSRLLKERI+F++G+I +  A L+ AQLLFLE+E+P K+I
Sbjct: 1   MALVPTVIEMTNRGERAYDIYSRLLKERIIFISGEINNVTADLVVAQLLFLESEDPNKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG V+AG AI+DTM +IKP +ST C+G AASMG+ LL+AG+KG RFALPN+ I
Sbjct: 61  QIYINSPGGSVSAGFAIFDTMNYIKPDVSTICIGMAASMGAFLLAAGKKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDI  HA+ I++I++R+N+I  +  G+  E++E   DRD+ +SA EA
Sbjct: 121 MIHQPLGGAQGQASDIMIHAEKIIEIRQRINKILAEETGQPLEKIEHDTDRDYFLSADEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++D V+  R
Sbjct: 181 KEYGLIDNVIRER 193


>gi|254504144|ref|ZP_05116295.1| Clp protease [Labrenzia alexandrii DFL-11]
 gi|222440215|gb|EEE46894.1| Clp protease [Labrenzia alexandrii DFL-11]
          Length = 213

 Score =  277 bits (708), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 139/211 (65%), Positives = 182/211 (86%), Gaps = 3/211 (1%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           KD  D+++  LVPMVVEQTNRGER++DIYSRLLKERI+F+TG +EDHMATL+ AQLL+LE
Sbjct: 2   KDPVDIYMNTLVPMVVEQTNRGERAFDIYSRLLKERIIFLTGPVEDHMATLVSAQLLYLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           A+NP KEI++YINSPGG+VT+G+AIYDTMQFI+P +ST C+GQAASMGSLLL+AGEK MR
Sbjct: 62  ADNPSKEIAIYINSPGGLVTSGLAIYDTMQFIRPSVSTLCIGQAASMGSLLLAAGEKDMR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           F LPNAR+++HQPSGGF GQA+DI  HAQ+I+ +KRRLNEIYVK+ G++ ++VE+ L+RD
Sbjct: 122 FILPNARVMVHQPSGGFRGQAADIMLHAQEILAMKRRLNEIYVKHTGRSLDQVEEALERD 181

Query: 188 HIMSASEACDWGVVDKVLMSRIDI--EEKSK 216
           + M+A +A ++G+VD V+  R  +  E +SK
Sbjct: 182 NFMTAEKAKEFGIVDSVITDRTSLGGENESK 212


>gi|260427575|ref|ZP_05781554.1| Clp protease [Citreicella sp. SE45]
 gi|260422067|gb|EEX15318.1| Clp protease [Citreicella sp. SE45]
          Length = 210

 Score =  277 bits (708), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 134/205 (65%), Positives = 174/205 (84%), Gaps = 1/205 (0%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           KD  D ++  LVPMVVEQT+RGER+YDI+SRLLKERI+FV+G + D M++LI AQLL LE
Sbjct: 2   KDPFDTYMNTLVPMVVEQTSRGERAYDIFSRLLKERIIFVSGPVHDGMSSLIVAQLLHLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AENP KEIS+YINSPGGVVT+G++IYDTMQ+IKP IST  +GQAASMGSLLL+AGE GMR
Sbjct: 62  AENPAKEISMYINSPGGVVTSGLSIYDTMQYIKPKISTLVIGQAASMGSLLLTAGEAGMR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           F+LPN+RI++HQPSGG+ GQA+DI  HA++ +K+KRRLNEIYV++ G+T E+VE  L+RD
Sbjct: 122 FSLPNSRIMVHQPSGGYQGQATDIMIHAEETLKLKRRLNEIYVRHTGQTLEKVEAALERD 181

Query: 188 HIMSASEACDWGVVDKVLMSRIDIE 212
           + MS  +A +WG++D+++ SR   E
Sbjct: 182 NFMSPEDAKEWGLIDEIVESRGAAE 206


>gi|256827324|ref|YP_003151283.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Cryptobacterium curtum DSM 15641]
 gi|256583467|gb|ACU94601.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Cryptobacterium curtum DSM 15641]
          Length = 207

 Score =  277 bits (708), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 106/200 (53%), Positives = 148/200 (74%)

Query: 14  VFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQK 73
               L+P V+EQ+ RGERS+DIYSRLL ERIVF+   I+D++A  + AQLL LE+ +P+K
Sbjct: 7   PSSALIPYVIEQSPRGERSFDIYSRLLNERIVFLGEAIDDNVANSVVAQLLHLESTDPEK 66

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +ISLYINSPGG VTAG+AI DTM +I   +ST C+GQ ASM ++LLS G KG R+ALPN 
Sbjct: 67  DISLYINSPGGSVTAGLAILDTMDYISCDVSTICIGQCASMAAVLLSNGTKGKRYALPNG 126

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           R+++HQPSGG  GQ ++I   A++I+ I+ RLN I  KN G++ E +++  +RD+ MSA 
Sbjct: 127 RVMIHQPSGGAQGQQTEIAIVAKEILYIRDRLNGILAKNTGQSLETIQQDTERDNFMSAE 186

Query: 194 EACDWGVVDKVLMSRIDIEE 213
            A ++G+VD+V+ SR   +E
Sbjct: 187 AAREYGLVDQVVTSRAAQKE 206


>gi|303257392|ref|ZP_07343405.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Burkholderiales bacterium 1_1_47]
 gi|302859749|gb|EFL82827.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Burkholderiales bacterium 1_1_47]
          Length = 209

 Score =  277 bits (708), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 110/201 (54%), Positives = 157/201 (78%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           D  +    L+PMV+EQ+ RGERS+DIYSRLL++R+VF+ G + D  A L+ AQLLFLE+E
Sbjct: 3   DFSNFNSALIPMVIEQSGRGERSFDIYSRLLRDRVVFLVGPVTDQSANLVVAQLLFLESE 62

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP K+ISLYI+SPGG V AG++IYDTMQFIKP +ST C+G AASMG+ LL+AG KG RFA
Sbjct: 63  NPDKDISLYIDSPGGSVYAGLSIYDTMQFIKPDVSTICLGMAASMGAFLLAAGAKGKRFA 122

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPN+RI++HQPSGG +G A+DIE  A++I++++ RLN I  ++ G++ E++    +RD+ 
Sbjct: 123 LPNSRIMIHQPSGGTNGTAADIEIQAKEILELRSRLNTILSEHTGQSIEKIAVDTERDNF 182

Query: 190 MSASEACDWGVVDKVLMSRID 210
           MS+++A ++G++D V   R +
Sbjct: 183 MSSAQAVEYGIIDGVFRKRSE 203


>gi|158321199|ref|YP_001513706.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Alkaliphilus
           oremlandii OhILAs]
 gi|167008645|sp|A8MIS8|CLPP_ALKOO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|158141398|gb|ABW19710.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Alkaliphilus
           oremlandii OhILAs]
          Length = 195

 Score =  277 bits (708), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 116/192 (60%), Positives = 151/192 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQTNRGERSYDIYSRLLKERI+F++ ++ D  A+L+ AQLLFLE+E+P K+I
Sbjct: 1   MALVPMVVEQTNRGERSYDIYSRLLKERIIFLSDEVNDATASLVVAQLLFLESEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +TAGMAIYDTM +IKP +ST C+G AASMG+ LL+AG+KG RFALPNA I
Sbjct: 61  QLYINSPGGSITAGMAIYDTMNYIKPDVSTICIGMAASMGAFLLTAGQKGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA DI  H + I+K++  LN+I  +  G+  E+V+K  DRD  M A EA
Sbjct: 121 MIHQPLGGTRGQAEDIRIHTERILKMRETLNKIIAERTGQPLEKVQKDTDRDFFMEAEEA 180

Query: 196 CDWGVVDKVLMS 207
             +G++D+V+ +
Sbjct: 181 RAYGIIDEVITT 192


>gi|241888864|ref|ZP_04776170.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Gemella
           haemolysans ATCC 10379]
 gi|241864540|gb|EER68916.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Gemella
           haemolysans ATCC 10379]
          Length = 215

 Score =  277 bits (708), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 101/195 (51%), Positives = 145/195 (74%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT++GER+YDIYSRLLK+RI+ +   + D +A  I +QLLFLEA++ +K+I
Sbjct: 1   MNLIPTVIEQTSQGERAYDIYSRLLKDRIIILGSDVNDQVANSITSQLLFLEAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG VTAG AIYDTMQ IK  + T CMG AASMG+ LL+AG  G R+ALPNA +
Sbjct: 61  YFYINSPGGSVTAGFAIYDTMQHIKCDVVTICMGMAASMGAFLLAAGTIGKRYALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I++ + +LN+I     G+T + +E+  +RD+ ++A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAARHILRTREKLNKILADRTGQTIKTIERDTERDNYLTAEEA 180

Query: 196 CDWGVVDKVLMSRID 210
           C++G+VDKV+    +
Sbjct: 181 CEYGLVDKVMYPENN 195


>gi|254460423|ref|ZP_05073839.1| Clp protease [Rhodobacterales bacterium HTCC2083]
 gi|206677012|gb|EDZ41499.1| Clp protease [Rhodobacteraceae bacterium HTCC2083]
          Length = 210

 Score =  277 bits (708), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 127/207 (61%), Positives = 171/207 (82%), Gaps = 1/207 (0%)

Query: 10  DSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           D  D ++  LVPMVVEQT+RGER+YDI+SRLLKERI+F+ G + D M++LI AQLL LEA
Sbjct: 3   DPIDTYMNTLVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMSSLIVAQLLHLEA 62

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP KEIS+YINSPGGVVT+G++IYDTMQ+I+P +ST  +GQAASMGSLLL+AGEK MRF
Sbjct: 63  ENPSKEISMYINSPGGVVTSGLSIYDTMQYIRPKVSTLVIGQAASMGSLLLTAGEKDMRF 122

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPN+R+++HQPSGG+ GQA+DI  HAQ+  K+K RLNEIYV++ G+T ++VE  L+RD+
Sbjct: 123 SLPNSRVMVHQPSGGYQGQATDIMIHAQETQKLKTRLNEIYVQHTGQTLKKVEAALERDN 182

Query: 189 IMSASEACDWGVVDKVLMSRIDIEEKS 215
            MS  EA ++G++D++L +R    ++ 
Sbjct: 183 FMSPEEAKEFGLIDEILQTRPKTGDEE 209


>gi|315650622|ref|ZP_07903682.1| ATP-dependent Clp protease proteolytic subunit [Eubacterium
           saburreum DSM 3986]
 gi|315487119|gb|EFU77441.1| ATP-dependent Clp protease proteolytic subunit [Eubacterium
           saburreum DSM 3986]
          Length = 193

 Score =  276 bits (707), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 105/192 (54%), Positives = 148/192 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+E T+RGER++DIYSRLLK+RI+F+  ++ D  A+L+ AQ+LFLE+E+P K+I
Sbjct: 1   MSLVPTVIESTSRGERAFDIYSRLLKDRIIFLGEEVNDVTASLVVAQILFLESEDPTKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGG V AGMAIYDTMQ++K  +ST CMG AASM + LL+ G KG R+ALPNA I
Sbjct: 61  NLYINSPGGSVVAGMAIYDTMQYVKCDVSTICMGMAASMAAFLLAGGTKGKRYALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I   A+ I+K + ++N+I  +N  +  E +E+  +RD+ MSA EA
Sbjct: 121 MIHQPSGGAQGQATEIRIAAEQILKTREKMNKILAENTNQPIEVIERDTERDNYMSAKEA 180

Query: 196 CDWGVVDKVLMS 207
            D+G++DKV+  
Sbjct: 181 LDYGIIDKVIEH 192


>gi|313680148|ref|YP_004057887.1| ATP-dependent clp protease proteolytic subunit clpp [Oceanithermus
           profundus DSM 14977]
 gi|313152863|gb|ADR36714.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oceanithermus
           profundus DSM 14977]
          Length = 194

 Score =  276 bits (707), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 109/190 (57%), Positives = 145/190 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP V+EQT RGER YDIYSRLLK+RI+F+   I+  +A  I AQ+LFLEA+NP +EI L
Sbjct: 2   IVPYVIEQTARGERVYDIYSRLLKDRIIFLGTPIDSQVANTIVAQMLFLEAQNPNQEIKL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+AIYDTMQ++K P++T  +G AASMG+ LL+AGE G R+ALP+AR+++
Sbjct: 62  YINSPGGDVYAGLAIYDTMQYVKSPVATIVVGMAASMGAFLLAAGEAGQRYALPHARVMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DI   A+ I+K K+ LNE+  K+ G+  E+VE   DRD  M+A EA D
Sbjct: 122 HQPWGGAQGQATDIAIQAEQILKSKKLLNELLAKHTGQPVEKVEADSDRDFWMTADEARD 181

Query: 198 WGVVDKVLMS 207
           +G+VD+V+  
Sbjct: 182 YGLVDRVIAR 191


>gi|254779232|ref|YP_003057337.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           B38]
 gi|254001143|emb|CAX29101.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           [Helicobacter pylori B38]
          Length = 196

 Score =  276 bits (707), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 113/196 (57%), Positives = 155/196 (79%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
            +G +P V+E T+RGERSYDIYSRLLK+RIV ++G+I D +A+ I AQLLFLEAE+P+K+
Sbjct: 1   MMGYIPYVIENTDRGERSYDIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKD 60

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I LYINSPGGV+T+G++IYDTM FI+P +ST C+GQAASMG+ LLS G KG RF+LP++R
Sbjct: 61  IGLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSR 120

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQP GG  GQASDIE  + +I+++K  +N I  +N G++ E++ K  DRD  MSA E
Sbjct: 121 IMIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKE 180

Query: 195 ACDWGVVDKVLMSRID 210
           A ++G++DKVL   + 
Sbjct: 181 AKEYGLIDKVLQKNMK 196


>gi|310829091|ref|YP_003961448.1| hypothetical protein ELI_3526 [Eubacterium limosum KIST612]
 gi|308740825|gb|ADO38485.1| hypothetical protein ELI_3526 [Eubacterium limosum KIST612]
          Length = 195

 Score =  276 bits (707), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 108/193 (55%), Positives = 150/193 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMV+EQT RGERS+DIYSRLLKERI+F+ G+I D  ++LI AQL+FLEA+NP K+I
Sbjct: 3   MNLVPMVIEQTGRGERSFDIYSRLLKERIIFLDGEINDTTSSLIVAQLIFLEADNPDKDI 62

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG +T+G AIYDTM FIK  +ST C+G AASMG+ LL+AG KG R ALPN+ I
Sbjct: 63  EMYINSPGGSITSGFAIYDTMNFIKCDVSTMCVGMAASMGAFLLAAGAKGKRKALPNSEI 122

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQ+ D+E +A+ ++K + +LNEI  +  G+  + + +  DRD+ MSA EA
Sbjct: 123 MIHQPLGGAQGQSVDVEIYAKRLIKTREKLNEILSEKTGQPIDVIARDTDRDNFMSAEEA 182

Query: 196 CDWGVVDKVLMSR 208
            ++G++D+++ SR
Sbjct: 183 LEYGLIDQIVSSR 195


>gi|23099911|ref|NP_693377.1| ATP-dependent Clp protease proteolytic subunit [Oceanobacillus
           iheyensis HTE831]
 gi|60389793|sp|Q8ENM5|CLPP_OCEIH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|22778142|dbj|BAC14412.1| ATP-dependent Clp protease proteolytic subunit [Oceanobacillus
           iheyensis HTE831]
          Length = 193

 Score =  276 bits (707), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 116/193 (60%), Positives = 155/193 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQTNRGER+YDIYSRLLK+RI+ +   I+D+++  I AQLLFLEAE+P K+I
Sbjct: 1   MNLVPTVIEQTNRGERAYDIYSRLLKDRIILLGSGIDDNVSNSIVAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG +TAGMAIYDTM FIKP +ST C+G AASMG+ LL+AGEKG RFALPN+ I
Sbjct: 61  SLYINSPGGSITAGMAIYDTMNFIKPNVSTICIGMAASMGAFLLTAGEKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DIE HA+ I+ IKRR+NEI  +  G+  E +E+  +RD+ M+A ++
Sbjct: 121 MIHQPLGGTQGQATDIEIHAKRIIDIKRRMNEIMAEKTGQPIEVIERDTERDNFMTADQS 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++DK+L  +
Sbjct: 181 VEYGLIDKILERK 193


>gi|242015536|ref|XP_002428409.1| ATP-dependent Clp protease proteolytic subunit, putative [Pediculus
           humanus corporis]
 gi|212513021|gb|EEB15671.1| ATP-dependent Clp protease proteolytic subunit, putative [Pediculus
           humanus corporis]
          Length = 252

 Score =  276 bits (707), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 112/201 (55%), Positives = 165/201 (82%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P+V+EQT RGER+YDIYSRLLKERI+ V GQI D +++++ AQLLFL++EN +K +
Sbjct: 39  VPLIPVVIEQTGRGERAYDIYSRLLKERIICVMGQIHDELSSVVIAQLLFLQSENSKKPV 98

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG VTAG+ IYDTMQ+I PP++T+C+GQA SM SLLL+AG  GMR ALPNARI
Sbjct: 99  HMYINSPGGSVTAGLGIYDTMQYILPPVATWCVGQACSMASLLLAAGASGMRHALPNARI 158

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+DI+  A++I+K+K+++N +YVK+ G + E++E++++RD  M+ S+A
Sbjct: 159 MIHQPSGGVQGQATDIQIQAEEILKLKKQINHLYVKHTGLSIEKIEQSMERDKFMNPSDA 218

Query: 196 CDWGVVDKVLMSRIDIEEKSK 216
            ++G++DK+L     + EK++
Sbjct: 219 KEFGIIDKILNHPPKLGEKAE 239


>gi|28198386|ref|NP_778700.1| ATP-dependent Clp protease proteolytic subunit [Xylella fastidiosa
           Temecula1]
 gi|182681028|ref|YP_001829188.1| ATP-dependent Clp protease proteolytic subunit [Xylella fastidiosa
           M23]
 gi|32129456|sp|Q87E51|CLPP_XYLFT RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706560|sp|B2I8K3|CLPP_XYLF2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|28056456|gb|AAO28349.1| ATP-dependent Clp protease proteolytic subunit [Xylella fastidiosa
           Temecula1]
 gi|182631138|gb|ACB91914.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Xylella
           fastidiosa M23]
 gi|307579496|gb|ADN63465.1| ATP-dependent Clp protease proteolytic subunit [Xylella fastidiosa
           subsp. fastidiosa GB514]
          Length = 208

 Score =  276 bits (707), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 123/201 (61%), Positives = 163/201 (81%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           D     L LVPMVVEQT+RGER+YDIYSRLLKER++F+ G I+D+MA LI AQLLFLEAE
Sbjct: 2   DDVTKALNLVPMVVEQTSRGERAYDIYSRLLKERLIFLVGPIDDYMANLIVAQLLFLEAE 61

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP+K+I++YINSPGGVVTAGMAIYDTMQ+IKP +ST C+GQAASMG+LLL++G  G R+A
Sbjct: 62  NPEKDINIYINSPGGVVTAGMAIYDTMQYIKPAVSTICVGQAASMGALLLASGASGKRYA 121

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPN+R+++HQP GGF GQA+DI+ HA++I+ ++ RLNEI  K+ G++ E +    +RD+ 
Sbjct: 122 LPNSRVMIHQPLGGFQGQATDIDIHAREILALRARLNEILAKHTGQSLETIAHDTERDNF 181

Query: 190 MSASEACDWGVVDKVLMSRID 210
            SA +A  +G+VD+V   R +
Sbjct: 182 KSAVDAQAYGLVDQVFGQRQE 202


>gi|114330232|ref|YP_746454.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nitrosomonas
           eutropha C91]
 gi|122314709|sp|Q0AJI2|CLPP_NITEC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|114307246|gb|ABI58489.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nitrosomonas
           eutropha C91]
          Length = 214

 Score =  276 bits (707), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 119/194 (61%), Positives = 155/194 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LGL+PMV+E + RGER+YDIYSRLL+ERI+F+ G + +  A L+ AQLLFLE+EN +K+I
Sbjct: 17  LGLIPMVIESSGRGERAYDIYSRLLRERIIFLVGPVTETSANLVIAQLLFLESENSEKDI 76

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG+VTAG+A+YDTMQFIKP +ST C+GQAASMG+LLL+AG KG R+ LPN+R+
Sbjct: 77  SLYINSPGGLVTAGLAVYDTMQFIKPDVSTLCIGQAASMGALLLTAGAKGKRYCLPNSRV 136

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQASDIE HA++I+ +K RLNEI  K+  +T   +EK  DRD+ + A  A
Sbjct: 137 MIHQPLGGFQGQASDIEIHAKEILALKGRLNEILAKHTSQTIRTIEKDTDRDNFLGAEAA 196

Query: 196 CDWGVVDKVLMSRI 209
             + +VD VL SR 
Sbjct: 197 VKYSLVDAVLTSRK 210


>gi|221234978|ref|YP_002517414.1| ATP-dependent Clp protease proteolytic subunit [Caulobacter
           crescentus NA1000]
 gi|220964150|gb|ACL95506.1| ATP-dependent endopeptidase clp, proteolytic subunit ClpP
           [Caulobacter crescentus NA1000]
          Length = 213

 Score =  276 bits (707), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 150/208 (72%), Positives = 178/208 (85%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
            D     + LVPMVVEQT+RGER++DI+SRLLKERI+F+TG +ED MA+LICAQLLFLE+
Sbjct: 6   YDPVSTAMNLVPMVVEQTSRGERAFDIFSRLLKERIIFLTGPVEDGMASLICAQLLFLES 65

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI++YINSPGGVVTAG+AIYDTMQ+IK P+ST CMG AASMGSLLL+AG  G R 
Sbjct: 66  ENPKKEIAMYINSPGGVVTAGLAIYDTMQYIKSPVSTVCMGMAASMGSLLLAAGAAGQRI 125

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPNARI++HQPSGGF GQASDIERHA+DI+K KRRLNEIYVK+CG+TYEEVE+TLDRDH
Sbjct: 126 SLPNARIMVHQPSGGFRGQASDIERHAEDIIKTKRRLNEIYVKHCGRTYEEVERTLDRDH 185

Query: 189 IMSASEACDWGVVDKVLMSRIDIEEKSK 216
            MSA EA  WG+VD V  SR   E  ++
Sbjct: 186 FMSADEAKAWGLVDHVYDSRDAAEAGAE 213


>gi|220927143|ref|YP_002502445.1| ATP-dependent Clp protease proteolytic subunit [Methylobacterium
           nodulans ORS 2060]
 gi|254763797|sp|B8IN26|CLPP_METNO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|219951750|gb|ACL62142.1| peptidase S14 ClpP [Methylobacterium nodulans ORS 2060]
          Length = 209

 Score =  276 bits (707), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 132/208 (63%), Positives = 173/208 (83%), Gaps = 1/208 (0%)

Query: 9   KDSEDVF-LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           +D  + +   LVPMVVEQ++RGER++DIYSRLL+ERI+F+TG +ED+ A+LI AQLLFLE
Sbjct: 2   RDPVEFYNSALVPMVVEQSSRGERAFDIYSRLLRERIIFLTGPVEDYSASLIVAQLLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AENP+KEIS YINSPGGVVT+G++IYDTMQFI+ P++T C+GQAASMGSLLL+AGE G R
Sbjct: 62  AENPKKEISFYINSPGGVVTSGLSIYDTMQFIRCPVATLCVGQAASMGSLLLAAGEPGHR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           FALPNARI++HQPSGGF GQA+DI  HA++I  +KRRLNEIYVK+ G+ Y+ +E  L+RD
Sbjct: 122 FALPNARIMVHQPSGGFQGQATDILIHAREIEALKRRLNEIYVKHTGRDYDTIELGLERD 181

Query: 188 HIMSASEACDWGVVDKVLMSRIDIEEKS 215
           + M+A  A +WG++D+VL  R +    +
Sbjct: 182 NFMTADAAREWGLIDEVLQKRAEASPAA 209


>gi|116243166|sp|Q1GGF6|CLPP_SILST RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
          Length = 210

 Score =  276 bits (707), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 126/207 (60%), Positives = 173/207 (83%), Gaps = 1/207 (0%)

Query: 10  DSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           D  + ++  LVPMVVEQT+RGER+YDI+SRLLKERI+F+ G + D M++LI AQLL LEA
Sbjct: 3   DPTETYMNTLVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMSSLIVAQLLHLEA 62

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP KEIS+YINSPGGVVT+G++IYDTMQ+IKP +ST  +GQAASMGSLLL+AGE GMRF
Sbjct: 63  ENPSKEISMYINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLTAGEAGMRF 122

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPN+R+++HQPSGG+ GQA+DI  HA++ +K+KRRLNEIYVK+ G+ Y+ +EK L+RD+
Sbjct: 123 SLPNSRVMVHQPSGGYQGQATDIMIHAEETLKLKRRLNEIYVKHTGQDYDTIEKALERDN 182

Query: 189 IMSASEACDWGVVDKVLMSRIDIEEKS 215
            MS  +A ++G++D+++ +R   ++  
Sbjct: 183 FMSPEQAKEFGLIDEIVENRSKADDAE 209


>gi|67924586|ref|ZP_00518001.1| Peptidase S14, ClpP [Crocosphaera watsonii WH 8501]
 gi|67853560|gb|EAM48904.1| Peptidase S14, ClpP [Crocosphaera watsonii WH 8501]
          Length = 202

 Score =  276 bits (707), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 99/192 (51%), Positives = 141/192 (73%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+E + RGER++DIYSRLL+ERIVF+  ++ D  + LI AQLLFLEAE+P K+I L
Sbjct: 1   MIPTVIETSGRGERAFDIYSRLLRERIVFLGQEVRDENSNLIVAQLLFLEAEDPDKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG+ I+DTM  I+P + T C+G AASMG+ LLSAG KG R +LPN+RI++
Sbjct: 61  YINSPGGSVSAGLGIFDTMNQIRPDVCTICIGLAASMGAFLLSAGTKGKRMSLPNSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+ +K  LN     +  +  +++ +  +RD  MSA EA +
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYLKGLLNNHLASHTEQPLDKIAEDTERDFFMSAEEAQE 180

Query: 198 WGVVDKVLMSRI 209
           +G++D+V+  R 
Sbjct: 181 YGLIDQVINRRP 192


>gi|326790230|ref|YP_004308051.1| ATP-dependent Clp protease proteolytic subunit ClpP [Clostridium
           lentocellum DSM 5427]
 gi|326540994|gb|ADZ82853.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           lentocellum DSM 5427]
          Length = 193

 Score =  276 bits (707), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 108/193 (55%), Positives = 145/193 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMV+EQTNRGERSYDIYSRLLK+RI+ +  ++ +  A LI AQLLFLEAE+P K+I
Sbjct: 1   MSLVPMVIEQTNRGERSYDIYSRLLKDRIIILGDEVNNVTANLIVAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG +T GMAIYDTMQ+IK  +ST CMG AASMG+ LL+ G KG RFALPNA +
Sbjct: 61  MFYINSPGGSITDGMAIYDTMQYIKCDVSTICMGMAASMGAFLLAGGTKGKRFALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+  AQ I+K K R+N +  +  G+  E +   ++RD+  +A EA
Sbjct: 121 MIHQPLGGAKGQATDIQITAQHIIKTKERMNRMLSEFTGQPIERINNDVERDNWKTAEEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++D ++ S+
Sbjct: 181 KEYGLIDDIITSK 193


>gi|112823618|gb|ABI25707.1| ATP-dependent Clp protease proteolytic subunit ClpP [Haemophilus
           somnus 129PT]
          Length = 188

 Score =  276 bits (707), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 122/188 (64%), Positives = 156/188 (82%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MVVEQT+RGERSYDIYSRLLKER++F+TG++ED MA LI AQLLFLEAE+P K+I++YIN
Sbjct: 1   MVVEQTSRGERSYDIYSRLLKERVIFLTGEVEDRMANLIVAQLLFLEAEDPAKDINIYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGG VTAGMAIYDTMQFIKP + T C+GQA SMG+ LL+ G  G R ALP+AR+++HQP
Sbjct: 61  SPGGSVTAGMAIYDTMQFIKPDVRTLCIGQACSMGAFLLAGGTAGKRAALPHARVMIHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            GGF GQASDI+ HAQ+I+KIK+ LNE    + G++ E++E+  DRD+ MSA +A  +G+
Sbjct: 121 LGGFRGQASDIQIHAQEILKIKQTLNERLAFHTGQSIEQIEQDTDRDNFMSAEQAKLYGL 180

Query: 201 VDKVLMSR 208
           VD+VL+ R
Sbjct: 181 VDEVLIKR 188


>gi|58038575|ref|YP_190539.1| ATP-dependent Clp protease proteolytic subunit [Gluconobacter
           oxydans 621H]
 gi|67460438|sp|Q5FUR3|CLPP1_GLUOX RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|58000989|gb|AAW59883.1| ATP-dependent Clp protease proteolytic subunit [Gluconobacter
           oxydans 621H]
          Length = 215

 Score =  276 bits (707), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 128/208 (61%), Positives = 172/208 (82%), Gaps = 4/208 (1%)

Query: 1   MSFEGCAKKDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLI 59
           M+      +D  +VF   LVPMVVEQT RGERS+DI+SRLL+ERI+F+TG + D +++LI
Sbjct: 1   MTIR---DRDPLEVFSNSLVPMVVEQTARGERSFDIFSRLLQERIIFLTGPVYDQVSSLI 57

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
           CAQLL+LE+ NP KEIS YINSPGGVV+AG+AIYDTMQ+I+ P+ST C+GQAASMGSLLL
Sbjct: 58  CAQLLYLESVNPTKEISFYINSPGGVVSAGLAIYDTMQYIRCPVSTVCIGQAASMGSLLL 117

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
           + GEKG R+ALPNAR+++HQPSGG  GQASDIE  A++I+ I++RLNEIY ++ G+T E+
Sbjct: 118 AGGEKGHRYALPNARVMVHQPSGGAQGQASDIEIQAREILIIRQRLNEIYREHTGQTLEQ 177

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVLMS 207
           +E+ L+RD  +SA+EA ++G++DKV+  
Sbjct: 178 IEQKLERDSYLSANEAREFGLIDKVVER 205


>gi|291278625|ref|YP_003495460.1| ATP-dependent Clp protease proteolytic subunit [Deferribacter
           desulfuricans SSM1]
 gi|290753327|dbj|BAI79704.1| ATP-dependent Clp protease, proteolytic subunit [Deferribacter
           desulfuricans SSM1]
          Length = 195

 Score =  276 bits (707), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 117/190 (61%), Positives = 152/190 (80%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP VVEQT RGER YDIYSRLLK+RI+F+   I+D++A ++ AQ+LFLEAE+P K+I LY
Sbjct: 5   VPYVVEQTGRGERVYDIYSRLLKDRIIFLGTAIDDNVANVVIAQMLFLEAEDPDKDIYLY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGV+T+G+AIYDTM +IKP +ST C+GQAASM ++LLS+G KG RFALPNARI++H
Sbjct: 65  INSPGGVITSGLAIYDTMNYIKPDVSTICIGQAASMAAVLLSSGAKGKRFALPNARIMIH 124

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GGF GQA DIE HA +I+++K+ LNEI  KN G+  E++E   DRD  MSA EA ++
Sbjct: 125 QPLGGFQGQAKDIEIHANEILRMKKMLNEILSKNTGQPIEKIEMDSDRDFFMSAMEAKEY 184

Query: 199 GVVDKVLMSR 208
           G++D  +  R
Sbjct: 185 GLIDDCIEKR 194


>gi|118590047|ref|ZP_01547451.1| ATP-dependent Clp protease proteolytic subunit [Stappia aggregata
           IAM 12614]
 gi|118437544|gb|EAV44181.1| ATP-dependent Clp protease proteolytic subunit [Stappia aggregata
           IAM 12614]
          Length = 211

 Score =  276 bits (707), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 138/201 (68%), Positives = 179/201 (89%), Gaps = 1/201 (0%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           KD  D+++  LVPMVVEQTNRGER++DIYSRLLKERI+F+TG +EDHMATL+ AQLL+LE
Sbjct: 2   KDPVDIYMNTLVPMVVEQTNRGERAFDIYSRLLKERIIFLTGPVEDHMATLVSAQLLYLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AENP KEI++YINSPGG+VT+G+AIYDTMQFI+P +ST C+GQAASMGSLLL+AGEKGMR
Sbjct: 62  AENPSKEIAIYINSPGGLVTSGLAIYDTMQFIRPAVSTLCIGQAASMGSLLLAAGEKGMR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           + LPNAR+++HQPSGGF GQA+DI  HAQ+I+ +KRRLN+IYVK+ G+T ++VE+ L+RD
Sbjct: 122 YILPNARVMVHQPSGGFRGQAADIMLHAQEILAMKRRLNDIYVKHTGRTLDQVEEALERD 181

Query: 188 HIMSASEACDWGVVDKVLMSR 208
           + M+A +A ++G+VDKV+  R
Sbjct: 182 NFMTAEKAKEFGIVDKVITDR 202


>gi|90407420|ref|ZP_01215604.1| ATP-dependent Clp protease proteolytic subunit [Psychromonas sp.
           CNPT3]
 gi|90311451|gb|EAS39552.1| ATP-dependent Clp protease proteolytic subunit [Psychromonas sp.
           CNPT3]
          Length = 207

 Score =  276 bits (707), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 117/193 (60%), Positives = 154/193 (79%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            L+PMVVEQT +GERSYDIYSRLLKER++F+TGQ+ED MA +I AQLLFLE+E+P+K+IS
Sbjct: 15  TLIPMVVEQTAKGERSYDIYSRLLKERVIFLTGQVEDQMANVITAQLLFLESESPEKDIS 74

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG ++AGMAIYDTMQFIKP +ST CMG AASMG+ LL++G  G R  LPNA+++
Sbjct: 75  IYINSPGGSISAGMAIYDTMQFIKPDVSTVCMGMAASMGAFLLASGAPGKRHCLPNAKVM 134

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASD E HA++I+  K+ +NE+   + G+  + V K  DRD+ M A+EA 
Sbjct: 135 IHQPLGGFQGQASDFEIHAKEILATKKLMNELLAFHTGQDIDVVTKDTDRDNFMRANEAL 194

Query: 197 DWGVVDKVLMSRI 209
           ++G+VD +L  R 
Sbjct: 195 EYGIVDSILTKRK 207


>gi|99081368|ref|YP_613522.1| ATP-dependent Clp protease proteolytic subunit [Ruegeria sp.
           TM1040]
 gi|99037648|gb|ABF64260.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ruegeria sp.
           TM1040]
          Length = 218

 Score =  276 bits (707), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 126/207 (60%), Positives = 173/207 (83%), Gaps = 1/207 (0%)

Query: 10  DSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           D  + ++  LVPMVVEQT+RGER+YDI+SRLLKERI+F+ G + D M++LI AQLL LEA
Sbjct: 11  DPTETYMNTLVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMSSLIVAQLLHLEA 70

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP KEIS+YINSPGGVVT+G++IYDTMQ+IKP +ST  +GQAASMGSLLL+AGE GMRF
Sbjct: 71  ENPSKEISMYINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLTAGEAGMRF 130

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPN+R+++HQPSGG+ GQA+DI  HA++ +K+KRRLNEIYVK+ G+ Y+ +EK L+RD+
Sbjct: 131 SLPNSRVMVHQPSGGYQGQATDIMIHAEETLKLKRRLNEIYVKHTGQDYDTIEKALERDN 190

Query: 189 IMSASEACDWGVVDKVLMSRIDIEEKS 215
            MS  +A ++G++D+++ +R   ++  
Sbjct: 191 FMSPEQAKEFGLIDEIVENRSKADDAE 217


>gi|126733145|ref|ZP_01748892.1| Clp protease, putative [Roseobacter sp. CCS2]
 gi|126716011|gb|EBA12875.1| Clp protease, putative [Roseobacter sp. CCS2]
          Length = 206

 Score =  276 bits (707), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 125/205 (60%), Positives = 169/205 (82%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  + ++ LVPMVVEQT RGER+YDI+SRLLKERI+FV G + D M+ LI AQLL LE+
Sbjct: 2   QDPTETYMNLVPMVVEQTARGERAYDIFSRLLKERIIFVNGPVHDGMSQLIVAQLLHLES 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEIS+YINSPGGVVT+G++IYDTMQ+I+P +ST  +GQAASMGSLLL+AG +GMRF
Sbjct: 62  ENPKKEISMYINSPGGVVTSGLSIYDTMQYIRPKVSTLVIGQAASMGSLLLTAGSEGMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPN+R+++HQPSGG+ GQA+DI  HA +  K+K RLNEIYVK+ G T ++VE  L+RD+
Sbjct: 122 SLPNSRVMVHQPSGGYQGQATDIMIHAAETQKLKTRLNEIYVKHTGNTLKKVEAALERDN 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIEE 213
            MS  EA +WG++D+++ +R   ++
Sbjct: 182 FMSPEEAKEWGLIDEIVENRTKSDD 206


>gi|299536206|ref|ZP_07049519.1| ATP-dependent Clp protease proteolytic subunit [Lysinibacillus
           fusiformis ZC1]
 gi|298728192|gb|EFI68754.1| ATP-dependent Clp protease proteolytic subunit [Lysinibacillus
           fusiformis ZC1]
          Length = 196

 Score =  276 bits (707), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 107/197 (54%), Positives = 149/197 (75%), Gaps = 1/197 (0%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT+RGER+YDIYSRLLK+RI+ +   I+D++A  I AQLLFL+AE+P K+I
Sbjct: 1   MNLIPTVIEQTSRGERAYDIYSRLLKDRIILLGSAIDDNVANSIVAQLLFLQAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG +TAGMAIYDTMQ IKP + T C+G AASMG+ LL+AGE G RFALPNA +
Sbjct: 61  SLYINSPGGSITAGMAIYDTMQIIKPQVQTICIGMAASMGAFLLAAGEPGKRFALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN I  +  G+  E + +  DRD+ M+A  A
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILFLREKLNGILSERTGQPLEVIARDTDRDNFMTAERA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G++D ++  R D +
Sbjct: 181 KEYGLIDHIM-HRSDNK 196


>gi|224030041|gb|ACN34096.1| unknown [Zea mays]
          Length = 259

 Score =  276 bits (707), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 120/193 (62%), Positives = 156/193 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+E T+RGER+YDI+SRLLKERIV + G I D  A+L+ AQLLFLE+ENP K + 
Sbjct: 35  GLVPMVIEHTSRGERAYDIFSRLLKERIVCIHGPITDDTASLVVAQLLFLESENPAKPVH 94

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGVVTAG+AIYDTMQ+I+ P++T C+GQAASM SLLL+AG  G R ALPNAR++
Sbjct: 95  LYINSPGGVVTAGLAIYDTMQYIRSPVTTLCIGQAASMASLLLAAGASGERRALPNARVM 154

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG SGQASDI  HA++I+K++ RLN+IY K+ G+  + +E+ ++RD  M   EA 
Sbjct: 155 IHQPSGGASGQASDIAIHAKEILKVRDRLNKIYAKHTGQAIDRIEQCMERDMFMDPEEAH 214

Query: 197 DWGVVDKVLMSRI 209
           DWG++D+V+  R 
Sbjct: 215 DWGLIDEVIEHRP 227


>gi|114771109|ref|ZP_01448549.1| Protease subunit of ATP-dependent Clp protease [alpha
           proteobacterium HTCC2255]
 gi|114548391|gb|EAU51277.1| Protease subunit of ATP-dependent Clp protease [alpha
           proteobacterium HTCC2255]
          Length = 204

 Score =  276 bits (707), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 140/203 (68%), Positives = 176/203 (86%), Gaps = 1/203 (0%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           +D  +V+   LVPMVVEQT+RGERS+DI+SRLLKERI+FV+G + D M+TLI AQLLFLE
Sbjct: 2   RDPLEVYNNTLVPMVVEQTSRGERSFDIFSRLLKERIIFVSGPVHDGMSTLIVAQLLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AENP+K+IS+YINSPGGVVTAGMAIYDTMQ+I+P +ST C+GQAASMGSLLL+AGEKGMR
Sbjct: 62  AENPKKDISMYINSPGGVVTAGMAIYDTMQYIRPKVSTLCVGQAASMGSLLLAAGEKGMR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           FALPNAR+++HQPSGGFSGQASDI  HA++I+++K RLN+IYVK+C +    VE  LDRD
Sbjct: 122 FALPNARVMVHQPSGGFSGQASDIALHAKEILELKDRLNKIYVKHCSQKLSTVEDALDRD 181

Query: 188 HIMSASEACDWGVVDKVLMSRID 210
           + M+A EA DWG++D+++  R D
Sbjct: 182 NFMTAEEAKDWGLIDEIVQKRED 204


>gi|226501814|ref|NP_001150578.1| LOC100284211 [Zea mays]
 gi|195640324|gb|ACG39630.1| ATP-dependent Clp protease proteolytic subunit [Zea mays]
          Length = 260

 Score =  276 bits (707), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 120/193 (62%), Positives = 156/193 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+E T+RGER+YDI+SRLLKERIV + G I D  A+L+ AQLLFLE+ENP K + 
Sbjct: 36  GLVPMVIEHTSRGERAYDIFSRLLKERIVCIHGPITDDTASLVVAQLLFLESENPAKPVH 95

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGVVTAG+AIYDTMQ+I+ P++T C+GQAASM SLLL+AG  G R ALPNAR++
Sbjct: 96  LYINSPGGVVTAGLAIYDTMQYIRSPVTTLCIGQAASMASLLLAAGASGQRRALPNARVM 155

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG SGQASDI  HA++I+K++ RLN+IY K+ G+  + +E+ ++RD  M   EA 
Sbjct: 156 IHQPSGGASGQASDIAIHAKEILKVRDRLNKIYAKHTGQAIDRIEQCMERDMFMDPEEAH 215

Query: 197 DWGVVDKVLMSRI 209
           DWG++D+V+  R 
Sbjct: 216 DWGLIDEVIEHRP 228


>gi|222824462|ref|YP_002576036.1| ATP-dependent ClpAP/ClpXP protease, proteolytic subunit ClpP
           [Campylobacter lari RM2100]
 gi|254763785|sp|B9KDZ6|CLPP_CAMLR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|222539683|gb|ACM64784.1| ATP-dependent ClpAP/ClpXP protease, proteolytic subunit ClpP
           [Campylobacter lari RM2100]
          Length = 196

 Score =  276 bits (707), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 115/193 (59%), Positives = 149/193 (77%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
               +P VVE+T+RGERSYDIYSRLLK+RI+ ++G+I D +A  I AQLLFLEAE+PQK+
Sbjct: 1   MSSYIPYVVEKTSRGERSYDIYSRLLKDRIIMLSGEINDDLAASIVAQLLFLEAEDPQKD 60

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I LYINSPGGVVT+G +IYDTM +IK  +ST C+GQAASMG+ LLS G  G RFALPN+R
Sbjct: 61  IYLYINSPGGVVTSGFSIYDTMNYIKADVSTICIGQAASMGAFLLSCGAPGKRFALPNSR 120

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQP GG  GQA+DIE  A++I+++K  LN+I  KN  +   ++EK  DRD  MSA E
Sbjct: 121 IMIHQPLGGARGQATDIEIQAKEILRLKAILNDILAKNTKQKLSKIEKDTDRDFFMSAIE 180

Query: 195 ACDWGVVDKVLMS 207
           A ++G++DKVL  
Sbjct: 181 AKEYGLIDKVLEK 193


>gi|114569888|ref|YP_756568.1| ATP-dependent Clp protease proteolytic subunit ClpP [Maricaulis
           maris MCS10]
 gi|122316141|sp|Q0AQ07|CLPP_MARMM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|114340350|gb|ABI65630.1| ATP-dependent Clp protease proteolytic subunit ClpP [Maricaulis
           maris MCS10]
          Length = 211

 Score =  276 bits (706), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 147/205 (71%), Positives = 179/205 (87%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           D +DV + LVP+VVEQT+RGERS+DIYSRLLKERI+F+TG IEDHMA+LI AQLLFLE+E
Sbjct: 3   DPQDVMMNLVPIVVEQTSRGERSFDIYSRLLKERIIFITGPIEDHMASLIIAQLLFLESE 62

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP+KEIS+YINSPGGVV+AG+ IYDTMQ+I+ P+ST C+G AASMGSLLL+AGEK MRFA
Sbjct: 63  NPKKEISMYINSPGGVVSAGLGIYDTMQYIRSPVSTMCLGMAASMGSLLLTAGEKDMRFA 122

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
            PNARI++HQPSGGF GQASDIERHA DI KIKRRLNEIYV + G+TY+E+E  LDRD+ 
Sbjct: 123 APNARIMVHQPSGGFRGQASDIERHAADIQKIKRRLNEIYVHHTGRTYDEIESALDRDNF 182

Query: 190 MSASEACDWGVVDKVLMSRIDIEEK 214
           MSA E  ++G+VDKV+  R + E++
Sbjct: 183 MSAQEGLEFGLVDKVIERRAEDEKE 207


>gi|33864600|ref|NP_896159.1| ATP-dependent Clp protease proteolytic subunit 2 [Synechococcus sp.
           WH 8102]
 gi|67460511|sp|Q7UA36|CLPP1_SYNPX RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|33632123|emb|CAE06579.1| ATP-dependent Clp protease proteolytic subunit 2 [Synechococcus sp.
           WH 8102]
          Length = 224

 Score =  276 bits (706), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 101/191 (52%), Positives = 143/191 (74%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G +P VVEQ+ RG+R++DIYSRLL+ERI+F+   ++D +A  + AQ+LFLEAE+P+K+I 
Sbjct: 24  GPLPTVVEQSGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDIQ 83

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VTAG+AIYDTMQ + P + T C G AASMG+ LLS G KG R ALPNARI+
Sbjct: 84  IYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGCKGKRLALPNARIM 143

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA DIE  A++I+ +K  LN +   + G+  +++ +  DRD+ +S +EA 
Sbjct: 144 IHQPLGGAQGQAVDIEIQAKEILFLKETLNGLMADHTGQPLDKIAEDTDRDYFLSPAEAV 203

Query: 197 DWGVVDKVLMS 207
            +G++D+V+ S
Sbjct: 204 QYGLIDRVVDS 214


>gi|329767857|ref|ZP_08259372.1| ATP-dependent Clp protease proteolytic subunit [Gemella haemolysans
           M341]
 gi|328838776|gb|EGF88373.1| ATP-dependent Clp protease proteolytic subunit [Gemella haemolysans
           M341]
          Length = 215

 Score =  276 bits (706), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 101/195 (51%), Positives = 145/195 (74%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT++GER+YDIYSRLLK+RI+ +   + D +A  I +QLLFLEA++ +K+I
Sbjct: 1   MNLIPTVIEQTSQGERAYDIYSRLLKDRIIILGSDVNDQVANSITSQLLFLEAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG VTAG AIYDTMQ IK  + T CMG AASMG+ LL+AG  G R+ALPNA +
Sbjct: 61  YFYINSPGGSVTAGFAIYDTMQHIKCDVVTICMGMAASMGAFLLAAGTIGKRYALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I++ + +LN+I     G+T + +E+  +RD+ ++A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKHILRTREKLNKILADRTGQTIKAIERDTERDNYLTAEEA 180

Query: 196 CDWGVVDKVLMSRID 210
           C++G+VDKV+    +
Sbjct: 181 CEYGLVDKVMYPENN 195


>gi|317970010|ref|ZP_07971400.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           CB0205]
          Length = 196

 Score =  276 bits (706), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 99/192 (51%), Positives = 137/192 (71%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+E++ RGER++DIYSRLL+ERIVF+   +    A  I AQLLFLEAE+P+K+I L
Sbjct: 1   MIPIVIEESGRGERAFDIYSRLLRERIVFLGEPVTSESANRIVAQLLFLEAEDPEKDIFL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I+DTMQ IKP + T C+G AASMG+ LL AG KG R +L ++RI++
Sbjct: 61  YINSPGGSVYDGLGIFDTMQHIKPDVQTVCVGLAASMGAFLLCAGAKGKRSSLTHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A +I+ +K++LN+      G+    +E   DRD  MS +EA +
Sbjct: 121 HQPLGGAQGQASDIRIQADEILYLKKKLNQELSDRTGQPLNRIEDDTDRDFFMSPAEAVE 180

Query: 198 WGVVDKVLMSRI 209
           +G++DKV+  R 
Sbjct: 181 YGLIDKVIDKRP 192


>gi|185177785|pdb|2ZL3|A Chain A, Crystal Structure Of H.Pylori Clpp S99a
 gi|185177786|pdb|2ZL3|B Chain B, Crystal Structure Of H.Pylori Clpp S99a
 gi|185177787|pdb|2ZL3|C Chain C, Crystal Structure Of H.Pylori Clpp S99a
 gi|185177788|pdb|2ZL3|D Chain D, Crystal Structure Of H.Pylori Clpp S99a
 gi|185177789|pdb|2ZL3|E Chain E, Crystal Structure Of H.Pylori Clpp S99a
 gi|185177790|pdb|2ZL3|F Chain F, Crystal Structure Of H.Pylori Clpp S99a
 gi|185177791|pdb|2ZL3|G Chain G, Crystal Structure Of H.Pylori Clpp S99a
 gi|185177792|pdb|2ZL3|H Chain H, Crystal Structure Of H.Pylori Clpp S99a
 gi|185177793|pdb|2ZL3|I Chain I, Crystal Structure Of H.Pylori Clpp S99a
 gi|185177794|pdb|2ZL3|J Chain J, Crystal Structure Of H.Pylori Clpp S99a
 gi|185177795|pdb|2ZL3|K Chain K, Crystal Structure Of H.Pylori Clpp S99a
 gi|185177796|pdb|2ZL3|L Chain L, Crystal Structure Of H.Pylori Clpp S99a
 gi|185177797|pdb|2ZL3|M Chain M, Crystal Structure Of H.Pylori Clpp S99a
 gi|185177798|pdb|2ZL3|N Chain N, Crystal Structure Of H.Pylori Clpp S99a
 gi|185177799|pdb|2ZL4|A Chain A, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 gi|185177801|pdb|2ZL4|B Chain B, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 gi|185177803|pdb|2ZL4|C Chain C, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 gi|185177805|pdb|2ZL4|D Chain D, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 gi|185177807|pdb|2ZL4|E Chain E, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 gi|185177809|pdb|2ZL4|F Chain F, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 gi|185177811|pdb|2ZL4|G Chain G, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 gi|185177813|pdb|2ZL4|H Chain H, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 gi|185177815|pdb|2ZL4|I Chain I, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 gi|185177817|pdb|2ZL4|J Chain J, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 gi|185177819|pdb|2ZL4|K Chain K, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 gi|185177821|pdb|2ZL4|L Chain L, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 gi|185177823|pdb|2ZL4|M Chain M, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
 gi|185177825|pdb|2ZL4|N Chain N, Crystal Structure Of H.Pylori Clpp S99a In Complex With
           The Peptide Aaaa
          Length = 196

 Score =  276 bits (706), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 112/196 (57%), Positives = 155/196 (79%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
            +G +P V+E T+RGERSYDIYSRLLK+RIV ++G+I D +A+ I AQLLFLEAE+P+K+
Sbjct: 1   MMGYIPYVIENTDRGERSYDIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKD 60

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I LYINSPGGV+T+G++IYDTM FI+P +ST C+GQAA+MG+ LLS G KG RF+LP++R
Sbjct: 61  IGLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAAAMGAFLLSCGAKGKRFSLPHSR 120

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQP GG  GQASDIE  + +I+++K  +N I  +N G++ E++ K  DRD  MSA E
Sbjct: 121 IMIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKE 180

Query: 195 ACDWGVVDKVLMSRID 210
           A ++G++DKVL   + 
Sbjct: 181 AKEYGLIDKVLQKNVK 196


>gi|282856773|ref|ZP_06266034.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Pyramidobacter piscolens W5455]
 gi|282585396|gb|EFB90703.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Pyramidobacter piscolens W5455]
          Length = 192

 Score =  276 bits (706), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 112/190 (58%), Positives = 147/190 (77%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+EQT RGERSYDIYSRLLK+RIVF+  +I D +A  + AQLLFLE+E+P+++IS+Y
Sbjct: 3   IPFVIEQTGRGERSYDIYSRLLKDRIVFLGDEINDDVANAVVAQLLFLESESPERDISIY 62

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG V+AG+AIYDTMQF+K  +ST  +G AASM ++LLSAG  G R ALPN+RI++H
Sbjct: 63  INSPGGSVSAGLAIYDTMQFVKCDVSTIVVGMAASMAAVLLSAGSAGKRIALPNSRIMIH 122

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQASDIE  A++I+K K  LN I VK+ G++  +V+   DRD  M+A EA  +
Sbjct: 123 QPLGGAQGQASDIEIQAREIIKTKETLNNILVKHTGQSMRKVKGDTDRDFYMTAQEALAY 182

Query: 199 GVVDKVLMSR 208
           G+VDKV+  R
Sbjct: 183 GIVDKVIDKR 192


>gi|329770311|ref|ZP_08261696.1| ATP-dependent Clp protease proteolytic subunit [Gemella sanguinis
           M325]
 gi|328836764|gb|EGF86416.1| ATP-dependent Clp protease proteolytic subunit [Gemella sanguinis
           M325]
          Length = 215

 Score =  276 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 102/195 (52%), Positives = 146/195 (74%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT++GER+YDIYSRLLK+RI+ +  ++ D +A  I +QLLFLEA++ +K+I
Sbjct: 1   MNLIPTVIEQTSQGERAYDIYSRLLKDRIIILGSEVNDQVANSITSQLLFLEAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG VTAG AIYDTMQ IK  + T CMG AASMG+ LL+AG  G R+ALPNA +
Sbjct: 61  YFYINSPGGSVTAGFAIYDTMQHIKCDVVTICMGMAASMGAFLLAAGTIGKRYALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I++ + +LN+I     G+T + +E+  +RD+ +SA EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKHILRTREKLNKILADRTGQTIKAIERDTERDNYLSAEEA 180

Query: 196 CDWGVVDKVLMSRID 210
           C++G+VDKV+    +
Sbjct: 181 CEYGLVDKVMYPENN 195


>gi|291463558|pdb|3KTG|A Chain A, Structure Of Clpp From Bacillus Subtilis In Monoclinic
           Crystal Form
 gi|291463559|pdb|3KTG|B Chain B, Structure Of Clpp From Bacillus Subtilis In Monoclinic
           Crystal Form
 gi|291463560|pdb|3KTG|C Chain C, Structure Of Clpp From Bacillus Subtilis In Monoclinic
           Crystal Form
 gi|291463561|pdb|3KTG|D Chain D, Structure Of Clpp From Bacillus Subtilis In Monoclinic
           Crystal Form
 gi|291463562|pdb|3KTG|E Chain E, Structure Of Clpp From Bacillus Subtilis In Monoclinic
           Crystal Form
 gi|291463563|pdb|3KTG|F Chain F, Structure Of Clpp From Bacillus Subtilis In Monoclinic
           Crystal Form
 gi|291463564|pdb|3KTG|G Chain G, Structure Of Clpp From Bacillus Subtilis In Monoclinic
           Crystal Form
 gi|291463565|pdb|3KTH|A Chain A, Structure Of Clpp From Bacillus Subtilis In Orthorombic
           Crystal Form
 gi|291463566|pdb|3KTH|B Chain B, Structure Of Clpp From Bacillus Subtilis In Orthorombic
           Crystal Form
 gi|291463567|pdb|3KTH|C Chain C, Structure Of Clpp From Bacillus Subtilis In Orthorombic
           Crystal Form
 gi|291463568|pdb|3KTH|D Chain D, Structure Of Clpp From Bacillus Subtilis In Orthorombic
           Crystal Form
 gi|291463569|pdb|3KTH|E Chain E, Structure Of Clpp From Bacillus Subtilis In Orthorombic
           Crystal Form
 gi|291463570|pdb|3KTH|F Chain F, Structure Of Clpp From Bacillus Subtilis In Orthorombic
           Crystal Form
 gi|291463571|pdb|3KTH|G Chain G, Structure Of Clpp From Bacillus Subtilis In Orthorombic
           Crystal Form
          Length = 199

 Score =  276 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 110/191 (57%), Positives = 151/191 (79%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            L+P V+EQTNRGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL AE+P+KEIS
Sbjct: 1   NLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEIS 60

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG +TAGMAIYDTMQFIKP +ST C+G AASMG+ LL+AGEKG R+ALPN+ ++
Sbjct: 61  LYINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVM 120

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA++IE  A+ I+ ++ +LN++  +  G+  E +E+  DRD+  SA EA 
Sbjct: 121 IHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEAL 180

Query: 197 DWGVVDKVLMS 207
           ++G++DK+L  
Sbjct: 181 EYGLIDKILTH 191


>gi|83858431|ref|ZP_00951953.1| ATP-dependent Clp protease, proteolytic subunit [Oceanicaulis
           alexandrii HTCC2633]
 gi|83853254|gb|EAP91106.1| ATP-dependent Clp protease, proteolytic subunit [Oceanicaulis
           alexandrii HTCC2633]
          Length = 207

 Score =  276 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 141/204 (69%), Positives = 172/204 (84%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           ++ +DV + LVPMVVEQ+ RGER+YDIYSRLLKERIVFVTG IEDHMA+L+ AQLLFLE+
Sbjct: 2   REPQDVMMNLVPMVVEQSARGERAYDIYSRLLKERIVFVTGPIEDHMASLMVAQLLFLES 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP KEI++YINSPGG V+AG+AIYDTMQ+I  P++T C+G AASMGSLLL+AG+KGMRF
Sbjct: 62  ENPNKEIAMYINSPGGSVSAGLAIYDTMQYISCPVATACVGMAASMGSLLLTAGDKGMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           A PNARI+LHQPSGGF G  +DIERH +DI+KIKRR+NEIYVK+ G+  E+VEKTLDRD 
Sbjct: 122 ATPNARIMLHQPSGGFRGTTADIERHGEDILKIKRRMNEIYVKHTGQPLEKVEKTLDRDF 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIE 212
            M A EA ++G++D V   R   E
Sbjct: 182 YMDAMEAKEFGLIDHVYEKRGGAE 205


>gi|331003803|ref|ZP_08327295.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
           oral taxon 107 str. F0167]
 gi|330411995|gb|EGG91392.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
           oral taxon 107 str. F0167]
          Length = 193

 Score =  276 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 107/192 (55%), Positives = 149/192 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+E T+RGER++DIYSRLLK+RI+F+  ++ D  A+L+ AQ+LFLE+E+P K+I
Sbjct: 1   MSLVPTVIESTSRGERAFDIYSRLLKDRIIFLGEEVNDVTASLVVAQILFLESEDPTKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGG V AGMAIYDTMQ++K  +ST CMG AASMG+ LL+ G KG R+ALPNA I
Sbjct: 61  NLYINSPGGSVVAGMAIYDTMQYVKCDVSTICMGMAASMGAFLLAGGTKGKRYALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I   A+ I+K K ++N+I  +N  +  E +E+  +RD+ MSA EA
Sbjct: 121 MIHQPSGGAQGQATEIRIAAEQILKTKEKMNKILAENTNRPIEVIERDTERDNYMSAKEA 180

Query: 196 CDWGVVDKVLMS 207
            D+G++DKV+  
Sbjct: 181 LDYGIIDKVIEH 192


>gi|297616502|ref|YP_003701661.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297144339|gb|ADI01096.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 203

 Score =  276 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 111/188 (59%), Positives = 149/188 (79%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+VVEQT+RGER+YDIYSRLLK+RIVF+   I+D +A LI AQ LFLEAE+P K+I  
Sbjct: 7   LVPIVVEQTSRGERAYDIYSRLLKDRIVFLGSPIDDQVANLIIAQFLFLEAEDPDKDIHF 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG ++AGMAI+DTMQ+++P +ST C+G AASMG+ LL+AG KG RFALPN+ I++
Sbjct: 67  YINSPGGSISAGMAIFDTMQYLRPDVSTICVGMAASMGAFLLAAGAKGKRFALPNSEIMI 126

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE HA+ IV +K+RLN+I  +  G+  E +E+ ++RD  M+A EA  
Sbjct: 127 HQPIGGTQGQATDIEIHARRIVNLKKRLNQILAERTGQKLEVIERDVERDFFMTAEEAKA 186

Query: 198 WGVVDKVL 205
           +G++D + 
Sbjct: 187 YGIIDDIF 194


>gi|115374875|ref|ZP_01462148.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Stigmatella
           aurantiaca DW4/3-1]
 gi|115368093|gb|EAU67055.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Stigmatella
           aurantiaca DW4/3-1]
          Length = 204

 Score =  276 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 108/194 (55%), Positives = 156/194 (80%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            +P V+EQT+RGERSYDIYSRLLK+RIV +  +I+D ++  I +QLLFLE+E+P K+I+L
Sbjct: 2   PIPYVIEQTHRGERSYDIYSRLLKDRIVMLGTEIDDDVSNAIVSQLLFLESEDPDKDINL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+AIYDTMQ++K P+ST C+GQAASMG++LL AG KG R++LP++RI++
Sbjct: 62  YINSPGGSVTAGLAIYDTMQYVKCPVSTICIGQAASMGAVLLLAGAKGKRYSLPSSRIMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I++++ +LN++ VK+ G+  E VEK  DRD+ M A+E+  
Sbjct: 122 HQPLGGVRGQATDIEIQAKEILRMRAKLNDLIVKHTGQPLERVEKDTDRDYYMGATESKA 181

Query: 198 WGVVDKVLMSRIDI 211
           +G++D++   R  +
Sbjct: 182 YGIIDEIQNPRKPV 195


>gi|319408364|emb|CBI82017.1| ATP-dependent Clp protease, proteolytic subunit [Bartonella
           schoenbuchensis R1]
          Length = 210

 Score =  276 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 148/206 (71%), Positives = 178/206 (86%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           D     L LVPMVVEQTNRGER+YDI+SRLLKERI+F+ G +ED MA L+CAQLLFLEAE
Sbjct: 3   DPIKTALNLVPMVVEQTNRGERAYDIFSRLLKERIIFINGPVEDGMAMLVCAQLLFLEAE 62

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP+KEISLYINSPGGVVT+GMAIYDTMQFI+PP+ST CMGQAASMGSLLL+AG KG RF+
Sbjct: 63  NPKKEISLYINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGAKGHRFS 122

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPNARI++HQPSGGF GQ SDIERHAQDI+K+K+RLNEIYV++ G+ YE +EKTLDRDH 
Sbjct: 123 LPNARIMVHQPSGGFQGQVSDIERHAQDIIKMKQRLNEIYVQHTGQDYEIIEKTLDRDHF 182

Query: 190 MSASEACDWGVVDKVLMSRIDIEEKS 215
           M+A E+ ++G++D V+  R   E++ 
Sbjct: 183 MTAEESKNFGLIDDVIQYRTVTEKEE 208


>gi|164687878|ref|ZP_02211906.1| hypothetical protein CLOBAR_01523 [Clostridium bartlettii DSM
           16795]
 gi|164603153|gb|EDQ96618.1| hypothetical protein CLOBAR_01523 [Clostridium bartlettii DSM
           16795]
          Length = 217

 Score =  276 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 108/200 (54%), Positives = 147/200 (73%), Gaps = 3/200 (1%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + +VP VV+QT  GERSYDI+SRLL +RI+F+  ++ D  A+++ AQLLFLEAE+P K+I
Sbjct: 18  MSVVPYVVQQTGNGERSYDIFSRLLCDRIIFLGEEVTDASASVVIAQLLFLEAEDPDKDI 77

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG AIYDTMQ +K  +ST C+G AAS GS LL+ G KG RFALPN++I
Sbjct: 78  YLYINSPGGSVTAGFAIYDTMQHVKCDVSTICIGLAASFGSFLLAGGAKGKRFALPNSQI 137

Query: 136 LLHQP---SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           ++HQP     G  GQA+DI+  A++++K K RLN I  +N GK+ EE+ +  DRD+ MSA
Sbjct: 138 MIHQPLIGGNGIQGQATDIKIVAENLLKTKERLNRILAENTGKSIEEIYRDTDRDNFMSA 197

Query: 193 SEACDWGVVDKVLMSRIDIE 212
            EA D+G++D ++     I+
Sbjct: 198 QEALDYGLIDSIITRSDSIK 217


>gi|71276511|ref|ZP_00652786.1| Peptidase S14, ClpP [Xylella fastidiosa Dixon]
 gi|71900578|ref|ZP_00682705.1| Peptidase S14, ClpP [Xylella fastidiosa Ann-1]
 gi|170729732|ref|YP_001775165.1| ATP-dependent Clp protease proteolytic subunit [Xylella fastidiosa
           M12]
 gi|226706561|sp|B0U5N1|CLPP_XYLFM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|71162688|gb|EAO12415.1| Peptidase S14, ClpP [Xylella fastidiosa Dixon]
 gi|71729635|gb|EAO31739.1| Peptidase S14, ClpP [Xylella fastidiosa Ann-1]
 gi|167964525|gb|ACA11535.1| Endopeptidase Clp [Xylella fastidiosa M12]
          Length = 208

 Score =  276 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 122/201 (60%), Positives = 163/201 (81%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           D     L LVPMVVEQT+RGER+YDIYSRLLKER++F+ G I+D+MA LI AQLLFLEAE
Sbjct: 2   DDVTKALNLVPMVVEQTSRGERAYDIYSRLLKERLIFLVGPIDDYMANLIVAQLLFLEAE 61

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP+K+I++YINSPGGVVTAGMAIYDTMQ+IKP +ST C+GQAASMG+LLL++G  G R+A
Sbjct: 62  NPEKDINIYINSPGGVVTAGMAIYDTMQYIKPAVSTICVGQAASMGALLLASGASGKRYA 121

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPN+R+++HQP GGF GQA+D++ HA++I+ ++ RLNEI  K+ G++ E +    +RD+ 
Sbjct: 122 LPNSRVMIHQPLGGFQGQATDVDIHAREILALRARLNEILAKHTGQSLETIAHDTERDNF 181

Query: 190 MSASEACDWGVVDKVLMSRID 210
            SA +A  +G+VD+V   R +
Sbjct: 182 KSAVDAQAYGLVDQVFGQRQE 202


>gi|323139086|ref|ZP_08074144.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylocystis
           sp. ATCC 49242]
 gi|322395650|gb|EFX98193.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylocystis
           sp. ATCC 49242]
          Length = 210

 Score =  276 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 141/209 (67%), Positives = 179/209 (85%), Gaps = 1/209 (0%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           +D  +V+   L+P V+E T+RGER +DIYSRLL+ERI+FVTG IEDHMA++I AQLLFLE
Sbjct: 2   RDPIEVYSQYLIPQVIENTSRGERGFDIYSRLLRERIIFVTGPIEDHMASVIIAQLLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           +ENP+KEISLYINSPGGVVT+G+AIYDTMQFIKP +ST C+GQAASMGSLLL AG  G+R
Sbjct: 62  SENPKKEISLYINSPGGVVTSGLAIYDTMQFIKPKVSTLCVGQAASMGSLLLCAGADGLR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           +ALPNAR++LHQPSGGF GQASDI+RHA+DI+K+K+RLN+IYV++ GK Y+ +E+TLDRD
Sbjct: 122 YALPNARVMLHQPSGGFQGQASDIQRHAEDILKVKKRLNDIYVRHTGKDYDTIERTLDRD 181

Query: 188 HIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           H MSA EA  +G++D V   R + E ++K
Sbjct: 182 HFMSAEEAKSFGIIDSVQEKRAEDETEAK 210


>gi|33862212|ref|NP_893773.1| Clp protease proteolytic subunit [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|67460514|sp|Q7UZK7|CLPP3_PROMP RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
           AltName: Full=Endopeptidase Clp 3
 gi|33634430|emb|CAE20115.1| Clp protease proteolytic subunit [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 215

 Score =  276 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 103/205 (50%), Positives = 144/205 (70%)

Query: 3   FEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQ 62
            +        D     VP VVEQ+ RGER++DIYSRLL+ERI+F+   I D ++  + AQ
Sbjct: 9   IQSSINSRDIDKSRSAVPTVVEQSGRGERAFDIYSRLLRERIIFLGTGINDQVSDSLVAQ 68

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           LLFLEAE+P K+I +YINSPGG VTAG+AIYDTMQ I P + T C G AASMG+ LLS G
Sbjct: 69  LLFLEAEDPHKDIQIYINSPGGSVTAGLAIYDTMQQISPDVVTICFGVAASMGAFLLSGG 128

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
            KG R ALPN+RI++HQP GG  GQA +IE  A++I+ +K+ LN +  K+  ++ E++ +
Sbjct: 129 AKGKRLALPNSRIMIHQPLGGAQGQAVEIEIQAKEILFLKKTLNSLLAKHTNQSLEKINE 188

Query: 183 TLDRDHIMSASEACDWGVVDKVLMS 207
             +RD+ +S  EA ++G++DKV+ +
Sbjct: 189 DTERDYFLSPEEAVEYGLIDKVIKN 213


>gi|149181848|ref|ZP_01860338.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sp. SG-1]
 gi|148850487|gb|EDL64647.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sp. SG-1]
          Length = 206

 Score =  275 bits (705), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 107/199 (53%), Positives = 151/199 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+R++ +   I+D++A  I AQLLFLE+ENP+K+I
Sbjct: 8   MNLIPTVIEQTNRGERAYDIYSRLLKDRVIMLGSGIDDNVANSIVAQLLFLESENPEKDI 67

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGG +TAGMAIYDT+Q+IKP + T C+G AASMG+ LL+AG KG R ALPNA +
Sbjct: 68  SIYINSPGGSITAGMAIYDTIQYIKPDVQTICIGMAASMGAFLLAAGAKGKRLALPNAEV 127

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN+I     G+  E + K  DRD+ M+A  A
Sbjct: 128 MIHQPLGGAQGQATEIEIAAKRILFLREKLNQILSDRTGQPLEVISKDTDRDNFMTAERA 187

Query: 196 CDWGVVDKVLMSRIDIEEK 214
            ++G++D+++ S    E K
Sbjct: 188 LEYGLIDRIITSNEMNENK 206


>gi|326203841|ref|ZP_08193703.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           papyrosolvens DSM 2782]
 gi|325985939|gb|EGD46773.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           papyrosolvens DSM 2782]
          Length = 194

 Score =  275 bits (705), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 104/194 (53%), Positives = 151/194 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQTNRGERSYDI+SRLL +RI+ ++ ++ D  A+L+ AQ+L+LEA++P K+I
Sbjct: 1   MSLVPMVVEQTNRGERSYDIFSRLLNDRIIVLSDEVNDATASLVVAQMLYLEAQDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG V +G AIYDTMQ++K  +ST CMG AASMG+ LL+AGEKG RFALPN+ I
Sbjct: 61  QFYINSPGGSVASGFAIYDTMQYVKCDVSTICMGMAASMGAFLLAAGEKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+ HA++I++ + +LN+I  +  G+  +++E+  +RD  MSA +A
Sbjct: 121 MIHQPLGGAKGQATDIKIHAENILRTRDKLNKILSERTGQPLDKIERDTERDFFMSADDA 180

Query: 196 CDWGVVDKVLMSRI 209
             +G++D +++ R 
Sbjct: 181 KAYGIIDDIMVRRK 194


>gi|156362486|ref|XP_001625808.1| predicted protein [Nematostella vectensis]
 gi|156212658|gb|EDO33708.1| predicted protein [Nematostella vectensis]
          Length = 228

 Score =  275 bits (705), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 117/199 (58%), Positives = 155/199 (77%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMV+E T RGER+YDI+SRLLKERIV V G + D  ++L+ AQLLFL++E+ +  I +
Sbjct: 27  LVPMVIESTGRGERAYDIFSRLLKERIVCVMGPVTDETSSLVIAQLLFLQSESSKLPIHM 86

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VT+G+ IYDTMQ+I+PPIST+C+GQA SMGSLLL+AG  G+R ALP++RI++
Sbjct: 87  YINSPGGTVTSGLGIYDTMQYIQPPISTWCVGQACSMGSLLLAAGSPGLRHALPHSRIMV 146

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG SGQA+DI   A++I+K+KR LN IYVK+ GK  E +E+ L+RD  MS  EA +
Sbjct: 147 HQPHGGASGQATDIAIQAEEILKLKRVLNGIYVKHTGKDMETIEQALERDKFMSPEEAKE 206

Query: 198 WGVVDKVLMSRIDIEEKSK 216
           +G++D+VL      EE  K
Sbjct: 207 FGLIDRVLAHPPTNEELKK 225


>gi|260432980|ref|ZP_05786951.1| Clp protease [Silicibacter lacuscaerulensis ITI-1157]
 gi|260416808|gb|EEX10067.1| Clp protease [Silicibacter lacuscaerulensis ITI-1157]
          Length = 210

 Score =  275 bits (705), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 132/205 (64%), Positives = 165/205 (80%), Gaps = 1/205 (0%)

Query: 10  DSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           D  D ++  LVPMVVEQT+RGER+YDI+SRLLKERIVF+ G I D M+ LI AQLL LEA
Sbjct: 3   DPVDTYMNTLVPMVVEQTSRGERAYDIFSRLLKERIVFINGPIHDGMSHLIVAQLLHLEA 62

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEIS+YINSPGGVVT+G+AIYDTMQ+IKP  ST  +GQAASMGS+LL+ GEKGMRF
Sbjct: 63  ENPKKEISIYINSPGGVVTSGLAIYDTMQYIKPKCSTLVIGQAASMGSVLLAGGEKGMRF 122

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           ALPN+RI++HQPSGG+ GQASDI  HA +  K+K RL +IY K+ G++ + +EK LDRD+
Sbjct: 123 ALPNSRIMVHQPSGGYQGQASDIMIHAAETQKLKDRLYDIYAKHTGQSKKTIEKALDRDN 182

Query: 189 IMSASEACDWGVVDKVLMSRIDIEE 213
            MS  EA +WG +D+++ SR   E 
Sbjct: 183 FMSPEEAKEWGHIDEIVESRTKAEP 207


>gi|46579746|ref|YP_010554.1| ATP-dependent Clp protease proteolytic subunit [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120602778|ref|YP_967178.1| ATP-dependent Clp protease proteolytic subunit [Desulfovibrio
           vulgaris DP4]
 gi|60389677|sp|Q72CE8|CLPP_DESVH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166201819|sp|A1VE85|CLPP_DESVV RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|46449161|gb|AAS95813.1| ATP-dependent Clp protease, proteolytic subunit [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120563007|gb|ABM28751.1| ATP-dependent Clp protease proteolytic subunit ClpP [Desulfovibrio
           vulgaris DP4]
 gi|311233536|gb|ADP86390.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
           vulgaris RCH1]
          Length = 201

 Score =  275 bits (705), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 115/196 (58%), Positives = 156/196 (79%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            VP+V+E T R ER+YDIYSRLLK+RIV +   I+D +A+LICAQLLFLE+ENP+KEI +
Sbjct: 2   PVPIVIESTGRAERAYDIYSRLLKDRIVLLGTPIDDQVASLICAQLLFLESENPEKEIHM 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGMAIYDTMQ+I  P+ST CMGQAASMG+LLL+AG  G+RF+LP++RI++
Sbjct: 62  YINSPGGSVTAGMAIYDTMQYINSPVSTLCMGQAASMGALLLAAGAPGLRFSLPHSRIMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGGF GQA+DI+  A++++++K+ LN I  ++ GK  E+V    +RD+ M   EA  
Sbjct: 122 HQPSGGFQGQATDIDIQAREVLRLKQSLNAIMSQHTGKPLEQVALDTERDYFMGPEEAQA 181

Query: 198 WGVVDKVLMSRIDIEE 213
           +G++D+VL SR +  +
Sbjct: 182 YGLIDRVLTSRSEATD 197


>gi|110680063|ref|YP_683070.1| ATP-dependent Clp protease proteolytic subunit [Roseobacter
           denitrificans OCh 114]
 gi|116243162|sp|Q165F9|CLPP_ROSDO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|109456179|gb|ABG32384.1| Clp protease, putative [Roseobacter denitrificans OCh 114]
          Length = 208

 Score =  275 bits (705), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 126/207 (60%), Positives = 171/207 (82%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           KD  + ++ LVPMVVEQT+RGER+YDI+SRLLKERI+F+ G + D M++LI AQLL LEA
Sbjct: 2   KDPIETYMNLVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMSSLIVAQLLHLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP KEIS+YINSPGGVVT+G++IYDTMQ+IKP +ST  +GQAASMGSLLL+AGE GMRF
Sbjct: 62  ENPAKEISMYINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLTAGEAGMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPN+R+++HQPSGG+ GQA+DI  HA +  K+K RLNEIYVK+ G+T ++V   L+RD+
Sbjct: 122 SLPNSRVMVHQPSGGYQGQATDIMIHAAETQKLKDRLNEIYVKHTGQTMKKVVDALERDN 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIEEKS 215
            MS  EA ++G++D+++ +R   + ++
Sbjct: 182 FMSPEEAKEFGLIDEIVENRSKDDAET 208


>gi|148255923|ref|YP_001240508.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bradyrhizobium
           sp. BTAi1]
 gi|166201801|sp|A5EKA8|CLPP_BRASB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|146408096|gb|ABQ36602.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bradyrhizobium
           sp. BTAi1]
          Length = 210

 Score =  275 bits (705), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 135/204 (66%), Positives = 173/204 (84%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  + ++ LVPMVVEQTNRGER+YDI+SRLLKERI+FVTG +ED MATLI AQLLFLEA
Sbjct: 2   RDPVETYMNLVPMVVEQTNRGERAYDIFSRLLKERIIFVTGPVEDGMATLIVAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEI++YINSPGGVVT+G+AIYDTMQFI+P +ST C GQAASMGSLLL AG K MRF
Sbjct: 62  ENPKKEIAMYINSPGGVVTSGLAIYDTMQFIRPAVSTLCTGQAASMGSLLLCAGHKDMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPN+RI++HQPSGGF GQA+DI  HAQ+I+ +K+RLNEIYVK+ G++Y+ +E  L+RD 
Sbjct: 122 SLPNSRIMVHQPSGGFQGQATDIMLHAQEILSLKKRLNEIYVKHTGQSYKAIEDALERDK 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIE 212
            ++A  A ++G++DKV+  R +  
Sbjct: 182 FLTAEAAAEFGLIDKVIDKRPEDP 205


>gi|317130215|ref|YP_004096497.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bacillus
           cellulosilyticus DSM 2522]
 gi|315475163|gb|ADU31766.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cellulosilyticus DSM 2522]
          Length = 195

 Score =  275 bits (705), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 108/195 (55%), Positives = 153/195 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQTNRGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL A++P+K+I
Sbjct: 1   MNLVPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAADDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG +TAGMAI+DTMQFI+P + T C+G AASMG+ LL+AGE G RFALPN+ +
Sbjct: 61  SLYINSPGGSITAGMAIFDTMQFIQPKVQTICIGMAASMGAFLLAAGEPGKRFALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DIE HA+ IV+++ +LNEI  +  G+  E + +  DRD+ M++ EA
Sbjct: 121 MIHQPLGGAQGQAADIEIHAKRIVQMREKLNEILAERTGQPIEVIARDTDRDNFMTSFEA 180

Query: 196 CDWGVVDKVLMSRID 210
             +G++D+V+  + +
Sbjct: 181 KKYGLIDEVMEKKPE 195


>gi|160902469|ref|YP_001568050.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Petrotoga
           mobilis SJ95]
 gi|160360113|gb|ABX31727.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Petrotoga
           mobilis SJ95]
          Length = 205

 Score =  275 bits (705), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 106/199 (53%), Positives = 152/199 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            +P+V+E   R ER+YDIYSRLLK+RIVF+   I D +A +I AQLLFLE+++P K+I L
Sbjct: 4   PMPVVIETEGRYERAYDIYSRLLKDRIVFLGTPINDDVANVIIAQLLFLESQDPDKDIFL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VT+G+ IYDTMQ++KP IST C+GQAASMG++LL+AG KG R++LP +RI++
Sbjct: 64  YINSPGGSVTSGLGIYDTMQYVKPDISTICIGQAASMGAVLLAAGAKGKRYSLPYSRIMI 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  G A DI+ HA++I+++K  LN I  K+ G++ E++EK  +RD  M+A EA +
Sbjct: 124 HQPWGGAEGTAIDIQIHAREILRLKDDLNNILSKHTGQSLEKIEKDTERDFFMNAQEALN 183

Query: 198 WGVVDKVLMSRIDIEEKSK 216
           +G++DKV+ ++ +   K  
Sbjct: 184 YGLIDKVITTKSEATAKEN 202


>gi|310820094|ref|YP_003952452.1| ATP-dependent CLP protease proteolytic subunit 1 [Stigmatella
           aurantiaca DW4/3-1]
 gi|309393166|gb|ADO70625.1| ATP-dependent Clp protease proteolytic subunit 1 [Stigmatella
           aurantiaca DW4/3-1]
          Length = 207

 Score =  275 bits (705), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 108/194 (55%), Positives = 156/194 (80%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            +P V+EQT+RGERSYDIYSRLLK+RIV +  +I+D ++  I +QLLFLE+E+P K+I+L
Sbjct: 5   PIPYVIEQTHRGERSYDIYSRLLKDRIVMLGTEIDDDVSNAIVSQLLFLESEDPDKDINL 64

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+AIYDTMQ++K P+ST C+GQAASMG++LL AG KG R++LP++RI++
Sbjct: 65  YINSPGGSVTAGLAIYDTMQYVKCPVSTICIGQAASMGAVLLLAGAKGKRYSLPSSRIMI 124

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I++++ +LN++ VK+ G+  E VEK  DRD+ M A+E+  
Sbjct: 125 HQPLGGVRGQATDIEIQAKEILRMRAKLNDLIVKHTGQPLERVEKDTDRDYYMGATESKA 184

Query: 198 WGVVDKVLMSRIDI 211
           +G++D++   R  +
Sbjct: 185 YGIIDEIQNPRKPV 198


>gi|229823184|ref|ZP_04449253.1| hypothetical protein GCWU000282_00482 [Catonella morbi ATCC 51271]
 gi|229787350|gb|EEP23464.1| hypothetical protein GCWU000282_00482 [Catonella morbi ATCC 51271]
          Length = 198

 Score =  275 bits (705), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 102/198 (51%), Positives = 150/198 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQ++RGER+YDIYSRLLK+RIV ++G I+D +A  + AQLLFL+A++P K+I
Sbjct: 1   MNLIPTVIEQSSRGERAYDIYSRLLKDRIVMLSGPIDDAVANSVIAQLLFLDAQDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG V+AG+AI+DTM FI   + T  +G AASMG+ LL+AGEKG R+ALPNA +
Sbjct: 61  YLYINSPGGSVSAGLAIFDTMNFINADVQTIVIGMAASMGAFLLAAGEKGKRYALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K +  LN+I  +  G+T + + +  DRD+ MSA EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKHILKTRDTLNKILAERTGQTLKVIARDTDRDNYMSAEEA 180

Query: 196 CDWGVVDKVLMSRIDIEE 213
             +G+VD ++ +  ++++
Sbjct: 181 VKYGLVDAIMTNSKNLKK 198


>gi|152978444|ref|YP_001344073.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           succinogenes 130Z]
 gi|171704240|sp|A6VME1|CLPP_ACTSZ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|150840167|gb|ABR74138.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Actinobacillus succinogenes 130Z]
          Length = 194

 Score =  275 bits (705), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 125/193 (64%), Positives = 159/193 (82%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMV+EQT+RGERSYDIYSRLLKER++F++G++ED+MA LI AQLLFLE+E+P K+I
Sbjct: 1   MALVPMVIEQTSRGERSYDIYSRLLKERVIFLSGEVEDNMANLIVAQLLFLESEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGG VTAGMAIYDTMQFIKP + T C+GQA SMG+ LL+ G  G R ALPNAR+
Sbjct: 61  NLYINSPGGSVTAGMAIYDTMQFIKPDVRTLCIGQACSMGAFLLAGGAAGKRAALPNARV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQASDI+ HAQ+I+KIK  LNE    + G+  E++EK  DRD+ MSA EA
Sbjct: 121 MIHQPLGGFRGQASDIQIHAQEILKIKHTLNERLAFHSGQPLEQIEKDTDRDNFMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++D VL+ R
Sbjct: 181 QNYGLIDSVLVKR 193


>gi|313683647|ref|YP_004061385.1| ATP-dependent clp protease proteolytic subunit clpp [Sulfuricurvum
           kujiense DSM 16994]
 gi|313156507|gb|ADR35185.1| ATP-dependent Clp protease proteolytic subunit ClpP [Sulfuricurvum
           kujiense DSM 16994]
          Length = 198

 Score =  275 bits (705), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 113/198 (57%), Positives = 160/198 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P V+E+T RGERSYDIYSRLLK+RI+ ++G++ D +A+ I AQLLFLEAE+P K+I
Sbjct: 1   MSYIPYVIEKTGRGERSYDIYSRLLKDRIIMLSGEVNDPVASSIVAQLLFLEAEDPAKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGGV+T+GMAI+DTM +I+P + T C+GQAASMG+ LLS+G KG R+ALP+ARI
Sbjct: 61  YFYINSPGGVITSGMAIFDTMNYIRPDVCTICIGQAASMGAFLLSSGTKGKRYALPHARI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DIE  A++I+++K  LNEI  KNCG++ +++EK  DRD+ MSA+EA
Sbjct: 121 MIHQPLGGAQGQATDIEIQAKEILRMKAELNEILAKNCGQSVKKLEKDTDRDNFMSAAEA 180

Query: 196 CDWGVVDKVLMSRIDIEE 213
             +G++D+VL+ +   E+
Sbjct: 181 VTYGIIDEVLVQKEKEEK 198


>gi|291542673|emb|CBL15783.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ruminococcus
           bromii L2-63]
          Length = 193

 Score =  275 bits (705), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 103/193 (53%), Positives = 148/193 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQ++RGERS+DIYSRLL++RIV +  ++    A+++ AQLL+LE+++P K+I
Sbjct: 1   MALVPYVIEQSSRGERSFDIYSRLLEDRIVMLNEEVNSASASVVVAQLLYLESKDPTKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG VT G AI+DTM +IK  +ST CMG AASMG+ LL+AG KG R ALPN+ I
Sbjct: 61  SLYINSPGGSVTDGFAIFDTMNYIKCDVSTICMGMAASMGAFLLAAGAKGKRLALPNSDI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+D+E H + I+ +K+RLN+I   N G+  + + K  +RD+ M+A +A
Sbjct: 121 MIHQPSGGAQGQATDMEIHTRHILDMKKRLNQILADNTGQPIDVIAKDTNRDNFMTAQQA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++DKV+  R
Sbjct: 181 LEYGLIDKVIEKR 193


>gi|16332037|ref|NP_442765.1| ATP-dependent protease ClpP [Synechocystis sp. PCC 6803]
 gi|1705930|sp|P54416|CLPP1_SYNY3 RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|1001349|dbj|BAA10836.1| ATP-dependent protease; ClpP [Synechocystis sp. PCC 6803]
          Length = 198

 Score =  275 bits (705), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 101/196 (51%), Positives = 145/196 (73%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+E + RG+R++DIYSRLL+ERIVF+  ++ D  A L+ AQLLFLEAE+P+K+I L
Sbjct: 1   MIPTVIETSGRGDRAFDIYSRLLRERIVFLGQEVRDENANLVVAQLLFLEAEDPEKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG+ I+DTM  I+P + T C+G AASMG+ LLSAG KG R +LPN+RI++
Sbjct: 61  YINSPGGSVSAGLGIFDTMNQIRPDVCTICIGLAASMGAFLLSAGAKGKRMSLPNSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+ +K  LN+    + GK+ EE+    +RD  MSA E+ +
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYLKALLNQHLANHTGKSLEEITADTERDFFMSAEESKE 180

Query: 198 WGVVDKVLMSRIDIEE 213
           +G++D+V+  R    +
Sbjct: 181 YGLIDQVINRRPSASD 196


>gi|115374393|ref|ZP_01461676.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Stigmatella
           aurantiaca DW4/3-1]
 gi|310824399|ref|YP_003956757.1| ATP-dependent CLP protease proteolytic subunit 2 [Stigmatella
           aurantiaca DW4/3-1]
 gi|115368595|gb|EAU67547.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Stigmatella
           aurantiaca DW4/3-1]
 gi|309397471|gb|ADO74930.1| ATP-dependent Clp protease proteolytic subunit 2 [Stigmatella
           aurantiaca DW4/3-1]
          Length = 200

 Score =  275 bits (705), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 107/189 (56%), Positives = 152/189 (80%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+E ++RGER+YD+YSRLLK+RI+ +   I D +A ++ AQ+LFLE+E+P+K I++Y
Sbjct: 3   IPFVIETSHRGERAYDLYSRLLKDRIIMLGVPINDEVANVVVAQMLFLESEDPEKGINIY 62

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDTMQ++K P+ST C+GQAASMG+LLL AG KG R+ALPNARI++H
Sbjct: 63  INSPGGSVTAGLAIYDTMQYVKCPVSTICVGQAASMGALLLLAGSKGKRYALPNARIMIH 122

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA+DI+  A++I+++K  LN I VK+ G T E +EK  +RD+ MSA +A  +
Sbjct: 123 QPLGGAQGQATDIDIQAKEILRLKAYLNGIIVKHTGHTIERIEKDTERDYFMSADDARQY 182

Query: 199 GVVDKVLMS 207
           G++D+V++ 
Sbjct: 183 GIIDEVVVK 191


>gi|52425902|ref|YP_089039.1| ATP-dependent Clp protease proteolytic subunit [Mannheimia
           succiniciproducens MBEL55E]
 gi|60389529|sp|Q65RF6|CLPP_MANSM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|52307954|gb|AAU38454.1| ClpP protein [Mannheimia succiniciproducens MBEL55E]
          Length = 193

 Score =  275 bits (705), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 123/193 (63%), Positives = 161/193 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+PMVVEQT+RGERSYDIYSRLLKER++F++G++ED+MA LI AQLLFLE+ENP+K+I
Sbjct: 1   MALIPMVVEQTSRGERSYDIYSRLLKERVIFLSGEVEDNMANLIVAQLLFLESENPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGG VTAGMAIYDTMQFIKP + T C+GQA SMG+ LL+ G  G R ALP+AR+
Sbjct: 61  NLYINSPGGSVTAGMAIYDTMQFIKPDVRTLCVGQACSMGAFLLAGGAAGKRAALPHARV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQASDI+ HAQ+I+KIK+ LNE    + G+ +E +E+  DRD+ MSA +A
Sbjct: 121 MIHQPLGGFRGQASDIQIHAQEILKIKQTLNERLAFHTGQPFEVIERDTDRDNFMSAEDA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++D VL+ R
Sbjct: 181 KNYGLIDSVLVKR 193


>gi|303328063|ref|ZP_07358502.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
           sp. 3_1_syn3]
 gi|302861889|gb|EFL84824.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
           sp. 3_1_syn3]
          Length = 202

 Score =  275 bits (704), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 118/202 (58%), Positives = 167/202 (82%), Gaps = 1/202 (0%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMV+E T R ER+YDIYSRLLK+RIV +  ++ D +A+LICAQLLFLE+++P+KEI
Sbjct: 1   MSLVPMVIETTGRSERAYDIYSRLLKDRIVLLGSEVNDAVASLICAQLLFLESQDPEKEI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGG VTAG+AIYDTM++I  P++T CMG+AASMG+ LL+AGE GMRFALPN++I
Sbjct: 61  NLYINSPGGSVTAGLAIYDTMRYITSPVTTVCMGRAASMGAFLLAAGEPGMRFALPNSQI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGGF GQA+DIE HA++++++K RLN +  +N  + YE+V K  +RD+ ++  EA
Sbjct: 121 MIHQPSGGFQGQATDIEIHAREVLRLKERLNRMLAENTKRPYEDVVKATERDNFLTPEEA 180

Query: 196 CDWGVVDKVLMSRIDI-EEKSK 216
            + G++D+VL SR ++ +EKS+
Sbjct: 181 KELGIIDRVLASRREMAQEKSE 202


>gi|72383092|ref|YP_292447.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Prochlorococcus marinus str. NATL2A]
 gi|115311351|sp|Q46ID4|CLPP3_PROMT RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
           AltName: Full=Endopeptidase Clp 3
 gi|72002942|gb|AAZ58744.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Prochlorococcus marinus str. NATL2A]
          Length = 194

 Score =  275 bits (704), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 96/190 (50%), Positives = 143/190 (75%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+EQ+ +G+R++DIYSRLL+ERI+F+   + D +A  + AQ+LFLEA++P+K+I L
Sbjct: 1   MLPTVIEQSGQGDRAFDIYSRLLRERIIFLGTDVNDQVADALVAQMLFLEADDPEKDIQL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG VTAG+AIYDTMQ + P + T C G AASMG+ LLS G KG R ALPN+RI++
Sbjct: 61  YVNSPGGSVTAGLAIYDTMQQVSPDVITICYGLAASMGAFLLSGGTKGKRLALPNSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA +IE  A++I+ +K  LN +  ++ G+  +++ +  DRDH +S  EA +
Sbjct: 121 HQPLGGAQGQAVEIEIQAKEILYLKETLNSLLAEHTGQNIQKISEDTDRDHFLSPQEAVE 180

Query: 198 WGVVDKVLMS 207
           +G++DKV+ +
Sbjct: 181 YGLIDKVVSN 190


>gi|291518668|emb|CBK73889.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Butyrivibrio
           fibrisolvens 16/4]
          Length = 194

 Score =  275 bits (704), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 108/193 (55%), Positives = 148/193 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P V+EQ +RGERSYDIYSRLLK+RIVF+  ++ +  A+L  AQLLFLE+E+P K+I
Sbjct: 1   MATIPYVIEQNSRGERSYDIYSRLLKDRIVFLGEEVNETTASLTVAQLLFLESEDPSKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMAIYDTMQ+IK  +ST C+G AASMG+ LL+ G+KG RFALPNA +
Sbjct: 61  HLYINSPGGSVTAGMAIYDTMQYIKCDVSTICIGMAASMGAFLLAGGQKGKRFALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A++I+K + +LN +   N GK YE+V    +RDH + A EA
Sbjct: 121 MIHQPLGGAKGQATEIEIAAKNILKTREKLNRMLAANTGKDYEQVCLDTERDHWLDAQEA 180

Query: 196 CDWGVVDKVLMSR 208
            D+G++D+++  +
Sbjct: 181 LDYGLIDEIITKK 193


>gi|260654935|ref|ZP_05860423.1| Clp protease [Jonquetella anthropi E3_33 E1]
 gi|260630250|gb|EEX48444.1| Clp protease [Jonquetella anthropi E3_33 E1]
          Length = 195

 Score =  275 bits (704), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 105/191 (54%), Positives = 145/191 (75%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            +P V+EQT RGERSYDIYSRLLK+RI+F+  +I   +A  I AQ+LFLE++ P ++I L
Sbjct: 5   PIPYVIEQTGRGERSYDIYSRLLKDRIIFLGSEINSLVANSIVAQILFLESDQPDRDICL 64

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VT+G+AIYDTM+++K  IST  +G AASM S+LL+AG  G R ALPN+++++
Sbjct: 65  YINSPGGEVTSGLAIYDTMRYVKCDISTIVVGMAASMASILLAAGTPGKRIALPNSQVMI 124

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASD+E HA++I+K ++RLNEI   + G+    +E   DRDH +SA+EA  
Sbjct: 125 HQPMGGAYGQASDVEIHAREILKTRQRLNEILALHTGQPLSRIEVDTDRDHFLSAAEAQS 184

Query: 198 WGVVDKVLMSR 208
           +G+VD+V+  R
Sbjct: 185 YGLVDRVIEKR 195


>gi|291520781|emb|CBK79074.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Coprococcus
           catus GD/7]
          Length = 194

 Score =  275 bits (704), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 105/194 (54%), Positives = 143/194 (73%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQ++RGER++DIYSRLLK+RI+F+  ++ D  A LI +QLLFLE+E+P K+I
Sbjct: 1   MSLVPTVIEQSSRGERAFDIYSRLLKDRIIFLGEEVTDVSANLIVSQLLFLESEDPGKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG V+AGMAIYDTMQFIK  +ST CMG AASMG+ LL+ G  G R ALP++ I
Sbjct: 61  QMYINSPGGSVSAGMAIYDTMQFIKCDVSTICMGMAASMGAFLLAGGTPGKRLALPHSTI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++I+  A  I   KR LNE+   N  +  E++    +RD+ MSA EA
Sbjct: 121 MIHQPSGGAQGQATEIQIVADRIQYTKRMLNELLAANTHQPLEKIAADTERDYYMSAEEA 180

Query: 196 CDWGVVDKVLMSRI 209
            ++G++D V+  R 
Sbjct: 181 KNYGLIDAVVTKRA 194


>gi|126659496|ref|ZP_01730629.1| ATP-dependent Clp protease proteolytic subunit [Cyanothece sp.
           CCY0110]
 gi|126619230|gb|EAZ89966.1| ATP-dependent Clp protease proteolytic subunit [Cyanothece sp.
           CCY0110]
          Length = 201

 Score =  275 bits (704), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 107/193 (55%), Positives = 148/193 (76%), Gaps = 1/193 (0%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MVVEQ+  GER++DIYSRLL+ERIVF+   ++D +A  I AQLLFL+AE+P+K+I +YIN
Sbjct: 1   MVVEQSGVGERAFDIYSRLLRERIVFLGTPVDDQVADSIVAQLLFLDAEDPEKDIQIYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGG V AG+AIYDTMQ I+P + T C G AASMG+ LLS G KG R ALP++RI++HQP
Sbjct: 61  SPGGSVYAGLAIYDTMQQIRPDVVTICFGLAASMGAFLLSGGTKGKRMALPSSRIMIHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            GG  GQA +IE  A++I+ IK+RLN++  ++ G+ Y+++    +RD  MSA EA D+G+
Sbjct: 121 LGGAQGQAVEIEIQAKEILYIKKRLNDMLAEHTGQPYDKIATDTERDFFMSAQEAVDYGL 180

Query: 201 VDKVLMSRIDIEE 213
           +DKV+ SR D+ +
Sbjct: 181 IDKVI-SRPDLSD 192


>gi|118579613|ref|YP_900863.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pelobacter
           propionicus DSM 2379]
 gi|166201831|sp|A1AN85|CLPP_PELPD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|118502323|gb|ABK98805.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pelobacter
           propionicus DSM 2379]
          Length = 199

 Score =  275 bits (704), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 117/192 (60%), Positives = 155/192 (80%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +PMVVEQ+ RGER+YDIYSRLLKERI+F+ G I+D +A LI AQLLFLEAE+P K+I LY
Sbjct: 3   IPMVVEQSGRGERAYDIYSRLLKERIIFLGGGIDDQVANLIIAQLLFLEAEDPDKDIHLY 62

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGVVT+GMAIYDTM++IK P+ST C+GQAASMG++LL+AGEKG RF+L ++RI++H
Sbjct: 63  INSPGGVVTSGMAIYDTMRYIKAPVSTICVGQAASMGAVLLAAGEKGKRFSLNHSRIMIH 122

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GGF GQA+DI  HA++I+++K  LN I     G++ E +E   DRD+ MSA+EA ++
Sbjct: 123 QPLGGFQGQATDISIHAKEILRMKEELNSILADLTGQSKERIEADTDRDYFMSATEAEEY 182

Query: 199 GVVDKVLMSRID 210
           G++D     + D
Sbjct: 183 GLIDATFTRKPD 194


>gi|311031871|ref|ZP_07709961.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sp. m3-13]
          Length = 195

 Score =  275 bits (704), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 107/192 (55%), Positives = 148/192 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT+RGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL AE+P K+I
Sbjct: 1   MNLIPTVIEQTSRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG +TAGMAIYDTM FIKP +ST C+G AASMG+ LL+AGEKG RFALPN+ +
Sbjct: 61  SLYINSPGGSITAGMAIYDTMNFIKPNVSTICVGMAASMGAFLLAAGEKGKRFALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN I  +  G+  E + +  DRD+ M+A  A
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILFLREKLNTILSEQTGQPIEVISRDTDRDNFMTAERA 180

Query: 196 CDWGVVDKVLMS 207
            ++G++DKV+  
Sbjct: 181 LEYGLIDKVMNK 192


>gi|47216266|emb|CAG05962.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 249

 Score =  275 bits (704), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 118/192 (61%), Positives = 156/192 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
             L+P+VVEQT RGER+YDIYSRLL+ERI+ V G I+D +A+LI AQLLFL++E+  K I
Sbjct: 28  SPLIPIVVEQTGRGERAYDIYSRLLRERIICVMGPIDDSVASLIIAQLLFLQSESNNKPI 87

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG+AIYDTMQ+I  PIST+C+GQAASMGSLLL+AG  GMR +LPNAR+
Sbjct: 88  HMYINSPGGVVTAGLAIYDTMQYILNPISTWCVGQAASMGSLLLAAGTAGMRHSLPNARV 147

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+DI   A++I+K+KR++N IY K+ G+  E +E  ++RD  MS  EA
Sbjct: 148 MIHQPSGGARGQATDIAIQAEEILKLKRQINTIYAKHTGQPLETIESIMERDRYMSPMEA 207

Query: 196 CDWGVVDKVLMS 207
            D+G++D+VL+ 
Sbjct: 208 QDFGLIDRVLVH 219


>gi|87124411|ref|ZP_01080260.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           RS9917]
 gi|86167983|gb|EAQ69241.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           RS9917]
          Length = 196

 Score =  275 bits (704), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 97/192 (50%), Positives = 134/192 (69%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+E++ RGER++DIYSRLL+ERIVF+   +    A  I AQLLFLEAE+P K+I L
Sbjct: 1   MIPIVIEESGRGERAFDIYSRLLRERIVFLGEPVTSDSANRIVAQLLFLEAEDPDKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I+DTMQ IKP + T C+G AASMG+ LL AG KG R +L ++RI++
Sbjct: 61  YINSPGGSVYDGLGIFDTMQHIKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A +I+ +K +LN    +  G+  E+++   DRD  MS  +A  
Sbjct: 121 HQPLGGARGQASDIRIQADEILFLKDKLNRELAERSGQPLEKIQVDTDRDFFMSPQDAVS 180

Query: 198 WGVVDKVLMSRI 209
           +G++D V+  R 
Sbjct: 181 YGLIDSVIDRRP 192


>gi|291569895|dbj|BAI92167.1| ATP-dependent Clp protease proteolytic subunit [Arthrospira
           platensis NIES-39]
          Length = 236

 Score =  275 bits (704), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 99/205 (48%), Positives = 144/205 (70%)

Query: 3   FEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQ 62
             G           G++PMVVEQ+  GER++D+YSRLL++RI+F+   I+D +A  + AQ
Sbjct: 19  ISGSQPVTINSSAAGVIPMVVEQSGMGERAFDLYSRLLRDRIIFLGTPIDDEVANAVSAQ 78

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           +LFLE+E+P+K+I LYINSPGG VTAGM IYDTMQ I+P + T C G AASMG+ LL++G
Sbjct: 79  MLFLESEDPEKDIQLYINSPGGSVTAGMGIYDTMQQIRPDVVTICYGLAASMGAFLLASG 138

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
             G R +LP++RI++HQP GG  GQA DIE  A++I+  K  LN +  ++ G+  E +  
Sbjct: 139 TAGKRMSLPSSRIMIHQPLGGAQGQAIDIEIQAKEILYHKHTLNTLLAQHTGQPIERINA 198

Query: 183 TLDRDHIMSASEACDWGVVDKVLMS 207
             +RD  MSA+EA ++G++D+V++ 
Sbjct: 199 DTERDFFMSAAEAQEYGLIDQVILK 223


>gi|323527161|ref|YP_004229314.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           sp. CCGE1001]
 gi|323384163|gb|ADX56254.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           sp. CCGE1001]
          Length = 227

 Score =  275 bits (704), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 114/206 (55%), Positives = 152/206 (73%)

Query: 6   CAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF 65
                     LGLVP V+EQ+ RGER+YDIYSRLL+ERIVF+ G + +  A+LI AQLLF
Sbjct: 1   MQSSYLSATGLGLVPTVIEQSGRGERAYDIYSRLLRERIVFLVGPVNEQSASLIVAQLLF 60

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           LE+ENP K+IS YINSPGG V  G+AIYDTMQFIKP +ST C G AASMG+ LL AG++G
Sbjct: 61  LESENPDKDISFYINSPGGSVYDGLAIYDTMQFIKPEVSTLCTGFAASMGTFLLCAGQRG 120

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
            R+ALPNARI++HQPSGG  G A+DI+  A++++ ++ RLN +  +  G++ EE+ +  D
Sbjct: 121 KRYALPNARIMIHQPSGGSQGTAADIDIQAKEVLYLRERLNAMMAERTGRSVEEIARDTD 180

Query: 186 RDHIMSASEACDWGVVDKVLMSRIDI 211
           RD+ MSA  A  +G+VD+VL +R  +
Sbjct: 181 RDNFMSALAAKTYGLVDEVLETRAAL 206


>gi|87201067|ref|YP_498324.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Novosphingobium aromaticivorans DSM 12444]
 gi|115311787|sp|Q2G3T3|CLPP_NOVAD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|87136748|gb|ABD27490.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 235

 Score =  275 bits (704), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 131/211 (62%), Positives = 174/211 (82%)

Query: 2   SFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICA 61
           +F    K  ++ V   L+P+VVEQ++RGERS+DIYSRLL+ERI+FVTG++EDHMA++I A
Sbjct: 12  TFGNQGKFTTDPVTGALIPVVVEQSSRGERSFDIYSRLLRERIIFVTGEVEDHMASVIIA 71

Query: 62  QLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSA 121
           QLLFLE+ENP K+IS+YINSPGGVVTAG+AIYDTMQ+I+P +ST C+GQAASMGS LL+A
Sbjct: 72  QLLFLESENPSKDISMYINSPGGVVTAGLAIYDTMQYIRPRVSTVCIGQAASMGSFLLAA 131

Query: 122 GEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVE 181
           GE GMR ALPNARI++HQPSGG  G ASDIE  A++I++I++R+N++YVK  G++ +E+E
Sbjct: 132 GEPGMRIALPNARIMIHQPSGGARGMASDIEIQAREILRIRKRMNDLYVKFTGRSLDEIE 191

Query: 182 KTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
           K +DRD  + A EA  +G+VDKV  SR   +
Sbjct: 192 KAMDRDTFLEAEEAMKFGLVDKVFESRPATD 222


>gi|254423153|ref|ZP_05036871.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. PCC 7335]
 gi|196190642|gb|EDX85606.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. PCC 7335]
          Length = 201

 Score =  275 bits (704), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 103/190 (54%), Positives = 144/190 (75%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+EQ+ RGER++DIYSRLL+ERI+F+ GQ+      LI AQ+LFLEAE+P+K+I L
Sbjct: 1   MIPTVIEQSGRGERAFDIYSRLLRERIIFLHGQVTADSMNLIVAQMLFLEAEDPEKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG+ +YDTM  I+P ++T CMG AASMG+ LLSAG KG R  LPN R+++
Sbjct: 61  YINSPGGSVSAGLGLYDTMNHIRPDVATICMGLAASMGAFLLSAGAKGKRMILPNGRVMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQA+DIE  A++I+ +K  LNE   K+ G+  E++++  +RD  MS  EA +
Sbjct: 121 HQPSGGAQGQATDIEIQAKEILYLKTMLNEALAKHTGQPLEKIKEDTERDFFMSPQEAME 180

Query: 198 WGVVDKVLMS 207
           +G+VD+V+  
Sbjct: 181 YGLVDQVIDR 190


>gi|150020876|ref|YP_001306230.1| ATP-dependent Clp protease proteolytic subunit [Thermosipho
           melanesiensis BI429]
 gi|149793397|gb|ABR30845.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermosipho
           melanesiensis BI429]
          Length = 202

 Score =  275 bits (704), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 107/187 (57%), Positives = 147/187 (78%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VPMVVE T R ER+YDIYSRLLK+RIVF+   I+DH+A LI AQLLFLEAE+P K+I LY
Sbjct: 9   VPMVVENTGRYERAYDIYSRLLKDRIVFLGSAIDDHVANLIVAQLLFLEAEDPDKDIQLY 68

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG V+AG+AIYDTMQ++K  ++T C+GQAASMG++LL+ G KG RF+LPN+RI++H
Sbjct: 69  INSPGGSVSAGLAIYDTMQYVKCDVTTICIGQAASMGAVLLAGGTKGKRFSLPNSRIMIH 128

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  G A D+E   +++++IK ++NEI   + G+  E +E+  DRD  M+  +A ++
Sbjct: 129 QPLGGAEGPAKDVEIMTKELLRIKNKINEILSLHTGQPIERIERDTDRDFFMTPEDALEY 188

Query: 199 GVVDKVL 205
           G++DKV+
Sbjct: 189 GLIDKVI 195


>gi|225713510|gb|ACO12601.1| ATP-dependent Clp protease proteolytic subunit, mitochondrial
           precursor [Lepeophtheirus salmonis]
          Length = 222

 Score =  275 bits (704), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 121/193 (62%), Positives = 161/193 (83%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
             GLVP+VVEQT RGERSYDIYSRLLK+RI+ + GQ++D ++ L+ AQLLFL+AE+ +K 
Sbjct: 22  MSGLVPIVVEQTGRGERSYDIYSRLLKDRIICLMGQVDDVISGLMVAQLLFLQAESGKKP 81

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I +YINSPGG VTAG+AIYDTMQ+I+PPI+T+C+GQA SMGSLLL+AG KGMR +LPN+R
Sbjct: 82  IHMYINSPGGSVTAGLAIYDTMQYIQPPIATWCVGQACSMGSLLLTAGTKGMRHSLPNSR 141

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQPSG   GQASDI+  AQ+I+ ++ RLN IYVK+ G+  + VEK++DRD+ MSA +
Sbjct: 142 IMVHQPSGQSHGQASDIQIQAQEILNLRARLNNIYVKHTGQPLDIVEKSMDRDNFMSADD 201

Query: 195 ACDWGVVDKVLMS 207
           A  +G++DKVL +
Sbjct: 202 ALKFGLIDKVLET 214


>gi|218885218|ref|YP_002434539.1| ATP-dependent Clp protease proteolytic subunit [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|226706450|sp|B8DNL4|CLPP_DESVM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|218756172|gb|ACL07071.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 201

 Score =  275 bits (704), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 116/197 (58%), Positives = 156/197 (79%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            VP+V+E + R ER+YDIYSRLLK+RI+ +   I+D +A+LICAQLLFLE+ENP+KEI L
Sbjct: 2   PVPIVIETSGRSERAYDIYSRLLKDRIILLGTPIDDQVASLICAQLLFLESENPEKEIYL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGMAIYDTMQ+I  P++T C+GQAASMG+LLL+AG  GMR ALPN+RI++
Sbjct: 62  YINSPGGSVTAGMAIYDTMQYITSPVATLCLGQAASMGALLLAAGAPGMRHALPNSRIMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGGF GQASDI+ HA++++++K  LNEI  ++ G+  E V    +RD+ M  +EA +
Sbjct: 122 HQPSGGFHGQASDIDIHAREVLRMKANLNEIMARHTGQPVERVADDTERDYFMGPAEAKE 181

Query: 198 WGVVDKVLMSRIDIEEK 214
           +G++D +L SR D  + 
Sbjct: 182 YGIIDSILTSRRDATQN 198


>gi|38344435|emb|CAE05641.2| OSJNBa0038O10.7 [Oryza sativa Japonica Group]
 gi|116310954|emb|CAH67891.1| OSIGBa0153E02-OSIGBa0093I20.20 [Oryza sativa Indica Group]
 gi|125549084|gb|EAY94906.1| hypothetical protein OsI_16707 [Oryza sativa Indica Group]
          Length = 259

 Score =  275 bits (704), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 119/193 (61%), Positives = 156/193 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+E T+RGER+YDI+SRLLKERIV + G I D  A+L+ AQLLFLE+ENP K + 
Sbjct: 35  GLVPMVIEHTSRGERAYDIFSRLLKERIVCIHGPITDDTASLVVAQLLFLESENPAKPVH 94

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGVVTAG+AIYDTMQ+I+ P++T C+GQAASM SLLL+AG +G R ALPNAR++
Sbjct: 95  LYINSPGGVVTAGLAIYDTMQYIRSPVTTLCIGQAASMASLLLAAGARGERRALPNARVM 154

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG SGQASDI  HA++I+K++ RLN+IY K+  +  + +E+ ++RD  M   EA 
Sbjct: 155 IHQPSGGASGQASDIAIHAKEILKVRDRLNKIYAKHTSQAIDRIEQCMERDMFMDPEEAH 214

Query: 197 DWGVVDKVLMSRI 209
           DWG++D+V+  R 
Sbjct: 215 DWGLIDEVIEHRP 227


>gi|116785036|gb|ABK23566.1| unknown [Picea sitchensis]
          Length = 243

 Score =  275 bits (704), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 123/193 (63%), Positives = 159/193 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GL+PMV+EQT+RGER+YDI+SRLLKERI+ + G IED  A ++ AQLLFLE+ENP K I+
Sbjct: 32  GLIPMVIEQTSRGERAYDIFSRLLKERIICINGVIEDDTAAVVVAQLLFLESENPAKPIN 91

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGVVTAG+AIYDTMQ+I+ P+STFCMGQAASMGSLLL+AG KG R +LPNARI+
Sbjct: 92  LYINSPGGVVTAGLAIYDTMQYIRSPVSTFCMGQAASMGSLLLAAGAKGERRSLPNARIM 151

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG SGQASDI   A++I+  + RLN +Y K+ G++ +++EK ++RD  MS  EA 
Sbjct: 152 IHQPSGGASGQASDIAIQAKEILLTRDRLNSLYAKHTGQSIDKIEKCMERDMFMSPEEAK 211

Query: 197 DWGVVDKVLMSRI 209
           ++G+VD V+  R 
Sbjct: 212 EFGLVDTVIEQRP 224


>gi|57237197|ref|YP_178209.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           jejuni RM1221]
 gi|86149593|ref|ZP_01067823.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|86151504|ref|ZP_01069719.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. jejuni 260.94]
 gi|86153638|ref|ZP_01071841.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|88597431|ref|ZP_01100666.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. jejuni 84-25]
 gi|148926357|ref|ZP_01810041.1| ATP-dependent clp protease proteolytic subunit [Campylobacter
           jejuni subsp. jejuni CG8486]
 gi|153951283|ref|YP_001397440.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           jejuni subsp. doylei 269.97]
 gi|157414501|ref|YP_001481757.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           jejuni subsp. jejuni 81116]
 gi|205356561|ref|ZP_03223324.1| ATP-dependent CLp protease proteolytic subunit [Campylobacter
           jejuni subsp. jejuni CG8421]
 gi|218561871|ref|YP_002343650.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|315123791|ref|YP_004065795.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           jejuni subsp. jejuni ICDCCJ07001]
 gi|9297087|sp|P54413|CLPP_CAMJE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|67460171|sp|Q5HWX6|CLPP_CAMJR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166201811|sp|A7H1R0|CLPP_CAMJD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|172047014|sp|A8FJZ3|CLPP_CAMJ8 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|57166001|gb|AAW34780.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni RM1221]
 gi|85839861|gb|EAQ57120.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|85841851|gb|EAQ59098.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. jejuni 260.94]
 gi|85842599|gb|EAQ59811.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|88190492|gb|EAQ94466.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. jejuni 84-25]
 gi|112359577|emb|CAL34361.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|145844749|gb|EDK21854.1| ATP-dependent clp protease proteolytic subunit [Campylobacter
           jejuni subsp. jejuni CG8486]
 gi|152938729|gb|ABS43470.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. doylei 269.97]
 gi|157385465|gb|ABV51780.1| ATP-dependent clp protease proteolytic subunit [Campylobacter
           jejuni subsp. jejuni 81116]
 gi|205345566|gb|EDZ32206.1| ATP-dependent CLp protease proteolytic subunit [Campylobacter
           jejuni subsp. jejuni CG8421]
 gi|284925484|gb|ADC27836.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           jejuni subsp. jejuni IA3902]
 gi|307747143|gb|ADN90413.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           jejuni subsp. jejuni M1]
 gi|315017513|gb|ADT65606.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           jejuni subsp. jejuni ICDCCJ07001]
 gi|315057629|gb|ADT71958.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           jejuni subsp. jejuni S3]
 gi|315928124|gb|EFV07442.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. jejuni DFVF1099]
 gi|315930200|gb|EFV09315.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. jejuni 305]
 gi|315931999|gb|EFV10952.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. jejuni 327]
          Length = 194

 Score =  275 bits (704), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 109/190 (57%), Positives = 148/190 (77%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            +P V+E+++RGERSYDIYSRLLK+RI+ ++G+I D +A  I AQLLFLEAE+P K+I L
Sbjct: 2   FIPYVIEKSSRGERSYDIYSRLLKDRIIMLSGEIHDELAASIVAQLLFLEAEDPTKDIYL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+T+G +IYDTM +IKP + T C+GQAASMG+ LLS G +G RFALPN+RI++
Sbjct: 62  YINSPGGVITSGFSIYDTMNYIKPDVCTICIGQAASMGAFLLSCGAEGKRFALPNSRIMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+++K  LN+I  KN  +   ++ K  +RD  MSA EA +
Sbjct: 122 HQPLGGARGQATDIEIQAKEILRLKTILNDILAKNTKQKVAKIAKDTERDFFMSAQEAKE 181

Query: 198 WGVVDKVLMS 207
           +G++DKVL  
Sbjct: 182 YGLIDKVLEK 191


>gi|307244056|ref|ZP_07526175.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Peptostreptococcus stomatis DSM 17678]
 gi|306492580|gb|EFM64614.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Peptostreptococcus stomatis DSM 17678]
          Length = 194

 Score =  275 bits (703), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 107/193 (55%), Positives = 148/193 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP VVEQ  RGERSYDIYSRLLK+RI+F+  ++ D  A+L+ AQLLFLEA++P K+I
Sbjct: 1   MALVPYVVEQDGRGERSYDIYSRLLKDRIIFLGDEVNDATASLVVAQLLFLEADDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG+AIYDTMQ+IKP +ST C+G AASMG+ LL+AG KG R+ALPN+ I
Sbjct: 61  HLYINSPGGSVTAGLAIYDTMQYIKPDVSTICVGMAASMGAFLLAAGAKGKRYALPNSTI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+D+E H + ++  K +LN I  +  G+ Y+ V++  +RD+ M+A + 
Sbjct: 121 MIHQPLGGSRGQATDVEIHTKFLLNTKEKLNTILSQRTGQPYDVVKENTERDNFMTADQG 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D V+ +R
Sbjct: 181 QAFGIIDHVIENR 193


>gi|317495864|ref|ZP_07954227.1| Clp protease [Gemella moribillum M424]
 gi|316914041|gb|EFV35524.1| Clp protease [Gemella moribillum M424]
          Length = 212

 Score =  275 bits (703), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 102/190 (53%), Positives = 143/190 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT++GER+YDIYSRLLK+RI+ +   + D +A  I +QLLFLEA++ +K+I
Sbjct: 1   MNLIPTVIEQTSQGERAYDIYSRLLKDRIIILGSDVNDQVANSITSQLLFLEAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG VTAG AIYDTMQ IK  + T CMG AASMG+ LL+AG  G R+ALPNA +
Sbjct: 61  YFYINSPGGSVTAGFAIYDTMQHIKCDVVTICMGMAASMGAFLLAAGTIGKRYALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I++ + +LN+I     G+T + +E+  +RD+ +SA EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKHILRTREKLNKILADRTGQTIKAIERDTERDNYLSAEEA 180

Query: 196 CDWGVVDKVL 205
           C +G+VDKV+
Sbjct: 181 CAYGLVDKVM 190


>gi|56750021|ref|YP_170722.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus
           elongatus PCC 6301]
 gi|81300363|ref|YP_400571.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus
           elongatus PCC 7942]
 gi|1705929|sp|P54415|CLPP1_SYNE7 RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|67460444|sp|Q5N665|CLPP1_SYNP6 RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|755165|gb|AAC67306.1| ClpP [Synechococcus elongatus PCC 7942]
 gi|56684980|dbj|BAD78202.1| ATP-dependent protease ClpP [Synechococcus elongatus PCC 6301]
 gi|81169244|gb|ABB57584.1| ATP-dependent Clp protease proteolytic subunit ClpP [Synechococcus
           elongatus PCC 7942]
          Length = 197

 Score =  275 bits (703), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 101/192 (52%), Positives = 141/192 (73%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+VVE++ RGER++DIYSRLL+ERI+F+   +   +A  I AQLLFLEAE+P+K+I L
Sbjct: 1   MIPIVVEESGRGERAFDIYSRLLRERIIFLGEPVTSDVANRIVAQLLFLEAEDPEKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I+DTM  I+P +ST C+G AASMG+ LL+AG KG R +L ++RI++
Sbjct: 61  YINSPGGSVYDGLGIFDTMNHIRPDVSTVCVGLAASMGAFLLAAGAKGKRTSLAHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA DIE  A +I+ IK+ LNE+  +  G+    +E   DRD  MSASEA +
Sbjct: 121 HQPLGGAQGQAKDIEIQANEILYIKQNLNEVLAERTGQPLSRIEDDTDRDFFMSASEAVE 180

Query: 198 WGVVDKVLMSRI 209
           +G++D+V+  R 
Sbjct: 181 YGLIDRVIDRRA 192


>gi|284929721|ref|YP_003422243.1| ATP-dependent Clp protease proteolytic subunit ClpP [cyanobacterium
           UCYN-A]
 gi|284810165|gb|ADB95862.1| ATP-dependent Clp protease proteolytic subunit ClpP [cyanobacterium
           UCYN-A]
          Length = 200

 Score =  275 bits (703), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 97/190 (51%), Positives = 140/190 (73%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+E + RGER++DIYSRLL+ERIVF+  ++ D  + LI AQLLFLEAE+P+++I L
Sbjct: 1   MIPTVIETSGRGERAFDIYSRLLRERIVFLGQEVRDENSNLIVAQLLFLEAEDPERDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V++G+ I+DTM  I+P + T C G AASMG+ LLSAG KG R +LPN+RI++
Sbjct: 61  YINSPGGSVSSGLGIFDTMNKIQPDVCTVCTGLAASMGAFLLSAGAKGKRMSLPNSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+ +K  LN     + G+   ++ +  +RD  MSA EA +
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYLKSLLNNHLADHTGQPLSKIAEDTERDFFMSAEEAKN 180

Query: 198 WGVVDKVLMS 207
           +G++D+V+  
Sbjct: 181 YGLIDQVISR 190


>gi|254476195|ref|ZP_05089581.1| Clp protease [Ruegeria sp. R11]
 gi|214030438|gb|EEB71273.1| Clp protease [Ruegeria sp. R11]
          Length = 202

 Score =  275 bits (703), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 124/199 (62%), Positives = 167/199 (83%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQT+RGER+YDI+SRLLKERI+F+ G + D M++LI AQLL LEAENP KEIS
Sbjct: 3   TLVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMSSLIVAQLLHLEAENPSKEIS 62

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGGVVT+G++IYDTMQ+IKP +ST  +GQAASMGSLLL+AGE GMRF+LPN+R++
Sbjct: 63  MYINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLTAGEPGMRFSLPNSRVM 122

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGGF GQA+DI  HA++ +K+K+RLNEIYVK+ G+ Y+ +   L+RD+ MS  EA 
Sbjct: 123 VHQPSGGFQGQATDIMIHAEETLKLKKRLNEIYVKHTGQDYDSIVNALERDNFMSPEEAK 182

Query: 197 DWGVVDKVLMSRIDIEEKS 215
           ++G++D+++ +R  ++   
Sbjct: 183 EFGLIDEIVENRSKLDSDD 201


>gi|87301613|ref|ZP_01084453.1| Clp protease proteolytic subunit [Synechococcus sp. WH 5701]
 gi|87283830|gb|EAQ75784.1| Clp protease proteolytic subunit [Synechococcus sp. WH 5701]
          Length = 213

 Score =  275 bits (703), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 101/190 (53%), Positives = 142/190 (74%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G++P VVEQ+ RGER++DIYSRLL+ERI+F+   I+D +A  + AQLLFLEAE+P+K+I 
Sbjct: 19  GVLPTVVEQSGRGERAFDIYSRLLRERIIFLGTGIDDQVADSLVAQLLFLEAEDPEKDIQ 78

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+NSPGG VTAG+AIYDTMQ + P + T C G AASMG+ LLS G KG R ALP+ARI+
Sbjct: 79  IYVNSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRMALPSARIM 138

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA DIE  A++I+ +K  LN +  ++ G+   ++ +  DRD+ +S  EA 
Sbjct: 139 IHQPLGGAQGQAVDIEIQAKEILFLKDTLNGLMAEHTGQPLAKIAEDTDRDYFLSPPEAV 198

Query: 197 DWGVVDKVLM 206
            +G++D+V+ 
Sbjct: 199 SYGLIDRVVD 208


>gi|118474160|ref|YP_892812.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter fetus
           subsp. fetus 82-40]
 gi|118413386|gb|ABK81806.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           fetus subsp. fetus 82-40]
          Length = 196

 Score =  275 bits (703), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 112/189 (59%), Positives = 148/189 (78%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVE+T++GERSYDIYSRLLK+RI+ ++G+IED MA+ I AQ+LFLEAE+P K+I LY
Sbjct: 5   IPYVVERTSKGERSYDIYSRLLKDRIIMLSGEIEDAMASAIVAQMLFLEAEDPDKDIYLY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGVVT+G +IYDTM +IKP + T C+GQAASMG+ LLS G KG R+ALPN+RI++H
Sbjct: 65  INSPGGVVTSGFSIYDTMNYIKPDVCTICIGQAASMGAFLLSCGTKGKRYALPNSRIMIH 124

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA+DIE  A++I+++K  LN    KN G+   ++ K  DRD  MSA EA ++
Sbjct: 125 QPLGGARGQATDIEIQAKEILRLKEVLNSTLAKNTGQKLAKIAKDTDRDFFMSAHEAAEY 184

Query: 199 GVVDKVLMS 207
           G++D VL  
Sbjct: 185 GLIDNVLEK 193


>gi|88658316|ref|YP_507695.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ehrlichia
           chaffeensis str. Arkansas]
 gi|115311357|sp|Q2GFT8|CLPP_EHRCR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|88599773|gb|ABD45242.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ehrlichia
           chaffeensis str. Arkansas]
          Length = 199

 Score =  275 bits (703), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 135/196 (68%), Positives = 171/196 (87%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT+RGER+YDIYSRLLKERI+F+TG IED MA+LI AQL+FLE+ENP+KEI
Sbjct: 1   MTLVPMVVEQTSRGERAYDIYSRLLKERIIFITGPIEDQMASLIVAQLIFLESENPEKEI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG++IYDTMQ+IKP +ST C+GQAASMGSLLL+AGE GMR+ALPN+RI
Sbjct: 61  CMYINSPGGVVTAGLSIYDTMQYIKPKVSTLCLGQAASMGSLLLAAGEPGMRYALPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGGF GQA+DIE HA++I+ IK RLN+IYVK+ G+   EV   ++RD+ M A +A
Sbjct: 121 MIHQPSGGFQGQATDIEIHAKEILDIKGRLNDIYVKHTGRDLSEVVANMERDNFMRAEKA 180

Query: 196 CDWGVVDKVLMSRIDI 211
            D+G++DKV+  R+DI
Sbjct: 181 KDFGIIDKVIEKRLDI 196


>gi|220903965|ref|YP_002479277.1| Endopeptidase Clp [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
 gi|259585948|sp|B8IYM2|CLPP_DESDA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|219868264|gb|ACL48599.1| Endopeptidase Clp [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
          Length = 202

 Score =  275 bits (703), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 116/202 (57%), Positives = 168/202 (83%), Gaps = 1/202 (0%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+PMV+E T R ER+YDIYSRLLK+RIV +  ++ D +A+LICAQLLFLE+++P+KEI
Sbjct: 1   MSLIPMVIETTGRSERAYDIYSRLLKDRIVLLGSEVNDTVASLICAQLLFLESQDPEKEI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG VTAG+AIYDT++FI  P+ST CMG+AASMG+ LL+AG+ G+R+ALPN++I
Sbjct: 61  SLYINSPGGSVTAGLAIYDTLRFISAPVSTVCMGRAASMGAFLLAAGKPGLRYALPNSQI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPS G+ GQA+DIE HA++++++K RLN I  +N G+ Y+++ K  +RD+ ++  EA
Sbjct: 121 MIHQPSAGYQGQATDIEIHAKEVLRLKERLNRILAENTGRPYKDIVKATERDNFLTPEEA 180

Query: 196 CDWGVVDKVLMSRIDI-EEKSK 216
            D G++D+VL+SR D+ +EKS+
Sbjct: 181 KDLGIIDRVLVSRQDMAQEKSE 202


>gi|254456794|ref|ZP_05070222.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Campylobacterales bacterium GD 1]
 gi|207085586|gb|EDZ62870.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Campylobacterales bacterium GD 1]
          Length = 196

 Score =  275 bits (703), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 116/192 (60%), Positives = 159/192 (82%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P VVE+T RGERSYDIYSRLLK+RI+ ++G++ D +A+ I AQ+LFLEAE+P+K+I
Sbjct: 1   MSYIPYVVEKTGRGERSYDIYSRLLKDRIIMLSGEVNDAVASSIVAQMLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGGVVTAGMAI+DTM +I+P I+T C+GQAASMG+ LLS+GEKG R+ALP+ARI
Sbjct: 61  YFYINSPGGVVTAGMAIFDTMNYIRPHITTICIGQAASMGAFLLSSGEKGKRYALPHARI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI   A++I+++K  LNEI  KN G++ ++VEK  DRD+ MSASEA
Sbjct: 121 MIHQPLGGAQGQATDIAIQAKEILRMKAELNEILAKNTGQSVKKVEKDTDRDNFMSASEA 180

Query: 196 CDWGVVDKVLMS 207
            ++G++D+VL+ 
Sbjct: 181 QEYGMIDEVLVK 192


>gi|313884960|ref|ZP_07818712.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619651|gb|EFR31088.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Eremococcus coleocola ACS-139-V-Col8]
          Length = 200

 Score =  275 bits (703), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 106/200 (53%), Positives = 150/200 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+E T+RGER+YDIYSRLLK+RI+ ++G++ D MA  + AQLLFL+A++P K+I
Sbjct: 1   MNLVPTVIENTSRGERAYDIYSRLLKDRIIMLSGEVNDAMANSVIAQLLFLDAQDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMA+YDTMQFI   + T  +G AASMGS+LL+AG KG R+ALPNA +
Sbjct: 61  YLYINSPGGSVTAGMAMYDTMQFINADVQTIVIGMAASMGSVLLAAGTKGKRWALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+  + RLN+I     G+  E ++K  DRD+ M+A +A
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKHILLTRDRLNKILSDATGQDLEVIQKDTDRDNFMTAQQA 180

Query: 196 CDWGVVDKVLMSRIDIEEKS 215
            D+G++D ++ +   ++EK 
Sbjct: 181 LDYGLIDGIMENAKKLKEKK 200


>gi|163743918|ref|ZP_02151288.1| Protease subunit of ATP-dependent Clp protease [Phaeobacter
           gallaeciensis 2.10]
 gi|161382763|gb|EDQ07162.1| Protease subunit of ATP-dependent Clp protease [Phaeobacter
           gallaeciensis 2.10]
          Length = 202

 Score =  275 bits (703), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 125/199 (62%), Positives = 170/199 (85%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQT+RGER+YDI+SRLLKERI+F+ G + D M++LI AQLL LEAENP KEIS
Sbjct: 3   TLVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMSSLIVAQLLHLEAENPSKEIS 62

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGGVVT+G++IYDTMQ+IKP +ST  +GQAASMGSLLL+AGE GMRF+LPN+R++
Sbjct: 63  MYINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLTAGEAGMRFSLPNSRVM 122

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGGF GQA+DI  HA++ +K+K+RLNEIYVK+ G+ Y+++   L+RD+ MS  EA 
Sbjct: 123 VHQPSGGFQGQATDIMIHAEETLKLKKRLNEIYVKHTGQEYDKIVDALERDNFMSPEEAK 182

Query: 197 DWGVVDKVLMSRIDIEEKS 215
           D+G++D+++ +R  ++++ 
Sbjct: 183 DFGLIDEIVENRSKLDDQD 201


>gi|319778293|ref|YP_004129206.1| ATP-dependent Clp protease proteolytic subunit [Taylorella
           equigenitalis MCE9]
 gi|317108317|gb|ADU91063.1| ATP-dependent Clp protease proteolytic subunit [Taylorella
           equigenitalis MCE9]
          Length = 227

 Score =  275 bits (703), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 113/200 (56%), Positives = 155/200 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG +P V+EQ+ RGER+YDIYSRLLKERI+F+ G++ +  A L+ AQLLFLE+ENP+K+I
Sbjct: 28  LGYIPHVIEQSGRGERAYDIYSRLLKERIIFMVGEVNEQTANLVVAQLLFLESENPEKDI 87

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG V AG+AIYDTMQF+ P +ST C G AASMG+LLL+AG +G R++LPN+RI
Sbjct: 88  SLYINSPGGGVYAGLAIYDTMQFVTPDVSTMCTGLAASMGALLLTAGAEGKRYSLPNSRI 147

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DIE  A++I+ ++ RLN I  K+C K  E + K  +RD+ MS  EA
Sbjct: 148 MIHQPLGGAKGQATDIEIQAREILDLRERLNRILSKHCDKDIEIIRKHTERDYYMSPEEA 207

Query: 196 CDWGVVDKVLMSRIDIEEKS 215
            ++G++D V  +R D+ ++ 
Sbjct: 208 LEFGLIDTVFTNRSDLNKEK 227


>gi|284047279|ref|YP_003397619.1| endopeptidase Clp [Conexibacter woesei DSM 14684]
 gi|283951500|gb|ADB54244.1| Endopeptidase Clp [Conexibacter woesei DSM 14684]
          Length = 194

 Score =  275 bits (703), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 101/194 (52%), Positives = 140/194 (72%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
              LVPMVVEQ+ RGERS+DIYSRLL ER++F+  ++ D +A L+ AQLL LE+ +  K+
Sbjct: 1   MSPLVPMVVEQSPRGERSFDIYSRLLNERVIFLGQEVNDDIANLVVAQLLHLESVDADKD 60

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I+LYINSPGG V+AG AIYDTMQ I+P ++T C+G A SMGS LL  G  G R +LPN+R
Sbjct: 61  INLYINSPGGSVSAGFAIYDTMQLIRPDVATICVGIAMSMGSFLLCGGASGKRMSLPNSR 120

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           IL HQPSGGF GQA+DI+ HA++ +  +RRL E+Y  + G+  E +   ++RD   +  +
Sbjct: 121 ILNHQPSGGFQGQATDIQIHAEEALAARRRLEELYALHTGQPIERIHDDMERDRYFTPEQ 180

Query: 195 ACDWGVVDKVLMSR 208
           A ++G++DK+   R
Sbjct: 181 AVEYGLIDKIYERR 194


>gi|88607298|ref|YP_505537.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Anaplasma
           phagocytophilum HZ]
 gi|115311354|sp|Q2GJB4|CLPP_ANAPZ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|88598361|gb|ABD43831.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Anaplasma
           phagocytophilum HZ]
          Length = 197

 Score =  275 bits (703), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 134/197 (68%), Positives = 174/197 (88%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT RGER+YDIYSRLLKERI+FVTG IED MA+LI AQL+FLEAE+P+K+I
Sbjct: 1   MNLVPMVVEQTGRGERAYDIYSRLLKERIIFVTGPIEDEMASLIVAQLVFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGGVVTAG++IYDTMQ+IKP ++T C+GQAASMGSLLL AG  GMR ALPN+R+
Sbjct: 61  SMYINSPGGVVTAGLSIYDTMQYIKPNVATLCLGQAASMGSLLLCAGAPGMRCALPNSRV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGGF GQA+DIE HA++I++IKRRLNEI+V++ GK+ EE+E +++RD+ M A +A
Sbjct: 121 MIHQPSGGFRGQATDIEIHAREILEIKRRLNEIFVRHTGKSLEEIESSMERDNFMIAEKA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
            D+G++DKV+  RI+ +
Sbjct: 181 RDFGIIDKVIEKRIEEK 197


>gi|254467045|ref|ZP_05080456.1| Clp protease [Rhodobacterales bacterium Y4I]
 gi|206687953|gb|EDZ48435.1| Clp protease [Rhodobacterales bacterium Y4I]
          Length = 202

 Score =  275 bits (703), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 128/198 (64%), Positives = 168/198 (84%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQT+RGER+YDI+SRLLKERI+FV G + D M++LI AQLL LEAENP KEIS
Sbjct: 3   TLVPMVVEQTSRGERAYDIFSRLLKERIIFVNGPVHDGMSSLIVAQLLHLEAENPSKEIS 62

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGGVVT+G++IYDTMQ+IKP +ST  +GQAASMGSLLL+AGEKGMRF+LPN+R++
Sbjct: 63  MYINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLTAGEKGMRFSLPNSRVM 122

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGGF GQA+DI  HA++ +K+K+RLNEIYVK+ G+ YE V   L+RD+ MS  EA 
Sbjct: 123 VHQPSGGFQGQATDIMIHAEETLKLKKRLNEIYVKHTGQDYETVVNALERDNFMSPEEAK 182

Query: 197 DWGVVDKVLMSRIDIEEK 214
            +G++D+++ +R   +++
Sbjct: 183 AFGLIDEIVENRAKGDDE 200


>gi|298529124|ref|ZP_07016527.1| Endopeptidase Clp [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510560|gb|EFI34463.1| Endopeptidase Clp [Desulfonatronospira thiodismutans ASO3-1]
          Length = 202

 Score =  275 bits (703), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 112/198 (56%), Positives = 157/198 (79%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +PMV+E T RGER+YD+YSRLLK+RI+ +   I+DH+A LICAQLLFLE+E+ ++EI+ Y
Sbjct: 5   IPMVIESTGRGERAYDLYSRLLKDRIILLGTPIDDHVANLICAQLLFLESESQEREINFY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDTMQ+I  P++T C+GQAASMG+LLL+AG+ GMR+ALP++RIL+H
Sbjct: 65  INSPGGSVTAGLAIYDTMQYISAPVATLCLGQAASMGALLLAAGQSGMRYALPHSRILIH 124

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GGF GQA+DI+  A++I+++K +LN I   +      ++E   DRD+ + A EA D+
Sbjct: 125 QPMGGFKGQATDIDIQAKEIIRLKSKLNNILAHHTKVDLAKIEHDTDRDYYLEAQEAQDY 184

Query: 199 GVVDKVLMSRIDIEEKSK 216
           G++D VL SR +I++  K
Sbjct: 185 GLIDSVLTSRSEIDKTGK 202


>gi|281356561|ref|ZP_06243052.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Victivallis
           vadensis ATCC BAA-548]
 gi|281316688|gb|EFB00711.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Victivallis
           vadensis ATCC BAA-548]
          Length = 201

 Score =  275 bits (703), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 104/190 (54%), Positives = 143/190 (75%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQT +GER++DIYSRLLK+RI+ +   I+D +A LI AQLLFL+AE+P+K+I L
Sbjct: 7   LVPMVVEQTGQGERAFDIYSRLLKDRIILLGTPIDDDVANLIVAQLLFLQAEDPKKDIDL 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+AIYDTMQ +   + T+C+GQ ASMG++LL AG  G RFALPN+RI++
Sbjct: 67  YINSPGGSVTAGLAIYDTMQILSCDVKTYCVGQCASMGAVLLCAGAAGKRFALPNSRIMI 126

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  G A+D++   ++I ++K  LN I   + G+  +++EK  +RD  M A +A  
Sbjct: 127 HQPWGGAQGTAADMDIQVKEIQRLKAMLNGILSSHSGQPIKKIEKDTERDFFMGAEDAVK 186

Query: 198 WGVVDKVLMS 207
           +G+VDKV+  
Sbjct: 187 YGLVDKVVAR 196


>gi|212704616|ref|ZP_03312744.1| hypothetical protein DESPIG_02679 [Desulfovibrio piger ATCC 29098]
 gi|212672015|gb|EEB32498.1| hypothetical protein DESPIG_02679 [Desulfovibrio piger ATCC 29098]
          Length = 200

 Score =  275 bits (703), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 114/200 (57%), Positives = 170/200 (85%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMV+E T R ER+YDIYSRLLK+RI+ ++ ++ D +A+L+CAQLLFLE+++P+KEI
Sbjct: 1   MSLVPMVIETTGRSERAYDIYSRLLKDRIILLSSEVNDTVASLVCAQLLFLESQDPEKEI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGG VTAG+AIYDTM++I  P+ST CMG+AASMG+ LL+AG+KGMR+ALPN++I
Sbjct: 61  NLYINSPGGSVTAGLAIYDTMRYITAPVSTVCMGRAASMGAFLLAAGQKGMRYALPNSQI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+D++ HA+++++IK RLN +  +N GK+Y+EV +  +RD+ ++  +A
Sbjct: 121 MIHQPLGGFQGQATDVDIHAREMLRIKERLNTMLAENTGKSYDEVVRATERDNFLTPEQA 180

Query: 196 CDWGVVDKVLMSRIDIEEKS 215
            ++G++D+VL+SR D+ EK+
Sbjct: 181 LEFGIIDRVLVSRSDMTEKN 200


>gi|325479715|gb|EGC82805.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 197

 Score =  275 bits (703), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 117/191 (61%), Positives = 158/191 (82%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP VVEQTNRGER+YDIYSRLLK+RI+F++G++ D ++ +I AQLLFLE+E+P K+I  
Sbjct: 7   LVPTVVEQTNRGERAYDIYSRLLKDRIIFLSGEVRDEISDIIIAQLLFLESEDPDKDIQF 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G+AIYDTM +IKP +ST C+GQAASM ++LLS+G KG RF+LP++ I++
Sbjct: 67  YINSPGGVVTSGLAIYDTMNYIKPDVSTICIGQAASMAAVLLSSGAKGKRFSLPSSNIMI 126

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQASDI   A+ I+KIK RLN+I   N G++ +++EK  DRD  MSA+EA +
Sbjct: 127 HQPSGGAQGQASDIVIQAEQIIKIKERLNKILSDNTGQSLKKIEKDTDRDFAMSAAEALE 186

Query: 198 WGVVDKVLMSR 208
           +G++DKV+ S+
Sbjct: 187 YGLIDKVIESK 197


>gi|256828014|ref|YP_003156742.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Desulfomicrobium baculatum DSM 4028]
 gi|256577190|gb|ACU88326.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Desulfomicrobium baculatum DSM 4028]
          Length = 198

 Score =  275 bits (703), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 114/191 (59%), Positives = 154/191 (80%)

Query: 22  VVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS 81
           V+E T RGER YDIYSRLLK+RIV +   I+DH+A  ICAQLLFLE+ENP+K+I +YINS
Sbjct: 8   VIENTGRGERMYDIYSRLLKDRIVLLGTPIDDHVANSICAQLLFLESENPEKQIYMYINS 67

Query: 82  PGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
           PGG VTAGMAIYDTMQ+I  P++T C+GQAASM ++LL+AGEKGMR+ LP++RI++HQP 
Sbjct: 68  PGGAVTAGMAIYDTMQYISAPVATLCIGQAASMAAVLLAAGEKGMRYTLPHSRIMIHQPM 127

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
           GGF GQA+DI   A++I++++  LN I   + G+T E+VE+  +RD+ MS  EAC +G++
Sbjct: 128 GGFQGQATDIAIQAKEIIRLRGELNGILANHTGQTLEKVEQDTERDYFMSGEEACAYGLI 187

Query: 202 DKVLMSRIDIE 212
           D+VL SR ++E
Sbjct: 188 DQVLASRKELE 198


>gi|283955378|ref|ZP_06372877.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. jejuni 414]
 gi|283793138|gb|EFC31908.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. jejuni 414]
          Length = 194

 Score =  275 bits (703), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 109/190 (57%), Positives = 149/190 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            +P V+E+++RGERSYDIYSRLLK+RI+ ++G+I D +A+ I AQLLFLEAE+P K+I L
Sbjct: 2   FIPYVIEKSSRGERSYDIYSRLLKDRIIMLSGEIHDELASSIVAQLLFLEAEDPAKDIYL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+T+G +IYDTM +IKP + T C+GQAASMG+ LLS G +G RFALPN+RI++
Sbjct: 62  YINSPGGVITSGFSIYDTMNYIKPNVCTICIGQAASMGAFLLSCGAEGKRFALPNSRIMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+++K  LN+I  KN  +   ++ K  +RD  MSA EA +
Sbjct: 122 HQPLGGARGQATDIEIQAKEILRLKTILNDILAKNTKQKVAKIAKDTERDFFMSAQEAKE 181

Query: 198 WGVVDKVLMS 207
           +G++DKVL  
Sbjct: 182 YGLIDKVLEK 191


>gi|327438808|dbj|BAK15173.1| protease subunit of ATP-dependent Clp protease [Solibacillus
           silvestris StLB046]
          Length = 196

 Score =  274 bits (702), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 109/192 (56%), Positives = 148/192 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RI+ +   I+D++A  I AQLLFLEAE+P K+I
Sbjct: 1   MNLIPTVIEQTNRGERAYDIYSRLLKDRIILLGSGIDDNVANSIVAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +T+GMAIYDTM FIKP +ST C+G AASMG+ LLSAG KG R +LPNA +
Sbjct: 61  YLYINSPGGSITSGMAIYDTMNFIKPDVSTICIGMAASMGAFLLSAGAKGKRVSLPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+ ++ +LN I  +N G+ YE + +  DRD+ MSA +A
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILHLREKLNRIMAENSGQDYETLARDTDRDNFMSAEQA 180

Query: 196 CDWGVVDKVLMS 207
            ++G++DK+   
Sbjct: 181 LEYGLIDKIYER 192


>gi|224438107|ref|ZP_03659042.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter
           cinaedi CCUG 18818]
 gi|313144547|ref|ZP_07806740.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter
           cinaedi CCUG 18818]
 gi|313129578|gb|EFR47195.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter
           cinaedi CCUG 18818]
          Length = 196

 Score =  274 bits (702), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 110/193 (56%), Positives = 151/193 (78%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
             G +P V+E+T RGERSYDIYSRLLK+RI+ ++G+I DH+A+ I AQLLFLEAE+P K+
Sbjct: 1   MSGYIPFVIERTGRGERSYDIYSRLLKDRIILLSGEINDHIASSIVAQLLFLEAEDPDKD 60

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I+ YINSPGGV+T+  +IYDTM +I+  IST C+GQAAS G+ LLS+G KG RF+LPN+R
Sbjct: 61  INFYINSPGGVITSAFSIYDTMNYIRSDISTICIGQAASAGAFLLSSGTKGKRFSLPNSR 120

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQP GG  GQA+DIE  A++I+++K+ LNEI  +N G++ E + +  +RD  MS  E
Sbjct: 121 IMIHQPLGGAQGQATDIEIQAKEILRLKKILNEIMAENTGQSVENITQDTERDFFMSGEE 180

Query: 195 ACDWGVVDKVLMS 207
           A D+G+VDK+L  
Sbjct: 181 AKDYGLVDKILTK 193


>gi|57168633|ref|ZP_00367765.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           coli RM2228]
 gi|305432739|ref|ZP_07401899.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter coli
           JV20]
 gi|57019914|gb|EAL56594.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           coli RM2228]
 gi|304444248|gb|EFM36901.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter coli
           JV20]
          Length = 194

 Score =  274 bits (702), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 109/190 (57%), Positives = 148/190 (77%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            +P V+E+++RGERSYDIYSRLLK+RI+ ++G+I D +A  I AQLLFLEAE+P K+I L
Sbjct: 2   FIPYVIEKSSRGERSYDIYSRLLKDRIIMLSGEIHDELAASIVAQLLFLEAEDPTKDIYL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+T+G +IYDTM +IKP + T C+GQAASMG+ LLS G +G RFALPN+RI++
Sbjct: 62  YINSPGGVITSGFSIYDTMNYIKPDVCTICIGQAASMGAFLLSCGAEGKRFALPNSRIMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+++K  LN+I  KN  +   ++ K  +RD  MSA EA +
Sbjct: 122 HQPLGGARGQATDIEIQAKEILRLKAILNDILAKNTKQKVAKIVKDTERDFFMSAQEAKE 181

Query: 198 WGVVDKVLMS 207
           +G++DKVL  
Sbjct: 182 YGLIDKVLEK 191


>gi|298491692|ref|YP_003721869.1| ATP-dependent Clp protease proteolytic subunit ClpP ['Nostoc
           azollae' 0708]
 gi|298233610|gb|ADI64746.1| ATP-dependent Clp protease, proteolytic subunit ClpP ['Nostoc
           azollae' 0708]
          Length = 232

 Score =  274 bits (702), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 105/196 (53%), Positives = 146/196 (74%), Gaps = 1/196 (0%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            +VPMVVEQ+  GER++DIYSRLL+ERI+F+   I+D++A  I AQLLFL+AE+  K+I 
Sbjct: 28  NIVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPIDDNVANSIVAQLLFLDAEDSGKDIQ 87

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG V AGMAIYDT+Q I+P + T C G AASMG+ LL+AG  G R +LP++RI+
Sbjct: 88  LYINSPGGSVYAGMAIYDTIQQIRPDVVTICFGLAASMGAFLLTAGTAGKRMSLPDSRIM 147

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA DIE  A++I+ IK  LN++  K+ G+  + +E   +RD  MSA EA 
Sbjct: 148 IHQPLGGAQGQAIDIEIQAREILYIKGNLNQLMAKHTGQPLDRIEADTERDFFMSAEEAK 207

Query: 197 DWGVVDKVLMSRIDIE 212
           ++G++D+V+ SR ++ 
Sbjct: 208 NYGLIDQVI-SRQNLP 222


>gi|217072528|gb|ACJ84624.1| unknown [Medicago truncatula]
          Length = 238

 Score =  274 bits (702), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 118/208 (56%), Positives = 158/208 (75%), Gaps = 5/208 (2%)

Query: 2   SFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICA 61
           SF  C  +        L+PMV+E ++RGER+YDI+SRLLKERIV + G I D  A ++ A
Sbjct: 18  SFSPCRNRAY-----SLIPMVIETSSRGERAYDIFSRLLKERIVCINGPISDDTAHVVVA 72

Query: 62  QLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSA 121
           QLLFLE+ENP K I++Y+NSPGG VTAG+AIYDTMQ+I+ PI+T C+GQAASMGSLLL A
Sbjct: 73  QLLFLESENPSKPINMYLNSPGGAVTAGLAIYDTMQYIRSPINTICLGQAASMGSLLLCA 132

Query: 122 GEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVE 181
           G KG R ALPNA I++HQPSGG+SGQA DI  H + IV++   LNE+YVK+ G+  + ++
Sbjct: 133 GAKGQRRALPNATIMIHQPSGGYSGQAKDIAIHTKQIVRMWDALNELYVKHTGQPLDVIQ 192

Query: 182 KTLDRDHIMSASEACDWGVVDKVLMSRI 209
           K +DRD+ M+A EA ++G++D+V+  R 
Sbjct: 193 KNMDRDYFMTAEEAKEFGIIDEVIDQRP 220


>gi|229815146|ref|ZP_04445483.1| hypothetical protein COLINT_02192 [Collinsella intestinalis DSM
           13280]
 gi|229809376|gb|EEP45141.1| hypothetical protein COLINT_02192 [Collinsella intestinalis DSM
           13280]
          Length = 206

 Score =  274 bits (702), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 100/195 (51%), Positives = 146/195 (74%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
             LVP V+EQT RGERSYDIYSRLL +RIVF+  ++    A L+ AQLL LE+++ +K+I
Sbjct: 7   SALVPYVIEQTPRGERSYDIYSRLLNDRIVFLGEEVNSVTANLVIAQLLHLESQDAEKDI 66

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG V +G+AI DTM +IKP +ST C+G AASM ++LL+AG  G RF+LP+++I
Sbjct: 67  SLYINSPGGEVYSGLAILDTMNYIKPDVSTICVGMAASMAAVLLAAGAPGKRFSLPHSKI 126

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQ ++IE  A++I + +  LN+I     GK +E+VE+  +RD+ + A +A
Sbjct: 127 MIHQPSGGAQGQQTEIEIAAREIRETRNTLNQILADCTGKPFEQVERDTERDNYLRAEQA 186

Query: 196 CDWGVVDKVLMSRID 210
            ++G++D+++ SR D
Sbjct: 187 LEYGLIDRIVTSRND 201


>gi|313499614|gb|ADR60980.1| ClpP [Pseudomonas putida BIRD-1]
          Length = 192

 Score =  274 bits (702), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 117/188 (62%), Positives = 151/188 (80%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MV+EQ+ RGER+YDIYSRLLKER++F+ G +ED+MA L+ AQLLFLEAENP K+I LYIN
Sbjct: 1   MVIEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLVVAQLLFLEAENPDKDIHLYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+ LL+AG KG R  LPN+R+++HQP
Sbjct: 61  SPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAAGAKGKRHCLPNSRVMIHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            GGF GQA+DIE HAQ+I+ IK RLNE+   + G+  E +++  +RD+ MSAS A ++G+
Sbjct: 121 LGGFQGQATDIEIHAQEILNIKARLNELLAYHTGQDLETIKRDTERDNFMSASRAAEYGL 180

Query: 201 VDKVLMSR 208
           +D V   R
Sbjct: 181 IDSVYDKR 188


>gi|317968359|ref|ZP_07969749.1| ATP-dependent Clp protease proteolytic subunit ClpP [Synechococcus
           sp. CB0205]
          Length = 194

 Score =  274 bits (702), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 101/189 (53%), Positives = 143/189 (75%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P VVEQ+ RG+R++DIYSRLL+ERI+F+   I+D +A  + AQLLFLEAE+P+K+I +
Sbjct: 1   MLPTVVEQSGRGDRAFDIYSRLLRERIIFLGSGIDDQVADAMVAQLLFLEAEDPEKDIQI 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG VTAG+AIYDTMQ + P + T C G AASMG+ LLS G KG R ALPNARI++
Sbjct: 61  YVNSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA DIE  A++I+ +K  LN +  ++ G+  E++ +  DRD+ +S +EA  
Sbjct: 121 HQPLGGAQGQAVDIEIQAKEILYLKETLNGLMSEHTGQPLEKIAEDTDRDYFLSPAEAVQ 180

Query: 198 WGVVDKVLM 206
           +G++D+V+ 
Sbjct: 181 YGLIDRVVT 189


>gi|283955633|ref|ZP_06373126.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. jejuni 1336]
 gi|283792858|gb|EFC31634.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. jejuni 1336]
          Length = 194

 Score =  274 bits (702), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 109/190 (57%), Positives = 148/190 (77%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            +P V+E+++RGERSYDIYSRLLK+RI+ ++G+I D +A  I AQLLFLEAE+P K+I L
Sbjct: 2   FIPYVIEKSSRGERSYDIYSRLLKDRIIMLSGEIHDELAASIVAQLLFLEAEDPTKDIYL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+T+G +IYDTM +IKP + T C+GQAASMG+ LLS G +G RFALPN+RI++
Sbjct: 62  YINSPGGVITSGFSIYDTMNYIKPDVCTICIGQAASMGAFLLSCGAEGKRFALPNSRIMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+++K  LN+I  KN  +   ++ K  +RD  MSA EA +
Sbjct: 122 HQPLGGARGQATDIEIQAKEILRLKTILNDILAKNTKQKVTKIAKDTERDFFMSAQEAKE 181

Query: 198 WGVVDKVLMS 207
           +G++DKVL  
Sbjct: 182 YGLIDKVLEK 191


>gi|207091734|ref|ZP_03239521.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 194

 Score =  274 bits (702), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 113/195 (57%), Positives = 154/195 (78%), Gaps = 1/195 (0%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +G +P V+E T+RGERSYDIYSRLLK+RIV ++G+I D +A+ I AQLLFLEAE+P+K+I
Sbjct: 1   MGYIPYVIENTDRGERSYDIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+T+G++IYDTM FI+P +ST C+GQAASMG+ LLS G KG RF+LP++RI
Sbjct: 61  GLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDIE  + +I+++K  +N I   N G++ E++ K  DRD  MSA EA
Sbjct: 121 MIHQPLGGAQGQASDIEIISNEILRLKGLMNSILA-NSGQSLEQIAKDTDRDFYMSAKEA 179

Query: 196 CDWGVVDKVLMSRID 210
            ++G++DKVL   + 
Sbjct: 180 KEYGLIDKVLQKNVK 194


>gi|67459164|ref|YP_246788.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia felis
           URRWXCal2]
 gi|75536404|sp|Q4ULF0|CLPP_RICFE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|67004697|gb|AAY61623.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia felis
           URRWXCal2]
          Length = 201

 Score =  274 bits (702), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 125/201 (62%), Positives = 167/201 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP+V+EQT+RGER+YDIYSRLLKERI+FV   +EDHMA L+ AQLLFLEAENP+K+I
Sbjct: 1   MSYVPIVIEQTSRGERAYDIYSRLLKERIIFVCSTVEDHMANLVVAQLLFLEAENPKKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG+AIYDTMQ+IKP ++T C+GQA SMGSLLL  GEKGMR++LP++RI
Sbjct: 61  YMYINSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSLLLCGGEKGMRYSLPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG+ GQA+DIE HAQ+ +KIKR LNE+Y K+ G+  + +EK+++RD+ MS  EA
Sbjct: 121 MIHQPSGGYRGQATDIEIHAQETLKIKRLLNELYSKHTGQELKHIEKSMERDNFMSPEEA 180

Query: 196 CDWGVVDKVLMSRIDIEEKSK 216
             +G++D ++ SR  +   +K
Sbjct: 181 KKFGIIDNIISSRDAMTMSAK 201


>gi|326803696|ref|YP_004321514.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651369|gb|AEA01552.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Aerococcus urinae ACS-120-V-Col10a]
          Length = 200

 Score =  274 bits (702), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 103/192 (53%), Positives = 146/192 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQ+ RGER+YDIYSRLLK+RI+ ++G++ D MA  + AQLLFL+A++  K+I
Sbjct: 1   MNLVPTVIEQSPRGERAYDIYSRLLKDRIIMLSGEVNDDMANSVIAQLLFLDAQDNDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG VTAGMAIYDTMQF+   + T   G AASMGS+LL  G KG R+ALP++ +
Sbjct: 61  YIYINSPGGSVTAGMAIYDTMQFVNADVVTIVTGLAASMGSILLIGGTKGKRYALPHSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQP GG  GQA++IE  A+ I++ K+ L EI  +  G+  ++VEK +DRD+ M+A EA
Sbjct: 121 LIHQPLGGVQGQATEIEISARHILQTKQTLKEIIAERSGQDIDKVEKDMDRDYWMTAKEA 180

Query: 196 CDWGVVDKVLMS 207
            D+G++D+++ S
Sbjct: 181 KDYGIIDEIMAS 192


>gi|299821953|ref|ZP_07053841.1| ATP-dependent Clp protease proteolytic subunit [Listeria grayi DSM
           20601]
 gi|299817618|gb|EFI84854.1| ATP-dependent Clp protease proteolytic subunit [Listeria grayi DSM
           20601]
          Length = 203

 Score =  274 bits (702), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 103/203 (50%), Positives = 149/203 (73%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
              ++ + L+P V+EQT+RGER+YDIYSRLLK+RI+ +   I+D++A  I AQLLFL+++
Sbjct: 1   MRRNITMNLIPTVIEQTSRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVAQLLFLDSQ 60

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           +P K+I LYINSPGG ++AGMAIYDTM  +K  + T  MG AASMGS LL+AG  G RFA
Sbjct: 61  DPDKDIYLYINSPGGSISAGMAIYDTMNLVKADVQTIGMGMAASMGSFLLAAGADGKRFA 120

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPN+ I++HQP GG  GQA++IE  A+ I+KIK R+N I  +  G+  E + +  DRD+ 
Sbjct: 121 LPNSEIMIHQPLGGAQGQATEIEIAARHILKIKERMNRILSEKTGQPIEVIARDTDRDNF 180

Query: 190 MSASEACDWGVVDKVLMSRIDIE 212
           M+A EA ++G++D ++ S+  ++
Sbjct: 181 MTADEAKEYGLIDDIISSKNALK 203


>gi|255523909|ref|ZP_05390872.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           carboxidivorans P7]
 gi|296185149|ref|ZP_06853559.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           carboxidivorans P7]
 gi|255512340|gb|EET88617.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           carboxidivorans P7]
 gi|296049983|gb|EFG89407.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
           carboxidivorans P7]
          Length = 194

 Score =  274 bits (702), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 114/194 (58%), Positives = 152/194 (78%), Gaps = 2/194 (1%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP+V+E TN GERSYDIYSRLLK+RI+ + G++ D  A++I AQLLFLEA NP ++I
Sbjct: 1   MSYVPVVIEHTNSGERSYDIYSRLLKDRIIMLNGEVTDASASVIVAQLLFLEANNPDEDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG +TAGMAIYDTMQ+IK  +ST C+G AASMGS LL+AGE G R+ALPN+ I
Sbjct: 61  HFYINSPGGSITAGMAIYDTMQYIKSDVSTICVGMAASMGSFLLAAGEPGKRYALPNSEI 120

Query: 136 LLHQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           L+HQPS  GGF GQA+DI+ H   ++K K+++N+IY +  GK  E++EK ++RD+ MSA 
Sbjct: 121 LIHQPSVYGGFQGQATDIKIHTDWLLKTKKKMNKIYSEKTGKPIEQIEKDMERDYFMSAK 180

Query: 194 EACDWGVVDKVLMS 207
           EA ++G+VDK+L  
Sbjct: 181 EAVEYGLVDKILSK 194


>gi|282898110|ref|ZP_06306105.1| Peptidase S14, ClpP [Raphidiopsis brookii D9]
 gi|281197254|gb|EFA72155.1| Peptidase S14, ClpP [Raphidiopsis brookii D9]
          Length = 236

 Score =  274 bits (702), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 107/209 (51%), Positives = 148/209 (70%), Gaps = 1/209 (0%)

Query: 5   GCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLL 64
            C           +VPMVVEQ+  GER++DIYSRLL+ERI+F+   I+D++A  I AQLL
Sbjct: 20  QCGYNGINPSPSSIVPMVVEQSGMGERAFDIYSRLLRERIIFLGTAIDDNVANSIVAQLL 79

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           FL+AE+P+K++ LYINSPGG V AGMAIYDT+Q I+P + T C G AASMG+ LL+AG  
Sbjct: 80  FLDAEDPEKDVQLYINSPGGSVYAGMAIYDTIQQIRPDVVTICFGLAASMGAFLLTAGTA 139

Query: 125 GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
           G R +LP++RI++HQP GG  GQA DIE  A++I+ IK  LN++  K+ G+  E +E   
Sbjct: 140 GKRMSLPDSRIMIHQPLGGAQGQAIDIEIQAREILYIKANLNQLMSKHTGQPLERIEADT 199

Query: 185 DRDHIMSASEACDWGVVDKVLMSRIDIEE 213
           +RD  MS  EA D+G++D+V+ SR ++  
Sbjct: 200 ERDFFMSPQEAKDYGLIDQVI-SRQNLPS 227


>gi|251794211|ref|YP_003008942.1| ATP-dependent Clp protease proteolytic subunit ClpP [Paenibacillus
           sp. JDR-2]
 gi|247541837|gb|ACS98855.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
           sp. JDR-2]
          Length = 195

 Score =  274 bits (702), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 113/192 (58%), Positives = 149/192 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VPMV+EQ+NRGER+YDIYSRLLK+RI+F+   + D +A  I AQ+LFL AE+P+K+I
Sbjct: 3   MNFVPMVIEQSNRGERAYDIYSRLLKDRIIFLGSGVNDVVANSIIAQMLFLAAEDPEKDI 62

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG +TAGMAIYDTMQ+IKP +ST C+G AASMG+ LL+AG  G R+ALPN+ +
Sbjct: 63  SLYINSPGGSITAGMAIYDTMQYIKPDVSTICVGMAASMGAFLLTAGAIGKRYALPNSEV 122

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDIE  A+ I+K++ +LN I  +  G+  E +EK  DRD+ MSA EA
Sbjct: 123 MIHQPLGGAEGQASDIEIRARRIIKMRDKLNGILAERSGQPLERIEKDTDRDYFMSAEEA 182

Query: 196 CDWGVVDKVLMS 207
             +G+VDKV+  
Sbjct: 183 RQYGLVDKVIER 194


>gi|307692047|ref|ZP_07634284.1| ATP-dependent Clp protease proteolytic subunit [Ruminococcaceae
           bacterium D16]
          Length = 193

 Score =  274 bits (701), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 107/193 (55%), Positives = 148/193 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP VVEQTNRGERSYDI+SRLL +RI+F++ ++ D  A+L+ AQLL+LE+++P K+I
Sbjct: 1   MSLVPYVVEQTNRGERSYDIFSRLLNDRIIFLSEEVNDTTASLVVAQLLYLESQDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG VTAGMAIYDTMQ++K  +ST C+G AASMG+ LLSAG KG R ALPN+ I
Sbjct: 61  QFYINSPGGSVTAGMAIYDTMQYVKCDVSTICIGLAASMGAFLLSAGAKGKRLALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPS G  GQ +D+  H + +  +K+R+N I  +N GK+ E+V    +RD+ MSA EA
Sbjct: 121 MIHQPSAGTQGQITDMALHLKRLEVVKKRMNRILAENTGKSIEQVTADCERDNFMSAQEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++D+V+  R
Sbjct: 181 LEYGLIDRVIEKR 193


>gi|257791675|ref|YP_003182281.1| Endopeptidase Clp [Eggerthella lenta DSM 2243]
 gi|317487860|ref|ZP_07946452.1| Clp protease [Eggerthella sp. 1_3_56FAA]
 gi|325830649|ref|ZP_08164070.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Eggerthella sp. HGA1]
 gi|257475572|gb|ACV55892.1| Endopeptidase Clp [Eggerthella lenta DSM 2243]
 gi|316912986|gb|EFV34503.1| Clp protease [Eggerthella sp. 1_3_56FAA]
 gi|325487395|gb|EGC89837.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Eggerthella sp. HGA1]
          Length = 207

 Score =  274 bits (701), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 104/200 (52%), Positives = 143/200 (71%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
            S D    L+P V+EQ+ RGERSYDIYSRLL +R++F+  QI+D++A  + AQLL LE+ 
Sbjct: 1   MSFDPKSALIPYVIEQSPRGERSYDIYSRLLNDRVIFLGEQIDDNVANSVVAQLLHLESA 60

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           +P K+ISLYINSPGG VTAG+AI DTM FIK  +ST C+G+ ASM ++LLS G KG R  
Sbjct: 61  DPDKDISLYINSPGGSVTAGLAILDTMDFIKCDVSTICLGECASMAAVLLSNGAKGKRLC 120

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPN+ +L+HQPSGG  GQ ++I   A  ++K + RLN+I   N G+T E ++   +RD+ 
Sbjct: 121 LPNSMVLIHQPSGGAQGQQTEIAIVADFMLKTRNRLNKILADNTGQTLETIQNDTERDNY 180

Query: 190 MSASEACDWGVVDKVLMSRI 209
           M+A EA  +G+VD++  SR 
Sbjct: 181 MTAEEAVAYGLVDRITTSRA 200


>gi|239618479|ref|YP_002941801.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Kosmotoga
           olearia TBF 19.5.1]
 gi|239507310|gb|ACR80797.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Kosmotoga
           olearia TBF 19.5.1]
          Length = 206

 Score =  274 bits (701), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 98/195 (50%), Positives = 145/195 (74%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
            + +VP VVE   RGER YDI+++LL ERI+F+   ++D ++ ++ AQLLFLE+++P K+
Sbjct: 5   MMPVVPYVVENKGRGERIYDIFTKLLSERIIFLGWPLDDEISNIVVAQLLFLESQDPDKD 64

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           IS+YINSPGG VT+G+AIYDTMQ+IKP +ST C+G AASM +++L+ G KG RFALP++R
Sbjct: 65  ISIYINSPGGSVTSGLAIYDTMQYIKPDVSTICIGMAASMAAVILAGGSKGKRFALPHSR 124

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQP GG  G A DIE   ++++ I+ ++NEI   +  +  E++E+  DRD  MS +E
Sbjct: 125 IMIHQPWGGAEGTAKDIEIRTRELLFIRDQINEILSHHTNQPKEKIEEDTDRDFYMSPAE 184

Query: 195 ACDWGVVDKVLMSRI 209
           A  +G+VDKV+  R 
Sbjct: 185 AVKYGLVDKVIEPRK 199


>gi|226324366|ref|ZP_03799884.1| hypothetical protein COPCOM_02147 [Coprococcus comes ATCC 27758]
 gi|225206814|gb|EEG89168.1| hypothetical protein COPCOM_02147 [Coprococcus comes ATCC 27758]
          Length = 194

 Score =  274 bits (701), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 113/194 (58%), Positives = 150/194 (77%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
              LVP VVEQT+RGERSYDIYSRLLK+RI+F+  ++ D  A+LI AQLLFLEAE+P+K+
Sbjct: 1   MSSLVPYVVEQTSRGERSYDIYSRLLKDRIIFLDTEVNDASASLIVAQLLFLEAEDPEKD 60

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I  YINSPGG ++AGM+IYDTM +IK  +ST CMG AASMG+ LL+ G KG R+ALPNA 
Sbjct: 61  IQFYINSPGGSISAGMSIYDTMNYIKCDVSTMCMGMAASMGAFLLAGGAKGKRYALPNAE 120

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQPSGG  GQA++IE +AQ I+KI+ R+N +   N G++YE +    +RD+  +A E
Sbjct: 121 IMIHQPSGGAQGQATEIEINAQHILKIRERMNRLMAANTGQSYETICADTERDNWKTAEE 180

Query: 195 ACDWGVVDKVLMSR 208
           A  +G++DKV+ SR
Sbjct: 181 ALAYGLIDKVITSR 194


>gi|148244363|ref|YP_001219057.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Vesicomyosocius okutanii HA]
 gi|166214721|sp|A5CXJ8|CLPP_VESOH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|146326190|dbj|BAF61333.1| ATP-dependent Clp protease proteolytic subunit ClpP [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 198

 Score =  274 bits (701), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 123/193 (63%), Positives = 158/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           L  +P+VVEQ+ RGER+YDIYSRLLKERI+F+ G IED+MA ++ AQLLFLE+ENP K+I
Sbjct: 6   LNQIPIVVEQSARGERAYDIYSRLLKERIIFLVGPIEDYMANVVVAQLLFLESENPDKDI 65

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG V+AG+AIYDTMQFIK  IST C+GQAASMG+LLL+AG KG RFALPN R 
Sbjct: 66  HLYINSPGGSVSAGLAIYDTMQFIKSDISTLCIGQAASMGALLLTAGTKGKRFALPNVRC 125

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGFSGQASD++ HAQ+I+K++  LN+I+  + G+  + ++K  DRD+ MSA EA
Sbjct: 126 MIHQPLGGFSGQASDVDIHAQEILKVRANLNQIFKLHTGQVIKTIQKDTDRDNFMSADEA 185

Query: 196 CDWGVVDKVLMSR 208
             +G++DKVL  R
Sbjct: 186 TKYGLIDKVLAKR 198


>gi|326519674|dbj|BAK00210.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 256

 Score =  274 bits (701), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 120/193 (62%), Positives = 155/193 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+E T+RGER+YDI+SRLLKERIV + G I D  A+L+ AQLLFLE+ENP K I 
Sbjct: 30  GLVPMVIEHTSRGERAYDIFSRLLKERIVCIHGPIADDTASLVVAQLLFLESENPAKPIH 89

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGVVTAG+AIYDTMQ+I+ P++T C+GQAASMGSLLL+AG  G R ALPNAR++
Sbjct: 90  LYINSPGGVVTAGLAIYDTMQYIRSPVTTLCIGQAASMGSLLLAAGAPGERRALPNARVM 149

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG SGQASDI   A++I+K++ RLN+IY K+ G+  + +E+ ++RD  M   EA 
Sbjct: 150 IHQPSGGASGQASDIAIQAKEILKVRDRLNKIYAKHTGQAIDRIEQCMERDMFMDPVEAH 209

Query: 197 DWGVVDKVLMSRI 209
            WG++D+V+  R 
Sbjct: 210 AWGLIDEVIEHRP 222


>gi|307252913|ref|ZP_07534801.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306859551|gb|EFM91576.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 190

 Score =  274 bits (701), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 119/187 (63%), Positives = 152/187 (81%)

Query: 22  VVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS 81
           +VEQT++GERSYDIYSRLLKERI+F+TGQ+EDHMA LI AQ+LFLEAE+P+K+I LYINS
Sbjct: 1   MVEQTSKGERSYDIYSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAEDPEKDIYLYINS 60

Query: 82  PGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
           PGGVVTAG+AIYDTM FIKP ++T C GQA SMG+ LLS G KG RFALPNAR+++HQP 
Sbjct: 61  PGGVVTAGLAIYDTMNFIKPDVATLCTGQACSMGAFLLSGGAKGKRFALPNARVMIHQPL 120

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
           GG  GQA+DI+  AQ+I+K+K  L     ++ G+ +E+V    +RD+ MSA EA ++G++
Sbjct: 121 GGARGQATDIQIQAQEILKLKEMLTRKMAEHSGQPFEKVAADTERDNFMSAVEAMEYGLI 180

Query: 202 DKVLMSR 208
           DKVL  R
Sbjct: 181 DKVLTHR 187


>gi|307722032|ref|YP_003893172.1| ATP-dependent Clp protease proteolytic subunit ClpP [Sulfurimonas
           autotrophica DSM 16294]
 gi|306980125|gb|ADN10160.1| ATP-dependent Clp protease proteolytic subunit ClpP [Sulfurimonas
           autotrophica DSM 16294]
          Length = 196

 Score =  274 bits (701), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 112/192 (58%), Positives = 154/192 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P VVE+T RGERSYDIYSRLLK+RIV ++G++ D +A+ I AQ LFLEAE+P+K+I
Sbjct: 1   MSYIPYVVEKTGRGERSYDIYSRLLKDRIVMLSGEVNDAVASTIVAQFLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGGVVTAG+AI+DTM +I+P ++T C+GQAASMG+ LLS GEKG R+ALP+ARI
Sbjct: 61  YFYINSPGGVVTAGLAIFDTMNYIRPHVATICIGQAASMGAFLLSCGEKGKRYALPHARI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI   A++I+++K+ LN I  KN G+  + +E   DRD+ MSA+EA
Sbjct: 121 MIHQPLGGAQGQATDIAIQAEEILRMKKELNGILAKNTGQNIKTIEADTDRDNFMSAAEA 180

Query: 196 CDWGVVDKVLMS 207
            D+G++D+VL+ 
Sbjct: 181 KDYGMIDEVLVK 192


>gi|187735546|ref|YP_001877658.1| Endopeptidase Clp [Akkermansia muciniphila ATCC BAA-835]
 gi|187425598|gb|ACD04877.1| Endopeptidase Clp [Akkermansia muciniphila ATCC BAA-835]
          Length = 218

 Score =  274 bits (701), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 110/216 (50%), Positives = 153/216 (70%), Gaps = 2/216 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           M  +  +K    + +   VPMVVEQ  RGER++DIYSRLLK+R++F+   I+D +A  + 
Sbjct: 1   MFQDQSSKSTPANSY--YVPMVVEQDGRGERAFDIYSRLLKDRVIFIGSAIDDDVANSVI 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFL+  +P+K+I +YINSPGG VTAG+AIYDTMQF+   ++T+C+G AASMGS+LL+
Sbjct: 59  AQLLFLQMADPKKDIHVYINSPGGSVTAGLAIYDTMQFVSCDVNTYCLGIAASMGSVLLA 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG  G RF LPN+ +++HQ SGG  G ASD+ER    +  +K+RLN I  K+ GKT +++
Sbjct: 119 AGTPGKRFCLPNSHVMIHQVSGGAQGTASDVERTIGFMFNLKKRLNGILAKHTGKTEKQI 178

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           EK  DRD+ M+A EA  +G+VDKVL    D +   K
Sbjct: 179 EKDADRDNYMTAEEAVAYGLVDKVLAHHSDDQGDKK 214


>gi|15596998|ref|NP_250492.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa PAO1]
 gi|116049751|ref|YP_791442.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|218892245|ref|YP_002441112.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa LESB58]
 gi|254234895|ref|ZP_04928218.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa C3719]
 gi|254240194|ref|ZP_04933516.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa 2192]
 gi|296389808|ref|ZP_06879283.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa PAb1]
 gi|18203012|sp|Q9I2U1|CLPP1_PSEAE RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|9947784|gb|AAG05190.1|AE004606_4 ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa PAO1]
 gi|115584972|gb|ABJ10987.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|126166826|gb|EAZ52337.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa C3719]
 gi|126193572|gb|EAZ57635.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa 2192]
 gi|218772471|emb|CAW28253.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa LESB58]
          Length = 213

 Score =  274 bits (701), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 122/192 (63%), Positives = 155/192 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMVVEQ+ RGER+YDIYSRLLKERI+F+ GQ+ED+MA L+ AQLLFLEAENP+K+I 
Sbjct: 18  GLVPMVVEQSARGERAYDIYSRLLKERIIFLVGQVEDYMANLVVAQLLFLEAENPEKDIH 77

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+LLL+ G  G R+ LP++R++
Sbjct: 78  LYINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGALLLAGGAAGKRYCLPHSRMM 137

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+ IK RLN+I   + G+  + + +  DRD  MS  EA 
Sbjct: 138 IHQPLGGFQGQASDIEIHAKEILFIKERLNQILAHHTGQPLDVIARDTDRDRFMSGDEAV 197

Query: 197 DWGVVDKVLMSR 208
            +G++DKV+  R
Sbjct: 198 KYGLIDKVMTQR 209


>gi|92117752|ref|YP_577481.1| endopeptidase Clp [Nitrobacter hamburgensis X14]
 gi|116243151|sp|Q1QL76|CLPP_NITHX RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|91800646|gb|ABE63021.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nitrobacter
           hamburgensis X14]
          Length = 211

 Score =  274 bits (700), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 138/208 (66%), Positives = 176/208 (84%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  + ++ LVPMVVEQTNRGER+YDI+SRLLKERI+FVTG +ED+M+ L+ AQLLFLEA
Sbjct: 2   RDPVETYMNLVPMVVEQTNRGERAYDIFSRLLKERIIFVTGPVEDNMSMLVVAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           +NP+KEIS+YINSPGGVVT+G+AIYDTMQFI+PP++T C GQAASMGSLLL+AGEK MR 
Sbjct: 62  DNPKKEISMYINSPGGVVTSGLAIYDTMQFIRPPVATLCTGQAASMGSLLLAAGEKDMRH 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           ALPNARI++HQPSGGF GQA+DI  HAQ+I+ +K+RLNEIYVK+ G+TY+ +E  L+RD 
Sbjct: 122 ALPNARIMVHQPSGGFQGQATDIMLHAQEILNLKKRLNEIYVKHTGQTYKAIEDALERDK 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIEEKSK 216
            ++A  A D+G+VDKV+  R +     K
Sbjct: 182 FLTADMARDFGLVDKVIDKRAEEPAAPK 209


>gi|325922708|ref|ZP_08184448.1| ATP-dependent Clp protease proteolytic subunit ClpP [Xanthomonas
           gardneri ATCC 19865]
 gi|325546825|gb|EGD17939.1| ATP-dependent Clp protease proteolytic subunit ClpP [Xanthomonas
           gardneri ATCC 19865]
          Length = 196

 Score =  274 bits (700), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 119/190 (62%), Positives = 160/190 (84%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MVVEQT+RGER+YDIYSRLLKER++F+ G I+DHMA +I AQLLFLEA+NP+K+IS+YIN
Sbjct: 1   MVVEQTSRGERAYDIYSRLLKERLIFLVGPIDDHMANVIVAQLLFLEADNPEKDISIYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGGVVTAGMAIYDTMQ+IKP +ST C+GQAASMG+LLL++G  G R+ALPN+R+++HQP
Sbjct: 61  SPGGVVTAGMAIYDTMQYIKPDVSTICVGQAASMGALLLASGAAGKRYALPNSRVMIHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            GGF GQA+DI+ HA++I+ ++ RLNEI  K+ G++ E + +  +RD+  SA +A  +G+
Sbjct: 121 LGGFQGQATDIDIHAREILTLRSRLNEILAKHTGQSLETIGRDTERDNFKSAVDAQAYGL 180

Query: 201 VDKVLMSRID 210
           VD+VL  R +
Sbjct: 181 VDQVLERRPE 190


>gi|90423893|ref|YP_532263.1| endopeptidase Clp [Rhodopseudomonas palustris BisB18]
 gi|116243159|sp|Q215J2|CLPP_RHOPB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|90105907|gb|ABD87944.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Rhodopseudomonas palustris BisB18]
          Length = 210

 Score =  274 bits (700), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 137/204 (67%), Positives = 173/204 (84%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  + ++ LVPMVVEQTNRGER+YDI+SRLLKERI+FVTG +ED M+TL  AQLLFLEA
Sbjct: 2   RDPVETYMNLVPMVVEQTNRGERAYDIFSRLLKERIIFVTGPVEDGMSTLTVAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEIS+YINSPGGVVT+G+AIYDTMQFI+PP+ST C GQAASMGSLLL+AG   MRF
Sbjct: 62  ENPKKEISMYINSPGGVVTSGLAIYDTMQFIRPPVSTLCTGQAASMGSLLLAAGHPDMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPN+RI++HQPSGGF GQA+DI  HAQ+I+ +K+RLNEIYVK+ G+TY+ +E  L+RD 
Sbjct: 122 SLPNSRIMVHQPSGGFQGQATDIMLHAQEILNLKKRLNEIYVKHTGQTYKAIEDALERDK 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIE 212
            ++A  A D+G+VDKV+  R +  
Sbjct: 182 FLTADMARDFGIVDKVIDKRSEEP 205


>gi|170049615|ref|XP_001857723.1| ATP-dependent Clp protease proteolytic subunit [Culex
           quinquefasciatus]
 gi|167871378|gb|EDS34761.1| ATP-dependent Clp protease proteolytic subunit [Culex
           quinquefasciatus]
          Length = 225

 Score =  274 bits (700), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 116/206 (56%), Positives = 154/206 (74%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
            S    L LVP+VVEQT RGER+YDI+SRLLKERI+ + G I D +++LI AQLLFL++E
Sbjct: 19  TSASRLLNLVPIVVEQTGRGERAYDIFSRLLKERIICLMGPIHDDLSSLIVAQLLFLQSE 78

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           N  K I +YINSPGG VTAG+AIYDTMQ++KPP++T+C+GQA SMGSLLL+AG  GMR +
Sbjct: 79  NGTKPIHMYINSPGGSVTAGLAIYDTMQYVKPPVATWCVGQACSMGSLLLAAGAPGMRHS 138

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPNARI++HQPSGG  GQA+DI+  A++I+K+K++L EIY K+    YE +   ++RD  
Sbjct: 139 LPNARIMIHQPSGGAQGQATDIQIQAEEILKLKKQLTEIYAKHTKSPYETLLAKMERDTF 198

Query: 190 MSASEACDWGVVDKVLMSRIDIEEKS 215
           ++  EA   G++D VL       E S
Sbjct: 199 LNPEEAQTLGIIDTVLEHPPSSTEVS 224


>gi|186681335|ref|YP_001864531.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nostoc
           punctiforme PCC 73102]
 gi|186463787|gb|ACC79588.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nostoc
           punctiforme PCC 73102]
          Length = 232

 Score =  274 bits (700), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 101/200 (50%), Positives = 147/200 (73%), Gaps = 1/200 (0%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
           +    +VPMVVEQ+  GER++DIYSRLL+ERI+F+   I+D +A  I AQLLFL++E+ +
Sbjct: 24  NSPSNIVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPIDDAVANSIVAQLLFLDSEDSE 83

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K+I +Y+NSPGG V AGMAIYDT+Q I+P + T C G AASMG+ LL+AG  G R +LP+
Sbjct: 84  KDIQMYVNSPGGSVYAGMAIYDTIQQIRPDVVTICFGLAASMGAFLLTAGAAGKRMSLPD 143

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           +RI++HQP GG  GQA DIE  A++I+ +K +LN++   + G+  E +E   +RD  MSA
Sbjct: 144 SRIMIHQPLGGAQGQAIDIEIQAREILYVKAKLNQLMSHHTGQPLERIEADTERDFFMSA 203

Query: 193 SEACDWGVVDKVLMSRIDIE 212
            EA ++G++D+V+ SR ++ 
Sbjct: 204 EEAKNYGLIDQVI-SRQNLP 222


>gi|294101895|ref|YP_003553753.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Aminobacterium colombiense DSM 12261]
 gi|293616875|gb|ADE57029.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Aminobacterium colombiense DSM 12261]
          Length = 193

 Score =  274 bits (700), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 111/192 (57%), Positives = 158/192 (82%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+PMV+EQ+ RGER+YDIYSRLLK+RI+F+  +I+D +A  + AQLLFLE+E+P K+I L
Sbjct: 2   LIPMVIEQSGRGERAYDIYSRLLKDRIIFLGQEIDDPIANTVVAQLLFLESEDPDKDIHL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+++G+AIYDTMQ+IK P+ST C+GQAASM ++LL+ G  G R ALPNAR+++
Sbjct: 62  YINSPGGVISSGLAIYDTMQYIKSPVSTICIGQAASMAAVLLAGGAPGKRIALPNARVMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE HA++I+KI+ ++N+I VK+ G+T + ++   DRD  MSA+EA +
Sbjct: 122 HQPLGGAHGQATDIEIHAKEILKIREKINDILVKHTGQTRKRIKADTDRDFYMSAAEALE 181

Query: 198 WGVVDKVLMSRI 209
           + ++DKV+ SR+
Sbjct: 182 YSIIDKVIESRV 193


>gi|260575566|ref|ZP_05843564.1| Endopeptidase Clp [Rhodobacter sp. SW2]
 gi|259022209|gb|EEW25507.1| Endopeptidase Clp [Rhodobacter sp. SW2]
          Length = 210

 Score =  274 bits (700), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 133/209 (63%), Positives = 172/209 (82%), Gaps = 1/209 (0%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           +D  D ++  LVPMVVEQT+RGER+YDI+SR+LKERI+F++G + D M+ LICAQLLFLE
Sbjct: 2   RDPIDHYMNTLVPMVVEQTSRGERAYDIFSRMLKERIIFLSGPVHDGMSALICAQLLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AENP KEIS+YINSPGGVVT+G++IYDTMQ+IKP IST  +GQAASMGSLLL+AG+KGMR
Sbjct: 62  AENPTKEISMYINSPGGVVTSGLSIYDTMQYIKPRISTLVIGQAASMGSLLLTAGQKGMR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           F+LPN+R+++HQPSGG+ GQA+DI  HAQ+  K+K RLN IYVK+ G+  E V   L+RD
Sbjct: 122 FSLPNSRVMVHQPSGGYQGQATDIMIHAQETQKLKDRLNGIYVKHTGQPMEAVVAALERD 181

Query: 188 HIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           + MSA +A  WG++D+++ SR   EE  K
Sbjct: 182 NFMSAEDAKSWGLIDEIVESRGKAEETPK 210


>gi|157164595|ref|YP_001465991.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           concisus 13826]
 gi|112801723|gb|EAT99067.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           concisus 13826]
          Length = 196

 Score =  274 bits (700), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 114/189 (60%), Positives = 150/189 (79%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP+VVE+T+RGERSYDIYSRLLK+RIV ++G+IED MA  I AQLLFLEAE+P K+I LY
Sbjct: 5   VPVVVERTSRGERSYDIYSRLLKDRIVMLSGEIEDGMAASIVAQLLFLEAEDPDKDIYLY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGV+T+G +IYDTM +IKP + T C+GQAASMG+ LLS G  G R+ALPN+RI++H
Sbjct: 65  INSPGGVITSGFSIYDTMNYIKPDVCTICIGQAASMGAFLLSCGAPGKRYALPNSRIMIH 124

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA+DIE  A++I+++K  LN I  KN G+   ++ K  +RD  MS++EA ++
Sbjct: 125 QPLGGARGQATDIEIQAREILRLKEILNGILAKNTGQKLSKIVKDTERDFFMSSAEAKEY 184

Query: 199 GVVDKVLMS 207
           G+VDK+L  
Sbjct: 185 GLVDKILEK 193


>gi|296284617|ref|ZP_06862615.1| ATP-dependent Clp protease proteolytic subunit [Citromicrobium
           bathyomarinum JL354]
          Length = 228

 Score =  274 bits (700), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 127/193 (65%), Positives = 160/193 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVP+VVEQT+RGERS+DI+SRLL+ERIVF+TG +ED MA+L  AQLLFLE+ENP K IS
Sbjct: 16  ALVPVVVEQTSRGERSFDIFSRLLRERIVFLTGPVEDGMASLAVAQLLFLESENPSKPIS 75

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGGVVTAGMAI+DTMQ+I+P IST C+GQAASMGS LL+AGE GMR ALPNARI+
Sbjct: 76  MYINSPGGVVTAGMAIHDTMQYIQPRISTVCVGQAASMGSFLLAAGEPGMRIALPNARIM 135

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  G ASDIE  A++I++I++ +NE+Y K  G+  E++E+ +DRD  + A EA 
Sbjct: 136 IHQPSGGAQGMASDIEIQAREILRIRKNMNELYAKYTGQPLEKIEEAMDRDTFLDAQEAM 195

Query: 197 DWGVVDKVLMSRI 209
            +G+VDKV  SR 
Sbjct: 196 KFGLVDKVFESRP 208


>gi|328543681|ref|YP_004303790.1| ATP-dependent Clp protease proteolytic subunit [Polymorphum gilvum
           SL003B-26A1]
 gi|326413425|gb|ADZ70488.1| ATP-dependent Clp protease proteolytic subunit [Polymorphum gilvum
           SL003B-26A1]
          Length = 211

 Score =  274 bits (700), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 138/204 (67%), Positives = 177/204 (86%), Gaps = 1/204 (0%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           KD  ++F   LVPMVVEQTNRGER++DIYSRLLKERI+F+TG IED +ATL+CAQLL+LE
Sbjct: 2   KDPVELFTNTLVPMVVEQTNRGERAFDIYSRLLKERIIFLTGPIEDQLATLVCAQLLYLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AENP KEI+LYINSPGG+VT+G+AIYDTMQFI+P +ST C+GQAASMGSLLL+AG+KGMR
Sbjct: 62  AENPNKEIALYINSPGGLVTSGLAIYDTMQFIRPEVSTLCIGQAASMGSLLLAAGQKGMR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           F+LPNAR+++HQPSGGF GQA+DI  HAQ+I+K+KRRLN+IYVK+ G++ + VE+ L+RD
Sbjct: 122 FSLPNARVMVHQPSGGFRGQAADIMLHAQEILKLKRRLNDIYVKHTGQSLDSVEEALERD 181

Query: 188 HIMSASEACDWGVVDKVLMSRIDI 211
           + M+A  A  +G+VD V+  R  +
Sbjct: 182 NFMTADMAKGFGIVDSVISDRASL 205


>gi|307204646|gb|EFN83268.1| Putative ATP-dependent Clp protease proteolytic subunit,
           mitochondrial [Harpegnathos saltator]
          Length = 237

 Score =  274 bits (700), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 111/211 (52%), Positives = 162/211 (76%)

Query: 2   SFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICA 61
           S        +   +L  VP+VVEQ+ RGER+YDIYSRLLKERI+ + G I D++++++ A
Sbjct: 11  SITQTYAHKTSKRYLNFVPVVVEQSGRGERAYDIYSRLLKERIICLMGPITDNVSSVVIA 70

Query: 62  QLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSA 121
           QLLFL++E+ +  I +YINSPGG VTAG+ IYDTMQ++ PP++T+C+GQA SM SLLL+A
Sbjct: 71  QLLFLQSESSKNPIHMYINSPGGSVTAGLGIYDTMQYVLPPVATWCVGQACSMASLLLAA 130

Query: 122 GEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVE 181
           G KGMR +LPNARI+ HQPSGG  GQA+DI+  A +I+K+K+++NE+YVK+ G+  E++E
Sbjct: 131 GAKGMRHSLPNARIMTHQPSGGVQGQATDIQIQALEILKLKKQINELYVKHTGQELEKIE 190

Query: 182 KTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
            +++RD+ MS  +A ++G++DKVL   +  E
Sbjct: 191 SSMERDNFMSPIQAKEFGLIDKVLAHPMQEE 221


>gi|159903385|ref|YP_001550729.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus str. MIT 9211]
 gi|159888561|gb|ABX08775.1| Clp protease subunit [Prochlorococcus marinus str. MIT 9211]
          Length = 196

 Score =  274 bits (700), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 94/192 (48%), Positives = 135/192 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+E++ RGER++DIYSRLL+ERI+F+   + +  A  I AQLLFLEAE+P+K+I L
Sbjct: 1   MIPIVIEESGRGERAFDIYSRLLRERIIFLGEPVTNDSANRIVAQLLFLEAEDPEKDIFL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I+DT++ +KP + T C+G AASMG+ LL AG KG R +L ++RI++
Sbjct: 61  YINSPGGSVYDGLGIFDTIEHVKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLKHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A +I+ +K RLN    +  G+  E + +  DRD  MS  EA +
Sbjct: 121 HQPLGGARGQASDIRIQADEILFLKDRLNNELAERTGQPIERISQDTDRDFYMSPDEALE 180

Query: 198 WGVVDKVLMSRI 209
           +G++D +   R 
Sbjct: 181 YGIIDNIFNKRP 192


>gi|154253670|ref|YP_001414494.1| endopeptidase Clp [Parvibaculum lavamentivorans DS-1]
 gi|154157620|gb|ABS64837.1| Endopeptidase Clp [Parvibaculum lavamentivorans DS-1]
          Length = 213

 Score =  274 bits (700), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 136/203 (66%), Positives = 169/203 (83%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           KD  + ++ LVPMVVEQTNRGER+YDI+SRLLKE I+FV G +ED MA L+ AQLLFLEA
Sbjct: 2   KDPIETYMNLVPMVVEQTNRGERAYDIFSRLLKEHIIFVAGPVEDGMAMLVTAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEIS+YINSPGGVVT+G+AIYDTMQ I+PP+ST CMGQAASMGSLLL+AGEKGMRF
Sbjct: 62  ENPKKEISMYINSPGGVVTSGLAIYDTMQHIRPPVSTVCMGQAASMGSLLLAAGEKGMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           ALPNARI++HQPSGGF GQASDIE HA++ + I+ RLN IY K+ G++ + VE  L+RD+
Sbjct: 122 ALPNARIMVHQPSGGFQGQASDIEIHARETIAIRERLNNIYCKHTGQSLKAVEDALERDN 181

Query: 189 IMSASEACDWGVVDKVLMSRIDI 211
            MS   A ++G++D V + R  +
Sbjct: 182 FMSPERALEFGIIDHVGVDRPPL 204


>gi|258646880|ref|ZP_05734349.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dialister
           invisus DSM 15470]
 gi|260404319|gb|EEW97866.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dialister
           invisus DSM 15470]
          Length = 207

 Score =  274 bits (700), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 113/198 (57%), Positives = 153/198 (77%), Gaps = 1/198 (0%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP+VVEQT+ GERSYDIYSRLLK+RIVF+ G I+DH A +I AQ LFLEAE+P K+I
Sbjct: 1   MPYVPIVVEQTSHGERSYDIYSRLLKDRIVFLDGPIDDHTANVIIAQFLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGGVVTAGMAIYDTMQ+I+P +ST C+G  ASM ++LL+AGEKG R+ALP+A +
Sbjct: 61  HFYINSPGGVVTAGMAIYDTMQYIRPDVSTICIGSCASMAAVLLTAGEKGKRYALPHASV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI  HA++I++++  LN I   + G+T + V K  +RD+ M+A  A
Sbjct: 121 MIHQPLGGAQGQATDIAIHAKEIIRLRSELNGIIAAHSGQTLKTVMKDTERDNFMTADAA 180

Query: 196 CDWGVVDKVLMSRIDIEE 213
             +G++DK+L  R ++ E
Sbjct: 181 LKYGLIDKILT-RNELAE 197


>gi|315639062|ref|ZP_07894230.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           upsaliensis JV21]
 gi|315480838|gb|EFU71474.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           upsaliensis JV21]
          Length = 194

 Score =  274 bits (700), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 112/189 (59%), Positives = 149/189 (78%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+E+T+RGERSYDIYSRLLK+RIV ++G+I D +A+ I AQLLFLEAE+PQK+I LY
Sbjct: 3   IPYVIEKTSRGERSYDIYSRLLKDRIVMLSGEINDDVASSIVAQLLFLEAEDPQKDIYLY 62

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGV+T+G +IYDTM +IKP + T C+GQAASMG+ LLS G K  RFALPN+RI++H
Sbjct: 63  INSPGGVITSGFSIYDTMNYIKPDVCTICIGQAASMGAFLLSCGAKQKRFALPNSRIMIH 122

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA+DIE  A++I+++K  LNEI  +N  +   ++ K  +RD  MSA EA ++
Sbjct: 123 QPLGGARGQATDIEIQAKEILRLKTILNEILAQNTNQKIAKITKDTERDFFMSAVEAKEY 182

Query: 199 GVVDKVLMS 207
           G++DKVL  
Sbjct: 183 GLIDKVLEK 191


>gi|294678131|ref|YP_003578746.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rhodobacter
           capsulatus SB 1003]
 gi|294476951|gb|ADE86339.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhodobacter
           capsulatus SB 1003]
          Length = 209

 Score =  273 bits (699), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 131/205 (63%), Positives = 171/205 (83%), Gaps = 1/205 (0%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           KD  D+++  LVPMVVEQT+RGER+YDIYSRLLKERI+F+ G   D M++LICAQLLFLE
Sbjct: 2   KDPVDLYMNTLVPMVVEQTSRGERAYDIYSRLLKERIIFLAGPFHDGMSSLICAQLLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AENP KEIS+YINSPGGVVT+G+AIYDTMQ+I+P +ST  +GQAASMGS++  AGEKGMR
Sbjct: 62  AENPSKEISMYINSPGGVVTSGLAIYDTMQYIRPKVSTLVIGQAASMGSVIACAGEKGMR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           F+LPN+RI++HQPSGGF GQA+DI  HA++  KI++RL EIYV++ G++ EEV + L+RD
Sbjct: 122 FSLPNSRIMVHQPSGGFQGQATDIMIHARETEKIRQRLYEIYVRHTGRSLEEVAEALERD 181

Query: 188 HIMSASEACDWGVVDKVLMSRIDIE 212
             MS  EA +WG +D++L +R  ++
Sbjct: 182 RFMSPEEALEWGHLDEILSARPSLD 206


>gi|86137328|ref|ZP_01055905.1| Protease subunit of ATP-dependent Clp protease [Roseobacter sp.
           MED193]
 gi|85825663|gb|EAQ45861.1| Protease subunit of ATP-dependent Clp protease [Roseobacter sp.
           MED193]
          Length = 202

 Score =  273 bits (699), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 125/199 (62%), Positives = 167/199 (83%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQT+RGER+YDI+SRLLKERI+F+ G + D M++LI AQLL LEAENP KEIS
Sbjct: 3   TLVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMSSLIVAQLLHLEAENPSKEIS 62

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGGVVT+G++IYDTMQ+IKP +ST  +GQAASMGSLLL+AGE GMRF+LPN+R++
Sbjct: 63  MYINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLTAGEAGMRFSLPNSRVM 122

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGGF GQA+DI  HA++ +K+KRRLNEIYVK+ G+  ++VE  L+RD+ M   EA 
Sbjct: 123 VHQPSGGFQGQATDIMIHAEETLKLKRRLNEIYVKHTGQELDKVEAALERDNFMDPEEAK 182

Query: 197 DWGVVDKVLMSRIDIEEKS 215
            +G++D+++ +R   +++ 
Sbjct: 183 AFGLIDEIVENRAKGDDEE 201


>gi|257065888|ref|YP_003152144.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Anaerococcus
           prevotii DSM 20548]
 gi|256797768|gb|ACV28423.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Anaerococcus
           prevotii DSM 20548]
          Length = 197

 Score =  273 bits (699), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 115/191 (60%), Positives = 158/191 (82%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP VVEQTNRGER+YDIYSRLLK+RI+F++G++ D ++ +I AQLLFLE+E+P K+I  
Sbjct: 7   LVPTVVEQTNRGERAYDIYSRLLKDRIIFLSGEVRDEISDIIIAQLLFLESEDPDKDIQF 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G+AIYDTM +IKP +ST C+GQAASM ++LLS+G KG R++LP++ I++
Sbjct: 67  YINSPGGVVTSGLAIYDTMNYIKPDVSTICIGQAASMAAVLLSSGAKGKRYSLPSSNIMI 126

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQASDI   A+ I+KIK RLN+I   N G++ +++EK  DRD  M+A+EA +
Sbjct: 127 HQPSGGAQGQASDIVIQAEQIIKIKERLNKILSDNTGQSLKKIEKDTDRDFAMTAAEALE 186

Query: 198 WGVVDKVLMSR 208
           +G++DKV+ S+
Sbjct: 187 YGLIDKVIESK 197


>gi|42520204|ref|NP_966119.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|60389690|sp|Q73I59|CLPP_WOLPM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|42409942|gb|AAS14053.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia
           endosymbiont of Drosophila melanogaster]
          Length = 208

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 122/197 (61%), Positives = 167/197 (84%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P+VVEQT+RGER+YDIYSRL+KERI+FVTG IED+MA++I AQLLFLE+ENP K+I
Sbjct: 1   MTLIPIVVEQTSRGERAYDIYSRLVKERIIFVTGPIEDNMASVIVAQLLFLESENPNKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG++IYDTMQ+I P +ST C+GQAASMGSLLL+AG KG R++LP++RI
Sbjct: 61  CMYINSPGGVVTAGLSIYDTMQYINPDVSTLCIGQAASMGSLLLAAGTKGKRYSLPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG+ GQA+DIE HA +I+++K++LN+IY K+ G + +++E  ++RD  M   EA
Sbjct: 121 MIHQPSGGYHGQATDIEIHANEILRVKKKLNQIYEKHTGNSLKKIEGMMERDKFMDPEEA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
              G++D+V+  R DIE
Sbjct: 181 RKIGLIDRVIAERTDIE 197


>gi|95930403|ref|ZP_01313139.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Desulfuromonas acetoxidans DSM 684]
 gi|95133443|gb|EAT15106.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Desulfuromonas acetoxidans DSM 684]
          Length = 196

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 116/192 (60%), Positives = 155/192 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQT RGERSYDIYSRLLK+RI+F+ G I+D ++ L+ AQLLFLE+E+P+K+I
Sbjct: 1   MSLVPIVVEQTGRGERSYDIYSRLLKDRIIFLGGGIDDQISNLVIAQLLFLESEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVTAGMAIYDTMQ+IK P+ST C+GQAASMG++LL+AG +G RF LPN+RI
Sbjct: 61  HLYINSPGGVVTAGMAIYDTMQYIKAPVSTICVGQAASMGAVLLAAGAEGKRFTLPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQASDI  HAQ+I++++  LN I   +C +  E + +  +RD  M A +A
Sbjct: 121 MIHQPLGGFQGQASDISIHAQEILRLREDLNRILAHHCSQDIETIARDTERDFFMGAEDA 180

Query: 196 CDWGVVDKVLMS 207
             +G++DK++M 
Sbjct: 181 QKYGLIDKIVMR 192


>gi|160897495|ref|YP_001563077.1| ATP-dependent Clp protease proteolytic subunit [Delftia acidovorans
           SPH-1]
 gi|160363079|gb|ABX34692.1| Endopeptidase Clp [Delftia acidovorans SPH-1]
          Length = 201

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 119/197 (60%), Positives = 155/197 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQ+ RGERS+DIYSRLL++R++F+ G++ D ++ L+CAQLLFLEAENP K I
Sbjct: 5   MMLVPMVVEQSARGERSFDIYSRLLRDRVIFLNGEVNDAVSALVCAQLLFLEAENPDKPI 64

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+T+G+A+YDTMQFIK P+ T CMG A SMGS LL AGE G R ALPNA +
Sbjct: 65  HLYINSPGGVITSGLAMYDTMQFIKSPVHTLCMGTARSMGSFLLMAGEPGHRMALPNASL 124

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
            +HQP GG  GQASDI  HA+++++ K R+  +Y ++CG++YEEVE+ LDRD  M+A EA
Sbjct: 125 HVHQPLGGVQGQASDIRIHAEEMLRTKDRVTRLYAQHCGRSYEEVERDLDRDRFMTAEEA 184

Query: 196 CDWGVVDKVLMSRIDIE 212
            +WG++DKVL  R    
Sbjct: 185 REWGLIDKVLDRRTATP 201


>gi|109947464|ref|YP_664692.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter
           acinonychis str. Sheeba]
 gi|123066220|sp|Q17XD3|CLPP_HELAH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|109714685|emb|CAJ99693.1| ATP-dependent clp protease proteolytic subunit [Helicobacter
           acinonychis str. Sheeba]
          Length = 195

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 112/195 (57%), Positives = 153/195 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +G +P V+E T+RGERSYDIYSRLLK+RIV ++G+I D +A+ I AQLLFLEAE+P+K+I
Sbjct: 1   MGYIPYVIENTDRGERSYDIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+T+G++IYDTM FI+P +ST C+GQAASMG+ LLS G KG RF+LP++RI
Sbjct: 61  GLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDIE  + +I+++K  +N I  +N  ++ E + K  DRD  MSA EA
Sbjct: 121 MIHQPLGGAQGQASDIEIISNEIIRLKGLMNSILAQNSKQSLERIAKDTDRDFYMSALEA 180

Query: 196 CDWGVVDKVLMSRID 210
            ++G++DKVL   + 
Sbjct: 181 KEYGLIDKVLEKNVK 195


>gi|209525239|ref|ZP_03273781.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Arthrospira
           maxima CS-328]
 gi|209494254|gb|EDZ94567.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Arthrospira
           maxima CS-328]
          Length = 237

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 99/205 (48%), Positives = 143/205 (69%)

Query: 3   FEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQ 62
             G           G++PMVVEQ+  GER++D+YSRLL++RI+F+   I+D +A  + AQ
Sbjct: 20  ISGSQPVTINSSAAGVIPMVVEQSGMGERAFDLYSRLLRDRIIFLGTPIDDEVANAVSAQ 79

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           +LFLE+E+P+K+I LYINSPGG VTAGM IYDTMQ I+P + T C G AASMG+ LL++G
Sbjct: 80  MLFLESEDPEKDIQLYINSPGGSVTAGMGIYDTMQQIRPDVVTICYGLAASMGAFLLASG 139

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
             G R +LP++RI++HQP GG  GQA DIE  A++I+  K  LN +  ++ G+  E +  
Sbjct: 140 TAGKRMSLPSSRIMIHQPLGGAQGQAIDIEIQAKEILYHKHTLNTLLAQHTGQPIERINA 199

Query: 183 TLDRDHIMSASEACDWGVVDKVLMS 207
             +RD  MSA+EA ++G++D V++ 
Sbjct: 200 DTERDFFMSAAEAQEYGLIDNVILK 224


>gi|58584810|ref|YP_198383.1| protease subunit of ATP-dependent Clp protease [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
 gi|67460156|sp|Q5GS83|CLPP_WOLTR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|58419126|gb|AAW71141.1| Protease subunit of ATP-dependent Clp protease [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
          Length = 208

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 120/197 (60%), Positives = 168/197 (85%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P+V+EQT+RGER+YDIYSRL+KERI+FVTG +ED+MA++I AQLLFLE+ENP K+I
Sbjct: 1   MTLIPIVIEQTSRGERAYDIYSRLVKERIIFVTGPVEDNMASVIVAQLLFLESENPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG++IYDTMQ+IKP +ST C+GQAASMGSLLL+AG +G R++LP++RI
Sbjct: 61  YMYINSPGGVVTAGLSIYDTMQYIKPDVSTLCIGQAASMGSLLLAAGTEGKRYSLPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG+ GQA+DIE HA +I+++KR+LN+IY K+ G + +++E  ++RD  M   EA
Sbjct: 121 MIHQPSGGYQGQATDIEIHANEILRVKRKLNQIYEKHTGNSLKKIEGMMERDKFMDPEEA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
              G++D+V+  R DI+
Sbjct: 181 RRIGLIDRVIAERKDIK 197


>gi|224081363|ref|XP_002306383.1| predicted protein [Populus trichocarpa]
 gi|118481948|gb|ABK92906.1| unknown [Populus trichocarpa]
 gi|222855832|gb|EEE93379.1| predicted protein [Populus trichocarpa]
          Length = 244

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 111/208 (53%), Positives = 156/208 (75%), Gaps = 1/208 (0%)

Query: 2   SFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICA 61
           SF    K  +   +  L+PMV+E ++RGER+YDI+SRLLKERIV + G I D  + ++ A
Sbjct: 20  SFLLTPKTSTTRAY-SLIPMVIEHSSRGERAYDIFSRLLKERIVCINGPINDDTSNVVVA 78

Query: 62  QLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSA 121
           QLLFLE+ENP K I +Y+NSPGG VTAG+AIYDTMQ+I+ P++T C+GQAASM SLLL++
Sbjct: 79  QLLFLESENPSKPIHMYLNSPGGHVTAGLAIYDTMQYIRSPVNTICLGQAASMASLLLAS 138

Query: 122 GEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVE 181
           G KG R ALPNA I++HQPSGG+SGQA D+  H + IV++   LN++Y K+ GK  + ++
Sbjct: 139 GAKGERKALPNATIMIHQPSGGYSGQAKDLTIHTKQIVRVWDALNQLYCKHTGKPIDVIQ 198

Query: 182 KTLDRDHIMSASEACDWGVVDKVLMSRI 209
           K +DRD+ M+  EA ++G++D+V+  R 
Sbjct: 199 KNMDRDYFMTPEEAKEFGIIDEVIDQRP 226


>gi|33865835|ref|NP_897394.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           WH 8102]
 gi|67460510|sp|Q7U6N7|CLPP2_SYNPX RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|33633005|emb|CAE07816.1| ATP-dependent Clp protease proteolytic subunit 1 [Synechococcus sp.
           WH 8102]
          Length = 197

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 96/192 (50%), Positives = 136/192 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+E++ RGER++DIYSRLL+ERI+F+   +    A  I AQ+LFLEAE+P+K+I L
Sbjct: 1   MIPIVIEESGRGERAFDIYSRLLRERIIFLGEAVTSDSANRIVAQMLFLEAEDPEKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I+DTMQ IKP + T C+G AASMG+ LL AG KG R +L ++RI++
Sbjct: 61  YINSPGGSVYDGLGIFDTMQHIKPDVHTVCVGLAASMGAFLLCAGTKGKRSSLQHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A +I+ +K RLN+      G+  + +++  DRD  MS  EA +
Sbjct: 121 HQPLGGARGQASDIRIQADEILYLKERLNQELSDRTGQPLDRIQQDTDRDFFMSPGEAVE 180

Query: 198 WGVVDKVLMSRI 209
           +G++D V+  R 
Sbjct: 181 YGLIDSVIDKRP 192


>gi|91076194|ref|XP_971998.1| PREDICTED: similar to caseinolytic protease, ATP-dependent,
           proteolytic subunit homolog [Tribolium castaneum]
 gi|270014730|gb|EFA11178.1| hypothetical protein TcasGA2_TC004785 [Tribolium castaneum]
          Length = 234

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 118/213 (55%), Positives = 162/213 (76%)

Query: 4   EGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQL 63
           +  +K        GLVP+V+EQT RGERSYDIYSRLLKERI+ + G I D M++LI AQL
Sbjct: 10  KALSKVSQPVRNFGLVPIVIEQTGRGERSYDIYSRLLKERIICLMGPINDPMSSLIVAQL 69

Query: 64  LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           LFL++E+  K I +YINSPGG VTAG+ IYDTMQ+I PPI+T+C+GQAASM SLLL+AG 
Sbjct: 70  LFLQSESTNKPIHMYINSPGGSVTAGLGIYDTMQYILPPIATWCVGQAASMASLLLAAGS 129

Query: 124 KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
            GMR +LP+ARI++HQPSGG  GQA+DI+  A++I+K+K ++N +YVK+ G   E++E++
Sbjct: 130 PGMRHSLPHARIMIHQPSGGAQGQATDIKIQAEEILKLKSQINNLYVKHTGLALEKIERS 189

Query: 184 LDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           ++RD  MS  EA  +G++DK+L S    +  S+
Sbjct: 190 MERDMFMSPVEAQSFGIIDKILTSPPKNKAGSE 222


>gi|251797042|ref|YP_003011773.1| ATP-dependent Clp protease proteolytic subunit ClpP [Paenibacillus
           sp. JDR-2]
 gi|247544668|gb|ACT01687.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
           sp. JDR-2]
          Length = 194

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 110/193 (56%), Positives = 143/193 (74%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
               +P VVEQ+NRGERSYDIYSRLLK+RIVF+   I+D +A  I AQLLFL AE+P KE
Sbjct: 1   MSSFIPYVVEQSNRGERSYDIYSRLLKDRIVFLGSAIDDQVANSIVAQLLFLAAEDPDKE 60

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           ISLYINSPGG  TAG AIYDTMQ+IKP + T C+G AAS  ++LL +G KG RFALP++ 
Sbjct: 61  ISLYINSPGGSTTAGFAIYDTMQYIKPEVHTICVGMAASFAAILLLSGAKGKRFALPSSE 120

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           +++HQP GG  GQASDI   A+ I+  + RLN I     G+  E++EK +DRD+ +SA E
Sbjct: 121 VMIHQPHGGAQGQASDIAISAKRILDTRARLNRIAADRTGQPLEKIEKDMDRDYFLSAQE 180

Query: 195 ACDWGVVDKVLMS 207
           A D+G++D+V+ +
Sbjct: 181 ALDYGIIDQVVHT 193


>gi|56964790|ref|YP_176521.1| ATP-dependent Clp protease proteolytic subunit [Bacillus clausii
           KSM-K16]
 gi|67460456|sp|Q5WDK0|CLPP2_BACSK RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|56911033|dbj|BAD65560.1| ATP-dependent Clp protease proteolytic subunit [Bacillus clausii
           KSM-K16]
          Length = 195

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 108/192 (56%), Positives = 155/192 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQTNRGER+YDIYSRLLK+RI+ +   ++D++A  I AQ+LFL+AE+P+K+I
Sbjct: 1   MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSGVDDNVANSIVAQMLFLQAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG +TAGMAIYDTMQFIKP +ST C+G AASMG+ LL+AG KG R ALPN+ +
Sbjct: 61  SLYINSPGGSITAGMAIYDTMQFIKPDVSTICIGMAASMGAFLLTAGAKGKRMALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+D+E HA+ I++++ +LN+I  +  G+ YE + +  DRD+ M+A +A
Sbjct: 121 MIHQPLGGMQGQAADMEIHARRIIQMREKLNQIMAERSGQPYERIARDTDRDNFMTAEQA 180

Query: 196 CDWGVVDKVLMS 207
            ++G++DKV+ +
Sbjct: 181 KEYGLIDKVIET 192


>gi|157964626|ref|YP_001499450.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
           massiliae MTU5]
 gi|157844402|gb|ABV84903.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
           massiliae MTU5]
          Length = 216

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 125/201 (62%), Positives = 166/201 (82%)

Query: 8   KKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
            +  E + +  VP+V+E T+RGER+YDIYSRLLKERI+FV   +EDHMA LI AQLLFLE
Sbjct: 8   HQFQEKILMSYVPIVIEPTSRGERAYDIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLE 67

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AENP+K+I +YINSPGGVVTAG+AIYDTMQ+IKP ++T C+GQA SMGSLLL  GE+GMR
Sbjct: 68  AENPKKDIYIYINSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSLLLCGGEQGMR 127

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           ++LP++RI++HQPSGG+ GQA+DIE HAQ+ +KIKR LNE+Y K+ G+  + +EK+++RD
Sbjct: 128 YSLPHSRIMIHQPSGGYKGQATDIEIHAQETLKIKRLLNELYSKHTGQELKHIEKSMERD 187

Query: 188 HIMSASEACDWGVVDKVLMSR 208
           + MS  EA  +G+VD ++ SR
Sbjct: 188 NFMSPEEAKKFGLVDNIISSR 208


>gi|58696873|ref|ZP_00372388.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|58699505|ref|ZP_00374232.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|225630255|ref|YP_002727046.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia sp.
           wRi]
 gi|254763810|sp|C0R2W3|CLPP_WOLWR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|58533978|gb|EAL58250.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|58536916|gb|EAL60096.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|225592236|gb|ACN95255.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia sp.
           wRi]
          Length = 208

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 122/197 (61%), Positives = 167/197 (84%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P+VVEQT+RGER+YDIYSRL+KERI+FVTG IED+MA++I AQLLFLE+ENP K+I
Sbjct: 1   MTLIPIVVEQTSRGERAYDIYSRLVKERIIFVTGPIEDNMASVIVAQLLFLESENPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG++IYDTMQ+I P +ST C+GQAASMGSLLL+AG KG R++LP++RI
Sbjct: 61  CMYINSPGGVVTAGLSIYDTMQYINPDVSTLCIGQAASMGSLLLAAGTKGKRYSLPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG+ GQA+DIE HA +I+++K++LN+IY K+ G + +++E  ++RD  M   EA
Sbjct: 121 MIHQPSGGYHGQATDIEIHANEILRVKKKLNQIYEKHTGNSLKKIEGMMERDKFMDPEEA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
              G++D+V+  R DIE
Sbjct: 181 RKIGLIDRVIAERTDIE 197


>gi|255565556|ref|XP_002523768.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis]
 gi|223536980|gb|EEF38617.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis]
          Length = 296

 Score =  273 bits (698), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 111/193 (57%), Positives = 153/193 (79%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+E ++RGER+YDI+SRLLKERIV + G I D  A ++ AQLLFLE+ENP K I 
Sbjct: 86  GLVPMVIEHSSRGERAYDIFSRLLKERIVCINGPINDDTAHVVVAQLLFLESENPSKPIH 145

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+NSPGG VTAG+AIYDTMQ+I+ PI+T C+GQAASM SLLL+AG KG R +LPNA I+
Sbjct: 146 MYLNSPGGQVTAGLAIYDTMQYIRSPINTICLGQAASMASLLLAAGAKGERKSLPNATIM 205

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG+SGQA D+  H + IV++   LN++Y K+ G++ + ++K +DRD+ M+  EA 
Sbjct: 206 IHQPSGGYSGQAKDMTIHTKQIVRVWDSLNQLYSKHTGQSVDVIQKNMDRDYFMTPEEAK 265

Query: 197 DWGVVDKVLMSRI 209
           ++G++D+V+  R 
Sbjct: 266 EFGIIDEVIDQRP 278


>gi|124023248|ref|YP_001017555.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus str. MIT 9303]
 gi|123963534|gb|ABM78290.1| Clp protease subunit [Prochlorococcus marinus str. MIT 9303]
          Length = 197

 Score =  273 bits (698), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 96/192 (50%), Positives = 135/192 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+E++ RGER++DIYSRLL+ERI+F+   +    A  I AQ+LFLEAE+P+K+I L
Sbjct: 1   MIPIVIEESGRGERAFDIYSRLLRERIIFLGEPVTSDSANRIVAQMLFLEAEDPEKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I+DTMQ +KP + T C+G AASMG+ LL AG  G R +L ++RI++
Sbjct: 61  YINSPGGSVYDGLGIFDTMQHVKPDVQTVCVGLAASMGAFLLCAGAMGKRSSLQHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A +I+ +K RLN +     G+  E +++  DRD  MS +EA  
Sbjct: 121 HQPLGGARGQASDIRIQADEILFLKDRLNRVLADRTGQPLERIQEDTDRDFFMSPTEAVG 180

Query: 198 WGVVDKVLMSRI 209
           +G+VD V+  R 
Sbjct: 181 YGLVDSVIDKRP 192


>gi|224147635|ref|XP_002336515.1| predicted protein [Populus trichocarpa]
 gi|222835812|gb|EEE74247.1| predicted protein [Populus trichocarpa]
          Length = 201

 Score =  273 bits (698), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 119/197 (60%), Positives = 155/197 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQ+ RGERS+DIYSRLL++R++F+ G++ D ++ L+CAQLLFLEAENP K I
Sbjct: 5   MMLVPMVVEQSARGERSFDIYSRLLRDRVIFLNGEVNDVVSALVCAQLLFLEAENPDKPI 64

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+T+G+A+YDTMQFIK P+ T CMG A SMGS LL AGE G R ALPNA +
Sbjct: 65  HLYINSPGGVITSGLAMYDTMQFIKSPVHTLCMGTARSMGSFLLMAGEPGHRMALPNASL 124

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
            +HQP GG  GQASDI  HA+++++ K R+  +Y ++CG++YEEVE+ LDRD  M+A EA
Sbjct: 125 HVHQPLGGVQGQASDIRIHAEEMLRTKDRVTRLYAQHCGRSYEEVERDLDRDRFMTAEEA 184

Query: 196 CDWGVVDKVLMSRIDIE 212
            +WG++DKVL  R    
Sbjct: 185 REWGLIDKVLDRRTATP 201


>gi|296273946|ref|YP_003656577.1| ATP-dependent Clp protease proteolytic subunit ClpP [Arcobacter
           nitrofigilis DSM 7299]
 gi|296098120|gb|ADG94070.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Arcobacter
           nitrofigilis DSM 7299]
          Length = 194

 Score =  273 bits (698), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 107/192 (55%), Positives = 154/192 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P VVE++ RGERSYDIYSRLLK+RI+ ++G+I D +A+ I AQLLFLEAE+P K+I
Sbjct: 1   MSYIPYVVEKSGRGERSYDIYSRLLKDRIIMLSGEINDPVASTIVAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+T+GM+IYDTM +IKP + T C+GQAASMG+ LLS+G KG R++LPN+R+
Sbjct: 61  YLYINSPGGVITSGMSIYDTMNYIKPDVCTICIGQAASMGAFLLSSGVKGKRYSLPNSRV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQ++DI+  A++I ++K  LN++  +  G+  + +EK  DRD+ MSA EA
Sbjct: 121 MIHQPSGGAQGQSTDIQIQAKEIQRMKDTLNKMIAEQTGQPIKVIEKDTDRDNFMSAEEA 180

Query: 196 CDWGVVDKVLMS 207
           C +G++D+V+ +
Sbjct: 181 CKYGLIDEVITN 192


>gi|217077313|ref|YP_002335031.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermosipho
           africanus TCF52B]
 gi|217037168|gb|ACJ75690.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermosipho
           africanus TCF52B]
          Length = 201

 Score =  273 bits (698), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 107/194 (55%), Positives = 149/194 (76%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           +++    VPMVVE   + ER+YDIYSRLLK+RIVF+   I+DH+A L+ AQLLFLEAE+P
Sbjct: 2   KEIINQYVPMVVESNGKYERAYDIYSRLLKDRIVFLGSAIDDHVANLVVAQLLFLEAEDP 61

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+I LYINSPGG V+AG+AIYDTMQ+IK  ++T C+GQAASMG++LL+ G KG RF+LP
Sbjct: 62  DKDIQLYINSPGGSVSAGLAIYDTMQYIKCDVATICIGQAASMGAVLLAGGTKGKRFSLP 121

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+RI++HQP GG  G A D+E   +++++IK ++NEI   + G+  E +EK  DRD  M+
Sbjct: 122 NSRIMIHQPLGGAEGPAKDVEIMTKELLRIKNKINEILSFHTGQPIERIEKDTDRDFFMT 181

Query: 192 ASEACDWGVVDKVL 205
             EA ++G++DKV+
Sbjct: 182 PEEALEYGLIDKVI 195


>gi|33862948|ref|NP_894508.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus str. MIT 9313]
 gi|67460517|sp|Q7V7R2|CLPP3_PROMM RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
           AltName: Full=Endopeptidase Clp 3
 gi|33634865|emb|CAE20851.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9313]
          Length = 197

 Score =  273 bits (698), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 96/192 (50%), Positives = 135/192 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+E++ RGER++DIYSRLL+ERI+F+   +    A  I AQ+LFLEAE+P+K+I L
Sbjct: 1   MIPIVIEESGRGERAFDIYSRLLRERIIFLGEPVTSDSANRIVAQMLFLEAEDPEKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I+DTMQ +KP + T C+G AASMG+ LL AG  G R +L ++RI++
Sbjct: 61  YINSPGGSVYDGLGIFDTMQHVKPDVQTVCVGLAASMGAFLLCAGAMGKRSSLQHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A +I+ +K RLN +     G+  E +++  DRD  MS +EA  
Sbjct: 121 HQPLGGARGQASDIRIQADEILFLKDRLNRVLADRTGQPLERIQEDTDRDFFMSPAEAVG 180

Query: 198 WGVVDKVLMSRI 209
           +G+VD V+  R 
Sbjct: 181 YGLVDSVIDKRP 192


>gi|210634106|ref|ZP_03297994.1| hypothetical protein COLSTE_01912 [Collinsella stercoris DSM 13279]
 gi|210158957|gb|EEA89928.1| hypothetical protein COLSTE_01912 [Collinsella stercoris DSM 13279]
          Length = 206

 Score =  273 bits (698), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 99/195 (50%), Positives = 146/195 (74%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
             LVP V+EQT RGERSYDIYSRLL +RIVF+  ++    A L+ AQLL LE+++ +K+I
Sbjct: 7   SALVPYVIEQTPRGERSYDIYSRLLNDRIVFLGEEVNSVTANLVIAQLLHLESQDAEKDI 66

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG V +G+AI DTM +IKP +ST C+G AASM ++LL+ G KG RF+LP+++I
Sbjct: 67  SLYINSPGGEVYSGLAILDTMNYIKPDVSTICVGMAASMAAVLLAGGAKGKRFSLPHSKI 126

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQ ++IE  A++I + +  LN+I     GK +++VE+  +RD+ + A +A
Sbjct: 127 MIHQPSGGAQGQQTEIEIAAREIRETRTTLNQILADATGKPFDQVERDTERDNYLRAEQA 186

Query: 196 CDWGVVDKVLMSRID 210
            ++G++D+++ SR D
Sbjct: 187 LEYGLIDRIVSSRSD 201


>gi|163789795|ref|ZP_02184232.1| ATP-dependent Clp protease proteolytic subunit [Carnobacterium sp.
           AT7]
 gi|159875017|gb|EDP69084.1| ATP-dependent Clp protease proteolytic subunit [Carnobacterium sp.
           AT7]
          Length = 197

 Score =  273 bits (698), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 102/196 (52%), Positives = 150/196 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQ++RGER+YDIYSRLLK+RI+ ++G ++D +A  + AQLLFL+A++ +K+I
Sbjct: 1   MNLIPTVIEQSSRGERAYDIYSRLLKDRIIMLSGPVDDDLANAVIAQLLFLDAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG VTAG+AI+DTM FIK  + T  MG AASMGS LL+AG KG R+ALPNA I
Sbjct: 61  YIYINSPGGSVTAGLAIFDTMNFIKADVQTIAMGMAASMGSFLLTAGTKGKRYALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++IE  A+ I+K + RLN+I  +  G+  E +++  DRD+ MSA +A
Sbjct: 121 MIHQPSGGSQGQATEIEIAARHILKTRERLNKILSERTGQPIEVIQRDTDRDNYMSAEDA 180

Query: 196 CDWGVVDKVLMSRIDI 211
             +G++D+++ +   +
Sbjct: 181 KAYGLIDEIMENNSSL 196


>gi|119485223|ref|ZP_01619608.1| Peptidase S14, ClpP [Lyngbya sp. PCC 8106]
 gi|119457451|gb|EAW38576.1| Peptidase S14, ClpP [Lyngbya sp. PCC 8106]
          Length = 238

 Score =  273 bits (698), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 104/207 (50%), Positives = 152/207 (73%), Gaps = 2/207 (0%)

Query: 3   FEGCAKKD--SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           F+  ++K+  S +    ++PMVVEQ+  GER++D+YSRLL++RI+F+   I+D +A  + 
Sbjct: 19  FQSVSQKEIHSTNPANVMIPMVVEQSGMGERAFDLYSRLLRDRIIFLGTAIDDEIANAVS 78

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFL+AE+P+K+I LYINSPGG VTAGM IYDT+Q ++P + T C G AASMG+ LLS
Sbjct: 79  AQMLFLDAEDPEKDIQLYINSPGGSVTAGMGIYDTIQQVRPDVVTICYGLAASMGAFLLS 138

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           +G KG R +LPN+R+++HQP GG  GQA DIE  A++I+  KR LNEI  +N G+  E +
Sbjct: 139 SGTKGKRMSLPNSRVMIHQPLGGTQGQAVDIEIQAREILYHKRILNEILAQNTGQPIERI 198

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMS 207
           E   +RD  MSA E+ ++G++D+V+  
Sbjct: 199 EVDTERDFFMSAEESKEYGLIDQVISK 225


>gi|114767020|ref|ZP_01445928.1| Protease subunit of ATP-dependent Clp protease [Pelagibaca
           bermudensis HTCC2601]
 gi|114540804|gb|EAU43868.1| Protease subunit of ATP-dependent Clp protease [Roseovarius sp.
           HTCC2601]
          Length = 210

 Score =  273 bits (698), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 131/208 (62%), Positives = 174/208 (83%), Gaps = 1/208 (0%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           KD  + ++  LVPMVVEQT+RGER+YDI+SRLLKERI+FV+G + D M++LI AQLL LE
Sbjct: 2   KDPFETYMNTLVPMVVEQTSRGERAYDIFSRLLKERIIFVSGPVHDGMSSLIVAQLLHLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AENP KEIS+YINSPGGVVT+G++IYDTMQ+I+P +ST  +GQAASMGSLLL+AGE GMR
Sbjct: 62  AENPSKEISMYINSPGGVVTSGLSIYDTMQYIRPKVSTLVIGQAASMGSLLLTAGEAGMR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           F+LPN+RI++HQPSGG+ GQA+DI  HA++ +K+KRRLNEIYV++ G+T E VE  L+RD
Sbjct: 122 FSLPNSRIMVHQPSGGYQGQATDIMIHAEETLKLKRRLNEIYVRHTGQTLENVEAALERD 181

Query: 188 HIMSASEACDWGVVDKVLMSRIDIEEKS 215
           + M+  +A +WG++D+++ SR   EE  
Sbjct: 182 NFMAPEDAKEWGLIDEIVESRGAAEEAK 209


>gi|94676878|ref|YP_588715.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
 gi|116243128|sp|Q1LTJ9|CLPP_BAUCH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|94220028|gb|ABF14187.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
          Length = 205

 Score =  273 bits (698), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 128/209 (61%), Positives = 171/209 (81%), Gaps = 4/209 (1%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+      +   + + LVPMVVE+T RGERSYDI+SRLLKERI+F+TG++ED+MA +I 
Sbjct: 1   MSYSC----EYTPLNMALVPMVVERTLRGERSYDIFSRLLKERIIFMTGKVEDYMANIIV 56

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ++FLEAENP+K+I LYINSPGG +T+GM+IYDTMQFIKP +STFCMGQAASMG+ LL+
Sbjct: 57  AQMIFLEAENPEKDIYLYINSPGGNITSGMSIYDTMQFIKPNVSTFCMGQAASMGAFLLA 116

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPNAR+++HQP GGF GQA+DI+ HA++I+K+K R+NE+  K+ GKT + +
Sbjct: 117 AGTKGKRFCLPNARMMIHQPMGGFQGQATDIQIHAKEILKVKNRMNELMAKHIGKTLQVI 176

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           E+  +RD  +SA+EA D+G+VD +L  RI
Sbjct: 177 EQDTERDRFLSANEAVDYGLVDAILSHRI 205


>gi|108804374|ref|YP_644311.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rubrobacter
           xylanophilus DSM 9941]
 gi|116243164|sp|Q1AVS9|CLPP_RUBXD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|108765617|gb|ABG04499.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rubrobacter
           xylanophilus DSM 9941]
          Length = 200

 Score =  273 bits (698), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 110/192 (57%), Positives = 154/192 (80%), Gaps = 1/192 (0%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G++P V+EQ+ RGER+ DIYSRLLK+RI+F+   ++D +A  I AQLL LE+E+P+++I+
Sbjct: 8   GVIPYVIEQSPRGERAMDIYSRLLKDRIIFLGTPVDDQVANAIMAQLLHLESEDPEQDIN 67

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG V+AG+AIYDTMQF+KP I T  +G AASMG+ LL+AG KG RFALPN RIL
Sbjct: 68  LYINSPGGSVSAGLAIYDTMQFVKPDIVTTALGMAASMGAFLLAAGTKGKRFALPNTRIL 127

Query: 137 LHQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           LHQP+ GG +GQASD+E HA+++++ KRRLNEI  ++ G+ Y+++E+  DRD IM A EA
Sbjct: 128 LHQPAVGGLAGQASDVEIHARELIRTKRRLNEILSEHTGQPYDKIERDTDRDFIMGAEEA 187

Query: 196 CDWGVVDKVLMS 207
            ++G++D ++  
Sbjct: 188 IEYGLIDDIVRH 199


>gi|169334562|ref|ZP_02861755.1| hypothetical protein ANASTE_00965 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259279|gb|EDS73245.1| hypothetical protein ANASTE_00965 [Anaerofustis stercorihominis DSM
           17244]
          Length = 193

 Score =  273 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 111/193 (57%), Positives = 151/193 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+PMVVE   R ERSYDIYSRLLK+RI+F++G+I D +A L+ A++LFLE++N +K+I
Sbjct: 1   MPLIPMVVENEGRAERSYDIYSRLLKDRIIFLSGEINDDVANLVVAEMLFLESQNSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMAIYDTM +IK  +ST C+G AASMG+ LL+ GEKG R ALP++ I
Sbjct: 61  QLYINSPGGSVTAGMAIYDTMNYIKCDVSTICIGMAASMGAFLLACGEKGKRIALPSSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQ+SD+E HA+ ++K +  +N+I  K  GKT + +EK  DRD+ MSA EA
Sbjct: 121 MIHQPLGGFQGQSSDVEIHAKRLLKTREDINKILSKRTGKTLKTIEKDTDRDNFMSAKEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++DKV+  R
Sbjct: 181 MEYGLIDKVIEKR 193


>gi|206896158|ref|YP_002247153.1| Clp protease [Coprothermobacter proteolyticus DSM 5265]
 gi|206738775|gb|ACI17853.1| Clp protease [Coprothermobacter proteolyticus DSM 5265]
          Length = 199

 Score =  272 bits (697), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 112/199 (56%), Positives = 155/199 (77%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
              L+P V+EQT RGER YDIYSRLL++RIVF+ G+IE  MA ++ AQLLFLEAE+P+++
Sbjct: 1   MSPLIPYVIEQTPRGERGYDIYSRLLRDRIVFINGEIEPEMAGVVIAQLLFLEAEDPKRD 60

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I +YINSPGG+VT G+AIYDTMQ+I+P + T C+GQAASM ++LL+AG KG RFALPN+R
Sbjct: 61  IYVYINSPGGIVTDGLAIYDTMQYIEPDVVTMCIGQAASMAAILLAAGTKGKRFALPNSR 120

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           ILLHQP GG  GQ +D+E  A+++V+IK+R+NEI   + G+  + + +  DRD I++  E
Sbjct: 121 ILLHQPMGGVQGQVTDVEIQAKELVRIKQRINEILSVHTGQPIDRILQDTDRDFILTPDE 180

Query: 195 ACDWGVVDKVLMSRIDIEE 213
           A  +GV+D+V+  RI  E+
Sbjct: 181 AVQYGVIDQVITKRIRKED 199


>gi|291543930|emb|CBL17039.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ruminococcus
           sp. 18P13]
          Length = 196

 Score =  272 bits (697), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 108/196 (55%), Positives = 152/196 (77%), Gaps = 3/196 (1%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP VVEQT+RGERSYDI+SRLL +RI+ ++  + D  A+L+ AQLL+LE+++P K+I
Sbjct: 1   MSLVPYVVEQTSRGERSYDIFSRLLNDRIIMLSEDVNDTTASLVVAQLLYLESQDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG V+AG AIYDTMQ+IK  +ST C+G AASMG+ LLS+G KG RFALPN+ I
Sbjct: 61  SLYINSPGGSVSAGFAIYDTMQYIKCDVSTICIGLAASMGAFLLSSGAKGKRFALPNSEI 120

Query: 136 LLHQP---SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           ++HQP    GG SGQA+DI+   +++++ K  LN I  +N GK+ E++ +  DRD+ M+A
Sbjct: 121 MIHQPLIGGGGLSGQATDIQIRTENLLRTKENLNRILSENTGKSIEDIRRDTDRDNFMTA 180

Query: 193 SEACDWGVVDKVLMSR 208
           +EA ++G++DKV+  R
Sbjct: 181 NEAMEYGLIDKVIAKR 196


>gi|152986423|ref|YP_001348854.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa PA7]
 gi|150961581|gb|ABR83606.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
           aeruginosa PA7]
          Length = 213

 Score =  272 bits (697), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 121/192 (63%), Positives = 155/192 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMVVEQ+ RGER+YDIYSRLLKERI+F+ GQ+ED+MA L+ AQLLFLEAENP+K+I 
Sbjct: 18  GLVPMVVEQSARGERAYDIYSRLLKERIIFLVGQVEDYMANLVVAQLLFLEAENPEKDIH 77

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+LLL+ G  G R+ LP++R++
Sbjct: 78  LYINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGALLLAGGAAGKRYCLPHSRMM 137

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+ IK RLN++   + G+  + + +  DRD  MS  EA 
Sbjct: 138 IHQPLGGFQGQASDIEIHAKEILFIKERLNQVLAHHTGQPLDVIARDTDRDRFMSGDEAV 197

Query: 197 DWGVVDKVLMSR 208
            +G++DKV+  R
Sbjct: 198 KYGLIDKVMTQR 209


>gi|148242503|ref|YP_001227660.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           RCC307]
 gi|147850813|emb|CAK28307.1| Protease subunit of ATP-dependent Clp protease [Synechococcus sp.
           RCC307]
          Length = 196

 Score =  272 bits (697), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 98/192 (51%), Positives = 139/192 (72%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+E++ RGER++DIYSRLL+ERI+F+   +    A  I AQLLFLEAE+P K+I L
Sbjct: 1   MIPIVIEESGRGERAFDIYSRLLRERIIFMGEPVTAESANRIVAQLLFLEAEDPDKDIFL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I+DTMQ +KP + T C+G AASMG+ LL+AG  G R +L ++RI++
Sbjct: 61  YINSPGGSVYDGLGIFDTMQHVKPDVQTVCVGLAASMGAFLLAAGAPGKRSSLQHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A +I+ +K+RLNE   +  G+  + ++K  DRD  MS +EA +
Sbjct: 121 HQPLGGAQGQASDIRIQADEILFLKKRLNEELAQRTGQPLDRIQKDTDRDFFMSPAEAAE 180

Query: 198 WGVVDKVLMSRI 209
           +G++DKV+  R 
Sbjct: 181 YGLIDKVIDQRP 192


>gi|163736126|ref|ZP_02143545.1| Endopeptidase Clp [Phaeobacter gallaeciensis BS107]
 gi|161389996|gb|EDQ14346.1| ATP-dependent Clp protease proteolytic subunit [Phaeobacter
           gallaeciensis BS107]
          Length = 202

 Score =  272 bits (697), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 124/199 (62%), Positives = 170/199 (85%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQT+RGER+YDI+SRLLKERI+F+ G + D M++LI AQLL LEAENP KEIS
Sbjct: 3   TLVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMSSLIVAQLLHLEAENPSKEIS 62

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGGVVT+G++IYDTMQ+IKP +ST  +GQAASMGSLLL+AGE GMRF+LPN+R++
Sbjct: 63  MYINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLTAGEAGMRFSLPNSRVM 122

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGGF GQA+DI  HA++ +K+K+RLNEIYVK+ G+ Y+++   L+RD+ MS  +A 
Sbjct: 123 VHQPSGGFQGQATDIMIHAEETLKLKKRLNEIYVKHTGQEYDKIVDALERDNFMSPEDAK 182

Query: 197 DWGVVDKVLMSRIDIEEKS 215
           D+G++D+++ +R  ++++ 
Sbjct: 183 DFGLIDEIVENRSKLDDQD 201


>gi|298292194|ref|YP_003694133.1| ATP-dependent Clp protease proteolytic subunit ClpP [Starkeya
           novella DSM 506]
 gi|296928705|gb|ADH89514.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Starkeya
           novella DSM 506]
          Length = 210

 Score =  272 bits (697), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 141/203 (69%), Positives = 174/203 (85%), Gaps = 1/203 (0%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           +D  D ++  LVPMVVEQTNRGERSYDIYSRLLKERI+F+TG +ED+MATL+ AQLLFLE
Sbjct: 2   RDPIDTYMNYLVPMVVEQTNRGERSYDIYSRLLKERIIFLTGPVEDNMATLMVAQLLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AENP+KEIS+YINSPGGVVT+G+AIYDTMQFIKP +ST C+GQAASMGSLLL+AGEKGMR
Sbjct: 62  AENPKKEISMYINSPGGVVTSGLAIYDTMQFIKPAVSTLCIGQAASMGSLLLTAGEKGMR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           FALPNARI++HQPSGGF GQ +DI  HAQ+I+ +K+RLNEIYVK+ G+  + VE  L+RD
Sbjct: 122 FALPNARIMVHQPSGGFQGQVTDIMLHAQEILSLKKRLNEIYVKHTGQDLKAVEDALERD 181

Query: 188 HIMSASEACDWGVVDKVLMSRID 210
           + M++  A  +G++D V+  R D
Sbjct: 182 NFMTSDNAKSFGLIDNVIDKRPD 204


>gi|225714260|gb|ACO12976.1| ATP-dependent Clp protease proteolytic subunit, mitochondrial
           precursor [Lepeophtheirus salmonis]
          Length = 222

 Score =  272 bits (697), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 120/190 (63%), Positives = 160/190 (84%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+VVEQT RGERSYDIYSRLLK+RI+ + GQ++D ++ L+ AQLLFL+AE+ +K I +
Sbjct: 25  LVPIVVEQTGRGERSYDIYSRLLKDRIICLMGQVDDVISGLMVAQLLFLQAESGKKPIHM 84

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+AIYDTMQ+I+PPI+T+C+GQA SMGSLLL+AG KGMR +LPN+RI++
Sbjct: 85  YINSPGGSVTAGLAIYDTMQYIQPPIATWCVGQACSMGSLLLTAGTKGMRHSLPNSRIMV 144

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSG   GQASDI+  AQ+I+ ++ RLN IYVK+ G+  + VEK++DRD+ MSA +A  
Sbjct: 145 HQPSGQSHGQASDIQIQAQEILNLRARLNNIYVKHTGQPLDIVEKSMDRDNFMSADDALK 204

Query: 198 WGVVDKVLMS 207
           +G++DKVL +
Sbjct: 205 FGLIDKVLET 214


>gi|256074339|ref|XP_002573483.1| peptidase Clp (S14 family) [Schistosoma mansoni]
 gi|238658663|emb|CAZ29715.1| peptidase Clp (S14 family) [Schistosoma mansoni]
          Length = 632

 Score =  272 bits (697), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 104/194 (53%), Positives = 150/194 (77%)

Query: 14  VFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQK 73
            ++ L+PMV++++   ER YDIYSRLLK+RI+ + G + D MA  + AQLLFL++E+ + 
Sbjct: 40  NYIPLIPMVLDKSTNVERYYDIYSRLLKDRIICLMGAVTDEMAGSVIAQLLFLQSEDKRT 99

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
            I LYINSPGG VTAG+AIYDTMQFI+PP++TFC+GQA+SMGSLLL+AG  G RFALP++
Sbjct: 100 PIHLYINSPGGSVTAGLAIYDTMQFIRPPVATFCIGQASSMGSLLLAAGSHGCRFALPHS 159

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            I++HQPSG   GQASDI+  A+++++ +  +N IY ++  ++ E +EK +DRD+ M+A 
Sbjct: 160 SIMVHQPSGSAHGQASDIKIRAEELIRTRSVINTIYERHTKQSQEVIEKWMDRDYFMTAE 219

Query: 194 EACDWGVVDKVLMS 207
           EA  +G+VD+VL  
Sbjct: 220 EAVSYGIVDRVLHK 233


>gi|157364285|ref|YP_001471052.1| ATP-dependent Clp protease proteolytic subunit [Thermotoga
           lettingae TMO]
 gi|167008651|sp|A8F754|CLPP_THELT RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|157314889|gb|ABV33988.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermotoga
           lettingae TMO]
          Length = 199

 Score =  272 bits (697), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 112/191 (58%), Positives = 146/191 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P V+E T R ER+YDIYSRLLK+RIVF+   I+DH+A L+ AQLLFLEAE+P K+I L
Sbjct: 7   LIPTVIESTGRYERAYDIYSRLLKDRIVFLGYAIDDHVANLVVAQLLFLEAEDPDKDIQL 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+AIYDTMQ+IK  + T C+GQAASM ++LL++G KG RFALPNARI+L
Sbjct: 67  YINSPGGSVTAGLAIYDTMQYIKSDVVTICVGQAASMAAVLLASGTKGKRFALPNARIML 126

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  G   D+E   +++++IK  +N I  +  G+  + +EK  DRD  MSA EA D
Sbjct: 127 HQPLGGAEGPVKDVEIITKELLRIKNLINTILSEKTGQPLDRIEKDTDRDFFMSAYEALD 186

Query: 198 WGVVDKVLMSR 208
           +G+VDKV+ S+
Sbjct: 187 YGLVDKVIESK 197


>gi|154175235|ref|YP_001407437.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           curvus 525.92]
 gi|112803266|gb|EAU00610.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           curvus 525.92]
          Length = 196

 Score =  272 bits (697), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 113/189 (59%), Positives = 150/189 (79%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP+VVE+T+RGERSYDIYSRLLK+RIV ++G+IED MA  I AQLLFLEAE+P+K+I LY
Sbjct: 5   VPVVVERTSRGERSYDIYSRLLKDRIVMLSGEIEDGMAASIVAQLLFLEAEDPEKDIYLY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGV+T+G +I+DTM +IKP + T C+GQAASMG+ LLS G  G R+ALPN+RI++H
Sbjct: 65  INSPGGVITSGFSIFDTMNYIKPDVCTICIGQAASMGAFLLSCGAPGKRYALPNSRIMIH 124

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQASDIE  A++I+++K  LN I  KN G+   ++ K  +RD  MS+ EA ++
Sbjct: 125 QPLGGARGQASDIEIQAREILRLKEILNGILAKNTGQKLNKIVKDTERDFFMSSHEAKEY 184

Query: 199 GVVDKVLMS 207
           G++DK+L  
Sbjct: 185 GLIDKILEK 193


>gi|319941575|ref|ZP_08015901.1| ATP-dependent Clp protease proteolytic subunit [Sutterella
           wadsworthensis 3_1_45B]
 gi|319804945|gb|EFW01787.1| ATP-dependent Clp protease proteolytic subunit [Sutterella
           wadsworthensis 3_1_45B]
          Length = 196

 Score =  272 bits (697), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 112/196 (57%), Positives = 160/196 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVE + R ERS+DIYSRLL++RI+F+T ++ D  A+LI AQLLFLE+E+P K+I
Sbjct: 1   MSLVPIVVESSGRSERSFDIYSRLLRDRIIFLTTEVNDQTASLIVAQLLFLESEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG V+AGM+I+DTM+FI+P ++T C+G AASMG+ LL+AGEKG R+ALP++RI
Sbjct: 61  SLYINSPGGSVSAGMSIFDTMRFIRPKVNTICLGMAASMGAFLLAAGEKGKRYALPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASD+E  A+ ++ IKR++NE+     G++Y+E+ +  DRD+ MSA EA
Sbjct: 121 MIHQPLGGAEGQASDVEIRARQLLLIKRQMNELMAGFTGRSYDELVRDTDRDNFMSAQEA 180

Query: 196 CDWGVVDKVLMSRIDI 211
            ++G++D+VL SR D+
Sbjct: 181 LEYGLIDRVLTSRADL 196


>gi|227500202|ref|ZP_03930271.1| endopeptidase Clp [Anaerococcus tetradius ATCC 35098]
 gi|227217724|gb|EEI83028.1| endopeptidase Clp [Anaerococcus tetradius ATCC 35098]
          Length = 197

 Score =  272 bits (697), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 114/191 (59%), Positives = 156/191 (81%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP VVEQTNRGER+YDIYSRLLK+RI+F++G++ D ++ +I AQLLFLE+E+P K+I  
Sbjct: 7   LVPTVVEQTNRGERAYDIYSRLLKDRIIFLSGEVRDEISDIIIAQLLFLESEDPDKDIQF 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G+AIYDTM +IKP +ST C+GQAASM ++LLS+G KG R++LP++ I++
Sbjct: 67  YINSPGGVVTSGLAIYDTMNYIKPDVSTICIGQAASMAAVLLSSGAKGKRYSLPSSNIMI 126

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQASDI   A+ I+KIK +LN+I   N G++ +++EK  DRD  M+A EA  
Sbjct: 127 HQPSGGAQGQASDIVIQAEQIIKIKEKLNKILSDNTGQSLKKIEKDTDRDFAMTAEEALK 186

Query: 198 WGVVDKVLMSR 208
           +G++DKV+ S+
Sbjct: 187 YGLIDKVIESK 197


>gi|295105822|emb|CBL03365.1| ATP-dependent Clp protease proteolytic subunit ClpP [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 211

 Score =  272 bits (697), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 108/209 (51%), Positives = 148/209 (70%), Gaps = 3/209 (1%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
            S D    L+P V+EQ+ RGERSYDIYSRLL +R++F+  QI+D++A  + AQLL LE+ 
Sbjct: 1   MSYDTKAALIPYVIEQSPRGERSYDIYSRLLNDRVIFLGEQIDDNVANSVVAQLLHLESA 60

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           +P+K+ISLYINSPGG VTAG+AI DTM FIK  +ST C+G+ ASM ++LLS G KG R  
Sbjct: 61  DPEKDISLYINSPGGSVTAGLAILDTMDFIKCDVSTICLGECASMAAVLLSNGAKGKRMC 120

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPN+ +L+HQPSGG  GQ ++I   A  ++K + RLN+I   N G+T E ++   +RD+ 
Sbjct: 121 LPNSMVLIHQPSGGAQGQQTEIAIVADFMLKTRNRLNKILADNTGQTLETIQADTERDNY 180

Query: 190 MSASEACDWGVVDKVLMSR---IDIEEKS 215
           M+A EA  +G+VD++  SR    D EEK 
Sbjct: 181 MTAEEALAYGLVDRITTSRAAAADTEEKK 209


>gi|84499432|ref|ZP_00997720.1| Protease subunit of ATP-dependent Clp protease [Oceanicola
           batsensis HTCC2597]
 gi|84392576|gb|EAQ04787.1| Protease subunit of ATP-dependent Clp protease [Oceanicola
           batsensis HTCC2597]
          Length = 210

 Score =  272 bits (697), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 125/201 (62%), Positives = 162/201 (80%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E+    LVPMVVEQT+RGER+YDI+SRLLKERI+FV+G + D M++LI AQLL LEAENP
Sbjct: 6   ENYMNNLVPMVVEQTSRGERAYDIFSRLLKERIIFVSGPVHDGMSSLIVAQLLHLEAENP 65

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+IS+YINSPGGVVT+G++IYDTMQ+IKP + T  +GQAASMGSLLL+ G  GMR+ALP
Sbjct: 66  TKDISMYINSPGGVVTSGLSIYDTMQYIKPKVGTLVIGQAASMGSLLLAGGAAGMRYALP 125

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           NA I++HQPSGG+ GQA+DI  HA+   K+K RLN+IYVK+ G+ +E V   L+RD+ M+
Sbjct: 126 NAEIMVHQPSGGYRGQATDIMIHARHTEKLKERLNKIYVKHTGQDFETVVDALERDNFMT 185

Query: 192 ASEACDWGVVDKVLMSRIDIE 212
           A EA DWG++D++  SR   +
Sbjct: 186 AEEAKDWGLIDEIFESRPKAD 206


>gi|304407273|ref|ZP_07388926.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
           curdlanolyticus YK9]
 gi|304343714|gb|EFM09555.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
           curdlanolyticus YK9]
          Length = 195

 Score =  272 bits (696), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 112/192 (58%), Positives = 147/192 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VPMV+EQ NRGER+YDIYSRLLK+RI+F+   + D +A  I AQLLFL A++P+K+I
Sbjct: 3   MNFVPMVIEQNNRGERAYDIYSRLLKDRIIFLGTGVNDIVANSIIAQLLFLAADDPEKDI 62

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG +TAGMAIYDTMQFIKP +ST C+G AASMG+ LL+AG  G R+ALPN+ +
Sbjct: 63  SLYINSPGGSITAGMAIYDTMQFIKPDVSTICVGMAASMGAFLLTAGAIGKRYALPNSEV 122

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDIE  A+ I+K++ +LN I  +   +  E +EK  DRD+ MSA EA
Sbjct: 123 MIHQPLGGAEGQASDIEIRAKRILKMRDKLNGILAERSNQPLERIEKDTDRDYFMSAEEA 182

Query: 196 CDWGVVDKVLMS 207
             +G++DKV+  
Sbjct: 183 RQYGLIDKVIDK 194


>gi|148241165|ref|YP_001226322.1| protease subunit of ATP-dependent Clp protease [Synechococcus sp.
           RCC307]
 gi|147849475|emb|CAK26969.1| Protease subunit of ATP-dependent Clp protease [Synechococcus sp.
           RCC307]
          Length = 207

 Score =  272 bits (696), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 104/189 (55%), Positives = 140/189 (74%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVP VVEQ+ RGER++DIYSRLL+ERI+F+   I+D +A  + AQLL+LEAE+P+KEI 
Sbjct: 17  TLVPTVVEQSGRGERAFDIYSRLLRERIIFLGTGIDDAIADAVVAQLLYLEAEDPEKEIQ 76

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+NSPGG VTAG+AIYDTMQ + P + T C G AASMG+ LLS G KG R ALPNARI+
Sbjct: 77  IYVNSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIM 136

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA DIE  A++I+ +K  LN +   + G+   +V +  DRD+ +S  EA 
Sbjct: 137 IHQPLGGAQGQAVDIEIQAKEILYLKETLNGLMASHTGQDLAKVSEDTDRDYFLSPDEAV 196

Query: 197 DWGVVDKVL 205
            +G++D+V+
Sbjct: 197 AYGLIDRVV 205


>gi|148239550|ref|YP_001224937.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           WH 7803]
 gi|147848089|emb|CAK23640.1| Protease subunit of ATP-dependent Clp protease [Synechococcus sp.
           WH 7803]
          Length = 196

 Score =  272 bits (696), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 98/192 (51%), Positives = 138/192 (71%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+E++ RGER++DIYSRLL+ERI+F+   +    A  I AQLLFLEAE+P+K+I L
Sbjct: 1   MIPIVIEESGRGERAFDIYSRLLRERIIFLGEAVTSESANRIVAQLLFLEAEDPEKDIFL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I+DTMQ IKP + T C+G AASMG+ LL AG KG R +L ++RI++
Sbjct: 61  YINSPGGSVYDGLGIFDTMQHIKPDVQTVCVGLAASMGAFLLCAGAKGKRSSLRHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A +I+ +K RLN+   +   +  E++++  DRD  MS +EA D
Sbjct: 121 HQPLGGARGQASDIRIQADEILFLKNRLNQELSERTSQPLEKIQEDTDRDFFMSPNEAVD 180

Query: 198 WGVVDKVLMSRI 209
           +G++D V+  R 
Sbjct: 181 YGLIDSVIDKRP 192


>gi|163940539|ref|YP_001645423.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           weihenstephanensis KBAB4]
 gi|163862736|gb|ABY43795.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           weihenstephanensis KBAB4]
          Length = 193

 Score =  272 bits (696), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 104/193 (53%), Positives = 141/193 (73%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++P V+EQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ +K+I
Sbjct: 1   MSVIPYVIEQTKLGERSYDIYSRLLKDRIIMIGSEINDQVASSVVAQLLFLEAEDAEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL AG KG RFALPN+ I
Sbjct: 61  FLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLAGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K+K  +N+I  +  G+  E+V    +RD+ M+A EA
Sbjct: 121 MIHQPLGGVKGQATEIEITAKRILKLKHDINKIIAERTGQPVEKVAHDTERDYFMTAEEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD V+  +
Sbjct: 181 KEYGIVDAVIEKK 193


>gi|119357822|ref|YP_912466.1| ATP-dependent Clp protease proteolytic subunit ClpP [Chlorobium
           phaeobacteroides DSM 266]
 gi|166201813|sp|A1BI15|CLPP_CHLPD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|119355171|gb|ABL66042.1| ATP-dependent Clp protease proteolytic subunit ClpP [Chlorobium
           phaeobacteroides DSM 266]
          Length = 227

 Score =  272 bits (696), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 101/200 (50%), Positives = 153/200 (76%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMV+E + RGER++DI+SRLL+ERI+F+   I++H+A LI AQL+FLE+E+P+++I 
Sbjct: 27  SLVPMVIETSGRGERAFDIFSRLLRERIIFLGSGIDEHVAGLIMAQLIFLESEDPERDIY 86

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+NSPGG V+AG+ IYDTMQ+I+P +ST C+G AASMG+ LL++G KG R +LP++RI+
Sbjct: 87  IYVNSPGGSVSAGLGIYDTMQYIRPDVSTVCVGMAASMGAFLLASGTKGKRASLPHSRIM 146

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  GQ SDI   A++I KI+R L EI   + GK  ++V +  +RD  M+A EA 
Sbjct: 147 IHQPSGGAQGQESDIIIQAREIEKIRRLLEEILASHTGKDVQQVREDSERDRWMNAQEAL 206

Query: 197 DWGVVDKVLMSRIDIEEKSK 216
           ++G++D++   R   +++ +
Sbjct: 207 EYGIIDQIFEKRPKPDKEKE 226


>gi|260435297|ref|ZP_05789267.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. WH 8109]
 gi|260413171|gb|EEX06467.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. WH 8109]
          Length = 205

 Score =  272 bits (696), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 98/201 (48%), Positives = 140/201 (69%), Gaps = 2/201 (0%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  D  +  +P+V+E++ RGER++DIYSRLL+ERI+F+   +    A  I AQ+LFLEA
Sbjct: 2   RDPADAQM--IPIVIEESGRGERAFDIYSRLLRERIIFLGEAVTSDSANRIVAQMLFLEA 59

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           E+P+K+I LYINSPGG V  G+ I+DTMQ IKP + T C+G AASMG+ LL AG KG R 
Sbjct: 60  EDPEKDIYLYINSPGGSVYDGLGIFDTMQHIKPDVHTVCVGLAASMGAFLLCAGTKGKRS 119

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +L ++RI++HQP GG  GQASDI   A +I+ +K RLN+      G+  + +++  DRD 
Sbjct: 120 SLQHSRIMIHQPLGGAQGQASDIRIQADEILFLKERLNKELSDRTGQPLDRIQQDTDRDF 179

Query: 189 IMSASEACDWGVVDKVLMSRI 209
            MS +EA ++G++D V+  R 
Sbjct: 180 FMSPTEAVNYGLIDSVIDKRP 200


>gi|260584984|ref|ZP_05852727.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Granulicatella elegans ATCC 700633]
 gi|260157290|gb|EEW92363.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Granulicatella elegans ATCC 700633]
          Length = 197

 Score =  272 bits (696), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 111/197 (56%), Positives = 150/197 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQ++RGER+YDIYSRLLK+RI+ V+G I D MA  I AQLLFL+A++P+K+I
Sbjct: 1   MNLIPTVIEQSSRGERAYDIYSRLLKDRIIMVSGPIHDDMANAIIAQLLFLDAQDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG VTAG+AIYDTM FIK  + T  MG AASMGS LL+AG KG R+ALPNA I
Sbjct: 61  YMYINSPGGSVTAGLAIYDTMNFIKADVQTIAMGLAASMGSFLLTAGTKGKRYALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQP GG  GQA++IE  A+ I+K + RLN I  K  G+  + +EK  DRD+ M+A EA
Sbjct: 121 LIHQPLGGAQGQATEIEIAARQILKTRERLNAILAKQTGQKLKTIEKDTDRDNYMTAQEA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G++D ++ +  D++
Sbjct: 181 LEYGLIDAIMTNSKDLQ 197


>gi|300023469|ref|YP_003756080.1| endopeptidase Clp [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525290|gb|ADJ23759.1| Endopeptidase Clp [Hyphomicrobium denitrificans ATCC 51888]
          Length = 217

 Score =  272 bits (696), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 147/205 (71%), Positives = 177/205 (86%), Gaps = 1/205 (0%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           +D  +       PMVVEQT RGER YD+ SRLLKERI+FVTG +EDHMA  IC QLLFLE
Sbjct: 2   RDPINTVTNTFWPMVVEQTTRGERGYDLPSRLLKERIIFVTGPVEDHMAASICMQLLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           +ENP+KEIS+YINSPGGVVTAGMAIYDTMQF+KPP++T C+GQAASMGSLLL AG K MR
Sbjct: 62  SENPKKEISMYINSPGGVVTAGMAIYDTMQFVKPPVATLCIGQAASMGSLLLCAGAKDMR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           FALPNARI++HQPSGGFSGQASDIERHA+DI+K+KRRLNE YVK+ G++YE +EKTLDRD
Sbjct: 122 FALPNARIMVHQPSGGFSGQASDIERHAEDIIKMKRRLNETYVKHTGQSYEMIEKTLDRD 181

Query: 188 HIMSASEACDWGVVDKVLMSRIDIE 212
           + M+A +A D+G++DKVL SR +++
Sbjct: 182 YFMTADQARDFGIIDKVLESRDEVD 206


>gi|328956747|ref|YP_004374133.1| ATP-dependent Clp protease proteolytic subunit [Carnobacterium sp.
           17-4]
 gi|328673071|gb|AEB29117.1| ATP-dependent Clp protease proteolytic subunit [Carnobacterium sp.
           17-4]
          Length = 197

 Score =  272 bits (696), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 102/192 (53%), Positives = 147/192 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQ++RGER+YDIYSRLLK+RI+ ++G ++D +A  + AQLLFL+A++ +K+I
Sbjct: 1   MNLVPTVIEQSSRGERAYDIYSRLLKDRIIMLSGPVDDDLANAVIAQLLFLDAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG VTAG+AI+DTM FIK  + T  MG AASMGS LL+AG KG R+ALPNA I
Sbjct: 61  YIYINSPGGSVTAGLAIFDTMNFIKADVQTIAMGMAASMGSFLLTAGTKGKRYALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA++IE  A+ I+  + RLN+I     G+  E +++  DRD+ MSA +A
Sbjct: 121 MIHQPSGGSQGQATEIEIAARHILNTRERLNKILSDRTGQPIEVIKRDTDRDNYMSAEDA 180

Query: 196 CDWGVVDKVLMS 207
             +G++D+++ +
Sbjct: 181 KAYGLIDEIMEN 192


>gi|289435727|ref|YP_003465599.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
 gi|289171971|emb|CBH28517.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
          Length = 198

 Score =  272 bits (696), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 106/197 (53%), Positives = 151/197 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT+RGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL+A++P+K+I
Sbjct: 1   MNLIPTVIEQTSRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG ++AGMAIYDTM F+K  + T  MG AASMGS LL+AG  G RFALPNA I
Sbjct: 61  FLYINSPGGSISAGMAIYDTMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+KIK R+N I     G+ YE + +  DRD+ M+A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAARHILKIKERMNTIMADKTGQPYEVIARDTDRDNFMTAQEA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
            D+G++D++++++  ++
Sbjct: 181 KDYGLIDEIIVNKAGLK 197


>gi|116074798|ref|ZP_01472059.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           RS9916]
 gi|116068020|gb|EAU73773.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           RS9916]
          Length = 196

 Score =  272 bits (696), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 99/192 (51%), Positives = 136/192 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+E++ RGER++DIYSRLL+ERIVF+   +    A  I AQLLFLEAE+P+K+I L
Sbjct: 1   MIPIVIEESGRGERAFDIYSRLLRERIVFLGEPVTSESANRIVAQLLFLEAEDPEKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I+DTMQ IKP + T C+G AASMG+ LL AG KG R +L ++RI++
Sbjct: 61  YINSPGGSVYDGLGIFDTMQHIKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLRHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG SGQASDI   A +I+ +K +LN    +  G+  E+++   DRD  MS  EA  
Sbjct: 121 HQPLGGASGQASDIRIQADEILFLKDKLNRELAERSGQPLEKMQVDTDRDFFMSPDEAVT 180

Query: 198 WGVVDKVLMSRI 209
           +G++D V+  R 
Sbjct: 181 YGLIDTVIDRRP 192


>gi|289804604|ref|ZP_06535233.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 228

 Score =  272 bits (696), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 123/194 (63%), Positives = 163/194 (84%), Gaps = 2/194 (1%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D+    + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 37  MSYSG--ERDNLAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIV 94

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 95  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 154

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+   + G++ E++
Sbjct: 155 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQI 214

Query: 181 EKTLDRDHIMSASE 194
           E+  +RD  +SA E
Sbjct: 215 ERDTERDRFLSAPE 228


>gi|170086161|ref|XP_001874304.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164651856|gb|EDR16096.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 243

 Score =  272 bits (696), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 121/212 (57%), Positives = 155/212 (73%)

Query: 2   SFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICA 61
            F    +K S      LVP+V+EQT RGERSYDI+SRLL+ER++ + G I D  +TLI A
Sbjct: 28  YFSQIQEKWSSPPSANLVPIVIEQTGRGERSYDIFSRLLRERVIMLHGTIRDSDSTLIVA 87

Query: 62  QLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSA 121
           QLLFLEAE+  K I LYINSPGG VTAG+AIYDTMQ++  PI T+ +G AASMGSLLL+A
Sbjct: 88  QLLFLEAEDSTKPIHLYINSPGGSVTAGLAIYDTMQYVSSPIHTYSLGLAASMGSLLLAA 147

Query: 122 GEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVE 181
           GEKG R  LPNA I++HQPSGG SGQASDI  HA++I++I++ L  IY ++CGK  E   
Sbjct: 148 GEKGKRHCLPNASIMIHQPSGGASGQASDIAIHAKEILRIRQVLTGIYQRHCGKDGESQA 207

Query: 182 KTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
           + L+RD+ M+A EA ++G+VD +L  R   E 
Sbjct: 208 EALERDYYMTAQEAMEFGIVDGILEKRPSTEP 239


>gi|32266066|ref|NP_860098.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter
           hepaticus ATCC 51449]
 gi|60389734|sp|Q7VIN7|CLPP_HELHP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|32262115|gb|AAP77164.1| endopeptidase ClpP [Helicobacter hepaticus ATCC 51449]
          Length = 196

 Score =  272 bits (696), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 107/193 (55%), Positives = 148/193 (76%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
               +P V+E+T RGERSYDIYSRLLK+RI+ ++G+I DH+A+ I AQLLFLEAE+P+K+
Sbjct: 1   MSSYIPYVIERTGRGERSYDIYSRLLKDRIILLSGEINDHIASSIVAQLLFLEAEDPEKD 60

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I+ YINSPGGV+T+  +IYDTM +I   IST C+GQAAS G+ LLS+G KG RF+LPN+R
Sbjct: 61  INFYINSPGGVITSAFSIYDTMNYIHSDISTICIGQAASAGAFLLSSGTKGKRFSLPNSR 120

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQP GG  GQA+DIE  A++I+++K+ LNEI   N G+  E++ +  +RD  MS  E
Sbjct: 121 IMIHQPLGGAQGQATDIEIQAREILRLKKILNEIMAHNTGQKIEKITQDTERDFFMSGEE 180

Query: 195 ACDWGVVDKVLMS 207
           A  +G+VD++L  
Sbjct: 181 AKKYGLVDEILTK 193


>gi|293349601|ref|XP_001055676.2| PREDICTED: caseinolytic peptidase, ATP-dependent, proteolytic
           subunit-like [Rattus norvegicus]
 gi|293362033|ref|XP_217313.4| PREDICTED: caseinolytic peptidase, ATP-dependent, proteolytic
           subunit-like [Rattus norvegicus]
 gi|149028159|gb|EDL83597.1| similar to Putative ATP-dependent Clp protease proteolytic subunit,
           mitochondrial precursor (Endopeptidase Clp) [Rattus
           norvegicus]
          Length = 333

 Score =  272 bits (695), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 115/191 (60%), Positives = 155/191 (81%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            L+P+VVEQT RGER+YDIYSRLL+ERIV V G I+D +A+L+ AQLLFL++E+ +K I 
Sbjct: 114 PLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIH 173

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGGVVTAG+AIYDTMQ+I  PI T+C+GQAASMGSLLL+AG  GMR +LPN+RI+
Sbjct: 174 MYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIM 233

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  GQA+DI   A++I+K+KR+L  IY K+  ++ + +E  ++RD  MS  EA 
Sbjct: 234 IHQPSGGARGQATDIAIQAEEIMKLKRQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQ 293

Query: 197 DWGVVDKVLMS 207
           ++G++DKVL+ 
Sbjct: 294 EFGILDKVLVH 304


>gi|113475211|ref|YP_721272.1| ATP-dependent Clp protease proteolytic subunit ClpP [Trichodesmium
           erythraeum IMS101]
 gi|110166259|gb|ABG50799.1| ATP-dependent Clp protease proteolytic subunit ClpP [Trichodesmium
           erythraeum IMS101]
          Length = 203

 Score =  272 bits (695), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 96/187 (51%), Positives = 146/187 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+EQ+ RGER++DIYSRLL++RI+++   I+  +A LI  QLL+L++E+P+K+I L
Sbjct: 1   MIPTVIEQSGRGERAFDIYSRLLRDRIIYLGEAIDSELANLIVGQLLYLDSEDPEKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AGM IYDTM+ ++P + T CMG AASMG+ LLS G KG R +LP++RI++
Sbjct: 61  YINSPGGSVSAGMGIYDTMRHVRPDVCTICMGIAASMGAFLLSGGTKGKRMSLPHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+ +K+ LNE   ++ G++ E++ +  +RD  MSA+EA +
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYLKKYLNECLAEHTGQSIEKITEDTERDFFMSATEAME 180

Query: 198 WGVVDKV 204
           +G++D+V
Sbjct: 181 YGIIDQV 187


>gi|330994049|ref|ZP_08317979.1| ATP-dependent Clp protease proteolytic subunit 1 [Gluconacetobacter
           sp. SXCC-1]
 gi|329758995|gb|EGG75509.1| ATP-dependent Clp protease proteolytic subunit 1 [Gluconacetobacter
           sp. SXCC-1]
          Length = 213

 Score =  272 bits (695), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 127/206 (61%), Positives = 168/206 (81%), Gaps = 1/206 (0%)

Query: 5   GCAKKDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQL 63
               +D  ++F   LVPMVVEQT+RGER++DIYSRLL+ERI+F+TG + D +A ++ AQL
Sbjct: 2   AMRDRDPVEIFNNALVPMVVEQTSRGERAFDIYSRLLQERIIFLTGPVYDQVAAVVSAQL 61

Query: 64  LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           L+LE+ NP KEIS YINSPGGVV+AG+AIYDTMQ+I+ P+ST C+GQAASMGSLLL+ GE
Sbjct: 62  LYLESVNPTKEISFYINSPGGVVSAGLAIYDTMQYIRSPVSTVCIGQAASMGSLLLAGGE 121

Query: 124 KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
           KG RFALPN+R+++HQPSGG  GQASDIE  AQ+I+ I++RLNEIY ++ G+T EE+E+ 
Sbjct: 122 KGRRFALPNSRVMVHQPSGGAQGQASDIEIQAQEILTIRKRLNEIYNEHTGRTLEEIERK 181

Query: 184 LDRDHIMSASEACDWGVVDKVLMSRI 209
           L+RD  MSA EA  +G+VD+V+   +
Sbjct: 182 LERDSYMSAEEAQAFGIVDEVVRRNV 207


>gi|85716433|ref|ZP_01047405.1| peptidase S14, ClpP [Nitrobacter sp. Nb-311A]
 gi|85696790|gb|EAQ34676.1| peptidase S14, ClpP [Nitrobacter sp. Nb-311A]
          Length = 212

 Score =  272 bits (695), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 139/208 (66%), Positives = 175/208 (84%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  + ++ LVPMVVEQTNRGER+YDI+SRLLKERI+FVTG +ED M+ L+ AQLLFLEA
Sbjct: 2   RDPVETYMNLVPMVVEQTNRGERAYDIFSRLLKERIIFVTGPVEDTMSMLVVAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEIS+YINSPGGVVT+G+AIYDTMQFI+PP++T C GQAASMGSLLL+AGEK MR 
Sbjct: 62  ENPKKEISMYINSPGGVVTSGLAIYDTMQFIRPPVATLCTGQAASMGSLLLAAGEKDMRH 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           ALPNARI++HQPSGGF GQA+DI  HAQ+I+ +K+RLNEIYVK+ G+TY+ +E  L+RD 
Sbjct: 122 ALPNARIMVHQPSGGFQGQATDIMLHAQEILSLKKRLNEIYVKHTGQTYQAIEDALERDK 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIEEKSK 216
            ++A  A D+G+VDKV+  R +     K
Sbjct: 182 FLTADMARDFGIVDKVIDKRAEDPAAPK 209


>gi|162148815|ref|YP_001603276.1| ATP-dependent Clp protease proteolytic subunit [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209545437|ref|YP_002277666.1| ATP-dependent Clp protease proteolytic subunit [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787392|emb|CAP56987.1| ATP-dependent Clp protease proteolytic subunit 1 (Endopeptidase Clp
           1) [Gluconacetobacter diazotrophicus PAl 5]
 gi|209533114|gb|ACI53051.1| Endopeptidase Clp [Gluconacetobacter diazotrophicus PAl 5]
          Length = 212

 Score =  272 bits (695), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 126/203 (62%), Positives = 167/203 (82%), Gaps = 1/203 (0%)

Query: 6   CAKKDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLL 64
              +D  ++F   LVPMVVEQT+RGER++DIYSRLL+ERI+F+TG + D +A ++ AQLL
Sbjct: 1   MRDRDPVEIFSSALVPMVVEQTSRGERAFDIYSRLLQERIIFLTGPVYDQVAAVVSAQLL 60

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           +LE+ NP KEIS YINSPGGVV+AG+AIYDTMQ+I+ P+ST C+GQAASMGSLLL+ GEK
Sbjct: 61  YLESVNPTKEISFYINSPGGVVSAGLAIYDTMQYIRSPVSTVCIGQAASMGSLLLAGGEK 120

Query: 125 GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
           G RFALPNAR+++HQPSGG  GQASDIE  A++I+ I++RLNEIY  + G+T E++E+ L
Sbjct: 121 GRRFALPNARVMVHQPSGGAQGQASDIEIQAREILTIRQRLNEIYETHTGQTLEDIERRL 180

Query: 185 DRDHIMSASEACDWGVVDKVLMS 207
           +RD  MSA EA  +G+VD+V+ +
Sbjct: 181 ERDSYMSAEEAQAFGIVDEVVRN 203


>gi|87302740|ref|ZP_01085551.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           WH 5701]
 gi|87282623|gb|EAQ74581.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           WH 5701]
          Length = 196

 Score =  272 bits (695), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 96/192 (50%), Positives = 135/192 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+E + RGER++DIYSRLL+ERI+F+   +    A  + AQLLFLEAE+P+K+I L
Sbjct: 1   MIPIVIEDSGRGERAFDIYSRLLRERIIFLGEPVTAESANRVVAQLLFLEAEDPEKDIFL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I+DTMQ IKP + T C+G AASMG+ LL+AG KG R +L ++RI++
Sbjct: 61  YINSPGGSVYDGLGIFDTMQHIKPDVQTVCVGLAASMGAFLLTAGAKGKRSSLHHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A +I+ +K +LN       G+  + ++   DRD  MS +EA  
Sbjct: 121 HQPLGGARGQASDIRIQADEILYLKDKLNRELSDRTGQPLDRIQIDTDRDFFMSPAEAVS 180

Query: 198 WGVVDKVLMSRI 209
           +G++DKV+  R 
Sbjct: 181 YGLIDKVIEKRP 192


>gi|241696180|ref|XP_002411835.1| ATP-dependent Clp protease, proteolytic subunit, putative [Ixodes
           scapularis]
 gi|215504758|gb|EEC14252.1| ATP-dependent Clp protease, proteolytic subunit, putative [Ixodes
           scapularis]
          Length = 235

 Score =  272 bits (695), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 110/198 (55%), Positives = 151/198 (76%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
            S      L+P+V+EQT RGER+YDIYSRLLKERIV V G I D +++L+ AQLLFL++E
Sbjct: 27  TSSRRLNPLIPIVIEQTGRGERAYDIYSRLLKERIVCVMGPITDELSSLVVAQLLFLQSE 86

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           + +K + +YINSPGG VTAG+ IYDTMQ+I PPIST+C+GQA S GSLLL AG  GMR +
Sbjct: 87  SNKKPVHMYINSPGGSVTAGLGIYDTMQYIMPPISTWCIGQACSAGSLLLCAGTAGMRHS 146

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LP++RI++HQPSG  SGQA+DI+ HA++I+ +KR +N +Y K+  +  E +E  ++RD  
Sbjct: 147 LPHSRIMIHQPSGQASGQATDIQIHAEEILHLKRVINGMYAKHTKQPLETIESAMERDRF 206

Query: 190 MSASEACDWGVVDKVLMS 207
           MSA +A ++G++D VL  
Sbjct: 207 MSAEQAKEFGIIDVVLEH 224


>gi|260821306|ref|XP_002605974.1| hypothetical protein BRAFLDRAFT_92198 [Branchiostoma floridae]
 gi|229291311|gb|EEN61984.1| hypothetical protein BRAFLDRAFT_92198 [Branchiostoma floridae]
          Length = 236

 Score =  272 bits (695), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 109/191 (57%), Positives = 151/191 (79%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            +VP+VVEQT RGER+YDIYSRLLKERI+ V G I D M++L+ AQLLFL++E+ +K + 
Sbjct: 33  PMVPIVVEQTGRGERAYDIYSRLLKERIICVMGPISDEMSSLVVAQLLFLQSESNKKPVH 92

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VTAG+ IYDTMQ+I PP++T+C+GQA SM SLLL+AG  G R +LPN+RI+
Sbjct: 93  MYINSPGGSVTAGLGIYDTMQYILPPVNTWCVGQACSMASLLLAAGTPGCRHSLPNSRIM 152

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP G  +GQASDI   A++I K+K+++N++YVK+ G+    +E+++DRD  MS  EA 
Sbjct: 153 VHQPHGQAAGQASDILIQAEEISKLKQQMNKLYVKHTGQELSVIEESMDRDRFMSPVEAE 212

Query: 197 DWGVVDKVLMS 207
            +G++DKVL  
Sbjct: 213 AFGLIDKVLEH 223


>gi|154249786|ref|YP_001410611.1| ATP-dependent Clp protease proteolytic subunit [Fervidobacterium
           nodosum Rt17-B1]
 gi|154153722|gb|ABS60954.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Fervidobacterium nodosum Rt17-B1]
          Length = 206

 Score =  272 bits (695), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 113/198 (57%), Positives = 155/198 (78%)

Query: 8   KKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
            ++ + +    VP+V+E T R ER+YDIYSRLLK+RI+F+   I+DH+A L+ AQLLFLE
Sbjct: 4   DRELKKILDQYVPIVIESTGRYERAYDIYSRLLKDRIIFLGSAIDDHVANLVVAQLLFLE 63

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AENP K+I LYINSPGG+VTAG+AIYDTMQ++K  ++T C+GQAASMG++LL+AG KG R
Sbjct: 64  AENPDKDIQLYINSPGGLVTAGLAIYDTMQYVKCDVATICVGQAASMGAVLLAAGAKGKR 123

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           FALPN+RI++HQP GG  G A D+E   +++++IKR +NEI  K+ G+  E +EK  DRD
Sbjct: 124 FALPNSRIMIHQPLGGAEGSAKDVEILTKELLRIKRIINEILSKHTGQDIERIEKDTDRD 183

Query: 188 HIMSASEACDWGVVDKVL 205
             MSA EA ++G++DKV+
Sbjct: 184 FFMSAQEAMEYGIIDKVI 201


>gi|157273309|gb|ABV27208.1| ATP-dependent Clp protease proteolytic subunit ClpP [Candidatus
           Chloracidobacterium thermophilum]
          Length = 199

 Score =  272 bits (695), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 117/196 (59%), Positives = 160/196 (81%)

Query: 14  VFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQK 73
               L+PMV+EQT RGER+YDIYSRLLK+ I+F++  I+D +A+L+ AQLLFLE+E+P++
Sbjct: 4   PTAALIPMVIEQTGRGERAYDIYSRLLKDNIIFISTPIDDTVASLVVAQLLFLESEDPER 63

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +IS+YINSPGG VTAGMAIYDTMQF+KP I TFC+GQ ASMG+LLL+AG KG R+ALP++
Sbjct: 64  DISIYINSPGGSVTAGMAIYDTMQFVKPDIVTFCVGQCASMGALLLAAGTKGKRYALPHS 123

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           RIL+HQPSGG  GQA+DI   A++I +I+   + I  K+ GK +E +E  ++RD IMSA+
Sbjct: 124 RILIHQPSGGAQGQATDILIQAEEIKRIRELTSTILAKHTGKPFEVIEADVERDRIMSAT 183

Query: 194 EACDWGVVDKVLMSRI 209
           +A ++G+VD+VL SR+
Sbjct: 184 QAMEYGIVDQVLTSRV 199


>gi|78212970|ref|YP_381749.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           CC9605]
 gi|78197429|gb|ABB35194.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. CC9605]
          Length = 218

 Score =  272 bits (695), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 97/198 (48%), Positives = 139/198 (70%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           +     ++P+V+E++ RGER++DIYSRLL+ERI+F+   +    A  I AQ+LFLEAE+P
Sbjct: 16  DPTVAQMIPIVIEESGRGERAFDIYSRLLRERIIFLGEAVTSDSANRIVAQMLFLEAEDP 75

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+I LYINSPGG V  G+ I+DTMQ IKP + T C+G AASMG+ LL AG KG R +L 
Sbjct: 76  EKDIYLYINSPGGSVYDGLGIFDTMQHIKPDVHTVCVGLAASMGAFLLCAGTKGKRSSLQ 135

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           ++RI++HQP GG  GQASDI   A +I+ +K RLN+      G+T + +++  DRD  MS
Sbjct: 136 HSRIMIHQPLGGAQGQASDIRIQADEILFLKERLNKELSDRTGQTLDRIQQDTDRDFFMS 195

Query: 192 ASEACDWGVVDKVLMSRI 209
            +EA ++G++D V+  R 
Sbjct: 196 PTEAMNYGLIDSVIDKRP 213


>gi|56551844|ref|YP_162683.1| ATP-dependent Clp protease proteolytic subunit [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|241761834|ref|ZP_04759920.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Zymomonas
           mobilis subsp. mobilis ATCC 10988]
 gi|260752594|ref|YP_003225487.1| ATP-dependent Clp protease proteolytic subunit [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
 gi|67460187|sp|Q5NNY8|CLPP_ZYMMO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|56543418|gb|AAV89572.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Zymomonas
           mobilis subsp. mobilis ZM4]
 gi|241373748|gb|EER63308.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Zymomonas
           mobilis subsp. mobilis ATCC 10988]
 gi|258551957|gb|ACV74903.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Zymomonas
           mobilis subsp. mobilis NCIMB 11163]
          Length = 210

 Score =  272 bits (695), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 127/207 (61%), Positives = 167/207 (80%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           D  D+   L+PMVVEQ+NRGERS+DIYSRLL+ERI+FVTGQ+EDHMA++ICAQLLFLEAE
Sbjct: 4   DHADIVNALIPMVVEQSNRGERSFDIYSRLLRERIIFVTGQVEDHMASVICAQLLFLEAE 63

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP+K+I LYINSPGGVVTAG+AI+DTMQ+I+P + T C+GQAASMGS LL+AGE GMR A
Sbjct: 64  NPKKDIFLYINSPGGVVTAGLAIHDTMQYIRPKVGTLCIGQAASMGSFLLAAGEPGMRVA 123

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
             N+RI++HQPSGG  G A+DIE  A++I+++++RLN +Y K   +  EE+EK +DRD+ 
Sbjct: 124 TTNSRIMIHQPSGGAQGMAADIEIQAREILRMRKRLNALYAKYTNQPIEEIEKAMDRDNF 183

Query: 190 MSASEACDWGVVDKVLMSRIDIEEKSK 216
           + A EA  +G++DKV   R    E+ +
Sbjct: 184 LEADEAKAFGLIDKVFDKRPVASEEKE 210


>gi|291277236|ref|YP_003517008.1| ATP-dependent clp protease proteolytic subunit [Helicobacter
           mustelae 12198]
 gi|290964430|emb|CBG40280.1| ATP-dependent clp protease proteolytic subunit [Helicobacter
           mustelae 12198]
          Length = 195

 Score =  272 bits (695), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 108/192 (56%), Positives = 149/192 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P V+E+T +GERSYDIYSRLLK+RIV ++G+I D +A+ I AQLLFLEAE+ QK+I
Sbjct: 1   MNYIPYVIERTGKGERSYDIYSRLLKDRIVLLSGEINDMVASSIVAQLLFLEAEDAQKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG VT+  +IYDTM +I+P ++T C+GQAAS G+LLLS+G KG R++LPN+RI
Sbjct: 61  YFYINSPGGAVTSAFSIYDTMHYIRPDVATICVGQAASAGALLLSSGAKGKRYSLPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DIE  A +I+++K+ LNEI   N G++ ++V +  +RD  MSA EA
Sbjct: 121 MIHQPLGGAQGQATDIEIQANEILRLKKILNEILASNTGQSLKKVSQDTERDFFMSAMEA 180

Query: 196 CDWGVVDKVLMS 207
             +G+VDKVL  
Sbjct: 181 QKYGLVDKVLEK 192


>gi|320164411|gb|EFW41310.1| ATP-dependent Clp protease proteolytic subunit [Capsaspora
           owczarzaki ATCC 30864]
          Length = 257

 Score =  272 bits (695), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 108/205 (52%), Positives = 151/205 (73%)

Query: 4   EGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQL 63
                  S  V  G++P VVE T + ER +D++SRLL+ERI+ + G I+D  A++I  QL
Sbjct: 47  SPFYSYASPTVGAGVIPTVVENTGKSERWFDLFSRLLRERIICLMGPIDDSTASVIVGQL 106

Query: 64  LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           LFLE +NP K I +YINSPGGVVTAGMAIYDTMQ+++ P+ST CMGQAASMGSL+L+AG 
Sbjct: 107 LFLEGDNPLKPIHMYINSPGGVVTAGMAIYDTMQYVQSPVSTICMGQAASMGSLILAAGA 166

Query: 124 KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
           KG RF LP+AR+++HQP GG  GQASDI   A++I+K++  LN IYV++ G+  + +E  
Sbjct: 167 KGQRFILPHARVMIHQPLGGAQGQASDIAIQAREILKMREMLNRIYVEHTGQPLKRIEDA 226

Query: 184 LDRDHIMSASEACDWGVVDKVLMSR 208
            +RD+ M+  EA ++G++D+V+  R
Sbjct: 227 TERDYFMNPEEAKEFGIIDQVIQKR 251


>gi|229828304|ref|ZP_04454373.1| hypothetical protein GCWU000342_00362 [Shuttleworthia satelles DSM
           14600]
 gi|229792898|gb|EEP29012.1| hypothetical protein GCWU000342_00362 [Shuttleworthia satelles DSM
           14600]
          Length = 190

 Score =  272 bits (695), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 113/190 (59%), Positives = 149/190 (78%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+EQ +RGERSYDIYSRLLK+RI+F+   + +  A+LI AQLLFLE+E+P K+I LY
Sbjct: 1   MPYVIEQNSRGERSYDIYSRLLKDRIIFLGEDVNETTASLIVAQLLFLESEDPNKDIHLY 60

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGVVT GMAIYDTM +IKP +ST C+G AASMG+ LL+ G KG R+ALPNA I++H
Sbjct: 61  INSPGGVVTCGMAIYDTMNYIKPDVSTICIGMAASMGAFLLAGGAKGKRYALPNAEIMIH 120

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  GQA++IE  A+ I+K KR++N+I   N GKTYE+V    +RDH + A EA ++
Sbjct: 121 QPSGGAKGQATEIEIAAESILKTKRKMNQILADNTGKTYEQVAADTERDHYLDAKEALEY 180

Query: 199 GVVDKVLMSR 208
           G+VD+++  R
Sbjct: 181 GIVDQIIDHR 190


>gi|255647414|gb|ACU24172.1| unknown [Glycine max]
          Length = 238

 Score =  272 bits (695), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 110/193 (56%), Positives = 152/193 (78%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            L+PMV+E ++RGER+YDI+SRLLKERI+ + G I D  A ++ AQLLFLE+EN  K I+
Sbjct: 28  SLIPMVIEHSSRGERAYDIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENSSKPIN 87

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+NSPGG VTAG+AIYDTMQ+I+ P++T CMGQAASMGSLLL+AG KG R +LPNA I+
Sbjct: 88  MYLNSPGGAVTAGLAIYDTMQYIRSPVNTICMGQAASMGSLLLAAGAKGERRSLPNATIM 147

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG+SGQA DI  H + IV++   LNE+Y K+ G++ E ++  +DRD+ M+  EA 
Sbjct: 148 IHQPSGGYSGQAKDIAIHTKHIVRVWDSLNELYAKHTGQSVEVIQTNMDRDNFMTPKEAK 207

Query: 197 DWGVVDKVLMSRI 209
           ++G++D+V+  R 
Sbjct: 208 EFGLIDEVIDQRP 220


>gi|119510658|ref|ZP_01629787.1| Peptidase S14, ClpP [Nodularia spumigena CCY9414]
 gi|119464709|gb|EAW45617.1| Peptidase S14, ClpP [Nodularia spumigena CCY9414]
          Length = 210

 Score =  271 bits (694), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 105/196 (53%), Positives = 146/196 (74%), Gaps = 1/196 (0%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            +VPMVVEQ+  GER++DIYSRLL+ERI+F+   I+D +A  I AQLLFL+AE+ +K+I 
Sbjct: 6   NIVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPIDDTVANSIVAQLLFLDAEDSEKDIQ 65

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG V AGMAIYDTMQ I+P + T C G AASMG+ LL+AG  G R +LP++RI+
Sbjct: 66  IYINSPGGSVYAGMAIYDTMQQIRPDVVTICFGLAASMGAFLLAAGSAGKRMSLPDSRIM 125

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA DIE  A++I+ +K +LN++   + G+  E +E   +RD  MSA EA 
Sbjct: 126 IHQPLGGAQGQAIDIEIQAREILYVKAKLNQLLGHHTGQPLERLEADTERDFFMSAEEAK 185

Query: 197 DWGVVDKVLMSRIDIE 212
           ++G++D+V+ SR +I 
Sbjct: 186 NYGLIDQVI-SRQNIP 200


>gi|78186273|ref|YP_374316.1| peptidase S14, ClpP [Chlorobium luteolum DSM 273]
 gi|115311788|sp|Q3B5V8|CLPP_PELLD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|78166175|gb|ABB23273.1| ATP-dependent Clp protease proteolytic subunit ClpP [Chlorobium
           luteolum DSM 273]
          Length = 225

 Score =  271 bits (694), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 106/213 (49%), Positives = 158/213 (74%), Gaps = 3/213 (1%)

Query: 3   FEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQ 62
           + G  ++  ++    LVPMV+E + RGER++DI+SRLL+ERI+F+   I++H+A LI AQ
Sbjct: 16  YSGAIEQGIQN---SLVPMVIETSGRGERAFDIFSRLLRERIIFLGSGIDEHVAGLIMAQ 72

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           L+FLE+E+P+++I +Y+NSPGG V+AG+ IYDTMQ+I+P +ST C+G AASMG+ LL++G
Sbjct: 73  LIFLESEDPERDIYIYVNSPGGSVSAGLGIYDTMQYIRPDVSTVCVGMAASMGAFLLASG 132

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
            KG R +LP++RI++HQPSGG  GQ SDI   A++I KI+R L EI   + GK  ++V +
Sbjct: 133 AKGKRASLPHSRIMIHQPSGGAQGQESDIIIQAREIEKIRRLLEEILASHTGKDVQQVRE 192

Query: 183 TLDRDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
             +RD  M+A EA D+G++D+V   R   E+K 
Sbjct: 193 DSERDRWMNAEEALDYGIIDQVFAKRPAPEKKD 225


>gi|307637483|gb|ADN79933.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter pylori
           908]
          Length = 195

 Score =  271 bits (694), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 112/195 (57%), Positives = 152/195 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +G +P V+E T RGERSYDIYSRLLK+RIV ++G+I D +A+ I AQLLFLEAE+P+K+I
Sbjct: 1   MGYIPYVIENTERGERSYDIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+T+G++IYDTM FI+P +ST C+GQAASMG+ LLS G KG RF+LP++RI
Sbjct: 61  GLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDIE  + +I+++K  +N I  +N G++ E++ K  DRD  MSA EA
Sbjct: 121 MIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEA 180

Query: 196 CDWGVVDKVLMSRID 210
            ++G+  KVL   + 
Sbjct: 181 KEYGLFYKVLQKNVK 195


>gi|85373054|ref|YP_457116.1| ATP-dependent Clp protease proteolytic subunit [Erythrobacter
           litoralis HTCC2594]
 gi|84786137|gb|ABC62319.1| ATP-dependent Clp protease [Erythrobacter litoralis HTCC2594]
          Length = 234

 Score =  271 bits (694), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 136/214 (63%), Positives = 171/214 (79%), Gaps = 1/214 (0%)

Query: 4   EGCAKKDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQ 62
            G   + + D   G LVP+VVEQT+RGERS+DI+SRLL+ERIVFVTGQ+ED MA+LI AQ
Sbjct: 12  HGTQGQFTRDPLTGALVPVVVEQTSRGERSFDIFSRLLRERIVFVTGQVEDGMASLITAQ 71

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           LLFLE+ENP K IS+YINSPGGVVTAGMAI+DTMQ+IKP +ST CMGQAASMGS LL+AG
Sbjct: 72  LLFLESENPSKPISMYINSPGGVVTAGMAIHDTMQYIKPKVSTVCMGQAASMGSFLLAAG 131

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
           E GMR ALPNARI++HQPSGG  G ASDIE  A++I++I++R+N++YVK  G+   ++EK
Sbjct: 132 EPGMRVALPNARIMVHQPSGGARGMASDIEIQAREILRIRKRMNDLYVKYTGQKLADIEK 191

Query: 183 TLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
            +DRD  + A EA  +G+VDKV  +R + E   K
Sbjct: 192 AMDRDTFLEAEEAMKFGLVDKVFETRPENEGGDK 225


>gi|284044102|ref|YP_003394442.1| ATP-dependent Clp protease proteolytic subunit ClpP [Conexibacter
           woesei DSM 14684]
 gi|283948323|gb|ADB51067.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Conexibacter
           woesei DSM 14684]
          Length = 194

 Score =  271 bits (694), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 115/193 (59%), Positives = 151/193 (78%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
              LVPMVVEQT+RGER++DIYSRLL ERI+F+   ++D +A LI AQLL LE+E+P K+
Sbjct: 1   MSPLVPMVVEQTSRGERAFDIYSRLLNERIIFLGTPVDDQIANLIVAQLLHLESEDPDKD 60

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           IS+YINSPGG V AG+AIYDTMQFIKP + T C+G A SMG+LLLS G +G R ALPNA+
Sbjct: 61  ISIYINSPGGSVYAGLAIYDTMQFIKPDVQTICVGIAMSMGALLLSGGARGKRMALPNAK 120

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           IL+HQ S  F GQA+DIE HA++I+ I+RRL+EI   + GK  +EV+K  +RD+ MS+ E
Sbjct: 121 ILIHQVSSSFQGQATDIEIHAREIIDIRRRLDEIIALHSGKPVDEVKKDTERDYFMSSEE 180

Query: 195 ACDWGVVDKVLMS 207
           A D+G++D+V+  
Sbjct: 181 AKDYGIIDRVIAK 193


>gi|297566268|ref|YP_003685240.1| endopeptidase Clp [Meiothermus silvanus DSM 9946]
 gi|296850717|gb|ADH63732.1| Endopeptidase Clp [Meiothermus silvanus DSM 9946]
          Length = 196

 Score =  271 bits (694), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 105/195 (53%), Positives = 145/195 (74%), Gaps = 2/195 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP V+EQT RGER YDIYSRLLK+RI+F+   I+  +A  I AQ+LFL+A+N Q++I L
Sbjct: 2   VVPYVIEQTARGERVYDIYSRLLKDRIIFLGTPIDAAVANTIVAQMLFLDAQNSQQDIRL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YIN PGG VTAG+AIYDTMQF++ P+ST C+G AAS G++LL+AG  G R+ALP+A I++
Sbjct: 62  YINCPGGEVTAGLAIYDTMQFVRSPVSTICVGMAASFGAVLLAAGAPGKRYALPHANIMI 121

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP   GG  GQ SDI    +++ K KR LNEI  K+ G+  E+VE+  DRD+ MSA +A
Sbjct: 122 HQPWVSGGLGGQVSDIMIRVEELAKNKRLLNEILAKHTGQRVEKVERDTDRDYFMSAPQA 181

Query: 196 CDWGVVDKVLMSRID 210
            ++G++D+V+    +
Sbjct: 182 KEYGLIDQVVTHEAE 196


>gi|49078976|gb|AAT49840.1| PA1801 [synthetic construct]
          Length = 214

 Score =  271 bits (694), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 121/192 (63%), Positives = 154/192 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMVVEQ+ RGER+YDIYSRLLKERI+F+ GQ+ED+MA L+ AQ LFLEAENP+K+I 
Sbjct: 18  GLVPMVVEQSARGERAYDIYSRLLKERIIFLVGQVEDYMANLVVAQWLFLEAENPEKDIH 77

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+LLL+ G  G R+ LP++R++
Sbjct: 78  LYINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGALLLAGGAAGKRYCLPHSRMM 137

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+ IK RLN+I   + G+  + + +  DRD  MS  EA 
Sbjct: 138 IHQPLGGFQGQASDIEIHAKEILFIKERLNQILAHHTGQPLDVIARDTDRDRFMSGDEAV 197

Query: 197 DWGVVDKVLMSR 208
            +G++DKV+  R
Sbjct: 198 KYGLIDKVMTQR 209


>gi|229586800|ref|YP_002845301.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia africae
           ESF-5]
 gi|228021850|gb|ACP53558.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia africae
           ESF-5]
          Length = 216

 Score =  271 bits (694), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 127/208 (61%), Positives = 167/208 (80%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           M+      +  E + +  VP+V+E T+RGER+YDIYSRLLKERI+FV   +EDHMA LI 
Sbjct: 1   MTKNYLINQFQEKILMSYVPIVIEPTSRGERAYDIYSRLLKERIIFVCSTVEDHMANLIV 60

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLEAENP+K+I +YINSPGGVVTAG+AIYDTMQ+IKP ++T C+GQA SMGSLLL 
Sbjct: 61  AQLLFLEAENPKKDIYMYINSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSLLLC 120

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
            GEKGMR++LP++RI++HQPSGG+ GQA+DIE HAQ+ +KIKR LNE+Y K+  +  + +
Sbjct: 121 GGEKGMRYSLPHSRIMIHQPSGGYKGQATDIEIHAQETLKIKRLLNELYSKHTEQELKHI 180

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           EK+++RD+ MS  EA  +G+VD +L SR
Sbjct: 181 EKSMERDNFMSPEEAKKFGLVDNILSSR 208


>gi|315283588|ref|ZP_07871740.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           marthii FSL S4-120]
 gi|313612769|gb|EFR86759.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           marthii FSL S4-120]
          Length = 198

 Score =  271 bits (694), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 106/197 (53%), Positives = 151/197 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT+RGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL+A++P+K+I
Sbjct: 1   MNLIPTVIEQTSRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG ++AGMAIYDTM F+K  + T  MG AASMGS LL+AG  G RFALPNA I
Sbjct: 61  FLYINSPGGSISAGMAIYDTMNFVKADVQTIGMGMAASMGSFLLTAGASGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+KIK R+N I  +  G+ YE + +  DRD+ M+A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAARHILKIKERMNTIMAEKTGQPYEVIARDTDRDNFMTAQEA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
            D+G++D +++++  ++
Sbjct: 181 KDYGLIDDIIVNKSGLK 197


>gi|298243590|ref|ZP_06967397.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ktedonobacter
           racemifer DSM 44963]
 gi|297556644|gb|EFH90508.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ktedonobacter
           racemifer DSM 44963]
          Length = 218

 Score =  271 bits (694), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 103/189 (54%), Positives = 150/189 (79%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G++P VVE T RGERS+D+YSRLLKERI+FV   I+D +A  + AQLL+L++E+  K+I 
Sbjct: 24  GIIPAVVESTPRGERSWDLYSRLLKERIIFVGTPIDDQVANSVVAQLLYLQSEDATKDIQ 83

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGGV+ AG+AIYDTMQ+++P +STFCMG A SMG+++L+AG+KG R+ LPN+ +L
Sbjct: 84  MYINSPGGVIYAGLAIYDTMQWLRPDVSTFCMGMAMSMGAVILAAGQKGKRYTLPNSTVL 143

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA+DIE  A++I++++R L EI  K+ G+T E + +  DR++ +SA +A 
Sbjct: 144 IHQPLGGAEGQAADIEITAREILRLRRNLYEILAKHTGQTIERIMQDSDRNYYLSAQQAV 203

Query: 197 DWGVVDKVL 205
           ++G+VD VL
Sbjct: 204 EYGLVDDVL 212


>gi|16801674|ref|NP_471942.1| ATP-dependent Clp protease proteolytic subunit [Listeria innocua
           Clip11262]
 gi|20137847|sp|Q928C4|CLPP_LISIN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|16415149|emb|CAC97839.1| ATP-dependent Clp protease proteolytic subunit [Listeria innocua
           Clip11262]
 gi|313622455|gb|EFR92900.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           innocua FSL J1-023]
          Length = 198

 Score =  271 bits (694), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 106/197 (53%), Positives = 151/197 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT+RGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL+A++P+K+I
Sbjct: 1   MNLIPTVIEQTSRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG ++AGMAIYDTM F+K  + T  MG AASMGS LL+AG  G RFALPNA I
Sbjct: 61  FLYINSPGGSISAGMAIYDTMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+KIK R+N I  +  G+ YE + +  DRD+ M+A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAARHILKIKERMNTIMAEKTGQPYEVIARDTDRDNFMTAQEA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
            D+G++D +++++  ++
Sbjct: 181 KDYGLIDDIIVNKSGLK 197


>gi|156541196|ref|XP_001599209.1| PREDICTED: hypothetical protein [Nasonia vitripennis]
          Length = 234

 Score =  271 bits (694), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 112/192 (58%), Positives = 152/192 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           L LVP+VVEQT RGER+YDIYSRLLKERI+ + G I D +++L+ AQLLFL++E+ +K I
Sbjct: 23  LNLVPIVVEQTGRGERAYDIYSRLLKERIICLMGPITDDISSLVVAQLLFLQSESSKKPI 82

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVTAG+ IYDTMQ++ PP++T+C+GQA SM SLLL+AG  GMR ALPNARI
Sbjct: 83  HLYINSPGGVVTAGLGIYDTMQYVLPPVATWCVGQACSMASLLLAAGAPGMRHALPNARI 142

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+DI   A++I+K+K ++N +Y K+ G   + +E  ++RD  M+  EA
Sbjct: 143 MIHQPSGGVQGQATDIRIQAEEILKLKGQINALYAKHTGLDIQRIENNMERDKFMTPIEA 202

Query: 196 CDWGVVDKVLMS 207
            ++G++DKVL  
Sbjct: 203 KEFGIIDKVLEH 214


>gi|118602249|ref|YP_903464.1| ATP-dependent Clp protease proteolytic subunit [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|166214707|sp|A1AVN6|CLPP_RUTMC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|118567188|gb|ABL01993.1| ATP-dependent Clp protease proteolytic subunit ClpP [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
          Length = 198

 Score =  271 bits (694), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 122/193 (63%), Positives = 161/193 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           L  +P+VVEQ+ RGER+YDIYSRLLKERI+F+ G IED+MA ++ AQLLFLE+ENP ++I
Sbjct: 6   LNQIPIVVEQSARGERAYDIYSRLLKERIIFLVGPIEDYMANVVVAQLLFLESENPDQDI 65

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG+V+AG+AIYDTMQFIKP +ST C+GQAASMG+LLL+AG K  RFALPN R 
Sbjct: 66  HLYINSPGGLVSAGLAIYDTMQFIKPDVSTLCIGQAASMGALLLTAGAKDKRFALPNVRC 125

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGFSGQASDI+ HAQ+I+K++ +LN+I+  +  +T + ++K  DRD+ MSA+EA
Sbjct: 126 MIHQPLGGFSGQASDIDIHAQEILKVREKLNQIFKLHTSQTIKTIQKDTDRDNFMSANEA 185

Query: 196 CDWGVVDKVLMSR 208
             +G++DKVL  R
Sbjct: 186 TKYGLIDKVLAKR 198


>gi|57242492|ref|ZP_00370430.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           upsaliensis RM3195]
 gi|57016777|gb|EAL53560.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           upsaliensis RM3195]
          Length = 194

 Score =  271 bits (694), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 112/189 (59%), Positives = 148/189 (78%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+E+T+RGERSYDIYSRLLK+RIV ++G+I D +A+ I AQLLFLEAE+PQK+I LY
Sbjct: 3   IPYVIEKTSRGERSYDIYSRLLKDRIVMLSGEINDDVASSIVAQLLFLEAEDPQKDIYLY 62

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGV+T+G +IYDTM +IKP + T C+GQAASMG+ LLS G K  RFALPN+RI++H
Sbjct: 63  INSPGGVITSGFSIYDTMNYIKPDVCTICIGQAASMGAFLLSCGAKQKRFALPNSRIMIH 122

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA+DIE  A++I+++K  LNEI  +N  +    + K  +RD  MSA EA ++
Sbjct: 123 QPLGGARGQATDIEIQAKEILRLKTILNEILAQNTNQKIARITKDTERDFFMSAIEAKEY 182

Query: 199 GVVDKVLMS 207
           G++DKVL  
Sbjct: 183 GLIDKVLEK 191


>gi|113953920|ref|YP_730624.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           CC9311]
 gi|113881271|gb|ABI46229.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. CC9311]
          Length = 196

 Score =  271 bits (694), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 96/190 (50%), Positives = 135/190 (71%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+E++ RGER++DIYSRLL+ERI+F+   +    A  I AQLLFLEAE+P+KEI L
Sbjct: 1   MIPIVIEESGRGERAFDIYSRLLRERIIFLGEPVTSDSANRIVAQLLFLEAEDPEKEIFL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG V  G+ I+DTMQ IKP + T C+G AASMG+ LL AG KG R +L ++RI++
Sbjct: 61  YVNSPGGSVYDGLGIFDTMQHIKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG SGQASDI   A +I+ +K RLN       G+  ++++   DRD  MS  +A +
Sbjct: 121 HQPLGGASGQASDIRIQADEILFLKDRLNHELADRTGQPLDKIQADTDRDFFMSPQQAME 180

Query: 198 WGVVDKVLMS 207
           +G++D V+  
Sbjct: 181 YGLIDNVIDK 190


>gi|121612255|ref|YP_999911.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|167004871|ref|ZP_02270629.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|166201812|sp|A1VXS0|CLPP_CAMJJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|87250345|gb|EAQ73303.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           jejuni subsp. jejuni 81-176]
          Length = 194

 Score =  271 bits (694), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 108/190 (56%), Positives = 147/190 (77%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            +P V+E+++RGERSYDIYSRLLK+RI+ ++G+I D +A  I AQLLFLEAE+P K+I L
Sbjct: 2   FIPYVIEKSSRGERSYDIYSRLLKDRIIMLSGEIHDELAASIVAQLLFLEAEDPTKDIYL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+T+G +IYDTM +IKP + T C+GQAASMG+ LLS G +G RFALPN+RI++
Sbjct: 62  YINSPGGVITSGFSIYDTMNYIKPDVCTICIGQAASMGAFLLSCGAEGKRFALPNSRIMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+++K  LN+I  KN  +   ++ K  +RD  MS  EA +
Sbjct: 122 HQPLGGARGQATDIEIQAKEILRLKTILNDILAKNTKQKVAKIAKDTERDFFMSTQEAKE 181

Query: 198 WGVVDKVLMS 207
           +G++DKVL  
Sbjct: 182 YGLIDKVLEK 191


>gi|13470920|ref|NP_102489.1| ATP-dependent protease proteolytic subunit ClpP-like protein
           [Mesorhizobium loti MAFF303099]
 gi|18202652|sp|Q98M38|CLPP1_RHILO RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|14021663|dbj|BAB48275.1| ATP-dependent protease proteolytic subunit ClpP-like protein
           [Mesorhizobium loti MAFF303099]
          Length = 201

 Score =  271 bits (694), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 127/195 (65%), Positives = 159/195 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
             LVPMV+EQ++RGER++DI+SRLL+ERI+F+ G+I D ++ L+CAQLL LE++NP KEI
Sbjct: 5   ASLVPMVIEQSSRGERAFDIFSRLLRERIIFINGEINDDVSALVCAQLLSLESDNPDKEI 64

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGGVVT+G AIYDTMQ++  P+ST CMG AASMGS LL AG  G R ALPNA I
Sbjct: 65  SLYINSPGGVVTSGFAIYDTMQYVSCPVSTVCMGFAASMGSFLLMAGTPGRRIALPNATI 124

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           LLHQP GGF GQASDI+RHA+ I K K+R+ E+Y ++CG++YEEVE+TLDRDH M+A EA
Sbjct: 125 LLHQPLGGFQGQASDIQRHAERIGKTKQRMAELYAQHCGRSYEEVERTLDRDHFMTAREA 184

Query: 196 CDWGVVDKVLMSRID 210
             WG+VD V  +R  
Sbjct: 185 QTWGIVDHVFDTRKK 199


>gi|223040072|ref|ZP_03610353.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           rectus RM3267]
 gi|222878658|gb|EEF13758.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           rectus RM3267]
          Length = 196

 Score =  271 bits (693), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 109/189 (57%), Positives = 152/189 (80%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+E+T++GERSYDIYSRLLK+RI+ ++G+IED +A+ I AQ+LFLEAE+P K+I LY
Sbjct: 5   IPYVIERTSKGERSYDIYSRLLKDRIIMLSGEIEDGIASAIVAQMLFLEAEDPDKDIYLY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGV+T+G +IYDTM +IKP + T C+GQAASMG+ LLS G +G R+ALPN+RI++H
Sbjct: 65  INSPGGVITSGFSIYDTMNYIKPDVCTICIGQAASMGAFLLSCGAQGKRYALPNSRIMIH 124

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA+DIE  A++I+++K  LN I  KN G+   +++K  DRD  MS++EA ++
Sbjct: 125 QPLGGARGQATDIEIQAKEILRMKEILNAILAKNTGQKLAKIQKDTDRDFFMSSAEAKEY 184

Query: 199 GVVDKVLMS 207
           G++DKVL  
Sbjct: 185 GLIDKVLEK 193


>gi|56269518|gb|AAH87510.1| LOC496087 protein [Xenopus laevis]
          Length = 243

 Score =  271 bits (693), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 112/197 (56%), Positives = 157/197 (79%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
           S  +   L+P+VVEQT RGER+YDIYSRLL+ERI+ V G I+D +++++ AQLLFL++E+
Sbjct: 23  SPPILSPLIPIVVEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSES 82

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
            +K I +YINSPGG VTAG+AIYDTMQ+I  PI T+C+GQAASMGSLLL+AG  GMR +L
Sbjct: 83  NKKPIHMYINSPGGSVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSSGMRHSL 142

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           PN+RI++HQPSGG  GQA+DI   A++I+K+K+++NEIY K+  +    +E  ++RD  M
Sbjct: 143 PNSRIMIHQPSGGARGQATDIAIQAEEILKLKKQINEIYAKHTRQPLSVIESVMERDRYM 202

Query: 191 SASEACDWGVVDKVLMS 207
           S +EA ++G++DKVL+ 
Sbjct: 203 SPTEAQEFGILDKVLVH 219


>gi|237751093|ref|ZP_04581573.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter bilis
           ATCC 43879]
 gi|229373538|gb|EEO23929.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter bilis
           ATCC 43879]
          Length = 196

 Score =  271 bits (693), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 106/192 (55%), Positives = 150/192 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P V+E+T RGERSYDIYSRLLK+RI+ ++G+I+D +++ I AQLLFLEAE+PQK++
Sbjct: 1   MNYIPYVIEKTGRGERSYDIYSRLLKDRIIMLSGEIDDSVSSSIVAQLLFLEAEDPQKDV 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VT+G +IYDTM +IKP I T C+GQAASMG+ LLS G KG R+ALP+ARI
Sbjct: 61  FLYINSPGGSVTSGFSIYDTMNYIKPDICTICVGQAASMGAFLLSCGTKGKRYALPHARI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DIE  A++I+++K  +N+I   N G++ +++ +  +RD  MSA EA
Sbjct: 121 MIHQPLGGARGQATDIEIQAKEILRLKTIINDILAANTGQSVKKITQDCERDFYMSADEA 180

Query: 196 CDWGVVDKVLMS 207
             +G++D V+  
Sbjct: 181 QKYGLIDSVMTR 192


>gi|258404644|ref|YP_003197386.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Desulfohalobium retbaense DSM 5692]
 gi|257796871|gb|ACV67808.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Desulfohalobium retbaense DSM 5692]
          Length = 197

 Score =  271 bits (693), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 116/193 (60%), Positives = 158/193 (81%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP+V+E T RGER+YDIYSRLLK+RI+ +   I+D++A LICAQLLFLE+ENP KEI+ Y
Sbjct: 3   VPIVIESTGRGERAYDIYSRLLKDRIILLGTPIDDNVANLICAQLLFLESENPDKEINFY 62

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VT+G+AIYDTMQ+I  P++T C+GQAASMG++LL+AGE GMR+ALP+ RI+LH
Sbjct: 63  INSPGGSVTSGLAIYDTMQYISAPVATLCLGQAASMGAVLLAAGEPGMRYALPHGRIMLH 122

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GGF GQA+DI+  A++I+++K  LN I  ++ G   E++E+  DRD+ M A+EA D+
Sbjct: 123 QPMGGFQGQATDIDIQAREILRLKSSLNSILSRHTGVELEKMERDTDRDYFMGATEAADY 182

Query: 199 GVVDKVLMSRIDI 211
           GV+D+VL SR ++
Sbjct: 183 GVIDQVLASRREM 195


>gi|254432163|ref|ZP_05045866.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanobium sp.
           PCC 7001]
 gi|197626616|gb|EDY39175.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanobium sp.
           PCC 7001]
          Length = 196

 Score =  271 bits (693), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 99/192 (51%), Positives = 137/192 (71%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+E++ RGER++DIYSRLL+ERIVF+   +    A  I AQLLFLEAE+P+K+I L
Sbjct: 1   MIPIVIEESGRGERAFDIYSRLLRERIVFLGEPVTAESANRIVAQLLFLEAEDPEKDIFL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I+DTMQ IKP + T C+G AASMG+ LL AG KG R +L ++RI++
Sbjct: 61  YINSPGGSVYDGLGIFDTMQHIKPDVQTVCVGLAASMGAFLLCAGTKGKRSSLTHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A +I+ +K++LN+      G+    +E+  DRD  MS +EA  
Sbjct: 121 HQPLGGARGQASDIRIQADEILYLKQKLNQELADRTGQPMTRIEEDTDRDFFMSPAEAMA 180

Query: 198 WGVVDKVLMSRI 209
           +G++DKV+  R 
Sbjct: 181 YGLIDKVIEKRA 192


>gi|89100779|ref|ZP_01173633.1| ATP-dependent Clp protease, proteolytic subunit [Bacillus sp. NRRL
           B-14911]
 gi|89084537|gb|EAR63684.1| ATP-dependent Clp protease, proteolytic subunit [Bacillus sp. NRRL
           B-14911]
          Length = 193

 Score =  271 bits (693), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 102/192 (53%), Positives = 141/192 (73%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P V+EQ++RGERSYDIYSRLLK+RI+ +  +I DH+A  + AQLLFL A+ P K+I
Sbjct: 1   MTAIPYVIEQSSRGERSYDIYSRLLKDRIIMIGEEINDHVANSVIAQLLFLAADAPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG  TAG AIYDTMQ+IKP + T C G AAS G++LL AG KG R +LPN+ I
Sbjct: 61  SLYINSPGGSTTAGFAIYDTMQYIKPDVRTICTGMAASFGAMLLLAGTKGKRCSLPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K++  +N I  +  G+  E+V +  DRD+ MSA EA
Sbjct: 121 MIHQPLGGARGQATEIEISAKRILKLREHINGIISEKTGQPVEKVARDTDRDYFMSAEEA 180

Query: 196 CDWGVVDKVLMS 207
            ++G++D ++  
Sbjct: 181 KEYGIIDTIIFH 192


>gi|323705911|ref|ZP_08117482.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534709|gb|EGB24489.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 194

 Score =  271 bits (693), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 110/194 (56%), Positives = 150/194 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQTNRGERSYDIYSRLLK+RIVF+  +I D  A+L+ AQLLFLE E+P K+I
Sbjct: 1   MSLVPIVVEQTNRGERSYDIYSRLLKDRIVFLGEEINDVSASLVVAQLLFLEGEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +T+  AIYDTMQ+IKP + T C+G AAS G+ LL+AG KG RF+LPN+ I
Sbjct: 61  WLYINSPGGSITSAFAIYDTMQYIKPDVVTMCVGMAASAGAFLLAAGAKGKRFSLPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+ HA+ I+K+K++LN+I  +  G+  E++E+  +RD  M   EA
Sbjct: 121 MIHQPLGGTQGQATDIKIHAERIIKMKQKLNKILSERTGQPLEKIERDTERDFFMDPEEA 180

Query: 196 CDWGVVDKVLMSRI 209
             +G++D++L+ R 
Sbjct: 181 KAYGLIDEILVKRK 194


>gi|229916596|ref|YP_002885242.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Exiguobacterium sp. AT1b]
 gi|229468025|gb|ACQ69797.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Exiguobacterium sp. AT1b]
          Length = 191

 Score =  271 bits (693), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 115/190 (60%), Positives = 152/190 (80%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P V+EQT RGER+YDIYSRLLK+RI+ +   I+D++A  I AQLLFL AE+P+K+ISL
Sbjct: 2   LIPTVIEQTGRGERAYDIYSRLLKDRIILLGSAIDDNVANSIVAQLLFLAAEDPEKDISL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TAGMAIYDTM FIKP +ST C+G AASMG+ LL AGEKG RFALPNA I++
Sbjct: 62  YINSPGGSITAGMAIYDTMNFIKPNVSTICIGMAASMGAFLLQAGEKGKRFALPNAEIMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI+ HA+ I+K++ +LN+I  +N G+  E +E+  +RD+ M+A +A D
Sbjct: 122 HQPLGGTQGQASDIKIHAERIIKMREKLNQIMAENTGQPLEVIERDTERDYFMAADQAKD 181

Query: 198 WGVVDKVLMS 207
           +G++DKV+  
Sbjct: 182 YGLIDKVMTR 191


>gi|328950943|ref|YP_004368278.1| ATP-dependent Clp protease proteolytic subunit [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451267|gb|AEB12168.1| ATP-dependent Clp protease proteolytic subunit [Marinithermus
           hydrothermalis DSM 14884]
          Length = 194

 Score =  271 bits (693), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 100/193 (51%), Positives = 145/193 (75%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP V+EQT RGER YDIYSRLLK+RI+F+   I+  +A  + AQ+LFLEA+NP +EI L
Sbjct: 2   VVPYVIEQTARGERVYDIYSRLLKDRIIFLGTPIDTQVANTVVAQILFLEAQNPNQEIKL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+AIYDTMQ+++ P+ST C+G AASM +++L+AGE G R+ALP++R+++
Sbjct: 62  YINSPGGEVDAGLAIYDTMQYVRAPVSTICVGLAASMAAVILAAGEPGRRYALPHSRVMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DI   A+ I+K++  LN+I  ++ G+  E+V +  DR+  M A  A +
Sbjct: 122 HQPWGGARGQAADIAIEAEQILKMRENLNKILSQHTGQPLEKVTRDTDRNFWMDAQMAKE 181

Query: 198 WGVVDKVLMSRID 210
           +G+VD+V+    +
Sbjct: 182 YGIVDQVVSREAE 194


>gi|255323211|ref|ZP_05364346.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           showae RM3277]
 gi|255299734|gb|EET79016.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
           showae RM3277]
          Length = 196

 Score =  271 bits (693), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 110/189 (58%), Positives = 152/189 (80%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+E+T++GERSYDIYSRLLK+RI+ ++G+IED MA+ I AQ+LFLEAE+P K+I LY
Sbjct: 5   IPYVIERTSKGERSYDIYSRLLKDRIIMLSGEIEDGMASAIVAQMLFLEAEDPDKDIYLY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGV+T+G +IYDTM +IKP + T C+GQAASMG+ LLS G +G R+ALPN+RI++H
Sbjct: 65  INSPGGVITSGFSIYDTMNYIKPDVCTICIGQAASMGAFLLSCGAQGKRYALPNSRIMIH 124

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA+DIE  A++I+++K  LN I  KN G+   +++K  DRD  MS++EA ++
Sbjct: 125 QPLGGARGQATDIEIQAKEILRMKEILNAILAKNTGQKLAKIQKDTDRDFFMSSAEAKEY 184

Query: 199 GVVDKVLMS 207
           G++DKVL  
Sbjct: 185 GLIDKVLEK 193


>gi|332179133|gb|AEE14822.1| ATP-dependent Clp protease proteolytic subunit [Thermodesulfobium
           narugense DSM 14796]
          Length = 199

 Score =  271 bits (693), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 100/191 (52%), Positives = 147/191 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P V E+T+ GER YDIYS+LL +RI+F+   I + +A L+ AQ+LFLEA++P ++I L
Sbjct: 8   LIPTVTERTSHGERVYDIYSKLLNDRIIFLGTAINEDVANLVVAQMLFLEADDPNRDIYL 67

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG+VTAG+AIYDTMQ++K P++T C GQAASM +++L+AGE+G R+ LPN+R+L+
Sbjct: 68  YINSPGGIVTAGLAIYDTMQYVKSPVNTICFGQAASMAAVILAAGERGKRYCLPNSRVLI 127

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DI   A++I+K+K  LN+I  K+ GK   +++   +RD  M A +A +
Sbjct: 128 HQPLGGAEGQATDIAIQAKEILKVKDTLNQILAKHTGKNITKIKNDTERDFYMDAKQAKE 187

Query: 198 WGVVDKVLMSR 208
           +G+VD++L  R
Sbjct: 188 YGIVDEILEKR 198


>gi|154497945|ref|ZP_02036323.1| hypothetical protein BACCAP_01925 [Bacteroides capillosus ATCC
           29799]
 gi|150272935|gb|EDN00092.1| hypothetical protein BACCAP_01925 [Bacteroides capillosus ATCC
           29799]
          Length = 193

 Score =  271 bits (693), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 109/193 (56%), Positives = 144/193 (74%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP VVEQTNRGERSYDI+SRLL +RI+F+  ++    A+L+ AQ+L+LEA++P K+I
Sbjct: 1   MSLVPYVVEQTNRGERSYDIFSRLLNDRIIFLGEEVNATTASLVVAQMLYLEAQDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG VT GMAIYDTMQ+IK  +ST C+G AASMG+ LLS+G KG R ALPNA I
Sbjct: 61  QFYINSPGGSVTDGMAIYDTMQYIKCDVSTICIGMAASMGAFLLSSGTKGKRLALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPS G  GQ +D+  H + +  IK+R+N+I   N GK  E V    +RD+ MSA EA
Sbjct: 121 MIHQPSAGTQGQITDMAIHLKRLEVIKKRMNKILADNTGKPVEVVTADCERDNFMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
           C++G++DKV+  R
Sbjct: 181 CEYGLIDKVIYQR 193


>gi|114674891|ref|XP_512312.2| PREDICTED: endopeptidase Clp [Pan troglodytes]
          Length = 277

 Score =  271 bits (693), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 115/195 (58%), Positives = 156/195 (80%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
              L L+P+VVEQT RGER+YDIYSRLL+ERIV V G I+D +A+L+ AQLLFL++E+ +
Sbjct: 53  ARALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNK 112

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K I +YINSPGGVVTAG+AIYDTMQ+I  PI T+C+GQAASMGSLLL+AG  GMR +LPN
Sbjct: 113 KPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPN 172

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           +RI++HQPSGG  GQA+DI   A++I+K+K++L  IY K+  ++ + +E  ++RD  MS 
Sbjct: 173 SRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSP 232

Query: 193 SEACDWGVVDKVLMS 207
            EA ++G++DKVL+ 
Sbjct: 233 MEAQEFGILDKVLVH 247


>gi|75676090|ref|YP_318511.1| peptidase S14, ClpP [Nitrobacter winogradskyi Nb-255]
 gi|90101410|sp|Q3SRD2|CLPP_NITWN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|74420960|gb|ABA05159.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nitrobacter
           winogradskyi Nb-255]
          Length = 212

 Score =  271 bits (693), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 139/208 (66%), Positives = 176/208 (84%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  + ++ LVPMVVEQTNRGER+YDI+SRLLKERI+FVTG +ED+M+ L+ AQLLFLEA
Sbjct: 2   RDPVETYMNLVPMVVEQTNRGERAYDIFSRLLKERIIFVTGGVEDNMSMLVVAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEIS+YINSPGGVVT+G+AIYDTMQFI+PP++T C GQAASMGSLLL+AGEK MR 
Sbjct: 62  ENPKKEISMYINSPGGVVTSGLAIYDTMQFIRPPVATLCTGQAASMGSLLLAAGEKDMRH 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           ALPNARI++HQPSGGF GQA+DI  HAQ+I+ +K+RLNEIYVK+ G+TY+ +E  L+RD 
Sbjct: 122 ALPNARIMVHQPSGGFQGQATDIMLHAQEILSLKKRLNEIYVKHTGQTYQAIEDALERDK 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIEEKSK 216
            ++A  A D+G+VDKV+  R +     K
Sbjct: 182 FLTADMARDFGIVDKVIDKRAEDPAAPK 209


>gi|301622698|ref|XP_002940664.1| PREDICTED: putative ATP-dependent Clp protease proteolytic subunit,
           mitochondrial [Xenopus (Silurana) tropicalis]
          Length = 247

 Score =  271 bits (693), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 114/196 (58%), Positives = 156/196 (79%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
             V   LVP+VVEQT RGER+YDIYSRLL+ERI+ V G I+D +++L+ AQLLFL++E+ 
Sbjct: 28  PPVLSPLVPIVVEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSLVVAQLLFLQSESN 87

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K I +YINSPGG VTAG+AIYDTMQ+I  PI T+C+GQAASMGSLLL+AG  GMR +LP
Sbjct: 88  KKPIHMYINSPGGSVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSSGMRHSLP 147

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+RI++HQPSGG  GQA+DI   A++I+K+K+++NEIY K+  +    +E  ++RD  MS
Sbjct: 148 NSRIMIHQPSGGARGQATDIAIQAEEILKLKKQINEIYAKHTRQPLSVIESVMERDRYMS 207

Query: 192 ASEACDWGVVDKVLMS 207
            +EA ++G++DKVL+ 
Sbjct: 208 PTEAQEFGILDKVLVH 223


>gi|118791462|ref|XP_319765.3| AGAP009019-PA [Anopheles gambiae str. PEST]
 gi|116117612|gb|EAA14822.3| AGAP009019-PA [Anopheles gambiae str. PEST]
          Length = 225

 Score =  271 bits (693), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 114/201 (56%), Positives = 154/201 (76%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
           FL LVP+VVEQT RGER+YDI+SRLLKERI+ + G I D +++LI AQLLFL++EN  K 
Sbjct: 24  FLNLVPIVVEQTGRGERAYDIFSRLLKERIICLMGPIHDDLSSLIVAQLLFLQSENGTKP 83

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I +YINSPGG VTAG+AIYDTMQ++KPP++T+C+GQA SMGSLLL+AG  GMR +LPNAR
Sbjct: 84  IHMYINSPGGSVTAGLAIYDTMQYVKPPVATWCVGQACSMGSLLLAAGAPGMRHSLPNAR 143

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQPSGG  GQA+DI+  A++I+K+K++L EIY K+   + + +   ++RD  +S  E
Sbjct: 144 IMIHQPSGGAQGQATDIQIQAEEILKLKKQLTEIYGKHTKTSLDVLYSKMERDTFLSPEE 203

Query: 195 ACDWGVVDKVLMSRIDIEEKS 215
           A   G++D VL       E +
Sbjct: 204 AQTLGIIDTVLEHPPSSTEAA 224


>gi|165933331|ref|YP_001650120.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
           rickettsii str. Iowa]
 gi|165908418|gb|ABY72714.1| ATP-dependent endopeptidase clp proteolytic subunit [Rickettsia
           rickettsii str. Iowa]
          Length = 216

 Score =  270 bits (692), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 126/208 (60%), Positives = 167/208 (80%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           M+      +  E + +  VP+V+E T+RGER+YDIYSRLLKERI+FV   +EDHMA LI 
Sbjct: 1   MTKNYLINQFQEKILMSYVPIVIEPTSRGERAYDIYSRLLKERIIFVCSTVEDHMANLIV 60

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLEAENP+K+I +YINSPGGVVTAG+AIYDTMQ+IKP ++T C+GQA SMGSLLL 
Sbjct: 61  AQLLFLEAENPKKDIYMYINSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSLLLC 120

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
            GEKGMR++LP++RI++HQPSGG+ GQA+DIE HAQ+ +KIKR LNE+Y K+  +  + +
Sbjct: 121 GGEKGMRYSLPHSRIMIHQPSGGYKGQATDIEIHAQETLKIKRLLNELYSKHTEQELQHI 180

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           EK+++RD+ MS  EA  +G+VD ++ SR
Sbjct: 181 EKSMERDNFMSPEEAKKFGLVDNIISSR 208


>gi|56207353|emb|CAI20832.1| novel protein similar to human and mouse ClpP caseinolytic
           protease, ATP-dependent, proteolytic subunit homolog (E.
           coli) (CLPP) [Danio rerio]
          Length = 266

 Score =  270 bits (692), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 118/192 (61%), Positives = 156/192 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
             L+P+VVEQT RGER+YDIYSRLL+ERI+ V G I+D +A+L+ AQLLFL++E+  K I
Sbjct: 27  SPLIPIVVEQTGRGERAYDIYSRLLRERIICVMGPIDDSVASLVIAQLLFLQSESNNKPI 86

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVT+G+AIYDTMQ+I  PIST+C+GQAASMGSLLL+AG  GMR +LPNARI
Sbjct: 87  HMYINSPGGVVTSGLAIYDTMQYILNPISTWCVGQAASMGSLLLAAGTAGMRHSLPNARI 146

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+DI   A++I+K+KR++N IY K+ G+  E +E  ++RD  MS  EA
Sbjct: 147 MVHQPSGGARGQATDIAIQAEEILKLKRQINNIYSKHTGQLLETIESVMERDRYMSPMEA 206

Query: 196 CDWGVVDKVLMS 207
            D+G++DKVL+ 
Sbjct: 207 QDFGIIDKVLVH 218


>gi|57238933|ref|YP_180069.1| ATP-dependent Clp protease proteolytic subunit [Ehrlichia
           ruminantium str. Welgevonden]
 gi|58578866|ref|YP_197078.1| ATP-dependent Clp protease proteolytic subunit [Ehrlichia
           ruminantium str. Welgevonden]
 gi|67460160|sp|Q5HBX5|CLPP_EHRRW RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|57161012|emb|CAH57918.1| ATP-dependent Clp protease proteolytic subunit [Ehrlichia
           ruminantium str. Welgevonden]
 gi|58417492|emb|CAI26696.1| ATP-dependent CLP protease proteolytic subunit [Ehrlichia
           ruminantium str. Welgevonden]
          Length = 198

 Score =  270 bits (692), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 136/197 (69%), Positives = 173/197 (87%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT+RGER+YDIYSRLLKERI+F+TG IED MA+L+ AQL+FLEAENP+K+I
Sbjct: 1   MTLVPMVVEQTSRGERAYDIYSRLLKERIIFITGPIEDQMASLVVAQLIFLEAENPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGGVVTAG++IYDTMQ++KP I+T C+GQAASMGSLLL+AGEKGMR ALPN+RI
Sbjct: 61  SMYINSPGGVVTAGLSIYDTMQYVKPRIATLCLGQAASMGSLLLAAGEKGMRCALPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGGF GQA+DIE HA++I+ IK RLN IYVK+ G+   EV  +++RD+ MSA  A
Sbjct: 121 MIHQPSGGFQGQATDIEIHAKEILNIKSRLNYIYVKHTGRELSEVVASMERDNFMSADSA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
            D+G++DKV+  R+DI+
Sbjct: 181 QDFGIIDKVIEKRLDID 197


>gi|225164221|ref|ZP_03726495.1| Endopeptidase Clp [Opitutaceae bacterium TAV2]
 gi|224801160|gb|EEG19482.1| Endopeptidase Clp [Opitutaceae bacterium TAV2]
          Length = 222

 Score =  270 bits (692), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 111/192 (57%), Positives = 152/192 (79%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP+V+E T RGERS DIYSRLLK+RI+F+   I+D +A ++ AQLLFL+ E+P+K+I LY
Sbjct: 21  VPIVLENTGRGERSMDIYSRLLKDRIIFIGTPIDDGVANVVIAQLLFLQMEDPKKDIHLY 80

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGVVT GMAIYDT+ F++  + T+C+GQAASM ++LLSAG KG RFALPN+R+++H
Sbjct: 81  INSPGGVVTGGMAIYDTINFLQCDVVTYCVGQAASMATVLLSAGTKGKRFALPNSRVMIH 140

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  GQA+DI   A++I++ +R L+E   ++ GKT E+V+K  DRD+ +SA EA D+
Sbjct: 141 QPSGGAGGQAADITIAAKEILRWRRTLSETIARHTGKTPEQVDKDSDRDYYLSAQEAKDY 200

Query: 199 GVVDKVLMSRID 210
           G+VD V+ S  D
Sbjct: 201 GLVDHVVTSTRD 212


>gi|88808603|ref|ZP_01124113.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           WH 7805]
 gi|88787591|gb|EAR18748.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           WH 7805]
          Length = 196

 Score =  270 bits (692), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 98/192 (51%), Positives = 137/192 (71%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+E++ RGER++DIYSRLL+ERI+F+   +    A  I AQLLFLEAE+P+K+I L
Sbjct: 1   MIPIVIEESGRGERAFDIYSRLLRERIIFLGEAVTSESANRIVAQLLFLEAEDPEKDIFL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I+DTMQ IKP + T C+G AASMG+ LL AG KG R +L ++RI++
Sbjct: 61  YINSPGGSVYDGLGIFDTMQHIKPDVQTVCVGLAASMGAFLLCAGAKGKRSSLRHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A +I+ +K RLN+   +   +  E++++  DRD  MS  EA D
Sbjct: 121 HQPLGGARGQASDIRIQADEILFLKNRLNQELAERTSQPLEKIQEDTDRDFFMSPHEAAD 180

Query: 198 WGVVDKVLMSRI 209
           +G++D V+  R 
Sbjct: 181 YGLIDSVIDKRP 192


>gi|291460376|ref|ZP_06599766.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Oribacterium
           sp. oral taxon 078 str. F0262]
 gi|291416943|gb|EFE90662.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Oribacterium
           sp. oral taxon 078 str. F0262]
          Length = 209

 Score =  270 bits (692), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 107/205 (52%), Positives = 155/205 (75%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
           S+   +  +P V++ T+RGERSYDI+SRLL ERIVF+  ++ +  A+L+ AQLL+LE+E+
Sbjct: 5   SDPRGIATIPYVIQSTSRGERSYDIFSRLLNERIVFLGDEVNNDTASLVVAQLLYLESED 64

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
           P K++SLYINSPGGV+TAGMAIYDTMQ+IK  +ST C+G AASMG+ LL+ G KG R  L
Sbjct: 65  PDKDVSLYINSPGGVITAGMAIYDTMQYIKCDVSTICVGMAASMGAFLLAGGTKGKRMIL 124

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           PNA +++HQPSGG  GQA++I+  A+ I++ K+ + EI  +NCG++ E+V +  +RDH M
Sbjct: 125 PNAEVMIHQPSGGAQGQATEIQITAEWILRTKKHMAEILAENCGQSLEKVLEDTERDHWM 184

Query: 191 SASEACDWGVVDKVLMSRIDIEEKS 215
            A +A  +G+VD++  SR + E K+
Sbjct: 185 DAEQALSYGLVDRIFRSRGESEGKA 209


>gi|78778230|ref|YP_394545.1| ATP-dependent Clp protease proteolytic subunit [Sulfurimonas
           denitrificans DSM 1251]
 gi|124015202|sp|Q30NX1|CLPP_SULDN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|78498770|gb|ABB45310.1| ATP-dependent Clp protease proteolytic subunit ClpP [Sulfurimonas
           denitrificans DSM 1251]
          Length = 196

 Score =  270 bits (692), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 112/195 (57%), Positives = 157/195 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P VVE+T RGERSYDIYSRLLK+RI+ ++G++ D +A+ I AQ+LFLEAE+P+K+I
Sbjct: 1   MSYIPYVVEKTARGERSYDIYSRLLKDRIIMLSGEVNDAVASSIVAQMLFLEAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGGVVTAGMAIYDTM +I+P ++T C+GQAASMG+ LLS+G KG R+ALP+ARI
Sbjct: 61  YFYINSPGGVVTAGMAIYDTMNYIRPDVATICVGQAASMGAFLLSSGAKGKRYALPHARI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI   A++I+++K  LN I  KNC ++ ++VEK  DRD+ MSA E+
Sbjct: 121 MIHQPLGGAQGQATDIAIQAKEILRMKEELNAILAKNCSQSIKKVEKDTDRDNFMSAEES 180

Query: 196 CDWGVVDKVLMSRID 210
            ++G++D+VL+ +  
Sbjct: 181 KEYGMIDEVLLKKSK 195


>gi|327264015|ref|XP_003216812.1| PREDICTED: putative ATP-dependent Clp protease proteolytic subunit,
           mitochondrial-like [Anolis carolinensis]
          Length = 266

 Score =  270 bits (692), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 115/207 (55%), Positives = 160/207 (77%), Gaps = 1/207 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           +S   C  +   +  + L+P+VVEQT RGER+YDIYSRLL+ERIV V G I+D +A+L+ 
Sbjct: 32  LSVSRCLHQSPRN-HIPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDGVASLVI 90

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFL++E+ +K I +YINSPGG VT+G+AIYDTMQ+I  PI T+C+GQAASMGSLLL+
Sbjct: 91  AQLLFLQSESNKKPIHMYINSPGGTVTSGLAIYDTMQYILNPICTWCVGQAASMGSLLLA 150

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG  GMR +LPN+RI++HQPSGG  GQA+DI   A++I+K+K+++N IY K+  +  E +
Sbjct: 151 AGSPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEILKLKKQINGIYAKHTKQNLEVI 210

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMS 207
           E  ++RD  MS  EA ++G++DKVL+ 
Sbjct: 211 EAAMERDRYMSPVEAQEFGILDKVLVH 237


>gi|284046814|ref|YP_003397154.1| ATP-dependent Clp protease proteolytic subunit ClpP [Conexibacter
           woesei DSM 14684]
 gi|283951035|gb|ADB53779.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Conexibacter
           woesei DSM 14684]
          Length = 193

 Score =  270 bits (692), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 105/192 (54%), Positives = 144/192 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMV+E+T RGER +DIYSRLL ERI+F+   ++D +A LI AQLL LE+ +P K+I
Sbjct: 1   MPLVPMVIERTARGEREFDIYSRLLNERIIFLGTAVDDQVANLIVAQLLHLESSDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGG + AG+AIYDTMQFIKP + T C G A SMGSLLL  G +G R +LPN+RI
Sbjct: 61  SIYINSPGGSIYAGLAIYDTMQFIKPDVQTICCGIAMSMGSLLLMGGARGKRMSLPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQPS GF GQ++DIE HA++I+K ++R++EIY  + G+  E V   ++RD      EA
Sbjct: 121 LIHQPSAGFEGQSTDIEIHAREIIKTRKRIDEIYAFHTGQPEERVNHDMERDRFFKPDEA 180

Query: 196 CDWGVVDKVLMS 207
            ++G++D+V+  
Sbjct: 181 VEYGLIDRVITK 192


>gi|228901328|ref|ZP_04065521.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis IBL 4222]
 gi|228858306|gb|EEN02773.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis IBL 4222]
          Length = 198

 Score =  270 bits (692), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 103/193 (53%), Positives = 139/193 (72%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ +K+I
Sbjct: 6   MNAIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDI 65

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I
Sbjct: 66  YLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEI 125

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+A EA
Sbjct: 126 MIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMTAEEA 185

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD V+  +
Sbjct: 186 KEYGIVDDVVTKK 198


>gi|295696500|ref|YP_003589738.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           tusciae DSM 2912]
 gi|295412102|gb|ADG06594.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           tusciae DSM 2912]
          Length = 192

 Score =  270 bits (692), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 107/190 (56%), Positives = 146/190 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP+VVEQT+RGERSYDIYSRLLK+RI+F+   I+D +A  + AQLLFL AE+P+K++
Sbjct: 1   MYFVPIVVEQTSRGERSYDIYSRLLKDRIIFLGTPIDDQVANSVIAQLLFLAAEDPEKDV 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG VTAGMAI DTMQ+I+P ++T C+G AASM ++LL+AG KG R ALPN+ I
Sbjct: 61  SLYINSPGGSVTAGMAILDTMQYIRPDVATICVGMAASMAAVLLAAGAKGKRRALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA DI+ HA  I++++ +LN I  +  G+    +E+  DRD  MSA EA
Sbjct: 121 MIHQPLGGVQGQAVDIKIHADRILRVREKLNRILSERTGQPLSRIEEDTDRDRFMSADEA 180

Query: 196 CDWGVVDKVL 205
            ++G++D V+
Sbjct: 181 KEYGLIDDVI 190


>gi|226310010|ref|YP_002769904.1| ATP-dependent Clp protease proteolytic subunit [Brevibacillus
           brevis NBRC 100599]
 gi|226092958|dbj|BAH41400.1| ATP-dependent Clp protease proteolytic subunit [Brevibacillus
           brevis NBRC 100599]
          Length = 193

 Score =  270 bits (692), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 109/192 (56%), Positives = 146/192 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P+VVEQT+ GERSYDIYSRLLK+RI+F+   I+D +A  + AQLLFL AE+P+K+I
Sbjct: 1   MNLIPVVVEQTSYGERSYDIYSRLLKDRIIFLGSAIDDQVANAVVAQLLFLAAEDPKKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMAI DTM+F+ P +ST C G AASMG++LL AG  G R+ALPNA +
Sbjct: 61  HLYINSPGGSVTAGMAIIDTMKFVAPDVSTICTGMAASMGAMLLVAGAPGKRYALPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +LHQP GG  GQASDI+  A  I++ +  L  I  +  GKT E++EK  DRD+ ++A+EA
Sbjct: 121 MLHQPWGGSQGQASDIKIAADRIMRHRHMLYTIISERTGKTVEQIEKDADRDYFLTAAEA 180

Query: 196 CDWGVVDKVLMS 207
            ++G++DKV+  
Sbjct: 181 LEYGLIDKVIEK 192


>gi|313632032|gb|EFR99140.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           seeligeri FSL N1-067]
 gi|313636395|gb|EFS02167.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           seeligeri FSL S4-171]
          Length = 198

 Score =  270 bits (692), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 106/197 (53%), Positives = 150/197 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT+RGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL+A++P+K+I
Sbjct: 1   MNLIPTVIEQTSRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG ++AGMAIYDTM F+K  + T  MG AASMGS LL+AG  G RFALPNA I
Sbjct: 61  FLYINSPGGSISAGMAIYDTMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+KIK R+N I     G+ YE + +  DRD+ M+A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAARHILKIKERMNTIMADKTGQPYEVIARDTDRDNFMTAQEA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
            D+G++D +++++  ++
Sbjct: 181 KDYGLIDDIIVNKAGLK 197


>gi|317153552|ref|YP_004121600.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316943803|gb|ADU62854.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 202

 Score =  270 bits (692), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 115/201 (57%), Positives = 161/201 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +PMV+E T R ER+YDIYSRLLK+RI+ ++  I+DH+A+LICAQLLFLE+E+P+KEI
Sbjct: 1   MVAIPMVIETTGRTERAYDIYSRLLKDRIILLSSAIDDHVASLICAQLLFLESEDPEKEI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVV+AGMAIYDTMQ+I  P+ST C+GQAASMG+LLL+AG +GMR+ALP++RI
Sbjct: 61  YMYINSPGGVVSAGMAIYDTMQYISAPVSTLCLGQAASMGALLLAAGAQGMRYALPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDI  HA++I++++  LN I   + G+  +++    +RD+ MS+ EA
Sbjct: 121 MIHQPLGGTQGQASDIHIHAKEILRLRDELNGILAGHTGQKLDKIRDDTERDYFMSSEEA 180

Query: 196 CDWGVVDKVLMSRIDIEEKSK 216
             +G++DKV+ SR D +E  K
Sbjct: 181 VKYGLIDKVMHSRADAQEGRK 201


>gi|116873833|ref|YP_850614.1| ATP-dependent Clp protease proteolytic subunit [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|116742711|emb|CAK21835.1| ATP-dependent Clp protease proteolytic subunit [Listeria welshimeri
           serovar 6b str. SLCC5334]
          Length = 198

 Score =  270 bits (692), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 106/197 (53%), Positives = 151/197 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT+RGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL+A++P+K+I
Sbjct: 1   MNLIPTVIEQTSRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG ++AGMAIYDTM F+K  + T  MG AASMGS LL+AG  G RFALPNA I
Sbjct: 61  FLYINSPGGSISAGMAIYDTMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+KIK R+N I  +  G+ YE + +  DRD+ M+A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAARHILKIKERMNTIMSEKTGQPYEVIARDTDRDNFMTAQEA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
            D+G++D +++++  ++
Sbjct: 181 KDYGLIDDIIVNKAGLK 197


>gi|148223587|ref|NP_001088816.1| ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit
           homolog [Xenopus laevis]
 gi|76779451|gb|AAI06237.1| LOC496087 protein [Xenopus laevis]
          Length = 247

 Score =  270 bits (692), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 112/197 (56%), Positives = 157/197 (79%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
           S  +   L+P+VVEQT RGER+YDIYSRLL+ERI+ V G I+D +++++ AQLLFL++E+
Sbjct: 27  SPPILSPLIPIVVEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSES 86

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
            +K I +YINSPGG VTAG+AIYDTMQ+I  PI T+C+GQAASMGSLLL+AG  GMR +L
Sbjct: 87  NKKPIHMYINSPGGSVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSSGMRHSL 146

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           PN+RI++HQPSGG  GQA+DI   A++I+K+K+++NEIY K+  +    +E  ++RD  M
Sbjct: 147 PNSRIMIHQPSGGARGQATDIAIQAEEILKLKKQINEIYAKHTRQPLSVIESVMERDRYM 206

Query: 191 SASEACDWGVVDKVLMS 207
           S +EA ++G++DKVL+ 
Sbjct: 207 SPTEAQEFGILDKVLVH 223


>gi|320535322|ref|ZP_08035441.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Treponema
           phagedenis F0421]
 gi|320147822|gb|EFW39319.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Treponema
           phagedenis F0421]
          Length = 203

 Score =  270 bits (692), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 112/196 (57%), Positives = 150/196 (76%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVP V+EQT  GERSYDI+SRLLK+RI+FV G+I D +A LI AQLLFLE++NP K+IS
Sbjct: 7   TLVPYVIEQTGNGERSYDIFSRLLKDRIIFVDGEINDTVADLIVAQLLFLESQNPDKDIS 66

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAG+AIYDTMQ I+P I T C+GQAASM ++LL+ G  G RFALP++R++
Sbjct: 67  LYINSPGGSVTAGLAIYDTMQHIRPKIQTICLGQAASMAAVLLAGGSAGKRFALPSSRVM 126

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQASDI   A++I+++K+   + + ++ GK+ +EV   ++RD  MSA EA 
Sbjct: 127 IHQPWGGVQGQASDISIQAKEIIRLKKLTIKYFAEHTGKSEKEVADDMERDFFMSAEEAK 186

Query: 197 DWGVVDKVLMSRIDIE 212
            +G+VD V+  R + E
Sbjct: 187 AYGIVDTVMNRRKNGE 202


>gi|296232651|ref|XP_002761668.1| PREDICTED: putative ATP-dependent Clp protease proteolytic subunit,
           mitochondrial-like [Callithrix jacchus]
          Length = 273

 Score =  270 bits (692), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 115/195 (58%), Positives = 156/195 (80%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
              L L+P+VVEQT RGER+YDIYSRLL+ERIV V G I+D +A+L+ AQLLFL++E+ +
Sbjct: 49  ARALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNK 108

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K I +YINSPGGVVTAG+AIYDTMQ+I  PI T+C+GQAASMGSLLL+AG  GMR +LPN
Sbjct: 109 KPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPN 168

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           +RI++HQPSGG  GQA+DI   A++I+K+K++L  IY K+  ++ + +E  ++RD  MS 
Sbjct: 169 SRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSP 228

Query: 193 SEACDWGVVDKVLMS 207
            EA ++G++DKVL+ 
Sbjct: 229 MEAQEFGILDKVLVH 243


>gi|56695904|ref|YP_166255.1| ATP-dependent Clp protease proteolytic subunit [Ruegeria pomeroyi
           DSS-3]
 gi|67460175|sp|Q5LUQ0|CLPP_SILPO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|56677641|gb|AAV94307.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ruegeria
           pomeroyi DSS-3]
          Length = 209

 Score =  270 bits (691), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 131/207 (63%), Positives = 166/207 (80%), Gaps = 1/207 (0%)

Query: 10  DSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           D  D ++  LVPMVVEQT+RGER+YDI+SRLLKERI+F+ G I D M+ LI AQLL LEA
Sbjct: 3   DPVDTYMNTLVPMVVEQTSRGERAYDIFSRLLKERIIFINGPIHDGMSHLIVAQLLHLEA 62

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP KEIS+YINSPGGVVT+G++IYDTMQ+IKP  ST  +GQAASMGS+LL+ GEKGMRF
Sbjct: 63  ENPNKEISIYINSPGGVVTSGLSIYDTMQYIKPKCSTLVIGQAASMGSVLLAGGEKGMRF 122

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPN+RI++HQPSGG+ GQASDI  HA +  K+K RL +IYVK+ G+T + VEK LDRD+
Sbjct: 123 SLPNSRIMVHQPSGGYQGQASDIMIHAAETQKLKDRLYDIYVKHTGQTKKAVEKALDRDN 182

Query: 189 IMSASEACDWGVVDKVLMSRIDIEEKS 215
            MS  EA +WG +D+++ SR   ++  
Sbjct: 183 FMSPEEAKEWGHIDEIVESRSKGDDAE 209


>gi|196043546|ref|ZP_03110784.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus 03BB108]
 gi|225864765|ref|YP_002750143.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus 03BB102]
 gi|196025855|gb|EDX64524.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus 03BB108]
 gi|225789001|gb|ACO29218.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus 03BB102]
          Length = 193

 Score =  270 bits (691), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 104/193 (53%), Positives = 139/193 (72%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++P VVEQT  GERSYDIYSRLLK+RIV +  +I D +A+ + AQLLFLEAE+ +K+I
Sbjct: 1   MNVIPYVVEQTKLGERSYDIYSRLLKDRIVIIGSEINDQVASSVVAQLLFLEAEDAEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I
Sbjct: 61  FLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+A EA
Sbjct: 121 MIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMTAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD V+  +
Sbjct: 181 KAYGIVDDVVTKK 193


>gi|221194696|ref|ZP_03567753.1| Clp protease [Atopobium rimae ATCC 49626]
 gi|221185600|gb|EEE17990.1| Clp protease [Atopobium rimae ATCC 49626]
          Length = 206

 Score =  270 bits (691), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 103/194 (53%), Positives = 140/194 (72%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            L+P V+EQT RGERSYDIYSRLL +RIVF+   +    A L+ AQLL LE+++P+K+IS
Sbjct: 8   PLIPYVIEQTPRGERSYDIYSRLLNDRIVFLGEPVTRDSANLVIAQLLHLESQDPEKDIS 67

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYI+SPGG V AG+ I DTM FIKP +ST C+G AASM ++LL+AG KG R ALPN+ +L
Sbjct: 68  LYIDSPGGDVYAGLGILDTMNFIKPDVSTICVGMAASMAAVLLAAGAKGKRLALPNSMVL 127

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPS G  GQ +DI+  A +   +++ LNE+  +  G+  E+V    +RD+ M A EA 
Sbjct: 128 IHQPSSGVQGQQTDIQIVADETKWLRQHLNELLSEYTGQPLEKVNVDTERDNYMRAQEAA 187

Query: 197 DWGVVDKVLMSRID 210
           D+G+VD+V+ SR D
Sbjct: 188 DYGLVDRVISSRND 201


>gi|284929120|ref|YP_003421642.1| ATP-dependent Clp protease proteolytic subunit ClpP [cyanobacterium
           UCYN-A]
 gi|284809579|gb|ADB95284.1| ATP-dependent Clp protease proteolytic subunit ClpP [cyanobacterium
           UCYN-A]
          Length = 214

 Score =  270 bits (691), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 104/190 (54%), Positives = 143/190 (75%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            +VPMVVEQ+  GER++DIYSRLL+ERI+F+   ++D MA  I AQLL+L++E+P+K+I 
Sbjct: 25  NIVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPVDDQMANSIVAQLLYLDSEDPEKDIQ 84

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG V AG+AIYDTM+ I+P I T C G AASMG+ LLS G KG R ALP++RI+
Sbjct: 85  LYINSPGGSVYAGLAIYDTMKQIRPDIVTICFGLAASMGAFLLSGGTKGKRMALPSSRIM 144

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA DI   AQ+I+ IK+RLN +  ++ GK ++ +    +RD  MS+ EA 
Sbjct: 145 IHQPLGGAQGQAVDIAIQAQEILYIKKRLNNMLSEHTGKPFDTIAADTERDFFMSSKEAV 204

Query: 197 DWGVVDKVLM 206
           ++G++DKV+ 
Sbjct: 205 EYGLIDKVIS 214


>gi|139437042|ref|ZP_01771202.1| Hypothetical protein COLAER_00176 [Collinsella aerofaciens ATCC
           25986]
 gi|133776689|gb|EBA40509.1| Hypothetical protein COLAER_00176 [Collinsella aerofaciens ATCC
           25986]
          Length = 210

 Score =  270 bits (691), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 108/208 (51%), Positives = 150/208 (72%), Gaps = 5/208 (2%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           M     AK DS      LVP V+EQT RGERSYDIYSRLL +RI+F+  +I    A L+ 
Sbjct: 1   MEMRMIAKFDS-----ALVPYVIEQTPRGERSYDIYSRLLNDRIIFLGEEINSVSANLVV 55

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLL LE+++ +K+ISLYINSPGG V +G+AI DTM FIKP +ST C+G AASM ++LLS
Sbjct: 56  AQLLHLESQDAEKDISLYINSPGGEVYSGLAILDTMNFIKPQVSTICVGMAASMAAVLLS 115

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF LP++++++HQPSGG  GQ ++IE  A++I K +R LN+I     G+  E+V
Sbjct: 116 AGAKGKRFCLPHSKVMIHQPSGGAQGQQTEIEIVAEEIKKTRRELNQILSDASGQPIEKV 175

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           +   +RD+ ++A EA D+G++D+++ SR
Sbjct: 176 QADTERDNYLTAVEALDYGLIDRIVTSR 203


>gi|228908533|ref|ZP_04072373.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis IBL 200]
 gi|228965727|ref|ZP_04126807.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|229097304|ref|ZP_04228266.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock3-29]
 gi|229103392|ref|ZP_04234074.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock3-28]
 gi|229116300|ref|ZP_04245690.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock1-3]
 gi|228667132|gb|EEL22584.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock1-3]
 gi|228679888|gb|EEL34083.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock3-28]
 gi|228686115|gb|EEL40031.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock3-29]
 gi|228793986|gb|EEM41509.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228851086|gb|EEM95900.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis IBL 200]
          Length = 193

 Score =  270 bits (691), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 103/193 (53%), Positives = 139/193 (72%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ +K+I
Sbjct: 1   MNAIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I
Sbjct: 61  YLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+A EA
Sbjct: 121 MIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMTAEEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD V+  +
Sbjct: 181 KEYGIVDDVVTKK 193


>gi|74188717|dbj|BAE28093.1| unnamed protein product [Mus musculus]
          Length = 269

 Score =  270 bits (691), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 114/191 (59%), Positives = 155/191 (81%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            L+P+VVEQT RGER+YDIYSRLL+ERIV V G I+D +A+L+ AQLLFL++E+ +K I 
Sbjct: 50  PLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIH 109

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGGVVTAG+AIYDTMQ+I  PI T+C+GQAASMGSLLL+AG  GMR +LPN+RI+
Sbjct: 110 MYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIM 169

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  GQA+DI   A++I+K+K++L  IY K+  ++ + +E  ++RD  MS  EA 
Sbjct: 170 IHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQ 229

Query: 197 DWGVVDKVLMS 207
           ++G++DKVL+ 
Sbjct: 230 EFGILDKVLVH 240


>gi|5174419|ref|NP_006003.1| putative ATP-dependent Clp protease proteolytic subunit,
           mitochondrial precursor [Homo sapiens]
 gi|3023512|sp|Q16740|CLPP_HUMAN RecName: Full=Putative ATP-dependent Clp protease proteolytic
           subunit, mitochondrial; AltName: Full=Endopeptidase Clp;
           Flags: Precursor
 gi|62738031|pdb|1TG6|A Chain A, Crystallography And Mutagenesis Point To An Essential Role
           For The N-Terminus Of Human Mitochondrial Clpp
 gi|62738032|pdb|1TG6|B Chain B, Crystallography And Mutagenesis Point To An Essential Role
           For The N-Terminus Of Human Mitochondrial Clpp
 gi|62738033|pdb|1TG6|C Chain C, Crystallography And Mutagenesis Point To An Essential Role
           For The N-Terminus Of Human Mitochondrial Clpp
 gi|62738034|pdb|1TG6|D Chain D, Crystallography And Mutagenesis Point To An Essential Role
           For The N-Terminus Of Human Mitochondrial Clpp
 gi|62738035|pdb|1TG6|E Chain E, Crystallography And Mutagenesis Point To An Essential Role
           For The N-Terminus Of Human Mitochondrial Clpp
 gi|62738036|pdb|1TG6|F Chain F, Crystallography And Mutagenesis Point To An Essential Role
           For The N-Terminus Of Human Mitochondrial Clpp
 gi|62738037|pdb|1TG6|G Chain G, Crystallography And Mutagenesis Point To An Essential Role
           For The N-Terminus Of Human Mitochondrial Clpp
 gi|963048|emb|CAA90705.1| CLPP [Homo sapiens]
 gi|12804197|gb|AAH02956.1| ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit
           homolog (E. coli) [Homo sapiens]
 gi|119589509|gb|EAW69103.1| ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit
           homolog (E. coli) [Homo sapiens]
 gi|123998295|gb|ABM86749.1| ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit
           homolog (E. coli) [synthetic construct]
 gi|157929068|gb|ABW03819.1| ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit
           homolog (E. coli) [synthetic construct]
          Length = 277

 Score =  270 bits (691), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 115/192 (59%), Positives = 156/192 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           L L+P+VVEQT RGER+YDIYSRLL+ERIV V G I+D +A+L+ AQLLFL++E+ +K I
Sbjct: 56  LPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPI 115

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG+AIYDTMQ+I  PI T+C+GQAASMGSLLL+AG  GMR +LPN+RI
Sbjct: 116 HMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRI 175

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+DI   A++I+K+K++L  IY K+  ++ + +E  ++RD  MS  EA
Sbjct: 176 MIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEA 235

Query: 196 CDWGVVDKVLMS 207
            ++G++DKVL+ 
Sbjct: 236 QEFGILDKVLVH 247


>gi|294500553|ref|YP_003564253.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           megaterium QM B1551]
 gi|294350490|gb|ADE70819.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           megaterium QM B1551]
          Length = 193

 Score =  270 bits (691), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 106/193 (54%), Positives = 146/193 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P V+EQ+NRGERSYDIYSRLLK+RI+ +  +I DH+A  + AQLLFL A++P+K+I
Sbjct: 1   MSTIPYVIEQSNRGERSYDIYSRLLKDRIILIGDEINDHIANSVVAQLLFLAADDPKKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG  +AG AIYDTMQ+I+P + T C G AAS G+LLL AG KG R+ALPN+ I
Sbjct: 61  SLYINSPGGSTSAGFAIYDTMQYIEPDVQTICTGMAASFGALLLLAGAKGKRYALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K+K+ +NEI     G+  E+V    +RD+ MSA EA
Sbjct: 121 MIHQPLGGARGQATEIEISARRILKLKQHINEIISTRTGQPVEKVANDTERDYFMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++GV+D +L+ +
Sbjct: 181 KEYGVIDGILLPK 193


>gi|229173439|ref|ZP_04300983.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           MM3]
 gi|228610133|gb|EEK67411.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           MM3]
          Length = 198

 Score =  270 bits (691), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 104/193 (53%), Positives = 139/193 (72%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ +K+I
Sbjct: 6   MNTIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDI 65

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL AG KG RFALPN+ I
Sbjct: 66  FLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGLAASFGALLLLAGAKGKRFALPNSEI 125

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K+K  +N+I     G+  E++    +RD+ M+A EA
Sbjct: 126 MIHQPLGGVKGQATEIEITAKRILKLKHDINKIIADRTGQPIEKIAHDTERDYFMTAEEA 185

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD V+  +
Sbjct: 186 KEYGIVDGVVEKK 198


>gi|165971139|gb|AAI58370.1| clpp protein [Xenopus (Silurana) tropicalis]
          Length = 228

 Score =  270 bits (691), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 114/196 (58%), Positives = 156/196 (79%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
             V   LVP+VVEQT RGER+YDIYSRLL+ERI+ V G I+D +++L+ AQLLFL++E+ 
Sbjct: 9   PPVLSPLVPIVVEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSLVVAQLLFLQSESN 68

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K I +YINSPGG VTAG+AIYDTMQ+I  PI T+C+GQAASMGSLLL+AG  GMR +LP
Sbjct: 69  KKPIHMYINSPGGSVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSSGMRHSLP 128

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+RI++HQPSGG  GQA+DI   A++I+K+K+++NEIY K+  +    +E  ++RD  MS
Sbjct: 129 NSRIMIHQPSGGARGQATDIAIQAEEILKLKKQINEIYAKHTRQPLSVIESVMERDRYMS 188

Query: 192 ASEACDWGVVDKVLMS 207
            +EA ++G++DKVL+ 
Sbjct: 189 PTEAQEFGILDKVLVH 204


>gi|291288695|ref|YP_003505511.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290885855|gb|ADD69555.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 195

 Score =  270 bits (691), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 110/191 (57%), Positives = 152/191 (79%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP V+EQT RGERSYDIYSRLLK+RI+F+  Q+E  +A  I AQ+LFLE+++P K+I LY
Sbjct: 5   VPYVIEQTGRGERSYDIYSRLLKDRIIFLGSQVESGIANSIVAQMLFLESDDPDKDIHLY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG V+ G+AI+DTM++IKP +ST C+GQAASM ++LL+AG KG R+A+PNAR+++H
Sbjct: 65  INSPGGSVSDGLAIFDTMKYIKPDVSTICIGQAASMAAVLLAAGTKGKRYAVPNARVMIH 124

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           Q  GG  GQA+DIE  A++I++IK+ LN+I     GK+YE++EK  DRD+ MSA EA  +
Sbjct: 125 QVMGGAQGQAADIEIQAKEILRIKKILNDILTDATGKSYEKIEKDSDRDYFMSAPEAKAY 184

Query: 199 GVVDKVLMSRI 209
           G++D V+ +R 
Sbjct: 185 GIIDDVITNRA 195


>gi|16804506|ref|NP_465991.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes EGD-e]
 gi|46908640|ref|YP_015029.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes str. 4b F2365]
 gi|47092754|ref|ZP_00230539.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           monocytogenes str. 4b H7858]
 gi|47096060|ref|ZP_00233661.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           monocytogenes str. 1/2a F6854]
 gi|224503291|ref|ZP_03671598.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes FSL R2-561]
 gi|226225016|ref|YP_002759123.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes Clip81459]
 gi|254825410|ref|ZP_05230411.1| protease ClpP [Listeria monocytogenes FSL J1-194]
 gi|254828043|ref|ZP_05232730.1| ATP-dependent Clp protease [Listeria monocytogenes FSL N3-165]
 gi|254831109|ref|ZP_05235764.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes 10403S]
 gi|254853529|ref|ZP_05242877.1| endopeptidase Clp [Listeria monocytogenes FSL R2-503]
 gi|254900394|ref|ZP_05260318.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes J0161]
 gi|254913367|ref|ZP_05263379.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes J2818]
 gi|254932291|ref|ZP_05265650.1| endopeptidase Clp [Listeria monocytogenes HPB2262]
 gi|254937748|ref|ZP_05269445.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes F6900]
 gi|254991680|ref|ZP_05273870.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes FSL J2-064]
 gi|255521328|ref|ZP_05388565.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes FSL J1-175]
 gi|284802906|ref|YP_003414771.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes 08-5578]
 gi|284996047|ref|YP_003417815.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes 08-5923]
 gi|300765033|ref|ZP_07075021.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           monocytogenes FSL N1-017]
 gi|17374630|sp|Q9RQI6|CLPP_LISMO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|60389670|sp|Q71WV9|CLPP_LISMF RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|6166251|gb|AAF04744.1|AF102775_1 protease ClpP [Listeria monocytogenes]
 gi|16411956|emb|CAD00546.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes EGD-e]
 gi|46881912|gb|AAT05206.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|47015521|gb|EAL06453.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           monocytogenes str. 1/2a F6854]
 gi|47018842|gb|EAL09590.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           monocytogenes str. 4b H7858]
 gi|225877478|emb|CAS06192.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258600427|gb|EEW13752.1| ATP-dependent Clp protease [Listeria monocytogenes FSL N3-165]
 gi|258606902|gb|EEW19510.1| endopeptidase Clp [Listeria monocytogenes FSL R2-503]
 gi|258610351|gb|EEW22959.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes F6900]
 gi|284058468|gb|ADB69409.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes 08-5578]
 gi|284061514|gb|ADB72453.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes 08-5923]
 gi|293583848|gb|EFF95880.1| endopeptidase Clp [Listeria monocytogenes HPB2262]
 gi|293591373|gb|EFF99707.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes J2818]
 gi|293594653|gb|EFG02414.1| protease ClpP [Listeria monocytogenes FSL J1-194]
 gi|300514333|gb|EFK41392.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           monocytogenes FSL N1-017]
 gi|328465333|gb|EGF36590.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes 1816]
 gi|328471278|gb|EGF42178.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes 220]
          Length = 198

 Score =  270 bits (691), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 106/197 (53%), Positives = 151/197 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT+RGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL+A++P+K+I
Sbjct: 1   MNLIPTVIEQTSRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG ++AGMAIYDTM F+K  + T  MG AASMGS LL+AG  G RFALPNA I
Sbjct: 61  FLYINSPGGSISAGMAIYDTMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+KIK R+N I  +  G+ YE + +  DRD+ M+A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAARHILKIKERMNTIMAEKTGQPYEVIARDTDRDNFMTAQEA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
            D+G++D +++++  ++
Sbjct: 181 KDYGLIDDIIINKSGLK 197


>gi|20129427|ref|NP_609388.1| CG5045 [Drosophila melanogaster]
 gi|7297671|gb|AAF52923.1| CG5045 [Drosophila melanogaster]
 gi|21428864|gb|AAM50151.1| GH10833p [Drosophila melanogaster]
 gi|220944040|gb|ACL84563.1| CG5045-PA [synthetic construct]
 gi|220954028|gb|ACL89557.1| CG5045-PA [synthetic construct]
 gi|223966793|emb|CAR93133.1| CG5045-PA [Drosophila melanogaster]
          Length = 253

 Score =  270 bits (691), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 122/211 (57%), Positives = 161/211 (76%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           +S   C  + +    + L+PMVVEQT RGER+YDI+SRLLKERI+ + G I D +++ + 
Sbjct: 12  ISSVQCGGRANSVRNINLIPMVVEQTGRGERAYDIFSRLLKERIICLMGNITDDISSTVV 71

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFL++EN  K I LYINSPGGVVTAG+AIYDTMQ++KPPI+T+C+GQA SMGSLLL+
Sbjct: 72  AQLLFLQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPIATWCVGQACSMGSLLLA 131

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG  GMR++LPNARI++HQPSGG  GQA+DI  HA++I+KIKR+L  IYVK+   TYEE+
Sbjct: 132 AGAPGMRYSLPNARIMIHQPSGGAQGQATDILIHAEEIIKIKRQLTNIYVKHAKNTYEEM 191

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
              ++RDH M+  EA   G++D VL    + 
Sbjct: 192 SGRMERDHFMTPEEAKVLGIIDHVLEHPPET 222


>gi|217963429|ref|YP_002349107.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           monocytogenes HCC23]
 gi|290893656|ref|ZP_06556637.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes FSL J2-071]
 gi|217332699|gb|ACK38493.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           monocytogenes HCC23]
 gi|290556729|gb|EFD90262.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes FSL J2-071]
 gi|307571996|emb|CAR85175.1| ATP-dependent Clp protease, proteolytic subunit [Listeria
           monocytogenes L99]
          Length = 198

 Score =  270 bits (691), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 106/197 (53%), Positives = 151/197 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT+RGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL+A++P+K+I
Sbjct: 1   MNLIPTVIEQTSRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG ++AGMAIYDTM F+K  + T  MG AASMGS LL+AG  G RFALPNA I
Sbjct: 61  FLYINSPGGSISAGMAIYDTMNFVKADVQTIGMGMAASMGSFLLTAGASGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+KIK R+N I  +  G+ YE + +  DRD+ M+A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAARHILKIKERMNTIMAEKTGQPYEVIARDTDRDNFMTAQEA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
            D+G++D +++++  ++
Sbjct: 181 KDYGLIDDIIINKSGLK 197


>gi|332186782|ref|ZP_08388524.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sphingomonas
           sp. S17]
 gi|332013115|gb|EGI55178.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sphingomonas
           sp. S17]
          Length = 229

 Score =  270 bits (691), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 121/194 (62%), Positives = 160/194 (82%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
            GLVP+V+EQ+NRGERS+DI+SRLL+ERI+FVTG +ED MA+LICAQLLFLE+ENP+K+I
Sbjct: 26  AGLVPIVIEQSNRGERSFDIFSRLLRERIIFVTGGVEDGMASLICAQLLFLESENPKKDI 85

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAGMAI+DTMQ+I+P + T C+GQAASMGS LL+AGE GMR A  N+RI
Sbjct: 86  YMYINSPGGVVTAGMAIHDTMQYIRPRVGTLCIGQAASMGSFLLAAGEPGMRVATTNSRI 145

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  G A+DIE  A++I++++  LN +Y K  GK  EE+E+ +DRD  MS+ EA
Sbjct: 146 MIHQPSGGAQGMAADIEIQAREILRMRHFLNSLYAKYTGKPLEEIERAMDRDKFMSSEEA 205

Query: 196 CDWGVVDKVLMSRI 209
            ++G++D+V   R 
Sbjct: 206 KEFGLIDQVFDKRP 219


>gi|221065471|ref|ZP_03541576.1| Endopeptidase Clp [Comamonas testosteroni KF-1]
 gi|220710494|gb|EED65862.1| Endopeptidase Clp [Comamonas testosteroni KF-1]
          Length = 201

 Score =  270 bits (690), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 118/194 (60%), Positives = 155/194 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQ+ RGERS+DIYSRLL++R++F+ G++ D ++ L+CAQLLFLEAENP K I
Sbjct: 5   MMLVPMVVEQSARGERSFDIYSRLLRDRVIFLNGEVNDAVSALVCAQLLFLEAENPDKPI 64

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+T+G+A+YDTMQFIK P+ T CMG A SMGS LL AGE G R ALPNA +
Sbjct: 65  HLYINSPGGVITSGLAMYDTMQFIKSPVHTLCMGTARSMGSFLLMAGEPGHRMALPNASL 124

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
            +HQP GG  GQASDI  HA+++++ K R+  +Y ++CG++Y+EVE+ LDRD  M+A EA
Sbjct: 125 HVHQPLGGVQGQASDIRIHAEEMLRTKDRVTRLYAQHCGRSYQEVERDLDRDRFMTAKEA 184

Query: 196 CDWGVVDKVLMSRI 209
            +WG++DKVL  R 
Sbjct: 185 REWGLIDKVLDRRT 198


>gi|118478148|ref|YP_895299.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bacillus
           thuringiensis str. Al Hakam]
 gi|118417373|gb|ABK85792.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bacillus
           thuringiensis str. Al Hakam]
          Length = 198

 Score =  270 bits (690), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 104/193 (53%), Positives = 139/193 (72%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++P VVEQT  GERSYDIYSRLLK+RIV +  +I D +A+ + AQLLFLEAE+ +K+I
Sbjct: 6   MNVIPYVVEQTKLGERSYDIYSRLLKDRIVIIGSEINDQVASSVVAQLLFLEAEDAEKDI 65

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I
Sbjct: 66  FLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEI 125

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+A EA
Sbjct: 126 MIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMTAEEA 185

Query: 196 CDWGVVDKVLMSR 208
             +G+VD V+  +
Sbjct: 186 KAYGIVDDVVTKK 198


>gi|116070498|ref|ZP_01467767.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           BL107]
 gi|116065903|gb|EAU71660.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           BL107]
          Length = 197

 Score =  270 bits (690), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 98/192 (51%), Positives = 136/192 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+E++ RGER++DIYSRLL+ERI+F+   +    A  I AQ+LFLEAE+P+K+I L
Sbjct: 1   MIPIVIEESGRGERAFDIYSRLLRERIIFLGEAVTSDSANRIVAQMLFLEAEDPEKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I+DTMQ IKP + T C+G AASMG+ LL AG KG R +L ++RI++
Sbjct: 61  YINSPGGSVYDGLGIFDTMQHIKPDVQTVCVGLAASMGAFLLCAGTKGKRSSLQHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG SGQASDI   A +I+ +K RLN       G+  + +++  DRD  MS SEA  
Sbjct: 121 HQPLGGASGQASDIRIQADEILYLKDRLNTELSDRTGQPLDRIQEDTDRDFFMSPSEAVS 180

Query: 198 WGVVDKVLMSRI 209
           +G++D V+  R 
Sbjct: 181 YGLIDSVIDKRP 192


>gi|189065189|dbj|BAG34912.1| unnamed protein product [Homo sapiens]
          Length = 277

 Score =  270 bits (690), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 115/192 (59%), Positives = 156/192 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           L L+P+VVEQT RGER+YDIYSRLL+ERIV V G I+D +A+L+ AQLLFL++E+ +K I
Sbjct: 56  LPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESSKKPI 115

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG+AIYDTMQ+I  PI T+C+GQAASMGSLLL+AG  GMR +LPN+RI
Sbjct: 116 HMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRI 175

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+DI   A++I+K+K++L  IY K+  ++ + +E  ++RD  MS  EA
Sbjct: 176 MIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEA 235

Query: 196 CDWGVVDKVLMS 207
            ++G++DKVL+ 
Sbjct: 236 QEFGILDKVLVH 247


>gi|320120411|gb|EFE27574.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Filifactor
           alocis ATCC 35896]
 gi|320120478|gb|ADW16163.1| hypothetical protein HMPREF0389_01718 [Filifactor alocis ATCC
           35896]
          Length = 196

 Score =  270 bits (690), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 105/192 (54%), Positives = 149/192 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP+VVEQ+ RGERSYDIYSRLLK+RI+F++ ++ D  ++L+ AQ+LFLEAE+P K+I
Sbjct: 3   MAYVPVVVEQSGRGERSYDIYSRLLKDRIIFLSDEVNDVTSSLVVAQMLFLEAEDPDKDI 62

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG +T+GMAI+DTMQ+IK  + T C+G AASMG+ LL+AGEKG R+ALPNA +
Sbjct: 63  MFYINSPGGSITSGMAIFDTMQYIKCDVCTICIGMAASMGAFLLAAGEKGKRYALPNAEV 122

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+  A+ I+K+K +LN I  +  G+  E ++   +RD+ MSA EA
Sbjct: 123 MIHQPLGGAQGQATDIQIQAERILKMKDKLNIILAERTGQNLETIKNDTERDNFMSAEEA 182

Query: 196 CDWGVVDKVLMS 207
            ++G++DKV+  
Sbjct: 183 KEYGLIDKVIEK 194


>gi|206973614|ref|ZP_03234532.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus H3081.97]
 gi|206747770|gb|EDZ59159.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus H3081.97]
          Length = 193

 Score =  270 bits (690), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 104/193 (53%), Positives = 139/193 (72%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ +K+I
Sbjct: 1   MNAIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL AG KG RFALPN+ I
Sbjct: 61  FLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGLAASFGALLLLAGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K+K  +N+I     G+  E++    +RD+ M+A EA
Sbjct: 121 MIHQPLGGVKGQATEIEITAKRILKLKHDINKIIADRTGQPIEKIAHDTERDYFMTAEEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD V+  +
Sbjct: 181 KEYGIVDGVVEKK 193


>gi|110596915|ref|ZP_01385205.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Chlorobium
           ferrooxidans DSM 13031]
 gi|110341602|gb|EAT60062.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Chlorobium
           ferrooxidans DSM 13031]
          Length = 225

 Score =  270 bits (690), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 101/204 (49%), Positives = 155/204 (75%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           + +   LVPMV+E + RGER++DI+SRLL+ERI+F+   I++H+A LI AQL+FLE+E+P
Sbjct: 22  QGITNTLVPMVIETSGRGERAFDIFSRLLRERIIFLGNGIDEHVAGLIMAQLIFLESEDP 81

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +++I +YINSPGG V+AG+ IYDTMQ+I+P +ST C+G AASMG+ LL++G KG R +LP
Sbjct: 82  ERDIYIYINSPGGSVSAGLGIYDTMQYIRPDVSTVCVGMAASMGAFLLASGAKGKRASLP 141

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           ++RI++HQPSGG  GQ +DI   A++I KI++ L+E+  ++ GK  +++ +  +RD  M+
Sbjct: 142 HSRIMIHQPSGGAHGQETDIIIQAREIEKIRKLLDELLARHTGKDVKQIREDSERDRWMN 201

Query: 192 ASEACDWGVVDKVLMSRIDIEEKS 215
           A EA ++G++D V   R   E+K 
Sbjct: 202 AEEALEYGIIDSVFEKRPMPEKKD 225


>gi|8393156|ref|NP_059089.1| putative ATP-dependent Clp protease proteolytic subunit,
           mitochondrial precursor [Mus musculus]
 gi|5921799|sp|O88696|CLPP_MOUSE RecName: Full=Putative ATP-dependent Clp protease proteolytic
           subunit, mitochondrial; AltName: Full=Endopeptidase Clp;
           Flags: Precursor
 gi|3559935|emb|CAA06443.1| ClpP protease [Mus musculus]
 gi|4454289|emb|CAA09966.1| ClpP protease [Mus musculus]
 gi|12805083|gb|AAH01998.1| Caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog
           (E. coli) [Mus musculus]
 gi|12835038|dbj|BAB23132.1| unnamed protein product [Mus musculus]
 gi|74207567|dbj|BAE40033.1| unnamed protein product [Mus musculus]
 gi|74217075|dbj|BAE26636.1| unnamed protein product [Mus musculus]
 gi|148706268|gb|EDL38215.1| caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog
           (E. coli) [Mus musculus]
          Length = 272

 Score =  270 bits (690), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 114/191 (59%), Positives = 155/191 (81%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            L+P+VVEQT RGER+YDIYSRLL+ERIV V G I+D +A+L+ AQLLFL++E+ +K I 
Sbjct: 53  PLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIH 112

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGGVVTAG+AIYDTMQ+I  PI T+C+GQAASMGSLLL+AG  GMR +LPN+RI+
Sbjct: 113 MYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIM 172

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  GQA+DI   A++I+K+K++L  IY K+  ++ + +E  ++RD  MS  EA 
Sbjct: 173 IHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQ 232

Query: 197 DWGVVDKVLMS 207
           ++G++DKVL+ 
Sbjct: 233 EFGILDKVLVH 243


>gi|30020914|ref|NP_832545.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           ATCC 14579]
 gi|218233818|ref|YP_002367506.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus B4264]
 gi|296503329|ref|YP_003665029.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis BMB171]
 gi|67460526|sp|Q81CH1|CLPP1_BACCR RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|29896467|gb|AAP09746.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           ATCC 14579]
 gi|218161775|gb|ACK61767.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus B4264]
 gi|296324381|gb|ADH07309.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis BMB171]
          Length = 193

 Score =  270 bits (690), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 103/193 (53%), Positives = 138/193 (71%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ +K+I
Sbjct: 1   MNTIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I
Sbjct: 61  YLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+A EA
Sbjct: 121 MIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMTAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD V+  +
Sbjct: 181 KAYGIVDDVVTKK 193


>gi|253577702|ref|ZP_04855005.1| clp protease [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251842907|gb|EES70953.1| clp protease [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 196

 Score =  270 bits (690), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 105/192 (54%), Positives = 139/192 (72%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
              ++P V+EQT RGERSYDIYSRLLK+RIVF+   I+D +A  I AQ+LFL AE+P+K+
Sbjct: 1   MSSVIPYVIEQTGRGERSYDIYSRLLKDRIVFLGSAIDDQVANSIMAQMLFLAAEDPEKD 60

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I  YINSPGG  +AG AIYDTMQ++KP + T C G AAS  ++LL AG KG RFALPN+ 
Sbjct: 61  IYFYINSPGGSTSAGFAIYDTMQYVKPDVQTICSGMAASFAAILLMAGAKGKRFALPNSE 120

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQP GG  GQASDI   A  I++ +  LN I  +  G+  E +EK +DRD+ MSA E
Sbjct: 121 IMIHQPHGGAQGQASDIAISANRILRTRAVLNTIAAECTGQPLERIEKDMDRDYFMSADE 180

Query: 195 ACDWGVVDKVLM 206
           A ++G++D+V+ 
Sbjct: 181 AREYGIIDQVIT 192


>gi|157825907|ref|YP_001493627.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia akari
           str. Hartford]
 gi|166214704|sp|A8GNZ4|CLPP_RICAH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|157799865|gb|ABV75119.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia akari
           str. Hartford]
          Length = 201

 Score =  270 bits (690), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 122/193 (63%), Positives = 163/193 (84%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP+V+EQT+RGER+YDIYSRLLKERI+FV   +EDHMA LI AQLLFLEAENP+K++
Sbjct: 1   MSYVPIVIEQTSRGERAYDIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAENPKKDV 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG+AIYDTMQ+IKP ++T C+GQA SMGSLLL  G +GMR++LP++RI
Sbjct: 61  YMYINSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSLLLCGGTQGMRYSLPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG+ GQA+DIE HAQ+ +KIKR LNE+Y K+ G+  + +EK+++RD+ MS  EA
Sbjct: 121 MIHQPSGGYKGQATDIEIHAQETLKIKRLLNELYSKHTGQELKHIEKSMERDNFMSPEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D ++ SR
Sbjct: 181 KKFGIIDNIISSR 193


>gi|182414555|ref|YP_001819621.1| endopeptidase Clp [Opitutus terrae PB90-1]
 gi|177841769|gb|ACB76021.1| Endopeptidase Clp [Opitutus terrae PB90-1]
          Length = 206

 Score =  270 bits (690), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 113/195 (57%), Positives = 152/195 (77%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP+V+E T RGERS DIYSRLLK+RI+F+   I+D +A L+ AQ+ FL+ E+P+K+I LY
Sbjct: 5   VPIVLENTGRGERSMDIYSRLLKDRIIFIGSPIDDTVANLVIAQMFFLQMEDPKKDIQLY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGVVT GMAIYDTM F++  I T+C+G AASM ++LLSAG KG RFALPN+R+++H
Sbjct: 65  INSPGGVVTGGMAIYDTMNFLQCDIVTYCVGMAASMSTVLLSAGTKGKRFALPNSRVMIH 124

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  GQA+DI   A++I++ ++ LNE+  K+ GKT E+VEK  DRD+ MSA EA D+
Sbjct: 125 QPSGGAGGQAADIAIAAKEILRWRKTLNEVIAKHTGKTPEQVEKDSDRDYYMSAQEAKDY 184

Query: 199 GVVDKVLMSRIDIEE 213
           G+VD V+ S  + + 
Sbjct: 185 GIVDHVVESTREAQS 199


>gi|33240370|ref|NP_875312.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
 gi|67460522|sp|Q7VC22|CLPP1_PROMA RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|33237897|gb|AAP99964.1| Protease subunit of ATP-dependent Clp protease [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
          Length = 196

 Score =  270 bits (690), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 99/192 (51%), Positives = 136/192 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+VVE+T RGER++DIYSRLL+ERIVF+  Q+ +  A  I AQLLFLEAE+P+K+I L
Sbjct: 1   MIPIVVEETGRGERAFDIYSRLLRERIVFLGEQVTNDSANRIVAQLLFLEAEDPEKDIFL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G  I+DT+Q IKP + T C+G AASMG+ LL AG KG R +L ++RI++
Sbjct: 61  YINSPGGSVYDGFGIFDTIQHIKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DI   A +I+ +K++LN       G+   ++ +  DRD  MS SEA  
Sbjct: 121 HQPLGGARGQATDIRIQADEILFLKQKLNTELSNRTGQPLSKIAEDTDRDFYMSPSEAIS 180

Query: 198 WGVVDKVLMSRI 209
           +G++D VL  + 
Sbjct: 181 YGIIDNVLNKKP 192


>gi|195578155|ref|XP_002078931.1| GD23683 [Drosophila simulans]
 gi|194190940|gb|EDX04516.1| GD23683 [Drosophila simulans]
          Length = 253

 Score =  270 bits (690), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 122/211 (57%), Positives = 161/211 (76%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           +S   C  + +    + L+PMVVEQT RGER+YDI+SRLLKERI+ + G I D +++ + 
Sbjct: 12  ISSAQCGGRANSVRNINLIPMVVEQTGRGERAYDIFSRLLKERIICLMGNITDDISSTVV 71

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFL++EN  K I LYINSPGGVVTAG+AIYDTMQ++KPPI+T+C+GQA SMGSLLL+
Sbjct: 72  AQLLFLQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPIATWCVGQACSMGSLLLA 131

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG  GMR++LPNARI++HQPSGG  GQA+DI  HA++I+KIKR+L  IYVK+   TYEE+
Sbjct: 132 AGAPGMRYSLPNARIMIHQPSGGAQGQATDILIHAEEIIKIKRQLTNIYVKHAKNTYEEM 191

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
              ++RDH M+  EA   G++D VL    + 
Sbjct: 192 CGRMERDHFMTPEEAKVLGIIDHVLEHPPET 222


>gi|15615680|ref|NP_243984.1| ATP-dependent Clp protease proteolytic subunit [Bacillus halodurans
           C-125]
 gi|18203165|sp|Q9K888|CLPP2_BACHD RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|10175740|dbj|BAB06837.1| ATP-dependent Clp protease proteolytic subunit [Bacillus halodurans
           C-125]
          Length = 194

 Score =  270 bits (690), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 110/191 (57%), Positives = 143/191 (74%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G VP V+EQ+   ERSYDIYSRLLK+RIVF+   I+D +A  I AQLLFLEAENP+K+I 
Sbjct: 3   GYVPYVIEQSGLSERSYDIYSRLLKDRIVFLGAAIDDQIANSIVAQLLFLEAENPKKDIY 62

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG  +AG AIYDTMQF+KP I T C G AAS  ++LL AG KG RFALPN+ I+
Sbjct: 63  LYINSPGGSTSAGFAIYDTMQFVKPSIHTICTGMAASFAAILLLAGTKGKRFALPNSEIM 122

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  GQASD+   A+ I+ I+ +L  +  +  G++ E+V K +DRD+ MSA EA 
Sbjct: 123 IHQPSGGAQGQASDLAITAKRILGIREKLVTVTSERTGQSPEKVAKDMDRDYFMSAEEAL 182

Query: 197 DWGVVDKVLMS 207
           ++G+VD+++ S
Sbjct: 183 EYGIVDQIITS 193


>gi|259047276|ref|ZP_05737677.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Granulicatella adiacens ATCC 49175]
 gi|259036052|gb|EEW37307.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Granulicatella adiacens ATCC 49175]
          Length = 197

 Score =  270 bits (690), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 111/197 (56%), Positives = 151/197 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQ++RGER+YDIYSRLLK+RI+ V+G I+D MA  I AQLLFL+A++P+K+I
Sbjct: 1   MNLIPTVIEQSSRGERAYDIYSRLLKDRIIMVSGPIQDDMANAIIAQLLFLDAQDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG VTAG+AIYDTM FIK  + T  MG AASMGS LL+AG KG R+ALPNA I
Sbjct: 61  YMYINSPGGSVTAGLAIYDTMNFIKADVQTIAMGLAASMGSFLLTAGAKGKRYALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQP GG  GQA++IE  A+ I+K + RLN+I  K  G+    +EK  DRD+ M+A EA
Sbjct: 121 LIHQPLGGAQGQATEIEIAARQILKTRERLNKILAKQTGQKLSRIEKDTDRDNYMTAQEA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G++D ++ S  +++
Sbjct: 181 LEYGLIDAIMESSKEMK 197


>gi|124025671|ref|YP_001014787.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus str. NATL1A]
 gi|123960739|gb|ABM75522.1| Clp protease subunit [Prochlorococcus marinus str. NATL1A]
          Length = 205

 Score =  270 bits (690), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 99/199 (49%), Positives = 137/199 (68%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
           ++  +  ++P+V+E++ RGER++DIYSRLL+ERIVF+   +    A  I AQLLFLEA++
Sbjct: 3   TDHYYRSMIPIVIEESGRGERAFDIYSRLLRERIVFLGEPVTSDSANRIVAQLLFLEADD 62

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
           P K+I LYINSPGG V  G+ I+DTMQ +KP I T C+G AASMG+ LL AG KG R +L
Sbjct: 63  PDKDIFLYINSPGGSVYDGLGIFDTMQHVKPDIHTVCVGLAASMGAFLLCAGAKGKRSSL 122

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
            ++RI++HQP GG  GQASDI   A +I+ IK +LN+      G+  E + +  DRD  M
Sbjct: 123 LHSRIMIHQPLGGARGQASDIRIQADEILFIKDKLNKELSDRTGQPIERIREDTDRDFYM 182

Query: 191 SASEACDWGVVDKVLMSRI 209
           S SEA ++G++D V   R 
Sbjct: 183 SPSEAIEYGIIDNVFNKRP 201


>gi|329922862|ref|ZP_08278378.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Paenibacillus sp. HGF5]
 gi|328941635|gb|EGG37920.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Paenibacillus sp. HGF5]
          Length = 193

 Score =  269 bits (689), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 109/192 (56%), Positives = 142/192 (73%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP VVEQTNRGERSYDIYSRLLK+RIVFV   I+D +A  I AQLLFL AE+P+K+I
Sbjct: 1   MNFVPYVVEQTNRGERSYDIYSRLLKDRIVFVGAAIDDAIANSIIAQLLFLAAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG V+AG  IYDTMQ IKP ++T C G AAS G++LL AG KG R ALPN+ I
Sbjct: 61  HMYINSPGGSVSAGFGIYDTMQIIKPQVNTICTGFAASYGAILLLAGAKGKRLALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI   A+ I+K + +L  I  +  G++ E VEK ++RD+ MSA EA
Sbjct: 121 MIHQPLGGVQGQATDIAITAKRILKTREKLAHIISERTGQSVERVEKDMERDYFMSAEEA 180

Query: 196 CDWGVVDKVLMS 207
            ++G++D ++  
Sbjct: 181 KEYGIIDDIVTK 192


>gi|326427885|gb|EGD73455.1| ATP-dependent Clp protease proteolytic subunit [Salpingoeca sp.
           ATCC 50818]
          Length = 267

 Score =  269 bits (689), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 108/193 (55%), Positives = 158/193 (81%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVP+V+EQT+RGER+YDI+SRLL+ERIV + G + D +++LI AQLL+LE+ENP++ I 
Sbjct: 58  SLVPIVIEQTHRGERAYDIFSRLLRERIVCLMGPVNDELSSLITAQLLYLESENPEETIH 117

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VTAG+ IYDTMQ++KP I+T C+GQA SMGSLLL+AG KG R+ALP++RI+
Sbjct: 118 MYINSPGGSVTAGLGIYDTMQYVKPKIATLCVGQACSMGSLLLTAGAKGHRYALPHSRIM 177

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  GQA+DI+  A++I+K+K  + +IYV++ G+ +  +  +L+RD  +SA EA 
Sbjct: 178 VHQPSGGAYGQATDIQIQAEEILKLKNTICDIYVQHTGQPHSVIYDSLERDKFLSAGEAS 237

Query: 197 DWGVVDKVLMSRI 209
           ++G++D+V+ +R 
Sbjct: 238 EFGLIDEVVATRK 250


>gi|322383234|ref|ZP_08057045.1| ATP-dependent Clp protease proteolytic subunit-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321152503|gb|EFX45289.1| ATP-dependent Clp protease proteolytic subunit-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 191

 Score =  269 bits (689), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 113/192 (58%), Positives = 154/192 (80%), Gaps = 1/192 (0%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MVVEQ  RGERSYDIYSRLLK+RI+F+   I+D +  L+ AQLLFL A++  K+I LYIN
Sbjct: 1   MVVEQEARGERSYDIYSRLLKDRIIFIGSAIDDDVVNLVIAQLLFLSAQDADKDIHLYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGG VTAG+ IYDTMQ+IKP +ST C+G AASMGSLLL+AG KG RFALPN+ +++HQP
Sbjct: 61  SPGGSVTAGLGIYDTMQYIKPDVSTICVGMAASMGSLLLTAGAKGKRFALPNSEVMIHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            GG  GQA+DI+ HA  I+K +++LNEIYV + G+TY++++K  DRD+ +SA +A ++G+
Sbjct: 121 LGGVRGQAADIKIHADWILKTRKKLNEIYVHHTGQTYDKIDKDTDRDNFLSALDAKEYGL 180

Query: 201 VDKVLMSRIDIE 212
           +D+V+  R D++
Sbjct: 181 IDEVIT-RSDLK 191


>gi|195473623|ref|XP_002089092.1| GE18928 [Drosophila yakuba]
 gi|194175193|gb|EDW88804.1| GE18928 [Drosophila yakuba]
          Length = 253

 Score =  269 bits (689), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 121/206 (58%), Positives = 159/206 (77%)

Query: 6   CAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF 65
           C  + +    + L+PMVVEQT RGER+YDI+SRLLKERI+ + G I D +++ + AQLLF
Sbjct: 17  CGSRANSVRNINLIPMVVEQTGRGERAYDIFSRLLKERIICLMGNITDDISSTVVAQLLF 76

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L++EN  K I LYINSPGGVVTAG+AIYDTMQ++KPPI+T+C+GQA SMGSLLL+AG  G
Sbjct: 77  LQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPIATWCVGQACSMGSLLLAAGAPG 136

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
           MR++LPNARI++HQPSGG  GQA+DI  HA++I+KIKR+L  IYVK+   TYEE+   ++
Sbjct: 137 MRYSLPNARIMIHQPSGGAQGQATDILIHAEEIIKIKRQLTNIYVKHAKNTYEEMCGRME 196

Query: 186 RDHIMSASEACDWGVVDKVLMSRIDI 211
           RDH M+  EA   G++D VL    + 
Sbjct: 197 RDHFMTPEEAKVLGIIDHVLEHPPET 222


>gi|78184632|ref|YP_377067.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           CC9902]
 gi|124013818|sp|Q3AY04|CLPP1_SYNS9 RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|78168926|gb|ABB26023.1| ATP-dependent Clp protease proteolytic subunit ClpP [Synechococcus
           sp. CC9902]
          Length = 197

 Score =  269 bits (689), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 97/192 (50%), Positives = 135/192 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+E++ RGER++DIYSRLL+ERI+F+   +    A  I AQ+LFLEAE+P+K+I L
Sbjct: 1   MIPIVIEESGRGERAFDIYSRLLRERIIFLGEAVTSDSANRIVAQMLFLEAEDPEKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I+DTMQ IKP + T C+G AASMG+ LL AG KG R +L ++RI++
Sbjct: 61  YINSPGGSVYDGLGIFDTMQHIKPDVQTVCVGLAASMGAFLLCAGTKGKRSSLQHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG SGQASDI   A +I+ +K RLN       G+  + +++  DRD  MS  EA  
Sbjct: 121 HQPLGGASGQASDIRIQADEILYLKDRLNTELSDRTGQPLDRIQEDTDRDFFMSPGEAVS 180

Query: 198 WGVVDKVLMSRI 209
           +G++D V+  R 
Sbjct: 181 YGLIDSVIDKRP 192


>gi|190892539|ref|YP_001979081.1| endopeptidase Clp protein, subunit 1 [Rhizobium etli CIAT 652]
 gi|218516193|ref|ZP_03513033.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli
           8C-3]
 gi|190697818|gb|ACE91903.1| endopeptidase Clp protein, subunit 1 [Rhizobium etli CIAT 652]
          Length = 203

 Score =  269 bits (689), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 119/196 (60%), Positives = 159/196 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMV+EQ++RGERS+DIYSRLL+ERI+F+ G++ D ++ L+CAQLLFLEAENP K I
Sbjct: 5   MQLVPMVIEQSSRGERSFDIYSRLLRERIIFLNGEVNDTVSALVCAQLLFLEAENPNKPI 64

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGG VT+G+A+YDTM+FI  P+ T CMG A SMGS LL AGE G R ALPNA I
Sbjct: 65  NLYINSPGGAVTSGLAMYDTMRFIHAPVHTLCMGTARSMGSFLLMAGEPGERAALPNASI 124

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQPSGGF GQASD+  HA++I+K K+R+  +Y ++CG++YE+ E+ +DRD  M+A EA
Sbjct: 125 LIHQPSGGFQGQASDMLIHAEEILKTKQRMTRLYAEHCGRSYEDFERGMDRDRFMTAEEA 184

Query: 196 CDWGVVDKVLMSRIDI 211
            +WG++D++L  R D 
Sbjct: 185 LEWGLIDRILKVREDT 200


>gi|329850562|ref|ZP_08265407.1| clp protease family protein [Asticcacaulis biprosthecum C19]
 gi|328840877|gb|EGF90448.1| clp protease family protein [Asticcacaulis biprosthecum C19]
          Length = 208

 Score =  269 bits (689), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 126/203 (62%), Positives = 161/203 (79%), Gaps = 1/203 (0%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           +D  D     L+P V+EQ++RGER+YDIYSR+LKERI+F+TG  ED MAT ICAQLLFLE
Sbjct: 2   RDPVDNLTSYLIPTVIEQSSRGERAYDIYSRMLKERIIFLTGPFEDGMATSICAQLLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           +ENP+KEIS+YINSPGG VT+ +AIYDTMQ+IK P++T CMG AAS GSL+L AGE G R
Sbjct: 62  SENPKKEISMYINSPGGQVTSALAIYDTMQYIKSPVTTVCMGMAASAGSLILQAGENGQR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
            +LPN++I++HQPSGG  G ASDIE  A+D+ K K+ LNEIYVK+ G+ YE +E+TLDRD
Sbjct: 122 ISLPNSKIMVHQPSGGARGMASDIEIQAEDMRKTKKLLNEIYVKHTGQPYEVIERTLDRD 181

Query: 188 HIMSASEACDWGVVDKVLMSRID 210
             M+A EA ++G++D V   R D
Sbjct: 182 RYMTAEEAKEFGLIDHVYEKRAD 204


>gi|307151649|ref|YP_003887033.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
           sp. PCC 7822]
 gi|306981877|gb|ADN13758.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
           sp. PCC 7822]
          Length = 228

 Score =  269 bits (689), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 105/197 (53%), Positives = 150/197 (76%), Gaps = 1/197 (0%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            +VP+V+EQ+  GER++DIYSRLL+ERIVF+   I+D++A  I AQLL+L+AE+P+K+I 
Sbjct: 25  NIVPVVIEQSGMGERAFDIYSRLLRERIVFLGTAIDDNVADSIVAQLLYLDAEDPEKDIQ 84

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG V AG+AIYDTMQ I+P + T C G AASMG+ LLS G KG R ALP+ARI+
Sbjct: 85  LYINSPGGSVYAGLAIYDTMQQIRPDVVTICFGLAASMGAFLLSGGTKGKRMALPSARIM 144

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA +I+  A++I+ IK+RLN +  ++ G+ YE + +  +RD  MS  +A 
Sbjct: 145 IHQPIGGAQGQAVEIDIQAKEILYIKQRLNSLLAEHTGQPYERIAEDTERDFYMSVHDAK 204

Query: 197 DWGVVDKVLMSRIDIEE 213
           D+G++D+V+ SR ++ +
Sbjct: 205 DYGLIDQVI-SRSELPD 220


>gi|114051824|ref|NP_001039879.1| putative ATP-dependent Clp protease proteolytic subunit,
           mitochondrial precursor [Bos taurus]
 gi|118572228|sp|Q2KHU4|CLPP_BOVIN RecName: Full=Putative ATP-dependent Clp protease proteolytic
           subunit, mitochondrial; AltName: Full=Endopeptidase Clp;
           Flags: Precursor
 gi|86826474|gb|AAI12881.1| ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit
           homolog (E. coli) [Bos taurus]
 gi|296485755|gb|DAA27870.1| caseinolytic peptidase, ATP-dependent, proteolytic subunit
           precursor [Bos taurus]
          Length = 272

 Score =  269 bits (689), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 114/195 (58%), Positives = 156/195 (80%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
              L L+P+VVEQT RGER+YDIYSRLL+ERIV V G I+D +A+L+ AQLLFL++E+ +
Sbjct: 49  ARALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNK 108

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K I +YINSPGGVVT+G+AIYDTMQ+I  PI T+C+GQAASMGSLLL+AG  GMR +LPN
Sbjct: 109 KPIHMYINSPGGVVTSGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPN 168

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           +RI++HQPSGG  GQA+DI   A++I+K+K++L  IY K+  ++ + +E  ++RD  MS 
Sbjct: 169 SRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYSIYAKHTKQSLQVIESAMERDRYMSP 228

Query: 193 SEACDWGVVDKVLMS 207
            EA ++G++DKVL+ 
Sbjct: 229 MEAQEFGILDKVLVH 243


>gi|319783748|ref|YP_004143224.1| endopeptidase Clp [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317169636|gb|ADV13174.1| Endopeptidase Clp [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 201

 Score =  269 bits (689), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 127/196 (64%), Positives = 158/196 (80%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
              LVPMV+EQ++RGER++DI+SRLL+ERI+F+ G+I D ++ L+CAQLL LE++NP KE
Sbjct: 4   VASLVPMVIEQSSRGERAFDIFSRLLRERIIFINGEINDDISALVCAQLLSLESDNPDKE 63

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           ISLYINSPGGVVT+G AIYDTMQ+I  P+ST CMG AASMGS LL AG  G R +LPNA 
Sbjct: 64  ISLYINSPGGVVTSGFAIYDTMQYISCPVSTVCMGFAASMGSFLLMAGTPGRRISLPNAT 123

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           ILLHQP GGF GQASDI+RHA+ I + KR + E+Y ++CG+TYEEVE+TLDRDH M+A E
Sbjct: 124 ILLHQPLGGFQGQASDIQRHAERIGRTKRHMTELYAQHCGRTYEEVERTLDRDHFMTARE 183

Query: 195 ACDWGVVDKVLMSRID 210
           A  WG+VD V  +R  
Sbjct: 184 AQAWGIVDHVFDTRKK 199


>gi|268680774|ref|YP_003305205.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Sulfurospirillum deleyianum DSM 6946]
 gi|268618805|gb|ACZ13170.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Sulfurospirillum deleyianum DSM 6946]
          Length = 196

 Score =  269 bits (689), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 118/189 (62%), Positives = 155/189 (82%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP+VVE+T RGERSYDIYSRLLK+RI+ ++G+I D +A+ I AQLLFLEAE+P+K+I LY
Sbjct: 5   VPVVVEKTGRGERSYDIYSRLLKDRIIMLSGEINDVVASSIVAQLLFLEAEDPEKDIYLY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGGV+T+G +IYDTM +IKP IST C+GQAASMG+ LLSAG KG R+ALPNARI++H
Sbjct: 65  INSPGGVITSGFSIYDTMNYIKPDISTICIGQAASMGAFLLSAGTKGKRYALPNARIMIH 124

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA+DIE  A++I+++K+ LNEI  KNC +   ++ K  +RD  MSA E+C++
Sbjct: 125 QPLGGAQGQATDIEIQAKEILRMKQVLNEILAKNCNQKLPKIIKDTERDFFMSAEESCEY 184

Query: 199 GVVDKVLMS 207
           G++DKVL  
Sbjct: 185 GLIDKVLNK 193


>gi|195339773|ref|XP_002036491.1| GM18225 [Drosophila sechellia]
 gi|116811667|emb|CAL26000.1| CG5045 [Drosophila simulans]
 gi|194130371|gb|EDW52414.1| GM18225 [Drosophila sechellia]
          Length = 253

 Score =  269 bits (689), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 122/211 (57%), Positives = 161/211 (76%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           +S   C  + +    + L+PMVVEQT RGER+YDI+SRLLKERI+ + G I D +++ + 
Sbjct: 12  ISSAQCGGRANSVRNINLIPMVVEQTGRGERAYDIFSRLLKERIICLMGNITDDISSTVV 71

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFL++EN  K I LYINSPGGVVTAG+AIYDTMQ++KPPI+T+C+GQA SMGSLLL+
Sbjct: 72  AQLLFLQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPIATWCVGQACSMGSLLLA 131

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG  GMR++LPNARI++HQPSGG  GQA+DI  HA++I+KIKR+L  IYVK+   TYEE+
Sbjct: 132 AGAPGMRYSLPNARIMIHQPSGGAQGQATDILIHAEEIIKIKRQLTNIYVKHAKNTYEEM 191

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
              ++RDH M+  EA   G++D VL    + 
Sbjct: 192 CGRMERDHFMTPEEAKVLGIIDHVLEHPPET 222


>gi|308069047|ref|YP_003870652.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           [Paenibacillus polymyxa E681]
 gi|305858326|gb|ADM70114.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           [Paenibacillus polymyxa E681]
          Length = 194

 Score =  269 bits (689), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 112/189 (59%), Positives = 142/189 (75%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP VVEQT +GERSYDIYSRLLK+RIVFV   I+DH+A  I AQLLFL AE+P+KEI +Y
Sbjct: 5   VPYVVEQTAQGERSYDIYSRLLKDRIVFVGAAIDDHLANSIIAQLLFLAAEDPEKEIYMY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  +AG AIYDTMQ+IKP + T C G AAS G++LL AG KG R ALPN+ I++H
Sbjct: 65  INSPGGSTSAGFAIYDTMQYIKPDVHTICTGFAASFGAILLLAGAKGKRSALPNSEIMIH 124

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQASDI   A+ I+  + +   I  +  G+++E+VEK +DRD  MSA EA ++
Sbjct: 125 QPHGGAQGQASDIAISAKRILWTREKATRITAERTGQSFEKVEKDMDRDFYMSAQEALEY 184

Query: 199 GVVDKVLMS 207
           GV+D+V+ S
Sbjct: 185 GVIDQVITS 193


>gi|261408153|ref|YP_003244394.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
           sp. Y412MC10]
 gi|261284616|gb|ACX66587.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
           sp. Y412MC10]
          Length = 198

 Score =  269 bits (689), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 111/196 (56%), Positives = 145/196 (73%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           ED  + +VP VVEQTNRGERSYDIYSRLLK+RIVFV   I+D +A  I AQLLFL AE+P
Sbjct: 2   EDETMNIVPYVVEQTNRGERSYDIYSRLLKDRIVFVGAAIDDAIANSIIAQLLFLAAEDP 61

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+I +YINSPGG V+AG  IYDTMQ IKP ++T C G AAS G++LL AG KG R ALP
Sbjct: 62  EKDIHMYINSPGGSVSAGFGIYDTMQIIKPQVNTICTGFAASYGAILLLAGAKGKRLALP 121

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+ I++HQP GG  GQA+DI   A+ I+K + +L  I  +  G++ E VEK ++RD+ MS
Sbjct: 122 NSEIMIHQPLGGVQGQATDIAITAKRILKTREKLAHIISERTGQSVERVEKDMERDYFMS 181

Query: 192 ASEACDWGVVDKVLMS 207
           A EA ++G++D ++  
Sbjct: 182 AEEAKEYGIIDDIVTK 197


>gi|150398272|ref|YP_001328739.1| ATP-dependent Clp protease proteolytic subunit [Sinorhizobium
           medicae WSM419]
 gi|150029787|gb|ABR61904.1| Endopeptidase Clp [Sinorhizobium medicae WSM419]
          Length = 205

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 119/200 (59%), Positives = 157/200 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQ++RGERS+DIYSRLL+ERI+F+ G++ D ++ L+CAQLLFLEAE+P K I
Sbjct: 5   MQLVPMVVEQSSRGERSFDIYSRLLRERIIFLNGEVNDAVSALVCAQLLFLEAESPTKPI 64

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVT+G A+YDTM++I+ P+ T CMG A SMGS LL AGE G R ALPN  I
Sbjct: 65  QLYINSPGGVVTSGFAMYDTMRYIRAPVHTLCMGTARSMGSFLLMAGEAGGRAALPNTSI 124

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQPSGGF GQASD+  HA++I + K R+  +Y ++CG+TYEE E+ +DRD  M+A EA
Sbjct: 125 LVHQPSGGFQGQASDMLIHAEEIRRTKHRMTRLYAEHCGRTYEEFERAMDRDRFMTAEEA 184

Query: 196 CDWGVVDKVLMSRIDIEEKS 215
            +WG++D +L  R+   E+ 
Sbjct: 185 LEWGLIDCILTERVAGAERD 204


>gi|260459137|ref|ZP_05807392.1| Endopeptidase Clp [Mesorhizobium opportunistum WSM2075]
 gi|259034691|gb|EEW35947.1| Endopeptidase Clp [Mesorhizobium opportunistum WSM2075]
          Length = 201

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 128/196 (65%), Positives = 159/196 (81%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
              LVPMV+EQ++RGER++DI+SRLL+ERI+F+ G+I D ++ L+CAQLL LE++NP KE
Sbjct: 4   VANLVPMVIEQSSRGERAFDIFSRLLRERIIFINGEINDDISALVCAQLLSLESDNPDKE 63

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           ISLYINSPGGVVT+G AIYDTMQ+I  P+ST CMG AASMGS LL AG  G R +LPNA 
Sbjct: 64  ISLYINSPGGVVTSGFAIYDTMQYISCPVSTVCMGFAASMGSFLLMAGTPGRRISLPNAT 123

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           ILLHQP GGF GQASDI+RHA+ IVK KR + E+Y ++CG++YEEVE+TLDRDH M+A E
Sbjct: 124 ILLHQPLGGFQGQASDIQRHAERIVKTKRHMAELYAQHCGRSYEEVERTLDRDHFMTARE 183

Query: 195 ACDWGVVDKVLMSRID 210
           A  WG+VD V  +R  
Sbjct: 184 AQAWGIVDHVFDTRKK 199


>gi|15892669|ref|NP_360383.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia conorii
           str. Malish 7]
 gi|15619841|gb|AAL03284.1| ATP-dependent clp protease proteolytic subunit [Rickettsia conorii
           str. Malish 7]
          Length = 216

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 126/208 (60%), Positives = 167/208 (80%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           M+      +  E + +  VP+V+E T+RGER+YDIYSRLLKERI+FV   +EDHMA LI 
Sbjct: 1   MTKNYLINQFQEKILMSYVPIVIEPTSRGERAYDIYSRLLKERIIFVCSTVEDHMANLIV 60

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLEAENP+K+I +YINSPGGVVTAG+AIYDTMQ+IKP ++T C+GQA SMGSLLL 
Sbjct: 61  AQLLFLEAENPKKDIYMYINSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSLLLC 120

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
            GEKGMR++LP++RI++HQPSGG+ GQA+DIE HAQ+ +KIKR LNE+Y K+  +  + +
Sbjct: 121 GGEKGMRYSLPHSRIMIHQPSGGYKGQATDIEIHAQETLKIKRLLNELYSKHTEQELKHI 180

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
           EK+++RD+ MS  EA  +G+VD ++ SR
Sbjct: 181 EKSMERDNFMSPEEAKKFGLVDNIMSSR 208


>gi|218510664|ref|ZP_03508542.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli
           Brasil 5]
 gi|327192437|gb|EGE59394.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli
           CNPAF512]
          Length = 203

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 120/196 (61%), Positives = 160/196 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMV+EQ++RGERS+DIYSRLL+ERI+F+ G++ D ++ L+CAQLLFLEAENP K I
Sbjct: 5   MQLVPMVIEQSSRGERSFDIYSRLLRERIIFLNGEVNDTVSALVCAQLLFLEAENPNKPI 64

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGGVVT+G+A+YDTM+FI+ P+ T CMG A SMGS LL AGE G R ALPNA I
Sbjct: 65  NLYINSPGGVVTSGLAMYDTMRFIRAPVHTLCMGTARSMGSFLLMAGEPGGRAALPNASI 124

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQPSGGF GQASD+  HA++I+K K+R+  +Y ++CG++YE+ E  +DRD  M+A EA
Sbjct: 125 LIHQPSGGFQGQASDMLIHAEEILKTKQRMTRLYAEHCGRSYEDFEHGMDRDRFMTAEEA 184

Query: 196 CDWGVVDKVLMSRIDI 211
            +WG++D++L  R D 
Sbjct: 185 LEWGLIDRILKVREDT 200


>gi|145219256|ref|YP_001129965.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Prosthecochloris vibrioformis DSM 265]
 gi|189082462|sp|A4SDA4|CLPP_PROVI RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|145205420|gb|ABP36463.1| ATP-dependent Clp protease proteolytic subunit ClpP [Chlorobium
           phaeovibrioides DSM 265]
          Length = 225

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 106/204 (51%), Positives = 153/204 (75%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E +   LVPMV+E + RGER++DI+SRLL+ERI+F+   I++H+A LI AQL+FLE+E+P
Sbjct: 22  EGIQNSLVPMVIETSGRGERAFDIFSRLLRERIIFLGSGIDEHVAGLIMAQLIFLESEDP 81

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            ++I +Y+NSPGG V+AG+ IYDTMQ+I+P +ST C+G AASMG+ LL++G KG R +LP
Sbjct: 82  DRDIFIYVNSPGGSVSAGLGIYDTMQYIRPDVSTVCVGMAASMGAFLLASGAKGKRASLP 141

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           ++RI++HQPSGG  GQ SDI   A++I KI+R L EI  K+ GK  ++V +  +RD  M 
Sbjct: 142 HSRIMIHQPSGGAQGQESDIIIQAREIEKIRRLLEEIMAKHTGKDVQQVREDSERDRWMD 201

Query: 192 ASEACDWGVVDKVLMSRIDIEEKS 215
           A EA ++G++D+V   R   E+K 
Sbjct: 202 AGEALEYGIIDQVFEKRPAPEKKD 225


>gi|91203769|emb|CAJ71422.1| strongly similar to ATP-dependent Clp protease proteolytic subunit
           ClpP [Candidatus Kuenenia stuttgartiensis]
          Length = 224

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 104/198 (52%), Positives = 148/198 (74%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            VP VVE+T  GER YDI+SRLLK+RI+F+   IED +  L+ AQ+LFL+ EN  ++I++
Sbjct: 27  FVPYVVEKTGHGERHYDIFSRLLKDRIIFIGSAIEDTLTNLVIAQILFLQNENKNQDINI 86

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TAG+AIYDTMQF++  ++TFC+GQA SM ++LL+ G K  RF LP+ RI+L
Sbjct: 87  YINSPGGSITAGLAIYDTMQFVQCDVATFCIGQAYSMAAILLAGGTKNKRFGLPHTRIML 146

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  G A+DI   A++I+K+K+ LNEI VK+ G+  E +E  +DRD  MS+ +A +
Sbjct: 147 HQPWGGMRGTATDISIQAEEILKMKKCLNEILVKHTGQPLERIEADVDRDFYMSSHDAKE 206

Query: 198 WGVVDKVLMSRIDIEEKS 215
           +G++D+V+ S  D +EK 
Sbjct: 207 YGLIDEVIESLRDKKEKE 224


>gi|325474230|gb|EGC77418.1| ATP-dependent Clp protease proteolytic subunit 1 [Treponema
           denticola F0402]
          Length = 197

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 110/196 (56%), Positives = 147/196 (75%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
              LVP V+EQT  GERSYDI+SRLLK+RI+FV G+I D  A L+ AQLLFLEA+NP K+
Sbjct: 1   MSTLVPYVIEQTGNGERSYDIFSRLLKDRIIFVDGEINDMSADLVVAQLLFLEAQNPDKD 60

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           ISLYINSPGG VTAG+AIYDTMQ I+P + T C+GQ ASMG++LL+ G K  R+ALP++R
Sbjct: 61  ISLYINSPGGSVTAGLAIYDTMQHIRPDVQTICLGQCASMGAVLLAGGAKNKRYALPSSR 120

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           +++HQP GG  GQA DI   A++IV++K+   + + +N GKT ++V   ++RD  MSA E
Sbjct: 121 VMIHQPWGGVQGQAVDINIQAKEIVRLKKLTIKYFAENTGKTEKQVAADMERDFFMSAEE 180

Query: 195 ACDWGVVDKVLMSRID 210
           A  +G++D V+  R D
Sbjct: 181 ALAYGIIDTVMNRRKD 196


>gi|53802553|ref|YP_112777.1| ATP-dependent Clp protease proteolytic subunit [Methylococcus
           capsulatus str. Bath]
 gi|67460462|sp|Q60C68|CLPP1_METCA RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|53756314|gb|AAU90605.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylococcus
           capsulatus str. Bath]
          Length = 206

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 117/193 (60%), Positives = 161/193 (83%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVP+V+EQ+ RGER++DIYSRLLKER++F+ GQ+ED+MA L+ AQLLFLE+ENP K+I 
Sbjct: 10  GLVPVVIEQSARGERAFDIYSRLLKERVIFLVGQVEDYMANLVIAQLLFLESENPDKDIH 69

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG+VTAG+AIYDTMQFIKP +ST C+GQAASMG+LLL+ G  G R+ LP++RI+
Sbjct: 70  LYINSPGGLVTAGLAIYDTMQFIKPDVSTLCVGQAASMGALLLAGGAAGKRYCLPHSRIM 129

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDI+ HA++I+ ++ RLN+I   + G+  E+++   DRD+ M  ++A 
Sbjct: 130 IHQPLGGFQGQASDIDIHAREILAVRDRLNKILAHHTGQPIEKIQIDTDRDNFMGGNDAV 189

Query: 197 DWGVVDKVLMSRI 209
           ++G++DKVL+SR 
Sbjct: 190 EYGLIDKVLVSRA 202


>gi|116256436|sp|Q3AJN8|CLPP2_SYNSC RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
          Length = 197

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 97/192 (50%), Positives = 138/192 (71%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+E++ RGER++DIYSRLL+ERI+F+   +    A  I AQ+LFLEAE+P+K+I L
Sbjct: 1   MIPIVIEESGRGERAFDIYSRLLRERIIFLGEAVTSDSANRIVAQMLFLEAEDPEKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I+DTMQ IKP + T C+G AASMG+ LL AG KG R +L ++RI++
Sbjct: 61  YINSPGGSVYDGLGIFDTMQHIKPDVHTVCVGLAASMGAFLLCAGTKGKRSSLQHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A +I+ +K RLN+      G+T + +++  DRD  MS +EA +
Sbjct: 121 HQPLGGAQGQASDIRIQADEILFLKERLNKELSDRTGQTLDRIQQDTDRDFFMSPTEAMN 180

Query: 198 WGVVDKVLMSRI 209
           +G++D V+  R 
Sbjct: 181 YGLIDSVIDKRP 192


>gi|17981474|gb|AAL51031.1|AF454758_1 ClpP2 [Bacillus thuringiensis]
 gi|326940559|gb|AEA16455.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 193

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 103/193 (53%), Positives = 139/193 (72%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ +K+I
Sbjct: 1   MNAIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I
Sbjct: 61  FLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+A EA
Sbjct: 121 MIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMTAEEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD V+  +
Sbjct: 181 KEYGIVDDVVTKK 193


>gi|167521860|ref|XP_001745268.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776226|gb|EDQ89846.1| predicted protein [Monosiga brevicollis MX1]
          Length = 209

 Score =  269 bits (688), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 114/191 (59%), Positives = 153/191 (80%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MVVE T  GER++DIYSRLL+ERIV + G ++D MA+ I AQLL LE+ENP + +S+YIN
Sbjct: 1   MVVESTPVGERAFDIYSRLLRERIVCLMGPVDDAMASTIVAQLLHLESENPDEPVSVYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGG VTAG+AIYDT+Q+I+P I+T C GQA SMGSLLL+AG  G R+ALPN+RI++HQP
Sbjct: 61  SPGGSVTAGLAIYDTLQYIRPRITTVCSGQACSMGSLLLTAGSPGHRYALPNSRIMVHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
           SGG  GQASDI  HA++I+K+K  +N +Y  + G+TY+E+E  LDRD  MSA EA D+G+
Sbjct: 121 SGGARGQASDIAIHAEEILKLKTTINNLYAHHTGRTYDEIEAALDRDRFMSAQEAKDFGL 180

Query: 201 VDKVLMSRIDI 211
           +D++++SR  +
Sbjct: 181 IDQIVVSRKQV 191


>gi|15604378|ref|NP_220894.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
           prowazekii str. Madrid E]
 gi|6225160|sp|Q9ZD29|CLPP_RICPR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|3861070|emb|CAA14970.1| ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT (clpP) [Rickettsia
           prowazekii]
 gi|292572133|gb|ADE30048.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
           prowazekii Rp22]
          Length = 201

 Score =  269 bits (688), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 125/196 (63%), Positives = 164/196 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP+V+EQT+RGER+YDIYSRLLKERI+FV   +EDHMA LI AQLLFLEAENP+K+I
Sbjct: 1   MSYVPVVIEQTSRGERAYDIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAENPKKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG+AIYDTMQFIKP ++T C+GQA SMGSLLL  GE GMR++LP++RI
Sbjct: 61  YMYINSPGGVVTAGLAIYDTMQFIKPKVATLCIGQACSMGSLLLCGGEHGMRYSLPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG+ GQA+DIE HA++ +KIKR LNE+Y K+  +  + +EK+++RD+ MS+ EA
Sbjct: 121 MIHQPSGGYKGQATDIEIHARETLKIKRLLNELYSKHTKQELKYIEKSMERDNFMSSEEA 180

Query: 196 CDWGVVDKVLMSRIDI 211
             +G+VD ++ SR  I
Sbjct: 181 KKFGLVDNIISSRDTI 196


>gi|218897812|ref|YP_002446223.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus G9842]
 gi|218542547|gb|ACK94941.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus G9842]
          Length = 193

 Score =  269 bits (688), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 103/193 (53%), Positives = 139/193 (72%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ +K+I
Sbjct: 1   MNAIPYVVEQTKIGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I
Sbjct: 61  YLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+A EA
Sbjct: 121 MIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMTAEEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD V+  +
Sbjct: 181 KEYGIVDDVVTKK 193


>gi|195384926|ref|XP_002051163.1| GJ13731 [Drosophila virilis]
 gi|194147620|gb|EDW63318.1| GJ13731 [Drosophila virilis]
          Length = 254

 Score =  269 bits (688), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 119/207 (57%), Positives = 158/207 (76%)

Query: 5   GCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLL 64
            C+ +      + L+PMVVEQT RGER+YDI+SRLLKERI+ + G I D +++ + AQLL
Sbjct: 16  ACSTQAPHVRGINLIPMVVEQTGRGERAYDIFSRLLKERIICLMGNITDDISSTVVAQLL 75

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           FL++EN  K I LYINSPGGVVTAG+AIYDTMQ++KPPI+T+C+GQA SMGSLLL+AG  
Sbjct: 76  FLQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPIATWCVGQACSMGSLLLAAGAP 135

Query: 125 GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
           GMR++LPNARI++HQPSGG  GQA+DI  HA++I+KIKR+L  IYVK+    Y+E+   +
Sbjct: 136 GMRYSLPNARIMIHQPSGGAQGQATDILIHAEEIIKIKRQLTNIYVKHAKNNYDEMCARM 195

Query: 185 DRDHIMSASEACDWGVVDKVLMSRIDI 211
           +RDH M+  EA   G++D VL    + 
Sbjct: 196 ERDHFMTPEEAKTLGIIDHVLEHPPET 222


>gi|83815964|ref|YP_446772.1| ATP-dependent Clp protease proteolytic subunit [Salinibacter ruber
           DSM 13855]
 gi|83757358|gb|ABC45471.1| ATP-dependent Clp protease proteolytic subunit [Salinibacter ruber
           DSM 13855]
          Length = 272

 Score =  269 bits (688), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 109/194 (56%), Positives = 146/194 (75%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           +    GLVPMVVEQT RGER+YDI+SRLLKERIVF+   I D +A L  AQLL+L +E+ 
Sbjct: 54  DQPMSGLVPMVVEQTTRGERAYDIFSRLLKERIVFIGTPINDQIANLTVAQLLYLASESS 113

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K I+LYINSPGGV+ +G+ +YDTMQ+I  P+ST C+G AASMGS+LL+AGE   R  LP
Sbjct: 114 EKPINLYINSPGGVIYSGLGVYDTMQYIGAPVSTICVGLAASMGSVLLAAGEDDSRACLP 173

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+R+++HQP GG  GQASDIE  A++I+ +K RL EI   + G+  +++E   DR++ MS
Sbjct: 174 NSRVMIHQPMGGAEGQASDIEIQAEEIMWLKERLYEILALHTGQDIDQIEADADRNYWMS 233

Query: 192 ASEACDWGVVDKVL 205
           A EA ++G+VD VL
Sbjct: 234 AEEAEEYGLVDNVL 247


>gi|148543625|ref|YP_001270995.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           reuteri DSM 20016]
 gi|184153034|ref|YP_001841375.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           reuteri JCM 1112]
 gi|194468177|ref|ZP_03074163.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           reuteri 100-23]
 gi|227363410|ref|ZP_03847534.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           reuteri MM2-3]
 gi|227545094|ref|ZP_03975143.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           reuteri CF48-3A]
 gi|300909236|ref|ZP_07126697.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           reuteri SD2112]
 gi|325681981|ref|ZP_08161499.1| ATP-dependent Clp protease, protease subunit [Lactobacillus reuteri
           MM4-1A]
 gi|167008650|sp|A5VII4|CLPP_LACRD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706458|sp|B2G613|CLPP_LACRJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|148530659|gb|ABQ82658.1| ATP-dependent Clp protease proteolytic subunit ClpP [Lactobacillus
           reuteri DSM 20016]
 gi|183224378|dbj|BAG24895.1| endopeptidase Clp proteolytic subunit [Lactobacillus reuteri JCM
           1112]
 gi|194453030|gb|EDX41928.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           reuteri 100-23]
 gi|227071510|gb|EEI09809.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           reuteri MM2-3]
 gi|227184943|gb|EEI65014.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           reuteri CF48-3A]
 gi|300893101|gb|EFK86460.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           reuteri SD2112]
 gi|324978625|gb|EGC15574.1| ATP-dependent Clp protease, protease subunit [Lactobacillus reuteri
           MM4-1A]
          Length = 197

 Score =  269 bits (688), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 106/197 (53%), Positives = 150/197 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQ++RGER+YDIYSRLLK+RI+ ++G IED MA  I AQLLFL+A++  K+I
Sbjct: 1   MNLVPTVIEQSSRGERAYDIYSRLLKDRIIMLSGPIEDEMANSIVAQLLFLDAQDSTKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVT+GMAIYDTM FIK  + T  +G AASM S+L+S+G KG RF LP++++
Sbjct: 61  YLYINSPGGVVTSGMAIYDTMNFIKADVQTIVIGMAASMASVLVSSGAKGKRFGLPHSQV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQPSGG  GQ ++IE  A +I+K ++ LN I  KN G+  E+++   +RDH ++A EA
Sbjct: 121 LIHQPSGGAQGQQTEIEIAATEILKTRKMLNGILAKNSGQPIEKIQADTERDHYLTAQEA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
            D+G++D V+ +   ++
Sbjct: 181 VDYGLLDGVMENNSKLK 197


>gi|313110498|ref|ZP_07796383.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa 39016]
 gi|310882885|gb|EFQ41479.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa 39016]
          Length = 213

 Score =  269 bits (688), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 121/192 (63%), Positives = 154/192 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMVVEQ+ RGER+YDIYSRLLKERI+F+ GQ+ED+MA L+ AQLLFLEAENP+K+I 
Sbjct: 18  GLVPMVVEQSARGERAYDIYSRLLKERIIFLVGQVEDYMANLVVAQLLFLEAENPEKDIH 77

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+LLL+ G  G R+ LP++R++
Sbjct: 78  LYINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGALLLAGGAAGKRYCLPHSRMM 137

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+ IK RLN+I   +  +  + + +  DRD  MS  EA 
Sbjct: 138 IHQPLGGFQGQASDIEIHAKEILFIKERLNQILAHHTRQPLDVIARDTDRDRFMSGDEAV 197

Query: 197 DWGVVDKVLMSR 208
            +G++DKV+  R
Sbjct: 198 KYGLIDKVMTQR 209


>gi|298369365|ref|ZP_06980683.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria sp.
           oral taxon 014 str. F0314]
 gi|298283368|gb|EFI24855.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria sp.
           oral taxon 014 str. F0314]
          Length = 206

 Score =  269 bits (688), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 123/197 (62%), Positives = 161/197 (81%), Gaps = 2/197 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ+ RGER++DIYSRLLKERIVF+ G ++D  A L+ AQLLFLE+ENP K+I  
Sbjct: 9   LVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVDDQSANLVVAQLLFLESENPDKDIFF 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AGM+IYDTM FIKP +ST C+GQAASMG+ LLSAGEKG RFALPN+RI++
Sbjct: 69  YINSPGGSVSAGMSIYDTMNFIKPNVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMI 128

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG SGQASDIE HA++++K+K +LN +  K+CG+   ++E+  DRD+ MSA EA
Sbjct: 129 HQPLISGGLSGQASDIEIHAKELLKLKEKLNRLLAKHCGRDLADLERDTDRDNYMSAEEA 188

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G+VD+VL +R  ++
Sbjct: 189 KEYGLVDQVLENRASMQ 205


>gi|295705906|ref|YP_003598981.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bacillus
           megaterium DSM 319]
 gi|294803565|gb|ADF40631.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           megaterium DSM 319]
          Length = 193

 Score =  269 bits (688), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 104/193 (53%), Positives = 145/193 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P V+EQ+NRGERSYDIYSRLLK+RI+ +  +I DH+A  + AQLLFL A++P+K+I
Sbjct: 1   MSTIPYVIEQSNRGERSYDIYSRLLKDRIILIGDEINDHIANSVVAQLLFLAADDPKKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG  +AG AIYDTMQ+I+P + T C G AAS G+LLL AG KG R+ALPN+ +
Sbjct: 61  SLYINSPGGSTSAGFAIYDTMQYIEPDVQTICTGMAASFGALLLLAGAKGKRYALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K+K+ +NEI     G+  E+V    +RD+ MSA EA
Sbjct: 121 MIHQPLGGARGQATEIEISARRILKLKQHINEIISTRTGQPVEKVANDTERDYFMSAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D +L+ +
Sbjct: 181 KTYGIIDGILLPK 193


>gi|229110239|ref|ZP_04239813.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock1-15]
 gi|229128131|ref|ZP_04257113.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           BDRD-Cer4]
 gi|228655406|gb|EEL11262.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           BDRD-Cer4]
 gi|228673225|gb|EEL28495.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock1-15]
          Length = 198

 Score =  269 bits (688), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 104/197 (52%), Positives = 140/197 (71%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E+  +  +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ 
Sbjct: 2   EEFKMNTIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDA 61

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+I LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALP
Sbjct: 62  EKDIYLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALP 121

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+ I++HQP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+
Sbjct: 122 NSEIMIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMT 181

Query: 192 ASEACDWGVVDKVLMSR 208
           A EA  +G+VD V+  +
Sbjct: 182 AEEAKAYGIVDDVVTKK 198


>gi|149186485|ref|ZP_01864797.1| ATP-dependent Clp protease [Erythrobacter sp. SD-21]
 gi|148829712|gb|EDL48151.1| ATP-dependent Clp protease [Erythrobacter sp. SD-21]
          Length = 241

 Score =  269 bits (688), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 133/214 (62%), Positives = 171/214 (79%), Gaps = 2/214 (0%)

Query: 3   FEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQ 62
           F G   +D   +   LVP VVEQ++RGER++DI+SRLL+ERIVFVTGQ+ED MA+LI AQ
Sbjct: 16  FGGRFTRDP--ITGALVPTVVEQSSRGERAFDIFSRLLRERIVFVTGQVEDTMASLIVAQ 73

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           LLFLE+ENP K IS+YINSPGGVVTAGMAI+DTMQ+IKP +ST C+GQAASMGS LL+AG
Sbjct: 74  LLFLESENPSKPISMYINSPGGVVTAGMAIHDTMQYIKPRVSTVCIGQAASMGSFLLAAG 133

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
           E GMR ALPNARI++HQPSGG  G ASDIE  A++I++I++R+N++YV+  GK+  E+EK
Sbjct: 134 EPGMRIALPNARIMVHQPSGGARGMASDIEIQAREILRIRKRMNDLYVQYTGKSLTEIEK 193

Query: 183 TLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
            +DRD  + A EA  +G+VDKV  +R + E   +
Sbjct: 194 AMDRDTFLEAEEAMKFGIVDKVFEARPENEGDDE 227


>gi|307293097|ref|ZP_07572943.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sphingobium
           chlorophenolicum L-1]
 gi|306881163|gb|EFN12379.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sphingobium
           chlorophenolicum L-1]
          Length = 211

 Score =  269 bits (688), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 127/205 (61%), Positives = 165/205 (80%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
            D    LVP+V+EQ+NRGERS+DIYSRLL+ERI+FVTGQ+EDHMA+LI AQLLFLE+ENP
Sbjct: 6   SDPMAALVPIVIEQSNRGERSFDIYSRLLRERIIFVTGQVEDHMASLIVAQLLFLESENP 65

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+I +YINSPGGVVT+GMAI+DTM++I+P + T C+GQAASMGS LL+AGE G R AL 
Sbjct: 66  KKDIWMYINSPGGVVTSGMAIHDTMKYIRPQVGTVCIGQAASMGSFLLAAGEPGKRIALS 125

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           NARI++HQPSGG  G ASDIE  A++I++I+ RLN +YV+  G+T EEVE+ +DRD  + 
Sbjct: 126 NARIMVHQPSGGAQGMASDIEIQAKEILRIRSRLNNLYVQYTGRTLEEVERAMDRDTFLE 185

Query: 192 ASEACDWGVVDKVLMSRIDIEEKSK 216
           A EA  +G+VD+V   R    E ++
Sbjct: 186 AEEAKAFGLVDEVFDRRPAAAETAE 210


>gi|270290690|ref|ZP_06196914.1| Clp protease [Pediococcus acidilactici 7_4]
 gi|304386215|ref|ZP_07368548.1| ATP-dependent Clp protease proteolytic subunit [Pediococcus
           acidilactici DSM 20284]
 gi|270280750|gb|EFA26584.1| Clp protease [Pediococcus acidilactici 7_4]
 gi|304327572|gb|EFL94799.1| ATP-dependent Clp protease proteolytic subunit [Pediococcus
           acidilactici DSM 20284]
          Length = 197

 Score =  269 bits (688), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 101/197 (51%), Positives = 149/197 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQ++RGER+YDIYSRLLK+RI+ ++G I+D +A  I +QLLFL+A++ +K+I
Sbjct: 1   MNLVPTVIEQSSRGERAYDIYSRLLKDRIIMLSGPIDDDLANSIISQLLFLDAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVTAG+AIYDTM FIK  + T  MG AASM S+L S+G KG RFALP++ +
Sbjct: 61  YLYINSPGGVVTAGLAIYDTMNFIKADVQTIVMGMAASMASVLASSGTKGKRFALPHSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQ ++IE  A+ I+K ++ LN+I  +N G+  E++    +RD+ +SA +A
Sbjct: 121 MIHQPSGGAQGQQTEIEIAAEQILKTRKELNKILAENSGQPLEKINLDTERDNYLSAQDA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
            D+G++D ++     ++
Sbjct: 181 VDYGLIDGIMEKNASLK 197


>gi|310641963|ref|YP_003946721.1| ATP-dependent clp protease proteolytic subunit [Paenibacillus
           polymyxa SC2]
 gi|309246913|gb|ADO56480.1| ATP-dependent Clp protease proteolytic subunit [Paenibacillus
           polymyxa SC2]
          Length = 194

 Score =  269 bits (688), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 110/189 (58%), Positives = 141/189 (74%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP VVEQT +GERSYDIYSRLLK+RIVFV   I+D +A  I AQLLFL AE+P+K+I +Y
Sbjct: 5   VPYVVEQTAQGERSYDIYSRLLKDRIVFVGATIDDQLANSIIAQLLFLAAEDPEKDIYMY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  +AG AIYDTMQ+IKP + T C G AAS G++LL AG KG R ALPN+ I++H
Sbjct: 65  INSPGGSTSAGFAIYDTMQYIKPEVHTICTGFAASFGAILLLAGAKGKRSALPNSEIMIH 124

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQASDI   A+ I+  + +   I  +  G+++E+VEK +DRD  MSA EA ++
Sbjct: 125 QPHGGAQGQASDIAISAKRILWTREKATRITAERTGQSFEKVEKDMDRDFYMSAQEALEY 184

Query: 199 GVVDKVLMS 207
           GV+D+V+ S
Sbjct: 185 GVIDQVITS 193


>gi|269123536|ref|YP_003306113.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Streptobacillus moniliformis DSM 12112]
 gi|268314862|gb|ACZ01236.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Streptobacillus moniliformis DSM 12112]
          Length = 192

 Score =  269 bits (688), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 103/192 (53%), Positives = 143/192 (74%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP ++E    GER+YDIYSRLLK+RI+F++G+I   MA  I AQLLFL A++ +K+I
Sbjct: 1   MSLVPYIIENEGSGERTYDIYSRLLKDRIIFLSGEINTEMANAIIAQLLFLNAQDKEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           ++YINSPGG+VTAG  IYDTM  I   + T C+G AASMG+ LLS+G KG RFALPN+ +
Sbjct: 61  TMYINSPGGMVTAGFGIYDTMNHISCDVVTVCIGMAASMGAFLLSSGTKGKRFALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+  A++I+K K +L EI  KN G+++E++    +RD+ +SA EA
Sbjct: 121 MIHQPLGGARGQATDIQIVAENILKTKHKLAEILSKNTGQSFEKIISDTERDNYLSAEEA 180

Query: 196 CDWGVVDKVLMS 207
             +G+VDKVL  
Sbjct: 181 VAYGLVDKVLEK 192


>gi|217979044|ref|YP_002363191.1| Endopeptidase Clp [Methylocella silvestris BL2]
 gi|217504420|gb|ACK51829.1| Endopeptidase Clp [Methylocella silvestris BL2]
          Length = 215

 Score =  269 bits (688), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 141/202 (69%), Positives = 175/202 (86%), Gaps = 1/202 (0%)

Query: 10  DSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           D  +V+   L+P V+E T+RGER +DIYSRLL+ERI+F+TG +EDHMA++I AQLLFLEA
Sbjct: 5   DPIEVYNSYLIPQVIENTSRGERGFDIYSRLLRERIIFLTGPVEDHMASVIIAQLLFLEA 64

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEIS+YINSPGGVVTAG+AIYDTMQFI+P +ST C+GQAASMGSLLL AGE G RF
Sbjct: 65  ENPKKEISMYINSPGGVVTAGLAIYDTMQFIRPKVSTLCVGQAASMGSLLLCAGEAGQRF 124

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           ALPNARI++HQPSGGF GQASDI RHA+DI+K+KRRLN+IYVK+ G+ Y+ +EKTLDRDH
Sbjct: 125 ALPNARIMVHQPSGGFQGQASDILRHAEDIMKVKRRLNDIYVKHTGRDYDTIEKTLDRDH 184

Query: 189 IMSASEACDWGVVDKVLMSRID 210
            MS+ +A ++G+VD V+  R D
Sbjct: 185 FMSSDDAREFGIVDSVISQRPD 206


>gi|222096291|ref|YP_002530348.1| ATP-dependent clp protease, proteolytic subunit clpp [Bacillus
           cereus Q1]
 gi|221240349|gb|ACM13059.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus Q1]
          Length = 193

 Score =  269 bits (688), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 103/193 (53%), Positives = 139/193 (72%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ +K+I
Sbjct: 1   MNAIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG  TAG AI DTM  I+P + T CMG AAS G+LLL AG KG RFALPN+ I
Sbjct: 61  FLYINSPGGSTTAGFAILDTMNLIRPDVQTLCMGLAASFGALLLLAGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K+K  +N+I     G+  E++    +RD+ M+A EA
Sbjct: 121 MIHQPLGGVKGQATEIEITAKRILKLKHDINKIIADRTGQPIEKIAHDTERDYFMTAEEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD V+  +
Sbjct: 181 KEYGIVDGVVEKK 193


>gi|228939909|ref|ZP_04102486.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228972800|ref|ZP_04133399.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228979383|ref|ZP_04139719.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis Bt407]
 gi|228780387|gb|EEM28618.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis Bt407]
 gi|228787015|gb|EEM34995.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228819840|gb|EEM65888.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar berliner ATCC 10792]
          Length = 198

 Score =  269 bits (688), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 103/193 (53%), Positives = 139/193 (72%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ +K+I
Sbjct: 6   MNAIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDI 65

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I
Sbjct: 66  FLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEI 125

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+A EA
Sbjct: 126 MIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMTAEEA 185

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD V+  +
Sbjct: 186 KEYGIVDDVVTKK 198


>gi|116811645|emb|CAL25989.1| CG5045 [Drosophila melanogaster]
 gi|116811649|emb|CAL25991.1| CG5045 [Drosophila melanogaster]
 gi|116811651|emb|CAL25992.1| CG5045 [Drosophila melanogaster]
 gi|116811653|emb|CAL25993.1| CG5045 [Drosophila melanogaster]
 gi|116811655|emb|CAL25994.1| CG5045 [Drosophila melanogaster]
 gi|116811657|emb|CAL25995.1| CG5045 [Drosophila melanogaster]
 gi|116811659|emb|CAL25996.1| CG5045 [Drosophila melanogaster]
 gi|116811661|emb|CAL25997.1| CG5045 [Drosophila melanogaster]
 gi|116811663|emb|CAL25998.1| CG5045 [Drosophila melanogaster]
 gi|116811665|emb|CAL25999.1| CG5045 [Drosophila melanogaster]
 gi|223966785|emb|CAR93129.1| CG5045-PA [Drosophila melanogaster]
 gi|223966787|emb|CAR93130.1| CG5045-PA [Drosophila melanogaster]
 gi|223966789|emb|CAR93131.1| CG5045-PA [Drosophila melanogaster]
 gi|223966791|emb|CAR93132.1| CG5045-PA [Drosophila melanogaster]
 gi|223966795|emb|CAR93134.1| CG5045-PA [Drosophila melanogaster]
 gi|223966797|emb|CAR93135.1| CG5045-PA [Drosophila melanogaster]
 gi|223966799|emb|CAR93136.1| CG5045-PA [Drosophila melanogaster]
 gi|223966801|emb|CAR93137.1| CG5045-PA [Drosophila melanogaster]
 gi|223966803|emb|CAR93138.1| CG5045-PA [Drosophila melanogaster]
          Length = 253

 Score =  269 bits (688), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 122/211 (57%), Positives = 161/211 (76%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           +S   C  + +    + L+PMVVEQT RGER+YDI+SRLLKERI+ + G I D +++ + 
Sbjct: 12  ISSVQCGGRANSVRNINLIPMVVEQTGRGERAYDIFSRLLKERIICLMGNITDDISSTVV 71

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFL++EN  K I LYINSPGGVVTAG+AIYDTMQ++KPPI+T+C+GQA SMGSLLL+
Sbjct: 72  AQLLFLQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPIATWCVGQACSMGSLLLA 131

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG  GMR++LPNARI++HQPSGG  GQA+DI  HA++I+KIKR+L  IYVK+   TYEE+
Sbjct: 132 AGAPGMRYSLPNARIMIHQPSGGAQGQATDILIHAEEIIKIKRQLTNIYVKHAKNTYEEM 191

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
              ++RDH M+  EA   G++D VL    + 
Sbjct: 192 CGRMERDHFMTPEEAKVLGIIDHVLEHPPET 222


>gi|116811647|emb|CAL25990.1| CG5045 [Drosophila melanogaster]
          Length = 253

 Score =  269 bits (687), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 122/211 (57%), Positives = 161/211 (76%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           +S   C  + +    + L+PMVVEQT RGER+YDI+SRLLKERI+ + G I D +++ + 
Sbjct: 12  ISSVQCGGRANSVRNINLIPMVVEQTGRGERAYDIFSRLLKERIICLMGNITDDISSTVV 71

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFL++EN  K I LYINSPGGVVTAG+AIYDTMQ++KPPI+T+C+GQA SMGSLLL+
Sbjct: 72  AQLLFLQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPIATWCVGQACSMGSLLLA 131

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG  GMR++LPNARI++HQPSGG  GQA+DI  HA++I+KIKR+L  IYVK+   TYEE+
Sbjct: 132 AGAPGMRYSLPNARIMIHQPSGGAQGQATDILIHAEEIIKIKRQLTNIYVKHAKNTYEEM 191

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
              ++RDH M+  EA   G++D VL    + 
Sbjct: 192 CGRMERDHFMTPEEAKVLGIIDHVLEHPPET 222


>gi|72382132|ref|YP_291487.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus str. NATL2A]
 gi|115311342|sp|Q46L44|CLPP1_PROMT RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|72001982|gb|AAZ57784.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Prochlorococcus marinus str. NATL2A]
          Length = 196

 Score =  269 bits (687), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 99/192 (51%), Positives = 134/192 (69%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+E++ RGER++DIYSRLL+ERIVF+   +    A  I AQLLFLEA++P K+I L
Sbjct: 1   MIPIVIEESGRGERAFDIYSRLLRERIVFLGEPVTSDSANRIVAQLLFLEADDPDKDIFL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I+DTMQ +KP I T C+G AASMG+ LL AG KG R +L ++RI++
Sbjct: 61  YINSPGGSVYDGLGIFDTMQHVKPDIHTVCVGLAASMGAFLLCAGAKGKRSSLLHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A +I+ IK +LN+      G+  E + +  DRD  MS SEA +
Sbjct: 121 HQPLGGARGQASDIRIQADEILFIKDKLNKELSDRTGQPIERIREDTDRDFYMSPSEAIE 180

Query: 198 WGVVDKVLMSRI 209
           +G++D V   R 
Sbjct: 181 YGIIDNVFNKRP 192


>gi|218461999|ref|ZP_03502090.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli Kim
           5]
          Length = 203

 Score =  269 bits (687), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 120/196 (61%), Positives = 161/196 (82%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMV+EQ++RGERS+DIYSRLL+ERI+F+ G++ D ++ L+CAQLLFLEAENP K I
Sbjct: 5   MQLVPMVIEQSSRGERSFDIYSRLLRERIIFLNGEVNDTVSALVCAQLLFLEAENPHKPI 64

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGGVVT+G+A+YDTM+FI+ P+ T CMG A SMGS LL AGE G R ALPNA I
Sbjct: 65  NLYINSPGGVVTSGLAMYDTMRFIRAPVHTLCMGTARSMGSFLLMAGEPGGRAALPNASI 124

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQPSGGF GQASD+  HA++I+K K+R+  +Y ++CG++YE+ E+ +DRD  M+A EA
Sbjct: 125 LIHQPSGGFQGQASDMLIHAEEILKTKQRMTRLYAEHCGRSYEDFERGMDRDRFMTAEEA 184

Query: 196 CDWGVVDKVLMSRIDI 211
            +WG++D++L  R D 
Sbjct: 185 LEWGLIDRILKVREDT 200


>gi|229046487|ref|ZP_04192142.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           AH676]
 gi|228724849|gb|EEL76151.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           AH676]
          Length = 198

 Score =  269 bits (687), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 104/197 (52%), Positives = 140/197 (71%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E   +  +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ 
Sbjct: 2   EGYKMNAIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDA 61

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+I LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALP
Sbjct: 62  EKDIFLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALP 121

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+ I++HQP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+
Sbjct: 122 NSEIMIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMT 181

Query: 192 ASEACDWGVVDKVLMSR 208
           A EA ++G+VD V+  +
Sbjct: 182 AEEAKEYGIVDDVVTKK 198


>gi|195434156|ref|XP_002065069.1| GK15263 [Drosophila willistoni]
 gi|194161154|gb|EDW76055.1| GK15263 [Drosophila willistoni]
          Length = 255

 Score =  269 bits (687), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 121/211 (57%), Positives = 162/211 (76%)

Query: 5   GCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLL 64
            CA + +    + L+PMVVEQT RGER+YDI+SRLLKERI+ + G I D +++ + AQLL
Sbjct: 16  QCASRANSVRGINLIPMVVEQTGRGERAYDIFSRLLKERIICLMGNITDDISSTVVAQLL 75

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           FL++EN  K I LYINSPGGVVTAG+AIYDTMQ++KPPI+T+C+GQA SMGSLLL+AG  
Sbjct: 76  FLQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPIATWCVGQACSMGSLLLAAGAP 135

Query: 125 GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
           GMR++LPNARI++HQPSGG  GQA+DI  HA++I+KIKR+L  IYVK+   +Y+E+ + +
Sbjct: 136 GMRYSLPNARIMIHQPSGGAQGQATDILIHAEEIIKIKRQLTAIYVKHAKNSYDEMCQRM 195

Query: 185 DRDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
           +RDH M+  EA   G++D VL    +    S
Sbjct: 196 ERDHFMTPEEAKTLGIIDHVLEHPPETVSDS 226


>gi|194859835|ref|XP_001969460.1| GG10114 [Drosophila erecta]
 gi|190661327|gb|EDV58519.1| GG10114 [Drosophila erecta]
          Length = 253

 Score =  269 bits (687), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 121/207 (58%), Positives = 159/207 (76%)

Query: 5   GCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLL 64
            C  + +    + L+PMVVEQT RGER+YDI+SRLLKERI+ + G I D +++ + AQLL
Sbjct: 16  QCVSRANSVRNINLIPMVVEQTGRGERAYDIFSRLLKERIICLMGNITDDISSTVVAQLL 75

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           FL++EN  K I LYINSPGGVVTAG+AIYDTMQ++KPPI+T+C+GQA SMGSLLL+AG  
Sbjct: 76  FLQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPIATWCVGQACSMGSLLLAAGAP 135

Query: 125 GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
           GMR++LPNARI++HQPSGG  GQA+DI  HA++I+KIKR+L  IYVK+   TYEE+   +
Sbjct: 136 GMRYSLPNARIMIHQPSGGAQGQATDILIHAEEIIKIKRQLTNIYVKHAKNTYEEMCGRM 195

Query: 185 DRDHIMSASEACDWGVVDKVLMSRIDI 211
           +RDH M+  EA   G++D VL    + 
Sbjct: 196 ERDHFMTPEEAKVLGIIDHVLEHPPET 222


>gi|168335354|ref|ZP_02693449.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Epulopiscium
           sp. 'N.t. morphotype B']
          Length = 193

 Score =  269 bits (687), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 109/192 (56%), Positives = 148/192 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +PMVVEQTNRGERSYDIYSRLLK+RI+ +  ++    ++L  AQLLFLEAE+P K+I
Sbjct: 1   MPSIPMVVEQTNRGERSYDIYSRLLKDRIILLCDEVNHVTSSLTVAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +  GMAIYDTMQ+IKP +ST CMG AASMG+ LL+ G+KG R ALPNA I
Sbjct: 61  MLYINSPGGSIVDGMAIYDTMQYIKPDVSTICMGMAASMGAFLLAGGQKGKRLALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+ HA+ I++ K ++N+I   N G+T E+V    +RD+ M+A+EA
Sbjct: 121 MIHQPLGGTRGQATDIQIHAEHIIRTKAKMNQILSANTGQTLEKVALDTERDYYMTAAEA 180

Query: 196 CDWGVVDKVLMS 207
            ++G++D+V+  
Sbjct: 181 KEYGIIDRVIEK 192


>gi|326386907|ref|ZP_08208521.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326208587|gb|EGD59390.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 231

 Score =  269 bits (687), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 131/214 (61%), Positives = 172/214 (80%), Gaps = 1/214 (0%)

Query: 4   EGCAKKDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQ 62
            G   K + D   G L+P+VVEQ++RGERS+DIYSRLL+ERI+FVTG+IEDHMA++I AQ
Sbjct: 8   SGAQGKFTTDPVTGALIPVVVEQSSRGERSFDIYSRLLRERIIFVTGEIEDHMASVIVAQ 67

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           LLFLE+ENP K+IS+YINSPGGVVTAGMAI+DTM++I+P +ST C+GQA SMGS LL+AG
Sbjct: 68  LLFLESENPSKDISMYINSPGGVVTAGMAIHDTMKYIRPRVSTVCIGQACSMGSFLLAAG 127

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
           E G+R ALPNARI++HQPSGG  G ASDIE  A++I++I+ R+N++YVK  G+  EE+E+
Sbjct: 128 EPGLRVALPNARIMIHQPSGGARGMASDIEIQAREILRIRTRMNDLYVKYTGRQLEEIER 187

Query: 183 TLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
            LDRD  + A EA  +G+VDKV  SR   ++  +
Sbjct: 188 ALDRDTFLEADEALAFGLVDKVFESRPASDQTGE 221


>gi|116492258|ref|YP_803993.1| ATP-dependent Clp protease proteolytic subunit [Pediococcus
           pentosaceus ATCC 25745]
 gi|122266278|sp|Q03GX1|CLPP_PEDPA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|116102408|gb|ABJ67551.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pediococcus
           pentosaceus ATCC 25745]
          Length = 197

 Score =  269 bits (687), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 100/197 (50%), Positives = 149/197 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQ++RGER+YDIYSRLLK+RI+ ++G I+D +A  I +QLLFL+A++ +K+I
Sbjct: 1   MNLVPTVIEQSSRGERAYDIYSRLLKDRIIMLSGPIDDDLANSIISQLLFLDAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVTAG+AIYDTM FIK  + T  MG AASM S+L S+G KG RFALP++ +
Sbjct: 61  YLYINSPGGVVTAGLAIYDTMNFIKSDVQTIVMGMAASMASVLASSGTKGKRFALPHSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQ ++IE  A+ I+K ++ LN I  +N G+  E++    +RD+ +SA +A
Sbjct: 121 MIHQPSGGAQGQQTEIEIAAEQILKTRKELNTILAENSGQPLEKINIDTERDNYLSAQDA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G++D ++    +++
Sbjct: 181 VEYGLIDGIMEKNANLK 197


>gi|319787636|ref|YP_004147111.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317466148|gb|ADV27880.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 209

 Score =  269 bits (687), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 123/195 (63%), Positives = 165/195 (84%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           L LVPMVVEQT+RGER+YDIYSRLLKER++F+ G +EDH+A +I AQ+LFLEAENP+K+I
Sbjct: 9   LNLVPMVVEQTSRGERAYDIYSRLLKERVIFLVGPVEDHVANVIIAQMLFLEAENPEKDI 68

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG+VTAGMAIYDTMQ+IKP +ST C+GQAASMG++LL+AG  G R+ALPN+R+
Sbjct: 69  SLYINSPGGLVTAGMAIYDTMQYIKPDVSTICVGQAASMGAVLLAAGAAGKRYALPNSRV 128

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GGF GQA+DI+ HA++I+ ++ RLNEI  ++ G++ E + +  +RD+  SA+EA
Sbjct: 129 MIHQPLGGFQGQATDIDIHAREILSMRARLNEILAQHTGQSIETIARDTERDNFKSAAEA 188

Query: 196 CDWGVVDKVLMSRID 210
             +G+VD+VL  R D
Sbjct: 189 KAYGLVDEVLERRPD 203


>gi|229085578|ref|ZP_04217813.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock3-44]
 gi|228697726|gb|EEL50476.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock3-44]
          Length = 198

 Score =  269 bits (687), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 109/197 (55%), Positives = 141/197 (71%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E  F+  +P VVEQT  GERSYDIYSRLLK+RIV +  +I D +A+ I AQLLFLEAE+ 
Sbjct: 2   EGFFMNAIPYVVEQTKLGERSYDIYSRLLKDRIVMIGSEINDQVASSIVAQLLFLEAEDA 61

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+I LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL AG KG RFALP
Sbjct: 62  EKDIFLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLAGAKGKRFALP 121

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+ I++HQP GG  GQA++IE  A+ I+K+K  +N+I     G+  E+V +  +RD+ M+
Sbjct: 122 NSEIMIHQPLGGVKGQATEIEITAKRILKLKHDINKIISDRTGQPIEKVAEDTERDYFMT 181

Query: 192 ASEACDWGVVDKVLMSR 208
           A EA  +G+VD V+  +
Sbjct: 182 AEEAKAYGIVDAVIEKK 198


>gi|148284741|ref|YP_001248831.1| ATP-dependent protease proteolytic subunit [Orientia tsutsugamushi
           str. Boryong]
 gi|189183283|ref|YP_001937068.1| ATP-dependent Clp protease proteolytic subunit [Orientia
           tsutsugamushi str. Ikeda]
 gi|146740180|emb|CAM80416.1| ATP-dependent protease proteolytic subunit [Orientia tsutsugamushi
           str. Boryong]
 gi|189180054|dbj|BAG39834.1| ATP-dependent Clp protease proteolytic subunit [Orientia
           tsutsugamushi str. Ikeda]
          Length = 206

 Score =  269 bits (687), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 123/197 (62%), Positives = 160/197 (81%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VPMVVEQTNRGER+YDIYSRLLKERIVFV G+IEDHMA L+ AQLLFLEAE+P K+I +Y
Sbjct: 10  VPMVVEQTNRGERAYDIYSRLLKERIVFVCGEIEDHMANLVVAQLLFLEAESPDKKIFMY 69

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAGMAIYDTMQ+IK P+ T C+GQA SMGSLLL+AG+K MR  LPN+RI++H
Sbjct: 70  INSPGGAVTAGMAIYDTMQYIKSPVLTLCLGQACSMGSLLLAAGQKSMRHCLPNSRIMIH 129

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGGF GQA+DI+ HAQ+I+K+K+ +N +YV +  +  + +E++++RD+ M    A ++
Sbjct: 130 QPSGGFRGQATDIQIHAQEILKMKKIINNLYVHHTNQPLQVIEESMERDNFMDPVAAKEF 189

Query: 199 GVVDKVLMSRIDIEEKS 215
           G+VD +   R  + E+ 
Sbjct: 190 GLVDHITTERAQVAERK 206


>gi|229079979|ref|ZP_04212510.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock4-2]
 gi|229179074|ref|ZP_04306431.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           172560W]
 gi|228604442|gb|EEK61906.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           172560W]
 gi|228703358|gb|EEL55813.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock4-2]
          Length = 193

 Score =  269 bits (687), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 103/193 (53%), Positives = 138/193 (71%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ +K+I
Sbjct: 1   MNAIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I
Sbjct: 61  FLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+A EA
Sbjct: 121 MIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMTAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD V+  +
Sbjct: 181 KAYGIVDNVVTKK 193


>gi|255019392|ref|ZP_05291501.1| ATP-dependent Clp protease proteolytic subunit [Acidithiobacillus
           caldus ATCC 51756]
 gi|254971164|gb|EET28617.1| ATP-dependent Clp protease proteolytic subunit [Acidithiobacillus
           caldus ATCC 51756]
          Length = 214

 Score =  269 bits (687), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 130/214 (60%), Positives = 168/214 (78%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           M       +  E   LG VPMV+EQT RGER++DIYSRLLKER++F+ G +ED MA L+ 
Sbjct: 1   MKQSMQESRAPEIHNLGYVPMVIEQTGRGERAFDIYSRLLKERVIFLVGPVEDLMANLVV 60

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLEAENP K+I+LYINSPGG VTAG+AIYDTMQFI+P +ST C+GQAASMG++LL+
Sbjct: 61  AQLLFLEAENPDKDIALYINSPGGSVTAGLAIYDTMQFIRPAVSTVCIGQAASMGAVLLA 120

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG  G R+ALPNARI+LHQPSGG+ G A DIE HA++I++I++RLNEI V++ G++ + +
Sbjct: 121 AGAAGKRYALPNARIMLHQPSGGYQGVAHDIEIHAKEILRIRQRLNEILVEHTGQSQQRI 180

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           E+ LDRD  MSA EA D+ +VD V+  R D E+ 
Sbjct: 181 EQDLDRDFFMSAQEAKDYHLVDSVITHRGDNEDA 214


>gi|307107893|gb|EFN56134.1| hypothetical protein CHLNCDRAFT_56121 [Chlorella variabilis]
          Length = 209

 Score =  269 bits (687), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 116/192 (60%), Positives = 158/192 (82%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP+V+E T+RGER++DIYSRLL+ERIV V G I+DH++ LI AQLL+LE+ENP+K ISL
Sbjct: 1   MVPVVIESTSRGERAFDIYSRLLRERIVCVNGPIDDHLSNLIVAQLLYLESENPEKPISL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVTAG+AIYDTMQ+I+ P+ T  +GQAASM SLLL+AGE G R +LP++R+++
Sbjct: 61  YINSPGGVVTAGLAIYDTMQYIRCPVGTLAVGQAASMASLLLAAGEAGQRRSLPHSRVMV 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQA+DI   A++I+K++  LN +YVK+ G+T + VE+ L+RD  MSA EA +
Sbjct: 121 HQPSGGARGQATDIAIAAKEILKMRELLNGLYVKHTGQTAQRVEEVLERDFFMSAPEARE 180

Query: 198 WGVVDKVLMSRI 209
           +G+VD+V+  R 
Sbjct: 181 FGIVDEVIEQRP 192


>gi|194334636|ref|YP_002016496.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Prosthecochloris aestuarii DSM 271]
 gi|194312454|gb|ACF46849.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Prosthecochloris aestuarii DSM 271]
          Length = 226

 Score =  269 bits (687), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 98/213 (46%), Positives = 159/213 (74%), Gaps = 3/213 (1%)

Query: 3   FEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQ 62
           + G  ++  ++    LVPMV+E + RGER++DI+SRLL+ERI+F+   I++H+A+L+ AQ
Sbjct: 16  YSGAIEQGIQN---SLVPMVIETSGRGERAFDIFSRLLRERIIFLGTPIDEHVASLLMAQ 72

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           L+FLE+E+P+++I +YINSPGG V+AG+ IYDTMQ+I+P +ST C+G AASMG+ LL++G
Sbjct: 73  LIFLESEDPERDIYIYINSPGGSVSAGLGIYDTMQYIRPEVSTVCVGMAASMGAFLLASG 132

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
            K  R +LP++RI++HQPSGG  GQ +DI   A++I KI++ L+EI  ++ G+  +++  
Sbjct: 133 AKDKRASLPHSRIMIHQPSGGAQGQETDILIQAREIEKIRKLLDEILAQHTGQDVQKIRS 192

Query: 183 TLDRDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
             +RD  M+A EA  +G++D++   R  +++K 
Sbjct: 193 DSERDRWMNAEEAKAYGIIDQIFDRRPALDKKD 225


>gi|315499702|ref|YP_004088505.1| endopeptidase clp [Asticcacaulis excentricus CB 48]
 gi|315417714|gb|ADU14354.1| Endopeptidase Clp [Asticcacaulis excentricus CB 48]
          Length = 209

 Score =  268 bits (686), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 125/199 (62%), Positives = 162/199 (81%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E++   L+P V+EQ++RGER+YDIYSR+LKERI+F+TG  ED MAT ICAQLLFLE+ENP
Sbjct: 6   ENLTSYLIPTVIEQSSRGERAYDIYSRMLKERIIFLTGPFEDGMATSICAQLLFLESENP 65

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +KEIS+YINSPGG VT+ +AIYDTMQ+IK P++T CMG AAS GSL+L AGE G R +LP
Sbjct: 66  KKEISMYINSPGGQVTSALAIYDTMQYIKSPVTTVCMGMAASAGSLILQAGEAGQRISLP 125

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N++I++HQPSGG  G ASDIE  A+DI K K+ LNEIYVK+ G+ Y+ +E+TLDRD  M+
Sbjct: 126 NSKIMVHQPSGGARGMASDIEIQAEDIRKTKKLLNEIYVKHTGQPYDVIERTLDRDRYMT 185

Query: 192 ASEACDWGVVDKVLMSRID 210
           A+EA ++G++D V   R D
Sbjct: 186 AAEAKEFGLIDHVYEKRTD 204


>gi|194337396|ref|YP_002019190.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309873|gb|ACF44573.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 225

 Score =  268 bits (686), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 106/218 (48%), Positives = 158/218 (72%), Gaps = 5/218 (2%)

Query: 3   FEGCAKKDS-----EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMAT 57
           FE  A+K       + +   LVPMV+E + RGER++DI+SRLL+ERI+F+   I++H+A 
Sbjct: 8   FEHHARKMYSGAIEQGITNSLVPMVIETSGRGERAFDIFSRLLRERIIFLGSGIDEHVAG 67

Query: 58  LICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSL 117
           LI AQL+FLE+E+P+++I +Y+NSPGG V+AG+ IYDTMQ+I+P +ST C+G AASMG+ 
Sbjct: 68  LIMAQLIFLESEDPERDIYIYVNSPGGSVSAGLGIYDTMQYIRPEVSTVCVGMAASMGAF 127

Query: 118 LLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTY 177
           LL++G KG R +LP++RI++HQPSGG  GQ SDI   A++I KI+  L E+  K+ GK  
Sbjct: 128 LLASGAKGKRASLPHSRIMIHQPSGGAQGQESDIVIQAREIEKIRTLLEELLAKHTGKDV 187

Query: 178 EEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
           +++ +  +RD  M+A EA D+G++D +   R   E+K 
Sbjct: 188 KQIREDSERDRWMNAPEALDYGIIDAIFEKRPAPEKKD 225


>gi|294499827|ref|YP_003563527.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           megaterium QM B1551]
 gi|294349764|gb|ADE70093.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           megaterium QM B1551]
          Length = 193

 Score =  268 bits (686), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 104/192 (54%), Positives = 150/192 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L P VVEQT++GER+YDIYSRLL +R++ +TG++ D +AT I AQLLFL+AENP+K+I
Sbjct: 1   MNLTPYVVEQTSKGERAYDIYSRLLLDRVIMLTGEVTDEVATSIIAQLLFLDAENPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGG +TAGMAI+DTMQ I+  +ST C+G AASMGS LL+ G+KG RFALPN+ +
Sbjct: 61  SIYINSPGGSITAGMAIFDTMQLIRADVSTLCIGLAASMGSFLLAGGQKGKRFALPNSEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+++K  LNE+  +  G++   ++K  DRD   +A EA
Sbjct: 121 MIHQPLGGAKGQAAEIEIRAKRILRLKDHLNELLSERTGQSLSTIKKDTDRDTFFTADEA 180

Query: 196 CDWGVVDKVLMS 207
            ++G++D++L+ 
Sbjct: 181 KEYGMIDQILVH 192


>gi|295705211|ref|YP_003598286.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bacillus
           megaterium DSM 319]
 gi|294802870|gb|ADF39936.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           megaterium DSM 319]
          Length = 338

 Score =  268 bits (686), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 105/193 (54%), Positives = 150/193 (77%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
            + L P VVEQT++GER+YDIYSRLL +R++ +TG++ D +AT I AQLLFL+AENP+K+
Sbjct: 145 HMNLTPYVVEQTSKGERAYDIYSRLLLDRVIMLTGEVTDEVATSIIAQLLFLDAENPEKD 204

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           IS+YINSPGG +TAGMAI+DTMQ I+  +ST C+G AASMGS LL+ G+KG RFALPN+ 
Sbjct: 205 ISIYINSPGGSITAGMAIFDTMQLIRADVSTLCIGLAASMGSFLLAGGQKGKRFALPNSE 264

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           +++HQP GG  GQA++IE  A+ I+++K  LNE+  +  G++   ++K  DRD   +A E
Sbjct: 265 MMIHQPLGGAKGQAAEIEIRAKRILRLKDHLNELLSERTGQSLSTIKKDTDRDTFFTADE 324

Query: 195 ACDWGVVDKVLMS 207
           A ++G++DK+L+ 
Sbjct: 325 AKEYGMIDKILVH 337


>gi|257456332|ref|ZP_05621529.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Treponema
           vincentii ATCC 35580]
 gi|257446418|gb|EEV21464.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Treponema
           vincentii ATCC 35580]
          Length = 201

 Score =  268 bits (686), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 110/194 (56%), Positives = 148/194 (76%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVP V+EQT  GERSYDI+SRLLK+RI+FV G+I D  A L+ AQLLFLE++NP K+IS
Sbjct: 7   SLVPYVIEQTGNGERSYDIFSRLLKDRIIFVDGEITDATADLVVAQLLFLESQNPDKDIS 66

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAG+A+YDTMQ I P + T C+GQAASM ++LL+ G KG RFALP++R++
Sbjct: 67  LYINSPGGSVTAGLAVYDTMQHIHPNVQTICLGQAASMAAVLLAGGSKGKRFALPSSRVM 126

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQASDI   A++I+++K+ + +    + GKT   V + ++RD  MSA EAC
Sbjct: 127 IHQPWGGAQGQASDITIQAREILRLKKLIIQYCAHHTGKTESAVAEDMERDFFMSAQEAC 186

Query: 197 DWGVVDKVLMSRID 210
           ++G+VD V+  R +
Sbjct: 187 EYGIVDMVMDRRKN 200


>gi|182679147|ref|YP_001833293.1| endopeptidase Clp [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182635030|gb|ACB95804.1| Endopeptidase Clp [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 217

 Score =  268 bits (686), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 139/207 (67%), Positives = 176/207 (85%), Gaps = 1/207 (0%)

Query: 5   GCAKKDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQL 63
               +D  +++   L+P V+E T+RGER +DIYSRLL+ERI+F+TGQ+ED+MA++I AQL
Sbjct: 2   AMRDRDPIEIYDNYLIPQVIENTSRGERGFDIYSRLLRERIIFLTGQVEDNMASVIIAQL 61

Query: 64  LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           LFLEAENP+KEIS+YINSPGGVVTAG+AIYDTMQFI+P +ST C+GQAASMGSLLL AGE
Sbjct: 62  LFLEAENPKKEISMYINSPGGVVTAGLAIYDTMQFIRPKVSTLCVGQAASMGSLLLCAGE 121

Query: 124 KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
            GMR+A PN+RI++HQPSGGFSGQASDI RHA+DI+K+KRRLNEIYVK+ G+ Y+ +E T
Sbjct: 122 AGMRYATPNSRIMVHQPSGGFSGQASDILRHAEDIMKVKRRLNEIYVKHTGRDYDTIETT 181

Query: 184 LDRDHIMSASEACDWGVVDKVLMSRID 210
           LDRDH MSA E  ++G++D V+  R D
Sbjct: 182 LDRDHFMSAQETKEFGIIDNVIDKRPD 208


>gi|304316359|ref|YP_003851504.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302777861|gb|ADL68420.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 194

 Score =  268 bits (686), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 109/194 (56%), Positives = 149/194 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVEQTNRGERSYDI+SRLLK+RIVF+  +I D  A+L+ AQLLFLE E+P K+I
Sbjct: 1   MSLVPIVVEQTNRGERSYDIFSRLLKDRIVFLGEEINDVSASLVVAQLLFLEGEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +T+  AIYDTMQ+IKP + T C+G AAS G+ LL+AG KG RF+LPN+ I
Sbjct: 61  WLYINSPGGSITSAFAIYDTMQYIKPDVVTMCVGMAASAGAFLLAAGAKGKRFSLPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI+ HA+ I+K+K++LN+I  +  G+  E++E+  +RD  M   EA
Sbjct: 121 MIHQPLGGTQGQATDIKIHAERIIKMKQKLNKILSERTGQPLEKIERDTERDFFMDPEEA 180

Query: 196 CDWGVVDKVLMSRI 209
             +G++D +L+ R 
Sbjct: 181 KAYGLIDDILVRRK 194


>gi|168031792|ref|XP_001768404.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680329|gb|EDQ66766.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 201

 Score =  268 bits (686), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 117/190 (61%), Positives = 156/190 (82%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MV+E T+RGER+YDI+SRLLKERIV + G I D  A+L+ AQLL+LE+E+P K I LYIN
Sbjct: 1   MVIEHTSRGERAYDIFSRLLKERIVCIHGPISDDTASLVVAQLLYLESEHPDKPIHLYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGGVVTAG+AIYDTMQ+I+ P+ST C+GQAASMGSLLL+AG+ G R +LPNAR+++HQP
Sbjct: 61  SPGGVVTAGLAIYDTMQYIRSPVSTLCVGQAASMGSLLLAAGQPGERRSLPNARVMIHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
           SGG SGQASDI   A++I+ ++ RL+ +YVK+ G TYE++E +++RDH MS  EA  +G+
Sbjct: 121 SGGASGQASDIAIQAREILDMRARLSRLYVKHTGHTYEKIESSMERDHFMSPEEAKQFGL 180

Query: 201 VDKVLMSRID 210
           VD+V+  R +
Sbjct: 181 VDEVIERRPE 190


>gi|157124223|ref|XP_001660372.1| endopeptidase clp, putative [Aedes aegypti]
 gi|108882807|gb|EAT47032.1| endopeptidase clp, putative [Aedes aegypti]
          Length = 225

 Score =  268 bits (686), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 113/200 (56%), Positives = 153/200 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           L LVP+VVEQT RGER+YDI+SRLLKERI+ + G I D +++LI AQLLFL++EN  K I
Sbjct: 25  LNLVPIVVEQTGRGERAYDIFSRLLKERIICLMGPIHDDLSSLIVAQLLFLQSENGTKPI 84

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG VTAG+AIYDTMQ++KPP++T+C+GQA SMGSLLL+AG  GMR +LPNARI
Sbjct: 85  HMYINSPGGSVTAGLAIYDTMQYVKPPVATWCVGQACSMGSLLLAAGAPGMRHSLPNARI 144

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+DI+  A++I+K+K++L EIY K+   + + +   ++RD  ++  EA
Sbjct: 145 MIHQPSGGAQGQATDIQIQAEEILKLKKQLTEIYGKHTKTSVDVLYSKMERDTFLNPEEA 204

Query: 196 CDWGVVDKVLMSRIDIEEKS 215
              G++D VL       E S
Sbjct: 205 QALGIIDTVLEHPPSSTEGS 224


>gi|294508705|ref|YP_003572764.1| ATP-dependent Clp protease proteolytic subunit [Salinibacter ruber
           M8]
 gi|294345034|emb|CBH25812.1| ATP-dependent Clp protease proteolytic subunit [Salinibacter ruber
           M8]
          Length = 273

 Score =  268 bits (686), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 109/194 (56%), Positives = 146/194 (75%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           +    GLVPMVVEQT RGER+YDI+SRLLKERIVF+   I D +A L  AQLL+L +E+ 
Sbjct: 55  DQPMSGLVPMVVEQTTRGERAYDIFSRLLKERIVFIGTPINDQIANLTVAQLLYLASESS 114

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K I+LYINSPGGV+ +G+ +YDTMQ+I  P+ST C+G AASMGS+LL+AGE   R  LP
Sbjct: 115 EKPINLYINSPGGVIYSGLGVYDTMQYIGAPVSTICVGLAASMGSVLLAAGEDDSRACLP 174

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+R+++HQP GG  GQASDIE  A++I+ +K RL EI   + G+  +++E   DR++ MS
Sbjct: 175 NSRVMIHQPMGGAEGQASDIEIQAEEIMWLKERLYEILALHTGQDIDQIEADADRNYWMS 234

Query: 192 ASEACDWGVVDKVL 205
           A EA ++G+VD VL
Sbjct: 235 AEEAEEYGLVDNVL 248


>gi|66472380|ref|NP_001018520.1| putative ATP-dependent Clp protease proteolytic subunit,
           mitochondrial [Danio rerio]
 gi|63102525|gb|AAH95769.1| ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit
           homolog (E. coli) [Danio rerio]
          Length = 266

 Score =  268 bits (686), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 118/192 (61%), Positives = 155/192 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
             L+P+VVEQT RGER+YDIYSRLL+ERI+ V G I+D +A+L+ AQLLFL++E+  K I
Sbjct: 27  SPLIPIVVEQTGRGERAYDIYSRLLRERIICVMGPIDDSVASLVIAQLLFLQSESNNKPI 86

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVT+G AIYDTMQ+I  PIST+C+GQAASMGSLLL+AG  GMR +LPNARI
Sbjct: 87  HMYINSPGGVVTSGPAIYDTMQYILNPISTWCVGQAASMGSLLLAAGTAGMRHSLPNARI 146

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+DI   A++I+K+KR++N IY K+ G+  E +E  ++RD  MS  EA
Sbjct: 147 MVHQPSGGARGQATDIAIQAEEILKLKRQINNIYSKHTGQLLETIESVMERDRYMSPMEA 206

Query: 196 CDWGVVDKVLMS 207
            D+G++DKVL+ 
Sbjct: 207 QDFGIIDKVLVH 218


>gi|321468091|gb|EFX79078.1| hypothetical protein DAPPUDRAFT_231060 [Daphnia pulex]
          Length = 235

 Score =  268 bits (686), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 106/191 (55%), Positives = 153/191 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVP+V+EQT RGER+YDIYSRLLKERI+ V G I D +++L+ AQLLFL++E+ +K + 
Sbjct: 26  PLVPIVIEQTGRGERAYDIYSRLLKERIICVMGPITDDLSSLVVAQLLFLQSESNKKPVH 85

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VTAG+ IYDTMQ++ PPI+T+C+GQA SM SLLL++G  GMR++LPN+RI+
Sbjct: 86  MYINSPGGSVTAGLGIYDTMQYVLPPIATWCVGQACSMASLLLASGSPGMRYSLPNSRIM 145

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  GQA+DI+  A++I+K+K+++N++Y K+ G     +E  ++RD  MS  EA 
Sbjct: 146 IHQPSGGVQGQATDIQIQAEEIMKLKKQINQLYGKHTGLQLSVIESNMERDKFMSPVEAK 205

Query: 197 DWGVVDKVLMS 207
           ++G++DK+L  
Sbjct: 206 EFGLIDKILEH 216


>gi|190570982|ref|YP_001975340.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|213019499|ref|ZP_03335305.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|226706556|sp|B3CLB1|CLPP_WOLPP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|190357254|emb|CAQ54678.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|212994921|gb|EEB55563.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 208

 Score =  268 bits (686), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 119/197 (60%), Positives = 168/197 (85%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P+VVEQT+RGER+YDIYSRL+KERI+FVTG IED+MA++I AQLLFLE+ENP K+I
Sbjct: 1   MTLIPIVVEQTSRGERAYDIYSRLVKERIIFVTGPIEDNMASVIVAQLLFLESENPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG++IYDTMQ+I P +ST C+GQAASMGSLLL+AG +G R++LP++RI
Sbjct: 61  CMYINSPGGVVTAGLSIYDTMQYINPDVSTLCIGQAASMGSLLLTAGAEGKRYSLPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG+ GQA+DIE HA +I+++K++LN+IY K+ G + +++E+ ++RD  M   EA
Sbjct: 121 MIHQPSGGYHGQATDIEIHANEILRVKKKLNQIYEKHTGNSLKKIEEMMERDKFMDPEEA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
              G++D+V+  R D++
Sbjct: 181 MKTGLIDRVIAERKDMK 197


>gi|58616924|ref|YP_196123.1| ATP-dependent Clp protease proteolytic subunit [Ehrlichia
           ruminantium str. Gardel]
 gi|67460150|sp|Q5FFG7|CLPP_EHRRG RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|58416536|emb|CAI27649.1| ATP-dependent CLP protease proteolytic subunit [Ehrlichia
           ruminantium str. Gardel]
          Length = 198

 Score =  268 bits (686), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 135/197 (68%), Positives = 172/197 (87%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVE T+RGER+YDIY+RLLKERI+F+TG IED MA+L+ AQL+FLEAENP+K+I
Sbjct: 1   MTLVPMVVEPTSRGERAYDIYTRLLKERIIFITGPIEDQMASLVVAQLIFLEAENPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGGVVTAG++IYDTMQ++KP I+T C+GQAASMGSLLL+AGEKGMR ALPN+RI
Sbjct: 61  SMYINSPGGVVTAGLSIYDTMQYVKPRIATLCLGQAASMGSLLLAAGEKGMRCALPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGGF GQA+DIE HA++I+ IK RLN IYVK+ G+   EV  +++RD+ MSA  A
Sbjct: 121 MIHQPSGGFQGQATDIEIHAKEILNIKSRLNYIYVKHTGRELSEVVASMERDNFMSADSA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
            D+G++DKV+  R+DIE
Sbjct: 181 QDFGIIDKVIEKRLDIE 197


>gi|206971861|ref|ZP_03232810.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus AH1134]
 gi|206733246|gb|EDZ50419.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus AH1134]
          Length = 193

 Score =  268 bits (686), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 103/193 (53%), Positives = 138/193 (71%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ +K+I
Sbjct: 1   MNAIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I
Sbjct: 61  FLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+A EA
Sbjct: 121 MIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMTAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD V+  +
Sbjct: 181 KAYGIVDDVVTKK 193


>gi|30262760|ref|NP_845137.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. Ames]
 gi|47528081|ref|YP_019430.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49185606|ref|YP_028858.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bacillus
           anthracis str. Sterne]
 gi|49479126|ref|YP_036877.1| ATP-dependent Clp protease, proteolytic subunit [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|165868336|ref|ZP_02212996.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0488]
 gi|167632654|ref|ZP_02390981.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0442]
 gi|167637842|ref|ZP_02396121.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0193]
 gi|170685514|ref|ZP_02876738.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0465]
 gi|170704851|ref|ZP_02895317.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0389]
 gi|177649633|ref|ZP_02932635.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0174]
 gi|190565733|ref|ZP_03018653.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis Tsiankovskii-I]
 gi|196032272|ref|ZP_03099686.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus W]
 gi|196041667|ref|ZP_03108958.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus NVH0597-99]
 gi|218903911|ref|YP_002451745.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus AH820]
 gi|227814400|ref|YP_002814409.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. CDC 684]
 gi|228927840|ref|ZP_04090888.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228946399|ref|ZP_04108720.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229122335|ref|ZP_04251549.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           95/8201]
 gi|229600104|ref|YP_002867067.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0248]
 gi|254685352|ref|ZP_05149212.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. CNEVA-9066]
 gi|254737808|ref|ZP_05195511.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. Western North America USA6153]
 gi|254743018|ref|ZP_05200703.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. Kruger B]
 gi|254752122|ref|ZP_05204159.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. Vollum]
 gi|254760643|ref|ZP_05212667.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. Australia 94]
 gi|300118751|ref|ZP_07056477.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus SJ1]
 gi|301054310|ref|YP_003792521.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
           CI]
 gi|67460478|sp|Q6HHU9|CLPP1_BACHK RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|67460529|sp|Q81PL4|CLPP1_BACAN RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|30257392|gb|AAP26623.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. Ames]
 gi|47503229|gb|AAT31905.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49179533|gb|AAT54909.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. Sterne]
 gi|49330682|gb|AAT61328.1| ATP-dependent Clp protease, proteolytic subunit [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|164715062|gb|EDR20579.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0488]
 gi|167514391|gb|EDR89758.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0193]
 gi|167532952|gb|EDR95588.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0442]
 gi|170130652|gb|EDS99513.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0389]
 gi|170670874|gb|EDT21613.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0465]
 gi|172084707|gb|EDT69765.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0174]
 gi|190563760|gb|EDV17725.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis Tsiankovskii-I]
 gi|195995023|gb|EDX58977.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus W]
 gi|196027436|gb|EDX66052.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus NVH0597-99]
 gi|218536563|gb|ACK88961.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus AH820]
 gi|227007231|gb|ACP16974.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. CDC 684]
 gi|228661184|gb|EEL16810.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           95/8201]
 gi|228813262|gb|EEM59562.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228831903|gb|EEM77492.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|229264512|gb|ACQ46149.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A0248]
 gi|298723908|gb|EFI64624.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus SJ1]
 gi|300376479|gb|ADK05383.1| ATP-dependent Clp protease, proteolytic subunit [Bacillus cereus
           biovar anthracis str. CI]
 gi|324326757|gb|ADY22017.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 193

 Score =  268 bits (686), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 104/193 (53%), Positives = 138/193 (71%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P VVEQT  GERSYDIYSRLLK+RIV +  +I D +A+ + AQLLFLEAE+ +K+I
Sbjct: 1   MNAIPYVVEQTKLGERSYDIYSRLLKDRIVIIGSEINDQVASSVVAQLLFLEAEDAEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I
Sbjct: 61  FLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+A EA
Sbjct: 121 MIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMTAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD V+  +
Sbjct: 181 KAYGIVDDVVTKK 193


>gi|304391391|ref|ZP_07373333.1| Clp protease [Ahrensia sp. R2A130]
 gi|303295620|gb|EFL89978.1| Clp protease [Ahrensia sp. R2A130]
          Length = 212

 Score =  268 bits (686), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 146/207 (70%), Positives = 178/207 (85%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D     + LVPMVVEQTNRGER+YDI+SRLLKERI+F+TG IED M+ L+CAQLLFLEA
Sbjct: 2   QDPIQTAMNLVPMVVEQTNRGERAYDIFSRLLKERIIFITGPIEDGMSVLVCAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEISLYINSPGGVVTAGMAIYDTMQFIKPP++T CMGQA SMGSLLL+AGEK MRF
Sbjct: 62  ENPKKEISLYINSPGGVVTAGMAIYDTMQFIKPPVATLCMGQACSMGSLLLTAGEKDMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
            LP AR++LHQPSGG  G+ SDIER+  DI+K+K+RLN+IYVK+ G+  E +E+TLDRDH
Sbjct: 122 ILPQARVMLHQPSGGMQGKVSDIERNYTDIIKVKQRLNDIYVKHTGQDLETIERTLDRDH 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIEEKS 215
            M+A E+ ++GVVDKV+ SR +IE ++
Sbjct: 182 FMNAEESVEFGVVDKVIASRDEIEGEA 208


>gi|325680788|ref|ZP_08160326.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Ruminococcus albus 8]
 gi|324107568|gb|EGC01846.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Ruminococcus albus 8]
          Length = 196

 Score =  268 bits (686), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 107/196 (54%), Positives = 150/196 (76%), Gaps = 3/196 (1%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP VVEQT+RGERS DI+SRLL +RI+ +   I+DH+A+L+ AQLLFLE+++P+K+I
Sbjct: 1   MALVPYVVEQTSRGERSMDIFSRLLNDRIIMLCEPIDDHVASLVTAQLLFLESQDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMAIYDTM +IK  ++T CMG AASMG+ LLS G KG RF+LPN+ I
Sbjct: 61  DLYINSPGGSVTAGMAIYDTMNYIKCDVNTICMGMAASMGAFLLSCGTKGKRFSLPNSEI 120

Query: 136 LLHQP---SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           ++HQP    GG SGQ +D++ H+  +V  + +LN+I  +N GK+ E++    +RD+ +SA
Sbjct: 121 MIHQPLIGGGGISGQCTDVKIHSDHLVATREKLNKILAENTGKSIEQIAIDTERDNYLSA 180

Query: 193 SEACDWGVVDKVLMSR 208
            EA ++G++DKV+  R
Sbjct: 181 QEAMEYGLIDKVISKR 196


>gi|42527179|ref|NP_972277.1| ATP-dependent Clp protease proteolytic subunit [Treponema denticola
           ATCC 35405]
 gi|67460504|sp|Q73M38|CLPP1_TREDE RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|41817603|gb|AAS12188.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Treponema
           denticola ATCC 35405]
          Length = 197

 Score =  268 bits (685), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 110/196 (56%), Positives = 147/196 (75%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
              LVP V+EQT  GERSYDI+SRLLK+RI+FV G+I D  A L+ AQLLFLEA+NP K+
Sbjct: 1   MSTLVPYVIEQTGNGERSYDIFSRLLKDRIIFVDGEINDMSADLVVAQLLFLEAQNPDKD 60

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           ISLYINSPGG VTAG+AIYDTMQ I+P + T C+GQ ASMG++LL+ G K  R+ALP++R
Sbjct: 61  ISLYINSPGGSVTAGLAIYDTMQHIRPDVQTICLGQCASMGAVLLAGGAKNKRYALPSSR 120

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           +++HQP GG  GQA DI   A++IV++K+   + + +N GKT ++V   ++RD  MSA E
Sbjct: 121 VMIHQPWGGVQGQAVDINIQAKEIVRLKKLTIKYFAENTGKTEKQVAADMERDFFMSAEE 180

Query: 195 ACDWGVVDKVLMSRID 210
           A  +G++D V+  R D
Sbjct: 181 ALTYGIIDTVMNRRKD 196


>gi|157828616|ref|YP_001494858.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
           rickettsii str. 'Sheila Smith']
 gi|166214706|sp|A8GSH5|CLPP_RICRS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|157801097|gb|ABV76350.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
           rickettsii str. 'Sheila Smith']
          Length = 201

 Score =  268 bits (685), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 124/193 (64%), Positives = 162/193 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP+V+E T+RGER+YDIYSRLLKERI+FV   +EDHMA LI AQLLFLEAENP+K+I
Sbjct: 1   MSYVPIVIEPTSRGERAYDIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAENPKKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG+AIYDTMQ+IKP ++T C+GQA SMGSLLL  GEKGMR++LP++RI
Sbjct: 61  YMYINSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSLLLCGGEKGMRYSLPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG+ GQA+DIE HAQ+ +KIKR LNE+Y K+  +  + +EK+++RD+ MS  EA
Sbjct: 121 MIHQPSGGYKGQATDIEIHAQETLKIKRLLNELYSKHTEQELQHIEKSMERDNFMSPEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD ++ SR
Sbjct: 181 KKFGLVDNIISSR 193


>gi|262037349|ref|ZP_06010814.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Leptotrichia
           goodfellowii F0264]
 gi|261748606|gb|EEY35980.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Leptotrichia
           goodfellowii F0264]
          Length = 189

 Score =  268 bits (685), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 108/186 (58%), Positives = 152/186 (81%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P+V+E   RGERSYDIYSRLLK+RI+F+ G++ED++A  I AQLLFL+A++ +K+I +YI
Sbjct: 4   PVVIENDGRGERSYDIYSRLLKDRIIFLGGEVEDNIANSIIAQLLFLDAQDKEKDIVMYI 63

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGGVVTAG+AIYDTM+ IK  +ST C+GQAASMG++LL++G KG R++LPN+R+++HQ
Sbjct: 64  NSPGGVVTAGLAIYDTMRHIKADVSTVCIGQAASMGAVLLASGAKGKRYSLPNSRVMIHQ 123

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           PSGG  GQA+DI+  A++I KIK+ LNEI  +  GK  EE+ +  +RD+ MS+ EA  +G
Sbjct: 124 PSGGARGQATDIQIQAKEIEKIKKTLNEILSEATGKPVEEIYRDTERDNFMSSEEALAYG 183

Query: 200 VVDKVL 205
           ++DK+L
Sbjct: 184 IIDKIL 189


>gi|229018102|ref|ZP_04174977.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           AH1273]
 gi|229024283|ref|ZP_04180742.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           AH1272]
 gi|228737058|gb|EEL87594.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           AH1272]
 gi|228743193|gb|EEL93318.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           AH1273]
          Length = 198

 Score =  268 bits (685), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 105/193 (54%), Positives = 140/193 (72%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ +K+I
Sbjct: 6   MNAIPYVVEQTKLGERSYDIYSRLLKDRIIMIGSEINDQVASSVVAQLLFLEAEDAEKDI 65

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL AG KG RFALPN+ I
Sbjct: 66  FLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLAGAKGKRFALPNSEI 125

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K+K  +N+I  +  G+  E+V    +RD+ M+A EA
Sbjct: 126 MIHQPLGGVKGQATEIEITAKRILKLKHDINKIIAERTGQPVEKVAHDTERDYFMTAVEA 185

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD V+  +
Sbjct: 186 KEYGIVDAVIEKK 198


>gi|229151000|ref|ZP_04279211.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           m1550]
 gi|228632560|gb|EEK89178.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           m1550]
          Length = 198

 Score =  268 bits (685), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 103/193 (53%), Positives = 138/193 (71%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ +K+I
Sbjct: 6   MNAIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDI 65

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I
Sbjct: 66  FLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEI 125

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+A EA
Sbjct: 126 MIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMTAEEA 185

Query: 196 CDWGVVDKVLMSR 208
             +G+VD V+  +
Sbjct: 186 KAYGIVDNVVTKK 198


>gi|154247518|ref|YP_001418476.1| endopeptidase Clp [Xanthobacter autotrophicus Py2]
 gi|226706559|sp|A7ILC6|CLPP_XANP2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|154161603|gb|ABS68819.1| Endopeptidase Clp [Xanthobacter autotrophicus Py2]
          Length = 211

 Score =  268 bits (685), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 139/209 (66%), Positives = 177/209 (84%), Gaps = 2/209 (0%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           +D  D ++  L+PMVVEQTNRGERSYDI+SRLLKERI+F+TG +ED M+TL  AQLLFLE
Sbjct: 2   RDPVDTYMNYLIPMVVEQTNRGERSYDIFSRLLKERIIFLTGPVEDGMSTLAVAQLLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           A+NP+KEIS+YINSPGGVVT+G+AIYDTMQFIKP +ST C+GQAASMGSLLL+AGEK MR
Sbjct: 62  ADNPKKEISMYINSPGGVVTSGLAIYDTMQFIKPAVSTLCIGQAASMGSLLLTAGEKDMR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           FALPNARI++HQPSGGF GQ +DI  HAQ+I+ +KRRLNEIYVK+ G++ +++E  L+RD
Sbjct: 122 FALPNARIMVHQPSGGFQGQVTDIMLHAQEILNLKRRLNEIYVKHTGRSMDKIEDALERD 181

Query: 188 HIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           + M+A  A D+G++D V+  R   ++ SK
Sbjct: 182 NFMTAKAALDFGLIDAVIDQRP-TDDTSK 209


>gi|228915390|ref|ZP_04078983.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228844333|gb|EEM89391.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 198

 Score =  268 bits (685), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 104/193 (53%), Positives = 138/193 (71%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P VVEQT  GERSYDIYSRLLK+RIV +  +I D +A+ + AQLLFLEAE+ +K+I
Sbjct: 6   MNAIPYVVEQTKLGERSYDIYSRLLKDRIVIIGSEINDQVASSVVAQLLFLEAEDAEKDI 65

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I
Sbjct: 66  FLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGTKGKRFALPNSEI 125

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+A EA
Sbjct: 126 MIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMTAEEA 185

Query: 196 CDWGVVDKVLMSR 208
             +G+VD V+  +
Sbjct: 186 KAYGIVDDVVTKK 198


>gi|193212075|ref|YP_001998028.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Chlorobaculum
           parvum NCIB 8327]
 gi|193085552|gb|ACF10828.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Chlorobaculum
           parvum NCIB 8327]
          Length = 225

 Score =  268 bits (685), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 97/195 (49%), Positives = 149/195 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMV+E + RGER++DI+SRLL+ERI+F+   I++H+A LI AQL+FLE+E+P+++I +
Sbjct: 28  LVPMVIETSGRGERAFDIFSRLLRERIIFLGSPIDEHVAGLIMAQLIFLESEDPERDIYI 87

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG V+AG+ IYDTMQ+I+P IST C+G AASMG+ LL++G  G R +LP++RI++
Sbjct: 88  YVNSPGGSVSAGLGIYDTMQYIRPDISTVCVGMAASMGAFLLASGTAGKRASLPHSRIMI 147

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQ +DI   A++I KI+  L ++  K+ G+  + + +  +RD  M+A+EA +
Sbjct: 148 HQPSGGAQGQETDILIQAREIEKIRHLLEDLLAKHTGQNVKTIREDSERDRWMNATEAKE 207

Query: 198 WGVVDKVLMSRIDIE 212
           +G++D++   R   E
Sbjct: 208 YGLIDQIFEKRPAPE 222


>gi|199597270|ref|ZP_03210701.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           rhamnosus HN001]
 gi|229551778|ref|ZP_04440503.1| endopeptidase Clp [Lactobacillus rhamnosus LMS2-1]
 gi|258507926|ref|YP_003170677.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           rhamnosus GG]
 gi|258539175|ref|YP_003173674.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           rhamnosus Lc 705]
 gi|199591786|gb|EDY99861.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           rhamnosus HN001]
 gi|229314832|gb|EEN80805.1| endopeptidase Clp [Lactobacillus rhamnosus LMS2-1]
 gi|257147853|emb|CAR86826.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           rhamnosus GG]
 gi|257150851|emb|CAR89823.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           rhamnosus Lc 705]
 gi|259649253|dbj|BAI41415.1| Clp protease proteolytic subunit [Lactobacillus rhamnosus GG]
 gi|328465358|gb|EGF36608.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           rhamnosus MTCC 5462]
          Length = 196

 Score =  268 bits (685), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 105/193 (54%), Positives = 152/193 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP VVEQT+RGER+YDIYSRLLK+RI+ ++G++ D MA  + AQLLFL+A++ +K+I L
Sbjct: 2   LVPTVVEQTSRGERAYDIYSRLLKDRIIMLSGEVNDQMANSVIAQLLFLDAQDSEKDIYL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+T+G+A+ DTM FIK  + T  +G AASM S+LL+ G KG RFALPN+ IL+
Sbjct: 62  YINSPGGVITSGLAMLDTMNFIKSDVQTIAIGMAASMASVLLAGGTKGKRFALPNSTILI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQ ++IE  A++I+K ++++N+I     G+T E+++K  +RDH MSA EA D
Sbjct: 122 HQPSGGAQGQQTEIEIAAEEILKTRKKMNQILADATGQTVEQIKKDTERDHYMSAQEAKD 181

Query: 198 WGVVDKVLMSRID 210
           +G++D +L+++ +
Sbjct: 182 YGLIDDILVNKNN 194


>gi|189345948|ref|YP_001942477.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Chlorobium
           limicola DSM 245]
 gi|189340095|gb|ACD89498.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Chlorobium
           limicola DSM 245]
          Length = 225

 Score =  268 bits (685), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 100/202 (49%), Positives = 155/202 (76%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E +   LVPMV+E + RGER++DI+SRLL+ERI+F+   I++H+A L+ AQL+FLE+E+P
Sbjct: 22  EGIRNTLVPMVIETSGRGERAFDIFSRLLRERIIFLGSGIDEHVAGLVMAQLIFLESEDP 81

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +++I +YINSPGG V+AG+ IYDTMQ+I+P I+T C+G AASMG+ LL++G KG R +LP
Sbjct: 82  ERDIFIYINSPGGSVSAGLGIYDTMQYIRPDIATVCVGMAASMGAFLLASGTKGKRASLP 141

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           ++RI++HQPSGG  GQ +DI   A++I KI++ L E+  K+ G+  +++ +  +RD  M+
Sbjct: 142 HSRIMIHQPSGGAQGQETDIIIQAREIEKIRKLLEELLAKHTGRDVQQIREDSERDRWMN 201

Query: 192 ASEACDWGVVDKVLMSRIDIEE 213
           A+EA ++G++D+V   R   E+
Sbjct: 202 AAEALEYGIIDQVFEKRPAPEK 223


>gi|229133677|ref|ZP_04262503.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           BDRD-ST196]
 gi|229167385|ref|ZP_04295123.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           AH621]
 gi|228615947|gb|EEK73034.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           AH621]
 gi|228649712|gb|EEL05721.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           BDRD-ST196]
          Length = 198

 Score =  268 bits (685), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 105/197 (53%), Positives = 141/197 (71%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E   + ++P V+EQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ 
Sbjct: 2   EGFIMSVIPYVIEQTKLGERSYDIYSRLLKDRIIMIGSEINDQVASSVVAQLLFLEAEDA 61

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+I LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL AG KG RFALP
Sbjct: 62  EKDIFLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLAGAKGKRFALP 121

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+ I++HQP GG  GQA++IE  A+ I+K+K  +N+I     G+  E+V    +RD+ M+
Sbjct: 122 NSEIMIHQPLGGVKGQATEIEITAKRILKLKHDINKIISDRTGQPVEKVAHDTERDYFMT 181

Query: 192 ASEACDWGVVDKVLMSR 208
           A EA ++G+VD V+  +
Sbjct: 182 AVEAKEYGIVDAVIEKK 198


>gi|218672149|ref|ZP_03521818.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli
           GR56]
          Length = 203

 Score =  268 bits (685), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 120/198 (60%), Positives = 163/198 (82%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMV+EQ++RGERS+DIYSRLL+ERI+F+ G++ D ++ L+CAQLLFLEAENP+K I
Sbjct: 5   MQLVPMVIEQSSRGERSFDIYSRLLRERIIFLNGEVNDTVSALVCAQLLFLEAENPKKPI 64

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGGVVT+G+A+YDTM+FI+ P+ T CMG A SMGS LL AGE G R ALPNA I
Sbjct: 65  NLYINSPGGVVTSGLAMYDTMRFIRAPVHTLCMGTARSMGSFLLMAGEAGERAALPNASI 124

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQPSGGF GQASD+  HA++I+K K+R+  +Y ++CG++YE+ E+ +DRD  M+A EA
Sbjct: 125 LIHQPSGGFQGQASDMLIHAEEILKTKQRMTRLYAEHCGRSYEDFERGMDRDRFMTAEEA 184

Query: 196 CDWGVVDKVLMSRIDIEE 213
            +WG++D++L  R D + 
Sbjct: 185 LEWGLIDRILKVREDTDS 202


>gi|329890026|ref|ZP_08268369.1| clp protease family protein [Brevundimonas diminuta ATCC 11568]
 gi|328845327|gb|EGF94891.1| clp protease family protein [Brevundimonas diminuta ATCC 11568]
          Length = 213

 Score =  268 bits (685), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 139/206 (67%), Positives = 170/206 (82%), Gaps = 1/206 (0%)

Query: 9   KDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           +D  D     LVPMVVEQ++RGERS+DI+SRLL+ERI+F+TG  ED MA+LICAQLLFLE
Sbjct: 2   RDPIDYISNNLVPMVVEQSSRGERSFDIFSRLLRERIIFLTGPFEDGMASLICAQLLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           +ENP+KEIS+YINSPGG VT+ +AIYDTMQ+IK P+ST  MG AAS GSL+L+AGE G R
Sbjct: 62  SENPKKEISMYINSPGGQVTSALAIYDTMQYIKSPVSTVVMGMAASAGSLILTAGEAGQR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
            ALPNAR+++HQPSGGF G ASDIERHA+DI+  KRRLNEIYV++ G+TYEEVE+TLDRD
Sbjct: 122 IALPNARVMVHQPSGGFRGTASDIERHAEDIIATKRRLNEIYVQHTGRTYEEVERTLDRD 181

Query: 188 HIMSASEACDWGVVDKVLMSRIDIEE 213
           H M+A EA  WG+VD V   R   ++
Sbjct: 182 HFMTAEEAKAWGIVDHVYDKRTQADD 207


>gi|158336585|ref|YP_001517759.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acaryochloris
           marina MBIC11017]
 gi|158306826|gb|ABW28443.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acaryochloris
           marina MBIC11017]
          Length = 238

 Score =  268 bits (685), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 112/210 (53%), Positives = 148/210 (70%), Gaps = 8/210 (3%)

Query: 14  VFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQ-------IEDHMATLICAQLLFL 66
               +VPMVVEQ+ RGER++DIYSRLL+ERIVF+ G        I+D +A  I AQLLFL
Sbjct: 24  PPRNIVPMVVEQSGRGERAFDIYSRLLRERIVFLGGGGSANGGGIDDAVADAIVAQLLFL 83

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E+ENP+++I LYINSPGG +TAGMAIYDT+Q I+P + T C G AASMG+ LL AG  G 
Sbjct: 84  ESENPEQDIYLYINSPGGSITAGMAIYDTIQHIRPDVCTICFGLAASMGAFLLCAGTAGK 143

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           R ALPNARI++HQP GG  GQA DIE  A++I+ +K  LN +   + G+ +E +E   +R
Sbjct: 144 RMALPNARIMIHQPLGGAQGQAVDIEIRAKEILYLKNNLNHLMAGHTGQPFERIEADTER 203

Query: 187 DHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           D  MSA EA  +G++D+VL  R ++   S+
Sbjct: 204 DFFMSAEEAQKYGLIDQVLT-RQNLPNHSE 232


>gi|21674371|ref|NP_662436.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Chlorobium
           tepidum TLS]
 gi|25008303|sp|Q8KC73|CLPP_CHLTE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|21647550|gb|AAM72778.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Chlorobium
           tepidum TLS]
          Length = 225

 Score =  268 bits (685), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 98/198 (49%), Positives = 148/198 (74%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMV+E + RGER++DI+SRLL+ERI+F+   I++H+A LI AQL+FLE+E+P+++I +
Sbjct: 28  LVPMVIETSGRGERAFDIFSRLLRERIIFLGSPIDEHVAGLIIAQLIFLESEDPERDIYI 87

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG+ IYDTMQ+I+P IST C+G AASMG+ LL++G  G R +LP++RI++
Sbjct: 88  YINSPGGSVSAGLGIYDTMQYIRPDISTVCVGMAASMGAFLLASGTSGKRASLPHSRIMI 147

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQ +DI   A++I KI+  L ++  K+ G+    + +  +RD  MSA EA +
Sbjct: 148 HQPSGGAQGQETDILIQAREIEKIRHLLEDLLAKHTGQEVSRIREDSERDRWMSAVEAKE 207

Query: 198 WGVVDKVLMSRIDIEEKS 215
           +G++D++   R   + + 
Sbjct: 208 YGLIDQIFEKRPAPKSEE 225


>gi|294011932|ref|YP_003545392.1| ATP-dependent Clp protease protease subunit [Sphingobium japonicum
           UT26S]
 gi|292675262|dbj|BAI96780.1| ATP-dependent Clp protease protease subunit [Sphingobium japonicum
           UT26S]
          Length = 211

 Score =  268 bits (685), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 126/205 (61%), Positives = 165/205 (80%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
            D    LVP+V+EQ+NRGERS+DIYSRLL+ERI+FVTGQ+EDHMA+LI AQLLFLE+ENP
Sbjct: 6   SDPMAALVPIVIEQSNRGERSFDIYSRLLRERIIFVTGQVEDHMASLIVAQLLFLESENP 65

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+I +YINSPGGVVT+GMAI+DTM++I+P + T C+GQAASMGS LL+AGE G R AL 
Sbjct: 66  KKDIWMYINSPGGVVTSGMAIHDTMKYIRPQVGTVCIGQAASMGSFLLAAGEPGKRIALS 125

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           NARI++HQPSGG  G ASDIE  A++I++I+ RLN +YV+  G++ EEVE+ +DRD  + 
Sbjct: 126 NARIMVHQPSGGAQGMASDIEIQAKEILRIRSRLNNLYVQYTGRSLEEVERAMDRDTFLE 185

Query: 192 ASEACDWGVVDKVLMSRIDIEEKSK 216
           A EA  +G+VD+V   R  + E  +
Sbjct: 186 AEEAKAFGLVDEVFDRRPAMAETPE 210


>gi|167769421|ref|ZP_02441474.1| hypothetical protein ANACOL_00751 [Anaerotruncus colihominis DSM
           17241]
 gi|167668389|gb|EDS12519.1| hypothetical protein ANACOL_00751 [Anaerotruncus colihominis DSM
           17241]
          Length = 189

 Score =  268 bits (685), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 105/188 (55%), Positives = 142/188 (75%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MVVEQTNRGERSYDI+SRLL +RIV +  ++ D  A+L+ AQLL+LE ++P K+I+LYIN
Sbjct: 1   MVVEQTNRGERSYDIFSRLLNDRIVMLCDEVNDTTASLVVAQLLYLEGQDPDKDINLYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGG VTAGMAIYDTM F+K  +ST C+G AASMG+ L  AG KG R ALPNA I++HQP
Sbjct: 61  SPGGSVTAGMAIYDTMNFVKCDVSTTCIGLAASMGAFLFGAGAKGKRIALPNAEIMIHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
           SGG  GQASD++ H   I++ + +LN I  +  G+  E +E+  +RD+ M+A +A ++G+
Sbjct: 121 SGGARGQASDMKIHTDWIIRTREKLNRIMAEQTGQPIEVIERDTERDNFMTAQQAMEYGL 180

Query: 201 VDKVLMSR 208
           VDK++  R
Sbjct: 181 VDKIIAHR 188


>gi|85707624|ref|ZP_01038690.1| ATP-dependent Clp protease [Erythrobacter sp. NAP1]
 gi|85689158|gb|EAQ29161.1| ATP-dependent Clp protease [Erythrobacter sp. NAP1]
          Length = 235

 Score =  268 bits (685), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 132/207 (63%), Positives = 167/207 (80%), Gaps = 1/207 (0%)

Query: 4   EGCAKKDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQ 62
            G   +   D   G LVP VVEQ++RGER++DI+SRLL+ERIVFVTGQ+ED MA+LI AQ
Sbjct: 12  HGTQGQFERDPLTGALVPTVVEQSSRGERAFDIFSRLLRERIVFVTGQVEDTMASLIVAQ 71

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           LLFLE+ENP K IS+YINSPGGVVTAGMAI+DTMQ+IKP +ST C+GQAASMGS LL+AG
Sbjct: 72  LLFLESENPSKPISMYINSPGGVVTAGMAIHDTMQYIKPRVSTVCIGQAASMGSFLLAAG 131

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
           E GMR ALPNARI++HQPSGG  G ASDIE  A++I++I+ R+N++YVK  G++ +E+EK
Sbjct: 132 EPGMRVALPNARIMVHQPSGGARGMASDIEIQAREILRIRSRMNDLYVKYTGQSLDEIEK 191

Query: 183 TLDRDHIMSASEACDWGVVDKVLMSRI 209
            +DRD  + A EA  +G+VDKV  +R 
Sbjct: 192 AMDRDTFLEAEEAMKFGLVDKVFETRP 218


>gi|150018814|ref|YP_001311068.1| endopeptidase Clp [Clostridium beijerinckii NCIMB 8052]
 gi|149905279|gb|ABR36112.1| Endopeptidase Clp [Clostridium beijerinckii NCIMB 8052]
          Length = 192

 Score =  268 bits (685), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 114/192 (59%), Positives = 151/192 (78%), Gaps = 2/192 (1%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VPMV+EQT+RGERSYDIYSRLLKERI+ ++ Q+ D  A++I +QLLFLE+ENP  +I
Sbjct: 1   MSYVPMVIEQTSRGERSYDIYSRLLKERIIMLSDQVSDSTASIITSQLLFLESENPDGDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG +TAGMAIYDTMQ+IKP +ST C+G AASMGS LL+AG  G R+ALPN+ I
Sbjct: 61  HFYINSPGGSITAGMAIYDTMQYIKPDVSTICLGLAASMGSFLLAAGAPGKRYALPNSEI 120

Query: 136 LLHQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           L+HQPS  GGF GQA+DI  H + ++K K ++N+IY +   K  EE+E+ ++RD+ MSA 
Sbjct: 121 LIHQPSVHGGFQGQATDIRIHTEWLLKTKNKINKIYSEKTKKPIEEIERDMERDYFMSAK 180

Query: 194 EACDWGVVDKVL 205
           EA  +G++DK+L
Sbjct: 181 EALSYGIIDKIL 192


>gi|307299175|ref|ZP_07578976.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306914971|gb|EFN45357.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 205

 Score =  268 bits (685), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 104/202 (51%), Positives = 153/202 (75%)

Query: 14  VFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQK 73
                VP VVE   RGER +DIY++LL ERIVF+   I+D ++ ++ AQLLFLE+++P+K
Sbjct: 4   NMAPFVPYVVEDRGRGERIFDIYTKLLSERIVFLGWPIDDEVSNIVVAQLLFLESQDPEK 63

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I+LYINSPGG +T+G+AIYDTMQ+IKP IST C+G AASMG++LL+ G KG RFALPN+
Sbjct: 64  DINLYINSPGGSITSGLAIYDTMQYIKPDISTICIGMAASMGAILLAGGTKGKRFALPNS 123

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           R+++HQP GG  G A DIE  A++I+ ++  LN+I  K+ G++ +++EK  DRD  MS++
Sbjct: 124 RVMIHQPFGGAEGVAKDIEIRAREILYLRDELNKILAKHTGQSIKKIEKDADRDFFMSST 183

Query: 194 EACDWGVVDKVLMSRIDIEEKS 215
           EA ++G++DKV+  +  ++ K 
Sbjct: 184 EAVEYGMIDKVIEQKAKVKTKE 205


>gi|157370220|ref|YP_001478209.1| ATP-dependent Clp protease proteolytic subunit [Serratia
           proteamaculans 568]
 gi|157321984|gb|ABV41081.1| Endopeptidase Clp [Serratia proteamaculans 568]
          Length = 197

 Score =  268 bits (685), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 122/193 (63%), Positives = 153/193 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQT++GERS+DIYSRLL++RIVF+ G++ D +A ++CAQLLFLEAENP+K I
Sbjct: 5   MLLVPMVVEQTSQGERSFDIYSRLLRDRIVFLNGEVNDQIAEVLCAQLLFLEAENPEKPI 64

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+T+G AIYDTM +I  P+ T CMG A SMGS LL AGE G R  LPNA +
Sbjct: 65  HLYINSPGGVITSGFAIYDTMNYINAPVHTLCMGTARSMGSFLLMAGEAGHRMVLPNASL 124

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
            +HQP GGF GQASDI  HA+++ + K  +  +Y K+CG++YEEVE+ LDRDH MSA EA
Sbjct: 125 HVHQPLGGFQGQASDILIHAEEMKRTKHSVITLYAKHCGRSYEEVERALDRDHFMSADEA 184

Query: 196 CDWGVVDKVLMSR 208
            +WG+VDKVL  R
Sbjct: 185 VEWGLVDKVLRGR 197


>gi|261415786|ref|YP_003249469.1| Endopeptidase Clp [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|261372242|gb|ACX74987.1| Endopeptidase Clp [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|302326653|gb|ADL25854.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 196

 Score =  268 bits (685), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 105/193 (54%), Positives = 147/193 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+E T RGER+YDIYSRLLKERI+F+   I D +A  + AQL+FLE ENP+K+I+L
Sbjct: 2   IIPTVIETTGRGERAYDIYSRLLKERIIFLGTPINDEVANNVMAQLIFLEYENPEKDITL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG+AIYDTMQ ++P I+T C+G  ASM ++LL+AG KG R+ALP++RI+L
Sbjct: 62  YINSPGGYVSAGLAIYDTMQHVRPNIATICIGSCASMAAVLLAAGTKGKRYALPHSRIML 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSG  +GQ++DI+  A++I++ K  L EI  K+ GK  +EV +  DRD  MS  EA  
Sbjct: 122 HQPSGAATGQSTDIQITAKEIIRTKDTLTEIVAKHTGKPVDEVREKTDRDFYMSPEEAKA 181

Query: 198 WGVVDKVLMSRID 210
           +GV+D++ + R +
Sbjct: 182 FGVIDEIFVPRKE 194


>gi|281339765|gb|EFB15349.1| hypothetical protein PANDA_017639 [Ailuropoda melanoleuca]
          Length = 272

 Score =  268 bits (685), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 116/205 (56%), Positives = 160/205 (78%), Gaps = 1/205 (0%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
              L L+P+VVEQT RGER+YDIYSRLL+ERIV V G I+D +A+L+ AQLLFL++E+ +
Sbjct: 49  ARALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNK 108

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K I +YINSPGG+VT+G+AIYDTMQ+I  PI T+C+GQAASMGSLLL+AG  GMR +LPN
Sbjct: 109 KPIHMYINSPGGMVTSGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPN 168

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           +RI++HQPSGG  GQA+DI   A++I+K+K++L  IY K+  ++   +E  ++RD  MS 
Sbjct: 169 SRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYGIYAKHTKQSLRVIESAMERDRYMSP 228

Query: 193 SEACDWGVVDKVLMSRI-DIEEKSK 216
            EA ++G++DKVL+    D E++ K
Sbjct: 229 MEAQEFGILDKVLVHPPQDGEDEPK 253


>gi|172058408|ref|YP_001814868.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Exiguobacterium sibiricum 255-15]
 gi|171990929|gb|ACB61851.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Exiguobacterium sibiricum 255-15]
          Length = 192

 Score =  268 bits (685), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 115/190 (60%), Positives = 149/190 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P V+EQTNRGER+YDIYSRLLK+RI+ +   I+D++A  + AQLLFL AE+P KEISL
Sbjct: 2   LIPTVIEQTNRGERAYDIYSRLLKDRIILLGSAIDDNVANSVVAQLLFLAAEDPDKEISL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TAGMAIYDTM FIKP +ST C+G AASMG+ LL AG KG RFALPNA I++
Sbjct: 62  YINSPGGSITAGMAIYDTMNFIKPQVSTICIGMAASMGAFLLQAGAKGKRFALPNAEIMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI+ HA+ I+K++  LN+I  +N G+  E +E+  +RD+ MSA  A D
Sbjct: 122 HQPLGGTQGQASDIKIHAERIIKMREHLNKIMAENTGQPLEVIERDTERDNFMSAQAAAD 181

Query: 198 WGVVDKVLMS 207
           +G++D+V+  
Sbjct: 182 YGLIDRVMER 191


>gi|229012047|ref|ZP_04169226.1| ATP-dependent Clp protease proteolytic subunit [Bacillus mycoides
           DSM 2048]
 gi|228749135|gb|EEL98981.1| ATP-dependent Clp protease proteolytic subunit [Bacillus mycoides
           DSM 2048]
          Length = 198

 Score =  268 bits (685), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 105/197 (53%), Positives = 141/197 (71%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E   + ++P V+EQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ 
Sbjct: 2   EGFIMSVIPYVIEQTKLGERSYDIYSRLLKDRIIMIGSEINDQVASSVVAQLLFLEAEDA 61

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+I LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL AG KG RFALP
Sbjct: 62  EKDIFLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLAGAKGKRFALP 121

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+ I++HQP GG  GQA++IE  A+ I+K+K  +N+I     G+  E+V    +RD+ M+
Sbjct: 122 NSEIMIHQPLGGVKGQATEIEITAKRILKLKHDINKIISNRTGQPVEKVAHDTERDYFMT 181

Query: 192 ASEACDWGVVDKVLMSR 208
           A EA ++G+VD V+  +
Sbjct: 182 AVEAKEYGIVDAVIEKK 198


>gi|170078144|ref|YP_001734782.1| Clp protease [Synechococcus sp. PCC 7002]
 gi|169885813|gb|ACA99526.1| Clp protease [Synechococcus sp. PCC 7002]
          Length = 197

 Score =  268 bits (685), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 106/189 (56%), Positives = 142/189 (75%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            +VPMVVEQ+  GER++DIYSRLL+ERIVF+   I+D +A  + AQLLFL+AE+  K+I 
Sbjct: 4   TVVPMVVEQSGMGERAFDIYSRLLRERIVFLGTAIDDTVADSVVAQLLFLDAEDADKDIQ 63

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG V AGMAIYDTMQ I+P + T C G AASMG+ LLS G KG R ALP++RI+
Sbjct: 64  LYINSPGGSVYAGMAIYDTMQQIRPNVVTICYGIAASMGAFLLSGGTKGKRMALPSSRIM 123

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA DIE  A++I+ IK +LN +   + G+ +++V +  +RD  MSA EAC
Sbjct: 124 IHQPLGGAQGQAVDIEIQAKEILYIKDKLNTLIADHTGQPFDKVAEDTERDFYMSAEEAC 183

Query: 197 DWGVVDKVL 205
            +G++D+V+
Sbjct: 184 QYGLIDQVI 192


>gi|15966977|ref|NP_387330.1| ATP-dependent Clp protease proteolytic subunit [Sinorhizobium
           meliloti 1021]
 gi|307302445|ref|ZP_07582202.1| Endopeptidase Clp [Sinorhizobium meliloti BL225C]
 gi|307316225|ref|ZP_07595669.1| Endopeptidase Clp [Sinorhizobium meliloti AK83]
 gi|18202305|sp|P58277|CLPP1_RHIME RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|15076250|emb|CAC47803.1| Probable ATP-dependent CLP protease proteolytic subunit
           [Sinorhizobium meliloti 1021]
 gi|306898065|gb|EFN28807.1| Endopeptidase Clp [Sinorhizobium meliloti AK83]
 gi|306903115|gb|EFN33705.1| Endopeptidase Clp [Sinorhizobium meliloti BL225C]
          Length = 205

 Score =  268 bits (685), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 118/193 (61%), Positives = 157/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQ++RGERS+DIYSRLL+ERI+F+ G++ D ++ L+CAQLLFLEAE+P+K I
Sbjct: 5   MQLVPMVVEQSSRGERSFDIYSRLLRERIIFLNGEVNDAVSALVCAQLLFLEAESPKKPI 64

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVT+G A+YDTM++I+ P+ T CMG A SMGS LL AGE G R ALPNA I
Sbjct: 65  QLYINSPGGVVTSGFAMYDTMRYIRAPVHTLCMGTARSMGSFLLMAGEAGERTALPNASI 124

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQPSGGF GQASD+  HA++I + K R+  +Y ++CG+TYEE E+ +DRD  M+A EA
Sbjct: 125 LVHQPSGGFQGQASDMLIHAEEIRRTKHRMTRLYAEHCGRTYEEFERAMDRDRFMTAEEA 184

Query: 196 CDWGVVDKVLMSR 208
            +WG++D+++  R
Sbjct: 185 LEWGLIDRIITER 197


>gi|229196961|ref|ZP_04323701.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           m1293]
 gi|228586518|gb|EEK44596.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           m1293]
          Length = 198

 Score =  267 bits (684), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 104/193 (53%), Positives = 138/193 (71%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P VVEQT  GERSYDIYSRLLK+RIV +  +I D +A+ + AQLLFLEAE+ +K+I
Sbjct: 6   MNAIPYVVEQTKLGERSYDIYSRLLKDRIVIIGSEINDQVASSVVAQLLFLEAEDAEKDI 65

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I
Sbjct: 66  FLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEI 125

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+A EA
Sbjct: 126 MIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMTAEEA 185

Query: 196 CDWGVVDKVLMSR 208
             +G+VD V+  +
Sbjct: 186 KAYGIVDDVVTKK 198


>gi|51473702|ref|YP_067459.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia typhi
           str. Wilmington]
 gi|60389549|sp|Q68WL5|CLPP_RICTY RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|51460014|gb|AAU03977.1| Caseinolytic protease [Rickettsia typhi str. Wilmington]
          Length = 201

 Score =  267 bits (684), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 122/193 (63%), Positives = 162/193 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P+V+EQT+RGER+YDIYSRLLKERI+FV   +EDHMA LI AQLLFLEAENP+K+I
Sbjct: 1   MSYIPVVIEQTSRGERAYDIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAENPKKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG+AIYDTMQFIKP ++T C+GQA SMGSLLL  GE GMR++LP++RI
Sbjct: 61  YMYINSPGGVVTAGLAIYDTMQFIKPKVATLCIGQACSMGSLLLCGGEHGMRYSLPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG+ GQA+DIE HA++ +KIK+ LNE+Y K+  +  + +EK+++RD+ MS  EA
Sbjct: 121 MIHQPSGGYKGQATDIEIHARETLKIKKLLNELYSKHTEQALKHIEKSMERDNFMSPGEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD ++ SR
Sbjct: 181 KKFGLVDNIISSR 193


>gi|228953123|ref|ZP_04115182.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|229190887|ref|ZP_04317878.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           ATCC 10876]
 gi|228592555|gb|EEK50383.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           ATCC 10876]
 gi|228806538|gb|EEM53098.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
          Length = 198

 Score =  267 bits (684), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 103/193 (53%), Positives = 138/193 (71%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ +K+I
Sbjct: 6   MNAIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDI 65

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I
Sbjct: 66  FLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEI 125

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+A EA
Sbjct: 126 MIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMTAEEA 185

Query: 196 CDWGVVDKVLMSR 208
             +G+VD V+  +
Sbjct: 186 KAYGIVDDVVTKK 198


>gi|228921458|ref|ZP_04084781.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228838231|gb|EEM83549.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 198

 Score =  267 bits (684), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 104/197 (52%), Positives = 139/197 (70%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E   +  +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ 
Sbjct: 2   EGYKMNAIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDA 61

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+I LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALP
Sbjct: 62  EKDIFLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALP 121

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+ I++HQP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+
Sbjct: 122 NSEIMIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMT 181

Query: 192 ASEACDWGVVDKVLMSR 208
           A EA  +G+VD V+  +
Sbjct: 182 AEEAKAYGIVDDVVTKK 198


>gi|224094113|ref|XP_002310077.1| predicted protein [Populus trichocarpa]
 gi|222852980|gb|EEE90527.1| predicted protein [Populus trichocarpa]
          Length = 244

 Score =  267 bits (684), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 111/208 (53%), Positives = 156/208 (75%), Gaps = 1/208 (0%)

Query: 2   SFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICA 61
           SF    K  +   +  L+PMV+E ++RGER+YDI+SRLLKERIV + G I+D  + ++ A
Sbjct: 20  SFLLTPKISTTRAY-SLIPMVIEHSSRGERAYDIFSRLLKERIVCINGPIDDDTSHVVVA 78

Query: 62  QLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSA 121
           QLLFLE+ENP K I +Y+NSPGG VTAG+AIYDTMQ+I+ P++T C+GQAASM SLLL+A
Sbjct: 79  QLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTMQYIRSPVTTICLGQAASMASLLLAA 138

Query: 122 GEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVE 181
           G KG R ALPNA I++HQPSGG+SGQA D+  H + IV++   LN++Y K+ G+  + ++
Sbjct: 139 GAKGERKALPNATIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNQLYCKHTGQPLDVIQ 198

Query: 182 KTLDRDHIMSASEACDWGVVDKVLMSRI 209
           K +DRD+ M+  EA ++G++D V+  R 
Sbjct: 199 KNMDRDYFMTPEEAKEFGIIDDVIDQRP 226


>gi|241203529|ref|YP_002974625.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240857419|gb|ACS55086.1| Endopeptidase Clp [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 203

 Score =  267 bits (684), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 120/196 (61%), Positives = 162/196 (82%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMV+EQ++RGERS+DIYSRLL+ERI+F+ G++ D ++ L+CAQLLFLEAENP+K I
Sbjct: 5   MQLVPMVIEQSSRGERSFDIYSRLLRERIIFLNGEVNDTVSALVCAQLLFLEAENPKKPI 64

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGGVVT+G+A+YDTM+FI+ P+ T CMG A SMGS LL AGE G R ALPNA I
Sbjct: 65  NLYINSPGGVVTSGLAMYDTMRFIRAPVHTLCMGTARSMGSFLLMAGEAGGRAALPNASI 124

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQPSGGF GQASD+  HA++I+K K+R+  +Y ++CG++YE+ E+ +DRD  M+A EA
Sbjct: 125 LIHQPSGGFQGQASDMMIHAEEILKTKQRMTRLYAEHCGRSYEDFERGMDRDRFMTAEEA 184

Query: 196 CDWGVVDKVLMSRIDI 211
            +WG++D++L  R D 
Sbjct: 185 LEWGLIDRILTVREDT 200


>gi|299529913|ref|ZP_07043341.1| ATP-dependent Clp protease proteolytic subunit [Comamonas
           testosteroni S44]
 gi|298722085|gb|EFI63014.1| ATP-dependent Clp protease proteolytic subunit [Comamonas
           testosteroni S44]
          Length = 201

 Score =  267 bits (684), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 117/194 (60%), Positives = 155/194 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQ+ RGERS+DIYSRLL++R++F+ G++ D ++ L+CAQLLFLEAENP K I
Sbjct: 5   MMLVPMVVEQSARGERSFDIYSRLLRDRVIFLNGEVNDAVSALVCAQLLFLEAENPDKPI 64

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+T+G+A+YDTMQFIK P+ T CMG A SMGS LL AGE G R A+PNA +
Sbjct: 65  HLYINSPGGVITSGLAMYDTMQFIKSPVHTLCMGTARSMGSFLLMAGEPGHRMAMPNASL 124

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
            +HQP GG  GQASDI  HA+++++ K R+  +Y ++CG++Y+EVE+ LDRD  M+A EA
Sbjct: 125 HVHQPLGGVRGQASDIRIHAEEMLRTKDRVTRLYAQHCGRSYQEVERDLDRDRFMTAKEA 184

Query: 196 CDWGVVDKVLMSRI 209
            +WG++DKVL  R 
Sbjct: 185 REWGLIDKVLDRRT 198


>gi|259502747|ref|ZP_05745649.1| ATP-dependent Clp protease [Lactobacillus antri DSM 16041]
 gi|312870316|ref|ZP_07730444.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus oris PB013-T2-3]
 gi|259169392|gb|EEW53887.1| ATP-dependent Clp protease [Lactobacillus antri DSM 16041]
 gi|311094200|gb|EFQ52516.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus oris PB013-T2-3]
          Length = 197

 Score =  267 bits (684), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 105/197 (53%), Positives = 151/197 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQ++RGER+YDIYSRLLK+RI+ ++G IED MA  I AQLLFL+A++  K+I
Sbjct: 1   MNLVPTVIEQSSRGERAYDIYSRLLKDRIIMLSGPIEDEMANSIVAQLLFLDAQDSTKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVT+GMAIYDTM FIK  + T  +G AASM S+L+S+G KG RF LP++++
Sbjct: 61  YLYINSPGGVVTSGMAIYDTMNFIKSDVQTIVIGMAASMASVLVSSGTKGKRFGLPHSQV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQPSGG  GQ ++IE  A +I+K ++ +NEI  KN G+  E++ +  +RDH ++A EA
Sbjct: 121 LIHQPSGGAQGQQTEIEIAATEILKTRKMINEILAKNSGQPIEKINRDTERDHYLTAQEA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
            D+G++D ++ +   ++
Sbjct: 181 VDYGLLDGIMENNSSLK 197


>gi|152975675|ref|YP_001375192.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus subsp. cytotoxis NVH 391-98]
 gi|152024427|gb|ABS22197.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cytotoxicus NVH 391-98]
          Length = 194

 Score =  267 bits (684), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 105/194 (54%), Positives = 139/194 (71%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
            +  +P VVEQT  GERSYDIYSRLLK+RIV +  +I D +A+ + AQLLFLEAE+ +K+
Sbjct: 1   MMNTIPYVVEQTKLGERSYDIYSRLLKDRIVMIGSEINDQVASSVVAQLLFLEAEDAEKD 60

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ 
Sbjct: 61  IFLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGLAASFGALLLLSGTKGKRFALPNSE 120

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQP GG  GQA++IE  A+ I+K+K+ +N I     G+  E+V +  +RD+ M+A E
Sbjct: 121 IMIHQPLGGAKGQATEIEITAKRILKLKQDINNIISDRTGQPIEKVARDTERDYFMTAEE 180

Query: 195 ACDWGVVDKVLMSR 208
           A  +G+VD V+  +
Sbjct: 181 AKTYGIVDAVITKK 194


>gi|229070268|ref|ZP_04203518.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           F65185]
 gi|228712832|gb|EEL64757.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           F65185]
          Length = 198

 Score =  267 bits (684), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 103/192 (53%), Positives = 137/192 (71%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ +K+I
Sbjct: 1   MNAIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I
Sbjct: 61  FLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+A EA
Sbjct: 121 MIHQPLGGAQGQATEIEITAKRILKLKYDINKMIAEKTGQPIERVAHDTERDYFMTAEEA 180

Query: 196 CDWGVVDKVLMS 207
             +G+VD V+  
Sbjct: 181 KAYGIVDNVVTK 192


>gi|198461900|ref|XP_001352265.2| GA18618 [Drosophila pseudoobscura pseudoobscura]
 gi|198142480|gb|EAL29303.2| GA18618 [Drosophila pseudoobscura pseudoobscura]
          Length = 253

 Score =  267 bits (684), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 121/211 (57%), Positives = 160/211 (75%)

Query: 5   GCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLL 64
            C    +    + L+PMVVEQT RGER+YDI+SRLLKERI+ + G I D +++ + AQLL
Sbjct: 16  KCVTGTTSSRSINLIPMVVEQTGRGERAYDIFSRLLKERIICLMGNITDDISSTVVAQLL 75

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           FL++EN  K I LYINSPGGVVTAG+AIYDTMQ++KPPI+T+C+GQA SMGSLLL+AG  
Sbjct: 76  FLQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPIATWCVGQACSMGSLLLAAGAP 135

Query: 125 GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
           GMR++LPNARI++HQPSGG  GQA+DI  HA++I+KIKR+L  IYVK+   +YEE+ + +
Sbjct: 136 GMRYSLPNARIMIHQPSGGAQGQATDILIHAEEIIKIKRQLTSIYVKHAKNSYEEMCQRM 195

Query: 185 DRDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
           +RDH M+  EA   G++D VL    +    S
Sbjct: 196 ERDHFMTPDEAKVLGIIDHVLEHPPETVSDS 226


>gi|301784789|ref|XP_002927807.1| PREDICTED: putative ATP-dependent Clp protease proteolytic subunit,
           mitochondrial-like [Ailuropoda melanoleuca]
          Length = 273

 Score =  267 bits (684), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 116/205 (56%), Positives = 160/205 (78%), Gaps = 1/205 (0%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
              L L+P+VVEQT RGER+YDIYSRLL+ERIV V G I+D +A+L+ AQLLFL++E+ +
Sbjct: 49  ARALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNK 108

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K I +YINSPGG+VT+G+AIYDTMQ+I  PI T+C+GQAASMGSLLL+AG  GMR +LPN
Sbjct: 109 KPIHMYINSPGGMVTSGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPN 168

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           +RI++HQPSGG  GQA+DI   A++I+K+K++L  IY K+  ++   +E  ++RD  MS 
Sbjct: 169 SRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYGIYAKHTKQSLRVIESAMERDRYMSP 228

Query: 193 SEACDWGVVDKVLMSRI-DIEEKSK 216
            EA ++G++DKVL+    D E++ K
Sbjct: 229 MEAQEFGILDKVLVHPPQDGEDEPK 253


>gi|229091793|ref|ZP_04222992.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock3-42]
 gi|228691575|gb|EEL45329.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock3-42]
          Length = 193

 Score =  267 bits (683), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 103/193 (53%), Positives = 138/193 (71%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P VVEQT  GERSYDIYSRLLK+RIV +  +I D +A+ + AQLLFLEAE+ +K+I
Sbjct: 1   MNAIPYVVEQTKLGERSYDIYSRLLKDRIVIIGSEINDQVASSVVAQLLFLEAEDAEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG  TAG AI DT+  IKP + T CMG AAS G+LLL +G KG RFALPN+ I
Sbjct: 61  FLYINSPGGSTTAGFAILDTINLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+A EA
Sbjct: 121 MIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMTAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD V+  +
Sbjct: 181 KAYGIVDDVVTKK 193


>gi|301091655|ref|XP_002896007.1| ATP-dependent Clp protease proteolytic subunit, putative
           [Phytophthora infestans T30-4]
 gi|262095668|gb|EEY53720.1| ATP-dependent Clp protease proteolytic subunit, putative
           [Phytophthora infestans T30-4]
          Length = 221

 Score =  267 bits (683), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 116/210 (55%), Positives = 159/210 (75%)

Query: 7   AKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
           A++    +   LVPMV+EQ+ RGER +DIYSRLLKERIVFV G + D MA+L+ AQLLFL
Sbjct: 11  ARRGFHSIMNSLVPMVLEQSPRGERVFDIYSRLLKERIVFVHGPVNDDMASLVTAQLLFL 70

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E+ENP+K++ +YINSPGG+V++G+AIYDTMQ+I+P ++T CMGQAASMGSLLL+ G  G 
Sbjct: 71  ESENPEKDVHMYINSPGGIVSSGLAIYDTMQYIQPKVNTLCMGQAASMGSLLLAGGASGC 130

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           R ALPNARI++HQPSGG  G ASDI   A++I+K++ RLN +Y  + GK  + +E+ +DR
Sbjct: 131 RSALPNARIMIHQPSGGAQGMASDIAIQAEEIIKLRTRLNGLYASHTGKPLKVIEQAMDR 190

Query: 187 DHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           D  M   EA ++G+VD ++ +R   +   K
Sbjct: 191 DLFMDPREAQEFGIVDSIIANRKTPQSPGK 220


>gi|311248480|ref|XP_003123161.1| PREDICTED: putative ATP-dependent Clp protease proteolytic subunit,
           mitochondrial-like [Sus scrofa]
          Length = 259

 Score =  267 bits (683), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 114/192 (59%), Positives = 156/192 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           L L+P+VVEQT RGER+YDIYSRLL+ERIV V G I+D +A+L+ AQLLFL++E+ +K I
Sbjct: 52  LPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPI 111

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVT+G+AIYDTMQ+I  PI T+C+GQAASMGSLLL+AG  GMR +LPN+RI
Sbjct: 112 HMYINSPGGVVTSGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRI 171

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+DI   A++I+K+K++L  IY K+  ++ + +E  ++RD  MS  EA
Sbjct: 172 MIHQPSGGARGQATDIAIQAEEIMKLKKQLYSIYAKHTKQSLQVIESAMERDRYMSPMEA 231

Query: 196 CDWGVVDKVLMS 207
            ++G++DKVL+ 
Sbjct: 232 QEFGILDKVLVH 243


>gi|296116539|ref|ZP_06835149.1| ATP-dependent Clp protease proteolytic subunit [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295976751|gb|EFG83519.1| ATP-dependent Clp protease proteolytic subunit [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 211

 Score =  267 bits (683), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 125/203 (61%), Positives = 167/203 (82%), Gaps = 1/203 (0%)

Query: 6   CAKKDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLL 64
              ++  ++F   LVPMVVEQT+RGER++DIYSRLL+ERI+F+TG + D ++ ++ AQLL
Sbjct: 1   MRDRNPVEIFNNALVPMVVEQTSRGERAFDIYSRLLQERIIFLTGPVYDQVSAVVSAQLL 60

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           +LE+ NP KEIS YINSPGGVV+AG+AIYDTMQ+I+ P+ST C+GQAASMGSLLL+ GEK
Sbjct: 61  YLESVNPTKEISFYINSPGGVVSAGLAIYDTMQYIRSPVSTVCIGQAASMGSLLLAGGEK 120

Query: 125 GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
           G RFALPN+R+++HQPSGG  GQASDIE  A +I+ I++RLNEIY  + G+T EE+E+ L
Sbjct: 121 GRRFALPNSRVMVHQPSGGAQGQASDIEIQATEILTIRKRLNEIYENHTGRTLEEIERKL 180

Query: 185 DRDHIMSASEACDWGVVDKVLMS 207
           +RD  MSA EAC +G+VD+V+ +
Sbjct: 181 ERDSYMSAEEACAFGIVDEVVRN 203


>gi|229145364|ref|ZP_04273753.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           BDRD-ST24]
 gi|228638203|gb|EEK94644.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           BDRD-ST24]
          Length = 198

 Score =  267 bits (683), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 104/197 (52%), Positives = 140/197 (71%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E+  +  +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ 
Sbjct: 2   EEFKMNTIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDA 61

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+I LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALP
Sbjct: 62  EKDIYLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALP 121

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+ I++HQP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+
Sbjct: 122 NSEIMIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMT 181

Query: 192 ASEACDWGVVDKVLMSR 208
           A EA  +G+VD V+  +
Sbjct: 182 AEEAKVYGIVDDVVTKK 198


>gi|73987256|ref|XP_854538.1| PREDICTED: similar to Putative ATP-dependent Clp protease
           proteolytic subunit, mitochondrial precursor
           (Endopeptidase Clp) [Canis familiaris]
          Length = 273

 Score =  267 bits (683), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 113/195 (57%), Positives = 156/195 (80%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
              L L+P+VVEQT RGER+YDIYSRLL+ERIV V G I+D +A+L+ AQLLFL++E+ +
Sbjct: 49  ARALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNK 108

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K I +YINSPGG+VT+G+AIYDTMQ+I  PI T+C+GQAASMGSLLL+AG  GMR +LPN
Sbjct: 109 KPIHMYINSPGGMVTSGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPN 168

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           +RI++HQPSGG  GQA+DI   A++I+K+K++L  IY K+  ++ + +E  ++RD  MS 
Sbjct: 169 SRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYGIYAKHTKQSLQVIESAMERDRYMSP 228

Query: 193 SEACDWGVVDKVLMS 207
            EA ++G++DKVL+ 
Sbjct: 229 MEAQEFGILDKVLVH 243


>gi|315304656|ref|ZP_07874875.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           ivanovii FSL F6-596]
 gi|313626974|gb|EFR95888.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           ivanovii FSL F6-596]
          Length = 191

 Score =  267 bits (683), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 106/190 (55%), Positives = 146/190 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT+RGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL+A++P+K+I
Sbjct: 1   MNLIPTVIEQTSRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG ++AGMAIYDTM F+K  + T  MG AASMGS LL+AG  G RFALPNA I
Sbjct: 61  FLYINSPGGSISAGMAIYDTMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+KIK R+N I  +  G+ YE + +  DRD+ M+A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAARHILKIKERMNTIMAEKTGQPYEVIARDTDRDNFMTAQEA 180

Query: 196 CDWGVVDKVL 205
            D+G++D ++
Sbjct: 181 KDYGLIDDII 190


>gi|225025229|ref|ZP_03714421.1| hypothetical protein EIKCOROL_02126 [Eikenella corrodens ATCC
           23834]
 gi|224941987|gb|EEG23196.1| hypothetical protein EIKCOROL_02126 [Eikenella corrodens ATCC
           23834]
          Length = 206

 Score =  267 bits (683), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 122/197 (61%), Positives = 162/197 (82%), Gaps = 2/197 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ+ RGER++DIYSRLLKERI+F+ G + D  A L+ AQLLFLE+ENP K+I L
Sbjct: 10  LVPTVIEQSGRGERAFDIYSRLLKERIIFLVGPVNDQTANLVVAQLLFLESENPDKDIFL 69

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AGM+IYDTM FIKP +ST C+GQAASMG+ LLSAG +G RFALPN+R+++
Sbjct: 70  YINSPGGSVSAGMSIYDTMNFIKPDVSTLCLGQAASMGAFLLSAGAEGKRFALPNSRVMI 129

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASDIE HA++++K+K +LN++  ++CG+T +E+E+  DRD+ MSA EA
Sbjct: 130 HQPLISGGLGGQASDIEIHAKELLKLKVKLNQLLAEHCGRTLDELERDTDRDNFMSAEEA 189

Query: 196 CDWGVVDKVLMSRIDIE 212
             +G++D+VL SR DI+
Sbjct: 190 QAYGLIDQVLSSRSDIK 206


>gi|157413171|ref|YP_001484037.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus str. MIT 9215]
 gi|254526501|ref|ZP_05138553.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Prochlorococcus marinus str. MIT 9202]
 gi|157387746|gb|ABV50451.1| Clp protease subunit [Prochlorococcus marinus str. MIT 9215]
 gi|221537925|gb|EEE40378.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Prochlorococcus marinus str. MIT 9202]
          Length = 195

 Score =  267 bits (683), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 97/192 (50%), Positives = 136/192 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+E++   ER +DIYSRLL+ERI+F+  Q+    A  I AQLLFLEAE+P+K+I +
Sbjct: 1   MIPLVLEESGGSERVFDIYSRLLRERIIFLGEQVTSETANRIVAQLLFLEAEDPEKDIYM 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I+DTMQ +KP I T C+G AASMG+ LL+AG KG R +L ++RI++
Sbjct: 61  YINSPGGSVYDGLGIFDTMQHVKPDIHTVCVGLAASMGAFLLAAGTKGKRSSLRHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A +I+ +K RLN    +  GK +E +++  DRD  MS  EA +
Sbjct: 121 HQPLGGARGQASDIRIQADEILFLKERLNTELSERTGKDFETIKEDTDRDFYMSPKEAVE 180

Query: 198 WGVVDKVLMSRI 209
           +G++D VL  + 
Sbjct: 181 YGLIDLVLDKKP 192


>gi|319760381|ref|YP_004124319.1| ATP-dependent Clp protease, proteolytic subunit [Candidatus
           Blochmannia vafer str. BVAF]
 gi|318039095|gb|ADV33645.1| ATP-dependent Clp protease, proteolytic subunit [Candidatus
           Blochmannia vafer str. BVAF]
          Length = 215

 Score =  267 bits (683), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 116/207 (56%), Positives = 161/207 (77%)

Query: 3   FEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQ 62
           + G     + +  +G++P+V+EQT RGER+YDI+S LLKERI+F+T  IE+H A  I AQ
Sbjct: 8   YGGNTTLQNLNYNMGIIPIVIEQTARGERAYDIFSLLLKERIIFITDTIENHTANSIVAQ 67

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           ++FLE+ENP K+I LYINSPGG++TAGM+IYDT+QFIKP +ST+CMGQAASMG+ LL+AG
Sbjct: 68  MMFLESENPTKDIHLYINSPGGLITAGMSIYDTIQFIKPDVSTYCMGQAASMGAFLLAAG 127

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
            KG RF LPNAR+++HQP G F GQA+DI  H ++I+++K  +N++  K+ GK+ + V K
Sbjct: 128 AKGKRFCLPNARVMIHQPLGSFQGQATDIAIHTKEILQVKNNINKLIAKHTGKSIDIVIK 187

Query: 183 TLDRDHIMSASEACDWGVVDKVLMSRI 209
            ++RD  +SA EA D+G+VD VL  RI
Sbjct: 188 DMERDCFLSADEAMDYGLVDCVLSKRI 214


>gi|227529566|ref|ZP_03959615.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           vaginalis ATCC 49540]
 gi|227350525|gb|EEJ40816.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           vaginalis ATCC 49540]
          Length = 197

 Score =  267 bits (683), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 105/197 (53%), Positives = 151/197 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQ++RGER+YDIYSRLLK+RI+ ++G IED MA  I AQLLFL+A++  K+I
Sbjct: 1   MNLVPTVIEQSSRGERAYDIYSRLLKDRIIMLSGPIEDDMANSIVAQLLFLDAQDSTKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVT+GMAIYDTM FIK  + T  +G AASM S+L+S+G KG RF LP++++
Sbjct: 61  YLYINSPGGVVTSGMAIYDTMNFIKSDVQTIVIGMAASMASVLVSSGAKGKRFGLPHSQV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQPSGG  GQ ++IE  A +I+K ++ +NEI  KN G+  E++ +  +RDH ++A EA
Sbjct: 121 LIHQPSGGAQGQQTEIEIAATEILKTRKMINEILAKNSGQPIEKINRDTERDHYLTAQEA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
            D+G++D ++ +   ++
Sbjct: 181 VDYGLLDGIMENNSKLK 197


>gi|256848088|ref|ZP_05553532.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           coleohominis 101-4-CHN]
 gi|256715148|gb|EEU30125.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           coleohominis 101-4-CHN]
          Length = 197

 Score =  267 bits (683), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 104/197 (52%), Positives = 151/197 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQ++RGER+YDIYSRLLK+RI+ ++G IED MA  I AQLLFL+A++  K+I
Sbjct: 1   MNLVPTVIEQSSRGERAYDIYSRLLKDRIIMLSGPIEDDMANSIVAQLLFLDAQDSTKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVT+GMAIYDTM FIK  + T  +G AASM S+L+S+G KG RF LP++++
Sbjct: 61  YLYINSPGGVVTSGMAIYDTMNFIKADVQTIVIGMAASMASVLVSSGAKGKRFGLPHSQV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQPSGG  GQ ++IE  A +I+K ++ +NEI  +N G+  E++ +  +RDH ++A EA
Sbjct: 121 LIHQPSGGAQGQQTEIEIAATEILKTRKMINEILAENSGQPIEKINQDTERDHYLTAQEA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
            D+G++D ++ ++   +
Sbjct: 181 VDYGLLDGIMENKPKAD 197


>gi|238650581|ref|YP_002916433.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
           peacockii str. Rustic]
 gi|259585964|sp|C4K1D4|CLPP_RICPU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|238624679|gb|ACR47385.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
           peacockii str. Rustic]
          Length = 201

 Score =  267 bits (683), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 125/193 (64%), Positives = 162/193 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP+VVE T+RGER+YDIYSRLLKERI+FV   +EDHMA LI AQLLFLEAENP+K+I
Sbjct: 1   MSYVPIVVEPTSRGERAYDIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAENPKKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG+AIYDTMQ+IKP ++T C+GQA SMGSLLL  GEKGMR++LP++RI
Sbjct: 61  YMYINSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSLLLCGGEKGMRYSLPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG+ GQA+DIE HAQ+ +KIKR LNE+Y K+  +  + +EK+++RD+ MS  EA
Sbjct: 121 MIHQPSGGYKGQATDIEIHAQETLKIKRLLNELYSKHTEQELKHIEKSMERDNFMSPEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD ++ SR
Sbjct: 181 KKFGLVDNIMSSR 193


>gi|254421111|ref|ZP_05034835.1| Clp protease [Brevundimonas sp. BAL3]
 gi|196187288|gb|EDX82264.1| Clp protease [Brevundimonas sp. BAL3]
          Length = 215

 Score =  267 bits (683), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 138/205 (67%), Positives = 167/205 (81%), Gaps = 1/205 (0%)

Query: 9   KDSEDVF-LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           +D  ++  + LVPMVVEQ++RGERS+DI+SRLL+ERI+F+TG  ED MA+LICAQLLFLE
Sbjct: 2   RDPIELMNMNLVPMVVEQSSRGERSFDIFSRLLRERIIFLTGPFEDTMASLICAQLLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           +ENP+KEIS+YINSPGG V++ +AIYDTMQ+IK P+ST  MG AAS GSL+L+AG  G R
Sbjct: 62  SENPKKEISMYINSPGGQVSSALAIYDTMQYIKSPVSTVVMGMAASAGSLILTAGAAGQR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
            ALPNARI++HQPSGGF GQASDIE HA DI   K+RLNEIYV + G+TYEEVEKTLDRD
Sbjct: 122 IALPNARIMVHQPSGGFRGQASDIELHAADIRYTKKRLNEIYVHHTGRTYEEVEKTLDRD 181

Query: 188 HIMSASEACDWGVVDKVLMSRIDIE 212
           H MSA EA  WG+VD V   R   +
Sbjct: 182 HFMSAEEAKAWGIVDHVYDKREQAD 206


>gi|295698387|ref|YP_003603042.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Candidatus
           Riesia pediculicola USDA]
 gi|291157158|gb|ADD79603.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Candidatus
           Riesia pediculicola USDA]
          Length = 196

 Score =  267 bits (683), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 114/196 (58%), Positives = 159/196 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++P V+E+T  GERSYDIYSRLLKERI+F+TG IED+MA LI +QLLFLE+EN  KEI
Sbjct: 1   MSIIPTVIEKTVFGERSYDIYSRLLKERIIFLTGYIEDNMANLIISQLLFLESENQTKEI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG++T+G++IYDT+QFI P +ST C+GQA SMG+ LL++G KG R+ LPN+RI
Sbjct: 61  YLYINSPGGIITSGISIYDTIQFIMPKVSTICIGQACSMGAFLLASGAKGKRYCLPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP G F GQA+DIE H ++I+K+K ++NE+  K+ GK  E++EK  +RD+ +S+ EA
Sbjct: 121 MIHQPMGSFRGQATDIEIHTKEIIKLKSKMNELMAKHTGKQVEQIEKDTERDYFLSSEEA 180

Query: 196 CDWGVVDKVLMSRIDI 211
            D+G+VD+V ++R  I
Sbjct: 181 VDYGLVDRVYLNRRSI 196


>gi|146337660|ref|YP_001202708.1| ATP-dependent Clp protease proteolytic subunit [Bradyrhizobium sp.
           ORS278]
 gi|146190466|emb|CAL74465.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           [Bradyrhizobium sp. ORS278]
          Length = 205

 Score =  267 bits (683), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 122/193 (63%), Positives = 160/193 (82%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMV+EQ++RGERS+DIYSRLL+ERIVF+ G++ D ++ L+CAQLLFLEAENP++ I
Sbjct: 5   MQLVPMVIEQSSRGERSFDIYSRLLRERIVFLNGEVNDTVSALVCAQLLFLEAENPKRPI 64

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVT+G+A+YDTMQF+K P+ T CMG A SMGS LL AGE G R ALPNA +
Sbjct: 65  HLYINSPGGVVTSGLAMYDTMQFVKAPVHTLCMGTARSMGSFLLMAGEPGERTALPNASL 124

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
            +HQP GGF GQASDI  HA+++ + KRR+  +Y ++CG++YE+VE+TLDRDH M+A EA
Sbjct: 125 HVHQPLGGFQGQASDIMIHAREMEQTKRRMIRLYAEHCGRSYEDVERTLDRDHFMTADEA 184

Query: 196 CDWGVVDKVLMSR 208
            DWG++D+V+  R
Sbjct: 185 QDWGLIDRVVKQR 197


>gi|291295952|ref|YP_003507350.1| Endopeptidase Clp [Meiothermus ruber DSM 1279]
 gi|290470911|gb|ADD28330.1| Endopeptidase Clp [Meiothermus ruber DSM 1279]
          Length = 195

 Score =  267 bits (683), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 98/193 (50%), Positives = 142/193 (73%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP V+EQT RGER YDIYSRLLK+RI+F+   I+  +A  + AQ+LFL A+NP +EI +
Sbjct: 2   IVPYVIEQTARGERVYDIYSRLLKDRIIFLGTPIDAQVANTVVAQILFLAAQNPNQEIRM 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+AIYDTMQF+  P+ST C+G AASMG++LL+AGE G R+ALP++++++
Sbjct: 62  YINSPGGDVDAGLAIYDTMQFVTAPVSTICVGLAASMGAVLLAAGEPGKRYALPHSKVMI 121

Query: 138 HQPSGGF-SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP      GQA+DI   A+ I+K ++ LN I  ++  +  E+VE+  +RD+ ++A EA 
Sbjct: 122 HQPWARGLGGQATDIAIQAEQILKTRKVLNTILARHTNQPLEKVERDTERDYYLTAEEAA 181

Query: 197 DWGVVDKVLMSRI 209
            +G+VD+V+    
Sbjct: 182 AYGLVDQVVSRET 194


>gi|228934064|ref|ZP_04096905.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228825578|gb|EEM71370.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
          Length = 198

 Score =  267 bits (682), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 104/193 (53%), Positives = 138/193 (71%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P VVEQT  GERSYDIYSRLLK+RIV +  +I D +A+ + AQLLFLEAE+ +K+I
Sbjct: 6   MNAIPYVVEQTKLGERSYDIYSRLLKDRIVIIGSEINDQVASSVVAQLLFLEAEDAEKDI 65

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I
Sbjct: 66  FLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGTKGKRFALPNSEI 125

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+A EA
Sbjct: 126 MIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMTAEEA 185

Query: 196 CDWGVVDKVLMSR 208
             +G+VD V+  +
Sbjct: 186 KAYGIVDDVVAKK 198


>gi|304405398|ref|ZP_07387057.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
           curdlanolyticus YK9]
 gi|304345437|gb|EFM11272.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
           curdlanolyticus YK9]
          Length = 194

 Score =  267 bits (682), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 106/193 (54%), Positives = 139/193 (72%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
              +VP VVEQTNRGERSYDIYSRLLK+RIVF+   I+D +A +I AQLLFL AE+P K+
Sbjct: 1   MSSIVPYVVEQTNRGERSYDIYSRLLKDRIVFLGSAIDDQVANVITAQLLFLAAEDPDKD 60

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I  YINSPGG  +AG AI DTM +IKP + T C G AAS  ++LL +G KG R+ALPN+ 
Sbjct: 61  IHFYINSPGGSTSAGFAILDTMHYIKPDVQTICAGMAASFAAILLLSGTKGKRYALPNSE 120

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           +++HQP GG  GQASDI   A+ I+ I+ +LN I V+  G+  E VE+ +DRD  MSA E
Sbjct: 121 VMIHQPHGGAQGQASDIAITAKRIIGIREKLNRITVERTGQPLERVEQDMDRDTYMSAEE 180

Query: 195 ACDWGVVDKVLMS 207
           A  +G++D+++  
Sbjct: 181 ALQYGIIDQIIKK 193


>gi|297808311|ref|XP_002872039.1| hypothetical protein ARALYDRAFT_910322 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297317876|gb|EFH48298.1| hypothetical protein ARALYDRAFT_910322 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 237

 Score =  267 bits (682), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 110/193 (56%), Positives = 149/193 (77%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            L+PMV+E ++RGER+YDI+SRLLKERI+ + G I D  + ++ AQLL+LE+ENP K I 
Sbjct: 27  SLIPMVIEHSSRGERAYDIFSRLLKERIICINGPINDDTSHVVVAQLLYLESENPSKPIH 86

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+NSPGG VTAG+AIYDTMQ+I+ PIST C+GQAASM SLLL+AG KG R +LPNA ++
Sbjct: 87  MYLNSPGGHVTAGLAIYDTMQYIRSPISTICLGQAASMASLLLAAGAKGQRRSLPNATVM 146

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG+SGQA DI  H + IV++   LNE+YVK+ G+  + V   +DRDH M+  EA 
Sbjct: 147 IHQPSGGYSGQAKDITIHTKQIVRVWDALNELYVKHTGQPLDVVANNMDRDHFMTPEEAK 206

Query: 197 DWGVVDKVLMSRI 209
            +G++D+V+  R 
Sbjct: 207 AFGIIDEVIDERP 219


>gi|114800297|ref|YP_760784.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Hyphomonas
           neptunium ATCC 15444]
 gi|114740471|gb|ABI78596.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Hyphomonas
           neptunium ATCC 15444]
          Length = 207

 Score =  267 bits (682), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 133/199 (66%), Positives = 176/199 (88%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           L LVPMVVEQT+RGER++DI+SRLLKERI+FVTG I+D +A+LI AQLLFLE+ENP++EI
Sbjct: 9   LNLVPMVVEQTSRGERAFDIFSRLLKERIIFVTGGIDDGIASLITAQLLFLESENPKREI 68

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           ++YINSPGG V++G+AIYDTMQ+++ PIST C+GQAASMGSLLL+AGEKG+R ALPNAR+
Sbjct: 69  AMYINSPGGYVSSGLAIYDTMQYVRCPISTVCIGQAASMGSLLLAAGEKGLRIALPNARV 128

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +LHQPSGG+SG A+DIERHA++I+++KRRLN+IYV++ G+ Y+ VE+ LDRD  ++A EA
Sbjct: 129 MLHQPSGGYSGVATDIERHAEEIIELKRRLNDIYVRHTGQEYDVVERKLDRDTFLTAEEA 188

Query: 196 CDWGVVDKVLMSRIDIEEK 214
            ++G+VDKV   R   +EK
Sbjct: 189 MEFGIVDKVYERRTAEDEK 207


>gi|225019943|ref|ZP_03709135.1| hypothetical protein CLOSTMETH_03897 [Clostridium methylpentosum
           DSM 5476]
 gi|224947307|gb|EEG28516.1| hypothetical protein CLOSTMETH_03897 [Clostridium methylpentosum
           DSM 5476]
          Length = 188

 Score =  267 bits (682), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 109/188 (57%), Positives = 150/188 (79%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MVVEQT+RGERSYDIYSRLL +RI+ ++ ++ D  A+L+ AQLL+LEA++P+K+I LYIN
Sbjct: 1   MVVEQTSRGERSYDIYSRLLNDRIIMLSDEVNDATASLVVAQLLYLEAQDPEKDIQLYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGG +T+GMAIYDTM +IK  +ST C+G AASMG+ LLSAG KG R ALPN+ I++HQP
Sbjct: 61  SPGGSITSGMAIYDTMNYIKSDVSTICIGMAASMGAFLLSAGAKGKRLALPNSEIMIHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
           SGG  GQA+DI   A+ I+K+K++LN++     G+  E++E+  +RD+ MSA EAC++G+
Sbjct: 121 SGGAQGQATDINIQAERIIKMKKQLNQMLADATGQPLEKIERDTERDNFMSAQEACEYGL 180

Query: 201 VDKVLMSR 208
           VDKV+  R
Sbjct: 181 VDKVIEKR 188


>gi|116494470|ref|YP_806204.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus casei
           ATCC 334]
 gi|191637855|ref|YP_001987021.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus casei
           BL23]
 gi|227535562|ref|ZP_03965611.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|239631219|ref|ZP_04674250.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|301065981|ref|YP_003788004.1| protease subunit of ATP-dependent Clp protease [Lactobacillus casei
           str. Zhang]
 gi|122264104|sp|Q03AL0|CLPP_LACC3 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706456|sp|B3WCR2|CLPP_LACCB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|116104620|gb|ABJ69762.1| ATP-dependent Clp protease proteolytic subunit ClpP [Lactobacillus
           casei ATCC 334]
 gi|190712157|emb|CAQ66163.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           [Lactobacillus casei BL23]
 gi|227186809|gb|EEI66876.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|239525684|gb|EEQ64685.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|300438388|gb|ADK18154.1| Protease subunit of ATP-dependent Clp protease [Lactobacillus casei
           str. Zhang]
 gi|327381924|gb|AEA53400.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus casei
           LC2W]
 gi|327385084|gb|AEA56558.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus casei
           BD-II]
          Length = 196

 Score =  267 bits (682), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 106/191 (55%), Positives = 151/191 (79%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP VVEQT+RGER+YDIYSRLLK+RI+ ++G++ D MA  + AQLLFL+A++ +K+I L
Sbjct: 2   LVPTVVEQTSRGERAYDIYSRLLKDRIIMLSGEVNDQMANSVIAQLLFLDAQDSEKDIYL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+T+G+A+ DTM FIK  + T  +G AASM S+LL+ G KG RFALPN+ IL+
Sbjct: 62  YINSPGGVITSGLAMLDTMNFIKSDVQTIAIGMAASMASVLLAGGTKGKRFALPNSTILI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQ ++IE  A++I+K +R++N+I     G+T E+++K  +RDH MSA EA D
Sbjct: 122 HQPSGGAQGQQTEIEIAAEEILKTRRKMNQILADATGQTIEQIKKDTERDHYMSAQEAKD 181

Query: 198 WGVVDKVLMSR 208
           +G++D +L+++
Sbjct: 182 YGLIDDILVNK 192


>gi|184154836|ref|YP_001843176.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           fermentum IFO 3956]
 gi|227514403|ref|ZP_03944452.1| endopeptidase Clp [Lactobacillus fermentum ATCC 14931]
 gi|260663135|ref|ZP_05864027.1| Clp protease [Lactobacillus fermentum 28-3-CHN]
 gi|226706457|sp|B2GAL4|CLPP_LACF3 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|183226180|dbj|BAG26696.1| endopeptidase Clp proteolytic subunit [Lactobacillus fermentum IFO
           3956]
 gi|227087269|gb|EEI22581.1| endopeptidase Clp [Lactobacillus fermentum ATCC 14931]
 gi|260552327|gb|EEX25378.1| Clp protease [Lactobacillus fermentum 28-3-CHN]
          Length = 196

 Score =  267 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 107/192 (55%), Positives = 153/192 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQ++RGER+YDIYSRLLK+RI+ ++G IED+MA  I AQLLFL+A++  K+I
Sbjct: 1   MNLVPTVIEQSSRGERAYDIYSRLLKDRIIMLSGPIEDNMANSIVAQLLFLDAQDSTKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVT+GMAIYDTM FIK  + T  +G AASM S+L+S+G KG RF LP++ +
Sbjct: 61  YLYINSPGGVVTSGMAIYDTMNFIKSDVQTIVIGMAASMASVLVSSGTKGKRFGLPHSTV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQ ++I+  A++I+K ++ +NEI  KN G+++E+VE+  +RDH ++A EA
Sbjct: 121 MIHQPSGGAQGQQTEIQIAAEEILKTRKMINEILAKNSGQSFEQVEQDTERDHYLTAQEA 180

Query: 196 CDWGVVDKVLMS 207
            D+G++D V+ S
Sbjct: 181 VDYGLLDGVMDS 192


>gi|238484703|ref|XP_002373590.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Aspergillus
           flavus NRRL3357]
 gi|317140707|ref|XP_001818368.2| ATP-dependent Clp protease proteolytic subunit [Aspergillus oryzae
           RIB40]
 gi|220701640|gb|EED57978.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Aspergillus
           flavus NRRL3357]
          Length = 256

 Score =  267 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 108/214 (50%), Positives = 152/214 (71%), Gaps = 4/214 (1%)

Query: 5   GCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLL 64
               K S        P V E    G  +YDI+SRLLKERI+ + G++++ M+  I AQLL
Sbjct: 32  PSLSKGSPPRGWTPTPFVTETVGGGWHTYDIFSRLLKERIICLNGEVDETMSASIVAQLL 91

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           FLEA+NPQK I LYINSPGG VTAG+AIYDTM +I  P+ST C+GQAASMGSLLL  G  
Sbjct: 92  FLEADNPQKPIHLYINSPGGSVTAGLAIYDTMTYIASPVSTICVGQAASMGSLLLCGGHP 151

Query: 125 GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKN-CGK---TYEEV 180
           G R+ LP++ I++HQPSGG+ GQA+DI  HA++I++++ +LN+IY ++  GK   + +E+
Sbjct: 152 GKRYCLPHSSIMIHQPSGGYFGQATDIAIHAKEILRVREQLNKIYKRHLTGKKELSLDEI 211

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           EK ++RD+ M A EA + G+VD++L  R+  +E+
Sbjct: 212 EKLMERDYFMGAQEALEMGIVDEILDRRVRSKEE 245


>gi|218440073|ref|YP_002378402.1| ATP-dependent Clp protease proteolytic subunit ClpP [Cyanothece sp.
           PCC 7424]
 gi|218172801|gb|ACK71534.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
           sp. PCC 7424]
          Length = 229

 Score =  267 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 103/206 (50%), Positives = 155/206 (75%), Gaps = 4/206 (1%)

Query: 11  SEDVFLGL---VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           S  ++ GL   +P+V+EQ+  GER++DIYSRLL+ERIVF+   I+D++A  I AQLL+L+
Sbjct: 16  SPKIYSGLQNILPVVIEQSGMGERAFDIYSRLLRERIVFLGTAIDDNVADSIVAQLLYLD 75

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AE+P+K+I +YINSPGG V AG+AIYDTMQ I+P + T C G AASMG+ LLS G KG R
Sbjct: 76  AEDPEKDIQIYINSPGGSVYAGLAIYDTMQQIRPDVVTICFGLAASMGAFLLSGGAKGKR 135

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
            ALP+AR+++HQP GG  GQA +I+  A++I+ IK+RLN +  ++ G+ Y+ + +  +RD
Sbjct: 136 MALPSARMMIHQPIGGAQGQAVEIDIQAKEILYIKQRLNTLLAEHTGQPYDRIAEDTERD 195

Query: 188 HIMSASEACDWGVVDKVLMSRIDIEE 213
             MSA +A ++G++D+V+ +R ++ +
Sbjct: 196 FYMSAYDAKNYGLIDQVI-ARSELPD 220


>gi|193214418|ref|YP_001995617.1| endopeptidase Clp [Chloroherpeton thalassium ATCC 35110]
 gi|193087895|gb|ACF13170.1| Endopeptidase Clp [Chloroherpeton thalassium ATCC 35110]
          Length = 226

 Score =  267 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 99/212 (46%), Positives = 154/212 (72%)

Query: 4   EGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQL 63
           E  + +    +   LVPMV+E + RGER++DI+SRLL+ERI+F+   I+DH A+LI AQL
Sbjct: 15  ELYSSRTESSINNMLVPMVIETSGRGERAFDIFSRLLRERIIFLGTPIDDHSASLIMAQL 74

Query: 64  LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           ++LE+E+P+++I +YINSPGG V+AG+ +YDTMQ+I+P +ST C+G AASMG+ LL++G 
Sbjct: 75  IYLESEDPERDIFMYINSPGGSVSAGLGLYDTMQYIRPDVSTVCVGMAASMGAFLLASGT 134

Query: 124 KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
            G R +LP++RI++HQPSGG  GQ +DI   A++I KI+R L E++ ++  +   +V + 
Sbjct: 135 AGKRASLPHSRIMIHQPSGGAQGQETDIVIQAREIEKIRRLLEELFAQHTKQDVVKVRED 194

Query: 184 LDRDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
            +RD  M+A EA ++G++D++   R   EE  
Sbjct: 195 SERDRWMNAQEAKEYGIIDEIFDRRKAPEEAK 226


>gi|189500958|ref|YP_001960428.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Chlorobium
           phaeobacteroides BS1]
 gi|189496399|gb|ACE04947.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Chlorobium
           phaeobacteroides BS1]
          Length = 228

 Score =  267 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 98/204 (48%), Positives = 152/204 (74%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           + +   LVPMV+E + RGER++DI+SRLL+ERI+F+   I+DH+A+L+ AQLLFLE+E+P
Sbjct: 22  QGITNSLVPMVIETSGRGERAFDIFSRLLRERIIFLGTPIDDHVASLLMAQLLFLESEDP 81

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           ++++ LYINSPGG V+AG+ +YDT+Q+I+  +ST C+G AASMG+ LL+ G  G R +LP
Sbjct: 82  ERDVFLYINSPGGSVSAGLGVYDTIQYIRSEVSTVCVGMAASMGAFLLACGANGKRASLP 141

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           ++RI++HQPSGG  GQ +DI   A++I KI++ L EI   +CG+  E++ +  +RD  M+
Sbjct: 142 HSRIMIHQPSGGVQGQETDILIQAREIEKIRKLLEEIMASHCGQDVEKIREDSERDRWMN 201

Query: 192 ASEACDWGVVDKVLMSRIDIEEKS 215
           A EA  +G++D++   R   E++ 
Sbjct: 202 AEEAKAYGIIDQIFSKRPASEKEK 225


>gi|229030470|ref|ZP_04186509.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           AH1271]
 gi|228730841|gb|EEL81782.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           AH1271]
          Length = 198

 Score =  267 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 103/197 (52%), Positives = 141/197 (71%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E + +  +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ 
Sbjct: 2   EGLKMNAIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDA 61

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+I LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALP
Sbjct: 62  EKDIFLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALP 121

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+ I++HQP GG  GQA++IE  A+ I+K+K  +N++  +  G++ E +    +RD+ M+
Sbjct: 122 NSEIMIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQSIERIAHDTERDYFMT 181

Query: 192 ASEACDWGVVDKVLMSR 208
           A EA  +G+VD V+  +
Sbjct: 182 AEEAKAYGIVDDVVTKK 198


>gi|103488219|ref|YP_617780.1| ATP-dependent Clp protease proteolytic subunit [Sphingopyxis
           alaskensis RB2256]
 gi|116243167|sp|Q1GPH5|CLPP_SPHAL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|98978296|gb|ABF54447.1| ATP-dependent Clp protease proteolytic subunit ClpP [Sphingopyxis
           alaskensis RB2256]
          Length = 216

 Score =  267 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 125/200 (62%), Positives = 166/200 (83%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
           D    LVP+VVEQT+RGERS+DI+SRLL+ERIVFVTG++ED+MA+LI AQLLFLE+ENP+
Sbjct: 3   DPLAALVPVVVEQTSRGERSFDIFSRLLRERIVFVTGEVEDNMASLIVAQLLFLESENPK 62

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K+I +YINSPGGVVTAGMAI+DTMQ+I+P + T C+GQAASMGS LL+AGE GMR AL N
Sbjct: 63  KDIYMYINSPGGVVTAGMAIHDTMQYIRPRVGTVCIGQAASMGSFLLAAGEPGMRVALTN 122

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           AR+++HQPSGG  G ASDIE  A++I++I++R+N++YVK  GK+ +++EK +DRD  + A
Sbjct: 123 ARVMVHQPSGGARGMASDIEIQAKEILRIRKRMNDLYVKYTGKSLKDIEKAMDRDTFLEA 182

Query: 193 SEACDWGVVDKVLMSRIDIE 212
            EA ++G+VD V   R  + 
Sbjct: 183 DEAKEFGIVDHVYDRRPALP 202


>gi|126732556|ref|ZP_01748354.1| Protease subunit of ATP-dependent Clp protease [Sagittula stellata
           E-37]
 gi|126707002|gb|EBA06070.1| Protease subunit of ATP-dependent Clp protease [Sagittula stellata
           E-37]
          Length = 197

 Score =  266 bits (681), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 126/195 (64%), Positives = 167/195 (85%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MVVEQT+RGER+YDI+SRLLKERIVF+ G + D M++L+ AQLL LEAENP KEIS+YIN
Sbjct: 1   MVVEQTSRGERAYDIFSRLLKERIVFLNGPVHDGMSSLVVAQLLHLEAENPSKEISMYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGGVVT+G++IYDTMQ+IKP +ST  +GQAASMGSLLL+AG  GMRF+LPN+RI++HQP
Sbjct: 61  SPGGVVTSGLSIYDTMQYIKPKVSTLVVGQAASMGSLLLTAGAAGMRFSLPNSRIMVHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
           SGG+ GQA+DI  HA++ +K+KRRLNEIYV++ G+TYE VE  L+RD+ M A +A +WG+
Sbjct: 121 SGGYQGQATDIMIHAEETIKLKRRLNEIYVRHTGQTYEAVEAALERDNFMDAEKAKEWGL 180

Query: 201 VDKVLMSRIDIEEKS 215
           +D+++ SR+   E++
Sbjct: 181 IDEIVTSRVPEGEET 195


>gi|302337810|ref|YP_003803016.1| ATP-dependent Clp protease proteolytic subunit ClpP [Spirochaeta
           smaragdinae DSM 11293]
 gi|301634995|gb|ADK80422.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Spirochaeta
           smaragdinae DSM 11293]
          Length = 205

 Score =  266 bits (681), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 111/204 (54%), Positives = 153/204 (75%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           ++    LVP VVEQT  GERSYDI+SRLLK+RIVF+ G+I D  A L+ AQLLFLE+ +P
Sbjct: 2   KEQMNNLVPYVVEQTGVGERSYDIFSRLLKDRIVFLDGEINDATADLVVAQLLFLESLDP 61

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +++ISLYINSPGG VTAG+AIYDT+Q+IKP + T CMGQAASM +L+L+ G  G RFALP
Sbjct: 62  ERDISLYINSPGGSVTAGLAIYDTIQYIKPDVQTICMGQAASMAALMLTCGSTGKRFALP 121

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           ++RIL+HQP GG  GQA DI   A++IV++K+     + ++ GK  E + + L+RD+ +S
Sbjct: 122 SSRILIHQPWGGAQGQAVDIGIQAKEIVRLKQLTIRYFSQHTGKGEEVIARDLERDYFLS 181

Query: 192 ASEACDWGVVDKVLMSRIDIEEKS 215
           A EA  +G++DKVL+   + E++ 
Sbjct: 182 AEEAVAYGIIDKVLVREKNGEKQK 205


>gi|34581620|ref|ZP_00143100.1| ATP-dependent clp protease proteolytic subunit [Rickettsia sibirica
           246]
 gi|20137864|sp|Q92HM5|CLPP_RICCN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|28263005|gb|EAA26509.1| ATP-dependent clp protease proteolytic subunit [Rickettsia sibirica
           246]
          Length = 201

 Score =  266 bits (681), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 124/193 (64%), Positives = 162/193 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP+V+E T+RGER+YDIYSRLLKERI+FV   +EDHMA LI AQLLFLEAENP+K+I
Sbjct: 1   MSYVPIVIEPTSRGERAYDIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAENPKKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG+AIYDTMQ+IKP ++T C+GQA SMGSLLL  GEKGMR++LP++RI
Sbjct: 61  YMYINSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSLLLCGGEKGMRYSLPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG+ GQA+DIE HAQ+ +KIKR LNE+Y K+  +  + +EK+++RD+ MS  EA
Sbjct: 121 MIHQPSGGYKGQATDIEIHAQETLKIKRLLNELYSKHTEQELKHIEKSMERDNFMSPEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD ++ SR
Sbjct: 181 KKFGLVDNIMSSR 193


>gi|47569052|ref|ZP_00239742.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus G9241]
 gi|52142722|ref|YP_084107.1| ATP-dependent Clp protease, proteolytic subunit [Bacillus cereus
           E33L]
 gi|217960230|ref|YP_002338790.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus AH187]
 gi|228985882|ref|ZP_04146030.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|67460465|sp|Q63AG0|CLPP1_BACCZ RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|47554321|gb|EAL12682.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus G9241]
 gi|51976191|gb|AAU17741.1| ATP-dependent Clp protease, proteolytic subunit [Bacillus cereus
           E33L]
 gi|217063351|gb|ACJ77601.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus AH187]
 gi|228773811|gb|EEM22229.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 193

 Score =  266 bits (681), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 103/193 (53%), Positives = 138/193 (71%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ +K+I
Sbjct: 1   MNAIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I
Sbjct: 61  FLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+A EA
Sbjct: 121 MIHQPLGGAKGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMTAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD V+  +
Sbjct: 181 KAYGIVDDVVTKK 193


>gi|309320723|pdb|3P2L|A Chain A, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
           From Francisella Tularensis
 gi|309320724|pdb|3P2L|B Chain B, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
           From Francisella Tularensis
 gi|309320725|pdb|3P2L|C Chain C, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
           From Francisella Tularensis
 gi|309320726|pdb|3P2L|D Chain D, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
           From Francisella Tularensis
 gi|309320727|pdb|3P2L|E Chain E, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
           From Francisella Tularensis
 gi|309320728|pdb|3P2L|F Chain F, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
           From Francisella Tularensis
 gi|309320729|pdb|3P2L|G Chain G, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
           From Francisella Tularensis
          Length = 201

 Score =  266 bits (681), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 112/195 (57%), Positives = 147/195 (75%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVP V+E+T  GER++DIYSRLLKERIVF+ G++ DH A L+ AQLLFLE+E+P K+I 
Sbjct: 5   NLVPTVIEKTAGGERAFDIYSRLLKERIVFLNGEVNDHSANLVIAQLLFLESEDPDKDIY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            YINSPGG VTAG  +YDT QFIKP +ST C+G AAS GSLLL+ G KG R++LP+++I 
Sbjct: 65  FYINSPGGXVTAGXGVYDTXQFIKPDVSTICIGLAASXGSLLLAGGAKGKRYSLPSSQIX 124

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I++IK RLN++   + G+  E + K  DRD+   A EA 
Sbjct: 125 IHQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFXXADEAK 184

Query: 197 DWGVVDKVLMSRIDI 211
            +G++D V+ SR  I
Sbjct: 185 AYGLIDHVIESREAI 199


>gi|319652198|ref|ZP_08006317.1| ATP-dependent Clp protease [Bacillus sp. 2_A_57_CT2]
 gi|317396187|gb|EFV76906.1| ATP-dependent Clp protease [Bacillus sp. 2_A_57_CT2]
          Length = 193

 Score =  266 bits (681), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 97/192 (50%), Positives = 144/192 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P V+EQ+++GERSYDIYSRLLK+RI+ +  +I D +   + AQLLFL AE+P+K+I
Sbjct: 1   MTAIPYVIEQSSKGERSYDIYSRLLKDRIIMIGEEINDVVTNSVIAQLLFLAAESPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG  TAG AI+DT+Q+IKP + T C G AAS G++LL AG+KG R++LPN+ I
Sbjct: 61  SLYINSPGGSTTAGFAIFDTIQYIKPDVRTICTGMAASFGAMLLLAGKKGKRYSLPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K++  +N I  +  G+  E+V +  DRD+ M+A EA
Sbjct: 121 MIHQPLGGARGQATEIEISAKRIIKLREHINGIIAERTGQPIEKVARDTDRDYFMTAEEA 180

Query: 196 CDWGVVDKVLMS 207
            ++G++D+++  
Sbjct: 181 KEYGIIDEIIYK 192


>gi|241116836|ref|XP_002401631.1| ATP-dependent Clp protease, proteolytic subunit, putative [Ixodes
           scapularis]
 gi|215493175|gb|EEC02816.1| ATP-dependent Clp protease, proteolytic subunit, putative [Ixodes
           scapularis]
          Length = 205

 Score =  266 bits (681), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 124/205 (60%), Positives = 167/205 (81%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E + +  VP+V+EQT+RGER+YDIYSRLLKERI+FV   +EDHM  LI AQLLFLEAENP
Sbjct: 1   EKILMSYVPIVIEQTSRGERAYDIYSRLLKERIIFVCSTVEDHMTNLIVAQLLFLEAENP 60

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+I +YINSPGGV+TAG+AIYDTMQ+IKP ++T C+GQA SMGSLLL  GEKGMR++LP
Sbjct: 61  KKDIYMYINSPGGVITAGLAIYDTMQYIKPKVATLCIGQACSMGSLLLCGGEKGMRYSLP 120

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           ++RI++HQPSGG+ GQA+DIE HAQ+ +KIKR LNE+Y K+  +  + +EK+++RD+ MS
Sbjct: 121 HSRIMIHQPSGGYKGQATDIEIHAQETLKIKRLLNELYSKHTRQELKHIEKSMERDNFMS 180

Query: 192 ASEACDWGVVDKVLMSRIDIEEKSK 216
             EA  +G++D ++ SR  +   +K
Sbjct: 181 PEEAKKFGIIDNIISSRDAMTMSAK 205


>gi|209546440|ref|YP_002278330.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209539297|gb|ACI59230.1| Endopeptidase Clp [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 203

 Score =  266 bits (681), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 118/193 (61%), Positives = 161/193 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQ++RGERS+DIYSRLL+ERIVF+ G++ D ++ L+CAQLLFLEAENP+K I
Sbjct: 5   MQLVPMVVEQSSRGERSFDIYSRLLRERIVFLNGEVNDTVSALVCAQLLFLEAENPKKPI 64

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVT+G+A+YDTM++I+ P+ T CMG A SMGS LL AGE G R ALPNA I
Sbjct: 65  YLYINSPGGVVTSGLAMYDTMRYIRAPVHTLCMGTARSMGSFLLMAGEPGERAALPNASI 124

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQPSGGF GQA+D++ HA++I+K K+R+  +Y ++CG++YE+ E+ +DRD  M++ EA
Sbjct: 125 LIHQPSGGFQGQATDMQIHAEEILKTKQRMTRLYAEHCGRSYEDFERAMDRDRFMTSQEA 184

Query: 196 CDWGVVDKVLMSR 208
            +WG++DK++  R
Sbjct: 185 LEWGLIDKIMQLR 197


>gi|195146760|ref|XP_002014352.1| GL19149 [Drosophila persimilis]
 gi|194106305|gb|EDW28348.1| GL19149 [Drosophila persimilis]
          Length = 253

 Score =  266 bits (681), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 121/211 (57%), Positives = 160/211 (75%)

Query: 5   GCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLL 64
            C    +    + L+PMVVEQT RGER+YDI+SRLLKERI+ + G I D +++ + AQLL
Sbjct: 16  KCVTGTTSSRSINLIPMVVEQTGRGERAYDIFSRLLKERIICLMGNITDDISSTVVAQLL 75

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           FL++EN  K I LYINSPGGVVTAG+AIYDTMQ++KPPI+T+C+GQA SMGSLLL+AG  
Sbjct: 76  FLQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPIATWCVGQACSMGSLLLAAGAP 135

Query: 125 GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
           GMR++LPNARI++HQPSGG  GQA+DI  HA++I+KIKR+L  IYVK+   +YEE+ + +
Sbjct: 136 GMRYSLPNARIMIHQPSGGAQGQATDILIHAEEIIKIKRQLTSIYVKHAKNSYEEMCQRM 195

Query: 185 DRDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
           +RDH M+  EA   G++D VL    +    S
Sbjct: 196 ERDHFMTPDEAKILGIIDHVLEHPPETVSDS 226


>gi|194761774|ref|XP_001963100.1| GF15771 [Drosophila ananassae]
 gi|190616797|gb|EDV32321.1| GF15771 [Drosophila ananassae]
          Length = 252

 Score =  266 bits (681), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 121/211 (57%), Positives = 162/211 (76%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           ++   CA + S    + L+PMVVEQT RGER+YDI+SRLLKERI+ + G I D +++ + 
Sbjct: 12  INSAKCAGRTSLVRNINLIPMVVEQTGRGERAYDIFSRLLKERIICLMGNITDDISSTVV 71

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFL++EN  K I LYINSPGGVVTAG+AIYDTMQ++KPPI+T+C+GQA SMGSLLL+
Sbjct: 72  AQLLFLQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPIATWCVGQACSMGSLLLA 131

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG  GMR++LPNARI++HQPSGG  GQA+DI  HA++I+KIKR+L  IYVK+   +Y+E+
Sbjct: 132 AGAPGMRYSLPNARIMIHQPSGGAQGQATDILIHAEEIIKIKRQLTSIYVKHAKNSYDEM 191

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
              ++RDH M+  EA   G++D VL    + 
Sbjct: 192 CSRMERDHFMTPEEAKTLGIIDHVLEHPPET 222


>gi|229161662|ref|ZP_04289642.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           R309803]
 gi|228621907|gb|EEK78753.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           R309803]
          Length = 193

 Score =  266 bits (681), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 104/193 (53%), Positives = 140/193 (72%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ +K+I
Sbjct: 1   MNTIPYVVEQTKLGERSYDIYSRLLKDRIIMIGSEINDQVASSVVAQLLFLEAEDAEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I
Sbjct: 61  FLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K+K  +N++  +  G++ E V    +RD+ M+A EA
Sbjct: 121 MIHQPLGGAKGQATEIEITAKRILKLKHDINKMIAEKTGQSLERVAHDTERDYFMTAEEA 180

Query: 196 CDWGVVDKVLMSR 208
            D+G+VD V+  +
Sbjct: 181 KDYGIVDDVVAKK 193


>gi|229060463|ref|ZP_04197826.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           AH603]
 gi|228718846|gb|EEL70467.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           AH603]
          Length = 198

 Score =  266 bits (681), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 105/193 (54%), Positives = 139/193 (72%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ +K+I
Sbjct: 6   MNAIPYVVEQTKLGERSYDIYSRLLKDRIIMIGSEINDQVASSVVAQLLFLEAEDAEKDI 65

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL AG KG RFALPN+ I
Sbjct: 66  FLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLAGAKGKRFALPNSEI 125

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K+K  +N+I     G+  E+V    +RD+ M+A EA
Sbjct: 126 MIHQPLGGVKGQATEIEITAKRILKLKHDINKIISDRTGQPVEKVAHDTERDYFMTAVEA 185

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD V+  +
Sbjct: 186 KEYGIVDAVIEKK 198


>gi|226489631|emb|CAX74966.1| ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit
           homolog [Schistosoma japonicum]
          Length = 249

 Score =  266 bits (681), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 114/201 (56%), Positives = 161/201 (80%), Gaps = 2/201 (0%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+V+++T  GER+YDIYSRLLK+RI+ + G I D +A L+ AQLL+L++E+ +  I
Sbjct: 42  MSLVPIVLDKTTHGERAYDIYSRLLKDRIICLMGAISDEVAGLVVAQLLYLQSEDKKIPI 101

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG+AIYDTMQFIKPP++T+C+GQA+SMGSLLL+AG  G+RFALP++RI
Sbjct: 102 HIYINSPGGVVTAGLAIYDTMQFIKPPVATWCVGQASSMGSLLLAAGAPGLRFALPHSRI 161

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSG   GQASDI+ HA++I+K++  +N IY ++  ++ E +EK +DRD+ M+A EA
Sbjct: 162 MVHQPSGSAHGQASDIKIHAEEIIKMRNIINTIYERHTKQSQEVIEKWMDRDYFMTAEEA 221

Query: 196 CDWGVVDKVLMSRIDIEEKSK 216
             +G+VD VL  R    +KSK
Sbjct: 222 VSFGIVDMVL--REAPADKSK 240


>gi|225423749|ref|XP_002277069.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 241

 Score =  266 bits (680), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 108/193 (55%), Positives = 152/193 (78%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            L+PMV+E ++RGER+YDI+SRLLKERIV + G I D  A ++ AQLLFLE+ENP K I 
Sbjct: 29  ALIPMVIEHSSRGERAYDIFSRLLKERIVCINGPISDDTAHVVVAQLLFLESENPSKPIH 88

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+NSPGG V+AG+AIYDTMQ+I+ P++T C+GQAASMGSLLL+AG KG R ALPNA I+
Sbjct: 89  MYLNSPGGAVSAGLAIYDTMQYIRSPVNTICLGQAASMGSLLLAAGAKGERRALPNATIM 148

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG+SGQA D+  H + I+++   LN +Y K+ G++ + ++K +DRD+ M+  EA 
Sbjct: 149 IHQPSGGYSGQAKDMTIHTKQIIRVWDSLNALYAKHTGQSLDIIQKNMDRDYFMTPEEAK 208

Query: 197 DWGVVDKVLMSRI 209
           ++G++D+V+  R 
Sbjct: 209 EFGIIDEVIDQRP 221


>gi|22298615|ref|NP_681862.1| ATP-dependent Clp protease proteolytic subunit [Thermosynechococcus
           elongatus BP-1]
 gi|34222549|sp|Q8DJZ9|CLPP2_THEEB RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|22294795|dbj|BAC08624.1| ATP-dependent Clp protease proteolytic subunit 2
           [Thermosynechococcus elongatus BP-1]
          Length = 198

 Score =  266 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 99/194 (51%), Positives = 144/194 (74%), Gaps = 2/194 (1%)

Query: 19  VPMVVEQTNRGE--RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +       +  DIY+RL +ERI+F+  +++D +A  I A +L+L++E+P K+I 
Sbjct: 5   VPKVPYRLPGEPYTQWIDIYNRLYRERIIFLGKEVDDEIANQIVAVMLYLDSEDPGKDIM 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGMAIYDTMQ IK  + T C+G AASMGS LL+AG KG R ALP++RI+
Sbjct: 65  LYINSPGGSVTAGMAIYDTMQHIKSDVVTICVGLAASMGSFLLAAGTKGKRLALPHSRIM 124

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  GQA+DIE  A++I++++R+LNE+Y  + G+  E++E+ +DRD  MSA EA 
Sbjct: 125 IHQPSGGTRGQATDIEIEAREILRVRRQLNELYAYHTGQPLEKIERDMDRDFFMSAEEAK 184

Query: 197 DWGVVDKVLMSRID 210
           ++G++D+V+  R +
Sbjct: 185 NYGLIDRVIEERSN 198


>gi|261868693|ref|YP_003256615.1| ATP-dependent Clp protease proteolytic subunit [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|293391572|ref|ZP_06635906.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|261414025|gb|ACX83396.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|290952106|gb|EFE02225.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 188

 Score =  266 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 118/188 (62%), Positives = 153/188 (81%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MVV+QT+RGER+YDIYSRLLK+R++F++G++ED+MA LI AQLLFLE+E+P K+I+LYIN
Sbjct: 1   MVVDQTSRGERAYDIYSRLLKDRVIFLSGEVEDNMANLIVAQLLFLESEDPDKDINLYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGG VTAGMAIYDTMQFIKP + T C+GQA SMG+ LL+ G  G R ALP+AR+++HQP
Sbjct: 61  SPGGSVTAGMAIYDTMQFIKPDVRTLCIGQACSMGAFLLAGGAAGKRGALPHARVMIHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            GGF GQASDI+ HAQ+I+KIK  LNE    + G+  E +EK  DRD+ MSA EA ++G+
Sbjct: 121 LGGFRGQASDIQIHAQEILKIKSTLNERLAFHTGQPIETIEKDTDRDNFMSAQEAKNYGL 180

Query: 201 VDKVLMSR 208
           +D+V   R
Sbjct: 181 IDEVFSKR 188


>gi|94498801|ref|ZP_01305347.1| ATP-dependent Clp protease [Sphingomonas sp. SKA58]
 gi|94421730|gb|EAT06785.1| ATP-dependent Clp protease [Sphingomonas sp. SKA58]
          Length = 211

 Score =  266 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 125/205 (60%), Positives = 167/205 (81%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
            D    LVP+V+EQ+NRGERS+DI+SRLL+ERI+FVTGQ+EDHMA+LI AQLLFLE+ENP
Sbjct: 6   SDPMAALVPIVIEQSNRGERSFDIFSRLLRERIIFVTGQVEDHMASLIVAQLLFLESENP 65

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+I +YINSPGGVVT+GMAI+DTM++I+P + T C+GQAASMGS LL+AGE G R AL 
Sbjct: 66  KKDIWMYINSPGGVVTSGMAIHDTMKYIRPQVGTVCIGQAASMGSFLLAAGEPGKRIALS 125

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           NARI++HQPSGG  G ASDIE  A++I++I+RRLN++YV+  G+T E VE+ +DRD  + 
Sbjct: 126 NARIMVHQPSGGAQGMASDIEIQAKEILRIRRRLNDLYVQYTGQTLEAVERAMDRDTFLE 185

Query: 192 ASEACDWGVVDKVLMSRIDIEEKSK 216
           A EA  +G+VD+V   R  + + ++
Sbjct: 186 ADEAKAFGLVDEVFDRRPQMADPNE 210


>gi|229156366|ref|ZP_04284461.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           ATCC 4342]
 gi|228627089|gb|EEK83821.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           ATCC 4342]
          Length = 198

 Score =  266 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 104/197 (52%), Positives = 139/197 (70%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E   +  +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ 
Sbjct: 2   EGYKMNAIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDA 61

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+I LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALP
Sbjct: 62  EKDIFLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALP 121

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+ I++HQP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+
Sbjct: 122 NSEIMIHQPLGGAKGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMT 181

Query: 192 ASEACDWGVVDKVLMSR 208
           A EA  +G+VD V+  +
Sbjct: 182 AEEAKAYGIVDDVVTKK 198


>gi|303232754|ref|ZP_07319439.1| Clp protease [Atopobium vaginae PB189-T1-4]
 gi|302481240|gb|EFL44315.1| Clp protease [Atopobium vaginae PB189-T1-4]
          Length = 204

 Score =  266 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 99/204 (48%), Positives = 140/204 (68%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
               V   L+P V+EQT RGERSYDIYSRLL +RIVF+  ++    A L+ AQLL LE++
Sbjct: 1   MHTPVATPLIPYVIEQTPRGERSYDIYSRLLNDRIVFLGEEVTRDSANLVIAQLLHLESQ 60

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           +P K+ISLYI+SPGG V AG+ I DTM FIKP +ST C+G A SM S+LL+AG KG R  
Sbjct: 61  DPDKDISLYIDSPGGEVYAGLGILDTMNFIKPDVSTICVGMACSMASVLLAAGAKGKRMC 120

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPN+ +++HQPS G  GQ +DI+  A +   I+  LNE+     G+T E + +  +RD+ 
Sbjct: 121 LPNSMVMIHQPSSGAQGQQTDIQIVADETKWIREHLNELLASYTGQTKERINEDTERDNY 180

Query: 190 MSASEACDWGVVDKVLMSRIDIEE 213
           + A +A ++G+VDKV+ +R  +++
Sbjct: 181 LRAQDALEYGLVDKVITTRAALQK 204


>gi|124013820|sp|Q2RZ59|CLPP2_SALRD RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
          Length = 233

 Score =  266 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 109/194 (56%), Positives = 146/194 (75%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           +    GLVPMVVEQT RGER+YDI+SRLLKERIVF+   I D +A L  AQLL+L +E+ 
Sbjct: 15  DQPMSGLVPMVVEQTTRGERAYDIFSRLLKERIVFIGTPINDQIANLTVAQLLYLASESS 74

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K I+LYINSPGGV+ +G+ +YDTMQ+I  P+ST C+G AASMGS+LL+AGE   R  LP
Sbjct: 75  EKPINLYINSPGGVIYSGLGVYDTMQYIGAPVSTICVGLAASMGSVLLAAGEDDSRACLP 134

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+R+++HQP GG  GQASDIE  A++I+ +K RL EI   + G+  +++E   DR++ MS
Sbjct: 135 NSRVMIHQPMGGAEGQASDIEIQAEEIMWLKERLYEILALHTGQDIDQIEADADRNYWMS 194

Query: 192 ASEACDWGVVDKVL 205
           A EA ++G+VD VL
Sbjct: 195 AEEAEEYGLVDNVL 208


>gi|228959022|ref|ZP_04120723.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228800683|gb|EEM47599.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 198

 Score =  266 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 103/193 (53%), Positives = 138/193 (71%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ +K+I
Sbjct: 6   MNAIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDI 65

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I
Sbjct: 66  FLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEI 125

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+A EA
Sbjct: 126 MIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMTAEEA 185

Query: 196 CDWGVVDKVLMSR 208
             +G+VD V+  +
Sbjct: 186 KVYGIVDDVVTKK 198


>gi|302342888|ref|YP_003807417.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfarculus
           baarsii DSM 2075]
 gi|301639501|gb|ADK84823.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfarculus
           baarsii DSM 2075]
          Length = 198

 Score =  266 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 119/195 (61%), Positives = 155/195 (79%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
              L+P V+EQT+RGERSYDIYSRLLK+RI+ +   I+D++A ++ AQLLFLEAE+P K+
Sbjct: 1   MSSLIPFVIEQTSRGERSYDIYSRLLKDRIIILGQAIDDNVANVVTAQLLFLEAEDPNKD 60

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I LYINSPGGVVTAGMAIYDTMQFIK P+ST CMGQAASM +LLL+AGE G R++LP AR
Sbjct: 61  IHLYINSPGGVVTAGMAIYDTMQFIKAPVSTLCMGQAASMAALLLAAGEPGKRYSLPKAR 120

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           IL+HQPSGG  GQASDIE HA++I++++  LN I  ++ G++ E++    +RD+ MS  E
Sbjct: 121 ILIHQPSGGAQGQASDIEIHAREILRMREDLNNILAQHTGQSLEKIAADTERDYFMSGDE 180

Query: 195 ACDWGVVDKVLMSRI 209
           A  +GV+DKV+  R 
Sbjct: 181 AVAYGVIDKVISRRA 195


>gi|78779134|ref|YP_397246.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus str. MIT 9312]
 gi|115311341|sp|Q31BD5|CLPP1_PROM9 RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|78712633|gb|ABB49810.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Prochlorococcus marinus str. MIT 9312]
          Length = 195

 Score =  266 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 99/192 (51%), Positives = 136/192 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+E++   ER +DIYSRLL+ERI+F+  Q+    A  I AQLLFLEAE+P K+I +
Sbjct: 1   MIPLVLEESGGSERVFDIYSRLLRERIIFLGEQVTSETANRIVAQLLFLEAEDPDKDIYM 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I+DTMQ +KP I T C+G AASMG+ LL+AG KG R +L ++RI++
Sbjct: 61  YINSPGGSVYDGLGIFDTMQHVKPDIHTVCVGLAASMGAFLLAAGTKGKRSSLRHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A +I+ +K RLN    +  GK YE +++  DRD  MS SEA +
Sbjct: 121 HQPLGGARGQASDIRIQADEILFLKERLNTELSERTGKDYETIKEDTDRDFYMSPSEAVE 180

Query: 198 WGVVDKVLMSRI 209
           +G++D VL  + 
Sbjct: 181 YGLIDLVLDKKP 192


>gi|227510637|ref|ZP_03940686.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
 gi|227513652|ref|ZP_03943701.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           buchneri ATCC 11577]
 gi|227524797|ref|ZP_03954846.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           hilgardii ATCC 8290]
 gi|227083168|gb|EEI18480.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           buchneri ATCC 11577]
 gi|227088053|gb|EEI23365.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           hilgardii ATCC 8290]
 gi|227190289|gb|EEI70356.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
          Length = 214

 Score =  265 bits (679), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 106/206 (51%), Positives = 154/206 (74%)

Query: 7   AKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
            K D E   + LVP V+EQ+  GER+YDIYSRLLK+RI+ ++G IED MA  I AQLLFL
Sbjct: 9   HKIDKEAYSMNLVPTVIEQSANGERAYDIYSRLLKDRIIMLSGPIEDDMANAIIAQLLFL 68

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           +A++ +K+I LYINSPGGV+T+GMAI+DTM F+K  + T  MG AASM S+L S+G KG 
Sbjct: 69  DAQDSEKDIYLYINSPGGVITSGMAIFDTMNFVKADVQTIVMGMAASMASVLASSGAKGK 128

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           RFALP+A++L+HQPSGG  GQ ++IE  A++I+K ++ +NE+  KN G+  E++ K  +R
Sbjct: 129 RFALPHAQVLIHQPSGGAQGQQTEIEIAAEEILKARKMINELLAKNSGQPIEKINKDTER 188

Query: 187 DHIMSASEACDWGVVDKVLMSRIDIE 212
           D+ ++A EA D+G++D ++ +  + +
Sbjct: 189 DNYLTAQEAVDYGLLDGIMTNSSEKK 214


>gi|146282418|ref|YP_001172571.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           stutzeri A1501]
 gi|145570623|gb|ABP79729.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           stutzeri A1501]
          Length = 206

 Score =  265 bits (679), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 119/192 (61%), Positives = 156/192 (81%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+EQ+ RGER+YDIYSRLLKER++F+ GQ+ED+MA LI AQLLFLEAENP+K+I 
Sbjct: 11  GLVPMVIEQSARGERAYDIYSRLLKERVIFMVGQVEDYMANLIVAQLLFLEAENPEKDIH 70

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+LLL+ G  G R+ LP++R++
Sbjct: 71  LYINSPGGSVTAGMSIYDTMQFIKPNVSTICIGQACSMGALLLAGGAAGKRYCLPHSRMM 130

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+ I+ RLN++   + G+  + + +  DRD+ MS  EA 
Sbjct: 131 IHQPLGGFQGQASDIEIHAREILTIRERLNKVLAHHTGQPMDVIARDTDRDNFMSGEEAV 190

Query: 197 DWGVVDKVLMSR 208
            +G++D+VL  R
Sbjct: 191 KYGLIDQVLTQR 202


>gi|270261418|ref|ZP_06189691.1| ATP-dependent Clp protease proteolytic subunit 1 [Serratia
           odorifera 4Rx13]
 gi|270044902|gb|EFA17993.1| ATP-dependent Clp protease proteolytic subunit 1 [Serratia
           odorifera 4Rx13]
          Length = 197

 Score =  265 bits (679), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 114/193 (59%), Positives = 150/193 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP VVEQ+++GER++DIYSRLL++RI+F+ G++ D +A L+CAQLLFLEAENP+K I
Sbjct: 5   MLLVPTVVEQSSQGERAFDIYSRLLRDRIIFLNGEVNDAIAELVCAQLLFLEAENPEKPI 64

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +T+G AIYDTM+FI   + T CMG A SMGS LL AGE G R ALPNA +
Sbjct: 65  HLYINSPGGAITSGFAIYDTMRFINAQVHTLCMGTARSMGSFLLMAGEPGHRAALPNASL 124

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
            +HQP GGF GQASDI  HA+++ + K  +  +Y ++CG + EEVE+ LDRD  M+A EA
Sbjct: 125 HVHQPLGGFQGQASDIFIHAEEMRRTKDLVIRLYAEHCGHSAEEVEQVLDRDRFMTADEA 184

Query: 196 CDWGVVDKVLMSR 208
            +WG+VD+VL+ R
Sbjct: 185 VEWGLVDRVLVRR 197


>gi|226489629|emb|CAX74965.1| ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit
           homolog [Schistosoma japonicum]
          Length = 253

 Score =  265 bits (679), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 114/201 (56%), Positives = 161/201 (80%), Gaps = 2/201 (0%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+V+++T  GER+YDIYSRLLK+RI+ + G I D +A L+ AQLL+L++E+ +  I
Sbjct: 46  MSLVPIVLDKTTHGERAYDIYSRLLKDRIICLMGSISDEVAGLVVAQLLYLQSEDKKIPI 105

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG+AIYDTMQFIKPP++T+C+GQA+SMGSLLL+AG  G+RFALP++RI
Sbjct: 106 HIYINSPGGVVTAGLAIYDTMQFIKPPVATWCVGQASSMGSLLLAAGAPGLRFALPHSRI 165

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSG   GQASDI+ HA++I+K++  +N IY ++  ++ E +EK +DRD+ M+A EA
Sbjct: 166 MVHQPSGSAHGQASDIKIHAEEIIKMRNIINTIYERHTKQSQEVIEKWMDRDYFMTAEEA 225

Query: 196 CDWGVVDKVLMSRIDIEEKSK 216
             +G+VD VL  R    +KSK
Sbjct: 226 VSFGIVDMVL--REAPADKSK 244


>gi|145341425|ref|XP_001415810.1| mitochondrial Clp protease, subunit of ClpP peptidase complex
           [Ostreococcus lucimarinus CCE9901]
 gi|144576033|gb|ABO94102.1| mitochondrial Clp protease, subunit of ClpP peptidase complex
           [Ostreococcus lucimarinus CCE9901]
          Length = 232

 Score =  265 bits (679), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 112/206 (54%), Positives = 159/206 (77%)

Query: 4   EGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQL 63
                + +      LVPMV+EQTNRGER +DIYSRLLKERIVFV G I+D++++L  AQL
Sbjct: 18  SSHPSRIAHPRTYALVPMVLEQTNRGERVFDIYSRLLKERIVFVNGPIDDNVSSLTVAQL 77

Query: 64  LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           LFLE+ +P + I +YINSPGG VTAG+ IYDTMQ++ PPI T C+GQA+SMGSLLL+AGE
Sbjct: 78  LFLESVSPTQPIWMYINSPGGSVTAGLGIYDTMQYVSPPIHTLCVGQASSMGSLLLAAGE 137

Query: 124 KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
            G R +LP++R++LHQPSGG SGQASDI  HAQ+I+ ++++L +IY+K+  + ++ +  T
Sbjct: 138 PGQRRSLPHSRVMLHQPSGGASGQASDIAIHAQEILNVRQKLVQIYMKHTKQNFDSIGVT 197

Query: 184 LDRDHIMSASEACDWGVVDKVLMSRI 209
           L+RD  M+  +A ++G++D+V+ +R 
Sbjct: 198 LERDTFMTPEDAKEFGLIDEVIETRP 223


>gi|328952152|ref|YP_004369486.1| ATP-dependent Clp protease proteolytic subunit [Desulfobacca
           acetoxidans DSM 11109]
 gi|328452476|gb|AEB08305.1| ATP-dependent Clp protease proteolytic subunit [Desulfobacca
           acetoxidans DSM 11109]
          Length = 199

 Score =  265 bits (679), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 110/194 (56%), Positives = 155/194 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P+VVEQ++RGER+YDIYSRLL++RI+F+   I D ++ LI AQLLFLE+E+P K+I
Sbjct: 1   MPLIPIVVEQSSRGERAYDIYSRLLRDRIIFLGSAINDEVSNLIVAQLLFLESEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG+VTAG+AIYDTMQ+IKPP+ST CMG  ASM +LLL+AG KG RFALP+ARI
Sbjct: 61  HFYINSPGGLVTAGLAIYDTMQYIKPPVSTLCMGLGASMAALLLAAGAKGKRFALPHARI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQP GGF GQA+D+E  A++I++++  LNE+  ++ G+  E +    +RD  MS  +A
Sbjct: 121 LIHQPLGGFQGQATDVEIQAREILRLREELNEVLARHTGQPRERINTDTERDFYMSGDQA 180

Query: 196 CDWGVVDKVLMSRI 209
            ++G+VD+V+ +R+
Sbjct: 181 KEYGLVDEVITTRM 194


>gi|18420643|ref|NP_568427.1| NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7); serine-type endopeptidase
           [Arabidopsis thaliana]
 gi|75309225|sp|Q9FN42|CLPP2_ARATH RecName: Full=ATP-dependent Clp protease proteolytic subunit 2,
           mitochondrial; AltName: Full=Endopeptidase ClpP2;
           AltName: Full=nClpP7; Flags: Precursor
 gi|9759372|dbj|BAB09831.1| ATP-dependent protease proteolytic subunit ClpP-like protein
           [Arabidopsis thaliana]
 gi|26452073|dbj|BAC43126.1| putative ATP-dependent protease proteolytic subunit ClpP
           [Arabidopsis thaliana]
 gi|28950803|gb|AAO63325.1| At5g23140 [Arabidopsis thaliana]
 gi|332005743|gb|AED93126.1| ATP-dependent Clp protease proteolytic subunit 2 [Arabidopsis
           thaliana]
          Length = 241

 Score =  265 bits (679), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 110/193 (56%), Positives = 149/193 (77%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            L+PMV+E ++RGER+YDI+SRLLKERI+ + G I D  + ++ AQLL+LE+ENP K I 
Sbjct: 31  SLIPMVIEHSSRGERAYDIFSRLLKERIICINGPINDDTSHVVVAQLLYLESENPSKPIH 90

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+NSPGG VTAG+AIYDTMQ+I+ PIST C+GQAASM SLLL+AG KG R +LPNA ++
Sbjct: 91  MYLNSPGGHVTAGLAIYDTMQYIRSPISTICLGQAASMASLLLAAGAKGQRRSLPNATVM 150

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG+SGQA DI  H + IV++   LNE+YVK+ G+  + V   +DRDH M+  EA 
Sbjct: 151 IHQPSGGYSGQAKDITIHTKQIVRVWDALNELYVKHTGQPLDVVANNMDRDHFMTPEEAK 210

Query: 197 DWGVVDKVLMSRI 209
            +G++D+V+  R 
Sbjct: 211 AFGIIDEVIDERP 223


>gi|254722760|ref|ZP_05184548.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           anthracis str. A1055]
          Length = 193

 Score =  265 bits (678), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 103/193 (53%), Positives = 137/193 (70%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P VVEQT  GERSYDIYS LLK+RIV +  +I D +A+ + AQLLFLEAE+ +K+I
Sbjct: 1   MNAIPYVVEQTKLGERSYDIYSSLLKDRIVIIGSEINDQVASSVVAQLLFLEAEDAEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I
Sbjct: 61  FLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+A EA
Sbjct: 121 MIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMTAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD V+  +
Sbjct: 181 KAYGIVDDVVTKK 193


>gi|158335482|ref|YP_001516654.1| ATP-dependent Clp protease proteolytic subunit [Acaryochloris
           marina MBIC11017]
 gi|158305723|gb|ABW27340.1| ATP-dependent Clp protease, proteolytic subunit ClpP, putative
           [Acaryochloris marina MBIC11017]
          Length = 198

 Score =  265 bits (678), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 100/197 (50%), Positives = 143/197 (72%), Gaps = 1/197 (0%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
            + +  VP  +  +   ER  DIY+RL +ERI+F+  ++ D +A  I A LL+L++E+P 
Sbjct: 2   PIGVPSVPYRIPGSPY-ERWVDIYTRLSQERIIFLGQEVTDGLANQIVAFLLYLDSEDPS 60

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K IS+YINSPGG VTAG+AIYDTMQ IK  ++T C+G AASMGS LL+AG  G R ALP+
Sbjct: 61  KPISIYINSPGGSVTAGLAIYDTMQHIKSEVATICVGLAASMGSFLLAAGSPGKRLALPH 120

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           +RI++HQPSGG  GQASDIE  A++I++++R+LN+IY     +  E++EK +DRD  MSA
Sbjct: 121 SRIMIHQPSGGARGQASDIEIEAKEIIRVRRQLNDIYAARTAQPLEKIEKDMDRDFFMSA 180

Query: 193 SEACDWGVVDKVLMSRI 209
            EA ++G++D+V+  R 
Sbjct: 181 HEALEYGLIDQVIEERP 197


>gi|317407024|gb|EFV87052.1| ATP-dependent Clp protease proteolytic subunit [Achromobacter
           xylosoxidans C54]
          Length = 201

 Score =  265 bits (678), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 116/193 (60%), Positives = 157/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQ+ RGERS+DIYSRLL+ERI+F++G++ D ++ L+CAQLLFLEAENP K I
Sbjct: 5   MQLVPMVVEQSGRGERSFDIYSRLLRERIIFLSGEVNDAVSALVCAQLLFLEAENPGKPI 64

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGV+T+G+A+YDTMQFIK P+ T CMG A SMGS LL AGE G R AL NA +
Sbjct: 65  HMYINSPGGVITSGLAMYDTMQFIKSPVHTLCMGTARSMGSFLLMAGEPGKRAALANASL 124

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
            +HQP GGF GQASD+  HA+++ + K+R+  +Y ++CG++YE+VE++LDRD  M+A EA
Sbjct: 125 HVHQPLGGFQGQASDMLIHAEEMQRTKQRIIRLYAEHCGRSYEDVERSLDRDRYMTAEEA 184

Query: 196 CDWGVVDKVLMSR 208
            +WG++D V+ +R
Sbjct: 185 VEWGLIDHVMDAR 197


>gi|104781013|ref|YP_607511.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           entomophila L48]
 gi|122403881|sp|Q1ICA8|CLPP_PSEE4 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|95110000|emb|CAK14705.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           entomophila L48]
          Length = 213

 Score =  265 bits (677), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 119/192 (61%), Positives = 155/192 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+EQ+ RGER+YDIYSRLLKER++F+ G +ED+MA L+ AQLLFLEAENP K+I 
Sbjct: 18  GLVPMVIEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLVVAQLLFLEAENPDKDIH 77

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+ LL+AG  G R  LPN+R++
Sbjct: 78  LYINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAAGAAGKRHCLPNSRVM 137

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQA+DIE HAQ+I+ IK RLNE+   + G++ E +++  +RD+ MSA+ A 
Sbjct: 138 IHQPLGGFQGQATDIEIHAQEILNIKARLNELLAHHTGQSLETIKRDTERDNFMSAARAA 197

Query: 197 DWGVVDKVLMSR 208
           ++G++D V   R
Sbjct: 198 EYGLIDSVYDKR 209


>gi|163746712|ref|ZP_02154069.1| Endopeptidase Clp [Oceanibulbus indolifex HEL-45]
 gi|161379826|gb|EDQ04238.1| Endopeptidase Clp [Oceanibulbus indolifex HEL-45]
          Length = 218

 Score =  265 bits (677), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 119/207 (57%), Positives = 155/207 (74%), Gaps = 1/207 (0%)

Query: 10  DSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           D  + ++  LVPMVVEQT+RGERSYDI+SRLLKERI+FV G I   M+ L+ AQLL LEA
Sbjct: 3   DPINTYMNTLVPMVVEQTSRGERSYDIFSRLLKERIIFVNGPIHSGMSHLVVAQLLHLEA 62

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP KEIS+YINSPGG VTAG++IYDTMQ+IKP +ST   G AASMGS++   GEKGMRF
Sbjct: 63  ENPTKEISMYINSPGGEVTAGLSIYDTMQYIKPKVSTLICGMAASMGSVIAIGGEKGMRF 122

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           ALPNA +++HQPSGG  G A DI   A+ I + + R+ ++YVK+ G+  + V+K LDRD 
Sbjct: 123 ALPNAEVMIHQPSGGSQGMAEDILISARHIERTRERMYQLYVKHSGQPLDVVQKALDRDL 182

Query: 189 IMSASEACDWGVVDKVLMSRIDIEEKS 215
            M+  EA +WG +D+++ SR   E+ +
Sbjct: 183 WMTPEEAKEWGHLDEIVESRGKAEDAA 209


>gi|320106219|ref|YP_004181809.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Terriglobus
           saanensis SP1PR4]
 gi|319924740|gb|ADV81815.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Terriglobus
           saanensis SP1PR4]
          Length = 198

 Score =  265 bits (677), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 111/195 (56%), Positives = 160/195 (82%), Gaps = 3/195 (1%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +GLVPMV+EQT+RGER+YDIYSRLL++ I+F+   I+D++A +I AQLLFL  E+P+K+I
Sbjct: 1   MGLVPMVIEQTSRGERAYDIYSRLLRDNIIFLGTPIDDNIANVIIAQLLFLSGEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +TAGMAIYDTMQ+IK  +ST C+GQAASMG+ LL AG+KG RFALPN+RI
Sbjct: 61  QLYINSPGGSITAGMAIYDTMQYIKNDVSTLCIGQAASMGAFLLMAGKKGKRFALPNSRI 120

Query: 136 LLHQP---SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           L+HQP    GG SGQA++I+ HA++I++I+  +N+I  ++ G+T E++E+  DRD IM++
Sbjct: 121 LIHQPLIMGGGISGQATEIDIHAREILRIRELMNKIQAEHTGQTLEQIERDTDRDFIMNS 180

Query: 193 SEACDWGVVDKVLMS 207
           ++A ++G++D ++  
Sbjct: 181 AQAKEYGLIDDIITR 195


>gi|198433849|ref|XP_002124509.1| PREDICTED: similar to predicted protein isoform 1 [Ciona
           intestinalis]
          Length = 234

 Score =  265 bits (677), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 116/188 (61%), Positives = 152/188 (80%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP V+EQT RGER+YDIYSRLLKERIV +   ++D ++ LI AQLLFL++E+PQK I++Y
Sbjct: 38  VPFVIEQTGRGERTYDIYSRLLKERIVCLMAPVDDFVSGLIVAQLLFLQSESPQKPINMY 97

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           IN+PGG VT+G+AIYDTMQ IK P+ST+ +GQA+SMGSLLL+AGE GMR ALPN+RI++H
Sbjct: 98  INTPGGTVTSGLAIYDTMQLIKCPVSTWVVGQASSMGSLLLAAGEPGMRNALPNSRIMVH 157

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG SGQASDI   A +I K+K +LN++YV++ G+ YE +EK LDRD+ M   EA  +
Sbjct: 158 QPLGGASGQASDIVIQANEIKKVKEKLNKLYVQHTGQEYEVIEKALDRDNFMDPYEAKLF 217

Query: 199 GVVDKVLM 206
           G++D VL 
Sbjct: 218 GLIDNVLE 225


>gi|195051114|ref|XP_001993036.1| GH13604 [Drosophila grimshawi]
 gi|193900095|gb|EDV98961.1| GH13604 [Drosophila grimshawi]
          Length = 255

 Score =  265 bits (677), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 122/215 (56%), Positives = 161/215 (74%), Gaps = 1/215 (0%)

Query: 2   SFEG-CAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           SF+  C+ +      + L+PMVVEQT RGER+YDI+SRLLKERI+ + G I D +++ + 
Sbjct: 12  SFQAKCSTQPLSVRGINLIPMVVEQTGRGERAYDIFSRLLKERIICLMGNITDDISSTVV 71

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFL++EN  K I LYINSPGGVVTAG+AIYDTMQ++KPPI+T+C+GQA SMGSLLL+
Sbjct: 72  AQLLFLQSENVNKPIHLYINSPGGVVTAGLAIYDTMQYVKPPIATWCVGQACSMGSLLLA 131

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG  GMR++LPNARI++HQPSGG  GQA+DI  HA++I+KIKR+L  IYVK+    Y E+
Sbjct: 132 AGAPGMRYSLPNARIMIHQPSGGAQGQATDILIHAEEIIKIKRQLTNIYVKHAQYDYAEM 191

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
              ++RDH M+  EA   G++D VL    +    S
Sbjct: 192 SSRMERDHFMTPEEAKVLGIIDHVLEHPPETVSDS 226


>gi|28377639|ref|NP_784531.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           plantarum WCFS1]
 gi|254555818|ref|YP_003062235.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           plantarum JDM1]
 gi|300767608|ref|ZP_07077518.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308179799|ref|YP_003923927.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|38257529|sp|Q88YH9|CLPP_LACPL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|28270472|emb|CAD63374.1| endopeptidase Clp, proteolytic subunit [Lactobacillus plantarum
           WCFS1]
 gi|254044745|gb|ACT61538.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           plantarum JDM1]
 gi|300494593|gb|EFK29751.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308045290|gb|ADN97833.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 196

 Score =  265 bits (677), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 106/192 (55%), Positives = 149/192 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP V+EQ++RGER+YDIYSRLLK+RI+ ++G IED+MA  I AQLLFL+A++  K+I
Sbjct: 1   MYPVPTVIEQSSRGERAYDIYSRLLKDRIIMLSGPIEDNMANAIIAQLLFLDAQDSGKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVTAG+AIYDTM FIK  + T  MG AASM S+L S+G KG RFALPN+ I
Sbjct: 61  YLYINSPGGVVTAGLAIYDTMNFIKSDVQTIVMGMAASMASVLASSGTKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQPSGG  GQ ++IE  A++I+K ++++N+I   N G++ E++    +RD+ +SA EA
Sbjct: 121 LIHQPSGGAQGQQTEIEIVAEEILKTRKKINQILADNSGQSVEKLNHDTERDNYLSAQEA 180

Query: 196 CDWGVVDKVLMS 207
            D+G++D ++ +
Sbjct: 181 KDYGLIDDIMEN 192


>gi|297182365|gb|ADI18531.1| protease subunit of ATP-dependent clp proteases [uncultured SAR406
           cluster bacterium HF4000_22B16]
          Length = 202

 Score =  265 bits (677), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 114/198 (57%), Positives = 153/198 (77%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           ++    L+PMVVEQT R ER+YDIYSRLLKERIVF+   I+D +++LI AQ LFLEAE+P
Sbjct: 5   QNEIAQLIPMVVEQTGRTERAYDIYSRLLKERIVFLGTPIDDSISSLIIAQFLFLEAEDP 64

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+I LYINSPGG +TAGMAI+DTM +IKP ++T CMGQA+SMG+ LL+ G+KG R ALP
Sbjct: 65  DKDIYLYINSPGGYITAGMAIFDTMNYIKPDVATICMGQASSMGAFLLAGGKKGKRSALP 124

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+RI++HQP GG  GQASDI+  A +I++++ +LN++  K  G+   +VEK  DR++ MS
Sbjct: 125 NSRIMIHQPMGGAEGQASDIKIQADEIIRLRGKLNKLLAKQTGQKISKVEKDSDRNYFMS 184

Query: 192 ASEACDWGVVDKVLMSRI 209
           A EA  +G++D VL SR 
Sbjct: 185 AVEAKKYGIIDTVLESRK 202


>gi|325107893|ref|YP_004268961.1| ATP-dependent Clp protease proteolytic subunit ClpP [Planctomyces
           brasiliensis DSM 5305]
 gi|324968161|gb|ADY58939.1| ATP-dependent Clp protease proteolytic subunit ClpP [Planctomyces
           brasiliensis DSM 5305]
          Length = 202

 Score =  265 bits (677), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 106/191 (55%), Positives = 151/191 (79%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVP VVE+  R ER+ DIYSRLLK+RI+F+  Q+ D ++  I AQLL+L+ ++P+ +I 
Sbjct: 3   TLVPYVVEKNGREERAMDIYSRLLKDRIIFLGTQVNDTISNSIVAQLLYLQFDDPKSDIH 62

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG +TAGMAIYDTMQFI   ++T+C+GQAASMG++LL+AG +G R ALPN+RI+
Sbjct: 63  MYINSPGGSITAGMAIYDTMQFISCDVATYCLGQAASMGAVLLAAGAEGKRAALPNSRIM 122

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP  G  G A+D+E HA++++K+K+R+NEI  K+ G++ EE+E+  DRD+ M+A EA 
Sbjct: 123 IHQPLAGMEGTATDLEIHAREVLKVKKRMNEILQKHTGRSLEELERDTDRDNFMTAEEAR 182

Query: 197 DWGVVDKVLMS 207
           D+G+VDKVL  
Sbjct: 183 DYGLVDKVLEH 193


>gi|225874969|ref|YP_002756428.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Acidobacterium capsulatum ATCC 51196]
 gi|254763781|sp|C1F6W4|CLPP_ACIC5 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|225792091|gb|ACO32181.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Acidobacterium capsulatum ATCC 51196]
          Length = 196

 Score =  265 bits (677), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 110/193 (56%), Positives = 155/193 (80%), Gaps = 1/193 (0%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMV+EQTNRGER+YDIYSRLL++ I+F+   I+D +A L+ AQLLFL AE+P K+I
Sbjct: 1   MALVPMVIEQTNRGERAYDIYSRLLRDNIIFLGTPIDDQIANLVIAQLLFLSAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +TAG+AIYDTMQFIK  + T+C+GQAASMG+ LL +G  G RFALPN+RI
Sbjct: 61  QLYINSPGGSITAGLAIYDTMQFIKNDVVTYCIGQAASMGAFLLMSGTAGKRFALPNSRI 120

Query: 136 LLHQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           L+HQPS GG SGQA+DI+ HA++I++I+   N +  K+ G++ E +E+ ++RD IM+A +
Sbjct: 121 LIHQPSMGGLSGQATDIDIHAREILRIREITNNLMSKHTGQSLERIERDVERDFIMNAPQ 180

Query: 195 ACDWGVVDKVLMS 207
           A ++G++D+++  
Sbjct: 181 AKEYGIIDEIIDR 193


>gi|15888940|ref|NP_354621.1| ATP-dependent Clp protease proteolytic subunit [Agrobacterium
           tumefaciens str. C58]
 gi|21759065|sp|Q8UEX6|CLPP1_AGRT5 RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|15156717|gb|AAK87406.1| ATP-dependent Clp protease, proteolytic subunit [Agrobacterium
           tumefaciens str. C58]
          Length = 202

 Score =  265 bits (677), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 118/195 (60%), Positives = 157/195 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQ++RGERS+DIYSRLL+ERI+F+ G+++D ++ L+CAQLLFLEAENP+K I
Sbjct: 5   MQLVPMVVEQSSRGERSFDIYSRLLRERIIFLNGEVDDTVSALVCAQLLFLEAENPKKPI 64

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG+VT+G A+YDTM++I+ P+ T CMG A SMGS LL AGE G R ALPNA I
Sbjct: 65  HLYINSPGGMVTSGFAMYDTMRYIRAPVHTLCMGTARSMGSFLLMAGEPGTRAALPNASI 124

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQPSGGF GQASD+  HA++I + K R+  +Y ++CG++YEE E  +DRD  M+  EA
Sbjct: 125 LIHQPSGGFQGQASDMLIHAEEIRQTKHRMTRLYAEHCGRSYEEFETAMDRDRFMTVQEA 184

Query: 196 CDWGVVDKVLMSRID 210
            +WG++D++L  R D
Sbjct: 185 LEWGLIDRILEVRED 199


>gi|84686590|ref|ZP_01014483.1| Protease subunit of ATP-dependent Clp protease [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84665503|gb|EAQ11980.1| Protease subunit of ATP-dependent Clp protease [Rhodobacterales
           bacterium HTCC2654]
          Length = 193

 Score =  265 bits (677), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 124/193 (64%), Positives = 160/193 (82%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MVVEQT+RGER+YDI+SRLLKERI+F+ G + D M++LICAQLLFLEAENP KEI++YIN
Sbjct: 1   MVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMSSLICAQLLFLEAENPSKEIAMYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGGVVT+G++IYDTMQ+I+P +ST  +GQAASMGSLLL+AG  GMRF+LPN+RI++HQP
Sbjct: 61  SPGGVVTSGLSIYDTMQYIRPKVSTLVIGQAASMGSLLLTAGAPGMRFSLPNSRIMVHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
           SGG+ GQA+DI  HAQ+  K+K RLN IYVK+ G+  + V   L+RD+ M   +A DWG+
Sbjct: 121 SGGYQGQATDIMIHAQETQKLKDRLNSIYVKHTGQKLKAVVDALERDNFMDPEQAKDWGL 180

Query: 201 VDKVLMSRIDIEE 213
           +D++L SR D  E
Sbjct: 181 IDEILESRGDAPE 193


>gi|323340198|ref|ZP_08080462.1| ATP-dependent Clp protease, protease subunit [Lactobacillus ruminis
           ATCC 25644]
 gi|323092389|gb|EFZ34997.1| ATP-dependent Clp protease, protease subunit [Lactobacillus ruminis
           ATCC 25644]
          Length = 197

 Score =  264 bits (676), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 95/197 (48%), Positives = 147/197 (74%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQ+ +GER+YDIYSRLLK+RI+ V+G++ D MA  + AQLLFL+A++ +K+I
Sbjct: 1   MNLVPTVIEQSAQGERAYDIYSRLLKDRIIMVSGEVTDDMANAVIAQLLFLDAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG V+AG+AIYDTM F+   + T  MG AASM S+L +AG KG RFALPN+ I
Sbjct: 61  YMYINSPGGSVSAGLAIYDTMNFVNADVQTIVMGMAASMASVLSTAGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQ+++I+  A+ I+K ++ +N+I   + G+  E + K  +RD+ M+A +A
Sbjct: 121 MIHQPLGGAQGQSTEIQIAAEHILKTRKLINQILADHSGQDIETINKDTERDNFMTAQQA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
            D+G++D ++ ++  ++
Sbjct: 181 VDYGLIDGIMKNKKKLK 197


>gi|116250938|ref|YP_766776.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|116243107|sp|Q1MK43|CLPP1_RHIL3 RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|115255586|emb|CAK06667.1| putative ATP-dependent Clp protease proteolytic subunit [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 203

 Score =  264 bits (676), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 118/193 (61%), Positives = 160/193 (82%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMV+EQ++RGERS+DIYSRLL+ERI+F+ G++ D ++ L+CAQLLFLEAEN +K I
Sbjct: 5   MQLVPMVIEQSSRGERSFDIYSRLLRERIIFLNGEVNDTVSALVCAQLLFLEAENSKKPI 64

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGGVVT+G+A+YDTM+FI+ P+ T CMG A SMGS LL AGE G R ALPNA I
Sbjct: 65  NLYINSPGGVVTSGLAMYDTMRFIRAPVHTLCMGTARSMGSFLLMAGEAGGRAALPNASI 124

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQPSGGF GQASD+  HA++I+K K+R+  +Y ++CG++YE+ E+ +DRD  M+A EA
Sbjct: 125 LIHQPSGGFQGQASDMMIHAEEILKTKQRMTRLYAEHCGRSYEDFERGMDRDRFMTAEEA 184

Query: 196 CDWGVVDKVLMSR 208
            +WG++D++L  R
Sbjct: 185 LEWGLIDRILTVR 197


>gi|297621812|ref|YP_003709949.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Waddlia
           chondrophila WSU 86-1044]
 gi|297377113|gb|ADI38943.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Waddlia
           chondrophila WSU 86-1044]
          Length = 215

 Score =  264 bits (676), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 98/199 (49%), Positives = 151/199 (75%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
                  L P V+E T RGERS DI+SRLLK+RIVF+   I+DH+A ++ AQLLFL  E+
Sbjct: 12  PFPELSSLTPYVIEDTGRGERSMDIFSRLLKDRIVFIGQDIDDHVANIVVAQLLFLRMED 71

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
           P+K++++Y+NS GG +T+G+AIYD ++++  P+ST+C+GQA+SMG+LLL+AG+KG R+AL
Sbjct: 72  PKKDVNIYVNSRGGYITSGLAIYDVLKWLPCPVSTYCIGQASSMGALLLTAGDKGKRYAL 131

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           PN+RI++HQPSGG  G ++DI   A++I+ +K+R+NEI  +  G+T E++ K L+RD  M
Sbjct: 132 PNSRIMIHQPSGGVGGTSADIALQAKEILFLKKRMNEILAECTGQTEEKIAKDLERDLFM 191

Query: 191 SASEACDWGVVDKVLMSRI 209
           S  EA ++G++D ++  + 
Sbjct: 192 SPEEAKEYGLIDNIIEKKT 210


>gi|330722307|gb|EGH00174.1| ATP-dependent Clp protease proteolytic subunit [gamma
           proteobacterium IMCC2047]
          Length = 210

 Score =  264 bits (676), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 114/198 (57%), Positives = 156/198 (78%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
           + D+   LVPMV+EQT RGERS+DIYSRLLKER++F+ G +EDHMA L+ AQ+LFLE+EN
Sbjct: 9   NHDLISQLVPMVIEQTARGERSFDIYSRLLKERVIFLVGPVEDHMANLVVAQMLFLESEN 68

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
           P K+I LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQAASMG+LLL+ G  G RF L
Sbjct: 69  PDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDVSTLCIGQAASMGALLLAGGAAGKRFCL 128

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           P++R+++HQP GGF GQA+DIE H ++I+ I+ +LN +  K+ G+  +++    DRD+ M
Sbjct: 129 PHSRVMIHQPLGGFQGQATDIEIHTKEILTIRDKLNRVLSKHTGQDLDKIATDTDRDNFM 188

Query: 191 SASEACDWGVVDKVLMSR 208
               A ++G++D+V+ +R
Sbjct: 189 DGHAAVEYGLIDQVMENR 206


>gi|239948026|ref|ZP_04699779.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rickettsia
           endosymbiont of Ixodes scapularis]
 gi|239922302|gb|EER22326.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rickettsia
           endosymbiont of Ixodes scapularis]
          Length = 201

 Score =  264 bits (676), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 123/201 (61%), Positives = 165/201 (82%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP+V+EQT+RGER+YDIYSRLLKERI+FV   +EDHM  LI AQLLFLEAENP+K+I
Sbjct: 1   MSYVPIVIEQTSRGERAYDIYSRLLKERIIFVCSTVEDHMTNLIVAQLLFLEAENPKKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGV+TAG+AIYDTMQ+IKP ++T C+GQA SMGSLLL  GEKGMR++LP++RI
Sbjct: 61  YMYINSPGGVITAGLAIYDTMQYIKPKVATLCIGQACSMGSLLLCGGEKGMRYSLPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG+ GQA+DIE HAQ+ +KIKR LNE+Y K+  +  + +EK+++RD+ MS  EA
Sbjct: 121 MIHQPSGGYKGQATDIEIHAQETLKIKRLLNELYSKHTRQELKHIEKSMERDNFMSPEEA 180

Query: 196 CDWGVVDKVLMSRIDIEEKSK 216
             +G++D ++ SR  +   +K
Sbjct: 181 KKFGIIDNIISSRDAMTMSAK 201


>gi|116333303|ref|YP_794830.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           brevis ATCC 367]
 gi|122270009|sp|Q03SM3|CLPP_LACBA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|116098650|gb|ABJ63799.1| ATP-dependent Clp protease proteolytic subunit ClpP [Lactobacillus
           brevis ATCC 367]
          Length = 198

 Score =  264 bits (676), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 102/198 (51%), Positives = 152/198 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQ++RGER+YDIYSRLLK+RI+ ++G IED MA  I AQLLFL+A++  K+I
Sbjct: 1   MNLVPTVIEQSSRGERAYDIYSRLLKDRIIMLSGPIEDDMANAIIAQLLFLDAQDSTKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGGVV++G+AIYDTM FI+  + T  +G AASM S+L S+G KG RFALP+A++
Sbjct: 61  SLYINSPGGVVSSGLAIYDTMNFIQSDVQTITLGMAASMASVLASSGTKGKRFALPHAQV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQ ++IE  A++I+K +  +N+I  +N G+  E + +  +RD+ +SA EA
Sbjct: 121 MIHQPSGGAQGQQTEIEIAAREILKTRELINKILAENSGQPIERLNQDTERDNYLSAQEA 180

Query: 196 CDWGVVDKVLMSRIDIEE 213
            D+G++D ++ +  + ++
Sbjct: 181 VDYGLIDHIMTNSSEQKK 198


>gi|319788749|ref|YP_004090064.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ruminococcus
           albus 7]
 gi|315450616|gb|ADU24178.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ruminococcus
           albus 7]
          Length = 196

 Score =  264 bits (676), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 102/196 (52%), Positives = 152/196 (77%), Gaps = 3/196 (1%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP VVEQT+RGERS+DI+SRLL +RI+ +   I+DH+A+L+ +QLL+LE+++P+K+I
Sbjct: 1   MALVPYVVEQTSRGERSFDIFSRLLNDRIIMLCEAIDDHVASLVISQLLYLESQDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMAIYDT+Q+I+  ++T C+G AASMG+ LLS+G KG RF+LPN+ I
Sbjct: 61  DLYINSPGGSVTAGMAIYDTIQYIRCDVNTICIGMAASMGAFLLSSGTKGKRFSLPNSEI 120

Query: 136 LLHQP---SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           ++HQP    GG SGQ +D++ H+  +V  + +LN I  +N GK+ E++    +RD+ ++A
Sbjct: 121 MIHQPLIGGGGISGQCTDVKIHSDHLVATREKLNRILAENSGKSIEQIAIDTERDNYLTA 180

Query: 193 SEACDWGVVDKVLMSR 208
            EA ++G++DKV+  R
Sbjct: 181 QEAMEYGLIDKVITKR 196


>gi|153007825|ref|YP_001369040.1| ATP-dependent Clp protease proteolytic subunit [Ochrobactrum
           anthropi ATCC 49188]
 gi|151559713|gb|ABS13211.1| Endopeptidase Clp [Ochrobactrum anthropi ATCC 49188]
          Length = 202

 Score =  264 bits (676), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 118/193 (61%), Positives = 157/193 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQ++RGERS+DIYSRLL+ERI+F+ G++ D ++ LICAQLLFLEAEN ++ I
Sbjct: 5   MQLVPMVVEQSSRGERSFDIYSRLLRERIIFLNGEVNDTVSALICAQLLFLEAENSKQPI 64

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGGVVT+G+AIYDTM++++ P+ T CMG A SMGS LL AGE G R ALPNA +
Sbjct: 65  NLYINSPGGVVTSGLAIYDTMRYVRAPVHTLCMGTARSMGSFLLMAGEPGHRAALPNANL 124

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQPSGGF GQASDI  HA++  + KR +  +Y ++CG+TYEEVE+ LDRD+ M+A   
Sbjct: 125 LVHQPSGGFQGQASDIFIHAEEAQRTKRLMTRLYAEHCGRTYEEVERALDRDNFMTAEAG 184

Query: 196 CDWGVVDKVLMSR 208
            +WG++D++L  R
Sbjct: 185 LEWGLIDRILERR 197


>gi|308233830|ref|ZP_07664567.1| ATP-dependent Clp protease proteolytic subunit ClpP [Atopobium
           vaginae DSM 15829]
 gi|328943800|ref|ZP_08241265.1| ATP-dependent Clp protease, protease subunit [Atopobium vaginae DSM
           15829]
 gi|327491769|gb|EGF23543.1| ATP-dependent Clp protease, protease subunit [Atopobium vaginae DSM
           15829]
          Length = 204

 Score =  264 bits (676), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 104/197 (52%), Positives = 141/197 (71%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            L+P VVEQT RGERSYDI+SRLL +RIVF+   I    A L+ AQLL LE+++P K+I+
Sbjct: 8   PLIPYVVEQTPRGERSYDIFSRLLNDRIVFLGEAITRDSANLVIAQLLHLESQDPDKDIA 67

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYI+SPGG V AG+ I DTM FIKP +ST C+G AASM S+LL+AG KG R  LPN+ ++
Sbjct: 68  LYIDSPGGEVYAGLGILDTMNFIKPDVSTICVGMAASMASVLLAAGAKGKRMCLPNSMVM 127

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPS G  GQ +DI+  A +   I+  +NE+  +  G+T E++ +  +RD+ M A EAC
Sbjct: 128 IHQPSSGAQGQQTDIQIVADETKWIRNHMNELLAQYTGQTVEKINQDTERDNYMRAKEAC 187

Query: 197 DWGVVDKVLMSRIDIEE 213
           D+G+VDKV+ SR +  E
Sbjct: 188 DYGLVDKVITSRAEQAE 204


>gi|148553517|ref|YP_001261099.1| ATP-dependent Clp protease proteolytic subunit [Sphingomonas
           wittichii RW1]
 gi|148498707|gb|ABQ66961.1| Endopeptidase Clp [Sphingomonas wittichii RW1]
          Length = 218

 Score =  264 bits (676), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 119/199 (59%), Positives = 160/199 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVP+V+EQ+NRGERS+DIYSRLL+ERI+FVTGQ+EDHMA+LI AQLLFLE+ENP+K+I 
Sbjct: 17  ALVPVVIEQSNRGERSFDIYSRLLRERIIFVTGQVEDHMASLITAQLLFLESENPKKDIF 76

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGGVVTAG+AI+DTMQ+I+P + T C+GQAASMGS LL+AGE GMR AL N+RI+
Sbjct: 77  MYINSPGGVVTAGLAIHDTMQYIRPRVGTVCIGQAASMGSFLLAAGEPGMRVALTNSRIM 136

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  G A+DIE  A++I++++ RLN +Y K   +  E +E  +DRD  + A EA 
Sbjct: 137 VHQPSGGAQGMAADIEIQAREILRMRHRLNSLYAKYTKQPIEAIEAAMDRDKFLEADEAK 196

Query: 197 DWGVVDKVLMSRIDIEEKS 215
            +G++D+V   R    +++
Sbjct: 197 AFGLIDEVFDKRPSPADEA 215


>gi|33861299|ref|NP_892860.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
 gi|67460516|sp|Q7V1W0|CLPP1_PROMP RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|33633876|emb|CAE19201.1| Clp protease subunit [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
          Length = 196

 Score =  264 bits (675), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 97/192 (50%), Positives = 134/192 (69%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+E++   ER +DIYSRLL+ERI+F+  Q+    A  I AQLLFLEAE+P+K+I +
Sbjct: 1   MIPLVLEESGGSERVFDIYSRLLRERIIFLGEQVTSDTANRIVAQLLFLEAEDPEKDIYM 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I+DTMQ +KP I T C+G AASMG+ LL+AG KG R +L ++RI++
Sbjct: 61  YINSPGGSVYDGLGIFDTMQHVKPDIHTVCVGLAASMGAFLLAAGTKGKRSSLRHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A +I+ +K RLN    +  GK  E ++   DRD  MS  EA +
Sbjct: 121 HQPLGGARGQASDIRIQADEILYLKERLNTELSERTGKELETIKGDTDRDFYMSPQEAVE 180

Query: 198 WGVVDKVLMSRI 209
           +G++D VL  + 
Sbjct: 181 YGLIDLVLDKKP 192


>gi|125591043|gb|EAZ31393.1| hypothetical protein OsJ_15521 [Oryza sativa Japonica Group]
          Length = 221

 Score =  264 bits (675), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 115/189 (60%), Positives = 152/189 (80%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MV+E T+RGER+YDI+SRLLKERIV + G I D  A+L+ AQLLFLE+ENP K + LYIN
Sbjct: 1   MVIEHTSRGERAYDIFSRLLKERIVCIHGPITDDTASLVVAQLLFLESENPAKPVHLYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGGVVTAG+AIYDTMQ+I+ P++T C+GQAASM SLLL+AG +G R ALPNAR+++HQP
Sbjct: 61  SPGGVVTAGLAIYDTMQYIRSPVTTLCIGQAASMASLLLAAGARGERRALPNARVMIHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
           SGG SGQASDI  HA++I+K++ RLN+IY K+  +  + +E+ ++RD  M   EA DWG+
Sbjct: 121 SGGASGQASDIAIHAKEILKVRDRLNKIYAKHTSQAIDRIEQCMERDMFMDPEEAHDWGL 180

Query: 201 VDKVLMSRI 209
           +D+V+  R 
Sbjct: 181 IDEVIEHRP 189


>gi|123968338|ref|YP_001009196.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus str. AS9601]
 gi|123198448|gb|ABM70089.1| Clp protease subunit [Prochlorococcus marinus str. AS9601]
          Length = 195

 Score =  264 bits (675), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 97/192 (50%), Positives = 136/192 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+E++   ER +DIYSRLL+ERI+F+  Q+    A  I AQLLFLEAE+P K+I +
Sbjct: 1   MIPLVLEESGGSERVFDIYSRLLRERIIFLGEQVTSETANRIVAQLLFLEAEDPDKDIYM 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I+DTMQ +KP I T C+G AASMG+ LL+AG KG R +L ++RI++
Sbjct: 61  YINSPGGSVYDGLGIFDTMQHVKPDIHTVCVGLAASMGAFLLAAGTKGKRSSLRHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A +I+ +K RLN    +  GK Y+ +++  DRD  MS +EA +
Sbjct: 121 HQPLGGARGQASDIRIQADEILFLKERLNTELSERTGKDYDTIKEDTDRDFYMSPNEAVE 180

Query: 198 WGVVDKVLMSRI 209
           +G++D VL  + 
Sbjct: 181 YGLIDLVLDKKP 192


>gi|302382854|ref|YP_003818677.1| endopeptidase Clp [Brevundimonas subvibrioides ATCC 15264]
 gi|302193482|gb|ADL01054.1| Endopeptidase Clp [Brevundimonas subvibrioides ATCC 15264]
          Length = 213

 Score =  264 bits (675), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 138/205 (67%), Positives = 164/205 (80%), Gaps = 1/205 (0%)

Query: 9   KDSEDVF-LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           +D  D     LVPMVVEQ++RGER++DI+SRLL+ERI+F+TG  ED MA+LICAQLLFLE
Sbjct: 2   RDPIDYLQSNLVPMVVEQSSRGERAFDIFSRLLRERIIFLTGPFEDGMASLICAQLLFLE 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           +ENP+KEIS+YINSPGG VT+ +AIYDTMQ+IK P+ST  MG AAS GSL+L+AG  G R
Sbjct: 62  SENPKKEISMYINSPGGQVTSALAIYDTMQYIKSPVSTVVMGMAASAGSLILTAGAAGQR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
            ALPNARI++HQPSGGF GQASDIE HA DI   KRRLNEIYV + G+TYEEVEKTLDRD
Sbjct: 122 IALPNARIMVHQPSGGFRGQASDIELHAADIRYTKRRLNEIYVHHTGRTYEEVEKTLDRD 181

Query: 188 HIMSASEACDWGVVDKVLMSRIDIE 212
           H M A  A +WG+VD V   R   +
Sbjct: 182 HFMDAEAAKEWGIVDHVYDKRDQAD 206


>gi|147797194|emb|CAN64666.1| hypothetical protein VITISV_024612 [Vitis vinifera]
          Length = 221

 Score =  264 bits (674), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 108/193 (55%), Positives = 152/193 (78%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            L+PMV+E ++RGER+YDI+SRLLKERIV + G I D  A ++ AQLLFLE+ENP K I 
Sbjct: 9   ALIPMVIEHSSRGERAYDIFSRLLKERIVCINGPISDDTAHVVVAQLLFLESENPSKPIH 68

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+NSPGG V+AG+AIYDTMQ+I+ P++T C+GQAASMGSLLL+AG KG R ALPNA I+
Sbjct: 69  MYLNSPGGAVSAGLAIYDTMQYIRSPVNTICLGQAASMGSLLLAAGAKGERRALPNATIM 128

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG+SGQA D+  H + I+++   LN +Y K+ G++ + ++K +DRD+ M+  EA 
Sbjct: 129 IHQPSGGYSGQAKDMTIHTKQIIRVWDSLNALYAKHTGQSLDIIQKNMDRDYFMTPEEAK 188

Query: 197 DWGVVDKVLMSRI 209
           ++G++D+V+  R 
Sbjct: 189 EFGIIDEVIDQRP 201


>gi|58262368|ref|XP_568594.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134118898|ref|XP_771952.1| hypothetical protein CNBN1320 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50254556|gb|EAL17305.1| hypothetical protein CNBN1320 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57230768|gb|AAW47077.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 260

 Score =  264 bits (674), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 118/208 (56%), Positives = 160/208 (76%), Gaps = 9/208 (4%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVP+VVEQT RGERSYDIYSRLLKER++F+   +    +TL+ AQLLFLEAE+P++ I 
Sbjct: 54  SLVPIVVEQTARGERSYDIYSRLLKERVIFLG-PVNSQDSTLLTAQLLFLEAEDPKRPIK 112

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGVVT+G+AIYDTMQ+I PP+ TFCMGQAASMGSLLL+ GEKG R+AL N+ ++
Sbjct: 113 LYINSPGGVVTSGLAIYDTMQYISPPVHTFCMGQAASMGSLLLAGGEKGHRYALKNSSVM 172

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT-------YEEVEKTLDRDHI 189
           +HQPSGG  GQASDI  HA++I++I+  L +IY ++C +         +  EK L+RD+ 
Sbjct: 173 IHQPSGGAQGQASDIALHAKEILRIRAALTDIYAEHCTRPGEERSAALDRFEKALERDYF 232

Query: 190 MSASEACDWGVVDKVLMSR-IDIEEKSK 216
           M++ EA ++G+VDK++  R  ++ E+ K
Sbjct: 233 MTSEEAVEFGIVDKIVTQRGKEVSEEEK 260


>gi|294507446|ref|YP_003571504.1| ATP-dependent Clp protease proteolytic subunit [Salinibacter ruber
           M8]
 gi|294343774|emb|CBH24552.1| ATP-dependent Clp protease proteolytic subunit [Salinibacter ruber
           M8]
          Length = 261

 Score =  264 bits (674), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 105/194 (54%), Positives = 147/194 (75%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           +    GLVP VVEQT RGER+YDI+SRLLKERIVF+   I D +A L  AQLL+LE+E  
Sbjct: 43  DQPQSGLVPKVVEQTTRGERAYDIFSRLLKERIVFIGTPINDQIANLTVAQLLYLESEGS 102

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            + I++YINSPGGV+ +G+ +YDTMQ+++ PIST C+G AASMGS+LL+ GE G R  LP
Sbjct: 103 SQPINIYINSPGGVIYSGLGVYDTMQYVEAPISTTCVGLAASMGSVLLAGGEDGQRACLP 162

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+R+++HQP GG  GQASDIE  A+++  +K+RL +I   + GK  +++E+  DR+H +S
Sbjct: 163 NSRVMMHQPMGGTEGQASDIEIQAKEMAWLKKRLYQILSFHTGKDIDQIEEDADRNHWLS 222

Query: 192 ASEACDWGVVDKVL 205
           A EA ++G+VD+V+
Sbjct: 223 AEEAQEYGLVDQVM 236


>gi|107101233|ref|ZP_01365151.1| hypothetical protein PaerPA_01002266 [Pseudomonas aeruginosa PACS2]
          Length = 192

 Score =  264 bits (674), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 118/188 (62%), Positives = 151/188 (80%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MVVEQ+ RGER+YDIYSRLLKERI+F+ GQ+ED+MA L+ AQLLFLEAENP+K+I LYIN
Sbjct: 1   MVVEQSARGERAYDIYSRLLKERIIFLVGQVEDYMANLVVAQLLFLEAENPEKDIHLYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+LLL+ G  G R+ LP++R+++HQP
Sbjct: 61  SPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGALLLAGGAAGKRYCLPHSRMMIHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            GGF GQASDIE HA++I+ IK RLN+I   + G+  + + +  DRD  MS  EA  +G+
Sbjct: 121 LGGFQGQASDIEIHAKEILFIKERLNQILAHHTGQPLDVIARDTDRDRFMSGDEAVKYGL 180

Query: 201 VDKVLMSR 208
           +DKV+  R
Sbjct: 181 IDKVMTQR 188


>gi|307718289|ref|YP_003873821.1| ATP-dependent Clp protease proteolytic subunit [Spirochaeta
           thermophila DSM 6192]
 gi|306532014|gb|ADN01548.1| ATP-dependent Clp protease proteolytic subunit [Spirochaeta
           thermophila DSM 6192]
          Length = 206

 Score =  264 bits (674), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 109/193 (56%), Positives = 151/193 (78%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
           +    LVP+V+EQT  GERSYDIYSRLLK+RIVF+ G+I D  A L+ AQLLFLE+++P+
Sbjct: 3   ERMSHLVPIVIEQTGMGERSYDIYSRLLKDRIVFIDGEINDLTADLVVAQLLFLESQDPE 62

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K+IS+YIN+PGG VTAG+AIYDTMQ++KP + T C+GQAASMG+LLL+AG  G R ALP+
Sbjct: 63  KDISVYINTPGGSVTAGLAIYDTMQYVKPDVQTICLGQAASMGALLLTAGTPGKRLALPS 122

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           +RIL+HQP GG  GQA+DI   A+++V+IK+ L   + ++ G+  EEV + L+RD+ M+ 
Sbjct: 123 SRILIHQPWGGVQGQATDISIQAREMVRIKKLLIHYFARHTGRPEEEVAQDLERDYYMTP 182

Query: 193 SEACDWGVVDKVL 205
            EA  +G++D +L
Sbjct: 183 EEAKAYGLIDDIL 195


>gi|315185394|gb|EFU19166.1| ATP-dependent Clp protease proteolytic subunit ClpP [Spirochaeta
           thermophila DSM 6578]
          Length = 206

 Score =  264 bits (674), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 109/193 (56%), Positives = 150/193 (77%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
           +    LVP+V+EQT  GERSYDIYSRLLK+RIVF+ G+I D  A L+ AQLLFLE+++P+
Sbjct: 3   ERMSHLVPIVIEQTGMGERSYDIYSRLLKDRIVFIDGEINDLTADLVVAQLLFLESQDPE 62

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K+IS+YIN+PGG VTAG+AIYDTMQ++KP + T C+GQAASMG+LLL+AG  G R ALP+
Sbjct: 63  KDISVYINTPGGSVTAGLAIYDTMQYVKPDVQTICLGQAASMGALLLTAGTPGKRLALPS 122

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           +RIL+HQP GG  GQA+DI   A+++V+IK+ L   +  + G+  EEV + L+RD+ M+ 
Sbjct: 123 SRILIHQPWGGVQGQATDISIQAREMVRIKKLLIHYFAHHTGRPEEEVAQDLERDYYMTP 182

Query: 193 SEACDWGVVDKVL 205
            EA  +G++D +L
Sbjct: 183 EEAKAYGLIDDIL 195


>gi|42781876|ref|NP_979123.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus ATCC 10987]
 gi|67460501|sp|Q736T1|CLPP1_BACC1 RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|42737800|gb|AAS41731.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
           cereus ATCC 10987]
          Length = 193

 Score =  264 bits (674), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 101/193 (52%), Positives = 136/193 (70%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ +K+I
Sbjct: 1   MNAIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG   AG AI D M  I P + T CMG AAS G+LLL AG KG RFALPN+ I
Sbjct: 61  FLYINSPGGSTXAGFAILDXMNLIXPEVQTLCMGLAASFGALLLLAGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K+K  +N+I     G+  E++    +RD+ M+A EA
Sbjct: 121 MIHQPLGGVKGQATEIEITAKRILKLKHDINKIIADRTGQPIEKIAHDTERDYFMTAEEA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD V+  +
Sbjct: 181 KEYGIVDGVVEKK 193


>gi|242822497|ref|XP_002487898.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Talaromyces
           stipitatus ATCC 10500]
 gi|218712819|gb|EED12244.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Talaromyces
           stipitatus ATCC 10500]
          Length = 262

 Score =  264 bits (674), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 103/204 (50%), Positives = 151/204 (74%), Gaps = 4/204 (1%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
              P V E    G  +YDI+SRLLKERI+ + G++++  +  I AQLLFLEA++P+K I 
Sbjct: 52  TPTPFVTETVGGGWHTYDIFSRLLKERIICLNGEVDETTSASIVAQLLFLEADSPEKPIH 111

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAG+AIYDTM +I+ P++T C+GQAASMGSLLL  G  G R+ LP++ I+
Sbjct: 112 LYINSPGGSVTAGLAIYDTMTYIQSPVNTICVGQAASMGSLLLCGGHAGKRYCLPHSSIM 171

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKN-CGK---TYEEVEKTLDRDHIMSA 192
           +HQPSGG+ GQASDI  HA++I++++ +LN+IY ++  GK   + +E+EK ++RD+ M A
Sbjct: 172 IHQPSGGYFGQASDIAIHAKEILRVRTQLNKIYQRHLTGKKQLSLDEIEKLMERDYFMGA 231

Query: 193 SEACDWGVVDKVLMSRIDIEEKSK 216
            EA + G+VD++L  R+  E +++
Sbjct: 232 QEALEMGIVDEILDRRLKSENETE 255


>gi|254441469|ref|ZP_05054962.1| Clp protease [Octadecabacter antarcticus 307]
 gi|198251547|gb|EDY75862.1| Clp protease [Octadecabacter antarcticus 307]
          Length = 209

 Score =  264 bits (674), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 119/208 (57%), Positives = 159/208 (76%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  D ++ LVPMVVEQT RGER+YDI+SRLLKERI+FV G I D M+ L+ AQLL LEA
Sbjct: 2   QDPIDTYMNLVPMVVEQTARGERAYDIFSRLLKERIIFVNGPIHDGMSQLVVAQLLHLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           ENP+KEIS+YINSPGG V +GM+IYDTMQ+I+P +ST   G AASMGS++   GEKGMRF
Sbjct: 62  ENPKKEISMYINSPGGAVHSGMSIYDTMQYIRPKVSTLICGMAASMGSVIAVGGEKGMRF 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPN+ I++HQPSGG  G+ASD+   A+ I + + R  ++Y+K+ G+T++ VEK LDRD 
Sbjct: 122 SLPNSEIMVHQPSGGSQGKASDMLITARHIEQTRERFYKLYMKHTGQTHKSVEKALDRDT 181

Query: 189 IMSASEACDWGVVDKVLMSRIDIEEKSK 216
            M+  EA +WG +D+++ SR   E + K
Sbjct: 182 WMTPEEAKEWGHLDEIVESRGKAEGEDK 209


>gi|81428144|ref|YP_395143.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus sakei
           subsp. sakei 23K]
 gi|90101409|sp|Q38Y96|CLPP_LACSS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|78609785|emb|CAI54831.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           sakei subsp. sakei 23K]
          Length = 194

 Score =  264 bits (674), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 108/193 (55%), Positives = 151/193 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQT+RGER+YDIYSRLLK+RI+ ++G++ D MA  I AQLLFL+A++  K+IS+
Sbjct: 2   LVPTVIEQTSRGERAYDIYSRLLKDRIIMLSGEVNDQMANTIIAQLLFLDAQDSDKDISI 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+AI DTM FIK  + T  MG AASM S+LLSAG KG RFALPN+ +L+
Sbjct: 62  YINSPGGSVTAGLAIMDTMNFIKSDVQTIAMGMAASMASVLLSAGTKGKRFALPNSTVLI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQ ++IE  A++I+K ++RLN+I   N G+T+E+++   DRD+ M+A EA D
Sbjct: 122 HQPLGGAQGQQTEIEIAAREILKTRKRLNQILADNSGQTFEKLQADTDRDNYMTAQEAKD 181

Query: 198 WGVVDKVLMSRID 210
           +G++D +++++  
Sbjct: 182 YGLIDDIMVNQPK 194


>gi|123966075|ref|YP_001011156.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus str. MIT 9515]
 gi|123200441|gb|ABM72049.1| Clp protease subunit [Prochlorococcus marinus str. MIT 9515]
          Length = 196

 Score =  264 bits (674), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 97/192 (50%), Positives = 135/192 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+E++   ER +DIYSRLL+ERI+F+  Q+    A  I AQLLFLEAE+P+K+I +
Sbjct: 1   MIPLVLEESGGSERVFDIYSRLLRERIIFLGEQVTSDTANRIVAQLLFLEAEDPEKDIYM 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I+DTMQ +KP I T C+G AASMG+ LL+AG KG R +L ++RI++
Sbjct: 61  YINSPGGSVYDGLGIFDTMQHVKPDIHTVCVGLAASMGAFLLAAGTKGKRSSLRHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A +I+ +K RLN    +  GK  E +++  DRD  MS  EA +
Sbjct: 121 HQPLGGARGQASDIRIQADEILYLKERLNSELSERTGKNLETIKEDTDRDFYMSPLEAVE 180

Query: 198 WGVVDKVLMSRI 209
           +G++D VL  + 
Sbjct: 181 YGLIDLVLDKKP 192


>gi|302335570|ref|YP_003800777.1| ATP-dependent Clp protease proteolytic subunit ClpP [Olsenella uli
           DSM 7084]
 gi|301319410|gb|ADK67897.1| ATP-dependent Clp protease proteolytic subunit ClpP [Olsenella uli
           DSM 7084]
          Length = 204

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 102/194 (52%), Positives = 139/194 (71%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            L+P V+EQT RGERSYDIYSRLL +RIVF+  +I    A L+ AQLL LE+++P K+IS
Sbjct: 8   PLIPYVIEQTPRGERSYDIYSRLLNDRIVFLGEEITRDSANLVIAQLLHLESQDPDKDIS 67

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYI+SPGG V AG+ I DTM FIKP +ST C+G AASM S+LL+AG  G R ALPN+ I+
Sbjct: 68  LYIDSPGGEVYAGLGILDTMNFIKPDVSTICVGMAASMASVLLAAGTPGKRLALPNSMIM 127

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPS G  GQ +DI+  A +   I+  +NE+  +  G++ E++    +RD+ + ASEA 
Sbjct: 128 IHQPSSGAQGQQTDIQIVADETKWIRNHMNELLAQYTGQSVEKINADTERDNYLRASEAA 187

Query: 197 DWGVVDKVLMSRID 210
            +G+VDKV+ SR +
Sbjct: 188 AYGLVDKVISSRTE 201


>gi|218961379|ref|YP_001741154.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Candidatus Cloacamonas acidaminovorans]
 gi|167730036|emb|CAO80948.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
           proteases [Candidatus Cloacamonas acidaminovorans]
          Length = 194

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 106/194 (54%), Positives = 154/194 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP+V+EQ  R ER+YDIYSRLLK+RIVFV G IED++A  + AQLL LE E+P+++I
Sbjct: 1   MSFVPIVIEQVGRTERAYDIYSRLLKDRIVFVGGVIEDNLANTVVAQLLHLEGEDPERDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG+++AG+AIYDTMQ+IKP +ST C+GQAASM ++LL+AG  G R ALPN+RI
Sbjct: 61  YMYINSPGGIISAGLAIYDTMQYIKPRVSTICIGQAASMAAVLLAAGAPGKRSALPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DIE  A++I+ ++ R+NEI  K+ G++ E++ +  +R++ MSA EA
Sbjct: 121 MIHQPMGGAQGQATDIEIQAKEILYLRGRMNEILHKHSGQSIEKIMEDTERNYFMSAEEA 180

Query: 196 CDWGVVDKVLMSRI 209
            ++G++D+V+  R 
Sbjct: 181 MEYGIIDEVISVRK 194


>gi|325293013|ref|YP_004278877.1| ATP-dependent Clp protease, proteolytic subunit [Agrobacterium sp.
           H13-3]
 gi|325060866|gb|ADY64557.1| ATP-dependent Clp protease, proteolytic subunit [Agrobacterium sp.
           H13-3]
          Length = 203

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 118/196 (60%), Positives = 156/196 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQ+ RGERS+DIYSRLL+ERI+F+ G++ D ++ L+CAQLLFLEAENP+K I
Sbjct: 5   MQLVPMVVEQSARGERSFDIYSRLLRERIIFLNGEVNDAVSALVCAQLLFLEAENPKKPI 64

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVT+G+A+YDTM++I+ P+ T CMG A SMGS LL AGE G R ALPNA I
Sbjct: 65  HLYINSPGGVVTSGLAMYDTMRYIRAPVHTLCMGTARSMGSFLLMAGEPGARAALPNASI 124

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQPSGGF GQASD+  HA++I + K R+  +Y ++C ++Y+E E  +DRD  M+  EA
Sbjct: 125 LIHQPSGGFQGQASDMLIHAEEIRQTKHRMTRLYAEHCKRSYDEFEAAMDRDRFMTVEEA 184

Query: 196 CDWGVVDKVLMSRIDI 211
            +WG++D+VL  R D+
Sbjct: 185 LEWGLIDRVLDVREDV 200


>gi|302673690|ref|XP_003026531.1| hypothetical protein SCHCODRAFT_86223 [Schizophyllum commune H4-8]
 gi|300100214|gb|EFI91628.1| hypothetical protein SCHCODRAFT_86223 [Schizophyllum commune H4-8]
          Length = 245

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 118/205 (57%), Positives = 149/205 (72%), Gaps = 7/205 (3%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           +     LVPMV+EQT RGERSYDI+SRLL+ER+V + G I D  + LI +QLLFLEAE  
Sbjct: 37  DPPSANLVPMVIEQTGRGERSYDIFSRLLRERVVMLYGPIRDTDSALIVSQLLFLEAEET 96

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K I LYINSPGG VTAG+AIYDTMQ++  PI T+C+G AASMGSLLL+AGEKG R  LP
Sbjct: 97  SKPIHLYINSPGGSVTAGLAIYDTMQYVSSPIHTYCIGCAASMGSLLLAAGEKGKRHCLP 156

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYE-------EVEKTL 184
           NA I++HQPSGG SGQASD+  HA++I++++  L  IY K+C K  E         E+ L
Sbjct: 157 NASIMIHQPSGGASGQASDVAIHAKEILRVREALTGIYQKHCAKPDESEAEGLARFERAL 216

Query: 185 DRDHIMSASEACDWGVVDKVLMSRI 209
           +RD+ M+A EA D+G+VD +L  R 
Sbjct: 217 ERDYFMTAKEAIDFGIVDGILEKRP 241


>gi|222087754|ref|YP_002546291.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Agrobacterium
           radiobacter K84]
 gi|221725202|gb|ACM28358.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Agrobacterium
           radiobacter K84]
          Length = 214

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 114/200 (57%), Positives = 157/200 (78%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
                + LVPMV+EQ++RGERS+DIYSRLL+ERI+F+ G++ D ++ L+CAQLLFLEAEN
Sbjct: 7   PMSEAMQLVPMVIEQSSRGERSFDIYSRLLRERIIFLNGEVNDTVSALVCAQLLFLEAEN 66

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
            +K ISLYINSPGGVVT+G+A+YDTM++I+ P+ T CMG A SMGS LL AG+ G R AL
Sbjct: 67  SRKPISLYINSPGGVVTSGLAMYDTMRYIRAPVHTLCMGTARSMGSFLLMAGQAGERSAL 126

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           PN+ I +HQP GGF GQASD+  HA ++ + K R+  +Y ++CG+TYEE E+ +DRDH M
Sbjct: 127 PNSSIHIHQPLGGFQGQASDMLIHAAEMERTKHRMTRLYAEHCGRTYEEFERAMDRDHFM 186

Query: 191 SASEACDWGVVDKVLMSRID 210
           +A +A +WG++D++L  R +
Sbjct: 187 TAEQALEWGLIDRILQVREE 206


>gi|229185008|ref|ZP_04312198.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           BGSC 6E1]
 gi|228598483|gb|EEK56113.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           BGSC 6E1]
          Length = 193

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 103/193 (53%), Positives = 137/193 (70%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P VVEQT  GERSYDIYSRLLK+RIV +  +I D +A+ + AQLLFLEAE+ +K+I
Sbjct: 1   MNAIPYVVEQTKLGERSYDIYSRLLKDRIVIIGSEINDQVASSVVAQLLFLEAEDAEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I
Sbjct: 61  FLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K+K  +N++  +   +  E V    +RD+ M+A EA
Sbjct: 121 MIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTEQPIERVAHDTERDYFMTAEEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G+VD V+  +
Sbjct: 181 KAYGIVDDVVTKK 193


>gi|83814886|ref|YP_445563.1| Clp protease [Salinibacter ruber DSM 13855]
 gi|83756280|gb|ABC44393.1| Clp protease [Salinibacter ruber DSM 13855]
          Length = 246

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 105/194 (54%), Positives = 147/194 (75%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           +    GLVP VVEQT RGER+YDI+SRLLKERIVF+   I D +A L  AQLL+LE+E  
Sbjct: 28  DQPQSGLVPKVVEQTTRGERAYDIFSRLLKERIVFIGTPINDQIANLTVAQLLYLESEGS 87

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            + I++YINSPGGV+ +G+ +YDTMQ+++ PIST C+G AASMGS+LL+ GE G R  LP
Sbjct: 88  SQPINIYINSPGGVIYSGLGVYDTMQYVEAPISTTCVGLAASMGSVLLAGGEDGQRACLP 147

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+R+++HQP GG  GQASDIE  A+++  +K+RL +I   + GK  +++E+  DR+H +S
Sbjct: 148 NSRVMMHQPMGGTEGQASDIEIQAKEMAWLKKRLYQILSFHTGKDIDQIEEDADRNHWLS 207

Query: 192 ASEACDWGVVDKVL 205
           A EA ++G+VD+V+
Sbjct: 208 AEEAQEYGLVDQVM 221


>gi|228997711|ref|ZP_04157318.1| ATP-dependent Clp protease proteolytic subunit [Bacillus mycoides
           Rock3-17]
 gi|228762055|gb|EEM10994.1| ATP-dependent Clp protease proteolytic subunit [Bacillus mycoides
           Rock3-17]
          Length = 194

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 106/194 (54%), Positives = 138/194 (71%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
            +  +P VVEQT  GERSYDIYSRLLK+RIV +  +I D +A+ + AQLLFLEAE+ +K+
Sbjct: 1   MMNTIPYVVEQTKLGERSYDIYSRLLKDRIVMIGSEINDQVASSVVAQLLFLEAEDAEKD 60

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL AG KG RFALPN+ 
Sbjct: 61  IFLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLAGAKGKRFALPNSE 120

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQP GG  GQA++IE  A+ I+K+K  +N+I     G+  E+V    +RD+ M+A E
Sbjct: 121 IMIHQPLGGVKGQATEIEITAKRILKLKHDINKIISDRTGQPVEKVALDTERDYFMTAEE 180

Query: 195 ACDWGVVDKVLMSR 208
           A  +G+VD V+  +
Sbjct: 181 AKIYGIVDAVIEKK 194


>gi|110633884|ref|YP_674092.1| ATP-dependent Clp protease proteolytic subunit ClpP [Mesorhizobium
           sp. BNC1]
 gi|116243115|sp|Q11I48|CLPP2_MESSB RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|110284868|gb|ABG62927.1| ATP-dependent Clp protease proteolytic subunit ClpP [Chelativorans
           sp. BNC1]
          Length = 208

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 125/194 (64%), Positives = 162/194 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+PMVVEQ+ RGERS+DI+SRLL+ERI+F+ GQ++D+ A L+CAQ+L LEAENP+KEI
Sbjct: 5   MNLIPMVVEQSARGERSFDIFSRLLRERIIFLNGQVDDNSAALVCAQMLHLEAENPKKEI 64

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           + YINSPGGVV++G AIYDTMQFIK P++T C+G AASMGS LL AGE+GMR ALPNA I
Sbjct: 65  AFYINSPGGVVSSGFAIYDTMQFIKCPVATLCLGTAASMGSFLLMAGERGMRVALPNASI 124

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +LHQP GGF GQASDIERHAQ++++ KRR+  +Y ++CG+  E+VE+TLDRD  M+A +A
Sbjct: 125 ILHQPLGGFQGQASDIERHAQNVMRHKRRMIRLYAEHCGRAEEDVERTLDRDFFMTAEDA 184

Query: 196 CDWGVVDKVLMSRI 209
            +WG+VD V   R 
Sbjct: 185 REWGLVDHVYRRRA 198


>gi|315648325|ref|ZP_07901425.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
           vortex V453]
 gi|315276260|gb|EFU39604.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
           vortex V453]
          Length = 193

 Score =  263 bits (672), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 109/192 (56%), Positives = 142/192 (73%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + +VP VVEQTNRGERSYDIYSRLLK+RIVFV   I+D +A  I AQLLFL AE+P+K+I
Sbjct: 1   MNIVPYVVEQTNRGERSYDIYSRLLKDRIVFVGAAIDDAIANSIIAQLLFLAAEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG V+AG  IYDTMQ IKP +ST C G AAS G++LL AG  G R ALPN+ I
Sbjct: 61  HMYINSPGGSVSAGFGIYDTMQIIKPQVSTICTGFAASYGAILLLAGATGKRLALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI   A+ I+K + +L  I  +  G++ E VE  ++RD+ MSA EA
Sbjct: 121 MIHQPHGGVQGQATDIAITAKRIIKTREKLAHIISERTGQSVERVEMDMERDYFMSAQEA 180

Query: 196 CDWGVVDKVLMS 207
            D+G++D ++ +
Sbjct: 181 KDYGIIDDIVTN 192


>gi|331701681|ref|YP_004398640.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           buchneri NRRL B-30929]
 gi|329129024|gb|AEB73577.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           buchneri NRRL B-30929]
          Length = 197

 Score =  263 bits (672), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 103/197 (52%), Positives = 150/197 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQ+  GER+YDIYSRLLK+RI+ ++G IED MA  I AQLLFL+A++ +K+I
Sbjct: 1   MNLVPTVIEQSAGGERAYDIYSRLLKDRIIMLSGPIEDDMANAIIAQLLFLDAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+T+GMAIYDTM F+K  + T  MG AASM S+L S+G KG RFALP+A++
Sbjct: 61  YLYINSPGGVITSGMAIYDTMNFVKSDVQTIVMGMAASMASVLASSGAKGKRFALPHAQV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQPSGG  GQ ++IE  A++I+K ++ +N +  +N G+  E++ K  +RD+ ++A EA
Sbjct: 121 LIHQPSGGAQGQQTEIEIAAEEILKARKMINNLLAENSGQPIEKINKDTERDNYLTAQEA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
            D+G++D ++ S  + +
Sbjct: 181 VDYGLLDGIMTSSSEKQ 197


>gi|124013817|sp|Q2S2L8|CLPP1_SALRD RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
          Length = 233

 Score =  263 bits (672), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 105/194 (54%), Positives = 147/194 (75%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           +    GLVP VVEQT RGER+YDI+SRLLKERIVF+   I D +A L  AQLL+LE+E  
Sbjct: 15  DQPQSGLVPKVVEQTTRGERAYDIFSRLLKERIVFIGTPINDQIANLTVAQLLYLESEGS 74

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            + I++YINSPGGV+ +G+ +YDTMQ+++ PIST C+G AASMGS+LL+ GE G R  LP
Sbjct: 75  SQPINIYINSPGGVIYSGLGVYDTMQYVEAPISTTCVGLAASMGSVLLAGGEDGQRACLP 134

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+R+++HQP GG  GQASDIE  A+++  +K+RL +I   + GK  +++E+  DR+H +S
Sbjct: 135 NSRVMMHQPMGGTEGQASDIEIQAKEMAWLKKRLYQILSFHTGKDIDQIEEDADRNHWLS 194

Query: 192 ASEACDWGVVDKVL 205
           A EA ++G+VD+V+
Sbjct: 195 AEEAQEYGLVDQVM 208


>gi|170740561|ref|YP_001769216.1| endopeptidase Clp [Methylobacterium sp. 4-46]
 gi|168194835|gb|ACA16782.1| Endopeptidase Clp [Methylobacterium sp. 4-46]
          Length = 211

 Score =  263 bits (672), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 125/202 (61%), Positives = 157/202 (77%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           D    +  LVPMVVEQ++RGER++DIYSRLL+ERIVF TG ++D  A+L  AQLLFLEAE
Sbjct: 3   DLVTRYASLVPMVVEQSSRGERAFDIYSRLLRERIVFFTGAVDDQTASLTVAQLLFLEAE 62

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP+KEISLYINSPGGVVT+G+AIYDTMQFI+ P+ST C+GQAASMGSLLL+AG  G RFA
Sbjct: 63  NPKKEISLYINSPGGVVTSGLAIYDTMQFIRCPVSTLCVGQAASMGSLLLAAGAPGQRFA 122

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
             NARI++HQP GGF GQA+DI  HA++   IKRR+ EIY ++ G+ Y  VE+ L+RD  
Sbjct: 123 TANARIMVHQPIGGFQGQATDIMIHARETEAIKRRMTEIYARHTGQDYATVERALERDTF 182

Query: 190 MSASEACDWGVVDKVLMSRIDI 211
           +    A  +G++D VL  R +I
Sbjct: 183 LDPEAARAFGLIDGVLTGRPEI 204


>gi|300856458|ref|YP_003781442.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           ljungdahlii DSM 13528]
 gi|300436573|gb|ADK16340.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           ljungdahlii DSM 13528]
          Length = 194

 Score =  263 bits (672), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 113/194 (58%), Positives = 151/194 (77%), Gaps = 2/194 (1%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP+V++ TN GERSYDI+SRLLK+RIV + GQ+ D  A+ I AQLLFLE++NP  +I
Sbjct: 1   MSYVPVVIDHTNAGERSYDIFSRLLKDRIVMLNGQVTDEAASSIVAQLLFLESDNPDSDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           + YINSPGG +TAGMAIYDTMQ+I+  +ST C+G AASMGS LL+AG KG RFALPN+ I
Sbjct: 61  NFYINSPGGSITAGMAIYDTMQYIRSDVSTICVGMAASMGSFLLAAGAKGKRFALPNSEI 120

Query: 136 LLHQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           L+HQPS  GG  GQA+DIE H + ++ IK+++N +Y +  GK  E++EK ++RD+ MSA 
Sbjct: 121 LIHQPSVYGGMQGQATDIEIHTKWLLGIKKKMNRLYSEMTGKPIEKIEKDVERDYFMSAK 180

Query: 194 EACDWGVVDKVLMS 207
           EA D+G+VDK+L  
Sbjct: 181 EALDYGLVDKILSK 194


>gi|163847092|ref|YP_001635136.1| endopeptidase Clp [Chloroflexus aurantiacus J-10-fl]
 gi|222524926|ref|YP_002569397.1| Endopeptidase Clp [Chloroflexus sp. Y-400-fl]
 gi|163668381|gb|ABY34747.1| Endopeptidase Clp [Chloroflexus aurantiacus J-10-fl]
 gi|222448805|gb|ACM53071.1| Endopeptidase Clp [Chloroflexus sp. Y-400-fl]
          Length = 221

 Score =  263 bits (672), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 94/196 (47%), Positives = 143/196 (72%), Gaps = 1/196 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+PMVVE T+RGER++DIYSRLLKERIV +   I+D +A LI AQLLFLE+E+P ++I L
Sbjct: 27  LIPMVVESTSRGERAFDIYSRLLKERIVILGTPIDDQIANLIVAQLLFLESEDPDRDIWL 86

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+ IYDTM  I+P ++T C+G A SM + +L+ G KG R++LP++ I +
Sbjct: 87  YINSPGGSVTAGLGIYDTMHHIRPDVATVCVGMAGSMATPILAGGAKGKRYSLPHSTIHM 146

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           H   GG  G A D+E  A++++++++ + E+  K+ G+  E + K  DRD  M+  +A +
Sbjct: 147 HPAGGGARGYAPDVEIMARELLRLQQLVRELLAKDTGQPIERIAKDFDRDLFMTPEQAKE 206

Query: 198 WGVVDKVLMSRIDIEE 213
           +G++D++L  R D+++
Sbjct: 207 YGIIDEILT-REDVKK 221


>gi|299755201|ref|XP_001828495.2| ATP-dependent Clp protease proteolytic subunit [Coprinopsis cinerea
           okayama7#130]
 gi|298411115|gb|EAU93328.2| ATP-dependent Clp protease proteolytic subunit [Coprinopsis cinerea
           okayama7#130]
          Length = 254

 Score =  263 bits (672), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 119/212 (56%), Positives = 154/212 (72%), Gaps = 7/212 (3%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
           SE     LVPMV+EQT RGERSYDI+SRLL+ER++ + G I D  +TL+ AQLLFLEAE+
Sbjct: 39  SEPTQSNLVPMVIEQTGRGERSYDIFSRLLRERVIMLHGPIRDTDSTLVVAQLLFLEAED 98

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
             K I LYINSPGG VTAG+AIYDTMQ++  PI T+ +G AASMGSLLL+AG KG R  L
Sbjct: 99  STKPIHLYINSPGGSVTAGLAIYDTMQYVSAPIHTYGLGLAASMGSLLLAAGAKGRRHCL 158

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYE-------EVEKT 183
           PNA I++HQPSGG SGQA+DI  HA++I++I++ L  IY ++C K  E         E  
Sbjct: 159 PNASIMIHQPSGGASGQATDIAIHAKEILRIRQLLTGIYQRHCAKEGETEAAGLKRFETA 218

Query: 184 LDRDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
           L+RD+ M+A EA ++G+VD +L  R  +EE +
Sbjct: 219 LERDYYMTAQEALEFGIVDGILEKRPPLEEGA 250


>gi|254409743|ref|ZP_05023524.1| Clp protease [Microcoleus chthonoplastes PCC 7420]
 gi|196183740|gb|EDX78723.1| Clp protease [Microcoleus chthonoplastes PCC 7420]
          Length = 198

 Score =  263 bits (672), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 100/193 (51%), Positives = 141/193 (73%), Gaps = 2/193 (1%)

Query: 19  VPMVVEQTNRGE--RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  Q          DIY+RL +ERI+F+  +++D +   I A +L+L++E+  K+I 
Sbjct: 5   VPKVPYQLPGSPYSDWIDIYNRLYRERIIFLGKEVDDEITNQIIAVMLYLDSEDNNKDIY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGMAIYDTMQ IK  + T C+G AASMGS LL+AG++G R ALP++RI+
Sbjct: 65  LYINSPGGSVTAGMAIYDTMQHIKSDVVTICVGLAASMGSFLLTAGKQGKRLALPHSRIM 124

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  GQA+DIE  A++I++I+R+LN+IY    G+T E++EK +DRD  MSA EA 
Sbjct: 125 IHQPSGGVRGQATDIEIEAREILRIRRQLNQIYADKTGQTVEKIEKDIDRDFFMSAQEAK 184

Query: 197 DWGVVDKVLMSRI 209
           ++G++D+V+  R 
Sbjct: 185 EYGLIDRVIEERA 197


>gi|239624537|ref|ZP_04667568.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520923|gb|EEQ60789.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 196

 Score =  262 bits (671), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 103/196 (52%), Positives = 143/196 (72%), Gaps = 3/196 (1%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P V+EQT+RGERSYDI+SRLL +RI+F+  ++ D  A+LI AQ+LFLEA++ +K+I
Sbjct: 1   MSTIPYVIEQTSRGERSYDIFSRLLSDRIIFLGEEVSDVSASLITAQMLFLEAQDLEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG AIYDTMQFI+  +ST C+G AAS G+ LL+ G KG R ALPNA I
Sbjct: 61  QLYINSPGGSVTAGFAIYDTMQFIRCDVSTICIGLAASFGAFLLAGGTKGKRLALPNAEI 120

Query: 136 LLHQPSGG---FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           ++HQP+       GQASDI+  +  ++K ++RLN I   N GK+  +V    +RD+ MSA
Sbjct: 121 MIHQPAIHGSGIQGQASDIKIVSDHMLKSRQRLNRILADNTGKSIAQVAADTERDYYMSA 180

Query: 193 SEACDWGVVDKVLMSR 208
            EA ++G++DK++  R
Sbjct: 181 GEAVEYGLIDKIIDRR 196


>gi|261366992|ref|ZP_05979875.1| Clp protease [Subdoligranulum variabile DSM 15176]
 gi|282571110|gb|EFB76645.1| Clp protease [Subdoligranulum variabile DSM 15176]
          Length = 196

 Score =  262 bits (671), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 98/195 (50%), Positives = 145/195 (74%), Gaps = 3/195 (1%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT RGERSYDI+SRLL +RI+ ++  +    A+++ AQLL+LE ++P+K+I
Sbjct: 1   MSLVPYVIEQTARGERSYDIFSRLLNDRIIVLSEDVNSTSASVVVAQLLYLEGQDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG ++ GMAI+DTM +IK  +ST C+G AASMGS LL++G KG RFALPN+ I
Sbjct: 61  YFYINSPGGSISDGMAIHDTMNYIKCDVSTICIGMAASMGSFLLASGTKGKRFALPNSEI 120

Query: 136 LLHQP---SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           L+HQP    GG SGQA+DI+ HA  I+ I+ R+N++Y +  G+  E +++  +RD+ M+A
Sbjct: 121 LIHQPLISGGGISGQATDIQIHANHIIHIRERMNQLYSQYTGQALETIQRDTERDNYMTA 180

Query: 193 SEACDWGVVDKVLMS 207
            +A ++G++D +L  
Sbjct: 181 QQAKEYGLIDDILYK 195


>gi|257784419|ref|YP_003179636.1| Endopeptidase Clp [Atopobium parvulum DSM 20469]
 gi|257472926|gb|ACV51045.1| Endopeptidase Clp [Atopobium parvulum DSM 20469]
          Length = 202

 Score =  262 bits (671), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 101/195 (51%), Positives = 139/195 (71%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P V+EQT RGERSYDIYSRLL +RIVF+   +    A L+ AQLL LE+++P K+I
Sbjct: 7   IPTIPYVIEQTPRGERSYDIYSRLLNDRIVFLGEPVTRDSANLVIAQLLHLESQDPDKDI 66

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYI+SPGG V AG+ I DTM FIKP +ST C+G AASM ++LL+AG KG R ALPN+ +
Sbjct: 67  SLYIDSPGGDVYAGLGILDTMNFIKPDVSTICVGMAASMSAVLLAAGAKGKRLALPNSMV 126

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPS G  GQ +DI+  A +   I+  +NE+     G++ E+V    +RD+ + A EA
Sbjct: 127 MIHQPSSGVQGQQTDIQIVADETKWIREHINELLSDYTGQSIEKVNVDTERDNYLRAQEA 186

Query: 196 CDWGVVDKVLMSRID 210
           CD+G+VD+V+ SR D
Sbjct: 187 CDYGLVDRVISSRND 201


>gi|308798991|ref|XP_003074276.1| COG0515: Serine/threonine protein kinase (ISS) [Ostreococcus tauri]
 gi|116000447|emb|CAL50127.1| COG0515: Serine/threonine protein kinase (ISS) [Ostreococcus tauri]
          Length = 742

 Score =  262 bits (671), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 113/199 (56%), Positives = 154/199 (77%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMV+EQTNRGER +DIYSRLLKERIVF+ G I+D  ++L  AQLLFLE+ +P   I 
Sbjct: 544 ALVPMVLEQTNRGERVFDIYSRLLKERIVFINGPIDDTASSLAVAQLLFLESASPTAPIW 603

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+NSPGG VTAG+ IYDTMQ++ PPI T C+GQA+SM SLLL+AG KG R +LPN+R++
Sbjct: 604 MYVNSPGGSVTAGLGIYDTMQYVSPPIHTLCVGQASSMASLLLAAGAKGERRSLPNSRVM 663

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           LHQPSGG SGQASDI  HAQ+I+ ++ +L  IY+K+  + Y+++  TL+RD  MS S+A 
Sbjct: 664 LHQPSGGASGQASDIAIHAQEILNVREKLIHIYMKHTNQEYDKIGMTLERDTFMSPSDAL 723

Query: 197 DWGVVDKVLMSRIDIEEKS 215
           ++G++D+V+  R    ++ 
Sbjct: 724 EFGLIDEVIEHRAAATKEE 742


>gi|85859380|ref|YP_461582.1| ATP-dependent Clp protease proteolytic subunit [Syntrophus
           aciditrophicus SB]
 gi|108935920|sp|Q2LTK5|CLPP_SYNAS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|85722471|gb|ABC77414.1| ATP-dependent Clp protease proteolytic subunit [Syntrophus
           aciditrophicus SB]
          Length = 194

 Score =  262 bits (671), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 102/193 (52%), Positives = 154/193 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+PMVV+Q  RGER+YDIYSRLLK+RI+F+   I+D +A LI AQLLFLE+E+P KEI
Sbjct: 1   MNLIPMVVQQDGRGERAYDIYSRLLKDRIIFLGTPIDDEVANLIIAQLLFLESEDPDKEI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             Y+N+PGG +++GMAIYDTM++IKPP++T C+GQAASMG+LLL+AGE+G R ALP++RI
Sbjct: 61  FFYLNTPGGHISSGMAIYDTMRYIKPPVATVCVGQAASMGALLLAAGEQGKRSALPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQP GGF GQA+DI+  A++I+++K  L+ I      +  + ++   +RD+ M++ +A
Sbjct: 121 LIHQPLGGFQGQATDIDIQAREILRLKDELSLILADLTNQPLDRIKTDTERDYYMTSQQA 180

Query: 196 CDWGVVDKVLMSR 208
            ++G++D++++ R
Sbjct: 181 KEYGIIDEIIVKR 193


>gi|229009066|ref|ZP_04166405.1| ATP-dependent Clp protease proteolytic subunit [Bacillus mycoides
           Rock1-4]
 gi|228752236|gb|EEM01925.1| ATP-dependent Clp protease proteolytic subunit [Bacillus mycoides
           Rock1-4]
          Length = 194

 Score =  262 bits (671), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 106/194 (54%), Positives = 138/194 (71%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
            +  +P VVEQT  GERSYDIYSRLLK+RIV +  +I D +A+ + AQLLFLEAE+ +K+
Sbjct: 1   MMNTIPYVVEQTKLGERSYDIYSRLLKDRIVMIGSEINDQVASSVVAQLLFLEAEDAEKD 60

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL AG KG RFALPN+ 
Sbjct: 61  IFLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLAGAKGKRFALPNSE 120

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQP GG  GQA++IE  A+ I+K+K  +N+I     G+  E+V    +RD+ M+A E
Sbjct: 121 IMIHQPLGGVKGQATEIEITAKRILKLKHDINKIISDRTGQPIEKVALDTERDYFMTAEE 180

Query: 195 ACDWGVVDKVLMSR 208
           A  +G+VD V+  +
Sbjct: 181 AKIYGIVDAVIEKK 194


>gi|42525082|ref|NP_970462.1| ATP-dependent Clp protease proteolytic subunit [Bdellovibrio
           bacteriovorus HD100]
 gi|60389658|sp|Q6MH11|CLPP_BDEBA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|39577293|emb|CAE81116.1| ATP-dependent Clp protease proteolytic subunit [Bdellovibrio
           bacteriovorus HD100]
          Length = 212

 Score =  262 bits (671), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 107/206 (51%), Positives = 152/206 (73%), Gaps = 3/206 (1%)

Query: 7   AKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
            +   ++  + L+P V+EQT++GERSYDIYSRLLK+RI+ +   + D +A  I AQ+LFL
Sbjct: 3   PQSQPQETAVALIPYVIEQTSKGERSYDIYSRLLKDRIIILGTAVTDEVANSIIAQMLFL 62

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E +NP+K I LYINSPGG V+AG+AIYD MQF+K  ++T+CMG AASMGSLLL+AG KGM
Sbjct: 63  EVDNPEKPIHLYINSPGGSVSAGLAIYDFMQFVKCDVATYCMGMAASMGSLLLTAGTKGM 122

Query: 127 RFALPNARILLHQP---SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
           R++LPN RI++HQP    GG SGQ +DIE HA+++VK K +L  IY  + G+ Y+ +   
Sbjct: 123 RYSLPNTRIMIHQPLLSGGGLSGQVTDIEIHAKELVKTKEKLTRIYETHTGRDYDTLRAA 182

Query: 184 LDRDHIMSASEACDWGVVDKVLMSRI 209
           ++RD+ M   +A ++G++D V+ SR 
Sbjct: 183 MERDNFMDPYQAKEFGLLDHVVESRK 208


>gi|298707749|emb|CBJ26066.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ectocarpus
           siliculosus]
          Length = 243

 Score =  262 bits (671), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 120/215 (55%), Positives = 162/215 (75%), Gaps = 2/215 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           ++F   +   +  V +  +PMV+E T RGER+YDIYSRLL+ERI+ + G + + M +L+ 
Sbjct: 27  IAFRAYSS--TRRVEMNYLPMVLESTPRGERAYDIYSRLLRERIICMHGPVTEQMTSLVT 84

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE+ENP K I++YINSPGGVVTAG+AIYDTMQ+++P I T CMGQAASMGSLLL+
Sbjct: 85  AQLLFLESENPDKPINMYINSPGGVVTAGLAIYDTMQYVRPEICTICMGQAASMGSLLLT 144

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG   MRF LPNA+++LHQPSGG +G A+DI   A++I+K + RLN+IY ++ G+   E+
Sbjct: 145 AGSPEMRFILPNAKVMLHQPSGGANGMAADIAIMAEEIIKTRARLNDIYAEHTGREVGEI 204

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
           EK +DRD  M+A EA ++GVVDK+L  R    E S
Sbjct: 205 EKVMDRDFYMTAQEAIEFGVVDKILKKRPKEGEGS 239


>gi|196010065|ref|XP_002114897.1| expressed hypothetical protein [Trichoplax adhaerens]
 gi|190582280|gb|EDV22353.1| expressed hypothetical protein [Trichoplax adhaerens]
          Length = 226

 Score =  262 bits (670), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 108/204 (52%), Positives = 158/204 (77%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
                LVP+V+E+T RGE++YDIYSRLLK+RIV V G + D +A+L+ AQLLFL+AE+ +
Sbjct: 22  PRISPLVPIVIEKTGRGEQAYDIYSRLLKDRIVCVMGPVTDDLASLVVAQLLFLQAESSK 81

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
             I +YINSPGG VT+G+ IYDTMQ+++PPI T+C+GQAASMGSLLL+AG+ G R +LPN
Sbjct: 82  LPIHMYINSPGGSVTSGLGIYDTMQYVEPPIYTWCVGQAASMGSLLLAAGDNGKRHSLPN 141

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           +RI++HQPSG   GQA+DI   A++I+K+K+ +N++Y K+ G++ E +E+ ++RD  M  
Sbjct: 142 SRIMIHQPSGQAFGQATDIAIQAEEIIKLKKLINDLYKKHTGQSIENIEEAMERDKYMFP 201

Query: 193 SEACDWGVVDKVLMSRIDIEEKSK 216
           +EA  +G++DKVL     I+E ++
Sbjct: 202 NEAAAFGLIDKVLSRPQAIKEMTE 225


>gi|266623582|ref|ZP_06116517.1| Clp protease [Clostridium hathewayi DSM 13479]
 gi|288864626|gb|EFC96924.1| Clp protease [Clostridium hathewayi DSM 13479]
          Length = 195

 Score =  262 bits (670), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 103/194 (53%), Positives = 146/194 (75%), Gaps = 1/194 (0%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+E T++GERSYD++SRLLK+RI+F+  ++ D  A L  AQ+LFLEAE+P K+I
Sbjct: 1   MSLVPNVIETTSKGERSYDLFSRLLKDRIIFLGEEVNDETARLAVAQMLFLEAEDPSKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S YINSPGG +TAG+AIYDTM++I+  +ST C+G AAS G+ LL+ G KG RFALPNA I
Sbjct: 61  SFYINSPGGSITAGLAIYDTMRYIRCDVSTICIGLAASFGAFLLAGGTKGKRFALPNAEI 120

Query: 136 LLHQPSG-GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           ++HQP+     G+A+DI+ +++ + + KRRLN I  +N G+T EE+ +  +RDH MSA E
Sbjct: 121 MIHQPAVEKIGGKATDIQIYSEKLQRDKRRLNRILAENTGRTEEEIWRDTERDHFMSAEE 180

Query: 195 ACDWGVVDKVLMSR 208
           A  +G++D V+  R
Sbjct: 181 AKAYGIIDTVMQKR 194


>gi|90962143|ref|YP_536059.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           salivarius UCC118]
 gi|227891166|ref|ZP_04008971.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           salivarius ATCC 11741]
 gi|301301246|ref|ZP_07207401.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|116243146|sp|Q1WTA8|CLPP_LACS1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|90821337|gb|ABD99976.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           salivarius UCC118]
 gi|227867040|gb|EEJ74461.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           salivarius ATCC 11741]
 gi|300214827|gb|ADJ79243.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           [Lactobacillus salivarius CECT 5713]
 gi|300851122|gb|EFK78851.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 197

 Score =  262 bits (670), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 97/197 (49%), Positives = 147/197 (74%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQ+++GER+YDIYSRLLK+RI+ V+G++ D MA  I AQLLFL+A++ +K+I
Sbjct: 1   MNLVPTVIEQSSQGERAYDIYSRLLKDRIIMVSGEVNDDMANAIIAQLLFLDAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG V+AG+AIYDTM F+   + T  MG AASM S+L +AG KG RFALPN+ I
Sbjct: 61  YMYINSPGGSVSAGLAIYDTMNFVNADVQTIVMGMAASMASVLATAGTKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQ+++I+  A+ I+K ++ +N+I     G+  E + K  +RD+ M+A +A
Sbjct: 121 MIHQPLGGAQGQSTEIQIAAEHILKTRKLINQILADGSGQDIETINKDTERDNFMTAQQA 180

Query: 196 CDWGVVDKVLMSRIDIE 212
            D+G++D ++ ++  I+
Sbjct: 181 VDYGLIDGIMKNKKKIK 197


>gi|226944447|ref|YP_002799520.1| ATP-dependent Clp protease proteolytic subunit [Azotobacter
           vinelandii DJ]
 gi|226719374|gb|ACO78545.1| Peptidase S14, ClpP [Azotobacter vinelandii DJ]
          Length = 211

 Score =  262 bits (670), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 119/192 (61%), Positives = 155/192 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+EQ+ RGER+YDIYSRLLKER++F+ GQ+ED+MA LI AQLLFLEAENP K+I 
Sbjct: 16  GLVPMVIEQSARGERAYDIYSRLLKERVIFMVGQVEDYMANLIVAQLLFLEAENPDKDIH 75

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+LLL+ G  G R+ LP++R++
Sbjct: 76  LYINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGALLLAGGAAGKRYCLPHSRMM 135

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GGF GQASDIE HA++I+ I+ RLN+I   + G+  + + +  DRD+ MS  EA 
Sbjct: 136 IHQPLGGFQGQASDIEIHAREILTIRERLNKILAHHTGQPIDVIARDTDRDNFMSGEEAV 195

Query: 197 DWGVVDKVLMSR 208
            + ++D+VL+ R
Sbjct: 196 KYRLIDQVLVHR 207


>gi|126696140|ref|YP_001091026.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus str. MIT 9301]
 gi|126543183|gb|ABO17425.1| Clp protease subunit [Prochlorococcus marinus str. MIT 9301]
          Length = 195

 Score =  262 bits (669), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 96/192 (50%), Positives = 137/192 (71%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+E++   ER +DIYSRLL+ERI+F+  Q+    A  I AQLLFLEAE+P+K+I +
Sbjct: 1   MIPLVLEESGGSERVFDIYSRLLRERIIFLGEQVTSETANRIVAQLLFLEAEDPEKDIYM 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I+DTMQ +KP I T C+G AASMG+ LL+AG +G R +L ++RI++
Sbjct: 61  YINSPGGSVYDGLGIFDTMQHVKPDIHTVCVGLAASMGAFLLAAGTQGKRSSLRHSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDI   A +I+ +K RLN    +  GK Y+ +++  DRD  MS +EA +
Sbjct: 121 HQPLGGARGQASDIRIQADEILFLKERLNTELSERTGKDYDTIKEDTDRDFYMSPNEAVE 180

Query: 198 WGVVDKVLMSRI 209
           +G++D VL  + 
Sbjct: 181 YGLIDLVLDKKP 192


>gi|77128443|ref|YP_113048.2| ATP-dependent Clp protease proteolytic subunit [Methylococcus
           capsulatus str. Bath]
 gi|83301431|sp|Q60BE8|CLPP2_METCA RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|66270664|gb|AAU93284.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylococcus
           capsulatus str. Bath]
          Length = 195

 Score =  262 bits (669), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 113/191 (59%), Positives = 155/191 (81%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P+V+EQ+ RGER++DIYSRLLKER++F+ GQ+ED+MA L+ AQLLFLE+ENP K+I LY
Sbjct: 1   MPIVIEQSARGERAFDIYSRLLKERVIFLVGQVEDYMANLVIAQLLFLESENPDKDIHLY 60

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG+VTAG+AIYDTMQFIKP +ST C+GQAASMG+LLL+ G  G R+ LP++RI++H
Sbjct: 61  INSPGGLVTAGLAIYDTMQFIKPDVSTLCVGQAASMGALLLAGGAAGKRYCLPHSRIMIH 120

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GGF GQASDI+ HA++I+ ++ RLN+I   + G+  E+++   DRD+ M   +A  +
Sbjct: 121 QPLGGFQGQASDIDIHAREILAVRDRLNKILAHHTGQPIEKIQIDTDRDNFMGGDDAVSY 180

Query: 199 GVVDKVLMSRI 209
           G++DKVL  R 
Sbjct: 181 GLIDKVLTHRT 191


>gi|212546731|ref|XP_002153519.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Penicillium
           marneffei ATCC 18224]
 gi|210065039|gb|EEA19134.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Penicillium
           marneffei ATCC 18224]
          Length = 257

 Score =  262 bits (669), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 105/203 (51%), Positives = 149/203 (73%), Gaps = 4/203 (1%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
              P V E    G  +YDI+SRLLKERI+ + G++++  +  I AQLLFLEA+NP+K I 
Sbjct: 51  TPTPFVTETVGGGWHTYDIFSRLLKERIICLNGEVDETTSAAIVAQLLFLEADNPEKAIH 110

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAG+AIYDTM +I+ P+ T C+GQAASMGSLLL  G  G R+ LP++ I+
Sbjct: 111 LYINSPGGSVTAGLAIYDTMTYIQSPVHTICVGQAASMGSLLLCGGHAGKRYCLPHSSIM 170

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKN-CGK---TYEEVEKTLDRDHIMSA 192
           +HQPSGG+ GQASDI  HA++I++++ +LN+IY ++  GK   + +E+EK ++RD+ M A
Sbjct: 171 IHQPSGGYFGQASDIAIHAKEILRVRTQLNQIYQRHLTGKKQLSLDEIEKLMERDYFMGA 230

Query: 193 SEACDWGVVDKVLMSRIDIEEKS 215
            EA + G+VD++L  R+  E +S
Sbjct: 231 QEALEMGIVDEILDRRMKPESES 253


>gi|167750809|ref|ZP_02422936.1| hypothetical protein EUBSIR_01791 [Eubacterium siraeum DSM 15702]
 gi|167656244|gb|EDS00374.1| hypothetical protein EUBSIR_01791 [Eubacterium siraeum DSM 15702]
 gi|291530696|emb|CBK96281.1| ATP-dependent Clp protease proteolytic subunit ClpP [Eubacterium
           siraeum 70/3]
 gi|291557795|emb|CBL34912.1| ATP-dependent Clp protease proteolytic subunit ClpP [Eubacterium
           siraeum V10Sc8a]
          Length = 195

 Score =  262 bits (669), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 108/195 (55%), Positives = 148/195 (75%), Gaps = 2/195 (1%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT RGER+YDI+SRLL +RI+ +  ++ +  A L+ AQLLFLE ++P K+I
Sbjct: 1   MSLVPTVIEQTGRGERAYDIFSRLLNDRIIMLNEEVNNVTAGLVVAQLLFLEGQDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG ++AGMAIYDTM +IK  +ST C+G AASMG+ LLS+G KG RF LPN+ +
Sbjct: 61  SLYINSPGGSISAGMAIYDTMNYIKCDVSTICVGMAASMGAFLLSSGAKGKRFCLPNSEV 120

Query: 136 LLHQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           ++HQP  SGG SGQ +DI  HA+ + K +  L +I  +NCGK+YE++ K  +RD+ +SA 
Sbjct: 121 MIHQPLISGGLSGQQTDITIHAKYLEKTRETLEKIMAENCGKSYEQLHKDCERDNFLSAE 180

Query: 194 EACDWGVVDKVLMSR 208
           EAC +G+VDKV+  R
Sbjct: 181 EACAYGLVDKVIAKR 195


>gi|32490904|ref|NP_871158.1| hypothetical protein WGLp155 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|31340011|sp|Q8D346|CLPP_WIGBR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|25166110|dbj|BAC24301.1| clpP [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 194

 Score =  262 bits (669), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 115/194 (59%), Positives = 156/194 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P VVE+  RGERSYDI+SRLLKERI+FVTG+IED+MA LI AQ++FLE+E+P+K+I
Sbjct: 1   MNLIPTVVEKNARGERSYDIFSRLLKERIIFVTGKIEDYMANLIIAQMIFLESEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVVT+GM+IYDTMQFIK  +ST C+GQ++SM +L+L++GEKG RF+LPNARI
Sbjct: 61  FLYINSPGGVVTSGMSIYDTMQFIKCEVSTLCIGQSSSMAALILASGEKGKRFSLPNARI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+DI  H  +I+KIK+ + E+  K+ G++ E + K  +RD   S SEA
Sbjct: 121 MIHQPLGGSQGQATDIAIHTTEILKIKKCMIELLSKHTGQSAEIISKDTERDRFFSGSEA 180

Query: 196 CDWGVVDKVLMSRI 209
             +G++DKV+  R 
Sbjct: 181 VIYGLIDKVITCRK 194


>gi|58337015|ref|YP_193600.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           acidophilus NCFM]
 gi|227903577|ref|ZP_04021382.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           acidophilus ATCC 4796]
 gi|67460152|sp|Q5FL55|CLPP_LACAC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|58254332|gb|AAV42569.1| ATP-dependent Clp protease P [Lactobacillus acidophilus NCFM]
 gi|227868464|gb|EEJ75885.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           acidophilus ATCC 4796]
          Length = 195

 Score =  262 bits (669), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 102/192 (53%), Positives = 151/192 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQT RGER+YDIYSRLLK+RI+ ++G+I D MA  I AQLLFL+A++  K+ISL
Sbjct: 2   LVPTVIEQTARGERAYDIYSRLLKDRIIMLSGEINDQMANSIIAQLLFLDAQDNTKDISL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+T+G+AI DTM FIK  +ST  +G AASM S+LL++G KG RFALPN+ +L+
Sbjct: 62  YINSPGGVITSGLAIMDTMNFIKSDVSTIAIGMAASMASILLTSGTKGKRFALPNSTVLI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQ +DI+  A +I+K ++++NEI  +  G+  E+++K  +RD+ ++A EA +
Sbjct: 122 HQPLGGAQGQQTDIQIAANEILKSRKKINEILHETTGQPLEKIQKDTERDNYLTAEEAKE 181

Query: 198 WGVVDKVLMSRI 209
           +G++D++++++ 
Sbjct: 182 YGLIDEIMVNKK 193


>gi|254294162|ref|YP_003060185.1| endopeptidase Clp [Hirschia baltica ATCC 49814]
 gi|254042693|gb|ACT59488.1| Endopeptidase Clp [Hirschia baltica ATCC 49814]
          Length = 206

 Score =  261 bits (668), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 133/200 (66%), Positives = 171/200 (85%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           D  +  + LVPMVVEQ++RGER+YDI+SRLLKERI+FVTG IED MATLI AQLLFLE+E
Sbjct: 3   DPIETAMNLVPMVVEQSSRGERAYDIFSRLLKERIIFVTGPIEDGMATLITAQLLFLESE 62

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           NP+KEIS+YINSPGGVV++G+AIYDTMQ+I  P+ST C+G AASMGSLLL+AGEK MRFA
Sbjct: 63  NPKKEISMYINSPGGVVSSGLAIYDTMQYISAPVSTACIGMAASMGSLLLAAGEKDMRFA 122

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
            PNARI++HQPSGG+ G ASDIERHA++I++IKR LN IYV + G++YE +E+ LDRD  
Sbjct: 123 TPNARIMVHQPSGGYRGVASDIERHAEEILEIKRNLNNIYVNHTGQSYEAIEQKLDRDSF 182

Query: 190 MSASEACDWGVVDKVLMSRI 209
           M++++A ++G++D+V   R 
Sbjct: 183 MTSAQAVEFGIIDRVFEKRA 202


>gi|146329429|ref|YP_001209154.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dichelobacter
           nodosus VCS1703A]
 gi|166201820|sp|A5EWF5|CLPP_DICNV RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|146232899|gb|ABQ13877.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dichelobacter
           nodosus VCS1703A]
          Length = 203

 Score =  261 bits (668), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 115/194 (59%), Positives = 153/194 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            +PMVVEQT RGER++DIYSRLLKER+VF+ G++ D  A L+ AQLLFLEAENP ++I  
Sbjct: 8   PIPMVVEQTGRGERAFDIYSRLLKERVVFLVGEVNDASANLVVAQLLFLEAENPDQDIHF 67

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGM+IYDTMQFIKP +ST  +GQAASMG++LL+AG  G R+ALPN+R+++
Sbjct: 68  YINSPGGSVTAGMSIYDTMQFIKPDVSTMVLGQAASMGAVLLAAGAAGKRYALPNSRVMI 127

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQASDI+ HA++I+ I+ RLN+I  K+ G+  E + +  +RD+ MSA  A +
Sbjct: 128 HQPLGGFRGQASDIDIHAREILFIRERLNQILAKHSGQDLETISRDTERDNFMSAERAQE 187

Query: 198 WGVVDKVLMSRIDI 211
           +G+VD +L  R  +
Sbjct: 188 YGLVDAILTHRESV 201


>gi|220906939|ref|YP_002482250.1| ATP-dependent Clp protease proteolytic subunit [Cyanothece sp. PCC
           7425]
 gi|219863550|gb|ACL43889.1| Endopeptidase Clp [Cyanothece sp. PCC 7425]
          Length = 198

 Score =  261 bits (668), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 101/193 (52%), Positives = 141/193 (73%), Gaps = 2/193 (1%)

Query: 19  VPMVVEQTNRGE--RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +       +  DIY+RL +ERI+F+  +++D +A  I A +L+L++E+P K+I 
Sbjct: 5   VPKVPYRMPGEPYTQWIDIYNRLYRERIIFLGKEVDDEIANQIVAVMLYLDSEDPGKDIV 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGMAIYDTMQ IK  + T C+G AASMGS LL+AG  G R ALP++RI+
Sbjct: 65  LYINSPGGSVTAGMAIYDTMQHIKSDVVTICVGLAASMGSFLLTAGAPGKRLALPHSRIM 124

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  GQASDIE  A++I++I+ +LN+IY    G+  E++EK +DRD+ MSA EA 
Sbjct: 125 IHQPSGGTRGQASDIEIEAREIIRIRHQLNQIYADRTGQPLEKIEKDIDRDYFMSAQEAK 184

Query: 197 DWGVVDKVLMSRI 209
           D+G++D+V+  R 
Sbjct: 185 DYGLIDRVIEDRT 197


>gi|227877204|ref|ZP_03995278.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           crispatus JV-V01]
 gi|227893204|ref|ZP_04011009.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           ultunensis DSM 16047]
 gi|256842758|ref|ZP_05548246.1| Clp protease [Lactobacillus crispatus 125-2-CHN]
 gi|256848932|ref|ZP_05554366.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           crispatus MV-1A-US]
 gi|262045725|ref|ZP_06018689.1| Clp protease [Lactobacillus crispatus MV-3A-US]
 gi|293380203|ref|ZP_06626285.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           crispatus 214-1]
 gi|295692558|ref|YP_003601168.1| ATP-dependent clp protease proteolytic subunit [Lactobacillus
           crispatus ST1]
 gi|312977722|ref|ZP_07789469.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           crispatus CTV-05]
 gi|227863258|gb|EEJ70703.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           crispatus JV-V01]
 gi|227864973|gb|EEJ72394.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           ultunensis DSM 16047]
 gi|256614178|gb|EEU19379.1| Clp protease [Lactobacillus crispatus 125-2-CHN]
 gi|256714471|gb|EEU29458.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           crispatus MV-1A-US]
 gi|260573684|gb|EEX30240.1| Clp protease [Lactobacillus crispatus MV-3A-US]
 gi|290923247|gb|EFE00168.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           crispatus 214-1]
 gi|295030664|emb|CBL50143.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           crispatus ST1]
 gi|310895461|gb|EFQ44528.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           crispatus CTV-05]
 gi|323466927|gb|ADX70614.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           helveticus H10]
          Length = 194

 Score =  261 bits (668), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 102/193 (52%), Positives = 151/193 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQT RGER+YDIYSRLLK+RI+ ++G+I D MA  I AQLLFL+A++  K+ISL
Sbjct: 2   LVPTVIEQTARGERAYDIYSRLLKDRIIMLSGEINDQMANSIIAQLLFLDAQDNTKDISL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+T+G+AI DTM FIK  +ST  +G AASM S+LL++G KG RFALPN+ +L+
Sbjct: 62  YINSPGGVITSGLAIMDTMNFIKSDVSTIAIGMAASMASILLTSGTKGKRFALPNSTVLI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQ +DI+  A +I+K ++++NEI  +  G+  E+++K  +RD+ ++A EA +
Sbjct: 122 HQPLGGAQGQQTDIQIAANEILKSRKKINEILHETTGQPLEKIQKDTERDNYLTAEEAKE 181

Query: 198 WGVVDKVLMSRID 210
           +G++D++++++  
Sbjct: 182 YGLIDEIMVNKKK 194


>gi|257063882|ref|YP_003143554.1| protease subunit of ATP-dependent protease [Slackia
           heliotrinireducens DSM 20476]
 gi|256791535|gb|ACV22205.1| protease subunit of ATP-dependent protease [Slackia
           heliotrinireducens DSM 20476]
          Length = 206

 Score =  261 bits (668), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 98/192 (51%), Positives = 138/192 (71%), Gaps = 2/192 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+EQ+ RGER+YDIYSRLL +RI+F+   I+D++A L+ AQLL LE+ +P+K+ISLY
Sbjct: 9   IPYVIEQSPRGERTYDIYSRLLNDRIIFLGDAIDDNVANLVVAQLLHLESSDPEKDISLY 68

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG V+AGMAIYD MQFI+  +ST C+G AASM S+L +AG  G RF  PN++I++H
Sbjct: 69  INSPGGSVSAGMAIYDAMQFIRCDVSTVCIGMAASMASVLTAAGTPGKRFITPNSQIMIH 128

Query: 139 QPSGGF--SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           QP GG     Q +D E  A ++ K + RL  I   + G+T E +    +RDH ++A EA 
Sbjct: 129 QPMGGAESRTQQTDFEIAATEMRKTRERLEGILAAHTGQTIETIHADSERDHWLTAEEAK 188

Query: 197 DWGVVDKVLMSR 208
            +G+VD+++ SR
Sbjct: 189 AYGLVDEIITSR 200


>gi|209964556|ref|YP_002297471.1| ATP-dependent Clp protease, proteolytic subunit ClpP, putative
           [Rhodospirillum centenum SW]
 gi|209958022|gb|ACI98658.1| ATP-dependent Clp protease, proteolytic subunit ClpP, putative
           [Rhodospirillum centenum SW]
          Length = 209

 Score =  261 bits (668), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 120/205 (58%), Positives = 163/205 (79%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E     LVPMVVEQTNRGER+YDIYSRLLKERI+F+ G + D +A+L+CAQ LFLEAENP
Sbjct: 3   EPQMNALVPMVVEQTNRGERAYDIYSRLLKERIIFLVGGVNDAVASLVCAQFLFLEAENP 62

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            KEIS YINSPGG VT+G+AIYDTMQ+I+ P++T C+GQAASMG+LLL+ G  G R++LP
Sbjct: 63  NKEISFYINSPGGYVTSGLAIYDTMQYIRCPVATICVGQAASMGALLLAGGGAGRRYSLP 122

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+RI++HQPSGG  GQA+DIE  AQ+I+++++RLNEI+ ++ G+  + +EK ++RD  MS
Sbjct: 123 NSRIMIHQPSGGAQGQAADIEIQAQEILRMRQRLNEIFQRHTGQNLDVIEKAVERDKFMS 182

Query: 192 ASEACDWGVVDKVLMSRIDIEEKSK 216
             EA  +G++D+V  +R +    S+
Sbjct: 183 PEEAKAFGLIDEVFSNRPNSAPNSQ 207


>gi|269837422|ref|YP_003319650.1| Endopeptidase Clp [Sphaerobacter thermophilus DSM 20745]
 gi|269786685|gb|ACZ38828.1| Endopeptidase Clp [Sphaerobacter thermophilus DSM 20745]
          Length = 209

 Score =  261 bits (668), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 102/195 (52%), Positives = 145/195 (74%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
                 L+PMVVE TNRGER+YDIYSRLL++RI+F+   ++D +A  I AQ++FLE ENP
Sbjct: 6   RARPEALIPMVVETTNRGERAYDIYSRLLRDRIIFLGTPVDDQIANAIIAQMIFLEYENP 65

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +++I LYINSPGG+V AG+AIYDTMQ I+  ++T+C+G  ASM ++LL+AG KG RFALP
Sbjct: 66  EQDIKLYINSPGGLVYAGLAIYDTMQMIRCDVATYCIGLGASMAAVLLAAGTKGKRFALP 125

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+RIL+HQ S GF G   DIE  A++ + +  ++ EI   + G+++E V++  +RD+ MS
Sbjct: 126 NSRILIHQGSSGFRGSVPDIEIQARETINLTTKMTEIMAYHTGQSFERVKRDTERDYFMS 185

Query: 192 ASEACDWGVVDKVLM 206
           A EA ++G+VD VL 
Sbjct: 186 AQEAKEYGIVDHVLE 200


>gi|171915864|ref|ZP_02931334.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Verrucomicrobium spinosum DSM 4136]
          Length = 237

 Score =  261 bits (668), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 107/210 (50%), Positives = 153/210 (72%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS         +     ++P V+E   R ER+YDIYSRLLK+RI+F+   I+D +A ++ 
Sbjct: 1   MSTIANFPTMIQRPSNYIIPTVIEAEGRMERAYDIYSRLLKDRIIFIGTPIDDQVANIVI 60

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFL+ ++P+K+I++YINSPGG VTAG+AIYDTMQF+   ++T+C+G AASMG++LL+
Sbjct: 61  AQLLFLQMQDPKKDINIYINSPGGSVTAGLAIYDTMQFVTCDVNTYCIGIAASMGAVLLT 120

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG R+ALPN+ I++HQ SGG  G ASD+ER  + + ++KRRLN+I   + GKT E V
Sbjct: 121 AGTKGKRYALPNSHIMIHQVSGGAQGTASDVERTVEFMYRLKRRLNKIISHHTGKTVEAV 180

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           E+  DRD+ MS  EA  +G+VDKVL ++ +
Sbjct: 181 ERDADRDYYMSGEEAAAYGIVDKVLDNKKE 210


>gi|295425564|ref|ZP_06818253.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           amylolyticus DSM 11664]
 gi|295064740|gb|EFG55659.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           amylolyticus DSM 11664]
          Length = 195

 Score =  261 bits (668), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 100/193 (51%), Positives = 150/193 (77%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQT RGER+YDIYSRLLK+RI+ + G+I D MA  I AQLLFL+A++  K+ISL
Sbjct: 2   LVPTVIEQTARGERAYDIYSRLLKDRIIMLHGEINDQMANSIIAQLLFLDAQDNTKDISL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+T+G+AI DTM FIK  +ST  +G AASM S+LL++G KG RFALPN+ +L+
Sbjct: 62  YINSPGGVITSGLAIMDTMNFIKSDVSTIAIGLAASMASILLTSGTKGKRFALPNSTVLI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQ +DI+  A +I+K ++++N+I  +  G+  ++++K  +RD+ ++A EA +
Sbjct: 122 HQPLGGAQGQQTDIQIAANEILKSRKKINKILHETTGQPLDKIQKDTERDNYLTAEEAKE 181

Query: 198 WGVVDKVLMSRID 210
           +G++D++++++  
Sbjct: 182 YGLIDEIMVNKKK 194


>gi|113475006|ref|YP_721067.1| ATP-dependent Clp protease proteolytic subunit [Trichodesmium
           erythraeum IMS101]
 gi|110166054|gb|ABG50594.1| ATP-dependent Clp protease proteolytic subunit ClpP [Trichodesmium
           erythraeum IMS101]
          Length = 196

 Score =  261 bits (668), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 96/196 (48%), Positives = 140/196 (71%), Gaps = 1/196 (0%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
            + +  VP  +  +   ER  DIY+RL +ERI+F+  ++ D +A  I A +L+L++++P 
Sbjct: 2   PIGIPSVPYRLPGSQY-ERWIDIYTRLGQERIIFLGQEVTDGLANRIVAYMLYLDSDDPN 60

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K I LYINSPGG VTAG+AIYDTMQ+IK  + T C+G AASMGS LL+AG KG R ALPN
Sbjct: 61  KPIYLYINSPGGSVTAGLAIYDTMQYIKADVITICLGLAASMGSFLLAAGTKGKRLALPN 120

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           +RI++HQP GG  GQA+DIE  A +I++++  LN +  +  G++ E++EK  DRD+ MSA
Sbjct: 121 SRIMIHQPMGGTRGQATDIEIEANEILRVRSELNNMLAERTGQSLEKIEKDTDRDYYMSA 180

Query: 193 SEACDWGVVDKVLMSR 208
            EA ++G++D+V+  R
Sbjct: 181 EEAKEYGLIDQVIEER 196


>gi|161507214|ref|YP_001577168.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           helveticus DPC 4571]
 gi|172048207|sp|A8YUD9|CLPP_LACH4 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|160348203|gb|ABX26877.1| ATP-dependent Clp protease P [Lactobacillus helveticus DPC 4571]
          Length = 194

 Score =  261 bits (667), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 102/193 (52%), Positives = 150/193 (77%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQT RGER+YDIYSRLLK+RI+ ++G+I D MA  I AQLLFL+A++  K+ISL
Sbjct: 2   LVPTVIEQTARGERAYDIYSRLLKDRIIMLSGEINDQMANSIIAQLLFLDAQDNTKDISL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+T+G+AI DTM FIK  +ST  +G AASM S+LL++G KG RFALPN+ +L+
Sbjct: 62  YINSPGGVITSGLAIMDTMNFIKSDVSTIAIGMAASMASILLTSGTKGKRFALPNSTVLI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQ +DI+  A +I+K ++++NEI  +  G+  E+++K  +RD+ ++A EA +
Sbjct: 122 HQPLGGAQGQQTDIQIAANEILKSRKKINEILHETTGQPLEKIQKDTERDNYLTAEEAKE 181

Query: 198 WGVVDKVLMSRID 210
           +G++D+++ ++  
Sbjct: 182 YGLIDEIMANKKK 194


>gi|32476643|ref|NP_869637.1| ATP-dependent Clp protease proteolytic subunit [Rhodopirellula
           baltica SH 1]
 gi|67460512|sp|Q7UK66|CLPP2_RHOBA RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|32447189|emb|CAD77015.1| ATP-dependent clp protease proteolytic subunit [Rhodopirellula
           baltica SH 1]
 gi|327540248|gb|EGF26837.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Rhodopirellula baltica WH47]
          Length = 195

 Score =  261 bits (667), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 105/195 (53%), Positives = 153/195 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++P VVE   R ER+YDIYSRLLK+RI+F+  Q++D ++  + AQ+LFL+A++P+K+I
Sbjct: 1   MPVIPYVVESNGREERTYDIYSRLLKDRIIFLGQQVDDQISNALVAQMLFLQADDPKKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG +TAGMAIYDTMQF+   ++T+C+GQAASMG++LL+AG KG RFALPNARI
Sbjct: 61  HMYINSPGGSITAGMAIYDTMQFVSCDVATYCIGQAASMGAVLLTAGAKGKRFALPNARI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP  G  G A ++E H  ++ +IK+R+NEI +++ G + E++E+  DRD  MSA EA
Sbjct: 121 MIHQPLAGMQGTAREVEIHVAELRRIKQRMNEIMIEHTGHSLEKIEEDTDRDRFMSADEA 180

Query: 196 CDWGVVDKVLMSRID 210
           C +G++DKV+ S  D
Sbjct: 181 CSYGLIDKVVKSVDD 195


>gi|42518794|ref|NP_964724.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           johnsonii NCC 533]
 gi|116629940|ref|YP_815112.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           gasseri ATCC 33323]
 gi|227889633|ref|ZP_04007438.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           johnsonii ATCC 33200]
 gi|238853240|ref|ZP_04643625.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           gasseri 202-4]
 gi|268319810|ref|YP_003293466.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           johnsonii FI9785]
 gi|282851462|ref|ZP_06260827.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           gasseri 224-1]
 gi|300361300|ref|ZP_07057477.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           gasseri JV-V03]
 gi|311110427|ref|ZP_07711824.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           gasseri MV-22]
 gi|67460349|sp|Q74K84|CLPP_LACJO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|122273122|sp|Q042E8|CLPP_LACGA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|41583080|gb|AAS08690.1| ATP-dependent clp protease proteolytic subunit [Lactobacillus
           johnsonii NCC 533]
 gi|116095522|gb|ABJ60674.1| ATP-dependent Clp protease proteolytic subunit ClpP [Lactobacillus
           gasseri ATCC 33323]
 gi|227849776|gb|EEJ59862.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           johnsonii ATCC 33200]
 gi|238834124|gb|EEQ26376.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           gasseri 202-4]
 gi|262398185|emb|CAX67199.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           johnsonii FI9785]
 gi|282557430|gb|EFB63027.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           gasseri 224-1]
 gi|300353919|gb|EFJ69790.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           gasseri JV-V03]
 gi|311065581|gb|EFQ45921.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           gasseri MV-22]
 gi|329667657|gb|AEB93605.1| ATP-dependent clp protease proteolytic subunit [Lactobacillus
           johnsonii DPC 6026]
          Length = 195

 Score =  261 bits (667), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 104/193 (53%), Positives = 150/193 (77%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQT RGER+YDIYSRLLK+RI+ ++G+I D MA  I AQLLFL+A++  K+ISL
Sbjct: 2   LVPTVIEQTARGERAYDIYSRLLKDRIIMLSGEINDQMANSIIAQLLFLDAQDNTKDISL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+T+G+AI DTM FIK  +ST  +G AASM S+LL++G KG RFALPN+ +L+
Sbjct: 62  YINSPGGVITSGLAIMDTMNFIKSDVSTIAIGMAASMASILLTSGTKGKRFALPNSTVLI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQ +DI+  A +I+K +++LN+I  +  G+  +++ K  +RD+ +SA EA D
Sbjct: 122 HQPLGGAQGQQTDIQIAANEILKSRKKLNQILHETTGQPLDKILKDTERDNYLSAEEAKD 181

Query: 198 WGVVDKVLMSRID 210
           +G++D++L+++  
Sbjct: 182 YGLIDEILVNQKK 194


>gi|121705182|ref|XP_001270854.1| Clp protease, putative [Aspergillus clavatus NRRL 1]
 gi|119399000|gb|EAW09428.1| Clp protease, putative [Aspergillus clavatus NRRL 1]
          Length = 256

 Score =  260 bits (666), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 106/198 (53%), Positives = 147/198 (74%), Gaps = 4/198 (2%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
              P V E    G  +YDI+SRLLKERI+ + G++++ M+  I AQLLFLEA+NPQK I 
Sbjct: 44  TPTPFVAETVGGGWHTYDIFSRLLKERIICLNGEVDESMSASIVAQLLFLEADNPQKPIH 103

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAG+AIYDTM +I  P+ST C+GQAASMGSLLL  G  G R+ LP++ I+
Sbjct: 104 LYINSPGGSVTAGLAIYDTMTYITSPVSTICVGQAASMGSLLLCGGHPGKRYCLPHSSIM 163

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKN-CG---KTYEEVEKTLDRDHIMSA 192
           +HQPSGG+ GQASDI  HA++I++++ +LN+IY ++  G    + EE+EK ++RD+ M A
Sbjct: 164 IHQPSGGYFGQASDIAIHAKEILRVRSQLNKIYKRHLTGNKELSLEEIEKLMERDYFMGA 223

Query: 193 SEACDWGVVDKVLMSRID 210
           +EA + G+VD++L  R+ 
Sbjct: 224 NEALEMGIVDEILDRRVK 241


>gi|255994401|ref|ZP_05427536.1| Clp protease [Eubacterium saphenum ATCC 49989]
 gi|255993114|gb|EEU03203.1| Clp protease [Eubacterium saphenum ATCC 49989]
          Length = 196

 Score =  260 bits (666), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 109/195 (55%), Positives = 148/195 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L P+V+E+   GERS+DIYSRLL++RI+F+   IE +MA+ I AQLLFLEAE+  K+I
Sbjct: 1   MALTPIVIEKDGSGERSFDIYSRLLRDRIIFIGEPIESNMASSIIAQLLFLEAEDSSKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG VT+G+AIYDTMQFIKP + T C+G AASM ++LL AGEKG RFALPN+ I
Sbjct: 61  CIYINSPGGDVTSGLAIYDTMQFIKPQVQTVCVGMAASMAAVLLLAGEKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG SGQAS+I+  A+ I+K + +LN +  K+  K    +E+  DRD  M+A+EA
Sbjct: 121 MIHQPMGGASGQASEIKIAAEHIIKTRDKLNRLISKHTTKNLSTIEEDTDRDKYMTANEA 180

Query: 196 CDWGVVDKVLMSRID 210
            D+G++D VL SR +
Sbjct: 181 LDYGIIDSVLKSRDE 195


>gi|288574917|ref|ZP_06393274.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570658|gb|EFC92215.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 192

 Score =  260 bits (666), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 99/190 (52%), Positives = 138/190 (72%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+EQT RGERSYDIYSRLLK+RIVF+  +I D +A  + AQ+LFLE+ENP K+I  Y
Sbjct: 3   IPYVIEQTGRGERSYDIYSRLLKDRIVFIGDEINDGLANSVIAQMLFLESENPDKDIYFY 62

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TAG+AIYDTMQ++K  IST  +G AASM ++LL+AG  G R +LP +R+++H
Sbjct: 63  INSPGGSTTAGLAIYDTMQYVKCDISTIVVGIAASMAAVLLTAGTAGKRVSLPRSRVMIH 122

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  G+ASD+    ++I+  K  LN I   + G+ ++++ +  ++D  MSA EA  +
Sbjct: 123 QPWGGARGKASDMAIQVKEILHTKETLNRILADHSGQDFDKICEDTEKDFYMSADEAMAY 182

Query: 199 GVVDKVLMSR 208
           G+VDKV+  R
Sbjct: 183 GLVDKVIDRR 192


>gi|92114168|ref|YP_574096.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Chromohalobacter salexigens DSM 3043]
 gi|116243130|sp|Q1QVW1|CLPP_CHRSD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|91797258|gb|ABE59397.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Chromohalobacter salexigens DSM 3043]
          Length = 206

 Score =  260 bits (666), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 115/193 (59%), Positives = 156/193 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMVVEQ  RGER+YDIYSRLLKER++F+ G +ED+MA L+ AQ+LFLE+ENP K+I 
Sbjct: 12  GLVPMVVEQNARGERAYDIYSRLLKERVIFLIGPVEDYMANLVVAQMLFLESENPDKDIH 71

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQAASMG+LLL+ G  G R+ LP++R++
Sbjct: 72  LYINSPGGSVTAGMSIYDTMQFIKPDVSTVCVGQAASMGALLLAGGAAGKRYCLPHSRMM 131

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG+ GQA+DIE H ++I+ I+++LNEI  K+ G+  E V +  DRD+ M+ ++A 
Sbjct: 132 IHQPLGGYQGQAADIEIHTKEILNIRQQLNEILAKHTGQDAETVARDTDRDNFMNGTQAV 191

Query: 197 DWGVVDKVLMSRI 209
           ++G++D +L  R 
Sbjct: 192 EYGLIDAMLDKRP 204


>gi|15639498|ref|NP_218948.1| ATP-dependent Clp protease proteolytic subunit [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189025737|ref|YP_001933509.1| ATP-dependent Clp protease proteolytic subunit [Treponema pallidum
           subsp. pallidum SS14]
 gi|6225161|sp|O83520|CLPP1_TREPA RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|3322799|gb|AAC65495.1| ATP-dependent Clp protease proteolytic component (clpP-1)
           [Treponema pallidum subsp. pallidum str. Nichols]
 gi|189018312|gb|ACD70930.1| ATP-dependent Clp protease proteolytic component [Treponema
           pallidum subsp. pallidum SS14]
 gi|291059884|gb|ADD72619.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Treponema
           pallidum subsp. pallidum str. Chicago]
          Length = 203

 Score =  260 bits (666), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 104/193 (53%), Positives = 146/193 (75%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVP V+EQ+  GERSYDI+SRLLK+RI+FV G+I D +A L+ AQLLFLE++NP K+IS
Sbjct: 7   NLVPYVIEQSGGGERSYDIFSRLLKDRIIFVDGEITDAVADLVVAQLLFLESQNPDKDIS 66

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAG+A+YDTMQ I P + T C+GQA+SM ++LL+ G  G RFALP++R++
Sbjct: 67  LYINSPGGAVTAGLAVYDTMQHICPEVQTICLGQASSMAAVLLAGGAPGKRFALPSSRVM 126

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQASD+   AQ+I+++K      +  + G++ E+V + ++RD  +SA +AC
Sbjct: 127 IHQPWGGVQGQASDVCIQAQEILRLKTLTIAYFALHTGQSEEQVREDMERDFFLSAEQAC 186

Query: 197 DWGVVDKVLMSRI 209
            +G+VD V+  R 
Sbjct: 187 SYGIVDTVMKRRK 199


>gi|219849052|ref|YP_002463485.1| Endopeptidase Clp [Chloroflexus aggregans DSM 9485]
 gi|219543311|gb|ACL25049.1| Endopeptidase Clp [Chloroflexus aggregans DSM 9485]
          Length = 221

 Score =  260 bits (666), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 94/196 (47%), Positives = 144/196 (73%), Gaps = 1/196 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+PMVVE T+RGER++DIYSRLLKERIV +   I+D +A LI AQLLFLE+E+P ++I L
Sbjct: 27  LIPMVVESTSRGERAFDIYSRLLKERIVILGTPIDDQIANLIVAQLLFLESEDPDRDIWL 86

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+ IYDTM  I+P ++T C+G A SM + +L+ G KG R++LP++ I +
Sbjct: 87  YINSPGGSVTAGLGIYDTMHHIRPDVATVCVGMAGSMATPILAGGAKGKRYSLPHSTIHM 146

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           H   GG  G A D+E  A++++++++ + E+  K+ G+  E + K  DRD  M+  +A +
Sbjct: 147 HPAGGGARGYAPDVEIMARELLRLQQLVRELLAKDTGQPIERIAKDFDRDLFMTPEQAKE 206

Query: 198 WGVVDKVLMSRIDIEE 213
           +G++D++L+ R D+++
Sbjct: 207 YGIIDEILI-REDVKK 221


>gi|260102504|ref|ZP_05752741.1| ATP-dependent Clp protease [Lactobacillus helveticus DSM 20075]
 gi|112148370|gb|ABI13539.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           helveticus CNRZ32]
 gi|260083687|gb|EEW67807.1| ATP-dependent Clp protease [Lactobacillus helveticus DSM 20075]
 gi|328461831|gb|EGF34057.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           helveticus MTCC 5463]
          Length = 194

 Score =  260 bits (666), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 101/193 (52%), Positives = 150/193 (77%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQT RGER+YDIYSRLLK+RI+ ++G+I D MA  I AQLLFL+A++  K+ISL
Sbjct: 2   LVPTVIEQTARGERAYDIYSRLLKDRIIMLSGEINDQMANSIIAQLLFLDAQDNTKDISL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+T+G+AI DTM FIK  +ST  +G AASM S++L++G KG RFALPN+ +L+
Sbjct: 62  YINSPGGVITSGLAIMDTMNFIKSDVSTIAIGMAASMASIILTSGTKGKRFALPNSTVLI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQ +DI+  A +I+K ++++NEI  +  G+  E+++K  +RD+ ++A EA +
Sbjct: 122 HQPLGGAQGQQTDIQIAANEILKSRKKINEILHETTGQPLEKIQKDTERDNYLTAEEAKE 181

Query: 198 WGVVDKVLMSRID 210
           +G++D+++ ++  
Sbjct: 182 YGLIDEIMANKKK 194


>gi|126727090|ref|ZP_01742927.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Rhodobacterales bacterium HTCC2150]
 gi|126703518|gb|EBA02614.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Rhodobacterales bacterium HTCC2150]
          Length = 209

 Score =  260 bits (665), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 121/198 (61%), Positives = 160/198 (80%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V E T+RG   YDI+SRLLKERI+FV+G + D MAT I AQLLFLEA+NP KEI++
Sbjct: 12  VIPTVEETTSRGSIRYDIFSRLLKERIIFVSGPVHDEMATTIVAQLLFLEADNPTKEIAM 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G++IYDTMQ+IKP +ST C+GQAASMGSLLL+AGE GMR++LPN+RI++
Sbjct: 72  YINSPGGVVTSGLSIYDTMQYIKPKVSTVCIGQAASMGSLLLAAGEPGMRYSLPNSRIMV 131

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG+ GQA+DI  HA +  K+K RLN IYVK+ G+T ++V   L+RD+ MSA EA  
Sbjct: 132 HQPSGGYQGQATDIMIHAAETQKLKDRLNGIYVKHTGQTMKKVVDGLERDNFMSAEEAKS 191

Query: 198 WGVVDKVLMSRIDIEEKS 215
           WG+VD+++ +R   ++  
Sbjct: 192 WGLVDEIVENRPKSDDDK 209


>gi|315037919|ref|YP_004031487.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           amylovorus GRL 1112]
 gi|325956392|ref|YP_004291804.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           acidophilus 30SC]
 gi|312276052|gb|ADQ58692.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           amylovorus GRL 1112]
 gi|325332957|gb|ADZ06865.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           acidophilus 30SC]
 gi|327183211|gb|AEA31658.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           amylovorus GRL 1118]
          Length = 194

 Score =  260 bits (665), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 101/193 (52%), Positives = 151/193 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQT RGER+YDIYSRLLK+RI+ ++G+I D MA  I AQLLFL+A++  K+ISL
Sbjct: 2   LVPTVIEQTARGERAYDIYSRLLKDRIIMLSGEINDQMANSIIAQLLFLDAQDNTKDISL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+T+G+AI DTM FIK  +ST  +G AASM S+LL++G KG RFALPN+ +L+
Sbjct: 62  YINSPGGVITSGLAIMDTMNFIKSDVSTIAIGMAASMASILLTSGTKGKRFALPNSTVLI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQ +DI+  A +I+K ++++NEI  +  G+  ++++K  +RD+ ++A EA +
Sbjct: 122 HQPLGGAQGQQTDIQIAANEILKSRKKINEILHETTGQPLDKIQKDTERDNYLTAEEAKE 181

Query: 198 WGVVDKVLMSRID 210
           +G++D++++++  
Sbjct: 182 YGLIDEIMVNKKK 194


>gi|219681825|ref|YP_002468211.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
           str. 5A (Acyrthosiphon pisum)]
 gi|219682380|ref|YP_002468764.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
           str. Tuc7 (Acyrthosiphon pisum)]
 gi|257471527|ref|ZP_05635526.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
           str. LSR1 (Acyrthosiphon pisum)]
 gi|219622113|gb|ACL30269.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
           str. Tuc7 (Acyrthosiphon pisum)]
 gi|219624668|gb|ACL30823.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
           str. 5A (Acyrthosiphon pisum)]
 gi|311086200|gb|ADP66282.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
           str. LL01 (Acyrthosiphon pisum)]
 gi|311086777|gb|ADP66858.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
           str. TLW03 (Acyrthosiphon pisum)]
 gi|311087365|gb|ADP67445.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
           str. JF99 (Acyrthosiphon pisum)]
 gi|311087863|gb|ADP67942.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
           str. JF98 (Acyrthosiphon pisum)]
          Length = 208

 Score =  260 bits (665), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 113/208 (54%), Positives = 165/208 (79%), Gaps = 1/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           M ++   K + +  +   +PMVVEQ +RGERSYDIYSRLLKERI+F+TG IED+MA  I 
Sbjct: 1   MLYDQI-KNNKKSSYATFIPMVVEQHSRGERSYDIYSRLLKERIIFITGAIEDNMANNIV 59

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGG++T+GM+IYDTMQF+KP IST C+GQA SM +LLL+
Sbjct: 60  AQILFLEAENPEKDIFLYINSPGGIITSGMSIYDTMQFVKPEISTICLGQACSMAALLLT 119

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           +G KG RF LPN+++++HQP GG+ GQASDI  HA++I+++K++LN++   + G++ +++
Sbjct: 120 SGAKGKRFCLPNSKVMIHQPLGGYQGQASDIAIHAREIMEMKKKLNKLMSFHTGQSIKKI 179

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
            K  +RD  +SA+++  +G++D +L  R
Sbjct: 180 NKDTERDCFLSANQSIKYGLIDFILSQR 207


>gi|149178551|ref|ZP_01857138.1| ATP-dependent clp protease proteolytic subunit [Planctomyces maris
           DSM 8797]
 gi|148842569|gb|EDL56945.1| ATP-dependent clp protease proteolytic subunit [Planctomyces maris
           DSM 8797]
          Length = 201

 Score =  260 bits (665), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 103/190 (54%), Positives = 144/190 (75%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L P V+E+  R ER+ DIYSRLL++RIV +  Q+ D +A  + AQLLFL+ ++P+ +I  
Sbjct: 4   LTPYVIEKNGRDERAMDIYSRLLQDRIVMMGSQVNDQVAQSLVAQLLFLQFDDPEADIHF 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGMAIYDTMQ+I   ++T+C+GQAASMG+LLL+AG  G R ALPN+RI++
Sbjct: 64  YINSPGGSVTAGMAIYDTMQYISCDVATYCIGQAASMGALLLTAGAAGKRNALPNSRIMI 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP  G  G A+D+E HA++++K+KRRLNEI + + G+T E++E+  DRD+ M A EA  
Sbjct: 124 HQPLAGMQGTATDLEIHAKEVLKMKRRLNEILLHHTGQTLEKIEEDTDRDNFMDAQEAKS 183

Query: 198 WGVVDKVLMS 207
           +G++D VL  
Sbjct: 184 YGLIDNVLEH 193


>gi|323449375|gb|EGB05263.1| hypothetical protein AURANDRAFT_31167 [Aureococcus anophagefferens]
          Length = 194

 Score =  260 bits (665), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 118/193 (61%), Positives = 156/193 (80%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VPMV+E+++RGER++DIYSRLLKERI+ + G + D +A+++ AQLLFLE+E+P   IS+
Sbjct: 1   MVPMVIERSSRGERAFDIYSRLLKERIIILNGPVHDELASVVTAQLLFLESEDPTSPISM 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVTAG+AIYDTMQ+I+P ++T CMGQAASMGSLLL+AG  GMR ALPNA+I+L
Sbjct: 61  YINSPGGVVTAGLAIYDTMQYIQPAVATLCMGQAASMGSLLLAAGADGMRRALPNAQIML 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQASDI   A++I+K + +LN+IYV +  K   +VEK +DRD   +A EA D
Sbjct: 121 HQPSGGAQGQASDIAIVAKEILKTRAKLNDIYVHHTKKPLADVEKVMDRDSYFTAQEAMD 180

Query: 198 WGVVDKVLMSRID 210
           +GVVD+V+  R  
Sbjct: 181 FGVVDEVVHPRTK 193


>gi|321265634|ref|XP_003197533.1| ATP-dependent Clp protease proteolytic subunit [Cryptococcus gattii
           WM276]
 gi|317464013|gb|ADV25746.1| ATP-dependent Clp protease proteolytic subunit, putative
           [Cryptococcus gattii WM276]
          Length = 260

 Score =  260 bits (665), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 119/208 (57%), Positives = 159/208 (76%), Gaps = 9/208 (4%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVP+VVEQT RGERSYDIYSRLL+ER+VF+   +    +TL+ AQLLFLEAE+P++ I 
Sbjct: 54  SLVPIVVEQTARGERSYDIYSRLLRERVVFLG-PVNSQDSTLLTAQLLFLEAEDPKRPIK 112

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGGVVT+G+AIYDTMQ+I PP+ TFCMGQAASMGSLLL+ GEKG R+AL N+ ++
Sbjct: 113 LYINSPGGVVTSGLAIYDTMQYISPPVHTFCMGQAASMGSLLLAGGEKGHRYALKNSSVM 172

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT-------YEEVEKTLDRDHI 189
           +HQPSGG  GQASDI  HA++I++I+  L +IY ++C +         +  EK L+RD+ 
Sbjct: 173 IHQPSGGAQGQASDIALHAKEILRIRAALTDIYAEHCTRPGEERTVALDRFEKALERDYF 232

Query: 190 MSASEACDWGVVDKVLMSR-IDIEEKSK 216
           M++ EA D+G+VDK++  R  +  E+ K
Sbjct: 233 MTSEEAIDFGIVDKIVTQRGKEASEEEK 260


>gi|160939893|ref|ZP_02087240.1| hypothetical protein CLOBOL_04784 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437327|gb|EDP15092.1| hypothetical protein CLOBOL_04784 [Clostridium bolteae ATCC
           BAA-613]
          Length = 196

 Score =  260 bits (665), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 100/196 (51%), Positives = 139/196 (70%), Gaps = 3/196 (1%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P V+EQT RGERSYDIYSRLL +RI+F+  ++ D  A+LI AQLLFLE+ +P K+I
Sbjct: 1   MSTIPYVIEQTGRGERSYDIYSRLLSDRIIFLGEEVSDTSASLIIAQLLFLESTDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG A+YDTMQ+IK  +ST C+G AAS G+ LL+ G  G R ALPN+ I
Sbjct: 61  QLYINSPGGSVTAGWAVYDTMQYIKCDVSTICLGLAASFGAFLLAGGAHGKRMALPNSEI 120

Query: 136 LLHQPSGG---FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           ++HQP+       G ASDI+  +  + K ++RLN +   N G++ EE+ +  +RD+ MSA
Sbjct: 121 MIHQPAIHGNGIQGPASDIKIMSDYMQKSRQRLNRVLAVNTGRSEEEIARDTERDNFMSA 180

Query: 193 SEACDWGVVDKVLMSR 208
            EA ++G++D +L  R
Sbjct: 181 EEALEYGLIDSILTRR 196


>gi|15617073|ref|NP_240286.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
           str. APS (Acyrthosiphon pisum)]
 gi|11386686|sp|P57547|CLPP_BUCAI RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|25289846|pir||D84985 endopeptidase Clp (EC 3.4.21.92) [imported] - Buchnera sp.  (strain
           APS)
 gi|10039138|dbj|BAB13172.1| ATP-dependent clp protease proteolytic subunit [Buchnera aphidicola
           str. APS (Acyrthosiphon pisum)]
          Length = 208

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 113/208 (54%), Positives = 164/208 (78%), Gaps = 1/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           M ++   K +    +   +PMVVEQ +RGERSYDIYSRLLKERI+F+TG IED+MA  I 
Sbjct: 1   MLYDQI-KNNKTSSYATFIPMVVEQHSRGERSYDIYSRLLKERIIFITGAIEDNMANNIV 59

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGG++T+GM+IYDTMQF+KP IST C+GQA SM +LLL+
Sbjct: 60  AQILFLEAENPEKDIFLYINSPGGIITSGMSIYDTMQFVKPEISTICLGQACSMAALLLT 119

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           +G KG RF LPN+++++HQP GG+ GQASDI  HA++I+++K++LN++   + G++ +++
Sbjct: 120 SGAKGKRFCLPNSKVMIHQPLGGYQGQASDIAIHAREIMEMKKKLNKLMSFHTGQSIKKI 179

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSR 208
            K  +RD  +SA+++  +G++D +L  R
Sbjct: 180 NKDTERDCFLSANQSIKYGLIDFILSQR 207


>gi|115384910|ref|XP_001209002.1| ATP-dependent Clp protease proteolytic subunit [Aspergillus terreus
           NIH2624]
 gi|114196694|gb|EAU38394.1| ATP-dependent Clp protease proteolytic subunit [Aspergillus terreus
           NIH2624]
          Length = 258

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 109/200 (54%), Positives = 148/200 (74%), Gaps = 4/200 (2%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
              P V E    G  +YDI+SRLLKERI+ + G++++ M+  I AQLLFLEA+NPQK I 
Sbjct: 46  TPTPFVTETVGGGWHTYDIFSRLLKERIICLNGEVDETMSASIVAQLLFLEADNPQKPIH 105

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAG+AIYDTM +I  P+ST C+GQAASMGSLLL  G  G R+ LP++ I+
Sbjct: 106 LYINSPGGSVTAGLAIYDTMTYIASPVSTICVGQAASMGSLLLCGGHPGKRYCLPHSSIM 165

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKN-CGK---TYEEVEKTLDRDHIMSA 192
           +HQPSGG+ GQASDI  HA++I++++ +LN+IY ++  GK   + EE+EK ++RD+ M A
Sbjct: 166 MHQPSGGYFGQASDIAIHAKEILRVREQLNKIYKRHLTGKKEMSLEEIEKLMERDYFMGA 225

Query: 193 SEACDWGVVDKVLMSRIDIE 212
            EA D G+VD+VL  R+  +
Sbjct: 226 KEALDMGIVDEVLDRRVKSK 245


>gi|220932330|ref|YP_002509238.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Halothermothrix orenii H 168]
 gi|259585957|sp|B8CY74|CLPP_HALOH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|219993640|gb|ACL70243.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Halothermothrix orenii H 168]
          Length = 198

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 111/199 (55%), Positives = 164/199 (82%), Gaps = 1/199 (0%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P+VVEQTNRGERSYDIYSRLLK+RIVF+   I D ++ LI AQLLFLEAE+P K+I
Sbjct: 1   MSLIPVVVEQTNRGERSYDIYSRLLKDRIVFLGHPINDELSNLIIAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTA +A+YDT+Q+IKP ++T CMGQAAS G+LLL++G KG R+ALPNAR+
Sbjct: 61  HLYINSPGGSVTAALAMYDTIQYIKPDVATICMGQAASAGALLLASGTKGKRYALPNARV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP+GG  G+A++ E H +++++++ RLNEI  K+ GK+ E++ K +++D+ M+A EA
Sbjct: 121 MIHQPAGGVQGKATEAEIHIKELLRLRERLNEILSKHTGKSVEQISKDVEQDYFMTAEEA 180

Query: 196 CDWGVVDKVLMSRIDIEEK 214
            ++G++D+V+  + ++++K
Sbjct: 181 LEYGIIDEVIT-KNELKDK 198


>gi|183220373|ref|YP_001838369.1| ATP-dependent Clp protease proteolytic subunit [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189910487|ref|YP_001962042.1| ATP-dependent Clp protease proteolytic subunit [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167775163|gb|ABZ93464.1| Protease subunit of endopeptidase Clp [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167778795|gb|ABZ97093.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 200

 Score =  260 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 105/195 (53%), Positives = 143/195 (73%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
              L+P V EQT+RG    D+YSRLL++RI+F+   I+D  A  +CAQLLFLEAENP ++
Sbjct: 1   MSTLLPYVSEQTSRGIDRMDVYSRLLRDRIIFLGAGIDDTYANAVCAQLLFLEAENPDRD 60

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I LYINSPGG V++G+AIYDTMQ IKP + T C+GQA+SM +LLL+ G KG R ALPN R
Sbjct: 61  IYLYINSPGGYVSSGLAIYDTMQLIKPEVRTLCIGQASSMAALLLAGGAKGKRSALPNGR 120

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQP GG  GQASDIE  A++I+K K  L ++Y K+ GK   +++K  +R+  MSA E
Sbjct: 121 IMMHQPYGGAGGQASDIEISAKEIIKTKNTLIDLYCKHIGKPAAQIQKDTERNFFMSAEE 180

Query: 195 ACDWGVVDKVLMSRI 209
           A ++G++D V++ R 
Sbjct: 181 AKEYGIIDNVILERK 195


>gi|156741459|ref|YP_001431588.1| endopeptidase Clp [Roseiflexus castenholzii DSM 13941]
 gi|156232787|gb|ABU57570.1| Endopeptidase Clp [Roseiflexus castenholzii DSM 13941]
          Length = 219

 Score =  260 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 96/204 (47%), Positives = 142/204 (69%), Gaps = 1/204 (0%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
                L+PMVVE TNRGER+YDIYSRLLKER++ +   IED +A LI AQLLFLE E+P 
Sbjct: 15  PRIESLIPMVVESTNRGERAYDIYSRLLKERVILLGTPIEDQIANLIVAQLLFLEHEDPD 74

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           ++I LYINSPGG +TAG+AIYDTMQ I+P ++T C+G A SM + +L+ G KG R++LP+
Sbjct: 75  RDIWLYINSPGGSITAGLAIYDTMQVIRPDVATVCVGMAGSMATPILAGGAKGKRYSLPH 134

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           + I +H   GG  G A D+E  A+++++ ++ + E+  K+ G+  E + +  DRD  M  
Sbjct: 135 STIHMHPAGGGARGYAPDVEIMARELLREQQLIRELLAKDTGQPLERIARDFDRDLFMDP 194

Query: 193 SEACDWGVVDKVLMSRIDIEEKSK 216
            +A ++G++D++L  R D+   S+
Sbjct: 195 QQAKEYGIIDEILT-REDLPAASE 217


>gi|259501068|ref|ZP_05743970.1| ATP-dependent Clp protease [Lactobacillus iners DSM 13335]
 gi|302190483|ref|ZP_07266737.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus iners
           AB-1]
 gi|309803807|ref|ZP_07697892.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus iners LactinV 11V1-d]
 gi|309804605|ref|ZP_07698670.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus iners LactinV 09V1-c]
 gi|309805854|ref|ZP_07699889.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus iners LactinV 03V1-b]
 gi|309808282|ref|ZP_07702189.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus iners LactinV 01V1-a]
 gi|309809384|ref|ZP_07703246.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus iners SPIN 2503V10-D]
 gi|312870768|ref|ZP_07730874.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus iners LEAF 3008A-a]
 gi|312873057|ref|ZP_07733116.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus iners LEAF 2062A-h1]
 gi|312874331|ref|ZP_07734362.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus iners LEAF 2052A-d]
 gi|312875077|ref|ZP_07735094.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus iners LEAF 2053A-b]
 gi|315653872|ref|ZP_07906788.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus iners
           ATCC 55195]
 gi|325913268|ref|ZP_08175636.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus iners UPII 60-B]
 gi|329920382|ref|ZP_08277114.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus iners SPIN 1401G]
 gi|259167762|gb|EEW52257.1| ATP-dependent Clp protease [Lactobacillus iners DSM 13335]
 gi|308164041|gb|EFO66303.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus iners LactinV 11V1-d]
 gi|308165997|gb|EFO68215.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus iners LactinV 09V1-c]
 gi|308167763|gb|EFO69907.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus iners LactinV 03V1-b]
 gi|308168485|gb|EFO70596.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus iners LactinV 01V1-a]
 gi|308170295|gb|EFO72326.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus iners SPIN 2503V10-D]
 gi|311089367|gb|EFQ47794.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus iners LEAF 2053A-b]
 gi|311090097|gb|EFQ48510.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus iners LEAF 2052A-d]
 gi|311091290|gb|EFQ49675.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus iners LEAF 2062A-h1]
 gi|311093644|gb|EFQ51982.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus iners LEAF 3008A-a]
 gi|315488568|gb|EFU78214.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus iners
           ATCC 55195]
 gi|325477371|gb|EGC80515.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus iners UPII 60-B]
 gi|328936058|gb|EGG32511.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus iners SPIN 1401G]
          Length = 194

 Score =  260 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 102/193 (52%), Positives = 148/193 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQT RGER+YDIYSRLLK+R++ ++G+I D MA  I AQLLFL+A++  K+ISL
Sbjct: 2   LVPTVIEQTARGERAYDIYSRLLKDRVIMLSGEINDTMANSIIAQLLFLDAQDNTKDISL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+T+G+AI DTM FIK  +ST  +G AASM S+LL+AG KG RFALPN+ +L+
Sbjct: 62  YINSPGGVITSGLAIMDTMNFIKSDVSTIAIGMAASMASILLTAGTKGKRFALPNSTVLI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQ +DI+  A +I+K + ++N I  +  G+  E+++   +RD  ++A EA D
Sbjct: 122 HQPLGGAQGQQTDIQIAANEILKSREKINSILHETTGQPLEKIQADTERDKYLTAQEAKD 181

Query: 198 WGVVDKVLMSRID 210
           +G++D++L+++ +
Sbjct: 182 YGLIDEILVNKNN 194


>gi|15834704|ref|NP_296463.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia muridarum
           Nigg]
 gi|270284870|ref|ZP_06194264.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia muridarum
           Nigg]
 gi|270288897|ref|ZP_06195199.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia muridarum
           Weiss]
 gi|301336249|ref|ZP_07224451.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia muridarum
           MopnTet14]
 gi|14194531|sp|Q9PLM0|CLPP2_CHLMU RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|7190114|gb|AAF38961.1| ATP-dependent Clp protease, proteolytic subunit [Chlamydia
           muridarum Nigg]
          Length = 203

 Score =  259 bits (663), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 99/200 (49%), Positives = 150/200 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP VVE T RGER+ DIYSRLLK+RIV +  +I + +A  + AQLLFL +E+P K+I
Sbjct: 1   MTLVPYVVEDTGRGERAMDIYSRLLKDRIVMIGQEITEPLANTVIAQLLFLMSEDPTKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            ++INSPGG +TAG+AIYDT++F+   ++T+C+GQAASMG+LLLSAG KG R+ALP++R+
Sbjct: 61  QIFINSPGGYITAGLAIYDTIRFLGCDVNTYCIGQAASMGALLLSAGTKGKRYALPHSRM 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  G ++DI+  A +I+ +K+ L+ I  +  G+  E++ +  +RD  M A EA
Sbjct: 121 MIHQPSGGIIGTSADIQLQAAEILTLKKHLSNILAECTGQPVEKIIEDSERDFFMGAEEA 180

Query: 196 CDWGVVDKVLMSRIDIEEKS 215
             +G++DKV+ S  + ++K+
Sbjct: 181 IAYGLIDKVVSSAKETKDKN 200


>gi|237736664|ref|ZP_04567145.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           mortiferum ATCC 9817]
 gi|229420526|gb|EEO35573.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           mortiferum ATCC 9817]
          Length = 191

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 109/188 (57%), Positives = 148/188 (78%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P V+E   R ER+YDIYSRLLK+RI+F+  +I+D++A  I AQLLFLEAE+P+K+I +YI
Sbjct: 4   PTVIENNGRSERAYDIYSRLLKDRIIFLGTEIDDNVANAIVAQLLFLEAEDPEKDIIMYI 63

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGGVVTAGMAIYDTM +IKP + T C+GQAASMG+LLLSAG KG RFAL ++RI++HQ
Sbjct: 64  NSPGGVVTAGMAIYDTMNYIKPDVQTVCIGQAASMGALLLSAGAKGKRFALEHSRIMIHQ 123

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQA+DIE  A++I+++K  L++I     GK+ EE+ +  +RD+ MSA EA ++G
Sbjct: 124 PLGGARGQATDIEIQAKEILRMKEMLSQILANVSGKSVEEILRDTERDNYMSAQEAVEYG 183

Query: 200 VVDKVLMS 207
           ++D+V   
Sbjct: 184 LIDQVFKK 191


>gi|300869048|ref|ZP_07113650.1| ATP-dependent Clp protease proteolytic subunit [Oscillatoria sp.
           PCC 6506]
 gi|300332959|emb|CBN58844.1| ATP-dependent Clp protease proteolytic subunit [Oscillatoria sp.
           PCC 6506]
          Length = 197

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 96/197 (48%), Positives = 146/197 (74%), Gaps = 1/197 (0%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
            + +  VP  +  +   ER  DIY+RL +ERI+F+  ++ D +A  I A LL+L++++  
Sbjct: 2   PIGVPSVPYRLPGSTY-ERWIDIYTRLSQERIIFLGQEVTDGLANRIVAYLLYLDSDDST 60

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K I +YINSPGG VTAGMAI+DTMQ+IK  + T C+GQAASMG+ LL+AG KG R ALP+
Sbjct: 61  KPIFIYINSPGGSVTAGMAIFDTMQYIKSEVVTMCVGQAASMGAFLLAAGTKGKRLALPH 120

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           ARI++HQP GG  GQA+DI+  A++I++++++LNE+  K  G+T E+++K  DRD+ MSA
Sbjct: 121 ARIMIHQPLGGTRGQATDIQIEAKEILRVRQQLNEMLAKRTGQTLEKIQKDTDRDYFMSA 180

Query: 193 SEACDWGVVDKVLMSRI 209
           +EA ++G++D+V+  R+
Sbjct: 181 AEAKEYGLIDQVIEERV 197


>gi|194366563|ref|YP_002029173.1| ATP-dependent Clp protease proteolytic subunit [Stenotrophomonas
           maltophilia R551-3]
 gi|194349367|gb|ACF52490.1| Endopeptidase Clp [Stenotrophomonas maltophilia R551-3]
          Length = 202

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 115/196 (58%), Positives = 158/196 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+PMVVE++ RGERSYDIYSRLL+ERI+F+ G+++D ++ L+CAQLLFLE+ENP+K I
Sbjct: 5   MQLIPMVVERSERGERSYDIYSRLLRERIIFLNGEVDDTVSALVCAQLLFLESENPEKPI 64

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGV+++G+A+YDTMQ+I  P+ T CMG A SMGS LL AGE G R AL NA +
Sbjct: 65  HLYINSPGGVISSGLAMYDTMQYISAPVHTLCMGTARSMGSFLLMAGEPGHRAALANASL 124

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
            +HQP GG  GQASDI  HA+++ + K+R+  +Y ++CG++ EEVE+TLDRD  MSA +A
Sbjct: 125 HVHQPLGGVQGQASDIFIHAEEMQRTKQRITRLYAQHCGRSVEEVEQTLDRDRFMSAEQA 184

Query: 196 CDWGVVDKVLMSRIDI 211
           C+WG++D+VL+ R  +
Sbjct: 185 CEWGLIDQVLLRRDAL 200


>gi|27904898|ref|NP_778024.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
           str. Bp (Baizongia pistaciae)]
 gi|31076632|sp|Q89AA1|CLPP_BUCBP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|27904296|gb|AAO27129.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
           str. Bp (Baizongia pistaciae)]
          Length = 205

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 112/192 (58%), Positives = 159/192 (82%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+PMV+E+T+ GERSYDIYSRLLKERI+F+TG I+D+ A LI AQ+LFLEAEN +++I +
Sbjct: 14  LIPMVIEKTSYGERSYDIYSRLLKERIIFLTGTIDDNTANLIVAQMLFLEAENAKQDIYI 73

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+TAGM+IYDTM+FIKP ++T C+GQA SM +L+L+AG+KG R+ LPN+RI++
Sbjct: 74  YINSPGGVITAGMSIYDTMKFIKPNVNTICIGQACSMAALILTAGKKGYRYCLPNSRIMI 133

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG++GQASDIE HA++I+K+KR+LNE+   +  ++   +EK  +RD  +SA++A  
Sbjct: 134 HQPIGGYNGQASDIEIHAKEIIKVKRKLNELMAFHTSQSINTIEKDTERDCFLSANQAIK 193

Query: 198 WGVVDKVLMSRI 209
           +G++D +L  R 
Sbjct: 194 YGLIDTILSYRT 205


>gi|296807623|ref|XP_002844228.1| ATP-dependent Clp protease proteolytic subunit [Arthroderma otae
           CBS 113480]
 gi|238843711|gb|EEQ33373.1| ATP-dependent Clp protease proteolytic subunit [Arthroderma otae
           CBS 113480]
          Length = 238

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 109/201 (54%), Positives = 151/201 (75%), Gaps = 3/201 (1%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
              P V E    G  +YDI+SRLLKERIV + G++++ ++  I AQLLFLEA+NP+K I 
Sbjct: 35  TPTPFVTETVGGGWHTYDIFSRLLKERIVCLNGEVDESLSAAIVAQLLFLEADNPEKPIQ 94

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAG+AIYDTM +I+ P+ST C+GQAASMGSLLL  GE G R+ LP++ I+
Sbjct: 95  LYINSPGGSVTAGLAIYDTMTYIQSPVSTICVGQAASMGSLLLCGGEAGKRYCLPHSSIM 154

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKN-CGK--TYEEVEKTLDRDHIMSAS 193
           +HQPSGG+ GQA+DI  HA++I++++ +LN+IY ++  GK  T EE+EK ++RD+ M A 
Sbjct: 155 IHQPSGGYFGQATDIAIHAKEILRVRHQLNQIYKRHLTGKEMTLEEIEKLMERDYFMGAK 214

Query: 194 EACDWGVVDKVLMSRIDIEEK 214
           EA + G+VD +L  RI  +E+
Sbjct: 215 EALEMGIVDSILDRRIPPKEE 235


>gi|51892052|ref|YP_074743.1| ATP-dependent Clp protease proteolytic subunit [Symbiobacterium
           thermophilum IAM 14863]
 gi|67460469|sp|Q67QZ4|CLPP2_SYMTH RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|51855741|dbj|BAD39899.1| ATP-dependent Clp protease proteolytic subunit [Symbiobacterium
           thermophilum IAM 14863]
          Length = 200

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 104/196 (53%), Positives = 147/196 (75%), Gaps = 3/196 (1%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
              L+P+V+EQT+RGERSYDIYSRLLK+RI+F+   I+D +A  + AQLLFLE+++P KE
Sbjct: 1   MSSLIPIVIEQTSRGERSYDIYSRLLKDRIIFLGTSIDDQVANAVTAQLLFLESDDPDKE 60

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I++YINS GG+ +AG+AIYDTMQ IKP ++T+ +G AASM ++LL+ G  G R+ALP+AR
Sbjct: 61  INMYINSSGGITSAGLAIYDTMQHIKPKVNTYAIGMAASMAAVLLAGGT-GTRYALPHAR 119

Query: 135 ILLHQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           IL+HQP   GG  GQ +DIE  A++++  K +L EI  K+ G+  E+V++  +RD  MSA
Sbjct: 120 ILIHQPWVKGGIGGQVTDIEITAKELLHTKEKLAEIIAKHTGQPLEKVKEDSERDRWMSA 179

Query: 193 SEACDWGVVDKVLMSR 208
            EA  +G+VD V+  R
Sbjct: 180 EEAKAYGLVDVVVQPR 195


>gi|15605439|ref|NP_220225.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis D/UW-3/CX]
 gi|76789446|ref|YP_328532.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis A/HAR-13]
 gi|166154048|ref|YP_001654166.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis 434/Bu]
 gi|166154923|ref|YP_001653178.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis L2b/UCH-1/proctitis]
 gi|237803136|ref|YP_002888330.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis B/Jali20/OT]
 gi|237805057|ref|YP_002889211.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis B/TZ1A828/OT]
 gi|255311535|ref|ZP_05354105.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis 6276]
 gi|255317836|ref|ZP_05359082.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis 6276s]
 gi|255349098|ref|ZP_05381105.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis 70]
 gi|255503635|ref|ZP_05382025.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis 70s]
 gi|255507314|ref|ZP_05382953.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis D(s)2923]
 gi|301335249|ref|ZP_07223493.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis L2tet1]
 gi|6831513|sp|O84712|CLPP2_CHLTR RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|92087003|sp|Q3KKY8|CLPP2_CHLTA RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|3329161|gb|AAC68301.1| CLP Protease [Chlamydia trachomatis D/UW-3/CX]
 gi|76167976|gb|AAX50984.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis A/HAR-13]
 gi|165930036|emb|CAP03519.1| ATP-dependent Clp protease proteolytic component [Chlamydia
           trachomatis 434/Bu]
 gi|165930911|emb|CAP06473.1| ATP-dependent Clp protease proteolytic component [Chlamydia
           trachomatis L2b/UCH-1/proctitis]
 gi|231273357|emb|CAX10272.1| ATP-dependent Clp protease proteolytic component [Chlamydia
           trachomatis B/TZ1A828/OT]
 gi|231274370|emb|CAX11165.1| ATP-dependent Clp protease proteolytic component [Chlamydia
           trachomatis B/Jali20/OT]
 gi|289525750|emb|CBJ15231.1| ATP-dependent Clp protease proteolytic component [Chlamydia
           trachomatis Sweden2]
 gi|296435322|gb|ADH17500.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis E/150]
 gi|296436250|gb|ADH18424.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis G/9768]
 gi|296437179|gb|ADH19349.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis G/11222]
 gi|296438110|gb|ADH20271.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis G/11074]
 gi|296439039|gb|ADH21192.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis E/11023]
 gi|297140611|gb|ADH97369.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis G/9301]
          Length = 203

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 100/200 (50%), Positives = 151/200 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP VVE T RGER+ DIYSRLLK+RIV +  +I + +A  + AQLLFL +E+P K+I
Sbjct: 1   MTLVPYVVEDTGRGERAMDIYSRLLKDRIVMIGQEITEPLANTVIAQLLFLMSEDPTKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            ++INSPGG +TAG+AIYDT++F+   ++T+C+GQAASMG+LLLSAG KG R+ALP++R+
Sbjct: 61  QIFINSPGGYITAGLAIYDTIRFLGCDVNTYCIGQAASMGALLLSAGTKGKRYALPHSRM 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  G ++DI+  A +I+ +K+ L+ I  +  G++ E++ +  +RD  M A EA
Sbjct: 121 MIHQPSGGIIGTSADIQLQAAEILTLKKHLSNILAECTGQSVEKIIEDSERDFFMGAEEA 180

Query: 196 CDWGVVDKVLMSRIDIEEKS 215
             +G++DKV+ S  + ++KS
Sbjct: 181 IAYGLIDKVISSAKETKDKS 200


>gi|75907528|ref|YP_321824.1| ATP-dependent Clp protease proteolytic subunit [Anabaena variabilis
           ATCC 29413]
 gi|115311345|sp|Q3MDK7|CLPP2_ANAVT RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|75701253|gb|ABA20929.1| ATP-dependent Clp protease proteolytic subunit ClpP [Anabaena
           variabilis ATCC 29413]
          Length = 197

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 98/193 (50%), Positives = 140/193 (72%), Gaps = 2/193 (1%)

Query: 19  VPMVVEQTNRGE--RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +   G+      IY RL +ERI+F+   ++D +A  I A +L+L++E+P K+I 
Sbjct: 5   VPKVPYRMPGGQFTDWISIYDRLYRERIIFLGRDVDDEIANQIIAVMLYLDSEDPGKDIY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG+VT+G+AIYDTMQ IK  + T C+G AASMGS LL+AG KG R ALP++RI+
Sbjct: 65  LYINSPGGMVTSGLAIYDTMQHIKSDVVTICVGLAASMGSFLLAAGTKGKRLALPHSRIM 124

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  GQA+DIE  A++I++I+ +LN+IY  N  +   ++EK +DRD  MSA EA 
Sbjct: 125 IHQPSGGTRGQATDIEIEAREILRIRHQLNQIYANNTNQPLAKIEKDMDRDFFMSAQEAK 184

Query: 197 DWGVVDKVLMSRI 209
           ++G++D+V+  RI
Sbjct: 185 EYGLIDRVIEERI 197


>gi|149196344|ref|ZP_01873399.1| ATP-dependent Clp protease, proteolytic subunit (ClpP)
           [Lentisphaera araneosa HTCC2155]
 gi|149140605|gb|EDM29003.1| ATP-dependent Clp protease, proteolytic subunit (ClpP)
           [Lentisphaera araneosa HTCC2155]
          Length = 199

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 101/191 (52%), Positives = 141/191 (73%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VPMVVEQ+  GER YDIYSRLLK+RIV ++  ++DH+A+L+ AQ LFL+AE+P+K+I  +
Sbjct: 9   VPMVVEQSANGERGYDIYSRLLKDRIVMLSTPVDDHVASLLVAQFLFLQAEDPKKDIQFF 68

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+ IYDTMQ +   I T C+GQAASMG++LLSAG  G R+ LP++R+++H
Sbjct: 69  INSPGGSVTAGLMIYDTMQILSCDIQTVCIGQAASMGAVLLSAGTAGKRYCLPHSRVMIH 128

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  G A+DI   A +I ++K+ L +I   + GK Y  +E+  DRD+ MS  EA  +
Sbjct: 129 QPSGGAGGTAADITIQAAEIKRLKKELYDILSHHTGKDYPTIEEDSDRDYFMSGEEAKAY 188

Query: 199 GVVDKVLMSRI 209
           G+VD ++  + 
Sbjct: 189 GLVDHIMTKKA 199


>gi|27375722|ref|NP_767251.1| ATP-dependent Clp protease proteolytic subunit [Bradyrhizobium
           japonicum USDA 110]
 gi|67460544|sp|Q89WR7|CLPP1_BRAJA RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|27348860|dbj|BAC45876.1| ATP-dependent protease proteolytic subunit [Bradyrhizobium
           japonicum USDA 110]
          Length = 200

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 121/194 (62%), Positives = 154/194 (79%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
            L LVPMVVEQ+ RGERS+DIYSRLL+ERI+F+ G++ D M+ L+CAQLLFLEAENP + 
Sbjct: 4   MLQLVPMVVEQSARGERSFDIYSRLLRERIIFLNGEVNDAMSGLVCAQLLFLEAENPNRP 63

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I+LYINS GGVVT+G+A+YDTMQFIK P+ T CMG A SMGS LL AGE+G R ALPNA 
Sbjct: 64  INLYINSYGGVVTSGLAMYDTMQFIKAPVHTLCMGTARSMGSFLLMAGERGHRAALPNAS 123

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           + +HQP GGF GQASDI  HA ++ + KRR+  +Y ++CG+T  EVE+TLDRDH M+A +
Sbjct: 124 LHVHQPLGGFQGQASDILIHANEMQETKRRITRLYAQHCGRTEAEVERTLDRDHFMTAQQ 183

Query: 195 ACDWGVVDKVLMSR 208
             +WG++D+V   R
Sbjct: 184 GVEWGLIDRVFAER 197


>gi|91083021|ref|XP_974664.1| PREDICTED: similar to ClpP caseinolytic peptidase, ATP-dependent,
           proteolytic subunit homolog (E. coli) [Tribolium
           castaneum]
 gi|270007650|gb|EFA04098.1| hypothetical protein TcasGA2_TC014333 [Tribolium castaneum]
          Length = 258

 Score =  259 bits (661), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 110/196 (56%), Positives = 160/196 (81%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G +P+VVEQ+ RG+R+YDIYSRLL+ERI+ + G I D+ +++I AQLLFL+AE+  K I 
Sbjct: 37  GHIPIVVEQSGRGDRAYDIYSRLLRERIICLMGPITDYTSSVIIAQLLFLQAESASKPIH 96

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGGV+T+G+ IYDTMQ+I PP++T+C+GQA SM SL+L+AG KGMR +LPN+RI+
Sbjct: 97  MYINSPGGVITSGLGIYDTMQYILPPVATWCVGQACSMASLILAAGAKGMRHSLPNSRIM 156

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG SGQA+DI+  A++I+K+K+++N +YVK+     E VE++++RD+ MS SEA 
Sbjct: 157 IHQPSGGASGQATDIKIQAEEILKMKKQINCLYVKHTETALERVEQSVERDNFMSPSEAL 216

Query: 197 DWGVVDKVLMSRIDIE 212
           ++G++DKVL S    +
Sbjct: 217 EFGIIDKVLTSPPKTK 232


>gi|297748837|gb|ADI51383.1| hypothetical protein CTDEC_0706 [Chlamydia trachomatis D-EC]
 gi|297749717|gb|ADI52395.1| hypothetical protein CTDLC_0706 [Chlamydia trachomatis D-LC]
          Length = 209

 Score =  259 bits (661), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 100/203 (49%), Positives = 151/203 (74%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
              + LVP VVE T RGER+ DIYSRLLK+RIV +  +I + +A  + AQLLFL +E+P 
Sbjct: 4   STHMTLVPYVVEDTGRGERAMDIYSRLLKDRIVMIGQEITEPLANTVIAQLLFLMSEDPT 63

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K+I ++INSPGG +TAG+AIYDT++F+   ++T+C+GQAASMG+LLLSAG KG R+ALP+
Sbjct: 64  KDIQIFINSPGGYITAGLAIYDTIRFLGCDVNTYCIGQAASMGALLLSAGTKGKRYALPH 123

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           +R+++HQPSGG  G ++DI+  A +I+ +K+ L+ I  +  G++ E++ +  +RD  M A
Sbjct: 124 SRMMIHQPSGGIIGTSADIQLQAAEILTLKKHLSNILAECTGQSVEKIIEDSERDFFMGA 183

Query: 193 SEACDWGVVDKVLMSRIDIEEKS 215
            EA  +G++DKV+ S  + ++KS
Sbjct: 184 EEAIAYGLIDKVISSAKETKDKS 206


>gi|254512409|ref|ZP_05124476.1| Clp protease [Rhodobacteraceae bacterium KLH11]
 gi|221536120|gb|EEE39108.1| Clp protease [Rhodobacteraceae bacterium KLH11]
          Length = 196

 Score =  259 bits (661), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 124/192 (64%), Positives = 159/192 (82%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MVVEQT+RGER+YDI+SRLLKERI+F+ G I D M+ L+ AQLL LEAENP KEIS+YIN
Sbjct: 1   MVVEQTSRGERAYDIFSRLLKERIIFINGPIHDGMSHLVVAQLLHLEAENPNKEISIYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGGVVT+G++IYDTMQ+IKP  ST  +GQAASMGS+LL+ GEKGMRF+LPN+RI++HQP
Sbjct: 61  SPGGVVTSGLSIYDTMQYIKPKCSTLVIGQAASMGSVLLAGGEKGMRFSLPNSRIMVHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
           SGG+ GQASDI  HA +  K+K RL +IYV++ G+T + VEK LDRD+ MS  EA DWG 
Sbjct: 121 SGGYQGQASDIMIHAAETQKLKDRLYDIYVRHTGQTKKAVEKALDRDNFMSPEEAKDWGH 180

Query: 201 VDKVLMSRIDIE 212
           +D+++ +R  ++
Sbjct: 181 IDEIVENRAKMD 192


>gi|238854870|ref|ZP_04645200.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           jensenii 269-3]
 gi|256851455|ref|ZP_05556844.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           jensenii 27-2-CHN]
 gi|260660876|ref|ZP_05861791.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           jensenii 115-3-CHN]
 gi|260664157|ref|ZP_05865010.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           jensenii SJ-7A-US]
 gi|282931582|ref|ZP_06337075.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           jensenii 208-1]
 gi|282933455|ref|ZP_06338831.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           jensenii 208-1]
 gi|297206270|ref|ZP_06923665.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           jensenii JV-V16]
 gi|313472372|ref|ZP_07812864.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           jensenii 1153]
 gi|238832660|gb|EEQ24967.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           jensenii 269-3]
 gi|239529769|gb|EEQ68770.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           jensenii 1153]
 gi|256616517|gb|EEU21705.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           jensenii 27-2-CHN]
 gi|260548598|gb|EEX24573.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           jensenii 115-3-CHN]
 gi|260562043|gb|EEX28012.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           jensenii SJ-7A-US]
 gi|281302386|gb|EFA94612.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           jensenii 208-1]
 gi|281304193|gb|EFA96302.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           jensenii 208-1]
 gi|297149396|gb|EFH29694.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           jensenii JV-V16]
          Length = 193

 Score =  259 bits (661), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 104/190 (54%), Positives = 149/190 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQT RGER+YDIYSRLLK+RI+ ++G+I D MA  I AQLLFL+A++  K+ISL
Sbjct: 2   LVPTVIEQTARGERAYDIYSRLLKDRIIMLSGEINDQMANSIIAQLLFLDAQDNTKDISL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+T+G+AI DTM FIK  +ST  +G AASM S+LL++G KG RFALPN+ +L+
Sbjct: 62  YINSPGGVITSGLAIMDTMNFIKSDVSTIAIGMAASMASILLTSGTKGKRFALPNSTVLI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQ +DI+  A++I+K +++LNEI  +  G+  E++ K  +RD+ ++A EA D
Sbjct: 122 HQPLGGAQGQQTDIQIAAEEILKSRKKLNEILHETTGQPIEKILKDTERDNYLTAQEAKD 181

Query: 198 WGVVDKVLMS 207
           +G++D+++ +
Sbjct: 182 YGLIDEIMTN 191


>gi|167748739|ref|ZP_02420866.1| hypothetical protein ANACAC_03513 [Anaerostipes caccae DSM 14662]
 gi|167651709|gb|EDR95838.1| hypothetical protein ANACAC_03513 [Anaerostipes caccae DSM 14662]
          Length = 202

 Score =  259 bits (661), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 102/196 (52%), Positives = 143/196 (72%), Gaps = 3/196 (1%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P V+EQTN+GERSYDI+SRLL +RI+F+  ++ D  A+LI AQ+LFLEA++P ++I
Sbjct: 1   MSTIPYVIEQTNQGERSYDIFSRLLSDRIIFLGEEVSDISASLIVAQMLFLEAQDPGRDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG AIYDTM++I+  ++T C+G AAS G+ LL+ G +G R ALPNA I
Sbjct: 61  QLYINSPGGSVTAGFAIYDTMKYIQCDVATICVGLAASFGAFLLAGGTQGKRMALPNAEI 120

Query: 136 LLHQPSGG---FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           ++HQP+       G ASDI+  +  + K K+RLN I  +N G++ EE+E+  DRDH MSA
Sbjct: 121 MIHQPAIHGNGIQGPASDIKIMSDYMQKNKQRLNRILAENTGRSIEEIERDTDRDHFMSA 180

Query: 193 SEACDWGVVDKVLMSR 208
            EA  +G++D V+  R
Sbjct: 181 EEALKYGLIDSVISKR 196


>gi|195118808|ref|XP_002003928.1| GI20379 [Drosophila mojavensis]
 gi|193914503|gb|EDW13370.1| GI20379 [Drosophila mojavensis]
          Length = 223

 Score =  259 bits (661), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 117/195 (60%), Positives = 153/195 (78%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MVVEQT RGER+YDI+SRLLKERI+ + G I D +++ + AQLLFL++EN  K I LYIN
Sbjct: 1   MVVEQTGRGERAYDIFSRLLKERIICLMGNITDDISSTVVAQLLFLQSENVNKPIHLYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGGVVTAG+AIYDTMQ++KPPI+T+C+GQA SMGSLLL+AG  GMR++LPNARI++HQP
Sbjct: 61  SPGGVVTAGLAIYDTMQYVKPPIATWCVGQACSMGSLLLAAGAPGMRYSLPNARIMIHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
           SGG  GQA+DI  HA++I+KIKR+L  IYVK+   +Y+E+   ++RDH M+  EA   G+
Sbjct: 121 SGGAQGQATDILIHAEEIIKIKRQLTNIYVKHAKNSYDEMCSRMERDHFMTPEEAKTLGI 180

Query: 201 VDKVLMSRIDIEEKS 215
           +D VL    +    S
Sbjct: 181 IDHVLEHPPETVSDS 195


>gi|221633185|ref|YP_002522410.1| Clp protease [Thermomicrobium roseum DSM 5159]
 gi|221155739|gb|ACM04866.1| Clp protease [Thermomicrobium roseum DSM 5159]
          Length = 205

 Score =  259 bits (661), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 98/189 (51%), Positives = 142/189 (75%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++PMV+E T+RGER+YDIYSRLL++RI+F+   I+D +A  + AQ+LFL  ENP+ +I L
Sbjct: 10  VIPMVIETTSRGERAYDIYSRLLRDRIIFLGTPIDDQVANAVIAQMLFLAHENPEADIKL 69

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG+V AG+AIYDTMQ I+P ++T+C+G  ASM ++LL+AG KG RFALP++R+L+
Sbjct: 70  YINSPGGLVYAGLAIYDTMQMIEPDVATYCVGLGASMAAVLLAAGTKGKRFALPHSRVLI 129

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQ + GF G   DIE  A++ + +   L E+   + G+ +E V++  +RD+ MSA EA D
Sbjct: 130 HQGTSGFRGSVPDIEIQARETLNLTTMLTELLAFHTGQPFERVKRDTERDYFMSAYEAKD 189

Query: 198 WGVVDKVLM 206
           +G+VD VL 
Sbjct: 190 YGIVDHVLE 198


>gi|87306486|ref|ZP_01088633.1| ATP-dependent clp protease proteolytic subunit [Blastopirellula
           marina DSM 3645]
 gi|87290665|gb|EAQ82552.1| ATP-dependent clp protease proteolytic subunit [Blastopirellula
           marina DSM 3645]
          Length = 196

 Score =  259 bits (661), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 106/192 (55%), Positives = 144/192 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P VVE++ R ER YDIYSRLLK+RI+F+  Q+ D MA  I AQ+LFL++E+P  +I
Sbjct: 1   MPLIPYVVEKSGREERVYDIYSRLLKDRIIFLGTQVNDEMANCIVAQMLFLQSEDPAADI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LY+NSPGG V+AGMAIYDTMQFI   ++T+C+GQAASMG++LL+AG  G R ALPNAR+
Sbjct: 61  HLYVNSPGGSVSAGMAIYDTMQFITCDVATYCIGQAASMGAVLLTAGAAGKRHALPNARV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP  G  G A +I  HA +  +IK RLNEI +K+ G T + +EK  DRD  MSA E+
Sbjct: 121 MIHQPLAGMQGTAEEILIHATEFKRIKHRLNEILIKHTGHTIDRIEKDTDRDRFMSAEES 180

Query: 196 CDWGVVDKVLMS 207
           C++G++D V+  
Sbjct: 181 CEYGLIDHVIEK 192


>gi|269215646|ref|ZP_06159500.1| Clp protease [Slackia exigua ATCC 700122]
 gi|269131133|gb|EEZ62208.1| Clp protease [Slackia exigua ATCC 700122]
          Length = 255

 Score =  259 bits (661), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 100/209 (47%), Positives = 142/209 (67%), Gaps = 2/209 (0%)

Query: 3   FEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQ 62
            E  A + S  +    +P V+EQ+ RGERSYDIYSRLL +RIVF+   I+D +A ++ AQ
Sbjct: 41  IERTAIRMSAHIGAYTIPYVIEQSPRGERSYDIYSRLLNDRIVFLGDAIDDGVANIVVAQ 100

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           LL LE+ +P+K+ISLYINSPGG V+AG+AIYD MQFI+  +ST C+G AASM S+L +AG
Sbjct: 101 LLHLESSDPEKDISLYINSPGGSVSAGLAIYDAMQFIRCDVSTVCLGMAASMASVLTAAG 160

Query: 123 EKGMRFALPNARILLHQPSGGFS--GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
             G RF  PN++I++HQP GG     Q +D +  A ++ K + RL  +   + GKT E++
Sbjct: 161 APGKRFVTPNSQIMIHQPMGGSGERTQQTDFDILANEMRKTRDRLEGLLATHTGKTVEQI 220

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRI 209
               +RDH ++A EA  +G+VD ++ SR 
Sbjct: 221 HADSERDHWLTAEEAKAYGLVDDIITSRA 249


>gi|325911461|ref|ZP_08173873.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus iners UPII 143-D]
 gi|325476811|gb|EGC79965.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Lactobacillus iners UPII 143-D]
          Length = 194

 Score =  259 bits (661), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 101/193 (52%), Positives = 148/193 (76%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQT RGER+YDIYSRLLK+R++ ++G+I D MA  I AQLLFL+A++  K+ISL
Sbjct: 2   LVPTVIEQTARGERAYDIYSRLLKDRVIMLSGEINDTMANSIIAQLLFLDAQDNTKDISL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+T+G+AI DTM FIK  +ST  +G AASM S+LL+AG KG RFALPN+ +L+
Sbjct: 62  YINSPGGVITSGLAIMDTMNFIKSDVSTIAIGMAASMASILLTAGTKGKRFALPNSTVLI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQ +DI+  A +I+K + ++N I  +  G+  E+++   +RD  ++A EA +
Sbjct: 122 HQPLGGAQGQQTDIQIAANEILKSREKINSILHETTGQPLEKIQADTERDKYLTAQEAKN 181

Query: 198 WGVVDKVLMSRID 210
           +G++D++L+++ +
Sbjct: 182 YGLIDEILVNKNN 194


>gi|297737943|emb|CBI27144.3| unnamed protein product [Vitis vinifera]
          Length = 209

 Score =  259 bits (661), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 106/189 (56%), Positives = 149/189 (78%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MV+E ++RGER+YDI+SRLLKERIV + G I D  A ++ AQLLFLE+ENP K I +Y+N
Sbjct: 1   MVIEHSSRGERAYDIFSRLLKERIVCINGPISDDTAHVVVAQLLFLESENPSKPIHMYLN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGG V+AG+AIYDTMQ+I+ P++T C+GQAASMGSLLL+AG KG R ALPNA I++HQP
Sbjct: 61  SPGGAVSAGLAIYDTMQYIRSPVNTICLGQAASMGSLLLAAGAKGERRALPNATIMIHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
           SGG+SGQA D+  H + I+++   LN +Y K+ G++ + ++K +DRD+ M+  EA ++G+
Sbjct: 121 SGGYSGQAKDMTIHTKQIIRVWDSLNALYAKHTGQSLDIIQKNMDRDYFMTPEEAKEFGI 180

Query: 201 VDKVLMSRI 209
           +D+V+  R 
Sbjct: 181 IDEVIDQRP 189


>gi|86357052|ref|YP_468944.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli CFN
           42]
 gi|116243105|sp|Q2KAB9|CLPP1_RHIEC RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|86281154|gb|ABC90217.1| endopeptidase Clp, subunit 1 protein [Rhizobium etli CFN 42]
          Length = 202

 Score =  259 bits (661), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 116/196 (59%), Positives = 160/196 (81%), Gaps = 1/196 (0%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMV+EQ++RGERS+DIYSRLL+ERI+F+ G++ D ++ L+CAQLLFLEA+ P+K I
Sbjct: 5   MQLVPMVIEQSSRGERSFDIYSRLLRERIIFLNGEVNDTVSALVCAQLLFLEAD-PEKPI 63

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGG VT+G+A+YDTM+FI+ P+ T CMG A SMGS LL AGE G R ALPNA I
Sbjct: 64  NLYINSPGGAVTSGLAMYDTMRFIRAPVHTLCMGTARSMGSFLLMAGEPGERAALPNASI 123

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQPSGGF GQASD+  HA++I+K K+R+  +Y ++CG++YE+ E+ +DRD  M+A EA
Sbjct: 124 LIHQPSGGFQGQASDMLIHAEEILKTKQRMTRLYAEHCGRSYEDFERGMDRDRFMTAEEA 183

Query: 196 CDWGVVDKVLMSRIDI 211
            +WG+++++L  R D 
Sbjct: 184 LEWGLIERILKVREDT 199


>gi|311030263|ref|ZP_07708353.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus sp.
           m3-13]
          Length = 193

 Score =  258 bits (660), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 99/192 (51%), Positives = 143/192 (74%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P V+EQ++RGERSYDIYSRLLK+RI+ +  +I D +A  + AQLLFL A++P+K+I
Sbjct: 1   MNTIPYVIEQSSRGERSYDIYSRLLKDRIIMIGEEINDQIANSVVAQLLFLAADDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGG  TAG AI DTM +IKP + T C+G AAS G++LL AG KG R ALPN+ I
Sbjct: 61  SIYINSPGGSTTAGFAILDTMHYIKPDVRTICIGMAASFGAMLLMAGTKGKRLALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K+K  L+++     G+  E++E+  DRD+ M+A EA
Sbjct: 121 MIHQPLGGARGQATEIEISARRILKLKGDLHKMIADYTGQPIEKIERDTDRDNFMTAGEA 180

Query: 196 CDWGVVDKVLMS 207
            ++G++D+V+  
Sbjct: 181 KEYGIIDEVIKK 192


>gi|330443929|ref|YP_004376915.1| Clp protease [Chlamydophila pecorum E58]
 gi|328807039|gb|AEB41212.1| Clp protease [Chlamydophila pecorum E58]
          Length = 204

 Score =  258 bits (660), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 98/200 (49%), Positives = 148/200 (74%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP VVE T RGER+ DIYSRLLK+RIV +  +I + +A  + AQLLFL +E+P+K+I
Sbjct: 1   MTLVPYVVEDTGRGERAMDIYSRLLKDRIVMIGQEITEPLANTVIAQLLFLMSEDPKKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            ++INSPGG +TAG+AIYDT++F+   ++T+C+GQAASMG+LLLSAG  G R+ALP++R+
Sbjct: 61  QIFINSPGGYITAGLAIYDTIRFLGCDVNTYCIGQAASMGALLLSAGTPGKRYALPHSRM 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  G ++DI+  A +I+ +K+ L  I  +  G+  E++ +  +RD  M A EA
Sbjct: 121 MIHQPSGGIIGTSADIQLQAAEILTLKKHLANILSECTGQPVEKIIEDSERDFFMGAEEA 180

Query: 196 CDWGVVDKVLMSRIDIEEKS 215
             +G++DKV+ S  + ++K 
Sbjct: 181 ISYGLIDKVVTSAKETKDKD 200


>gi|148657762|ref|YP_001277967.1| endopeptidase Clp [Roseiflexus sp. RS-1]
 gi|148569872|gb|ABQ92017.1| Endopeptidase Clp [Roseiflexus sp. RS-1]
          Length = 219

 Score =  258 bits (660), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 94/200 (47%), Positives = 141/200 (70%), Gaps = 1/200 (0%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            L+PMVVE TNRGER+YDIYSRLLKER++ +   I+D +A LI AQLLFLE E+P ++I 
Sbjct: 19  ALIPMVVESTNRGERAYDIYSRLLKERVILLGTPIDDQIANLIVAQLLFLEHEDPDRDIW 78

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG +TAG+AIYDTMQ I+P ++T C+G A SM + +L+ G KG R++LP++ I 
Sbjct: 79  LYINSPGGSITAGLAIYDTMQVIRPDVATVCVGMAGSMATPILAGGAKGKRYSLPHSTIH 138

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +H   GG  G A D+E  A+++++ ++ + E+  K+ G+  E + +  DRD  M   +A 
Sbjct: 139 MHPAGGGARGYAPDVEIMARELLREQQLIRELLAKDTGQPLERIARDFDRDLFMDPQQAK 198

Query: 197 DWGVVDKVLMSRIDIEEKSK 216
           ++G++D++L  R D+    +
Sbjct: 199 EYGIIDEILT-REDLPAAGE 217


>gi|270156951|ref|ZP_06185608.1| ATP-dependent Clp protease proteolytic subunit ClpP [Legionella
           longbeachae D-4968]
 gi|289164625|ref|YP_003454763.1| ATP-dependent Clp protease proteolytic subunit [Legionella
           longbeachae NSW150]
 gi|269988976|gb|EEZ95230.1| ATP-dependent Clp protease proteolytic subunit ClpP [Legionella
           longbeachae D-4968]
 gi|288857798|emb|CBJ11642.1| ATP-dependent Clp protease proteolytic subunit [Legionella
           longbeachae NSW150]
          Length = 212

 Score =  258 bits (660), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 125/203 (61%), Positives = 164/203 (80%), Gaps = 3/203 (1%)

Query: 14  VFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQK 73
              GLVPMV+EQT+RGERSYDIYSRLLKERI+F+ G++EDHMA L+ AQLLFLE+ENP+K
Sbjct: 11  NASGLVPMVIEQTSRGERSYDIYSRLLKERIIFLLGEVEDHMANLVVAQLLFLESENPEK 70

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +ISLYINSPGGVVTAG+AIYDT+QFIKP +ST C+GQAAS  +LLL AG  G RF LPN+
Sbjct: 71  DISLYINSPGGVVTAGLAIYDTIQFIKPDVSTLCIGQAASAAALLLCAGADGKRFCLPNS 130

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           R+++HQP GG+ GQA+DIE HA++ + ++ RLN I  K+  KT +++ +  +RD+ MSA+
Sbjct: 131 RVMIHQPLGGYRGQATDIEIHARETLTVRERLNNIMAKHTKKTPDQIMRDTERDNFMSAT 190

Query: 194 EACDWGVVDKVLMSRIDIEEKSK 216
           +A ++G++DKVL  R   E  SK
Sbjct: 191 QAVEYGLIDKVLYDR---ESASK 210


>gi|160945107|ref|ZP_02092333.1| hypothetical protein FAEPRAM212_02626 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442838|gb|EDP19843.1| hypothetical protein FAEPRAM212_02626 [Faecalibacterium prausnitzii
           M21/2]
          Length = 229

 Score =  258 bits (660), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 103/213 (48%), Positives = 154/213 (72%), Gaps = 5/213 (2%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           ++F    K   E  F+  VP VVEQ+  GERSYDI+SRLL +RI+ ++  + D  A+L+ 
Sbjct: 17  VNFANKLKPFQEANFMSFVPYVVEQSAHGERSYDIFSRLLNDRIIVLSEDVNDTTASLVV 76

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLL+LE ++P K+ISLYINSPGG ++AGMAI+DTMQ+IK  +ST CMG AASMG+ LL+
Sbjct: 77  AQLLYLEGQDPDKDISLYINSPGGSISAGMAIHDTMQYIKCDVSTICMGMAASMGAFLLA 136

Query: 121 AGEKGMRFALPNARILLHQP-----SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK 175
           +G KG RFALPNA I++HQP      GG SGQ +DI+ HA+ +V I+ ++N +  +  G+
Sbjct: 137 SGTKGKRFALPNAEIMIHQPLIGGQGGGLSGQTTDIKIHAEHMVYIRDKMNRMLSEYTGQ 196

Query: 176 TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
             E++++  +RD+ ++A +A ++G++D+V+  R
Sbjct: 197 PLEKIQQDTERDNYLTAQQAKEYGLIDEVIAHR 229


>gi|262199481|ref|YP_003270690.1| endopeptidase Clp [Haliangium ochraceum DSM 14365]
 gi|262082828|gb|ACY18797.1| Endopeptidase Clp [Haliangium ochraceum DSM 14365]
          Length = 202

 Score =  258 bits (660), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 103/187 (55%), Positives = 149/187 (79%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P VVE ++RGER++DIYSRLLK+RIVF+  ++ D +A +I AQLL+LE+E+ +KEI LYI
Sbjct: 12  PYVVESSHRGERTWDIYSRLLKDRIVFLGTEVNDDVANMITAQLLYLESEDAEKEIMLYI 71

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VTAGMAIYDTMQ I+ P++T C+GQAASMG+LLL+AG  G+R +LPN+RI++HQ
Sbjct: 72  NSPGGSVTAGMAIYDTMQHIRCPVATVCVGQAASMGALLLAAGSAGLRRSLPNSRIMIHQ 131

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           PS  F GQASDIE HA++I+  ++R NEI   +  ++ E++ K  +RD+ +  S+A ++G
Sbjct: 132 PSSAFRGQASDIEIHAKEILHTRQRTNEILAHHTKRSIEQIAKDTERDNFLQPSKALEFG 191

Query: 200 VVDKVLM 206
           ++D+++ 
Sbjct: 192 IIDEIIE 198


>gi|255657287|ref|ZP_05402696.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile QCD-23m63]
 gi|296451860|ref|ZP_06893579.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile NAP08]
 gi|296879744|ref|ZP_06903718.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile NAP07]
 gi|296259339|gb|EFH06215.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile NAP08]
 gi|296429215|gb|EFH15088.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile NAP07]
          Length = 194

 Score =  258 bits (660), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 101/192 (52%), Positives = 147/192 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT++GERSYDIYS+LLK+RI+F+  +I D +A+L+ AQLLFLE+E+P  +I
Sbjct: 1   MSLVPHVIEQTSQGERSYDIYSKLLKDRIIFIGEEINDAIASLVVAQLLFLESEDPDSDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG VTAG AIYDTM +++  +ST C+G AASM + LL+ G  G R+ALPNA I
Sbjct: 61  IIYINSPGGSVTAGFAIYDTMNYVRCDVSTICIGMAASMSAFLLAGGTHGKRYALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+D++    +I+KIK RL+ I+ +N GK+ E++ +  DRD+ M+A EA
Sbjct: 121 MIHQPMGGAKGQATDVKIAVDNILKIKERLDRIFSENTGKSIEDIRRDTDRDNFMTALEA 180

Query: 196 CDWGVVDKVLMS 207
            ++G++D ++  
Sbjct: 181 KEYGLIDYIMNR 192


>gi|145233903|ref|XP_001400324.1| ATP-dependent Clp protease proteolytic subunit [Aspergillus niger
           CBS 513.88]
 gi|134057262|emb|CAK96425.1| unnamed protein product [Aspergillus niger]
          Length = 251

 Score =  258 bits (659), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 109/197 (55%), Positives = 146/197 (74%), Gaps = 4/197 (2%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
              P V E    G  +YDI+SRLLKERI+ + G++++ M+  I AQLLFLEA+NPQK I 
Sbjct: 44  TPTPFVTETVGGGWHTYDIFSRLLKERIICLNGEVDETMSASIVAQLLFLEADNPQKPIH 103

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAG+AIYDTM +I  P+ST C+GQAASMGSLLL  G  G RF LP++ I+
Sbjct: 104 LYINSPGGSVTAGLAIYDTMTYIASPVSTICVGQAASMGSLLLCGGHPGKRFCLPHSSIM 163

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKN-CGK---TYEEVEKTLDRDHIMSA 192
           +HQPSGG+ GQASDI  HA++I++++ +LN+IY ++  GK   T +E+EK ++RD+ M A
Sbjct: 164 MHQPSGGYFGQASDIAIHAKEILRVRSQLNKIYKRHLTGKKEMTLDEIEKLMERDYFMGA 223

Query: 193 SEACDWGVVDKVLMSRI 209
            EA D G+VD++L  R 
Sbjct: 224 KEALDMGIVDEILDRRA 240


>gi|89055299|ref|YP_510750.1| ATP-dependent Clp protease proteolytic subunit ClpP [Jannaschia sp.
           CCS1]
 gi|116243142|sp|Q28NI7|CLPP_JANSC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|88864848|gb|ABD55725.1| ATP-dependent Clp protease proteolytic subunit ClpP [Jannaschia sp.
           CCS1]
          Length = 208

 Score =  258 bits (659), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 120/192 (62%), Positives = 146/192 (76%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQT+RGER+YDI+SRLLKERIVFV G +   M+ LI AQLL LEAENP KEIS
Sbjct: 11  NLVPMVVEQTSRGERAYDIFSRLLKERIVFVNGPVHSGMSHLIVAQLLHLEAENPSKEIS 70

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VTAGM+IYDTMQ+IKP +ST   G AASMGS++   GEKGMR ALPNA  L
Sbjct: 71  MYINSPGGEVTAGMSIYDTMQYIKPKVSTLVCGMAASMGSVIAVGGEKGMRLALPNAEFL 130

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  G ASDI   A+ I   + RL ++YVK+ G+ YE V++ LDRD  M+   A 
Sbjct: 131 VHQPSGGARGTASDILISARSIEATRERLYQLYVKHTGQDYETVQRALDRDTWMTPEVAL 190

Query: 197 DWGVVDKVLMSR 208
           +WG VD+++ +R
Sbjct: 191 EWGHVDEIVTTR 202


>gi|316967772|gb|EFV52155.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Trichinella
           spiralis]
          Length = 892

 Score =  258 bits (659), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 102/192 (53%), Positives = 151/192 (78%), Gaps = 2/192 (1%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P+VVEQT RGER+YDI+SRLL+ERI+ V G I D +++L+ AQLLFL++++  K +
Sbjct: 18  VPYIPIVVEQTGRGERAYDIFSRLLEERIICVMGPITDELSSLVIAQLLFLQSKSLTKPV 77

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPI--STFCMGQAASMGSLLLSAGEKGMRFALPNA 133
            +YINSPGG VTAG+ IYDTMQ+IKP I  +T+C+GQA SM SLLL++G +G R  LPNA
Sbjct: 78  HMYINSPGGSVTAGLGIYDTMQYIKPRILIATWCIGQACSMASLLLASGTEGYRNCLPNA 137

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           R+++HQPSG   GQA+DI   A++I+K+KR++N++YVK+  K Y  +E+ ++RD  MS  
Sbjct: 138 RVMIHQPSGQAVGQATDIMIQAEEIIKLKRQINKLYVKHTKKPYNVIEEAMERDLFMSPE 197

Query: 194 EACDWGVVDKVL 205
           +A ++G++DK++
Sbjct: 198 DAAEFGLIDKIV 209


>gi|296123572|ref|YP_003631350.1| endopeptidase Clp [Planctomyces limnophilus DSM 3776]
 gi|296015912|gb|ADG69151.1| Endopeptidase Clp [Planctomyces limnophilus DSM 3776]
          Length = 202

 Score =  258 bits (659), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 99/191 (51%), Positives = 146/191 (76%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVP V+E+  R ER+ DIYSRLL++RI+ +   I+D +A  I AQLLFL+ E+ + +I 
Sbjct: 3   NLVPYVIEKNGRDERAMDIYSRLLRDRIIILGSGIDDTVANTIVAQLLFLQFEDSKADIH 62

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG +TAGMAIYDTMQ++   ++T+C+GQ ASMG+LLL+AG  G R ALPN+RI+
Sbjct: 63  LYINSPGGSITAGMAIYDTMQYLSCDVATYCLGQCASMGALLLTAGAAGKRHALPNSRIM 122

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP  G  G A+++E HA++++++KRR+NEI +K+ G+TY+++E+  DRD+ M   EA 
Sbjct: 123 IHQPLAGMQGTATELEIHAKEVLRVKRRMNEILLKHTGQTYDQIERDTDRDNFMMPDEAK 182

Query: 197 DWGVVDKVLMS 207
            +G++DK+L  
Sbjct: 183 SYGLIDKILEK 193


>gi|71892027|ref|YP_277757.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
 gi|110816455|sp|Q493F8|CLPP_BLOPB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|71796133|gb|AAZ40884.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
          Length = 208

 Score =  258 bits (659), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 113/201 (56%), Positives = 153/201 (76%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           K      + +VP V+E T RG+R YDI+S LLKERI+F+TG IED +A LI AQ++FLE+
Sbjct: 8   KTPYCHRMVVVPTVIEHTIRGDRVYDIFSLLLKERIIFMTGTIEDSVANLIVAQMMFLES 67

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           EN +K+I LYINSPGGV+TAGM+IYDT+QF++P +STFCMGQAASM + LL++G KG RF
Sbjct: 68  ENSEKDIHLYINSPGGVITAGMSIYDTIQFVRPDVSTFCMGQAASMSAFLLASGTKGKRF 127

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
            LPNARI++HQP G F GQA+DI  H ++I+KIK  +N++  K+ G++ + + K  +RD 
Sbjct: 128 CLPNARIMIHQPLGSFQGQATDIAIHTREILKIKNNINKLMAKHTGQSIDIINKDTERDC 187

Query: 189 IMSASEACDWGVVDKVLMSRI 209
            +SA EA  +G+VD VL  RI
Sbjct: 188 FLSADEAMKYGLVDCVLSQRI 208


>gi|29840675|ref|NP_829781.1| ATP-dependent Clp protease proteolytic subunit [Chlamydophila
           caviae GPIC]
 gi|33300938|sp|Q821M0|CLPP2_CHLCV RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|29835025|gb|AAP05659.1| ATP-dependent Clp protease, proteolytic subunit [Chlamydophila
           caviae GPIC]
          Length = 203

 Score =  258 bits (659), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 100/200 (50%), Positives = 150/200 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP VVE T RGER+ DIYSRLLK+RIV +  +I + +A  + AQLLFL +E+P+K+I
Sbjct: 1   MTLVPYVVEDTGRGERAMDIYSRLLKDRIVMIGQEITEPLANTVIAQLLFLMSEDPKKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            ++INSPGG +TAG+AIYDT++F+   ++T+C+GQAASMG+LLLSAG KG R+ALP++R+
Sbjct: 61  KVFINSPGGYITAGLAIYDTIRFLGCDVNTYCIGQAASMGALLLSAGTKGKRYALPHSRM 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  G ++DI+  A +I+ +K+ L  I  +  G++ E++ +  +RD  M A EA
Sbjct: 121 MIHQPSGGIIGTSADIQLQAAEILTLKKHLANILSECTGQSVEKIIEDSERDFFMGAEEA 180

Query: 196 CDWGVVDKVLMSRIDIEEKS 215
             +G++DKV+ S  D ++K 
Sbjct: 181 ISYGLIDKVVSSAKDTKDKD 200


>gi|298531141|ref|ZP_07018542.1| Endopeptidase Clp [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509164|gb|EFI33069.1| Endopeptidase Clp [Desulfonatronospira thiodismutans ASO3-1]
          Length = 213

 Score =  258 bits (659), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 110/199 (55%), Positives = 156/199 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +   PMV+    R ERSYDI+SRLLK+RI+F+   ++D +A L+CAQLLFLE+E+ + EI
Sbjct: 1   MKYTPMVIHSEGRNERSYDIFSRLLKDRIIFIGVPVDDQLANLVCAQLLFLESESSEMEI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGG VTAGMAIYD++Q+I  P++T CMGQA+SMG+LLL+AG+KGMR+ALP++RI
Sbjct: 61  NLYINSPGGSVTAGMAIYDSIQYISAPVATLCMGQASSMGALLLAAGQKGMRYALPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQP GGF GQA+DI+ HA++I++IK+ +N I   + GK    VE  +DRD+ M  +EA
Sbjct: 121 LIHQPLGGFQGQAADIDIHAREIIRIKQEINAIMAHHTGKDMATVEHDMDRDYFMGPAEA 180

Query: 196 CDWGVVDKVLMSRIDIEEK 214
            ++G++D VL +R  +E +
Sbjct: 181 KEYGIIDHVLTTRAGLEGR 199


>gi|46447010|ref|YP_008375.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|67460480|sp|Q6MBE9|CLPP2_PARUW RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|46400651|emb|CAF24100.1| probable ATP-dependent Clp protease proteolytic subunit P
           [Candidatus Protochlamydia amoebophila UWE25]
          Length = 207

 Score =  258 bits (659), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 99/206 (48%), Positives = 149/206 (72%)

Query: 6   CAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF 65
            +        + L P V+E T RGERS DIYSRLLK+RI+F+  +I D +A ++ AQLLF
Sbjct: 1   MSHSSHPRPEMSLTPYVIEDTGRGERSMDIYSRLLKDRIIFIGTEITDQVANVVVAQLLF 60

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L+ E+P+K++ +YINS GG +T+G+AIYDTMQ++   I+T+C+GQAASMG+LLL+AG KG
Sbjct: 61  LKMEDPKKDVHIYINSLGGYITSGLAIYDTMQYLGCDINTYCIGQAASMGALLLTAGTKG 120

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
            RFALPN+RI++HQP GG  G ++D+   A++I+++K+RLN I   +  +  E++    +
Sbjct: 121 KRFALPNSRIMIHQPYGGVGGTSADVALQAKEILELKKRLNHIMADSTRQPLEKIAADSE 180

Query: 186 RDHIMSASEACDWGVVDKVLMSRIDI 211
           RD  MSA EA D+G++D+V++ +   
Sbjct: 181 RDFYMSAVEAKDYGLIDEVVVPKKKT 206


>gi|52842086|ref|YP_095885.1| ATP-dependent Clp protease proteolytic subunit [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|54297778|ref|YP_124147.1| ATP-dependent Clp protease proteolytic subunit [Legionella
           pneumophila str. Paris]
 gi|296107452|ref|YP_003619152.1| Protease subunit of ATP-dependent Clp protease [Legionella
           pneumophila 2300/99 Alcoy]
 gi|67460220|sp|Q5X451|CLPP_LEGPA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|67460230|sp|Q5ZUD9|CLPP_LEGPH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|52629197|gb|AAU27938.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|53751563|emb|CAH12981.1| ATP-dependent Clp protease proteolytic subunit [Legionella
           pneumophila str. Paris]
 gi|295649353|gb|ADG25200.1| Protease subunit of ATP-dependent Clp protease [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 214

 Score =  257 bits (658), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 122/195 (62%), Positives = 162/195 (83%)

Query: 14  VFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQK 73
              GL+PMV+EQT+RGERSYDIYSRLLKERI+F+ G++EDHMA L+ AQLLFLE+ENP+K
Sbjct: 11  NASGLIPMVIEQTSRGERSYDIYSRLLKERIIFLLGEVEDHMANLVVAQLLFLESENPEK 70

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +ISLYINSPGGVVTAG+AIYDTMQFIKP +ST C+GQAAS  +LLL AG +G RF LPN+
Sbjct: 71  DISLYINSPGGVVTAGLAIYDTMQFIKPDVSTLCIGQAASAAALLLCAGAEGKRFCLPNS 130

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           R+++HQP GG+ GQA+DIE HA++ + ++ RLN I  K+  KT +++ +  +RD+ MSA+
Sbjct: 131 RVMIHQPLGGYRGQATDIEIHARETLAVRERLNNIMAKHTKKTPDQIMRDTERDNFMSAT 190

Query: 194 EACDWGVVDKVLMSR 208
           +A ++G++DKVL  R
Sbjct: 191 QAMEYGLIDKVLYDR 205


>gi|56751582|ref|YP_172283.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus
           elongatus PCC 6301]
 gi|81301346|ref|YP_401554.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus
           elongatus PCC 7942]
 gi|18203213|sp|Q9L4P3|CLPP3_SYNE7 RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
           AltName: Full=Endopeptidase Clp 3
 gi|67460443|sp|Q5N1Q7|CLPP2_SYNP6 RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|7106112|emb|CAB75988.1| ATP-dependent Clp protease third proteolytic subunit [Synechococcus
           elongatus PCC 7942]
 gi|56686541|dbj|BAD79763.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus
           elongatus PCC 6301]
 gi|81170227|gb|ABB58567.1| ATP-dependent Clp protease proteolytic subunit ClpP [Synechococcus
           elongatus PCC 7942]
          Length = 199

 Score =  257 bits (658), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 101/198 (51%), Positives = 140/198 (70%), Gaps = 2/198 (1%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
            + +  VP  +  ++  ER  DIY+RL  ERI+F+  ++ D +A  I AQLL+L++E+  
Sbjct: 2   PIGVPSVPYRLPGSSF-ERWIDIYNRLAMERIIFLGQEVTDGLANSIVAQLLYLDSEDSS 60

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K I LYINSPGG VTAGMAIYDTMQ+IK P+ T C+G AASMG+ LL AG KG R ALP+
Sbjct: 61  KPIYLYINSPGGSVTAGMAIYDTMQYIKSPVITICLGLAASMGAFLLCAGSKGKRLALPH 120

Query: 133 ARILLHQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           +RI++HQP GG    QASDIE  A++I++IK+ LN+I     G+  E++EK  DRD+ MS
Sbjct: 121 SRIMIHQPLGGTGRRQASDIEIEAKEILRIKKLLNQIMADRTGQPLEKIEKDTDRDYFMS 180

Query: 192 ASEACDWGVVDKVLMSRI 209
           A EA ++G++D+V+  R 
Sbjct: 181 AEEAREYGLIDQVIAERP 198


>gi|168701667|ref|ZP_02733944.1| ATP-dependent clp protease proteolytic subunit [Gemmata
           obscuriglobus UQM 2246]
          Length = 205

 Score =  257 bits (658), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 108/192 (56%), Positives = 151/192 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+VVE   R ER+YDIYSRLLK+RI+F+ G ++D MA LI AQ+L+L+ E+P+++I
Sbjct: 1   MPLVPIVVESRGREERAYDIYSRLLKDRIIFMQGVVQDDMANLIVAQMLYLQFEDPKRDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG VTAGMAIYDTMQFI   ++T+C+GQAASMG++LL+AG KG R+ALP+AR+
Sbjct: 61  SLYINSPGGSVTAGMAIYDTMQFITCDVATYCIGQAASMGAMLLTAGTKGKRYALPHARV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPS G  G A +I  HA++ ++ K  LN++   +CG+  E++ K  DRD+ MSA EA
Sbjct: 121 MIHQPSAGSEGTAEEILIHAKEFLRTKETLNKLMADHCGQPVEKILKGTDRDNFMSAQEA 180

Query: 196 CDWGVVDKVLMS 207
            ++G++DKVL  
Sbjct: 181 REFGLIDKVLER 192


>gi|269120920|ref|YP_003309097.1| ATP-dependent Clp protease proteolytic subunit ClpP [Sebaldella
           termitidis ATCC 33386]
 gi|268614798|gb|ACZ09166.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sebaldella
           termitidis ATCC 33386]
          Length = 190

 Score =  257 bits (658), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 103/186 (55%), Positives = 149/186 (80%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P+V+E   RGERSYDIYSRLLK+RI+F+ G++ED+MA  I AQLLFL+A++ +K+I++YI
Sbjct: 4   PIVIENDGRGERSYDIYSRLLKDRIIFLGGEVEDNMANSIIAQLLFLDAQDSEKDITIYI 63

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGGV+T+G+AIYDTM+ I   +ST C+GQAASMG+LLL+AG KG R++LPN+RI++HQ
Sbjct: 64  NSPGGVITSGLAIYDTMRHINADVSTVCVGQAASMGALLLAAGTKGKRYSLPNSRIMIHQ 123

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQA+D+   A+++ +IK  +NEI  +  GK  +E+    +RD+ M+A EA ++G
Sbjct: 124 PLGGAQGQATDVLIQAREMERIKTLVNEILSEATGKDIKEIYSDTERDNFMNADEALEYG 183

Query: 200 VVDKVL 205
           ++DKV+
Sbjct: 184 LIDKVI 189


>gi|159477909|ref|XP_001697051.1| catalytic subunit of mitochondrial ClpXP protease [Chlamydomonas
           reinhardtii]
 gi|158274963|gb|EDP00743.1| catalytic subunit of mitochondrial ClpXP protease [Chlamydomonas
           reinhardtii]
          Length = 231

 Score =  257 bits (658), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 118/197 (59%), Positives = 151/197 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
              VP+V+EQT RGER+YDI+SRLLKERIV + G I+D+ +  + AQLLFLE++ P K I
Sbjct: 31  ASYVPIVIEQTTRGERAYDIFSRLLKERIVVINGGIDDNTSNSVVAQLLFLESQAPDKPI 90

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           ++YINSPGGVVTAG+AIYDTMQ+I+ PIST  +GQAASM SLLL+AG KG R +LPN+RI
Sbjct: 91  TMYINSPGGVVTAGLAIYDTMQYIRCPISTLVVGQAASMASLLLAAGAKGQRRSLPNSRI 150

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +LHQP G   GQA+DI   AQ+I+++K  L  +Y+K+ G T E  EKTLDRD  MSA EA
Sbjct: 151 MLHQPLGAAEGQATDIMIRAQEIMRMKETLTSLYIKHTGCTREMAEKTLDRDSFMSAQEA 210

Query: 196 CDWGVVDKVLMSRIDIE 212
            DWG++D++L  R   E
Sbjct: 211 KDWGLIDEILTERPAAE 227


>gi|148359406|ref|YP_001250613.1| ATP-dependent Clp protease proteolytic subunit ClpP [Legionella
           pneumophila str. Corby]
 gi|166201828|sp|A5ID17|CLPP_LEGPC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|148281179|gb|ABQ55267.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Legionella
           pneumophila str. Corby]
          Length = 214

 Score =  257 bits (658), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 122/195 (62%), Positives = 162/195 (83%)

Query: 14  VFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQK 73
              GL+PMV+EQT+RGERSYDIYSRLLKERI+F+ G++EDHMA L+ AQLLFLE+ENP+K
Sbjct: 11  NASGLIPMVIEQTSRGERSYDIYSRLLKERIIFLLGEVEDHMANLVVAQLLFLESENPEK 70

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +ISLYINSPGGVVTAG+AIYDTMQFIKP +ST C+GQAAS  +LLL AG +G RF LPN+
Sbjct: 71  DISLYINSPGGVVTAGLAIYDTMQFIKPDVSTLCIGQAASAAALLLCAGAEGKRFCLPNS 130

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           R+++HQP GG+ GQA+DIE HA++ + ++ RLN I  K+  KT +++ +  +RD+ MSA+
Sbjct: 131 RVMIHQPLGGYRGQATDIEIHARETLAVRERLNNIMAKHTKKTPDQIMRDTERDNFMSAT 190

Query: 194 EACDWGVVDKVLMSR 208
           +A ++G++DKVL  R
Sbjct: 191 QAMEYGLIDKVLYDR 205


>gi|223996651|ref|XP_002287999.1| catalytic subunit of clp protein superfamily [Thalassiosira
           pseudonana CCMP1335]
 gi|220977115|gb|EED95442.1| catalytic subunit of clp protein superfamily [Thalassiosira
           pseudonana CCMP1335]
          Length = 191

 Score =  257 bits (657), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 114/191 (59%), Positives = 150/191 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP+V+E    GER++DIYSRLL+ERI+ V G++ D MA+L+ AQLLFLEAE P+K + +
Sbjct: 1   LVPVVLESGTTGERAFDIYSRLLRERIICVHGEVTDSMASLVTAQLLFLEAEAPEKPVYM 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG+VTAGMA+YDTMQ+I P + T CMGQAASMGSLLL+ G  G RFALPNARI+L
Sbjct: 61  YINSPGGLVTAGMAMYDTMQYIHPEVHTICMGQAASMGSLLLAGGSAGCRFALPNARIML 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  G ASDI+  A++I++ +  LN++YV + G+  EE+E+ +DRD  M   +A D
Sbjct: 121 HQPSGGAQGMASDIDIQAREILRTRANLNQLYVHHTGRELEEIERVMDRDTFMDVRQAVD 180

Query: 198 WGVVDKVLMSR 208
           +GV+D+VL  R
Sbjct: 181 FGVIDEVLTKR 191


>gi|227554886|ref|ZP_03984933.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis HH22]
 gi|257081032|ref|ZP_05575393.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis E1Sol]
 gi|227175979|gb|EEI56951.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis HH22]
 gi|256989062|gb|EEU76364.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis E1Sol]
          Length = 181

 Score =  257 bits (657), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 98/181 (54%), Positives = 140/181 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQ++RGER+YDIYSRLLK+RI+ ++G I+D++A  + AQLLFL+A++ +K+I
Sbjct: 1   MNLIPTVIEQSSRGERAYDIYSRLLKDRIIMLSGPIDDNVANSVIAQLLFLDAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG V+AG+AI+DTM F+K  + T  +G AASMGS LL+AG+KG RFALPNA I
Sbjct: 61  YLYINSPGGSVSAGLAIFDTMNFVKADVQTIVLGMAASMGSFLLTAGQKGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+  ++RLN I  +  G+  E +E+  DRD+ M+A +A
Sbjct: 121 MIHQPLGGAQGQATEIEIAARHILDTRQRLNSILAERTGQPIEVIERDTDRDNYMTAEQA 180

Query: 196 C 196
            
Sbjct: 181 K 181


>gi|241895065|ref|ZP_04782361.1| ATP-dependent Clp protease proteolytic subunit [Weissella
           paramesenteroides ATCC 33313]
 gi|241871783|gb|EER75534.1| ATP-dependent Clp protease proteolytic subunit [Weissella
           paramesenteroides ATCC 33313]
          Length = 197

 Score =  257 bits (657), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 104/195 (53%), Positives = 145/195 (74%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P V+EQ++ GERSYDI+SRLL +RI+ V G+IE  MAT I AQLLFL+A++P K+I
Sbjct: 1   MTPIPYVIEQSSHGERSYDIFSRLLIDRIIMVNGEIESQMATAIIAQLLFLDAQDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG V AGMAIYDTM FI   + T  +G AASM S+L S+G KG RF LPN++ 
Sbjct: 61  YMYINSPGGEVNAGMAIYDTMNFISADVQTITIGLAASMASVLASSGAKGKRFILPNSQF 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQ ++I   A++I+K +++LN+I   N GK +EEVEK  +RDH + A E+
Sbjct: 121 MIHQPSGGAQGQQTEIAIAAEEILKTRKKLNQILADNTGKPFEEVEKDTERDHWLDAEES 180

Query: 196 CDWGVVDKVLMSRID 210
            ++G++DK++ S  D
Sbjct: 181 LEYGLIDKIMTSAKD 195


>gi|294054261|ref|YP_003547919.1| Endopeptidase Clp [Coraliomargarita akajimensis DSM 45221]
 gi|293613594|gb|ADE53749.1| Endopeptidase Clp [Coraliomargarita akajimensis DSM 45221]
          Length = 197

 Score =  257 bits (657), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 100/192 (52%), Positives = 144/192 (75%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            +P V E+  R ER++DIYSRLL++RI+F+   I D +A  + AQ+LFL+ E+P+K+ISL
Sbjct: 5   PLPTVYEREGRTERAWDIYSRLLRDRIIFIGTPINDFVANAVIAQMLFLQMEDPKKDISL 64

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VT GMAIYDTM F++  + T+C+GQAASM +LLL+AG  G R+ALPN+R+++
Sbjct: 65  YINSPGGSVTDGMAIYDTMNFLQCDVVTYCVGQAASMATLLLAAGTPGKRYALPNSRVMM 124

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP+GG +GQ SDI   A++I++ + R+N +   +  KT EEV    DRD  ++A +ACD
Sbjct: 125 HQPTGGATGQTSDISIAAKEILRWRERMNSLIASHTNKTAEEVAADSDRDFYLTAQDACD 184

Query: 198 WGVVDKVLMSRI 209
           +G+VDKV+ S+ 
Sbjct: 185 YGLVDKVIESKP 196


>gi|33519711|ref|NP_878543.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Blochmannia floridanus]
 gi|60389741|sp|Q7VRH1|CLPP_BLOFL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|33504056|emb|CAD83317.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Blochmannia floridanus]
          Length = 209

 Score =  257 bits (657), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 111/209 (53%), Positives = 157/209 (75%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+   +        + ++P VV+QT+RG+R+YDI+S LLKERI+FV G+IE+ MA LI 
Sbjct: 1   MSYLYDSYFQYIHYNVSMIPTVVKQTSRGDRAYDIFSLLLKERIIFVIGKIENFMANLIV 60

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ++FLE+E+P K+I LYINSPGG VTAGM+IYD MQF+KP IST+C+GQAASMG+ LL+
Sbjct: 61  AQIMFLESEDPVKDIHLYINSPGGEVTAGMSIYDIMQFVKPNISTYCIGQAASMGAFLLA 120

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG  G RF LPN+R+++HQP G   GQA+DI  HA +I+K+K  +N++  K+ GK+ + +
Sbjct: 121 AGTTGKRFCLPNSRVMIHQPLGSLHGQATDIAIHATEILKVKENINKLMAKHTGKSIDVI 180

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRI 209
            + ++RD  +SA E+  +G+VD VL  RI
Sbjct: 181 RQDMERDCFLSADESVKYGLVDSVLSKRI 209


>gi|283779543|ref|YP_003370298.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pirellula
           staleyi DSM 6068]
 gi|283437996|gb|ADB16438.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pirellula
           staleyi DSM 6068]
          Length = 205

 Score =  257 bits (656), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 105/192 (54%), Positives = 148/192 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P VVE++ R ER YDIYSRLLK+RI+F+  Q+ D MA  I AQ+LFL++++P+ +I
Sbjct: 1   MPLIPYVVEKSGREERVYDIYSRLLKDRIIFLGTQVNDEMANAIVAQMLFLQSDDPKADI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG ++AGMAIYDTMQF+   ++T+C+GQAASMG++LL+AG  G RFALPNARI
Sbjct: 61  HLYINSPGGSISAGMAIYDTMQFVTCDVATYCIGQAASMGAVLLTAGAPGKRFALPNARI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP  G  G A +I  HA++  +IK+R+NEI +K+ G+  E++E   DRD  MSA+EA
Sbjct: 121 MIHQPLAGMQGTAEEIMIHAKEFRRIKQRMNEIMLKHTGQPMEKIESDTDRDRFMSAAEA 180

Query: 196 CDWGVVDKVLMS 207
            ++ +VDKV+  
Sbjct: 181 AEYRIVDKVIER 192


>gi|329943257|ref|ZP_08292031.1| clp protease family protein [Chlamydophila psittaci Cal10]
 gi|328814804|gb|EGF84794.1| clp protease family protein [Chlamydophila psittaci Cal10]
 gi|328915097|gb|AEB55930.1| Clp protease [Chlamydophila psittaci 6BC]
          Length = 203

 Score =  257 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 99/200 (49%), Positives = 149/200 (74%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP VVE T RGER+ DIYSRLLK+RIV +  +I + +A  + AQLLFL +E+P+K+I
Sbjct: 1   MTLVPYVVEDTGRGERAMDIYSRLLKDRIVMIGQEITEPLANTVIAQLLFLMSEDPKKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            ++INSPGG +TAG+AIYDT++F+   ++T+C+GQAASMG+LLLSAG KG R+ALP++R+
Sbjct: 61  KVFINSPGGYITAGLAIYDTIRFLGCDVNTYCIGQAASMGALLLSAGTKGKRYALPHSRM 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  G ++DI+  A +I+ +K+ L  I  +  G+  E++ +  +RD  M A +A
Sbjct: 121 MIHQPSGGIIGTSADIQLQAAEILTLKKHLANILSECTGQPVEKIIEDSERDFFMGAEDA 180

Query: 196 CDWGVVDKVLMSRIDIEEKS 215
             +G++DKV+ S  D ++K 
Sbjct: 181 ISYGLIDKVVSSAKDTKDKD 200


>gi|327480673|gb|AEA83983.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           stutzeri DSM 4166]
          Length = 192

 Score =  257 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 115/188 (61%), Positives = 152/188 (80%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MV+EQ+ RGER+YDIYSRLLKER++F+ GQ+ED+MA LI AQLLFLEAENP+K+I LYIN
Sbjct: 1   MVIEQSARGERAYDIYSRLLKERVIFMVGQVEDYMANLIVAQLLFLEAENPEKDIHLYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+LLL+ G  G R+ LP++R+++HQP
Sbjct: 61  SPGGSVTAGMSIYDTMQFIKPNVSTICIGQACSMGALLLAGGAAGKRYCLPHSRMMIHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            GGF GQASDIE HA++I+ I+ RLN++   + G+  + + +  DRD+ MS  EA  +G+
Sbjct: 121 LGGFQGQASDIEIHAREILTIRERLNKVLAHHTGQPMDVIARDTDRDNFMSGEEAVKYGL 180

Query: 201 VDKVLMSR 208
           +D+VL  R
Sbjct: 181 IDQVLTQR 188


>gi|15806970|ref|NP_295695.1| ATP-dependent Clp protease proteolytic subunit [Deinococcus
           radiodurans R1]
 gi|18203425|sp|Q9RSZ7|CLPP_DEIRA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|6459760|gb|AAF11524.1|AE002035_7 ATP-dependent Clp protease, proteolytic subunit ClpP [Deinococcus
           radiodurans R1]
          Length = 204

 Score =  257 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 100/192 (52%), Positives = 143/192 (74%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
            + ++P V+EQT RGERSYDIYSRLLK+RI+FV   +E  MA  I AQLL L+++NP++E
Sbjct: 3   VMSVIPYVIEQTGRGERSYDIYSRLLKDRIIFVGTPVESQMANSIVAQLLLLDSQNPEQE 62

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I +YIN PGG V AG+AIYDTM++IK P+ST C+G A SMGS+LL AG+KG R ALPN+R
Sbjct: 63  IQMYINCPGGEVYAGLAIYDTMRYIKAPVSTICVGMAMSMGSVLLMAGDKGKRMALPNSR 122

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQ S GF G   D+E  A++++K++  L +IY K+     E++ + ++RD+ MS  E
Sbjct: 123 IMIHQGSAGFRGNTPDLEVQAKEVLKLRDTLVDIYHKHTDLPQEKLLRDMERDYFMSPEE 182

Query: 195 ACDWGVVDKVLM 206
           A  +G++D+V+ 
Sbjct: 183 ALKYGLIDQVID 194


>gi|160879125|ref|YP_001558093.1| endopeptidase Clp [Clostridium phytofermentans ISDg]
 gi|160427791|gb|ABX41354.1| Endopeptidase Clp [Clostridium phytofermentans ISDg]
          Length = 193

 Score =  257 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 104/192 (54%), Positives = 146/192 (76%), Gaps = 2/192 (1%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + +VP V+EQ +R ERSYDIYSRLLK+RI+F+ G++    A L+ AQLL+LEAE+ +K+I
Sbjct: 1   MSVVPYVIEQNDRSERSYDIYSRLLKDRIIFINGEVNHVSAGLVIAQLLYLEAEDSKKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +  G+AIYDTM+++K  +ST C+G AASMGS LL+ G KG RFALPNA I
Sbjct: 61  RLYINSPGGSIPDGLAIYDTMRYLKCDVSTTCIGMAASMGSFLLAGGTKGKRFALPNAEI 120

Query: 136 LLHQPSGGFS--GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           L+HQPSGG     QA+DI+  ++ I+  +RR+N+I  +N GK   ++EK  DRD+ M+A 
Sbjct: 121 LIHQPSGGIQAPAQATDIDIMSKHILNTRRRVNQILSENTGKEISQIEKDTDRDYYMTAE 180

Query: 194 EACDWGVVDKVL 205
           EA ++G++DK++
Sbjct: 181 EALNYGIIDKII 192


>gi|162451419|ref|YP_001613786.1| endopeptidase Clp [Sorangium cellulosum 'So ce 56']
 gi|161162001|emb|CAN93306.1| Endopeptidase Clp [Sorangium cellulosum 'So ce 56']
          Length = 214

 Score =  257 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 105/193 (54%), Positives = 151/193 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V E T+RGER ++I+SRLLK+RIVF+  +I+D +A  + AQ LFLE+E+P+KEI +
Sbjct: 22  ILPTVTEVTHRGEREWNIFSRLLKDRIVFIGTEIDDFVANAVIAQFLFLESEDPEKEIQV 81

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G+A+YDTMQ+++ P+ST C+GQAASMG++LL AG KG RFALP+AR+++
Sbjct: 82  YINSPGGVVTSGLAMYDTMQYVRCPVSTMCIGQAASMGAVLLGAGRKGRRFALPHARMMI 141

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I KIK  L +I V   GK  +E+ K ++RD  +SA++A +
Sbjct: 142 HQPLGGARGQATDIEIQAREIKKIKETLIDILVDATGKNRDELAKDIERDFYLSATQAKE 201

Query: 198 WGVVDKVLMSRID 210
           +G++D+V   R  
Sbjct: 202 YGLIDEVFPKRNK 214


>gi|320332658|ref|YP_004169369.1| ATP-dependent Clp protease proteolytic subunit [Deinococcus
           maricopensis DSM 21211]
 gi|319753947|gb|ADV65704.1| ATP-dependent Clp protease proteolytic subunit [Deinococcus
           maricopensis DSM 21211]
          Length = 201

 Score =  256 bits (655), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 97/201 (48%), Positives = 147/201 (73%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++P V+EQT RGER YDIYSRLLK+RI+F+   I+  +A  I AQLL L+++NP++EI
Sbjct: 1   MSVIPYVIEQTGRGERMYDIYSRLLKDRIIFLGTPIDSQVANTIVAQLLLLDSQNPEREI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG V AG+AIYDTM++IK P+ST C+G A SMGS++L AG+KG R ALPN+RI
Sbjct: 61  QLYINSPGGEVYAGLAIYDTMRYIKAPVSTICVGIAMSMGSVILMAGDKGKRSALPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQ S GF G   D+E  A++ + ++ RL +IY ++    +E++ + ++RD+ MS  EA
Sbjct: 121 MIHQGSSGFRGNTPDVEVQAKETLYLRDRLVDIYHRHTSLPHEKLLRDMERDYFMSPGEA 180

Query: 196 CDWGVVDKVLMSRIDIEEKSK 216
             +G++D V+    + + +++
Sbjct: 181 QQYGLIDAVIEHTREAQSENE 201


>gi|89897901|ref|YP_515011.1| ATP-dependent Clp protease proteolytic subunit [Chlamydophila felis
           Fe/C-56]
 gi|116243099|sp|Q256C2|CLPP1_CHLFF RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|89331273|dbj|BAE80866.1| ATP-dependent Clp endopeptidase, ATP-binding proteolytic subunit 2
           [Chlamydophila felis Fe/C-56]
          Length = 203

 Score =  256 bits (655), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 100/200 (50%), Positives = 149/200 (74%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP VVE T RGER+ DIYSRLLK+RIV +  +I + +A  + AQLLFL +E+PQK+I
Sbjct: 1   MTLVPYVVEDTGRGERAMDIYSRLLKDRIVMIGQEITEPLANTVIAQLLFLMSEDPQKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            ++INSPGG +TAG+AIYDT++F+   ++T+C+GQAASMG+LLLSAG KG R+ALP++R+
Sbjct: 61  KVFINSPGGYITAGLAIYDTIRFLGCDVNTYCIGQAASMGALLLSAGTKGKRYALPHSRM 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  G ++DI+  A +I+ +K+ L  I  +  G+  E++ +  +RD  M A +A
Sbjct: 121 MIHQPSGGIIGTSADIQLQAAEILTLKKHLANILSECTGQPVEKIIEDSERDFFMGAEDA 180

Query: 196 CDWGVVDKVLMSRIDIEEKS 215
             +G++DKV+ S  D ++K 
Sbjct: 181 ISYGLIDKVVSSAKDTKDKD 200


>gi|73748509|ref|YP_307748.1| ATP-dependent Clp protease proteolytic subunit [Dehalococcoides sp.
           CBDB1]
 gi|147669290|ref|YP_001214108.1| endopeptidase Clp [Dehalococcoides sp. BAV1]
 gi|289432557|ref|YP_003462430.1| endopeptidase Clp [Dehalococcoides sp. GT]
 gi|115311356|sp|Q3ZX82|CLPP_DEHSC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|189082455|sp|A5FRE5|CLPP_DEHSB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|73660225|emb|CAI82832.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Dehalococcoides sp. CBDB1]
 gi|146270238|gb|ABQ17230.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Dehalococcoides sp. BAV1]
 gi|288946277|gb|ADC73974.1| Endopeptidase Clp [Dehalococcoides sp. GT]
          Length = 200

 Score =  256 bits (655), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 104/191 (54%), Positives = 146/191 (76%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            +VPMV+E + RGER++DIYS LLKERI+F+  QI D +A L+ AQLLFL+ E+P K+IS
Sbjct: 6   NVVPMVIESSARGERAFDIYSLLLKERIIFLGSQINDQVANLVIAQLLFLDREDPDKDIS 65

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYI+SPGGV++AG+A+YDTMQ I+P +ST C+G AASM ++LL AG KG R+ALPNA I 
Sbjct: 66  LYIHSPGGVISAGLAMYDTMQLIRPKVSTICVGVAASMATVLLCAGAKGKRYALPNATIH 125

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQ  GG  GQASDIE  A++I++ +  L  I VK+ G+T E++    DRD+ +SA +A 
Sbjct: 126 MHQAMGGAQGQASDIEIAAREIMRQQDILRNILVKHTGQTMEKIVHDSDRDYYLSAQQAV 185

Query: 197 DWGVVDKVLMS 207
           ++G++D++L  
Sbjct: 186 EYGLIDEILQK 196


>gi|300813057|ref|ZP_07093435.1| Clp protease [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|313123331|ref|YP_004033590.1| ATP-dependent clp protease proteolytic subunit [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|300495898|gb|EFK31042.1| Clp protease [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|312279894|gb|ADQ60613.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 194

 Score =  256 bits (655), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 104/190 (54%), Positives = 149/190 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQT RGER+YDIYSRLLK+RI+ ++G++ D MA  I AQLLFL+A++  K+I +
Sbjct: 2   LVPTVIEQTARGERAYDIYSRLLKDRIIMLSGEVNDQMANSIIAQLLFLDAQDNTKDIYM 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+T+GMAI DTM FIK P+ST   G AASM S++L+ GEKG RFALP+A +L+
Sbjct: 62  YINSPGGVITSGMAIVDTMNFIKSPVSTIATGMAASMASIILAEGEKGKRFALPHATVLI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA++I+  A++I+K ++ +NEI  K+ G+  E +++  +RDH M+A EA D
Sbjct: 122 HQPLGGAQGQATEIQIAAEEILKTRKMINEILAKDSGQDIETIKRDTERDHYMTAQEAKD 181

Query: 198 WGVVDKVLMS 207
           +G++D ++++
Sbjct: 182 YGLIDDIMVN 191


>gi|257126078|ref|YP_003164192.1| ATP-dependent Clp protease proteolytic subunit ClpP [Leptotrichia
           buccalis C-1013-b]
 gi|257050017|gb|ACV39201.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Leptotrichia
           buccalis C-1013-b]
          Length = 203

 Score =  256 bits (655), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 106/186 (56%), Positives = 149/186 (80%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P+V+E   RGERSYDIYSRLLK+RI+FV+G++ED MA  I AQLLFL+A++ +K+I +YI
Sbjct: 18  PVVIENDGRGERSYDIYSRLLKDRIIFVSGEVEDGMANAIVAQLLFLDAQDNEKDIVMYI 77

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGGV+TAG+AIYDTM+ IK  +ST C+GQAASMG++LLSAG KG R++LPN+RI++HQ
Sbjct: 78  NSPGGVITAGLAIYDTMRHIKSDVSTVCVGQAASMGAVLLSAGAKGKRYSLPNSRIMIHQ 137

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQA+DI+  A++I ++K   ++I  +  GK+ EE+    +RD+ MS  EA ++G
Sbjct: 138 PLGGARGQATDIQIQAKEIERMKEITSKILSEATGKSVEEIYADTERDNFMSPEEAVNYG 197

Query: 200 VVDKVL 205
           ++DK+L
Sbjct: 198 LIDKIL 203


>gi|186681465|ref|YP_001864661.1| ATP-dependent Clp protease proteolytic subunit [Nostoc punctiforme
           PCC 73102]
 gi|186463917|gb|ACC79718.1| peptidase S14, ClpP [Nostoc punctiforme PCC 73102]
          Length = 203

 Score =  256 bits (655), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 99/195 (50%), Positives = 140/195 (71%), Gaps = 2/195 (1%)

Query: 19  VPMVVEQTNRGE--RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +   G+      IY RL +ERI+F+   I+D +A  I A +L+L++++P K+I 
Sbjct: 5   VPKVPYRMPGGQYTDWISIYDRLYRERIIFLGRDIDDEIANQIIAVMLYLDSDDPGKDIY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG+VT+GMAI+DTMQ IK  + T C+G AASMGS LL+AG KG R ALP++RI+
Sbjct: 65  LYINSPGGMVTSGMAIFDTMQHIKSDVVTICVGLAASMGSFLLAAGTKGKRLALPHSRIM 124

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  GQA+DIE  A++I++I+ +LN IY    G+T  ++EK +DRD  MSA EA 
Sbjct: 125 IHQPSGGTRGQATDIEIEAREILRIRHQLNGIYADKTGQTIAKIEKDMDRDFFMSAEEAK 184

Query: 197 DWGVVDKVLMSRIDI 211
           ++G++D+V+  R  I
Sbjct: 185 EYGLIDRVIEERTSI 199


>gi|126700971|ref|YP_001089868.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile 630]
 gi|254976933|ref|ZP_05273405.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile QCD-66c26]
 gi|255094319|ref|ZP_05323797.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile CIP 107932]
 gi|255102503|ref|ZP_05331480.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile QCD-63q42]
 gi|255308399|ref|ZP_05352570.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile ATCC 43255]
 gi|255316073|ref|ZP_05357656.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile QCD-76w55]
 gi|255518732|ref|ZP_05386408.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile QCD-97b34]
 gi|255651852|ref|ZP_05398754.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile QCD-37x79]
 gi|260684879|ref|YP_003216164.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile CD196]
 gi|260688537|ref|YP_003219671.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile R20291]
 gi|306521636|ref|ZP_07407983.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile QCD-32g58]
 gi|115252408|emb|CAJ70250.1| ATP-dependent Clp protease proteolytic subunit 2 (Endopeptidase Clp
           2) [Clostridium difficile]
 gi|260211042|emb|CBA66381.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile CD196]
 gi|260214554|emb|CBE07092.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile R20291]
          Length = 194

 Score =  256 bits (655), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 98/192 (51%), Positives = 144/192 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT +GERSYDIYS+LLK+RI+F+  +I D +A+L+ AQLLFLE+E+P  +I
Sbjct: 1   MSLVPHVIEQTGQGERSYDIYSKLLKDRIIFIGEEINDAIASLVVAQLLFLESEDPDSDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG  T+G AIYDTM +++  +ST C+G AASM + LL+ G  G R ALPN+ I
Sbjct: 61  IIYINSPGGSATSGFAIYDTMNYVRCDVSTICIGMAASMSAFLLAGGTHGKRCALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+D++    +I+KIK RL++I  +N GK+ E++ +  DRD+ M+A EA
Sbjct: 121 MIHQPMGGAKGQATDVKIAVDNILKIKERLDKILSENTGKSIEDIRRDTDRDNFMTALEA 180

Query: 196 CDWGVVDKVLMS 207
            ++G++D ++  
Sbjct: 181 KEYGLIDYIMNR 192


>gi|104773729|ref|YP_618709.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116243144|sp|Q1GB31|CLPP_LACDA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|103422810|emb|CAI97454.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 194

 Score =  256 bits (655), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 104/190 (54%), Positives = 148/190 (77%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQT RGER+YDIYSRLLK+RI+ ++G + D MA  I AQLLFL+A++  K+I +
Sbjct: 2   LVPTVIEQTARGERAYDIYSRLLKDRIIMLSGDVNDQMANSIIAQLLFLDAQDNTKDIYM 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+T+GMAI DTM FIK P+ST   G AASM S++L+ GEKG RFALP+A +L+
Sbjct: 62  YINSPGGVITSGMAIVDTMNFIKSPVSTIATGMAASMASIILAEGEKGKRFALPHATVLI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA++I+  A++I+K ++ +NEI  K+ G+  E +++  +RDH M+A EA D
Sbjct: 122 HQPLGGAQGQATEIQIAAEEILKTRKMINEILAKDSGQDIETIKRDTERDHYMTAQEAKD 181

Query: 198 WGVVDKVLMS 207
           +G++D ++++
Sbjct: 182 YGLIDNIMVN 191


>gi|57234482|ref|YP_181451.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Dehalococcoides ethenogenes 195]
 gi|270308033|ref|YP_003330091.1| ATP-dependent Clp protease, proteolytic subunit [Dehalococcoides
           sp. VS]
 gi|115311355|sp|Q3Z8J8|CLPP_DEHE1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|57224930|gb|AAW39987.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Dehalococcoides ethenogenes 195]
 gi|270153925|gb|ACZ61763.1| ATP-dependent Clp protease, proteolytic subunit [Dehalococcoides
           sp. VS]
          Length = 200

 Score =  256 bits (655), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 102/191 (53%), Positives = 145/191 (75%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            +VPMV+E + RGER++DIYS LLKERI+F+  QI D +A L+ AQLLFL+ E+P K+IS
Sbjct: 6   NVVPMVIESSARGERAFDIYSLLLKERIIFLGSQINDQVANLVIAQLLFLDREDPDKDIS 65

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYI+SPGGV++AG+A+YDTMQ I+P +ST C+G AASM ++LL AG KG R+ALPNA I 
Sbjct: 66  LYIHSPGGVISAGLAMYDTMQLIRPKVSTICVGVAASMATVLLCAGAKGKRYALPNATIH 125

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQ  GG  GQASDIE  A++I++ +  L  I VK+ G+  E++    DRD+ ++A +A 
Sbjct: 126 MHQAMGGAQGQASDIEIAAREIMRQQDILRNILVKHTGQPMEKIIHDSDRDYYLNAQQAV 185

Query: 197 DWGVVDKVLMS 207
           ++G++D++L  
Sbjct: 186 EYGLIDEILQK 196


>gi|15618756|ref|NP_225042.1| ATP-dependent Clp protease proteolytic subunit [Chlamydophila
           pneumoniae CWL029]
 gi|15836380|ref|NP_300904.1| ATP-dependent Clp protease proteolytic subunit [Chlamydophila
           pneumoniae J138]
 gi|16752192|ref|NP_445559.1| ATP-dependent Clp protease proteolytic subunit [Chlamydophila
           pneumoniae AR39]
 gi|33242207|ref|NP_877148.1| ATP-dependent Clp protease proteolytic subunit [Chlamydophila
           pneumoniae TW-183]
 gi|6831514|sp|Q9Z759|CLPP2_CHLPN RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|4377162|gb|AAD18985.1| CLP Protease Subunit [Chlamydophila pneumoniae CWL029]
 gi|7189935|gb|AAF38798.1| ATP-dependent Clp protease, proteolytic subunit [Chlamydophila
           pneumoniae AR39]
 gi|8979221|dbj|BAA99055.1| CLP protease subunit [Chlamydophila pneumoniae J138]
 gi|33236718|gb|AAP98805.1| ATP-dependent clp protease proteolytic subunit [Chlamydophila
           pneumoniae TW-183]
 gi|269302633|gb|ACZ32733.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP
           [Chlamydophila pneumoniae LPCoLN]
          Length = 203

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 98/200 (49%), Positives = 147/200 (73%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP VVE T RGER+ DIYSRLLK+RIV +  +I + +A  + AQLLFL +E+P+K+I
Sbjct: 1   MTLVPYVVEDTGRGERAMDIYSRLLKDRIVMIGQEITEPLANTVIAQLLFLMSEDPKKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            ++INSPGG +TAG+AIYDT++F+   ++T+C+GQAASMG+LLLSAG KG R ALP++R+
Sbjct: 61  QIFINSPGGYITAGLAIYDTIRFLGCDVNTYCIGQAASMGALLLSAGTKGKRHALPHSRM 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  G ++DI+  A +I+ +K+ L  I  +  G+  E++ +  +RD  M A EA
Sbjct: 121 MIHQPSGGIIGTSADIQLQAAEILTLKKHLANILSECTGQPVEKIIEDSERDFFMGAEEA 180

Query: 196 CDWGVVDKVLMSRIDIEEKS 215
             +G++DKV+ S  +  + +
Sbjct: 181 ISYGLIDKVVTSAKETNKDT 200


>gi|257468340|ref|ZP_05632434.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           ulcerans ATCC 49185]
 gi|317062614|ref|ZP_07927099.1| endopeptidase Clp [Fusobacterium ulcerans ATCC 49185]
 gi|313688290|gb|EFS25125.1| endopeptidase Clp [Fusobacterium ulcerans ATCC 49185]
          Length = 191

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 108/188 (57%), Positives = 145/188 (77%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P VVE T R ER+YDIYSRLLK+RI+F+  +I+D++A  I AQLLFLEAE+P K+I +YI
Sbjct: 4   PTVVESTGRSERAYDIYSRLLKDRIIFLGTEIDDNVANAIVAQLLFLEAEDPDKDIIMYI 63

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGGVVTAGMAIYDTM +IKP + T C+GQAASMG+LLL AG KG R+AL ++RI++HQ
Sbjct: 64  NSPGGVVTAGMAIYDTMNYIKPDVQTVCIGQAASMGALLLGAGAKGKRYALEHSRIMIHQ 123

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQA+DIE  A++I+++K  L++I     GK+  E+    +RD+ MSA EA ++G
Sbjct: 124 PLGGARGQATDIEIQAKEILRMKEMLSQIMADCTGKSLSEILNDTERDNYMSAEEAKNYG 183

Query: 200 VVDKVLMS 207
           ++D+V   
Sbjct: 184 LIDQVFKK 191


>gi|54294748|ref|YP_127163.1| ATP-dependent Clp protease proteolytic subunit [Legionella
           pneumophila str. Lens]
 gi|67460216|sp|Q5WVJ0|CLPP_LEGPL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|53754580|emb|CAH16064.1| ATP-dependent Clp protease proteolytic subunit [Legionella
           pneumophila str. Lens]
 gi|307610564|emb|CBX00152.1| ATP-dependent Clp protease proteolytic subunit [Legionella
           pneumophila 130b]
          Length = 214

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 122/195 (62%), Positives = 161/195 (82%)

Query: 14  VFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQK 73
              GL+PMV+EQT+RGERSYDIYSRLLKERI+F+ G++EDHMA L+ AQLLFLE+ENP+K
Sbjct: 11  NASGLIPMVIEQTSRGERSYDIYSRLLKERIIFLLGEVEDHMANLVVAQLLFLESENPEK 70

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +ISLYINSPGGVVTAG+AIYDTMQFIKP +ST C+GQAAS  +LLL AG  G RF LPN+
Sbjct: 71  DISLYINSPGGVVTAGLAIYDTMQFIKPDVSTLCIGQAASAAALLLCAGADGKRFCLPNS 130

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           R+++HQP GG+ GQA+DIE HA++ + ++ RLN I  K+  KT +++ +  +RD+ MSA+
Sbjct: 131 RVMIHQPLGGYRGQATDIEIHARETLAVRERLNNIMAKHTKKTPDQIMRDTERDNFMSAT 190

Query: 194 EACDWGVVDKVLMSR 208
           +A ++G++DKVL  R
Sbjct: 191 QAMEYGLIDKVLYDR 205


>gi|67921362|ref|ZP_00514880.1| Peptidase S14, ClpP [Crocosphaera watsonii WH 8501]
 gi|67856474|gb|EAM51715.1| Peptidase S14, ClpP [Crocosphaera watsonii WH 8501]
          Length = 200

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 99/198 (50%), Positives = 141/198 (71%), Gaps = 3/198 (1%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
            + +  VP  +  +   ER  DIY+RL +ERI+F+  ++ D +A  I A LL+L++++P 
Sbjct: 2   PIGVPSVPYRLPGSQY-ERWIDIYTRLGQERIIFLGQEVSDGIANRIVALLLYLDSDDPN 60

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K I LYINSPGG VTAGMAIYDTMQ+IK  + T C+G AASMGS LL+AG  G R ALP+
Sbjct: 61  KPIYLYINSPGGSVTAGMAIYDTMQYIKSEVITICVGLAASMGSFLLAAGTPGKRLALPH 120

Query: 133 ARILLHQPSGGFSG--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           ARI++HQP GG  G  QA+DIE  A +I++I+ +LN++    CG++ E++EK  DRD+ M
Sbjct: 121 ARIMIHQPLGGTGGRRQATDIEIEANEILRIRAQLNQLLADQCGQSLEKIEKDTDRDYFM 180

Query: 191 SASEACDWGVVDKVLMSR 208
           SA EA ++G++DKV+  +
Sbjct: 181 SAEEAKEYGLIDKVIDEK 198


>gi|160871940|ref|ZP_02062072.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rickettsiella
           grylli]
 gi|159120739|gb|EDP46077.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rickettsiella
           grylli]
          Length = 220

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 120/198 (60%), Positives = 155/198 (78%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQT RGER+YDIYSRLLK+RI+FV G IEDHMA LI AQ+LFLE+ENP K+ISL
Sbjct: 15  LVPMVVEQTGRGERAYDIYSRLLKDRIIFVVGPIEDHMANLIIAQMLFLESENPDKDISL 74

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVVT+G+AIYDTMQFIKP +ST C+GQAAS  +LLL  G KG R  LP+AR+++
Sbjct: 75  YINSPGGVVTSGLAIYDTMQFIKPDVSTMCIGQAASAAALLLCGGTKGKRHCLPHARMMI 134

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG+ GQA+DIE H ++++ ++ R+N I  K+ GK  E++ +  DRD+ M A +A D
Sbjct: 135 HQPLGGYQGQATDIEIHTREMLLVRERINSIMSKHTGKNTEQILRDTDRDNFMGAQQAID 194

Query: 198 WGVVDKVLMSRIDIEEKS 215
           +G++D VL  R +   + 
Sbjct: 195 YGLIDAVLTMRSEERARE 212


>gi|325684491|gb|EGD26655.1| ATP-dependent Clp protease, protease subunit [Lactobacillus
           delbrueckii subsp. lactis DSM 20072]
          Length = 205

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 104/192 (54%), Positives = 150/192 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT RGER+YDIYSRLLK+RI+ ++G++ D MA  I AQLLFL+A++  K+I
Sbjct: 11  IMLVPTVIEQTARGERAYDIYSRLLKDRIIMLSGEVNDQMANSIIAQLLFLDAQDNTKDI 70

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGV+T+GMAI DTM FIK P+ST   G AASM S++L+ GEKG RFALP+A +
Sbjct: 71  YMYINSPGGVITSGMAIVDTMNFIKSPVSTIATGMAASMASIILAEGEKGKRFALPHATV 130

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQP GG  GQA++I+  A++I+K ++ +NEI  K+ G+  E +++  +RDH M+A EA
Sbjct: 131 LIHQPLGGAQGQATEIQIAAEEILKTRKMINEILAKDSGQDIETIKRDTERDHYMTAQEA 190

Query: 196 CDWGVVDKVLMS 207
            D+G++D ++++
Sbjct: 191 KDYGLIDDIMVN 202


>gi|172036826|ref|YP_001803327.1| ATP-dependent Clp protease proteolytic subunit [Cyanothece sp. ATCC
           51142]
 gi|171698280|gb|ACB51261.1| ATP-dependent Clp protease, proteolytic subunit [Cyanothece sp.
           ATCC 51142]
          Length = 199

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 102/197 (51%), Positives = 140/197 (71%), Gaps = 2/197 (1%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
            + +  VP  +  +   ER  DIY+RL +ERI+F+  ++ D +A  I A LL+L++E+P 
Sbjct: 2   PIGVPSVPYRLPGSQY-ERWIDIYTRLGQERIIFLGQEVNDAIANRIVALLLYLDSEDPS 60

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K I LYINSPGG VTAGMAIYDTMQ+IK  + T C+G AASMGS LL+AG  G R ALP+
Sbjct: 61  KPIYLYINSPGGSVTAGMAIYDTMQYIKSEVITICVGLAASMGSFLLAAGTPGKRLALPH 120

Query: 133 ARILLHQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           ARI++HQP GG    QASDIE  A +I++I+ +LN+I    CG++ E++EK  DRD+ MS
Sbjct: 121 ARIMIHQPMGGTGRRQASDIEIEANEILRIRAQLNQILADKCGQSLEKIEKDTDRDYFMS 180

Query: 192 ASEACDWGVVDKVLMSR 208
           A EA ++G++DKV+  R
Sbjct: 181 AEEAKEYGLIDKVIEER 197


>gi|116513727|ref|YP_812633.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|122275503|sp|Q04BH7|CLPP_LACDB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|116093042|gb|ABJ58195.1| ATP-dependent Clp protease proteolytic subunit ClpP [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|325125381|gb|ADY84711.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           delbrueckii subsp. bulgaricus 2038]
          Length = 194

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 104/190 (54%), Positives = 148/190 (77%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQT RGER+YDIYSRLLK+RI+ ++G + D MA  I AQLLFL+A++  K+I +
Sbjct: 2   LVPTVIEQTARGERAYDIYSRLLKDRIIMLSGDVNDQMANSIIAQLLFLDAQDNTKDIYM 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+T+GMAI DTM FIK P+ST   G AASM S++L+ GEKG RFALP+A +L+
Sbjct: 62  YINSPGGVITSGMAIVDTMNFIKSPVSTIATGMAASMASIILAEGEKGKRFALPHATVLI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA++I+  A++I+K ++ +NEI  K+ G+  E +++  +RDH M+A EA D
Sbjct: 122 HQPLGGAQGQATEIQIAAEEILKTRKMINEILAKDSGQDIETIKRDTERDHYMTAQEAKD 181

Query: 198 WGVVDKVLMS 207
           +G++D ++++
Sbjct: 182 YGLIDDIMVN 191


>gi|37523335|ref|NP_926712.1| ATP-dependent Clp protease proteolytic subunit [Gloeobacter
           violaceus PCC 7421]
 gi|60389714|sp|Q7NEW2|CLPP1_GLOVI RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|35214339|dbj|BAC91707.1| clpP [Gloeobacter violaceus PCC 7421]
          Length = 197

 Score =  255 bits (653), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 89/192 (46%), Positives = 137/192 (71%), Gaps = 1/192 (0%)

Query: 19  VPMVVEQTNRGERSY-DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +P V  +   G+  + DI++RL  +RI+F+  +++D +A  I A +L+L++E+P+K+I L
Sbjct: 5   IPKVPYRLPGGQSQWIDIFNRLALDRIIFLGREVDDEIANAIIASMLYLDSEDPEKDIFL 64

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG+AIYDTMQ ++  ++T C+G AASMGS LL+AG KG R +LP++RI++
Sbjct: 65  YINSPGGSVSAGLAIYDTMQHVRADVATMCVGLAASMGSFLLTAGAKGKRTSLPHSRIMI 124

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DI   A++I+  K RLN+I  +  G+  E +E+  DRD  MSA +A  
Sbjct: 125 HQPLGGAQGQATDIGIQAKEILYTKDRLNQILSERTGQPLERIERDTDRDFFMSAEDAKQ 184

Query: 198 WGVVDKVLMSRI 209
           +G++D+V+  R 
Sbjct: 185 YGLIDQVVQHRP 196


>gi|62185490|ref|YP_220275.1| ATP-dependent Clp protease proteolytic subunit [Chlamydophila
           abortus S26/3]
 gi|81312362|sp|Q5L4W7|CLPP2_CHLAB RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|62148557|emb|CAH64328.1| ATP-dependent Clp protease proteolytic subunit [Chlamydophila
           abortus S26/3]
 gi|313848408|emb|CBY17412.1| ATP-dependent Clp protease proteolytic subunit [Chlamydophila
           psittaci RD1]
          Length = 205

 Score =  255 bits (653), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 99/200 (49%), Positives = 149/200 (74%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP VVE T RGER+ DIYSRLLK+RIV +  +I + +A  + AQLLFL +E+P+K+I
Sbjct: 3   MTLVPYVVEDTGRGERAMDIYSRLLKDRIVMIGQEITEPLANTVIAQLLFLMSEDPKKDI 62

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            ++INSPGG +TAG+AIYDT++F+   ++T+C+GQAASMG+LLLSAG KG R+ALP++R+
Sbjct: 63  KVFINSPGGYITAGLAIYDTIRFLGCDVNTYCIGQAASMGALLLSAGTKGKRYALPHSRM 122

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  G ++DI+  A +I+ +K+ L  I  +  G+  E++ +  +RD  M A +A
Sbjct: 123 MIHQPSGGIIGTSADIQLQAAEILTLKKHLANILSECTGQPVEKIIEDSERDFFMGAEDA 182

Query: 196 CDWGVVDKVLMSRIDIEEKS 215
             +G++DKV+ S  D ++K 
Sbjct: 183 ISYGLIDKVVSSAKDTKDKD 202


>gi|295100804|emb|CBK98349.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Faecalibacterium prausnitzii L2-6]
          Length = 199

 Score =  255 bits (653), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 102/199 (51%), Positives = 148/199 (74%), Gaps = 6/199 (3%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP VVEQ+  GERSYDI+SRLL +RI+ ++  + D  A+L+ AQLL+LE ++P K+I
Sbjct: 1   MSFVPYVVEQSAHGERSYDIFSRLLNDRIIVLSEDVNDTSASLVVAQLLYLEGQDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG ++AGMAI+DT+Q+IK  +ST CMG AASMG+ LL++G KG RFALPNA I
Sbjct: 61  SLYINSPGGSISAGMAIHDTIQYIKCDVSTICMGMAASMGAFLLASGTKGKRFALPNAEI 120

Query: 136 LLHQP------SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           ++HQP       GG SGQA+DI+ HA  I++ + ++N +  +  G+  E+VE+  +RD+ 
Sbjct: 121 MIHQPLIAGGQGGGLSGQATDIKIHADHIIRTRAKMNRLLSEYTGQPLEKVEQDTERDNF 180

Query: 190 MSASEACDWGVVDKVLMSR 208
           +SA EA ++G++D+V+  R
Sbjct: 181 LSAQEAKEYGLIDEVITHR 199


>gi|260889843|ref|ZP_05901106.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Leptotrichia
           hofstadii F0254]
 gi|260860449|gb|EEX74949.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Leptotrichia
           hofstadii F0254]
          Length = 208

 Score =  255 bits (653), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 105/186 (56%), Positives = 149/186 (80%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P+V+E   RGERSYDIYSRLLK+RI+FV+G++ED MA  I AQLLFL+A++ +K+I +YI
Sbjct: 23  PVVIENDGRGERSYDIYSRLLKDRIIFVSGEVEDGMANAIVAQLLFLDAQDNEKDIVMYI 82

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGGV+TAG+AIYDTM+ IK  +ST C+GQAASMG++LL+AG KG R++LPN+RI++HQ
Sbjct: 83  NSPGGVITAGLAIYDTMRHIKSDVSTVCVGQAASMGAVLLAAGAKGKRYSLPNSRIMIHQ 142

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQA+DI+  A++I ++K   ++I  +  GK+ EE+    +RD+ MS  EA ++G
Sbjct: 143 PLGGARGQATDIQIQAKEIERMKEITSKILSEATGKSVEEIYADTERDNFMSPEEAVNYG 202

Query: 200 VVDKVL 205
           ++DK+L
Sbjct: 203 LIDKIL 208


>gi|332181312|gb|AEE17000.1| ATP-dependent Clp protease proteolytic subunit [Treponema
           brennaborense DSM 12168]
          Length = 204

 Score =  255 bits (652), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 103/193 (53%), Positives = 145/193 (75%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVP V+EQT+ GERSYDI+SRLLK+RIVF+ G+I D  A LI AQ+LFL+++N +K+IS
Sbjct: 7   NLVPYVIEQTSNGERSYDIFSRLLKDRIVFIDGEITDMTADLIVAQILFLDSQNSEKDIS 66

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAG+AIYDT+Q +K    T C+GQAASM ++LL+ G  G R+ALP++R++
Sbjct: 67  LYINSPGGSVTAGLAIYDTIQSVKCDTQTICVGQAASMAAILLAGGTAGKRYALPSSRVM 126

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQASDI   A++I+++K+   + +  + GKT E V   ++RD  MS+ EA 
Sbjct: 127 IHQPWGGVQGQASDIAIQAKEIIRLKKLTIDYFASHTGKTAETVAADMERDLYMSSDEAL 186

Query: 197 DWGVVDKVLMSRI 209
            +G+VD+++  R 
Sbjct: 187 AYGIVDQIMPRRT 199


>gi|320102927|ref|YP_004178518.1| ATP-dependent Clp protease proteolytic subunit ClpP [Isosphaera
           pallida ATCC 43644]
 gi|319750209|gb|ADV61969.1| ATP-dependent Clp protease proteolytic subunit ClpP [Isosphaera
           pallida ATCC 43644]
          Length = 198

 Score =  255 bits (652), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 89/192 (46%), Positives = 139/192 (72%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP+V+E +   ER  DIYSRLL++RI+ +   I++ ++  + AQLL+L +E+P+ +I
Sbjct: 1   MPRVPVVIEGSGPDERVIDIYSRLLRDRIIILGTAIDESVSNSVVAQLLYLASEDPKADI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG+AIYD MQ +   ++T+C+GQ ASMGSLLL+AG  G R A+P+ RI
Sbjct: 61  RLYINSPGGSVTAGLAIYDMMQSVPCDVATYCIGQCASMGSLLLAAGAAGKRHAMPHGRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP  G  G A+DI  HA++ +++K++LN IY  + G++ E++E+  DRD  MS  EA
Sbjct: 121 MIHQPLAGMEGTATDIMIHAEEFLRMKKQLNGIYNHHTGQSLEKLEQDTDRDRFMSPREA 180

Query: 196 CDWGVVDKVLMS 207
            ++G++D +++ 
Sbjct: 181 KEYGLIDHIVVH 192


>gi|253581496|ref|ZP_04858721.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           varium ATCC 27725]
 gi|251836566|gb|EES65101.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           varium ATCC 27725]
          Length = 191

 Score =  255 bits (652), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 107/188 (56%), Positives = 145/188 (77%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P VVE T R ER+YDIYSRLLK+RI+F+  +I+D++A  I AQLLFLEAE+P K+I +YI
Sbjct: 4   PTVVESTGRSERAYDIYSRLLKDRIIFLGTEIDDNVANAIVAQLLFLEAEDPDKDIIMYI 63

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGGVVTAGMAIYDTM +IKP + T C+GQAASMG+LLL AG +G R+AL ++RI++HQ
Sbjct: 64  NSPGGVVTAGMAIYDTMNYIKPDVQTVCIGQAASMGALLLGAGARGKRYALEHSRIMIHQ 123

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQA+DIE  A++I+++K  L++I     GK+  E+    +RD+ MSA EA ++G
Sbjct: 124 PLGGARGQATDIEIQAKEILRMKEMLSQILADCTGKSLSEIITDTERDNYMSAEEAKNYG 183

Query: 200 VVDKVLMS 207
           ++D+V   
Sbjct: 184 LIDQVFKK 191


>gi|17231849|ref|NP_488397.1| ATP-dependent Clp protease proteolytic subunit [Nostoc sp. PCC
           7120]
 gi|21759069|sp|Q8YP43|CLPP3_ANASP RecName: Full=Probable ATP-dependent Clp protease proteolytic
           subunit 3; AltName: Full=Endopeptidase Clp 3
 gi|17133493|dbj|BAB76056.1| ATP-dependent Clp protease proteolytic subunit [Nostoc sp. PCC
           7120]
          Length = 197

 Score =  255 bits (651), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 97/193 (50%), Positives = 140/193 (72%), Gaps = 2/193 (1%)

Query: 19  VPMVVEQTNRGE--RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +   G+      IY RL +ERI+F+   ++D +A  I A +L+L++E+P K+I 
Sbjct: 5   VPKVPYRMPGGQFTDWISIYDRLYRERIIFLGRDVDDEIANQIIAVMLYLDSEDPGKDIY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG+VT+G+AIYDTMQ IK  + T C+G AASMGS LL+AG KG R ALP++RI+
Sbjct: 65  LYINSPGGMVTSGLAIYDTMQHIKSDVVTICVGLAASMGSFLLAAGTKGKRMALPHSRIM 124

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  GQA+DIE  A++I++I+ +LN+IY  N  +   ++EK +DRD  MSA EA 
Sbjct: 125 IHQPSGGTRGQATDIEIEAREILRIRHQLNQIYANNTSQPLAKIEKDMDRDFFMSAQEAM 184

Query: 197 DWGVVDKVLMSRI 209
           ++G++D+V+  R+
Sbjct: 185 EYGLIDRVIEERV 197


>gi|119493580|ref|ZP_01624244.1| ATP-dependent Clp protease proteolytic subunit [Lyngbya sp. PCC
           8106]
 gi|119452570|gb|EAW33753.1| ATP-dependent Clp protease proteolytic subunit [Lyngbya sp. PCC
           8106]
          Length = 198

 Score =  255 bits (651), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 97/197 (49%), Positives = 140/197 (71%), Gaps = 1/197 (0%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
            + +  VP  +  +   ER  DIY+RL +ERI+F+  ++ D +A  I A +L+L++++P 
Sbjct: 2   PIGVPSVPYRLPGSQY-ERWVDIYTRLNQERIIFLGQEVTDGLANRIVASMLYLDSDDPN 60

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K I LYINSPGG VTAGMAIYDTMQ+IK  + T C+G AASMG+ LL++G  G R ALP+
Sbjct: 61  KPIYLYINSPGGSVTAGMAIYDTMQYIKSDVVTICVGLAASMGAFLLASGTPGKRLALPH 120

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           ARI++HQP GG  GQASDIE  A++I++I+  LN I  +   ++ E+VEK  DRD+ +SA
Sbjct: 121 ARIMIHQPMGGTRGQASDIEIEAREILRIRSLLNSILAERAHQSIEKVEKDTDRDYFLSA 180

Query: 193 SEACDWGVVDKVLMSRI 209
            EA ++G+VD+V+  R+
Sbjct: 181 EEAREYGLVDQVIEERV 197


>gi|313617264|gb|EFR89730.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           innocua FSL S4-378]
          Length = 183

 Score =  254 bits (650), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 104/183 (56%), Positives = 140/183 (76%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT+RGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL+A++P+K+I
Sbjct: 1   MNLIPTVIEQTSRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG ++AGMAIYDTM F+K  + T  MG AASMGS LL+AG  G RFALPNA I
Sbjct: 61  FLYINSPGGSISAGMAIYDTMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+KIK R+N I  +  G+ YE + +  DRD+ M+A EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAARHILKIKERMNTIMAEKTGQPYEVIARDTDRDNFMTAQEA 180

Query: 196 CDW 198
            D+
Sbjct: 181 KDY 183


>gi|116327862|ref|YP_797582.1| protease subunit of endopeptidase Clp [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116330746|ref|YP_800464.1| protease subunit of endopeptidase Clp [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116120606|gb|ABJ78649.1| Protease subunit of endopeptidase Clp [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116124435|gb|ABJ75706.1| Protease subunit of endopeptidase Clp [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 195

 Score =  254 bits (650), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 107/191 (56%), Positives = 152/191 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++P V+EQT+RGERSYDI+SRLLK+RI+F+   I D  A +I AQLLFLEAENP+++I
Sbjct: 1   MSVIPYVIEQTSRGERSYDIFSRLLKDRIIFLGNAINDDYANVITAQLLFLEAENPERDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LY+NSPGG V++G+AIYDTMQ+IKP + T C+GQA+SM +LLL+ G  G R ALPN+RI
Sbjct: 61  YLYLNSPGGYVSSGLAIYDTMQYIKPDVRTLCLGQASSMAALLLAGGAAGKRSALPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG +GQASDIE  A++++K+K  LN IY K+ GK+ E+++K  +R+  M+A EA
Sbjct: 121 MMHQPMGGATGQASDIEIQAREVLKLKEILNSIYHKHTGKSVEQIQKDTERNFYMTAEEA 180

Query: 196 CDWGVVDKVLM 206
            ++G++D V+ 
Sbjct: 181 KNYGIIDTVIQ 191


>gi|219113871|ref|XP_002186519.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583369|gb|ACI65989.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 223

 Score =  254 bits (650), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 112/198 (56%), Positives = 154/198 (77%), Gaps = 1/198 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP+V+E    GERS+DIYSRLL+ERI+ V G++ DHMA+L+ AQLLFLEAE+P+K + +Y
Sbjct: 19  VPIVLESGALGERSFDIYSRLLRERIICVHGEVSDHMASLVTAQLLFLEAEHPEKPVYMY 78

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG+VTAGMA+YDTMQ+I+P + T CMGQAASMGSLLL+ G  G RFALPN+RI+LH
Sbjct: 79  INSPGGLVTAGMAMYDTMQYIRPDVHTICMGQAASMGSLLLAGGTPGCRFALPNSRIMLH 138

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  G A+DI+  A++I++ +  LN +YV + G+   E+E+ +DRD+ +   +A  +
Sbjct: 139 QPSGGAQGMAADIDIQAREILRTRANLNRLYVHHTGQELSEIERVMDRDYFLDVHQAKKF 198

Query: 199 GVVDKVLMSR-IDIEEKS 215
           GV+D+VL  R  D E+ +
Sbjct: 199 GVIDQVLDKRHRDAEDAA 216


>gi|317470420|ref|ZP_07929809.1| Clp protease [Anaerostipes sp. 3_2_56FAA]
 gi|316902100|gb|EFV24025.1| Clp protease [Anaerostipes sp. 3_2_56FAA]
          Length = 202

 Score =  254 bits (650), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 101/196 (51%), Positives = 143/196 (72%), Gaps = 3/196 (1%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P V+E+TN+GERSYDI+SRLL +RI+F+  ++ D  A+LI AQ+LFLEA++P ++I
Sbjct: 1   MSTIPYVIEKTNQGERSYDIFSRLLSDRIIFLVEEVSDISASLIVAQMLFLEAQDPGRDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAG AIYDTM++I+  ++T C+G AAS G+ LL+ G +G R ALPNA I
Sbjct: 61  QLYINSPGGSVTAGFAIYDTMKYIQCDVATICVGLAASFGAFLLAGGTQGKRMALPNAEI 120

Query: 136 LLHQPSGG---FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           ++HQP+       G ASDI+  +  + K K+RLN I  +N G++ EE+E+  DRDH MSA
Sbjct: 121 MIHQPAIHGNGIQGPASDIKIMSDYMQKNKQRLNRILAENTGRSIEEIERDTDRDHFMSA 180

Query: 193 SEACDWGVVDKVLMSR 208
            EA  +G++D V+  R
Sbjct: 181 EEALKYGLIDSVISKR 196


>gi|240849147|ref|NP_001155481.1| putative ATP-dependent Clp protease proteolytic subunit,
           mitochondrial [Acyrthosiphon pisum]
 gi|239792011|dbj|BAH72394.1| ACYPI002586 [Acyrthosiphon pisum]
          Length = 224

 Score =  254 bits (649), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 107/186 (57%), Positives = 149/186 (80%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P+VVEQT RGERSYDI+SRLLKERI+ V G+I DH+A+L+ AQLLFL+ EN +  I++Y
Sbjct: 33  IPIVVEQTGRGERSYDIFSRLLKERIICVMGEINDHVASLVIAQLLFLQFENQKATINMY 92

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+ IYDTM +IKP +ST+C+GQA SMGS+LL+AG KG R ALP++RI++H
Sbjct: 93  INSPGGSVTAGLGIYDTMMYIKPDVSTWCIGQACSMGSVLLAAGAKGKRHALPHSRIMIH 152

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  G+ASD++    +I+++K  L +IY K+ G   ++++ +++ DH MSA EA  +
Sbjct: 153 QPSGGMQGKASDMKIVTDEILRLKSSLIDIYGKHTGMPADKIDASMESDHFMSADEAVTF 212

Query: 199 GVVDKV 204
           G++DKV
Sbjct: 213 GLIDKV 218


>gi|268611241|ref|ZP_06144968.1| ATP-dependent Clp protease, protease subunit [Ruminococcus
           flavefaciens FD-1]
          Length = 196

 Score =  254 bits (649), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 108/196 (55%), Positives = 147/196 (75%), Gaps = 2/196 (1%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
              LVP VVEQT+RGERSYDI+SRLL +RI+ ++ Q+ D  A+L+ AQLL+LE+++P+K+
Sbjct: 1   MSSLVPYVVEQTSRGERSYDIFSRLLNDRIIMLSDQVNDTTASLVVAQLLYLESQDPEKD 60

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           ISLYINSPGG VTAG AIYDTM +IK  +ST C+G AASMG+ LLS+G KG R ALPN+ 
Sbjct: 61  ISLYINSPGGSVTAGFAIYDTMNYIKCDVSTICIGMAASMGAFLLSSGAKGKRIALPNSE 120

Query: 135 ILLHQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           I++HQP   GG  GQ +DI  HA+++ + + RL  I  +N GK+ EE+    +RD+ M+A
Sbjct: 121 IMIHQPLIGGGLGGQQTDIMIHAKNMERTRNRLESILAENTGKSVEEIHAACERDNYMTA 180

Query: 193 SEACDWGVVDKVLMSR 208
            EA D+G++DKV+  R
Sbjct: 181 QEAMDYGLIDKVIEKR 196


>gi|226227816|ref|YP_002761922.1| ATP-dependent Clp protease proteolytic subunit [Gemmatimonas
           aurantiaca T-27]
 gi|226091007|dbj|BAH39452.1| ATP-dependent Clp protease proteolytic subunit [Gemmatimonas
           aurantiaca T-27]
          Length = 204

 Score =  254 bits (648), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 101/194 (52%), Positives = 148/194 (76%), Gaps = 1/194 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P ++E+++RGER+YDI+SRLL +RI+F+   I D +A +I AQ+LFL+A+NP+K I LY
Sbjct: 6   MPYIIERSSRGERTYDIFSRLLMDRIIFLGSPINDDVANIIIAQMLFLDADNPEKPIHLY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG V+AG+A+YDTMQFIK P+ T CMG AASMG+ LL AG  G R ALP++RI++H
Sbjct: 66  INSPGGSVSAGLAMYDTMQFIKAPVYTTCMGMAASMGAFLLCAGAPGHRAALPHSRIMIH 125

Query: 139 QPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QPS  G  G ASDIE  A++I+ ++ ++NE+  K+ G+  E+VE+  DRD  MSA +A +
Sbjct: 126 QPSQNGGGGSASDIEIQAREILYLRAKMNELMAKHTGRQVEQVERDTDRDRFMSADDAKE 185

Query: 198 WGVVDKVLMSRIDI 211
           +G++D V+  + ++
Sbjct: 186 YGLIDNVIQVQAEL 199


>gi|325283535|ref|YP_004256076.1| ATP-dependent Clp protease proteolytic subunit [Deinococcus
           proteolyticus MRP]
 gi|324315344|gb|ADY26459.1| ATP-dependent Clp protease proteolytic subunit [Deinococcus
           proteolyticus MRP]
          Length = 198

 Score =  254 bits (648), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 98/192 (51%), Positives = 144/192 (75%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++P V+EQT RGER+YDIYSRLLK+RI+FV   +E  MA  I AQLL L+++NP++EI
Sbjct: 1   MSVIPYVIEQTGRGERTYDIYSRLLKDRIIFVGTPVESQMANSIVAQLLLLDSQNPEQEI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YIN PGG V AG+AIYDTMQ+++ PIST C+G A SMGS+LL AG+KG R ALPN+RI
Sbjct: 61  QMYINCPGGEVYAGLAIYDTMQYVRAPISTICVGMAMSMGSVLLMAGDKGKRMALPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQ S GF G   D+E  A++++ ++ +L EIY K+    ++++ + ++RD+ MS  EA
Sbjct: 121 MIHQGSAGFRGNTPDLEVQAKEVLSLRDKLVEIYHKHTDLPHDKLLRDMERDYFMSPEEA 180

Query: 196 CDWGVVDKVLMS 207
             +G++D+V+  
Sbjct: 181 QQYGLIDQVIER 192


>gi|261205022|ref|XP_002627248.1| ATP-dependent Clp protease proteolytic subunit [Ajellomyces
           dermatitidis SLH14081]
 gi|239592307|gb|EEQ74888.1| ATP-dependent Clp protease proteolytic subunit [Ajellomyces
           dermatitidis SLH14081]
 gi|239611539|gb|EEQ88526.1| ATP-dependent Clp protease proteolytic subunit [Ajellomyces
           dermatitidis ER-3]
          Length = 248

 Score =  254 bits (648), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 106/211 (50%), Positives = 150/211 (71%), Gaps = 4/211 (1%)

Query: 4   EGCAKKDSEDVFLG--LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICA 61
              + + S     G    P V E    G  +YDI+SRLLKERIV + G++++ ++  I A
Sbjct: 20  RNYSNRPSLTPPRGWTPTPFVTETVGGGWHTYDIFSRLLKERIVCLNGEVDETLSASIVA 79

Query: 62  QLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSA 121
           QLLFLEA+NP+K I LYINSPGG VTAG+A+YDTM +I  P+ST C+GQAASMGSLLL  
Sbjct: 80  QLLFLEADNPEKPIHLYINSPGGSVTAGLAVYDTMTYISAPVSTICVGQAASMGSLLLCG 139

Query: 122 GEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK--TYEE 179
           G  G R+ LP++ +++HQPSGG+ GQA+DI  HA++I++++R+LNEIY  +  K  + +E
Sbjct: 140 GHPGKRYCLPHSSVMVHQPSGGYFGQATDIAIHAKEILRVRRQLNEIYKLHLTKEMSLDE 199

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           +EK ++RD+ M A EA + G+VD++L  RI 
Sbjct: 200 IEKWMERDYFMGAREALEMGIVDEILDRRIK 230


>gi|282891306|ref|ZP_06299808.1| hypothetical protein pah_c050o084 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498803|gb|EFB41120.1| hypothetical protein pah_c050o084 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 202

 Score =  254 bits (648), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 98/197 (49%), Positives = 145/197 (73%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
            +  F  L P V+E T RGERS DI+SRLL++RIVF+   I D +A ++ AQLLFL+ E+
Sbjct: 3   DKRPFNSLTPYVIEDTARGERSMDIFSRLLQDRIVFIGTDITDQVANIVVAQLLFLKMED 62

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
           P+K++ LYINS GG +T+G+AIYDT++++   ++T+C+GQA+SMG+LLL AG KG RFAL
Sbjct: 63  PKKDVHLYINSMGGYITSGLAIYDTLRWMTCDVNTYCIGQASSMGALLLMAGTKGKRFAL 122

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           PN+RI++HQPSGG  G +SDI   A++I+ +KR L+EI     G++ E +    +RD  M
Sbjct: 123 PNSRIMIHQPSGGVGGTSSDIMLQAKEILVLKRSLHEIMAGATGQSVERIAADSERDFYM 182

Query: 191 SASEACDWGVVDKVLMS 207
           S  EA ++G++D+V+ +
Sbjct: 183 SPQEAKEYGIIDEVVTT 199


>gi|328955401|ref|YP_004372734.1| ATP-dependent Clp protease proteolytic subunit ClpP [Coriobacterium
           glomerans PW2]
 gi|328455725|gb|AEB06919.1| ATP-dependent Clp protease proteolytic subunit ClpP [Coriobacterium
           glomerans PW2]
          Length = 207

 Score =  254 bits (648), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 107/205 (52%), Positives = 143/205 (69%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
             +   LVP VVEQT RGERSYDIYSRLL +RIVF+  +I    A L+ AQLL LE+++ 
Sbjct: 3   SKIASALVPYVVEQTPRGERSYDIYSRLLNDRIVFLGEEINSVTANLVIAQLLHLESQDA 62

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+ISLYINSPGG V +G+AI DTM FIK  +ST C+G AASM +LLL+ G  G RF LP
Sbjct: 63  EKDISLYINSPGGEVYSGLAILDTMNFIKSDVSTICVGMAASMAALLLANGASGKRFCLP 122

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+ +++HQPSGG  GQ ++IE  A +I + ++ LN I     G+  E+VE   +RDH M 
Sbjct: 123 NSMMMIHQPSGGAQGQQTEIEIAAAEIKRNRQNLNRILADATGQPIEKVEIDTERDHYMR 182

Query: 192 ASEACDWGVVDKVLMSRIDIEEKSK 216
           A EA  +G+VD+++ SR + E+ SK
Sbjct: 183 AEEAQSYGLVDRIISSRSETEKSSK 207


>gi|119512063|ref|ZP_01631157.1| ATP-dependent Clp protease proteolytic subunit [Nodularia spumigena
           CCY9414]
 gi|119463289|gb|EAW44232.1| ATP-dependent Clp protease proteolytic subunit [Nodularia spumigena
           CCY9414]
          Length = 197

 Score =  254 bits (648), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 97/193 (50%), Positives = 140/193 (72%), Gaps = 2/193 (1%)

Query: 19  VPMVVEQTNRGE--RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +   G+      IY RL +ERI+F+   ++D +A  I A +L+L++++P K+I 
Sbjct: 5   VPKVPYRMPGGQYTDWISIYDRLYRERIIFLGRDVDDEIANQIIAVMLYLDSDDPGKDIY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG+VT+GMAI+DTMQ IK  + T C+G AASMGS LL+AG KG R ALP++RI+
Sbjct: 65  LYINSPGGMVTSGMAIFDTMQHIKSDVVTICVGLAASMGSFLLAAGTKGKRMALPHSRIM 124

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  GQASDIE  A++I++I+ +LN IY +  G+   ++EK +DRD  MSA+EA 
Sbjct: 125 IHQPSGGTRGQASDIEIEAREILRIRHQLNGIYAEKTGQDISKIEKDMDRDFFMSAAEAK 184

Query: 197 DWGVVDKVLMSRI 209
           ++G++D+V+  R 
Sbjct: 185 EYGLIDRVIEERP 197


>gi|289450649|ref|YP_003475569.1| endopeptidase Clp [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289185196|gb|ADC91621.1| endopeptidase Clp [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 194

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 103/193 (53%), Positives = 139/193 (72%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMV+EQT RGERSYDIYSRLLKERI+ ++ ++    A+LI AQLLFLEAE+P K+I
Sbjct: 1   MSLVPMVIEQTGRGERSYDIYSRLLKERIIILSDEVNHVTASLITAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG V+ G+ I DTM +IKP + T  MG  ASMG++LL++G KG RF LPNA +
Sbjct: 61  QFYINSPGGSVSDGLMILDTMDYIKPDVQTIGMGMCASMGAVLLTSGTKGKRFMLPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASD+   A+ + K ++ LN I  +  G++  E+E+  DRD+  SA EA
Sbjct: 121 MIHQPLGGMQGQASDMIIAAEHVTKTRQILNAILQRQTGRSLNEIERDTDRDNWKSAQEA 180

Query: 196 CDWGVVDKVLMSR 208
             +G++D V+  R
Sbjct: 181 IAYGLIDHVMDKR 193


>gi|119473285|ref|ZP_01614937.1| ATP-dependent Clp protease proteolytic subunit [Alteromonadales
           bacterium TW-7]
 gi|119444508|gb|EAW25828.1| ATP-dependent Clp protease proteolytic subunit [Alteromonadales
           bacterium TW-7]
          Length = 173

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 105/171 (61%), Positives = 135/171 (78%)

Query: 40  LKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
            KERI+F+TGQ+ED+MA LI AQ+LFLE+ENP K+I LYINSPGG VTAGMAIYDTM FI
Sbjct: 2   FKERIIFLTGQVEDNMANLILAQMLFLESENPDKDIFLYINSPGGSVTAGMAIYDTMNFI 61

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
           KP +ST C+GQAASMG+ LL+AG KG RF LPN+R+++HQP GGF GQASD E HA++I+
Sbjct: 62  KPDVSTICVGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGFQGQASDFEIHAKEIL 121

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
            IK +LN +  ++ G+  + + K  DRD+ MSASEA ++G+VD V  +R  
Sbjct: 122 SIKDKLNRLMAEHTGQPLDVISKDTDRDNFMSASEAVEYGLVDSVFANRDK 172


>gi|258592920|emb|CBE69229.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           [NC10 bacterium 'Dutch sediment']
          Length = 205

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 115/193 (59%), Positives = 153/193 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+PMVVEQT+RGER+YDI+SRLLK+RI+F+   I+D  + LI AQLLFLEAE+P K+I
Sbjct: 1   MQLIPMVVEQTSRGERAYDIFSRLLKDRILFIGTPIDDAESNLIIAQLLFLEAEDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LY+NSPGG VTA +AIYDTMQ+IKP I T CMGQAAS  +LLL+AG KG R+ALP+ARI
Sbjct: 61  HLYVNSPGGSVTASLAIYDTMQYIKPAIETICMGQAASGAALLLAAGAKGKRYALPHARI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDI+  A++I+++++ L+ I   + G+  E +EK  DRD  MS SEA
Sbjct: 121 MIHQPYGGAQGQASDIQIQAKEILRMRQELDRIIADHTGQPLERIEKDSDRDFFMSPSEA 180

Query: 196 CDWGVVDKVLMSR 208
            D+G++D+V+ SR
Sbjct: 181 KDYGLIDEVIYSR 193


>gi|298491711|ref|YP_003721888.1| endopeptidase Clp ['Nostoc azollae' 0708]
 gi|298233629|gb|ADI64765.1| Endopeptidase Clp ['Nostoc azollae' 0708]
          Length = 197

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 96/191 (50%), Positives = 140/191 (73%), Gaps = 1/191 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP  +  +N  E+  D+  RL +ERI+F+T +++D +A  I A  L+L++++  K I LY
Sbjct: 8   VPYRLPGSNY-EQWIDLEDRLFRERIIFLTEEVDDGIANAIVAYFLYLDSDDQTKPIYLY 66

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAGMAIYDTMQ+IK  + T C+G AASMGS LL+ G +G R ALP++RI++H
Sbjct: 67  INSPGGSVTAGMAIYDTMQYIKSEVVTICVGLAASMGSFLLATGTQGKRLALPHSRIMIH 126

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  GQA+DI+  AQ+I++I+ +LN+IY  N G+   ++EK +DRD  MSA EA ++
Sbjct: 127 QPSGGTRGQATDIQIEAQEILRIRSQLNQIYADNTGQALAKIEKDMDRDFFMSAQEAKEY 186

Query: 199 GVVDKVLMSRI 209
           G++D+V+  R+
Sbjct: 187 GLIDRVIEERL 197


>gi|24215259|ref|NP_712740.1| ATP-dependent protease ClpP [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45657293|ref|YP_001379.1| ATP-dependent Clp protease proteolytic subunit [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|67460406|sp|Q8F352|CLPP_LEPIN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|67460498|sp|Q72SG6|CLPP1_LEPIC RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|24196349|gb|AAN49758.1| ATP-dependent protease ClpP [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45600531|gb|AAS70016.1| ATP-dependent Clp protease, proteolytic subunit [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
          Length = 198

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 109/191 (57%), Positives = 152/191 (79%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++P V+EQT+RGERSYDI+SRLLK+RI+F+   I D  A +I AQLLFLEAENP+++I
Sbjct: 1   MSVIPYVIEQTSRGERSYDIFSRLLKDRIIFLGNAINDDYANVITAQLLFLEAENPERDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LY+NSPGG V++G+AIYDTMQ+IKP + T C+GQA+SM +LLL+ G  G R ALPNARI
Sbjct: 61  YLYLNSPGGYVSSGLAIYDTMQYIKPDVRTLCLGQASSMAALLLAGGAAGKRSALPNARI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG +GQASDIE  A++++K+K  LN IY K+ GKT E+++K  +R+  M+A EA
Sbjct: 121 MMHQPMGGATGQASDIEIQAREVLKLKEILNSIYHKHTGKTVEQIQKDTERNFYMTADEA 180

Query: 196 CDWGVVDKVLM 206
            ++G++D V+ 
Sbjct: 181 KNYGIIDTVIQ 191


>gi|170077811|ref|YP_001734449.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           PCC 7002]
 gi|169885480|gb|ACA99193.1| Clp protease [Synechococcus sp. PCC 7002]
          Length = 199

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 97/195 (49%), Positives = 136/195 (69%), Gaps = 4/195 (2%)

Query: 19  VPMVVEQTNRGE--RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  Q          +IY RL +ERI+F+   + D +A  I A +L+L++E+P K I 
Sbjct: 5   VPKVPYQMPGQPYSDWINIYDRLYRERIIFLGRGVNDALANQIIAIMLYLDSEDPSKPIY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAG+AIYDTM+ IK  + T C+G AASMG+ LLSAG KG R ALP++RI+
Sbjct: 65  LYINSPGGSVTAGLAIYDTMKHIKSEVVTICVGLAASMGAFLLSAGTKGKRLALPHSRIM 124

Query: 137 LHQPSGGFSG--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           +HQP GG  G  QA+DI+  A++I++IK +LNE+   + G++ E++EK  DRD+ MSA E
Sbjct: 125 IHQPLGGIQGRRQATDIDIEAKEIIRIKHQLNELMAAHTGQSIEKIEKDTDRDYFMSAQE 184

Query: 195 ACDWGVVDKVLMSRI 209
           A ++G++DKV+  R 
Sbjct: 185 ALEYGLIDKVIEERP 199


>gi|94968588|ref|YP_590636.1| ATP-dependent Clp protease proteolytic subunit ClpP [Candidatus
           Koribacter versatilis Ellin345]
 gi|116243126|sp|Q1IRD8|CLPP_ACIBL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|94550638|gb|ABF40562.1| ATP-dependent Clp protease proteolytic subunit ClpP [Candidatus
           Koribacter versatilis Ellin345]
          Length = 194

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 109/191 (57%), Positives = 156/191 (81%), Gaps = 1/191 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMV+EQT+RGER+YDIYSRLL++ I+F+   I+D++A LI AQ+LFLEAE+P+K+ISL
Sbjct: 2   LVPMVIEQTSRGERAYDIYSRLLRDNIIFLGTPIDDNVANLIIAQMLFLEAEDPEKDISL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TAGMAIYDTMQFI+P ++T C+GQ ASMG+ LL++G  G R+ALP +RIL+
Sbjct: 62  YINSPGGSITAGMAIYDTMQFIRPDVATICIGQCASMGATLLASGAPGKRYALPTSRILI 121

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP   G SGQA+DI+ HA++I++++   N++  K+C +  E+VEK ++RD IM+A +A 
Sbjct: 122 HQPLMSGLSGQATDIDIHAREILRMREITNQLLAKHCNQRLEKVEKDVERDFIMNAQQAK 181

Query: 197 DWGVVDKVLMS 207
           ++G+VD ++  
Sbjct: 182 EYGLVDDIIYK 192


>gi|126657894|ref|ZP_01729047.1| ATP-dependent Clp protease proteolytic subunit [Cyanothece sp.
           CCY0110]
 gi|126620834|gb|EAZ91550.1| ATP-dependent Clp protease proteolytic subunit [Cyanothece sp.
           CCY0110]
          Length = 199

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 102/197 (51%), Positives = 140/197 (71%), Gaps = 2/197 (1%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
            + +  VP  +  +   ER  DIY+RL +ERI+F+  ++ D +A  I A LL+L++E+P 
Sbjct: 2   PIGVPSVPYRLPGSQY-ERWIDIYTRLGQERIIFLGQEVTDGIANRIVALLLYLDSEDPS 60

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K I LYINSPGG VTAGMAIYDTMQ+IK  + T C+G AASMGS LL+AG  G R ALP+
Sbjct: 61  KPIYLYINSPGGSVTAGMAIYDTMQYIKSEVITICVGLAASMGSFLLAAGTPGKRLALPH 120

Query: 133 ARILLHQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           ARI++HQP GG    QASDIE  A +I++I+ +LN++    CG+T E++EK  DRD+ MS
Sbjct: 121 ARIMIHQPMGGTGRRQASDIEIEANEILRIRSQLNQLLANQCGQTLEKIEKDTDRDYFMS 180

Query: 192 ASEACDWGVVDKVLMSR 208
           A EA ++G++DKV+  R
Sbjct: 181 AEEAKEYGLIDKVIEER 197


>gi|94986250|ref|YP_605614.1| endopeptidase Clp [Deinococcus geothermalis DSM 11300]
 gi|116243132|sp|Q1IWD9|CLPP_DEIGD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|94556531|gb|ABF46445.1| Endopeptidase Clp [Deinococcus geothermalis DSM 11300]
          Length = 200

 Score =  253 bits (646), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 98/192 (51%), Positives = 141/192 (73%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++P V+EQT RGER YDIYSRLLK+RI+FV   IE  MA  I AQLL L+++NP +EI
Sbjct: 1   MSVIPYVIEQTGRGERMYDIYSRLLKDRIIFVGTPIESQMANTIVAQLLLLDSQNPDQEI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YIN PGG V AG+AIYDTM++IK P+ST C+G A SMGS+LL AG+KG R ALPN+RI
Sbjct: 61  QMYINCPGGEVYAGLAIYDTMRYIKAPVSTICVGIAMSMGSVLLMAGDKGKRLALPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQ S GF G   D+E  A+++++++  L +IY ++    +E++ + ++RD+ MS  EA
Sbjct: 121 MIHQGSAGFRGNTPDLEVQAKEVLRLRDTLIDIYHRHTNLPHEKLLRDMERDYFMSPYEA 180

Query: 196 CDWGVVDKVLMS 207
             +G++D V+  
Sbjct: 181 QQYGLIDSVIEH 192


>gi|330921326|ref|XP_003299376.1| hypothetical protein PTT_10352 [Pyrenophora teres f. teres 0-1]
 gi|311326959|gb|EFQ92512.1| hypothetical protein PTT_10352 [Pyrenophora teres f. teres 0-1]
          Length = 248

 Score =  253 bits (646), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 110/212 (51%), Positives = 157/212 (74%), Gaps = 4/212 (1%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +++       +P V E T  G ++ DI+SRLL+ERI+ + G+++D M+    AQLLFLEA
Sbjct: 37  REAPRALSLPIPYVTETTGGGWKTSDIFSRLLQERIICLNGEVDDFMSANAVAQLLFLEA 96

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           +NP+K IS+YINSPGG V+AG+AIYDTM +IK P+ST CMG AASMGSLLL+ G +G R+
Sbjct: 97  DNPEKPISMYINSPGGSVSAGLAIYDTMNYIKSPVSTICMGIAASMGSLLLAGGAEGQRY 156

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKN--CGKTYEEVEKTLDR 186
            LP+AR+++HQPSGG+SG+ASDI  HA++I++I+ +LN IY  +    +T EE+EK ++R
Sbjct: 157 ILPHARVMIHQPSGGYSGKASDIADHAKEILRIRDKLNRIYQSHLTTKRTLEEIEKYMER 216

Query: 187 DHIMSASEACDWGVVDKVLMSR--IDIEEKSK 216
           D+ M A EA ++G+VDK+L  R     EE+ K
Sbjct: 217 DYYMDAQEAVEFGIVDKILEKRETSAKEEEKK 248


>gi|65320084|ref|ZP_00393043.1| COG0740: Protease subunit of ATP-dependent Clp proteases [Bacillus
           anthracis str. A2012]
          Length = 186

 Score =  253 bits (646), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 100/184 (54%), Positives = 131/184 (71%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P VVEQT  GERSYDIYSRLLK+RIV +  +I D +A+ + AQLLFLEAE+ +K+I
Sbjct: 1   MNAIPYVVEQTKLGERSYDIYSRLLKDRIVIIGSEINDQVASSVVAQLLFLEAEDAEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I
Sbjct: 61  FLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA++IE  A+ I+K+K  +N++  +  G+  E V    +RD+ M+A  A
Sbjct: 121 MIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMTAERA 180

Query: 196 CDWG 199
             +G
Sbjct: 181 KAYG 184


>gi|330836759|ref|YP_004411400.1| ATP-dependent Clp protease proteolytic subunit ClpP [Spirochaeta
           coccoides DSM 17374]
 gi|329748662|gb|AEC02018.1| ATP-dependent Clp protease proteolytic subunit ClpP [Spirochaeta
           coccoides DSM 17374]
          Length = 200

 Score =  253 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 105/198 (53%), Positives = 149/198 (75%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           D  +    LVP+VVEQ+  GERSYDI+SRLLK+RI+F+ G+I D  A L  AQLLFLE+E
Sbjct: 2   DRTERMNSLVPVVVEQSGIGERSYDIFSRLLKDRIIFLDGEINDVTADLAVAQLLFLESE 61

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           +P K+ISLYINSPGG VTAG+AIYDT+Q+I   + T C+GQAASM +LLL++G  G RF 
Sbjct: 62  DPSKDISLYINSPGGSVTAGLAIYDTIQYIHSDVQTICIGQAASMAALLLTSGAAGKRFI 121

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LP+AR+++HQP GG  GQA+DI  HA+++ +IK+   +I+ ++ G   ++V+K L+RD+ 
Sbjct: 122 LPSARVMIHQPWGGVQGQATDIGIHAREMSRIKQLTVDIFARHTGHPADQVKKDLERDYF 181

Query: 190 MSASEACDWGVVDKVLMS 207
           ++A +A  +G+VD V+  
Sbjct: 182 LAAPDAVAYGIVDHVMKR 199


>gi|322435045|ref|YP_004217257.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Acidobacterium sp. MP5ACTX9]
 gi|321162772|gb|ADW68477.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Acidobacterium sp. MP5ACTX9]
          Length = 197

 Score =  253 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 106/193 (54%), Positives = 155/193 (80%), Gaps = 1/193 (0%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +GL+P VVEQT+RGER+YDIYSRLL++ I+F+   I+D++A +I AQLLFL  E+P+K+I
Sbjct: 1   MGLIPYVVEQTSRGERTYDIYSRLLRDNIIFMGTPIDDNVANVIIAQLLFLSGEDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG +TAG+AIYDTMQ+IK  + T C+GQAASMG+ LL AG++G RFALPN+RI
Sbjct: 61  QMYINSPGGSITAGLAIYDTMQYIKNDVMTLCIGQAASMGAFLLMAGKQGKRFALPNSRI 120

Query: 136 LLHQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           L+HQPS GG SGQA+DI+ HA++I++I+   N +  K+ G+   ++E+ ++RD IM+A +
Sbjct: 121 LIHQPSMGGLSGQATDIDIHAREILRIREITNTLMSKSTGQPLAQIERDVERDFIMTAPQ 180

Query: 195 ACDWGVVDKVLMS 207
           A ++G++D ++  
Sbjct: 181 AKEYGIIDDIIDR 193


>gi|218439262|ref|YP_002377591.1| ATP-dependent Clp protease proteolytic subunit [Cyanothece sp. PCC
           7424]
 gi|218171990|gb|ACK70723.1| Endopeptidase Clp [Cyanothece sp. PCC 7424]
          Length = 199

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 100/194 (51%), Positives = 139/194 (71%), Gaps = 3/194 (1%)

Query: 19  VPMVVEQTNRG--ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +      ER  DIY+RL +ERI+F+  ++ D +A  I A LL+L++E+P K I 
Sbjct: 5   VPSVPFRLPGSQYERWIDIYTRLSQERIIFLGQEVTDGLANRIVAFLLYLDSEDPNKPIY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGMAIYDTMQ+IK  + T C+G AASMGS LL+AG  G R ALP++RI+
Sbjct: 65  LYINSPGGSVTAGMAIYDTMQYIKSEVVTICVGLAASMGSFLLAAGTPGKRLALPHSRIM 124

Query: 137 LHQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP GG    QA+DIE  A++I++I+++LN++  +  GKT E++EK  DRD+ MS  EA
Sbjct: 125 IHQPMGGTGRRQATDIEIEAKEILRIRQQLNQMLAERTGKTLEQIEKDTDRDYFMSPYEA 184

Query: 196 CDWGVVDKVLMSRI 209
            ++G++DKV+  R 
Sbjct: 185 QEYGLIDKVIEERA 198


>gi|168048812|ref|XP_001776859.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671715|gb|EDQ58262.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 265

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 90/191 (47%), Positives = 131/191 (68%), Gaps = 6/191 (3%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G  PM+ E      R   + ++L ++RI+   G ++D MA LI AQLL+L+A +P ++I 
Sbjct: 59  GPPPMLAE------RFQSVITQLFQQRIIRCGGAVDDDMANLIVAQLLYLDAADPNRDIV 112

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+NSPGG VTAGMAI+DTM+ I+P +ST C+G AASMG+ LLS G KG R++LPN+RI+
Sbjct: 113 MYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASMGAFLLSGGTKGKRYSLPNSRIM 172

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQ +DIE  A +I+  K  LN     + G+ YE++ +  DRD  MSA EA 
Sbjct: 173 IHQPLGGAQGQQTDIEIQANEILHHKANLNGYLAYHTGQPYEKIVQDTDRDFFMSAKEAK 232

Query: 197 DWGVVDKVLMS 207
           ++G++D V+ +
Sbjct: 233 EYGLIDAVISN 243


>gi|282900572|ref|ZP_06308514.1| Peptidase S14, ClpP [Cylindrospermopsis raciborskii CS-505]
 gi|281194372|gb|EFA69327.1| Peptidase S14, ClpP [Cylindrospermopsis raciborskii CS-505]
          Length = 194

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 98/188 (52%), Positives = 140/188 (74%), Gaps = 1/188 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP  +  +N  E+  D+  RL +ERI+F+T +++D +A  I A LL+L++++  K I LY
Sbjct: 8   VPYRLPGSNY-EQWIDLEDRLFRERIIFLTEEVDDGIANAIVAYLLYLDSDDQTKPIYLY 66

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAGMAIYDT+Q+IK  + T C+G AASMGS LL+AG KG R ALP++RI++H
Sbjct: 67  INSPGGSVTAGMAIYDTIQYIKSEVVTICVGLAASMGSFLLAAGAKGKRLALPHSRIMIH 126

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  GQASDIE  A++I++I+ +LN+IY  N G+   ++EK +DRD  MSA EA ++
Sbjct: 127 QPSGGTRGQASDIEIEAREILRIRHQLNQIYADNTGQVLSKIEKDMDRDFFMSAQEAKEY 186

Query: 199 GVVDKVLM 206
           G++D+V+ 
Sbjct: 187 GLIDRVIE 194


>gi|116622996|ref|YP_825152.1| ATP-dependent Clp protease proteolytic subunit ClpP [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116226158|gb|ABJ84867.1| ATP-dependent Clp protease proteolytic subunit ClpP [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 206

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 109/192 (56%), Positives = 153/192 (79%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQT+RGER+YDIYSRLLKE I+F+   I+D +A LI AQLLFLEAE+P+K+IS+
Sbjct: 6   LVPMVVEQTSRGERAYDIYSRLLKENIIFLGTPIDDQVANLIIAQLLFLEAEDPEKDISI 65

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG +TAG+AI DTM FI+P I T C+GQAASM ++LL+ G KG RF+LPN+RI++
Sbjct: 66  YVNSPGGSITAGLAILDTMAFIRPDIVTICVGQAASMAAVLLAKGTKGKRFSLPNSRIMI 125

Query: 138 HQPSGGF-SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQPS    +GQA+DI+ +A++I++++  LN +     G++ E V K +DRD+IM   +A 
Sbjct: 126 HQPSMQGLAGQAADIDIYAREILRMREILNSMLADATGQSIERVAKDVDRDYIMEPDQAV 185

Query: 197 DWGVVDKVLMSR 208
           ++G++D+V+ SR
Sbjct: 186 NYGMIDRVITSR 197


>gi|167754483|ref|ZP_02426610.1| hypothetical protein ALIPUT_02779 [Alistipes putredinis DSM 17216]
 gi|167659108|gb|EDS03238.1| hypothetical protein ALIPUT_02779 [Alistipes putredinis DSM 17216]
          Length = 221

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 94/189 (49%), Positives = 136/189 (71%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+      + D++SRL+ +RI+F+   I D  A +I AQLLFLE+ +P+K+I +YI
Sbjct: 32  PTIIEERQLNVATMDVFSRLMMDRIIFLGAPIYDDAANIIQAQLLFLESADPEKDIQIYI 91

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VTAG+ IYDTMQ ++P ++T C G AASMG++LL+AG  G R ALP++R+++HQ
Sbjct: 92  NSPGGSVTAGLGIYDTMQLVQPDVATICTGLAASMGAVLLTAGAAGKRSALPHSRVMIHQ 151

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I K K+ L EI   + G   E++EK  DRD+ +SA EA ++G
Sbjct: 152 PLGGAQGQASDIEITAREIRKTKQELYEIIAAHSGAPIEKIEKDADRDYWLSAREAKEYG 211

Query: 200 VVDKVLMSR 208
           ++D+VL  R
Sbjct: 212 LIDEVLTKR 220


>gi|226356972|ref|YP_002786712.1| ATP-dependent Clp protease proteolytic subunit [Deinococcus deserti
           VCD115]
 gi|226318962|gb|ACO46958.1| putative Endopeptidase Clp [Deinococcus deserti VCD115]
          Length = 200

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 100/196 (51%), Positives = 145/196 (73%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + ++P V+EQT RGER YDIYSRLLK+RI+FV   IE  MA  I AQLL L+++NP++EI
Sbjct: 1   MSVIPYVIEQTGRGERMYDIYSRLLKDRIIFVGTPIESQMANTIVAQLLLLDSQNPEQEI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YIN PGG V AG+AIYDTM++IK P+ST C+G A SMGS+LL AG+KG R ALPN+RI
Sbjct: 61  QMYINCPGGEVYAGLAIYDTMRYIKAPVSTICVGIAMSMGSVLLMAGDKGKRMALPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQ S GF G   D+E  A++++ ++ +L EIY ++    +E++ + ++RD+ MS  EA
Sbjct: 121 MIHQGSAGFRGNTPDLEVQAKEVLHLRDKLVEIYHRHTDIPHEKLMRDMERDYFMSPEEA 180

Query: 196 CDWGVVDKVLMSRIDI 211
             +G++D V+ +  D+
Sbjct: 181 MRYGLIDSVIENTRDL 196


>gi|310778378|ref|YP_003966711.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ilyobacter
           polytropus DSM 2926]
 gi|309747701|gb|ADO82363.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ilyobacter
           polytropus DSM 2926]
          Length = 199

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 101/186 (54%), Positives = 142/186 (76%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P V+E T RGER+YDIYSRLL++RI+F+  +I+D +A  I AQLLFLEAE+ +K+I +YI
Sbjct: 4   PTVIENTGRGERAYDIYSRLLRDRIIFLGTEIDDRVANSIVAQLLFLEAEDAEKDIIMYI 63

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGGV+T GMAIYDTM +IKP + T C+GQAASMG+LLL+AG  G R++L N+RI++HQ
Sbjct: 64  NSPGGVITGGMAIYDTMNYIKPDVQTVCIGQAASMGALLLTAGTPGKRYSLENSRIMIHQ 123

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQA+DI   A++I+K+K   ++I  K  G+ +++V +  +RD  M+  EA ++G
Sbjct: 124 PLGGARGQATDIAIQAKEILKMKELTSQIISKTTGQPFDKVMEDTERDKYMNPYEAKEYG 183

Query: 200 VVDKVL 205
           +VD V 
Sbjct: 184 LVDHVF 189


>gi|255944899|ref|XP_002563217.1| Pc20g06920 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587952|emb|CAP86021.1| Pc20g06920 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 258

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 107/201 (53%), Positives = 148/201 (73%), Gaps = 4/201 (1%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
              P V E       +YDI+SRL+KERI+ + GQ++D ++  I AQLLFLEA+NP K I 
Sbjct: 47  TPTPFVTETVGGSWHTYDIFSRLMKERIICLNGQVDDTLSASIVAQLLFLEADNPSKPIH 106

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAG+AIYDTM +I  P+ST C+GQAASMGSLLL+ GE G R+ LP++ I+
Sbjct: 107 LYINSPGGSVTAGLAIYDTMTYIASPVSTICVGQAASMGSLLLAGGEAGKRYCLPHSSIM 166

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKN-CGK---TYEEVEKTLDRDHIMSA 192
           +HQPSGG+ GQASDI  HA++I++++ +LNEIY ++   K   + +E+EK ++RD+ M A
Sbjct: 167 VHQPSGGYFGQASDIAIHAKEILRVRTQLNEIYQRHLTSKKKLSLDEIEKLMERDYFMGA 226

Query: 193 SEACDWGVVDKVLMSRIDIEE 213
            EA + GVVD++L  R+  +E
Sbjct: 227 KEALELGVVDEILDRRVQGKE 247


>gi|168018159|ref|XP_001761614.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687298|gb|EDQ73682.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 303

 Score =  252 bits (644), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 90/191 (47%), Positives = 131/191 (68%), Gaps = 6/191 (3%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G  PM+ E      R   + ++L ++RI+   G ++D MA LI AQLL+L+A +P ++I 
Sbjct: 97  GPPPMLAE------RFQSVITQLFQQRIIRCGGAVDDDMANLIVAQLLYLDAADPDRDIV 150

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+NSPGG VTAGMAI+DTM+ I+P +ST C+G AASMG+ LLS G KG R++LPN+RI+
Sbjct: 151 MYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASMGAFLLSGGTKGKRYSLPNSRIM 210

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQ +DIE  A +I+  K  LN     + G+ YE++ +  DRD  MSA EA 
Sbjct: 211 IHQPLGGAQGQQTDIEIQANEILHHKANLNGYLAYHTGQPYEKIVQDTDRDFFMSAKEAQ 270

Query: 197 DWGVVDKVLMS 207
           ++G++D V+ +
Sbjct: 271 EYGLIDAVISN 281


>gi|225419706|ref|ZP_03762009.1| hypothetical protein CLOSTASPAR_06044 [Clostridium asparagiforme
           DSM 15981]
 gi|225041643|gb|EEG51889.1| hypothetical protein CLOSTASPAR_06044 [Clostridium asparagiforme
           DSM 15981]
          Length = 198

 Score =  252 bits (644), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 99/196 (50%), Positives = 141/196 (71%), Gaps = 3/196 (1%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P+VVEQT RGERSYDIYSRLL +RI+F+  ++ +  A+LI A+LLFLEA++PQK++
Sbjct: 1   MSAIPIVVEQTGRGERSYDIYSRLLSDRIIFLGEEVSETSASLIIAELLFLEAQDPQKDV 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
             YINSPGG VTAG AIYDTM+ I+  +ST C+G AAS G+ LL+ G +G R ALPN++I
Sbjct: 61  QFYINSPGGSVTAGFAIYDTMRHIRCDVSTICIGLAASFGAFLLAGGTRGKRLALPNSQI 120

Query: 136 LLHQPSGG---FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           ++HQP+       G ASDI   +  + K ++RLN I  +N G T  E+E+  +RD+ MSA
Sbjct: 121 MIHQPAMSGRGIQGPASDILIMSDYMQKSRQRLNRILAENTGHTPLEIERDTERDNFMSA 180

Query: 193 SEACDWGVVDKVLMSR 208
            EA ++G++D ++  R
Sbjct: 181 EEALEYGLIDSIIAKR 196


>gi|325507187|gb|ADZ18825.1| ATP-dependent Clp protease proteolytic subunit [Chlamydophila
           psittaci 6BC]
          Length = 200

 Score =  252 bits (644), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 97/197 (49%), Positives = 147/197 (74%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVE T RGER+ DIYSRLLK+RIV +  +I + +A  + AQLLFL +E+P+K+I ++
Sbjct: 1   MPYVVEDTGRGERAMDIYSRLLKDRIVMIGQEITEPLANTVIAQLLFLMSEDPKKDIKVF 60

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG +TAG+AIYDT++F+   ++T+C+GQAASMG+LLLSAG KG R+ALP++R+++H
Sbjct: 61  INSPGGYITAGLAIYDTIRFLGCDVNTYCIGQAASMGALLLSAGTKGKRYALPHSRMMIH 120

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  G ++DI+  A +I+ +K+ L  I  +  G+  E++ +  +RD  M A +A  +
Sbjct: 121 QPSGGIIGTSADIQLQAAEILTLKKHLANILSECTGQPVEKIIEDSERDFFMGAEDAISY 180

Query: 199 GVVDKVLMSRIDIEEKS 215
           G++DKV+ S  D ++K 
Sbjct: 181 GLIDKVVSSAKDTKDKD 197


>gi|300087790|ref|YP_003758312.1| endopeptidase Clp [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527523|gb|ADJ25991.1| Endopeptidase Clp [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 205

 Score =  252 bits (644), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 97/194 (50%), Positives = 141/194 (72%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            ++PMV+E ++RGERS+DIYS LLKERIVF+  +I D +A  I AQLLFL+ E+P K+IS
Sbjct: 9   NIIPMVIESSSRGERSFDIYSLLLKERIVFLGTEINDQVANTIIAQLLFLDREDPDKDIS 68

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYI+SPGGV++AG+AIYDT+Q I+P +ST C+G AASM ++LL AG KG RFALPN+ I 
Sbjct: 69  LYIHSPGGVISAGLAIYDTIQLIRPKVSTICVGMAASMATVLLCAGAKGKRFALPNSTIH 128

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQ  GG  GQASDI   A++I +++  + +I     G+  +++    DRD+ ++  +A 
Sbjct: 129 MHQAIGGARGQASDIVIQAKEITRLQDIIRDILAARTGQPLDKIIHDTDRDYYLNPVQAK 188

Query: 197 DWGVVDKVLMSRID 210
           ++G++D +L    D
Sbjct: 189 EYGLIDDILKKPED 202


>gi|312143235|ref|YP_003994681.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Halanaerobium
           sp. 'sapolanicus']
 gi|311903886|gb|ADQ14327.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Halanaerobium
           sp. 'sapolanicus']
          Length = 198

 Score =  252 bits (644), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 109/199 (54%), Positives = 158/199 (79%), Gaps = 1/199 (0%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+PMVVEQTNRGERSYDIYSRLLK+RIVF+   + D +A  + AQLLFLEA+NP K+I
Sbjct: 1   MSLIPMVVEQTNRGERSYDIYSRLLKDRIVFLGSPVSDQVANTVIAQLLFLEADNPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTA +A+YDTMQ+IKP + T  MGQAAS G+LLL+AG +G R+ALP AR+
Sbjct: 61  YLYINSPGGSVTAALAMYDTMQYIKPDVVTIGMGQAASAGALLLAAGAEGKRYALPYARV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP+GG  G+A++ E H +++++I+  LN+I  ++ G+  E++ + +++D+ M+A EA
Sbjct: 121 MIHQPAGGAQGKATEAEIHIKELMRIRELLNQILSEHTGQDVEKIAQDVEKDYFMTAEEA 180

Query: 196 CDWGVVDKVLMSRIDIEEK 214
            D+G++D+V+  R ++EEK
Sbjct: 181 LDYGIIDEVIT-RNELEEK 198


>gi|254446451|ref|ZP_05059927.1| Clp protease [Verrucomicrobiae bacterium DG1235]
 gi|198260759|gb|EDY85067.1| Clp protease [Verrucomicrobiae bacterium DG1235]
          Length = 182

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 94/172 (54%), Positives = 134/172 (77%)

Query: 33  YDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI 92
            DIYSRLLK+RIVF+   I D +A  I AQLLFL+ E+P+K+I++YINSPGG VT+GMAI
Sbjct: 1   MDIYSRLLKDRIVFIGTPINDEIANAIIAQLLFLQMEDPKKDINVYINSPGGSVTSGMAI 60

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIE 152
           YDTM F+   +ST+C+G AASMG++LL+ G KG R+ALPN+R+++HQPSGG  GQASDI 
Sbjct: 61  YDTMNFLSCEVSTWCIGMAASMGTILLAGGTKGKRYALPNSRVMIHQPSGGAGGQASDIS 120

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             A++I++ +  LN++  +  G++ E ++K  DRD+ M++ EA ++GV+DKV
Sbjct: 121 IQAKEIIRWRETLNKVLAEKTGQSVERIQKDSDRDYWMTSQEALEYGVIDKV 172


>gi|302391290|ref|YP_003827110.1| ATP-dependent Clp protease proteolytic subunit ClpP [Acetohalobium
           arabaticum DSM 5501]
 gi|302203367|gb|ADL12045.1| ATP-dependent Clp protease proteolytic subunit ClpP [Acetohalobium
           arabaticum DSM 5501]
          Length = 199

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 112/198 (56%), Positives = 156/198 (78%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
             GLVPMVVEQTNRGERSYDIYSRLLK+RIVF+   I D +A L+ AQLLFLEAE+P K+
Sbjct: 1   MSGLVPMVVEQTNRGERSYDIYSRLLKDRIVFIGSPINDEIANLVIAQLLFLEAEDPDKD 60

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I +YINSPGG VT+ +AIYDTMQ+IKP +ST  MG AAS G+LLL++G +G R+ALP +R
Sbjct: 61  IYIYINSPGGSVTSALAIYDTMQYIKPDVSTISMGLAASAGALLLASGAEGKRYALPYSR 120

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQP+GG  G+A+DIE  AQ+I+ +++ LN I   + G+  E++E+ +DRD  MS+ +
Sbjct: 121 IMIHQPAGGAEGRAADIEIQAQEILDLRKILNNILADHTGQPLEKIEEDVDRDFFMSSED 180

Query: 195 ACDWGVVDKVLMSRIDIE 212
           A ++G++D+V+  + D++
Sbjct: 181 AKEYGIIDEVISRQEDLD 198


>gi|159903903|ref|YP_001551247.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus str. MIT 9211]
 gi|159889079|gb|ABX09293.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9211]
          Length = 223

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 94/206 (45%), Positives = 139/206 (67%), Gaps = 2/206 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           +S+          +    VP  +  +   ER  DIY+RL  ERI+F+  ++ D +A  + 
Sbjct: 13  LSYHLSKTFFIMPIGTPSVPYRLPGSQF-ERWVDIYTRLGAERILFLGQEVNDGVANSLV 71

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+L+L++E+  K I LYINSPGG VTAG+AIYDTM+++K  + T C+G AASMG+ LLS
Sbjct: 72  AQMLYLDSEDSTKPIYLYINSPGGSVTAGLAIYDTMKYVKSDVVTICVGLAASMGAFLLS 131

Query: 121 AGEKGMRFALPNARILLHQPSGGF-SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
           AG K  R ALP++RI++HQP GG    QASDIE  A++I++IK  LN    +  G+++E+
Sbjct: 132 AGTKNKRLALPHSRIMIHQPLGGTSQRQASDIEIEAKEILRIKEMLNRSLAEMTGQSFEK 191

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVL 205
           +EK  DRD+ +SA EA ++G++DKV+
Sbjct: 192 IEKDTDRDYFLSAKEAEEYGLIDKVI 217


>gi|168004996|ref|XP_001755197.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162693790|gb|EDQ80141.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 251

 Score =  252 bits (643), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 90/191 (47%), Positives = 131/191 (68%), Gaps = 6/191 (3%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G  PM+ E      R   + ++L ++RI+   G ++D MA LI AQLL+L+A +P ++I 
Sbjct: 45  GPPPMLAE------RFQSVITQLFQQRIIRCGGAVDDDMANLIVAQLLYLDAADPNRDIV 98

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+NSPGG VTAGMAI+DTM+ I+P +ST C+G AASMG+ LLS G KG R++LPN+RI+
Sbjct: 99  MYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASMGAFLLSGGTKGKRYSLPNSRIM 158

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQ +DIE  A +I+  K  LN     + G+ YE++ +  DRD  MSA EA 
Sbjct: 159 IHQPLGGAQGQQTDIEIQANEILHHKANLNGYLAYHTGQPYEKIVQDTDRDFFMSAKEAQ 218

Query: 197 DWGVVDKVLMS 207
           ++G++D V+ +
Sbjct: 219 EYGLIDAVISN 229


>gi|302384943|ref|YP_003820765.1| Endopeptidase Clp [Clostridium saccharolyticum WM1]
 gi|302195571|gb|ADL03142.1| Endopeptidase Clp [Clostridium saccharolyticum WM1]
          Length = 197

 Score =  252 bits (643), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 98/195 (50%), Positives = 143/195 (73%), Gaps = 2/195 (1%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            L+PMV+EQT RGERSYDI+SRLL +RI+ + G + +  A+LI AQ+LFLE+ +  K+I+
Sbjct: 3   NLIPMVIEQTTRGERSYDIFSRLLNDRIIMLNGTVTNETASLIMAQMLFLESADCTKDIN 62

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VT G AI DTM +IK  +ST  +GQ+ S  SLLL++G+KG RFAL N+ IL
Sbjct: 63  LYINSPGGSVTDGFAIMDTMNYIKCDVSTISIGQSGSAASLLLASGKKGKRFALKNSEIL 122

Query: 137 LHQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           +HQP  SGG  GQA+DI  H++ + + K +L+EIY +  G+    +++ ++RDH ++A E
Sbjct: 123 IHQPSISGGLQGQATDIRIHSEWLERTKEKLHEIYSRLTGQPLNRIQEDMERDHYLTAEE 182

Query: 195 ACDWGVVDKVLMSRI 209
           A D+G++D++L  + 
Sbjct: 183 AKDYGLIDEILNRQK 197


>gi|307102787|gb|EFN51055.1| hypothetical protein CHLNCDRAFT_141566 [Chlorella variabilis]
          Length = 258

 Score =  252 bits (643), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 90/188 (47%), Positives = 131/188 (69%), Gaps = 6/188 (3%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           PMVVE      R   + S+L  +RIV + G ++D MA LI AQLL+L++ +P ++I+LYI
Sbjct: 71  PMVVE------RFQQVISQLFSQRIVRLGGPVDDDMANLIVAQLLYLDSADPNRDITLYI 124

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VTAGMA++DTM+ I+P +ST C+G AASMG+ LL++G +G R++LPN+RI++HQ
Sbjct: 125 NSPGGSVTAGMAVFDTMRHIRPNVSTVCVGLAASMGAFLLASGHQGKRYSLPNSRIMIHQ 184

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQA+DIE  A +I+  K  LN    +  G++ + +    DRD  MSA EA ++G
Sbjct: 185 PLGGAQGQAADIEIQANEILHHKLTLNGYLAEFTGQSMDTITADTDRDFFMSAQEAVEYG 244

Query: 200 VVDKVLMS 207
           ++D V+  
Sbjct: 245 LIDAVVSK 252


>gi|153209299|ref|ZP_01947334.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Coxiella
           burnetii 'MSU Goat Q177']
 gi|154706302|ref|YP_001424146.1| ATP-dependent Clp protease proteolytic subunit [Coxiella burnetii
           Dugway 5J108-111]
 gi|165924012|ref|ZP_02219844.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Coxiella
           burnetii RSA 334]
 gi|212212797|ref|YP_002303733.1| ATP-dependent Clp protease proteolytic subunit [Coxiella burnetii
           CbuG_Q212]
 gi|212219038|ref|YP_002305825.1| ATP-dependent Clp protease proteolytic subunit [Coxiella burnetii
           CbuK_Q154]
 gi|189082453|sp|A9KDS6|CLPP_COXBN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706447|sp|B6J8W4|CLPP_COXB1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706448|sp|B6J0W0|CLPP_COXB2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|120575415|gb|EAX32039.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Coxiella
           burnetii 'MSU Goat Q177']
 gi|154355588|gb|ABS77050.1| ATP-dependent endopeptidase clp proteolytic subunit [Coxiella
           burnetii Dugway 5J108-111]
 gi|165916535|gb|EDR35139.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Coxiella
           burnetii RSA 334]
 gi|212011207|gb|ACJ18588.1| ATP-dependent endopeptidase clp proteolytic subunit [Coxiella
           burnetii CbuG_Q212]
 gi|212013300|gb|ACJ20680.1| ATP-dependent endopeptidase clp proteolytic subunit [Coxiella
           burnetii CbuK_Q154]
          Length = 195

 Score =  252 bits (643), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 108/192 (56%), Positives = 148/192 (77%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQT+RGER+YDIYSRLLK+R++F+ GQ+EDHMA L  AQ+LFLE+ENP K+I+L
Sbjct: 4   LVPMVVEQTSRGERAYDIYSRLLKDRVIFLVGQVEDHMANLAIAQMLFLESENPNKDINL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VT+ MAIYDTMQF+KP + T C+GQAAS G+LLL+ G KG R  LP++ +++
Sbjct: 64  YINSPGGAVTSAMAIYDTMQFVKPDVRTLCIGQAASAGALLLAGGAKGKRHCLPHSSVMI 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQ  GG+ GQ +DI+ HA+   ++  +LN+I  K+ GK  E VEK  +RD+ ++  EA +
Sbjct: 124 HQVLGGYQGQGTDIQIHAKQTQRVSDQLNQILAKHTGKDIERVEKDTNRDYFLTPEEAVE 183

Query: 198 WGVVDKVLMSRI 209
           +G++D +   R 
Sbjct: 184 YGLIDSIFTERP 195


>gi|307152499|ref|YP_003887883.1| Endopeptidase Clp [Cyanothece sp. PCC 7822]
 gi|306982727|gb|ADN14608.1| Endopeptidase Clp [Cyanothece sp. PCC 7822]
          Length = 199

 Score =  251 bits (642), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 98/198 (49%), Positives = 140/198 (70%), Gaps = 2/198 (1%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
            + +  VP  +  +   ER  DIY+RL +ERI+F+  ++ D +A  I A LL+L++E+P 
Sbjct: 2   PIGVPSVPYRLPGSQY-ERWIDIYTRLSQERIIFLGQEVTDGLANRIVAFLLYLDSEDPN 60

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K I LYINSPGG VTAGMAIYDTMQ+IK  + T C+G AASMGS LL+AG  G R ALP+
Sbjct: 61  KPIYLYINSPGGSVTAGMAIYDTMQYIKSEVITICVGLAASMGSFLLAAGTPGKRLALPH 120

Query: 133 ARILLHQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           +RI++HQP GG    QA+DIE  A++I++I+ +LN++     GK+ E++EK  DRD+ MS
Sbjct: 121 SRIMIHQPMGGTGRRQATDIEIEAKEILRIRTQLNQMLADRTGKSIEQIEKDTDRDYFMS 180

Query: 192 ASEACDWGVVDKVLMSRI 209
             EA ++G++DKV+  R+
Sbjct: 181 PYEAKEYGLIDKVIEERV 198


>gi|317131949|ref|YP_004091263.1| Endopeptidase Clp [Ethanoligenens harbinense YUAN-3]
 gi|315469928|gb|ADU26532.1| Endopeptidase Clp [Ethanoligenens harbinense YUAN-3]
          Length = 196

 Score =  251 bits (642), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 100/196 (51%), Positives = 134/196 (68%), Gaps = 2/196 (1%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
              L+P+V+EQTN GERSYDI+SRLL +RIV +   +    A+LI AQ+LFLE+ +  K+
Sbjct: 1   MSNLIPVVIEQTNHGERSYDIFSRLLNDRIVMLNEPVSSESASLIVAQMLFLESADCDKD 60

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I  YINSPGG VT   AI DTM +IK  +ST C+G AAS  SLLL AG KG RFAL N+ 
Sbjct: 61  IQFYINSPGGSVTDAFAILDTMNYIKCDVSTICIGMAASAASLLLVAGTKGKRFALCNSE 120

Query: 135 ILLHQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           +L+HQP  SGG  GQA++I+ H+  + K K++LN I+    G+  E +E  ++RDH M+A
Sbjct: 121 VLIHQPSISGGLQGQATEIKIHSDWMDKTKQKLNRIFSDLTGQPLETIEHDMERDHYMTA 180

Query: 193 SEACDWGVVDKVLMSR 208
             A D+G+VD +L  R
Sbjct: 181 EGAKDYGIVDDILTHR 196


>gi|282896316|ref|ZP_06304338.1| Peptidase S14, ClpP [Raphidiopsis brookii D9]
 gi|281198812|gb|EFA73691.1| Peptidase S14, ClpP [Raphidiopsis brookii D9]
          Length = 194

 Score =  251 bits (642), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 98/188 (52%), Positives = 140/188 (74%), Gaps = 1/188 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP  +  +N  E+  D+  RL +ERI+F+T +++D +A  I A LL+L++++  K I LY
Sbjct: 8   VPYRLPGSNY-EQWIDLEDRLFRERIIFLTEEVDDGIANAIVAYLLYLDSDDQTKPIYLY 66

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAGMAIYDT+Q+IK  + T C+G AASMGS LL+AG KG R ALP++RI++H
Sbjct: 67  INSPGGSVTAGMAIYDTIQYIKSEVITICVGLAASMGSFLLAAGAKGKRLALPHSRIMIH 126

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  GQASDIE  A++I++I+ +LN+IY  N G+   ++EK +DRD  MSA EA ++
Sbjct: 127 QPSGGTRGQASDIEIEAREILRIRHQLNQIYADNTGQVLSKIEKDMDRDFFMSAQEAKEY 186

Query: 199 GVVDKVLM 206
           G++D+V+ 
Sbjct: 187 GLIDRVIE 194


>gi|309388894|gb|ADO76774.1| ATP-dependent Clp protease proteolytic subunit ClpP [Halanaerobium
           praevalens DSM 2228]
          Length = 198

 Score =  251 bits (642), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 111/199 (55%), Positives = 159/199 (79%), Gaps = 1/199 (0%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+PMVVEQTNRGERSYDIYSRLLK+RIVF+  Q+ D +A  + AQLLFLEA+NP K+I
Sbjct: 1   MSLIPMVVEQTNRGERSYDIYSRLLKDRIVFLGSQVTDQVANTVIAQLLFLEADNPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTA +A+YDTMQ+IKP + T  MGQAAS G+LLL+AG +G R+ALP AR+
Sbjct: 61  YLYINSPGGSVTAALAMYDTMQYIKPDVVTIGMGQAASAGALLLAAGAEGKRYALPYARV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP+GG  G+A++ E H +++++I+  LNEI  ++ G+T E++ + +++D+ M+A EA
Sbjct: 121 MIHQPAGGAQGKATEAEIHIKELMRIRELLNEILSQHTGQTAEKIAQDVEKDYFMTAKEA 180

Query: 196 CDWGVVDKVLMSRIDIEEK 214
            D+G++D+V+  R ++ EK
Sbjct: 181 VDYGLIDEVIT-RNELNEK 198


>gi|308462025|ref|XP_003093299.1| CRE-CLPP-1 protein [Caenorhabditis remanei]
 gi|308250366|gb|EFO94318.1| CRE-CLPP-1 protein [Caenorhabditis remanei]
          Length = 222

 Score =  251 bits (642), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 110/186 (59%), Positives = 150/186 (80%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V++   +GER+YDIYSRLL++RIV +   ++D +A+ + AQLLFL++E+ +K I +Y
Sbjct: 27  IPFVIDNEGKGERTYDIYSRLLRDRIVCLMTPVDDFIASALIAQLLFLQSESGKKPIHMY 86

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDTMQ I  P++T+ +GQA+SMGSLLL+AGEKGMR ALPNARI++H
Sbjct: 87  INSPGGSVTAGLAIYDTMQMISAPVATWVIGQASSMGSLLLAAGEKGMRSALPNARIMVH 146

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  G  SDI   A++I ++K+RLNEIYV + G +Y+E+E+TLDRD  MSA EA  +
Sbjct: 147 QPSGGAQGTCSDIVIRAEEITRLKKRLNEIYVHHTGISYDEIERTLDRDRFMSAQEALKF 206

Query: 199 GVVDKV 204
           G+VDK+
Sbjct: 207 GLVDKI 212


>gi|189200839|ref|XP_001936756.1| ATP-dependent Clp protease proteolytic subunit 1 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187983855|gb|EDU49343.1| ATP-dependent Clp protease proteolytic subunit 1 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 244

 Score =  251 bits (642), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 108/213 (50%), Positives = 156/213 (73%), Gaps = 3/213 (1%)

Query: 7   AKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
             +++       +P V E T  G ++ DI+SRLL+ERI+ + G+++D M+    AQLLFL
Sbjct: 31  PDREAPRALSLPIPYVTETTGGGWKTSDIFSRLLQERIICLNGEVDDFMSANAVAQLLFL 90

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           EA+NP+K IS+YINSPGG V+AG+AIYDTM +IK P+ST CMG AASMGSLLL+ G +G 
Sbjct: 91  EADNPEKPISMYINSPGGSVSAGLAIYDTMNYIKSPVSTICMGIAASMGSLLLAGGAEGQ 150

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKN--CGKTYEEVEKTL 184
           R+ LP+AR+++HQPSGG+ G+ASDI  HA++I++I+ +LN IY  +    ++ EE+EK +
Sbjct: 151 RYILPHARVMIHQPSGGYRGKASDIADHAKEILRIRDKLNRIYQSHLTTKRSLEEIEKYM 210

Query: 185 DRDHIMSASEACDWGVVDKVLMSR-IDIEEKSK 216
           +RD+ M A EA ++G+VDK+L  R I  +E  K
Sbjct: 211 ERDYYMDAQEAVEFGIVDKILEKREISAKEDEK 243


>gi|268529044|ref|XP_002629648.1| C. briggsae CBR-CLPP-1 protein [Caenorhabditis briggsae]
          Length = 206

 Score =  251 bits (642), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 111/186 (59%), Positives = 150/186 (80%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V++   +GER+YDIYSRLL++RIV +   ++D MA+ + AQLLFL++E+ +K I +Y
Sbjct: 11  IPFVIDNEGKGERTYDIYSRLLRDRIVCLMTPVDDFMASALIAQLLFLQSESSKKPIHMY 70

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDTMQ I  P++T+ +GQA+SMGSLLL+AGEKGMR ALPNARI++H
Sbjct: 71  INSPGGSVTAGLAIYDTMQMISAPVATWVIGQASSMGSLLLAAGEKGMRSALPNARIMVH 130

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  G  SDI   A++I ++K+RLNEIYV + G +Y+E+E+TLDRD  MSA EA  +
Sbjct: 131 QPSGGAQGTCSDIVIRAEEITRLKKRLNEIYVHHTGISYDEIERTLDRDRFMSAQEALKF 190

Query: 199 GVVDKV 204
           G+VDK+
Sbjct: 191 GLVDKI 196


>gi|326505348|dbj|BAK03061.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 284

 Score =  251 bits (642), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 89/191 (46%), Positives = 130/191 (68%), Gaps = 6/191 (3%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G  PMV+E      R   + S+L + RI+   G +ED MA +I AQLL+L+A +P K+I 
Sbjct: 88  GPSPMVME------RFQSVVSQLFQHRIIRCGGPVEDDMANVIVAQLLYLDAVDPNKDII 141

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+NSPGG VTAGMAI+DTM+ I+P +ST C+G AASMG+ LLS G KG R++LPN+RI+
Sbjct: 142 MYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCIGLAASMGAFLLSGGTKGKRYSLPNSRIM 201

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQ +D+E  A +++  K  LN     + G+  +++    DRD  MSA EA 
Sbjct: 202 IHQPLGGAQGQETDLEIQANEMLHHKANLNGYLAYHTGQPLDKINVDTDRDFFMSAKEAK 261

Query: 197 DWGVVDKVLMS 207
           ++G++D V+++
Sbjct: 262 EYGLIDGVIVN 272


>gi|284054834|ref|ZP_06385044.1| ATP-dependent Clp protease proteolytic subunit ClpP [Arthrospira
           platensis str. Paraca]
          Length = 212

 Score =  251 bits (642), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 96/193 (49%), Positives = 134/193 (69%)

Query: 3   FEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQ 62
             G           G++PMVVEQ+  GER++D+YSRLL++RI+F+   I+D +A  + AQ
Sbjct: 20  ISGSQPVTINSSAAGVIPMVVEQSGMGERAFDLYSRLLRDRIIFLGTPIDDEVANAVSAQ 79

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           +LFLE+E+P+K+I LYINSPGG VTAGM IYDTMQ I+P + T C G AASMG+ LL++G
Sbjct: 80  MLFLESEDPEKDIQLYINSPGGSVTAGMGIYDTMQQIRPDVVTICYGLAASMGAFLLASG 139

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
             G R +LP++RI++HQP GG  GQA DIE  A++I+  K  LN +  ++ G+  E +  
Sbjct: 140 TAGKRMSLPSSRIMIHQPLGGAQGQAIDIEIQAKEILYHKHTLNTLLAQHTGQPIERINA 199

Query: 183 TLDRDHIMSASEA 195
             +RD  MSA+EA
Sbjct: 200 DTERDFFMSAAEA 212


>gi|218678052|ref|ZP_03525949.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli CIAT
           894]
          Length = 176

 Score =  251 bits (641), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 146/176 (82%), Positives = 165/176 (93%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQTNRGERSYDIYSRLLKERI+F+TG +EDHMATL+CAQLLFLEAENP+KEI
Sbjct: 1   MALVPMVVEQTNRGERSYDIYSRLLKERIIFLTGAVEDHMATLVCAQLLFLEAENPKKEI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGGVVTAGMAIYDTMQFIKP +ST C+GQAASMGSLLL+AG K MRFA PN+RI
Sbjct: 61  ALYINSPGGVVTAGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLAAGHKDMRFATPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           ++HQPSGGF GQASDIERHA+DI+K+KRRLNE+YVK+ G+TYEEVEKTLDRDH M 
Sbjct: 121 MVHQPSGGFQGQASDIERHARDILKMKRRLNEVYVKHTGRTYEEVEKTLDRDHFMD 176


>gi|309790148|ref|ZP_07684720.1| endopeptidase Clp [Oscillochloris trichoides DG6]
 gi|308227733|gb|EFO81389.1| endopeptidase Clp [Oscillochloris trichoides DG6]
          Length = 215

 Score =  251 bits (641), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 92/210 (43%), Positives = 144/210 (68%), Gaps = 1/210 (0%)

Query: 7   AKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
               + D    L+PMV+E ++RGER++DIYSRLLKERI+ +   IED +A LI AQLLFL
Sbjct: 6   NSTPAHDHPSALIPMVIESSSRGERAFDIYSRLLKERIIILGTPIEDQIANLIVAQLLFL 65

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           ++++P ++I LYINSPGG +TAG+AIYDTM+ I+  ++T C+G A SM + +L+ G KG 
Sbjct: 66  DSDDPDRDIWLYINSPGGSITAGLAIYDTMRHIRANVATVCVGMAGSMATPILAGGAKGK 125

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           R++LP++ I +H   GG  G A D+E  A+++++ ++ + E+   + G+T E + K  DR
Sbjct: 126 RYSLPHSTIHMHPAGGGARGYAPDVEIMARELLREQQLIRELLATDTGQTIERIAKDFDR 185

Query: 187 DHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           D  M+  +A ++G++D++L  R DI    K
Sbjct: 186 DLFMTPIQAKEYGIIDEILT-REDIAGGEK 214


>gi|256371559|ref|YP_003109383.1| Endopeptidase Clp [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008143|gb|ACU53710.1| Endopeptidase Clp [Acidimicrobium ferrooxidans DSM 10331]
          Length = 204

 Score =  251 bits (641), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 100/191 (52%), Positives = 151/191 (79%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+E ++RGER+YD+YSRLL+ERI+ +   I+D +A L+C+Q+L+LE E+P ++I+L
Sbjct: 11  LVPTVIETSSRGERAYDLYSRLLRERIIILGTPIDDAVANLVCSQMLYLEYEDPDRDINL 70

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTM+F++P +STFC GQAAS  +++L+AG KG RFALP+ARILL
Sbjct: 71  YINSPGGEITALFAIYDTMRFVRPDVSTFCFGQAASAAAVILAAGAKGKRFALPHARILL 130

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I++++  LNE+  +  G+  E + +  DRD ++ A +A +
Sbjct: 131 HQPYGGVGGQATDIEIQAKEILRMRDLLNEMLAEATGQPVERIAQDTDRDFVLEAPQAVE 190

Query: 198 WGVVDKVLMSR 208
           +G++D+V+++R
Sbjct: 191 YGLIDEVVVAR 201


>gi|291569210|dbj|BAI91482.1| ATP-dependent Clp protease proteolytic subunit [Arthrospira
           platensis NIES-39]
          Length = 198

 Score =  250 bits (640), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 99/196 (50%), Positives = 144/196 (73%), Gaps = 1/196 (0%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
            + +  VP  +  +   E+   IY RL +ERI+F++ +++D +A  I A +L+L++E+P 
Sbjct: 2   PIGVPSVPYRLPGSTY-EQWIGIYERLFRERIIFLSEEVDDGIANAIVAYMLYLDSEDPS 60

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K I LYINSPGG VTAGMAIYDTMQ+IK  + T C+G AASMG+ LL+AG KG R ALPN
Sbjct: 61  KPIYLYINSPGGSVTAGMAIYDTMQYIKSDVVTICVGMAASMGAFLLAAGTKGKRLALPN 120

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           ARI++HQP GG  GQA+DIE  A++I++I++ LNE+  +  G+T E++EK  DRD+ MSA
Sbjct: 121 ARIMIHQPLGGTRGQATDIEIEAKEILRIRKVLNEMLAERSGQTLEKIEKDTDRDYFMSA 180

Query: 193 SEACDWGVVDKVLMSR 208
           +EA ++G++D+V+  R
Sbjct: 181 AEAHEYGLIDQVIEER 196


>gi|51891496|ref|YP_074187.1| ATP-dependent Clp protease proteolytic subunit [Symbiobacterium
           thermophilum IAM 14863]
 gi|67460470|sp|Q67SK0|CLPP1_SYMTH RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|51855185|dbj|BAD39343.1| ATP-dependent Clp protease proteolytic subunit [Symbiobacterium
           thermophilum IAM 14863]
          Length = 202

 Score =  250 bits (640), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 107/200 (53%), Positives = 146/200 (73%), Gaps = 2/200 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+P V+EQTNRGERSYDIYSRLLK+RIVF+   I+D +A ++ AQLLFLE+E+P K ++L
Sbjct: 4   LIPYVIEQTNRGERSYDIYSRLLKDRIVFLGTPIDDQVANVVIAQLLFLESEDPDKPVNL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG+ IYD MQ IK P++T  +G AASM +LLL+AG  G R+ALPNAR+++
Sbjct: 64  YINSPGGSVSAGLGIYDAMQHIKSPVNTTVVGMAASMAALLLAAGT-GKRYALPNARVMI 122

Query: 138 HQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP   G  GQ +DIE  A++ VK K+ + EI  K+ G++ E +    +RD  MSA EA 
Sbjct: 123 HQPHLSGVGGQVTDIEITAREAVKTKQLMAEILAKHSGQSVERILADTERDRWMSAQEAV 182

Query: 197 DWGVVDKVLMSRIDIEEKSK 216
           ++G+VD+VL  R      ++
Sbjct: 183 EYGLVDEVLHPREKASRSAR 202


>gi|229496588|ref|ZP_04390302.1| Clp protease [Porphyromonas endodontalis ATCC 35406]
 gi|229316485|gb|EEN82404.1| Clp protease [Porphyromonas endodontalis ATCC 35406]
          Length = 228

 Score =  250 bits (640), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 90/191 (47%), Positives = 133/191 (69%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+   ++D+ A +I AQLLFL++ +P K+IS+YI
Sbjct: 35  PTIIEERQLNVAQMDVFSRLMMDRIIFLGAGVDDYTANVIQAQLLFLDSSDPGKDISIYI 94

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V AG  IYDTMQ+I   +ST C G AASM ++LL AG  G RFALP++R+++HQ
Sbjct: 95  NSPGGSVYAGYGIYDTMQYISCDVSTICTGMAASMAAVLLVAGSHGKRFALPHSRVMIHQ 154

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I+++K  L +I  ++ G+  E +E+  DRD  M+A EA  +G
Sbjct: 155 PLGGMQGQASDIEIAAKEILRVKGELYKIISEHSGQPLEVIERDSDRDKWMTAEEAQAYG 214

Query: 200 VVDKVLMSRID 210
           ++DKVL  +  
Sbjct: 215 MIDKVLSPKPK 225


>gi|218245805|ref|YP_002371176.1| ATP-dependent Clp protease proteolytic subunit [Cyanothece sp. PCC
           8801]
 gi|34222618|sp|Q93AD7|CLPP_SYNP8 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|16506757|gb|AAL23931.1|AF423175_1 putative ATP-dependent Clp proteinase [Cyanothece sp. PCC 8801]
 gi|218166283|gb|ACK65020.1| Endopeptidase Clp [Cyanothece sp. PCC 8801]
          Length = 199

 Score =  250 bits (640), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 98/195 (50%), Positives = 138/195 (70%), Gaps = 2/195 (1%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP  +  +   ER  DIY+RL +ERI+F+  ++ D +A  I A LL+L++E+P K I
Sbjct: 5   VPSVPYRLPGSQY-ERWIDIYTRLSQERIIFLGQEVTDGLANRIVAFLLYLDSEDPGKPI 63

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMAIYDTMQ+IK  + T C+G AASMG+ LL++G  G R ALP+ARI
Sbjct: 64  YLYINSPGGSVTAGMAIYDTMQYIKSDVITICVGLAASMGAFLLASGTPGKRLALPHARI 123

Query: 136 LLHQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           ++HQP GG    QA+DI+  A +I++I+++LNEI     G+T E+++K  DRD+ MSA E
Sbjct: 124 MIHQPMGGTGRRQATDIQIEANEILRIRQQLNEILAHKTGQTIEKIQKDTDRDYYMSAEE 183

Query: 195 ACDWGVVDKVLMSRI 209
           A  +G++DKV+  R 
Sbjct: 184 AQAYGLIDKVIEDRT 198


>gi|300681014|sp|A8WPG6|CLPP1_CAEBR RecName: Full=ATP-dependent Clp protease proteolytic subunit 1,
           mitochondrial; Flags: Precursor
 gi|309366007|emb|CAP22373.2| CBR-CLPP-1 protein [Caenorhabditis briggsae AF16]
          Length = 219

 Score =  250 bits (640), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 111/186 (59%), Positives = 150/186 (80%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V++   +GER+YDIYSRLL++RIV +   ++D MA+ + AQLLFL++E+ +K I +Y
Sbjct: 24  IPFVIDNEGKGERTYDIYSRLLRDRIVCLMTPVDDFMASALIAQLLFLQSESSKKPIHMY 83

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDTMQ I  P++T+ +GQA+SMGSLLL+AGEKGMR ALPNARI++H
Sbjct: 84  INSPGGSVTAGLAIYDTMQMISAPVATWVIGQASSMGSLLLAAGEKGMRSALPNARIMVH 143

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  G  SDI   A++I ++K+RLNEIYV + G +Y+E+E+TLDRD  MSA EA  +
Sbjct: 144 QPSGGAQGTCSDIVIRAEEITRLKKRLNEIYVHHTGISYDEIERTLDRDRFMSAQEALKF 203

Query: 199 GVVDKV 204
           G+VDK+
Sbjct: 204 GLVDKI 209


>gi|291236428|ref|XP_002738143.1| PREDICTED: caseinolytic peptidase, ATP-dependent, proteolytic
           subunit-like [Saccoglossus kowalevskii]
          Length = 231

 Score =  250 bits (640), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 100/181 (55%), Positives = 141/181 (77%)

Query: 27  NRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVV 86
            RGER+YDIYSRLLKERI+ + G I D +++L+ AQLLFL++E+ +K I +YINSPGG V
Sbjct: 42  GRGERAYDIYSRLLKERIICLMGPITDDLSSLVVAQLLFLQSESNKKPIHMYINSPGGSV 101

Query: 87  TAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG 146
           TAG+ IYDTMQ++ PPIST+C+GQA SM SLLL AG  GMR++LPN+RI++HQPSG   G
Sbjct: 102 TAGLGIYDTMQYVLPPISTWCVGQACSMASLLLCAGFPGMRYSLPNSRIMVHQPSGQAHG 161

Query: 147 QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           QA+DI+  A++I+K+K ++N +YVK+  +  + +   ++RD  M+  EA ++G+VDKVL 
Sbjct: 162 QATDIQIQAEEILKMKNQINNLYVKHTKQPLDFIAAAMERDKFMNPIEAEEFGLVDKVLD 221

Query: 207 S 207
            
Sbjct: 222 H 222


>gi|29654072|ref|NP_819764.1| ATP-dependent endopeptidase clp proteolytic subunit [Coxiella
           burnetii RSA 493]
 gi|161830533|ref|YP_001596950.1| ATP-dependent Clp protease proteolytic subunit [Coxiella burnetii
           RSA 331]
 gi|60389768|sp|Q83DJ2|CLPP_COXBU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|189082454|sp|A9NDG0|CLPP_COXBR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|29541338|gb|AAO90278.1| ATP-dependent endopeptidase clp proteolytic subunit [Coxiella
           burnetii RSA 493]
 gi|161762400|gb|ABX78042.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Coxiella
           burnetii RSA 331]
          Length = 195

 Score =  250 bits (639), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 108/192 (56%), Positives = 148/192 (77%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMVVEQT+RGER+YDIYSRLLK+R++F+ GQ+EDHMA L  AQ+LFLE+ENP K+I+L
Sbjct: 4   LVPMVVEQTSRGERAYDIYSRLLKDRVIFLVGQVEDHMANLAIAQMLFLESENPNKDINL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VT+ MAIYDTMQF+KP + T C+GQAAS G+LLL+ G KG R  LP++ +++
Sbjct: 64  YINSPGGAVTSAMAIYDTMQFVKPDVRTLCIGQAASAGALLLAGGAKGKRHCLPHSSVMI 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQ  GG+ GQ +DI+ HA+   ++  +LN+I  K+ GK  E VEK  +RD+ ++  EA +
Sbjct: 124 HQVLGGYQGQGTDIQIHAKQTQRVSDQLNQILAKHTGKDIERVEKDTNRDYFLTPEEAVE 183

Query: 198 WGVVDKVLMSRI 209
           +G++D +   R 
Sbjct: 184 YGLIDSIFKERP 195


>gi|195640846|gb|ACG39891.1| ATP-dependent Clp protease proteolytic subunit 1 [Zea mays]
          Length = 281

 Score =  250 bits (639), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 91/191 (47%), Positives = 132/191 (69%), Gaps = 6/191 (3%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G  PMV+E      R   + S+L + RI+   G +ED MA +I AQLL+L+A +P K+I 
Sbjct: 85  GPSPMVME------RFQSVVSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAIDPNKDII 138

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+NSPGG VTAGMAI+DTM+ I+P +ST C+G AASMG+ LLSAG KG R++LPN+RI+
Sbjct: 139 MYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCIGLAASMGAFLLSAGTKGKRYSLPNSRIM 198

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQ +D+E  A +++  K  LN     + G+  +++    DRD+ MSA EA 
Sbjct: 199 IHQPLGGAQGQETDLEIQANEMLHHKANLNGYLAYHTGQPLDKINVDTDRDYFMSAKEAK 258

Query: 197 DWGVVDKVLMS 207
           ++G++D V+M+
Sbjct: 259 EYGLIDGVIMN 269


>gi|297622838|ref|YP_003704272.1| endopeptidase Clp [Truepera radiovictrix DSM 17093]
 gi|297164018|gb|ADI13729.1| Endopeptidase Clp [Truepera radiovictrix DSM 17093]
          Length = 209

 Score =  250 bits (639), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 89/194 (45%), Positives = 140/194 (72%), Gaps = 1/194 (0%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+EQT RGER YD+YSRLLKERI+F+   I+  +A ++ AQLL L++++ ++EI
Sbjct: 1   MPLVPYVIEQTGRGERMYDVYSRLLKERIIFLGTPIDSEVANVVVAQLLLLDSQSSEQEI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +L+IN PGG V AG+AIYDTMQFI  P++T C+G A SMGS++L AG +G R ALPN+R+
Sbjct: 61  NLFINCPGGEVYAGLAIYDTMQFISAPVATTCVGIAMSMGSIILMAGAEGKRAALPNSRV 120

Query: 136 LLHQPSGGFSGQA-SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           ++HQ S GF   +  D+E  A++ + ++  +  +Y ++ G+  E++ + ++RD  MS  +
Sbjct: 121 MIHQGSAGFPRSSLPDLEVQAREFMFVRDTILGLYERHTGQEREKILRDMERDFFMSPEQ 180

Query: 195 ACDWGVVDKVLMSR 208
           A  +G++D+V+  R
Sbjct: 181 AKAYGLIDRVIEPR 194


>gi|115311786|sp|Q2GD19|CLPP_NEOSM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
          Length = 201

 Score =  250 bits (639), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 119/201 (59%), Positives = 163/201 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVV+QT RGER+YDI+SRLLKER+VF+TG IED MA+LI AQLLFLEAENP K+I
Sbjct: 1   MNLVPMVVDQTPRGERAYDIFSRLLKERVVFLTGPIEDGMASLIVAQLLFLEAENPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG++IYDTMQ+IKP +ST C+GQAAS  SL+L++G +G RFALP++R+
Sbjct: 61  FMYINSPGGVVTAGLSIYDTMQYIKPSVSTVCVGQAASAASLILASGAEGKRFALPHSRV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+D+E H ++I+++KR +NEIY K+ G+T +++E  L+RD  +S  EA
Sbjct: 121 MVHQPSGGVRGQATDMEIHVKEILQLKRMINEIYQKHTGETIKKIETLLERDTFLSPEEA 180

Query: 196 CDWGVVDKVLMSRIDIEEKSK 216
              G++D ++  R +   K +
Sbjct: 181 KKVGIIDDIITQRKENSGKQE 201


>gi|110638106|ref|YP_678315.1| ATP-dependent Clp protease proteolytic subunit ClpP [Cytophaga
           hutchinsonii ATCC 33406]
 gi|110280787|gb|ABG58973.1| ATP-dependent Clp protease proteolytic subunit ClpP [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 229

 Score =  250 bits (639), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 96/206 (46%), Positives = 144/206 (69%)

Query: 2   SFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICA 61
           S+    +  + +  +G+ P VVE+        D++SRL+ +RI+F+   I+D++A ++ A
Sbjct: 24  SYINQIQSIAPNYIVGMTPNVVEERQMRATVIDVFSRLMGDRIIFLGTGIDDYVANVVNA 83

Query: 62  QLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSA 121
           QLLFLE+ +P+K+I +YINSPGG V AG+ IYDTM +I P +ST C+G AASMG++LL  
Sbjct: 84  QLLFLESVDPKKDIMMYINSPGGSVYAGLGIYDTMHYINPDVSTTCVGLAASMGAVLLCG 143

Query: 122 GEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVE 181
           G    R ALP++RI++HQP GG  GQASDIE  A++I+K+K  L EI  K+ GK  E +E
Sbjct: 144 GAAKKRSALPHSRIMIHQPLGGAQGQASDIEITAREILKLKGELYEILAKHSGKDIETIE 203

Query: 182 KTLDRDHIMSASEACDWGVVDKVLMS 207
           K  DRD+ + A+EA ++G++D+VL+ 
Sbjct: 204 KHSDRDYWLKAAEAKEYGIIDEVLVK 229


>gi|148655690|ref|YP_001275895.1| endopeptidase Clp [Roseiflexus sp. RS-1]
 gi|148567800|gb|ABQ89945.1| Endopeptidase Clp [Roseiflexus sp. RS-1]
          Length = 203

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 88/192 (45%), Positives = 133/192 (69%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            VP +VE+T RGERS+D++SRLL+ERI+ +   I+D +A+LI AQLL+L+  +P ++I  
Sbjct: 5   PVPTIVERTPRGERSWDLFSRLLQERIIMLGTPIDDEVASLIVAQLLYLQHTDPDRDIWF 64

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+AIYDTM+ I P + T C+G+A SM ++LL+ G +G R+ALP+A I  
Sbjct: 65  YINSPGGSVRDGLAIYDTMKLISPDVCTVCVGRAGSMATILLAGGARGKRYALPHATIHF 124

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           H   GG  G A D+ER  +++++I+   N +  ++ GKT EE+ +   RD  M+A EA +
Sbjct: 125 HPAGGGAEGYAPDMERIVKELLRIQELGNSLLARDTGKTVEEITRDFSRDRFMTAEEARE 184

Query: 198 WGVVDKVLMSRI 209
           +G +D +L S+ 
Sbjct: 185 YGFIDAILESKK 196


>gi|299471219|emb|CBN79074.1| chloroplast clp protease P [Ectocarpus siliculosus]
          Length = 292

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 89/203 (43%), Positives = 134/203 (66%)

Query: 7   AKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
            ++   D      P+ +   + G    D+ SRLLK+RI+ +  Q+ D +A ++ AQLL+L
Sbjct: 75  PRRKDPDRPAEAPPVRMPVVDVGGSQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYL 134

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
             ++P K+I+LYINSPGG V+AGMAIYD MQ++   +ST C G AASMG+ LL AG KG 
Sbjct: 135 ANDDPDKDITLYINSPGGSVSAGMAIYDAMQYVPCDVSTVCFGTAASMGAFLLGAGAKGK 194

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           R +LPNARI++HQP GG  GQA+DIE  A++I+ I+  LN    + C +  ++++   DR
Sbjct: 195 RRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFIRSLLNSYMAEYCDQPADKIQDDCDR 254

Query: 187 DHIMSASEACDWGVVDKVLMSRI 209
           D  M+  EA D+G++D+V+ ++ 
Sbjct: 255 DFFMTPEEAMDYGLIDEVVTTKT 277


>gi|33240837|ref|NP_875779.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
 gi|67460521|sp|Q7VAR9|CLPP2_PROMA RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|33238366|gb|AAQ00432.1| Protease subunit of ATP-dependent Clp protease [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
          Length = 200

 Score =  250 bits (638), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 94/193 (48%), Positives = 135/193 (69%), Gaps = 2/193 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP  +  +   ER  DIY+RL  ERI+F+  ++ D +A  + AQ+L+L++E+  K I LY
Sbjct: 8   VPYRLPGSQF-ERWVDIYTRLGAERILFLGQEVTDGVANSLVAQMLYLDSEDSTKPIYLY 66

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDTM+++K  + T C+G AASMG+ LLSAG K  R ALP++RI++H
Sbjct: 67  INSPGGSVTAGLAIYDTMKYVKSDVVTICVGLAASMGAFLLSAGTKNKRLALPHSRIMIH 126

Query: 139 QPSGGF-SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP GG    QASDIE  A++I++IK  LN    +  G+ +E++EK  DRD+ +SA EA D
Sbjct: 127 QPLGGTSQRQASDIEIEAKEILRIKDMLNRSMAEMTGQPFEKIEKDTDRDYFLSAKEAKD 186

Query: 198 WGVVDKVLMSRID 210
           +G++DKV+    +
Sbjct: 187 YGLIDKVISHPNE 199


>gi|224068558|ref|XP_002302770.1| predicted protein [Populus trichocarpa]
 gi|222844496|gb|EEE82043.1| predicted protein [Populus trichocarpa]
          Length = 300

 Score =  250 bits (638), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 91/195 (46%), Positives = 134/195 (68%), Gaps = 6/195 (3%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G  PMV E      R   + S+L + RI+   G ++D MA +I AQLL+L+A +P K+I 
Sbjct: 101 GPPPMVHE------RFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAVDPNKDIV 154

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+NSPGG VTAGMAI+DTM+ I+P +ST C+G AASMG+ LLSAG KG R++LPN+RI+
Sbjct: 155 MYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIM 214

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  G  SDI+  A +++  K  LN     + G++ E++ +  DRD+ MSA EA 
Sbjct: 215 IHQPLGGAQGGQSDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSAKEAK 274

Query: 197 DWGVVDKVLMSRIDI 211
           D+G++D V+++ + +
Sbjct: 275 DYGLIDGVILNPLKV 289


>gi|169625037|ref|XP_001805923.1| hypothetical protein SNOG_15785 [Phaeosphaeria nodorum SN15]
 gi|160705586|gb|EAT76880.2| hypothetical protein SNOG_15785 [Phaeosphaeria nodorum SN15]
          Length = 228

 Score =  250 bits (638), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 109/209 (52%), Positives = 154/209 (73%), Gaps = 2/209 (0%)

Query: 3   FEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQ 62
           F    ++         +P V E    G ++ DI+SRLL+ERI+ + G++ED M+ ++ AQ
Sbjct: 11  FPSHQEQRQSPQAFSPIPYVTESMGGGFKTSDIFSRLLQERIITLNGEVEDSMSAVVIAQ 70

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           LLFLEAENP+K IS+YINSPGG V+AG+AIYDTM +I+ P+ST CMG AASMGSLLL+ G
Sbjct: 71  LLFLEAENPEKPISMYINSPGGSVSAGLAIYDTMNYIRSPVSTTCMGMAASMGSLLLAGG 130

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK--TYEEV 180
           E G R+ LP+AR+++HQPSGG+ G+ASDI  HA++I++I+ RLN IY  +  K  T EE+
Sbjct: 131 EPGQRYILPHARVMIHQPSGGYRGKASDIADHAKEILRIRDRLNRIYQNHLTKERTLEEI 190

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           EK ++RD+ M A EA ++G+VDK++  R+
Sbjct: 191 EKYMERDYYMDAEEAVEFGIVDKIMEKRV 219


>gi|303316037|ref|XP_003068023.1| ATP-dependent Clp protease proteolytic subunit, putative
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240107699|gb|EER25878.1| ATP-dependent Clp protease proteolytic subunit, putative
           [Coccidioides posadasii C735 delta SOWgp]
 gi|320032384|gb|EFW14337.1| ATP-dependent Clp protease [Coccidioides posadasii str. Silveira]
          Length = 237

 Score =  250 bits (638), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 107/200 (53%), Positives = 152/200 (76%), Gaps = 2/200 (1%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
              P V E       +YDI+SRLLKERIV + G++++ ++  I AQLLFLEA+NP+K+IS
Sbjct: 35  TPTPFVTETLGGAWHTYDIFSRLLKERIVCLNGEVDETVSASIVAQLLFLEADNPEKQIS 94

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAG+AIYDTM +I+ P+ST C+GQAASMGSLLL  GE G RF LP++ ++
Sbjct: 95  LYINSPGGSVTAGLAIYDTMTYIQSPVSTICVGQAASMGSLLLCGGEPGKRFCLPHSSVM 154

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK--TYEEVEKTLDRDHIMSASE 194
           +HQPSGG+ GQA+DI  HA++I++++++LNEIY ++  K  + EE+EK ++RD+ M A E
Sbjct: 155 VHQPSGGYFGQATDIAIHAKEILRVRKQLNEIYRRHLTKDMSLEEIEKLMERDYFMGAKE 214

Query: 195 ACDWGVVDKVLMSRIDIEEK 214
           A D G+VD ++  R+  +E+
Sbjct: 215 ALDMGIVDGIMDRRMKPKEE 234


>gi|242035957|ref|XP_002465373.1| hypothetical protein SORBIDRAFT_01g037430 [Sorghum bicolor]
 gi|241919227|gb|EER92371.1| hypothetical protein SORBIDRAFT_01g037430 [Sorghum bicolor]
          Length = 283

 Score =  250 bits (638), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 91/191 (47%), Positives = 132/191 (69%), Gaps = 6/191 (3%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G  PMV+E      R   + S+L + RI+   G +ED MA +I AQLL+L+A +P K+I 
Sbjct: 87  GPSPMVME------RFQSVVSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAIDPTKDII 140

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+NSPGG VTAGMAI+DTM+ I+P +ST C+G AASMG+ LLSAG KG R++LPN+RI+
Sbjct: 141 MYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCIGLAASMGAFLLSAGTKGKRYSLPNSRIM 200

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQ +D+E  A +++  K  LN     + G+  +++    DRD+ MSA EA 
Sbjct: 201 IHQPLGGAQGQETDLEIQANEMLHHKANLNGYLAYHTGQPLDKINVDTDRDYFMSAKEAK 260

Query: 197 DWGVVDKVLMS 207
           ++G++D V+M+
Sbjct: 261 EYGLIDGVIMN 271


>gi|254453571|ref|ZP_05067008.1| Clp protease [Octadecabacter antarcticus 238]
 gi|198267977|gb|EDY92247.1| Clp protease [Octadecabacter antarcticus 238]
          Length = 195

 Score =  250 bits (638), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 114/195 (58%), Positives = 151/195 (77%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MVVEQT RGER+YDI+SRLLKERI+FV G I   M+ LI AQLL LEAENP+KEIS+YIN
Sbjct: 1   MVVEQTARGERAYDIFSRLLKERIIFVNGPIHSGMSHLIVAQLLHLEAENPKKEISMYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGG VTAG++IYDTMQ+IKP +ST   G AASMGS++   GEKGMRFALPNA +++HQP
Sbjct: 61  SPGGEVTAGLSIYDTMQYIKPKVSTLICGMAASMGSVIAIGGEKGMRFALPNAEVMIHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
           SGG  G+A DI   A+ I + + R+ ++YVK+ G++ + V+K LDRD  M+  EA +WG 
Sbjct: 121 SGGSQGKAEDILISARHIERTRERMYQLYVKHSGQSLKTVQKALDRDLWMTPLEAKEWGH 180

Query: 201 VDKVLMSRIDIEEKS 215
           +D+++ +R   ++K+
Sbjct: 181 LDEIVENRAKEDDKT 195


>gi|242206306|ref|XP_002469009.1| predicted protein [Postia placenta Mad-698-R]
 gi|220731874|gb|EED85714.1| predicted protein [Postia placenta Mad-698-R]
          Length = 200

 Score =  250 bits (638), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 113/199 (56%), Positives = 147/199 (73%), Gaps = 9/199 (4%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MV+EQT RGERSYDI+SRLL+ER++ + G I D  + L  AQLLFLEAE   K I LYIN
Sbjct: 1   MVIEQTGRGERSYDIFSRLLRERVIMLYGPIRDTDSALTVAQLLFLEAEETSKPIHLYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGG VTAG+AIYDT  ++  PI T+C+GQA SMGSLLL+AGEKG R ALP++ I++HQP
Sbjct: 61  SPGGSVTAGLAIYDT--YVSSPIHTYCVGQACSMGSLLLAAGEKGKRHALPHSTIMIHQP 118

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK-------TLDRDHIMSAS 193
           SGG SGQASDI  HA++I+++++ L  IY ++CGK  E VE         L+RD+ M+A 
Sbjct: 119 SGGASGQASDIVIHAKEILRVRQLLTGIYQRHCGKDGESVEAGVQRFETALERDYFMTAQ 178

Query: 194 EACDWGVVDKVLMSRIDIE 212
           EA ++G+VD VL  R  ++
Sbjct: 179 EAREFGIVDSVLEKRPKLD 197


>gi|320161063|ref|YP_004174287.1| ATP-dependent Clp protease proteolytic subunit [Anaerolinea
           thermophila UNI-1]
 gi|319994916|dbj|BAJ63687.1| ATP-dependent Clp protease proteolytic subunit [Anaerolinea
           thermophila UNI-1]
          Length = 201

 Score =  250 bits (638), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 105/197 (53%), Positives = 143/197 (72%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
            S   F  ++PMV+E + RGER+YDIYS LLKERIVFV   I+D +A LI AQLLFL  E
Sbjct: 1   MSIPDFRSVIPMVIESSARGERAYDIYSLLLKERIVFVGTPIDDQIANLIVAQLLFLSRE 60

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           +P+K+I +YIN PGG++ AGMAIYDTMQ I   IST  +G  AS G++LL+AG KG R+A
Sbjct: 61  DPEKDIQMYINCPGGLIYAGMAIYDTMQMIPNRISTVAVGVTASFGTVLLAAGSKGQRYA 120

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LP+A I +HQP GG  GQASDIE  A++I+++K +LN+I  +  G+  + +E+  +RD  
Sbjct: 121 LPHATIHMHQPLGGAQGQASDIEIQAREILRLKSQLNQILSQCTGQPMDVIERDTERDFY 180

Query: 190 MSASEACDWGVVDKVLM 206
           M + +A ++G+VDKVL 
Sbjct: 181 MDSYQAVEYGLVDKVLE 197


>gi|228470612|ref|ZP_04055469.1| Clp protease [Porphyromonas uenonis 60-3]
 gi|228307739|gb|EEK16715.1| Clp protease [Porphyromonas uenonis 60-3]
          Length = 221

 Score =  250 bits (638), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 92/197 (46%), Positives = 139/197 (70%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  ++ D+ A +I AQLL+L+  +P K+IS+YI
Sbjct: 19  PTIIEERQLNVAQMDVFSRLMMDRIIFLGTEVNDYTANVIQAQLLYLDNADPGKDISIYI 78

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V AG  IYDTMQ++   +ST C G AASM ++LL AG +G R+ALP++R+++HQ
Sbjct: 79  NSPGGSVYAGFGIYDTMQYVGCDVSTMCTGMAASMAAVLLVAGAEGKRYALPHSRVMIHQ 138

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I+K+K  L +I   + G++ EE+E+  DRD  M+ASEA ++G
Sbjct: 139 PMGGMQGQASDIEIAAKEILKVKAELYKIIADHSGRSVEEIERDSDRDKWMTASEALEYG 198

Query: 200 VVDKVLMSRIDIEEKSK 216
           ++DKVL S     ++ K
Sbjct: 199 MIDKVLTSTKQTAKEKK 215


>gi|156743343|ref|YP_001433472.1| endopeptidase Clp [Roseiflexus castenholzii DSM 13941]
 gi|156234671|gb|ABU59454.1| Endopeptidase Clp [Roseiflexus castenholzii DSM 13941]
          Length = 203

 Score =  249 bits (637), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 88/192 (45%), Positives = 133/192 (69%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            VP +VE+T RGERS+D++SRLL+ERI+ +   I+D +A+LI AQLL+L+  +P ++I  
Sbjct: 5   PVPTIVERTPRGERSWDLFSRLLQERIILLGTPIDDEVASLIVAQLLYLQHTDPDRDIWF 64

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+AIYDTM+ I P + T C+G+A SM ++LL+ G +G R+ALPNA I  
Sbjct: 65  YINSPGGSVRDGLAIYDTMKLISPDVCTVCIGRAGSMATILLAGGARGKRYALPNATIHF 124

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           H   GG  G A D+ER  +++++I+   N +  ++ G+T EE+ +   RD  M+A EA +
Sbjct: 125 HPAGGGAEGYAPDMERIVRELLRIQELGNSLLARDTGRTVEEITRDFSRDRFMTAQEARE 184

Query: 198 WGVVDKVLMSRI 209
           +G +D +L S+ 
Sbjct: 185 YGFIDAILESKK 196


>gi|119177332|ref|XP_001240455.1| ATP-dependent Clp protease proteolytic subunit [Coccidioides
           immitis RS]
          Length = 237

 Score =  249 bits (637), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 107/200 (53%), Positives = 152/200 (76%), Gaps = 2/200 (1%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
              P V E       +YDI+SRLLKERIV + G++++ ++  I AQLLFLEA+NP+K+IS
Sbjct: 35  TPTPFVTETLGGAWHTYDIFSRLLKERIVCLNGEVDETVSASIVAQLLFLEADNPEKQIS 94

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAG+AIYDTM +I+ P+ST C+GQAASMGSLLL  GE G RF LP++ ++
Sbjct: 95  LYINSPGGSVTAGLAIYDTMTYIQSPVSTICIGQAASMGSLLLCGGEPGKRFCLPHSSVM 154

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK--TYEEVEKTLDRDHIMSASE 194
           +HQPSGG+ GQA+DI  HA++I++++++LNEIY ++  K  + EE+EK ++RD+ M A E
Sbjct: 155 VHQPSGGYFGQATDIAIHAKEILRVRKQLNEIYRRHLTKDMSLEEIEKLMERDYFMGAKE 214

Query: 195 ACDWGVVDKVLMSRIDIEEK 214
           A D G+VD ++  R+  +E+
Sbjct: 215 ALDMGIVDGIMDRRMKPKEE 234


>gi|52082177|ref|YP_080968.1| ATP-dependent protease proteolytic subunit [Bacillus licheniformis
           ATCC 14580]
 gi|52787568|ref|YP_093397.1| hypothetical protein BLi03890 [Bacillus licheniformis ATCC 14580]
 gi|319648053|ref|ZP_08002270.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus sp.
           BT1B_CT2]
 gi|67460467|sp|Q65E10|CLPP2_BACLD RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|52005388|gb|AAU25330.1| ATP-dependentprotease proteolytic subunit (class III heat-shock
           protein) [Bacillus licheniformis ATCC 14580]
 gi|52350070|gb|AAU42704.1| hypothetical protein BLi03890 [Bacillus licheniformis ATCC 14580]
 gi|317389688|gb|EFV70498.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus sp.
           BT1B_CT2]
          Length = 190

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 91/190 (47%), Positives = 137/190 (72%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P V+E+T  GERSYDI+SRLLK+RI+ +  +  D +A  + AQLLFL AE+ +K+I
Sbjct: 1   MNTIPYVIEKTAAGERSYDIFSRLLKDRIIMIGSEFNDDLANRVTAQLLFLSAEDNEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           S+YINSPGG  +AG AI DTM ++KP + T C+G AASMG++LL+ G KG R+AL N+ I
Sbjct: 61  SIYINSPGGSTSAGYAILDTMDYVKPDVRTICVGMAASMGAILLAGGAKGKRYALKNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+D+E  A+ I+K++ ++   + +  G+  E+++  ++RD+ M A EA
Sbjct: 121 MIHQPLGGVKGQATDMEISAKRIIKLREKIERFFHERTGQPIEKLKADMERDYFMDADEA 180

Query: 196 CDWGVVDKVL 205
             +GV+D VL
Sbjct: 181 KAYGVIDAVL 190


>gi|297843050|ref|XP_002889406.1| hypothetical protein ARALYDRAFT_887394 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297335248|gb|EFH65665.1| hypothetical protein ARALYDRAFT_887394 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 298

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 91/191 (47%), Positives = 131/191 (68%), Gaps = 6/191 (3%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G  PMV E      R   I S+L + RI+   G ++D MA +I AQLL+L+A +P K+I 
Sbjct: 103 GPPPMVQE------RFQSIISQLFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPTKDIV 156

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+NSPGG VTAGMAI+DTM+ I+P +ST C+G AASMG+ LLSAG KG R++LPN+RI+
Sbjct: 157 MYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIM 216

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  G  +DI+  A +++  K  LN     + G++ E++ +  DRD  MSA EA 
Sbjct: 217 IHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDFFMSAKEAK 276

Query: 197 DWGVVDKVLMS 207
           ++G++D V+M+
Sbjct: 277 EYGLIDGVIMN 287


>gi|18378982|ref|NP_563657.1| CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5); serine-type endopeptidase
           [Arabidopsis thaliana]
 gi|75313059|sp|Q9S834|CLPP5_ARATH RecName: Full=ATP-dependent Clp protease proteolytic subunit 5,
           chloroplastic; AltName: Full=Endopeptidase ClpP5;
           Short=nClpP5; AltName: Full=nClpP1; Flags: Precursor
 gi|9972387|gb|AAG10637.1|AC022521_15 ATP-dependent Clp protease subunit ClpP [Arabidopsis thaliana]
 gi|4887543|emb|CAB43488.1| ATP-dependent Clp protease subunit ClpP [Arabidopsis thaliana]
 gi|5360579|dbj|BAA82065.1| nClpP1 [Arabidopsis thaliana]
 gi|21536639|gb|AAM60971.1| ATP-dependent Clp protease proteolytic subunit ClpP5 [Arabidopsis
           thaliana]
 gi|89274139|gb|ABD65590.1| At1g02560 [Arabidopsis thaliana]
 gi|332189323|gb|AEE27444.1| ATP-dependent Clp protease, protease subunit [Arabidopsis thaliana]
          Length = 298

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 91/191 (47%), Positives = 131/191 (68%), Gaps = 6/191 (3%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G  PMV E      R   I S+L + RI+   G ++D MA +I AQLL+L+A +P K+I 
Sbjct: 103 GPPPMVQE------RFQSIISQLFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPTKDIV 156

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+NSPGG VTAGMAI+DTM+ I+P +ST C+G AASMG+ LLSAG KG R++LPN+RI+
Sbjct: 157 MYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIM 216

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  G  +DI+  A +++  K  LN     + G++ E++ +  DRD  MSA EA 
Sbjct: 217 IHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDFFMSAKEAK 276

Query: 197 DWGVVDKVLMS 207
           ++G++D V+M+
Sbjct: 277 EYGLIDGVIMN 287


>gi|284018074|sp|Q27539|CLPP1_CAEEL RecName: Full=ATP-dependent Clp protease proteolytic subunit 1,
           mitochondrial; AltName: Full=Endopeptidase Clp; Flags:
           Precursor
          Length = 221

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 110/186 (59%), Positives = 149/186 (80%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V++   +GER+YDIYSRLL++RIV +   ++D +A+ + AQLLFL++E+ +K I +Y
Sbjct: 26  IPFVIDNEGKGERTYDIYSRLLRDRIVCLMTPVDDFIASALIAQLLFLQSESGKKPIHMY 85

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDT+Q I  P+ST+ +GQA+SMGSLLL AGEKGMR ALPN+RI++H
Sbjct: 86  INSPGGSVTAGLAIYDTIQMISAPVSTWVIGQASSMGSLLLCAGEKGMRSALPNSRIMVH 145

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  G  SDI   A++I ++KRRLNEIYV + G +Y+E+EKTLDRD  MSA EA  +
Sbjct: 146 QPSGGAQGTCSDIVIRAEEITRLKRRLNEIYVHHTGMSYDEIEKTLDRDRFMSAHEALKF 205

Query: 199 GVVDKV 204
           G+VD++
Sbjct: 206 GLVDQI 211


>gi|299140390|ref|ZP_07033550.1| Endopeptidase Clp [Acidobacterium sp. MP5ACTX8]
 gi|298597640|gb|EFI53818.1| Endopeptidase Clp [Acidobacterium sp. MP5ACTX8]
          Length = 191

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 104/188 (55%), Positives = 149/188 (79%), Gaps = 1/188 (0%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MV+EQT+RGERSYDIYSRLL++ I+F+   I+D++A LI AQ+LFL  E+P+K+I LYIN
Sbjct: 1   MVLEQTSRGERSYDIYSRLLRDNIIFLGTPIDDNVANLIIAQMLFLSGEDPEKDIQLYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGG ++AG+AIYDTMQ+IK  + TFC+GQAASMG+ LL AG+KG RF LPN+RIL+HQP
Sbjct: 61  SPGGSISAGLAIYDTMQYIKNDVVTFCIGQAASMGAFLLMAGKKGKRFTLPNSRILIHQP 120

Query: 141 S-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           S GG  GQA+DI+ HA++I++I+   N +   N G+  + +E+ ++RD IM+A +A ++G
Sbjct: 121 SMGGLGGQATDIDIHAREILRIRELTNRLMSANTGQPLDRIERDVERDFIMTAPQAKEYG 180

Query: 200 VVDKVLMS 207
           ++D ++  
Sbjct: 181 IIDDIIDR 188


>gi|222624791|gb|EEE58923.1| hypothetical protein OsJ_10573 [Oryza sativa Japonica Group]
          Length = 282

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 91/191 (47%), Positives = 132/191 (69%), Gaps = 6/191 (3%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G  PMV+E      R   + S+L + RI+   G +ED MA +I AQLL+L+A +P K+I 
Sbjct: 86  GPSPMVME------RFQSVVSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAIDPNKDII 139

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+NSPGG VTAGMAI+DTM+ I+P +ST C+G AASMG+ LLSAG KG R++LPN+RI+
Sbjct: 140 MYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCIGLAASMGAFLLSAGTKGKRYSLPNSRIM 199

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQ +D+E  A +++  K  LN     + G+  +++    DRD+ MSA EA 
Sbjct: 200 IHQPLGGAQGQETDLEIQANEMLHHKANLNGYLAYHTGQPLDKINVDTDRDYFMSAKEAK 259

Query: 197 DWGVVDKVLMS 207
           ++G++D V+M+
Sbjct: 260 EYGLIDGVIMN 270


>gi|297600816|ref|NP_001049902.2| Os03g0308100 [Oryza sativa Japonica Group]
 gi|63003513|dbj|BAD98161.1| ATP-dependent protease [Oryza sativa Japonica Group]
 gi|108707751|gb|ABF95546.1| ATP-dependent Clp protease proteolytic subunit 1, putative,
           expressed [Oryza sativa Japonica Group]
 gi|215740983|dbj|BAG97478.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215765780|dbj|BAG87477.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255674452|dbj|BAF11816.2| Os03g0308100 [Oryza sativa Japonica Group]
          Length = 282

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 91/191 (47%), Positives = 132/191 (69%), Gaps = 6/191 (3%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G  PMV+E      R   + S+L + RI+   G +ED MA +I AQLL+L+A +P K+I 
Sbjct: 86  GPSPMVME------RFQSVVSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAIDPNKDII 139

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+NSPGG VTAGMAI+DTM+ I+P +ST C+G AASMG+ LLSAG KG R++LPN+RI+
Sbjct: 140 MYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCIGLAASMGAFLLSAGTKGKRYSLPNSRIM 199

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQ +D+E  A +++  K  LN     + G+  +++    DRD+ MSA EA 
Sbjct: 200 IHQPLGGAQGQETDLEIQANEMLHHKANLNGYLAYHTGQPLDKINVDTDRDYFMSAKEAK 259

Query: 197 DWGVVDKVLMS 207
           ++G++D V+M+
Sbjct: 260 EYGLIDGVIMN 270


>gi|17538017|ref|NP_496215.1| CLP Protease family member (clpp-1) [Caenorhabditis elegans]
 gi|3881896|emb|CAA88886.1| C. elegans protein ZK970.2a, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 206

 Score =  249 bits (636), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 110/186 (59%), Positives = 149/186 (80%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V++   +GER+YDIYSRLL++RIV +   ++D +A+ + AQLLFL++E+ +K I +Y
Sbjct: 11  IPFVIDNEGKGERTYDIYSRLLRDRIVCLMTPVDDFIASALIAQLLFLQSESGKKPIHMY 70

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDT+Q I  P+ST+ +GQA+SMGSLLL AGEKGMR ALPN+RI++H
Sbjct: 71  INSPGGSVTAGLAIYDTIQMISAPVSTWVIGQASSMGSLLLCAGEKGMRSALPNSRIMVH 130

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  G  SDI   A++I ++KRRLNEIYV + G +Y+E+EKTLDRD  MSA EA  +
Sbjct: 131 QPSGGAQGTCSDIVIRAEEITRLKRRLNEIYVHHTGMSYDEIEKTLDRDRFMSAHEALKF 190

Query: 199 GVVDKV 204
           G+VD++
Sbjct: 191 GLVDQI 196


>gi|159900345|ref|YP_001546592.1| endopeptidase Clp [Herpetosiphon aurantiacus ATCC 23779]
 gi|159893384|gb|ABX06464.1| Endopeptidase Clp [Herpetosiphon aurantiacus ATCC 23779]
          Length = 218

 Score =  249 bits (636), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 83/204 (40%), Positives = 133/204 (65%)

Query: 4   EGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQL 63
                  +      +VP VVE ++RGER YDIYSRLLKERI+ +   I+  +A ++ AQL
Sbjct: 8   SPAHDIVAAKSPSMVVPYVVETSSRGERVYDIYSRLLKERIIILGTPIDSQIANVLVAQL 67

Query: 64  LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           LFL+ ++P ++IS+YINSPGG V AG+AIYDTMQ + P I+T+C+G A SM + +L+ G 
Sbjct: 68  LFLQHDDPDRDISIYINSPGGEVNAGLAIYDTMQMVSPDIATWCVGFAGSMATPVLAGGT 127

Query: 124 KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
           KG R++LPN+ I +H   GG  G A D+E   +++++++  +  +  K+ G+  E + + 
Sbjct: 128 KGKRYSLPNSTIHMHPAGGGARGYAPDVEIQIKELLRLQNIVRGLLAKDTGQPIERIARD 187

Query: 184 LDRDHIMSASEACDWGVVDKVLMS 207
            DRD  M+  +A ++G++D++   
Sbjct: 188 FDRDLFMTPEQAKEYGIIDEITTH 211


>gi|257058851|ref|YP_003136739.1| ATP-dependent Clp protease proteolytic subunit [Cyanothece sp. PCC
           8802]
 gi|256589017|gb|ACU99903.1| Endopeptidase Clp [Cyanothece sp. PCC 8802]
          Length = 199

 Score =  249 bits (636), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 98/195 (50%), Positives = 138/195 (70%), Gaps = 2/195 (1%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP  +  +   ER  DIY+RL +ERI+F+  ++ D +A  I A LL+L++E+P K I
Sbjct: 5   VPSVPYRLPGSQY-ERWIDIYTRLSQERIIFLGQEVTDGLANRIVAFLLYLDSEDPGKPI 63

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMAIYDTMQ+IK  + T C+G AASMG+ LL++G  G R ALP+ARI
Sbjct: 64  YLYINSPGGSVTAGMAIYDTMQYIKSDVITICVGLAASMGAFLLASGTPGKRLALPHARI 123

Query: 136 LLHQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           ++HQP GG    QA+DI+  A +I++I+++LNEI     G+T E+++K  DRD+ MSA E
Sbjct: 124 MIHQPMGGTGRRQATDIQIEANEILRIRQQLNEILAYKTGQTIEKIQKDTDRDYYMSAEE 183

Query: 195 ACDWGVVDKVLMSRI 209
           A  +G++DKV+  R 
Sbjct: 184 AQAYGLIDKVIEDRT 198


>gi|72382719|ref|YP_292074.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus str. NATL2A]
 gi|124026440|ref|YP_001015555.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus str. NATL1A]
 gi|115311347|sp|Q46JF7|CLPP2_PROMT RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|72002569|gb|AAZ58371.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Prochlorococcus marinus str. NATL2A]
 gi|123961508|gb|ABM76291.1| Clp protease proteolytic subunit [Prochlorococcus marinus str.
           NATL1A]
          Length = 200

 Score =  249 bits (636), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 94/193 (48%), Positives = 137/193 (70%), Gaps = 2/193 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP  +  +   ER  DIY+RL  ERI+F+  ++ D +A  + AQ+L+L++E+  K I LY
Sbjct: 8   VPYRLPGSQF-ERWVDIYTRLGAERILFLGQEVNDGIANSLVAQMLYLDSEDSSKPIYLY 66

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDTM+++K  + T C+G AASMG+ LLSAG KG R ALP++RI++H
Sbjct: 67  INSPGGSVTAGLAIYDTMKYVKSDLVTICVGLAASMGAFLLSAGTKGKRLALPHSRIMIH 126

Query: 139 QP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP  G    QASDIE  A++I++IK  LN+   +  G+TYE++EK  DRD+ +SA EA +
Sbjct: 127 QPLGGTAQRQASDIEIEAREILRIKEMLNKSMAEMTGQTYEKIEKDTDRDYFLSAEEAKN 186

Query: 198 WGVVDKVLMSRID 210
           +G++D+V+    +
Sbjct: 187 YGLIDRVITHPSE 199


>gi|16331162|ref|NP_441890.1| ATP-dependent Clp protease proteolytic subunit [Synechocystis sp.
           PCC 6803]
 gi|3023511|sp|P74467|CLPP3_SYNY3 RecName: Full=Probable ATP-dependent Clp protease proteolytic
           subunit 3; AltName: Full=Endopeptidase Clp 3
 gi|1653656|dbj|BAA18568.1| ATP-dependent Clp protease proteolytic subunit [Synechocystis sp.
           PCC 6803]
          Length = 202

 Score =  249 bits (636), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 96/192 (50%), Positives = 140/192 (72%), Gaps = 3/192 (1%)

Query: 19  VPMVVEQTNRG--ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +      ER  DIY+RL +ERI+F+  ++ D +A  I A LL+L++++P K I 
Sbjct: 5   VPSVPFRLPGSQYERWIDIYTRLSQERIIFLGQEVNDSIANRIVAFLLYLDSDDPSKPIY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGMAIYDTMQ+IK  + T C+G AASMG+ LL++G  G R ALP+ARI+
Sbjct: 65  LYINSPGGSVTAGMAIYDTMQYIKAEVITICVGLAASMGAFLLASGAPGKRLALPHARIM 124

Query: 137 LHQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP GG    QA+DI+  A++I++I+++LNEI  +  G+T E++ K  DRD+ +SA+EA
Sbjct: 125 IHQPMGGTGRRQATDIDIEAREILRIRQQLNEIMAQRTGQTVEKIAKDTDRDYFLSAAEA 184

Query: 196 CDWGVVDKVLMS 207
            ++G++DKV+ +
Sbjct: 185 KEYGLIDKVIEN 196


>gi|332177296|gb|AEE12986.1| ATP-dependent Clp protease proteolytic subunit [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 238

 Score =  249 bits (636), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 91/197 (46%), Positives = 139/197 (70%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  ++ D+ A +I AQLL+L+  +P K+IS+YI
Sbjct: 36  PTIIEERQLNVAQMDVFSRLMMDRIIFLGTEVNDYTANVIQAQLLYLDNADPGKDISIYI 95

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V AG  IYDTMQ++   +ST C G AASM ++LL AG +G R+ALP++R+++HQ
Sbjct: 96  NSPGGSVYAGFGIYDTMQYVGCDVSTMCTGMAASMAAVLLVAGAEGKRYALPHSRVMIHQ 155

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I+K+K  L +I   + G++ E++E+  DRD  M+ASEA ++G
Sbjct: 156 PMGGMQGQASDIEIAAKEILKVKAELYKIIADHSGRSVEDIERDSDRDKWMTASEALEYG 215

Query: 200 VVDKVLMSRIDIEEKSK 216
           ++DKVL S   + +  K
Sbjct: 216 MIDKVLTSTKQVAKDKK 232


>gi|313885801|ref|ZP_07819544.1| endopeptidase Clp [Porphyromonas asaccharolytica PR426713P-I]
 gi|312924705|gb|EFR35471.1| endopeptidase Clp [Porphyromonas asaccharolytica PR426713P-I]
          Length = 238

 Score =  249 bits (636), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 91/197 (46%), Positives = 139/197 (70%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  ++ D+ A +I AQLL+L+  +P K+IS+YI
Sbjct: 36  PTIIEERQLNVAQMDVFSRLMMDRIIFLGTEVNDYTANVIQAQLLYLDNADPGKDISIYI 95

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V AG  IYDTMQ++   +ST C G AASM ++LL AG +G R+ALP++R+++HQ
Sbjct: 96  NSPGGSVYAGFGIYDTMQYVGCDVSTMCTGMAASMAAVLLVAGAEGKRYALPHSRVMIHQ 155

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I+K+K  L +I   + G++ E++E+  DRD  M+ASEA ++G
Sbjct: 156 PMGGMQGQASDIEIAAKEILKVKAELYKIIADHSGRSVEDIERDSDRDKWMTASEALEYG 215

Query: 200 VVDKVLMSRIDIEEKSK 216
           ++DKVL S   + +  K
Sbjct: 216 MIDKVLTSTKQVAKDKK 232


>gi|225437581|ref|XP_002277104.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297743987|emb|CBI36957.3| unnamed protein product [Vitis vinifera]
          Length = 289

 Score =  248 bits (634), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 88/191 (46%), Positives = 130/191 (68%), Gaps = 6/191 (3%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G  PMV E      R   + S+L + RI+   G ++D MA +I AQLL+L+A +P K+I 
Sbjct: 91  GPPPMVQE------RFQSVVSQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAVDPDKDIV 144

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+NSPGG VTAGMAI+DTM+ I+P +ST C+G AASMG+ LLS G KG R++LPN+RI+
Sbjct: 145 MYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASMGAFLLSCGTKGKRYSLPNSRIM 204

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  G  +DI+  A +++  K  LN     + G++ E++ +  DRD  MSA EA 
Sbjct: 205 IHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLSYHTGQSLEKINQDTDRDFFMSAKEAK 264

Query: 197 DWGVVDKVLMS 207
           ++G++D V+++
Sbjct: 265 EYGLIDGVILN 275


>gi|254495062|ref|ZP_05107986.1| Clp protease [Polaribacter sp. MED152]
 gi|85819412|gb|EAQ40569.1| Clp protease [Polaribacter sp. MED152]
          Length = 219

 Score =  248 bits (634), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 98/205 (47%), Positives = 139/205 (67%)

Query: 4   EGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQL 63
            G +      +   L P ++E+        D++SRL+ +RI+F+   I D +A +I AQL
Sbjct: 15  HGISSTSYTKITSSLTPYIMEERQMNITQMDVFSRLMMDRIIFLGTGINDQVANIIQAQL 74

Query: 64  LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           LFLE+ +  K+IS+YINSPGG V AG+ IYDTMQFIKP ++T C G AASMG++L+ AGE
Sbjct: 75  LFLESVDANKDISIYINSPGGGVYAGLGIYDTMQFIKPDVATICTGMAASMGAVLMCAGE 134

Query: 124 KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
           KG R ALP++RI++HQP GG  GQASDIE  A++I+K+K  L  I   + G+T E+V   
Sbjct: 135 KGKRSALPHSRIMIHQPLGGAQGQASDIEITAREILKLKDELYAIIANHSGQTVEKVHND 194

Query: 184 LDRDHIMSASEACDWGVVDKVLMSR 208
            DRD+ M A EA ++G++D+VL  +
Sbjct: 195 SDRDYWMKADEAKEYGMIDEVLARK 219


>gi|262192152|ref|ZP_06050312.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae CT
           5369-93]
 gi|262031941|gb|EEY50519.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae CT
           5369-93]
          Length = 167

 Score =  248 bits (634), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 100/167 (59%), Positives = 132/167 (79%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPI 103
           ++F+TGQ+EDHMA L+ AQLLFLE+ENP K+I LYINSPGG VTAGM+IYDTMQFIKP +
Sbjct: 1   MIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNV 60

Query: 104 STFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKR 163
           ST CMGQA SMG+ LL+ G  G R+ LPN+R+++HQP GGF GQASDI+ HAQ+I+ IK 
Sbjct: 61  STVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKN 120

Query: 164 RLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           +LN +  ++ G+  E +E+  DRD+ MSA +A ++G+VD VL  R +
Sbjct: 121 KLNRLLAEHTGQPIEVIERDTDRDNFMSADQAVEYGLVDAVLKHRGE 167


>gi|223973663|gb|ACN31019.1| unknown [Zea mays]
          Length = 280

 Score =  248 bits (634), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 91/191 (47%), Positives = 132/191 (69%), Gaps = 6/191 (3%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G  PMV+E      R   + S+L + RI+   G +ED MA +I AQLL+L+A +P K+I 
Sbjct: 84  GPSPMVME------RFQSVVSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAIDPTKDII 137

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+NSPGG VTAGMAI+DTM+ I+P +ST C+G AASMG+ LLSAG KG R++LPN+RI+
Sbjct: 138 MYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCIGLAASMGAFLLSAGTKGKRYSLPNSRIM 197

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQ +D+E  A +++  K  LN     + G+  +++    DRD+ MSA EA 
Sbjct: 198 IHQPLGGAQGQETDLEIQANEMLHHKANLNGYLAYHTGQPLDKINVDTDRDYFMSAKEAK 257

Query: 197 DWGVVDKVLMS 207
           ++G++D V+M+
Sbjct: 258 EYGLIDGVIMN 268


>gi|295105645|emb|CBL03189.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Faecalibacterium prausnitzii SL3/3]
          Length = 198

 Score =  248 bits (634), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 99/198 (50%), Positives = 148/198 (74%), Gaps = 5/198 (2%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP VVEQ+  GERSYDI+SRLL +RI+ ++  + D  A+L+ AQLL+LE ++P K+I
Sbjct: 1   MSFVPYVVEQSAHGERSYDIFSRLLNDRIIVLSEDVNDTTASLVVAQLLYLEGQDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG ++AGMAI+DTMQ+IK  +ST CMG AASMG+ LL++G KG RFALPNA I
Sbjct: 61  SLYINSPGGSISAGMAIHDTMQYIKCDVSTICMGMAASMGAFLLASGTKGKRFALPNAEI 120

Query: 136 LLHQP-----SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           ++HQP      GG SGQ +DI+ HA+ +V I+ ++N +  +  G+  E++++  +RD+ +
Sbjct: 121 MIHQPLIGGQGGGLSGQTTDIKIHAEHMVYIRDKMNRMLSEYTGQPLEKIQQDTERDNYL 180

Query: 191 SASEACDWGVVDKVLMSR 208
           +A +A ++G++D+V+  R
Sbjct: 181 TAQQAKEYGLIDEVIAHR 198


>gi|257077641|ref|ZP_05572002.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis JH1]
 gi|256985671|gb|EEU72973.1| ATP-dependent Clp protease proteolytic subunit [Enterococcus
           faecalis JH1]
          Length = 176

 Score =  248 bits (634), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 96/176 (54%), Positives = 137/176 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQ++RGER+YDIYSRLLK+RI+ ++G I+D++A  + AQLLFL+A++ +K+I
Sbjct: 1   MNLIPTVIEQSSRGERAYDIYSRLLKDRIIMLSGPIDDNVANSVIAQLLFLDAQDSEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG V+AG+AI+DTM F+K  + T  +G AASMGS LL+AG+KG RFALPNA I
Sbjct: 61  YLYINSPGGSVSAGLAIFDTMNFVKADVQTIVLGMAASMGSFLLTAGQKGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           ++HQP GG  GQA++IE  A+ I+  ++RLN I  +  G+  E +E+  DRD+ M+
Sbjct: 121 MIHQPLGGAQGQATEIEIAARHILDTRQRLNSILAERTGQPIEVIERDTDRDNYMT 176


>gi|331211899|ref|XP_003307219.1| ATP-dependent Clp protease proteolytic subunit 2 [Puccinia graminis
           f. sp. tritici CRL 75-36-700-3]
 gi|309297622|gb|EFP74213.1| ATP-dependent Clp protease proteolytic subunit 2 [Puccinia graminis
           f. sp. tritici CRL 75-36-700-3]
          Length = 257

 Score =  248 bits (633), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 114/208 (54%), Positives = 150/208 (72%), Gaps = 9/208 (4%)

Query: 16  LGLVPMVVEQTNRG-ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
            GLVPMV+E+  RG ER++DI+SRLL+ER++FV G+I D  A LI AQLL+LEAE+P   
Sbjct: 51  SGLVPMVIEREGRGGERAFDIFSRLLRERVIFVGGEINDADANLIVAQLLYLEAESPD-P 109

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I LYINSPGG VTAG+AIYDTMQ+++ P+ T C+GQA SMGS+LL AG KG R ALPN+ 
Sbjct: 110 IELYINSPGGSVTAGLAIYDTMQYVRSPVHTICIGQACSMGSILLGAGAKGFRKALPNST 169

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYE-------EVEKTLDRD 187
           I++HQPSGG SGQASD+   A +I+++K+RL EIY K+CGK  E         E+ L+RD
Sbjct: 170 IMIHQPSGGSSGQASDMAIRANEILRLKKRLIEIYAKHCGKEDESQTDRCNRFEQALERD 229

Query: 188 HIMSASEACDWGVVDKVLMSRIDIEEKS 215
             M    A  +G++D+V+ SR      +
Sbjct: 230 KFMDGESAQAFGIIDQVVASRSSKPNDN 257


>gi|327462069|gb|EGF08398.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           sanguinis SK1057]
          Length = 196

 Score =  248 bits (633), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 95/192 (49%), Positives = 141/192 (73%), Gaps = 2/192 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDNTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  L+
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGVAASMGTVIASSGAKGKRFMLPNAEYLI 120

Query: 138 HQPSGGF--SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP GG     Q +D+   A+ +++ +  L +I  +N GK+ E++ K  +RD+ MSA E 
Sbjct: 121 HQPMGGAGSGTQQTDMAIVAEHLLRTRNTLEKILAENSGKSVEQIHKDAERDYWMSAQET 180

Query: 196 CDWGVVDKVLMS 207
            ++G +D+++ +
Sbjct: 181 LEYGFIDEIMEN 192


>gi|301060520|ref|ZP_07201360.1| ATP-dependent Clp protease, proteolytic subunit ClpP [delta
           proteobacterium NaphS2]
 gi|300445363|gb|EFK09288.1| ATP-dependent Clp protease, proteolytic subunit ClpP [delta
           proteobacterium NaphS2]
          Length = 202

 Score =  248 bits (633), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 106/191 (55%), Positives = 153/191 (80%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+PMV+EQ++RGER+YDIYSRLLK+RI+F+T Q+ D MA  + AQ+LFLE+E+P+K+I +
Sbjct: 2   LIPMVIEQSSRGERAYDIYSRLLKDRIIFITDQVADPMANTVIAQMLFLESEDPEKDIHM 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+AIYDTMQ+IKP ++T CMGQ +SM +LLL+AG K  R+ALP++RI++
Sbjct: 62  YINSPGGSVTAGLAIYDTMQYIKPDVATICMGQTSSMAALLLAAGAKEKRYALPHSRIMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DI+ HA++I+KI+  LN+I  ++ G   + + K  +RD  M + +A D
Sbjct: 122 HQPLGGAQGQATDIDIHAREILKIRDNLNQILAEHTGTDIKRIRKDTERDFFMDSQQAKD 181

Query: 198 WGVVDKVLMSR 208
           +G++D+V+  R
Sbjct: 182 YGIIDRVIHKR 192


>gi|291515533|emb|CBK64743.1| ATP-dependent Clp protease proteolytic subunit ClpP [Alistipes
           shahii WAL 8301]
          Length = 222

 Score =  248 bits (633), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 94/191 (49%), Positives = 136/191 (71%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+      + D++SRL+ +RI+F+   I D  A +I AQLLFLE+ +P+K+I +YI
Sbjct: 32  PTIIEERQLNIATMDVFSRLMMDRIIFLGAPIYDDAANIIQAQLLFLESVDPEKDIQIYI 91

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V+AG+ IYDTMQ +   ++T C G AASMG++LL+AG KG R ALP++R+++HQ
Sbjct: 92  NSPGGSVSAGLGIYDTMQLVNSDVATICTGLAASMGAVLLTAGAKGKRSALPHSRVMIHQ 151

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I+K KR L EI   + G   +++EK  DRD+ +SA EA D+G
Sbjct: 152 PLGGAQGQASDIEITAREILKTKRELYEILSVHSGVPVKKIEKDADRDYWLSAREAKDYG 211

Query: 200 VVDKVLMSRID 210
           ++D+VL  R  
Sbjct: 212 LIDEVLSKRDK 222


>gi|328767510|gb|EGF77559.1| hypothetical protein BATDEDRAFT_91564 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 251

 Score =  248 bits (633), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 113/200 (56%), Positives = 149/200 (74%), Gaps = 11/200 (5%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+E + RGER +DI+SRLLKERIV + G+++D ++ +I AQLLFLEAENP+K IS Y
Sbjct: 21  IPYVIESSARGERVFDIFSRLLKERIVMLNGEVDDSVSAIIVAQLLFLEAENPEKPISFY 80

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAGMAIYDT  +I+ P++T CMGQA SMGSLLL+AGE G R  LPNAR+++H
Sbjct: 81  INSPGGSVTAGMAIYDT--YIQSPVATVCMGQACSMGSLLLTAGEPGHRSILPNARVMIH 138

Query: 139 QPS---------GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           QP          GG SGQASDI  HA++I+ I+ RLN+IYV +  ++ + +   ++RDH 
Sbjct: 139 QPRQAIIVYTTFGGASGQASDIAIHAKEILDIRERLNQIYVHHTHQSLDVIVNRMERDHF 198

Query: 190 MSASEACDWGVVDKVLMSRI 209
           MSA +A  +G+VDKVL  R 
Sbjct: 199 MSAEQALTFGLVDKVLEKRP 218


>gi|87302965|ref|ZP_01085769.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           WH 5701]
 gi|87282461|gb|EAQ74420.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           WH 5701]
          Length = 200

 Score =  247 bits (632), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 95/193 (49%), Positives = 137/193 (70%), Gaps = 2/193 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP  +  +   ER  DIY+RL  ERI+F+  ++ D +A  + AQ+L+L++E+  K I LY
Sbjct: 8   VPYRLPGSQY-ERWVDIYTRLGVERILFLGQEVNDGIANSLVAQMLYLDSEDSSKPIYLY 66

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDT+Q++K  + T C+G AASMG+ LL+AG KG R ALP+ARI++H
Sbjct: 67  INSPGGSVTAGLAIYDTIQYVKSDVVTICVGLAASMGAFLLAAGTKGKRLALPHARIMIH 126

Query: 139 QPSGGF-SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP GG    QASDIE  A++I++IK  LN+     CG++ E+V K  DRD+ +SA+EA D
Sbjct: 127 QPLGGTSQRQASDIEIEAREILRIKDMLNQSLADMCGQSLEKVTKDTDRDYFLSAAEAKD 186

Query: 198 WGVVDKVLMSRID 210
           +G++D+V+    +
Sbjct: 187 YGLIDRVISHPSE 199


>gi|254797097|ref|YP_003081935.1| Clp protease [Neorickettsia risticii str. Illinois]
 gi|254590339|gb|ACT69701.1| Clp protease [Neorickettsia risticii str. Illinois]
          Length = 209

 Score =  247 bits (632), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 117/195 (60%), Positives = 162/195 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVV+QT RGER+YDI+SRLLKER+VF+TG IED MA+LI AQLLFLEAENP+K+I
Sbjct: 9   MNLVPMVVDQTPRGERAYDIFSRLLKERVVFLTGPIEDGMASLIVAQLLFLEAENPEKDI 68

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG++IYDTMQ+I+P +ST C+GQAAS  SL+L++G +G RFALP++R+
Sbjct: 69  FMYINSPGGVVTAGLSIYDTMQYIRPSVSTVCVGQAASAASLILASGAEGKRFALPHSRV 128

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+D+E H ++I+++KR +NEIY K+ G+T +++E  L+RD  +S  EA
Sbjct: 129 MVHQPSGGVRGQATDMEIHVKEILQLKRMINEIYRKHTGETIKKIETLLERDTFLSPEEA 188

Query: 196 CDWGVVDKVLMSRID 210
              G++D ++  R +
Sbjct: 189 KKVGLIDDIITQRKE 203


>gi|284036063|ref|YP_003385993.1| endopeptidase Clp [Spirosoma linguale DSM 74]
 gi|283815356|gb|ADB37194.1| Endopeptidase Clp [Spirosoma linguale DSM 74]
          Length = 229

 Score =  247 bits (632), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 92/188 (48%), Positives = 136/188 (72%)

Query: 22  VVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS 81
           V+E+     R  D++SRL+ +RI+F+   ++D++A +I AQLLFLE+ +P+K+I +Y+NS
Sbjct: 42  VIEERPMNFREVDVFSRLMADRIIFMGLPVDDNIANIIVAQLLFLESADPKKDILMYLNS 101

Query: 82  PGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
           PGG V AG+ IYDTMQ+++P ++T C   AASMG++LL+ G  G R ALP+AR+++HQPS
Sbjct: 102 PGGSVYAGLGIYDTMQYVRPDVATVCTSLAASMGAVLLAGGAAGKRSALPHARVMIHQPS 161

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
           GG  GQ+ DIE  A++IVK++  L EI   + GKT EE+EK  DRD  M A EA ++G++
Sbjct: 162 GGAQGQSVDIEITAREIVKLRVELYEILAHHSGKTVEEIEKDSDRDKWMRAEEAKEYGLI 221

Query: 202 DKVLMSRI 209
           D+VL    
Sbjct: 222 DEVLRREK 229


>gi|123966708|ref|YP_001011789.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus str. MIT 9515]
 gi|123201074|gb|ABM72682.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9515]
          Length = 201

 Score =  247 bits (632), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 90/193 (46%), Positives = 136/193 (70%), Gaps = 2/193 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP  +  +   ER  DIY+RL  ERI+F+  ++ D +A  + AQ+L+L++++  K I LY
Sbjct: 8   VPYRLPGSQY-ERWVDIYTRLGVERILFLGQEVNDGIANSLVAQMLYLDSDDNTKPIYLY 66

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDT++++K  + T C+G AASMG+ LL AG KG R ALP++RI++H
Sbjct: 67  INSPGGSVTAGLAIYDTIKYVKSDVVTICVGLAASMGAFLLGAGTKGKRVALPHSRIMIH 126

Query: 139 QPSGGF-SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP GG    QASDIE  A++I++IK  LN+      G+++E++EK  DRD+ +SA EA +
Sbjct: 127 QPLGGTSQRQASDIEIEAREILRIKDMLNKSMADMTGQSFEKIEKDTDRDYFLSAEEAKN 186

Query: 198 WGVVDKVLMSRID 210
           +G++D+V+    +
Sbjct: 187 YGLIDRVISHPSE 199


>gi|113952713|ref|YP_729943.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           CC9311]
 gi|113880064|gb|ABI45022.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP
           [Synechococcus sp. CC9311]
          Length = 200

 Score =  247 bits (632), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 92/193 (47%), Positives = 135/193 (69%), Gaps = 2/193 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP  +  +   ER  DIY+RL  ERI+F+   + D +A  + AQ+L+L++E+  K I LY
Sbjct: 8   VPYRLPGSQM-ERWVDIYTRLGVERILFLGQDVNDGVANSLVAQMLYLDSEDSSKPIYLY 66

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDTMQ++K  + T C+G AASMG+ LL+AG KG R ALP++RI++H
Sbjct: 67  INSPGGSVTAGLAIYDTMQYVKSDVVTICVGLAASMGAFLLTAGTKGKRLALPHSRIMIH 126

Query: 139 QP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP  G    QASDIE  A++I+++K  LN       G+++E++EK  DRD+ +SA+EA D
Sbjct: 127 QPLGGTAQRQASDIEIEAREILRMKEMLNRSMADMTGQSFEKIEKDTDRDYFLSAAEAKD 186

Query: 198 WGVVDKVLMSRID 210
           +G++D+V+    +
Sbjct: 187 YGLIDRVISHPNE 199


>gi|88608072|ref|YP_506627.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neorickettsia
           sennetsu str. Miyayama]
 gi|88600241|gb|ABD45709.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neorickettsia
           sennetsu str. Miyayama]
          Length = 211

 Score =  247 bits (632), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 119/201 (59%), Positives = 163/201 (81%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVV+QT RGER+YDI+SRLLKER+VF+TG IED MA+LI AQLLFLEAENP K+I
Sbjct: 11  MNLVPMVVDQTPRGERAYDIFSRLLKERVVFLTGPIEDGMASLIVAQLLFLEAENPDKDI 70

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG++IYDTMQ+IKP +ST C+GQAAS  SL+L++G +G RFALP++R+
Sbjct: 71  FMYINSPGGVVTAGLSIYDTMQYIKPSVSTVCVGQAASAASLILASGAEGKRFALPHSRV 130

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+D+E H ++I+++KR +NEIY K+ G+T +++E  L+RD  +S  EA
Sbjct: 131 MVHQPSGGVRGQATDMEIHVKEILQLKRMINEIYQKHTGETIKKIETLLERDTFLSPEEA 190

Query: 196 CDWGVVDKVLMSRIDIEEKSK 216
              G++D ++  R +   K +
Sbjct: 191 KKVGIIDDIITQRKENSGKQE 211


>gi|126663138|ref|ZP_01734136.1| ATP-dependent Clp protease proteolytic subunit 2 [Flavobacteria
           bacterium BAL38]
 gi|126624796|gb|EAZ95486.1| ATP-dependent Clp protease proteolytic subunit 2 [Flavobacteria
           bacterium BAL38]
          Length = 228

 Score =  247 bits (632), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 91/204 (44%), Positives = 145/204 (71%)

Query: 4   EGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQL 63
            G      + +   + P ++E+      S D++SRL+ +RI+F+   ++D++A +I AQL
Sbjct: 25  HGVNSLYYDKIVGSMTPYIIEERQLNVASMDVFSRLMMDRIIFMGTGVDDYVANIIQAQL 84

Query: 64  LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           LFLE+ +  K+IS+YINSPGG V AG+ IYDTMQF+KP ++T C G AASMG++LL AG 
Sbjct: 85  LFLESVDASKDISIYINSPGGSVYAGLGIYDTMQFVKPDVATICTGMAASMGAVLLCAGA 144

Query: 124 KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
           +G R ALP++R+++HQPSGG  G A+D+E + ++++K+K  L EI  K+ G+++E+V K 
Sbjct: 145 EGKRSALPHSRVMIHQPSGGAQGVATDMEINLKEMLKLKNELYEIISKHSGQSFEKVHKD 204

Query: 184 LDRDHIMSASEACDWGVVDKVLMS 207
            +RD+ M A+EA ++G++D+VL  
Sbjct: 205 SERDYWMIAAEAKEYGMIDEVLTR 228


>gi|148241694|ref|YP_001226851.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           RCC307]
 gi|147850004|emb|CAK27498.1| Protease subunit of ATP-dependent Clp protease [Synechococcus sp.
           RCC307]
          Length = 200

 Score =  247 bits (631), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 90/193 (46%), Positives = 135/193 (69%), Gaps = 2/193 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP  +  +   ER  DIY+RL  ERI+F+ G++ D +A  + AQ+L+L++++  K I LY
Sbjct: 8   VPYRLPGSQY-ERWVDIYTRLGVERILFLGGEVNDGVANALVAQMLYLDSDDSSKPIYLY 66

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDT+Q+IK  + T C+G AASMG+ LL+AG KG R ALP++RI++H
Sbjct: 67  INSPGGSVTAGLAIYDTIQYIKSDVVTICVGLAASMGAFLLAAGTKGKRVALPHSRIMIH 126

Query: 139 QP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP  G    QASDIE  A++I+++K +LN+      G+T E++ K  DRD+ +SA +A  
Sbjct: 127 QPLGGTAQRQASDIEIEAREILRMKDQLNKQLADMSGQTIEKITKDTDRDYFLSADDAKA 186

Query: 198 WGVVDKVLMSRID 210
           +G++D+V+    +
Sbjct: 187 YGLIDRVISHPSE 199


>gi|323351064|ref|ZP_08086721.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           sanguinis VMC66]
 gi|322122788|gb|EFX94497.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           sanguinis VMC66]
 gi|324993705|gb|EGC25624.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           sanguinis SK405]
 gi|324994982|gb|EGC26895.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           sanguinis SK678]
 gi|325687068|gb|EGD29091.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           sanguinis SK72]
 gi|325696303|gb|EGD38194.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           sanguinis SK160]
 gi|327462975|gb|EGF09296.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           sanguinis SK1]
 gi|327470480|gb|EGF15936.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           sanguinis SK330]
 gi|327474578|gb|EGF19983.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           sanguinis SK408]
 gi|327490136|gb|EGF21924.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           sanguinis SK1058]
 gi|328946905|gb|EGG41042.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           sanguinis SK1087]
          Length = 196

 Score =  247 bits (631), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 95/192 (49%), Positives = 141/192 (73%), Gaps = 2/192 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDNTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  L+
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGVAASMGTIIASSGAKGKRFMLPNAEYLI 120

Query: 138 HQPSGGF--SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP GG     Q +D+   A+ +++ +  L +I  +N GK+ E++ K  +RD+ MSA E 
Sbjct: 121 HQPMGGAGSGTQQTDMAIVAEHLLRTRNTLEKILAENSGKSVEQIHKDAERDYWMSAQET 180

Query: 196 CDWGVVDKVLMS 207
            ++G +D+++ +
Sbjct: 181 LEYGFIDEIMEN 192


>gi|87125532|ref|ZP_01081377.1| ATP-dependent Clp protease proteolytic subunit 3 [Synechococcus sp.
           RS9917]
 gi|86166832|gb|EAQ68094.1| ATP-dependent Clp protease proteolytic subunit 3 [Synechococcus sp.
           RS9917]
          Length = 200

 Score =  247 bits (631), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 93/193 (48%), Positives = 133/193 (68%), Gaps = 2/193 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP  +  +   ER  DIY+RL  ERI+F+  ++ D +A  + AQ+L+L++++  K I LY
Sbjct: 8   VPYRLPGSQM-ERWVDIYTRLGVERILFLGQEVNDGIANSLVAQMLYLDSDDSSKPIYLY 66

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDTMQ++K  + T C+G AASMG+ LL+AG KG R ALP++RI++H
Sbjct: 67  INSPGGSVTAGLAIYDTMQYVKSDVVTICVGLAASMGAFLLAAGTKGKRLALPHSRIMIH 126

Query: 139 QP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP  G    QASDIE  A +I++IK  LN       GK++E +EK  DRD+ +SA EA D
Sbjct: 127 QPLGGTAQRQASDIEIEANEILRIKEMLNRSMAAMTGKSFETIEKDTDRDYFLSAEEAKD 186

Query: 198 WGVVDKVLMSRID 210
           +G++D+V+    +
Sbjct: 187 YGLIDRVISHPNE 199


>gi|324991352|gb|EGC23285.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           sanguinis SK353]
 gi|325690651|gb|EGD32652.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           sanguinis SK115]
 gi|325694980|gb|EGD36884.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           sanguinis SK150]
          Length = 196

 Score =  247 bits (631), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 95/192 (49%), Positives = 141/192 (73%), Gaps = 2/192 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDNTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  L+
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGVAASMGTIIASSGAKGKRFMLPNAEYLI 120

Query: 138 HQPSGGF--SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP GG     Q +D+   A+ +++ +  L +I  +N GK+ E++ K  +RD+ MSA E 
Sbjct: 121 HQPMGGAGSGTQQTDMAIVAEHLLRTRNTLEKILAENSGKSVEQIHKDAERDYWMSAQET 180

Query: 196 CDWGVVDKVLMS 207
            ++G +D+++ +
Sbjct: 181 LEYGFIDEIMEN 192


>gi|255548433|ref|XP_002515273.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis]
 gi|223545753|gb|EEF47257.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis]
          Length = 305

 Score =  247 bits (631), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 91/191 (47%), Positives = 131/191 (68%), Gaps = 6/191 (3%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G  PMV E      R   + S+L + RI+   G ++D MA +I AQLL+L+A +P K+I 
Sbjct: 106 GPPPMVHE------RFQSVISQLFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPNKDIV 159

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+NSPGG VTAGMAI+DTM+ I+P +ST C+G AASMG+ LLSAG KG R++LPN+RI+
Sbjct: 160 MYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIM 219

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  G  SDI+  A +++  K  LN     + G++ E++ +  DRD+ MSA EA 
Sbjct: 220 IHQPLGGAQGGQSDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSAKEAT 279

Query: 197 DWGVVDKVLMS 207
           D+G++D V+ +
Sbjct: 280 DYGLIDGVITN 290


>gi|313158115|gb|EFR57520.1| endopeptidase Clp [Alistipes sp. HGB5]
          Length = 222

 Score =  247 bits (631), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 93/189 (49%), Positives = 136/189 (71%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+      + D++SRL+ +RI+F+   I D  A +I AQLLFLE+ +P+K+I +YI
Sbjct: 32  PTIIEERQLNIATMDVFSRLMMDRIIFLGAPIYDDAANIIQAQLLFLESVDPEKDIQIYI 91

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V+AG+ IYDTMQ +   ++T C G AASMG++LL+AG KG R ALP++R+++HQ
Sbjct: 92  NSPGGSVSAGLGIYDTMQLVNSDVATICTGLAASMGAVLLTAGAKGKRSALPHSRVMIHQ 151

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I+K KR L EI   + G   +++EK  DRD+ +SA EA ++G
Sbjct: 152 PLGGAQGQASDIEITAREIMKTKRELYEILSAHSGVALKKIEKDADRDYWLSAREAKEYG 211

Query: 200 VVDKVLMSR 208
           ++D+VL  R
Sbjct: 212 LIDEVLSKR 220


>gi|88801527|ref|ZP_01117055.1| ATP-dependent Clp protease proteolytic subunit 2 [Polaribacter
           irgensii 23-P]
 gi|88782185|gb|EAR13362.1| ATP-dependent Clp protease proteolytic subunit 2 [Polaribacter
           irgensii 23-P]
          Length = 220

 Score =  247 bits (630), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 98/206 (47%), Positives = 140/206 (67%)

Query: 4   EGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQL 63
            G +  +   +   L P ++E+        D++SRL+ +RI+F+   I D +A +I AQL
Sbjct: 15  HGISSTNYTKITSSLTPYIMEERQMNITQMDVFSRLMMDRIIFLGTGINDQVANIIQAQL 74

Query: 64  LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           LFLE+ +  K+IS+YINSPGG V AG+ IYDTMQFIKP ++T C G AASMG++L+ AGE
Sbjct: 75  LFLESVDANKDISIYINSPGGGVYAGLGIYDTMQFIKPDVATICTGMAASMGAVLMCAGE 134

Query: 124 KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
           KG R ALP++RI++HQP GG  GQASDIE  A++I+K+K  L  I   + G++ E+V K 
Sbjct: 135 KGKRSALPHSRIMIHQPLGGAQGQASDIEITAREIMKLKDELYAIIASHSGQSIEKVHKD 194

Query: 184 LDRDHIMSASEACDWGVVDKVLMSRI 209
            DRD+ M A EA  +G++D+VL  + 
Sbjct: 195 SDRDYWMKADEAKVYGMIDEVLERKK 220


>gi|34762747|ref|ZP_00143736.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|256846930|ref|ZP_05552384.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium
           sp. 3_1_36A2]
 gi|294784271|ref|ZP_06749566.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium
           sp. 3_1_27]
 gi|27887597|gb|EAA24677.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|256717728|gb|EEU31287.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium
           sp. 3_1_36A2]
 gi|294488137|gb|EFG35488.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium
           sp. 3_1_27]
          Length = 193

 Score =  247 bits (630), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 106/190 (55%), Positives = 144/190 (75%), Gaps = 2/190 (1%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P V++   + ER+YDIYSRLLK+RI+FV   I++ +A  I AQLL+LEAE+P+K+I +YI
Sbjct: 4   PTVIDNNGKSERAYDIYSRLLKDRIIFVGTAIDETVANSIIAQLLYLEAEDPEKDIIMYI 63

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VT GMAIYDTM +IKP + T C+GQAASMG+ LL+AG KG RFAL N+RI++HQ
Sbjct: 64  NSPGGSVTDGMAIYDTMNYIKPDVQTVCVGQAASMGAFLLAAGAKGKRFALENSRIMIHQ 123

Query: 140 P--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           P  SGG  GQA+DI  HA +++KIK RL E+  KN GKT E++ +  +RD+ +S+ EA +
Sbjct: 124 PLISGGLKGQATDISIHANELLKIKDRLAELLAKNTGKTKEQILRDTERDNYLSSEEAVN 183

Query: 198 WGVVDKVLMS 207
           +G++D V   
Sbjct: 184 YGLIDSVFKR 193


>gi|19705312|ref|NP_602807.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
 gi|237742958|ref|ZP_04573439.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           4_1_13]
 gi|254302272|ref|ZP_04969630.1| S14 family endopeptidase ClpP [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|256028615|ref|ZP_05442449.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           D11]
 gi|289766533|ref|ZP_06525911.1| endopeptidase Clp [Fusobacterium sp. D11]
 gi|296328560|ref|ZP_06871079.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|22653693|sp|Q8RHJ8|CLPP_FUSNN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|19713281|gb|AAL94106.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
 gi|148322464|gb|EDK87714.1| S14 family endopeptidase ClpP [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|229430606|gb|EEO40818.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           4_1_13]
 gi|289718088|gb|EFD82100.1| endopeptidase Clp [Fusobacterium sp. D11]
 gi|296154369|gb|EFG95168.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 193

 Score =  247 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 106/190 (55%), Positives = 144/190 (75%), Gaps = 2/190 (1%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P V++   + ER+YDIYSRLLK+RI+FV   I++ +A  I AQLL+LEAE+P+K+I +YI
Sbjct: 4   PTVIDNNGKSERAYDIYSRLLKDRIIFVGTAIDETVANSIIAQLLYLEAEDPEKDIIMYI 63

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VT GMAIYDTM +IKP + T C+GQAASMG+ LL+AG KG RFAL N+RI++HQ
Sbjct: 64  NSPGGSVTDGMAIYDTMNYIKPDVQTVCVGQAASMGAFLLAAGAKGKRFALENSRIMIHQ 123

Query: 140 P--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           P  SGG  GQA+DI  HA +++KIK RL E+  KN GKT E++ +  +RD+ +S+ EA +
Sbjct: 124 PLISGGLKGQATDISIHANELLKIKDRLAELLAKNTGKTKEQILRDTERDNYLSSEEAVN 183

Query: 198 WGVVDKVLMS 207
           +G++D V   
Sbjct: 184 YGLIDSVFRR 193


>gi|159465361|ref|XP_001690891.1| active subunit of the chloroplast ClpP complex [Chlamydomonas
           reinhardtii]
 gi|158279577|gb|EDP05337.1| active subunit of the chloroplast ClpP complex [Chlamydomonas
           reinhardtii]
          Length = 256

 Score =  247 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 84/208 (40%), Positives = 136/208 (65%), Gaps = 11/208 (5%)

Query: 5   GCAKKDSEDVFL-----GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLI 59
             + ++     +        P+V+E      R   + S+L ++RIV + G ++D MA L+
Sbjct: 42  AVSSRNPHPPVVCQGPPPPNPLVIE------RFQGVVSQLFQQRIVRLGGAVDDDMANLL 95

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
            AQLL+L++ + +++I++Y+NSPGG VTAGMA++DTM+ I+P +ST C+G AASMG+ +L
Sbjct: 96  VAQLLYLDSVDNKRDITMYVNSPGGSVTAGMAVFDTMRHIRPDVSTCCIGLAASMGAFIL 155

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
           ++G+ G R++LPN+RI++HQP GG  GQA+DIE  A +I+  K  LN    +  G++ E 
Sbjct: 156 ASGQAGKRYSLPNSRIMIHQPLGGAQGQATDIEIQANEILHHKLTLNGYLAQFTGQSMET 215

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVLMS 207
           + K  DRD  MS  EA ++G+VD ++  
Sbjct: 216 ITKDTDRDFFMSPQEAIEYGLVDAIISK 243


>gi|166368459|ref|YP_001660732.1| ATP-dependent Clp protease proteolytic subunit [Microcystis
           aeruginosa NIES-843]
 gi|159028168|emb|CAO89775.1| clpP [Microcystis aeruginosa PCC 7806]
 gi|166090832|dbj|BAG05540.1| ATP-dependent Clp protease proteolytic subunit [Microcystis
           aeruginosa NIES-843]
          Length = 199

 Score =  247 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 97/194 (50%), Positives = 136/194 (70%), Gaps = 3/194 (1%)

Query: 19  VPMVVEQTNRG--ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +      E+   IYSRL  ERI+F+  ++ D +A  + AQ+L+L++E+P K I 
Sbjct: 5   VPKVPYRLPGSQYEQWISIYSRLSVERILFLGQEVTDGLANALVAQMLYLDSEDPTKPIY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGMAIYDTMQ+IK  + T C+G AASMG+ LL++G  G R ALP+ARI+
Sbjct: 65  LYINSPGGSVTAGMAIYDTMQYIKAEVVTICVGLAASMGAFLLASGSPGKRLALPHARIM 124

Query: 137 LHQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP GG    QA+DI+  A++I++I+++LNEI     G+T E +EK  DRD+ +SA EA
Sbjct: 125 IHQPMGGTGRRQATDIDIEAKEILRIRQQLNEIMANRTGQTIERIEKDTDRDYFLSAEEA 184

Query: 196 CDWGVVDKVLMSRI 209
             +G++DKV+  R 
Sbjct: 185 VAYGLIDKVVEGRP 198


>gi|260436469|ref|ZP_05790439.1| Clp protease [Synechococcus sp. WH 8109]
 gi|260414343|gb|EEX07639.1| Clp protease [Synechococcus sp. WH 8109]
          Length = 200

 Score =  247 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 91/193 (47%), Positives = 136/193 (70%), Gaps = 2/193 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP  +  +   ER  DIY+RL  ERI+F+  ++ D +A  + AQ+L+L++E+  K I LY
Sbjct: 8   VPYRLPGSQM-ERWVDIYTRLGVERILFLGSEVNDGIANSLVAQMLYLDSEDSSKPIYLY 66

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDT+Q++K  + T C+G AASMG+ LL+AG KG R ALP++RI++H
Sbjct: 67  INSPGGSVTAGLAIYDTIQYVKSEVVTICVGLAASMGAFLLAAGTKGKRVALPHSRIMIH 126

Query: 139 QPSGGF-SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP GG    QASDIE  A++I+++K  LN       G+++E++EK  DRD+ +SA EA +
Sbjct: 127 QPLGGTSRRQASDIEIEAREILRMKEMLNRSLADMSGQSFEKIEKDTDRDYFLSAEEAKE 186

Query: 198 WGVVDKVLMSRID 210
           +G++D+V+    +
Sbjct: 187 YGLIDRVISHPNE 199


>gi|125718530|ref|YP_001035663.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           sanguinis SK36]
 gi|166214716|sp|A3CPK8|CLPP_STRSV RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|125498447|gb|ABN45113.1| ATP-dependent Clp protease, proteolytic subunit, putative
           [Streptococcus sanguinis SK36]
          Length = 196

 Score =  247 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 96/192 (50%), Positives = 141/192 (73%), Gaps = 2/192 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  I AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  L+
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGVAASMGTIIASSGAKGKRFMLPNAEYLI 120

Query: 138 HQPSGGF--SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP GG     Q +D+   A+ +++ +  L +I  +N GK+ E++ K  +RD+ MSA E 
Sbjct: 121 HQPMGGAGSGTQQTDMAIVAEHLLRTRNTLEKILAENSGKSVEQIHKDAERDYWMSAQET 180

Query: 196 CDWGVVDKVLMS 207
            ++G +D+++ +
Sbjct: 181 LEYGFIDEIMEN 192


>gi|78779795|ref|YP_397907.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus str. MIT 9312]
 gi|123969045|ref|YP_001009903.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus str. AS9601]
 gi|126696838|ref|YP_001091724.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus str. MIT 9301]
 gi|157413876|ref|YP_001484742.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus str. MIT 9215]
 gi|254526963|ref|ZP_05139015.1| Clp protease [Prochlorococcus marinus str. MIT 9202]
 gi|115311346|sp|Q319H4|CLPP2_PROM9 RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|78713294|gb|ABB50471.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Prochlorococcus marinus str. MIT 9312]
 gi|123199155|gb|ABM70796.1| Clp protease proteolytic subunit [Prochlorococcus marinus str.
           AS9601]
 gi|126543881|gb|ABO18123.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9301]
 gi|157388451|gb|ABV51156.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9215]
 gi|221538387|gb|EEE40840.1| Clp protease [Prochlorococcus marinus str. MIT 9202]
          Length = 203

 Score =  246 bits (629), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 90/193 (46%), Positives = 136/193 (70%), Gaps = 2/193 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP  +  +   ER  DIY+RL  ERI+F+  ++ D +A  + AQ+L+L++++  K I LY
Sbjct: 8   VPYRLPGSQY-ERWVDIYTRLGVERILFLGQEVNDGIANSLVAQMLYLDSDDNSKPIYLY 66

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDT++++K  + T C+G AASMG+ LL+AG KG R ALP++RI++H
Sbjct: 67  INSPGGSVTAGLAIYDTIKYVKSDVVTICVGLAASMGAFLLAAGTKGKRVALPHSRIMIH 126

Query: 139 QPSGGF-SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP GG    QASDIE  A++I++IK  LN       G+++E++EK  DRD+ +SA EA +
Sbjct: 127 QPLGGTSQRQASDIEIEAKEILRIKDMLNMSMADMTGQSFEKIEKDTDRDYFLSAEEAKN 186

Query: 198 WGVVDKVLMSRID 210
           +G++D+V+    +
Sbjct: 187 YGLIDRVITHPSE 199


>gi|255645951|gb|ACU23464.1| unknown [Glycine max]
          Length = 304

 Score =  246 bits (629), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 89/191 (46%), Positives = 131/191 (68%), Gaps = 6/191 (3%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G  PMV E      R   + S+L + RI+   G ++D MA +I AQLL+L+A +P K+I 
Sbjct: 100 GPPPMVAE------RFQSVISQLFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPNKDIV 153

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+NSPGG VTAGMAI+DTM+ I+P +ST C+G AASMG+ LLSAG KG R++LPN+RI+
Sbjct: 154 MYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIM 213

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  G  +DI+  A +++  K  LN     + G++ +++ +  DRD  MSA EA 
Sbjct: 214 IHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLDKINQDTDRDFFMSAKEAK 273

Query: 197 DWGVVDKVLMS 207
           ++G++D V+M+
Sbjct: 274 EYGLIDGVIMN 284


>gi|223994545|ref|XP_002286956.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220978271|gb|EED96597.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 260

 Score =  246 bits (629), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 90/191 (47%), Positives = 130/191 (68%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
            P  +     G    D+ SRLLK+RI+ +   + D +A ++ AQLL+L  E+P+K+I+LY
Sbjct: 57  PPPTLPTVEGGSGQLDVISRLLKDRILLLGTDVNDEVANVLVAQLLYLANEDPEKDITLY 116

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG V+AG+AIYDTMQFI   + T C G AASMG+ LL AG  G R +LPNARI++H
Sbjct: 117 INSPGGSVSAGLAIYDTMQFIPCDVQTVCFGMAASMGAFLLGAGAPGKRKSLPNARIMIH 176

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  GQA+DIE  A++I+ +K  LN+   + C +  E++E+  DRD  M+  EA D+
Sbjct: 177 QPLGGAQGQAADIEIQAKEILFVKACLNKYIAEYCDQPVEKIEEDTDRDFFMTPYEAQDY 236

Query: 199 GVVDKVLMSRI 209
           G++D+V+ ++ 
Sbjct: 237 GIIDEVIKTKT 247


>gi|237743260|ref|ZP_04573741.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           7_1]
 gi|260495117|ref|ZP_05815246.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium
           sp. 3_1_33]
 gi|229433039|gb|EEO43251.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           7_1]
 gi|260197560|gb|EEW95078.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium
           sp. 3_1_33]
          Length = 193

 Score =  246 bits (629), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 105/190 (55%), Positives = 144/190 (75%), Gaps = 2/190 (1%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P V++   + ER+YDIYSRLLK+RI+FV   I++ +A  I AQLL+LEAE+P+K+I +YI
Sbjct: 4   PTVIDNNGKSERAYDIYSRLLKDRIIFVGTAIDETVANSIIAQLLYLEAEDPEKDIIMYI 63

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VT GMAIYDTM +IKP + T C+GQAASMG+ LL+AG KG RFAL N+RI++HQ
Sbjct: 64  NSPGGSVTDGMAIYDTMNYIKPDVQTVCVGQAASMGAFLLAAGAKGKRFALENSRIMIHQ 123

Query: 140 P--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           P  SGG  GQA+DI  HA +++KIK +L E+  KN GKT E++ +  +RD+ +S+ EA +
Sbjct: 124 PLISGGLKGQATDISIHANELLKIKDKLAELLAKNTGKTKEQILRDTERDNYLSSEEAVN 183

Query: 198 WGVVDKVLMS 207
           +G++D V   
Sbjct: 184 YGLIDSVFRR 193


>gi|156037438|ref|XP_001586446.1| hypothetical protein SS1G_12432 [Sclerotinia sclerotiorum 1980]
 gi|154697841|gb|EDN97579.1| hypothetical protein SS1G_12432 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 198

 Score =  246 bits (629), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 100/196 (51%), Positives = 148/196 (75%), Gaps = 2/196 (1%)

Query: 22  VVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS 81
           ++     G R+ DI+S+LL+ERI+ + G+++  ++  + AQLL+LE++ P+K I+LYINS
Sbjct: 1   MLATRGGGWRTSDIFSKLLQERIICLNGEVDSSLSAAVVAQLLYLESDAPEKAITLYINS 60

Query: 82  PGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
           PGG VTAG+AIYDTM +IK P+ST C+GQAASMGSLLL  GE G RF LP++ I++HQPS
Sbjct: 61  PGGSVTAGLAIYDTMTYIKSPVSTVCVGQAASMGSLLLCGGEPGKRFCLPHSSIMIHQPS 120

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK--TYEEVEKTLDRDHIMSASEACDWG 199
           GG+SGQA+DI  HA +I+++++ LNEIY ++  K  + EE+E+ ++RD  +SA EA D G
Sbjct: 121 GGYSGQATDIAIHATEILRVRKSLNEIYKRHLTKEHSLEEIERMMERDKFLSAQEALDMG 180

Query: 200 VVDKVLMSRIDIEEKS 215
           +VD++L  R  + +K 
Sbjct: 181 IVDEILDRRESVGKKE 196


>gi|255071043|ref|XP_002507603.1| predicted protein [Micromonas sp. RCC299]
 gi|226522878|gb|ACO68861.1| predicted protein [Micromonas sp. RCC299]
          Length = 272

 Score =  246 bits (629), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 92/199 (46%), Positives = 137/199 (68%), Gaps = 6/199 (3%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G  P+V+E      R   + S+L+ +RI+ + G ++D    LI AQLL+L+A +P+K+I+
Sbjct: 70  GPSPIVME------RFQGVASQLMNQRIIRLGGAVDDDSCNLIVAQLLWLDATDPKKDIT 123

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LY+NSPGG VTAGMA++DTM+ ++P IST C+G AASMG+ LL++G++G RF+LPN+RI+
Sbjct: 124 LYVNSPGGSVTAGMAVFDTMRHVRPDISTVCVGLAASMGAFLLASGQQGKRFSLPNSRIM 183

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA+DIE  A +I+  K  LN    +  GK  + V +  DRD  MSA EA 
Sbjct: 184 IHQPLGGAQGQAADIEIQANEIMHHKSTLNGYLAEFTGKPLDTVMQDTDRDFFMSAFEAK 243

Query: 197 DWGVVDKVLMSRIDIEEKS 215
           ++G++D V+    D+  +S
Sbjct: 244 EYGLIDSVIEHPTDVAVRS 262


>gi|167757344|ref|ZP_02429471.1| hypothetical protein CLORAM_02894 [Clostridium ramosum DSM 1402]
 gi|237735579|ref|ZP_04566060.1| ATP-dependent Clp protease proteolytic subunit [Mollicutes
           bacterium D7]
 gi|167703519|gb|EDS18098.1| hypothetical protein CLORAM_02894 [Clostridium ramosum DSM 1402]
 gi|229381324|gb|EEO31415.1| ATP-dependent Clp protease proteolytic subunit [Coprobacillus sp.
           D7]
          Length = 190

 Score =  246 bits (629), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 98/190 (51%), Positives = 137/190 (72%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+E+TN+ E +YDIYSRLL++RI+ +TG I+D M++ I  QLL+LE+ +   +I
Sbjct: 1   MHLVPTVIEKTNQREYAYDIYSRLLEDRIILLTGTIDDKMSSSIVGQLLYLESLDNNADI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG + AGMAIYDTM FIK  +ST  +G AASM + LLSAG KG R +LPN+ I
Sbjct: 61  FMYINSPGGSINAGMAIYDTMNFIKCDVSTIVIGMAASMAAFLLSAGAKGKRCSLPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP G F GQASDIE  A+ I+K K +LN I  KN  +  +++    DRDH +   EA
Sbjct: 121 MIHQPLGAFEGQASDIEISAKRILKQKEKLNLILSKNTNQPIDKIVIDTDRDHFLEPDEA 180

Query: 196 CDWGVVDKVL 205
            ++G++D+V+
Sbjct: 181 LEYGLIDEVI 190


>gi|34540241|ref|NP_904720.1| ATP-dependent Clp protease proteolytic subunit [Porphyromonas
           gingivalis W83]
 gi|60389708|sp|Q7MX09|CLPP_PORGI RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|34396553|gb|AAQ65619.1| ATP-dependent Clp protease, proteolytic subunit [Porphyromonas
           gingivalis W83]
          Length = 222

 Score =  246 bits (629), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 92/188 (48%), Positives = 136/188 (72%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  QI+D+ A +I AQLL+L++ +P K+IS+Y+
Sbjct: 32  PTIIEERQLNVAQMDVFSRLMMDRIIFLGTQIDDYTANVIQAQLLYLDSADPGKDISIYL 91

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V AG  IYDTMQ+I   ++T C G AASM S+LL AG KG RFALP++R+++HQ
Sbjct: 92  NSPGGSVYAGYGIYDTMQYIGCDVATICTGMAASMASVLLVAGTKGKRFALPHSRVMIHQ 151

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASD+E  A++I+++K+ L  I   + GK  E+VEK  DRD+ M+A EA ++G
Sbjct: 152 PLGGMQGQASDLEIAAREILRVKKELYTIISSHSGKPVEQVEKDSDRDYWMTAPEALEYG 211

Query: 200 VVDKVLMS 207
           ++DK+L  
Sbjct: 212 MIDKILEK 219


>gi|307128583|ref|YP_003880613.1| ATP-dependent Clp protease, proteolytic subunit [Candidatus Sulcia
           muelleri CARI]
 gi|306483045|gb|ADM89915.1| ATP-dependent Clp protease, proteolytic subunit [Candidatus Sulcia
           muelleri CARI]
          Length = 217

 Score =  246 bits (629), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 84/205 (40%), Positives = 140/205 (68%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           +S++   +    +    + P ++E+        D++SRL+ +RI+F+   I+D +A ++ 
Sbjct: 12  ISYKKINRSYLNNYIQSMTPYIMEERKSNVFQMDVFSRLMMDRIIFLGTPIDDKIANIVQ 71

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFL++ +  K+I +YINSPGG V +G+ IYDTMQ +KP IST C G AASM ++LL 
Sbjct: 72  AQLLFLQSLDSNKDIQIYINSPGGSVYSGLGIYDTMQILKPEISTICTGIAASMAAILLC 131

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           +G+KG R  L ++R+L+HQP G   GQ+SD+E   ++I+K+K+ LN I  ++  + +E+V
Sbjct: 132 SGKKGKRSILKHSRVLIHQPIGYAKGQSSDMEITVREILKLKKELNNIISEHTNQPFEKV 191

Query: 181 EKTLDRDHIMSASEACDWGVVDKVL 205
           +K  DRD+ M++ EA ++G+VD++L
Sbjct: 192 QKDSDRDYWMTSEEAKNYGIVDEIL 216


>gi|76262827|gb|ABA41488.1| ATP-dependent Clp protease proteolytic subunit [Carica papaya]
          Length = 306

 Score =  246 bits (629), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 89/191 (46%), Positives = 130/191 (68%), Gaps = 6/191 (3%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G  PMV E      R   + S+L + RI+   G ++D MA +I AQLL+L+A +P K+I 
Sbjct: 102 GPPPMVQE------RFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAVDPNKDIV 155

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+NSPGG VTAGMA++DTM+ I+P +ST C+G AASMG+ LLSAG KG R++LPN+RI+
Sbjct: 156 MYVNSPGGSVTAGMAVFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIM 215

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  G  +DI+  A +++  K  LN     + G++ E + +  DRD  MSA EA 
Sbjct: 216 IHQPLGGAQGGQTDIDIQANEMLHHKANLNSYLAYHTGQSLERINQDTDRDFFMSAKEAK 275

Query: 197 DWGVVDKVLMS 207
           ++G++D V+M+
Sbjct: 276 EYGLIDGVIMN 286


>gi|219847585|ref|YP_002462018.1| Endopeptidase Clp [Chloroflexus aggregans DSM 9485]
 gi|219541844|gb|ACL23582.1| Endopeptidase Clp [Chloroflexus aggregans DSM 9485]
          Length = 195

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 92/191 (48%), Positives = 138/191 (72%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            VP +VE+T+RGERS+DI+SRLLKER++ +   I+D +A+ + AQLL L+ ++P+++I +
Sbjct: 5   PVPTIVERTSRGERSWDIFSRLLKERVIIIGEPIDDELASSVVAQLLVLQQQDPERDIWM 64

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+ AG+AIYDTMQ + P + T C+G+AASM ++LL AG KG RFALP+A I  
Sbjct: 65  YINSPGGVIRAGLAIYDTMQLVTPDVCTVCVGRAASMATVLLCAGAKGKRFALPHATIHS 124

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           H   GG  G A D++    ++++++R L EI  K+ G+T E +E    RD  M+AS+A +
Sbjct: 125 HPAGGGVEGYAPDVQIAVDEMLRLQRLLREIMAKHSGQTVERLEADFSRDFYMTASQAVE 184

Query: 198 WGVVDKVLMSR 208
           +G++D +L  R
Sbjct: 185 YGLIDAILTPR 195


>gi|284929271|ref|YP_003421793.1| ATP-dependent Clp protease proteolytic subunit ClpP [cyanobacterium
           UCYN-A]
 gi|284809715|gb|ADB95412.1| ATP-dependent Clp protease proteolytic subunit ClpP [cyanobacterium
           UCYN-A]
          Length = 198

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 97/198 (48%), Positives = 138/198 (69%), Gaps = 2/198 (1%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
            + +  VP  +  +   ER  DIY+RL +ERI+F++ ++ D +A  I A LL+L++E+  
Sbjct: 2   PIGIPSVPYRLPGSQY-ERWIDIYTRLGQERIIFLSQEVTDGIANRIVALLLYLDSEDSS 60

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K I LYINSPGG VTAGMAI+DTMQ+I+  + T C+G AASMGS LL+AG  G R ALP+
Sbjct: 61  KPIYLYINSPGGSVTAGMAIFDTMQYIRSEVITICVGLAASMGSFLLAAGTPGKRLALPH 120

Query: 133 ARILLHQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           ARI++HQP GG    QASDIE  A +I++I+ +LN I    CG+  E++EK  DRD+ +S
Sbjct: 121 ARIMIHQPMGGTGRRQASDIEIEANEILRIRAQLNNILATKCGQPLEKIEKDTDRDYFLS 180

Query: 192 ASEACDWGVVDKVLMSRI 209
           A EA ++G++D+V+  R 
Sbjct: 181 AEEAKNYGLIDQVIEERT 198


>gi|269926534|ref|YP_003323157.1| Endopeptidase Clp [Thermobaculum terrenum ATCC BAA-798]
 gi|269790194|gb|ACZ42335.1| Endopeptidase Clp [Thermobaculum terrenum ATCC BAA-798]
          Length = 210

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 100/196 (51%), Positives = 146/196 (74%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            L+PMV+E TNRGER++DIYSRLLK+RI+ +   I+D +A LI AQLLFL+AE+P+++I 
Sbjct: 7   SLIPMVIETTNRGERAFDIYSRLLKDRIIILGTPIDDQIANLIIAQLLFLDAEDPERDIQ 66

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            YINSPGG +TAG+AIYDTMQF++P I T CMG AASM + LL+AG KG R+ALPNA I 
Sbjct: 67  FYINSPGGSITAGLAIYDTMQFVRPDIVTICMGLAASMATPLLAAGTKGKRYALPNATIH 126

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +H  SGG  G A+D+E+ A+ +++++RR+ E+   + G+  E +E   DR+  M+  EA 
Sbjct: 127 MHPASGGAQGAAADVEQQARFLIRMQRRVRELLAMHTGQPLERIEVDFDREKFMTPEEAK 186

Query: 197 DWGVVDKVLMSRIDIE 212
           ++G++D+++ S   + 
Sbjct: 187 EYGIIDEIMASTKQLP 202


>gi|56961817|ref|YP_173539.1| ATP-dependent Clp protease proteolytic subunit [Bacillus clausii
           KSM-K16]
 gi|67460457|sp|Q5WLZ7|CLPP1_BACSK RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|56908051|dbj|BAD62578.1| ATP-dependent Clp protease proteolytic subunit [Bacillus clausii
           KSM-K16]
          Length = 193

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 98/188 (52%), Positives = 137/188 (72%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            +P V+EQT  GERSYDIYSRLLK+RI+F+  +I D +A  + AQLLFL + +P+K+IS+
Sbjct: 4   PIPYVMEQTRYGERSYDIYSRLLKDRIIFIGDEITDTLANSVTAQLLFLASTDPEKDISI 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG AI DTM +IKP I T C G AAS  ++LL  G KG R ALP+A +++
Sbjct: 64  YINSPGGSVSAGFAILDTMLYIKPDIQTICTGMAASFAAVLLVGGTKGKRCALPHAEVMI 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASD++ +AQ I+K ++ +N    +  G+T +++    +RD+ MSA+EA D
Sbjct: 124 HQPHGGMKGQASDMDIYAQRILKQRKEINHFIAERTGQTPDKIATDSERDYFMSAAEAKD 183

Query: 198 WGVVDKVL 205
           +GV+D +L
Sbjct: 184 YGVIDNIL 191


>gi|160331468|ref|XP_001712441.1| clpP2 [Hemiselmis andersenii]
 gi|159765889|gb|ABW98116.1| clpP2 [Hemiselmis andersenii]
          Length = 233

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 93/209 (44%), Positives = 141/209 (67%), Gaps = 4/209 (1%)

Query: 2   SFEGCAKKDSEDVFLGL--VPMVVEQTNRGE--RSYDIYSRLLKERIVFVTGQIEDHMAT 57
           ++     +  +DVF+    VP V  +          DIY+RL +ERI+F+  +I+D +A 
Sbjct: 21  NYSVSKNQSQKDVFMMPIGVPKVAYRVPGAPSADWVDIYNRLYRERIIFLGQEIDDEIAN 80

Query: 58  LICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSL 117
            I A +L+L++E+  K I LYINSPGG V +G+A+YDT++ IK  + T  +G AASM S 
Sbjct: 81  QIIAVMLYLDSEDNSKPIYLYINSPGGSVISGLAMYDTIRHIKSEVVTINVGLAASMASF 140

Query: 118 LLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTY 177
           +L+AGEKG R ALP++RI++HQP GG  GQASDI+  AQ I++I++ L E Y +  G+ Y
Sbjct: 141 ILAAGEKGKRLALPHSRIMIHQPMGGAQGQASDIKVEAQQILRIRKSLTEDYAQMTGRPY 200

Query: 178 EEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           E+V + +DRD+ MSA EA ++G++D+V+ 
Sbjct: 201 EKVLQDMDRDNFMSAYEAVEYGLIDRVIE 229


>gi|33862587|ref|NP_894147.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus str. MIT 9313]
 gi|67460518|sp|Q7V8M4|CLPP2_PROMM RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|33634503|emb|CAE20489.1| Clp protease subunit [Prochlorococcus marinus str. MIT 9313]
          Length = 200

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 93/193 (48%), Positives = 138/193 (71%), Gaps = 2/193 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP  +  +   ER  DIY+RL  ERI+F+  ++ D +A  + AQ+L+L++E+  K I LY
Sbjct: 8   VPYRLPGSQM-ERWVDIYTRLGVERILFLGQEVSDGVANSLVAQMLYLDSEDSTKPIYLY 66

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDTM+++K  + T C+G AASMG+ LL+AG KG R ALP++RI++H
Sbjct: 67  INSPGGSVTAGLAIYDTMKYVKSDVVTICVGLAASMGAFLLTAGTKGKRLALPHSRIMIH 126

Query: 139 QPSGGF-SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP GG    QASDIE  A++I++IK  LN    +  G+++E++EK  DRD+ +SA+EA D
Sbjct: 127 QPLGGTNQRQASDIEIEAREILRIKDMLNHSMAELTGQSFEKIEKDTDRDYFLSAAEAKD 186

Query: 198 WGVVDKVLMSRID 210
           +G++D+V+    +
Sbjct: 187 YGLIDRVIAHPNE 199


>gi|324529259|gb|ADY48999.1| ATP-dependent Clp protease proteolytic subunit 1 [Ascaris suum]
          Length = 218

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 102/186 (54%), Positives = 143/186 (76%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P+V++   R ER YDIYSRLLK+RI+ V   I D +A+ I AQLL+L+ E+ +  I++Y
Sbjct: 26  IPLVIDNDGRIERVYDIYSRLLKDRIICVMTPINDQVASAIIAQLLYLQGESSKSTINMY 85

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+ IYDTMQ+I  P++T+C+GQA+SMGSLLL AGEKGMR +LPN+RI++H
Sbjct: 86  INSPGGSVTAGLGIYDTMQYISAPVATWCIGQASSMGSLLLCAGEKGMRSSLPNSRIMVH 145

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  G ASD+   A++I ++++RLNE+Y K+ G+  + +E  LDRD  MSA EA  +
Sbjct: 146 QPSGGAEGTASDVIIRAEEIARLRKRLNELYAKHTGQDVKIIEAALDRDKYMSAEEAKAF 205

Query: 199 GVVDKV 204
           G++D +
Sbjct: 206 GLIDHI 211


>gi|298252276|ref|ZP_06976079.1| Endopeptidase Clp [Ktedonobacter racemifer DSM 44963]
 gi|297546868|gb|EFH80736.1| Endopeptidase Clp [Ktedonobacter racemifer DSM 44963]
          Length = 211

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 102/191 (53%), Positives = 147/191 (76%), Gaps = 2/191 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+E T RGER+YD++SRLL++RI+ V G I+D M+ L+ AQLL+L AE+ ++EI++
Sbjct: 5   LVPTVLENTPRGERAYDLFSRLLRDRIIVVNGPIDDTMSGLVVAQLLYLAAEDSKREINM 64

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG + AG+ IYDTM+ +  PIST C+G AAS G++LL AGEKG RF++P+ARI L
Sbjct: 65  YINSPGGSINAGLGIYDTMRVLPCPISTTCVGYAASFGTILLLAGEKGRRFSMPHARIHL 124

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SG  SGQASDI+ HA++I+ ++  +N+I  ++ G+T E ++K  +RD  MSA EA
Sbjct: 125 HQPLISGSLSGQASDIDIHAREILHLRSEINDIIQEHSGQTLERIQKDTNRDFYMSAVEA 184

Query: 196 CDWGVVDKVLM 206
            ++G++D +L 
Sbjct: 185 KEYGIIDDILT 195


>gi|78212384|ref|YP_381163.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           CC9605]
 gi|124013824|sp|Q3ALC4|CLPP3_SYNSC RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
           AltName: Full=Endopeptidase Clp 3
 gi|78196843|gb|ABB34608.1| Endopeptidase Clp [Synechococcus sp. CC9605]
          Length = 200

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 91/193 (47%), Positives = 136/193 (70%), Gaps = 2/193 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP  +  +   ER  DIY+RL  ERI+F+  ++ D +A  + AQ+L+L++E+  K I LY
Sbjct: 8   VPYRLPGSQM-ERWVDIYTRLGVERILFLGSEVNDGIANSLVAQMLYLDSEDSSKPIYLY 66

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDT+Q++K  + T C+G AASMG+ LL+AG KG R ALP++RI++H
Sbjct: 67  INSPGGSVTAGLAIYDTIQYVKSEVVTICVGLAASMGAFLLAAGTKGKRVALPHSRIMIH 126

Query: 139 QPSGGF-SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP GG    QASDIE  A++I+++K  LN       G+++E++EK  DRD+ +SA EA +
Sbjct: 127 QPLGGTSRRQASDIEIEAREILRMKEMLNRSLSDMSGQSFEKIEKDTDRDYFLSAEEAKE 186

Query: 198 WGVVDKVLMSRID 210
           +G++D+V+    +
Sbjct: 187 YGLIDRVISHPNE 199


>gi|124023703|ref|YP_001018010.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus str. MIT 9303]
 gi|123963989|gb|ABM78745.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9303]
          Length = 200

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 94/193 (48%), Positives = 138/193 (71%), Gaps = 2/193 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP  +  +   ER  DIY+RL  ERI+F+  ++ D +A  + AQ+L+L++E+  K I LY
Sbjct: 8   VPYRLPGSQM-ERWVDIYTRLGVERILFLGQEVSDGVANSLVAQMLYLDSEDSTKPIYLY 66

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDTM+++K  + T C+G AASMG+ LL+AG KG R ALP++RI++H
Sbjct: 67  INSPGGSVTAGLAIYDTMKYVKSDVVTICVGLAASMGAFLLTAGTKGKRLALPHSRIMIH 126

Query: 139 QPSGGF-SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP GG    QASDIE  A++I++IK  LN    +  G+T+E++EK  DRD+ +SA+EA D
Sbjct: 127 QPLGGTNQRQASDIEIEAREILRIKDMLNHSMAELTGQTFEKIEKDTDRDYFLSAAEAKD 186

Query: 198 WGVVDKVLMSRID 210
           +G++D+V+    +
Sbjct: 187 YGLIDRVIAHPNE 199


>gi|145342132|ref|XP_001416147.1| chloroplast Clp protease, subunit of ClpP peptidase complex
           [Ostreococcus lucimarinus CCE9901]
 gi|144576372|gb|ABO94440.1| chloroplast Clp protease, subunit of ClpP peptidase complex
           [Ostreococcus lucimarinus CCE9901]
          Length = 251

 Score =  245 bits (627), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 90/199 (45%), Positives = 133/199 (66%), Gaps = 6/199 (3%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G  P+V+E      R   + S+L+ +RI+ + G ++D    LI AQLL+L+A +P K+I+
Sbjct: 49  GPSPIVLE------RFQSVASQLMSQRIIRLGGAVDDDSCNLIVAQLLWLDAADPTKDIT 102

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LY+NSPGG VTAGMA++DTM+ I+P +ST C+G AASMG+ LL++G  G R++LPN+RI+
Sbjct: 103 LYVNSPGGSVTAGMAVFDTMRHIRPNVSTVCVGLAASMGAFLLASGHPGKRYSLPNSRIM 162

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA+DIE  A +I+  K  LN    +   K  E V +  DRD  MSA EA 
Sbjct: 163 IHQPLGGAQGQAADIEIQANEIMHHKSTLNGYLAEFTKKPLETVMEDTDRDFFMSAKEAV 222

Query: 197 DWGVVDKVLMSRIDIEEKS 215
           ++G++D ++    D+  K+
Sbjct: 223 EYGLIDAIIEHPTDVAVKA 241


>gi|298207459|ref|YP_003715638.1| ATP-dependent Clp protease proteolytic subunit 2 [Croceibacter
           atlanticus HTCC2559]
 gi|83850095|gb|EAP87963.1| ATP-dependent Clp protease proteolytic subunit 2 [Croceibacter
           atlanticus HTCC2559]
          Length = 224

 Score =  245 bits (627), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 91/194 (46%), Positives = 138/194 (71%)

Query: 14  VFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQK 73
           + +GL P ++E+       +D++SRL+ +RI+F+   I D +A ++ AQLLFLE+ +  K
Sbjct: 30  IPVGLTPNIIEERQMNIAIFDVFSRLMMDRIIFLGTGINDQVANIVQAQLLFLESTDANK 89

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I +YINSPGG V AG+ IYDTMQFIKP ++T C G AASMG++LL AG +G R  LP++
Sbjct: 90  DIQIYINSPGGSVYAGLGIYDTMQFIKPDVATICTGMAASMGAVLLCAGAEGKRSGLPHS 149

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           R+++HQP GG  GQASDIE  A++I+ +K  L +I  K+ G+ Y++V +  DRD+ M A 
Sbjct: 150 RVMIHQPLGGAQGQASDIEITAREILTLKEELYKIISKHSGQPYDKVYEDSDRDYWMKAD 209

Query: 194 EACDWGVVDKVLMS 207
           +A ++G++D+VL  
Sbjct: 210 KAKEYGMIDEVLKR 223


>gi|33861870|ref|NP_893431.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
 gi|67460515|sp|Q7V0F1|CLPP2_PROMP RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|33640238|emb|CAE19773.1| Clp protease proteolytic subunit [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 201

 Score =  245 bits (627), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 90/193 (46%), Positives = 135/193 (69%), Gaps = 2/193 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP  +  +   ER  DIY+RL  ERI+F+  ++ D +A  + AQ+L+L++++  K I LY
Sbjct: 8   VPYRLPGSQY-ERWVDIYTRLGVERILFLGQEVNDGIANSLVAQMLYLDSDDNTKPIYLY 66

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDT++++K  + T C+G AASMG+ LL AG KG R ALP++RI++H
Sbjct: 67  INSPGGSVTAGLAIYDTIKYVKSDVVTICVGLAASMGAFLLGAGTKGKRVALPHSRIMIH 126

Query: 139 QPSGGF-SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP GG    QASDIE  A++I++IK  LN       G+++E++EK  DRD+ +SA EA +
Sbjct: 127 QPLGGTSQRQASDIEIEAREILRIKDMLNHSMSDMTGQSFEKIEKDTDRDYFLSAEEAKN 186

Query: 198 WGVVDKVLMSRID 210
           +G++D+V+    +
Sbjct: 187 YGLIDRVISHPSE 199


>gi|297571128|ref|YP_003696902.1| endopeptidase Clp [Arcanobacterium haemolyticum DSM 20595]
 gi|296931475|gb|ADH92283.1| Endopeptidase Clp [Arcanobacterium haemolyticum DSM 20595]
          Length = 238

 Score =  245 bits (627), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 97/204 (47%), Positives = 141/204 (69%), Gaps = 1/204 (0%)

Query: 4   EGCAKKDSEDVFLGLVPMVVEQTNRGERSYD-IYSRLLKERIVFVTGQIEDHMATLICAQ 62
           E   K+ +E  ++   P +   ++ G    D IY+RLLKERI+++  Q++D  A +ICAQ
Sbjct: 14  EARHKRHNEGEYVTTTPQLAGGSSNGLGLGDSIYNRLLKERIIWLGDQVKDENANMICAQ 73

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           LL L AE+P+K+I LYINSPGG VTAGMAI+DTMQ+IKP ++T  MG AASMG  LL+AG
Sbjct: 74  LLLLAAEDPEKDIYLYINSPGGSVTAGMAIFDTMQYIKPDVATVGMGLAASMGQFLLTAG 133

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
            KG R+  P+ R+L+HQP GG  G A++I  +A  I+++K+ L+E+  K+ GK+ E++  
Sbjct: 134 AKGKRYITPHTRVLMHQPLGGAGGTATEIRINADLILQMKQELSELNAKHTGKSVEQILV 193

Query: 183 TLDRDHIMSASEACDWGVVDKVLM 206
             DRDH  +A EA ++G VD ++ 
Sbjct: 194 DSDRDHWFTAREALEYGFVDHIIE 217


>gi|257439814|ref|ZP_05615569.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Faecalibacterium prausnitzii A2-165]
 gi|257197723|gb|EEU96007.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Faecalibacterium prausnitzii A2-165]
          Length = 198

 Score =  245 bits (626), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 101/198 (51%), Positives = 146/198 (73%), Gaps = 5/198 (2%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP VVEQ+  GERSYDI+SRLL +RI+ ++  + D  A+L+ AQLL+LE ++P K+I
Sbjct: 1   MSFVPYVVEQSAHGERSYDIFSRLLNDRIIVLSEDVNDTSASLVVAQLLYLEGQDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG ++AGMAI+DTMQ+IK  +ST CMG AASMG+ LL+ G KG RFALPN+ I
Sbjct: 61  SLYINSPGGSISAGMAIHDTMQYIKCDVSTICMGMAASMGAFLLAGGTKGKRFALPNSEI 120

Query: 136 LLHQP-----SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           L+HQP      GG SGQ +DI+ HA+ +V I+ ++N +  +  G+  E+++   +RD+ M
Sbjct: 121 LIHQPLIGGQGGGLSGQTTDIKIHAEHMVYIRDKMNHMLSEYTGQPLEKIQLDTERDNYM 180

Query: 191 SASEACDWGVVDKVLMSR 208
           +A EA ++G++D+V+  R
Sbjct: 181 TALEAKEYGLIDEVIAHR 198


>gi|237739236|ref|ZP_04569717.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           2_1_31]
 gi|229422844|gb|EEO37891.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           2_1_31]
          Length = 193

 Score =  245 bits (626), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 104/190 (54%), Positives = 143/190 (75%), Gaps = 2/190 (1%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P V++   + ER+YDIYSRLLK+RI+FV   I++++A  I AQLL+LE+E+P+K+I +YI
Sbjct: 4   PTVIDNNGKSERAYDIYSRLLKDRIIFVGTAIDENVANSIIAQLLYLESEDPEKDIIMYI 63

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VT GMAIYDTM +IKP + T C+GQAASMG+ LLS+G KG RFAL N+RI++HQ
Sbjct: 64  NSPGGSVTDGMAIYDTMNYIKPDVQTVCVGQAASMGAFLLSSGAKGKRFALENSRIMIHQ 123

Query: 140 P--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           P  SGG  GQA+DI  HA +++KIK RL E+  +N GKT E++    +RD+ +S+ EA  
Sbjct: 124 PLISGGLKGQATDISIHANELLKIKDRLAELLARNTGKTKEQILNDTERDNYLSSEEAVR 183

Query: 198 WGVVDKVLMS 207
           +G++D V   
Sbjct: 184 YGLIDSVFKR 193


>gi|225621123|ref|YP_002722381.1| ATP-dependent Clp protease proteolytic subunit [Brachyspira
           hyodysenteriae WA1]
 gi|259585945|sp|C0QW91|CLPP_BRAHW RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|225215943|gb|ACN84677.1| ATP-dependent Clp protease proteolytic subunit [Brachyspira
           hyodysenteriae WA1]
          Length = 198

 Score =  245 bits (626), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 107/197 (54%), Positives = 152/197 (77%), Gaps = 1/197 (0%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           E  ++  +P V+EQT+RGERSYDIYSRLLK+RI+F+ G+I D +A ++ AQLLFLE+ +P
Sbjct: 2   EKNYMT-IPYVIEQTSRGERSYDIYSRLLKDRIIFLGGEINDDVANVVIAQLLFLESADP 60

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+ISLYINSPGGVVTA + +YDTMQ++KP ++T C+GQAAS G+LLL+ G KG RFA  
Sbjct: 61  EKDISLYINSPGGVVTAALGMYDTMQYVKPDVATLCVGQAASAGALLLAGGAKGKRFATA 120

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+RI++HQPSGG  G  +D+E   ++ +++K  LN I   + G+  +++E  +DRD+ MS
Sbjct: 121 NSRIMIHQPSGGSRGMVTDMEIQLKETIRLKSILNNIMANHTGQDIKKLEADMDRDYFMS 180

Query: 192 ASEACDWGVVDKVLMSR 208
           A EA D+G++DKV  SR
Sbjct: 181 AEEAKDYGIIDKVFSSR 197


>gi|124007704|ref|ZP_01692407.1| Clp protease [Microscilla marina ATCC 23134]
 gi|123986826|gb|EAY26598.1| Clp protease [Microscilla marina ATCC 23134]
          Length = 195

 Score =  245 bits (626), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 94/190 (49%), Positives = 135/190 (71%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           + P ++E+     R  D++SRL+ +RI+F+   ++D++A +I AQLLFLE+ + +K+I L
Sbjct: 1   MTPNIIEERPVNFRPIDVFSRLISDRIIFLGTAVDDNVANVITAQLLFLESVDAKKDILL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+ IYDTMQ++ P I+T C G AAS G++LL+ G  G R AL +ARI++
Sbjct: 61  YINSPGGSVYAGLGIYDTMQYVGPDIATICTGMAASFGAVLLTGGAPGKRSALEHARIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A+  V +KR LNEI  K+CGKT E++E   DRD  + A  A +
Sbjct: 121 HQPHGGAQGQASDIEITAKQYVLLKRELNEIIAKHCGKTPEQLEADGDRDFWLKADAAKE 180

Query: 198 WGVVDKVLMS 207
           +G++D+VL+ 
Sbjct: 181 YGLIDEVLVR 190


>gi|170592242|ref|XP_001900878.1| Probable ClpP-like protease [Brugia malayi]
 gi|158591745|gb|EDP30349.1| Probable ClpP-like protease, putative [Brugia malayi]
          Length = 218

 Score =  245 bits (626), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 111/193 (57%), Positives = 144/193 (74%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +PMVV+Q  R ER YDIYSRLLK+RIV V   I D +A  I AQLLFL+ E+ +  I++Y
Sbjct: 26  IPMVVDQDGRIERVYDIYSRLLKDRIVCVMTSINDQVAASIIAQLLFLQGESAKSTINMY 85

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           I  PGG VTAG+ IYDTMQ+I  P++T+C+GQAASMGSLLLSAG KGMR +LPNARI++H
Sbjct: 86  IMCPGGSVTAGLGIYDTMQYISAPVATWCIGQAASMGSLLLSAGAKGMRTSLPNARIMVH 145

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  GQASDI   A++I ++K RLN+IY  + G+  E +E+ LDRD  MS  EA  +
Sbjct: 146 QPSGGAEGQASDILIRAEEIGRLKTRLNKIYAVHTGQDIETIEEVLDRDRYMSPEEAKQF 205

Query: 199 GVVDKVLMSRIDI 211
           G++D++  S  D+
Sbjct: 206 GIIDQIETSAFDL 218


>gi|328948166|ref|YP_004365503.1| ATP-dependent Clp protease proteolytic subunit [Treponema
           succinifaciens DSM 2489]
 gi|328448490|gb|AEB14206.1| ATP-dependent Clp protease proteolytic subunit [Treponema
           succinifaciens DSM 2489]
          Length = 203

 Score =  245 bits (626), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 97/191 (50%), Positives = 142/191 (74%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            L+P V+E++  GER+YD+YSRLLK+RI+FV G+I D  A LI AQ+L+LE+ENP+K+IS
Sbjct: 7   TLIPTVIERSGNGERAYDLYSRLLKDRIIFVDGEIRDETADLIVAQILYLESENPEKDIS 66

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VTAG+AIYDTMQ+++  I T CMGQAASMG+++L+ G  G R+ALP++R++
Sbjct: 67  MYINSPGGSVTAGLAIYDTMQYVRCDIQTICMGQAASMGAIILAGGTIGKRYALPSSRVM 126

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQ SDI   A++I ++K+   +      GK  E +   ++RD  M A +A 
Sbjct: 127 IHQPWGGTQGQESDIAIQAKEIGRLKKLSIKYLSMQTGKKEEVIAADMERDFYMPAEDAK 186

Query: 197 DWGVVDKVLMS 207
           ++G++D ++ S
Sbjct: 187 NYGIIDHIMNS 197


>gi|262066529|ref|ZP_06026141.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium
           periodonticum ATCC 33693]
 gi|294783780|ref|ZP_06749104.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium
           sp. 1_1_41FAA]
 gi|291379763|gb|EFE87281.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium
           periodonticum ATCC 33693]
 gi|294480658|gb|EFG28435.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium
           sp. 1_1_41FAA]
          Length = 193

 Score =  245 bits (626), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 104/190 (54%), Positives = 143/190 (75%), Gaps = 2/190 (1%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P V++   + ER+YDIYSRLLK+RI+FV   I++++A  I AQLL+LE+E+P+K+I +YI
Sbjct: 4   PTVIDNNGKSERAYDIYSRLLKDRIIFVGTAIDENVANSIIAQLLYLESEDPEKDIIMYI 63

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VT GMAIYDTM +IKP + T C+GQAASMG+ LLS+G KG RFAL N+RI++HQ
Sbjct: 64  NSPGGSVTDGMAIYDTMNYIKPDVQTVCVGQAASMGAFLLSSGAKGKRFALENSRIMIHQ 123

Query: 140 P--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           P  SGG  GQA+DI  HA +++KIK RL E+  +N GKT E++    +RD+ +S+ EA  
Sbjct: 124 PLISGGLKGQATDISIHANELLKIKDRLAELLARNTGKTKEQILNDTERDNYLSSEEAVR 183

Query: 198 WGVVDKVLMS 207
           +G++D V   
Sbjct: 184 YGLIDSVFRR 193


>gi|317455555|pdb|3Q7H|A Chain A, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 gi|317455556|pdb|3Q7H|B Chain B, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 gi|317455557|pdb|3Q7H|C Chain C, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 gi|317455558|pdb|3Q7H|D Chain D, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 gi|317455559|pdb|3Q7H|E Chain E, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 gi|317455560|pdb|3Q7H|F Chain F, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 gi|317455561|pdb|3Q7H|G Chain G, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 gi|317455562|pdb|3Q7H|H Chain H, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 gi|317455563|pdb|3Q7H|I Chain I, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 gi|317455564|pdb|3Q7H|J Chain J, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 gi|317455565|pdb|3Q7H|K Chain K, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 gi|317455566|pdb|3Q7H|L Chain L, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 gi|317455567|pdb|3Q7H|M Chain M, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
 gi|317455568|pdb|3Q7H|N Chain N, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
           Protease From Coxiella Burnetii
          Length = 195

 Score =  245 bits (626), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 104/192 (54%), Positives = 142/192 (73%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP VVEQT+RGER+YDIYSRLLK+R++F+ GQ+EDH A L  AQ LFLE+ENP K+I+L
Sbjct: 4   LVPXVVEQTSRGERAYDIYSRLLKDRVIFLVGQVEDHXANLAIAQXLFLESENPNKDINL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VT+  AIYDT QF+KP + T C+GQAAS G+LLL+ G KG R  LP++ + +
Sbjct: 64  YINSPGGAVTSAXAIYDTXQFVKPDVRTLCIGQAASAGALLLAGGAKGKRHCLPHSSVXI 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQ  GG+ GQ +DI+ HA+   ++  +LN+I  K+ GK  E VEK  +RD+ ++  EA +
Sbjct: 124 HQVLGGYQGQGTDIQIHAKQTQRVSDQLNQILAKHTGKDIERVEKDTNRDYFLTPEEAVE 183

Query: 198 WGVVDKVLMSRI 209
           +G++D +   R 
Sbjct: 184 YGLIDSIFKERP 195


>gi|313114091|ref|ZP_07799643.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310623500|gb|EFQ06903.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 198

 Score =  245 bits (625), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 101/198 (51%), Positives = 148/198 (74%), Gaps = 5/198 (2%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP VVEQ++ GERSYDI+SRLL +RI+ ++  + D  A+L+ AQLL+LE ++P K+I
Sbjct: 1   MSFVPYVVEQSSHGERSYDIFSRLLNDRIIVLSEDVNDTSASLVVAQLLYLEGQDPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG ++AGMAI+DTMQ+IK  +ST CMG AASMG+ LL++G KG RFALPN+ I
Sbjct: 61  SLYINSPGGSISAGMAIHDTMQYIKCDVSTICMGMAASMGAFLLASGTKGKRFALPNSEI 120

Query: 136 LLHQP-----SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           L+HQP      GG SGQ +DI+ HA+ +V I+ ++N +  +  G+  E+++   +RD+ M
Sbjct: 121 LIHQPLIGGQGGGLSGQTTDIKIHAEHMVYIRDKMNRMLSEYTGQPLEKIQLDTERDNYM 180

Query: 191 SASEACDWGVVDKVLMSR 208
           SA +A ++G++D+V+  R
Sbjct: 181 SALQAKEYGLIDEVIAHR 198


>gi|302833543|ref|XP_002948335.1| hypothetical protein VOLCADRAFT_80119 [Volvox carteri f.
           nagariensis]
 gi|300266555|gb|EFJ50742.1| hypothetical protein VOLCADRAFT_80119 [Volvox carteri f.
           nagariensis]
          Length = 256

 Score =  245 bits (625), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 85/208 (40%), Positives = 138/208 (66%), Gaps = 11/208 (5%)

Query: 5   GCAKKDSEDVFL-----GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLI 59
             + +D     +        P+V+E      R   + S+L ++RIV + G ++D MA L+
Sbjct: 41  AVSSRDPHPPVICQGPPPPNPLVIE------RFQGVVSQLFQQRIVRLGGAVDDDMANLL 94

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
            AQLL+L++ +P+++I++Y+NSPGG VTAGMA++DTM+ I+P +ST C+G AASMG+ +L
Sbjct: 95  VAQLLYLDSVDPKRDITMYVNSPGGSVTAGMAVFDTMRHIRPDVSTCCIGMAASMGAFIL 154

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
           ++G++G R++LPN+RI++HQP GG  GQA+DIE  A +I+  K  LN    +  G++ E 
Sbjct: 155 TSGQQGKRYSLPNSRIMIHQPLGGAQGQATDIEIQANEILHHKLTLNGYLAQFSGQSMET 214

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVLMS 207
           + K  DRD  MS  EA ++G++D ++  
Sbjct: 215 ITKDTDRDFFMSPQEAIEYGLIDAIIAK 242


>gi|228472130|ref|ZP_04056896.1| Clp protease [Capnocytophaga gingivalis ATCC 33624]
 gi|228276333|gb|EEK15057.1| Clp protease [Capnocytophaga gingivalis ATCC 33624]
          Length = 219

 Score =  245 bits (625), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 96/204 (47%), Positives = 139/204 (68%)

Query: 4   EGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQL 63
            G +    + +   + P ++E+        D++SRL+ +RI+F+   +  H+A +I AQL
Sbjct: 15  RGVSSTYYDKIISSMTPYIMEERQLNVTQMDVFSRLMMDRIIFLGTDVNSHVANIIQAQL 74

Query: 64  LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           LFLE+ +  K+I +YINSPGG V +G+ IYDTMQFIKP ++T C G AASM ++LL AG 
Sbjct: 75  LFLESLDASKDIQIYINSPGGEVYSGLGIYDTMQFIKPEVATICTGMAASMAAVLLCAGA 134

Query: 124 KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
           KG R ALP++R+++HQP GG  GQASDIE  A++I+KIK  L +I   + GK+  EV +T
Sbjct: 135 KGKRSALPHSRVMIHQPLGGAQGQASDIEITAREILKIKEELAQIIAHHSGKSLAEVIQT 194

Query: 184 LDRDHIMSASEACDWGVVDKVLMS 207
            DRD+ M ASEA D+G++D+VL  
Sbjct: 195 GDRDYWMIASEAKDFGMIDEVLTR 218


>gi|300870901|ref|YP_003785772.1| ATP-dependent Clp protease proteolytic subunit ClpP [Brachyspira
           pilosicoli 95/1000]
 gi|300688600|gb|ADK31271.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brachyspira
           pilosicoli 95/1000]
          Length = 209

 Score =  245 bits (625), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 110/206 (53%), Positives = 159/206 (77%), Gaps = 1/206 (0%)

Query: 3   FEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQ 62
           F+   KK  E  ++  +P V+EQT+RGERSYDIYSRLLK+RI+F+ G+I D +A ++ AQ
Sbjct: 4   FDRVDKKYIEKSYMT-IPYVIEQTSRGERSYDIYSRLLKDRIIFLGGEINDDVANVVIAQ 62

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           LLFLE+ +P+K+ISLYINSPGGVVTA + +YDTMQ++KP ++T C+GQAAS G+LLL+ G
Sbjct: 63  LLFLESADPEKDISLYINSPGGVVTAALGMYDTMQYVKPDVATLCVGQAASAGALLLAGG 122

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
             G RFA  N+RI++HQPSGG  G  +D+E   ++ +++K  LN+I+VK+ G+  +++E 
Sbjct: 123 ASGKRFATVNSRIMIHQPSGGSRGMVTDMEIQLRETIRLKAILNDIFVKHTGQELKKLEA 182

Query: 183 TLDRDHIMSASEACDWGVVDKVLMSR 208
            +DRD+ MSA EA ++G++DKV  SR
Sbjct: 183 DMDRDYFMSAEEAKEYGIIDKVFSSR 208


>gi|21672724|ref|NP_660791.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
           str. Sg (Schizaphis graminum)]
 gi|25008301|sp|Q8K990|CLPP_BUCAP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|21623368|gb|AAM68002.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
           str. Sg (Schizaphis graminum)]
          Length = 197

 Score =  245 bits (625), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 114/191 (59%), Positives = 154/191 (80%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           L+PMVVEQ +RGERSYDIYSRLLKERI+F+TG IED+MA+ I AQ+LFLEAE+  K+I L
Sbjct: 7   LIPMVVEQHSRGERSYDIYSRLLKERIIFITGTIEDNMASSIVAQMLFLEAESLDKDIFL 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG++T+GM+IYDTMQFIKP ++T C+GQA SM + LLS+G KG R  LPNARI++
Sbjct: 67  YINSPGGIITSGMSIYDTMQFIKPDVNTICIGQACSMAAFLLSSGTKGKRSCLPNARIMI 126

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG+ GQASDI  HA++I K+K++LN++   N G++ +++ K  +RD  +SA E+  
Sbjct: 127 HQPLGGYQGQASDIAIHAEEINKMKKKLNKLMSLNTGQSIKKINKDTERDCFLSAHESIK 186

Query: 198 WGVVDKVLMSR 208
           +G++D +L  R
Sbjct: 187 YGLIDLILTQR 197


>gi|293189652|ref|ZP_06608369.1| Clp protease [Actinomyces odontolyticus F0309]
 gi|292821390|gb|EFF80332.1| Clp protease [Actinomyces odontolyticus F0309]
          Length = 216

 Score =  245 bits (625), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 95/182 (52%), Positives = 126/182 (69%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLLKERI+++ G++ D  A +ICAQLL L AE+P ++I LYINSPGG VTAGMAIYD
Sbjct: 34  VYQRLLKERIIWLGGEVRDDNANVICAQLLLLAAEDPDRDIYLYINSPGGSVTAGMAIYD 93

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ+IKP + T  MG AASMG  LL+AG  G R+  P+ R+LLHQP GG  G A++I  +
Sbjct: 94  TMQYIKPDVVTVGMGMAASMGQFLLTAGAPGKRYITPHTRVLLHQPLGGAGGSATEIRIN 153

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           A  I+ +K+ L  I     GKT E+VE   DRDH  +A EA ++G VD+V+ S  +I  +
Sbjct: 154 ADLILGMKKELASITAARTGKTVEQVEADGDRDHWFTAQEALEYGFVDRVIDSPQEIGTR 213

Query: 215 SK 216
            +
Sbjct: 214 GE 215


>gi|302760453|ref|XP_002963649.1| hypothetical protein SELMODRAFT_67117 [Selaginella moellendorffii]
 gi|302785934|ref|XP_002974738.1| hypothetical protein SELMODRAFT_57153 [Selaginella moellendorffii]
 gi|300157633|gb|EFJ24258.1| hypothetical protein SELMODRAFT_57153 [Selaginella moellendorffii]
 gi|300168917|gb|EFJ35520.1| hypothetical protein SELMODRAFT_67117 [Selaginella moellendorffii]
          Length = 235

 Score =  245 bits (625), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 90/191 (47%), Positives = 129/191 (67%), Gaps = 6/191 (3%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G  PM+ E      R   + ++L + RI+   G ++D MA LI AQLL+L+A +P+K+I 
Sbjct: 41  GPPPMLQE------RFQSVITQLFQHRIIRCGGAVDDDMANLIVAQLLYLDAADPKKDIV 94

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+NSPGG VTAGMA++DTM+ I+P +ST C+G AASMG+ LLSAG KG R++LPN+RI+
Sbjct: 95  MYVNSPGGSVTAGMAVFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIM 154

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQ SDIE  A +I+  K  LN     + G+  E + +  DRD  MS  EA 
Sbjct: 155 IHQPLGGAQGQQSDIEIQANEILHHKANLNSYLSYHTGQPLERIIQDTDRDFFMSPKEAQ 214

Query: 197 DWGVVDKVLMS 207
           ++G++D V+ +
Sbjct: 215 EYGLIDGVISN 225


>gi|120434592|ref|YP_860283.1| ATP-dependent Clp protease proteolytic subunit [Gramella forsetii
           KT0803]
 gi|117576742|emb|CAL65211.1| ATP-dependent Clp protease proteolytic subunit [Gramella forsetii
           KT0803]
          Length = 225

 Score =  245 bits (625), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 92/191 (48%), Positives = 137/191 (71%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G+ P ++E+      + D++SRL+ +RI+F+   I + +A ++ AQLLFLE+ +  K+I 
Sbjct: 33  GMTPNIIEERQMNAVAMDVFSRLMMDRIIFLGTGINEQVANIVQAQLLFLESTDASKDIQ 92

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG V AG+ IYDTMQFIKP ++T C G AASMG++LL AGE G R  LP++R++
Sbjct: 93  IYINSPGGSVYAGLGIYDTMQFIKPDVATICTGMAASMGAVLLCAGEDGKRSGLPHSRVM 152

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQASDIE  A++IV +K  L +I  K+ G+TYE+V +  DRD+ M A +A 
Sbjct: 153 IHQPMGGAQGQASDIEITAREIVTLKEELYKIIAKHSGQTYEKVHEDSDRDYWMKAEKAK 212

Query: 197 DWGVVDKVLMS 207
           ++G++D++L  
Sbjct: 213 EYGMIDEILKR 223


>gi|116073334|ref|ZP_01470596.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           RS9916]
 gi|116068639|gb|EAU74391.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           RS9916]
          Length = 200

 Score =  245 bits (625), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 91/193 (47%), Positives = 134/193 (69%), Gaps = 2/193 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP  +  +   ER  DIY+RL  ERI+F+  ++ D +A  + AQ+L+L++E+  K I LY
Sbjct: 8   VPYRLPGSQM-ERWVDIYTRLGVERILFLGSEVNDAVANSLVAQMLYLDSEDSSKPIYLY 66

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDTMQ++K  + T C+G AASMG+ LL AG KG R ALP++RI++H
Sbjct: 67  INSPGGSVTAGLAIYDTMQYVKSDVVTICVGLAASMGAFLLGAGTKGKRLALPHSRIMIH 126

Query: 139 QP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP  G    QASDIE  A++I++IK  LN       G+++E++EK  DRD+ +SA +A +
Sbjct: 127 QPLGGTAQRQASDIEIEAREILRIKEMLNRSMADMTGQSFEKIEKDTDRDYFLSAEDAKN 186

Query: 198 WGVVDKVLMSRID 210
           +G++D+V+    +
Sbjct: 187 YGLIDRVIAHPNE 199


>gi|163848364|ref|YP_001636408.1| endopeptidase Clp [Chloroflexus aurantiacus J-10-fl]
 gi|222526286|ref|YP_002570757.1| Endopeptidase Clp [Chloroflexus sp. Y-400-fl]
 gi|163669653|gb|ABY36019.1| Endopeptidase Clp [Chloroflexus aurantiacus J-10-fl]
 gi|222450165|gb|ACM54431.1| Endopeptidase Clp [Chloroflexus sp. Y-400-fl]
          Length = 197

 Score =  245 bits (625), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 91/189 (48%), Positives = 135/189 (71%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            VP +VE+T+RGERS+DI+SRLLKER+V +   I+D +A+ + AQLL L+ ++P+++I +
Sbjct: 5   PVPTIVERTSRGERSWDIFSRLLKERVVLIGEPIDDELASSVIAQLLVLQQQDPERDIWM 64

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+ AG+AIYDTMQ + P I T C+G+AASM ++LL AG KG RFALP+A I  
Sbjct: 65  YINSPGGVIRAGLAIYDTMQLVTPDICTVCVGRAASMATVLLCAGTKGKRFALPHATIHS 124

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           H   GG  G A D++    ++++++R L EI  K+ G+  E +E    RD  M+A +A +
Sbjct: 125 HPAGGGAEGYAPDVQIAVDEMLRLQRLLREIMAKHSGQPVERLEADFSRDFYMTAPQALE 184

Query: 198 WGVVDKVLM 206
           +G++D +L 
Sbjct: 185 YGLIDAILT 193


>gi|308800514|ref|XP_003075038.1| ClpP1 Clp protease proteolytic subunit ClpP (IC) [Ostreococcus
           tauri]
 gi|119358863|emb|CAL52310.2| ClpP1 Clp protease proteolytic subunit ClpP (IC) [Ostreococcus
           tauri]
          Length = 252

 Score =  244 bits (624), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 93/197 (47%), Positives = 133/197 (67%), Gaps = 6/197 (3%)

Query: 21  MVVEQTNRG------ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
            VV+Q  +G      ER   + S+L+ +RIV + G ++D    LI AQLL+L+A +P K+
Sbjct: 42  YVVDQQGKGPSPIVVERFQSVASQLMSQRIVRLGGAVDDDGCNLIVAQLLWLDAADPDKD 101

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I+LYINSPGG VTAGMA++DTM+ I+P +ST C+G AASMG+ LL++GE G R++LPN+R
Sbjct: 102 ITLYINSPGGSVTAGMAVFDTMRHIRPNVSTVCVGLAASMGAFLLASGEAGKRYSLPNSR 161

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQP GG  GQA+DIE  A +I+  K  LN    +   K  + V +  DRD  MSA E
Sbjct: 162 IMIHQPLGGAQGQAADIEIQANEIMHHKSTLNGYLAEFTKKPLQTVMEDTDRDFFMSAQE 221

Query: 195 ACDWGVVDKVLMSRIDI 211
           A ++G++D ++    DI
Sbjct: 222 ALEYGLIDSIIEHPADI 238


>gi|154509334|ref|ZP_02044976.1| hypothetical protein ACTODO_01859 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798968|gb|EDN81388.1| hypothetical protein ACTODO_01859 [Actinomyces odontolyticus ATCC
           17982]
          Length = 216

 Score =  244 bits (624), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 95/182 (52%), Positives = 126/182 (69%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLLKERI+++ G++ D  A +ICAQLL L AE+P ++I LYINSPGG VTAGMAIYD
Sbjct: 34  VYQRLLKERIIWLGGEVRDENANVICAQLLLLAAEDPDRDIYLYINSPGGSVTAGMAIYD 93

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ+IKP + T  MG AASMG  LL+AG  G R+  P+ R+LLHQP GG  G A++I  +
Sbjct: 94  TMQYIKPDVVTVGMGMAASMGQFLLTAGAPGKRYITPHTRVLLHQPLGGAGGSATEIRIN 153

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           A  I+ +K+ L  I     GKT E+VE   DRDH  +A EA ++G VD+V+ S  +I  +
Sbjct: 154 ADLILGMKKELAAITASRTGKTVEQVEADGDRDHWFTAQEALEYGFVDRVIDSPQEIGTR 213

Query: 215 SK 216
            +
Sbjct: 214 GE 215


>gi|296127043|ref|YP_003634295.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brachyspira
           murdochii DSM 12563]
 gi|296018859|gb|ADG72096.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brachyspira
           murdochii DSM 12563]
          Length = 200

 Score =  244 bits (624), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 108/199 (54%), Positives = 153/199 (76%), Gaps = 1/199 (0%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           D E  ++  +P V+EQT+RGERSYDIYSRLLK+RI+F+ G+I D +A ++ AQLLFLE+ 
Sbjct: 2   DLERNYMT-IPYVIEQTSRGERSYDIYSRLLKDRIIFLGGEINDDVANIVIAQLLFLESA 60

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           +P+K+ISLYINSPGGVVTA + +YDTMQ++KP ++T C+GQAAS G+LLL+ G KG RFA
Sbjct: 61  DPEKDISLYINSPGGVVTAALGMYDTMQYVKPDVATLCVGQAASAGALLLAGGAKGKRFA 120

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
             N+RI++HQPSGG  G  +D+E   ++ +++K  LN I   + G+  +++E  +DRD+ 
Sbjct: 121 TANSRIMIHQPSGGSRGMVTDMEIQLKETIRLKSILNNIMANHTGQDIKKLEADMDRDYF 180

Query: 190 MSASEACDWGVVDKVLMSR 208
           MSA EA D+G++DKV  SR
Sbjct: 181 MSADEAKDYGIIDKVFSSR 199


>gi|257463897|ref|ZP_05628283.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           D12]
 gi|317061426|ref|ZP_07925911.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           D12]
 gi|313687102|gb|EFS23937.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           D12]
          Length = 195

 Score =  244 bits (623), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 97/192 (50%), Positives = 140/192 (72%), Gaps = 3/192 (1%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P V++   R ER +DI+SRLL++RI+F+  ++ D +A  + AQLL+LEAE+P K+I LYI
Sbjct: 4   PTVIDNDGRQERHFDIFSRLLRDRIIFLGTEVNDQVAASLVAQLLYLEAEDPTKDIILYI 63

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V+AG+AIYDTM ++KP I T C+GQAASMG+ LL+AG KG RFAL N+RI++HQ
Sbjct: 64  NSPGGSVSAGLAIYDTMNYVKPDIQTVCIGQAASMGAFLLAAGTKGKRFALENSRIMIHQ 123

Query: 140 PSGGFS---GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           P GG      QA+D++  A+++   K +L  I  KN GK+ EEV +  +RD+ ++A EA 
Sbjct: 124 PLGGTGSGYHQATDVQIIAKELQATKEKLAGIIAKNTGKSKEEVLEDTERDNYLTAEEAV 183

Query: 197 DWGVVDKVLMSR 208
            +G++D V+ +R
Sbjct: 184 KYGLIDMVMKAR 195


>gi|33866183|ref|NP_897742.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           WH 8102]
 gi|67460509|sp|Q7U5Q2|CLPP3_SYNPX RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
           AltName: Full=Endopeptidase Clp 3
 gi|33639158|emb|CAE08164.1| ATP-dependent Clp protease proteolytic subunit 3 [Synechococcus sp.
           WH 8102]
          Length = 200

 Score =  244 bits (623), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 91/193 (47%), Positives = 136/193 (70%), Gaps = 2/193 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP  +  +   ER  DIY+RL  ERI+F+  ++ D +A  + AQ+L+L++E+  K I LY
Sbjct: 8   VPYRLPGSQM-ERWVDIYTRLGVERILFLGSEVNDGIANSLVAQMLYLDSEDSSKPIYLY 66

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDT+Q++K  + T C+G AASMG+ LL+AG KG R ALP++RI++H
Sbjct: 67  INSPGGSVTAGLAIYDTIQYVKSEVVTICVGLAASMGAFLLAAGTKGKRVALPHSRIMIH 126

Query: 139 QPSGGF-SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP GG    QASDIE  A++I+++K  LN       G++++++EK  DRD+ +SA EA D
Sbjct: 127 QPLGGTSRRQASDIEIEAREILRMKEMLNRSLSDMSGQSFDKIEKDTDRDYFLSAEEAKD 186

Query: 198 WGVVDKVLMSRID 210
           +G++D+V+    +
Sbjct: 187 YGLIDRVISHPNE 199


>gi|188995413|ref|YP_001929665.1| putative ATP-dependent Clp protease proteolytic subunit
           [Porphyromonas gingivalis ATCC 33277]
 gi|188595093|dbj|BAG34068.1| putative ATP-dependent Clp protease proteolytic subunit
           [Porphyromonas gingivalis ATCC 33277]
          Length = 222

 Score =  244 bits (623), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 91/188 (48%), Positives = 136/188 (72%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  QI+D+ A +I AQLL+L++ +P K+IS+Y+
Sbjct: 32  PTIIEERQLNVAQMDVFSRLMMDRIIFLGTQIDDYTANVIQAQLLYLDSADPGKDISIYL 91

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V AG  IYDTMQ+I   ++T C G AASM S+LL AG KG RFALP++R+++HQ
Sbjct: 92  NSPGGSVYAGYGIYDTMQYIGCDVATICTGMAASMASVLLVAGTKGKRFALPHSRVMIHQ 151

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASD+E  A++I+++K+ L  I   + GK  ++VEK  DRD+ M+A EA ++G
Sbjct: 152 PLGGMQGQASDLEIAAREILRVKKELYTIISSHSGKPVKQVEKDSDRDYWMTAPEALEYG 211

Query: 200 VVDKVLMS 207
           ++DK+L  
Sbjct: 212 MIDKILEK 219


>gi|163753152|ref|ZP_02160276.1| ATP-dependent Clp protease proteolytic subunit 2 [Kordia algicida
           OT-1]
 gi|161326884|gb|EDP98209.1| ATP-dependent Clp protease proteolytic subunit 2 [Kordia algicida
           OT-1]
          Length = 230

 Score =  244 bits (623), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 90/210 (42%), Positives = 142/210 (67%), Gaps = 3/210 (1%)

Query: 1   MSFEGCAKKDSEDVF---LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMAT 57
           M ++    + S   F   +G+ P ++E+        D++SRL+ +RI+F+   I+D +A 
Sbjct: 20  MYYDKIVSRMSPSAFSNPVGMTPYIIEERQMNVAQMDVFSRLMMDRIIFLGTGIDDQVAN 79

Query: 58  LICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSL 117
           ++ AQLLF+E+ +  K+I +YINSPGG V AG+ IYDTMQFIKP ++T C G AASMG++
Sbjct: 80  IVQAQLLFMESVDSSKDIQIYINSPGGSVYAGLGIYDTMQFIKPDVATICTGMAASMGAV 139

Query: 118 LLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTY 177
           LL AG+ G R  L ++R+++HQP GG  GQASDIE  A++I+ +K  L +I  K+ G+ Y
Sbjct: 140 LLCAGQAGKRSGLTHSRVMIHQPLGGAQGQASDIEITAREILILKEELYKIISKHSGQPY 199

Query: 178 EEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           E++ +  DRD+ M A  A ++G++D++L+ 
Sbjct: 200 EKIYEDSDRDYWMKADRAKEYGMIDEILVR 229


>gi|256420340|ref|YP_003120993.1| endopeptidase Clp [Chitinophaga pinensis DSM 2588]
 gi|256035248|gb|ACU58792.1| Endopeptidase Clp [Chitinophaga pinensis DSM 2588]
          Length = 234

 Score =  244 bits (623), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 92/213 (43%), Positives = 138/213 (64%)

Query: 4   EGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQL 63
                  +      L P ++E+        D++SRL+ +RI+F+   + D++A +I AQL
Sbjct: 19  SLVVDSYTRHQINALTPNIIEERPMNMAIMDVFSRLMMDRIIFMGDPVNDYVANIITAQL 78

Query: 64  LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           LFLE+ +  ++I +YINSPGG V AG+ IYDTMQ I P ++T C G AAS G++LL AG 
Sbjct: 79  LFLESTDRTRDIQMYINSPGGSVYAGLGIYDTMQIIAPDVATICTGMAASFGAVLLVAGT 138

Query: 124 KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
           KG R AL +AR+++HQP GG  GQ SDIE  A++ VK+K+ LNEI   +CG+  ++VEK 
Sbjct: 139 KGKRTALKHARVMIHQPHGGAEGQTSDIEITAREFVKLKKELNEIIATHCGQPVKKVEKD 198

Query: 184 LDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
            DRD+ M+A EA ++G++D VL      ++++ 
Sbjct: 199 SDRDYWMTADEAKEYGIIDDVLTRNPRKQQENN 231


>gi|312218146|emb|CBX98092.1| similar to ATP-dependent clp protease proteolytic subunit
           [Leptosphaeria maculans]
          Length = 206

 Score =  244 bits (622), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 107/201 (53%), Positives = 153/201 (76%), Gaps = 2/201 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            +P V E T  G ++ DI+SRLL+ERI+ + G+++D M+    AQLLFLEA+NP+K IS+
Sbjct: 4   PIPYVTETTGGGWKTSDIFSRLLQERIICLNGEVDDFMSANCVAQLLFLEADNPEKPISM 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG+AIYDTM +I+ P+ST CMG AASMGSLLL+ G +G R+ LP+AR+++
Sbjct: 64  YINSPGGSVSAGLAIYDTMNYIRSPVSTICMGIAASMGSLLLAGGAEGHRYILPHARVMI 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKN-CGK-TYEEVEKTLDRDHIMSASEA 195
           HQPSGG+ G+ASDI  HA++I++I+ +LN+IY  +   K T EE+EK ++RD+ M A EA
Sbjct: 124 HQPSGGYRGKASDIADHAKEILRIRDKLNKIYQSHVTKKRTLEEIEKYMERDYFMDAQEA 183

Query: 196 CDWGVVDKVLMSRIDIEEKSK 216
            D+G+VDK+L  R    ++ +
Sbjct: 184 VDFGIVDKILEKREAPSKEGE 204


>gi|256820835|ref|YP_003142114.1| Endopeptidase Clp [Capnocytophaga ochracea DSM 7271]
 gi|256582418|gb|ACU93553.1| Endopeptidase Clp [Capnocytophaga ochracea DSM 7271]
          Length = 219

 Score =  244 bits (622), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 87/205 (42%), Positives = 137/205 (66%)

Query: 4   EGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQL 63
            G      + +   + P ++E+        D++SRL+ +RI+F+   + D +A ++ AQL
Sbjct: 15  HGVNSLYYDKIIGSMTPYIMEERQLNVAQMDVFSRLMMDRIIFLGTDVNDQVANIVTAQL 74

Query: 64  LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           LFLE+ +  K+I +YINSPGG V AG+ IYDTMQFIKP ++T C G AASM ++LL AG 
Sbjct: 75  LFLESVDSAKDIQIYINSPGGSVYAGLGIYDTMQFIKPDVATICTGIAASMAAVLLCAGT 134

Query: 124 KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
           +G R ALP++R+++HQPSGG  G ASD+E + ++++K+K  L EI  K+  + + +V K 
Sbjct: 135 EGKRSALPHSRVMIHQPSGGAQGVASDMEINLKEMLKLKNELYEIIAKHSKQPFAKVYKD 194

Query: 184 LDRDHIMSASEACDWGVVDKVLMSR 208
            +RD+ M A EA ++G++D+VL  +
Sbjct: 195 SERDYWMIAREAKEYGMIDEVLERK 219


>gi|254431764|ref|ZP_05045467.1| Clp protease [Cyanobium sp. PCC 7001]
 gi|197626217|gb|EDY38776.1| Clp protease [Cyanobium sp. PCC 7001]
          Length = 200

 Score =  244 bits (622), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 93/193 (48%), Positives = 134/193 (69%), Gaps = 2/193 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP  +  +   ER  DIY+RL  ERI+F+  ++ D +A  + AQ+L+L++E+  K I LY
Sbjct: 8   VPYRLPGSQY-ERWVDIYTRLGVERILFMGSEVNDAVANALVAQMLYLDSEDSSKPIYLY 66

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDTMQ++K  + T C+G AASMG+ LL AG KG R ALP++RI++H
Sbjct: 67  INSPGGSVTAGLAIYDTMQYVKSDVVTICVGLAASMGAFLLGAGTKGKRLALPHSRIMIH 126

Query: 139 QPSGGF-SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP GG    QASDI   A++I++IK  LN       G+ +E++EK  DRD+ +SA+EA D
Sbjct: 127 QPLGGTSQRQASDIAIEAKEILRIKDMLNHSMADMTGQPFEKIEKDTDRDYFLSAAEAKD 186

Query: 198 WGVVDKVLMSRID 210
           +G++D+V+    +
Sbjct: 187 YGLIDRVIAHPSE 199


>gi|317970581|ref|ZP_07971971.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           CB0205]
          Length = 200

 Score =  244 bits (622), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 91/193 (47%), Positives = 133/193 (68%), Gaps = 2/193 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP  +  +   ER  DIY+RL  ERI+F+  ++ D +A  + AQ+L+L++++  K I LY
Sbjct: 8   VPYRLPGSQY-ERWVDIYTRLGVERILFLGSEVNDAIANSLVAQMLYLDSDDNSKPIYLY 66

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDT+Q++K  + T C+G AASMG+ LL AG KG R ALP++RI++H
Sbjct: 67  INSPGGSVTAGLAIYDTIQYVKSDVVTICVGLAASMGAFLLGAGTKGKRLALPHSRIMIH 126

Query: 139 QPSGGF-SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP GG    QASDIE  A++I+++K  LN       G+  E++EK  DRD+ MSA EA +
Sbjct: 127 QPLGGTSQRQASDIEIEAREILRMKDMLNNSMAGMTGQPVEKIEKDTDRDYFMSAEEAMN 186

Query: 198 WGVVDKVLMSRID 210
           +G++D+V+    +
Sbjct: 187 YGLIDRVIAHPNE 199


>gi|309791159|ref|ZP_07685691.1| endopeptidase Clp [Oscillochloris trichoides DG6]
 gi|308226721|gb|EFO80417.1| endopeptidase Clp [Oscillochloris trichoides DG6]
          Length = 198

 Score =  244 bits (622), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 89/189 (47%), Positives = 134/189 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            +P ++E+T RGERS+DI+SRLL+ER++ +   I+D MA ++ AQLL L+ ++P+++I L
Sbjct: 5   PIPTIIERTARGERSWDIFSRLLQERVIMIGTPIDDDMAAVVVAQLLVLQHQDPERDIWL 64

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGVV AG+AIYDTMQ I P + T C+G+AASM ++LL  G KG RFALPNA I  
Sbjct: 65  YINSPGGVVRAGLAIYDTMQLISPDVCTVCVGRAASMATVLLCGGAKGKRFALPNATIHS 124

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           H   GG  G A D+E    ++++++R L EI  ++ G+  E +E+   RD  ++A +A +
Sbjct: 125 HPAGGGAEGYAPDVEIAVNEMLRLQRMLREIMAEHSGQPIERIEQDFSRDAYLTAQQAIE 184

Query: 198 WGVVDKVLM 206
           +G++D +L 
Sbjct: 185 YGLIDSILE 193


>gi|169351385|ref|ZP_02868323.1| hypothetical protein CLOSPI_02165 [Clostridium spiroforme DSM 1552]
 gi|169291607|gb|EDS73740.1| hypothetical protein CLOSPI_02165 [Clostridium spiroforme DSM 1552]
          Length = 190

 Score =  244 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 95/190 (50%), Positives = 137/190 (72%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+E+TN+ E +YDIYSRLL++RI+ +TG I+D MA+ I  QLL+LE+ +   +I
Sbjct: 1   MHLIPTVIEKTNQREYAYDIYSRLLEDRIILLTGTIDDKMASSIVGQLLYLESIDNSADI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG + AGMAIYDTM FIK  +ST  +G AASM + LLSAG KG R +LPN+ I
Sbjct: 61  YMYINSPGGSINAGMAIYDTMNFIKCDVSTIVIGMAASMAAFLLSAGTKGKRCSLPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP G F GQASDIE  A+ I+K K +LN++  KN  +   ++    DRD+ +  +EA
Sbjct: 121 MIHQPLGAFEGQASDIEISAKRILKQKEKLNKLLSKNTNQPLSKIITDTDRDYFLEPNEA 180

Query: 196 CDWGVVDKVL 205
             +G++D+++
Sbjct: 181 LVYGIIDEII 190


>gi|330719338|ref|ZP_08313938.1| ATP-dependent Clp protease proteolytic subunit [Leuconostoc fallax
           KCTC 3537]
          Length = 202

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 103/197 (52%), Positives = 140/197 (71%), Gaps = 2/197 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           + P V+EQT  G  SYD+ SRLLK+RI+ V G++ED MAT I AQLLFLEA++  KEIS+
Sbjct: 1   MWPGVIEQTANGRESYDLPSRLLKDRIILVQGEVEDQMATSIVAQLLFLEAQDSDKEISM 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+AI DTM+FIK P++T  MG AASMG+++ S+G KG RF LPNA  L+
Sbjct: 61  YINSPGGSVTAGLAIVDTMRFIKAPVTTIVMGLAASMGTIIASSGTKGKRFMLPNAEYLI 120

Query: 138 HQPSGGFSG--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP GG +G  Q +D+   AQ + K + RLN+I  +N G+  E++    +RD+ MSA E 
Sbjct: 121 HQPMGGAAGGTQQTDMAIIAQQLTKTRERLNKILSENSGQPLEQIRNDTERDYWMSAEET 180

Query: 196 CDWGVVDKVLMSRIDIE 212
            D+G++D +L    ++ 
Sbjct: 181 LDYGLIDGILTQSGEMP 197


>gi|77455725|gb|ABA86601.1| chloroplast clp protease P [Isochrysis galbana]
          Length = 277

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 91/195 (46%), Positives = 135/195 (69%), Gaps = 4/195 (2%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            +PMV      G+   D+ SRLLK+RI+ +   ++D +A L+ AQLL+L  E+ +K+I++
Sbjct: 77  PLPMV----GSGDDKMDVMSRLLKDRILLLGQGVDDEVANLLVAQLLYLANEDARKDITM 132

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AGMAI+DTMQ++   ++T C G AASMG+ LL AG+KG R +LPN+RI++
Sbjct: 133 YINSPGGSVSAGMAIFDTMQYVPCDLNTVCFGTAASMGAFLLGAGQKGKRRSLPNSRIMI 192

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+ I+  L E      G+  +++E   DRD  M+  EA D
Sbjct: 193 HQPLGGAQGQAADIEIQAKEILFIRALLCEYIADYTGQPVDKIEDDCDRDFFMTPEEAKD 252

Query: 198 WGVVDKVLMSRIDIE 212
           +G++D+VL S++ I 
Sbjct: 253 YGIIDEVLASKVRIP 267


>gi|315224014|ref|ZP_07865855.1| ATP-dependent Clp protease proteolytic subunit [Capnocytophaga
           ochracea F0287]
 gi|314945985|gb|EFS97993.1| ATP-dependent Clp protease proteolytic subunit [Capnocytophaga
           ochracea F0287]
          Length = 219

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 87/205 (42%), Positives = 137/205 (66%)

Query: 4   EGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQL 63
            G      + +   + P ++E+        D++SRL+ +RI+F+   + D +A ++ AQL
Sbjct: 15  HGVNSLYYDKIIDSMTPYIMEERQLNVAQMDVFSRLMMDRIIFLGTDVNDQVANIVTAQL 74

Query: 64  LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           LFLE+ +  K+I +YINSPGG V AG+ IYDTMQFIKP ++T C G AASM ++LL AG 
Sbjct: 75  LFLESVDSAKDIQIYINSPGGSVYAGLGIYDTMQFIKPDVATICTGIAASMAAVLLCAGT 134

Query: 124 KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
           +G R ALP++R+++HQPSGG  G ASD+E + ++++K+K  L EI  K+  + + +V K 
Sbjct: 135 EGKRSALPHSRVMIHQPSGGAQGVASDMEINLKEMLKLKNELYEIIAKHSKQPFAKVYKD 194

Query: 184 LDRDHIMSASEACDWGVVDKVLMSR 208
            +RD+ M A EA ++G++D+VL  +
Sbjct: 195 SERDYWMIAREAKEYGMIDEVLERK 219


>gi|312081179|ref|XP_003142917.1| hypothetical protein LOAG_07336 [Loa loa]
 gi|307761922|gb|EFO21156.1| hypothetical protein LOAG_07336 [Loa loa]
          Length = 218

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 109/193 (56%), Positives = 144/193 (74%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +PMVV+Q  R ER YDIYSRLLK+RIV V   I D +A  + AQLLFL+ E+ +  I++Y
Sbjct: 26  IPMVVDQDGRVERVYDIYSRLLKDRIVCVMTPINDQVAASVIAQLLFLQGESAKSTINMY 85

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           I  PGG VTAG+ IYDTMQ+I  P++T+C+GQAASMGSLLLSAG KGMR +LPNARI++H
Sbjct: 86  IMCPGGSVTAGLGIYDTMQYISAPVATWCIGQAASMGSLLLSAGAKGMRTSLPNARIMVH 145

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  GQASDI   A++I ++K RLN+IY  + G+  + +E+ LDRD  MS  EA  +
Sbjct: 146 QPSGGAEGQASDILIRAEEIGRLKTRLNKIYAIHTGQDIKIIEEALDRDRYMSPEEAKQF 205

Query: 199 GVVDKVLMSRIDI 211
           G++D++  S  D+
Sbjct: 206 GIIDQIEASAFDL 218


>gi|320103932|ref|YP_004179523.1| ATP-dependent Clp protease proteolytic subunit ClpP [Isosphaera
           pallida ATCC 43644]
 gi|319751214|gb|ADV62974.1| ATP-dependent Clp protease proteolytic subunit ClpP [Isosphaera
           pallida ATCC 43644]
          Length = 252

 Score =  243 bits (620), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 82/178 (46%), Positives = 125/178 (70%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           +R   +   LL+ RI+F+ G I++ +A  +  Q L+L+ EN  + IS YINSPGG V + 
Sbjct: 35  QRQMTLSDLLLENRIIFLEGPIDNVIANHLIKQFLYLQFENRTQGISFYINSPGGSVYST 94

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
           +A+YDTMQF+  PI+T+C+G AAS  ++LL+ G KG RF+LP+++I++HQPSG   GQ S
Sbjct: 95  LAVYDTMQFVNCPIATYCIGMAASGAAVLLAGGTKGKRFSLPHSKIMIHQPSGYVGGQVS 154

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           DIE  A +I+K K+ +NEI  K+ G+ YE + K  +RD  ++A+EA ++G+VD+VL  
Sbjct: 155 DIEIQADEILKNKKLINEILAKHTGQPYERIAKDTERDRYLTAAEAKEYGLVDEVLSK 212


>gi|117927945|ref|YP_872496.1| ClpP1 peptidase. Serine peptidase. MEROPS family S14 [Acidothermus
           cellulolyticus 11B]
 gi|117648408|gb|ABK52510.1| ATP-dependent Clp protease proteolytic subunit ClpP [Acidothermus
           cellulolyticus 11B]
          Length = 221

 Score =  243 bits (620), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 87/217 (40%), Positives = 134/217 (61%), Gaps = 2/217 (0%)

Query: 1   MSFEGCAKKDSEDVFLGL--VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATL 58
           M  +    +      +G+  +P      +      D++++LL+ RI+F+   ++D +A  
Sbjct: 1   MIVDPSVARSESGSPIGVPGIPTAALPPSGASAEDDVFNKLLRNRILFLGTVVDDALANK 60

Query: 59  ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLL 118
           ICAQLL L AE+P ++I LYINSPGG V AGMAIYDTMQ+++  ++T  +G AASMG  L
Sbjct: 61  ICAQLLLLAAEDPDRDIYLYINSPGGSVDAGMAIYDTMQYVQCDVATVALGLAASMGQFL 120

Query: 119 LSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYE 178
           L AG KG R+ALP+ARI++HQP GG  G AS I   A+ ++  KR L ++  ++ G+  E
Sbjct: 121 LCAGAKGKRYALPHARIMMHQPLGGIGGTASLIAIQAEQMLYAKRTLQQLISQHTGQPIE 180

Query: 179 EVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
            +E+  DR+   SA EA ++G +D V+ S   +  ++
Sbjct: 181 RIERDSDRERWFSAEEAKEYGFIDHVVRSSRQVPTET 217


>gi|213962584|ref|ZP_03390846.1| Clp protease [Capnocytophaga sputigena Capno]
 gi|213954910|gb|EEB66230.1| Clp protease [Capnocytophaga sputigena Capno]
          Length = 219

 Score =  243 bits (620), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 86/205 (41%), Positives = 137/205 (66%)

Query: 4   EGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQL 63
            G      + +   + P ++E+        D++SRL+ +RI+F+   + D +A ++ AQL
Sbjct: 15  HGVNSLYYDKIVGSMTPYIMEERQLNVAQMDVFSRLMMDRIIFLGTDVNDQVANIVTAQL 74

Query: 64  LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           LFLE+ +  K+I +YINSPGG V AG+ +YDTMQFIKP ++T C G AASM ++LL AG 
Sbjct: 75  LFLESVDSAKDIQIYINSPGGSVYAGLGMYDTMQFIKPDVATICTGIAASMAAVLLCAGA 134

Query: 124 KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
           +G R ALP++R+++HQPSGG  G ASD+E + ++++K+K  L EI  K+  + + +V K 
Sbjct: 135 EGKRSALPHSRVMIHQPSGGAQGVASDMEINLKEMLKLKNELYEIIAKHSKQPFAKVYKD 194

Query: 184 LDRDHIMSASEACDWGVVDKVLMSR 208
            +RD+ M A EA ++G++D+VL  +
Sbjct: 195 SERDYWMIAHEAKEYGMIDEVLERK 219


>gi|271968525|ref|YP_003342721.1| endopeptidase Clp [Streptosporangium roseum DSM 43021]
 gi|270511700|gb|ACZ89978.1| Endopeptidase Clp [Streptosporangium roseum DSM 43021]
          Length = 214

 Score =  243 bits (620), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 90/209 (43%), Positives = 128/209 (61%), Gaps = 11/209 (5%)

Query: 16  LGLVPMVVEQTNRGERSYD-----------IYSRLLKERIVFVTGQIEDHMATLICAQLL 64
           +   P   + T  G  S             +Y RLL+ERI+ +  Q+ D +A  ICA+LL
Sbjct: 1   MTSPPTFYQPTGSGPESMSQPNGSFRLEDQLYQRLLRERIIVLGTQVNDEIANRICAELL 60

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
            L A++P ++I LYINSPGG VTAGMAIYD M+++   + T  MG AASMG  LL AGEK
Sbjct: 61  LLAADDPDRDIWLYINSPGGSVTAGMAIYDMMEYVPNNVCTVAMGLAASMGQFLLCAGEK 120

Query: 125 GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
           G R+ALP+ARI++HQPSGG  G A+DI   A+ ++ +K+ L E    + G+  +++E   
Sbjct: 121 GKRYALPHARIMMHQPSGGIGGTAADIAIQAEQMLYVKKTLAERIAFHTGQPLDQIEADS 180

Query: 185 DRDHIMSASEACDWGVVDKVLMSRIDIEE 213
           DRD   +A EA D+G +D+V+ S   +  
Sbjct: 181 DRDRWFTAEEAKDYGFIDQVVRSARQVPS 209


>gi|312131371|ref|YP_003998711.1| ATP-dependent clp protease proteolytic subunit clpp [Leadbetterella
           byssophila DSM 17132]
 gi|311907917|gb|ADQ18358.1| ATP-dependent Clp protease proteolytic subunit ClpP [Leadbetterella
           byssophila DSM 17132]
          Length = 225

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 85/194 (43%), Positives = 138/194 (71%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            + P ++E+      + D++SRL+ +RI+FV   I+D +A ++ AQLLFLE+ + +K+I 
Sbjct: 32  NMTPNIIEERPMRFAAIDVFSRLIMDRIIFVGTGIDDQVANIVVAQLLFLESVDAKKDIL 91

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+NSPGG V AG+ +YDTMQ+++P ++T C   AASMG++LL+ G  G R ALP+AR++
Sbjct: 92  MYLNSPGGSVYAGLGMYDTMQYVRPEVATICTSLAASMGAVLLAGGAAGKRTALPHARVM 151

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  GQ+ D+E   + I+++++ L EI  ++ GKT+EE+E+  DRD+ M A EA 
Sbjct: 152 IHQPSGGAQGQSRDMEITVKQIIELRKELYEILAQHTGKTFEEIERDSDRDYWMKAEEAK 211

Query: 197 DWGVVDKVLMSRID 210
            +G++D+VL    +
Sbjct: 212 AYGLIDEVLYRDKN 225


>gi|154494362|ref|ZP_02033682.1| hypothetical protein PARMER_03717 [Parabacteroides merdae ATCC
           43184]
 gi|154085806|gb|EDN84851.1| hypothetical protein PARMER_03717 [Parabacteroides merdae ATCC
           43184]
          Length = 221

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 94/205 (45%), Positives = 140/205 (68%), Gaps = 5/205 (2%)

Query: 8   KKDSEDVFLGLV-----PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQ 62
             ++ D ++ +      P ++E+        D++SRL+ +RI+F+  Q++D+ A +I AQ
Sbjct: 15  NSNALDSYMNITSSYISPTIIEERQLNVAQMDVFSRLMMDRIIFLGTQVDDYTANVIQAQ 74

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           LL+L++ +P K+IS+YINSPGG V AG  IYDTMQFI   +ST C G AAS  ++LL AG
Sbjct: 75  LLYLDSSDPGKDISIYINSPGGSVYAGYGIYDTMQFISSDVSTICTGMAASFAAVLLVAG 134

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
            KG R ALP++R+++HQP GG  GQASDIE  A++I+K+K+ L  I   + G+ YE+VE 
Sbjct: 135 TKGKRMALPHSRVMIHQPLGGAQGQASDIEITAREILKVKKELYTIISTHSGQPYEKVEH 194

Query: 183 TLDRDHIMSASEACDWGVVDKVLMS 207
             DRD+ M+A EA  +G++DKVL+ 
Sbjct: 195 DSDRDYWMTAEEALAYGMIDKVLVR 219


>gi|312140361|ref|YP_004007697.1| clp peptidase proteolytic subunit 1 clpp1 [Rhodococcus equi 103S]
 gi|311889700|emb|CBH49017.1| Clp peptidase proteolytic subunit 1 ClpP1 [Rhodococcus equi 103S]
          Length = 202

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 94/188 (50%), Positives = 128/188 (68%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P +   T+    S  +Y RLL+ERI+F+  Q++D +A  +CAQ+L L AE+P ++I+LYI
Sbjct: 6   PAMTSATSGLNLSDSVYERLLRERIIFLGTQVDDDIANKLCAQILLLSAEDPTRDINLYI 65

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VTAGMAIYDTMQF +  ++TF MG AASMG  LLSAG KG R+ALP+ARI++HQ
Sbjct: 66  NSPGGSVTAGMAIYDTMQFAECDVATFGMGLAASMGQFLLSAGTKGKRYALPHARIMMHQ 125

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           PS G  G ASDI   A+     KR + E+  ++ G+T E++    DRD   +A EA ++G
Sbjct: 126 PSAGIGGTASDIAIMAEQFAHTKREMAELIAEHTGQTVEQITADSDRDRWFTAKEALEYG 185

Query: 200 VVDKVLMS 207
            VD V+  
Sbjct: 186 FVDHVVTR 193


>gi|225012269|ref|ZP_03702706.1| Endopeptidase Clp [Flavobacteria bacterium MS024-2A]
 gi|225003824|gb|EEG41797.1| Endopeptidase Clp [Flavobacteria bacterium MS024-2A]
          Length = 221

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 92/204 (45%), Positives = 138/204 (67%)

Query: 4   EGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQL 63
            G      +++   + P ++E+        D++SRL+ +RI+F+   I+D++A +I AQL
Sbjct: 15  HGINSMYYDNIVSSMTPYIIEERQMNVAQMDVFSRLMMDRIMFLGTGIDDNVANIIQAQL 74

Query: 64  LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           LFL++ +  ++I +YINSPGG V AG+ IYDTMQFI P ++T C G AASMG++LL AG 
Sbjct: 75  LFLQSTDANRDIQMYINSPGGSVYAGLGIYDTMQFISPNVATICTGIAASMGAVLLCAGH 134

Query: 124 KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
           +G R ALP+AR+++HQP GG  GQASDIE   ++I+K+K  L +I  K+ G+  E+V   
Sbjct: 135 EGKRSALPHARVMIHQPLGGAQGQASDIEITTREILKLKDELYQIISKHSGQKMEKVTHD 194

Query: 184 LDRDHIMSASEACDWGVVDKVLMS 207
            DRD+ M A EA  +G+VD+VL +
Sbjct: 195 SDRDYWMKAEEAKAYGMVDEVLQN 218


>gi|256832187|ref|YP_003160914.1| Endopeptidase Clp [Jonesia denitrificans DSM 20603]
 gi|256685718|gb|ACV08611.1| Endopeptidase Clp [Jonesia denitrificans DSM 20603]
          Length = 207

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 92/173 (53%), Positives = 125/173 (72%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IY+RLLKERI+++  ++ D  A  ICAQ+L L AE+P K+I LYINSPGG +TAGMAIYD
Sbjct: 22  IYNRLLKERIIWLGSEVRDENANAICAQMLLLAAEDPDKDIYLYINSPGGSITAGMAIYD 81

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQFIKP + T  MG AASMG  LLS+G++G RFA P+AR+++HQPSGG  G A+DI  +
Sbjct: 82  TMQFIKPDVVTVAMGMAASMGQFLLSSGKRGKRFATPHARVMMHQPSGGIGGTATDIRIN 141

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           AQ I+ +K+ L E+  +  GKT E++    DRD   +A EA ++G +D ++  
Sbjct: 142 AQLILHMKKVLAELIAEQTGKTVEQINTDSDRDRWFTAQEALEYGFIDHIVEH 194


>gi|318040432|ref|ZP_07972388.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           CB0101]
          Length = 200

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 91/193 (47%), Positives = 133/193 (68%), Gaps = 2/193 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP  +  +   ER  DIY+RL  ERI+F+  ++ D +A  + AQ+L+L++E+  K I LY
Sbjct: 8   VPYRLPGSQY-ERWVDIYTRLGVERILFLGSEVNDAIANSLVAQMLYLDSEDNSKPIYLY 66

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDT+Q++K  + T C+G AASMG+ LL AG KG R ALP++RI++H
Sbjct: 67  INSPGGSVTAGLAIYDTIQYVKSDVVTICVGLAASMGAFLLGAGTKGKRLALPHSRIMIH 126

Query: 139 QPSGGF-SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP GG    QASDIE  A++I++IK  LN+      G+   ++EK  DRD+ +SA EA +
Sbjct: 127 QPLGGTSQRQASDIEIEAREILRIKDMLNQSMADMTGQELAKIEKDTDRDYFLSAEEAKN 186

Query: 198 WGVVDKVLMSRID 210
           +G++D+V+    +
Sbjct: 187 YGLIDRVIAHPSE 199


>gi|323456646|gb|EGB12512.1| hypothetical protein AURANDRAFT_70482 [Aureococcus anophagefferens]
          Length = 1031

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 88/186 (47%), Positives = 127/186 (68%), Gaps = 3/186 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V   T       D+ SRLLK+RI+ +  ++ D +A ++ AQ+L+L  E+P+ +I+L
Sbjct: 57  IMPTV---TGANGEQIDVVSRLLKDRILLLGSEVNDEVANVLVAQMLYLANEDPEGDITL 113

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AGMAIYDTMQFI   +ST C G AASMG+ LL AG KG R +LPNARI++
Sbjct: 114 YINSPGGSVSAGMAIYDTMQFIPCDVSTVCFGMAASMGAFLLGAGSKGKRKSLPNARIMI 173

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQA+DIE  A++I+  K  +N    +  G+  +++ +  DRD  M  +EA D
Sbjct: 174 HQPLGGAQGQAADIEIQAKEILFTKACINTYMSEYTGQPIDKLAEDTDRDFYMMPTEAQD 233

Query: 198 WGVVDK 203
           +G++D+
Sbjct: 234 YGLIDE 239


>gi|307250531|ref|ZP_07532475.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306857424|gb|EFM89536.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 172

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 103/169 (60%), Positives = 134/169 (79%)

Query: 40  LKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           +KERI+F+TGQ+EDHMA LI AQ+LFLEAE+P+K+I LYINSPGGVVTAG+AIYDTM FI
Sbjct: 1   MKERIIFLTGQVEDHMANLIVAQMLFLEAEDPEKDIYLYINSPGGVVTAGLAIYDTMNFI 60

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
           KP ++T C GQA SMG+ LLS G KG RFALPNAR+++HQP GG  GQA+DI+  AQ+I+
Sbjct: 61  KPDVATLCTGQACSMGAFLLSGGAKGKRFALPNARVMIHQPLGGARGQATDIQIQAQEIL 120

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           K+K  L     ++ G+ +E+V    +RD+ MSA EA ++G++DKVL  R
Sbjct: 121 KLKEMLTRKMAEHSGQPFEKVAADTERDNFMSAVEAMEYGLIDKVLTHR 169


>gi|84494299|ref|ZP_00993418.1| ATP-dependent Clp protease proteolytic subunit 1 [Janibacter sp.
           HTCC2649]
 gi|84383792|gb|EAP99672.1| ATP-dependent Clp protease proteolytic subunit 1 [Janibacter sp.
           HTCC2649]
          Length = 206

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 93/176 (52%), Positives = 128/176 (72%), Gaps = 1/176 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IY+RLLKERI+F+  ++ D  A  ICAQ+L L AE+ +K+I LYINSPGG VTAGMAI+D
Sbjct: 21  IYNRLLKERIIFLGSEVRDDNANAICAQMLLLAAEDSEKDIWLYINSPGGSVTAGMAIFD 80

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ++   ++T  MG AASMG  LLSAG  G R A P+AR+++HQPSGG  G ASDI+  
Sbjct: 81  TMQWVPNDVATVAMGMAASMGQFLLSAGTPGKRHATPHARVMMHQPSGGIGGTASDIKIQ 140

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           A+ ++ IK+++ E+  ++ G+T E++E+  DRD   +ASEA ++G VD V  SR D
Sbjct: 141 AEQLLHIKKQMAELIAEHTGQTPEQIEEDSDRDRWFTASEAKEYGFVDHVF-SRAD 195


>gi|15677178|ref|NP_274331.1| ATP-dependent Clp protease, proteolytic subunit [Neisseria
           meningitidis MC58]
 gi|7226553|gb|AAF41687.1| ATP-dependent Clp protease, proteolytic subunit [Neisseria
           meningitidis MC58]
          Length = 176

 Score =  242 bits (618), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 104/174 (59%), Positives = 137/174 (78%), Gaps = 2/174 (1%)

Query: 40  LKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           +KERIVF+ G + D  A L+ AQLLFLE+ENP K+I  YINSPGG VTAGM+IYDTM FI
Sbjct: 1   MKERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFFYINSPGGSVTAGMSIYDTMNFI 60

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP--SGGFSGQASDIERHAQD 157
           KP +ST C+GQAASMG+ LLSAGEKG RFALPN+RI++HQP  SGG  GQASDIE HA++
Sbjct: 61  KPDVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMIHQPLISGGLGGQASDIEIHARE 120

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           ++KIK +LN +  K+C +   ++E+  DRD+ MSA EA ++G++D++L +R  +
Sbjct: 121 LLKIKEKLNRLMAKHCDRDLADLERDTDRDNFMSAEEAKEYGLIDQILENRASL 174


>gi|302832604|ref|XP_002947866.1| hypothetical protein VOLCADRAFT_103638 [Volvox carteri f.
           nagariensis]
 gi|300266668|gb|EFJ50854.1| hypothetical protein VOLCADRAFT_103638 [Volvox carteri f.
           nagariensis]
          Length = 347

 Score =  242 bits (618), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 84/186 (45%), Positives = 125/186 (67%), Gaps = 2/186 (1%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P+V  +T   E   D +  LL++RIVF+ G++ED  A  + +QLL L++++P K+I ++I
Sbjct: 58  PIVAPRTA--EMQGDPFGLLLRQRIVFLGGEVEDFGADALISQLLLLDSQDPTKDIKMFI 115

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VTAGM IYD M   +  + T+C G AASMG+ LL AG++G R ++PN+RI++HQ
Sbjct: 116 NSPGGSVTAGMGIYDAMMLCRADVHTYCFGLAASMGAFLLGAGKRGKRHSMPNSRIMIHQ 175

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG SGQA DIE  A++I+  K  LN I     G+   ++E+  DRD  MS  EA ++G
Sbjct: 176 PLGGASGQAVDIEIQAKEIMYHKANLNRIMADYTGQPLAKIEEDTDRDRYMSPLEAKEYG 235

Query: 200 VVDKVL 205
           ++D ++
Sbjct: 236 IIDHIV 241


>gi|60683331|ref|YP_213475.1| ATP-dependent Clp protease proteolytic subunit [Bacteroides
           fragilis NCTC 9343]
 gi|81313617|sp|Q5L8L6|CLPP_BACFN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|60494765|emb|CAH09571.1| putative ATP-dependent CLP protease proteolytic subunit
           [Bacteroides fragilis NCTC 9343]
          Length = 207

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 90/189 (47%), Positives = 135/189 (71%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  QI+D+ A  + AQLL+L++ +P K+IS+YI
Sbjct: 19  PYILEERQLNVTQLDVFSRLMMDRIIFLGTQIDDYTANTLQAQLLYLDSVDPGKDISIYI 78

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V AG+ IYDTMQFI   ++T C G AASM S+LL AG KG R ALP++R+++HQ
Sbjct: 79  NSPGGSVYAGLGIYDTMQFISSDVATICTGMAASMASVLLVAGAKGKRSALPHSRVMIHQ 138

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I K+K+ L  I   + G ++++V    DRD+ M+A EA ++G
Sbjct: 139 PMGGAQGQASDIEITAREIQKLKKELYTIIADHSGTSFDKVWADSDRDYWMTAQEAKEYG 198

Query: 200 VVDKVLMSR 208
           ++D+VL+ +
Sbjct: 199 MIDEVLIKK 207


>gi|298346553|ref|YP_003719240.1| endopeptidase Clp [Mobiluncus curtisii ATCC 43063]
 gi|304389729|ref|ZP_07371688.1| ATP-dependent Clp protease proteolytic subunit [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|315655110|ref|ZP_07908012.1| ATP-dependent Clp protease, protease subunit [Mobiluncus curtisii
           ATCC 51333]
 gi|315657032|ref|ZP_07909917.1| ATP-dependent Clp protease, protease subunit [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
 gi|298236614|gb|ADI67746.1| endopeptidase Clp [Mobiluncus curtisii ATCC 43063]
 gi|304326905|gb|EFL94144.1| ATP-dependent Clp protease proteolytic subunit [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|315490591|gb|EFU80214.1| ATP-dependent Clp protease, protease subunit [Mobiluncus curtisii
           ATCC 51333]
 gi|315492424|gb|EFU82030.1| ATP-dependent Clp protease, protease subunit [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
          Length = 202

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 97/196 (49%), Positives = 129/196 (65%), Gaps = 6/196 (3%)

Query: 27  NRGERSYD------IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           NR E + D      IY RLLKERI+++  ++    A  ICAQ+L L AE+P  +I LYIN
Sbjct: 5   NRDEDTPDVPTGGFIYKRLLKERIIWLGDEVSQENANAICAQMLLLAAEDPDSDIYLYIN 64

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGG VTAGMAIYDTMQ++KP + T  MG AASMG  LL+AG KG RFA P+ARIL+HQP
Sbjct: 65  SPGGSVTAGMAIYDTMQYVKPDVVTVAMGMAASMGQFLLTAGTKGKRFATPHARILMHQP 124

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            GG  G AS++  +A  I+ +K  L +I  +  G T EE+ +  DRDH  +A EA ++G 
Sbjct: 125 LGGVQGTASEVRINADLILAMKHELAQITAERTGHTLEEITRDADRDHWFTAQEALEYGF 184

Query: 201 VDKVLMSRIDIEEKSK 216
           +D V+ S   ++  +K
Sbjct: 185 IDAVVESAAAVQSSNK 200


>gi|78185116|ref|YP_377551.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           CC9902]
 gi|124013823|sp|Q3AVC3|CLPP3_SYNS9 RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
           AltName: Full=Endopeptidase Clp 3
 gi|78169410|gb|ABB26507.1| ATP-dependent Clp protease proteolytic subunit ClpP [Synechococcus
           sp. CC9902]
          Length = 200

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 92/193 (47%), Positives = 135/193 (69%), Gaps = 2/193 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP  +  +   ER  DIY+RL  ERI+F+  ++ D +A  + AQ+L+L++E+  K I LY
Sbjct: 8   VPYRLPGSQM-ERWVDIYTRLGVERILFLGSEVNDGIANSLVAQMLYLDSEDSSKPIYLY 66

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDT+Q++K  + T C+G AASMG+ LL+AG KG R ALP++RI++H
Sbjct: 67  INSPGGSVTAGLAIYDTIQYVKSEVVTICVGLAASMGAFLLAAGTKGKRVALPHSRIMIH 126

Query: 139 QPSGGF-SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP GG    QASDIE  A++I+++K  LN       G+T+E++EK  DRD+ +SA EA  
Sbjct: 127 QPLGGTSRRQASDIEIEAREILRMKDMLNHSLADMSGQTFEKIEKDTDRDYFLSAEEAMA 186

Query: 198 WGVVDKVLMSRID 210
           +G++D+V+    +
Sbjct: 187 YGLIDRVISHPTE 199


>gi|88809170|ref|ZP_01124679.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           WH 7805]
 gi|88787112|gb|EAR18270.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           WH 7805]
          Length = 200

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 90/193 (46%), Positives = 136/193 (70%), Gaps = 2/193 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP  +  +   ER  DIY+RL  ERI+F+  ++ D +A  + AQ+L+L++E+  K I LY
Sbjct: 8   VPYRLPGSQM-ERWVDIYTRLGVERILFLGSEVNDAVANSLVAQMLYLDSEDSGKPIYLY 66

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDT+Q++K  + T C+G AASMG+ LL+AG KG R ALP++RI++H
Sbjct: 67  INSPGGSVTAGLAIYDTIQYVKSDVVTICVGLAASMGAFLLAAGTKGKRLALPHSRIMIH 126

Query: 139 QP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP  G    QASDIE  A++I+++K  LN    +  G+++E++EK  DRD+ +S+ EA D
Sbjct: 127 QPLGGTAQRQASDIEIEAREILRMKEMLNRSMAEMSGQSFEKIEKDTDRDYFLSSQEAMD 186

Query: 198 WGVVDKVLMSRID 210
           +G++D+V+    +
Sbjct: 187 YGLIDRVIAHPNE 199


>gi|227503044|ref|ZP_03933093.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           accolens ATCC 49725]
 gi|306836723|ref|ZP_07469686.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           accolens ATCC 49726]
 gi|227076105|gb|EEI14068.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           accolens ATCC 49725]
 gi|304567401|gb|EFM43003.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           accolens ATCC 49726]
          Length = 203

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 91/173 (52%), Positives = 126/173 (72%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL ERI+F+  Q++D +A  +CAQ+L L AE+P ++ISLYINSPGG VTAGMAIYD
Sbjct: 24  VYERLLHERIIFLGTQVDDEIANKLCAQILLLSAEDPTRDISLYINSPGGSVTAGMAIYD 83

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM++    IST+ MG AASMG  LLS G KG R+ALP+ARI++HQPS G  G A+DI   
Sbjct: 84  TMKYSPCDISTYGMGLAASMGQFLLSGGTKGKRYALPHARIMMHQPSAGVGGTAADIAIQ 143

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+   + KR + E+  ++ G+T+E++ K  DRD  M+A +A ++G+VD V+ S
Sbjct: 144 AEQFAQTKREMAELIAEHTGQTFEQITKDSDRDRWMTAQQAKEYGIVDHVIES 196


>gi|325286841|ref|YP_004262631.1| ATP-dependent Clp protease proteolytic subunit [Cellulophaga lytica
           DSM 7489]
 gi|324322295|gb|ADY29760.1| ATP-dependent Clp protease proteolytic subunit [Cellulophaga lytica
           DSM 7489]
          Length = 226

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 91/210 (43%), Positives = 138/210 (65%), Gaps = 3/210 (1%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           M ++             + P ++E+      + D++SRL+ +RI+F+   I D +A ++ 
Sbjct: 20  MYYDKILSTM---YPSNMTPNIIEERQLNAIAMDVFSRLMMDRIIFLGTGINDQVANIVQ 76

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE+ +  K+I +YINSPGG V AG+ IYDTMQFIKP ++T C G AASMG++LL 
Sbjct: 77  AQLLFLESADASKDIQIYINSPGGSVYAGLGIYDTMQFIKPDVATICTGMAASMGAVLLC 136

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AGEKG R  L ++R+++HQP GG  GQASDIE  A++I+K+K  L  I   + G+T+++V
Sbjct: 137 AGEKGKRSGLTHSRVMIHQPLGGAQGQASDIEITAREILKLKDELYNIIATHSGQTFDKV 196

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRID 210
               DRD+ M A EA  +G++D++L+   +
Sbjct: 197 SNDSDRDYWMKADEAKKYGMIDEILVREKN 226


>gi|53715362|ref|YP_101354.1| ATP-dependent Clp protease proteolytic subunit [Bacteroides
           fragilis YCH46]
 gi|253567251|ref|ZP_04844701.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacteroides sp.
           3_2_5]
 gi|255011711|ref|ZP_05283837.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacteroides
           fragilis 3_1_12]
 gi|265767849|ref|ZP_06095381.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacteroides
           sp. 2_1_16]
 gi|313149546|ref|ZP_07811739.1| endopeptidase Clp [Bacteroides fragilis 3_1_12]
 gi|67460245|sp|Q64NW2|CLPP_BACFR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|52218227|dbj|BAD50820.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacteroides
           fragilis YCH46]
 gi|251944082|gb|EES84601.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacteroides sp.
           3_2_5]
 gi|263252521|gb|EEZ24049.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacteroides
           sp. 2_1_16]
 gi|301164820|emb|CBW24380.1| putative ATP-dependent CLP protease proteolytic subunit
           [Bacteroides fragilis 638R]
 gi|313138313|gb|EFR55673.1| endopeptidase Clp [Bacteroides fragilis 3_1_12]
          Length = 220

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 90/189 (47%), Positives = 135/189 (71%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  QI+D+ A  + AQLL+L++ +P K+IS+YI
Sbjct: 32  PYILEERQLNVTQLDVFSRLMMDRIIFLGTQIDDYTANTLQAQLLYLDSVDPGKDISIYI 91

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V AG+ IYDTMQFI   ++T C G AASM S+LL AG KG R ALP++R+++HQ
Sbjct: 92  NSPGGSVYAGLGIYDTMQFISSDVATICTGMAASMASVLLVAGAKGKRSALPHSRVMIHQ 151

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I K+K+ L  I   + G ++++V    DRD+ M+A EA ++G
Sbjct: 152 PMGGAQGQASDIEITAREIQKLKKELYTIIADHSGTSFDKVWADSDRDYWMTAQEAKEYG 211

Query: 200 VVDKVLMSR 208
           ++D+VL+ +
Sbjct: 212 MIDEVLIKK 220


>gi|319935305|ref|ZP_08009743.1| ATP-dependent Clp protease proteolytic subunit [Coprobacillus sp.
           29_1]
 gi|319809713|gb|EFW06114.1| ATP-dependent Clp protease proteolytic subunit [Coprobacillus sp.
           29_1]
          Length = 194

 Score =  242 bits (617), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 86/192 (44%), Positives = 137/192 (71%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P V+ +    E +YDI+SRLL++RI+ + G+I D +A+ I +QLL+LE+ +   +I
Sbjct: 1   MHFIPTVILKKQSKEYAYDIFSRLLEDRIIMLCGEINDEVASSIVSQLLYLESLDSSADI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG V+AG+AIYDTM F+K  +ST  +G +ASMG+ LL+AG+KG R AL N+ I
Sbjct: 61  YMYINSPGGSVSAGLAIYDTMNFVKCDVSTISIGLSASMGAFLLAAGQKGKRCALQNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG +GQASDIE   + I++ K +LN++  +   +   +++K  DRD+ M+A +A
Sbjct: 121 MIHQPLGGTNGQASDIEITTKHILRQKEKLNKLLSEMTSQPLRKIKKDTDRDYFMNAYDA 180

Query: 196 CDWGVVDKVLMS 207
            ++G++D+VL  
Sbjct: 181 LEYGLIDEVLTK 192


>gi|296423577|ref|XP_002841330.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637567|emb|CAZ85521.1| unnamed protein product [Tuber melanosporum]
          Length = 242

 Score =  242 bits (617), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 104/201 (51%), Positives = 144/201 (71%), Gaps = 2/201 (0%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
           +    P V E    G  SYDI+SRLLKERI+ + G + D ++ ++ AQLLFLEAENP+K+
Sbjct: 38  YYTPTPFVHESVGGGWHSYDIFSRLLKERIICLNGPVHDGISAVVVAQLLFLEAENPEKQ 97

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I+LYINSPGG VTAG+AIYDTM +I+ P+ST C+GQAASMGSLLL  G KG R+ALP+A 
Sbjct: 98  INLYINSPGGSVTAGLAIYDTMNYIQAPVSTICIGQAASMGSLLLCGGTKGKRYALPHAS 157

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT--YEEVEKTLDRDHIMSA 192
           +++HQPS   +   SDI  HA++I++++ RLN IY K+  K     ++EK ++RD  M A
Sbjct: 158 VMVHQPSILMTKGNSDIAIHAKEILRVRERLNIIYQKHLTKPHTLAQIEKIMERDLFMGA 217

Query: 193 SEACDWGVVDKVLMSRIDIEE 213
            EA + G+VD++L++R    E
Sbjct: 218 EEAKEMGLVDEILVARKKSSE 238


>gi|315604696|ref|ZP_07879759.1| ATP-dependent Clp protease proteolytic subunit [Actinomyces sp.
           oral taxon 180 str. F0310]
 gi|315313708|gb|EFU61762.1| ATP-dependent Clp protease proteolytic subunit [Actinomyces sp.
           oral taxon 180 str. F0310]
          Length = 204

 Score =  242 bits (617), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 93/182 (51%), Positives = 125/182 (68%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           ++ RLLKERI+++ G++ D  A  ICAQLL L AE+P ++I LYINSPGG VTAGMAIYD
Sbjct: 21  VFQRLLKERIIWLGGEVRDENANTICAQLLLLAAEDPDRDIYLYINSPGGSVTAGMAIYD 80

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ++KP + T  MG AASM   LL+AG  G R+  P+ R+LLHQP GG  G A++I  +
Sbjct: 81  TMQYVKPDVVTVGMGMAASMAQFLLTAGAPGKRYITPHTRVLLHQPLGGAGGSATEIRIN 140

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           A  I+ +K+ L  I     GKT E+VE   DRDH  SA+EA ++G VD+V+ S  +I  +
Sbjct: 141 ADLILGMKKELASITAARTGKTVEQVEADGDRDHWFSAAEALEYGFVDRVINSPDEIGTR 200

Query: 215 SK 216
            +
Sbjct: 201 GE 202


>gi|256824760|ref|YP_003148720.1| ATP-dependent Clp protease proteolytic subunit ClpP [Kytococcus
           sedentarius DSM 20547]
 gi|256688153|gb|ACV05955.1| ATP-dependent Clp protease proteolytic subunit ClpP [Kytococcus
           sedentarius DSM 20547]
          Length = 225

 Score =  242 bits (617), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 93/182 (51%), Positives = 124/182 (68%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IY+RLLKERIVF+   + D  A  ICAQLL L AE+P  +I LYINSPGG VTAGMAI+D
Sbjct: 25  IYNRLLKERIVFLGSDVRDDNANAICAQLLLLSAEDPNADIWLYINSPGGSVTAGMAIFD 84

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM +I   ++T  MG AASMG  LLSAG  G R+A P++R+++HQPSGG  G ASDI+  
Sbjct: 85  TMNWIPNDVATVAMGLAASMGQFLLSAGTPGKRYATPHSRVMMHQPSGGVGGTASDIKIQ 144

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           A+ ++ IKR++ E+  ++ G+T E++    DRD   +A EA D+G VD V  +  D  + 
Sbjct: 145 AEQLLHIKRQMAELIAQHTGQTAEQITLDSDRDRWFTAQEAKDYGFVDHVFQTSTDTHDV 204

Query: 215 SK 216
            K
Sbjct: 205 KK 206


>gi|326334771|ref|ZP_08200977.1| ATP-dependent Clp protease, protease subunit [Capnocytophaga sp.
           oral taxon 338 str. F0234]
 gi|325693084|gb|EGD35017.1| ATP-dependent Clp protease, protease subunit [Capnocytophaga sp.
           oral taxon 338 str. F0234]
          Length = 220

 Score =  242 bits (617), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 98/209 (46%), Positives = 144/209 (68%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           +  +G +    + +   + P ++E+        D++SRL+ +RI+F+   +   +A +I 
Sbjct: 12  IEHQGVSSTYYDAIVNSMTPYIMEERQLNVTQMDVFSRLMMDRIIFLGTDVNSQVANIIQ 71

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE+ + QK+I +YINSPGG V +G+ IYDTMQFIKP ++T C G AASM ++LL 
Sbjct: 72  AQLLFLESLDAQKDIQIYINSPGGEVYSGLGIYDTMQFIKPQVATICTGLAASMAAVLLC 131

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG R ALP++RI++HQP GG  GQASDIE +A++I+KIK  L+ I  K+ GKT +EV
Sbjct: 132 AGAKGKRSALPHSRIMIHQPLGGAQGQASDIEINAREILKIKEELSLIIAKHSGKTLQEV 191

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRI 209
             + DRD+ M ASEA D+G++D+VL  + 
Sbjct: 192 IHSSDRDYWMIASEAKDFGMIDEVLERQK 220


>gi|260060592|ref|YP_003193672.1| ATP-dependent Clp protease, proteolytic subunit [Robiginitalea
           biformata HTCC2501]
 gi|88784722|gb|EAR15891.1| ATP-dependent Clp protease, proteolytic subunit [Robiginitalea
           biformata HTCC2501]
          Length = 195

 Score =  242 bits (617), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 88/195 (45%), Positives = 136/195 (69%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +G+ P ++E+      + D++SRL+ +RI+F+   I D +A ++ AQLLFL + +  K+I
Sbjct: 1   MGMTPNIIEERQLNAIAMDVFSRLMMDRIIFLGTGISDQVANIVQAQLLFLASADSSKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG V AG+ IYDTMQFIKP ++T C G AASM ++LL AGEKG R  L ++R+
Sbjct: 61  QIYINSPGGSVYAGLGIYDTMQFIKPDVATICTGMAASMAAVLLCAGEKGKRSGLQHSRV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP  G  GQASDIE  A++++KIK  L +I  K+ G+ ++ +++  DRD+ M A EA
Sbjct: 121 MIHQPLSGAQGQASDIEIAAREVLKIKDELYQIISKHSGQPFDRIQEDSDRDYWMKAGEA 180

Query: 196 CDWGVVDKVLMSRID 210
            ++G++D++L    D
Sbjct: 181 LEYGMIDEILERDKD 195


>gi|309811144|ref|ZP_07704940.1| endopeptidase Clp [Dermacoccus sp. Ellin185]
 gi|308434874|gb|EFP58710.1| endopeptidase Clp [Dermacoccus sp. Ellin185]
          Length = 209

 Score =  242 bits (617), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 90/181 (49%), Positives = 125/181 (69%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IY+RLLKERI+F+   + D  A  ICAQLL L AE+P+K+I LYINSPGG VTAGMAI+D
Sbjct: 16  IYNRLLKERIIFLGSDVRDDNANAICAQLLLLAAEDPEKDIWLYINSPGGSVTAGMAIFD 75

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ++   + T  MG AASMG  LLSAG KG R+A P+ARI++HQP GG  G ASD++  
Sbjct: 76  TMQWVPNDVCTVAMGLAASMGQFLLSAGAKGKRYATPHARIMMHQPLGGIQGTASDVKTQ 135

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           A+ ++ IK+++ E+  ++ G+  E++    DRD   +A+EA ++G VD V     D  + 
Sbjct: 136 AEQLLHIKKQMAELIAEHTGQPVEKISADSDRDRWFTAAEAKEYGFVDHVFERSQDATKD 195

Query: 215 S 215
           +
Sbjct: 196 A 196


>gi|150009000|ref|YP_001303743.1| ATP-dependent Clp protease proteolytic subunit [Parabacteroides
           distasonis ATCC 8503]
 gi|255014831|ref|ZP_05286957.1| ATP-dependent Clp protease, proteolytic subunit [Bacteroides sp.
           2_1_7]
 gi|256840999|ref|ZP_05546506.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Parabacteroides sp. D13]
 gi|262383890|ref|ZP_06077026.1| Clp protease [Bacteroides sp. 2_1_33B]
 gi|298375768|ref|ZP_06985724.1| Clp protease [Bacteroides sp. 3_1_19]
 gi|301312050|ref|ZP_07217972.1| Clp protease [Bacteroides sp. 20_3]
 gi|149937424|gb|ABR44121.1| ATP-dependent Clp protease, proteolytic subunit [Parabacteroides
           distasonis ATCC 8503]
 gi|256736842|gb|EEU50169.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Parabacteroides sp. D13]
 gi|262294788|gb|EEY82720.1| Clp protease [Bacteroides sp. 2_1_33B]
 gi|298266805|gb|EFI08462.1| Clp protease [Bacteroides sp. 3_1_19]
 gi|300830152|gb|EFK60800.1| Clp protease [Bacteroides sp. 20_3]
          Length = 220

 Score =  242 bits (617), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 93/189 (49%), Positives = 133/189 (70%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  Q++D+ A +I AQLL+L++ +P K+IS+YI
Sbjct: 32  PTIIEERQLNVAQMDVFSRLMMDRIIFLGTQVDDYTANVIQAQLLYLDSSDPGKDISIYI 91

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V AG  IYDTMQFI   +ST C G AASM S+LL AG KG RF L ++R+++HQ
Sbjct: 92  NSPGGSVYAGYGIYDTMQFISSDVSTICTGMAASMASVLLVAGTKGKRFGLKHSRVMIHQ 151

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I+K+K+ L  I   + G+ YEE+E+  DRD  M+A EA  +G
Sbjct: 152 PLGGVQGQASDIEITAREILKVKKELYTIISDHSGRPYEEIERDGDRDFWMTAEEAKKYG 211

Query: 200 VVDKVLMSR 208
           ++D VL  +
Sbjct: 212 MIDDVLTRK 220


>gi|257452229|ref|ZP_05617528.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           3_1_5R]
 gi|257465976|ref|ZP_05630287.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315917132|ref|ZP_07913372.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|317058772|ref|ZP_07923257.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           3_1_5R]
 gi|313684448|gb|EFS21283.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           3_1_5R]
 gi|313691007|gb|EFS27842.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 195

 Score =  241 bits (616), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 99/192 (51%), Positives = 141/192 (73%), Gaps = 3/192 (1%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P V++   R ER +DI+SRLL++RI+F+  ++ D +A  + AQLL+LEAE+P K+I LYI
Sbjct: 4   PTVIDNDGRQERHFDIFSRLLRDRIIFLGTEVNDQVAASLVAQLLYLEAEDPTKDIILYI 63

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V+AG+AIYDTM ++KP I T C+GQAASMG+ LLSAG KG RFAL N+RI++HQ
Sbjct: 64  NSPGGSVSAGLAIYDTMNYVKPDIQTVCIGQAASMGAFLLSAGTKGKRFALENSRIMIHQ 123

Query: 140 PSGGFS---GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           P GG      QA+D++  A+++   K +L  I  KN GKT EEV +  +RD+ ++A EA 
Sbjct: 124 PLGGTGSGYHQATDVQIIAKELQATKEKLASIIAKNSGKTTEEVLEDTERDNYLTAEEAV 183

Query: 197 DWGVVDKVLMSR 208
           ++G++D V+ +R
Sbjct: 184 NYGLIDMVMKAR 195


>gi|269125773|ref|YP_003299143.1| endopeptidase Clp [Thermomonospora curvata DSM 43183]
 gi|268310731|gb|ACY97105.1| Endopeptidase Clp [Thermomonospora curvata DSM 43183]
          Length = 213

 Score =  241 bits (616), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 89/194 (45%), Positives = 127/194 (65%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
            V E          ++ +LL++RIVF+  Q++D +A  ICA+LL L AE+ +++I LYIN
Sbjct: 16  RVTEAAPLLPLGDQLFQQLLRKRIVFLGQQVDDDIANRICAELLLLSAEDGERDIYLYIN 75

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGG VTAGMAIYD MQ++   ++T  +G AASMG  LL AG  G R+ALP+ARI++HQP
Sbjct: 76  SPGGSVTAGMAIYDIMQYVPNDVATVGIGLAASMGQFLLCAGAPGKRYALPHARIMMHQP 135

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
           SGG  G ASDI+  A+ ++ +KR L E    + G+T E++E+  DRD   +A EA  +G 
Sbjct: 136 SGGIGGTASDIKIQAEQMLYVKRTLAERIALHTGQTVEQIERDSDRDRWFTAEEAKAYGF 195

Query: 201 VDKVLMSRIDIEEK 214
           VD V+ S   +  +
Sbjct: 196 VDHVVRSANQVPSE 209


>gi|219129357|ref|XP_002184857.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217403642|gb|EEC43593.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 188

 Score =  241 bits (616), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 87/177 (49%), Positives = 128/177 (72%)

Query: 33  YDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI 92
            D+ SRLLK+RI+ +   ++D +A ++ AQLL+L  E+P+K+I+LYINSPGG V+AGMAI
Sbjct: 1   MDVISRLLKDRILLLGQGVDDEVANVLVAQLLYLANEDPEKDITLYINSPGGSVSAGMAI 60

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIE 152
           YDTMQ++   +ST C G AASMG+ LL AG KG R ALPN+RI++HQP GG  GQA+DIE
Sbjct: 61  YDTMQYVPCDVSTVCFGMAASMGAFLLGAGAKGKRRALPNSRIMIHQPLGGAQGQAADIE 120

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
             A++I+ I+  LN    + C +  +++E   DRD  M+  EA ++G++D+V+ ++ 
Sbjct: 121 IQAKEILFIREVLNTYIAEYCDQPKDKIEADCDRDFFMTPEEAVEYGIIDEVVKTKT 177


>gi|218262313|ref|ZP_03476827.1| hypothetical protein PRABACTJOHN_02501 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223464|gb|EEC96114.1| hypothetical protein PRABACTJOHN_02501 [Parabacteroides johnsonii
           DSM 18315]
          Length = 221

 Score =  241 bits (616), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 94/205 (45%), Positives = 140/205 (68%), Gaps = 5/205 (2%)

Query: 8   KKDSEDVFLGLV-----PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQ 62
             ++ D ++ +      P ++E+        D++SRL+ +RI+F+  Q++D+ A +I AQ
Sbjct: 15  NSNALDSYMNITSSYISPTIIEERQLNVAQMDVFSRLMMDRIIFLGTQVDDYTANVIQAQ 74

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           LL+L++ +P K+IS+YINSPGG V AG  IYDTMQFI   +ST C G AAS  ++LL AG
Sbjct: 75  LLYLDSSDPGKDISIYINSPGGSVYAGYGIYDTMQFISSDVSTICTGMAASFAAVLLVAG 134

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
            KG R ALP++R+++HQP GG  GQASDIE  A++I+K+K+ L  I   + G+ YE+VE 
Sbjct: 135 TKGKRMALPHSRVMIHQPLGGAQGQASDIEITAREILKVKKELYTIISTHSGQPYEKVEH 194

Query: 183 TLDRDHIMSASEACDWGVVDKVLMS 207
             DRD+ M+A EA  +G++DKVL+ 
Sbjct: 195 DSDRDYWMTAEEALTYGMIDKVLVR 219


>gi|325676029|ref|ZP_08155712.1| ATP-dependent Clp protease, protease subunit [Rhodococcus equi ATCC
           33707]
 gi|325553267|gb|EGD22946.1| ATP-dependent Clp protease, protease subunit [Rhodococcus equi ATCC
           33707]
          Length = 195

 Score =  241 bits (616), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 92/176 (52%), Positives = 124/176 (70%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           S  +Y RLL+ERI+F+  Q++D +A  +CAQ+L L AE+P ++I+LYINSPGG VTAGMA
Sbjct: 11  SDSVYERLLRERIIFLGTQVDDDIANKLCAQILLLSAEDPTRDINLYINSPGGSVTAGMA 70

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYDTMQF +  ++TF MG AASMG  LLSAG KG R+ALP+ARI++HQPS G  G ASDI
Sbjct: 71  IYDTMQFAECDVATFGMGLAASMGQFLLSAGTKGKRYALPHARIMMHQPSAGIGGTASDI 130

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
              A+     KR + E+  ++ G+T E++    DRD   +A EA ++G VD V+  
Sbjct: 131 AIMAEQFAHTKREMAELIAEHTGQTVEQITADSDRDRWFTAKEALEYGFVDHVVTR 186


>gi|295395011|ref|ZP_06805223.1| ATP-dependent Clp protease proteolytic subunit [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294972170|gb|EFG48033.1| ATP-dependent Clp protease proteolytic subunit [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 203

 Score =  241 bits (615), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 101/181 (55%), Positives = 131/181 (72%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IY+RLLKERI+++  ++ D  A  ICAQL+ L AE+P+K+I LYINSPGG VTAGMAIYD
Sbjct: 21  IYNRLLKERIIWLGSEVRDSNANAICAQLMLLAAEDPEKDIWLYINSPGGSVTAGMAIYD 80

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ+IKP + T  MG AASMG  LLSAG KG RFA P+ARIL+HQP GG  G A+DI+  
Sbjct: 81  TMQYIKPDVGTVAMGMAASMGQFLLSAGAKGKRFATPHARILMHQPLGGIGGTATDIKIQ 140

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           A+ I+ +KR++ EI  +  GKT E++ K  DRDH  +A EA D+G +DKV+    D+   
Sbjct: 141 AELILHMKRQMAEITAEQTGKTVEQILKDNDRDHWFTADEALDYGFIDKVVTHAADVPAA 200

Query: 215 S 215
           +
Sbjct: 201 A 201


>gi|329946414|ref|ZP_08293981.1| endopeptidase Clp [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328527390|gb|EGF54388.1| endopeptidase Clp [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 212

 Score =  241 bits (615), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 96/184 (52%), Positives = 131/184 (71%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           +  IY+RLLKERI+++  ++ D  A  ICAQ+L L AE+P+++I LYINSPGG VTAGMA
Sbjct: 26  TDSIYNRLLKERIIWLGSEVRDDNANAICAQMLLLAAEDPERDIYLYINSPGGSVTAGMA 85

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYDTMQ+++P ++T   G AASMG  LLSAG KG R+  P+AR+L+HQPSGG  G A+DI
Sbjct: 86  IYDTMQYVQPDVATVATGLAASMGQHLLSAGAKGKRYLTPHARVLMHQPSGGAGGSATDI 145

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
             +A  I+K+K+ L EI   N G T EE+    DRDH  SA EA ++G VD ++ S  +I
Sbjct: 146 RINADLIIKMKQELAEITAANTGHTVEEIIADSDRDHWFSAQEALEYGFVDHIVRSSREI 205

Query: 212 EEKS 215
            +++
Sbjct: 206 GKQN 209


>gi|325955073|ref|YP_004238733.1| ATP-dependent Clp protease proteolytic subunit [Weeksella virosa
           DSM 16922]
 gi|323437691|gb|ADX68155.1| ATP-dependent Clp protease proteolytic subunit [Weeksella virosa
           DSM 16922]
          Length = 222

 Score =  241 bits (615), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 87/203 (42%), Positives = 141/203 (69%)

Query: 4   EGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQL 63
            G +    +     + P ++E+        D++SRL+ +RI+F+   I+D +A +I AQL
Sbjct: 16  SGISSLTMDSYIQAVTPYIIEERKLNVAQMDVFSRLMMDRIIFLGTAIDDQIANIIQAQL 75

Query: 64  LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           LFLE+ +  K+I +Y+NSPGG V AG+ IYDTMQ +KP ++T C G AASMG++LL+AG 
Sbjct: 76  LFLESTDATKDIQIYVNSPGGGVYAGLGIYDTMQLVKPDVATICTGMAASMGAVLLAAGA 135

Query: 124 KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
           KG R AL ++R+++HQP GG  GQA+D+E   ++I+K+K+ L +I   + G+T+E++EK 
Sbjct: 136 KGKRSALKHSRVMIHQPLGGAQGQATDMEITLKEILKLKKELYDIIAYHSGQTFEQIEKD 195

Query: 184 LDRDHIMSASEACDWGVVDKVLM 206
            +RD+ M++ EA ++G++D+VL 
Sbjct: 196 GERDYWMTSEEAKNYGMIDEVLE 218


>gi|295111709|emb|CBL28459.1| ATP-dependent Clp protease proteolytic subunit ClpP [Synergistetes
           bacterium SGP1]
          Length = 184

 Score =  241 bits (615), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 94/182 (51%), Positives = 129/182 (70%)

Query: 26  TNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV 85
           T R     D+YS L ++RIVF+   I+D +A  I AQLL L   + +KEISLYINSPGG 
Sbjct: 3   TGRKGEGRDVYSCLFEDRIVFLGSPIDDAVANGIVAQLLLLANRDEKKEISLYINSPGGS 62

Query: 86  VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS 145
           V+AG+AIYDTMQF+  P++T C+GQAASMG++LL+AG KG R ALP+A+++LHQP GG  
Sbjct: 63  VSAGLAIYDTMQFVPCPVATTCIGQAASMGAVLLAAGAKGRRSALPHAKVMLHQPLGGAG 122

Query: 146 GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           GQASD+   AQ+++K +  LN +   +  +  E VEK  DRD  MSA EA  +G++D+V+
Sbjct: 123 GQASDVALFAQELIKTREVLNALIAHHTAQKVETVEKDTDRDFFMSAQEAQRYGIIDEVI 182

Query: 206 MS 207
            +
Sbjct: 183 RN 184


>gi|19553610|ref|NP_601612.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           glutamicum ATCC 13032]
 gi|62391254|ref|YP_226656.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           glutamicum ATCC 13032]
 gi|145296394|ref|YP_001139215.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           glutamicum R]
 gi|41326594|emb|CAF21076.1| ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT CLPP1
           [Corynebacterium glutamicum ATCC 13032]
 gi|140846314|dbj|BAF55313.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 197

 Score =  241 bits (615), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 90/173 (52%), Positives = 124/173 (71%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D++ RLL ERI+F+  Q++D +A  +CAQ+L L AE+P ++ISLYINSPGG VTAGMAIY
Sbjct: 17  DVFDRLLSERIIFLGSQVDDEIANKLCAQILLLSAEDPTRDISLYINSPGGSVTAGMAIY 76

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           DTM++    I+T+ MG AASMG  LLS G KG RFALP+ARI++HQPS G  G A+DI  
Sbjct: 77  DTMKYSPCDIATYGMGLAASMGQFLLSGGTKGKRFALPHARIMMHQPSAGVGGTAADIAI 136

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
            A+     KR + ++  ++ G+T+E++ K  DRD   +A EA D+G+VD V+ 
Sbjct: 137 QAEQFAATKREMAQLIAEHTGQTFEQISKDSDRDRWFTAQEAKDYGLVDHVIT 189


>gi|86130754|ref|ZP_01049353.1| ATP-dependent Clp protease proteolytic subunit [Dokdonia
           donghaensis MED134]
 gi|85818165|gb|EAQ39325.1| ATP-dependent Clp protease proteolytic subunit [Dokdonia
           donghaensis MED134]
          Length = 224

 Score =  241 bits (615), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 92/191 (48%), Positives = 137/191 (71%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GL P ++E+       +D++SRL+ +RI+F+   I D +A ++ AQLLFLE+ +  K+I 
Sbjct: 33  GLTPNIIEERQMNIAIFDVFSRLMMDRIIFLGTGINDQVANIVQAQLLFLESTDANKDIQ 92

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG V AG+ IYDTMQFIKP ++T C G AASMG++LL AGEKG R  LP++R++
Sbjct: 93  IYINSPGGSVYAGLGIYDTMQFIKPDVATICTGMAASMGAVLLCAGEKGKRSGLPHSRVM 152

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQASDIE  A++I+ +K+ L +I  K+ G+ Y++V    DRD+ M A +A 
Sbjct: 153 IHQPMGGAQGQASDIEITAKEILTLKKELYDIIAKHSGQDYDKVYNDSDRDYWMKADKAL 212

Query: 197 DWGVVDKVLMS 207
           ++G++D++L  
Sbjct: 213 EYGMIDEILKR 223


>gi|312195810|ref|YP_004015871.1| endopeptidase Clp [Frankia sp. EuI1c]
 gi|311227146|gb|ADP80001.1| Endopeptidase Clp [Frankia sp. EuI1c]
          Length = 215

 Score =  241 bits (615), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 88/173 (50%), Positives = 122/173 (70%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y+RLL+ERI+F+   +ED +A  ICAQLL L AE+P ++I LYINSPGG V+AGMAIYD
Sbjct: 31  VYNRLLRERIIFLGTVVEDSIANAICAQLLLLNAEDPNRDIWLYINSPGGSVSAGMAIYD 90

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQF++  ++T  +G AASMG  LL AG  G R++LP+ARI++HQPSGG  G ASDI   
Sbjct: 91  TMQFVENDVATVSLGLAASMGQFLLCAGAAGKRYSLPHARIMMHQPSGGIGGTASDIAIQ 150

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+ ++  KR + E    + G+  +++E+  DRD   +A EA D+G VD V+  
Sbjct: 151 AEQMLYTKRMMQERIAFHTGQPIDQIERDSDRDRWFTAEEAKDYGFVDHVVQR 203


>gi|288920827|ref|ZP_06415125.1| Endopeptidase Clp [Frankia sp. EUN1f]
 gi|288347786|gb|EFC82065.1| Endopeptidase Clp [Frankia sp. EUN1f]
          Length = 255

 Score =  241 bits (615), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 88/180 (48%), Positives = 125/180 (69%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +++RLL+ERI+F+   +ED +A  ICAQLL L AE+PQ++I LYINSPGG V+AGMAIYD
Sbjct: 72  VFNRLLRERIIFLGSVVEDSIANAICAQLLLLNAEDPQRDIFLYINSPGGSVSAGMAIYD 131

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ+++  ++T  +G AASMG  LL AG  G R++LP+ARI++HQPSGG  G ASDI   
Sbjct: 132 TMQYVENDVATVSLGLAASMGQFLLCAGAPGKRYSLPHARIMMHQPSGGIGGTASDIAIQ 191

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           A+ ++  KR + E    + G+  E++E+  DRD   +A EA D+G VD V+     +  +
Sbjct: 192 AEQMLYTKRMMQERIAFHTGQPVEQIERDSDRDRWFTADEAKDYGFVDHVVQRARQVPSE 251


>gi|300780629|ref|ZP_07090484.1| endopeptidase Clp [Corynebacterium genitalium ATCC 33030]
 gi|300533615|gb|EFK54675.1| endopeptidase Clp [Corynebacterium genitalium ATCC 33030]
          Length = 193

 Score =  241 bits (615), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 89/173 (51%), Positives = 126/173 (72%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL+ERI+F+  Q++D +A  +CAQ+L L AE+P ++ISLYINSPGG VTAGMAIYD
Sbjct: 14  VYERLLRERIIFLGQQVDDEIANKLCAQILLLSAEDPNRDISLYINSPGGSVTAGMAIYD 73

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM++    I+T+ MG AASMG  LLS G KG RFALP+ARI++HQPS G  G A+DI   
Sbjct: 74  TMKYSPCDIATYGMGLAASMGQFLLSGGTKGKRFALPHARIMMHQPSAGVGGTAADIAIQ 133

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+   + K+ + E+  ++ G+++E++ K  DRD   +A EA D+G+VD V+ +
Sbjct: 134 AEQFAQTKKEMAELIAEHTGQSFEQITKDSDRDRWFTAQEAKDYGIVDHVISN 186


>gi|25028868|ref|NP_738922.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           efficiens YS-314]
 gi|259507930|ref|ZP_05750830.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Corynebacterium efficiens YS-314]
 gi|67460556|sp|Q8FN36|CLPP2_COREF RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|23494155|dbj|BAC19122.1| putative endopeptidase Clp chain P1 [Corynebacterium efficiens
           YS-314]
 gi|259164425|gb|EEW48979.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Corynebacterium efficiens YS-314]
          Length = 199

 Score =  241 bits (615), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 89/175 (50%), Positives = 126/175 (72%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           S DI+ RLL+ERI+F+  Q++D +A  +CAQ+L L AE+P ++ISLYINSPGG VTAGMA
Sbjct: 17  SGDIFDRLLRERIIFLGSQVDDEIANKLCAQILLLSAEDPTRDISLYINSPGGSVTAGMA 76

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYDTM++    I+T+ MG AASMG  LLS G  G R+ALP+ARI++HQPS G  G A+DI
Sbjct: 77  IYDTMKYSPCDIATYGMGLAASMGQFLLSGGTPGKRYALPHARIMMHQPSAGVGGTAADI 136

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
              A+   + KR + ++  ++ G+T+E+V K  DRD   +A +A ++G+VD V+ 
Sbjct: 137 AIQAEQFAQTKREMAKLIAEHTGQTFEQVTKDSDRDRWFTAEQAKEYGLVDHVIT 191


>gi|158317030|ref|YP_001509538.1| endopeptidase Clp [Frankia sp. EAN1pec]
 gi|158112435|gb|ABW14632.1| Endopeptidase Clp [Frankia sp. EAN1pec]
          Length = 213

 Score =  241 bits (615), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 87/180 (48%), Positives = 125/180 (69%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +++RLL+ERI+F+   +ED +A  ICAQLL L AE+P+++I LYINSPGG V+AGMAIYD
Sbjct: 30  VFNRLLRERIIFLGSVVEDSIANAICAQLLLLNAEDPERDIFLYINSPGGSVSAGMAIYD 89

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ+++  ++T  +G AASMG  LL AG  G R++LP+ARI++HQPSGG  G ASDI   
Sbjct: 90  TMQYVENDVATVSLGLAASMGQFLLCAGAPGKRYSLPHARIMMHQPSGGIGGTASDIAIQ 149

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           A+ ++  KR + E    + G+  E++E+  DRD   +A EA D+G VD V+     +  +
Sbjct: 150 AEQMLYTKRMMQERIAFHTGQPVEQIERDSDRDRWFTADEAKDYGFVDHVVQRARQVPSE 209


>gi|298714280|emb|CBJ27396.1| chloroplast clp protease P [Ectocarpus siliculosus]
          Length = 264

 Score =  241 bits (615), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 87/191 (45%), Positives = 132/191 (69%), Gaps = 4/191 (2%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V E    G    D+ SRLLK+RI+ +  ++ D +  ++ AQLL+L  ++P+K+I+LY
Sbjct: 66  MPTVGE----GSEQMDVMSRLLKDRILLLGQEVNDEVGNVLVAQLLYLANDDPEKDITLY 121

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG V+AG+AIYDTMQFI   ++T C G AASMG+ LL AG  G R +LPN+RI++H
Sbjct: 122 INSPGGSVSAGLAIYDTMQFIPCDVATVCFGMAASMGAFLLGAGSAGKRKSLPNSRIMIH 181

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG +GQA+DIE  A++I+  KR LN    +   +  +++E+  DRD  M+  EA ++
Sbjct: 182 QPLGGAAGQAADIEIQAKEILFTKRLLNGYMSEYTDQPADKIEEDTDRDFFMTPIEAMEY 241

Query: 199 GVVDKVLMSRI 209
           G++D+V+ ++ 
Sbjct: 242 GLIDEVIKTKT 252


>gi|189502525|ref|YP_001958242.1| hypothetical protein Aasi_1180 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497966|gb|ACE06513.1| hypothetical protein Aasi_1180 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 224

 Score =  241 bits (615), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 91/195 (46%), Positives = 136/195 (69%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
           D    +   V+E+     R  D++SRL+ +RI+F+   ++DH++ +I AQLLFLE+ +P+
Sbjct: 27  DHIENMTRSVIEERPTHFREIDVFSRLIMDRIIFLGMPVDDHISNIIVAQLLFLESTDPK 86

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K++ LYINSPGG V  G+ IYDTMQ+I P + T C G AASM ++LL+ G    R+ALP+
Sbjct: 87  KDVRLYINSPGGSVYPGLGIYDTMQYIAPDVHTICTGLAASMAAVLLAGGAHKKRYALPH 146

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           +RIL+HQP GG  GQASD+E   + +++IKR L +I  K+ GK+  ++EK  DRD+ M A
Sbjct: 147 SRILIHQPLGGAQGQASDMEITVKQMLEIKRDLYQILAKHTGKSQGKLEKDGDRDYWMRA 206

Query: 193 SEACDWGVVDKVLMS 207
           SEA ++G++D+VL  
Sbjct: 207 SEAKEYGIIDEVLEK 221


>gi|305665189|ref|YP_003861476.1| ATP-dependent Clp protease proteolytic subunit 2 [Maribacter sp.
           HTCC2170]
 gi|88709941|gb|EAR02173.1| ATP-dependent Clp protease proteolytic subunit 2 [Maribacter sp.
           HTCC2170]
          Length = 226

 Score =  240 bits (614), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 92/210 (43%), Positives = 139/210 (66%), Gaps = 3/210 (1%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           M ++             + P ++E+      + D++SRL+ +RI+F+   I D +A ++ 
Sbjct: 20  MYYDKIMSSM---YPTNMTPNIIEERQLNAIAMDVFSRLMMDRIIFLGTGINDQVANIVQ 76

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE+ +  K+I +YINSPGG V AG+ IYDTMQFIKP ++T C G AASMG++LL 
Sbjct: 77  AQLLFLESADASKDIQIYINSPGGSVYAGLGIYDTMQFIKPDVATICTGMAASMGAVLLC 136

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AGEKG R  L ++R+++HQP GG  GQASDIE  A++I+K+K  L +I  K+ G+  ++V
Sbjct: 137 AGEKGKRSGLTHSRVMIHQPMGGAQGQASDIEITAREILKLKEELYQIISKHSGQKLDKV 196

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRID 210
            +  DRD+ M A EA  +G++D++L+   D
Sbjct: 197 HEDSDRDYWMKADEAKKYGMIDEILVRDKD 226


>gi|25008291|sp|Q8NN01|CLPP2_CORGL RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|21325183|dbj|BAB99805.1| Protease subunit of ATP-dependent Clp proteases [Corynebacterium
           glutamicum ATCC 13032]
          Length = 201

 Score =  240 bits (614), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 90/173 (52%), Positives = 124/173 (71%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D++ RLL ERI+F+  Q++D +A  +CAQ+L L AE+P ++ISLYINSPGG VTAGMAIY
Sbjct: 21  DVFDRLLSERIIFLGSQVDDEIANKLCAQILLLSAEDPTRDISLYINSPGGSVTAGMAIY 80

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           DTM++    I+T+ MG AASMG  LLS G KG RFALP+ARI++HQPS G  G A+DI  
Sbjct: 81  DTMKYSPCDIATYGMGLAASMGQFLLSGGTKGKRFALPHARIMMHQPSAGVGGTAADIAI 140

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
            A+     KR + ++  ++ G+T+E++ K  DRD   +A EA D+G+VD V+ 
Sbjct: 141 QAEQFAATKREMAQLIAEHTGQTFEQISKDSDRDRWFTAQEAKDYGLVDHVIT 193


>gi|332169553|gb|AEE18808.1| Endopeptidase Clp [Krokinobacter diaphorus 4H-3-7-5]
          Length = 224

 Score =  240 bits (614), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 91/191 (47%), Positives = 136/191 (71%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GL P ++E+       +D++SRL+ +RI+F+   I D +A ++ AQLLFLE+ +  K+I 
Sbjct: 33  GLTPNIIEERQMNIAIFDVFSRLMMDRIIFLGTGINDQVANIVQAQLLFLESTDANKDIQ 92

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG V AG+ IYDTMQFIKP ++T C G AASMG++LL AG KG R  LP++R++
Sbjct: 93  IYINSPGGSVYAGLGIYDTMQFIKPDVATICTGMAASMGAVLLCAGAKGKRSGLPHSRVM 152

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQASDIE  A++I+ +K+ L +I  K+ G+ Y++V    DRD+ M A +A 
Sbjct: 153 IHQPMGGAQGQASDIEITAKEILTLKKELYDIIAKHSGQDYDKVYNDSDRDYWMKADKAL 212

Query: 197 DWGVVDKVLMS 207
           ++G++D++L  
Sbjct: 213 EYGMIDEILKR 223


>gi|315221928|ref|ZP_07863839.1| Clp protease [Streptococcus anginosus F0211]
 gi|319939597|ref|ZP_08013956.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           anginosus 1_2_62CV]
 gi|315188894|gb|EFU22598.1| Clp protease [Streptococcus anginosus F0211]
 gi|319811186|gb|EFW07492.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           anginosus 1_2_62CV]
          Length = 196

 Score =  240 bits (614), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 100/192 (52%), Positives = 140/192 (72%), Gaps = 2/192 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  I AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YIN+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  L+
Sbjct: 61  YINTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYLI 120

Query: 138 HQPSGGF--SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP GG     Q +D+   A+ ++K +  L +I   N GKT ++V K  +RD+ MSA E 
Sbjct: 121 HQPMGGTGSGTQQTDMAIAAEHLLKTRNNLEKILADNSGKTIKQVHKDAERDYWMSAQET 180

Query: 196 CDWGVVDKVLMS 207
            D+G +D+++ +
Sbjct: 181 LDYGFIDEIMAN 192


>gi|295132506|ref|YP_003583182.1| ATP-dependent Clp protease proteolytic subunit 2 [Zunongwangia
           profunda SM-A87]
 gi|294980521|gb|ADF50986.1| ATP-dependent Clp protease proteolytic subunit 2 [Zunongwangia
           profunda SM-A87]
          Length = 224

 Score =  240 bits (614), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 91/194 (46%), Positives = 137/194 (70%)

Query: 14  VFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQK 73
             +G+ P ++E+      + D++SRL+ +RI+F+   I D +A +I AQLLFLE+ +  K
Sbjct: 30  TPVGMTPNIIEERQMNAVAMDVFSRLMMDRIIFMGTGINDQVANIIQAQLLFLESTDSSK 89

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I +YINSPGG V AG+ IYDTMQFIKP ++T C G AASMG++LL AG +G R  LP++
Sbjct: 90  DIQIYINSPGGSVYAGLGIYDTMQFIKPDVATICTGMAASMGAVLLCAGAEGKRSGLPHS 149

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           R+++HQP GG  GQASDIE  A++I+ +K  L +I  K+ G++YE+V +  DRD+ M A 
Sbjct: 150 RVMIHQPLGGAQGQASDIEITAREIITLKEELYKIISKHSGQSYEKVYEDSDRDYWMKAD 209

Query: 194 EACDWGVVDKVLMS 207
            A ++G++D++L  
Sbjct: 210 RAKEYGMIDEILTR 223


>gi|301167838|emb|CBW27423.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           [Bacteriovorax marinus SJ]
          Length = 202

 Score =  240 bits (614), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 97/192 (50%), Positives = 140/192 (72%), Gaps = 2/192 (1%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P+V+EQT RGER YDIYSRLL +RIVF+  Q+ D +A LI AQ+LFLE ++P   I  YI
Sbjct: 11  PIVIEQTARGERQYDIYSRLLLDRIVFLGTQVNDTVANLIMAQMLFLETDDPDAPIHFYI 70

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V AG+ IYD MQ+I  P+ T+C+G AASMGSLLL+AG +G R+++P++RI++HQ
Sbjct: 71  NSPGGSVYAGLGIYDVMQYISCPVHTYCVGLAASMGSLLLTAGAEGHRYSMPHSRIMIHQ 130

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK--TYEEVEKTLDRDHIMSASEACD 197
           P GG  GQ SDI+  A++I  +K +LN IY+K+  K  + +++    DRD+ +S +EA +
Sbjct: 131 PLGGAQGQCSDIQIQAKEIQDLKDQLNGIYIKHSAKEMSMDKIVAATDRDNYLSPTEAIE 190

Query: 198 WGVVDKVLMSRI 209
            G++D ++  + 
Sbjct: 191 LGIIDHIIEKKK 202


>gi|86140705|ref|ZP_01059264.1| ATP-dependent Clp protease proteolytic subunit 2 [Leeuwenhoekiella
           blandensis MED217]
 gi|85832647|gb|EAQ51096.1| ATP-dependent Clp protease proteolytic subunit 2 [Leeuwenhoekiella
           blandensis MED217]
          Length = 237

 Score =  240 bits (613), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 92/207 (44%), Positives = 139/207 (67%), Gaps = 3/207 (1%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           M ++           +GL P ++E+      + D++SRL+ +RI+F+   I D +A ++ 
Sbjct: 33  MYYDKIVSSM---YPVGLTPNIIEERQMNAVAMDVFSRLMMDRIIFLGTGINDQVANIVQ 89

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE+ +  K+I +YINSPGG V AG+ IYDTMQFIKP ++T C G AASMG++LL 
Sbjct: 90  AQLLFLESADASKDIQIYINSPGGSVYAGLGIYDTMQFIKPDVATICTGMAASMGAVLLC 149

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG R  L ++R+++HQP GG  GQASDIE  A++I+ +K  L  I  K+ G+TY++V
Sbjct: 150 AGAKGKRSGLTHSRVMIHQPMGGAQGQASDIEITAKEILTLKEELYNIIAKHSGQTYDKV 209

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMS 207
            +  DRD+ M A +A ++G++D++L  
Sbjct: 210 YEDSDRDYWMKADKALEYGMIDEILAR 236


>gi|313891327|ref|ZP_07824945.1| endopeptidase Clp [Streptococcus pseudoporcinus SPIN 20026]
 gi|313120394|gb|EFR43515.1| endopeptidase Clp [Streptococcus pseudoporcinus SPIN 20026]
          Length = 196

 Score =  240 bits (613), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 97/192 (50%), Positives = 141/192 (73%), Gaps = 2/192 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  I AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  L+
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYLI 120

Query: 138 HQPSGGF--SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP GG     Q +D+   A+ ++K ++RL +I   N GKT +++ K  +RD+ M A E 
Sbjct: 121 HQPMGGAGSGTQQTDMAIVAEQLLKTRKRLEKILADNSGKTIKQIHKDAERDYWMDAKET 180

Query: 196 CDWGVVDKVLMS 207
            ++G +D+++ +
Sbjct: 181 LEYGFIDEIMEN 192


>gi|291451317|ref|ZP_06590707.1| ATP dependent Clp protease proteolytic subunit 1 [Streptomyces
           albus J1074]
 gi|291354266|gb|EFE81168.1| ATP dependent Clp protease proteolytic subunit 1 [Streptomyces
           albus J1074]
          Length = 219

 Score =  240 bits (613), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 97/213 (45%), Positives = 138/213 (64%), Gaps = 2/213 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYD-IYSRLLKERIVFVTGQIEDHMATLI 59
           M   G   + +      L+P      + G    D +Y+RLL ERI+F+   ++D +A  I
Sbjct: 1   MRRPGAVVRRAGGYVTNLMPSAAGDPSIGGGLGDQVYNRLLGERIIFLGQPVDDDIANKI 60

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
            AQLL L ++ P K+I+LYINSPGG ++AGMAIYDTMQFIK  + T  MG AASMG  LL
Sbjct: 61  TAQLLLLASD-PDKDINLYINSPGGSISAGMAIYDTMQFIKNDVVTIAMGLAASMGQFLL 119

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
           SAG  G RFALPNA IL+HQPS G +G ASDI+ HA+ ++  K+R+ E+   + G++ E+
Sbjct: 120 SAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTAFHTGQSVEQ 179

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
           + +  DRD   SA EA ++G++D+V+ S  ++ 
Sbjct: 180 ITRDSDRDRWFSADEAKEYGLIDEVIASAANVP 212


>gi|261880040|ref|ZP_06006467.1| ATP-dependent Clp protease proteolytic subunit [Prevotella
           bergensis DSM 17361]
 gi|270333280|gb|EFA44066.1| ATP-dependent Clp protease proteolytic subunit [Prevotella
           bergensis DSM 17361]
          Length = 232

 Score =  240 bits (613), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 90/197 (45%), Positives = 138/197 (70%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  +++D+ A  + AQLL+L++ + +K+IS+YI
Sbjct: 33  PYILEERQLNVTQMDVFSRLMMDRIIFLGTEVDDYTANTLQAQLLYLDSVDNEKDISIYI 92

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VTAG+ IYDTMQFI   ++T C G AASMG++LL +G +G R ALP+AR+++HQ
Sbjct: 93  NSPGGSVTAGLGIYDTMQFISSSVATICTGMAASMGAVLLVSGAEGKRAALPHARVMIHQ 152

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I+K K+ L  I   +  ++YE+V K  DR++ M+A EA  +G
Sbjct: 153 PLGGVQGQASDIEIEAREILKFKKELYTIIANHSHQSYEKVWKDSDRNYWMNAEEAKAYG 212

Query: 200 VVDKVLMSRIDIEEKSK 216
           ++D VL  + +  E  K
Sbjct: 213 MIDMVLTRKNNETENGK 229


>gi|237785951|ref|YP_002906656.1| ATP-dependent Clp protease proteolytic subunit 1 [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758863|gb|ACR18113.1| ATP-dependent Clp protease proteolytic subunit 1 [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 212

 Score =  240 bits (613), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 92/194 (47%), Positives = 128/194 (65%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P +   T     +  ++ RLL+ERI+F+  ++ D +A  +CAQ+L L AE+P ++ISLYI
Sbjct: 19  PTMDNGTAGLNLNDSVFERLLRERIIFLGTEVNDDIANRLCAQILLLSAEDPTRDISLYI 78

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VTAGMAIYDTM +    I+T+ MG AASMG  LL+AG KG R+ALP+ARIL+HQ
Sbjct: 79  NSPGGSVTAGMAIYDTMTYAPCDIATYGMGLAASMGQFLLTAGTKGKRYALPHARILMHQ 138

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           PS G  G A+DI   A+   + KR L E+  ++ G++ E ++K  DRD    A EA ++G
Sbjct: 139 PSAGVGGTAADIAIQAEQFARTKRDLAELNAQHTGQSLERIQKDSDRDRWFDAQEALEYG 198

Query: 200 VVDKVLMSRIDIEE 213
            VD V+ S  +  E
Sbjct: 199 FVDHVITSAKEETE 212


>gi|227833714|ref|YP_002835421.1| ATP-dependent Clp protease proteolytic subunit 1 [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262184721|ref|ZP_06044142.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454730|gb|ACP33483.1| ATP-dependent Clp protease proteolytic subunit 1 [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 199

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 89/176 (50%), Positives = 127/176 (72%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           S  +Y RLL+ERI+F+  Q++D +A  +CAQ+L L AE+P ++ISLYINSPGG VTAGMA
Sbjct: 17  SDSVYERLLRERIIFLGTQVDDEIANKLCAQILLLSAEDPTRDISLYINSPGGSVTAGMA 76

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYDTM++    ++T+ MG AASMG  LLS G KG R+ALP+ARI++HQPS G  G A+DI
Sbjct: 77  IYDTMKYSPCDVATYGMGLAASMGQFLLSGGTKGKRYALPHARIMMHQPSAGVGGTAADI 136

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
              A+   + KR + E+  ++ G+T+E++ K  DRD   +A +A ++G+VD V+ S
Sbjct: 137 AIQAEQFAQTKREMAELIAEHTGQTFEQITKDSDRDRWFTAQQAKEYGIVDHVIES 192


>gi|255038319|ref|YP_003088940.1| Endopeptidase Clp [Dyadobacter fermentans DSM 18053]
 gi|254951075|gb|ACT95775.1| Endopeptidase Clp [Dyadobacter fermentans DSM 18053]
          Length = 224

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 86/186 (46%), Positives = 132/186 (70%)

Query: 22  VVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS 81
           V+E+     R  D++SRL+ +RI+F+   ++D++A +I AQLLFLE+ +P+K+I +YINS
Sbjct: 37  VIEERPMNFREVDVFSRLMADRIIFMGTGVDDNIANIIVAQLLFLESADPKKDILMYINS 96

Query: 82  PGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
           PGG V AG+ IYDTMQ+++P ++T C   AASMG++LL+ G  G R ALP+AR+++HQPS
Sbjct: 97  PGGSVYAGLGIYDTMQYVRPDVATVCTSLAASMGAVLLAGGAAGKRSALPHARVMIHQPS 156

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
           GG  G + DIE   ++IVK++  L EI   + G+T E++    DRD  + A EA ++G++
Sbjct: 157 GGAQGTSVDIEITTREIVKLRHELYEILAHHTGQTPEQIALDSDRDKWLKALEAKEYGLI 216

Query: 202 DKVLMS 207
           D+VL  
Sbjct: 217 DEVLTR 222


>gi|255535603|ref|YP_003095974.1| ATP-dependent Clp protease proteolytic subunit [Flavobacteriaceae
           bacterium 3519-10]
 gi|255341799|gb|ACU07912.1| ATP-dependent Clp protease proteolytic subunit [Flavobacteriaceae
           bacterium 3519-10]
          Length = 228

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 97/206 (47%), Positives = 146/206 (70%), Gaps = 6/206 (2%)

Query: 11  SEDVFLGL------VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLL 64
           + D ++G+       P ++E+        D++SRL+ +RI+F+   I+D +A ++ AQLL
Sbjct: 21  ATDQYMGMYGPTNLTPYIMEERRLNVAQMDVFSRLMMDRIIFLGTGIDDQVANIVTAQLL 80

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           FLE+ +  K+I +YINSPGG V AG+ IYDTMQ IKP +ST C G AASMG++LL AGEK
Sbjct: 81  FLESSDASKDIQIYINSPGGSVYAGLGIYDTMQIIKPDVSTICTGMAASMGAVLLVAGEK 140

Query: 125 GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
           G R AL ++R+++HQPSGG  G ASD+E + ++++K+K+ L +I   + G+TYE VEK  
Sbjct: 141 GKRSALKHSRVMIHQPSGGAQGVASDMEINLREMLKLKKELYDIISIHSGQTYEWVEKAS 200

Query: 185 DRDHIMSASEACDWGVVDKVLMSRID 210
           DRD+ M++SEA ++G+VD+VL  + D
Sbjct: 201 DRDYWMTSSEAKEYGMVDEVLERKTD 226


>gi|111221348|ref|YP_712142.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
           [Frankia alni ACN14a]
 gi|111148880|emb|CAJ60559.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
           [Frankia alni ACN14a]
          Length = 213

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 90/190 (47%), Positives = 127/190 (66%), Gaps = 2/190 (1%)

Query: 27  NRGERSYD--IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG 84
            +G  ++D  +++RLL  RIVF+   +ED +A  ICAQLL L AE+P ++I LYINSPGG
Sbjct: 20  GQGGPAFDDQVFNRLLANRIVFLGSVVEDSIANAICAQLLLLNAEDPTRDIFLYINSPGG 79

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
            V+AGMAIYDTMQF++  ++T  +G AASMG  LL AG  G R++LP+ARI++HQPSGG 
Sbjct: 80  SVSAGMAIYDTMQFVENDVATVSLGLAASMGQFLLCAGAPGKRYSLPHARIMMHQPSGGI 139

Query: 145 SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            G ASDI   A+ ++  KR + E    + G+  E++E+  DRD   +A EA D+G VD V
Sbjct: 140 GGTASDIAIQAEQMLYTKRMMQERIAFHTGQPIEQIERDSDRDRWFTAEEAKDYGFVDHV 199

Query: 205 LMSRIDIEEK 214
           +     +  +
Sbjct: 200 VQQARQVPSE 209


>gi|15485610|emb|CAC67407.1| Clp protease 2 proteolytic subunit [Solanum lycopersicum]
          Length = 299

 Score =  240 bits (612), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 90/191 (47%), Positives = 129/191 (67%), Gaps = 6/191 (3%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G  PMV E      R   + S+L + RI+   G ++D MA +I AQLL+L+A +P K+I 
Sbjct: 100 GPPPMVQE------RFQSVISQLFQYRIIRCGGAVDDDMANVIVAQLLYLDAVDPTKDIV 153

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+NSPGG VTAGMA++DTM+ I+P +ST C+G AASMG+ LLSAG KG R++LPN+RI+
Sbjct: 154 MYVNSPGGSVTAGMAVFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIM 213

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  G  SDIE  A +++  K  LN       G++ + + +  DRD  MSA EA 
Sbjct: 214 IHQPLGGAQGGQSDIEIQANEMLHHKANLNGYLAYQTGQSLDRINQDTDRDFFMSAKEAK 273

Query: 197 DWGVVDKVLMS 207
           ++G++D V+M+
Sbjct: 274 EYGLIDGVIMN 284


>gi|148240100|ref|YP_001225487.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           WH 7803]
 gi|147848639|emb|CAK24190.1| Protease subunit of ATP-dependent Clp protease [Synechococcus sp.
           WH 7803]
          Length = 200

 Score =  240 bits (612), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 90/193 (46%), Positives = 135/193 (69%), Gaps = 2/193 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP  +  +   ER  DIY+RL  ERI+F+  ++ D +A  + AQ+L+L++E+  K I LY
Sbjct: 8   VPYRLPGSQM-ERWVDIYTRLGVERILFLGSEVNDAVANSLVAQMLYLDSEDSGKPIYLY 66

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDTM+++K  + T C+G AASMG+ LL+AG +G R ALP++RI++H
Sbjct: 67  INSPGGSVTAGLAIYDTMKYVKSDVVTICVGLAASMGAFLLAAGTQGKRLALPHSRIMIH 126

Query: 139 QP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP  G    QASDIE  AQ+I+++K  LN       G+++E++EK  DRD+ +S+ EA D
Sbjct: 127 QPLGGTAQRQASDIEIEAQEILRMKEMLNRSMADMSGQSFEKIEKDTDRDYFLSSQEAMD 186

Query: 198 WGVVDKVLMSRID 210
           +G++D+V+    +
Sbjct: 187 YGLIDRVIAHPNE 199


>gi|163841993|ref|YP_001626398.1| ATP-dependent endopeptidase Clp proteolytic subunit [Renibacterium
           salmoninarum ATCC 33209]
 gi|162955469|gb|ABY24984.1| ClpP [Renibacterium salmoninarum ATCC 33209]
          Length = 259

 Score =  240 bits (612), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 93/185 (50%), Positives = 125/185 (67%), Gaps = 1/185 (0%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P +   +  G+  Y +Y+RLLK+R +++  ++ D  A LIC+QLL L +E+  KEI LYI
Sbjct: 60  PQMATVSPGGQDDY-VYNRLLKQRTIWLGSEVRDDNANLICSQLLLLASEDQDKEIYLYI 118

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VTAGMAIYDTMQFI   + T   G AASMG  LLS+G KG R+A PNARIL+HQ
Sbjct: 119 NSPGGSVTAGMAIYDTMQFIPNDVVTVATGLAASMGQFLLSSGAKGKRYATPNARILMHQ 178

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           PSGG  G ASDI+  A+ I+ +K+ + E+  +  G+T E++ K  DRD   +A EA  +G
Sbjct: 179 PSGGIGGTASDIKIQAELILHMKKVMAELTAEQTGQTVEQILKDNDRDKWFTAEEALAYG 238

Query: 200 VVDKV 204
             DK+
Sbjct: 239 FFDKI 243


>gi|296270441|ref|YP_003653073.1| endopeptidase Clp [Thermobispora bispora DSM 43833]
 gi|296093228|gb|ADG89180.1| Endopeptidase Clp [Thermobispora bispora DSM 43833]
          Length = 217

 Score =  240 bits (612), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 84/180 (46%), Positives = 121/180 (67%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y  LL+ERIV +  Q+ D +A  ICAQLL L AE+ +++I +YINSPGG VT+GMAIYD
Sbjct: 34  LYQWLLRERIVVLGSQVTDEVANRICAQLLLLAAEDEERDIWMYINSPGGSVTSGMAIYD 93

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            MQ++   + T  MG AASMG  LL AG +G R+ALP+ARI++HQPSGG  G A+D+   
Sbjct: 94  MMQYVPNDVCTVAMGLAASMGQFLLCAGTRGKRYALPHARIMMHQPSGGIGGTAADVAIQ 153

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           A+ ++ +K+ L E    + G+T E++E+  DRD   +A EA  +G +D V+ S   +  +
Sbjct: 154 AEQMLYVKKTLAERIAYHTGQTVEQIERDSDRDRWFTAEEAKAYGFIDHVVRSARQVPSQ 213


>gi|125623498|ref|YP_001031981.1| ATP-dependent Clp protease proteolytic subunit [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|18203672|sp|Q9ZAB0|CLPP_LACLM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|11528583|gb|AAD01866.2| protease [Lactococcus lactis subsp. cremoris MG1363]
 gi|124492306|emb|CAL97240.1| ATP-dependent Clp protease proteolytic subunit [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|300070250|gb|ADJ59650.1| ATP-dependent Clp protease proteolytic subunit [Lactococcus lactis
           subsp. cremoris NZ9000]
          Length = 199

 Score =  240 bits (612), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 96/192 (50%), Positives = 138/192 (71%), Gaps = 2/192 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ++RGER+YDIYSRLLK+RI+ +TG +ED MA  I AQLLFL+A++  K+I L
Sbjct: 4   LVPTVIEQSSRGERAYDIYSRLLKDRIIMLTGPVEDGMANSIIAQLLFLDAQDNTKDIYL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  L+
Sbjct: 64  YVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYLI 123

Query: 138 HQPSGGF--SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP GG     Q +D+   A+ ++K ++RL +I   N  ++ E++ K  +RDH M A E 
Sbjct: 124 HQPMGGAGQGTQQTDMAIVAEQLLKTRKRLEQILADNSNRSLEQIHKDAERDHWMDAKET 183

Query: 196 CDWGVVDKVLMS 207
            ++G +D+++ +
Sbjct: 184 LEYGFIDEIMEN 195


>gi|296129240|ref|YP_003636490.1| Endopeptidase Clp [Cellulomonas flavigena DSM 20109]
 gi|296021055|gb|ADG74291.1| Endopeptidase Clp [Cellulomonas flavigena DSM 20109]
          Length = 206

 Score =  239 bits (611), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 88/173 (50%), Positives = 125/173 (72%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IY+RLL+ERI+++  ++ D  A  ICAQ++ L AE+P K+I LYINSPGG +TAGMAIYD
Sbjct: 22  IYNRLLRERIIWLGSEVRDENANAICAQMMLLAAEDPDKDIWLYINSPGGSITAGMAIYD 81

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ+IKP ++T  MG AASMG  LLS+G KG R+A P+AR+++HQPSGG  G A+D+  +
Sbjct: 82  TMQYIKPDVATIAMGMAASMGQFLLSSGTKGKRYATPHARVMMHQPSGGIGGTATDVRIN 141

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A  I+ +K+ L E+  +  GK+ E++    DRD   +A EA ++G +D V+ S
Sbjct: 142 AALILHMKKVLAELIAEQTGKSVEQINADSDRDRWFTAPEALEYGFIDHVVSS 194


>gi|254423169|ref|ZP_05036887.1| Clp protease [Synechococcus sp. PCC 7335]
 gi|196190658|gb|EDX85622.1| Clp protease [Synechococcus sp. PCC 7335]
          Length = 200

 Score =  239 bits (611), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 99/192 (51%), Positives = 139/192 (72%), Gaps = 2/192 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP  +  +   E+   IY RL +ERI+F+T +++D +A  I A +L+L++E+  K I LY
Sbjct: 8   VPYRLPGSTY-EQWISIYERLFRERIIFLTEEVDDGIANAIVAYMLYLDSEDSTKPIYLY 66

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAGMAIYDTMQ+IK  + T CMG AASMG+ LL+AG KG R ALP++RI++H
Sbjct: 67  INSPGGSVTAGMAIYDTMQYIKSEVVTICMGLAASMGAFLLNAGTKGKRLALPHSRIMIH 126

Query: 139 QPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QPSGG    QA+DIE  A  IV+++R LNE+   + G+T EE+E+  DRD+ MSA EA +
Sbjct: 127 QPSGGVGRRQATDIEIEAVRIVQVRRELNELMAAHSGRTVEEIERDSDRDNFMSAEEAKE 186

Query: 198 WGVVDKVLMSRI 209
           +G++D+V+  R+
Sbjct: 187 YGLIDRVIEERL 198


>gi|329116784|ref|ZP_08245501.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Streptococcus parauberis NCFD 2020]
 gi|326907189|gb|EGE54103.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Streptococcus parauberis NCFD 2020]
          Length = 196

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 97/192 (50%), Positives = 139/192 (72%), Gaps = 2/192 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  I AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  L+
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYLI 120

Query: 138 HQPSGGFSG--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP GG     Q SD+   A+ ++K ++RL +I   N GKT + + +  +RD+ M A E 
Sbjct: 121 HQPMGGAGNGTQQSDMAIVAEQLLKTRKRLEKILADNSGKTIKVIHRDAERDYWMDAKET 180

Query: 196 CDWGVVDKVLMS 207
             +G +D+++ +
Sbjct: 181 LAYGFIDEIMEN 192


>gi|227497466|ref|ZP_03927695.1| endopeptidase Clp [Actinomyces urogenitalis DSM 15434]
 gi|226833040|gb|EEH65423.1| endopeptidase Clp [Actinomyces urogenitalis DSM 15434]
          Length = 205

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 101/200 (50%), Positives = 133/200 (66%), Gaps = 1/200 (0%)

Query: 18  LVPMVVEQTNRGERSYD-IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           + PM  +    G    D IY+RLLKERI+++  ++ D  A  ICAQ+L L AE+P+++I 
Sbjct: 5   IAPMAADSHGGGLGLTDSIYNRLLKERIIWLGSEVRDDNANAICAQMLLLAAEDPERDIY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGMAIYDTMQ I+P + T   G AASMG  LLSAG KG R+  P+AR+L
Sbjct: 65  LYINSPGGSVTAGMAIYDTMQLIQPDVVTVATGMAASMGQHLLSAGAKGKRYITPHARVL 124

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  G A+DI  +A  I+K+K  L EI   N G T EE+    DRDH  SA EA 
Sbjct: 125 MHQPSGGAGGSATDIRINADLIIKMKHELAEITADNTGHTVEEIIADSDRDHWFSAQEAL 184

Query: 197 DWGVVDKVLMSRIDIEEKSK 216
           ++G VD ++ S  +I++  +
Sbjct: 185 EYGFVDHIISSSREIQQNGE 204


>gi|298372622|ref|ZP_06982612.1| Clp protease [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275526|gb|EFI17077.1| Clp protease [Bacteroidetes oral taxon 274 str. F0058]
          Length = 226

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 90/188 (47%), Positives = 135/188 (71%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+   I+D++A +I AQLLFL+  +P K+IS+YI
Sbjct: 35  PTILEERQLNVTQMDVFSRLMMDRIIFLGTPIDDYVANVIQAQLLFLDTSDPGKDISIYI 94

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGGVV AG+ IYDTMQ++   + T C G AASM ++LL AGEKG R ALP++R+++HQ
Sbjct: 95  NSPGGVVQAGLGIYDTMQYVSSKVGTICTGMAASMAAVLLVAGEKGRRSALPHSRVMIHQ 154

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           PSGG  GQ+SD+E   +++ K+++ L  I  ++ G+ ++ VEK  DRD+ M+A EA D+G
Sbjct: 155 PSGGMQGQSSDMEIAVREVQKLRKELYHIISEHSGQPFDRVEKDSDRDYWMTAQEALDYG 214

Query: 200 VVDKVLMS 207
           +VD VL  
Sbjct: 215 MVDSVLTK 222


>gi|289641547|ref|ZP_06473709.1| Endopeptidase Clp [Frankia symbiont of Datisca glomerata]
 gi|289508642|gb|EFD29579.1| Endopeptidase Clp [Frankia symbiont of Datisca glomerata]
          Length = 223

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 101/209 (48%), Positives = 153/209 (73%), Gaps = 2/209 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           ++ +G   +     +  ++P V+E+T+RGE + D Y +LL+ERI+F+  QI+D  A  + 
Sbjct: 5   ITGQGDTSRQPVSRY--VLPRVIERTSRGEIALDPYEKLLRERIIFLGVQIDDTSANDVM 62

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE+E+P ++IS+YINSPGG  TA  AIYDTMQF++P I T CMGQAAS  S+LL+
Sbjct: 63  AQLLFLESEDPDRDISIYINSPGGSFTALTAIYDTMQFVRPDIQTICMGQAASAASVLLA 122

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG  G RF L N+RILLHQPSG   GQ+SD+E  A++I++++  L  IY ++ G++ EE+
Sbjct: 123 AGTPGKRFGLENSRILLHQPSGQGEGQSSDLEIQAREILRMRALLERIYARHTGRSEEEI 182

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRI 209
            + ++RD I+SA+EA ++G++D+V+ +R 
Sbjct: 183 RRDIERDKILSAAEAKEYGLIDEVISTRK 211


>gi|311746206|ref|ZP_07719991.1| Clp protease [Algoriphagus sp. PR1]
 gi|126576434|gb|EAZ80712.1| Clp protease [Algoriphagus sp. PR1]
          Length = 223

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 90/187 (48%), Positives = 139/187 (74%)

Query: 22  VVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS 81
           V+E+  +  R  D++SRL+ +RI+F+   I+DH+A +I AQLLFLE+ + +K++ LY+NS
Sbjct: 36  VIEERPQNFREIDVFSRLIMDRIIFLGTGIDDHIANIIVAQLLFLESVDAKKDVLLYVNS 95

Query: 82  PGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
           PGG VTAG+ IYDTMQ+I P ++T C G AASMG++LL+ G K  R AL ++R+++HQPS
Sbjct: 96  PGGSVTAGLGIYDTMQYIGPDVATICTGIAASMGAVLLAGGAKDKRSALKHSRVMIHQPS 155

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
           GG  GQ+SD+E   + I+ +++ L +I   + GKTYEE+E+  DRD+ + A EA D+G++
Sbjct: 156 GGMQGQSSDMEISLKLILSMRQELYQILANHTGKTYEEIERDSDRDYWLKAPEAKDYGLI 215

Query: 202 DKVLMSR 208
           D+VL+ +
Sbjct: 216 DEVLVKK 222


>gi|227495366|ref|ZP_03925682.1| endopeptidase Clp [Actinomyces coleocanis DSM 15436]
 gi|226831120|gb|EEH63503.1| endopeptidase Clp [Actinomyces coleocanis DSM 15436]
          Length = 205

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 97/190 (51%), Positives = 127/190 (66%), Gaps = 1/190 (0%)

Query: 19  VPMVVEQTNRGERSYD-IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            P      +RG    D +++RLLKERI+++ G++ D  A  ICAQ+L L AE+P K+I L
Sbjct: 8   TPSAHGDMDRGMPLGDAVFNRLLKERIIWLGGEVRDENANQICAQMLLLAAEDPDKDIYL 67

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGMAIYDTMQFIKP + T   G AASMG  LL+AG KG R+A P+ARILL
Sbjct: 68  YINSPGGSVTAGMAIYDTMQFIKPDVVTVATGIAASMGQFLLTAGAKGKRYATPHARILL 127

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  G  ++I  +A  I+++KR L EI  +  GKT E++    DRDH  +A EA +
Sbjct: 128 HQPLGGVGGTTTEIRINADLILQMKRELAEITAERTGKTVEQIHADADRDHWYTAQEALE 187

Query: 198 WGVVDKVLMS 207
           +G  D ++  
Sbjct: 188 YGFFDHIVTK 197


>gi|116791922|gb|ABK26160.1| unknown [Picea sitchensis]
          Length = 303

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 91/191 (47%), Positives = 131/191 (68%), Gaps = 6/191 (3%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G  PM+ E      R   + S+L + RI+   G ++D MA LI AQLL+L+A +P ++I 
Sbjct: 105 GPPPMLQE------RFQSVISQLFQHRIIRCGGAVDDDMANLIVAQLLYLDAADPNRDII 158

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VTAGMA++DTM+ I+P +ST C+G AASMG+ LLS+G KG R++LPN+RI+
Sbjct: 159 MYINSPGGSVTAGMAVFDTMRHIRPDVSTVCVGLAASMGAFLLSSGTKGKRYSLPNSRIM 218

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQ SD+E  A +I+  K  LN     + G++ E++ +  DRD  MSA EA 
Sbjct: 219 IHQPLGGGQGQQSDLEIQANEILHHKANLNGYLAYHTGQSIEKIVEDTDRDFFMSAKEAK 278

Query: 197 DWGVVDKVLMS 207
           D+G++D V+ +
Sbjct: 279 DYGLIDGVIAN 289


>gi|149369719|ref|ZP_01889571.1| endopeptidase Clp (ATP-dependent Clp protease proteolytic subunit)
           [unidentified eubacterium SCB49]
 gi|149357146|gb|EDM45701.1| endopeptidase Clp (ATP-dependent Clp protease proteolytic subunit)
           [unidentified eubacterium SCB49]
          Length = 226

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 89/194 (45%), Positives = 136/194 (70%)

Query: 14  VFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQK 73
             +GL P ++E+      + D++SRL+ +RI+F+   I D +A ++ AQLLFL + +  +
Sbjct: 30  YPVGLTPNIIEERQMNAVAMDVFSRLMMDRIIFLGTGINDQVANIVQAQLLFLASVDATR 89

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I +YINSPGG V AG+ IYDTMQFI P ++T C G AASMG++LL AGEKG R  L ++
Sbjct: 90  DIQIYINSPGGSVYAGLGIYDTMQFITPDVATICTGMAASMGAVLLCAGEKGKRSGLTHS 149

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           R+++HQP GG  GQASDIE  A++I+ +K+ L EI  K+ G+ Y++V +  DRD+ M A 
Sbjct: 150 RVMIHQPMGGAQGQASDIEITAKEIITLKKELYEIISKHTGQDYDKVYEDSDRDYWMKAD 209

Query: 194 EACDWGVVDKVLMS 207
           +A ++G++D++L  
Sbjct: 210 KALEYGMIDEILTR 223


>gi|116511469|ref|YP_808685.1| ATP-dependent Clp protease proteolytic subunit [Lactococcus lactis
           subsp. cremoris SK11]
 gi|123320556|sp|Q030V9|CLPP_LACLS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|116107123|gb|ABJ72263.1| ATP-dependent Clp protease proteolytic subunit ClpP [Lactococcus
           lactis subsp. cremoris SK11]
          Length = 199

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 96/192 (50%), Positives = 138/192 (71%), Gaps = 2/192 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ++RGER+YDIYSRLLK+RI+ +TG +ED MA  I AQLLFL+A++  K+I L
Sbjct: 4   LVPTVIEQSSRGERAYDIYSRLLKDRIIMLTGPVEDGMANSIIAQLLFLDAQDNTKDIYL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  L+
Sbjct: 64  YVNTPGGSVSAGLAIVDTMNFIKSDVLTIVMGMAASMGTIIASSGTKGKRFMLPNAEYLI 123

Query: 138 HQPSGGF--SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP GG     Q +D+   A+ ++K ++RL +I   N  ++ E++ K  +RDH M A E 
Sbjct: 124 HQPMGGAGQGTQQTDMAIVAEQLLKTRKRLEQILADNSNRSLEQIHKDAERDHWMDAKET 183

Query: 196 CDWGVVDKVLMS 207
            ++G +D+++ +
Sbjct: 184 LEYGFIDEIMEN 195


>gi|325066963|ref|ZP_08125636.1| Endopeptidase Clp [Actinomyces oris K20]
 gi|326771855|ref|ZP_08231140.1| Clp protease [Actinomyces viscosus C505]
 gi|326637988|gb|EGE38889.1| Clp protease [Actinomyces viscosus C505]
          Length = 212

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 96/184 (52%), Positives = 131/184 (71%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           +  IY+RLLKERI+++  ++ D  A  ICAQ+L L AE+P+++I LYINSPGG VTAGMA
Sbjct: 26  TDSIYNRLLKERIIWLGSEVRDDNANAICAQMLLLAAEDPERDIYLYINSPGGSVTAGMA 85

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYDTMQ+++P ++T   G AASMG  LLSAG KG R+  P+AR+L+HQPSGG  G A+DI
Sbjct: 86  IYDTMQYVQPDVATVATGLAASMGQHLLSAGAKGKRYLTPHARVLMHQPSGGAGGSATDI 145

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
             +A  I+K+K+ L EI   N G T EE+    DRDH  SA EA ++G VD ++ S  +I
Sbjct: 146 RINADLIIKMKQELAEITAANTGHTVEEIIADSDRDHWFSAQEALEYGFVDHIVRSSREI 205

Query: 212 EEKS 215
            +++
Sbjct: 206 GKQN 209


>gi|255325480|ref|ZP_05366582.1| Clp protease [Corynebacterium tuberculostearicum SK141]
 gi|311741272|ref|ZP_07715096.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|255297418|gb|EET76733.1| Clp protease [Corynebacterium tuberculostearicum SK141]
 gi|311303442|gb|EFQ79521.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 199

 Score =  239 bits (610), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 92/176 (52%), Positives = 128/176 (72%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           S  +Y RLL+ERI+F+  Q++D +A  +CAQ+L L AE+P ++ISLYINSPGG VTAGMA
Sbjct: 17  SDSVYERLLRERIIFLGTQVDDEIANKLCAQILLLSAEDPTRDISLYINSPGGSVTAGMA 76

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYDTM++    I+T+ MG AASMG  LLS G KG R+ALP+ARI++HQPS G  G A+DI
Sbjct: 77  IYDTMKYSPCDIATYGMGLAASMGQFLLSGGTKGKRYALPHARIMMHQPSAGVGGTAADI 136

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
              A+   + KR + E+  ++ G+T+E++ K  DRD  M+A +A D+G+VD V+ S
Sbjct: 137 AIQAEQFAQTKREMAELIAEHTGQTFEQITKDSDRDRWMTAQQAKDYGIVDHVIES 192


>gi|38234363|ref|NP_940130.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           diphtheriae NCTC 13129]
 gi|67460484|sp|Q6NFU4|CLPP2_CORDI RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|38200626|emb|CAE50322.1| ATP-dependent Clp protease proteolytic subunit 1 [Corynebacterium
           diphtheriae]
          Length = 199

 Score =  239 bits (610), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 90/176 (51%), Positives = 127/176 (72%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           S  +Y RLL+ERI+F+  Q++D +A  +CAQ+L L AE+P ++ISLYINSPGG VTAGMA
Sbjct: 17  SDSVYERLLRERIIFLGTQVDDEIANKLCAQILLLSAEDPTRDISLYINSPGGSVTAGMA 76

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYDTM++    I+T+ MG AASMG  LLS G KG RFALP+ARI++HQPS G  G A+DI
Sbjct: 77  IYDTMKYSPCDIATYGMGLAASMGQFLLSGGTKGKRFALPHARIMMHQPSAGVGGTAADI 136

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
              A+   + KR + E+  ++ G+++E++ K  DRD   +A +A ++G+VD V+ S
Sbjct: 137 AIQAEQFAQTKREMAELIAEHTGQSFEQITKDSDRDRWFTAQQAKEYGIVDHVIES 192


>gi|224079413|ref|XP_002305856.1| predicted protein [Populus trichocarpa]
 gi|222848820|gb|EEE86367.1| predicted protein [Populus trichocarpa]
          Length = 338

 Score =  239 bits (610), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 84/176 (47%), Positives = 123/176 (69%)

Query: 31  RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGM 90
              D  + LL++RI+F+  Q++D  A  I +QLLFL+AE+P+K+I L+INSPGG VTAG+
Sbjct: 95  EELDTTNMLLRQRIIFLGSQVDDVTADFIISQLLFLDAEDPKKDIKLFINSPGGSVTAGL 154

Query: 91  AIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASD 150
            IYD M+  K  +ST C+G AASMG+ LLSAG KG RF +PN R+++HQP G   G+AS+
Sbjct: 155 GIYDAMKLCKADVSTICLGLAASMGAFLLSAGSKGKRFCMPNGRVMIHQPLGTAGGKASE 214

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           +    +++   K +LN+I  +  GK  E+VE   DRD+ M+A EA ++G+VD+V+ 
Sbjct: 215 MSIRIREMSYHKIKLNKILSRITGKPLEQVEVDTDRDNFMNAWEAKEYGLVDEVID 270


>gi|146299462|ref|YP_001194053.1| endopeptidase Clp [Flavobacterium johnsoniae UW101]
 gi|146153880|gb|ABQ04734.1| Endopeptidase Clp [Flavobacterium johnsoniae UW101]
          Length = 224

 Score =  239 bits (610), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 87/207 (42%), Positives = 139/207 (67%), Gaps = 3/207 (1%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           M ++      +      L P ++E+        D++SRL+ +RI+F+   I+D +A ++ 
Sbjct: 20  MYYDKIISAMTPT---NLTPNIIEERQLNVSILDVFSRLMMDRIIFLGTGIDDQIANVVQ 76

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE+ +  K+I +Y+NSPGG V AG+ IYDTMQ+IKP ++T C G AASMG++LL 
Sbjct: 77  AQLLFLESADASKDIQIYLNSPGGSVYAGLGIYDTMQYIKPDVATICTGMAASMGAVLLC 136

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG  G R ALP++R+++HQPSGG  G A+D+E + ++++K+K  L  I  ++ G+++E V
Sbjct: 137 AGAAGKRSALPHSRVMIHQPSGGAQGVATDMEINLREMLKLKDELYHIISQHSGQSFERV 196

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMS 207
            K  +RD+ M A EA ++G++D+VL  
Sbjct: 197 HKDSERDYWMIADEAKEYGMIDEVLRR 223


>gi|326382826|ref|ZP_08204516.1| ATP-dependent Clp protease proteolytic subunit [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326198416|gb|EGD55600.1| ATP-dependent Clp protease proteolytic subunit [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 238

 Score =  239 bits (610), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 87/176 (49%), Positives = 122/176 (69%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           +  ++ RLL+ERI+F+  Q++D +A  +CAQ+L L AE+P K+I+LYINSPGG VTAGMA
Sbjct: 58  TDSVFERLLRERIIFLGTQVDDDIANRLCAQILLLAAEDPTKDINLYINSPGGSVTAGMA 117

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           I+DTMQ     ++T+ MG AASMG  LL+AG KG R ALP+ARI++HQPS G  G A+DI
Sbjct: 118 IFDTMQLAPCDVATYAMGMAASMGQFLLAAGAKGKRHALPHARIMMHQPSAGIGGTAADI 177

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
              A+     KR +N +  +  G+  E++E   DRD+  +A EA ++G VD V+ S
Sbjct: 178 AIQAEQFAATKREMNRLNAEFTGQPLEKIEADADRDNWFTAEEAKEYGFVDHVVTS 233


>gi|227548721|ref|ZP_03978770.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227079188|gb|EEI17151.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 190

 Score =  239 bits (610), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 89/172 (51%), Positives = 124/172 (72%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL+ERI+F+  Q++D +A  +CAQ+L L AE+P ++ISLYINSPGG VTAGMAIYD
Sbjct: 7   VYERLLRERIIFLGQQVDDEIANKLCAQILLLSAEDPTRDISLYINSPGGSVTAGMAIYD 66

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM++    I+T+ MG AASMG  LLS G KG R+ALP+ARI++HQPS G  G A+DI   
Sbjct: 67  TMKYSPCDIATYGMGLAASMGQFLLSGGTKGKRYALPHARIMMHQPSAGVGGTAADIAIQ 126

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           A+     KR + E+  ++ G+T+E++ K  DRD   +A EA ++G+VD V+ 
Sbjct: 127 AEQFAATKREMAELIAEHTGQTFEQITKDSDRDRWFTAQEAKEYGIVDHVIS 178


>gi|317124503|ref|YP_004098615.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Intrasporangium calvum DSM 43043]
 gi|315588591|gb|ADU47888.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Intrasporangium calvum DSM 43043]
          Length = 214

 Score =  238 bits (609), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 91/179 (50%), Positives = 126/179 (70%)

Query: 29  GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTA 88
           G     IY+RLLKERI+F+   + D  A  ICAQLL L AE+P+K+I LYINSPGG ++A
Sbjct: 14  GGLDDHIYNRLLKERIIFLGSDVRDDNANAICAQLLLLSAEDPEKDIWLYINSPGGSISA 73

Query: 89  GMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQA 148
           GMAI+DTM +I   ++T  MG AASMG  LLSAG  G R+A P+AR+++HQPSGG  G A
Sbjct: 74  GMAIFDTMNWIPNDVATVAMGMAASMGQFLLSAGTHGKRYATPHARVMMHQPSGGIGGTA 133

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           +DI+  A+ ++ +K+++ E+  ++ G+T E++EK  DRD   SA EA ++G VD V  S
Sbjct: 134 TDIKIQAEQMLYVKKQMAELIAEHTGQTIEQIEKDSDRDRWFSAQEAKEYGFVDHVFSS 192


>gi|297160512|gb|ADI10224.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           bingchenggensis BCW-1]
          Length = 200

 Score =  238 bits (609), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 96/189 (50%), Positives = 130/189 (68%), Gaps = 1/189 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P    +   G     +Y+RLL ERI+F+   ++D +A  I AQLL L AE P K+I+LY
Sbjct: 1   MPSAAGEPTFGGLGDQVYNRLLGERIIFLGQPVDDDIANKITAQLLLLAAE-PDKDINLY 59

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG +TAGMAIYDTMQ+IK  + T  MG AASMG  LLSAG  G RFALPNA IL+H
Sbjct: 60  INSPGGSITAGMAIYDTMQYIKNDVITIAMGLAASMGQFLLSAGTPGKRFALPNAEILIH 119

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPS G +G ASDI+ HA+ +++ KR++ ++   + G+T E++ +  DRD   SA EA  +
Sbjct: 120 QPSAGLAGSASDIKIHAEQLLRTKRKMADLTAFHTGQTVEQITRDSDRDRWFSAEEAKAY 179

Query: 199 GVVDKVLMS 207
           G+VD+V+ S
Sbjct: 180 GLVDEVIAS 188


>gi|255583777|ref|XP_002532641.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis]
 gi|223527632|gb|EEF29744.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis]
          Length = 334

 Score =  238 bits (609), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 80/176 (45%), Positives = 121/176 (68%)

Query: 31  RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGM 90
              D  + LL++RI+F+  Q++D  A  + +QLLFL+AE+P K+I L+INSPGG VTAG+
Sbjct: 89  EELDTTNMLLRQRIIFLGSQVDDMTADFVISQLLFLDAEDPTKDIKLFINSPGGSVTAGL 148

Query: 91  AIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASD 150
            IYD M+  K  +ST C+G AASMG+ LL+AG KG RF +PN R+++HQP G   G+A++
Sbjct: 149 GIYDAMKLCKADVSTICLGLAASMGAFLLAAGTKGKRFCMPNGRVMIHQPLGTAGGKATE 208

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           +    +++   K +LN+I  +  GK  E++E   DRD+ MSA EA ++G++D V+ 
Sbjct: 209 MSIRIREMNYHKIKLNKILSRATGKPVEQIEVDTDRDNFMSAWEAKEYGLIDVVID 264


>gi|320094140|ref|ZP_08025953.1| ATP-dependent Clp protease proteolytic subunit [Actinomyces sp.
           oral taxon 178 str. F0338]
 gi|319978942|gb|EFW10472.1| ATP-dependent Clp protease proteolytic subunit [Actinomyces sp.
           oral taxon 178 str. F0338]
          Length = 201

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 91/177 (51%), Positives = 124/177 (70%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLLKERI+++ G++ D  A  ICAQLL L AE+P ++I LYINSPGG VTAGMA+YD
Sbjct: 18  VYQRLLKERIIWLGGEVRDENANTICAQLLLLAAEDPDRDIYLYINSPGGSVTAGMAVYD 77

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ+IKP + T  MG AASMG  LL+AG  G R+  P+ R+LLHQP GG  G A++I  +
Sbjct: 78  TMQYIKPDVVTVGMGLAASMGQFLLTAGAPGKRYITPHTRVLLHQPLGGAGGSATEIRIN 137

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           A  I+ +K+ L EI  +  GK+ E++E   DRDH  +A EA ++G VD+++    +I
Sbjct: 138 ADLILGMKKELAEITAQRTGKSVEQIEADADRDHWFTAREALEYGFVDQLIEGPQEI 194


>gi|325107894|ref|YP_004268962.1| ATP-dependent Clp protease proteolytic subunit ClpP [Planctomyces
           brasiliensis DSM 5305]
 gi|324968162|gb|ADY58940.1| ATP-dependent Clp protease proteolytic subunit ClpP [Planctomyces
           brasiliensis DSM 5305]
          Length = 215

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 81/207 (39%), Positives = 130/207 (62%), Gaps = 4/207 (1%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           M F+  ++      +  +      +    +R   I   LL  RI+F+ G I D  A LI 
Sbjct: 4   MQFDPPSRDHVPGEYYNM----ANRAYTQQRQMGIGDLLLDNRIIFLDGPIHDASANLIV 59

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
            +LL+L++EN  +++ LYINSPGG VTA +AIYDTMQF+   ++T+C+G AAS G++L++
Sbjct: 60  MKLLYLQSENRHQDVHLYINSPGGSVTATLAIYDTMQFLDCDVATYCVGLAASGGAVLMA 119

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
            G KG R++LP++++++HQP G   GQ SDIE  AQ+I+  +  LN+I   + G+  E +
Sbjct: 120 GGAKGKRYSLPHSKMMIHQPFGQVGGQVSDIEIQAQEIINTRETLNQILADHTGQPIERI 179

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMS 207
            K  +RD  ++A EA ++G+VD+V+  
Sbjct: 180 AKDTERDRYLTAKEAKEYGLVDEVVEK 206


>gi|219115403|ref|XP_002178497.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217410232|gb|EEC50162.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 260

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 85/178 (47%), Positives = 120/178 (67%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
             D+ SRLLK+RI+ +   + D +A ++ AQLL+L  E+P K+I+LYINSPGG V+AG+A
Sbjct: 70  QLDVVSRLLKDRILLLGTDVNDEVANVLVAQLLYLANEDPNKDITLYINSPGGSVSAGLA 129

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYDTM+FI   + T C G AASMG+ LL AG  G R +LPNARI++HQP GG  GQA DI
Sbjct: 130 IYDTMKFIPCDVQTVCFGMAASMGAFLLGAGTPGKRKSLPNARIMIHQPLGGAQGQAQDI 189

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           E  A++I+  K  LN+       +  E++    DRD  M+  EA D+G++D+V+ ++ 
Sbjct: 190 EIQAKEILYTKALLNKFIADYTDQPEEKIAADCDRDFFMTPYEALDYGIIDEVIKTKT 247


>gi|86608099|ref|YP_476861.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|115311344|sp|Q2JHM1|CLPP1_SYNJB RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|86556641|gb|ABD01598.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. JA-2-3B'a(2-13)]
          Length = 203

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 97/197 (49%), Positives = 138/197 (70%), Gaps = 3/197 (1%)

Query: 19  VPMVVEQTNRGE--RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +       +   +  RL +ERI+F+   I+D +A  I   +L+L +++PQK+I 
Sbjct: 5   VPRVPYRLPGEPYSQWISLDDRLYQERILFIGEPIDDSLANTIVGVMLYLNSQDPQKDIV 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VTAGMAIYDTM  IKP I T C+GQAASMG+ LL+AG KG RFALP++RI+
Sbjct: 65  MYINSPGGSVTAGMAIYDTMNHIKPDIVTVCVGQAASMGAFLLAAGTKGKRFALPHSRIM 124

Query: 137 LHQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           LHQPS G   GQASDIE  A++ +++KRR+NEI  +  G+  E++E+ ++RD  +SA+EA
Sbjct: 125 LHQPSLGTIQGQASDIEIRARETLRVKRRMNEILAQTTGQPLEKIERDVERDFYLSATEA 184

Query: 196 CDWGVVDKVLMSRIDIE 212
             +G+VD+V+  R +  
Sbjct: 185 QAYGIVDRVIQERSEAM 201


>gi|83766223|dbj|BAE56366.1| unnamed protein product [Aspergillus oryzae]
          Length = 267

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 94/178 (52%), Positives = 137/178 (76%), Gaps = 4/178 (2%)

Query: 41  KERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           +ERI+ + G++++ M+  I AQLLFLEA+NPQK I LYINSPGG VTAG+AIYDTM +I 
Sbjct: 79  QERIICLNGEVDETMSASIVAQLLFLEADNPQKPIHLYINSPGGSVTAGLAIYDTMTYIA 138

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
            P+ST C+GQAASMGSLLL  G  G R+ LP++ I++HQPSGG+ GQA+DI  HA++I++
Sbjct: 139 SPVSTICVGQAASMGSLLLCGGHPGKRYCLPHSSIMIHQPSGGYFGQATDIAIHAKEILR 198

Query: 161 IKRRLNEIYVKN-CGK---TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           ++ +LN+IY ++  GK   + +E+EK ++RD+ M A EA + G+VD++L  R+  +E+
Sbjct: 199 VREQLNKIYKRHLTGKKELSLDEIEKLMERDYFMGAQEALEMGIVDEILDRRVRSKEE 256


>gi|226307302|ref|YP_002767262.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rhodococcus
           erythropolis PR4]
 gi|229493230|ref|ZP_04387022.1| Clp protease [Rhodococcus erythropolis SK121]
 gi|226186419|dbj|BAH34523.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rhodococcus
           erythropolis PR4]
 gi|229319961|gb|EEN85790.1| Clp protease [Rhodococcus erythropolis SK121]
          Length = 208

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 95/188 (50%), Positives = 127/188 (67%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P +   T     S  +Y RLL+ERI+F+  Q++D +A  +CAQ+L L AE+P ++ISLYI
Sbjct: 12  PAMTSATAGLNLSDSVYERLLRERIIFLGTQVDDDIANKLCAQILLLSAEDPTRDISLYI 71

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VTAGMAI+DTMQF +  I+TF MG AASMG  LLSAG KG R+ALP+ARI++HQ
Sbjct: 72  NSPGGSVTAGMAIFDTMQFAECDIATFGMGLAASMGQFLLSAGTKGKRYALPHARIMMHQ 131

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           PS G  G ASDI   A+     KR + E+  ++ G+T E++    DRD   +A EA ++G
Sbjct: 132 PSAGIGGSASDIAIMAEQFKHTKREMAELIAQHTGQTVEQITADSDRDRWFTAKEALEYG 191

Query: 200 VVDKVLMS 207
            VD V+  
Sbjct: 192 FVDHVVSR 199


>gi|313207344|ref|YP_004046521.1| endopeptidase clp [Riemerella anatipestifer DSM 15868]
 gi|312446660|gb|ADQ83015.1| Endopeptidase Clp [Riemerella anatipestifer DSM 15868]
 gi|315023239|gb|EFT36249.1| ATP-dependent Clp protease proteolytic subunit [Riemerella
           anatipestifer RA-YM]
 gi|325335197|gb|ADZ11471.1| Protease subunit of ATP-dependent Clp proteases [Riemerella
           anatipestifer RA-GD]
          Length = 224

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 94/204 (46%), Positives = 147/204 (72%), Gaps = 6/204 (2%)

Query: 11  SEDVFLG------LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLL 64
           + D ++G      L P ++E+        D++SRL+ +RI+F+   I+D +A ++ AQLL
Sbjct: 21  ATDQYMGTFNPTNLTPYIMEERRMNVAQMDVFSRLMMDRIIFLGTGIDDQVANIVTAQLL 80

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           FLE+ +P K+I +YINSPGG V AG+ IYDTMQ IKP ++T C G AASMG++LL AGEK
Sbjct: 81  FLESADPTKDIQIYINSPGGSVYAGLGIYDTMQIIKPDVATICTGMAASMGAVLLVAGEK 140

Query: 125 GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
           G R AL ++R+++HQPSGG  G ASD+E + ++++K+K+ L +I  ++ G++YE VEK+ 
Sbjct: 141 GKRSALKHSRVMIHQPSGGAQGVASDMEINLREMLKLKKELYDIISEHSGQSYEWVEKSS 200

Query: 185 DRDHIMSASEACDWGVVDKVLMSR 208
           DRD+ M++ EA ++G++D+VL  +
Sbjct: 201 DRDYWMTSEEAKEFGMIDEVLARK 224


>gi|262201987|ref|YP_003273195.1| endopeptidase Clp [Gordonia bronchialis DSM 43247]
 gi|262085334|gb|ACY21302.1| Endopeptidase Clp [Gordonia bronchialis DSM 43247]
          Length = 227

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 91/200 (45%), Positives = 135/200 (67%), Gaps = 2/200 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +E T  G+R YD Y++L +ERIVFV   I+  +A  + AQLL LE+++P ++I++
Sbjct: 28  ILPQFIEHTPNGQRQYDPYAKLFEERIVFVGTPIDQTVANDVMAQLLVLESQDPDRDITM 87

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V   +AIYDTMQ++   I T C+G+AAS  ++LL+ G  G R ALPNA IL+
Sbjct: 88  YINSPGGSVPDMLAIYDTMQYVHCDIVTVCLGEAASAAAILLAGGTPGKRAALPNATILI 147

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP   G + GQ SD+E  A +I +I+ RL+EI   + G+  E++ K  DRD+I++A  A
Sbjct: 148 HQPRTGGAYQGQVSDLEIQAAEIERIRNRLDEILAGHTGQPAEKIRKDTDRDNILTAEAA 207

Query: 196 CDWGVVDKVLMSRIDIEEKS 215
            ++G+VD+V   R    +KS
Sbjct: 208 KEYGIVDEVFEYRKKSLKKS 227


>gi|300859022|ref|YP_003784005.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686476|gb|ADK29398.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206721|gb|ADL11063.1| ATP-dependent Clp protease proteolytic subunit 2 [Corynebacterium
           pseudotuberculosis C231]
 gi|302331275|gb|ADL21469.1| ATP-dependent Clp protease proteolytic subunit 2 [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276964|gb|ADO26863.1| ATP-dependent Clp protease proteolytic subunit 2 [Corynebacterium
           pseudotuberculosis I19]
          Length = 199

 Score =  238 bits (608), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 90/176 (51%), Positives = 128/176 (72%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           S  +Y RLL+ERI+F+  Q++D +A  +CAQ+L L AE+P ++ISLYINSPGG VTAGMA
Sbjct: 17  SDSVYERLLRERIIFLGTQVDDEIANKLCAQILLLSAEDPNRDISLYINSPGGSVTAGMA 76

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYDTM++    I+T+ MG AASMG  LLS G KG R+ALP+ARI++HQPS G  G A+DI
Sbjct: 77  IYDTMKYSPCDIATYGMGLAASMGQFLLSGGTKGKRYALPHARIMMHQPSAGVGGTAADI 136

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
              A+   + KR + E+  ++ G+T+E++ K  DRD   +A++A ++G+VD V+ S
Sbjct: 137 AIQAEQFAQTKREMAELIAEHTGQTFEQITKDSDRDRWFTAAQAKEYGIVDHVIAS 192


>gi|238062482|ref|ZP_04607191.1| endopeptidase Clp [Micromonospora sp. ATCC 39149]
 gi|237884293|gb|EEP73121.1| endopeptidase Clp [Micromonospora sp. ATCC 39149]
          Length = 212

 Score =  238 bits (608), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 89/208 (42%), Positives = 142/208 (68%), Gaps = 3/208 (1%)

Query: 5   GCAKKDSEDVFLGLVPMVVEQTNRGERSYD--IYSRLLKERIVFVTGQIEDHMATLICAQ 62
           G +++      L ++   V   N G+ S+D  ++ +LL+ERI+F+  ++ D  A  ICAQ
Sbjct: 2   GGSRRLPAAWRLVMIRYDVRMRNGGQPSFDDQVFQQLLRERIIFLGTEVTDESANQICAQ 61

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           LL L AE+ +++I LYINSPGG V+AGMA+YDTM++++  ++T  +G A SMG  LL AG
Sbjct: 62  LLLLAAEDSERDIHLYINSPGGSVSAGMAVYDTMRYVRNDVATLALGMAGSMGQFLLCAG 121

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
             G R+ALP++RI++HQPSGGF G  +DI   A++++ +KR + E+  ++ G+T E++ +
Sbjct: 122 TAGKRYALPHSRIMMHQPSGGFGGTVADITIQAENMLHVKRTMQELIARHSGRTLEQIRQ 181

Query: 183 TLDRDHIMSASEACDWGVVDKVLMSRID 210
             DRD   +A EA ++G+VD+VL  R+D
Sbjct: 182 DWDRDRWFTAEEAREYGLVDQVLT-RVD 208


>gi|86605372|ref|YP_474135.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           JA-3-3Ab]
 gi|115311343|sp|Q2JWJ1|CLPP1_SYNJA RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|86553914|gb|ABC98872.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP
           [Synechococcus sp. JA-3-3Ab]
          Length = 203

 Score =  238 bits (608), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 95/197 (48%), Positives = 139/197 (70%), Gaps = 3/197 (1%)

Query: 19  VPMVVEQTNRGE--RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +       +   +  RL +ERI+F+   I+D++A  I   +L+L +++PQK+I 
Sbjct: 5   VPRVPYRLPGEPYSQWISLDDRLYQERILFIGEPIDDNLANTIVGVMLYLNSQDPQKDIV 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VTAGMAIYDTM  +KP I T C+GQAASMG+ LL+AG KG RFALP++RI+
Sbjct: 65  MYINSPGGSVTAGMAIYDTMNHVKPDIVTVCVGQAASMGAFLLAAGTKGKRFALPHSRIM 124

Query: 137 LHQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           LHQPS G   GQASDIE  A++ +++KRR+NE+  +  G+  E++E+ ++RD  +SA+EA
Sbjct: 125 LHQPSLGMIQGQASDIEIRARETLRVKRRMNELLAQMTGQPLEKIERDVERDFYLSATEA 184

Query: 196 CDWGVVDKVLMSRIDIE 212
             +G+VD+V+  R +  
Sbjct: 185 QAYGIVDRVIQERSEAM 201


>gi|327404286|ref|YP_004345124.1| ATP-dependent Clp protease proteolytic subunit ClpP [Fluviicola
           taffensis DSM 16823]
 gi|327319794|gb|AEA44286.1| ATP-dependent Clp protease proteolytic subunit ClpP [Fluviicola
           taffensis DSM 16823]
          Length = 222

 Score =  238 bits (608), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 92/190 (48%), Positives = 137/190 (72%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
             L P ++E+ +      D++SRL+ +RI+F+   I D +A +I AQLLFLE+ + +K+I
Sbjct: 28  SSLTPYIIEERHMNMTQMDVFSRLMMDRIIFLGTGINDQVANIINAQLLFLESVDAKKDI 87

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +Y+NSPGG V AG+ IYDTMQ+IKP ++T C G AASMG++L+ AG +G R AL +AR+
Sbjct: 88  QIYLNSPGGSVYAGLGIYDTMQYIKPDVATICTGMAASMGAVLMCAGAEGKRSALKHARV 147

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQASDIE  A++I K+K+ L +I   +  +TYE+V    DRD+ M+A+EA
Sbjct: 148 MIHQPLGGAQGQASDIEITAREIQKLKKELYDIIATHSKQTYEKVWADSDRDYWMTAAEA 207

Query: 196 CDWGVVDKVL 205
            D+G+VD++L
Sbjct: 208 KDYGMVDEIL 217


>gi|302556967|ref|ZP_07309309.1| Clp protease [Streptomyces griseoflavus Tu4000]
 gi|302474585|gb|EFL37678.1| Clp protease [Streptomyces griseoflavus Tu4000]
          Length = 200

 Score =  238 bits (608), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 96/192 (50%), Positives = 138/192 (71%), Gaps = 1/192 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVE+T RGERSYD++SRLL ERIVF+  +I+D +A ++ AQLL LE+  P+ EI+LY
Sbjct: 6   IPNVVERTPRGERSYDVFSRLLSERIVFLGTEIDDGVANVVIAQLLHLESAAPESEIALY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  T+ MAIYDTM F++ PISTFC+GQAAS  ++LL+ G+ G RF L +AR+LL 
Sbjct: 66  INSPGGSFTSLMAIYDTMTFVQAPISTFCVGQAASTAAVLLAGGDPGRRFVLEHARVLLG 125

Query: 139 QP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP SGG  G ASD+   A+++V+I+ ++ E+  ++       +   +DRD + +A EA  
Sbjct: 126 QPASGGTRGTASDLALRAREMVRIRSQVEEVLARHTHHDPATLRADMDRDKVFTAREAVS 185

Query: 198 WGVVDKVLMSRI 209
           +G+ D+VL  R+
Sbjct: 186 YGLADEVLARRL 197


>gi|284030228|ref|YP_003380159.1| endopeptidase Clp [Kribbella flavida DSM 17836]
 gi|283809521|gb|ADB31360.1| Endopeptidase Clp [Kribbella flavida DSM 17836]
          Length = 207

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 94/196 (47%), Positives = 123/196 (62%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P        G     IY RLL  RI+F+  ++ D  A  ICAQ+L L AE+P K+I LYI
Sbjct: 9   PTAAGGNGSGGLDDHIYQRLLSSRIIFLGSEVRDDNANAICAQMLLLNAEDPNKDIWLYI 68

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V AGMAIYDTMQ+I   ++T  MG AASMG  LL AG K  RFALP+ARI++HQ
Sbjct: 69  NSPGGSVDAGMAIYDTMQYISNDVATVGMGLAASMGQFLLCAGAKNKRFALPHARIMMHQ 128

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           PSGG  G ASDI+  AQ  + IK +L ++  ++ G+  E+VE   DRD   +A +A ++G
Sbjct: 129 PSGGMGGTASDIKIQAQQSLHIKAQLFKLIAEHTGQALEQVENDADRDRWFTADQAKEYG 188

Query: 200 VVDKVLMSRIDIEEKS 215
            +D V+ S   +   S
Sbjct: 189 FIDHVVASAAQLSSGS 204


>gi|330040589|ref|XP_003239964.1| ATP-dependent, proteolytic subunit [Cryptomonas paramecium]
 gi|327206890|gb|AEA39066.1| ATP-dependent, proteolytic subunit [Cryptomonas paramecium]
          Length = 232

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 89/189 (47%), Positives = 133/189 (70%), Gaps = 2/189 (1%)

Query: 19  VPMVVEQTNRG--ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +          DIY+RL +ERI+F+  +I+D +A  I A +L+L++E+  K I 
Sbjct: 42  VPKVAYRIPGSSSADWIDIYNRLYRERIIFLGQEIDDEIANQIIAVMLYLDSESNSKPIY 101

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG V +G+A+YDT+Q +K  + T  +G AASM S +L++G+KG R ALP++R++
Sbjct: 102 LYINSPGGSVISGLALYDTIQHVKSEVITVNIGLAASMASFILASGKKGKRLALPHSRVM 161

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQASDIE  AQ I+KIK+ L E Y +  GK YE+V + +DRD+ MS+ EA 
Sbjct: 162 IHQPMGGAHGQASDIEVEAQQILKIKKTLTEDYARMTGKPYEKVLQDMDRDNFMSSHEAL 221

Query: 197 DWGVVDKVL 205
           ++G++D+++
Sbjct: 222 EYGLIDRII 230


>gi|229821079|ref|YP_002882605.1| Endopeptidase Clp [Beutenbergia cavernae DSM 12333]
 gi|229566992|gb|ACQ80843.1| Endopeptidase Clp [Beutenbergia cavernae DSM 12333]
          Length = 213

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 91/201 (45%), Positives = 130/201 (64%), Gaps = 9/201 (4%)

Query: 16  LGLVPMVVEQTNRGERSYD---------IYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
           +  +P  + Q        D         IY+RLLKERI+++  ++ D  A  IC Q++ L
Sbjct: 1   MSDMPQAISQGAPRAAGSDNQSFALGDHIYNRLLKERIIWLGSEVRDDNANQICGQMMLL 60

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
            AE+P K+I LYINSPGG VTAGMAIYDTMQ+++P ++T  MG AASMG  LL++G KG 
Sbjct: 61  AAEDPTKDIWLYINSPGGSVTAGMAIYDTMQYVQPDVATVAMGMAASMGQFLLASGAKGK 120

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           R+A P+AR+++HQPSGG  G A+DI  +A+ I+ +KR + E+  +  GKT E+V    DR
Sbjct: 121 RYATPHARVMMHQPSGGIGGTATDIRINAELILHMKRVMAELTAEQTGKTVEQVNADADR 180

Query: 187 DHIMSASEACDWGVVDKVLMS 207
           D   +A EA ++G +D V+  
Sbjct: 181 DRWFTAEEAREYGFIDHVVTH 201


>gi|21225557|ref|NP_631336.1| ATP-dependent Clp protease proteolytic subunit 2 [Streptomyces
           coelicolor A3(2)]
 gi|256783423|ref|ZP_05521854.1| ATP-dependent Clp protease proteolytic subunit 2 [Streptomyces
           lividans TK24]
 gi|289767299|ref|ZP_06526677.1| Clp protease [Streptomyces lividans TK24]
 gi|18203601|sp|Q9X7S0|CLPP4_STRCO RecName: Full=Putative ATP-dependent Clp protease proteolytic
           subunit-like; AltName: Full=Endopeptidase Clp-like
 gi|4835315|emb|CAB42937.1| putative ATP-dependent Clp protease proteolytic subunit 2
           [Streptomyces coelicolor A3(2)]
 gi|289697498|gb|EFD64927.1| Clp protease [Streptomyces lividans TK24]
          Length = 200

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 92/192 (47%), Positives = 137/192 (71%), Gaps = 1/192 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVE+T +GERSYD++SRLL ERI+F+  +I+D +A ++ AQLL LE+  P+ EI++Y
Sbjct: 6   IPNVVERTPQGERSYDVFSRLLSERIIFLGTEIDDGVANVVIAQLLHLESSAPESEIAVY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  T+ MAIYDTM F++ PISTFC+GQAAS  ++LL+ G+ G RF L +AR+LL 
Sbjct: 66  INSPGGSFTSLMAIYDTMTFVQAPISTFCVGQAASTAAVLLAGGDPGRRFVLEHARVLLG 125

Query: 139 QP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP SGG  G  SD+   A+++V+I+ ++ E+  ++       +   +DRD + +A EA  
Sbjct: 126 QPASGGRQGTVSDLALQAKEMVRIRSQVEEVLARHTHHDVATLRADMDRDKVFTAQEAVA 185

Query: 198 WGVVDKVLMSRI 209
           +G+ D+VL  R+
Sbjct: 186 YGLADEVLARRL 197


>gi|227504047|ref|ZP_03934096.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           striatum ATCC 6940]
 gi|227199377|gb|EEI79425.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           striatum ATCC 6940]
          Length = 199

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 87/173 (50%), Positives = 126/173 (72%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL+ERI+F+  Q++D +A  +CAQ+L L AE+P ++ISLYINSPGG VTAGMAIYD
Sbjct: 20  VYERLLRERIIFLGTQVDDEIANKLCAQILLLSAEDPTRDISLYINSPGGSVTAGMAIYD 79

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM++    I+T+ MG AASMG  LLS G KG R+ALP+ARI++HQPS G  G A+DI   
Sbjct: 80  TMKYSPCDIATYGMGLAASMGQFLLSGGTKGKRYALPHARIMMHQPSAGVGGTAADIAIQ 139

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+   + KR + ++  ++ G+++E++ K  DRD   +A +A ++G+VD V+ S
Sbjct: 140 AEQFAQTKREMAQLIAEHTGQSFEQITKDSDRDRWFTAQQAKEYGIVDHVIES 192


>gi|300778994|ref|ZP_07088852.1| ATP-dependent Clp protease proteolytic subunit [Chryseobacterium
           gleum ATCC 35910]
 gi|300504504|gb|EFK35644.1| ATP-dependent Clp protease proteolytic subunit [Chryseobacterium
           gleum ATCC 35910]
          Length = 228

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 96/207 (46%), Positives = 145/207 (70%), Gaps = 6/207 (2%)

Query: 12  EDVFLGL------VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF 65
            D ++G+       P ++E+        D++SRL+ +RI+F+   I+D +A ++ AQLLF
Sbjct: 22  TDQYMGMYGPTNLTPYIMEERRLNVAQMDVFSRLMMDRIIFLGTGIDDQVANIVTAQLLF 81

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           LE+ +P K+I +YINSPGG V AG+ IYDTMQ IKP ++T C G AASMG++LL AGEKG
Sbjct: 82  LESADPSKDIQIYINSPGGSVYAGLGIYDTMQIIKPDVATICTGMAASMGAVLLVAGEKG 141

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
            R AL ++R+++HQPSGG  G ASD+E + ++++K+K+ L EI   + G+TYE VEK+ D
Sbjct: 142 KRSALKHSRVMIHQPSGGAQGVASDMEINLREMLKLKQELYEIIAHHSGQTYEWVEKSSD 201

Query: 186 RDHIMSASEACDWGVVDKVLMSRIDIE 212
           RD+ M++ EA  +G+VD+VL    + +
Sbjct: 202 RDYWMTSEEAKGYGMVDEVLQRSTEKK 228


>gi|294629346|ref|ZP_06707906.1| Clp protease [Streptomyces sp. e14]
 gi|292832679|gb|EFF91028.1| Clp protease [Streptomyces sp. e14]
          Length = 219

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 98/208 (47%), Positives = 136/208 (65%), Gaps = 2/208 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYD-IYSRLLKERIVFVTGQIEDHMATLI 59
           M   G   + +      L+P    + + G    D +Y+RLL ERI+F+   ++D +A  I
Sbjct: 1   MRRPGAVVRRAGGYVTNLMPSAAGEPSIGGGLGDQVYNRLLNERIIFLGQPVDDDIANKI 60

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
            AQLL L A+ P K+I LYINSPGG +TAGMAIYDTMQ+IK  + T  MG AASMG  LL
Sbjct: 61  TAQLLLLAAD-PDKDIYLYINSPGGSITAGMAIYDTMQYIKNDVVTIAMGLAASMGQFLL 119

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
           SAG  G RFALPNA IL+HQPS G +G ASDI+ HA+ ++  K+R+ E+  ++ G+T+E+
Sbjct: 120 SAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTAQHTGQTFEQ 179

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVLMS 207
           + +  DRD    A EA ++G++D V+ S
Sbjct: 180 ITRDSDRDRWFDAYEAKEYGLIDDVITS 207


>gi|325000576|ref|ZP_08121688.1| ATP-dependent Clp protease proteolytic subunit [Pseudonocardia sp.
           P1]
          Length = 227

 Score =  238 bits (607), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 90/192 (46%), Positives = 125/192 (65%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           LG  P +   T+    S  +Y RLL++RI+ +  Q++  ++  I AQ+L L AE+P+K+I
Sbjct: 24  LGSGPQMRAATHSMSLSDSVYERLLQQRIIVLGQQVDAEISNRIAAQMLLLAAEDPEKDI 83

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VT GMA++DTM  I   +ST  MG AASMG  LLSAG  G RFALP+ARI
Sbjct: 84  ELYINSPGGSVTDGMAVFDTMNLIPCDVSTTAMGMAASMGQFLLSAGTPGKRFALPHARI 143

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  G  +DI   A+ + K KR + E+  ++ G++ E +E+  DRD   +A EA
Sbjct: 144 MMHQPSGGIGGTEADITILAEQMRKTKREMAELIAQHTGQSLETIERDSDRDRWFTAEEA 203

Query: 196 CDWGVVDKVLMS 207
            D+G VD V+  
Sbjct: 204 KDYGFVDHVVTH 215


>gi|319947981|ref|ZP_08022158.1| ATP-dependent Clp protease proteolytic subunit [Dietzia cinnamea
           P4]
 gi|319438327|gb|EFV93270.1| ATP-dependent Clp protease proteolytic subunit [Dietzia cinnamea
           P4]
          Length = 213

 Score =  238 bits (607), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 85/173 (49%), Positives = 125/173 (72%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL+ERI+F+  Q++D +A  +CAQ+L L AE+P ++I++YINSPGG VTAGMAIYD
Sbjct: 31  VYERLLQERIIFLGSQVDDDIANRLCAQMLLLAAEDPSRDIAMYINSPGGSVTAGMAIYD 90

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQF++  ++T+ MG AASMG  LL+AG KG R+ALP+A+I++HQPS G  G A+DI   
Sbjct: 91  TMQFVECDVATYGMGLAASMGQFLLAAGTKGKRYALPHAKIMMHQPSAGVGGSAADIAIQ 150

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+     KR + E+   + G+++E+V +  DRD   +A +A ++G VD V+  
Sbjct: 151 AEQFAATKREMAELIAFHTGQSFEQVTEDSDRDRWFTAEQAKEYGFVDHVISR 203


>gi|224013265|ref|XP_002295284.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220969007|gb|EED87350.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 198

 Score =  238 bits (607), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 88/181 (48%), Positives = 129/181 (71%)

Query: 29  GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTA 88
           G    D+ SRLL++RI+ +   ++D +A ++ AQLL+L  E+P K+I+LYINSPGG V+A
Sbjct: 7   GTSQKDVLSRLLQDRIILLGQGVDDEIANVLVAQLLYLANEDPTKDITLYINSPGGSVSA 66

Query: 89  GMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQA 148
           GMAIYDTMQ++   +ST C G AASMG+ LL AG  G R ALPNARI++HQP GG  GQA
Sbjct: 67  GMAIYDTMQYVPCDVSTVCFGMAASMGAFLLGAGAPGKRRALPNARIMIHQPLGGAQGQA 126

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           +DIE  A++I+ I+  LN    + C +  +++E   DRD  M+A EA D+G++D++++++
Sbjct: 127 ADIEIQAKEILFIREVLNTYIAEYCDQPKDKIEADCDRDFFMTAEEAVDYGIIDEMIVTK 186

Query: 209 I 209
            
Sbjct: 187 T 187


>gi|116072309|ref|ZP_01469576.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           BL107]
 gi|116064831|gb|EAU70590.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           BL107]
          Length = 184

 Score =  238 bits (607), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 90/182 (49%), Positives = 132/182 (72%), Gaps = 1/182 (0%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           ER  DIY+RL  ERI+F+  ++ D +A  + AQ+L+L++E+  K I LYINSPGG VTAG
Sbjct: 2   ERWVDIYTRLGVERILFLGSEVNDGIANSLVAQMLYLDSEDSSKPIYLYINSPGGSVTAG 61

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQA 148
           +AI+DT+Q++K  + T C+G AASMG+ LL+AG KG R ALP++RI++HQP GG    QA
Sbjct: 62  LAIFDTIQYVKSEVVTICVGLAASMGAFLLAAGTKGKRVALPHSRIMIHQPLGGTSRRQA 121

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           SDIE  A++I+++K  LN       G+T+E++EK  DRD+ +SA EA D+G++D+V+   
Sbjct: 122 SDIEIEAREILRMKDMLNHSLADMSGQTFEKIEKDTDRDYFLSAQEAMDYGLIDRVISHP 181

Query: 209 ID 210
            +
Sbjct: 182 NE 183


>gi|226360502|ref|YP_002778280.1| ATP-dependent Clp protease proteolytic subunit [Rhodococcus opacus
           B4]
 gi|226238987|dbj|BAH49335.1| ATP-dependent Clp protease proteolytic subunit [Rhodococcus opacus
           B4]
          Length = 208

 Score =  238 bits (607), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 92/188 (48%), Positives = 127/188 (67%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P +   T     S  +Y RLL+ERI+F+  Q++D +A  +CAQ+L L AE+P ++ISLYI
Sbjct: 12  PAMTSATAGLNLSDSVYERLLRERIIFLGTQVDDDIANKLCAQILLLSAEDPSRDISLYI 71

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V+AGMAI+DTMQF +  ++TF MG AASMG  LLSAG KG R+ALP+ARI++HQ
Sbjct: 72  NSPGGSVSAGMAIFDTMQFAECDVATFGMGLAASMGQFLLSAGAKGKRYALPHARIMMHQ 131

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           PS G  G ASDI   A+     KR + E+  ++ G+T E++    DRD   +A +A ++G
Sbjct: 132 PSAGIGGTASDIAIMAEQFAHTKREMAELIAEHTGQTVEQITADSDRDRWFTAQQALEYG 191

Query: 200 VVDKVLMS 207
            VD V+  
Sbjct: 192 FVDHVVSR 199


>gi|161833700|ref|YP_001597896.1| ATP-dependent Clp protease, proteolytic subunit [Candidatus Sulcia
           muelleri GWSS]
 gi|293977810|ref|YP_003543240.1| protease subunit of ATp-dependent Clp protease [Candidatus Sulcia
           muelleri DMIN]
 gi|152206190|gb|ABS30500.1| ATP-dependent Clp protease, proteolytic subunit [Candidatus Sulcia
           muelleri GWSS]
 gi|292667741|gb|ADE35376.1| Protease subunit of ATP-dependent Clp protease [Candidatus Sulcia
           muelleri DMIN]
          Length = 219

 Score =  238 bits (607), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 84/194 (43%), Positives = 135/194 (69%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           ++    + P ++E+        D++SRL+ +RI+F+   I+D +A +I AQLLFL++ + 
Sbjct: 25  DNYIKSMTPYIMEERKYNVSQMDVFSRLMMDRIIFLGTPIDDQIANIIQAQLLFLQSLDS 84

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K I +YINSPGG V +G+ IYDTMQ +KP IST C G AASM ++LL +G+KG R  L 
Sbjct: 85  NKGIQIYINSPGGSVYSGLGIYDTMQILKPEISTICTGIAASMAAILLCSGKKGKRSILK 144

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           ++R+L+HQP G   GQ+SD+E   ++I+K+K  LN+I  ++  + +E+V+K  DRD+ M+
Sbjct: 145 HSRVLIHQPIGYAKGQSSDMEITVREILKLKEELNKIISEHTNQPFEKVQKDSDRDYWMT 204

Query: 192 ASEACDWGVVDKVL 205
           + EA ++G+VD++L
Sbjct: 205 SEEAKNYGIVDEIL 218


>gi|257055262|ref|YP_003133094.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Saccharomonospora viridis DSM 43017]
 gi|256585134|gb|ACU96267.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Saccharomonospora viridis DSM 43017]
          Length = 197

 Score =  238 bits (607), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 96/185 (51%), Positives = 121/185 (65%), Gaps = 1/185 (0%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           +  +Y RLL+ERIV +  ++ D +A  I AQLL L AE+P  +I  YINSPGG VTAG A
Sbjct: 14  TDSVYERLLQERIVVLGSEVNDEVANRITAQLLLLAAEDPHSDIRFYINSPGGSVTAGFA 73

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYDTMQ I+P ++T+ MG AASMG  LLS+G  G R+ALP+ARIL+HQPS G  G ASDI
Sbjct: 74  IYDTMQLIEPDVATYAMGLAASMGQFLLSSGTPGKRYALPHARILMHQPSAGVGGTASDI 133

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
              A+   K K  L  I  +  G+T E++ K  DRD   +ASEA D+G VD VL  R + 
Sbjct: 134 AIQAEVFSKWKHELARITAEQTGQTVEQILKDSDRDRWFTASEAKDYGFVDHVLT-RDNP 192

Query: 212 EEKSK 216
             KS 
Sbjct: 193 APKSN 197


>gi|222152607|ref|YP_002561782.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           uberis 0140J]
 gi|254763804|sp|B9DTU8|CLPP_STRU0 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|222113418|emb|CAR41093.1| putative ATP-dependent Clp protease proteolytic subunit
           [Streptococcus uberis 0140J]
          Length = 196

 Score =  238 bits (607), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 97/192 (50%), Positives = 140/192 (72%), Gaps = 2/192 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  I AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  L+
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYLI 120

Query: 138 HQPSGGF--SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP GG     Q +D+   A+ ++K ++RL +I   N GKT +++ K  +RD+ M A E 
Sbjct: 121 HQPMGGTGSGTQQTDMAIVAEQLLKTRKRLEKILSDNSGKTIKQIHKDAERDYWMDAKET 180

Query: 196 CDWGVVDKVLMS 207
            ++G +D ++ +
Sbjct: 181 LEYGFIDAIMEN 192


>gi|296118749|ref|ZP_06837325.1| Clp protease [Corynebacterium ammoniagenes DSM 20306]
 gi|295968238|gb|EFG81487.1| Clp protease [Corynebacterium ammoniagenes DSM 20306]
          Length = 199

 Score =  237 bits (606), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 91/191 (47%), Positives = 126/191 (65%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +   P +   +        +Y RLL ERI+F+  Q++D +A  +CAQ+L L AE+P ++I
Sbjct: 1   MSDKPQMTSPSAGMNLGDSVYERLLSERIIFLGTQVDDEIANKLCAQILLLSAEDPTRDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG VTAGMAIYDTM++    I T+ MG AASMG  LLS G KG RFALP+ARI
Sbjct: 61  SLYINSPGGSVTAGMAIYDTMKYSPCDIRTYGMGLAASMGQFLLSGGTKGKRFALPHARI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPS G  G ASDI   A+     KR + E+  ++ G+T+E++ K  DRD   +A +A
Sbjct: 121 MMHQPSAGVGGTASDIAIQAEQFAATKREMAELIAEHTGQTFEQITKDSDRDRWFTADQA 180

Query: 196 CDWGVVDKVLM 206
            ++G+VD V+ 
Sbjct: 181 KEYGIVDHVID 191


>gi|313675245|ref|YP_004053241.1| ATP-dependent clp protease proteolytic subunit clpp [Marivirga
           tractuosa DSM 4126]
 gi|312941943|gb|ADR21133.1| ATP-dependent Clp protease proteolytic subunit ClpP [Marivirga
           tractuosa DSM 4126]
          Length = 222

 Score =  237 bits (606), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 92/187 (49%), Positives = 134/187 (71%)

Query: 22  VVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS 81
           V+E+     R  D++SRL+ +RI+F+  Q++D++A +I AQLLFL++ + +K+ISLYINS
Sbjct: 36  VIEERPTNFREIDVFSRLIMDRIIFLGMQVDDNIANVITAQLLFLQSVDAKKDISLYINS 95

Query: 82  PGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
           PGG V AG+ IYDTM +I P + T C G AASMG++LL+ G +  R ALP+ARI++HQP 
Sbjct: 96  PGGSVYAGLGIYDTMHYISPDVGTICTGLAASMGAVLLAGGAEKKRSALPHARIMIHQPM 155

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            G  GQASD+E   +  + +K  L  I  K+ GKTY++VEK  DRD  M ASEA ++G++
Sbjct: 156 SGMQGQASDMEISLKQTLSVKEDLYNILSKHSGKTYKQVEKDSDRDFWMRASEAKEYGLI 215

Query: 202 DKVLMSR 208
           D+VL+ +
Sbjct: 216 DEVLVRK 222


>gi|119953393|ref|YP_945602.1| ATP-dependent Clp protease proteolytic subunit [Borrelia turicatae
           91E135]
 gi|119862164|gb|AAX17932.1| ATP-dependent Clp protease proteolytic subunit [Borrelia turicatae
           91E135]
          Length = 199

 Score =  237 bits (606), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 95/196 (48%), Positives = 139/196 (70%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
            +    LVP VVE T   ER +DIYSRLL++RI+F++G+I D  A  + AQLLFLE+E+ 
Sbjct: 3   REYMHNLVPTVVEHTGNYERVFDIYSRLLRDRIIFLSGEINDVRADTVIAQLLFLESEDS 62

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+I +YINSPGG +TAG+AIYDTMQ+IKP + T C+GQAASM + LL+ G  G R +L 
Sbjct: 63  KKDIYVYINSPGGSITAGLAIYDTMQYIKPDVRTICIGQAASMAAFLLAGGAIGKRESLS 122

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
            +RI++HQP GG  GQASDI   A +I+++KR + +I     G + E++   ++RD+ M+
Sbjct: 123 YSRIMIHQPWGGIGGQASDISIQANEIIRLKRLIIDIMSDKIGVSKEKLSLDIERDYFMT 182

Query: 192 ASEACDWGVVDKVLMS 207
             +A D+G++D +L+ 
Sbjct: 183 PKDALDYGIIDGILVR 198


>gi|212550900|ref|YP_002309217.1| ATP-dependent Clp protease protease subunit [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
 gi|212549138|dbj|BAG83806.1| ATP-dependent Clp protease protease subunit [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
          Length = 222

 Score =  237 bits (606), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 89/190 (46%), Positives = 134/190 (70%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  +I+D+ A+++ AQLL+L++  P K+IS+YI
Sbjct: 33  PTIIEERQLNVAQMDVFSRLMMDRIIFLGTRIDDYSASVVQAQLLYLDSAEPGKDISIYI 92

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V AG  IYDTMQFI   ++T C G AASM ++LL AG KG R AL ++R+++HQ
Sbjct: 93  NSPGGTVYAGYGIYDTMQFISSDVTTICTGMAASMAAVLLVAGTKGKRSALCHSRVMIHQ 152

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I+KIK+ +  I  ++ G++YE+V K  DRD  M+A EA  +G
Sbjct: 153 PLGGAQGQASDIEITAREILKIKKEIYTIIAEHSGQSYEQVLKDGDRDFWMNAEEALAYG 212

Query: 200 VVDKVLMSRI 209
           ++D +L  + 
Sbjct: 213 MIDGILTKKK 222


>gi|68535616|ref|YP_250321.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           jeikeium K411]
 gi|109878151|sp|Q4JWV4|CLPP1_CORJK RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|68263215|emb|CAI36703.1| ATP-dependent Clp protease proteolytic subunit 1 [Corynebacterium
           jeikeium K411]
          Length = 188

 Score =  237 bits (606), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 90/176 (51%), Positives = 124/176 (70%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL+ERI+F+  Q++D +A  +CAQ+L L AE+P ++ISLYINSPGG VTAGMAIYD
Sbjct: 12  VYERLLRERIIFLGSQVDDEIANELCAQILLLSAEDPTRDISLYINSPGGSVTAGMAIYD 71

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM++    I+T+ MG AASMG  LLSAG KG R+ALP+ARI++HQPS G  G A+DI   
Sbjct: 72  TMKYAPCDIATYGMGLAASMGQFLLSAGTKGKRYALPHARIMMHQPSAGVGGTAADIAIQ 131

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           A+     KR + E+  +  G+T E++ K  DRD   +A +A ++G VD V+ S  +
Sbjct: 132 AEQFAYTKREMAELIAEFTGQTVEQITKDSDRDRWFTAQQAKEYGFVDHVITSAKE 187


>gi|239979447|ref|ZP_04701971.1| ATP dependent Clp protease proteolytic subunit 1 [Streptomyces
           albus J1074]
          Length = 201

 Score =  237 bits (606), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 92/185 (49%), Positives = 129/185 (69%), Gaps = 1/185 (0%)

Query: 28  RGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVT 87
            G     +Y+RLL ERI+F+   ++D +A  I AQLL L ++ P K+I+LYINSPGG ++
Sbjct: 11  GGGLGDQVYNRLLGERIIFLGQPVDDDIANKITAQLLLLASD-PDKDINLYINSPGGSIS 69

Query: 88  AGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQ 147
           AGMAIYDTMQFIK  + T  MG AASMG  LLSAG  G RFALPNA IL+HQPS G +G 
Sbjct: 70  AGMAIYDTMQFIKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGS 129

Query: 148 ASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           ASDI+ HA+ ++  K+R+ E+   + G++ E++ +  DRD   SA EA ++G++D+V+ S
Sbjct: 130 ASDIKIHAERLLHTKKRMAELTAFHTGQSVEQITRDSDRDRWFSADEAKEYGLIDEVIAS 189

Query: 208 RIDIE 212
             ++ 
Sbjct: 190 AANVP 194


>gi|86739912|ref|YP_480312.1| ClpP1 peptidase. Serine peptidase. MEROPS family S14 [Frankia sp.
           CcI3]
 gi|108935915|sp|Q2JDQ9|CLPP1_FRASC RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|86566774|gb|ABD10583.1| ATP-dependent Clp protease proteolytic subunit ClpP [Frankia sp.
           CcI3]
          Length = 213

 Score =  237 bits (606), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 90/190 (47%), Positives = 127/190 (66%), Gaps = 2/190 (1%)

Query: 27  NRGERSYD--IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG 84
            +G  ++D  +++RLL  RIVF+   +ED +A  ICAQLL L AE+P ++I LYINSPGG
Sbjct: 20  GQGGPAFDDQVFNRLLANRIVFLGSVVEDSIANAICAQLLLLNAEDPTRDIFLYINSPGG 79

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
            V+AGMAIYDTMQF++  ++T  +G AASMG  LL AG  G R++LP+ARI++HQPSGG 
Sbjct: 80  SVSAGMAIYDTMQFVENDVATVSLGLAASMGQFLLCAGASGKRYSLPHARIMMHQPSGGI 139

Query: 145 SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            G ASDI   A+ ++  KR + E    + G+  E++E+  DRD   +A EA D+G VD V
Sbjct: 140 GGTASDIAIQAEQMLYTKRMMQERIAFHTGQPIEQIERDSDRDRWFTAEEAKDYGFVDHV 199

Query: 205 LMSRIDIEEK 214
           +     +  +
Sbjct: 200 VQQARQVPSE 209


>gi|297153499|gb|ADI03211.1| ATP-dependent Clp protease proteolytic subunit 2 [Streptomyces
           bingchenggensis BCW-1]
          Length = 200

 Score =  237 bits (606), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 93/192 (48%), Positives = 140/192 (72%), Gaps = 1/192 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP V+E+T +GERSYD++SRLL ERI+F+  +I+D +A ++ AQLL LE+ NP++EIS+Y
Sbjct: 6   VPYVIERTAQGERSYDVFSRLLNERIIFLGTEIDDGVANVVIAQLLHLESANPEREISIY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           +NSPGG  T+ MAIYDTM F++ PISTFC+GQAAS  ++LL+ G+ G RF L +AR+LL 
Sbjct: 66  LNSPGGSFTSLMAIYDTMTFVQAPISTFCVGQAASTAAVLLAGGDPGRRFVLQHARVLLG 125

Query: 139 QP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP SGG  G  SD+   A+++V+I+ ++ E+  ++       +   +DRD +++A EA  
Sbjct: 126 QPASGGRQGTVSDLSLAAKEMVRIRSQVEEVLSRHTHHDVATLRADMDRDKVLTAEEAVA 185

Query: 198 WGVVDKVLMSRI 209
           +G+ D+VL  R+
Sbjct: 186 YGLADEVLSRRL 197


>gi|329937607|ref|ZP_08287126.1| ATP-dependent Clp protease proteolytic subunit 2 [Streptomyces
           griseoaurantiacus M045]
 gi|329303006|gb|EGG46894.1| ATP-dependent Clp protease proteolytic subunit 2 [Streptomyces
           griseoaurantiacus M045]
          Length = 202

 Score =  237 bits (606), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 94/192 (48%), Positives = 139/192 (72%), Gaps = 1/192 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP VVE+T +GERSYD++SRLL ERIVF+  +I+D +A ++ AQLL LE+ NP++EIS+Y
Sbjct: 8   VPYVVERTAQGERSYDVFSRLLSERIVFLGTEIDDGVANVVIAQLLHLESANPEQEISIY 67

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           +NSPGG  T+ MAIYDTM F++ PISTFC+GQAAS  ++LL+ G+ G RF L +AR+LL 
Sbjct: 68  LNSPGGSFTSLMAIYDTMTFVRAPISTFCVGQAASTAAVLLAGGDPGRRFVLEHARVLLG 127

Query: 139 QP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP +GG  G  SD+   A+++V+I+ ++ E+  ++       +   +DRD + +A EA  
Sbjct: 128 QPAAGGAQGTVSDLALRAKEMVRIRAQVEEVLSRHTPHDVATLRADMDRDKVFTAEEAVA 187

Query: 198 WGVVDKVLMSRI 209
           +G+ D+VL  R+
Sbjct: 188 YGLADEVLSRRL 199


>gi|227538076|ref|ZP_03968125.1| endopeptidase Clp [Sphingobacterium spiritivorum ATCC 33300]
 gi|227242152|gb|EEI92167.1| endopeptidase Clp [Sphingobacterium spiritivorum ATCC 33300]
          Length = 232

 Score =  237 bits (606), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 92/205 (44%), Positives = 146/205 (71%)

Query: 8   KKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
            +  +++   L P +VE+        D++SRL+ +RI+F+   + D +A +I AQLLFL+
Sbjct: 28  SRVQQNMPTNLTPYIVEERQLNVAQMDVFSRLMMDRIIFLGDAVTDQVANIIQAQLLFLQ 87

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           + + Q++I +YINSPGG V AG+ IYDTMQ+I P ++T C G AASMG++LL AG KG R
Sbjct: 88  STDAQRDIQIYINSPGGSVYAGLGIYDTMQYISPDVATICTGMAASMGAVLLVAGAKGKR 147

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
            AL ++R+++HQPSGG  G A+D+E + ++++K+K  L  I  ++ G++YE VEK+ DRD
Sbjct: 148 TALKHSRVMIHQPSGGAQGVAADMEINLREMLKLKEELYTIIAEHSGQSYEWVEKSSDRD 207

Query: 188 HIMSASEACDWGVVDKVLMSRIDIE 212
           + M A+EA ++G+VD+VL S+ +I+
Sbjct: 208 YWMRAAEAKEFGMVDEVLSSKKEIK 232


>gi|260578314|ref|ZP_05846230.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Corynebacterium jeikeium ATCC 43734]
 gi|258603616|gb|EEW16877.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Corynebacterium jeikeium ATCC 43734]
          Length = 188

 Score =  237 bits (606), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 90/176 (51%), Positives = 124/176 (70%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL+ERI+F+  Q++D +A  +CAQ+L L AE+P ++ISLYINSPGG VTAGMAIYD
Sbjct: 12  VYERLLRERIIFLGSQVDDEIANELCAQILLLSAEDPTRDISLYINSPGGSVTAGMAIYD 71

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM++    I+T+ MG AASMG  LLSAG KG R+ALP+ARI++HQPS G  G A+DI   
Sbjct: 72  TMKYAPCDIATYGMGLAASMGQFLLSAGTKGKRYALPHARIMMHQPSAGVGGTAADIAIQ 131

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           A+     KR + E+  +  G+T E++ K  DRD   +A +A ++G VD V+ S  +
Sbjct: 132 AEQFAYTKREMAELIAEFTGQTVEQITKDSDRDRWFTAEQAKEYGFVDHVITSAKE 187


>gi|225551910|ref|ZP_03772850.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia sp.
           SV1]
 gi|225370908|gb|EEH00338.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia sp.
           SV1]
          Length = 194

 Score =  237 bits (606), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 96/191 (50%), Positives = 140/191 (73%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            L+P V+E T   ER +DIYSRLL+ERI+F++G+I D  A  + AQLLFLE+E+  K+I 
Sbjct: 3   NLIPTVIENTGNYERVFDIYSRLLRERIIFLSGEINDPKADTVIAQLLFLESEDSNKDIY 62

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LY+NSPGG +TAG+AIYDTMQ+IKP + T C+GQAASMG+ LL+ G KG R +L  +RI+
Sbjct: 63  LYLNSPGGSITAGLAIYDTMQYIKPDVRTICIGQAASMGAFLLAGGAKGKRESLTYSRIM 122

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG SGQASDI   A +I+++K+ + +I     G   E++   ++RD+ M++S+A 
Sbjct: 123 IHQPWGGISGQASDINIQANEILRLKKLIIDIMSNQIGVDKEKLALDMERDYFMTSSDAL 182

Query: 197 DWGVVDKVLMS 207
            +G++D +L+ 
Sbjct: 183 KYGLIDSILVR 193


>gi|300772705|ref|ZP_07082575.1| ATP-dependent Clp protease proteolytic subunit [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300761008|gb|EFK57834.1| ATP-dependent Clp protease proteolytic subunit [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 232

 Score =  237 bits (605), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 92/205 (44%), Positives = 146/205 (71%)

Query: 8   KKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
            +  +++   L P +VE+        D++SRL+ +RI+F+   + D +A +I AQLLFL+
Sbjct: 28  SRVQQNMPTNLTPYIVEERQLNVAQMDVFSRLMMDRIIFLGDAVTDQVANIIQAQLLFLQ 87

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           + + Q++I +YINSPGG V AG+ IYDTMQ+I P ++T C G AASMG++LL AG KG R
Sbjct: 88  STDAQRDIQIYINSPGGSVYAGLGIYDTMQYISPDVATICTGMAASMGAVLLVAGAKGKR 147

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
            AL ++R+++HQPSGG  G A+D+E + ++++K+K  L  I  ++ G++YE VEK+ DRD
Sbjct: 148 AALKHSRVMIHQPSGGAQGVAADMEINLREMLKLKEELYTIIAEHSGQSYEWVEKSSDRD 207

Query: 188 HIMSASEACDWGVVDKVLMSRIDIE 212
           + M A+EA ++G+VD+VL S+ +I+
Sbjct: 208 YWMRAAEAKEFGMVDEVLSSKKEIK 232


>gi|227542940|ref|ZP_03972989.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227181162|gb|EEI62134.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 187

 Score =  237 bits (605), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 89/173 (51%), Positives = 123/173 (71%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL+ERI+F+  ++ D +A  +CAQ+L L AE+P ++ISLYINSPGG VTAGMAIYD
Sbjct: 7   VYERLLRERIIFLGSEVNDEIANKLCAQILLLSAEDPTRDISLYINSPGGSVTAGMAIYD 66

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM++    ++T+ MG AASMG  LL+AG KG R+ALP+ARIL+HQPS G  G ASDI   
Sbjct: 67  TMKYAPCDVATYAMGLAASMGQFLLTAGTKGKRYALPHARILMHQPSAGVGGTASDIAIQ 126

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           AQ     K+ + E+  ++ G+T+E++ K  DRD   +A EA D+G+ D V+  
Sbjct: 127 AQQFALTKKEMAELIAEHSGQTFEQISKDSDRDRWFTAEEARDYGLCDHVISH 179


>gi|153809070|ref|ZP_01961738.1| hypothetical protein BACCAC_03378 [Bacteroides caccae ATCC 43185]
 gi|149128403|gb|EDM19622.1| hypothetical protein BACCAC_03378 [Bacteroides caccae ATCC 43185]
          Length = 220

 Score =  237 bits (605), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 86/189 (45%), Positives = 134/189 (70%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  Q++D+ A  + AQLL+L++ +P K+IS+YI
Sbjct: 32  PYILEERQLNVTQLDVFSRLMMDRIIFLGTQVDDYTANTLQAQLLYLDSVDPGKDISIYI 91

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V AG+ IYDTMQFI   ++T C G AASM ++LL AG++G R ALP++R+++HQ
Sbjct: 92  NSPGGSVYAGLGIYDTMQFISSDVATICTGMAASMAAVLLVAGKEGKRSALPHSRVMIHQ 151

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I K+K+ L  I   +    +++V    DRD+ M+A EA ++G
Sbjct: 152 PMGGAQGQASDIEITAREIQKLKKELYTIIADHSHTDFDKVWADSDRDYWMTAQEAKEYG 211

Query: 200 VVDKVLMSR 208
           ++D+VL+ +
Sbjct: 212 MIDEVLIKK 220


>gi|150026123|ref|YP_001296949.1| ATP-dependent Clp protease proteolytic subunit [Flavobacterium
           psychrophilum JIP02/86]
 gi|149772664|emb|CAL44147.1| S14 family, ATP-dependent Clp protease proteolytic subunit
           [Flavobacterium psychrophilum JIP02/86]
          Length = 233

 Score =  237 bits (605), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 85/207 (41%), Positives = 138/207 (66%), Gaps = 3/207 (1%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           M ++      S      + P ++E+        D++SRL+ +RI+F+   I+D +A ++ 
Sbjct: 30  MYYDKIVGAMSPT---NMTPYIIEERQLNISQLDVFSRLMMDRIIFLGTGIDDQIANIVQ 86

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE+ +  K+I +Y+NSPGG V AG+ IYDTMQ+IKP ++T C G AASMG++LL 
Sbjct: 87  AQLLFLESADASKDIQIYLNSPGGSVYAGLGIYDTMQYIKPDVATICTGMAASMGAVLLC 146

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG  G R ALP++R+++HQPSGG  G A+D+E + ++++K+K  L  I   + G+T+++V
Sbjct: 147 AGAAGKRSALPHSRVMIHQPSGGAQGVATDMEINLREMLKLKDELYNIISHHSGQTFDKV 206

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMS 207
               +RD+ M A +A ++G++D+VL  
Sbjct: 207 HADSERDYWMIADQAKEYGMIDEVLRR 233


>gi|221218018|ref|ZP_03589484.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi 72a]
 gi|221191966|gb|EEE18187.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi 72a]
          Length = 194

 Score =  237 bits (605), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 96/191 (50%), Positives = 140/191 (73%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            L+P V+E T   ER +DIYSRLL+ERI+F++G+I D  A  + AQLLFLE+E+  K+I 
Sbjct: 3   NLIPTVIENTGNYERVFDIYSRLLRERIIFLSGEINDSKADTVIAQLLFLESEDSSKDIY 62

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LY+NSPGG +TAG+AIYDTMQ+IKP + T C+GQAASMG+ LL+ G KG R +L  +RI+
Sbjct: 63  LYLNSPGGSITAGLAIYDTMQYIKPDVRTICIGQAASMGAFLLAGGAKGKRESLTYSRIM 122

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG SGQASDI   A +I+++K+ + +I     G   E++   ++RD+ M++S+A 
Sbjct: 123 IHQPWGGISGQASDINIQANEILRLKKLIIDIMSNQIGVDKEKLALDMERDYFMTSSDAL 182

Query: 197 DWGVVDKVLMS 207
            +G++D +L+ 
Sbjct: 183 KYGLIDSILVR 193


>gi|124007705|ref|ZP_01692408.1| Clp protease [Microscilla marina ATCC 23134]
 gi|123986827|gb|EAY26599.1| Clp protease [Microscilla marina ATCC 23134]
          Length = 232

 Score =  237 bits (605), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 87/187 (46%), Positives = 131/187 (70%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
            V+E+     R  D++SRL+ +RI+F+   I+D +A ++ AQLLFLE+ + +K+I +YIN
Sbjct: 43  TVIEERPTNFREIDVFSRLIMDRIIFLGMGIDDLVANVVTAQLLFLESVDSKKDILVYIN 102

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGG V AG+ IYDTMQ++ P + T C G AASMG++LL+ G +  R AL ++R+++HQP
Sbjct: 103 SPGGSVYAGLGIYDTMQYVNPDVVTICTGLAASMGAVLLAGGAENKRSALEHSRVMIHQP 162

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            GG  GQASDIE  A+ I+ +K  L EI  K+ GK  E++EK  DRD+ M +  A ++G+
Sbjct: 163 LGGAQGQASDIEITAKQILILKHELYEILAKHSGKAIEDIEKHADRDYWMKSDAAKEYGL 222

Query: 201 VDKVLMS 207
           +D+VL+ 
Sbjct: 223 IDEVLVK 229


>gi|294809722|ref|ZP_06768409.1| Clp protease [Bacteroides xylanisolvens SD CC 1b]
 gi|294443056|gb|EFG11836.1| Clp protease [Bacteroides xylanisolvens SD CC 1b]
          Length = 207

 Score =  237 bits (605), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 86/189 (45%), Positives = 133/189 (70%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  Q++D+ A  + AQLL+L++ +P K+IS+YI
Sbjct: 19  PYILEERQLNVTQLDVFSRLMMDRIIFLGTQVDDYTANTLQAQLLYLDSVDPGKDISIYI 78

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V AG+ IYDTMQFI   ++T C G AASM ++LL AG +G R ALP++R+++HQ
Sbjct: 79  NSPGGSVYAGLGIYDTMQFISSDVATICTGMAASMAAVLLVAGAEGKRSALPHSRVMIHQ 138

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I K+K+ L  I   +    +++V    DRD+ M+A EA ++G
Sbjct: 139 PMGGAQGQASDIEITAREIQKLKKELYTIIADHSHTDFDKVWADSDRDYWMTAQEAKEYG 198

Query: 200 VVDKVLMSR 208
           ++D+VL+ +
Sbjct: 199 MIDEVLIKK 207


>gi|126348113|emb|CAJ89834.1| putative ATP-dependent Clp protease proteolytic subunit 2
           [Streptomyces ambofaciens ATCC 23877]
          Length = 200

 Score =  237 bits (604), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 93/192 (48%), Positives = 137/192 (71%), Gaps = 1/192 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVE+T +GERSYD++SRLL ERI+F+  +I+D +A ++ AQLL LE+  P+ EI++Y
Sbjct: 6   IPSVVERTPQGERSYDVFSRLLSERIIFLGTEIDDGVANVVIAQLLHLESSAPESEIAVY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  T+ MAIYDTM F++ PISTFC+GQAAS  ++LL+ G+ G RF L +AR+LL 
Sbjct: 66  INSPGGSFTSLMAIYDTMTFVQAPISTFCVGQAASTAAVLLAGGDPGRRFVLEHARVLLG 125

Query: 139 QP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP SGG  G  SD+   A+++V+I+ ++ E+  ++       +   +DRD + SA EA  
Sbjct: 126 QPASGGRQGTVSDLALQAKEMVRIRAQVEEVLARHTHHDVTTLRADMDRDKVFSAEEAVA 185

Query: 198 WGVVDKVLMSRI 209
           +G+ D+VL  R+
Sbjct: 186 YGLADEVLGRRL 197


>gi|224533546|ref|ZP_03674135.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi CA-11.2a]
 gi|224513219|gb|EEF83581.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi CA-11.2a]
          Length = 194

 Score =  237 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 96/191 (50%), Positives = 140/191 (73%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            L+P V+E T   ER +DIYSRLL+ERI+F++G+I D  A  + AQLLFLE+E+  K+I 
Sbjct: 3   NLIPTVIENTGNYERVFDIYSRLLRERIIFLSGEINDPKADTVIAQLLFLESEDSSKDIY 62

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LY+NSPGG +TAG+AIYDTMQ+IKP + T C+GQAASMG+ LL+ G KG R +L  +RI+
Sbjct: 63  LYLNSPGGSITAGLAIYDTMQYIKPDVRTICIGQAASMGAFLLAGGTKGKRESLTYSRIM 122

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG SGQASDI   A +I+++K+ + +I     G   E++   ++RD+ M++S+A 
Sbjct: 123 IHQPWGGISGQASDINIQANEILRLKKLIIDIMSNQIGVDKEKLALDMERDYFMTSSDAL 182

Query: 197 DWGVVDKVLMS 207
            +G++D +L+ 
Sbjct: 183 KYGLIDSILVR 193


>gi|29349250|ref|NP_812753.1| ATP-dependent Clp protease proteolytic subunit [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|160882386|ref|ZP_02063389.1| hypothetical protein BACOVA_00335 [Bacteroides ovatus ATCC 8483]
 gi|237712737|ref|ZP_04543218.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacteroides sp.
           D1]
 gi|237719059|ref|ZP_04549540.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacteroides sp.
           2_2_4]
 gi|253573097|ref|ZP_04850488.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|255690574|ref|ZP_05414249.1| Clp protease [Bacteroides finegoldii DSM 17565]
 gi|260172007|ref|ZP_05758419.1| ATP-dependent Clp protease proteolytic subunit [Bacteroides sp. D2]
 gi|262408126|ref|ZP_06084673.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacteroides
           sp. 2_1_22]
 gi|293369498|ref|ZP_06616077.1| Clp protease [Bacteroides ovatus SD CMC 3f]
 gi|294645126|ref|ZP_06722851.1| Clp protease [Bacteroides ovatus SD CC 2a]
 gi|298384791|ref|ZP_06994350.1| Clp protease [Bacteroides sp. 1_1_14]
 gi|298480169|ref|ZP_06998367.1| Clp protease [Bacteroides sp. D22]
 gi|299148142|ref|ZP_07041204.1| Clp protease [Bacteroides sp. 3_1_23]
 gi|315920320|ref|ZP_07916560.1| ATP-dependent Clp protease proteolytic subunit [Bacteroides sp. D2]
 gi|67460394|sp|Q8A129|CLPP_BACTN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|29341158|gb|AAO78947.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|156112199|gb|EDO13944.1| hypothetical protein BACOVA_00335 [Bacteroides ovatus ATCC 8483]
 gi|229447214|gb|EEO53005.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacteroides sp.
           D1]
 gi|229451438|gb|EEO57229.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacteroides sp.
           2_2_4]
 gi|251837320|gb|EES65420.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|260624036|gb|EEX46907.1| Clp protease [Bacteroides finegoldii DSM 17565]
 gi|262353678|gb|EEZ02771.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacteroides
           sp. 2_1_22]
 gi|292635383|gb|EFF53896.1| Clp protease [Bacteroides ovatus SD CMC 3f]
 gi|292639550|gb|EFF57843.1| Clp protease [Bacteroides ovatus SD CC 2a]
 gi|295088060|emb|CBK69583.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bacteroides
           xylanisolvens XB1A]
 gi|298261935|gb|EFI04800.1| Clp protease [Bacteroides sp. 1_1_14]
 gi|298273450|gb|EFI15013.1| Clp protease [Bacteroides sp. D22]
 gi|298512903|gb|EFI36790.1| Clp protease [Bacteroides sp. 3_1_23]
 gi|313694195|gb|EFS31030.1| ATP-dependent Clp protease proteolytic subunit [Bacteroides sp. D2]
          Length = 220

 Score =  237 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 86/189 (45%), Positives = 133/189 (70%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  Q++D+ A  + AQLL+L++ +P K+IS+YI
Sbjct: 32  PYILEERQLNVTQLDVFSRLMMDRIIFLGTQVDDYTANTLQAQLLYLDSVDPGKDISIYI 91

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V AG+ IYDTMQFI   ++T C G AASM ++LL AG +G R ALP++R+++HQ
Sbjct: 92  NSPGGSVYAGLGIYDTMQFISSDVATICTGMAASMAAVLLVAGAEGKRSALPHSRVMIHQ 151

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I K+K+ L  I   +    +++V    DRD+ M+A EA ++G
Sbjct: 152 PMGGAQGQASDIEITAREIQKLKKELYTIIADHSHTDFDKVWADSDRDYWMTAQEAKEYG 211

Query: 200 VVDKVLMSR 208
           ++D+VL+ +
Sbjct: 212 MIDEVLIKK 220


>gi|262341363|ref|YP_003284218.1| ATP-dependent Clp protease, proteolytic subunit 2 [Blattabacterium
           sp. (Blattella germanica) str. Bge]
 gi|262272700|gb|ACY40608.1| ATP-dependent Clp protease, proteolytic subunit 2 [Blattabacterium
           sp. (Blattella germanica) str. Bge]
          Length = 237

 Score =  237 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 88/197 (44%), Positives = 134/197 (68%)

Query: 14  VFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQK 73
           +   + P +VE+        D++SRL+ +R++F+   IED +A ++ AQLLFL++ +  K
Sbjct: 40  IIQSMTPYIVEERKLNVAQMDVFSRLMMDRVIFLGTPIEDQVANIVQAQLLFLQSVDSVK 99

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I +YINSPGG V AG+ IYDTMQ ++P +ST C G AASM ++LL AG K  R AL ++
Sbjct: 100 DIQIYINSPGGDVYAGLGIYDTMQIVEPDVSTICTGMAASMAAVLLCAGVKNKRSALKHS 159

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           RI++HQP GG  GQASDIE   ++I+K+K+ L EI  K+ G   E++E   DRD+ M++ 
Sbjct: 160 RIMIHQPIGGTQGQASDIEITVREILKLKKELYEIISKHSGVPIEKIEIDSDRDYWMTSQ 219

Query: 194 EACDWGVVDKVLMSRID 210
           EA ++G++D+VL  +  
Sbjct: 220 EAKEYGMIDEVLEGKRK 236


>gi|160890572|ref|ZP_02071575.1| hypothetical protein BACUNI_03015 [Bacteroides uniformis ATCC 8492]
 gi|270295709|ref|ZP_06201909.1| Clp protease [Bacteroides sp. D20]
 gi|317479886|ref|ZP_07939003.1| Clp protease [Bacteroides sp. 4_1_36]
 gi|156859571|gb|EDO53002.1| hypothetical protein BACUNI_03015 [Bacteroides uniformis ATCC 8492]
 gi|270273113|gb|EFA18975.1| Clp protease [Bacteroides sp. D20]
 gi|316903960|gb|EFV25797.1| Clp protease [Bacteroides sp. 4_1_36]
          Length = 220

 Score =  237 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 86/189 (45%), Positives = 132/189 (69%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  Q++D+ A  + AQLL+L++ +P K+IS+YI
Sbjct: 32  PYILEERQLNVTQLDVFSRLMMDRIIFLGTQVDDYTANTLQAQLLYLDSVDPGKDISIYI 91

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V AG+ IYDTMQFI   ++T C G AASM ++LL AG +G R AL ++R+++HQ
Sbjct: 92  NSPGGSVYAGLGIYDTMQFISSDVATICTGMAASMAAVLLVAGAEGKRSALTHSRVMIHQ 151

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I K+K+ L  I   +    +++V    DRD+ M+A EA ++G
Sbjct: 152 PMGGAQGQASDIEITAREIQKLKKELYTIIADHSHTPFDKVWADSDRDYWMTAQEAKEYG 211

Query: 200 VVDKVLMSR 208
           +VD+VL+ +
Sbjct: 212 MVDEVLIKK 220


>gi|330996067|ref|ZP_08319961.1| endopeptidase Clp [Paraprevotella xylaniphila YIT 11841]
 gi|329574064|gb|EGG55642.1| endopeptidase Clp [Paraprevotella xylaniphila YIT 11841]
          Length = 231

 Score =  237 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 87/190 (45%), Positives = 133/190 (70%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  QI+D+ A  + AQLL+L++ +P K+IS+YI
Sbjct: 32  PYILEERQLNVTQMDVFSRLMMDRIIFLGTQIDDYTANTLQAQLLYLDSVDPGKDISIYI 91

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V AG+ IYDTMQFI  P++T C G AASM ++LL AG +G R AL ++R+++HQ
Sbjct: 92  NSPGGSVYAGLGIYDTMQFISSPVATICTGMAASMAAVLLVAGAEGKRSALTHSRVMIHQ 151

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I K+K+ L  I  ++    +++V    DRD+ M+A EA ++G
Sbjct: 152 PMGGAQGQASDIEITAREIQKLKKELYTIIAEHSHTDFDKVWADSDRDYWMTAQEAKEYG 211

Query: 200 VVDKVLMSRI 209
           ++D VL+ + 
Sbjct: 212 MIDSVLIRKK 221


>gi|239932975|ref|ZP_04689928.1| ATP-dependent Clp protease proteolytic subunit 2 [Streptomyces
           ghanaensis ATCC 14672]
 gi|291441328|ref|ZP_06580718.1| ATP-dependent Clp protease proteolytic subunit 2 [Streptomyces
           ghanaensis ATCC 14672]
 gi|291344223|gb|EFE71179.1| ATP-dependent Clp protease proteolytic subunit 2 [Streptomyces
           ghanaensis ATCC 14672]
          Length = 201

 Score =  237 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 92/192 (47%), Positives = 138/192 (71%), Gaps = 1/192 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVE+T +GERSYD++SRLL ERIVF+  +I+D +A ++ AQLL LE+  P+ EI++Y
Sbjct: 7   IPNVVERTAQGERSYDVFSRLLSERIVFLGTEIDDGVANVVIAQLLHLESAAPESEIAIY 66

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           +NSPGG VT+ MAIYDTM F++ P+STFC+GQAAS  ++LL+ G+ G RF L +AR+LL 
Sbjct: 67  LNSPGGSVTSLMAIYDTMTFVQAPVSTFCIGQAASTAAVLLAGGDPGRRFVLEHARVLLG 126

Query: 139 QPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP+ GG  G  SD+   AQ++V+I+ ++ E+  ++       +   +DRD + +A EA  
Sbjct: 127 QPATGGARGTVSDLSLRAQEMVRIRSQVEEVLSRHTHHDVATLRADMDRDKVFTAQEAVA 186

Query: 198 WGVVDKVLMSRI 209
           +G+ D+VL  R+
Sbjct: 187 YGLADEVLTRRL 198


>gi|300934280|ref|ZP_07149536.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           resistens DSM 45100]
          Length = 198

 Score =  237 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 90/176 (51%), Positives = 124/176 (70%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           ++ RLL+ERI+F+  Q++D +A  +CAQ+L L AE+P K+ISLYINSPGG VTAGMAIYD
Sbjct: 22  VFERLLRERIIFLGSQVDDEIANKLCAQILLLAAEDPNKDISLYINSPGGSVTAGMAIYD 81

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM++    I+T+ MG AASMG  LLSAG KG R+ALP+ARI++HQPS G  G A+DI   
Sbjct: 82  TMRYAPCDIATYGMGLAASMGQFLLSAGTKGKRYALPHARIMMHQPSAGVGGTAADIAIQ 141

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           A+     KR + E+  +  G+T E++ K  DRD   +A +A ++G VD V+ S  +
Sbjct: 142 AEQFAYTKREMAELIAEFTGQTVEQITKDSDRDRWFTAEQAKEYGFVDHVITSAKE 197


>gi|152967460|ref|YP_001363244.1| endopeptidase Clp [Kineococcus radiotolerans SRS30216]
 gi|151361977|gb|ABS04980.1| Endopeptidase Clp [Kineococcus radiotolerans SRS30216]
          Length = 213

 Score =  237 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 87/187 (46%), Positives = 128/187 (68%)

Query: 26  TNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV 85
           T       ++Y RLL++RI+++  ++ D MA  ICAQLL L AE+P  +I +YINSPGG 
Sbjct: 20  TPGMGLDDNVYQRLLQQRIIWLGTEVRDDMANAICAQLLLLAAEDPDADIFMYINSPGGS 79

Query: 86  VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS 145
           V+AGM+IYDTMQ+IKP ++T   G AASMG  LL AG  G R ALP+A+I++HQP GG  
Sbjct: 80  VSAGMSIYDTMQYIKPDVATIATGMAASMGQFLLCAGAAGKRSALPHAKIMMHQPLGGLG 139

Query: 146 GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           G ASDI+  A+ I+  K+++ E+  ++ G+T+E + +  DRD   SA EA ++G++D V+
Sbjct: 140 GSASDIKILAEQIIATKKQMAELIAQHSGQTFETITRDSDRDRWFSAQEAKEYGLIDHVV 199

Query: 206 MSRIDIE 212
               ++E
Sbjct: 200 GHTSEVE 206


>gi|325187857|emb|CCA22400.1| ATPdependent Clp protease proteolytic subunit putati [Albugo
           laibachii Nc14]
          Length = 250

 Score =  237 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 105/197 (53%), Positives = 152/197 (77%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
             F   +P+V+E+++ GER+YDIYSRLLKERI+FV G I+D +++L+ AQLL+LE+E P 
Sbjct: 47  SRFSSYIPIVLEKSHSGERAYDIYSRLLKERIIFVQGPIDDTLSSLVTAQLLYLESEQPD 106

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K+I +YINSPGG+VT+G+AI+DTMQ+I P + T C+GQAASM +LLL+ G  G R+ALPN
Sbjct: 107 KDIYMYINSPGGIVTSGLAIFDTMQYIHPNVRTLCLGQAASMAALLLAGGAPGHRYALPN 166

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           +RI++HQPSGG  G ASDI  HA++I+K++ RLN++Y  + GK+   +EK +DRD  M  
Sbjct: 167 SRIMIHQPSGGTRGMASDIAIHAEEIIKLRHRLNKLYSSHTGKSISTIEKAMDRDLFMDP 226

Query: 193 SEACDWGVVDKVLMSRI 209
            EA ++G++D ++  R 
Sbjct: 227 EEAVNFGIIDSIMRERK 243


>gi|195941431|ref|ZP_03086813.1| ATP-dependent Clp protease proteolytic component (clpP-1) [Borrelia
           burgdorferi 80a]
 gi|218249848|ref|YP_002375116.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi ZS7]
 gi|223889055|ref|ZP_03623645.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi 64b]
 gi|224532428|ref|ZP_03673055.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi WI91-23]
 gi|225549547|ref|ZP_03770513.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi 118a]
 gi|226321916|ref|ZP_03797442.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi Bol26]
 gi|218165036|gb|ACK75097.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi ZS7]
 gi|223885481|gb|EEF56581.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi 64b]
 gi|224512638|gb|EEF83012.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi WI91-23]
 gi|225369824|gb|EEG99271.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi 118a]
 gi|226233105|gb|EEH31858.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi Bol26]
 gi|312147788|gb|ADQ30447.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi JD1]
 gi|312149314|gb|ADQ29385.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi N40]
          Length = 194

 Score =  237 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 96/191 (50%), Positives = 140/191 (73%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            L+P V+E T   ER +DIYSRLL+ERI+F++G+I D  A  + AQLLFLE+E+  K+I 
Sbjct: 3   NLIPTVIENTGNYERVFDIYSRLLRERIIFLSGEINDPKADTVIAQLLFLESEDSSKDIY 62

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LY+NSPGG +TAG+AIYDTMQ+IKP + T C+GQAASMG+ LL+ G KG R +L  +RI+
Sbjct: 63  LYLNSPGGSITAGLAIYDTMQYIKPDVRTICIGQAASMGAFLLAGGAKGKRESLTYSRIM 122

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG SGQASDI   A +I+++K+ + +I     G   E++   ++RD+ M++S+A 
Sbjct: 123 IHQPWGGISGQASDINIQANEILRLKKLIIDIMSNQIGVDKEKLALDMERDYFMTSSDAL 182

Query: 197 DWGVVDKVLMS 207
            +G++D +L+ 
Sbjct: 183 KYGLIDSILVR 193


>gi|223982668|ref|ZP_03632900.1| hypothetical protein HOLDEFILI_00174 [Holdemania filiformis DSM
           12042]
 gi|223965367|gb|EEF69647.1| hypothetical protein HOLDEFILI_00174 [Holdemania filiformis DSM
           12042]
          Length = 193

 Score =  237 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 90/194 (46%), Positives = 141/194 (72%), Gaps = 1/194 (0%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P ++EQ+ R +R+YD+ S LLKERI+ +T QI+D ++  +CAQLL+L +    ++I
Sbjct: 1   MTLIPTIIEQSARSDRAYDLISCLLKERIILLTSQIDDTVSGNLCAQLLYLAS-RSSQDI 59

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG V+AG+AIYDTMQ I+  +ST CMG AASM ++LL+ G +G R+ALPN+ I
Sbjct: 60  QLYINSPGGSVSAGLAIYDTMQLIRCDVSTICMGMAASMAAVLLAGGTRGKRYALPNSEI 119

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA+D++  A+ I++I++RLN +   + G++  E+ +  DRD   SA EA
Sbjct: 120 MIHQPLGGVQGQAADVKIAAEHILQIRQRLNTLLANDTGRSLREISEDSDRDRYFSAEEA 179

Query: 196 CDWGVVDKVLMSRI 209
            ++G++D ++  + 
Sbjct: 180 KNYGLIDDLVHKQK 193


>gi|332044507|gb|EGI80701.1| Endopeptidase Clp [Lacinutrix algicola 5H-3-7-4]
          Length = 224

 Score =  236 bits (603), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 90/191 (47%), Positives = 131/191 (68%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            + P V+E+        D++SRL+ +RI+F+   I D++A +I AQLLFL + +  K+I 
Sbjct: 33  SMTPYVIEERQLNISQLDVFSRLMMDRILFLGTGINDNIANIIQAQLLFLASTDNTKDIQ 92

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG V AG+ IYDTMQFI P ++T C G AASMG++LL AGEKG R  L ++R++
Sbjct: 93  MYINSPGGSVYAGLGIYDTMQFIGPDVATICTGMAASMGAVLLCAGEKGKRSGLEHSRVM 152

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQASDIE  A++I+ +K+ L EI  K+ G+ Y+ +    DRD+ M A  A 
Sbjct: 153 IHQPLGGAQGQASDIEITAREILTLKKELYEIISKHSGQDYDTIYNDSDRDYWMKADRAK 212

Query: 197 DWGVVDKVLMS 207
           ++G++D+VL  
Sbjct: 213 EYGMIDEVLKR 223


>gi|224535961|ref|ZP_03676500.1| hypothetical protein BACCELL_00825 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522416|gb|EEF91521.1| hypothetical protein BACCELL_00825 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 220

 Score =  236 bits (603), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 86/189 (45%), Positives = 131/189 (69%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  Q++D+ A  + AQLL+L++  P K+IS+YI
Sbjct: 32  PYILEERQLNVTQLDVFSRLMMDRIIFLGTQVDDYTANTLQAQLLYLDSVEPGKDISIYI 91

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V AG+ IYDTMQFI   ++T C G AASM ++LL AG +G R AL ++R+++HQ
Sbjct: 92  NSPGGSVYAGLGIYDTMQFITSDVATICTGMAASMAAVLLVAGAEGKRSALTHSRVMIHQ 151

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I K+K+ L  I   +    +++V    DRD+ M+A EA ++G
Sbjct: 152 PMGGAQGQASDIEITAREIQKLKKELYTIIADHSHTPFDKVWADSDRDYWMTAQEAKEYG 211

Query: 200 VVDKVLMSR 208
           +VD+VL+ +
Sbjct: 212 MVDEVLIKK 220


>gi|51598863|ref|YP_073051.1| ATP-dependent Clp protease proteolytic subunit [Borrelia garinii
           PBi]
 gi|67460252|sp|Q660R2|CLPP_BORGA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|51573434|gb|AAU07459.1| ATP-dependent Clp protease proteolytic component [Borrelia garinii
           PBi]
          Length = 194

 Score =  236 bits (603), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 95/191 (49%), Positives = 140/191 (73%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            L+P V+E T   ER +DIYSRLL+ERI+F++G+I D  A  + AQLLFLE+E+  K+I 
Sbjct: 3   NLIPTVIEHTGNYERVFDIYSRLLRERIIFLSGEINDLKADTVIAQLLFLESEDSNKDIY 62

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LY+NSPGG +TAG+AIYDTMQ+IKP + T C+GQAASMG+ LL+ G KG R +L  +RI+
Sbjct: 63  LYLNSPGGSITAGLAIYDTMQYIKPDVRTICIGQAASMGAFLLAGGAKGKRESLAYSRIM 122

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG SGQASDI   A +I+++K+ + +I     G   E++   ++RD+ M++++A 
Sbjct: 123 IHQPWGGISGQASDINIQANEILRLKKLIIDIMSNQIGIDKEKLALDMERDYFMTSNDAL 182

Query: 197 DWGVVDKVLMS 207
            +G++D +L+ 
Sbjct: 183 KYGLIDSILVR 193


>gi|227874919|ref|ZP_03993071.1| endopeptidase Clp [Mobiluncus mulieris ATCC 35243]
 gi|227844496|gb|EEJ54653.1| endopeptidase Clp [Mobiluncus mulieris ATCC 35243]
          Length = 206

 Score =  236 bits (603), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 96/197 (48%), Positives = 129/197 (65%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G VP   +       +  IY RLLKERI+++  Q+ +  A  ICAQ+L L AE+P  +I 
Sbjct: 8   GTVPHNAKDDTAAPMNDFIYKRLLKERIIWLGTQVAEENANAICAQMLLLAAEDPDSDIY 67

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGMAIYDTMQ+IKP + T  MG AASMG  LL+AG KG RFA P+ARIL
Sbjct: 68  LYINSPGGSVTAGMAIYDTMQYIKPDVVTVTMGMAASMGQFLLTAGAKGKRFATPHARIL 127

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  G AS++  +A  I+ +K  L +I  +  G T EE+ +  DRDH  +A EA 
Sbjct: 128 MHQPLGGVQGTASEVRINADLILAMKNELAQITAERTGHTLEEITRDADRDHWYTAQEAL 187

Query: 197 DWGVVDKVLMSRIDIEE 213
           ++G +D V+ +   +++
Sbjct: 188 EYGFIDAVVENAEAVKK 204


>gi|189463685|ref|ZP_03012470.1| hypothetical protein BACINT_00016 [Bacteroides intestinalis DSM
           17393]
 gi|189438635|gb|EDV07620.1| hypothetical protein BACINT_00016 [Bacteroides intestinalis DSM
           17393]
          Length = 220

 Score =  236 bits (603), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 86/189 (45%), Positives = 132/189 (69%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  Q++D+ A  + AQLL+L++ +P K+IS+YI
Sbjct: 32  PYILEERQLNVTQLDVFSRLMMDRIIFLGTQVDDYTANTLQAQLLYLDSVDPGKDISIYI 91

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V AG+ IYDTMQFI   ++T C G AASM ++LL AG +G R AL ++R+++HQ
Sbjct: 92  NSPGGSVYAGLGIYDTMQFITSDVATICTGMAASMAAVLLVAGAEGKRSALTHSRVMIHQ 151

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I K+K+ L  I   +    +++V    DRD+ M+A EA ++G
Sbjct: 152 PMGGAQGQASDIEITAREIQKLKKELYTIIADHSHTPFDKVWADSDRDYWMTAQEAKEYG 211

Query: 200 VVDKVLMSR 208
           +VD+VL+ +
Sbjct: 212 MVDEVLIKK 220


>gi|306818243|ref|ZP_07451973.1| ATP-dependent Clp protease proteolytic subunit [Mobiluncus mulieris
           ATCC 35239]
 gi|304648982|gb|EFM46277.1| ATP-dependent Clp protease proteolytic subunit [Mobiluncus mulieris
           ATCC 35239]
          Length = 206

 Score =  236 bits (603), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 96/197 (48%), Positives = 129/197 (65%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G VP   +       +  IY RLLKERI+++  Q+ +  A  ICAQ+L L AE+P  +I 
Sbjct: 8   GTVPHNAKDDAAAPMNDFIYKRLLKERIIWLGTQVAEENANAICAQMLLLAAEDPDSDIY 67

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGMAIYDTMQ+IKP + T  MG AASMG  LL+AG KG RFA P+ARIL
Sbjct: 68  LYINSPGGSVTAGMAIYDTMQYIKPDVVTVTMGMAASMGQFLLTAGAKGKRFATPHARIL 127

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  G AS++  +A  I+ +K  L +I  +  G T EE+ +  DRDH  +A EA 
Sbjct: 128 MHQPLGGVQGTASEVRINADLILAMKNELAQITAERTGHTLEEITRDADRDHWYTAQEAL 187

Query: 197 DWGVVDKVLMSRIDIEE 213
           ++G +D V+ +   +++
Sbjct: 188 EYGFIDAVVENAEAVKK 204


>gi|216264918|ref|ZP_03436910.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi 156a]
 gi|225548921|ref|ZP_03769898.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi 94a]
 gi|226321180|ref|ZP_03796719.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi 29805]
 gi|215981391|gb|EEC22198.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi 156a]
 gi|225370524|gb|EEG99960.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi 94a]
 gi|226233413|gb|EEH32155.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           burgdorferi 29805]
          Length = 194

 Score =  236 bits (603), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 96/191 (50%), Positives = 140/191 (73%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            L+P V+E T   ER +DIYSRLL+ERI+F++G+I D  A  + AQLLFLE+E+  K+I 
Sbjct: 3   NLIPTVIENTGNYERVFDIYSRLLRERIIFLSGEINDPKADTVIAQLLFLESEDSSKDIY 62

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LY+NSPGG +TAG+AIYDTMQ+IKP + T C+GQAASMG+ LL+ G KG R +L  +RI+
Sbjct: 63  LYLNSPGGSITAGLAIYDTMQYIKPDVRTICIGQAASMGAFLLAGGAKGKRESLTYSRIM 122

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG SGQASDI   A +I+++K+ + +I     G   E++   ++RD+ M++S+A 
Sbjct: 123 IHQPWGGISGQASDINIQANEILRLKKLIIDIMSNQIGVDKEKLALDMERDYFMTSSDAL 182

Query: 197 DWGVVDKVLMS 207
            +G++D +L+ 
Sbjct: 183 KYGLIDSILVR 193


>gi|227488326|ref|ZP_03918642.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091736|gb|EEI27048.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 187

 Score =  236 bits (603), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 89/173 (51%), Positives = 124/173 (71%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL+ERI+F+  ++ D +A  +CAQ+L L AE+P ++ISLYINSPGG VTAGMAIYD
Sbjct: 7   VYERLLRERIIFLGSEVNDEIANKLCAQILLLSAEDPTRDISLYINSPGGSVTAGMAIYD 66

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM++    ++T+ MG AASMG  LL+AG KG R+ALP+ARIL+HQPS G  G ASDI   
Sbjct: 67  TMKYAPCDVATYAMGLAASMGQFLLTAGTKGKRYALPHARILMHQPSAGVGGTASDIAIQ 126

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           AQ     K+ ++E+  ++ G+T+E++ K  DRD   +A EA D+G+ D V+  
Sbjct: 127 AQQFALTKKEMDELIAEHSGQTFEQISKDSDRDRWFTAEEARDYGLCDHVISH 179


>gi|305681092|ref|ZP_07403899.1| endopeptidase Clp [Corynebacterium matruchotii ATCC 14266]
 gi|305659297|gb|EFM48797.1| endopeptidase Clp [Corynebacterium matruchotii ATCC 14266]
          Length = 191

 Score =  236 bits (603), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 87/175 (49%), Positives = 125/175 (71%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           S  +Y RLL++RI+F+  Q++D +A  +CAQ+L L AE+P ++ISLYINSPGG VTAGMA
Sbjct: 9   SDSVYERLLRDRIIFLGTQVDDEIANKLCAQILLLSAEDPTRDISLYINSPGGSVTAGMA 68

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYDTM +    I+T+ MG AASMG  LL+ G KG R+ALP+ARI++HQPS G  G A+DI
Sbjct: 69  IYDTMTYSPCDIATYAMGLAASMGQFLLTGGTKGKRYALPHARIMMHQPSAGVGGTAADI 128

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
              A+   + KR + E+  ++ G+T+E++ K  DRD   +A +A ++G+VD V+ 
Sbjct: 129 AIQAEQFAQTKREMAELIAEHSGQTFEQITKDSDRDRWFTAQQALEYGLVDHVIT 183


>gi|313239506|emb|CBY14435.1| unnamed protein product [Oikopleura dioica]
          Length = 249

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 106/210 (50%), Positives = 145/210 (69%), Gaps = 8/210 (3%)

Query: 3   FEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTG------QIEDHMA 56
           F G   + +       VP+V+EQ   GER+YDIYSRLLK+RI+ V G      ++ D +A
Sbjct: 24  FSGPRSRTATQERAFGVPLVIEQEMGGERTYDIYSRLLKDRIICVFGIFHPRKKVHDQLA 83

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             + AQLLFL ++ P + I +YINSPGGVVT+GMAIYD MQ I  P+ T+C+G AASMGS
Sbjct: 84  AAVVAQLLFLASDKPDQPIKMYINSPGGVVTSGMAIYDCMQLISCPVETWCLGNAASMGS 143

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC--G 174
           LLL+AG  G R+ALPNA+I++HQP GG  GQA+DI   A++I + K+ L + YV +    
Sbjct: 144 LLLTAGSPGCRYALPNAQIMIHQPLGGAQGQATDILIAAKNIDRTKKTLTQTYVTHNAKN 203

Query: 175 KTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           KTYEE    ++RD+ M+A EA D+G++DK+
Sbjct: 204 KTYEEFFNAMERDNYMTAQEALDFGIIDKI 233


>gi|111018382|ref|YP_701354.1| ATP-dependent Clp protease proteolytic subunit [Rhodococcus jostii
           RHA1]
 gi|116243119|sp|Q0SGZ0|CLPP2_RHOSR RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|110817912|gb|ABG93196.1| ATP-dependent protease proteolytic subunit [Rhodococcus jostii
           RHA1]
          Length = 195

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 90/176 (51%), Positives = 124/176 (70%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           S  +Y RLL+ERI+F+  Q++D +A  +CAQ+L L AE+P ++ISLYINSPGG V+AGMA
Sbjct: 11  SDSVYERLLRERIIFLGTQVDDDIANKLCAQILLLSAEDPSRDISLYINSPGGSVSAGMA 70

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           I+DTMQF +  ++TF MG AASMG  LLSAG KG R+ALP+ARI++HQPS G  G ASDI
Sbjct: 71  IFDTMQFAECDVATFGMGLAASMGQFLLSAGAKGKRYALPHARIMMHQPSAGIGGTASDI 130

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
              A+     KR + E+  ++ G+T E++    DRD   +A +A ++G VD V+  
Sbjct: 131 AIMAEQFAHTKREMAELIAEHTGQTVEQITADSDRDRWFTAQQALEYGFVDHVVSR 186


>gi|89889548|ref|ZP_01201059.1| ATP-dependent Clp protease proteolytic subunit 2 [Flavobacteria
           bacterium BBFL7]
 gi|89517821|gb|EAS20477.1| ATP-dependent Clp protease proteolytic subunit 2 [Flavobacteria
           bacterium BBFL7]
          Length = 224

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 93/207 (44%), Positives = 137/207 (66%), Gaps = 3/207 (1%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           M ++             L P ++E+       +D++SRL+ +RI+F+   + D +A +I 
Sbjct: 20  MYYDKIMGSM---YPTNLTPNIIEERQMNIAIFDVFSRLMMDRIIFMGTGVNDQVANIIQ 76

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE+ +  K+I +YINSPGG V AG+ IYDTMQFIKP ++T C G AASMG++LL 
Sbjct: 77  AQLLFLESTDANKDIQIYINSPGGSVYAGLGIYDTMQFIKPDVATICTGMAASMGAVLLC 136

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG  G R ALP++R+++HQ S G  GQASDIE  A+++VK++  L  I  K+  +TYE+V
Sbjct: 137 AGADGKRSALPHSRVMIHQVSSGAQGQASDIEITAREVVKLREELYTIIAKHSKQTYEKV 196

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMS 207
               DRD+ M A+EA ++G++D+VL  
Sbjct: 197 YADSDRDYWMKAAEAKEYGMIDEVLTR 223


>gi|162606094|ref|XP_001713562.1| ATP-dependent Clp protease proteolytic subunit [Guillardia theta]
 gi|13794482|gb|AAK39857.1|AF165818_65 ATP-dependent Clp protease proteolytic subunit [Guillardia theta]
          Length = 233

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 94/196 (47%), Positives = 138/196 (70%), Gaps = 2/196 (1%)

Query: 19  VPMVVEQTNRGE--RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +          DIY+RL +ERI+F+  +I+D +A  I A +L+L++E+  K I 
Sbjct: 37  VPKVAYRVPGSPSADWVDIYNRLYRERIIFLGQEIDDEIANQIIAVMLYLDSEDNSKPIY 96

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG V +G+A+YDTM+ IK  + T  +G AASM S +L+AGEKG R ALP++RI+
Sbjct: 97  MYINSPGGSVISGLAMYDTMRHIKSEVITINVGLAASMSSFILAAGEKGKRLALPHSRIM 156

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQASDIE  AQ I+KI++ L E Y +  G++YE+V + +DRD+ MS+ EA 
Sbjct: 157 IHQPMGGAQGQASDIEVEAQQILKIRKSLTEDYAEMSGRSYEKVLQDMDRDNFMSSYEAL 216

Query: 197 DWGVVDKVLMSRIDIE 212
           D+G++DKV+ S++  +
Sbjct: 217 DYGLIDKVIESKLKFK 232


>gi|158316682|ref|YP_001509190.1| endopeptidase Clp [Frankia sp. EAN1pec]
 gi|158112087|gb|ABW14284.1| Endopeptidase Clp [Frankia sp. EAN1pec]
          Length = 236

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 87/185 (47%), Positives = 124/185 (67%), Gaps = 1/185 (0%)

Query: 26  TNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV 85
           T  G     ++ RLL+ RIVF+   +ED +A  ICA+LL L +++P  +I LYINSPGG 
Sbjct: 32  TAAGPFEDQVFHRLLQNRIVFLGSVVEDTIANAICAKLLLLASDDPSADIHLYINSPGGS 91

Query: 86  VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS 145
           V+AGMAIYDTMQ+I   ++T  +G A SMG  LLS+G  G RFALP++R+++HQPSGG  
Sbjct: 92  VSAGMAIYDTMQYIANDVATVALGFAGSMGQFLLSSGAPGKRFALPHSRVMMHQPSGGIG 151

Query: 146 GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           G A+DI   A+ ++  KR + E   ++ G+  E +E   DRD   +A EA D+G+VD+V+
Sbjct: 152 GTATDIAIQAEQLLFTKRLIQERIAEHTGQPVERIEADSDRDRWFTAEEARDYGLVDRVI 211

Query: 206 MSRID 210
             R+D
Sbjct: 212 T-RVD 215


>gi|111115440|ref|YP_710058.1| ATP-dependent Clp protease proteolytic component [Borrelia afzelii
           PKo]
 gi|216263526|ref|ZP_03435521.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           afzelii ACA-1]
 gi|123145670|sp|Q0SMP6|CLPP_BORAP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|110890714|gb|ABH01882.1| ATP-dependent Clp protease proteolytic component [Borrelia afzelii
           PKo]
 gi|215980370|gb|EEC21191.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           afzelii ACA-1]
          Length = 197

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 97/191 (50%), Positives = 141/191 (73%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            L+P V+E T   ER +DIYSRLL+ERI+F++G+I D  A  + AQLLFLE+E+  K+I 
Sbjct: 6   NLIPTVIEHTGNYERVFDIYSRLLRERIIFLSGEINDPKADTVIAQLLFLESEDSNKDIY 65

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LY+NSPGG +TAG+AIYDTMQ+IKP + T C+GQAASMG+ LL+AG KG R +L  +RI+
Sbjct: 66  LYLNSPGGSITAGLAIYDTMQYIKPDVRTICIGQAASMGAFLLAAGAKGKRESLTYSRIM 125

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG SGQASDI   A +I+++K+ + +I     G   E++   ++RD+ M++S+A 
Sbjct: 126 IHQPWGGISGQASDINIQANEILRLKKLIIDIMSNQIGVDKEKLALDMERDYFMTSSDAL 185

Query: 197 DWGVVDKVLMS 207
            +G++D +L+ 
Sbjct: 186 KYGLIDNILVR 196


>gi|116670951|ref|YP_831884.1| ClpP1 peptidase. Serine peptidase. MEROPS family S14 /
           ATP-dependent Clp protease proteolytic subunit ClpP
           [Arthrobacter sp. FB24]
 gi|116611060|gb|ABK03784.1| ATP-dependent Clp protease proteolytic subunit ClpP [Arthrobacter
           sp. FB24]
          Length = 203

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 94/170 (55%), Positives = 119/170 (70%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IY+RLLKERI+++  ++ D  A  IC+QLL L AENP K+I LYINSPGG VTAGMAIYD
Sbjct: 13  IYNRLLKERIIWLGSEVRDENANAICSQLLLLSAENPDKDIYLYINSPGGSVTAGMAIYD 72

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQFI   + T   G AASMG  LLS+G KG R+A PNARIL+HQPSGG  G ASDI+  
Sbjct: 73  TMQFIPNDVVTVATGLAASMGQFLLSSGTKGKRYATPNARILMHQPSGGIGGTASDIKIQ 132

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           A+ I+ +K+ + E+     G+T E + K  DRD   +A EA ++G  DK+
Sbjct: 133 AELILHMKKVMAELTADQTGQTVETILKDNDRDKWFTAPEALEYGFFDKI 182


>gi|225453100|ref|XP_002271649.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 320

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 78/176 (44%), Positives = 124/176 (70%)

Query: 31  RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGM 90
              D  + LL++RIVF+  Q++D  A L+ +QLLFL+AE+ +K+I L+INSPGG VTAG+
Sbjct: 78  EDLDTTNMLLRQRIVFLGSQVDDMTADLVISQLLFLDAEDQEKDIKLFINSPGGSVTAGL 137

Query: 91  AIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASD 150
            IYD M+  K  +ST C+G AASMG+ LL++G KG RF +PN+R+++HQP G   G+A++
Sbjct: 138 GIYDAMKLCKADVSTVCLGLAASMGAFLLASGSKGKRFCMPNSRVMIHQPLGTAGGKATE 197

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           +    ++++  K +LN+I  +  GK  +++E   DRD+ M+A EA ++G++D V+ 
Sbjct: 198 MGIRIREMMYHKIKLNKILSRITGKPEQQIEADTDRDNFMNAWEAKEYGLIDAVID 253


>gi|225021668|ref|ZP_03710860.1| hypothetical protein CORMATOL_01696 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945659|gb|EEG26868.1| hypothetical protein CORMATOL_01696 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 191

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 87/175 (49%), Positives = 125/175 (71%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           S  +Y RLL++RI+F+  Q++D +A  +CAQ+L L AE+P ++ISLYINSPGG VTAGMA
Sbjct: 9   SDSVYERLLRDRIIFLGTQVDDEIANKLCAQILLLSAEDPTRDISLYINSPGGSVTAGMA 68

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYDTM +    I+T+ MG AASMG  LL+ G KG R+ALP+ARI++HQPS G  G A+DI
Sbjct: 69  IYDTMTYSPCDIATYAMGLAASMGQFLLTGGTKGKRYALPHARIMMHQPSAGVGGTAADI 128

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
              A+   + KR + E+  ++ G+T+E++ K  DRD   +A +A ++G+VD V+ 
Sbjct: 129 AIQAEQFAQTKREMAELIAEHSGQTFEQITKDSDRDRWFTAQQALEYGLVDHVVT 183


>gi|284990113|ref|YP_003408667.1| endopeptidase Clp [Geodermatophilus obscurus DSM 43160]
 gi|284063358|gb|ADB74296.1| Endopeptidase Clp [Geodermatophilus obscurus DSM 43160]
          Length = 211

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 87/173 (50%), Positives = 121/173 (69%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL+ERI+F+  Q++D +A  + AQ+L L AE+P+++I LYINSPGG V+AGMAIYD
Sbjct: 26  VYERLLRERIIFLGTQVDDVIANQLAAQMLLLSAEDPKRDIHLYINSPGGSVSAGMAIYD 85

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQFI   ++T+ MG AASMG  LL+AG KG R+ALP+ARI++HQPS G  G A+DI   
Sbjct: 86  TMQFIDCDVATYGMGLAASMGQFLLTAGTKGKRYALPHARIMMHQPSAGVGGTAADIAIQ 145

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A    + K+ LNE+   + G+  E + +  DRD   +A EA ++G VD V+  
Sbjct: 146 ADLFRRTKQELNELQSFHTGQPVERINEDSDRDRWFTAQEALEYGFVDHVVSR 198


>gi|171692433|ref|XP_001911141.1| hypothetical protein [Podospora anserina S mat+]
 gi|170946165|emb|CAP72966.1| unnamed protein product [Podospora anserina S mat+]
          Length = 254

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 91/202 (45%), Positives = 142/202 (70%), Gaps = 7/202 (3%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            +P + E T  G R+ DI+S+LL+ERIV + G I+D ++  I AQLL+LE++NP K I++
Sbjct: 40  PMPYITEVTAGGWRTSDIFSKLLQERIVCLNGAIDDTVSASIVAQLLWLESDNPDKPITM 99

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V++G+AIYDTM +IK P+ST C+G AASM ++LL  GE G R+ALP++ I++
Sbjct: 100 YINSPGGEVSSGLAIYDTMTYIKSPVSTVCVGGAASMAAILLIGGEPGKRYALPHSSIMV 159

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT--YEE-----VEKTLDRDHIM 190
           HQP GG  GQASDI  +A  I +++ ++N+I   +  K+  +E+     +   ++RD  +
Sbjct: 160 HQPLGGTRGQASDILIYANQIQRLRDQINKIVQSHINKSFGFEKYDMQAINDMMERDKYL 219

Query: 191 SASEACDWGVVDKVLMSRIDIE 212
           +A EA D+G++D++L  R+  +
Sbjct: 220 TAEEAKDFGIIDEILHRRVKND 241


>gi|260591256|ref|ZP_05856714.1| Clp protease [Prevotella veroralis F0319]
 gi|260537121|gb|EEX19738.1| Clp protease [Prevotella veroralis F0319]
          Length = 237

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 88/190 (46%), Positives = 134/190 (70%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ ERI+F+  Q++D+ A  I AQLL+L++ +P K+IS+YI
Sbjct: 32  PYILEERQLNVTQMDVFSRLMMERIIFLGTQVDDYTANTIQAQLLYLDSVDPGKDISIYI 91

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VTAG+ IYDTMQFI   ++T C G AASM ++LL AG++G R AL ++R+++HQ
Sbjct: 92  NSPGGSVTAGLGIYDTMQFISSDVATLCTGMAASMAAVLLVAGKEGKRSALKHSRVMIHQ 151

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I+K K+ L  I   +  +++E+V    DR++ M+A EA  +G
Sbjct: 152 PLGGVQGQASDIEIEAKEIMKFKKELYTIISDHSHQSFEKVWNDSDRNYWMNAEEAKAYG 211

Query: 200 VVDKVLMSRI 209
           ++D VL+ + 
Sbjct: 212 MIDDVLVKKP 221


>gi|269955919|ref|YP_003325708.1| endopeptidase Clp [Xylanimonas cellulosilytica DSM 15894]
 gi|269304600|gb|ACZ30150.1| Endopeptidase Clp [Xylanimonas cellulosilytica DSM 15894]
          Length = 214

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 90/173 (52%), Positives = 126/173 (72%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IY+RLLKERI+++  ++ D  A  ICAQ++ L AE+P K+I LYINSPGG +TAGMAIYD
Sbjct: 27  IYNRLLKERIIWLGSEVRDENANAICAQMMLLAAEDPDKDIWLYINSPGGSITAGMAIYD 86

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQFI+P ++T  MG AASMG  LLS+G KG R+A P+AR+++HQPSGG  G A+D+  +
Sbjct: 87  TMQFIQPDVATVAMGMAASMGQFLLSSGAKGKRYATPHARVMMHQPSGGIGGTATDVRIN 146

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           AQ I+ +K  L E+  +  GK  E++ K  DRD   +A+EA ++G +D V+ +
Sbjct: 147 AQLIMHMKTVLAELTAEQTGKPLEQILKDNDRDSWFTATEALEYGFIDHVVEN 199


>gi|326693258|ref|ZP_08230263.1| ATP-dependent Clp protease proteolytic subunit [Leuconostoc
           argentinum KCTC 3773]
          Length = 200

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 103/197 (52%), Positives = 135/197 (68%), Gaps = 2/197 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           + P V+EQT  G  SYD+ SRLLK+RIV V G+IED MAT I AQLLFLEA++P KEIS+
Sbjct: 1   MWPGVIEQTANGRESYDLPSRLLKDRIVLVQGEIEDSMATSIVAQLLFLEAQDPTKEISM 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG++I DTM FIK P++T  MG AASMG+++ S+GEKG RF LPNA  L+
Sbjct: 61  YINSPGGSVTAGLSITDTMNFIKAPVTTIVMGLAASMGTIIASSGEKGHRFMLPNAEYLI 120

Query: 138 HQPSGGFSG--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP GG +G  Q +D+   A+ + K + +LN I     GK  E +    +RD+ MSA E 
Sbjct: 121 HQPMGGAAGGTQQTDMAIIAEQLTKTRAKLNRILADASGKDLETIAHDTERDYWMSAEET 180

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G +D +L    +  
Sbjct: 181 LEYGFIDGILTKSGEKP 197


>gi|145596011|ref|YP_001160308.1| endopeptidase Clp [Salinispora tropica CNB-440]
 gi|145305348|gb|ABP55930.1| Endopeptidase Clp [Salinispora tropica CNB-440]
          Length = 213

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 94/189 (49%), Positives = 127/189 (67%)

Query: 27  NRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVV 86
           N G     +Y+RLLKERI+F+  ++ D +A  ICAQLL L AE+P ++I+L+INSPGG V
Sbjct: 21  NIGNLDDSVYNRLLKERIIFLGSEVTDQVANRICAQLLLLAAEDPDRDINLWINSPGGSV 80

Query: 87  TAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG 146
            +GMAIYDTMQFI   +ST  MG AASMG LLL AG KG R+ALP+ARI++HQPSGG  G
Sbjct: 81  YSGMAIYDTMQFIDNDVSTVAMGMAASMGQLLLCAGTKGKRYALPHARIMMHQPSGGMGG 140

Query: 147 QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
            ASDI   A+ ++  KR   E    + G++  ++E   DRD   +A EA ++G +DKV+ 
Sbjct: 141 TASDIAIQAEQMLYTKRMFQERVAFHTGQSQAQIEADSDRDRWFTAQEAMEYGFIDKVIT 200

Query: 207 SRIDIEEKS 215
               + E +
Sbjct: 201 GAAQVPEGA 209


>gi|258648499|ref|ZP_05735968.1| Clp protease [Prevotella tannerae ATCC 51259]
 gi|260851264|gb|EEX71133.1| Clp protease [Prevotella tannerae ATCC 51259]
          Length = 235

 Score =  235 bits (601), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 87/188 (46%), Positives = 131/188 (69%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  QI+D+ A  + AQLL+L++ +P K+IS+YI
Sbjct: 48  PYILEERQLNVTQMDVFSRLMMDRIIFLGTQIDDYTANTLQAQLLYLDSADPGKDISIYI 107

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V AG+ IYDTMQFI   ++T C G AASM ++LL AG++G R  L ++R+++HQ
Sbjct: 108 NSPGGSVYAGLGIYDTMQFIGSDVATICTGMAASMAAVLLVAGKEGKRSGLKHSRVMIHQ 167

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I K+K+ L  I   +    +E+V +  DRD+ M+A EA ++G
Sbjct: 168 PMGGAQGQASDIEITAREIQKLKKELYTIIADHSHTDFEKVWQDSDRDYWMTAEEAKEYG 227

Query: 200 VVDKVLMS 207
           ++DKVL  
Sbjct: 228 MIDKVLTK 235


>gi|224532269|ref|ZP_03672901.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           valaisiana VS116]
 gi|224511734|gb|EEF82140.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           valaisiana VS116]
          Length = 197

 Score =  235 bits (601), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 95/191 (49%), Positives = 141/191 (73%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            L+P V+E T   ER +DIYSRLL+ERI+F++G+I D  A  + AQLLFLE+E+  K+I 
Sbjct: 6   NLIPTVIEHTGNYERVFDIYSRLLRERIIFLSGEINDPKADTVIAQLLFLESEDSSKDIY 65

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LY+NSPGG +TAG+AIYDTMQ+IKP + T C+GQAASMG+ LL++G KG R +L  +RI+
Sbjct: 66  LYLNSPGGSITAGLAIYDTMQYIKPDVRTICIGQAASMGAFLLASGAKGKRESLTYSRIM 125

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG SGQASDI   A +I+++K+ + +I     G   E++   ++RD+ M++++A 
Sbjct: 126 IHQPWGGISGQASDINIQANEILRLKKLIIDIMSNQIGIDKEKLALDMERDYFMTSNDAL 185

Query: 197 DWGVVDKVLMS 207
            +G++D +L+ 
Sbjct: 186 KYGLIDSILVR 196


>gi|213966160|ref|ZP_03394346.1| Clp protease [Corynebacterium amycolatum SK46]
 gi|213951175|gb|EEB62571.1| Clp protease [Corynebacterium amycolatum SK46]
          Length = 190

 Score =  235 bits (601), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 86/177 (48%), Positives = 125/177 (70%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           ++ +LLKERI+++  Q++D +A  +C Q+L L AE+P+ +ISLYINSPGG VTAGMAIYD
Sbjct: 12  VFDKLLKERIIWLGEQVDDEIANKLCGQMLLLAAEDPESDISLYINSPGGSVTAGMAIYD 71

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQF+   ++T+ MG AASMG  LL+AG KG R+ALP+ARI++HQPS G  G ASDI   
Sbjct: 72  TMQFVPCDVATYGMGLAASMGQFLLAAGAKGKRYALPHARIMMHQPSAGIGGTASDITIQ 131

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           A+     K+ +  +  ++ G+  E +E+  DRD   +A+EA ++G+VD V+ +  D 
Sbjct: 132 AEQFAATKKEMARLIAQHTGQPVERIEEDSDRDRWFTAAEAKEYGLVDHVVTALKDT 188


>gi|302345891|ref|YP_003814244.1| Clp protease [Prevotella melaninogenica ATCC 25845]
 gi|302149660|gb|ADK95922.1| Clp protease [Prevotella melaninogenica ATCC 25845]
          Length = 230

 Score =  235 bits (601), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 87/190 (45%), Positives = 135/190 (71%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ ERI+F+  Q++D+ A  I AQLL+L++ +P K+IS+YI
Sbjct: 32  PYILEERQLNVTQMDVFSRLMMERIIFLGTQVDDYSANTIQAQLLYLDSVDPGKDISIYI 91

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VTAG+ IYDTMQFI   ++T C G AASM ++LL AG++G R AL ++R+++HQ
Sbjct: 92  NSPGGSVTAGLGIYDTMQFISSDVATLCTGMAASMAAVLLVAGKEGKRSALKHSRVMIHQ 151

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I K K+ L  I  ++  + +++V    DR++ M++ EA ++G
Sbjct: 152 PLGGVQGQASDIEIEAREIQKFKKELYNIISEHSHQPFDKVWNDSDRNYWMTSEEAKEYG 211

Query: 200 VVDKVLMSRI 209
           ++D+VLM + 
Sbjct: 212 MIDEVLMRKP 221


>gi|111223668|ref|YP_714462.1| ATP-dependent Clp protease proteolytic subunit [Frankia alni
           ACN14a]
 gi|111151200|emb|CAJ62911.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
           [Frankia alni ACN14a]
          Length = 221

 Score =  235 bits (601), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 98/192 (51%), Positives = 142/192 (73%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P +VE+T+RGE   D YS+LLKERIVF+  Q++D  A  + AQLLFLE+E+P ++IS+
Sbjct: 19  VLPNIVERTSRGEYGMDPYSKLLKERIVFLGVQVDDVSANDVMAQLLFLESEDPDRDISI 78

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+  AIYDTMQF++P IST CMGQAAS  ++LL+AG  G RFAL N+RIL+
Sbjct: 79  YINSPGGSFTSLTAIYDTMQFVRPDISTICMGQAASAAAVLLAAGTPGKRFALENSRILI 138

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPS    GQ+SD+E  A++I++++     +  ++ G++  E+ +  +RD I SA+EA +
Sbjct: 139 HQPSAQGEGQSSDLEIQAREILRVRALQETLLARHTGRSETEIRRDTERDKIFSAAEAKE 198

Query: 198 WGVVDKVLMSRI 209
           +G+VD V+ SR 
Sbjct: 199 YGLVDDVITSRK 210


>gi|119963474|ref|YP_948116.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Arthrobacter
           aurescens TC1]
 gi|119950333|gb|ABM09244.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Arthrobacter
           aurescens TC1]
          Length = 212

 Score =  235 bits (601), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 92/170 (54%), Positives = 122/170 (71%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IY+RLLKERI+++  ++ D  A  IC+QLL L AE+P+K+I LYINSPGG VTAGMAIYD
Sbjct: 22  IYNRLLKERIIWLGSEVRDENANAICSQLLLLSAEDPEKDIYLYINSPGGSVTAGMAIYD 81

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQFI   + T   G AASMG  LLS+G KG R+A PNARIL+HQPSGG  G ASDI+  
Sbjct: 82  TMQFIPNDVVTVATGLAASMGQFLLSSGTKGKRYATPNARILMHQPSGGIGGTASDIKIQ 141

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           A+ I+ +K+ + E+  +  G++ E + K  DRD   +A+EA ++G  DK+
Sbjct: 142 AELILHMKKVMAELTAEQTGQSVETILKDNDRDKWFTATEALEYGFFDKI 191


>gi|307328456|ref|ZP_07607631.1| Endopeptidase Clp [Streptomyces violaceusniger Tu 4113]
 gi|306885868|gb|EFN16879.1| Endopeptidase Clp [Streptomyces violaceusniger Tu 4113]
          Length = 204

 Score =  235 bits (601), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 95/196 (48%), Positives = 130/196 (66%), Gaps = 1/196 (0%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
             +P    +   G     +Y+RLL ERI+F+  Q++D +A  I AQLL L A+ P K+I 
Sbjct: 3   NTMPSAAGEPTVGGLGDQVYNRLLGERIIFLGQQVDDDIANKITAQLLLLAAD-PDKDIY 61

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG ++AGMAIYDTMQ+I+  + T  MG AASMG  LLSAG  G RFALPNA IL
Sbjct: 62  LYINSPGGSISAGMAIYDTMQYIQNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEIL 121

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPS G +G ASDI+ HA+ ++  K+R+ E+   + G+T E++ +  DRD   SA EA 
Sbjct: 122 IHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSFHTGQTVEQIVRDSDRDRWFSAQEAK 181

Query: 197 DWGVVDKVLMSRIDIE 212
           ++G+VD V+ S   + 
Sbjct: 182 EYGLVDDVMTSASSVP 197


>gi|15594956|ref|NP_212745.1| ATP-dependent Clp protease proteolytic subunit [Borrelia
           burgdorferi B31]
 gi|18202051|sp|O51556|CLPP1_BORBU RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|2688532|gb|AAC66964.1| ATP-dependent Clp protease proteolytic component (clpP-1) [Borrelia
           burgdorferi B31]
          Length = 197

 Score =  235 bits (601), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 96/191 (50%), Positives = 140/191 (73%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            L+P V+E T   ER +DIYSRLL+ERI+F++G+I D  A  + AQLLFLE+E+  K+I 
Sbjct: 6   NLIPTVIENTGNYERVFDIYSRLLRERIIFLSGEINDPKADTVIAQLLFLESEDSSKDIY 65

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LY+NSPGG +TAG+AIYDTMQ+IKP + T C+GQAASMG+ LL+ G KG R +L  +RI+
Sbjct: 66  LYLNSPGGSITAGLAIYDTMQYIKPDVRTICIGQAASMGAFLLAGGAKGKRESLTYSRIM 125

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG SGQASDI   A +I+++K+ + +I     G   E++   ++RD+ M++S+A 
Sbjct: 126 IHQPWGGISGQASDINIQANEILRLKKLIIDIMSNQIGVDKEKLALDMERDYFMTSSDAL 185

Query: 197 DWGVVDKVLMS 207
            +G++D +L+ 
Sbjct: 186 KYGLIDSILVR 196


>gi|238060619|ref|ZP_04605328.1| endopeptidase Clp [Micromonospora sp. ATCC 39149]
 gi|237882430|gb|EEP71258.1| endopeptidase Clp [Micromonospora sp. ATCC 39149]
          Length = 213

 Score =  235 bits (601), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 95/189 (50%), Positives = 126/189 (66%)

Query: 27  NRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVV 86
           N G     +Y+RLLKERI+F+  ++ D +A  ICAQLL L AE+P ++I L+INSPGG V
Sbjct: 21  NIGNLDDSVYNRLLKERIIFLGSEVNDQVANRICAQLLLLAAEDPDRDIFLWINSPGGSV 80

Query: 87  TAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG 146
            +GMAIYDTMQ+I   +ST  MG AASMG LLL AG KG R+ALP+ARI++HQPSGG  G
Sbjct: 81  YSGMAIYDTMQYIDNDVSTVAMGMAASMGQLLLCAGTKGKRYALPHARIMMHQPSGGMGG 140

Query: 147 QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
            ASDI   A+ ++  KR   E    + G+T  ++E   DRD   +A EA D+G +DKV+ 
Sbjct: 141 TASDIAIQAEQMLYTKRMFQERVAFHTGQTQAQIEADSDRDRWFTAQEAMDYGFIDKVIT 200

Query: 207 SRIDIEEKS 215
               + E +
Sbjct: 201 GAAQVPEGA 209


>gi|224534182|ref|ZP_03674761.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           spielmanii A14S]
 gi|224514543|gb|EEF84858.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           spielmanii A14S]
          Length = 197

 Score =  235 bits (601), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 97/191 (50%), Positives = 141/191 (73%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            L+P V+E T   ER +DIYSRLL+ERI+F++G+I D  A  + AQLLFLE+E+  K+I 
Sbjct: 6   NLIPTVIEHTGNYERVFDIYSRLLRERIIFLSGEINDLKADTVIAQLLFLESEDSNKDIY 65

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LY+NSPGG +TAG+AIYDTMQ+IKP + T C+GQAASMG+ LL+AG KG R +L  +RI+
Sbjct: 66  LYLNSPGGSITAGLAIYDTMQYIKPDVRTICIGQAASMGAFLLAAGAKGKRESLTYSRIM 125

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG SGQASDI   A +I+++K+ + +I     G   E++   ++RD+ M++S+A 
Sbjct: 126 IHQPWGGISGQASDINIQANEILRLKKLIIDIMSNQIGVDKEKLALDMERDYFMTSSDAL 185

Query: 197 DWGVVDKVLMS 207
            +G++D +L+ 
Sbjct: 186 KYGLIDSILVR 196


>gi|307566218|ref|ZP_07628666.1| endopeptidase Clp [Prevotella amnii CRIS 21A-A]
 gi|307345076|gb|EFN90465.1| endopeptidase Clp [Prevotella amnii CRIS 21A-A]
          Length = 221

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 87/190 (45%), Positives = 133/190 (70%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  QI+D+ A  + AQLL+L++ +  K+IS+YI
Sbjct: 32  PYILEERQLNVTQMDVFSRLMMDRIIFLGTQIDDYTANTLQAQLLYLDSVDSGKDISIYI 91

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VTAG+ IYDTMQFI   ++T C G AASMG++LL AG++G R  LP++R+++HQ
Sbjct: 92  NSPGGSVTAGLGIYDTMQFISSDVATICTGMAASMGAVLLVAGQEGKRSVLPHSRVMIHQ 151

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I K K+ L  I   +  + +E+V    DR++ M+A EA  +G
Sbjct: 152 PLGGVQGQASDIEIEAKEIQKFKKELYTIISTHSHQPFEKVWNDSDRNYWMTAEEAKAYG 211

Query: 200 VVDKVLMSRI 209
           ++D+VL+ + 
Sbjct: 212 MIDEVLVRKK 221


>gi|171780217|ref|ZP_02921121.1| hypothetical protein STRINF_02005 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281565|gb|EDT47000.1| hypothetical protein STRINF_02005 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 196

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 94/192 (48%), Positives = 140/192 (72%), Gaps = 2/192 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG ++D+MA  I AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVDDNMANSIIAQLLFLDAQDNTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q SD+   A+ ++K ++ L +I   N G++ E+V    +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQSDMAIAAEHLLKTRQNLEQILADNSGQSLEKVHADAERDNWMSAQET 180

Query: 196 CDWGVVDKVLMS 207
            ++G +D+++++
Sbjct: 181 LEYGFIDEIMVN 192


>gi|172041060|ref|YP_001800774.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           urealyticum DSM 7109]
 gi|171852364|emb|CAQ05340.1| ATP-dependent Clp protease proteolytic subunit 1 [Corynebacterium
           urealyticum DSM 7109]
          Length = 198

 Score =  235 bits (600), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 90/176 (51%), Positives = 124/176 (70%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           ++ RLL+ERI+F+  Q++D +A  +CAQ+L L AE+P+K+ISLYINSPGG VTAGMAI+D
Sbjct: 22  VFERLLRERIIFLGSQVDDEIANKLCAQILLLAAEDPEKDISLYINSPGGSVTAGMAIFD 81

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ+    I+T+ MG AASMG  LLSAG KG R+ALP+ARI++HQPS G  G A+DI   
Sbjct: 82  TMQYAPCDIATYGMGLAASMGQFLLSAGTKGKRYALPHARIMMHQPSAGVGGTAADIAIQ 141

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           A+     KR + E+     G+T E++ K  DRD   +A +A ++G VD V+ S  +
Sbjct: 142 AEQFAHTKREMAELIAGFTGQTVEQITKDSDRDRWFTAEQAKEYGFVDHVISSAKE 197


>gi|189485256|ref|YP_001956197.1| ATP-dependent Clp protease protease subunit P [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
 gi|170287215|dbj|BAG13736.1| ATP-dependent Clp protease protease subunit P [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
          Length = 203

 Score =  235 bits (600), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 101/197 (51%), Positives = 148/197 (75%), Gaps = 7/197 (3%)

Query: 18  LVPMVVEQTNRGER-SYDIYSRLLKERIVFVTGQ---IEDHMATLICAQLLFLEAENPQK 73
           L+P V+E+ N+G   +YD+YSRLLK+RI+FV GQ   +    A ++ AQLL+L++E+  K
Sbjct: 4   LIPTVIERWNQGAAVTYDLYSRLLKDRIIFVGGQDGAVTTDSANVLIAQLLYLDSEDQGK 63

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +ISLYINSPGG+V+AG+A+YDTMQFIK PI+T CMG A S G++LL+AG KG R+AL ++
Sbjct: 64  DISLYINSPGGMVSAGLAVYDTMQFIKSPITTICMGMAMSFGAVLLAAGTKGKRYALTHS 123

Query: 134 RILLHQP---SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           RI++HQP    GG SG  SDI+  A+++V  K++L+ I  ++ GKT E V K  DR+  M
Sbjct: 124 RIMIHQPLIYGGGLSGTVSDIDIEAKELVSTKQKLSGIIAEHTGKTSERVLKDTDRNCYM 183

Query: 191 SASEACDWGVVDKVLMS 207
           SA EA ++G++D+V+++
Sbjct: 184 SAQEAKEYGLIDEVIVN 200


>gi|254415772|ref|ZP_05029530.1| Clp protease [Microcoleus chthonoplastes PCC 7420]
 gi|196177478|gb|EDX72484.1| Clp protease [Microcoleus chthonoplastes PCC 7420]
          Length = 206

 Score =  235 bits (600), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 104/201 (51%), Positives = 142/201 (70%), Gaps = 7/201 (3%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           MVVEQ+  GER++DIYSRLL+ERIVF+  +I D +A  I AQLL+LEAE+P K+I LYI+
Sbjct: 1   MVVEQSGVGERAFDIYSRLLRERIVFLGTRINDVVADSIIAQLLYLEAEDPTKDIQLYIH 60

Query: 81  SPGGV------VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           SPGG       V AGMAIYDTMQ I+P I T C G A  MG +LL+ G  G R +LPNAR
Sbjct: 61  SPGGPILGLGGVIAGMAIYDTMQQIRPDIVTICFGAATDMGVILLTGGTPGKRMSLPNAR 120

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++ QP GG  GQA DIE  A++I+  K +LNE+   + G+ YE +    +RD  +SA+E
Sbjct: 121 IMISQPLGGAQGQAVDIEIQAKEILYHKNQLNELMAYHTGQPYERIATDTERDFFLSAAE 180

Query: 195 ACDWGVVDKVLMSRIDIEEKS 215
           A ++G+VD+V+ SR +++ ++
Sbjct: 181 AKEYGLVDQVI-SRENLKSEA 200


>gi|296270440|ref|YP_003653072.1| endopeptidase Clp [Thermobispora bispora DSM 43833]
 gi|296093227|gb|ADG89179.1| Endopeptidase Clp [Thermobispora bispora DSM 43833]
          Length = 215

 Score =  235 bits (600), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 92/193 (47%), Positives = 138/193 (71%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T+ G +  + Y++L ++RI+F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 15  VLPSFVERTSYGVKEMNPYNKLFEDRIIFLGVQIDDASANDVMAQLLTLESLDPDRDISI 74

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQF++P I T C+GQAAS  ++LL+ G  G RFALPNAR+L+
Sbjct: 75  YINSPGGSFTAMTAIYDTMQFVRPDIQTVCLGQAASAAAVLLAGGTPGKRFALPNARVLI 134

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP     GQ SDIE  A++I++++  L EI  K+ GK+ E++ K ++RD I++A EA +
Sbjct: 135 HQPYTEGGGQGSDIEIQAREILRMRSLLEEIIAKHTGKSPEQIRKDIERDKILTAQEAKE 194

Query: 198 WGVVDKVLMSRID 210
           +G+VD ++ SR  
Sbjct: 195 YGLVDDIIPSRKK 207


>gi|187918471|ref|YP_001884034.1| ATP-dependent Clp protease proteolytic subunit [Borrelia hermsii
           DAH]
 gi|119861319|gb|AAX17114.1| ATP-dependent Clp protease proteolytic subunit [Borrelia hermsii
           DAH]
          Length = 199

 Score =  235 bits (600), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 94/196 (47%), Positives = 139/196 (70%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
            +    LVP VVE T   ER +DIYSRLL++RI+F++G+I D  A  + AQLLFLE+E+ 
Sbjct: 3   REYMHNLVPTVVEYTGNYERVFDIYSRLLRDRIIFLSGEINDIRADTVIAQLLFLESEDS 62

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K+I +YINSPGG +T+G+AIYDTMQ+IKP + T C+GQAASM + LL+ G  G R +L 
Sbjct: 63  KKDIYVYINSPGGSITSGLAIYDTMQYIKPDVRTICIGQAASMAAFLLAGGAIGKRESLS 122

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
            +RI++HQP GG  GQASDI   A +I+++KR + +I     G + E++   ++RD+ M+
Sbjct: 123 YSRIMIHQPWGGIGGQASDISIQANEIIRLKRLIIDIMSNKIGVSKEKLSLDIERDYFMT 182

Query: 192 ASEACDWGVVDKVLMS 207
             +A D+G++D +L+ 
Sbjct: 183 PKDALDYGIIDGILVR 198


>gi|302542937|ref|ZP_07295279.1| Clp protease [Streptomyces hygroscopicus ATCC 53653]
 gi|302460555|gb|EFL23648.1| Clp protease [Streptomyces himastatinicus ATCC 53653]
          Length = 201

 Score =  235 bits (600), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 90/192 (46%), Positives = 138/192 (71%), Gaps = 1/192 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVE+T +GER+YDIYSRLL ERI+F+  +I+D +A ++ AQLL LE+  P++EI++Y
Sbjct: 6   IPTVVERTTQGERAYDIYSRLLSERIIFLGTEIDDGVANVVIAQLLHLESSGPEQEIAIY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  T+ MAIYDTM F+  PISTFC+GQAAS  ++LL+ G+ G RF L ++R+LL 
Sbjct: 66  INSPGGSYTSLMAIYDTMTFVTAPISTFCVGQAASTAAVLLAGGDPGRRFVLEHSRVLLG 125

Query: 139 QPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP+ GG  G  SD+   A+++++I+ ++ E+  ++      ++   +DRD + +A EA  
Sbjct: 126 QPATGGARGTVSDLSLQAKEMLRIRAQVEEVLSRHTPHDVAKLRADMDRDRVFTAEEAVT 185

Query: 198 WGVVDKVLMSRI 209
           +G+ D+VL  R+
Sbjct: 186 YGLADEVLSRRL 197


>gi|325300151|ref|YP_004260068.1| ATP-dependent Clp protease proteolytic subunit [Bacteroides
           salanitronis DSM 18170]
 gi|324319704|gb|ADY37595.1| ATP-dependent Clp protease proteolytic subunit [Bacteroides
           salanitronis DSM 18170]
          Length = 222

 Score =  235 bits (600), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 85/192 (44%), Positives = 133/192 (69%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  QI+D+ A  + AQLL+L++ +  K+IS+YI
Sbjct: 31  PYILEERQLNVTQLDVFSRLMMDRIIFLGTQIDDYTANTLQAQLLYLDSVDSGKDISIYI 90

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V AG+ IYDTMQFI   ++T C G AASM ++LL AG++G R AL ++R+++HQ
Sbjct: 91  NSPGGSVYAGLGIYDTMQFIGSDVATICTGMAASMAAVLLVAGKEGKRSALTHSRVMIHQ 150

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I K+K+ L  I  ++    +++V    DRD+ M+A EA ++G
Sbjct: 151 PMGGAQGQASDIEITAREIQKLKKELYTIIAEHSHTDFDKVWADSDRDYWMTAQEAKEYG 210

Query: 200 VVDKVLMSRIDI 211
           ++D+VL  +  +
Sbjct: 211 MIDEVLSRKSAL 222


>gi|289168250|ref|YP_003446519.1| ATP-dependent CLP protease proteolytic subunit [Streptococcus mitis
           B6]
 gi|288907817|emb|CBJ22657.1| ATP-dependent CLP protease proteolytic subunit [Streptococcus mitis
           B6]
          Length = 196

 Score =  235 bits (600), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 93/192 (48%), Positives = 140/192 (72%), Gaps = 2/192 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K ++ L +I  +N G++ E+V    +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRKTLEKILAENSGQSIEKVHADAERDNWMSAQET 180

Query: 196 CDWGVVDKVLMS 207
            ++G +D+++ +
Sbjct: 181 LEYGFIDEIMAN 192


>gi|303236896|ref|ZP_07323475.1| Clp protease [Prevotella disiens FB035-09AN]
 gi|302483064|gb|EFL46080.1| Clp protease [Prevotella disiens FB035-09AN]
          Length = 228

 Score =  235 bits (600), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 89/190 (46%), Positives = 139/190 (73%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  QI+D+ A  + AQLL+L++ +P K+IS+YI
Sbjct: 39  PYILEERQLNVTQMDVFSRLMMDRIIFLGTQIDDYTANTLQAQLLYLDSVDPGKDISIYI 98

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VTAG+ IYDTMQFI   ++T C G AASMG++LL AG++G R ALP++R+++HQ
Sbjct: 99  NSPGGSVTAGLGIYDTMQFITSDVATICTGMAASMGAVLLVAGQEGKRSALPHSRVMIHQ 158

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I+K K+ L  I   +  ++YE+V +  DR++ M+A EA ++G
Sbjct: 159 PLGGVQGQASDIEIEAKEILKFKKELYTIISNHSHQSYEKVYQDSDRNYWMTAEEAKEYG 218

Query: 200 VVDKVLMSRI 209
           ++D++L+ + 
Sbjct: 219 MIDQILIRKK 228


>gi|239983580|ref|ZP_04706104.1| ATP-dependent Clp protease proteolytic subunit 2 [Streptomyces
           albus J1074]
 gi|291455392|ref|ZP_06594782.1| ATP-dependent Clp protease proteolytic subunit 2 [Streptomyces
           albus J1074]
 gi|291358341|gb|EFE85243.1| ATP-dependent Clp protease proteolytic subunit 2 [Streptomyces
           albus J1074]
          Length = 200

 Score =  235 bits (600), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 90/191 (47%), Positives = 134/191 (70%), Gaps = 1/191 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVE+T RGER++DIYS LL ERI+F+  +I+D +A ++ AQLL LE+  P +EI+LY
Sbjct: 6   IPTVVERTARGERAFDIYSSLLSERIIFLGTEIDDGVANVVIAQLLHLESVAPDQEIALY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  T+ MA+YDTM F+  P+STFC+GQAAS  ++LL+ G+ G R  L +AR+LL 
Sbjct: 66  INSPGGSYTSLMAVYDTMTFVSAPLSTFCVGQAASTAAVLLAGGDPGRRLILEHARVLLG 125

Query: 139 QP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP SGG  G  SD+   A+++ +++ +  E+  ++ G + E +   +DRD + +A EA  
Sbjct: 126 QPASGGSQGTVSDLTVQAKEVARVRSQTEEVLSRHTGHSVERLRSDMDRDKVFTAEEAVA 185

Query: 198 WGVVDKVLMSR 208
           +G+ D+VL  R
Sbjct: 186 YGLADEVLTRR 196


>gi|212690529|ref|ZP_03298657.1| hypothetical protein BACDOR_00011 [Bacteroides dorei DSM 17855]
 gi|237708014|ref|ZP_04538495.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacteroides sp.
           9_1_42FAA]
 gi|237725286|ref|ZP_04555767.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacteroides sp.
           D4]
 gi|265754199|ref|ZP_06089388.1| Clp protease [Bacteroides sp. 3_1_33FAA]
 gi|212666878|gb|EEB27450.1| hypothetical protein BACDOR_00011 [Bacteroides dorei DSM 17855]
 gi|229436552|gb|EEO46629.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacteroides dorei
           5_1_36/D4]
 gi|229458000|gb|EEO63721.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacteroides sp.
           9_1_42FAA]
 gi|263234908|gb|EEZ20463.1| Clp protease [Bacteroides sp. 3_1_33FAA]
          Length = 223

 Score =  235 bits (600), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 85/190 (44%), Positives = 129/190 (67%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  QI+D+ A  + AQLL+L++    K+IS+YI
Sbjct: 31  PYILEERQLNVTQLDVFSRLMMDRIIFLGTQIDDYTANTLQAQLLYLDSVESGKDISIYI 90

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V AG+ IYDTMQFI   ++T C G AASM ++LL AG +G R AL ++R+++HQ
Sbjct: 91  NSPGGSVYAGLGIYDTMQFINSDVATICTGMAASMAAVLLVAGTEGKRSALTHSRVMIHQ 150

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I K+K+ L  I   +    +++V    DRD+ M+A EA ++G
Sbjct: 151 PMGGAQGQASDIEITAREIQKLKKELYTIIADHSHTDFDKVWADSDRDYWMTAQEAKEYG 210

Query: 200 VVDKVLMSRI 209
           ++D+VL  + 
Sbjct: 211 MIDEVLSRKP 220


>gi|219684233|ref|ZP_03539177.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           garinii PBr]
 gi|219685103|ref|ZP_03539923.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           garinii Far04]
 gi|219672222|gb|EED29275.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           garinii PBr]
 gi|219673199|gb|EED30218.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
           garinii Far04]
          Length = 197

 Score =  235 bits (600), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 94/191 (49%), Positives = 140/191 (73%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            L+P V+E T   ER +DIYSRLL+ERI+F++G+I D  A  + AQLLFLE+E+  K+I 
Sbjct: 6   NLIPTVIEHTGNYERVFDIYSRLLRERIIFLSGEINDPKADTVIAQLLFLESEDSNKDIY 65

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LY+NSPGG +TAG+AIYDTMQ+IKP + T C+GQAASMG+ LL+ G +G R +L  +RI+
Sbjct: 66  LYLNSPGGSITAGLAIYDTMQYIKPDVRTICIGQAASMGAFLLAGGARGKRESLAYSRIM 125

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG SGQASDI   A +I+++K+ + +I     G   E++   ++RD+ M++++A 
Sbjct: 126 IHQPWGGISGQASDINIQANEILRLKKLIIDIMSNQIGVDKEKLALDMERDYFMTSNDAL 185

Query: 197 DWGVVDKVLMS 207
            +G++D +L+ 
Sbjct: 186 KYGLIDSILVR 196


>gi|150003037|ref|YP_001297781.1| ATP-dependent Clp protease proteolytic subunit [Bacteroides
           vulgatus ATCC 8482]
 gi|254883675|ref|ZP_05256385.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacteroides sp.
           4_3_47FAA]
 gi|294775661|ref|ZP_06741169.1| Clp protease [Bacteroides vulgatus PC510]
 gi|319642188|ref|ZP_07996848.1| ATP-dependent Clp protease proteolytic subunit [Bacteroides sp.
           3_1_40A]
 gi|149931461|gb|ABR38159.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacteroides
           vulgatus ATCC 8482]
 gi|254836468|gb|EET16777.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacteroides sp.
           4_3_47FAA]
 gi|294450505|gb|EFG18997.1| Clp protease [Bacteroides vulgatus PC510]
 gi|317386174|gb|EFV67093.1| ATP-dependent Clp protease proteolytic subunit [Bacteroides sp.
           3_1_40A]
          Length = 223

 Score =  235 bits (600), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 85/190 (44%), Positives = 129/190 (67%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  QI+D+ A  + AQLL+L++    K+IS+YI
Sbjct: 31  PYILEERQLNVTQLDVFSRLMMDRIIFLGTQIDDYTANTLQAQLLYLDSVESGKDISIYI 90

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V AG+ IYDTMQFI   ++T C G AASM ++LL AG +G R AL ++R+++HQ
Sbjct: 91  NSPGGSVYAGLGIYDTMQFINSDVATICTGMAASMAAVLLVAGTEGKRSALTHSRVMIHQ 150

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I K+K+ L  I   +    +++V    DRD+ M+A EA ++G
Sbjct: 151 PMGGAQGQASDIEITAREIQKLKKELYTIIADHSHTDFDKVWADSDRDYWMTAQEAKEYG 210

Query: 200 VVDKVLMSRI 209
           ++D+VL  + 
Sbjct: 211 MIDEVLSRKP 220


>gi|159039408|ref|YP_001538661.1| endopeptidase Clp [Salinispora arenicola CNS-205]
 gi|157918243|gb|ABV99670.1| Endopeptidase Clp [Salinispora arenicola CNS-205]
          Length = 213

 Score =  235 bits (600), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 95/189 (50%), Positives = 127/189 (67%)

Query: 27  NRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVV 86
           N G     +Y+RLLKERI+F+  ++ D +A  ICAQLL L AE+P ++I+L+INSPGG V
Sbjct: 21  NIGNLDDSVYNRLLKERIIFLGSEVTDQVANRICAQLLLLAAEDPDRDINLWINSPGGSV 80

Query: 87  TAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG 146
            +GMAIYDTMQFI   +ST  MG AASMG LLL AG KG R+ALP+ARI++HQPSGG  G
Sbjct: 81  YSGMAIYDTMQFIDNDVSTVAMGMAASMGQLLLCAGTKGKRYALPHARIMMHQPSGGMGG 140

Query: 147 QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
            ASDI   A+ ++  KR   E    + G++  ++E   DRD   +A EA D+G +DKV+ 
Sbjct: 141 TASDIAIQAEQMLYTKRMFQERVAFHTGQSQAQIEADSDRDRWFTAQEAMDYGFIDKVIT 200

Query: 207 SRIDIEEKS 215
               + E +
Sbjct: 201 GAAQVPEGA 209


>gi|225010439|ref|ZP_03700910.1| Endopeptidase Clp [Flavobacteria bacterium MS024-3C]
 gi|225005268|gb|EEG43219.1| Endopeptidase Clp [Flavobacteria bacterium MS024-3C]
          Length = 226

 Score =  235 bits (599), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 88/194 (45%), Positives = 134/194 (69%)

Query: 14  VFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQK 73
             +G+ P ++E+      + D++SRL+ +RI+F+   I D +A ++ AQLLFLE+ +  K
Sbjct: 30  YPVGMTPNIIEERQLNAIAMDVFSRLMMDRIIFLGTGINDQVANIVQAQLLFLESADAAK 89

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I +YINSPGG V AG+ IYDTMQFIKP ++T C G AASM ++LL AGEKG R  L ++
Sbjct: 90  DIQIYINSPGGSVYAGLGIYDTMQFIKPDVATICTGIAASMAAVLLCAGEKGKRSGLTHS 149

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           R+++HQP  G  GQASDIE  A++++KIK  L  I   + G+T+++V +  DRD+ M A 
Sbjct: 150 RVMIHQPLSGAQGQASDIEIAAKEVLKIKDELYTIISNHSGQTFDKVYQDSDRDYWMKAE 209

Query: 194 EACDWGVVDKVLMS 207
           +A  +G++D++L  
Sbjct: 210 QAKSYGMIDEILSR 223


>gi|203284513|ref|YP_002222253.1| ATP-dependent Clp protease proteolytic component [Borrelia duttonii
           Ly]
 gi|203288047|ref|YP_002223062.1| ATP-dependent Clp protease proteolytic component [Borrelia
           recurrentis A1]
 gi|201083956|gb|ACH93547.1| ATP-dependent Clp protease proteolytic component [Borrelia duttonii
           Ly]
 gi|201085267|gb|ACH94841.1| ATP-dependent Clp protease proteolytic component [Borrelia
           recurrentis A1]
          Length = 199

 Score =  235 bits (599), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 94/191 (49%), Positives = 137/191 (71%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVP VVE T   ER +DIYSRLL++RI+F++G+I D     + AQLLFLE+E+ +K+I 
Sbjct: 8   NLVPTVVEHTGNYERVFDIYSRLLRDRIIFLSGEINDLRGDTVIAQLLFLESEDSKKDIY 67

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG +TAG+AIYDTMQ+IKP + T C+GQAASM + LL+ G  G R +L  +RI+
Sbjct: 68  LYINSPGGSITAGLAIYDTMQYIKPDVRTICIGQAASMAAFLLAGGAVGKRESLSYSRIM 127

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQASDI   A +I+++KR + +I  +  G + E++   ++RD+ M+   A 
Sbjct: 128 IHQPWGGIGGQASDISIQANEIIRLKRLIIDIMSEKIGVSKEKLALDIERDYFMTPEGAL 187

Query: 197 DWGVVDKVLMS 207
           ++G++D +L+ 
Sbjct: 188 NYGIIDSILVR 198


>gi|325000575|ref|ZP_08121687.1| endopeptidase Clp [Pseudonocardia sp. P1]
          Length = 230

 Score =  235 bits (599), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 94/193 (48%), Positives = 136/193 (70%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T+ G +  + Y++L +ERI+F+  QI D  A    AQLL LE+ +P +EISL
Sbjct: 31  VLPSYVERTSYGVKESNPYNKLFEERIIFLGEQINDTSANDTMAQLLVLESLDPDREISL 90

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQFI+P I T C+GQAAS  ++LL AG  G R A+ NARIL+
Sbjct: 91  YINSPGGSFTSLMAIYDTMQFIRPDIQTVCLGQAASAAAVLLCAGTPGRRMAVENARILI 150

Query: 138 HQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+     GQASD+E  A +I +I++R+ E+  ++  +T E+V   +DRD I++A EA 
Sbjct: 151 HQPATEGVYGQASDLEIQATEISRIRKRMEEVIARHSNRTAEQVRDDIDRDKILTAEEAK 210

Query: 197 DWGVVDKVLMSRI 209
           ++G+VD+++ SR 
Sbjct: 211 EYGLVDEIVQSRK 223


>gi|116515217|ref|YP_802846.1| hypothetical protein BCc_293 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116257071|gb|ABJ90753.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease,
           heat shock protein F21.5 [Buchnera aphidicola str. Cc
           (Cinara cedri)]
          Length = 200

 Score =  235 bits (599), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 102/195 (52%), Positives = 153/195 (78%), Gaps = 1/195 (0%)

Query: 8   KKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           KK ++     L+P V+E+TN GERSYDI+S+LLKERI+F+TG I+D++A+++ +Q+LFLE
Sbjct: 5   KKKNQQKNNLLIPFVIEKTNHGERSYDIFSKLLKERIIFITGIIDDNIASIVISQILFLE 64

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           +EN +K+I +YINSPGG++T+G++IYDTMQF++P I+T C+GQA    ++LL +G KG R
Sbjct: 65  SENKKKDIFIYINSPGGIITSGLSIYDTMQFVQPKINTICIGQAVY-AAILLCSGNKGKR 123

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           F+LP+ARI+LHQP GGF GQASDI  HAQ+I KIK+ +N +   +  +  ++++K  +RD
Sbjct: 124 FSLPHARIMLHQPLGGFKGQASDIMIHAQEIKKIKKIINNLLSYHTKQPIKKIKKDTERD 183

Query: 188 HIMSASEACDWGVVD 202
           +  SA EA  +G++D
Sbjct: 184 YFFSAQEAIKYGLID 198


>gi|307708900|ref|ZP_07645360.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus mitis
           SK564]
 gi|322376945|ref|ZP_08051438.1| Clp protease [Streptococcus sp. M334]
 gi|307620236|gb|EFN99352.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus mitis
           SK564]
 gi|321282752|gb|EFX59759.1| Clp protease [Streptococcus sp. M334]
          Length = 196

 Score =  235 bits (599), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 93/192 (48%), Positives = 139/192 (72%), Gaps = 2/192 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K +  L +I  +N G++ E+V    +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRNTLEKILAENSGQSIEKVHADAERDNWMSAQET 180

Query: 196 CDWGVVDKVLMS 207
            ++G +D+++ +
Sbjct: 181 LEYGFIDEIMAN 192


>gi|319440931|ref|ZP_07990087.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           variabile DSM 44702]
          Length = 203

 Score =  235 bits (599), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 88/176 (50%), Positives = 125/176 (71%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           ++ RLL+ERI+F+  Q++D +A  +CAQ+L L AE+P+++ISLYINSPGG VTAGMAI+D
Sbjct: 27  VFERLLRERIIFLGTQVDDEIANKLCAQILLLSAEDPERDISLYINSPGGSVTAGMAIFD 86

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQF    ++T+ MG AASMG  LLSAG  G R+ALP+ARI++HQPS G  G ASDI   
Sbjct: 87  TMQFAPCDVATYSMGLAASMGQFLLSAGAPGKRYALPHARIMMHQPSAGVGGTASDIAIQ 146

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           A+   ++K+ +  +  ++ G++ E + K  DRD    A EA ++G+VD V+ S  D
Sbjct: 147 AEQFGEVKKEMAALIAEHTGQSVETIRKDSDRDRWFKAQEAKEYGLVDHVISSLKD 202


>gi|269219685|ref|ZP_06163539.1| Clp protease [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269210927|gb|EEZ77267.1| Clp protease [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 197

 Score =  235 bits (599), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 98/184 (53%), Positives = 132/184 (71%), Gaps = 1/184 (0%)

Query: 25  QTNR-GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           QT + G     +Y+RLLKERI+++  ++ +  A +ICAQ+L L AE+P+++I LYINSPG
Sbjct: 4   QTPQHGMLEESVYTRLLKERIIWLGEEVREDNANIICAQMLLLAAEDPERDIYLYINSPG 63

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           G VTAGMAIYDTMQFI+P + T  MG AASMG  LLSAG KG R+  P+AR+LLHQP GG
Sbjct: 64  GSVTAGMAIYDTMQFIQPDVVTVGMGMAASMGQFLLSAGAKGKRYITPHARVLLHQPLGG 123

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
             G A+DI  +A  I+++KR L EI  +  GKT E+V +  DRDH  +A EA ++G VD+
Sbjct: 124 AGGTATDIRINADLILQMKRELAEITAEATGKTPEQVIEDGDRDHWFNAQEALEYGFVDR 183

Query: 204 VLMS 207
           ++ S
Sbjct: 184 IVSS 187


>gi|218128447|ref|ZP_03457251.1| hypothetical protein BACEGG_00015 [Bacteroides eggerthii DSM 20697]
 gi|317475727|ref|ZP_07934986.1| Clp protease [Bacteroides eggerthii 1_2_48FAA]
 gi|217989338|gb|EEC55651.1| hypothetical protein BACEGG_00015 [Bacteroides eggerthii DSM 20697]
 gi|316908110|gb|EFV29805.1| Clp protease [Bacteroides eggerthii 1_2_48FAA]
          Length = 220

 Score =  235 bits (599), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 85/189 (44%), Positives = 130/189 (68%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  QI+D+ A  + AQLL+L++ +P K+IS+YI
Sbjct: 32  PYILEERQLNVTQLDVFSRLMMDRIIFLGTQIDDYTANTLQAQLLYLDSVDPGKDISIYI 91

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V AG+ IYDTMQFI   ++T C G AASM ++LL AG +G R AL ++R+++HQ
Sbjct: 92  NSPGGSVYAGLGIYDTMQFISSDVATICTGMAASMAAVLLVAGAEGKRSALTHSRVMIHQ 151

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I K+K+ L  I   +    +++V    DRD+ M+A EA ++G
Sbjct: 152 PMGGAQGQASDIEITAREIQKLKKELYTIIADHSHTPFDKVWADSDRDYWMTAQEAKEYG 211

Query: 200 VVDKVLMSR 208
           ++D+V   +
Sbjct: 212 MIDQVYTKK 220


>gi|117927946|ref|YP_872497.1| ATP-dependent Clp protease proteolytic subunit [Acidothermus
           cellulolyticus 11B]
 gi|117648409|gb|ABK52511.1| ATP-dependent Clp protease proteolytic subunit ClpP [Acidothermus
           cellulolyticus 11B]
          Length = 236

 Score =  235 bits (599), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 91/192 (47%), Positives = 142/192 (73%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP   E+T++G+R ++ Y++L +ERI+F+  QI+D  A  + AQLL LE+ +P ++I L
Sbjct: 33  IVPEFRERTSQGDRIHNPYTKLFEERIIFLGVQIDDISANDVMAQLLTLESMDPDRDIQL 92

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQFI+P + T CMGQAAS  ++LL+AG KG R ALPN+RIL+
Sbjct: 93  YINSPGGSFTALTAIYDTMQFIRPEVQTICMGQAASAAAVLLAAGTKGKRMALPNSRILI 152

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP     GQASD+E  A+++++++R L  +  K+ G++ E++ + ++RD I++A EA +
Sbjct: 153 HQPYSEAGGQASDLEIAAREVLRMRRLLEHLLAKHTGRSEEQIRQDIERDKILTAEEAVE 212

Query: 198 WGVVDKVLMSRI 209
           +G++D+V+ +R 
Sbjct: 213 YGIIDEVITTRK 224


>gi|288803882|ref|ZP_06409307.1| Clp protease [Prevotella melaninogenica D18]
 gi|288333647|gb|EFC72097.1| Clp protease [Prevotella melaninogenica D18]
          Length = 230

 Score =  235 bits (599), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 87/190 (45%), Positives = 135/190 (71%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ ERI+F+  Q++D+ A  I AQLL+L++ +P K+IS+YI
Sbjct: 32  PYILEERQLNVTQMDVFSRLMMERIIFLGTQVDDYSANTIQAQLLYLDSVDPGKDISIYI 91

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VTAG+ IYDTMQFI   ++T C G AASM ++LL AG++G R AL ++R+++HQ
Sbjct: 92  NSPGGSVTAGLGIYDTMQFISSDVATLCTGMAASMAAVLLVAGKEGKRSALKHSRVMIHQ 151

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I K K+ L  I  ++  + +++V    DR++ M++ EA ++G
Sbjct: 152 PLGGVQGQASDIEIEAREIQKFKKELYTIISEHSHQPFDKVWNDSDRNYWMTSEEAKEYG 211

Query: 200 VVDKVLMSRI 209
           ++D+VLM + 
Sbjct: 212 MIDEVLMRKP 221


>gi|262201986|ref|YP_003273194.1| endopeptidase Clp [Gordonia bronchialis DSM 43247]
 gi|262085333|gb|ACY21301.1| Endopeptidase Clp [Gordonia bronchialis DSM 43247]
          Length = 207

 Score =  235 bits (599), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 85/176 (48%), Positives = 121/176 (68%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           +  ++ RLL+ERI+F+  Q++D +A  +CAQ+L L AE+P K+I+LYINSPGG VTAGMA
Sbjct: 26  TDSVFERLLRERIIFLGTQVDDDIANRLCAQILLLAAEDPHKDINLYINSPGGSVTAGMA 85

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           I+DTMQ     ++T+ MG AASMG  LL+AG KG R ALP+ARI++HQPS G  G A+DI
Sbjct: 86  IFDTMQLATCDVATYAMGMAASMGQFLLAAGAKGKRHALPHARIMMHQPSAGIGGTAADI 145

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
              A+     K+ +N +  +  G+  E++E   DRD   +A EA ++G+VD V+  
Sbjct: 146 AIQAEQFAATKKEMNRLNAEFSGQPLEKIEADADRDKWFTAEEAKEYGLVDHVITR 201


>gi|306829178|ref|ZP_07462368.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus mitis
           ATCC 6249]
 gi|304428264|gb|EFM31354.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus mitis
           ATCC 6249]
          Length = 196

 Score =  235 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 93/192 (48%), Positives = 139/192 (72%), Gaps = 2/192 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K ++ L +I   N GK+ E++    +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRKTLEQILADNSGKSVEQIHADAERDYWMSAQET 180

Query: 196 CDWGVVDKVLMS 207
            ++G +D+++ +
Sbjct: 181 LEYGFIDEIMAN 192


>gi|261749127|ref|YP_003256812.1| ATP-dependent Clp protease proteolytic subunit 2 [Blattabacterium
           sp. (Periplaneta americana) str. BPLAN]
 gi|261497219|gb|ACX83669.1| ATP-dependent Clp protease proteolytic subunit 2 [Blattabacterium
           sp. (Periplaneta americana) str. BPLAN]
          Length = 234

 Score =  235 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 87/199 (43%), Positives = 135/199 (67%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           + P +VE+        D++SRL+ +R++F+   IED +A ++ AQLLFL++ +  K+I +
Sbjct: 33  MTPYIVEERKLNVAQMDVFSRLMMDRVIFLGTPIEDQVANIVQAQLLFLQSVDSLKDIQI 92

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+ IYDTMQ ++P ++T C G AASM ++LL AG K  R  L ++R+++
Sbjct: 93  YINSPGGDVHAGLGIYDTMQIVEPDVATICTGMAASMAAVLLCAGVKNKRSGLKHSRVMI 152

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE   ++I+K+KR L EI   + G   E++EK  DRD+ M++ EA +
Sbjct: 153 HQPMGGTHGQASDIEITVREILKLKRELYEIIAIHSGSPIEKIEKDSDRDYWMTSEEAKE 212

Query: 198 WGVVDKVLMSRIDIEEKSK 216
           +G++D+VL  ++  +   K
Sbjct: 213 YGMIDEVLKEKVSKKTFEK 231


>gi|291439660|ref|ZP_06579050.1| ATP-dependent Clp protease proteolytic subunit 1 [Streptomyces
           ghanaensis ATCC 14672]
 gi|291342555|gb|EFE69511.1| ATP-dependent Clp protease proteolytic subunit 1 [Streptomyces
           ghanaensis ATCC 14672]
          Length = 219

 Score =  235 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 97/206 (47%), Positives = 134/206 (65%), Gaps = 2/206 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYD-IYSRLLKERIVFVTGQIEDHMATLI 59
           M   G   + +      L+P    + + G    D +Y+RLL ERI+F+   ++D +A  I
Sbjct: 1   MRRPGAVVRRAGGYVTNLMPSAAGEPSIGGGLGDQVYNRLLNERIIFLGQPVDDDIANKI 60

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
            AQLL L ++ P K+I LYINSPGG +TAGMAIYDTMQ+IK  + T  MG AASMG  LL
Sbjct: 61  TAQLLLLASD-PDKDIYLYINSPGGSITAGMAIYDTMQYIKNDVVTIAMGLAASMGQFLL 119

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
           SAG  G RFALPNA IL+HQPS G +G ASDI+ HA+ ++  KRR+ E+  ++ G+T E+
Sbjct: 120 SAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKRRMAELTSQHTGQTVEQ 179

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVL 205
           + +  DRD    A EA ++G++D V+
Sbjct: 180 ITRDSDRDRWFDAFEAKEYGLIDDVI 205


>gi|293365057|ref|ZP_06611774.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           oralis ATCC 35037]
 gi|307702233|ref|ZP_07639193.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP
           [Streptococcus oralis ATCC 35037]
 gi|315612826|ref|ZP_07887737.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           sanguinis ATCC 49296]
 gi|331266748|ref|YP_004326378.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           oralis Uo5]
 gi|291316507|gb|EFE56943.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           oralis ATCC 35037]
 gi|307624246|gb|EFO03223.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP
           [Streptococcus oralis ATCC 35037]
 gi|315314936|gb|EFU62977.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           sanguinis ATCC 49296]
 gi|326683420|emb|CBZ01038.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           oralis Uo5]
          Length = 196

 Score =  234 bits (598), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 93/192 (48%), Positives = 139/192 (72%), Gaps = 2/192 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K ++ L +I   N GK+ E++    +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRKTLEQILADNSGKSVEQIHADAERDYWMSAQET 180

Query: 196 CDWGVVDKVLMS 207
            ++G +D+++ +
Sbjct: 181 LEYGFIDEIMAN 192


>gi|325963649|ref|YP_004241555.1| ATP-dependent Clp protease proteolytic subunit ClpP [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323469736|gb|ADX73421.1| ATP-dependent Clp protease proteolytic subunit ClpP [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 207

 Score =  234 bits (598), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 93/170 (54%), Positives = 121/170 (71%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IY+RLLKERI+++  ++ D  A  IC+QLL L AENP K+I LYINSPGG VTAGMAIYD
Sbjct: 13  IYNRLLKERIIWLGSEVRDDNANAICSQLLLLSAENPDKDIYLYINSPGGSVTAGMAIYD 72

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQFI   + T   G AASMG  LLS+G KG R+A PNAR+L+HQPSGG  G ASDI+  
Sbjct: 73  TMQFIPNDVVTVATGLAASMGQFLLSSGTKGKRYATPNARVLMHQPSGGIGGTASDIKIQ 132

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           A+ I+ +K+ + E+  +  G+T E + K  DRD   +A+EA ++G  DK+
Sbjct: 133 AELILHMKKVMAELTAEQTGQTVETILKDNDRDKWFTATEALEYGFFDKI 182


>gi|325268720|ref|ZP_08135349.1| ATP-dependent Clp protease, protease subunit [Prevotella
           multiformis DSM 16608]
 gi|324988964|gb|EGC20918.1| ATP-dependent Clp protease, protease subunit [Prevotella
           multiformis DSM 16608]
          Length = 253

 Score =  234 bits (598), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 86/190 (45%), Positives = 133/190 (70%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  QI+D+ A  + AQLL+L++ +P K+IS+YI
Sbjct: 55  PYILEERQLNVTQMDVFSRLMMDRIIFLGTQIDDYTANTLQAQLLYLDSVDPGKDISIYI 114

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VTAG+ IYDTMQFI   ++T C G AASM ++LL AG++G R AL ++R+++HQ
Sbjct: 115 NSPGGSVTAGLGIYDTMQFISSDVATICTGMAASMAAVLLVAGQEGKRSALTHSRVMIHQ 174

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I K K+ L  I   +  + +++V    DR++ M+A EA ++G
Sbjct: 175 PLGGVQGQASDIEIEAREIQKFKKELYTIISNHSHQPFDKVWNDSDRNYWMTAEEAREYG 234

Query: 200 VVDKVLMSRI 209
           ++D+VL  + 
Sbjct: 235 MIDEVLTRKP 244


>gi|224025975|ref|ZP_03644341.1| hypothetical protein BACCOPRO_02726 [Bacteroides coprophilus DSM
           18228]
 gi|224019211|gb|EEF77209.1| hypothetical protein BACCOPRO_02726 [Bacteroides coprophilus DSM
           18228]
          Length = 224

 Score =  234 bits (598), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 85/190 (44%), Positives = 131/190 (68%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  QI+D+ A  + AQLL+L++ +  K+IS+YI
Sbjct: 33  PYILEERQLNVTQLDVFSRLMMDRIIFLGTQIDDYTANTLQAQLLYLDSVDAGKDISIYI 92

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V AG+ IYDTMQFI   ++T C G AASM ++LL AG++G R AL ++R+++HQ
Sbjct: 93  NSPGGSVYAGLGIYDTMQFISSDVATICTGMAASMAAVLLVAGKEGKRSALTHSRVMIHQ 152

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I K+K+ L  I   +    +++V    DRD+ M+A EA ++G
Sbjct: 153 PMGGAQGQASDIEITAREIQKLKKELYTIIADHSHTDFDKVWADSDRDYWMTAQEAKEYG 212

Query: 200 VVDKVLMSRI 209
           ++D+VL  + 
Sbjct: 213 MIDEVLSRKP 222


>gi|326330020|ref|ZP_08196334.1| Clp protease [Nocardioidaceae bacterium Broad-1]
 gi|325952228|gb|EGD44254.1| Clp protease [Nocardioidaceae bacterium Broad-1]
          Length = 201

 Score =  234 bits (598), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 82/192 (42%), Positives = 131/192 (68%), Gaps = 1/192 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVE+T RGER+ D+YSRLL +RIV++   I+D +A ++ AQL+ LE++ P  +I LY
Sbjct: 6   IPSVVEKTPRGERALDVYSRLLSDRIVYLGTPIDDGVANVVIAQLIHLESDAPDTQIELY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           +NSPGG  TA   IYDTMQF++ P++T C+GQAA   ++LL+AG+ G R  LP+AR++L 
Sbjct: 66  LNSPGGDPTAMFGIYDTMQFLRSPVATTCVGQAAGSAAVLLAAGDPGRRTVLPHARVVLQ 125

Query: 139 QPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP      G  +D++  A++I +++  ++ +  ++ G++ EE+    +RD ++ A EA  
Sbjct: 126 QPGQDGQRGDVTDLQVAAKEIGRLRAEMDTLLARHTGRSAEEIHADTERDLVLGAEEAVA 185

Query: 198 WGVVDKVLMSRI 209
           +G+ D VL SR 
Sbjct: 186 YGLADAVLESRK 197


>gi|330469650|ref|YP_004407393.1| endopeptidase clp [Verrucosispora maris AB-18-032]
 gi|328812621|gb|AEB46793.1| endopeptidase clp [Verrucosispora maris AB-18-032]
          Length = 212

 Score =  234 bits (598), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 93/187 (49%), Positives = 126/187 (67%)

Query: 29  GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTA 88
           G     +Y+RLLKERI+F+  ++ D +A  ICAQLL L AE+P ++I L+INSPGG V +
Sbjct: 22  GNLDDSVYNRLLKERIIFLGSEVNDQVANRICAQLLLLAAEDPDRDIFLWINSPGGSVYS 81

Query: 89  GMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQA 148
           GMAIYDTMQ+I   +ST  MG AASMG LLL AG KG R+ALP+ARI++HQPSGG  G A
Sbjct: 82  GMAIYDTMQYIDNDVSTVAMGMAASMGQLLLCAGTKGKRYALPHARIMMHQPSGGLGGTA 141

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           SDI   A+ ++  KR   E    + G++  ++E   DRD   +A EA D+G +DKV++  
Sbjct: 142 SDIAIQAEQMLYTKRMFQERVAHHTGQSQAQIEADSDRDRWFTAQEAMDYGFIDKVIIGA 201

Query: 209 IDIEEKS 215
             + E +
Sbjct: 202 AQVPEGA 208


>gi|302549127|ref|ZP_07301469.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           viridochromogenes DSM 40736]
 gi|302466745|gb|EFL29838.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           viridochromogenes DSM 40736]
          Length = 200

 Score =  234 bits (598), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 90/192 (46%), Positives = 134/192 (69%), Gaps = 1/192 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVE+T  GERS D++SRLL ERI+F+  +I+D +A ++ AQLL LE+  P+ EIS+Y
Sbjct: 6   IPYVVERTAHGERSSDVFSRLLSERIIFLGTEIDDGVANVVIAQLLHLESSAPESEISVY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  T+ MAIYDTM ++K PIST C+GQAAS  ++LL+ G+ G RF L +AR+LL 
Sbjct: 66  INSPGGSFTSLMAIYDTMSYVKAPISTCCVGQAASTAAVLLAGGDPGRRFVLEHARVLLG 125

Query: 139 QP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP +GG  G  SD+   A+++V+I+ ++ E+  ++       +   +DRD + +A EA  
Sbjct: 126 QPAAGGSRGAISDLALQAKEMVRIRSQVEEVLARHTHHDLATLRADMDRDKVFTAEEAVA 185

Query: 198 WGVVDKVLMSRI 209
           +G+ D+VL  R+
Sbjct: 186 YGLADEVLSRRL 197


>gi|322374649|ref|ZP_08049163.1| Clp protease [Streptococcus sp. C300]
 gi|321280149|gb|EFX57188.1| Clp protease [Streptococcus sp. C300]
          Length = 196

 Score =  234 bits (598), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 93/192 (48%), Positives = 139/192 (72%), Gaps = 2/192 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K ++ L +I   N GK+ E++    +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRKTLEKILADNSGKSVEQIHADAERDYWMSAQET 180

Query: 196 CDWGVVDKVLMS 207
            ++G +D+++ +
Sbjct: 181 LEYGFIDEIMAN 192


>gi|224007247|ref|XP_002292583.1| catalytic subunit of clp protease [Thalassiosira pseudonana
           CCMP1335]
 gi|220971445|gb|EED89779.1| catalytic subunit of clp protease [Thalassiosira pseudonana
           CCMP1335]
          Length = 201

 Score =  234 bits (598), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 90/191 (47%), Positives = 127/191 (66%), Gaps = 2/191 (1%)

Query: 19  VPMVVEQTNR--GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +     G    DIY+RL +ERI+F+  +I+D +A  I   +L+L+ E+  K I 
Sbjct: 5   VPKVAYRVPGSSGGEWVDIYNRLYRERIIFLGSEIDDELANQIIGVMLYLDEEDSTKPIY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG V +G+AI+D MQ IK  + T  +G AASM S +LSAG KG R ALP++RI+
Sbjct: 65  LYINSPGGSVISGLAIFDAMQLIKSEVITINLGLAASMASFILSAGSKGKRLALPSSRIM 124

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA DI+  A  I++I+  L ++Y    G+T E++ K LDRD+ MSA EA 
Sbjct: 125 IHQPMGGAQGQAQDIKVEAAQIMRIRDNLVKMYSMFTGQTTEQITKDLDRDNFMSAQEAL 184

Query: 197 DWGVVDKVLMS 207
           ++G++D+VL  
Sbjct: 185 EYGLIDRVLER 195


>gi|282860204|ref|ZP_06269278.1| Clp protease [Prevotella bivia JCVIHMP010]
 gi|282587025|gb|EFB92256.1| Clp protease [Prevotella bivia JCVIHMP010]
          Length = 221

 Score =  234 bits (598), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 90/199 (45%), Positives = 139/199 (69%), Gaps = 2/199 (1%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
           ++D +L   P ++E+        D++SRL+ +RI+F+  QI+D+ A  + AQLL+L++ +
Sbjct: 25  TQDQYLN--PYILEERQLNVTQMDVFSRLMMDRIIFLGTQIDDYTANTLQAQLLYLDSVD 82

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
             K+IS+YINSPGG VTAG+ IYDTMQFI   ++T C G AASMG++LL AG +G R AL
Sbjct: 83  SGKDISIYINSPGGSVTAGLGIYDTMQFISSDVATICTGMAASMGAVLLVAGAEGKRSAL 142

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           P++R+++HQP GG  GQASDIE  A++I K K+ L  I   +  +++E+V    DR++ M
Sbjct: 143 PHSRVMIHQPLGGVQGQASDIEIEAKEIQKFKKELYTIISNHSHQSFEKVWNDSDRNYWM 202

Query: 191 SASEACDWGVVDKVLMSRI 209
           +A EA  +G++D+VL+ + 
Sbjct: 203 TADEAKAYGMIDEVLIRKK 221


>gi|326382827|ref|ZP_08204517.1| ATP-dependent Clp protease proteolytic subunit [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326198417|gb|EGD55601.1| ATP-dependent Clp protease proteolytic subunit [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 226

 Score =  234 bits (598), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 86/195 (44%), Positives = 134/195 (68%), Gaps = 2/195 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +E T  G+R YD Y++L +ERIVFV   I+  +A  + AQLL LE+++P ++I++
Sbjct: 28  ILPSFIENTPNGQRQYDPYAKLFEERIVFVGTPIDQTVANDVMAQLLVLESQDPDRDITM 87

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V   +AIYDTMQ++   + T C+G+AAS  ++LL+ G  G R ALPNA +L+
Sbjct: 88  YINSPGGSVPDMLAIYDTMQYVHCDVMTVCLGEAASAAAILLAGGTPGKRAALPNATVLI 147

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP   G + GQ SD+E  A +I +I++RL+EI   + G+  E++ K  DRD+I++A +A
Sbjct: 148 HQPRTGGAYQGQVSDLEIQAAEIERIRKRLDEILASHTGQDPEKIRKDTDRDNILTADQA 207

Query: 196 CDWGVVDKVLMSRID 210
            ++G++D+V   R  
Sbjct: 208 KEYGIIDEVFDYRKK 222


>gi|320534808|ref|ZP_08035227.1| Clp protease [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320132987|gb|EFW25516.1| Clp protease [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 212

 Score =  234 bits (598), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 94/184 (51%), Positives = 130/184 (70%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           +  IY+RLLKERI+++  ++ D  A  ICAQ+L L AE+P+++I LYINSPGG VTAGMA
Sbjct: 26  TDSIYNRLLKERIIWLGSEVRDDNANAICAQMLLLAAEDPERDIYLYINSPGGSVTAGMA 85

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           I DTM++++P ++T   G AASMG  LLSAG KG R+  P+AR+L+HQPSGG  G A+DI
Sbjct: 86  ILDTMEYVQPDVATVATGLAASMGQHLLSAGAKGKRYLTPHARVLMHQPSGGAGGSATDI 145

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
             +A  I+K+K+ L EI   N G T EE+    DRDH  SA EA ++G VD ++ S  +I
Sbjct: 146 RINADLIIKMKQELAEITAANTGHTVEEIIADSDRDHWFSAQEALEYGFVDHIVRSSREI 205

Query: 212 EEKS 215
            +++
Sbjct: 206 GKQN 209


>gi|29827688|ref|NP_822322.1| ATP-dependent Clp protease proteolytic subunit 2 [Streptomyces
           avermitilis MA-4680]
 gi|67460535|sp|Q82NZ3|CLPP2_STRAW RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|29604788|dbj|BAC68857.1| putative ATP-dependent Clp protease proteolytic subunit 2
           [Streptomyces avermitilis MA-4680]
          Length = 200

 Score =  234 bits (598), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 92/194 (47%), Positives = 139/194 (71%), Gaps = 1/194 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVE+T +GERSYD++SRLL ERI+F+  +I+D +A ++ AQLL LE+ NP+ EI++Y
Sbjct: 6   IPNVVERTPQGERSYDVFSRLLSERIIFLGTEIDDGVANVVIAQLLHLESANPEHEIAIY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  T+ MAIYDTM F++ PISTFC+GQAAS  ++LL+ G+ G RF L +AR+LL 
Sbjct: 66  INSPGGSFTSLMAIYDTMTFVQAPISTFCVGQAASTAAVLLAGGDPGRRFVLEHARVLLG 125

Query: 139 QP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP SGG  G  SD+   A+++++I+ ++ E+  ++       +   +DRD + +A EA  
Sbjct: 126 QPASGGRQGTVSDLSLQAKEMIRIRSQVEEVLSRHTRHDIATLRADMDRDKVFTAQEAVA 185

Query: 198 WGVVDKVLMSRIDI 211
           +G+ D+VL  R+ +
Sbjct: 186 YGLADEVLSRRLAV 199


>gi|161598446|ref|YP_117542.2| ATP-dependent Clp protease proteolytic subunit [Nocardia farcinica
           IFM 10152]
          Length = 195

 Score =  234 bits (598), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 93/176 (52%), Positives = 122/176 (69%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           S  +Y RLL+ERI+F+  Q++D +A  +CAQ+L L AE+P ++ISLYINSPGG VTAGMA
Sbjct: 11  SDSVYERLLRERIIFLGTQVDDDIANKLCAQILLLSAEDPTRDISLYINSPGGSVTAGMA 70

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYDTMQF +  I T  MG AASMG  LL+AG KG R+ALP+ARI++HQPS G  G A+DI
Sbjct: 71  IYDTMQFAECDIRTVGMGLAASMGQFLLTAGTKGKRYALPHARIMMHQPSAGIGGSAADI 130

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
              A+     KR LNE+   + GK+ E+V    DRD   +A EA ++G +D V+  
Sbjct: 131 AIMAEQFAHTKRELNELQALHTGKSVEQVTADADRDRWFTAQEALEYGFIDHVISH 186


>gi|329962626|ref|ZP_08300574.1| endopeptidase Clp [Bacteroides fluxus YIT 12057]
 gi|328529657|gb|EGF56555.1| endopeptidase Clp [Bacteroides fluxus YIT 12057]
          Length = 220

 Score =  234 bits (597), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 87/189 (46%), Positives = 132/189 (69%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  QI+D+ A  + AQLL+L++ +P K+IS+YI
Sbjct: 32  PYILEERQLNVTQLDVFSRLMMDRIIFLGTQIDDYTANTLQAQLLYLDSVDPGKDISIYI 91

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V AG+ IYDTMQFI   ++T C G AASM ++LL AG +G R AL ++R+++HQ
Sbjct: 92  NSPGGSVYAGLGIYDTMQFISSDVATICTGMAASMAAVLLVAGAEGKRSALTHSRVMIHQ 151

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I K+K+ L  I   +    +++V    DRD+ M+A EA ++G
Sbjct: 152 PMGGAQGQASDIEITAREIQKLKKELYTIIANHSHTDFDKVWADSDRDYWMTAQEAKEYG 211

Query: 200 VVDKVLMSR 208
           +VD+VL+ +
Sbjct: 212 MVDEVLIKK 220


>gi|302560650|ref|ZP_07312992.1| Clp protease [Streptomyces griseoflavus Tu4000]
 gi|302478268|gb|EFL41361.1| Clp protease [Streptomyces griseoflavus Tu4000]
          Length = 219

 Score =  234 bits (597), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 97/206 (47%), Positives = 134/206 (65%), Gaps = 2/206 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYD-IYSRLLKERIVFVTGQIEDHMATLI 59
           M   G   + +      L+P    + + G    D +Y+RLL ERI+F+   ++D +A  I
Sbjct: 1   MRRPGAVVRRAGGYVTNLMPSAAGEPSIGGGLGDQVYNRLLGERIIFLGQPVDDDIANKI 60

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
            AQLL L A+ P K+I LYINSPGG +TAGMAIYDTMQFIK  + T  MG AASMG  LL
Sbjct: 61  TAQLLLLAAD-PDKDIYLYINSPGGSITAGMAIYDTMQFIKNDVVTIAMGLAASMGQFLL 119

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
           SAG  G RFALPNA IL+HQPS G +G ASDI+ HA+ ++  K+R+ E+  ++ G++ E+
Sbjct: 120 SAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSQHTGQSVEQ 179

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVL 205
           + +  DRD    A EA ++G++D V+
Sbjct: 180 ITRDSDRDRWFDAFEAKEYGLIDDVI 205


>gi|294672820|ref|YP_003573436.1| ATP-dependent Clp protease proteolytic subunit ClpP [Prevotella
           ruminicola 23]
 gi|294471657|gb|ADE81046.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Prevotella
           ruminicola 23]
          Length = 192

 Score =  234 bits (597), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 90/192 (46%), Positives = 136/192 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           + P ++E+        D++SRL+ +RI+F+  QI+D+ A  + AQLLFL++ +P K+IS+
Sbjct: 1   MNPYILEERQLNVTQMDVFSRLMMDRIIFLGTQIDDYTANTLQAQLLFLDSTDPGKDISI 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG+ IYDTMQFI   ++T C G AASMG++LL AG +G R ALP++R+++
Sbjct: 61  YINSPGGSVTAGLGIYDTMQFITSDVATICTGMAASMGAVLLVAGAEGKRSALPHSRVMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  GQASDIE  A++I+K K+ L  I  ++    Y++V    DR++ M+A EA  
Sbjct: 121 HQPLGGVQGQASDIEIEAKEILKFKKELYTIISEHSHTPYDKVYADSDRNYWMTAEEAKA 180

Query: 198 WGVVDKVLMSRI 209
           +G++D+VL+ + 
Sbjct: 181 YGMIDEVLIRKK 192


>gi|295838900|ref|ZP_06825833.1| Clp protease [Streptomyces sp. SPB74]
 gi|302519066|ref|ZP_07271408.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sp. SPB78]
 gi|197695452|gb|EDY42385.1| Clp protease [Streptomyces sp. SPB74]
 gi|302427961|gb|EFK99776.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sp. SPB78]
          Length = 215

 Score =  234 bits (597), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 92/201 (45%), Positives = 129/201 (64%), Gaps = 2/201 (0%)

Query: 7   AKKDSEDVFLGLVPMVV-EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF 65
           + + +      L+P    E  + G     +YSRLL ERI+F+  Q++D +A  I AQ+L 
Sbjct: 3   SSRRAGGYVTNLMPSAAGEAFSGGGLGDQVYSRLLGERIIFLGQQVDDDIANKITAQMLL 62

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A+ P K+I LYINSPGG VTAGMAIYDTMQ+I   + T  MG AASMG  LL+ G  G
Sbjct: 63  LAAD-PSKDIYLYINSPGGSVTAGMAIYDTMQYIPNDVITIGMGMAASMGQFLLTGGTPG 121

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
            RFALPN  IL+HQ S G  G ASDI+  A+ +++ K R+ EI  ++ G+T E++ +  D
Sbjct: 122 KRFALPNTDILMHQGSAGIGGTASDIKIQAEYLLRTKNRMAEITARHSGQTIEKIIRDGD 181

Query: 186 RDHIMSASEACDWGVVDKVLM 206
           RD   +A EA D+G++D+++ 
Sbjct: 182 RDRWFTAEEAKDYGLIDEIIT 202


>gi|329934560|ref|ZP_08284601.1| ATP dependent Clp protease proteolytic subunit 1 [Streptomyces
           griseoaurantiacus M045]
 gi|329305382|gb|EGG49238.1| ATP dependent Clp protease proteolytic subunit 1 [Streptomyces
           griseoaurantiacus M045]
          Length = 206

 Score =  234 bits (597), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 96/197 (48%), Positives = 132/197 (67%), Gaps = 2/197 (1%)

Query: 17  GLVPMVVEQTNRGERSYD-IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
            L+P    + + G    D +Y+RLL ERI+F+   ++D +A  I AQLL L A+ P+K+I
Sbjct: 3   NLMPSAAGEPSIGGGLGDQVYNRLLGERIIFLGQPVDDDIANKITAQLLLLAAD-PEKDI 61

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGG +TAGMAIYDTMQFIK  + T  MG AASMG  LLSAG  G RFALPNA I
Sbjct: 62  NLYINSPGGSITAGMAIYDTMQFIKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEI 121

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQPS G +G ASDI+ HA+ ++  K+R+ E+   + G+T E++ +  DRD    A EA
Sbjct: 122 LIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSHHTGQTVEQITRDSDRDRWFDAYEA 181

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G++D V+     + 
Sbjct: 182 KEYGLIDDVITHAASLP 198


>gi|302532652|ref|ZP_07284994.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sp. C]
 gi|302441547|gb|EFL13363.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sp. C]
          Length = 200

 Score =  234 bits (597), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 92/191 (48%), Positives = 138/191 (72%), Gaps = 1/191 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP V+E+T +GERSYD++SRLL ERI+F+  +I+D +A ++ AQLL LE+ NP++EIS+Y
Sbjct: 6   VPYVIERTTQGERSYDVFSRLLNERIIFLGTEIDDGVANVVIAQLLHLESANPEQEISIY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           +NSPGG  T+ MAIYDTM F++ PISTFC+GQAAS  ++LL+ G+ G RF L +AR+LL 
Sbjct: 66  LNSPGGSFTSLMAIYDTMTFVQAPISTFCVGQAASTAAVLLAGGDPGRRFVLRHARVLLG 125

Query: 139 QP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP SGG  G  SD+   A+++V+I+ ++ E+  ++       +   +DR+ + +A EA  
Sbjct: 126 QPASGGRQGTVSDLSLAAKEMVRIRSQVEEVLSRHTHHDAATLRADMDREKVFTAEEAVA 185

Query: 198 WGVVDKVLMSR 208
           +G+ D+VL  R
Sbjct: 186 YGLADEVLSRR 196


>gi|67460459|sp|Q5Z063|CLPP2_NOCFA RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|54014808|dbj|BAD56178.1| putative Clp protease proteolytic subunit [Nocardia farcinica IFM
           10152]
          Length = 203

 Score =  234 bits (597), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 93/176 (52%), Positives = 122/176 (69%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           S  +Y RLL+ERI+F+  Q++D +A  +CAQ+L L AE+P ++ISLYINSPGG VTAGMA
Sbjct: 19  SDSVYERLLRERIIFLGTQVDDDIANKLCAQILLLSAEDPTRDISLYINSPGGSVTAGMA 78

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYDTMQF +  I T  MG AASMG  LL+AG KG R+ALP+ARI++HQPS G  G A+DI
Sbjct: 79  IYDTMQFAECDIRTVGMGLAASMGQFLLTAGTKGKRYALPHARIMMHQPSAGIGGSAADI 138

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
              A+     KR LNE+   + GK+ E+V    DRD   +A EA ++G +D V+  
Sbjct: 139 AIMAEQFAHTKRELNELQALHTGKSVEQVTADADRDRWFTAQEALEYGFIDHVISH 194


>gi|325855169|ref|ZP_08171792.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Prevotella denticola CRIS 18C-A]
 gi|327312568|ref|YP_004328005.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Prevotella denticola F0289]
 gi|325483906|gb|EGC86850.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Prevotella denticola CRIS 18C-A]
 gi|326946024|gb|AEA21909.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Prevotella denticola F0289]
          Length = 227

 Score =  234 bits (597), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 85/190 (44%), Positives = 133/190 (70%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  QI+D+ A  + AQLL+L++ +P K+IS+YI
Sbjct: 32  PYILEERQLNVTQMDVFSRLMMDRIIFLGTQIDDYTANTLQAQLLYLDSVDPGKDISIYI 91

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VTAG+ IYDTMQFI   ++T C G AASM ++LL AG++G R AL ++R+++HQ
Sbjct: 92  NSPGGSVTAGLGIYDTMQFISSDVATICTGMAASMAAVLLVAGQEGKRSALTHSRVMIHQ 151

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I K K+ L  I   +  + +++V    DR++ M++ EA ++G
Sbjct: 152 PLGGVQGQASDIEIEAREIQKFKKELYTIISNHSHQPFDKVWNDSDRNYWMTSEEAREYG 211

Query: 200 VVDKVLMSRI 209
           ++D+VL  + 
Sbjct: 212 MIDEVLTRKP 221


>gi|270292328|ref|ZP_06198539.1| ATP-dependent Clp protease, proteolytic subunit [Streptococcus sp.
           M143]
 gi|270278307|gb|EFA24153.1| ATP-dependent Clp protease, proteolytic subunit [Streptococcus sp.
           M143]
          Length = 196

 Score =  234 bits (597), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 93/192 (48%), Positives = 139/192 (72%), Gaps = 2/192 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K ++ L +I   N GK+ E++    +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRKTLEQILATNSGKSVEQIHADAERDYWMSAQET 180

Query: 196 CDWGVVDKVLMS 207
            ++G +D+++ +
Sbjct: 181 LEYGFIDEIMAN 192


>gi|320102926|ref|YP_004178517.1| ATP-dependent Clp protease proteolytic subunit ClpP [Isosphaera
           pallida ATCC 43644]
 gi|319750208|gb|ADV61968.1| ATP-dependent Clp protease proteolytic subunit ClpP [Isosphaera
           pallida ATCC 43644]
          Length = 209

 Score =  234 bits (597), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 85/199 (42%), Positives = 140/199 (70%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + +VP+V+E+  R ER+ DIYSRLL++RI+ ++  ++D  A LI AQLL L  ++ + EI
Sbjct: 1   MPMVPIVIERGGREERAMDIYSRLLQDRIIMLSSILDDVTANLIVAQLLVLAHQDAKAEI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLY+NSPGG +T  MA+YDTMQFI  P++T+C+G AAS  ++LL+ G KG R ALP+++I
Sbjct: 61  SLYLNSPGGSLTGTMAVYDTMQFIGCPVATYCIGMAASGAAILLAGGTKGRRHALPHSKI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +LHQP G   GQ SDI   A ++++ K  + ++  +  G++ +++E  + RD  +SA EA
Sbjct: 121 MLHQPYGHVGGQVSDISIQAAEVLRNKAVVEKVLARRTGRSEKQIESEIKRDRYLSAPEA 180

Query: 196 CDWGVVDKVLMSRIDIEEK 214
            ++G++D ++  + +I++ 
Sbjct: 181 LEFGLIDHIVEDKSEIKDA 199


>gi|322387412|ref|ZP_08061022.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           infantis ATCC 700779]
 gi|321141941|gb|EFX37436.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           infantis ATCC 700779]
          Length = 196

 Score =  234 bits (597), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 95/192 (49%), Positives = 140/192 (72%), Gaps = 2/192 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K ++ L +I   N GK+ E++ K  +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRKTLEQILADNSGKSVEQIHKDAERDYWMSAQET 180

Query: 196 CDWGVVDKVLMS 207
            D+G +D+++ +
Sbjct: 181 LDYGFIDEIMAN 192


>gi|300788577|ref|YP_003768868.1| protease subunit of ATP-dependent Clp protease [Amycolatopsis
           mediterranei U32]
 gi|299798091|gb|ADJ48466.1| protease subunit of ATP-dependent Clp protease [Amycolatopsis
           mediterranei U32]
          Length = 201

 Score =  234 bits (597), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 92/188 (48%), Positives = 119/188 (63%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
            P     T     +  ++ RLL+ERIV +  ++ D +A  I AQLL L+A++ + +I  Y
Sbjct: 5   TPEARTGTAGLTLTDSVFERLLQERIVVLGSEVNDEIANRITAQLLLLDADDAESDIRFY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG AIYDTMQ I+P ++T+ MG AASMG  LLS+G  G R+ALP+ARIL+H
Sbjct: 65  INSPGGSVTAGFAIYDTMQLIRPDVATYAMGMAASMGQFLLSSGTPGKRYALPHARILMH 124

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPS G  G ASDI   A    K KR L +I     G+T E++ K  DRD   +A EA D+
Sbjct: 125 QPSAGVGGTASDIAIQADLFNKWKRELAQITADQTGQTVEQIIKDGDRDRWFTAQEAKDY 184

Query: 199 GVVDKVLM 206
           G VD VL 
Sbjct: 185 GFVDHVLT 192


>gi|167462695|ref|ZP_02327784.1| ATP-dependent Clp protease proteolytic subunit [Paenibacillus
           larvae subsp. larvae BRL-230010]
          Length = 165

 Score =  234 bits (597), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 91/164 (55%), Positives = 125/164 (76%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPI 103
           +VF+  Q+ D +A  I AQLLFL A++P K+ISLYINSPGG +TAGMAIYDTMQ+IKP +
Sbjct: 1   MVFLGTQVNDAVANSIIAQLLFLAAQDPDKDISLYINSPGGSITAGMAIYDTMQYIKPDV 60

Query: 104 STFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKR 163
           ST C+G AASMG+ LL+AG  G R+ALPN+ +++HQP GG  GQA+DIE  A+ I+K++ 
Sbjct: 61  STICVGMAASMGAFLLNAGAVGKRYALPNSEVMIHQPLGGAEGQATDIEIRAKRIIKMRE 120

Query: 164 RLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
            LN I  +  G+  E++E+  DRD+ MSASEA ++G++DKV+  
Sbjct: 121 NLNRILSERTGQPLEKIERDTDRDYFMSASEAKEYGLIDKVIER 164


>gi|307706962|ref|ZP_07643761.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           mitis SK321]
 gi|307617676|gb|EFN96844.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           mitis SK321]
          Length = 196

 Score =  234 bits (597), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 93/192 (48%), Positives = 139/192 (72%), Gaps = 2/192 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K +  L +I  +N G++ E+V    +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRNILEKILAENSGQSIEKVHADAERDNWMSAQET 180

Query: 196 CDWGVVDKVLMS 207
            ++G +D+++ +
Sbjct: 181 LEYGFIDEIMAN 192


>gi|281425294|ref|ZP_06256207.1| hypothetical protein HMPREF0971_02266 [Prevotella oris F0302]
 gi|299141492|ref|ZP_07034628.1| Clp protease [Prevotella oris C735]
 gi|281400587|gb|EFB31418.1| Clp protease [Prevotella oris F0302]
 gi|298576828|gb|EFI48698.1| Clp protease [Prevotella oris C735]
          Length = 221

 Score =  233 bits (596), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 84/190 (44%), Positives = 134/190 (70%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  +I+D+ A  + AQLL+L++ +  K+IS+YI
Sbjct: 32  PYILEERQLNVTQMDVFSRLMMDRIIFLGTEIDDYTANTLQAQLLYLDSVDSGKDISIYI 91

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VTAG+ IYDTMQFI   ++T C G AASM ++LL +G++G R AL ++R+++HQ
Sbjct: 92  NSPGGSVTAGLGIYDTMQFISSDVATICTGMAASMAAVLLVSGQEGKRSALTHSRVMIHQ 151

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I K K+ L  I  ++    +E+V +  DR++ M+A EA ++G
Sbjct: 152 PLGGVQGQASDIEIEAKEIQKFKKELYTIISEHSHTPFEKVWQDSDRNYWMTAQEAKEYG 211

Query: 200 VVDKVLMSRI 209
           ++D+VL+ + 
Sbjct: 212 MIDEVLVRKK 221


>gi|325280713|ref|YP_004253255.1| ATP-dependent Clp protease proteolytic subunit [Odoribacter
           splanchnicus DSM 20712]
 gi|324312522|gb|ADY33075.1| ATP-dependent Clp protease proteolytic subunit [Odoribacter
           splanchnicus DSM 20712]
          Length = 225

 Score =  233 bits (596), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 84/190 (44%), Positives = 134/190 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           + P ++E+      + D++SRL+ +RI+F+   I+D +A +I AQLLFLE  +P ++I L
Sbjct: 33  ITPNIIEERQLNIATMDVFSRLMMDRIIFLGVPIDDDVANIIMAQLLFLETADPGRDIQL 92

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y NSPGG + AG+ IYDTMQ+I   ++T C G AASM ++L++AG KG R AL ++RI++
Sbjct: 93  YFNSPGGSIYAGLGIYDTMQYINCDVATICTGLAASMAAVLMTAGTKGKRSALTHSRIMI 152

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP  G  GQA+DIE  ++++ K+K+ L  I  ++ G+ Y++VEK  DRD+ M+A+EA +
Sbjct: 153 HQPMSGVQGQAADIEITSREVQKLKKELYTIISEHSGQPYKKVEKDSDRDYWMTAAEAKE 212

Query: 198 WGVVDKVLMS 207
           +G++D +L  
Sbjct: 213 YGMIDSILTR 222


>gi|167765438|ref|ZP_02437551.1| hypothetical protein BACSTE_03828 [Bacteroides stercoris ATCC
           43183]
 gi|167697066|gb|EDS13645.1| hypothetical protein BACSTE_03828 [Bacteroides stercoris ATCC
           43183]
          Length = 220

 Score =  233 bits (596), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 85/189 (44%), Positives = 131/189 (69%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  QI+D+ A  + AQLL+L++ +P K+IS+YI
Sbjct: 32  PYILEERQLNVTQLDVFSRLMMDRIIFLGTQIDDYTANTLQAQLLYLDSVDPGKDISIYI 91

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V AG+ IYDTMQFI   ++T C G AASM ++LL AG +G R AL ++R+++HQ
Sbjct: 92  NSPGGSVYAGLGIYDTMQFISSDVATICTGMAASMAAVLLVAGAEGKRSALTHSRVMIHQ 151

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I K+K+ L  I   +   ++++V    DRD+ M+A EA ++G
Sbjct: 152 PMGGAQGQASDIEITAREIQKLKKELYTIIADHSHTSFDKVWADSDRDYWMTAQEAKEYG 211

Query: 200 VVDKVLMSR 208
           ++D+V   +
Sbjct: 212 MIDQVYTKK 220


>gi|329957343|ref|ZP_08297863.1| endopeptidase Clp [Bacteroides clarus YIT 12056]
 gi|328523056|gb|EGF50159.1| endopeptidase Clp [Bacteroides clarus YIT 12056]
          Length = 220

 Score =  233 bits (596), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 85/189 (44%), Positives = 131/189 (69%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  QI+D+ A  + AQLL+L++ +P K+IS+YI
Sbjct: 32  PYILEERQLNVTQLDVFSRLMMDRIIFLGTQIDDYTANTLQAQLLYLDSVDPGKDISIYI 91

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V AG+ IYDTMQFI   ++T C G AASM ++LL AG +G R AL ++R+++HQ
Sbjct: 92  NSPGGSVYAGLGIYDTMQFISSDVATICTGMAASMAAVLLVAGAEGKRSALTHSRVMIHQ 151

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I K+K+ L  I   +   ++++V    DRD+ M+A EA ++G
Sbjct: 152 PMGGAQGQASDIEITAREIQKLKKELYTIIADHSHTSFDKVWADSDRDYWMTAQEAKEYG 211

Query: 200 VVDKVLMSR 208
           ++D+V   +
Sbjct: 212 MIDQVYTKK 220


>gi|288905956|ref|YP_003431178.1| ATP-dependent Clp protease, proteolytic subunit [Streptococcus
           gallolyticus UCN34]
 gi|306831975|ref|ZP_07465130.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|306834099|ref|ZP_07467219.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus bovis
           ATCC 700338]
 gi|325978922|ref|YP_004288638.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288732682|emb|CBI14254.1| ATP-dependent Clp protease, proteolytic subunit [Streptococcus
           gallolyticus UCN34]
 gi|304423672|gb|EFM26818.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus bovis
           ATCC 700338]
 gi|304425901|gb|EFM29018.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325178850|emb|CBZ48894.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 196

 Score =  233 bits (596), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 95/192 (49%), Positives = 140/192 (72%), Gaps = 2/192 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  I AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K ++ L +I   N G+T E+V    +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRQNLEQILADNSGQTLEKVHADAERDNWMSAQET 180

Query: 196 CDWGVVDKVLMS 207
            ++G +D+++++
Sbjct: 181 LEYGFIDEIMVN 192


>gi|163786488|ref|ZP_02180936.1| ATP-dependent Clp protease, proteolytic subunit [Flavobacteriales
           bacterium ALC-1]
 gi|159878348|gb|EDP72404.1| ATP-dependent Clp protease, proteolytic subunit [Flavobacteriales
           bacterium ALC-1]
          Length = 224

 Score =  233 bits (596), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 91/192 (47%), Positives = 137/192 (71%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            L P ++E+       +D++SRL+ +RI+F+   + D +A +I AQLLFL++ +  K++ 
Sbjct: 33  NLTPNIIEERQMNIAVFDVFSRLMMDRIIFLGTGVNDQVANIIQAQLLFLQSTDASKDVQ 92

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG V AG+ IYDTMQFIKP ++T C G AASM ++LL AGEKG R AL ++R++
Sbjct: 93  IYINSPGGSVYAGLGIYDTMQFIKPDVATICTGIAASMAAVLLCAGEKGKRSALKHSRVM 152

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP  G  GQ SD+E   ++ +KIK+ L +I   + GKTYE+VEK  DRD+ M+++EA 
Sbjct: 153 IHQPMSGTQGQVSDMEIAVRETLKIKKELYDIISGHSGKTYEQVEKDSDRDYWMTSNEAL 212

Query: 197 DWGVVDKVLMSR 208
           D+G++D+VL  +
Sbjct: 213 DYGMIDEVLGRK 224


>gi|322391649|ref|ZP_08065117.1| ATP-dependent Clp protease, protease subunit [Streptococcus peroris
           ATCC 700780]
 gi|321145460|gb|EFX40853.1| ATP-dependent Clp protease, protease subunit [Streptococcus peroris
           ATCC 700780]
          Length = 196

 Score =  233 bits (596), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 94/192 (48%), Positives = 139/192 (72%), Gaps = 2/192 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q SD+   A+ ++K ++ L +I   N GK+ E++    +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQSDMAIAAEHLLKTRKNLEQILADNSGKSVEQIHVDAERDYWMSAQET 180

Query: 196 CDWGVVDKVLMS 207
            ++G +D+++ +
Sbjct: 181 LEYGFIDEIMAN 192


>gi|309800003|ref|ZP_07694203.1| Clp protease [Streptococcus infantis SK1302]
 gi|308116402|gb|EFO53878.1| Clp protease [Streptococcus infantis SK1302]
          Length = 196

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 93/192 (48%), Positives = 139/192 (72%), Gaps = 2/192 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K ++ L +I   N GK+ E++    +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRKTLEQILADNSGKSVEQIHADAERDYWMSAQET 180

Query: 196 CDWGVVDKVLMS 207
            ++G +D+++ +
Sbjct: 181 LEYGFIDEIMAN 192


>gi|302551410|ref|ZP_07303752.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           viridochromogenes DSM 40736]
 gi|302469028|gb|EFL32121.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           viridochromogenes DSM 40736]
          Length = 219

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 96/206 (46%), Positives = 134/206 (65%), Gaps = 2/206 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYD-IYSRLLKERIVFVTGQIEDHMATLI 59
           M   G   + +      L+P    + + G    D +Y+RLL ERI+F+   ++D +A  I
Sbjct: 1   MRRPGAVVRRAGGYVTNLMPSAAGEPSIGGGLGDHVYNRLLNERIIFLGQPVDDDIANKI 60

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
            AQLL L A+ P K+I +YINSPGG +TAGMAIYDTMQ+IK  + T  MG AASMG  LL
Sbjct: 61  TAQLLLLAAD-PDKDIYMYINSPGGSITAGMAIYDTMQYIKNDVVTIAMGLAASMGQFLL 119

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
           SAG  G RFALPNA IL+HQPS G +G ASDI+ HA+ ++  K+R+ E+  ++ G+T E+
Sbjct: 120 SAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSQHTGQTVEQ 179

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVL 205
           + +  DRD    A EA ++G++D V+
Sbjct: 180 ITRDSDRDRWFDAFEAKEYGLIDDVI 205


>gi|15900641|ref|NP_345245.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae TIGR4]
 gi|15902700|ref|NP_358250.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae R6]
 gi|111657500|ref|ZP_01408244.1| hypothetical protein SpneT_02001290 [Streptococcus pneumoniae
           TIGR4]
 gi|116516216|ref|YP_816144.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae D39]
 gi|148985320|ref|ZP_01818543.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           pneumoniae SP3-BS71]
 gi|148989824|ref|ZP_01821118.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           pneumoniae SP6-BS73]
 gi|148992407|ref|ZP_01822102.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           pneumoniae SP9-BS68]
 gi|148997179|ref|ZP_01824833.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae SP11-BS70]
 gi|149003358|ref|ZP_01828247.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           pneumoniae SP14-BS69]
 gi|149007624|ref|ZP_01831241.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           pneumoniae SP18-BS74]
 gi|149020386|ref|ZP_01835278.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           pneumoniae SP23-BS72]
 gi|168484851|ref|ZP_02709796.1| Clp protease [Streptococcus pneumoniae CDC1873-00]
 gi|168486762|ref|ZP_02711270.1| Clp protease [Streptococcus pneumoniae CDC1087-00]
 gi|168488414|ref|ZP_02712613.1| Clp protease [Streptococcus pneumoniae SP195]
 gi|168490833|ref|ZP_02714976.1| Clp protease [Streptococcus pneumoniae CDC0288-04]
 gi|168492895|ref|ZP_02717038.1| Clp protease [Streptococcus pneumoniae CDC3059-06]
 gi|168575405|ref|ZP_02721341.1| Clp protease [Streptococcus pneumoniae MLV-016]
 gi|169832484|ref|YP_001694209.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae Hungary19A-6]
 gi|182683666|ref|YP_001835413.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae CGSP14]
 gi|221231543|ref|YP_002510695.1| putative ATP-dependent Clp protease proteolytic subunit
           [Streptococcus pneumoniae ATCC 700669]
 gi|225854255|ref|YP_002735767.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae JJA]
 gi|225860721|ref|YP_002742230.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|237650410|ref|ZP_04524662.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae CCRI 1974]
 gi|237822478|ref|ZP_04598323.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae CCRI 1974M2]
 gi|298230046|ref|ZP_06963727.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|298255823|ref|ZP_06979409.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae str. Canada MDR_19A]
 gi|298502532|ref|YP_003724472.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae TCH8431/19A]
 gi|303255838|ref|ZP_07341879.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae BS455]
 gi|303260009|ref|ZP_07345983.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae SP-BS293]
 gi|303261415|ref|ZP_07347363.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae SP14-BS292]
 gi|303264082|ref|ZP_07350003.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae BS397]
 gi|303267620|ref|ZP_07353460.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae BS457]
 gi|303269546|ref|ZP_07355310.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae BS458]
 gi|307067350|ref|YP_003876316.1| ATp-dependent Clp protease [Streptococcus pneumoniae AP200]
 gi|307127702|ref|YP_003879733.1| Clp protease [Streptococcus pneumoniae 670-6B]
 gi|54036855|sp|P63788|CLPP_STRR6 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|54040893|sp|P63787|CLPP_STRPN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|122278970|sp|Q04LF4|CLPP_STRP2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706476|sp|B1IAS4|CLPP_STRPI RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706544|sp|B2INC9|CLPP_STRPS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|254763803|sp|B8ZN39|CLPP_STRPJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|254763805|sp|C1CD96|CLPP_STRZJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|254763807|sp|C1CQK8|CLPP_STRZT RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|14972220|gb|AAK74885.1| ATP-dependent Clp protease, proteolytic subunit [Streptococcus
           pneumoniae TIGR4]
 gi|15458242|gb|AAK99460.1| ATP-dependent CLP protease proteolytic subunit [Streptococcus
           pneumoniae R6]
 gi|116076792|gb|ABJ54512.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           pneumoniae D39]
 gi|147756879|gb|EDK63919.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae SP11-BS70]
 gi|147758541|gb|EDK65539.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           pneumoniae SP14-BS69]
 gi|147760779|gb|EDK67750.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           pneumoniae SP18-BS74]
 gi|147922518|gb|EDK73637.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           pneumoniae SP3-BS71]
 gi|147924766|gb|EDK75850.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           pneumoniae SP6-BS73]
 gi|147928724|gb|EDK79737.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           pneumoniae SP9-BS68]
 gi|147930688|gb|EDK81670.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           pneumoniae SP23-BS72]
 gi|168994986|gb|ACA35598.1| Clp protease [Streptococcus pneumoniae Hungary19A-6]
 gi|172042007|gb|EDT50053.1| Clp protease [Streptococcus pneumoniae CDC1873-00]
 gi|182629000|gb|ACB89948.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae CGSP14]
 gi|183570255|gb|EDT90783.1| Clp protease [Streptococcus pneumoniae CDC1087-00]
 gi|183572984|gb|EDT93512.1| Clp protease [Streptococcus pneumoniae SP195]
 gi|183574558|gb|EDT95086.1| Clp protease [Streptococcus pneumoniae CDC0288-04]
 gi|183577054|gb|EDT97582.1| Clp protease [Streptococcus pneumoniae CDC3059-06]
 gi|183578670|gb|EDT99198.1| Clp protease [Streptococcus pneumoniae MLV-016]
 gi|220674003|emb|CAR68516.1| putative ATP-dependent Clp protease proteolytic subunit
           [Streptococcus pneumoniae ATCC 700669]
 gi|225723038|gb|ACO18891.1| Clp protease [Streptococcus pneumoniae JJA]
 gi|225727276|gb|ACO23127.1| Clp protease [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238127|gb|ADI69258.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae TCH8431/19A]
 gi|301793906|emb|CBW36302.1| putative ATP-dependent Clp protease proteolytic subunit
           [Streptococcus pneumoniae INV104]
 gi|301799764|emb|CBW32333.1| putative ATP-dependent Clp protease proteolytic subunit
           [Streptococcus pneumoniae OXC141]
 gi|301801594|emb|CBW34292.1| putative ATP-dependent Clp protease proteolytic subunit
           [Streptococcus pneumoniae INV200]
 gi|302597222|gb|EFL64327.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae BS455]
 gi|302637549|gb|EFL68036.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae SP14-BS292]
 gi|302638928|gb|EFL69389.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae SP-BS293]
 gi|302640931|gb|EFL71314.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae BS458]
 gi|302642850|gb|EFL73157.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae BS457]
 gi|302646487|gb|EFL76713.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae BS397]
 gi|306408887|gb|ADM84314.1| Protease subunit of ATP-dependent Clp proteases [Streptococcus
           pneumoniae AP200]
 gi|306484764|gb|ADM91633.1| Clp protease [Streptococcus pneumoniae 670-6B]
 gi|327390104|gb|EGE88447.1| clp protease family protein [Streptococcus pneumoniae GA04375]
 gi|332073128|gb|EGI83607.1| clp protease family protein [Streptococcus pneumoniae GA17570]
 gi|332076026|gb|EGI86492.1| clp protease family protein [Streptococcus pneumoniae GA41301]
 gi|332077163|gb|EGI87625.1| clp protease family protein [Streptococcus pneumoniae GA17545]
          Length = 196

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 93/192 (48%), Positives = 139/192 (72%), Gaps = 2/192 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K +  L +I  +N G++ E+V    +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRNTLEKILAENSGQSMEKVHADAERDNWMSAQET 180

Query: 196 CDWGVVDKVLMS 207
            ++G +D+++ +
Sbjct: 181 LEYGFIDEIMAN 192


>gi|256396401|ref|YP_003117965.1| ATP-dependent Clp protease proteolytic subunit [Catenulispora
           acidiphila DSM 44928]
 gi|256362627|gb|ACU76124.1| Endopeptidase Clp [Catenulispora acidiphila DSM 44928]
          Length = 208

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 84/181 (46%), Positives = 124/181 (68%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           S  +Y+RLL+ RI+F+  Q++D +A  +CAQLL L AE+ +K+I  YINSPGG V+AG+A
Sbjct: 20  SDQVYNRLLRNRIIFLGSQVDDDIANSLCAQLLLLTAEDSEKDIYFYINSPGGSVSAGLA 79

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYDTM ++   I T  MG AASMG  LL+AG    RFALPN  ILLHQ S G  G A+DI
Sbjct: 80  IYDTMMYVPNDIVTVGMGMAASMGQFLLTAGTPNKRFALPNTEILLHQGSAGIGGSAADI 139

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
              A+ +++ K+R+ E+  ++ G+T +++EK  DRD   S++EA ++G++D ++    D+
Sbjct: 140 RIQAERLLRSKKRMAELTAQHTGQTLDKIEKDSDRDTWFSSAEAKEYGLIDDIMTHANDV 199

Query: 212 E 212
            
Sbjct: 200 P 200


>gi|39977745|ref|XP_370260.1| hypothetical protein MGG_06757 [Magnaporthe oryzae 70-15]
 gi|145013724|gb|EDJ98365.1| hypothetical protein MGG_06757 [Magnaporthe oryzae 70-15]
          Length = 274

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 93/200 (46%), Positives = 140/200 (70%), Gaps = 7/200 (3%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            +P+V E T  G R+ DI+S+LL+ERIV + G I+D     + AQLL+LE ++P K I+L
Sbjct: 48  PMPLVTEVTAGGWRTSDIFSKLLQERIVCLNGPIDDWTQASVTAQLLWLEQDSPHKPITL 107

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V++G+AIYDTM +I  P+ T C+G AASMG++LL  G  G R+ALP+++I++
Sbjct: 108 YINSPGGQVSSGLAIYDTMNYISSPVHTVCVGMAASMGAILLLGGAAGQRYALPHSQIMV 167

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKN----CGKTY---EEVEKTLDRDHIM 190
           HQP G   GQASDI  +A+ I +I+ ++N+I  ++     G+     +EV++ ++RD  +
Sbjct: 168 HQPLGSTQGQASDIIIYAKQITRIRSQINDIMRRHLNTAAGRERFAAQEVDEMMERDKYL 227

Query: 191 SASEACDWGVVDKVLMSRID 210
           +A EA + G+VDK+L SR D
Sbjct: 228 TADEAVELGIVDKILTSRSD 247


>gi|123230949|emb|CAM15338.1| novel protein similar to human and mouse ClpP caseinolytic
           protease, ATP-dependent, proteolytic subunit homolog (E.
           coli) (CLPP) [Danio rerio]
          Length = 220

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 105/165 (63%), Positives = 137/165 (83%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
             L+P+VVEQT RGER+YDIYSRLL+ERI+ V G I+D +A+L+ AQLLFL++E+  K I
Sbjct: 27  SPLIPIVVEQTGRGERAYDIYSRLLRERIICVMGPIDDSVASLVIAQLLFLQSESNNKPI 86

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVT+G+AIYDTMQ+I  PIST+C+GQAASMGSLLL+AG  GMR +LPNARI
Sbjct: 87  HMYINSPGGVVTSGLAIYDTMQYILNPISTWCVGQAASMGSLLLAAGTAGMRHSLPNARI 146

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           ++HQPSGG  GQA+DI   A++I+K+KR++N IY K+ G+  E +
Sbjct: 147 MVHQPSGGARGQATDIAIQAEEILKLKRQINNIYSKHTGQLLETI 191


>gi|255638490|gb|ACU19554.1| unknown [Glycine max]
          Length = 322

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 75/176 (42%), Positives = 120/176 (68%)

Query: 31  RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGM 90
              D  + LL++RI+F+  Q++D  A  I +QLLFL+AE+ +K+I L+IN PGG VTAGM
Sbjct: 77  EELDATNMLLRQRIIFLGSQVDDMTADFIISQLLFLDAEDSKKDIKLFINPPGGSVTAGM 136

Query: 91  AIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASD 150
            IYD M+  K  +ST C+G AASMG+ +L++G KG R+ +PN+R+++HQP G   G+A++
Sbjct: 137 GIYDAMKLCKADVSTVCLGLAASMGAFILASGTKGKRYCMPNSRVMIHQPLGTAGGKATE 196

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           +    +++   K ++N+I  +  GK  E++E   DRD+ M+  EA ++G+VD V+ 
Sbjct: 197 MSIRIREMAYHKIKINKILSRITGKPEEQIELDTDRDNFMNPWEAKEYGLVDGVID 252


>gi|302545416|ref|ZP_07297758.1| Clp protease [Streptomyces hygroscopicus ATCC 53653]
 gi|302463034|gb|EFL26127.1| Clp protease [Streptomyces himastatinicus ATCC 53653]
          Length = 204

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 96/191 (50%), Positives = 127/191 (66%), Gaps = 1/191 (0%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
             +P    +   G     +Y+RLL ERI+F+   ++D +A  I AQLL L A+ P K+I+
Sbjct: 3   NTMPSAAGEPTGGGLGDQVYNRLLGERIIFLGQPVDDEIANKITAQLLLLAAD-PDKDIN 61

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG ++AGMAIYDTMQFI   + T  MG AASMG  LLSAG  G RFALPNA IL
Sbjct: 62  LYINSPGGSISAGMAIYDTMQFIPNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEIL 121

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPS G +G ASDI+ HA+ ++  KRR+ E+   + G+T E++ +  DRD   SA EA 
Sbjct: 122 IHQPSAGLAGSASDIKIHAERLLHTKRRMAELTAFHTGQTVEQITRDSDRDRWFSAEEAK 181

Query: 197 DWGVVDKVLMS 207
            +G+VD V+ S
Sbjct: 182 AYGLVDDVMAS 192


>gi|290962844|ref|YP_003494026.1| ATP-dependent Clp protease proteolytic subunit 2 [Streptomyces
           scabiei 87.22]
 gi|260652370|emb|CBG75503.1| putative ATP-dependent Clp protease proteolytic subunit 2
           [Streptomyces scabiei 87.22]
          Length = 192

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 90/189 (47%), Positives = 138/189 (73%), Gaps = 1/189 (0%)

Query: 22  VVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS 81
           +VE+T +GERSYD++SRLL ERI+F+  +I+D +A ++ AQLL LE+  P+ EI++YINS
Sbjct: 1   MVERTAQGERSYDVFSRLLSERIIFLGTEIDDGVANVVIAQLLHLESSAPESEIAIYINS 60

Query: 82  PGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP- 140
           PGG  T+ MAIYDTM +++ P+STFC+GQAAS  ++LL+ G+ G RF L +AR+LL QP 
Sbjct: 61  PGGSFTSLMAIYDTMSYVRAPVSTFCVGQAASTAAVLLAGGDAGRRFVLEHARVLLGQPA 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
           SGG  G  SD+   A+++V+I+ ++ E+  ++ G+   E+   +DRD + +A EA  +G+
Sbjct: 121 SGGRQGTVSDLALQAKEMVRIRSQVEEVLARHTGRATAELRADMDRDKVFTAQEAVAYGL 180

Query: 201 VDKVLMSRI 209
            D+VL  R+
Sbjct: 181 ADEVLNRRL 189


>gi|269976479|ref|ZP_06183464.1| Clp protease [Mobiluncus mulieris 28-1]
 gi|307701829|ref|ZP_07638843.1| endopeptidase Clp [Mobiluncus mulieris FB024-16]
 gi|269935280|gb|EEZ91829.1| Clp protease [Mobiluncus mulieris 28-1]
 gi|307613087|gb|EFN92342.1| endopeptidase Clp [Mobiluncus mulieris FB024-16]
          Length = 197

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 94/195 (48%), Positives = 128/195 (65%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P   +       +  IY RLLKERI+++  Q+ +  A  ICAQ+L L AE+P  +I LY
Sbjct: 1   MPHNAKDDAAAPMNDFIYKRLLKERIIWLGTQVAEENANAICAQMLLLAAEDPDSDIYLY 60

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAGMAIYDTMQ+IKP + T  MG AASMG  LL+AG KG RFA P+ARIL+H
Sbjct: 61  INSPGGSVTAGMAIYDTMQYIKPDVVTVTMGMAASMGQFLLTAGAKGKRFATPHARILMH 120

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  G AS++  +A  I+ +K  L +I  +  G T EE+ +  DRDH  +A EA ++
Sbjct: 121 QPLGGVQGTASEVRINADLILAMKNELAQITAERTGHTLEEITRDADRDHWYTAQEALEY 180

Query: 199 GVVDKVLMSRIDIEE 213
           G +D V+ +   +++
Sbjct: 181 GFIDAVVENAEAVKK 195


>gi|311900307|dbj|BAJ32715.1| putative ATP-dependent Clp protease proteolytic subunit
           [Kitasatospora setae KM-6054]
          Length = 198

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 85/193 (44%), Positives = 137/193 (70%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            +P V+E+T +GERSYD++SRLL ERIVF+  +I+D +A ++ AQLL LE+ +P +EI++
Sbjct: 5   PIPYVIERTAQGERSYDVFSRLLNERIVFLGTEIDDGVANVVIAQLLHLESASPDEEIAI 64

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG  T+ MAIYD M F++ PI+T+C+GQAAS  ++LL+ G+ G R  L ++R+LL
Sbjct: 65  YLNSPGGSFTSLMAIYDAMTFVRCPIATYCVGQAASTAAVLLAGGDPGRRSVLRHSRVLL 124

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
            QP SGG  G  SD+   A+++++I+ ++ E+  ++ G     +   +DR+ +  A EA 
Sbjct: 125 GQPASGGRRGTVSDLSLAAKEVLRIRAQVEEVLSRHTGHPVATLRADMDREKVFGADEAV 184

Query: 197 DWGVVDKVLMSRI 209
            +G+ D+VL +R+
Sbjct: 185 AYGLADRVLNNRV 197


>gi|225858557|ref|YP_002740067.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae 70585]
 gi|254763802|sp|C1C691|CLPP_STRP7 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|225721123|gb|ACO16977.1| Clp protease [Streptococcus pneumoniae 70585]
          Length = 196

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 93/192 (48%), Positives = 138/192 (71%), Gaps = 2/192 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED MA  + AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDSMANSVIAQLLFLDAQDSTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K +  L +I  +N G++ E+V    +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRNTLEKILAENSGQSMEKVHADAERDNWMSAQET 180

Query: 196 CDWGVVDKVLMS 207
            ++G +D+++ +
Sbjct: 181 LEYGFIDEIMAN 192


>gi|72162593|ref|YP_290250.1| ClpP1 peptidase [Thermobifida fusca YX]
 gi|124013822|sp|Q47MU2|CLPP2_THEFY RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|71916325|gb|AAZ56227.1| ClpP1 peptidase. Serine peptidase. MEROPS family S14 [Thermobifida
           fusca YX]
          Length = 203

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 90/195 (46%), Positives = 128/195 (65%), Gaps = 11/195 (5%)

Query: 19  VPM--VVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VPM  + EQT +         RLL++RIVF+  Q++D +A  I  +LL L AE+ +++I+
Sbjct: 13  VPMQPMYEQTAQ---------RLLRQRIVFLGQQVDDEIANRIVGELLLLSAEDRERDIT 63

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGMAIYD MQ+I   + T  +G AASMG +LL AG +G R+ALP+ RI+
Sbjct: 64  LYINSPGGSVTAGMAIYDVMQYIPNDVRTVGIGLAASMGQMLLCAGTRGKRYALPHTRIM 123

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  G ASDI   A  ++ +K+   E    + G+  E++EK  DRD   +A EA 
Sbjct: 124 MHQPSGGIGGTASDIRILADQLLYVKKMFLERISLHTGQPVEQIEKDADRDRWFTAQEAL 183

Query: 197 DWGVVDKVLMSRIDI 211
           ++G +D+VL +  D+
Sbjct: 184 EYGFIDEVLTNTPDV 198


>gi|288800853|ref|ZP_06406310.1| Clp protease [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332314|gb|EFC70795.1| Clp protease [Prevotella sp. oral taxon 299 str. F0039]
          Length = 222

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 84/190 (44%), Positives = 131/190 (68%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+   I+D+ A  + AQLL+L++ +  K+IS+YI
Sbjct: 33  PYILEERQLNVTQMDVFSRLMMDRIIFLGTPIDDYTANTLQAQLLYLDSVDSGKDISIYI 92

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VTAG+ IYDTMQFI   ++T C G AASM ++LL +G +G R ALP+ R+++HQ
Sbjct: 93  NSPGGSVTAGLGIYDTMQFITSDVATICTGMAASMAAVLLVSGAEGKRSALPHGRVMIHQ 152

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I+K+K+ L  I   +    +++V +  DR++ M+A EA ++G
Sbjct: 153 PLGGVQGQASDIEIEAREIIKMKKELYTIISDHSHTPFDKVWQDSDRNYWMTAEEAKEYG 212

Query: 200 VVDKVLMSRI 209
           ++D VL  + 
Sbjct: 213 MIDTVLKRKK 222


>gi|254382770|ref|ZP_04998127.1| ATP-dependent Clp protease proteolytic subunit 1 [Streptomyces sp.
           Mg1]
 gi|194341672|gb|EDX22638.1| ATP-dependent Clp protease proteolytic subunit 1 [Streptomyces sp.
           Mg1]
          Length = 227

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 93/206 (45%), Positives = 133/206 (64%), Gaps = 2/206 (0%)

Query: 8   KKDSEDVFLGLVPMVVEQTNRGERSYD-IYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
           ++ +      L P    + + G    D +Y+RLL ERI+F+  Q++D +A  I AQLL L
Sbjct: 16  RRRAGGYVTNLKPYAAGEPSIGGGLGDHVYNRLLGERIIFLGQQVDDDIANKITAQLLLL 75

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
            AE P+K+I LYINSPGG VTAGMA+YDTMQ+I   + T  MG AASMG  LL+ G KG 
Sbjct: 76  AAE-PEKDIYLYINSPGGSVTAGMAVYDTMQYIPNDVVTIGMGMAASMGQFLLTGGAKGK 134

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           RFALPN  IL+HQ S G  G ASDI+  AQ +++ K+R+ EI   + G+T E + +  DR
Sbjct: 135 RFALPNTDILMHQGSAGIGGTASDIKIQAQYLLRTKQRMAEITAFHSGQTVEAIIRDGDR 194

Query: 187 DHIMSASEACDWGVVDKVLMSRIDIE 212
           D   ++ EA D+G++D+++ +  ++ 
Sbjct: 195 DRWFTSEEAKDYGLIDEIISAASNVP 220


>gi|306825611|ref|ZP_07458950.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
 gi|304431972|gb|EFM34949.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
          Length = 196

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 94/192 (48%), Positives = 139/192 (72%), Gaps = 2/192 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K ++ L +I   N GKT E++    +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRKTLEQILADNSGKTVEQIHVDAERDYWMSAQET 180

Query: 196 CDWGVVDKVLMS 207
            ++G +D+++ +
Sbjct: 181 LEYGFIDEIMAN 192


>gi|260909476|ref|ZP_05916180.1| ATP-dependent Clp protease proteolytic subunit [Prevotella sp. oral
           taxon 472 str. F0295]
 gi|288929611|ref|ZP_06423455.1| Clp protease [Prevotella sp. oral taxon 317 str. F0108]
 gi|260636401|gb|EEX54387.1| ATP-dependent Clp protease proteolytic subunit [Prevotella sp. oral
           taxon 472 str. F0295]
 gi|288329116|gb|EFC67703.1| Clp protease [Prevotella sp. oral taxon 317 str. F0108]
          Length = 220

 Score =  233 bits (594), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 85/189 (44%), Positives = 132/189 (69%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  +I D+ A  + AQLL+L++ +  K+IS+YI
Sbjct: 32  PYILEERQLNVTQMDVFSRLMMDRIIFLGTEINDYTANTLQAQLLYLDSADAGKDISIYI 91

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VTAG+ IYDTMQFI   ++T C G AASM ++LL +G++G R ALP++R+++HQ
Sbjct: 92  NSPGGSVTAGLGIYDTMQFISSDVATICTGMAASMAAVLLVSGQEGKRSALPHSRVMIHQ 151

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I+K K+ L  I   +    +E+V    DR++ M+A EA ++G
Sbjct: 152 PLGGVQGQASDIEIEAKEILKFKKELYTIISNHSHTPFEKVWNDSDRNYWMNAEEAKEYG 211

Query: 200 VVDKVLMSR 208
           ++D VL+ +
Sbjct: 212 MIDSVLVKK 220


>gi|187251176|ref|YP_001875658.1| endopeptidase Clp [Elusimicrobium minutum Pei191]
 gi|259585952|sp|B2KCS5|CLPP_ELUMP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|186971336|gb|ACC98321.1| Endopeptidase Clp [Elusimicrobium minutum Pei191]
          Length = 195

 Score =  233 bits (594), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 99/195 (50%), Positives = 144/195 (73%), Gaps = 10/195 (5%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVT---GQIEDHMATLICAQLLFLEAENPQKE 74
           ++P ++E+       YDI+SRLLK+RI+FV    G+++   AT+I AQLL+L+AE+ ++E
Sbjct: 2   IIPTIIEKNVG----YDIFSRLLKDRIIFVGGREGEVDTASATMIIAQLLYLDAEDSERE 57

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I+LYINSPGG+VTAG+AIYDTMQFIK PI+T CMGQA S G++LL+AG KG R+ALP+AR
Sbjct: 58  INLYINSPGGLVTAGLAIYDTMQFIKAPITTICMGQAMSFGAVLLAAGSKGKRYALPHAR 117

Query: 135 ILLHQP---SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           I++HQP    GG SGQ +DIE  + ++ K K  L +I   + G+  E++ +  +R++ MS
Sbjct: 118 IMIHQPLIWGGGISGQVTDIEIESNELRKNKEHLLDILAHHTGQDKEKIRQDSERNYYMS 177

Query: 192 ASEACDWGVVDKVLM 206
           A EA  +G++D+VL 
Sbjct: 178 AQEAKAYGLIDEVLD 192


>gi|326800212|ref|YP_004318031.1| ATP-dependent Clp protease proteolytic subunit [Sphingobacterium
           sp. 21]
 gi|326550976|gb|ADZ79361.1| ATP-dependent Clp protease proteolytic subunit [Sphingobacterium
           sp. 21]
          Length = 225

 Score =  233 bits (594), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 85/206 (41%), Positives = 139/206 (67%)

Query: 2   SFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICA 61
           +F+   +  + +V+  + P + E+        D++SRL+ +RI+F+   ++D +A +I A
Sbjct: 17  TFDQYERWFNRNVYASMTPYITEERQLNVAQMDVFSRLMIDRIIFLGEAVDDRVANIIQA 76

Query: 62  QLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSA 121
           QLLFL++ +P K+I LYIN PGG V AG+ IYDTMQ+I P ++T C G A S G++LL A
Sbjct: 77  QLLFLQSTDPHKDIQLYINCPGGSVYAGLGIYDTMQYITPDVATICTGIALSFGAVLLCA 136

Query: 122 GEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVE 181
           G    R AL +AR+++HQPSGG  G A+D+E +A++I+K+++ L +I   + G++YE V 
Sbjct: 137 GTDKKRAALKHARVMIHQPSGGMQGTAADLEINAREILKLQKELYQIIADHSGQSYEWVH 196

Query: 182 KTLDRDHIMSASEACDWGVVDKVLMS 207
            + +RD+ M+A EA  +G++D+VL  
Sbjct: 197 TSSNRDYWMTAEEAKGYGMIDEVLGK 222


>gi|302534406|ref|ZP_07286748.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sp. C]
 gi|302443301|gb|EFL15117.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sp. C]
          Length = 205

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 91/183 (49%), Positives = 123/183 (67%), Gaps = 1/183 (0%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           E +  G     +Y+RLL ERI+F+  Q++D +A  I AQLL L AE P+K+I LYINSPG
Sbjct: 11  EPSIGGGLGDHVYNRLLGERIIFLGQQVDDDIANKITAQLLLLAAE-PEKDIYLYINSPG 69

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           G VTAGMA+YDTMQ+I   + T  MG AASMG  LL+ G  G RFALPN  IL+HQ S G
Sbjct: 70  GSVTAGMAVYDTMQYIPNDVVTIGMGMAASMGQFLLTGGTPGKRFALPNTDILMHQGSAG 129

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
             G ASDI+  AQ +++ K+R+ EI   + G+T E + +  DRD   +A EA D+G++D+
Sbjct: 130 IGGTASDIKIQAQYLLRTKQRMAEITAHHSGQTVEAIIRDGDRDRWFTAEEAKDYGLIDE 189

Query: 204 VLM 206
           ++ 
Sbjct: 190 IIS 192


>gi|260906246|ref|ZP_05914568.1| Endopeptidase Clp [Brevibacterium linens BL2]
          Length = 198

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 95/190 (50%), Positives = 132/190 (69%), Gaps = 2/190 (1%)

Query: 27  NRGERSYD--IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG 84
             G    D  I++RLLKERI+++  ++ D  A  ICAQ++ L AE+P  +ISLYINSPGG
Sbjct: 9   AGGAMGLDDHIFNRLLKERIIWLGSEVRDSNANAICAQMMLLAAEDPDADISLYINSPGG 68

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
            VTAGMAIYDTMQ+IKP +ST  MG AASMG  LLS+G  G R+A P+ARIL+HQP GG 
Sbjct: 69  SVTAGMAIYDTMQYIKPDVSTVAMGMAASMGQFLLSSGAPGKRYATPHARILMHQPLGGI 128

Query: 145 SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            G A+DI+  A+ I+ +K+++ E+  +  GKT E++ K  DRDH  +A EA ++G +DK+
Sbjct: 129 GGTATDIKIQAELILHMKKQMAELTAEQTGKTLEQILKDNDRDHWFTAEEALEYGFIDKM 188

Query: 205 LMSRIDIEEK 214
           +    D+ + 
Sbjct: 189 VTRSSDVTDN 198


>gi|317504964|ref|ZP_07962912.1| ATP-dependent Clp protease, protease subunit [Prevotella salivae
           DSM 15606]
 gi|315663846|gb|EFV03565.1| ATP-dependent Clp protease, protease subunit [Prevotella salivae
           DSM 15606]
          Length = 221

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 84/190 (44%), Positives = 134/190 (70%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  +I+D+ A  + AQLL+L++ +  K+IS+YI
Sbjct: 32  PYILEERQLNVTQMDVFSRLMMDRIIFLGTEIDDYTANTLQAQLLYLDSVDSGKDISIYI 91

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VTAG+ IYDTMQFI   ++T C G AASM ++LL +G++G R AL ++R+++HQ
Sbjct: 92  NSPGGSVTAGLGIYDTMQFISSDVATICTGMAASMAAVLLVSGQEGKRSALTHSRVMIHQ 151

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I K K+ L  I  ++    +E+V K  DR++ M++ EA ++G
Sbjct: 152 PLGGVQGQASDIEIEAKEIQKFKKELYTIISEHSHTPFEKVWKDSDRNYWMTSQEAKEYG 211

Query: 200 VVDKVLMSRI 209
           ++D+VL+ + 
Sbjct: 212 MIDEVLVRKK 221


>gi|307324650|ref|ZP_07603856.1| Endopeptidase Clp [Streptomyces violaceusniger Tu 4113]
 gi|306889532|gb|EFN20512.1| Endopeptidase Clp [Streptomyces violaceusniger Tu 4113]
          Length = 201

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 91/192 (47%), Positives = 136/192 (70%), Gaps = 1/192 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVE+T +GER+YDIYSRLL ERI+F+  +I+D +A ++ AQLL LE+ + ++EI++Y
Sbjct: 6   IPTVVERTTQGERAYDIYSRLLSERIIFLGTEIDDGVANVVIAQLLHLESSSSEQEIAIY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  T+ MAIYDTM F+  PISTFC+GQAAS  ++LL+ G+ G RF L +AR+LL 
Sbjct: 66  INSPGGSFTSLMAIYDTMTFVSAPISTFCVGQAASTAAVLLAGGDPGRRFVLEHARVLLG 125

Query: 139 QP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP SGG  G  SD+   A+++++I+ ++ E+  ++       +   +DRD + +A EA  
Sbjct: 126 QPVSGGQQGTVSDLSLQAKEMLRIRSQVEEVLARHTPHDAATLRADMDRDKVFTAREAVT 185

Query: 198 WGVVDKVLMSRI 209
           +G+ D+VL  R 
Sbjct: 186 YGLADEVLSRRA 197


>gi|302869360|ref|YP_003837997.1| endopeptidase Clp [Micromonospora aurantiaca ATCC 27029]
 gi|315504165|ref|YP_004083052.1| endopeptidase clp [Micromonospora sp. L5]
 gi|302572219|gb|ADL48421.1| Endopeptidase Clp [Micromonospora aurantiaca ATCC 27029]
 gi|315410784|gb|ADU08901.1| Endopeptidase Clp [Micromonospora sp. L5]
          Length = 213

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 92/187 (49%), Positives = 126/187 (67%)

Query: 29  GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTA 88
           G     +Y+RLLKERI+F+  ++ D +A  ICAQLL L AE+P ++I L+INSPGG V +
Sbjct: 23  GNLDDSVYNRLLKERIIFLGSEVNDQVANRICAQLLLLAAEDPDRDIFLWINSPGGSVYS 82

Query: 89  GMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQA 148
           GMAIYDTMQ+I   +ST  MG AASMG LLL AG KG R+ALP+ARI++HQPSGG  G A
Sbjct: 83  GMAIYDTMQYIDNDVSTVAMGMAASMGQLLLCAGTKGKRYALPHARIMMHQPSGGLGGTA 142

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           SDI   A+ ++  KR   E    + G++  ++E   DRD   +A EA D+G +DKV++  
Sbjct: 143 SDIAIQAEQMLYTKRMFQERVAFHTGQSQAQIEADSDRDRWFTAQEAMDYGFIDKVIIGA 202

Query: 209 IDIEEKS 215
             + + +
Sbjct: 203 AQVPDGA 209


>gi|213160794|ref|ZP_03346504.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
          Length = 155

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 95/154 (61%), Positives = 127/154 (82%)

Query: 55  MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASM 114
           MA LI AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASM
Sbjct: 1   MANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASM 60

Query: 115 GSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCG 174
           G+ LL+AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+   + G
Sbjct: 61  GAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTG 120

Query: 175 KTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           ++ E++E+  +RD  +SA EA ++G+VD +L  R
Sbjct: 121 QSLEQIERDTERDRFLSAPEAVEYGLVDSILTHR 154


>gi|116490635|ref|YP_810179.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oenococcus
           oeni PSU-1]
 gi|290890048|ref|ZP_06553131.1| hypothetical protein AWRIB429_0521 [Oenococcus oeni AWRIB429]
 gi|116091360|gb|ABJ56514.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oenococcus
           oeni PSU-1]
 gi|290480239|gb|EFD88880.1| hypothetical protein AWRIB429_0521 [Oenococcus oeni AWRIB429]
          Length = 198

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 100/198 (50%), Positives = 138/198 (69%), Gaps = 2/198 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           + P V+EQT  G  SYD+ SRLLK+RI+ V G++ED MAT I AQLLFL+A++P K+I +
Sbjct: 1   MWPGVIEQTANGRESYDLPSRLLKDRIILVQGEVEDQMATSIVAQLLFLDAQDPNKDIYM 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGMAI DTM FI+  + T  MG AASM +++ S+G KG RF LPNA  L+
Sbjct: 61  YINSPGGSVTAGMAIVDTMNFIRSDVQTIVMGMAASMATIIASSGTKGKRFMLPNAEYLI 120

Query: 138 HQPSGGFSG--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP GG     Q +D+   A  ++K ++RLN I  +N GK  E++EK  +RDH M + E 
Sbjct: 121 HQPMGGAGAGTQQTDMSIIADQLLKTRKRLNNILKENSGKPIEKIEKDTERDHWMDSKET 180

Query: 196 CDWGVVDKVLMSRIDIEE 213
            D+G++DK+L+++   + 
Sbjct: 181 LDYGLIDKILINKEKNKS 198


>gi|329937608|ref|ZP_08287127.1| ATP-dependent Clp protease proteolytic subunit 1 [Streptomyces
           griseoaurantiacus M045]
 gi|329303007|gb|EGG46895.1| ATP-dependent Clp protease proteolytic subunit 1 [Streptomyces
           griseoaurantiacus M045]
          Length = 212

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 91/204 (44%), Positives = 128/204 (62%), Gaps = 1/204 (0%)

Query: 13  DVFLGLVPMVVEQTNRGERSYD-IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
              L L P   E      R  D + ++LL +RIVF+  Q+++  A  ICAQLL L AE+P
Sbjct: 2   APPLTLAPRAAEGDTPPSRFDDQLAAQLLNQRIVFLGTQVDEVSANRICAQLLLLSAEDP 61

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           + +I LYINSPGG VTAG+AIYDTM+ I   +ST  MG AASMG  LL+ G  G R ALP
Sbjct: 62  RTDIGLYINSPGGSVTAGLAIYDTMRLIPNDVSTLVMGFAASMGQFLLTVGAPGKRLALP 121

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           NARI++HQPS G  G  +DIE  A+++   K+ +  I  ++ G++ E + +  DRD   +
Sbjct: 122 NARIMMHQPSAGIGGTTADIEIQAENLAFTKKAIERITAEHTGQSEETISRDGDRDRWFT 181

Query: 192 ASEACDWGVVDKVLMSRIDIEEKS 215
           A +A D+G+VD+V+ S  D+   +
Sbjct: 182 AEQARDYGIVDRVVESLADVRPAA 205


>gi|312195811|ref|YP_004015872.1| endopeptidase Clp [Frankia sp. EuI1c]
 gi|311227147|gb|ADP80002.1| Endopeptidase Clp [Frankia sp. EuI1c]
          Length = 210

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 99/192 (51%), Positives = 145/192 (75%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P ++E+T+RGE   D YS+LLKERIVF+  QI+D  A  + AQLLFLE+E+P ++IS+
Sbjct: 11  VLPNIIEKTSRGEYGMDPYSKLLKERIVFLGVQIDDVSANDVMAQLLFLESEDPDRDISI 70

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+  AIYDTMQF++P I T CMGQAAS  ++LL+AG  G RFAL N+RIL+
Sbjct: 71  YINSPGGSFTSLTAIYDTMQFVRPDIQTICMGQAASAAAVLLAAGTPGKRFALQNSRILI 130

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSG   GQ+SDIE  A++I++++  L ++   + GK  E++ + ++RD I+SA EA +
Sbjct: 131 HQPSGSGEGQSSDIEIQAREILRMRSLLEKMLADHTGKAEEDIRRDIERDKILSADEAKE 190

Query: 198 WGVVDKVLMSRI 209
           +G++D+V+ +R 
Sbjct: 191 YGLIDEVIKTRK 202


>gi|320547331|ref|ZP_08041622.1| ATP-dependent Clp protease, protease subunit [Streptococcus equinus
           ATCC 9812]
 gi|320448029|gb|EFW88781.1| ATP-dependent Clp protease, protease subunit [Streptococcus equinus
           ATCC 9812]
          Length = 196

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 95/192 (49%), Positives = 140/192 (72%), Gaps = 2/192 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  I AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGIAASMGTIIASSGTKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K ++ L +I   N G+T E+V    +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRQNLEQILADNSGQTLEKVHADAERDNWMSAQET 180

Query: 196 CDWGVVDKVLMS 207
            ++G +D+++++
Sbjct: 181 LEYGFIDEIMVN 192


>gi|289641548|ref|ZP_06473710.1| Endopeptidase Clp [Frankia symbiont of Datisca glomerata]
 gi|289508643|gb|EFD29580.1| Endopeptidase Clp [Frankia symbiont of Datisca glomerata]
          Length = 211

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 86/181 (47%), Positives = 121/181 (66%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +++RLL+ERI+F+   +ED +A  I  QLL L AE+P ++ISLYINSPGG V+AGMAIYD
Sbjct: 28  VFNRLLRERIIFLGSVVEDQIANTIIGQLLLLSAEDPNRDISLYINSPGGSVSAGMAIYD 87

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            MQ+++  I T  +G AASMG  LL AG  G R++LP+ RI++HQPSGG  G ASDI   
Sbjct: 88  VMQYVENDIVTVALGLAASMGQFLLCAGTAGKRYSLPHTRIMMHQPSGGIGGTASDIAIQ 147

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           A+ ++  KR + E    + G+  E++E+  DRD   +A EA D+G VD V+     +  +
Sbjct: 148 AEQMLYTKRMMQERIAFHTGQPVEQIERDSDRDRWFTAVEAKDYGFVDHVVSQARQVPSE 207

Query: 215 S 215
           S
Sbjct: 208 S 208


>gi|229915491|gb|ACQ90835.1| proteolytic subunit 2 of clp protease [Pedinomonas minor]
          Length = 199

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 79/188 (42%), Positives = 128/188 (68%), Gaps = 2/188 (1%)

Query: 19  VPMVVEQTNR--GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +     G +  D+Y+R+ +ER++F   +++D  A  +   +L+L AE+  K + 
Sbjct: 5   VPKVPFRMPGESGAQWVDLYNRMYRERVLFFCQELDDEFANQLIGIMLYLNAEDANKPLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VT G+A+YDTM +IK  +ST C+G AASM S +L+ G+KG R ALP+ARI+
Sbjct: 65  IYINSPGGSVTCGIAVYDTMNYIKCGVSTICVGTAASMASFVLAGGDKGNRIALPHARIM 124

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQAS++   ++++++I+R++  IY +  G+    + + LDRD  +SA EA 
Sbjct: 125 IHQPEGGSQGQASEVLSESEEVLRIRRQVGRIYAEKTGQPLNRISRDLDRDQFLSAKEAK 184

Query: 197 DWGVVDKV 204
           ++G++DK+
Sbjct: 185 EYGLIDKI 192


>gi|302549887|ref|ZP_07302229.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           viridochromogenes DSM 40736]
 gi|302467505|gb|EFL30598.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           viridochromogenes DSM 40736]
          Length = 211

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 81/194 (41%), Positives = 132/194 (68%), Gaps = 2/194 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G+R+ D YS+LL+ERIVF+   +++  A  + AQ ++LE   P ++ISL
Sbjct: 9   VLPEFTERTGSGQRTMDPYSKLLEERIVFLGTPVDETSANDVMAQFMYLEHHAPDRDISL 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG   A  A+YDTMQ+I   + T C+GQA +  S+LL+AG  G R  LP+AR+++
Sbjct: 69  YINSPGGTFHAMTALYDTMQYINCDVETVCLGQAGAAASMLLAAGTPGKRSVLPDARLVI 128

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+      GQASD+   A ++++I+ R+ E+  ++ G+T E+V   ++RD I++A EA
Sbjct: 129 HQPALPEPVHGQASDLAIQADELMRIRTRMEEMLARHTGRTREQVSADIERDKILTAQEA 188

Query: 196 CDWGVVDKVLMSRI 209
            ++G+VD+++ +R 
Sbjct: 189 VEYGLVDRIVPNRK 202


>gi|198276174|ref|ZP_03208705.1| hypothetical protein BACPLE_02363 [Bacteroides plebeius DSM 17135]
 gi|198270986|gb|EDY95256.1| hypothetical protein BACPLE_02363 [Bacteroides plebeius DSM 17135]
          Length = 224

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 86/192 (44%), Positives = 133/192 (69%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  QI+D+ A  + AQLL+L++ +  K+IS+YI
Sbjct: 33  PYILEERQLNVTQLDVFSRLMMDRIIFLGTQIDDYTANTLQAQLLYLDSVDSGKDISIYI 92

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V AG+ IYDTMQFI   ++T C G AASM ++LL AG++G R AL ++R+++HQ
Sbjct: 93  NSPGGSVYAGLGIYDTMQFISSDVATICTGMAASMAAVLLVAGKEGKRSALTHSRVMIHQ 152

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I K+K+ L  I   +    +++V    DRD+ M+ASEA ++G
Sbjct: 153 PMGGAQGQASDIEITAREIQKLKKELYTIIADHSHTDFDKVWADSDRDYWMTASEAKEYG 212

Query: 200 VVDKVLMSRIDI 211
           ++D+VL  +  +
Sbjct: 213 MIDEVLSRKPSL 224


>gi|256372514|ref|YP_003110338.1| Endopeptidase Clp [Acidimicrobium ferrooxidans DSM 10331]
 gi|256009098|gb|ACU54665.1| Endopeptidase Clp [Acidimicrobium ferrooxidans DSM 10331]
          Length = 211

 Score =  232 bits (592), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 84/197 (42%), Positives = 124/197 (62%), Gaps = 7/197 (3%)

Query: 19  VPMVVEQTNRG-------ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           +P +VE + R        E   D++ RLL+ERIVF+  ++    A  ICAQLL L AE+P
Sbjct: 3   LPALVEGSVRDLADAAGIEAGGDVFQRLLRERIVFLGTEVSQASANQICAQLLLLAAEDP 62

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +++IS  INSPGG +  G+A+YDTMQ++   +ST  +G AASM   LL AG  G R+ALP
Sbjct: 63  ERDISFIINSPGGSIYDGLAVYDTMQYVSCDVSTIAIGMAASMAQFLLCAGTHGKRYALP 122

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           +ARIL+HQP     GQA+DI   A+ I  +KR+L E    + G+  E ++   +RD   +
Sbjct: 123 HARILMHQPLAQMQGQAADIAIQAEQITYLKRQLAERIAFHTGQPLERIQADSERDRWFT 182

Query: 192 ASEACDWGVVDKVLMSR 208
           A EA ++G +D+V+ ++
Sbjct: 183 ADEALEYGFIDQVIRTK 199


>gi|159465135|ref|XP_001690778.1| active subunit of chloroplast ClpP peptidase [Chlamydomonas
           reinhardtii]
 gi|158279464|gb|EDP05224.1| active subunit of chloroplast ClpP peptidase [Chlamydomonas
           reinhardtii]
          Length = 345

 Score =  232 bits (592), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 85/186 (45%), Positives = 126/186 (67%), Gaps = 2/186 (1%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P+V  +T   E   D +  LL++RIVF+ G++ED  A  I +QLL L++++P K+I ++I
Sbjct: 53  PIVAPRTA--EMQGDPFGLLLRQRIVFLGGEVEDFGADAIISQLLLLDSQDPTKDIKIFI 110

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VTAGM IYD M   +  ++T+C G AASMG+ LL AG++G R ++PN+RI++HQ
Sbjct: 111 NSPGGSVTAGMGIYDAMMLCRADVNTYCFGLAASMGAFLLGAGKRGKRNSMPNSRIMIHQ 170

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG SGQA DIE  A++I+  K  LN I    C +   ++E+  DRD  MS  EA ++G
Sbjct: 171 PLGGASGQAVDIEIQAKEIMYHKANLNRIMADYCQQPLSKIEEDTDRDRYMSPLEAKEYG 230

Query: 200 VVDKVL 205
           ++D ++
Sbjct: 231 LIDHII 236


>gi|296111257|ref|YP_003621639.1| ATP-dependent Clp protease proteolytic subunit [Leuconostoc kimchii
           IMSNU 11154]
 gi|295832789|gb|ADG40670.1| ATP-dependent Clp protease proteolytic subunit [Leuconostoc kimchii
           IMSNU 11154]
          Length = 201

 Score =  232 bits (592), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 101/201 (50%), Positives = 135/201 (67%), Gaps = 2/201 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           + P V+EQT  G  SYD+ SRLLK+RI+ V G++ED MAT I AQLLFLEA++P KEIS+
Sbjct: 1   MWPGVIEQTANGRESYDLPSRLLKDRIILVQGEVEDSMATSIVAQLLFLEAQDPTKEISM 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG++I DTM FIK P++T  MG AASMG+++ S+GEKG RF LPNA  L+
Sbjct: 61  YINSPGGSVTAGLSITDTMNFIKAPVTTIVMGLAASMGTIIASSGEKGHRFMLPNAEYLI 120

Query: 138 HQPSGGFSG--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP GG  G  Q +D+   A+ + K + +LN+I      K  E +    +RD+ MSA E 
Sbjct: 121 HQPMGGAVGGTQQTDMAIIAEQLTKTRAKLNKILADASDKDLETIAHDTERDNWMSAEET 180

Query: 196 CDWGVVDKVLMSRIDIEEKSK 216
            ++G +D +L    +     K
Sbjct: 181 LEYGFIDGILSKAGEKPVTKK 201


>gi|297563813|ref|YP_003682786.1| Endopeptidase Clp [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
 gi|296848262|gb|ADH70280.1| Endopeptidase Clp [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
          Length = 207

 Score =  232 bits (592), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 92/190 (48%), Positives = 139/190 (73%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VPMVVE+T  GERS+D++SRLL ERI+F+   I+D +A ++ AQ+L L+ E+ + +I LY
Sbjct: 7   VPMVVERTPHGERSFDVFSRLLSERIIFLGTPIDDDVANVVMAQMLHLDYESSETDIQLY 66

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TA  AIYDTM+F++  ++T CMGQAAS  ++LL+AG  G R AL +AR+LLH
Sbjct: 67  INSPGGSNTALTAIYDTMRFVRADVATVCMGQAASAAAVLLAAGTAGKRTALEHARVLLH 126

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSG   G A+D+E  A++I++++ ++ EI  ++ G+T E +    DRD I +A +A ++
Sbjct: 127 QPSGEGQGVAADLEIQAEEILRVRSQVEEILARHTGQTQERLRADTDRDKIFTAQQAKEY 186

Query: 199 GVVDKVLMSR 208
           G+VD ++ +R
Sbjct: 187 GLVDGIITTR 196


>gi|223369879|gb|ACM88806.1| ATP-dependent Clp protease proteolytic subunit [Chlorella
           sorokiniana]
          Length = 201

 Score =  232 bits (592), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 76/188 (40%), Positives = 127/188 (67%), Gaps = 2/188 (1%)

Query: 19  VPMVVEQTNRGE--RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +       +  D+Y+RL +ER++F+  +++D +A  +   +L+L AE   K + 
Sbjct: 5   VPKVPFRLPGEPAAQWVDLYNRLYRERVLFLCQELDDELANQLIGIMLYLNAEEQNKGLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VT G+A+YD M +IK  ++T C+G AASM S +L+ G++G R ALP++RI+
Sbjct: 65  IYINSPGGSVTCGIAVYDAMNYIKSDVTTICVGTAASMASFILAGGDRGKRIALPHSRIM 124

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQAS++   ++++++I+R++  IY +  G+    + + +DRD  +SA EA 
Sbjct: 125 IHQPEGGSQGQASEVLSESEEVMRIRRQVGRIYAERTGQPLSRISRDMDRDQFLSAREAK 184

Query: 197 DWGVVDKV 204
           D+G+VD+V
Sbjct: 185 DYGLVDQV 192


>gi|319953653|ref|YP_004164920.1| ATP-dependent clp protease proteolytic subunit [Cellulophaga
           algicola DSM 14237]
 gi|319422313|gb|ADV49422.1| ATP-dependent Clp protease proteolytic subunit [Cellulophaga
           algicola DSM 14237]
          Length = 226

 Score =  232 bits (592), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 90/210 (42%), Positives = 134/210 (63%), Gaps = 3/210 (1%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           M ++             + P ++E+      + D++SRL+ +RI+F+   I D +A ++ 
Sbjct: 20  MYYDKIMSSM---YPTNMTPNIIEERQLNAIAMDVFSRLMMDRIIFLGTGINDQVANIVQ 76

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE+ +  K+I +YINSPGG V AG+ IYDTMQ+IKP ++T C G AASMG++LL 
Sbjct: 77  AQLLFLESADASKDIQIYINSPGGSVYAGLGIYDTMQYIKPDVATICTGMAASMGAVLLC 136

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AGEKG R  L ++R+++HQP GG  GQASDIE  A++I+K+K  L EI   +     E+V
Sbjct: 137 AGEKGKRSGLTHSRVMIHQPMGGAQGQASDIEITAREILKLKDELYEIIALHSNHDIEKV 196

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRID 210
               DRD+ M A EA  +G++D++L+    
Sbjct: 197 RDDSDRDYWMKADEAKVYGMIDEILVRETK 226


>gi|271964885|ref|YP_003339081.1| endopeptidase Clp [Streptosporangium roseum DSM 43021]
 gi|270508060|gb|ACZ86338.1| Endopeptidase Clp [Streptosporangium roseum DSM 43021]
          Length = 192

 Score =  232 bits (592), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 82/181 (45%), Positives = 121/181 (66%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL++RIV +  ++ D +A  IC +LL L A + + +I LYINSPGG V+AGMAIYD
Sbjct: 12  LYQRLLRKRIVVLGSEVNDEVANRICGELLLLSAGDDRSDIWLYINSPGGSVSAGMAIYD 71

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            MQ+I   ++T  MG A SMG  LL AG  G R+ALP+ARI++HQPSGG  G ASDI   
Sbjct: 72  VMQYIPNDVATVGMGLAGSMGQFLLCAGAPGKRYALPHARIMMHQPSGGVGGTASDIVIQ 131

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           A+ ++  K+ ++E    + G+  E++E+  DRD   +A+EA D+G+VD+V+    ++   
Sbjct: 132 AEQMLYTKQMMSERIAFHTGQPLEQIEEDWDRDRWFTATEAKDYGLVDEVIRKTSEVPSA 191

Query: 215 S 215
           +
Sbjct: 192 N 192


>gi|158317029|ref|YP_001509537.1| ATP-dependent Clp protease proteolytic subunit [Frankia sp.
           EAN1pec]
 gi|158112434|gb|ABW14631.1| Endopeptidase Clp [Frankia sp. EAN1pec]
          Length = 214

 Score =  232 bits (592), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 100/192 (52%), Positives = 142/192 (73%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P ++E+T+RGE   D YS+LLKERIVF+   I+D  A  + AQLLFLE+E+P ++IS+
Sbjct: 15  VLPNIIEKTSRGEYGMDPYSKLLKERIVFLGAPIDDTSANDVMAQLLFLESEDPDRDISI 74

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+  AIYDTMQF++P I T CMGQAAS  ++LL+AG  G RFAL N+RIL+
Sbjct: 75  YINSPGGSFTSLTAIYDTMQFVRPDIQTICMGQAASAAAVLLAAGTPGKRFALQNSRILI 134

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPS    GQ+SDIE  A++I++++  L  +  ++ G+T E V K ++RD I SA EA D
Sbjct: 135 HQPSAQGEGQSSDIEIQAREILRMRSLLEHMLAEHTGRTEEAVRKDIERDKIFSADEAKD 194

Query: 198 WGVVDKVLMSRI 209
           +G++D+V+ +R 
Sbjct: 195 YGIIDEVIKTRK 206


>gi|319900084|ref|YP_004159812.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bacteroides
           helcogenes P 36-108]
 gi|319415115|gb|ADV42226.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bacteroides
           helcogenes P 36-108]
          Length = 220

 Score =  232 bits (592), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 85/189 (44%), Positives = 131/189 (69%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  QI+D+ A  + AQLL+L++ +P K+IS+YI
Sbjct: 32  PYILEERQLNVTQLDVFSRLMMDRIIFLGTQIDDYTANTLQAQLLYLDSVDPGKDISIYI 91

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V AG+ IYDTMQFI   ++T C G AASM ++LL +G +  R AL ++R+++HQ
Sbjct: 92  NSPGGSVYAGLGIYDTMQFISSDVATICTGMAASMAAVLLVSGAESKRSALTHSRVMIHQ 151

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I K+K+ L  I   +    +++V    DRD+ M+A EA ++G
Sbjct: 152 PMGGAQGQASDIEITAREIQKLKKELYAIIADHSHTDFDKVWADSDRDYWMTAQEAKEYG 211

Query: 200 VVDKVLMSR 208
           +VD+VL+ +
Sbjct: 212 MVDEVLIKK 220


>gi|55820449|ref|YP_138891.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           thermophilus LMG 18311]
 gi|55822333|ref|YP_140774.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           thermophilus CNRZ1066]
 gi|116627271|ref|YP_819890.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           thermophilus LMD-9]
 gi|67460179|sp|Q5M1A8|CLPP_STRT1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|67460181|sp|Q5M5U4|CLPP_STRT2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|122268126|sp|Q03M78|CLPP_STRTD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|55736434|gb|AAV60076.1| ATP-dependent Clp protease, proteolytic subunit [Streptococcus
           thermophilus LMG 18311]
 gi|55738318|gb|AAV61959.1| ATP-dependent Clp protease, proteolytic subunit [Streptococcus
           thermophilus CNRZ1066]
 gi|116100548|gb|ABJ65694.1| ATP-dependent Clp protease proteolytic subunit ClpP [Streptococcus
           thermophilus LMD-9]
 gi|312277759|gb|ADQ62416.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           thermophilus ND03]
          Length = 196

 Score =  232 bits (592), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 95/192 (49%), Positives = 137/192 (71%), Gaps = 2/192 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG IED+MA  I AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPIEDNMANSIIAQLLFLDAQDNTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K +  L +I   N G+  E+V    +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRNNLEQILADNSGQPIEKVHVDAERDNWMSAQET 180

Query: 196 CDWGVVDKVLMS 207
            ++G +D+++ +
Sbjct: 181 LEYGFIDEIMTN 192


>gi|322385045|ref|ZP_08058695.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           cristatus ATCC 51100]
 gi|321270955|gb|EFX53865.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           cristatus ATCC 51100]
          Length = 202

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 94/192 (48%), Positives = 139/192 (72%), Gaps = 2/192 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A++  K+I L
Sbjct: 7   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYL 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 67  YVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMI 126

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K +R L +I   N GK+ E++    +RD+ MSA E 
Sbjct: 127 HQPMGGTGGGTQQTDMAIAAEHLLKTRRTLEQILADNSGKSVEQIHADAERDYWMSAQET 186

Query: 196 CDWGVVDKVLMS 207
            ++G +D+++ +
Sbjct: 187 LEYGFIDEIMAN 198


>gi|116617520|ref|YP_817891.1| ATP-dependent Clp protease proteolytic subunit ClpP [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|227432636|ref|ZP_03914612.1| ATP-dependent Clp protease proteolytic subunit ClpP [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
 gi|116096367|gb|ABJ61518.1| ATP-dependent Clp protease proteolytic subunit ClpP [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|227351606|gb|EEJ41856.1| ATP-dependent Clp protease proteolytic subunit ClpP [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
          Length = 200

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 99/197 (50%), Positives = 137/197 (69%), Gaps = 2/197 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           + P V+EQT  G  +YD+ SRLLK+RI+ V G+IED MAT I AQLLFLEA++P KEIS+
Sbjct: 1   MWPGVIEQTANGRENYDLPSRLLKDRIILVQGEIEDSMATSIVAQLLFLEAQDPTKEISM 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG++I DTM FIK P++T  MG AASMG+++ ++GEKG RF LPNA  L+
Sbjct: 61  YINSPGGSVTAGLSITDTMNFIKAPVTTIVMGLAASMGTIIAASGEKGHRFMLPNAEYLI 120

Query: 138 HQPSGGFSG--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP GG +G  Q +D+   A+ + K + +LN+I     GK  + + +  +RD+ MSA E 
Sbjct: 121 HQPMGGAAGGTQQTDMAIIAEQLTKTRAKLNKILADASGKDLKVIGRDTERDNWMSAEET 180

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G +D +L    +  
Sbjct: 181 LEYGFIDGILTKSGEKP 197


>gi|225856422|ref|YP_002737933.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae P1031]
 gi|254763806|sp|C1CJJ5|CLPP_STRZP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|225724460|gb|ACO20312.1| Clp protease [Streptococcus pneumoniae P1031]
          Length = 196

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 93/192 (48%), Positives = 139/192 (72%), Gaps = 2/192 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K +  L +I  +N G++ E+V    +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRNTLEKILAENSGQSMEKVHADAERDNWMSAHET 180

Query: 196 CDWGVVDKVLMS 207
            ++G +D+++ +
Sbjct: 181 LEYGFIDEIMAN 192


>gi|21221076|ref|NP_626855.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           coelicolor A3(2)]
 gi|289771640|ref|ZP_06531018.1| Clp protease [Streptomyces lividans TK24]
 gi|17373508|sp|Q9F315|CLPP1_STRCO RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|10280519|emb|CAC09995.1| ATP dependent Clp protease proteolytic subunit 1 [Streptomyces
           coelicolor A3(2)]
 gi|289701839|gb|EFD69268.1| Clp protease [Streptomyces lividans TK24]
          Length = 219

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 97/206 (47%), Positives = 134/206 (65%), Gaps = 2/206 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYD-IYSRLLKERIVFVTGQIEDHMATLI 59
           M   G   + +      L+P    + + G    D +Y+RLL ERI+F+   ++D +A  I
Sbjct: 1   MRRPGAVVRRAGGYVTNLMPSAAGEPSIGGGLGDQVYNRLLGERIIFLGQPVDDDIANKI 60

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
            AQLL L ++ P K+I LYINSPGG +TAGMAIYDTMQ+IK  + T  MG AASMG  LL
Sbjct: 61  TAQLLLLASD-PDKDIFLYINSPGGSITAGMAIYDTMQYIKNDVVTIAMGLAASMGQFLL 119

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
           SAG  G RFALPNA IL+HQPS G +G ASDI+ HA+ ++  KRR+ E+  ++ G+T E+
Sbjct: 120 SAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKRRMAELTSQHTGQTIEQ 179

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVL 205
           + +  DRD    A EA ++G++D V+
Sbjct: 180 ITRDSDRDRWFDAFEAKEYGLIDDVI 205


>gi|220912907|ref|YP_002488216.1| endopeptidase Clp [Arthrobacter chlorophenolicus A6]
 gi|219859785|gb|ACL40127.1| Endopeptidase Clp [Arthrobacter chlorophenolicus A6]
          Length = 206

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 93/170 (54%), Positives = 121/170 (71%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IY+RLLKERI+++  ++ D  A  IC+QLL L AENP+K+I LYINSPGG VTAGMAIYD
Sbjct: 13  IYNRLLKERIIWLGSEVRDDNANAICSQLLLLSAENPEKDIYLYINSPGGSVTAGMAIYD 72

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQFI   + T   G AASMG  LLS+G KG R+A PNAR+L+HQPSGG  G ASDI+  
Sbjct: 73  TMQFIPNDVVTVATGLAASMGQFLLSSGTKGKRYATPNARVLMHQPSGGIGGTASDIKIQ 132

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           A+ I+ +K+ + E+     G+T E + K  DRD   +A+EA ++G  DK+
Sbjct: 133 AELILHMKKVMAELTADQTGQTVETILKDNDRDKWFTAAEALEYGFFDKI 182


>gi|189462223|ref|ZP_03011008.1| hypothetical protein BACCOP_02906 [Bacteroides coprocola DSM 17136]
 gi|189431076|gb|EDV00061.1| hypothetical protein BACCOP_02906 [Bacteroides coprocola DSM 17136]
          Length = 223

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 85/192 (44%), Positives = 131/192 (68%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  QI+D+ A  + AQLL+L++ +  K+IS+YI
Sbjct: 32  PYILEERQLNVTQLDVFSRLMMDRIIFLGTQIDDYTANTLQAQLLYLDSVDSGKDISIYI 91

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V AG+ IYDTMQFI   ++T C G AASM ++LL AG +G R AL ++R+++HQ
Sbjct: 92  NSPGGSVYAGLGIYDTMQFISSDVATICTGMAASMAAVLLVAGAEGKRSALTHSRVMIHQ 151

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I K+K+ L  I   +    +++V    DRD+ M+A EA ++G
Sbjct: 152 PMGGAQGQASDIEITAREIQKLKKELYTIISDHSHTEFDKVWADSDRDYWMTAQEAKEYG 211

Query: 200 VVDKVLMSRIDI 211
           ++D+VL  +  +
Sbjct: 212 MIDEVLSRKPAL 223


>gi|228476630|ref|ZP_04061312.1| Clp protease [Streptococcus salivarius SK126]
 gi|228251825|gb|EEK10890.1| Clp protease [Streptococcus salivarius SK126]
          Length = 196

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 94/192 (48%), Positives = 137/192 (71%), Gaps = 2/192 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  I AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K +  L +I   N G+  E+V    +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRNNLEQILADNSGQPIEKVHVDAERDNWMSAQET 180

Query: 196 CDWGVVDKVLMS 207
            ++G +D+++ +
Sbjct: 181 LEYGFIDEIMAN 192


>gi|255070963|ref|XP_002507563.1| endopeptidase clp chloroplast precursor [Micromonas sp. RCC299]
 gi|226522838|gb|ACO68821.1| endopeptidase clp chloroplast precursor [Micromonas sp. RCC299]
          Length = 270

 Score =  232 bits (591), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 86/186 (46%), Positives = 129/186 (69%), Gaps = 5/186 (2%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P+V  Q      + D +  LL+ERIVF+  Q++D  A  + +QLL L+A++P+K+I L+I
Sbjct: 56  PVVPRQ-----DAADPFGLLLRERIVFLGNQVDDFTADAVISQLLLLDAQDPKKDIKLFI 110

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VTAGM IYD MQ  +  +ST CMG AASMG+ LL++G +G R ++PNARI++HQ
Sbjct: 111 NSPGGSVTAGMGIYDAMQMCRADVSTVCMGLAASMGAFLLTSGARGKRLSMPNARIMIHQ 170

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG SGQA DIE  A++I+  K  LN +   + G+  +++++  DRD  MS  EA ++G
Sbjct: 171 PLGGASGQAVDIEIQAKEIMYHKANLNRLMAFHTGQDVKQIDEDTDRDRYMSPLEAKNYG 230

Query: 200 VVDKVL 205
           ++D+++
Sbjct: 231 IIDEII 236


>gi|312862980|ref|ZP_07723219.1| endopeptidase Clp [Streptococcus vestibularis F0396]
 gi|322517397|ref|ZP_08070271.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           vestibularis ATCC 49124]
 gi|311101475|gb|EFQ59679.1| endopeptidase Clp [Streptococcus vestibularis F0396]
 gi|322123995|gb|EFX95551.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           vestibularis ATCC 49124]
          Length = 196

 Score =  232 bits (591), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 94/192 (48%), Positives = 138/192 (71%), Gaps = 2/192 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  I AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K +  L +I   N G++ E+V    +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRNNLEQILADNSGQSIEKVHVDAERDNWMSAQET 180

Query: 196 CDWGVVDKVLMS 207
            ++G +D+++ +
Sbjct: 181 LEYGFIDEIMTN 192


>gi|255644732|gb|ACU22868.1| unknown [Glycine max]
          Length = 270

 Score =  232 bits (591), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 76/176 (43%), Positives = 121/176 (68%)

Query: 31  RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGM 90
              D  + LL++RI+F+  Q++D  A  I +QLLFL+AE+ +K+I L+INSPGG VTAGM
Sbjct: 77  EELDATNMLLRQRIIFLGSQVDDMTADFIISQLLFLDAEDSKKDIKLFINSPGGSVTAGM 136

Query: 91  AIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASD 150
            IYD M+  K  +ST C+G AASMG+ +L++G KG R+ +PN+R+++HQP G   G+A++
Sbjct: 137 GIYDAMKLCKADVSTVCLGLAASMGAFILASGTKGKRYCMPNSRVMIHQPLGTAGGKATE 196

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           +    +++   K ++N+I  +  GK  E++E   DRD+ M+  EA ++G+VD V+ 
Sbjct: 197 MSIRIREMAYHKIKINKILSRITGKPEEQIELDTDRDNFMNPWEAKEYGLVDGVID 252


>gi|157151545|ref|YP_001450909.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           gordonii str. Challis substr. CH1]
 gi|262283203|ref|ZP_06060970.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus sp.
           2_1_36FAA]
 gi|189082471|sp|A8AYP9|CLPP_STRGC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|157076339|gb|ABV11022.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           gordonii str. Challis substr. CH1]
 gi|262261455|gb|EEY80154.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus sp.
           2_1_36FAA]
          Length = 196

 Score =  232 bits (591), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 94/192 (48%), Positives = 138/192 (71%), Gaps = 2/192 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K ++ L +I   N GKT E++    +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRKTLEQILADNSGKTVEQIHADAERDYWMSAEET 180

Query: 196 CDWGVVDKVLMS 207
             +G +D+++ +
Sbjct: 181 LAYGFIDEIMAN 192


>gi|160916260|ref|ZP_02078467.1| hypothetical protein EUBDOL_02287 [Eubacterium dolichum DSM 3991]
 gi|158431984|gb|EDP10273.1| hypothetical protein EUBDOL_02287 [Eubacterium dolichum DSM 3991]
          Length = 204

 Score =  232 bits (591), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 92/200 (46%), Positives = 137/200 (68%), Gaps = 1/200 (0%)

Query: 8   KKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           +++ E ++L +VP ++E+   GE +YD+YS LLKERI+ + G+I+D M+  ICAQLL+L 
Sbjct: 2   EREKEVIYLVIVPTIIEKNINGEHAYDLYSCLLKERIIILCGEIDDAMSASICAQLLYL- 60

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           +   +  I LYINS GG VTAG+AIYD M +I   +ST CMG  ASM ++LL AG  G R
Sbjct: 61  STCSKAPIQLYINSNGGSVTAGLAIYDIMHYIPCEVSTICMGMCASMAAVLLCAGSNGKR 120

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           FAL N+ I++HQP GG  GQA D+E  AQ I ++K +L +I  K+  +  + + +  DRD
Sbjct: 121 FALANSEIMIHQPLGGMQGQAIDMEIAAQHIQQVKEKLYQILCKHTKQDKDIIIRDCDRD 180

Query: 188 HIMSASEACDWGVVDKVLMS 207
             M+A +A D+G+VD+++ +
Sbjct: 181 FYMNAKQALDYGMVDEIITN 200


>gi|298243372|ref|ZP_06967179.1| Endopeptidase Clp [Ktedonobacter racemifer DSM 44963]
 gi|297556426|gb|EFH90290.1| Endopeptidase Clp [Ktedonobacter racemifer DSM 44963]
          Length = 215

 Score =  232 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 96/203 (47%), Positives = 136/203 (66%), Gaps = 5/203 (2%)

Query: 10  DSEDVFLGL--VPMVV-EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
           D      GL  +P +  E     E SY I   LLK+RI+ +   I+D +A      LL+L
Sbjct: 13  DPRRQREGLRSIPSIRNEYRGGREGSYGIEDLLLKDRIILIGKPIDDMVAYQTIMLLLYL 72

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E E+  ++ISLY+NSPGG VTAG+AIYDTMQ+IKP +ST C+G A SM S+LL+ G KG 
Sbjct: 73  EHEDSSQDISLYLNSPGGSVTAGLAIYDTMQYIKPDVSTVCVGMAMSMASVLLAGGAKGK 132

Query: 127 RFALPNARILLHQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
           RF+LPN+ IL+HQP  SG  +GQASDIE  A++I++ +  LNE+  K+ G+  E + +  
Sbjct: 133 RFSLPNSTILIHQPLISGEIAGQASDIEIEAREIIRTRSELNELLAKHTGQPVERIAQDS 192

Query: 185 DRDHIMSASEACDWGVVDKVLMS 207
           DRD+ M+A +A ++G++D+VL S
Sbjct: 193 DRDNYMTAHQAVEYGLIDEVLES 215


>gi|300728339|ref|ZP_07061704.1| Clp protease [Prevotella bryantii B14]
 gi|299774404|gb|EFI71031.1| Clp protease [Prevotella bryantii B14]
          Length = 222

 Score =  232 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 85/190 (44%), Positives = 131/190 (68%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  +I+D+ A  + AQLL+L++ +  K+IS+YI
Sbjct: 33  PYILEERQLNVTQMDVFSRLMMDRIIFLGTEIDDYTANTLQAQLLYLDSVDSGKDISIYI 92

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VTAG+ IYDTMQFI   ++T C G AASM ++LL +G++G R AL ++R+++HQ
Sbjct: 93  NSPGGSVTAGLGIYDTMQFISSDVATICTGMAASMAAVLLVSGQEGKRSALTHSRVMIHQ 152

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I K K+ L  I   +    YE+V +  DR++ M+A EA ++G
Sbjct: 153 PLGGVQGQASDIEIEAKEIQKFKKELYTIISNHSHTPYEKVWQDSDRNYWMNAEEAKEYG 212

Query: 200 VVDKVLMSRI 209
           ++D VL  + 
Sbjct: 213 MIDTVLTRKK 222


>gi|326800322|ref|YP_004318141.1| ATP-dependent Clp protease proteolytic subunit [Sphingobacterium
           sp. 21]
 gi|326551086|gb|ADZ79471.1| ATP-dependent Clp protease proteolytic subunit [Sphingobacterium
           sp. 21]
          Length = 231

 Score =  232 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 86/203 (42%), Positives = 141/203 (69%)

Query: 8   KKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
            +  + + + L P ++E+        D++SRL+ +RI+F+   + D +A +I AQLLFL+
Sbjct: 28  NRVEQQMPVSLTPYIIEERQLNVAQMDVFSRLMMDRIIFLGDAVTDQVANIIQAQLLFLQ 87

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           + +  ++I +YINSPGG V AG+ IYDTMQ+I P ++T C G AASMG++LL AG KG R
Sbjct: 88  SADAHRDIQIYINSPGGSVYAGLGIYDTMQYISPDVATICTGMAASMGAVLLVAGAKGKR 147

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
            AL ++R+++HQPSGG  G A+D+E + ++++K+K+ L +I   + G++Y+ VEK  DRD
Sbjct: 148 AALKHSRVMIHQPSGGAQGVAADMEINLREMLKLKKELYQIIADHSGQSYDWVEKASDRD 207

Query: 188 HIMSASEACDWGVVDKVLMSRID 210
             M++ EA + G++D+VL+ + D
Sbjct: 208 FWMTSGEAKENGMIDEVLLGKKD 230


>gi|297153500|gb|ADI03212.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           bingchenggensis BCW-1]
          Length = 212

 Score =  232 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 92/200 (46%), Positives = 128/200 (64%), Gaps = 1/200 (0%)

Query: 17  GLVPMVVEQTNRGERSYD-IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
            L P   E      R  D + ++LL +RIV +  Q++D  A  +CAQLL L AE+P+ +I
Sbjct: 6   TLPPRAEEGDTPPSRFDDHLAAQLLAQRIVLLGTQVDDVSANRVCAQLLLLSAEDPRTDI 65

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG VTAG+AIYDTM+ I   +ST  MG AASMG  LL+ G  G RFALPNARI
Sbjct: 66  SLYINSPGGSVTAGLAIYDTMRLIPNDVSTLAMGFAASMGQFLLTVGTPGKRFALPNARI 125

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPS G  G A+DIE  A+++   K  +  I  ++ G++ E + +  DRD   +A +A
Sbjct: 126 MMHQPSAGIGGTAADIEIQAENLQFTKEAIERITAEHTGQSEETIARDGDRDRWFTAEQA 185

Query: 196 CDWGVVDKVLMSRIDIEEKS 215
            ++G+VD+V+ S  DI   +
Sbjct: 186 REYGIVDRVVESVADIRPAA 205


>gi|119716961|ref|YP_923926.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nocardioides
           sp. JS614]
 gi|119537622|gb|ABL82239.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nocardioides
           sp. JS614]
          Length = 200

 Score =  232 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 96/193 (49%), Positives = 138/193 (71%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVE+T RGER+ DIYSRLL +RIV+V  +I+D +A ++ AQLL LE++ P + ISLY
Sbjct: 6   IPSVVERTARGERAVDIYSRLLTDRIVYVGTEIDDGVANVVIAQLLHLESDAPDQPISLY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           +NSPGG VTA +AIYDTMQF++ P+ T C+GQAAS  ++LL+ GE G R  LP AR++LH
Sbjct: 66  LNSPGGSVTAMLAIYDTMQFVRSPVGTTCVGQAASSAAVLLAGGEPGSRTVLPRARVVLH 125

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  G   D+   A++IV+++  + EI  ++ G++  +V    DRD ++SA +A  +
Sbjct: 126 QPSGGGQGTLPDLALQAKEIVRLRTAMEEILAEHTGRSVAQVHADTDRDLVLSAEQAVAY 185

Query: 199 GVVDKVLMSRIDI 211
           G+ D VL SR  +
Sbjct: 186 GLADAVLDSRKKV 198


>gi|269795731|ref|YP_003315186.1| ATP-dependent Clp protease proteolytic subunit ClpP [Sanguibacter
           keddieii DSM 10542]
 gi|269097916|gb|ACZ22352.1| ATP-dependent Clp protease proteolytic subunit ClpP [Sanguibacter
           keddieii DSM 10542]
          Length = 207

 Score =  232 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 90/171 (52%), Positives = 127/171 (74%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IY+RLLKERI+++  ++ D  A  ICAQ++ L AE+P+K+I LYINSPGG +TAGMAIYD
Sbjct: 22  IYNRLLKERIIWLGSEVRDDNANAICAQMMLLAAEDPEKDIFLYINSPGGSITAGMAIYD 81

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQFI+P ++T  MG AASMG  LLS+G KG R+A P+AR+++HQPSGG  G A+D+  +
Sbjct: 82  TMQFIQPDVATVAMGMAASMGQFLLSSGTKGKRYATPHARVMMHQPSGGIGGTATDVRIN 141

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A+ I+ +KR L E+  +  GK+ E++    DRD   +A EA ++G +DKV+
Sbjct: 142 AELILHMKRVLAELIAEQTGKSTEQIHTDSDRDRWFTAPEALEYGFIDKVV 192


>gi|288920828|ref|ZP_06415126.1| Endopeptidase Clp [Frankia sp. EUN1f]
 gi|288347787|gb|EFC82066.1| Endopeptidase Clp [Frankia sp. EUN1f]
          Length = 214

 Score =  232 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 96/192 (50%), Positives = 143/192 (74%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P ++E+T+RGE   D YS+LLKERIVF+   I+D  A  + AQLLFLE+E+P ++IS+
Sbjct: 15  VLPNIIEKTSRGEYGMDPYSKLLKERIVFLGAPIDDTSANDVMAQLLFLESEDPDRDISI 74

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+  AIYDTMQF++P I T CMGQAAS  ++LL+AG  G RFAL N+RIL+
Sbjct: 75  YINSPGGSFTSLTAIYDTMQFVRPDIQTICMGQAASAAAVLLAAGTPGKRFALQNSRILI 134

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPS    GQ+SDIE  A++I++++  L  +  ++ G+  E++ K ++RD I+S+ EA +
Sbjct: 135 HQPSAQGEGQSSDIEIQAREILRMRTLLERMLAEHTGRNEEDIRKDIERDKILSSEEAKE 194

Query: 198 WGVVDKVLMSRI 209
           +G++D+V+ +R 
Sbjct: 195 YGLIDEVIKTRK 206


>gi|290960370|ref|YP_003491552.1| ATP dependent Clp protease proteolytic subunit 1 [Streptomyces
           scabiei 87.22]
 gi|260649896|emb|CBG73012.1| ATP dependent Clp protease proteolytic subunit 1 [Streptomyces
           scabiei 87.22]
          Length = 207

 Score =  232 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 97/192 (50%), Positives = 131/192 (68%), Gaps = 2/192 (1%)

Query: 17  GLVPMVVEQTNRGERSYD-IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
            L+P    + + G    D +Y+RLL ERI+F+   ++D +A  I AQLL L A+ P K+I
Sbjct: 3   NLMPSAAGEPSIGGGLGDQVYNRLLNERIIFLGQPVDDDIANKITAQLLLLAAD-PDKDI 61

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +TAGMAIYDTMQFIK  + T  MG AASMG  LLSAG  G RFALPNA I
Sbjct: 62  YLYINSPGGSITAGMAIYDTMQFIKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEI 121

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQPS G +G ASDI+ HA+ ++  K+R+ E+  ++ G+T E+V +  DRD    A EA
Sbjct: 122 LIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSQHTGQTVEQVTRDSDRDRWFDAFEA 181

Query: 196 CDWGVVDKVLMS 207
            ++G++D V+ +
Sbjct: 182 KEYGLIDDVIPT 193


>gi|149275732|ref|ZP_01881877.1| ATP-dependent Clp protease proteolytic subunit 2 [Pedobacter sp.
           BAL39]
 gi|149233160|gb|EDM38534.1| ATP-dependent Clp protease proteolytic subunit 2 [Pedobacter sp.
           BAL39]
          Length = 233

 Score =  231 bits (590), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 90/189 (47%), Positives = 135/189 (71%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            + P ++E+        D++SRL+ +RI+F+   I D  A +I AQLLFL++ + Q++I 
Sbjct: 36  SMTPYIIEERQLNVAQMDVFSRLMMDRIIFLGDAIYDGNANIIQAQLLFLQSTDNQRDIQ 95

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG V AG+ IYDTMQ+I P ++T C G AASMG++LL AG KG R ALP++R++
Sbjct: 96  IYINSPGGSVYAGLGIYDTMQYISPDVATICTGMAASMGAVLLVAGAKGKRAALPHSRVM 155

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  G ASD+E + ++++K+K+ L +I   + G++YE VEK  DRD+ M A EA 
Sbjct: 156 IHQPSGGAQGVASDMEINLREMLKLKKELYDIISNHSGQSYEWVEKASDRDYWMKADEAK 215

Query: 197 DWGVVDKVL 205
            +G++D+VL
Sbjct: 216 SFGMIDEVL 224


>gi|311896032|dbj|BAJ28440.1| putative ATP-dependent Clp protease proteolytic subunit
           [Kitasatospora setae KM-6054]
          Length = 216

 Score =  231 bits (590), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 90/212 (42%), Positives = 134/212 (63%), Gaps = 7/212 (3%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           M+F              + P        G     +Y+RLL ERI+F+  Q++D +A  I 
Sbjct: 1   MTFPQMQMPGP------MAPHAAGGDVGGGLGDQVYNRLLNERIIFLGQQVDDDIANKIT 54

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLL L A+ P+K+I LYINSPGG ++AGMAIYDTMQ+IK  + T  MG AASMG  LL+
Sbjct: 55  AQLLLLAAD-PEKDIYLYINSPGGSISAGMAIYDTMQYIKNDVVTIAMGMAASMGQFLLT 113

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG RF+LPNA IL+HQPS G  G A+DI   A+ +++ K+R++E+  ++ G++++++
Sbjct: 114 AGAKGKRFSLPNANILMHQPSAGLGGSATDIRIQAEQLLRTKKRMSELIAQHSGQSFDQI 173

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
               DRD   +  EA  +G++D+++ S  D+ 
Sbjct: 174 TADSDRDRWFTPEEAKAYGLIDEIMHSAADVP 205


>gi|312200165|ref|YP_004020226.1| endopeptidase Clp [Frankia sp. EuI1c]
 gi|311231501|gb|ADP84356.1| Endopeptidase Clp [Frankia sp. EuI1c]
          Length = 200

 Score =  231 bits (590), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 87/181 (48%), Positives = 127/181 (70%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           ++ RLL+ERI+F+   ++D +A  +CAQLL L AE+P+++I LYINSPGGVVTAGMAIYD
Sbjct: 14  VFQRLLRERIIFLGSAVDDEVANRVCAQLLLLGAEDPRRDIFLYINSPGGVVTAGMAIYD 73

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ++   ++T  +G +ASMG  LL AG  G R+ALP+ARI++HQPSGG  G ASDI   
Sbjct: 74  TMQYLDNDVATVALGLSASMGQFLLCAGTPGKRYALPHARIMMHQPSGGIGGTASDIAIQ 133

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
            +  +  KR + E    + G+T E++++  DRD   +A EA D+G++D+V+ S   +  +
Sbjct: 134 VEQTLHTKRVIQERTAFHTGQTVEQIDRDSDRDRWFTADEARDYGLIDEVVASARAVPAE 193

Query: 215 S 215
           S
Sbjct: 194 S 194


>gi|331695807|ref|YP_004332046.1| ATP-dependent Clp protease proteolytic subunit [Pseudonocardia
           dioxanivorans CB1190]
 gi|326950496|gb|AEA24193.1| ATP-dependent Clp protease proteolytic subunit [Pseudonocardia
           dioxanivorans CB1190]
          Length = 219

 Score =  231 bits (590), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 86/184 (46%), Positives = 123/184 (66%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           S  +Y RLL++RI+ +  Q++D +A  I AQ+L L AE+P  +I+LYINSPGG VTAGMA
Sbjct: 28  SDSVYERLLQQRIIVLGQQVDDDIANRIAAQMLLLSAEDPTADIALYINSPGGSVTAGMA 87

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           I+DTM+FI+  ++T+ MG AASMG  LLSAG +G R+ALP+ +IL+HQPS G  G  SDI
Sbjct: 88  IFDTMEFIECDVATYAMGLAASMGQFLLSAGTRGKRYALPHCQILMHQPSAGVGGTESDI 147

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
              A+   + KR + E+   + G+T E++    DRD   SA EA ++G VD V+     +
Sbjct: 148 AIQAELFRRHKREMAELIAGHTGQTVEKITADFDRDRWFSAQEALEYGFVDHVISRAGQL 207

Query: 212 EEKS 215
            + +
Sbjct: 208 PDAA 211


>gi|311743055|ref|ZP_07716863.1| ATP-dependent Clp protease proteolytic subunit [Aeromicrobium
           marinum DSM 15272]
 gi|311313735|gb|EFQ83644.1| ATP-dependent Clp protease proteolytic subunit [Aeromicrobium
           marinum DSM 15272]
          Length = 192

 Score =  231 bits (590), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 96/185 (51%), Positives = 130/185 (70%), Gaps = 2/185 (1%)

Query: 29  GERSYD--IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVV 86
           G+   D  IY RLLKERIVF+  ++ +  A  ICAQ+L L AE+P  +ISLYINSPGG V
Sbjct: 6   GQLDLDGHIYQRLLKERIVFLGSEVRNDNANAICAQMLLLSAEDPTSDISLYINSPGGSV 65

Query: 87  TAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG 146
            AGMAIYDTMQFI   ++TF MG AASMG  LL+AG KG R+ALP+ARI++HQPSGG  G
Sbjct: 66  DAGMAIYDTMQFISNDVATFGMGLAASMGQFLLAAGTKGKRYALPHARIMMHQPSGGIGG 125

Query: 147 QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
            ASDI+  A+  + +K++LNE+   + G+T E+VE   DRD   +  +A ++G +D V+ 
Sbjct: 126 SASDIKIQAEQSILLKKQLNELQSLHTGQTLEQVEIDADRDRWFTPQQALEYGFIDHVVA 185

Query: 207 SRIDI 211
           +  ++
Sbjct: 186 TAGEV 190


>gi|311743054|ref|ZP_07716862.1| ATP-dependent Clp protease proteolytic subunit [Aeromicrobium
           marinum DSM 15272]
 gi|311313734|gb|EFQ83643.1| ATP-dependent Clp protease proteolytic subunit [Aeromicrobium
           marinum DSM 15272]
          Length = 200

 Score =  231 bits (590), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 85/190 (44%), Positives = 132/190 (69%), Gaps = 1/190 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P   E+T+ G R  D Y++L ++RI+F+   I D +A  + AQLL L+   P ++IS+Y
Sbjct: 5   IPQWEERTSYGFRRIDPYAKLFEDRIIFLGTPISDDVANAVIAQLLCLQVMEPDRDISIY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TA  AIYDTM+++KP + TFC+GQAAS  ++LL AG  G RFALPNARIL+H
Sbjct: 65  INSPGGSFTAMTAIYDTMRYLKPDVQTFCLGQAASAAAVLLGAGTPGKRFALPNARILIH 124

Query: 139 QPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP      GQ SD+E  A +I++++  + ++   + G++ E+V + +DRD I++A +A +
Sbjct: 125 QPYTEGTGGQISDLEIQANEIMRMRSLMEQMISTSTGRSPEDVSRDVDRDKILTAQQALE 184

Query: 198 WGVVDKVLMS 207
           +G++D+VL +
Sbjct: 185 YGLIDQVLDT 194


>gi|86741462|ref|YP_481862.1| ATP-dependent Clp protease proteolytic subunit [Frankia sp. CcI3]
 gi|86568324|gb|ABD12133.1| ATP-dependent Clp protease proteolytic subunit ClpP / ClpP2
           peptidase. Serine peptidase. MEROPS family S14 [Frankia
           sp. CcI3]
          Length = 224

 Score =  231 bits (590), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 102/192 (53%), Positives = 144/192 (75%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P +VE+T+RGE S D YS+LLKERIVF+  QI+D  A  + AQLLFLE+E+P ++IS+
Sbjct: 23  VLPNIVERTSRGEYSMDPYSKLLKERIVFLGVQIDDVSANDVMAQLLFLESEDPDRDISI 82

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+  AIYDTMQF++P IST CMGQAAS  ++LL+AG  G RFAL N+RIL+
Sbjct: 83  YINSPGGSFTSLTAIYDTMQFVRPDISTICMGQAASAAAVLLAAGTPGKRFALENSRILI 142

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPS    GQ+SDIE  A++I++++     +  ++ G+T  E+ +  +RD I SA EA +
Sbjct: 143 HQPSAQGEGQSSDIEIQAREILRVRALQETMLARHTGRTETEIRRDTERDKIFSADEAEE 202

Query: 198 WGVVDKVLMSRI 209
           +G++D+V+MSR 
Sbjct: 203 YGLIDEVIMSRK 214


>gi|313204335|ref|YP_004042992.1| ATP-dependent clp protease proteolytic subunit clpp [Paludibacter
           propionicigenes WB4]
 gi|312443651|gb|ADQ80007.1| ATP-dependent Clp protease proteolytic subunit ClpP [Paludibacter
           propionicigenes WB4]
          Length = 223

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 86/191 (45%), Positives = 135/191 (70%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  Q++D+ A +I AQLL+L++ +P K+IS+Y+
Sbjct: 32  PSILEERQLNVTQMDVFSRLMMDRIIFLGTQVDDYTANVIQAQLLYLDSADPGKDISIYL 91

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           N+PGG V AG+ IYDTMQFI   ++T C G AASMG++LL AG +G R AL ++R+++HQ
Sbjct: 92  NTPGGSVYAGLGIYDTMQFISSDVATICTGMAASMGAVLLVAGAQGKRSALKHSRVMIHQ 151

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I K+K+ L  I   +    ++ +EK  DRD+ M+++EA ++G
Sbjct: 152 PMGGAQGQASDIEITAREIQKLKKELYTIIADHSNNPFDRIEKDSDRDYWMTSTEALEYG 211

Query: 200 VVDKVLMSRID 210
           ++DKVL +   
Sbjct: 212 MIDKVLFNEKK 222


>gi|70699878|gb|AAZ06847.1| ClpP1 [Microbacterium arborescens]
          Length = 194

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 93/177 (52%), Positives = 123/177 (69%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           ++ RLLK+RI+++  ++ D  A  ICA++L L AE+ +K+I LYINSPGG +TAGMAIYD
Sbjct: 10  VFDRLLKDRIIWLGSEVRDENANEICAKILLLAAEDSEKDIYLYINSPGGSITAGMAIYD 69

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQF+   I T  +G AASMG LLL+AG KG R+  PNAR+LLHQP GGF G ASDI+  
Sbjct: 70  TMQFVPNDIVTVGIGMAASMGQLLLTAGTKGKRYITPNARVLLHQPHGGFGGTASDIQTQ 129

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           AQ I+ +KRRL EI     GK+ E++    DRD   +A EA ++G VD +  S  D+
Sbjct: 130 AQLILDMKRRLAEITAAQTGKSVEQINADGDRDRWFTAQEALEYGFVDHIRESATDV 186


>gi|152968201|ref|YP_001363985.1| ATP-dependent Clp protease proteolytic subunit [Kineococcus
           radiotolerans SRS30216]
 gi|151362718|gb|ABS05721.1| Endopeptidase Clp [Kineococcus radiotolerans SRS30216]
          Length = 240

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 85/192 (44%), Positives = 121/192 (63%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           PM    T  G     +  RLL +RIV +  +++D +A  ICAQLL L A++P+ +I+LY+
Sbjct: 35  PMSTPTTTTGPFDDQLSQRLLFQRIVVLGQEVDDAVANRICAQLLLLSADDPRSDIALYV 94

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG ++AG+AIYDTM+ I   +ST  MG AASMG  LL AG  G R+ALP+AR+++HQ
Sbjct: 95  NSPGGSISAGLAIYDTMRLIPNDVSTLVMGMAASMGQFLLCAGTAGKRYALPHARVMMHQ 154

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           PSGG  G A+DI   A+++   K  +  +  ++ G+  E VE    RD   +A EA  +G
Sbjct: 155 PSGGIGGTAADIAIQAENLAHTKATMQRLIAEHTGQDVETVELDSQRDRWFTAEEALAYG 214

Query: 200 VVDKVLMSRIDI 211
           VVD V+    D+
Sbjct: 215 VVDHVVTGVSDV 226


>gi|22537725|ref|NP_688576.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           agalactiae 2603V/R]
 gi|25011674|ref|NP_736069.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           agalactiae NEM316]
 gi|76787269|ref|YP_330203.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           agalactiae A909]
 gi|76799155|ref|ZP_00781338.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           agalactiae 18RS21]
 gi|77407096|ref|ZP_00784096.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           agalactiae H36B]
 gi|77411373|ref|ZP_00787720.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           agalactiae CJB111]
 gi|60389783|sp|Q8DYA5|CLPP_STRA5 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|60389787|sp|Q8E3X0|CLPP_STRA3 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|109878422|sp|Q3JZV0|CLPP_STRA1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|22534615|gb|AAN00449.1|AE014264_4 ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           agalactiae 2603V/R]
 gi|22091680|emb|CAC88188.1| ClpP serine protease [Streptococcus agalactiae]
 gi|24413214|emb|CAD47293.1| ATP-dependent CLP protease proteolytic subunit [Streptococcus
           agalactiae NEM316]
 gi|76562326|gb|ABA44910.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           agalactiae A909]
 gi|76585485|gb|EAO62060.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           agalactiae 18RS21]
 gi|77162546|gb|EAO73510.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           agalactiae CJB111]
 gi|77174291|gb|EAO77160.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           agalactiae H36B]
          Length = 196

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 97/192 (50%), Positives = 137/192 (71%), Gaps = 2/192 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TGQ+ED+MA  I AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGQVEDNMANSIIAQLLFLDAQDNTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q SD+   A+ ++K +  L +I   N G++ E+V    +RD  MSA E 
Sbjct: 121 HQPMGGTGGGTQQSDMAIAAEHLLKTRHTLEKILADNSGQSIEKVHDDAERDRWMSAQET 180

Query: 196 CDWGVVDKVLMS 207
            D+G +D ++ +
Sbjct: 181 LDYGFIDAIMEN 192


>gi|312885607|ref|ZP_07745243.1| Endopeptidase Clp [Mucilaginibacter paludis DSM 18603]
 gi|311301919|gb|EFQ78952.1| Endopeptidase Clp [Mucilaginibacter paludis DSM 18603]
          Length = 232

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 89/200 (44%), Positives = 134/200 (67%)

Query: 6   CAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF 65
            ++ +S  +   + P ++E+        D++SRL+ +RI+F+   I D  A +I AQLLF
Sbjct: 27  ISRVESSRIPTSMTPYIIEERQLNVAQMDVFSRLMMDRIIFLGDAIYDTNANIIQAQLLF 86

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L++ + +++I +YINSPGG V AG+ IYDTMQFI   ++T C G AASMG++LL AG  G
Sbjct: 87  LQSADAKRDIQIYINSPGGSVYAGLGIYDTMQFISNDVATICTGMAASMGAVLLCAGTAG 146

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
            R ALP++R+++HQPSGG  GQ SDIE    +I K+K+ L +I   + G +YE+V    D
Sbjct: 147 KRAALPHSRVMIHQPSGGAQGQQSDIEITYHEITKLKKELYQIIADHSGASYEKVWDASD 206

Query: 186 RDHIMSASEACDWGVVDKVL 205
           RD+ M A EA ++G+VD++L
Sbjct: 207 RDYWMIAEEAKEFGMVDEIL 226


>gi|284990114|ref|YP_003408668.1| endopeptidase Clp [Geodermatophilus obscurus DSM 43160]
 gi|284063359|gb|ADB74297.1| Endopeptidase Clp [Geodermatophilus obscurus DSM 43160]
          Length = 208

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 93/209 (44%), Positives = 144/209 (68%), Gaps = 7/209 (3%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MSFE  + +        ++P  VE+T+ G +  + Y++L +ERI+F+  QI+D  A  + 
Sbjct: 1   MSFEMPSSRY-------ILPSFVERTSYGMKESNPYNKLFEERIIFLGVQIDDASANDVM 53

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQL+ LE+ +P ++I++YINSPGG  T+ MAIYDTM F++P I T CMGQAAS  ++LL+
Sbjct: 54  AQLITLESADPDRDITIYINSPGGSFTSLMAIYDTMMFVRPDIQTVCMGQAASAAAVLLA 113

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG  G R ALP +R+L+HQPSG   GQ SD+E HA +I +++ ++ EI  ++ G++ ++V
Sbjct: 114 AGTPGKRLALPYSRVLIHQPSGEAGGQVSDLEIHAAEIQRVRAQMEEILARHTGRSVDQV 173

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRI 209
              +DRD I++A EA ++G+VD V+ SR 
Sbjct: 174 RADIDRDKILTAEEAKEYGIVDAVIQSRK 202


>gi|226307301|ref|YP_002767261.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rhodococcus
           erythropolis PR4]
 gi|229493206|ref|ZP_04386998.1| Clp protease [Rhodococcus erythropolis SK121]
 gi|226186418|dbj|BAH34522.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rhodococcus
           erythropolis PR4]
 gi|229319937|gb|EEN85766.1| Clp protease [Rhodococcus erythropolis SK121]
          Length = 220

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 92/209 (44%), Positives = 139/209 (66%), Gaps = 3/209 (1%)

Query: 2   SFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICA 61
           S  G A    +  +  ++P   EQT+ G ++ D Y++L +ERI+F+  Q++D  A  + A
Sbjct: 9   SLGGQAPSGPQSRY--ILPQFTEQTSYGVKTSDPYNKLFEERIIFLGSQVDDVSANDLMA 66

Query: 62  QLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSA 121
           QLL LE+++P ++I++YINSPGG  TA MAIYDTMQ+++  IST C+GQAAS  ++LL+ 
Sbjct: 67  QLLVLESQDPDRDITMYINSPGGSFTALMAIYDTMQYVRADISTVCLGQAASAAAVLLAG 126

Query: 122 GEKGMRFALPNARILLHQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           G  G RFALPN+RIL+HQP+ GG  GQ SD+E  A +I +++R +      + GK  E +
Sbjct: 127 GTPGKRFALPNSRILIHQPATGGIQGQVSDLEIQAAEIERMRRLMESTLSLHTGKDPETI 186

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRI 209
               DRD I++A +A ++G++D VL  R 
Sbjct: 187 RVDTDRDKILTAEQAKEYGIIDDVLAYRK 215


>gi|15674537|ref|NP_268711.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes M1 GAS]
 gi|19745547|ref|NP_606683.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes MGAS8232]
 gi|21909823|ref|NP_664091.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes MGAS315]
 gi|28896484|ref|NP_802834.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes SSI-1]
 gi|50913700|ref|YP_059672.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes MGAS10394]
 gi|71910142|ref|YP_281692.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes MGAS5005]
 gi|94987959|ref|YP_596060.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes MGAS9429]
 gi|94989833|ref|YP_597933.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes MGAS10270]
 gi|94991844|ref|YP_599943.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes MGAS2096]
 gi|94993720|ref|YP_601818.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes MGAS10750]
 gi|139474337|ref|YP_001129053.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes str. Manfredo]
 gi|209558883|ref|YP_002285355.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes NZ131]
 gi|251781853|ref|YP_002996155.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|306827931|ref|ZP_07461198.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes ATCC 10782]
 gi|56748646|sp|Q5XDM4|CLPP_STRP6 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|56749808|sp|P69884|CLPP_STRP1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|56749809|sp|P69885|CLPP_STRP3 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|56749810|sp|P69886|CLPP_STRP8 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|116243170|sp|Q1JDA9|CLPP_STRPB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|116243171|sp|Q1JN83|CLPP_STRPC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|116243172|sp|Q1JID4|CLPP_STRPD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|116243173|sp|Q1J887|CLPP_STRPF RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|166214714|sp|A2RG72|CLPP_STRPG RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|226706550|sp|B5XJZ8|CLPP_STRPZ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|13621642|gb|AAK33432.1| putative ATP-dependent protease proteolytic subunit [Streptococcus
           pyogenes M1 GAS]
 gi|19747668|gb|AAL97182.1| putative ATP-dependent protease proteolytic subunit [Streptococcus
           pyogenes MGAS8232]
 gi|21904009|gb|AAM78894.1| putative ATP-dependent Clp protease proteolytic subunit
           [Streptococcus pyogenes MGAS315]
 gi|28811738|dbj|BAC64667.1| putative ATP-dependent protease proteolytic subunit [Streptococcus
           pyogenes SSI-1]
 gi|50902774|gb|AAT86489.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes MGAS10394]
 gi|71852924|gb|AAZ50947.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes MGAS5005]
 gi|94541467|gb|ABF31516.1| ATP-dependent endopeptidase clp proteolytic subunit [Streptococcus
           pyogenes MGAS9429]
 gi|94543341|gb|ABF33389.1| ATP-dependent endopeptidase clp proteolytic subunit clpP
           [Streptococcus pyogenes MGAS10270]
 gi|94545352|gb|ABF35399.1| ATP-dependent endopeptidase clp proteolytic subunit clpP
           [Streptococcus pyogenes MGAS2096]
 gi|94547228|gb|ABF37274.1| ATP-dependent endopeptidase clp proteolytic subunit clpP
           [Streptococcus pyogenes MGAS10750]
 gi|134272584|emb|CAM30851.1| putative ATP-dependent Clp protease proteolytic subunit
           [Streptococcus pyogenes str. Manfredo]
 gi|209540084|gb|ACI60660.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes NZ131]
 gi|242390482|dbj|BAH80941.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|304429850|gb|EFM32892.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes ATCC 10782]
 gi|322411198|gb|EFY02106.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
 gi|323126667|gb|ADX23964.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 196

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 95/192 (49%), Positives = 140/192 (72%), Gaps = 2/192 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDNTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGTKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K + RL +I  +N GKT +++ K  +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRHRLEKILAQNAGKTIKQIHKDAERDYWMSAEET 180

Query: 196 CDWGVVDKVLMS 207
             +G +D+++ +
Sbjct: 181 LAYGFIDEIMEN 192


>gi|323343310|ref|ZP_08083537.1| ATP-dependent Clp protease, protease subunit [Prevotella oralis
           ATCC 33269]
 gi|323095129|gb|EFZ37703.1| ATP-dependent Clp protease, protease subunit [Prevotella oralis
           ATCC 33269]
          Length = 222

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 86/190 (45%), Positives = 129/190 (67%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  +I+D+ A  + AQLL+L++ +  K+IS+YI
Sbjct: 33  PYILEERQLNVTQMDVFSRLMMDRIIFLGTEIDDYTANTLQAQLLYLDSADSGKDISIYI 92

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VTAG+ IYDTMQFI   ++T C G AASM ++LL AG  G R AL ++R+++HQ
Sbjct: 93  NSPGGSVTAGLGIYDTMQFISSDVATICTGMAASMAAVLLVAGTDGKRNALTHSRVMIHQ 152

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I K K+ L  I   +    YE+V +  DR++ M+A EA ++G
Sbjct: 153 PLGGVQGQASDIEIEAKEIQKFKKELYTIIANHSHTPYEKVWQDADRNYWMTAEEAKEYG 212

Query: 200 VVDKVLMSRI 209
           ++D VL  + 
Sbjct: 213 MIDAVLTRKK 222


>gi|111221349|ref|YP_712143.1| ATP-dependent Clp protease proteolytic subunit [Frankia alni
           ACN14a]
 gi|111148881|emb|CAJ60560.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
           [Frankia alni ACN14a]
          Length = 226

 Score =  231 bits (589), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 99/192 (51%), Positives = 143/192 (74%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P ++E+T+RGE   D YS+LLKERIVF+  QI+D  A  + AQLLFLE+E+P ++IS+
Sbjct: 27  VLPNIIEKTSRGEYGMDPYSKLLKERIVFLGVQIDDVSANDVMAQLLFLESEDPDRDISI 86

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+  AIYDTMQF++P IST CMGQAAS  ++LL+AG  G RFAL N+RIL+
Sbjct: 87  YINSPGGSFTSLTAIYDTMQFVRPDISTICMGQAASAAAVLLAAGTPGKRFALENSRILI 146

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPS    GQ+SDIE  A++I++++  L  +   + G+  E++ K ++RD I SA EA +
Sbjct: 147 HQPSAQGEGQSSDIEIQAREILRMRSLLERMLATHTGRKEEDIRKDIERDKIFSADEAKE 206

Query: 198 WGVVDKVLMSRI 209
           +G++D+V+ +R 
Sbjct: 207 YGLIDEVIKTRK 218


>gi|108935916|sp|Q2JDQ8|CLPP2_FRASC RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
          Length = 217

 Score =  231 bits (589), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 100/192 (52%), Positives = 143/192 (74%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P ++E+T+RGE   D YS+LLKERIVF+  QI+D  A  + AQLLFLE+E+P ++IS+
Sbjct: 18  VLPNIIEKTSRGEYGMDPYSKLLKERIVFLGVQIDDVSANDVMAQLLFLESEDPDRDISI 77

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+  AIYDTMQF++P IST CMGQAAS  ++LL+AG  G RFAL N+RIL+
Sbjct: 78  YINSPGGSFTSLTAIYDTMQFVRPDISTICMGQAASAAAVLLAAGTPGKRFALENSRILI 137

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPS    GQ+SDIE  A++I++++  L  +   + GK  E++ K ++RD I SA EA +
Sbjct: 138 HQPSAQGEGQSSDIEIQAREILRMRSLLERMLAVHTGKKEEDIRKDIERDKIFSADEAKE 197

Query: 198 WGVVDKVLMSRI 209
           +G++D+V+ +R 
Sbjct: 198 YGLIDEVIKTRK 209


>gi|323149170|ref|YP_004221999.1| ATP-dependent Clp protease proteolytic subunit [Coccomyxa sp.
           C-169]
 gi|317467226|gb|ADV29847.1| ATP-dependent Clp protease proteolytic subunit [Coccomyxa sp.
           C-169]
          Length = 195

 Score =  231 bits (589), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 75/188 (39%), Positives = 128/188 (68%), Gaps = 2/188 (1%)

Query: 19  VPMVVEQTNR--GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +       +  D+Y+RL +ER++F+  +++D +A  +   +L+L AE   K + 
Sbjct: 5   VPKVPFRLPGEPTAQWVDLYNRLYRERVLFLCQELDDELANQLIGIMLYLNAEEKSKGLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VT G+A+YD+M ++K  ++T C+G AASM S +L+ G++G R ALP++RI+
Sbjct: 65  IYINSPGGSVTCGIAVYDSMNYVKADVTTICVGTAASMASFVLAGGDRGKRIALPHSRIM 124

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQAS++   + ++++I+R++ +IY +  G+    + + +DRD  MSA EA 
Sbjct: 125 IHQPEGGSQGQASEVLSESSEVMRIRRQVGKIYAERTGQPLSRISRDMDRDQFMSAREAK 184

Query: 197 DWGVVDKV 204
           ++G+VD+V
Sbjct: 185 EYGLVDQV 192


>gi|257068141|ref|YP_003154396.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Brachybacterium faecium DSM 4810]
 gi|256558959|gb|ACU84806.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Brachybacterium faecium DSM 4810]
          Length = 210

 Score =  231 bits (589), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 92/205 (44%), Positives = 131/205 (63%), Gaps = 9/205 (4%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS +        +   G  PM ++ +        +Y RLL+ERIV++  ++ D  A  IC
Sbjct: 1   MSSQSTQTSPPRNA-AGDTPMGLDDS--------VYQRLLRERIVWLGSEVRDENANAIC 51

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           ++LL L AE+P K+I LYINSPGG +TAGMAIYDTMQF+KP + T  MG AASMG  LLS
Sbjct: 52  SKLLLLAAEDPDKDIYLYINSPGGSITAGMAIYDTMQFVKPDVVTVGMGMAASMGQFLLS 111

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           +G KG R+A P+ R+L+HQP GG  G A+DI+  A  I+ +KR L E+  +   K+ E++
Sbjct: 112 SGTKGKRYATPHTRVLMHQPLGGLGGTATDIKIQADLILSMKRTLAELIAEQTDKSVEQI 171

Query: 181 EKTLDRDHIMSASEACDWGVVDKVL 205
               DRD   +A+EA ++G +DK++
Sbjct: 172 TADSDRDKWFTATEALEYGFIDKIV 196


>gi|108773366|ref|YP_635828.1| ATP-dependent Clp protease proteolytic subunit [Oltmannsiellopsis
           viridis]
 gi|122195154|sp|Q20F17|CLPP_OLTVI RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|82541948|gb|ABB81989.1| proteolytic subunit 2 of clp protease [Oltmannsiellopsis viridis]
          Length = 195

 Score =  231 bits (589), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 79/191 (41%), Positives = 129/191 (67%), Gaps = 2/191 (1%)

Query: 19  VPMVVEQTNRGE--RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +       +  D+Y+RL +ER++F+   ++D +A  +   +L+L AE   K++ 
Sbjct: 5   VPKVPFRLPGEPSAQWVDLYNRLYRERVLFLCQDLDDELANQLIGIMLYLNAEEKSKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VT G+A+YDTM +IK  ++T C+G AASM S +L+ G +G R ALP++RI+
Sbjct: 65  IYINSPGGSVTCGIAVYDTMNYIKADVTTICVGTAASMASFVLAGGTQGKRIALPHSRIM 124

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQAS++   ++++++I+R++ +IY +  G+    + + LDRD  +SA EA 
Sbjct: 125 IHQPEGGSRGQASEVLSESEEVMRIRRQVGKIYAQRTGQPLRRISRDLDRDQFLSAREAK 184

Query: 197 DWGVVDKVLMS 207
           D+G+VD+V  S
Sbjct: 185 DYGIVDQVATS 195


>gi|332140445|ref|YP_004426183.1| Protease subunit of ATP-dependent Clp protease [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327550467|gb|AEA97185.1| Protease subunit of ATP-dependent Clp protease [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 153

 Score =  231 bits (589), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 93/149 (62%), Positives = 122/149 (81%)

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           +LFLEAENP+K+I LYINSPGG VTAGMAIYDTM+FIKP +ST CMGQAASMG+ LLSAG
Sbjct: 1   MLFLEAENPEKDIFLYINSPGGSVTAGMAIYDTMRFIKPDVSTVCMGQAASMGAFLLSAG 60

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
            KG R+ LPN+R+++HQP GGF GQASD E HA++I+ IK +LN +   + G+ YE+V +
Sbjct: 61  AKGKRYCLPNSRVMIHQPLGGFQGQASDFEIHAKEILSIKEKLNRLLADHTGQDYEKVAR 120

Query: 183 TLDRDHIMSASEACDWGVVDKVLMSRIDI 211
             DRD+ +SA+EA ++G+VD+VL +R D+
Sbjct: 121 DTDRDNFLSATEAKEYGLVDQVLANRSDV 149


>gi|304383401|ref|ZP_07365867.1| ATP-dependent Clp protease proteolytic subunit [Prevotella marshii
           DSM 16973]
 gi|304335569|gb|EFM01833.1| ATP-dependent Clp protease proteolytic subunit [Prevotella marshii
           DSM 16973]
          Length = 224

 Score =  231 bits (589), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 85/189 (44%), Positives = 132/189 (69%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  +I+D+ A  + AQLL+L++ +  K+IS+YI
Sbjct: 35  PYILEERQLNVTQLDVFSRLMMDRIIFLGTEIDDYTANTLQAQLLYLDSVDSGKDISIYI 94

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VTAG+ IYDTMQFI   ++T C G AASM ++LL AG++G R AL ++R+++HQ
Sbjct: 95  NSPGGSVTAGLGIYDTMQFITSDVATICTGMAASMAAVLLVAGQEGKRSALTHSRVMIHQ 154

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I K K+ L  I  ++    +E+V +  DR++ M+A EA ++G
Sbjct: 155 PLGGVQGQASDIEIEAKEIQKFKKELYTIISEHSHTPFEKVWQDSDRNYWMNAEEAKEYG 214

Query: 200 VVDKVLMSR 208
           ++D VL  +
Sbjct: 215 MIDAVLKRK 223


>gi|225867968|ref|YP_002743916.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus equi
           subsp. zooepidemicus]
 gi|225871117|ref|YP_002747064.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus equi
           subsp. equi 4047]
 gi|254763801|sp|C0M7M8|CLPP_STRE4 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|259585965|sp|C0MGT5|CLPP_STRS7 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|225700521|emb|CAW94984.1| putative ATP-dependent Clp protease proteolytic subunit
           [Streptococcus equi subsp. equi 4047]
 gi|225701244|emb|CAW98203.1| putative ATP-dependent Clp protease proteolytic subunit
           [Streptococcus equi subsp. zooepidemicus]
          Length = 196

 Score =  231 bits (589), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 95/192 (49%), Positives = 140/192 (72%), Gaps = 2/192 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDNTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K + RL +I  +N GKT +++ K  +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRHRLEKILAQNAGKTIKQIHKDAERDYWMSAEET 180

Query: 196 CDWGVVDKVLMS 207
             +G +D+++ +
Sbjct: 181 LAYGFIDEIMEN 192


>gi|239931287|ref|ZP_04688240.1| ATP dependent Clp protease proteolytic subunit 1 [Streptomyces
           ghanaensis ATCC 14672]
          Length = 201

 Score =  231 bits (589), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 93/182 (51%), Positives = 126/182 (69%), Gaps = 1/182 (0%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           E +  G     +Y+RLL ERI+F+   ++D +A  I AQLL L ++ P K+I LYINSPG
Sbjct: 7   EPSIGGGLGDQVYNRLLNERIIFLGQPVDDDIANKITAQLLLLASD-PDKDIYLYINSPG 65

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           G +TAGMAIYDTMQ+IK  + T  MG AASMG  LLSAG  G RFALPNA IL+HQPS G
Sbjct: 66  GSITAGMAIYDTMQYIKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAG 125

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            +G ASDI+ HA+ ++  KRR+ E+  ++ G+T E++ +  DRD    A EA ++G++D 
Sbjct: 126 LAGSASDIKIHAERLLHTKRRMAELTSQHTGQTVEQITRDSDRDRWFDAFEAKEYGLIDD 185

Query: 204 VL 205
           V+
Sbjct: 186 VI 187


>gi|544044|sp|P36398|CLPP_STRSL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|347999|gb|AAA26891.1| ATP-dependent protease proteolytic subunit [Streptococcus
           salivarius]
          Length = 196

 Score =  231 bits (589), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 93/192 (48%), Positives = 136/192 (70%), Gaps = 2/192 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGE SYDIYSRLLK+RI+ +TG +ED+MA  I AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGEASYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTVIASSGTKGKRFMLPNAEYMI 120

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K +  L +I   N G+  E+V    +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRNNLEQILADNSGQPIEKVHVDAERDNWMSAQET 180

Query: 196 CDWGVVDKVLMS 207
            ++G +D+++ +
Sbjct: 181 LEYGFIDEIMAN 192


>gi|108935917|sp|Q2J9A9|CLPP3_FRASC RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
           AltName: Full=Endopeptidase Clp 3
          Length = 213

 Score =  231 bits (589), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 102/192 (53%), Positives = 144/192 (75%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P +VE+T+RGE S D YS+LLKERIVF+  QI+D  A  + AQLLFLE+E+P ++IS+
Sbjct: 12  VLPNIVERTSRGEYSMDPYSKLLKERIVFLGVQIDDVSANDVMAQLLFLESEDPDRDISI 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+  AIYDTMQF++P IST CMGQAAS  ++LL+AG  G RFAL N+RIL+
Sbjct: 72  YINSPGGSFTSLTAIYDTMQFVRPDISTICMGQAASAAAVLLAAGTPGKRFALENSRILI 131

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPS    GQ+SDIE  A++I++++     +  ++ G+T  E+ +  +RD I SA EA +
Sbjct: 132 HQPSAQGEGQSSDIEIQAREILRVRALQETMLARHTGRTETEIRRDTERDKIFSADEAEE 191

Query: 198 WGVVDKVLMSRI 209
           +G++D+V+MSR 
Sbjct: 192 YGLIDEVIMSRK 203


>gi|312864716|ref|ZP_07724947.1| endopeptidase Clp [Streptococcus downei F0415]
 gi|311099843|gb|EFQ58056.1| endopeptidase Clp [Streptococcus downei F0415]
          Length = 196

 Score =  231 bits (589), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 93/192 (48%), Positives = 138/192 (71%), Gaps = 2/192 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RIV +TG +ED+MA  I AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIVMLTGPVEDNMANSIIAQLLFLDAQDSSKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LP+A  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGAKGKRFMLPHAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q SD+   A+ +++ +  L +I   N G+T +++    +RD+ M+A E 
Sbjct: 121 HQPMGGTGGGTQQSDMAIAAEHLLQTRETLEKILADNSGQTLKKIHADAERDNWMTAKET 180

Query: 196 CDWGVVDKVLMS 207
            D+G +D+++ +
Sbjct: 181 LDYGFIDEIMEN 192


>gi|318060124|ref|ZP_07978847.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces sp.
           SA3_actG]
          Length = 201

 Score =  231 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 90/183 (49%), Positives = 123/183 (67%), Gaps = 1/183 (0%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           E  + G     +YSRLL ERI+F+  Q++D +A  I AQ+L L A+ P K+I LYINSPG
Sbjct: 7   EAFSGGGLGDQVYSRLLGERIIFLGQQVDDDIANKITAQMLLLAAD-PSKDIYLYINSPG 65

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           G VTAGMAIYDTMQ+I   + T  MG AASMG  LL+ G  G RFALPN  IL+HQ S G
Sbjct: 66  GSVTAGMAIYDTMQYIPNDVITIGMGMAASMGQFLLTGGTPGKRFALPNTDILMHQGSAG 125

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
             G ASDI+  A+ +++ K R+ EI  ++ G+T E++ +  DRD   +A EA D+G++D+
Sbjct: 126 IGGTASDIKIQAEYLLRTKNRMAEITARHSGQTIEKIIRDGDRDRWFTAEEAKDYGLIDE 185

Query: 204 VLM 206
           ++ 
Sbjct: 186 IIT 188


>gi|296123571|ref|YP_003631349.1| endopeptidase Clp [Planctomyces limnophilus DSM 3776]
 gi|296015911|gb|ADG69150.1| Endopeptidase Clp [Planctomyces limnophilus DSM 3776]
          Length = 227

 Score =  230 bits (588), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 84/178 (47%), Positives = 124/178 (69%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           +R   +   LL+ RI+F+ G I D  A LI  +LLFL+AEN  ++I  Y+NSPGG VTA 
Sbjct: 23  QRQMGLGDLLLENRIIFLDGPIHDASANLIVMKLLFLQAENRHQDIHFYVNSPGGSVTAT 82

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
           MAIYDTMQF++  I+T+C+G AAS G+++L+ G KG R+ LP+ ++++HQP G   GQ S
Sbjct: 83  MAIYDTMQFLQCDIATYCVGLAASGGAIVLAGGTKGKRYCLPHGKVMIHQPYGEVGGQVS 142

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           DIE  A+DI+  +R LNEI   +C +  E + +  +RD+ M+A +A D+G+VD+VL +
Sbjct: 143 DIEIQARDILDTRRVLNEILAHHCNQPIEIIARDTERDYYMNAYQAKDYGIVDEVLSN 200


>gi|291297752|ref|YP_003509030.1| endopeptidase Clp [Stackebrandtia nassauensis DSM 44728]
 gi|290566972|gb|ADD39937.1| Endopeptidase Clp [Stackebrandtia nassauensis DSM 44728]
          Length = 204

 Score =  230 bits (588), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 84/193 (43%), Positives = 125/193 (64%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P   E    G     + +RLL++RI+ +  +++D +A  +CAQLL L AEN + +ISLY
Sbjct: 1   MPSATETPPIGTADDQLSARLLRQRIIVLGTEVDDQVANRLCAQLLLLSAENSRDDISLY 60

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG V+AGMAIYDTM+ I   + T  MG AASMG +LL AG  G R++LPN+ +LLH
Sbjct: 61  INSPGGSVSAGMAIYDTMRLIPNDVRTVAMGLAASMGQVLLCAGTAGKRYSLPNSHVLLH 120

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           Q S GF G A+D+E +A  + ++  R+ E+  ++ G+  E+VEK   RD    A+EA ++
Sbjct: 121 QGSAGFGGTAADVEIYAGHLERVSARMTELVARHTGQPVEKVEKDSLRDRWFDAAEALEY 180

Query: 199 GVVDKVLMSRIDI 211
           G +D ++    D+
Sbjct: 181 GFIDHIVERMDDV 193


>gi|288924566|ref|ZP_06418503.1| Clp protease [Prevotella buccae D17]
 gi|315607428|ref|ZP_07882424.1| ATP-dependent Clp protease proteolytic subunit [Prevotella buccae
           ATCC 33574]
 gi|288338353|gb|EFC76702.1| Clp protease [Prevotella buccae D17]
 gi|315250860|gb|EFU30853.1| ATP-dependent Clp protease proteolytic subunit [Prevotella buccae
           ATCC 33574]
          Length = 222

 Score =  230 bits (588), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 84/190 (44%), Positives = 135/190 (71%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  +I+D+ A  + AQLL+L++ +P K+IS+Y+
Sbjct: 33  PYILEERQLNVTQMDVFSRLMMDRIIFLGTEIDDYTANTLQAQLLYLDSTDPGKDISIYL 92

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VTAG+ IYDTMQF+   ++T C G AASM ++LL AG++G R ALP++R+++HQ
Sbjct: 93  NSPGGSVTAGLGIYDTMQFVSSDVATICTGMAASMAAVLLVAGKEGKRQALPHSRVMIHQ 152

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I K K+ L  I  ++    +++V +  DR++ M+A EA ++G
Sbjct: 153 PLGGVQGQASDIEIEAKEIQKFKKELYNIISEHSHTPFDKVWQDSDRNYWMTADEAKEYG 212

Query: 200 VVDKVLMSRI 209
           ++D VL ++ 
Sbjct: 213 MIDMVLKNKA 222


>gi|86739913|ref|YP_480313.1| ATP-dependent Clp protease proteolytic subunit [Frankia sp. CcI3]
 gi|86566775|gb|ABD10584.1| ATP-dependent Clp protease proteolytic subunit ClpP [Frankia sp.
           CcI3]
          Length = 226

 Score =  230 bits (588), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 100/192 (52%), Positives = 143/192 (74%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P ++E+T+RGE   D YS+LLKERIVF+  QI+D  A  + AQLLFLE+E+P ++IS+
Sbjct: 27  VLPNIIEKTSRGEYGMDPYSKLLKERIVFLGVQIDDVSANDVMAQLLFLESEDPDRDISI 86

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+  AIYDTMQF++P IST CMGQAAS  ++LL+AG  G RFAL N+RIL+
Sbjct: 87  YINSPGGSFTSLTAIYDTMQFVRPDISTICMGQAASAAAVLLAAGTPGKRFALENSRILI 146

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPS    GQ+SDIE  A++I++++  L  +   + GK  E++ K ++RD I SA EA +
Sbjct: 147 HQPSAQGEGQSSDIEIQAREILRMRSLLERMLAVHTGKKEEDIRKDIERDKIFSADEAKE 206

Query: 198 WGVVDKVLMSRI 209
           +G++D+V+ +R 
Sbjct: 207 YGLIDEVIKTRK 218


>gi|318076382|ref|ZP_07983714.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces sp.
           SA3_actF]
          Length = 205

 Score =  230 bits (588), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 92/191 (48%), Positives = 126/191 (65%), Gaps = 2/191 (1%)

Query: 17  GLVPMVV-EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
            L+P    E  + G     +YSRLL ERI+F+  Q++D +A  I AQ+L L A+ P K+I
Sbjct: 3   NLMPSAAGEAFSGGGLGDQVYSRLLGERIIFLGQQVDDDIANKITAQMLLLAAD-PSKDI 61

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMAIYDTMQ+I   + T  MG AASMG  LL+ G  G RFALPN  I
Sbjct: 62  YLYINSPGGSVTAGMAIYDTMQYIPNDVITIGMGMAASMGQFLLTGGTPGKRFALPNTDI 121

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQ S G  G ASDI+  A+ +++ K R+ EI  ++ G+T E++ +  DRD   +A EA
Sbjct: 122 LMHQGSAGIGGTASDIKIQAEYLLRTKNRMAEITARHSGQTIEKIIRDGDRDRWFTAEEA 181

Query: 196 CDWGVVDKVLM 206
            D+G++D+++ 
Sbjct: 182 KDYGLIDEIIT 192


>gi|254392448|ref|ZP_05007629.1| ATP-dependent Clp protease proteolytic subunit 1 [Streptomyces
           clavuligerus ATCC 27064]
 gi|197706116|gb|EDY51928.1| ATP-dependent Clp protease proteolytic subunit 1 [Streptomyces
           clavuligerus ATCC 27064]
          Length = 204

 Score =  230 bits (588), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 87/190 (45%), Positives = 127/190 (66%), Gaps = 1/190 (0%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
             +P +  + + G     +YSRLL ERI+F+  Q++D +A  I AQ+L L A+ P+K+I 
Sbjct: 3   NPMPYLAGEPSLGGLGDQVYSRLLGERIIFLGQQVDDDIANKITAQMLLLAAD-PEKDIF 61

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGMA+YDTMQ+I   + T  MG AASMG  LL+ G  G RFALP+  IL
Sbjct: 62  LYINSPGGSVTAGMAVYDTMQYIPNDVVTIGMGMAASMGQFLLTGGTPGKRFALPHTDIL 121

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQ S G  G ASDI+  A+ +++ K+R+ EI  ++ G+T E + +  DRD   +A EA 
Sbjct: 122 MHQGSAGLGGTASDIKIQAEYLLRTKQRMAEITARHSGQTVEAIIRDGDRDRWFTAEEAR 181

Query: 197 DWGVVDKVLM 206
           ++G++D+++ 
Sbjct: 182 EYGLIDEIIT 191


>gi|297199671|ref|ZP_06917068.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sviceus ATCC 29083]
 gi|197713959|gb|EDY57993.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sviceus ATCC 29083]
          Length = 219

 Score =  230 bits (588), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 97/206 (47%), Positives = 134/206 (65%), Gaps = 2/206 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYD-IYSRLLKERIVFVTGQIEDHMATLI 59
           M   G   + +      L+P      + G    D +Y+RLL ERI+F+   ++D +A  I
Sbjct: 1   MRRPGAVVRRAGGYVTNLMPSAAGDPSIGGGLGDQVYNRLLGERIIFLGQAVDDDIANKI 60

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
            AQLL L A+ P+K+I LYINSPGG +TAGMAIYDTMQ+IK  + T  MG AASMG  LL
Sbjct: 61  TAQLLLLAAD-PEKDIYLYINSPGGSITAGMAIYDTMQYIKNDVVTIAMGLAASMGQFLL 119

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
           SAG  G RFALPNA IL+HQPS G +G ASDI+ HA+ ++  K+R+ E+  ++ G+T E+
Sbjct: 120 SAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSQHTGQTIEQ 179

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVL 205
           + +  DRD    A EA ++G++D V+
Sbjct: 180 ITRDSDRDRWFDAHEAKEYGLIDDVI 205


>gi|28493447|ref|NP_787608.1| ATP-dependent Clp protease proteolytic subunit [Tropheryma whipplei
           str. Twist]
 gi|28572440|ref|NP_789220.1| ATP-dependent Clp protease proteolytic subunit [Tropheryma whipplei
           TW08/27]
 gi|67460538|sp|Q83G49|CLPP1_TROWT RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|67460539|sp|Q83I18|CLPP2_TROW8 RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|28410571|emb|CAD66958.1| ATP dependent Clp protease proteolytic subunit 2 [Tropheryma
           whipplei TW08/27]
 gi|28476488|gb|AAO44577.1| ATP-dependent Clp protease proteolytic subunit [Tropheryma whipplei
           str. Twist]
          Length = 207

 Score =  230 bits (588), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 89/194 (45%), Positives = 138/194 (71%), Gaps = 2/194 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P + E+T  G +  D Y++L ++RIVF+  QI+D  A  + AQLL LE ++ +++I +
Sbjct: 8   ILPSLDERTAYGYKQVDPYTKLFEDRIVFLGVQIDDASADDVMAQLLVLEGQDAERDIIM 67

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+I+P I T C+GQAAS  +++LSAG  G R ALPNARIL+
Sbjct: 68  YINSPGGSFTAMTAIYDTMQYIRPQIQTVCLGQAASAAAVILSAGTPGKRLALPNARILI 127

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  +    GQASDIE  A++I++++  L +   ++  K+ ++V K +DRD I+S+ +A
Sbjct: 128 HQPVVASSGYGQASDIEIQAREIMRMREWLEKTLAQHSNKSVKQVSKDIDRDKILSSEQA 187

Query: 196 CDWGVVDKVLMSRI 209
            ++G++D++L+SR 
Sbjct: 188 LEYGLIDQILVSRK 201


>gi|170016746|ref|YP_001727665.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Leuconostoc
           citreum KM20]
 gi|259585959|sp|B1MXG9|CLPP_LEUCK RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|169803603|gb|ACA82221.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Leuconostoc
           citreum KM20]
          Length = 200

 Score =  230 bits (588), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 101/197 (51%), Positives = 134/197 (68%), Gaps = 2/197 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           + P V+EQT  G  SYD+ SRLLK+RIV V G++ED MAT I AQLLFLEA++P KEIS+
Sbjct: 1   MWPGVIEQTANGRESYDLPSRLLKDRIVLVQGEVEDSMATSIVAQLLFLEAQDPTKEISM 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG++I DTM FIK P++T  MG AASMG+++ S+GEKG RF LPNA  L+
Sbjct: 61  YINSPGGSVTAGLSITDTMNFIKAPVTTIVMGLAASMGTIIASSGEKGHRFMLPNAEYLI 120

Query: 138 HQPSGGFSG--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP GG  G  Q +D+   A+ + K + +LN+I      +  E + +  +RDH MSA E 
Sbjct: 121 HQPMGGAVGGTQQTDMAIIAEQLTKTRDKLNKILADASDRDLETIARDTERDHWMSAEET 180

Query: 196 CDWGVVDKVLMSRIDIE 212
             +G +D +L    +  
Sbjct: 181 LAYGFIDGILTKSGEKP 197


>gi|86741463|ref|YP_481863.1| ATP-dependent Clp protease proteolytic subunit [Frankia sp. CcI3]
 gi|108935918|sp|Q2J9A8|CLPP4_FRASC RecName: Full=ATP-dependent Clp protease proteolytic subunit 4;
           AltName: Full=Endopeptidase Clp 4
 gi|86568325|gb|ABD12134.1| ATP-dependent Clp protease proteolytic subunit ClpP / ClpP1
           peptidase. Serine peptidase. MEROPS family S14 [Frankia
           sp. CcI3]
          Length = 238

 Score =  230 bits (588), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 86/188 (45%), Positives = 121/188 (64%)

Query: 26  TNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV 85
           +  G     ++SRLL+ RIVF+   +ED +A  I A+LL L AE+P  +I LYINSPGG 
Sbjct: 26  SGLGSADDQVFSRLLENRIVFLGSVVEDAVANAISAKLLLLAAEDPAADIYLYINSPGGS 85

Query: 86  VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS 145
           V+AGMAIYDTMQ++   ++T  +G A SMG  LL AG  G R+ALP+ARI++HQP GG  
Sbjct: 86  VSAGMAIYDTMQYVGNDVATVALGLAGSMGQFLLCAGTAGKRYALPHARIMMHQPHGGIG 145

Query: 146 GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           G A+DI   A+ ++  KR L E    + G+T E++E   DRD   +A EA ++G+VD V+
Sbjct: 146 GTAADISIQAEQMLYTKRTLQERIAFHTGQTVEQIETDSDRDRWFTAEEAKEYGLVDHVV 205

Query: 206 MSRIDIEE 213
           +    +  
Sbjct: 206 VRADQVPS 213


>gi|296129241|ref|YP_003636491.1| Endopeptidase Clp [Cellulomonas flavigena DSM 20109]
 gi|296021056|gb|ADG74292.1| Endopeptidase Clp [Cellulomonas flavigena DSM 20109]
          Length = 231

 Score =  230 bits (587), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 90/194 (46%), Positives = 138/194 (71%), Gaps = 2/194 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++RI+F+  Q++D  A  + AQLL LE+ +P ++I+L
Sbjct: 28  VLPQFEERTAYGFKRQDPYTKLFEDRIIFLGVQVDDASADDVMAQLLVLESTDPDRDITL 87

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+IKP I T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 88  YINSPGGSFTALTAIYDTMQYIKPHIQTVCLGQAASAAAILLAAGSPGKRLALPNARVLI 147

Query: 138 HQPSGGFSG--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+    G  QASDIE  A ++++I+  L +   ++ G+  E+V++ ++RD I++A++A
Sbjct: 148 HQPAMEGGGYAQASDIEIQANELIRIRDWLEKALAQHTGRPLEQVQQDIERDKILTAAQA 207

Query: 196 CDWGVVDKVLMSRI 209
            ++G+VD+VL SR 
Sbjct: 208 KEYGIVDQVLESRK 221


>gi|281421760|ref|ZP_06252759.1| Clp protease [Prevotella copri DSM 18205]
 gi|281404255|gb|EFB34935.1| Clp protease [Prevotella copri DSM 18205]
          Length = 220

 Score =  230 bits (587), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 85/198 (42%), Positives = 138/198 (69%), Gaps = 2/198 (1%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
           ++  ++   P ++E+        D++SRL+ +RI+F+  QI+D+ A  + AQLL+L++ +
Sbjct: 25  AQAQYMN--PYILEERQLNVTQMDVFSRLMMDRIIFLGTQIDDYTANTLQAQLLYLDSVD 82

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
             K+IS+Y+NSPGG VTAG+ IYDTMQFI   ++T C G AASM ++LL +G++G R AL
Sbjct: 83  SGKDISIYLNSPGGSVTAGLGIYDTMQFISSDVATICTGMAASMAAVLLVSGQEGKRSAL 142

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           P++R+++HQP GG  GQASDIE  A++I+K+K+ L  I   +    Y++V    DR++ M
Sbjct: 143 PHSRVMIHQPLGGVQGQASDIEIEAREILKMKKELYTIISDHSHTPYDKVYADSDRNYWM 202

Query: 191 SASEACDWGVVDKVLMSR 208
           +A EA ++G++D VL+ +
Sbjct: 203 TAEEAKEYGMIDNVLVRK 220


>gi|149528358|ref|XP_001515048.1| PREDICTED: similar to ClpP caseinolytic peptidase, ATP-dependent,
           proteolytic subunit homolog (E. coli), partial
           [Ornithorhynchus anatinus]
          Length = 430

 Score =  230 bits (587), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 99/161 (61%), Positives = 133/161 (82%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P+VVEQT RGER+YDIYSRLL+ERI+ V G I+D +A+L+ AQLLFL++E+ +K I +YI
Sbjct: 270 PIVVEQTGRGERAYDIYSRLLRERIICVMGPIDDSLASLVIAQLLFLQSESNKKPIHMYI 329

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGGVVT+G+AIYDTMQ+I  PI T+C+GQAASMGSLLL+AG  GMR +LPN+RI++HQ
Sbjct: 330 NSPGGVVTSGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIHQ 389

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           PSGG  GQA+DI   A++I+K+K++L  IY K+  +  + +
Sbjct: 390 PSGGARGQATDIAIQAEEIMKLKKQLYGIYAKHTKQPLDVI 430


>gi|294812618|ref|ZP_06771261.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           clavuligerus ATCC 27064]
 gi|326440934|ref|ZP_08215668.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           clavuligerus ATCC 27064]
 gi|294325217|gb|EFG06860.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           clavuligerus ATCC 27064]
          Length = 200

 Score =  230 bits (587), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 87/188 (46%), Positives = 127/188 (67%), Gaps = 1/188 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P +  + + G     +YSRLL ERI+F+  Q++D +A  I AQ+L L A+ P+K+I LY
Sbjct: 1   MPYLAGEPSLGGLGDQVYSRLLGERIIFLGQQVDDDIANKITAQMLLLAAD-PEKDIFLY 59

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAGMA+YDTMQ+I   + T  MG AASMG  LL+ G  G RFALP+  IL+H
Sbjct: 60  INSPGGSVTAGMAVYDTMQYIPNDVVTIGMGMAASMGQFLLTGGTPGKRFALPHTDILMH 119

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           Q S G  G ASDI+  A+ +++ K+R+ EI  ++ G+T E + +  DRD   +A EA ++
Sbjct: 120 QGSAGLGGTASDIKIQAEYLLRTKQRMAEITARHSGQTVEAIIRDGDRDRWFTAEEAREY 179

Query: 199 GVVDKVLM 206
           G++D+++ 
Sbjct: 180 GLIDEIIT 187


>gi|217071428|gb|ACJ84074.1| unknown [Medicago truncatula]
          Length = 297

 Score =  230 bits (587), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 76/176 (43%), Positives = 122/176 (69%)

Query: 31  RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGM 90
              D  + LL++RIVF+  Q++D  A  + +QLLFL+A++P K+I L+INSPGG VTAGM
Sbjct: 76  EELDTTNMLLRQRIVFLGSQVDDMTADFVISQLLFLDADDPTKDIKLFINSPGGSVTAGM 135

Query: 91  AIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASD 150
            +YD M+  K  +ST C+G AASMG+ LL+AG KG R+ +PN+R+++HQP G   G+A++
Sbjct: 136 GVYDAMKLCKADVSTVCLGLAASMGAFLLAAGTKGKRYCMPNSRVMIHQPLGSAGGKATE 195

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           +   A++++  K ++N+I  +  GK  E++E   DRD+ M+  E  ++G++D V+ 
Sbjct: 196 MSIRARELMYHKIKINKILSRITGKPEEQIELDTDRDNFMNPWEGKEYGLIDDVID 251


>gi|290579971|ref|YP_003484363.1| putative ATP-dependent Clp protease proteolytic subunit
           [Streptococcus mutans NN2025]
 gi|254996870|dbj|BAH87471.1| putative ATP-dependent Clp protease proteolytic subunit
           [Streptococcus mutans NN2025]
          Length = 196

 Score =  230 bits (587), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 98/192 (51%), Positives = 139/192 (72%), Gaps = 2/192 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  I AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  L+
Sbjct: 61  YINSPGGSVSAGLAIVDTMNFIKSDVQTIVMGIAASMGTIIASSGAKGKRFMLPNAEYLI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q SD+   A+ ++K +++L +I   N GKT +++ K  +RD+ M A E 
Sbjct: 121 HQPMGGTGGGTQQSDMAIAAEQLLKTRKKLEKILSDNSGKTVKQIHKDAERDYWMDAKET 180

Query: 196 CDWGVVDKVLMS 207
             +G +D+++ +
Sbjct: 181 LKYGFIDEIMEN 192


>gi|184200754|ref|YP_001854961.1| ATP-dependent Clp protease proteolytic subunit [Kocuria rhizophila
           DC2201]
 gi|183580984|dbj|BAG29455.1| ATP-dependent Clp protease proteolytic subunit [Kocuria rhizophila
           DC2201]
          Length = 217

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 93/193 (48%), Positives = 127/193 (65%), Gaps = 1/193 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
            P + +    G+  Y +Y+RLLKERI+++  ++ D  A LIC+Q+L L AE+P+ +I LY
Sbjct: 15  TPRMEDMAPGGQDDY-VYNRLLKERIIWLGSEVRDTNANLICSQMLLLSAEDPEADIFLY 73

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAGMAIYDTMQ I   + T   G AASMG  LLS+G KG R+A PNARIL+H
Sbjct: 74  INSPGGSVTAGMAIYDTMQLIPNDVVTVATGLAASMGQFLLSSGAKGKRYATPNARILMH 133

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  G ASDI   A+ I+ +K+RL E+  +  G+T E + +  DRD+   A  A ++
Sbjct: 134 QPSGGMGGTASDIRVQAELILSMKQRLAELTAEQTGQTLETILRDNDRDNWFDAQRALEY 193

Query: 199 GVVDKVLMSRIDI 211
           G  D +  S  ++
Sbjct: 194 GFFDHIAQSASNV 206


>gi|118586974|ref|ZP_01544406.1| ATP-dependent Clp protease, proteolytic subunit [Oenococcus oeni
           ATCC BAA-1163]
 gi|45597799|emb|CAE54287.1| ClpP protease [Oenococcus oeni]
 gi|118432596|gb|EAV39330.1| ATP-dependent Clp protease, proteolytic subunit [Oenococcus oeni
           ATCC BAA-1163]
          Length = 202

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 100/190 (52%), Positives = 134/190 (70%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           + P V+EQT  G  SYD+ SRLLK+RI+ V G++ED MAT I AQLLFL+A++P K+I +
Sbjct: 1   MWPGVIEQTANGRESYDLPSRLLKDRIILVQGEVEDQMATSIVAQLLFLDAQDPNKDIYM 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAGMAI DTM FI+  + T  MG AASM +++ S+G KG RF LPNA  L+
Sbjct: 61  YINSPGGSVTAGMAIVDTMNFIRSDVQTIVMGMAASMATIIASSGTKGKRFMLPNAEYLI 120

Query: 138 HQPSGGFSG--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP GG     Q +D+   A  ++K ++RLN I  +N GK  E++EK  +RDH M + E 
Sbjct: 121 HQPMGGAGAGTQQTDMSIIADQLLKTRKRLNNILKENSGKPIEKIEKDTERDHWMDSKET 180

Query: 196 CDWGVVDKVL 205
            D+G++DK+L
Sbjct: 181 LDYGLIDKIL 190


>gi|46203182|ref|ZP_00051927.2| COG0740: Protease subunit of ATP-dependent Clp proteases
           [Magnetospirillum magnetotacticum MS-1]
          Length = 201

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 96/191 (50%), Positives = 138/191 (72%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVE+T  GER++D++SRLL ERIVF+  +I+D +A ++ AQLL LE++ P +EI LY
Sbjct: 6   IPTVVERTPLGERAFDVFSRLLSERIVFLGTEIDDGVANVVMAQLLHLESDAPDQEIGLY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TA MAIYDTMQF++  +ST CMGQAAS  ++LL+AG  G RF L ++R+LLH
Sbjct: 66  INSPGGSATALMAIYDTMQFVRCDVSTICMGQAASAAAVLLAAGTPGKRFVLEHSRVLLH 125

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  G  SD+   A++I++I+    E+  ++ G+T E +    DRD +++A +A ++
Sbjct: 126 QPSGGGEGTISDLSIQAEEILRIRSETEEVLARHTGQTVERLRADTDRDLVLTARQAVEY 185

Query: 199 GVVDKVLMSRI 209
           GV D V+ SR 
Sbjct: 186 GVADAVVTSRK 196


>gi|238062970|ref|ZP_04607679.1| endopeptidase Clp [Micromonospora sp. ATCC 39149]
 gi|237884781|gb|EEP73609.1| endopeptidase Clp [Micromonospora sp. ATCC 39149]
          Length = 216

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 91/207 (43%), Positives = 128/207 (61%), Gaps = 13/207 (6%)

Query: 3   FEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQ 62
            E    K +ED F+G +  VV+            +RLL +RI+ +  +++D +A  ICAQ
Sbjct: 21  IEAHVAKTAED-FVGPIDTVVQ------------NRLLGKRIIVLGSELDDSVANRICAQ 67

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           LL L +E+P+ +I LYINSPGG VTAGMAIYDTMQ +   ++T  MG  ASMG  LL AG
Sbjct: 68  LLILSSEDPRADIQLYINSPGGSVTAGMAIYDTMQSVPNDVATVAMGMTASMGQFLLCAG 127

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
            +G R+ALP+A I++HQPSGG +G ASD+   A  ++  KR   E    + G+  E +E 
Sbjct: 128 ARGKRYALPHASIMMHQPSGGIAGTASDVAIRAAQLLYTKRVCQERIAFHTGQPVERIEA 187

Query: 183 TLDRDHIMSASEACDWGVVDKVLMSRI 209
             DRD   +A EA D+G++D VL  ++
Sbjct: 188 DSDRDRWFTAEEAKDYGLIDHVLHRKV 214


>gi|297626026|ref|YP_003687789.1| ATP-dependent Clp protease proteolytic subunit 1 (Endopeptidase Clp
           1) [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296921791|emb|CBL56351.1| ATP-dependent Clp protease proteolytic subunit 1 (Endopeptidase Clp
           1) [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 211

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 85/182 (46%), Positives = 121/182 (66%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           S ++Y  LL  RIVF+  +++D  +  ICAQ+L L AE+P ++I LYINSPGG + +GMA
Sbjct: 24  SDNVYQSLLANRIVFLGSEVKDENSNAICAQMLLLNAEDPHRDIYLYINSPGGSIDSGMA 83

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYDTMQ+I   ++T  +G AASMG  LLS G KG RFALP+ARIL+HQPSGG  G ASD+
Sbjct: 84  IYDTMQWISNDVATVALGLAASMGQFLLSGGAKGKRFALPHARILMHQPSGGIGGTASDV 143

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           +  A+  + +K  +  +   + G+T E++EK  DRD   +A +A ++G +D V      I
Sbjct: 144 KIQAEQSIHLKHEMAALIAGHTGQTVEQIEKDSDRDRWFTAQQALEYGFIDHVYERASKI 203

Query: 212 EE 213
            +
Sbjct: 204 SD 205


>gi|146321407|ref|YP_001201118.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus suis
           98HAH33]
 gi|223933328|ref|ZP_03625316.1| Endopeptidase Clp [Streptococcus suis 89/1591]
 gi|253752247|ref|YP_003025388.1| putative ATP-dependent Clp protease proteolytic subunit
           [Streptococcus suis SC84]
 gi|253754073|ref|YP_003027214.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus suis
           P1/7]
 gi|253756007|ref|YP_003029147.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus suis
           BM407]
 gi|330833177|ref|YP_004402002.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus suis
           ST3]
 gi|166214715|sp|A4W2X9|CLPP_STRS2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|145692213|gb|ABP92718.1| putative ATP-dependent protease proteolytic subunit [Streptococcus
           suis 98HAH33]
 gi|223897978|gb|EEF64351.1| Endopeptidase Clp [Streptococcus suis 89/1591]
 gi|251816536|emb|CAZ52172.1| putative ATP-dependent Clp protease proteolytic subunit
           [Streptococcus suis SC84]
 gi|251818471|emb|CAZ56300.1| putative ATP-dependent Clp protease proteolytic subunit
           [Streptococcus suis BM407]
 gi|251820319|emb|CAR46838.1| putative ATP-dependent Clp protease proteolytic subunit
           [Streptococcus suis P1/7]
 gi|292558838|gb|ADE31839.1| ATP-dependent Clp protease, proteolytic subunit [Streptococcus suis
           GZ1]
 gi|319758636|gb|ADV70578.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus suis
           JS14]
 gi|329307400|gb|AEB81816.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus suis
           ST3]
          Length = 196

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 96/192 (50%), Positives = 140/192 (72%), Gaps = 2/192 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  I AQLLFL+A++P K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDPTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGTAASMGTIIASSGAKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K + +L +I   N GKT +++ K  +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRNKLEKILADNSGKTVKQIHKDAERDYWMSAEET 180

Query: 196 CDWGVVDKVLMS 207
             +G +D+++ +
Sbjct: 181 LAYGFIDQIMDN 192


>gi|195978714|ref|YP_002123958.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
 gi|195975419|gb|ACG62945.1| ATP-dependent Clp protease proteolytic subunit ClpP [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
          Length = 207

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 95/192 (49%), Positives = 140/192 (72%), Gaps = 2/192 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A++  K+I L
Sbjct: 12  MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDNTKDIYL 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 72  YVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMI 131

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K + RL +I  +N GKT +++ K  +RD+ MSA E 
Sbjct: 132 HQPMGGTGGGTQQTDMAIAAEHLLKTRHRLEKILAQNAGKTIKQIHKDAERDYWMSAEET 191

Query: 196 CDWGVVDKVLMS 207
             +G +D+++ +
Sbjct: 192 LAYGFIDEIMEN 203


>gi|326330783|ref|ZP_08197084.1| Clp protease [Nocardioidaceae bacterium Broad-1]
 gi|325951313|gb|EGD43352.1| Clp protease [Nocardioidaceae bacterium Broad-1]
          Length = 222

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 93/183 (50%), Positives = 129/183 (70%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           +IY+RLL+ERIVF+  ++ D  A  ICAQLL L AE+P+ +I L+INSPGG V AGMAIY
Sbjct: 34  NIYNRLLRERIVFLGSEVRDQNANAICAQLLLLSAEDPEADIFLHINSPGGSVDAGMAIY 93

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           DTM +I   ++T  MG AASMG  LL AG KG R+ALP+ARI++HQPS G  G ASDI+ 
Sbjct: 94  DTMNYIPNDVATVGMGLAASMGQFLLCAGAKGKRYALPHARIMMHQPSSGMGGSASDIKI 153

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
            AQ  + IK+ L E+  ++ G++ E+V    DRD   +A+EA D+G+VD+V+ S  +  +
Sbjct: 154 QAQQSLHIKKVLLELISEHTGQSVEQVTVDADRDRWFTAAEALDYGLVDQVIKSAKEASD 213

Query: 214 KSK 216
           + +
Sbjct: 214 EGR 216


>gi|71902983|ref|YP_279786.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes MGAS6180]
 gi|110816467|sp|Q48V25|CLPP_STRPM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|71802078|gb|AAX71431.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes MGAS6180]
          Length = 196

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 95/192 (49%), Positives = 140/192 (72%), Gaps = 2/192 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDNTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGTKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K + RL +I  +N GKT +++ K  +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRHRLEKILAQNAGKTIKQIHKDAERDYWMSAEET 180

Query: 196 CDWGVVDKVLMS 207
             +G +D+++ +
Sbjct: 181 LTYGFIDEIMEN 192


>gi|325970910|ref|YP_004247101.1| ATP-dependent Clp protease proteolytic subunit [Spirochaeta sp.
           Buddy]
 gi|324026148|gb|ADY12907.1| ATP-dependent Clp protease proteolytic subunit [Spirochaeta sp.
           Buddy]
          Length = 202

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 98/191 (51%), Positives = 146/191 (76%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
             +PMVVEQ+  GER+YDI+SRLLK+RI+F+ G+I D  A L+ AQ+LFL++E+  K+IS
Sbjct: 10  STIPMVVEQSGVGERAYDIFSRLLKDRIIFLDGEIHDANADLVVAQMLFLDSEDSTKDIS 69

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAG+AIYDT+Q++   + T CMGQAASM +LLL++G +G RF LP+AR++
Sbjct: 70  LYINSPGGSVTAGLAIYDTIQYLHCKVQTICMGQAASMAALLLASGSEGKRFMLPSARVM 129

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQ++DI  HA++I ++K+   +I  ++  K++E+V K ++RD  +S+ +A 
Sbjct: 130 IHQPWGGVEGQSTDISIHAKEISRLKKLTIDIIAQHTHKSFEQVSKDVERDFFLSSDDAV 189

Query: 197 DWGVVDKVLMS 207
            +G+VD V+  
Sbjct: 190 SYGIVDSVMRR 200


>gi|3599968|gb|AAC35489.1| clp protease [Arabidopsis thaliana]
          Length = 310

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 73/176 (41%), Positives = 123/176 (69%)

Query: 31  RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGM 90
              D  + LL++RIVF+  Q++D  A L+ +QLL L+AE+ +++I+L+INSPGG +TAGM
Sbjct: 83  EELDTTNMLLRQRIVFLGSQVDDMTADLVISQLLLLDAEDSERDITLFINSPGGSITAGM 142

Query: 91  AIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASD 150
            IYD M+  K  +ST C+G AASMG+ LL++G KG R+ +PN+++++HQP G   G+A++
Sbjct: 143 GIYDAMKQCKADVSTVCLGLAASMGAFLLASGSKGKRYCMPNSKVMIHQPLGTAGGKATE 202

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           +    ++++  K +LN+I+ +  GK   E+E   DRD+ ++  EA ++G++D V+ 
Sbjct: 203 MSIRIREMMYHKIKLNKIFSRITGKPESEIESDTDRDNFLNPWEAKEYGLIDAVID 258


>gi|319946500|ref|ZP_08020736.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           australis ATCC 700641]
 gi|319747331|gb|EFV99588.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           australis ATCC 700641]
          Length = 196

 Score =  230 bits (586), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 93/192 (48%), Positives = 138/192 (71%), Gaps = 2/192 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ VTG +ED MA  I AQLLFL+A++  K+I +
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMVTGPVEDQMANSIIAQLLFLDAQDNTKDIYM 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K + RL +I  +N G+T +++    +RD+ M+A E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRHRLEKILAENSGQTLKKIHADAERDNWMTAEET 180

Query: 196 CDWGVVDKVLMS 207
             +G +D+++ +
Sbjct: 181 LAYGFIDEIMSN 192


>gi|118471482|ref|YP_888936.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           smegmatis str. MC2 155]
 gi|118172769|gb|ABK73665.1| Clp protease [Mycobacterium smegmatis str. MC2 155]
          Length = 203

 Score =  230 bits (586), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 89/186 (47%), Positives = 123/186 (66%), Gaps = 1/186 (0%)

Query: 23  VEQTNRGERSYD-IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS 81
           +  T +G    D +Y RLL ERI+F+  Q++D +A  +CAQ+L L AE+P K+I LYINS
Sbjct: 4   MRGTGQGLNLVDSVYERLLAERIIFLGSQVDDDIANRLCAQILLLSAEDPTKDIHLYINS 63

Query: 82  PGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
           PGG ++AGMAIYDTM      I+T+ MG AASMG  LL+AG KG R+ALP+ARIL+HQP 
Sbjct: 64  PGGSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPL 123

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
           GG +G A+DI   A+    IK+ +  +  +  G+  E +E   DRD   +A EA ++G V
Sbjct: 124 GGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAQEALEYGFV 183

Query: 202 DKVLMS 207
           D ++ S
Sbjct: 184 DHIITS 189


>gi|322373950|ref|ZP_08048485.1| Clp protease [Streptococcus sp. C150]
 gi|321277322|gb|EFX54392.1| Clp protease [Streptococcus sp. C150]
          Length = 196

 Score =  230 bits (586), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 94/192 (48%), Positives = 138/192 (71%), Gaps = 2/192 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  I AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K +  L +I   N G++ E+V    +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRNNLEQILADNSGQSIEKVHIDAERDNWMSAQET 180

Query: 196 CDWGVVDKVLMS 207
            ++G +D+++ +
Sbjct: 181 LEYGFIDEIMAN 192


>gi|319745540|gb|EFV97842.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           agalactiae ATCC 13813]
          Length = 200

 Score =  230 bits (586), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 97/192 (50%), Positives = 137/192 (71%), Gaps = 2/192 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TGQ+ED+MA  I AQLLFL+A++  K+I L
Sbjct: 5   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGQVEDNMANSIIAQLLFLDAQDNTKDIYL 64

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 65  YVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMI 124

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q SD+   A+ ++K +  L +I   N G++ E+V    +RD  MSA E 
Sbjct: 125 HQPMGGTGGGTQQSDMAIAAEHLLKTRHTLEKILADNSGQSIEKVHDDAERDRWMSAQET 184

Query: 196 CDWGVVDKVLMS 207
            D+G +D ++ +
Sbjct: 185 LDYGFIDAIMEN 196


>gi|302532651|ref|ZP_07284993.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sp. C]
 gi|302441546|gb|EFL13362.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sp. C]
          Length = 212

 Score =  230 bits (586), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 90/203 (44%), Positives = 130/203 (64%), Gaps = 1/203 (0%)

Query: 14  VFLGLVPMVVE-QTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
               L P   E  T  G     + +RLL +RIV +  Q+++  A  +CAQLL L A++P+
Sbjct: 3   PLTMLAPRAEEGDTPPGHFDDHLAARLLDQRIVLLGTQVDEVSANRVCAQLLLLSAQDPR 62

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
            +ISLY+NSPGG VTAG+AIYDTM+ I   +ST  MG AASMG  LL+ G  G RFALPN
Sbjct: 63  SDISLYVNSPGGSVTAGLAIYDTMRLIPNDVSTLAMGFAASMGQFLLTVGTPGKRFALPN 122

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           ARI++HQPS G  G A+D+E  A+++  IK+ +  I  ++ G++ E + +  DRD   +A
Sbjct: 123 ARIMMHQPSAGIGGTAADVEIQAENLRFIKKAVERITAQHTGQSEETIARDGDRDRWFTA 182

Query: 193 SEACDWGVVDKVLMSRIDIEEKS 215
            +A ++G+VD+V+ S  DI   +
Sbjct: 183 EQAREYGMVDRVVESLADIRPAT 205


>gi|145223175|ref|YP_001133853.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           gilvum PYR-GCK]
 gi|145215661|gb|ABP45065.1| ATP-dependent Clp protease proteolytic subunit ClpP [Mycobacterium
           gilvum PYR-GCK]
          Length = 218

 Score =  230 bits (586), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 86/173 (49%), Positives = 119/173 (68%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL ERI+F+  Q++D +A  +CAQ+L L AE+P K+I LYINSPGG ++AGMAIYD
Sbjct: 37  VYERLLAERIIFLGSQVDDDIANRLCAQILLLSAEDPTKDIHLYINSPGGSISAGMAIYD 96

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM      ++T+ MG AASMG  LL+AG KG R+ALP+ARIL+HQP GG +G A+DI   
Sbjct: 97  TMVLAPCDVATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGITGGAADIAIQ 156

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+    IK+ +  +  +  G+T E +E   DRD   +A EA ++G VD ++ S
Sbjct: 157 AEQFASIKKEMFRLNAEFTGQTIERIEADSDRDRWFTAQEALEYGFVDHIITS 209


>gi|7524837|ref|NP_045839.1| ATP-dependent Clp protease proteolytic subunit [Chlorella vulgaris]
 gi|3023501|sp|P56317|CLPP_CHLVU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|2224431|dbj|BAA57915.1| ATP-dependent Clp protease proteolytic subunit [Chlorella vulgaris]
          Length = 201

 Score =  230 bits (586), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 78/188 (41%), Positives = 128/188 (68%), Gaps = 2/188 (1%)

Query: 19  VPMVVEQTNRGE--RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +       +  D+Y+RL +ER++F+  +++D +A  +   +L+L AE   K + 
Sbjct: 5   VPKVPFRLPGEPSAQWVDLYNRLYRERVLFLCQELDDELANQLIGIMLYLNAEEQNKGLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VT G+A+YD M +IK  ++T C+G AASM S +L+ G++G R ALP++RI+
Sbjct: 65  IYINSPGGSVTCGIAVYDAMNYIKSEVTTICVGTAASMASFILAGGDRGKRIALPHSRIM 124

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQAS++   +Q++++I+R++  IY +  G+T   V + +DRD  +SA EA 
Sbjct: 125 VHQPEGGSQGQASEVLSESQEVMRIRRQVGRIYSERTGQTLSRVSRDMDRDQFLSAREAK 184

Query: 197 DWGVVDKV 204
           ++G+VD+V
Sbjct: 185 EYGLVDQV 192


>gi|255532968|ref|YP_003093340.1| endopeptidase Clp [Pedobacter heparinus DSM 2366]
 gi|255345952|gb|ACU05278.1| Endopeptidase Clp [Pedobacter heparinus DSM 2366]
          Length = 230

 Score =  230 bits (586), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 89/189 (47%), Positives = 134/189 (70%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            + P ++E+        D++SRL+ +RI+F+   I D  A +I AQLLFL++ +  ++I 
Sbjct: 36  AMTPYIIEERQLNVAQMDVFSRLMMDRIIFLGDAIYDGNANIIQAQLLFLQSTDNNRDIQ 95

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG V AG+ IYDTMQ+I P ++T C G AASMG++LL AG KG R ALP++R++
Sbjct: 96  IYINSPGGSVYAGLGIYDTMQYIAPDVATICTGMAASMGAVLLVAGAKGKRAALPHSRVM 155

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  G ASD+E + ++++K+K+ L +I   + G++YE VEK  DRD+ M A EA 
Sbjct: 156 IHQPSGGAQGVASDMEINLREMLKLKKELYDIISNHSGQSYEWVEKASDRDYWMKAEEAK 215

Query: 197 DWGVVDKVL 205
            +G++D+VL
Sbjct: 216 GFGMIDEVL 224


>gi|134097946|ref|YP_001103607.1| ATP-dependent Clp protease proteolytic subunit 1 [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291009144|ref|ZP_06567117.1| ATP-dependent Clp protease proteolytic subunit 1 [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133910569|emb|CAM00682.1| ATP-dependent Clp protease proteolytic subunit 1 [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 192

 Score =  230 bits (586), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 95/185 (51%), Positives = 125/185 (67%), Gaps = 1/185 (0%)

Query: 23  VEQTNRGERSYD-IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS 81
           +  T  G    D +Y RLL+ERI+ +  Q+ED +A  IC+QL+ L AE+P+++ISLYINS
Sbjct: 1   MRTTTNGLSLNDSVYERLLRERIIVLGSQVEDSIANQICSQLILLAAEDPERDISLYINS 60

Query: 82  PGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
           PGG V AGMAIYDTMQ I+P ++T  MG AASMG  LLSAG +G RFALP+ARI++HQPS
Sbjct: 61  PGGSVPAGMAIYDTMQLIQPDVATVAMGFAASMGQFLLSAGARGKRFALPHARIMMHQPS 120

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            G  G ASDI   A+   K KR + E+  +  G+  E++E   DRD   +A EA D+G V
Sbjct: 121 AGIGGTASDIAIQAEVFAKNKREMAELIAEQTGQPIEKIEADSDRDKWFTAEEARDYGFV 180

Query: 202 DKVLM 206
           D +  
Sbjct: 181 DHIAT 185


>gi|24380050|ref|NP_722005.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           mutans UA159]
 gi|60389781|sp|Q8DST7|CLPP_STRMU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|24378042|gb|AAN59311.1|AE014997_1 putative ATP-dependent Clp protease, proteolytic subunit
           [Streptococcus mutans UA159]
          Length = 196

 Score =  230 bits (586), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 98/192 (51%), Positives = 139/192 (72%), Gaps = 2/192 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  I AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  L+
Sbjct: 61  YINSPGGSVSAGLAIVDTMNFIKSDVQTIVMGIAASMGTIIASSGAKGKRFMLPNAEYLI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q SD+   A+ ++K +++L +I   N GKT +++ K  +RD+ M A E 
Sbjct: 121 HQPMGGTGGGTQQSDMAIAAEQLLKTRKKLEKILSDNSGKTIKQIHKDAERDYWMDAKET 180

Query: 196 CDWGVVDKVLMS 207
             +G +D+++ +
Sbjct: 181 LKYGFIDEIMEN 192


>gi|322390033|ref|ZP_08063570.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           parasanguinis ATCC 903]
 gi|321143263|gb|EFX38704.1| ATP-dependent Clp protease, protease subunit [Streptococcus
           parasanguinis ATCC 903]
          Length = 196

 Score =  230 bits (586), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 95/192 (49%), Positives = 138/192 (71%), Gaps = 2/192 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ VTG +ED MA  I AQLLFL+A++  K+I +
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMVTGPVEDQMANSIIAQLLFLDAQDNTKDIYM 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YIN+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YINTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K +  L +I  +N G++ E+V    +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRNNLEKILAENSGQSIEKVHADAERDNWMSAQET 180

Query: 196 CDWGVVDKVLMS 207
            ++G +D+++ +
Sbjct: 181 LEYGFIDEIMAN 192


>gi|29831990|ref|NP_826624.1| ATP-dependent Clp protease proteolytic subunit 1 [Streptomyces
           avermitilis MA-4680]
 gi|67460534|sp|Q82CA6|CLPP3_STRAW RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
           AltName: Full=Endopeptidase Clp 3
 gi|29609108|dbj|BAC73159.1| putative ATP-dependent Clp protease proteolytic subunit 1
           [Streptomyces avermitilis MA-4680]
          Length = 219

 Score =  230 bits (586), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 94/207 (45%), Positives = 130/207 (62%), Gaps = 1/207 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           M   G   + +      L+P        G     +Y+RLL ERI+F+   ++D +A  I 
Sbjct: 1   MRRPGAVVRRAGGYVTNLMPTAAGDPIGGGLGDQVYNRLLGERIIFLGQAVDDDIANKIT 60

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLL L ++ P K+I LYINSPGG +TAGMAIYDTMQ+IK  + T  MG AASMG  LLS
Sbjct: 61  AQLLLLASD-PDKDIYLYINSPGGSITAGMAIYDTMQYIKNDVVTIAMGMAASMGQFLLS 119

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG  G RFALPNA IL+HQPS G +G ASDI+ HA+ ++  K+R+ E+   + G+T E+V
Sbjct: 120 AGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTAFHTGQTVEQV 179

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMS 207
            +  DRD      EA ++G++D ++ +
Sbjct: 180 TRDSDRDRWFDPVEAKEYGLIDDIMPT 206


>gi|320010820|gb|ADW05670.1| Endopeptidase Clp [Streptomyces flavogriseus ATCC 33331]
          Length = 205

 Score =  229 bits (585), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 94/191 (49%), Positives = 125/191 (65%), Gaps = 2/191 (1%)

Query: 17  GLVPMVVEQTNRGERSYD-IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
            L+P    + + G    D +YSRLL ERI+F+  Q++D +A  I AQLL L AE P K+I
Sbjct: 3   NLMPYAAGEPSLGGGLGDQVYSRLLGERIIFLGQQVDDDIANKITAQLLLLAAE-PDKDI 61

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMA+YDTMQ+I   + T  MG AASMG  LL+ G  G RFALPN  I
Sbjct: 62  YLYINSPGGSVTAGMAVYDTMQYIPNDVVTIGMGMAASMGQFLLTGGTAGKRFALPNTDI 121

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQ S G  G ASDI+  AQ +++ K R+ EI   + G+T E + +  DRD   +A EA
Sbjct: 122 LMHQGSAGIGGTASDIKIQAQYLLRTKTRMAEITAHHSGQTVETIIRDGDRDRWYTAEEA 181

Query: 196 CDWGVVDKVLM 206
            D+G++D+++ 
Sbjct: 182 KDYGLIDEIIT 192


>gi|6069464|dbj|BAA85451.1| S-locus protein 2 [Brassica rapa]
          Length = 311

 Score =  229 bits (585), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 73/176 (41%), Positives = 123/176 (69%)

Query: 31  RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGM 90
              D  + LL++RIVF+  Q++D  A L+ +QLL L+A++ +++I+L+INSPGG +TAGM
Sbjct: 84  EELDTTNMLLRQRIVFLGSQVDDMTADLVISQLLLLDAQDSERDITLFINSPGGSITAGM 143

Query: 91  AIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASD 150
            IYD M+  K  +ST C+G AASMG+ LL++G KG R+ +PN+++++HQP G   G+A++
Sbjct: 144 GIYDAMKQCKADVSTVCLGLAASMGAFLLASGSKGKRYCMPNSKVMIHQPLGSAGGKATE 203

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           +    ++++  K +LN+I+ +  GK   E+E   DRD+ ++  EA ++G+VD V+ 
Sbjct: 204 MSIRVREMMYHKIKLNKIFSRITGKPESEIEGDTDRDYFLNPWEAKEYGLVDAVID 259


>gi|300173717|ref|YP_003772883.1| ATP-dependent Clp protease proteolytic subunit [Leuconostoc
           gasicomitatum LMG 18811]
 gi|299888096|emb|CBL92064.1| ATP-dependent Clp protease proteolytic subunit [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 200

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 100/197 (50%), Positives = 132/197 (67%), Gaps = 2/197 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           + P V+EQT  G  SYD+ SRLLK+RI+ V G++ED MAT I AQLLFLEA++P KEIS+
Sbjct: 1   MWPGVIEQTANGRESYDLPSRLLKDRIILVQGEVEDSMATSIVAQLLFLEAQDPTKEISM 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VTAG++I DTM FIK P++T  MG AASMG+++ S+GEKG RF LPNA  L+
Sbjct: 61  YINSPGGSVTAGLSITDTMNFIKAPVTTIVMGLAASMGTIIASSGEKGHRFMLPNAEYLI 120

Query: 138 HQPSGGFSG--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP GG  G  Q +D+   A  + K + +LN+I      K  E +    +RD+ MSA E 
Sbjct: 121 HQPMGGAVGGTQQTDMAIIADQLTKTRAKLNKILADASDKDLETIAHDTERDNWMSAEET 180

Query: 196 CDWGVVDKVLMSRIDIE 212
             +G +D +L    +  
Sbjct: 181 LAYGFIDGILSKAGEKP 197


>gi|294634101|ref|ZP_06712656.1| Clp protease [Streptomyces sp. e14]
 gi|292829915|gb|EFF88269.1| Clp protease [Streptomyces sp. e14]
          Length = 191

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 89/186 (47%), Positives = 134/186 (72%), Gaps = 1/186 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP V+E+T +GERSYD++SRLL ERI+F+  +I+D +A ++ AQLL LE+  P+ EIS+Y
Sbjct: 6   VPYVIERTAQGERSYDVFSRLLNERIIFLGTEIDDGVANVVIAQLLHLESAYPEHEISIY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           +NSPGG  T+ MAIYDTM F++ PISTFC+GQAAS  ++LL+ G+ G RF L +AR+LL 
Sbjct: 66  LNSPGGSFTSLMAIYDTMTFVQSPISTFCVGQAASTAAVLLAGGDPGRRFVLEHARVLLG 125

Query: 139 QP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP SGG  G  SD+   A+++V+++ ++ E+  ++ G     +   +DRD + +A EA  
Sbjct: 126 QPASGGRQGTVSDLALQAKEMVRVRAQVEEVLSRHTGHDPAALRADMDRDKVFTAHEAVA 185

Query: 198 WGVVDK 203
           +G+ D+
Sbjct: 186 YGLADE 191


>gi|213580888|ref|ZP_03362714.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-0664]
          Length = 175

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 115/169 (68%), Positives = 147/169 (86%), Gaps = 2/169 (1%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D+    + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--ERDNLAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIY 169
           AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE+ 
Sbjct: 119 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELI 167


>gi|307705249|ref|ZP_07642116.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus mitis
           SK597]
 gi|307621198|gb|EFO00268.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus mitis
           SK597]
          Length = 202

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 93/198 (46%), Positives = 139/198 (70%), Gaps = 8/198 (4%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE------NP 71
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A+      + 
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQVFLDAQDS 60

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+I LY+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LP
Sbjct: 61  TKDIYLYVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLP 120

Query: 132 NARILLHQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           NA  ++HQP    G   Q +D+   A+ ++K +  L +I  +N G++ E+V    +RD+ 
Sbjct: 121 NAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNTLEKILAENSGQSIEKVHADAERDNW 180

Query: 190 MSASEACDWGVVDKVLMS 207
           MSA E  ++G +D+++ +
Sbjct: 181 MSAQETLEYGFIDEIMAN 198


>gi|303274444|ref|XP_003056542.1| endopeptidase clp chloroplast precursor [Micromonas pusilla
           CCMP1545]
 gi|226462626|gb|EEH59918.1| endopeptidase clp chloroplast precursor [Micromonas pusilla
           CCMP1545]
          Length = 283

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 83/176 (47%), Positives = 125/176 (71%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           + + D +  LL++RIVF+  Q++D  A  + +QLL L+A++P+K+I L+INSPGG VTAG
Sbjct: 73  QEAGDPFGLLLRQRIVFLGNQVDDFTADAVISQLLLLDAQDPKKDIKLFINSPGGSVTAG 132

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
           M IYD MQ  +  +ST CMG AASMG+ LL+AG +G R ++PNARI++HQP GG SGQA 
Sbjct: 133 MGIYDAMQMCRADVSTVCMGLAASMGAFLLTAGSRGKRLSMPNARIMIHQPLGGASGQAV 192

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           DIE  AQ+I+  K  LN +   +  +  +++++  DRD  MS  EA ++G++D+++
Sbjct: 193 DIEIQAQEIMFHKANLNRLMAFHTDQDVKQIDEDTDRDRYMSPLEAKNYGIIDEII 248


>gi|182438716|ref|YP_001826435.1| putative ATP-dependent Clp protease proteolytic subunit 1
           [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|326779365|ref|ZP_08238630.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces cf.
           griseus XylebKG-1]
 gi|178467232|dbj|BAG21752.1| putative ATP-dependent Clp protease proteolytic subunit 1
           [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|326659698|gb|EGE44544.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces cf.
           griseus XylebKG-1]
          Length = 205

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 94/191 (49%), Positives = 125/191 (65%), Gaps = 2/191 (1%)

Query: 17  GLVPMVVEQTNRGERSYD-IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
            L+P    + + G    D +YSRLL ERI+F+  Q++D +A  I AQLL L AE P K+I
Sbjct: 3   NLMPYAAGEPSLGGGLGDQVYSRLLGERIIFLGQQVDDDIANKITAQLLLLAAE-PDKDI 61

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMA+YDTMQ+I   + T  MG AASMG  LL+ G  G RFALPN  I
Sbjct: 62  YLYINSPGGSVTAGMAVYDTMQYIPNDVVTIGMGMAASMGQFLLTGGAAGKRFALPNTDI 121

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQ S G  G ASDI+  AQ +++ K R+ EI   + G+T E + +  DRD   +A EA
Sbjct: 122 LMHQGSAGIGGTASDIKIQAQYLLRTKTRMAEITAHHSGQTVETIIRDGDRDRWYTAEEA 181

Query: 196 CDWGVVDKVLM 206
            D+G++D+++ 
Sbjct: 182 KDYGLIDEIIT 192


>gi|50843047|ref|YP_056274.1| ATP-dependent Clp protease proteolytic subunit 1 [Propionibacterium
           acnes KPA171202]
 gi|282854724|ref|ZP_06264059.1| Clp protease [Propionibacterium acnes J139]
 gi|67460472|sp|Q6A7E9|CLPP2_PROAC RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|50840649|gb|AAT83316.1| ATP-dependent Clp protease proteolytic subunit 1 [Propionibacterium
           acnes KPA171202]
 gi|282582306|gb|EFB87688.1| Clp protease [Propionibacterium acnes J139]
          Length = 212

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 86/188 (45%), Positives = 126/188 (67%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G+  M   +T     + ++Y  LL+ RIVF+  +++D  A  +CAQ+L L AE+P+ +I 
Sbjct: 11  GMPAMAGPETGGAGMTDNVYQSLLRNRIVFLGSEVKDENANALCAQMLLLNAEDPEADIY 70

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VT GMAIYDTMQ+I   ++T  MG AASMG  LL+AG  G R+ALP+A+IL
Sbjct: 71  LYINSPGGSVTGGMAIYDTMQWISNDVATVTMGMAASMGQFLLTAGTPGKRYALPHAKIL 130

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  G A++I  +A+ +   KR L+++   + G T E++ +  DRDH  +A EA 
Sbjct: 131 MHQPLGGVGGTATEIAINAKMLKDTKRELSQLNADHSGHTLEQILEDSDRDHWFTAQEAL 190

Query: 197 DWGVVDKV 204
           ++G++D V
Sbjct: 191 EYGLIDHV 198


>gi|284052219|ref|ZP_06382429.1| ATP-dependent Clp protease proteolytic subunit [Arthrospira
           platensis str. Paraca]
          Length = 183

 Score =  229 bits (584), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 95/183 (51%), Positives = 134/183 (73%), Gaps = 1/183 (0%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
            + +  VP  +  +   E+   IY RL +ERI+F++ +++D +A  I A +L+L++E+P 
Sbjct: 2   PIGVPSVPYRLPGSTY-EQWIGIYERLFRERIIFLSEEVDDGIANAIVAYMLYLDSEDPS 60

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K I LYINSPGG VTAGMAIYDTMQ+IK  + T C+G AASMG+ LL+AG KG R ALPN
Sbjct: 61  KPIYLYINSPGGSVTAGMAIYDTMQYIKSDVVTICVGMAASMGAFLLAAGTKGKRLALPN 120

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           ARI++HQP GG  GQA+DIE  A++I++I++ LNE+  +  G+T E++EK  DRD+ MSA
Sbjct: 121 ARIMIHQPLGGTRGQATDIEIEAKEILRIRKVLNEMLAERSGQTLEKIEKDTDRDYFMSA 180

Query: 193 SEA 195
           +EA
Sbjct: 181 AEA 183


>gi|239941128|ref|ZP_04693065.1| putative ATP-dependent Clp protease proteolytic subunit 1
           [Streptomyces roseosporus NRRL 15998]
 gi|239987606|ref|ZP_04708270.1| putative ATP-dependent Clp protease proteolytic subunit 1
           [Streptomyces roseosporus NRRL 11379]
 gi|291444569|ref|ZP_06583959.1| ATP-dependent Clp protease proteolytic subunit 1 [Streptomyces
           roseosporus NRRL 15998]
 gi|291347516|gb|EFE74420.1| ATP-dependent Clp protease proteolytic subunit 1 [Streptomyces
           roseosporus NRRL 15998]
          Length = 205

 Score =  229 bits (584), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 91/191 (47%), Positives = 125/191 (65%), Gaps = 2/191 (1%)

Query: 17  GLVPMVVEQTNRGERSYD-IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
            L+P    + + G    D +YSRLL ERI+F+  Q++D +A  I AQLL L A+ P K+I
Sbjct: 3   NLMPYAAGEPSLGGGLGDQVYSRLLGERIIFLGQQVDDDIANKITAQLLLLAAD-PDKDI 61

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMA+YDTMQ+I   + T  MG AASMG  LL+ G  G RFALPN  I
Sbjct: 62  YLYINSPGGSVTAGMAVYDTMQYIPNDVVTIGMGMAASMGQFLLTGGASGKRFALPNTDI 121

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQ S G  G ASDI+  A+ +++ K R+ EI   + G+T E + +  DRD   +A EA
Sbjct: 122 LMHQGSAGIGGTASDIKIQAEYLLRTKTRMAEITAHHSGQTVETIIRDGDRDRWYTAEEA 181

Query: 196 CDWGVVDKVLM 206
            ++G++D+++ 
Sbjct: 182 KEYGLIDEIIT 192


>gi|15672655|ref|NP_266829.1| ATP-dependent Clp protease proteolytic subunit [Lactococcus lactis
           subsp. lactis Il1403]
 gi|281491135|ref|YP_003353115.1| ATP-dependent endopeptidase Clp proteolytic subunit ClpP
           [Lactococcus lactis subsp. lactis KF147]
 gi|18202801|sp|Q9CHQ3|CLPP_LACLA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|12723580|gb|AAK04771.1|AE006300_6 ATP-dependent Clp protease proteolytic subunit [Lactococcus lactis
           subsp. lactis Il1403]
 gi|281374885|gb|ADA64404.1| ATP-dependent endopeptidase Clp, proteolytic subunit ClpP
           [Lactococcus lactis subsp. lactis KF147]
 gi|326406161|gb|ADZ63232.1| ATP-dependent Clp protease, protease subunit [Lactococcus lactis
           subsp. lactis CV56]
          Length = 199

 Score =  229 bits (584), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 95/192 (49%), Positives = 137/192 (71%), Gaps = 2/192 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+EQ++RGER+YDIYSRLLK+RI+ +TG +ED MA  I AQLLFL+A++  K+I L
Sbjct: 4   LVPTVIEQSSRGERAYDIYSRLLKDRIIMLTGPVEDGMANSIIAQLLFLDAQDNTKDIYL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  L+
Sbjct: 64  YVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYLI 123

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K ++RL +I   N  ++ E++ K  +RDH M A E 
Sbjct: 124 HQPMGGTGQGTQQTDMAIVAEQLLKTRKRLEQILADNSNRSLEQIHKDAERDHWMDAKET 183

Query: 196 CDWGVVDKVLMS 207
            ++G +D+++ +
Sbjct: 184 LEYGFIDEIMEN 195


>gi|225680955|gb|EEH19239.1| ATP-dependent Clp protease proteolytic subunit [Paracoccidioides
           brasiliensis Pb03]
          Length = 235

 Score =  229 bits (584), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 93/171 (54%), Positives = 133/171 (77%), Gaps = 2/171 (1%)

Query: 42  ERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP 101
           ERIV + G++++ ++  I AQLLFLEA+NP+K I LYINSPGG VTAG+A+YDTM +I  
Sbjct: 45  ERIVCLNGEVDETLSASIVAQLLFLEADNPEKPIHLYINSPGGSVTAGLAVYDTMTYISA 104

Query: 102 PISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKI 161
           P+ST C+GQAASMGSLLL  G  G RF LP++ +++HQPSGG+ GQA+DI  HA++I+++
Sbjct: 105 PVSTICVGQAASMGSLLLCGGHPGKRFCLPHSSVMVHQPSGGYFGQATDIAIHAKEILRV 164

Query: 162 KRRLNEIYVKNCGK--TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           +R+LNEIY ++  K  + +E+EK ++RD+ M A EA + G+VD++L  RI 
Sbjct: 165 RRQLNEIYKRHLKKEMSLDEIEKWMERDYFMGAKEALEMGIVDEILDRRIK 215


>gi|297562336|ref|YP_003681310.1| endopeptidase Clp [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
 gi|296846784|gb|ADH68804.1| Endopeptidase Clp [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
          Length = 210

 Score =  229 bits (584), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 89/210 (42%), Positives = 135/210 (64%), Gaps = 10/210 (4%)

Query: 2   SFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICA 61
           +FE   + D+      + P+ +EQT +         RLL++RIVF+  Q++D +A  +  
Sbjct: 4   TFEESPRFDARTSETQISPL-LEQTPQ---------RLLRQRIVFLGQQVDDEIANRLVG 53

Query: 62  QLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSA 121
           +LL L AE+ Q++I++YINSPGG VTAGMAIYD MQ+I   + T  +G AASMG +LL A
Sbjct: 54  ELLLLSAEDRQRDITMYINSPGGSVTAGMAIYDVMQYIPNDVRTVGIGMAASMGQMLLCA 113

Query: 122 GEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVE 181
           G  G R+ALP+ R+++HQPSGG  G ASDI   A  ++ +K+   E   ++ G+T E++E
Sbjct: 114 GAPGKRYALPHTRVMMHQPSGGIGGTASDIRILADQLLYVKKMFIEKISEHTGQTVEQIE 173

Query: 182 KTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           K  DRD   +A E+ ++G +D+VL   +D+
Sbjct: 174 KDADRDRWFTAKESKEYGFIDEVLEGTLDV 203


>gi|15864561|emb|CAC80640.1| ClpP putative protein [Brassica napus]
          Length = 313

 Score =  229 bits (584), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 73/176 (41%), Positives = 123/176 (69%)

Query: 31  RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGM 90
              D  + LL++RIVF+  Q++D  A L+ +QLL L+A++ +++I+L+INSPGG +TAGM
Sbjct: 86  EELDTTNMLLRQRIVFLGSQVDDMTADLVISQLLLLDAQDSERDITLFINSPGGSITAGM 145

Query: 91  AIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASD 150
            IYD M+  K  +ST C+G AASMG+ LL++G KG R+ +PN+++++HQP G   G+A++
Sbjct: 146 GIYDAMKQCKADVSTVCLGLAASMGAFLLASGSKGKRYCMPNSKVMIHQPLGSAGGKATE 205

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           +    ++++  K +LN+I+ +  GK   E+E   DRD+ ++  EA ++G+VD V+ 
Sbjct: 206 MSIRVREMMYHKIKLNKIFSRITGKPESEIEGDTDRDYFLNPWEAKEYGLVDAVID 261


>gi|7657879|emb|CAB89185.1| ClpP [Brassica napus var. napus]
          Length = 313

 Score =  228 bits (583), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 73/176 (41%), Positives = 123/176 (69%)

Query: 31  RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGM 90
              D  + LL++RIVF+  Q++D  A L+ +QLL L+A++ +++I+L+INSPGG +TAGM
Sbjct: 86  EELDTTNMLLRQRIVFLGSQVDDMTADLVISQLLLLDAQDSERDITLFINSPGGSITAGM 145

Query: 91  AIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASD 150
            IYD M+  K  +ST C+G AASMG+ LL++G KG R+ +PN+++++HQP G   G+A++
Sbjct: 146 GIYDAMKQCKADVSTVCLGLAASMGAFLLASGSKGKRYCMPNSKVMIHQPLGSAGGKATE 205

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           +    ++++  K +LN+I+ +  GK   E+E   DRD+ ++  EA ++G+VD V+ 
Sbjct: 206 MSIRVREMMYHKIKLNKIFSRITGKPESEIEGDTDRDYFLNPWEAKEYGLVDAVID 261


>gi|325104589|ref|YP_004274243.1| Endopeptidase Clp [Pedobacter saltans DSM 12145]
 gi|324973437|gb|ADY52421.1| Endopeptidase Clp [Pedobacter saltans DSM 12145]
          Length = 246

 Score =  228 bits (583), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 91/189 (48%), Positives = 137/189 (72%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            + P ++E+        D++SRL+ +RI+F+   I D  A +I AQLLFL++ + +++I 
Sbjct: 49  SMTPYIIEERQLNVAQMDVFSRLMMDRIIFLGDAIYDQNANIIQAQLLFLQSTDAKRDIQ 108

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG V AG+ IYDTMQFI P ++T C G AASMG++L+ AG KG R ALP+ARI+
Sbjct: 109 IYINSPGGSVYAGLGIYDTMQFISPDVATICTGMAASMGAVLMCAGAKGKRAALPHARIM 168

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  G A+D+E + ++++K+K+ L +I  K+ G++YE VE++ DRD+ M A EA 
Sbjct: 169 IHQPSGGAQGVAADMEINLREMLKLKQELYDIISKHSGQSYEWVERSSDRDYWMKAEEAK 228

Query: 197 DWGVVDKVL 205
            +G+VD+VL
Sbjct: 229 HYGMVDEVL 237


>gi|296876039|ref|ZP_06900095.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           parasanguinis ATCC 15912]
 gi|296432950|gb|EFH18741.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           parasanguinis ATCC 15912]
          Length = 196

 Score =  228 bits (583), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 95/192 (49%), Positives = 137/192 (71%), Gaps = 2/192 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ VTG +ED MA  I AQLLFL+A++  K+I +
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMVTGPVEDQMANSIIAQLLFLDAQDNTKDIYM 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YIN+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YINTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K +  L +I   N G++ E+V    +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRNNLEKILANNSGQSIEKVHADAERDNWMSAQET 180

Query: 196 CDWGVVDKVLMS 207
            ++G +D+++ +
Sbjct: 181 LEYGFIDEIMAN 192


>gi|312868210|ref|ZP_07728410.1| endopeptidase Clp [Streptococcus parasanguinis F0405]
 gi|311095955|gb|EFQ54199.1| endopeptidase Clp [Streptococcus parasanguinis F0405]
          Length = 196

 Score =  228 bits (583), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 94/192 (48%), Positives = 139/192 (72%), Gaps = 2/192 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ VTG +ED MA  I AQLLFL+A++  K+I +
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMVTGPVEDQMANSIIAQLLFLDAQDNTKDIYM 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YIN+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YINTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+   A+ ++K +  L +I  +N G++ ++V    +RD+ MSA E 
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLKTRNNLEKILAENSGQSIKKVHADAERDNWMSAQET 180

Query: 196 CDWGVVDKVLMS 207
            ++G +D+++++
Sbjct: 181 LEYGFIDEIMVN 192


>gi|311900309|dbj|BAJ32717.1| putative ATP-dependent Clp protease proteolytic subunit
           [Kitasatospora setae KM-6054]
          Length = 212

 Score =  228 bits (583), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 91/190 (47%), Positives = 123/190 (64%)

Query: 26  TNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV 85
           T  G     + + LL  RIV +  Q++D  A  +CAQLL L AE+P+ +ISLYINSPGG 
Sbjct: 16  TASGPFDDHLAALLLARRIVLLGTQVDDVSANRVCAQLLLLSAEDPRTDISLYINSPGGS 75

Query: 86  VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS 145
           VTAG+AIYDTM+ I   +ST  MG AASMG  LL+ G  G RFALPNARI++HQPS G  
Sbjct: 76  VTAGLAIYDTMRLIPNDVSTLAMGFAASMGQFLLTVGAPGKRFALPNARIMMHQPSAGIG 135

Query: 146 GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           G ASDIE  A+++   KR +  I   + G++ E + +  DRD   +A +A ++G+VD+VL
Sbjct: 136 GTASDIEIQAENLEYTKRAIERITAAHTGQSEETIARDGDRDRWFTAEQAREYGMVDRVL 195

Query: 206 MSRIDIEEKS 215
            S  ++   S
Sbjct: 196 ESLAEVGSAS 205


>gi|297194374|ref|ZP_06911772.1| ATP-dependent Clp protease proteolytic subunit 1 [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197720968|gb|EDY64876.1| ATP-dependent Clp protease proteolytic subunit 1 [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 205

 Score =  228 bits (583), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 90/191 (47%), Positives = 127/191 (66%), Gaps = 2/191 (1%)

Query: 17  GLVPMVVEQTNRGERSYD-IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
            L+P    + + G    D +YSRLL ERI+F+  Q++D +A  I AQ+L L A+ P K+I
Sbjct: 3   NLMPYAAGEPSIGGGLGDQVYSRLLGERIIFLGQQVDDDIANKITAQMLLLAAD-PDKDI 61

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMA+YDTMQ+I   + T  MG AASMG  LL+ G  G RFALPN  I
Sbjct: 62  YLYINSPGGSVTAGMAVYDTMQYIPNDVVTIGMGMAASMGQFLLTGGAAGKRFALPNTDI 121

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQ S G  G ASDI+  A+ +++ K+R+ EI  ++ G+T E + +  DRD   +A EA
Sbjct: 122 LMHQGSAGLGGTASDIKIQAEYLLRTKKRMAEITAQHSGQTVETIIRDGDRDRWFTADEA 181

Query: 196 CDWGVVDKVLM 206
            ++G++D+++ 
Sbjct: 182 KEYGLIDEIIS 192


>gi|108796955|ref|YP_636255.1| ATP-dependent Clp protease proteolytic subunit [Pseudendoclonium
           akinetum]
 gi|122217843|sp|Q3ZJ12|CLPP_PSEAK RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|56159653|gb|AAV80677.1| proteolytic subunit 2 of clp protease [Pseudendoclonium akinetum]
          Length = 198

 Score =  228 bits (583), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 78/191 (40%), Positives = 126/191 (65%), Gaps = 2/191 (1%)

Query: 19  VPMVVEQTNRGE--RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+RL +ER++F+   ++D +A  +   +L+L AE+  K I 
Sbjct: 5   VPKVPYRLAGNEVAEWVDLYNRLYRERVLFLCQDLDDELANQLIGIMLYLNAEDKSKGIY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VT G+ ++D M +IK  ++T C+G AASM S +L+ G KG R ALP++RI+
Sbjct: 65  VYINSPGGSVTCGVGVFDAMNYIKSDVTTICVGTAASMASFVLAGGRKGKRLALPHSRIM 124

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQAS +   ++++++I+  + +IY +  G+T E + + ++RD  MSA EA 
Sbjct: 125 IHQPEGGSQGQASVVLSESEEVLRIRDEVAQIYSERTGQTLERISRDMNRDQFMSAREAK 184

Query: 197 DWGVVDKVLMS 207
           D+G+VD++  S
Sbjct: 185 DYGLVDQIASS 195


>gi|260780695|ref|YP_003227081.1| ATP-dependent Clp protease proteolytic subunit [Bryopsis hypnoides]
 gi|260176773|gb|ACX33782.1| ATP-dependent Clp protease proteolytic subunit [Bryopsis hypnoides]
          Length = 199

 Score =  228 bits (583), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 74/187 (39%), Positives = 124/187 (66%), Gaps = 2/187 (1%)

Query: 19  VPMVVEQTNRGE--RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +       +  D+Y+RL +ER++F+   ++D +A  +   +L+L AE   K++ 
Sbjct: 5   VPKVPFRLPGEPSAQWVDLYNRLYRERVLFLCQDLDDELANQLIGIMLYLNAEEKAKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VT G+A+YD M +IK  ++T C+G AASM S +L+ G +G R A P++RI+
Sbjct: 65  IYINSPGGSVTCGIAVYDIMNYIKSDVTTICVGTAASMASFILAGGCRGKRIAFPHSRIM 124

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQAS++   ++++++I+R++ +IY +  G+T   + + +DRD  +SA EA 
Sbjct: 125 IHQPEGGSQGQASEVLSESEEVMRIRRQVGQIYAERTGQTLSRISRDMDRDQFLSAQEAK 184

Query: 197 DWGVVDK 203
            +G+VD 
Sbjct: 185 KYGLVDH 191


>gi|291298892|ref|YP_003510170.1| endopeptidase Clp [Stackebrandtia nassauensis DSM 44728]
 gi|290568112|gb|ADD41077.1| Endopeptidase Clp [Stackebrandtia nassauensis DSM 44728]
          Length = 207

 Score =  228 bits (583), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 85/172 (49%), Positives = 120/172 (69%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +++RLLKERIVF+  ++   +A  + AQLL L A++P+++I+LYINSPGG V  GMAIYD
Sbjct: 23  VFNRLLKERIVFMGTEVNSQVANRVSAQLLLLAADDPERDINLYINSPGGSVYDGMAIYD 82

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQFI   ++T  MG AASMG LLL AG  G R+ALP+ARI++HQPSGG  G ASD+   
Sbjct: 83  TMQFISNDVATIAMGMAASMGQLLLCAGTPGKRYALPHARIMMHQPSGGIGGTASDVAIL 142

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           A+ +   K+   E    + G+T +E+E+  DRD   +A EA ++G +D+V+ 
Sbjct: 143 AEQMAYTKKMFQERVSTHTGRTLDEIERDSDRDRWFTAEEAKEYGFIDQVIT 194


>gi|326475380|gb|EGD99389.1| ATP-dependent Clp protease [Trichophyton tonsurans CBS 112818]
          Length = 246

 Score =  228 bits (583), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 96/177 (54%), Positives = 138/177 (77%), Gaps = 3/177 (1%)

Query: 42  ERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP 101
           ERIV + G++++ ++  I AQLLFLEA+NP+K I LYINSPGG VTAG+AIYDTM +I+ 
Sbjct: 67  ERIVCLNGEVDETLSAAIVAQLLFLEADNPEKPIQLYINSPGGSVTAGLAIYDTMTYIQS 126

Query: 102 PISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKI 161
           P+ST C+GQAASMGSLLL  GE G R+ LP++ +++HQPSGG+ GQA+DI  HA++I+++
Sbjct: 127 PVSTICVGQAASMGSLLLCGGEAGKRYCLPHSSVMIHQPSGGYFGQATDIAIHAKEILRV 186

Query: 162 KRRLNEIYVKN-CGK--TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
           + +LN+IY ++  GK  T EE+EK ++RD+ M A EA + G+VD +L  R+  +E+S
Sbjct: 187 RHQLNQIYKRHLTGKEMTLEEIEKLMERDYFMGAKEALEMGIVDSILDRRMPSKEES 243


>gi|254798629|ref|YP_003058293.1| proteolytic subunit 2 of clp protease [Parachlorella kessleri]
 gi|229915577|gb|ACQ90920.1| proteolytic subunit 2 of clp protease [Parachlorella kessleri]
          Length = 202

 Score =  228 bits (583), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 78/188 (41%), Positives = 124/188 (65%), Gaps = 2/188 (1%)

Query: 19  VPMVVEQTNRGE--RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +       +  D+Y+RL +ER++F+ G+++D +A  +   +L+L AE   K I 
Sbjct: 5   VPKVPFRLPGEPAAQWVDLYNRLYRERVLFLCGELDDELANQLIGIMLYLNAEEKNKGIY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VT G+A+YD M +IK  ++T C+G AASM S +L+ G  G R ALP++RI+
Sbjct: 65  IYINSPGGSVTCGIAVYDAMNYIKSEVTTICVGTAASMASFILAGGAYGKRIALPHSRIM 124

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQAS++   +Q++++I+R +  IY +  G+    + + +DRD  MSA E  
Sbjct: 125 IHQPEGGSQGQASEVLSESQEVMRIRREVGRIYAERTGQPLSRISRDMDRDQFMSARETK 184

Query: 197 DWGVVDKV 204
           ++G+VD+V
Sbjct: 185 EYGIVDQV 192


>gi|120404994|ref|YP_954823.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           vanbaalenii PYR-1]
 gi|119957812|gb|ABM14817.1| ATP-dependent Clp protease proteolytic subunit ClpP [Mycobacterium
           vanbaalenii PYR-1]
          Length = 194

 Score =  228 bits (583), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 86/173 (49%), Positives = 119/173 (68%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL ERI+F+  Q++D +A  +CAQ+L L AE+P K+I LYINSPGG ++AGMAIYD
Sbjct: 14  VYERLLSERIIFLGSQVDDDIANRLCAQILLLSAEDPTKDIHLYINSPGGSISAGMAIYD 73

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM      ++T+ MG AASMG  LL+AG KG R+ALP+ARIL+HQP GG +G A+DI   
Sbjct: 74  TMVLAPCDVATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGITGGAADIAIQ 133

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+    IK+ +  +  +  G+T E +E   DRD   +A EA ++G VD ++ S
Sbjct: 134 AEQFAVIKKEMFRLNAEFTGQTIERIEADSDRDRWFTAQEALEYGFVDHIITS 186


>gi|61680536|pdb|1Y7O|A Chain A, The Structure Of Streptococcus Pneumoniae A153p Clpp
 gi|61680537|pdb|1Y7O|B Chain B, The Structure Of Streptococcus Pneumoniae A153p Clpp
 gi|61680538|pdb|1Y7O|C Chain C, The Structure Of Streptococcus Pneumoniae A153p Clpp
 gi|61680539|pdb|1Y7O|D Chain D, The Structure Of Streptococcus Pneumoniae A153p Clpp
 gi|61680540|pdb|1Y7O|E Chain E, The Structure Of Streptococcus Pneumoniae A153p Clpp
 gi|61680541|pdb|1Y7O|F Chain F, The Structure Of Streptococcus Pneumoniae A153p Clpp
 gi|61680542|pdb|1Y7O|G Chain G, The Structure Of Streptococcus Pneumoniae A153p Clpp
          Length = 218

 Score =  228 bits (582), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 87/189 (46%), Positives = 130/189 (68%), Gaps = 2/189 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+ A  + AQLLFL+A++  K+I L
Sbjct: 21  MIPVVIEQTSRGERSYDIYSRLLKDRIIXLTGPVEDNXANSVIAQLLFLDAQDSTKDIYL 80

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DT  FIK  + T   G AAS G+++ S+G KG RF LPNA   +
Sbjct: 81  YVNTPGGSVSAGLAIVDTXNFIKADVQTIVXGXAASXGTVIASSGAKGKRFXLPNAEYXI 140

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP    G   Q +D+    + ++K +  L +I  +N G++ E+V    +RD+  SA E 
Sbjct: 141 HQPXGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSXEKVHADAERDNWXSAQET 200

Query: 196 CDWGVVDKV 204
            ++G +D++
Sbjct: 201 LEYGFIDEI 209


>gi|289426380|ref|ZP_06428123.1| Clp protease [Propionibacterium acnes SK187]
 gi|289153108|gb|EFD01826.1| Clp protease [Propionibacterium acnes SK187]
          Length = 198

 Score =  228 bits (582), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 85/184 (46%), Positives = 124/184 (67%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           M   +T     + ++Y  LL+ RIVF+  +++D  A  +CAQ+L L AE+P+ +I LYIN
Sbjct: 1   MAGPETGGAGMTDNVYQSLLRNRIVFLGSEVKDENANALCAQMLLLNAEDPEADIYLYIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGG VT GMAIYDTMQ+I   ++T  MG AASMG  LL+AG  G R+ALP+A+IL+HQP
Sbjct: 61  SPGGSVTGGMAIYDTMQWISNDVATVTMGMAASMGQFLLTAGTPGKRYALPHAKILMHQP 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            GG  G A++I  +A+ +   KR L+++   + G T E++ +  DRDH  +A EA ++G+
Sbjct: 121 LGGVGGTATEIAINAKMLKDTKRELSQLNADHSGHTLEQILEDSDRDHWFTAQEALEYGL 180

Query: 201 VDKV 204
           +D V
Sbjct: 181 IDHV 184


>gi|32476642|ref|NP_869636.1| ATP-dependent Clp protease proteolytic subunit [Rhodopirellula
           baltica SH 1]
 gi|67460513|sp|Q7UK67|CLPP1_RHOBA RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|32447188|emb|CAD77014.1| ATP-dependent clp protease proteolytic subunit [Rhodopirellula
           baltica SH 1]
          Length = 227

 Score =  228 bits (582), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 87/189 (46%), Positives = 129/189 (68%)

Query: 25  QTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG 84
           Q+ + +R   +   LL+ RIVF+ G+I    A  I  +LL+L++EN +K+I LYINSPGG
Sbjct: 36  QSYQRQRQMTLGDLLLENRIVFMQGEIHYANANEIVMKLLYLQSENRRKDIHLYINSPGG 95

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
            VTA +AIYDTMQ +  P++T+C+G+A S  ++LL  G KG RF LPN+R+++HQP GG 
Sbjct: 96  SVTATLAIYDTMQMLSCPVATYCVGEACSGAAVLLIGGAKGKRFCLPNSRVMMHQPLGGV 155

Query: 145 SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           SGQ SDIE  A ++ + + +LNEI   +CGK+ E++ K  DRD  + A +A ++G+VD +
Sbjct: 156 SGQVSDIEIQAAEMFRYRDKLNEIISSHCGKSVEQIAKDTDRDFFLDAQQAKEYGLVDDL 215

Query: 205 LMSRIDIEE 213
           L+     EE
Sbjct: 216 LLGTPASEE 224


>gi|256832188|ref|YP_003160915.1| Endopeptidase Clp [Jonesia denitrificans DSM 20603]
 gi|256685719|gb|ACV08612.1| Endopeptidase Clp [Jonesia denitrificans DSM 20603]
          Length = 235

 Score =  228 bits (582), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 91/194 (46%), Positives = 132/194 (68%), Gaps = 2/194 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++RI+F+  Q++D  A  + AQLL LE++ P ++I L
Sbjct: 33  VLPQFEERTAYGFKRQDPYTKLFEDRIIFLGVQVDDASADDVMAQLLVLESQEPNRDIIL 92

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+I   + T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 93  YINSPGGSFTAMTAIYDTMQYITSEVQTVCLGQAASSAAVLLAAGSPGKRLALPNARVLI 152

Query: 138 HQPSGGFSG--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQPS    G  QASDIE HA +I++++  L +    + GK  +E+   ++RD I+SA EA
Sbjct: 153 HQPSLSGGGYAQASDIEIHANEILRMREWLEDTLAVHTGKPIDEIRTDIERDKILSAQEA 212

Query: 196 CDWGVVDKVLMSRI 209
            ++G+VD+VL SR 
Sbjct: 213 VEYGLVDQVLESRK 226


>gi|119717699|ref|YP_924664.1| ClpP1 peptidase. Serine peptidase. MEROPS family S14 [Nocardioides
           sp. JS614]
 gi|119538360|gb|ABL82977.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nocardioides
           sp. JS614]
          Length = 195

 Score =  228 bits (582), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 92/182 (50%), Positives = 126/182 (69%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IY RLL+ERIVF+  ++ D  A  ICAQLL L AE+P+ +I L+INSPGG V AGMAIYD
Sbjct: 8   IYQRLLRERIVFLGSEVRDQNANAICAQLLLLSAEDPEADIFLHINSPGGSVDAGMAIYD 67

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM +I   ++T  MG AASMG  LL AG KG R+ALP+ARI++HQPS G  G ASDI+  
Sbjct: 68  TMNYIPNDVATVGMGLAASMGQFLLCAGTKGKRYALPHARIMMHQPSSGMGGSASDIKIQ 127

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           AQ  + IK+ L E+  ++ G+T E++E   DRD   +A +A ++G+VD+V+ S  +  + 
Sbjct: 128 AQQSLHIKKVLLELIAEHTGQTVEQIEMDADRDRWFTADQAKEYGLVDQVIKSAREAADD 187

Query: 215 SK 216
            +
Sbjct: 188 GR 189


>gi|126640549|ref|YP_001083533.1| ATP-dependent Clp protease proteolytic subunit [Acinetobacter
           baumannii ATCC 17978]
          Length = 155

 Score =  228 bits (582), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 96/155 (61%), Positives = 122/155 (78%)

Query: 55  MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASM 114
           MA LI AQ+LFLEAENP K+I LYINSPGG VTAGMAIYDTMQFIKP + T+CMGQAASM
Sbjct: 1   MANLIVAQMLFLEAENPDKDIHLYINSPGGSVTAGMAIYDTMQFIKPDVVTYCMGQAASM 60

Query: 115 GSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCG 174
           G+ LL+AG KG R+ L NAR+++HQP GGF GQASDIE HA++I+ IK RLN +  ++ G
Sbjct: 61  GAFLLNAGAKGKRYCLENARVMIHQPLGGFRGQASDIEIHAREILFIKERLNRLMAEHSG 120

Query: 175 KTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           + Y+ + +  DRD+ M+A  A ++G+VD+VL  R 
Sbjct: 121 QDYDTIARDTDRDNFMTAQAAKEYGLVDQVLSKRP 155


>gi|89893323|ref|YP_516810.1| hypothetical protein DSY0577 [Desulfitobacterium hafniense Y51]
 gi|219666595|ref|YP_002457030.1| ATP-dependent Clp protease proteolytic subunit [Desulfitobacterium
           hafniense DCB-2]
 gi|116243100|sp|Q250C6|CLPP1_DESHY RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|89332771|dbj|BAE82366.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219536855|gb|ACL18594.1| Endopeptidase Clp [Desulfitobacterium hafniense DCB-2]
          Length = 193

 Score =  228 bits (582), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 99/190 (52%), Positives = 140/190 (73%), Gaps = 2/190 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMV+EQT+RGERS DI+SRLL +R+V + G + +  A+LI AQ+LFLE+ +  K+I  
Sbjct: 4   LVPMVIEQTSRGERSCDIFSRLLNDRVVMLNGMVTNESASLIIAQMLFLESADCDKDIHF 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VT G+AI DTM +IK  +ST  +GQ+ S  SLLL+AG KG RFAL N+ +L+
Sbjct: 64  YINSPGGSVTDGLAIMDTMNYIKCDVSTISIGQSGSAASLLLAAGAKGKRFALANSEVLI 123

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQ +DI+ H+  + K K +LNE Y +  G+  E+++K ++RD+ M+A +A
Sbjct: 124 HQPSISGGLQGQTTDIKIHSDWLTKTKEKLNETYSRLTGQPLEKIQKDMERDYYMTAGQA 183

Query: 196 CDWGVVDKVL 205
            D+G++DK+L
Sbjct: 184 QDYGLIDKIL 193


>gi|256787753|ref|ZP_05526184.1| ATP dependent Clp protease proteolytic subunit 1 [Streptomyces
           lividans TK24]
          Length = 201

 Score =  228 bits (582), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 93/182 (51%), Positives = 126/182 (69%), Gaps = 1/182 (0%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           E +  G     +Y+RLL ERI+F+   ++D +A  I AQLL L ++ P K+I LYINSPG
Sbjct: 7   EPSIGGGLGDQVYNRLLGERIIFLGQPVDDDIANKITAQLLLLASD-PDKDIFLYINSPG 65

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           G +TAGMAIYDTMQ+IK  + T  MG AASMG  LLSAG  G RFALPNA IL+HQPS G
Sbjct: 66  GSITAGMAIYDTMQYIKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAG 125

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            +G ASDI+ HA+ ++  KRR+ E+  ++ G+T E++ +  DRD    A EA ++G++D 
Sbjct: 126 LAGSASDIKIHAERLLHTKRRMAELTSQHTGQTIEQITRDSDRDRWFDAFEAKEYGLIDD 185

Query: 204 VL 205
           V+
Sbjct: 186 VI 187


>gi|148272644|ref|YP_001222205.1| ATP-dependent Clp protease proteolytic subunit [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147830574|emb|CAN01509.1| ATP-dependent protease, proteolytic subunit [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 195

 Score =  228 bits (582), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 91/177 (51%), Positives = 124/177 (70%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           ++ RLLK+RI+++  ++ D  A  ICA++L L AE+ +K+I LYINSPGG +TAGMAIYD
Sbjct: 10  VFDRLLKDRIIWLGSEVRDDNANEICAKILLLAAEDSEKDIFLYINSPGGSITAGMAIYD 69

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQF+   I T  +G AASMG LLL++G KG R+  PNAR+LLHQP GGF G +SDI+  
Sbjct: 70  TMQFVPNDIVTVGIGMAASMGQLLLTSGTKGKRYITPNARVLLHQPHGGFGGTSSDIQTQ 129

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           AQ I+ +K+RL EI     GKT E++ +  DRD   +A EA ++G VD +  S  D+
Sbjct: 130 AQLILSMKQRLAEITAGQTGKTAEQINEDGDRDRWFTAQEALEYGFVDHIRESATDV 186


>gi|108800544|ref|YP_640741.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium sp.
           MCS]
 gi|119869683|ref|YP_939635.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium sp.
           KMS]
 gi|126436160|ref|YP_001071851.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium sp.
           JLS]
 gi|108770963|gb|ABG09685.1| ATP-dependent Clp protease proteolytic subunit ClpP [Mycobacterium
           sp. MCS]
 gi|119695772|gb|ABL92845.1| ATP-dependent Clp protease proteolytic subunit ClpP / ClpP1
           peptidase, Serine peptidase, MEROPS family S14
           [Mycobacterium sp. KMS]
 gi|126235960|gb|ABN99360.1| ATP-dependent Clp protease proteolytic subunit ClpP [Mycobacterium
           sp. JLS]
          Length = 195

 Score =  228 bits (582), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 86/176 (48%), Positives = 119/176 (67%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
              +Y RLL ERI+F+  Q++D +A  +CAQ+L L AE+P K+I LYINSPGG ++AGMA
Sbjct: 11  QDSVYERLLAERIIFLGSQVDDDIANRLCAQILLLSAEDPTKDIHLYINSPGGSISAGMA 70

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYDTM      ++T+ MG AASMG  LL+AG KG R+ALP+ARIL+HQP GG +G A+DI
Sbjct: 71  IYDTMVLAPCDVATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGITGGAADI 130

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
              A+    IK+ +  +  +  G+T E +E   DRD   +A EA ++G VD ++ S
Sbjct: 131 AIQAEQFAAIKKEMFRLNAEFTGQTIERIEADSDRDRWFTAQEALEYGFVDHIITS 186


>gi|315501699|ref|YP_004080586.1| endopeptidase clp [Micromonospora sp. L5]
 gi|315408318|gb|ADU06435.1| Endopeptidase Clp [Micromonospora sp. L5]
          Length = 196

 Score =  228 bits (581), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 85/176 (48%), Positives = 129/176 (73%), Gaps = 1/176 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           ++ RLLKERI+F+  ++ D  A  ICAQ+L L AE+ +++I LYINSPGG V+AGMA+YD
Sbjct: 18  VFERLLKERIIFLGTEVTDASANQICAQILLLAAEDAERDIFLYINSPGGSVSAGMAVYD 77

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM+++K  ++T  +G A SMG  LL AG  G RFALP++RI++HQPSGG  G A+DI   
Sbjct: 78  TMRYVKNDVATLALGMAGSMGQFLLCAGAAGKRFALPHSRIMMHQPSGGMGGTAADITIQ 137

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           A++++ +KR + E+  ++ G+T EE+++  DRD   +A +A ++G+VD+VL  R+D
Sbjct: 138 AENMLHVKRTMQELIAQHSGRTLEEIQRDWDRDRWFTAEQAREYGLVDQVLT-RVD 192


>gi|18408572|ref|NP_564880.1| CLPP3; serine-type endopeptidase [Arabidopsis thaliana]
 gi|75314059|sp|Q9SXJ6|CLPP3_ARATH RecName: Full=ATP-dependent Clp protease proteolytic subunit 3,
           chloroplastic; AltName: Full=Endopeptidase ClpP3;
           Short=nClpP3; AltName: Full=nClpP4; Flags: Precursor
 gi|12322291|gb|AAG51173.1|AC079285_6 ATP-dependent Clp protease (nClpP3) [Arabidopsis thaliana]
 gi|12597762|gb|AAG60075.1|AC013288_9 ATP-dependent Clp protease (nClpP3) [Arabidopsis thaliana]
 gi|5360591|dbj|BAA82067.1| nClpP3 [Arabidopsis thaliana]
 gi|21592949|gb|AAM64899.1| ATP-dependent Clp protease proteolytic subunit ClpP3 [Arabidopsis
           thaliana]
 gi|332196422|gb|AEE34543.1| ATP-dependent Clp protease proteolytic subunit 3 [Arabidopsis
           thaliana]
          Length = 309

 Score =  228 bits (581), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 73/176 (41%), Positives = 123/176 (69%)

Query: 31  RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGM 90
              D  + LL++RIVF+  Q++D  A L+ +QLL L+AE+ +++I+L+INSPGG +TAGM
Sbjct: 82  EELDTTNMLLRQRIVFLGSQVDDMTADLVISQLLLLDAEDSERDITLFINSPGGSITAGM 141

Query: 91  AIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASD 150
            IYD M+  K  +ST C+G AASMG+ LL++G KG R+ +PN+++++HQP G   G+A++
Sbjct: 142 GIYDAMKQCKADVSTVCLGLAASMGAFLLASGSKGKRYCMPNSKVMIHQPLGTAGGKATE 201

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           +    ++++  K +LN+I+ +  GK   E+E   DRD+ ++  EA ++G++D V+ 
Sbjct: 202 MSIRIREMMYHKIKLNKIFSRITGKPESEIESDTDRDNFLNPWEAKEYGLIDAVID 257


>gi|4098214|gb|AAD09579.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter
           pylori]
          Length = 159

 Score =  228 bits (581), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 89/159 (55%), Positives = 123/159 (77%)

Query: 52  EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQA 111
            D +A+ I AQLLFLEAE+P+K+I LYINSPGGV+T+G++IYDTM FI+P +ST C+GQA
Sbjct: 1   NDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQA 60

Query: 112 ASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVK 171
           ASMG+ LLS G KG RF+LP++RI++HQP GG  GQASDIE  + +I+++K  +N I  +
Sbjct: 61  ASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQ 120

Query: 172 NCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           N G++ E++ K  DRD  MSA EA ++G++DKVL   + 
Sbjct: 121 NSGQSLEQIAKDTDRDFYMSAKEAKEYGLIDKVLQKNVK 159


>gi|302865150|ref|YP_003833787.1| endopeptidase Clp [Micromonospora aurantiaca ATCC 27029]
 gi|302568009|gb|ADL44211.1| Endopeptidase Clp [Micromonospora aurantiaca ATCC 27029]
          Length = 196

 Score =  228 bits (581), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 85/176 (48%), Positives = 129/176 (73%), Gaps = 1/176 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           ++ RLLKERI+F+  ++ D  A  ICAQ+L L AE+ +++I LYINSPGG V+AGMA+YD
Sbjct: 18  VFERLLKERIIFLGTEVTDASANQICAQILLLAAEDAERDIFLYINSPGGSVSAGMAVYD 77

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM+++K  ++T  +G A SMG  LL AG  G RFALP++RI++HQPSGG  G A+DI   
Sbjct: 78  TMRYVKNDVATLALGMAGSMGQFLLCAGAAGKRFALPHSRIMMHQPSGGMGGTAADITIQ 137

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           A++++ +KR + E+  ++ G+T EE+++  DRD   +A +A ++G+VD+VL  R+D
Sbjct: 138 AENMLHVKRTMQELIAQHSGRTLEEIQRDWDRDRWFTAEQAREYGLVDQVLT-RVD 192


>gi|297198068|ref|ZP_06915465.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sviceus ATCC 29083]
 gi|197714242|gb|EDY58276.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sviceus ATCC 29083]
          Length = 211

 Score =  228 bits (581), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 84/202 (41%), Positives = 134/202 (66%), Gaps = 2/202 (0%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
            +  +   ++P   E+T+ G++S D YS+LL+ERIVF+  QI+D  A  + AQ ++LE +
Sbjct: 1   MTRPIARYVLPEFHERTSFGQKSMDPYSKLLEERIVFLGTQIDDTSANDLMAQFMYLEYQ 60

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           +P ++I+LYINSPGG  +A  AIYDTMQ++   + T C+GQA S  ++LL+AG  G R  
Sbjct: 61  DPDRDIALYINSPGGSFSAMSAIYDTMQYVSCDVETTCLGQAGSSAAVLLAAGTPGKRSV 120

Query: 130 LPNARILLHQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           LP AR+++HQP  S    GQASD+   A ++++++ RL E+ V++ G++ E+V   ++RD
Sbjct: 121 LPGARVVIHQPALSEPVQGQASDLAIQADELLRVRARLEEMLVRHTGRSPEQVSADIERD 180

Query: 188 HIMSASEACDWGVVDKVLMSRI 209
            I+ A  A D G+ D ++ SR 
Sbjct: 181 RILDAQGALDHGLADAIVPSRK 202


>gi|282866711|ref|ZP_06275751.1| Endopeptidase Clp [Streptomyces sp. ACTE]
 gi|282558410|gb|EFB63972.1| Endopeptidase Clp [Streptomyces sp. ACTE]
          Length = 205

 Score =  228 bits (581), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 92/191 (48%), Positives = 126/191 (65%), Gaps = 2/191 (1%)

Query: 17  GLVPMVVEQTNRGERSYD-IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
            L+P+   + + G    D +YSRLL ERI+F+  Q++D +A  I AQLL L A+ P K+I
Sbjct: 3   NLMPLAAGEPSLGGGLGDQVYSRLLGERIIFLGQQVDDDIANKITAQLLLLAAD-PDKDI 61

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG VTAGMA+YDTMQ+I   + T  MG AASMG  LL+ G  G RFALPN  I
Sbjct: 62  YLYINSPGGSVTAGMAVYDTMQYIPNDVVTIGMGMAASMGQFLLTGGTAGKRFALPNTDI 121

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQ S G  G ASDI+  A+ +++ K R+ EI   + G+T E + +  DRD   +A EA
Sbjct: 122 LMHQGSAGIGGTASDIKIQAEYLLRTKTRMAEITAHHSGQTVETIIRDGDRDRWYTAEEA 181

Query: 196 CDWGVVDKVLM 206
            D+G++D+++ 
Sbjct: 182 KDYGLIDEIIT 192


>gi|323448447|gb|EGB04345.1| hypothetical protein AURANDRAFT_32730 [Aureococcus anophagefferens]
          Length = 197

 Score =  228 bits (581), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 88/189 (46%), Positives = 124/189 (65%), Gaps = 2/189 (1%)

Query: 19  VPMVVEQTNRGE--RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +          DIY+RL +ERI+F+  +I+D +A  I   +L+L++E+  K I 
Sbjct: 5   VPKVAYRVPGAPSADWIDIYNRLYRERIIFLGQEIDDELANQIIGVMLYLDSEDSTKPIY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYIN PGG V AG+AI+DTM  IK  + T  +G +ASM S LL  G KG R ALPN+R++
Sbjct: 65  LYINCPGGSVIAGLAIFDTMNHIKSKVVTINIGLSASMASFLLCGGTKGSRLALPNSRVM 124

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA DI+  A  I++IK  L ++Y    G+T +++   LDRD+ MSA EAC
Sbjct: 125 IHQPMGGAQGQAEDIKVEAAQIIRIKENLVKLYAMMTGQTQDQIILDLDRDNFMSAQEAC 184

Query: 197 DWGVVDKVL 205
           D+G++DKV+
Sbjct: 185 DYGIIDKVI 193


>gi|13899067|gb|AAK48955.1|AF370528_1 ATP-dependent Clp protease; nClpP3 [Arabidopsis thaliana]
 gi|18377550|gb|AAL66941.1| ATP-dependent Clp protease (nClpP3) [Arabidopsis thaliana]
          Length = 309

 Score =  228 bits (581), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 73/176 (41%), Positives = 123/176 (69%)

Query: 31  RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGM 90
              D  + LL++RIVF+  Q++D  A L+ +QLL L+AE+ +++I+L+INSPGG +TAGM
Sbjct: 82  EELDTTNMLLRQRIVFLGSQVDDMTADLVISQLLLLDAEDSERDITLFINSPGGSITAGM 141

Query: 91  AIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASD 150
            IYD M+  K  +ST C+G AASMG+ LL++G KG R+ +PN+++++HQP G   G+A++
Sbjct: 142 GIYDAMKQCKADVSTVCLGLAASMGAFLLASGSKGKRYCMPNSKVMIHQPLGTAGGKATE 201

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           +    ++++  K +LN+I+ +  GK   E+E   DRD+ ++  EA ++G++D V+ 
Sbjct: 202 MSIRIREMMYHKIKLNKIFSRITGKPESEIESDTDRDNFLNPWEAKEYGLIDAVID 257


>gi|297197434|ref|ZP_06914831.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sviceus ATCC 29083]
 gi|197716282|gb|EDY60316.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sviceus ATCC 29083]
          Length = 200

 Score =  228 bits (581), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 87/192 (45%), Positives = 134/192 (69%), Gaps = 1/192 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVE+T  GERS D++SRLL ERI+F+  +I+D +A ++ AQLL LE+  P+ EIS+Y
Sbjct: 6   IPYVVERTAHGERSSDVFSRLLSERIIFLGTEIDDGVANVVIAQLLHLESAAPENEISIY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  T+ MAIYDTM +++ PIST C+GQAAS  ++LL+ G+ G R  L +AR+LL 
Sbjct: 66  INSPGGSFTSLMAIYDTMTYVQAPISTLCVGQAASTAAVLLAGGDPGRRLVLEHARVLLG 125

Query: 139 QP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP +GG  G  SD+   A+++V+I+ ++ E+  ++       +   +DRD + +A EA +
Sbjct: 126 QPAAGGSRGAISDLALQAKEMVRIRSQVEEVLARHTHHDIATLRADMDRDKVFTAEEAVE 185

Query: 198 WGVVDKVLMSRI 209
           +G+ D+V+  R+
Sbjct: 186 YGLADEVVSRRL 197


>gi|289428692|ref|ZP_06430375.1| Clp protease [Propionibacterium acnes J165]
 gi|295131122|ref|YP_003581785.1| Clp protease [Propionibacterium acnes SK137]
 gi|289158090|gb|EFD06310.1| Clp protease [Propionibacterium acnes J165]
 gi|291375267|gb|ADD99121.1| Clp protease [Propionibacterium acnes SK137]
 gi|313763508|gb|EFS34872.1| Clp protease [Propionibacterium acnes HL013PA1]
 gi|313773445|gb|EFS39411.1| Clp protease [Propionibacterium acnes HL074PA1]
 gi|313793897|gb|EFS41921.1| Clp protease [Propionibacterium acnes HL110PA1]
 gi|313801288|gb|EFS42539.1| Clp protease [Propionibacterium acnes HL110PA2]
 gi|313808033|gb|EFS46514.1| Clp protease [Propionibacterium acnes HL087PA2]
 gi|313811498|gb|EFS49212.1| Clp protease [Propionibacterium acnes HL083PA1]
 gi|313813442|gb|EFS51156.1| Clp protease [Propionibacterium acnes HL025PA1]
 gi|313816690|gb|EFS54404.1| Clp protease [Propionibacterium acnes HL059PA1]
 gi|313819599|gb|EFS57313.1| Clp protease [Propionibacterium acnes HL046PA2]
 gi|313822076|gb|EFS59790.1| Clp protease [Propionibacterium acnes HL036PA1]
 gi|313823690|gb|EFS61404.1| Clp protease [Propionibacterium acnes HL036PA2]
 gi|313826014|gb|EFS63728.1| Clp protease [Propionibacterium acnes HL063PA1]
 gi|313829483|gb|EFS67197.1| Clp protease [Propionibacterium acnes HL063PA2]
 gi|313831239|gb|EFS68953.1| Clp protease [Propionibacterium acnes HL007PA1]
 gi|313834851|gb|EFS72565.1| Clp protease [Propionibacterium acnes HL056PA1]
 gi|313839989|gb|EFS77703.1| Clp protease [Propionibacterium acnes HL086PA1]
 gi|314914807|gb|EFS78638.1| Clp protease [Propionibacterium acnes HL005PA4]
 gi|314919377|gb|EFS83208.1| Clp protease [Propionibacterium acnes HL050PA1]
 gi|314920715|gb|EFS84546.1| Clp protease [Propionibacterium acnes HL050PA3]
 gi|314923825|gb|EFS87656.1| Clp protease [Propionibacterium acnes HL001PA1]
 gi|314924726|gb|EFS88557.1| Clp protease [Propionibacterium acnes HL036PA3]
 gi|314930595|gb|EFS94426.1| Clp protease [Propionibacterium acnes HL067PA1]
 gi|314954450|gb|EFS98856.1| Clp protease [Propionibacterium acnes HL027PA1]
 gi|314957523|gb|EFT01626.1| Clp protease [Propionibacterium acnes HL002PA1]
 gi|314961995|gb|EFT06096.1| Clp protease [Propionibacterium acnes HL002PA2]
 gi|314963748|gb|EFT07848.1| Clp protease [Propionibacterium acnes HL082PA1]
 gi|314966160|gb|EFT10259.1| Clp protease [Propionibacterium acnes HL082PA2]
 gi|314968425|gb|EFT12523.1| Clp protease [Propionibacterium acnes HL037PA1]
 gi|314976595|gb|EFT20690.1| Clp protease [Propionibacterium acnes HL045PA1]
 gi|314978950|gb|EFT23044.1| Clp protease [Propionibacterium acnes HL072PA2]
 gi|314982025|gb|EFT26118.1| Clp protease [Propionibacterium acnes HL110PA3]
 gi|314984414|gb|EFT28506.1| Clp protease [Propionibacterium acnes HL005PA1]
 gi|314986607|gb|EFT30699.1| Clp protease [Propionibacterium acnes HL005PA2]
 gi|314990964|gb|EFT35055.1| Clp protease [Propionibacterium acnes HL005PA3]
 gi|315079596|gb|EFT51589.1| Clp protease [Propionibacterium acnes HL053PA2]
 gi|315081175|gb|EFT53151.1| Clp protease [Propionibacterium acnes HL078PA1]
 gi|315083637|gb|EFT55613.1| Clp protease [Propionibacterium acnes HL027PA2]
 gi|315087057|gb|EFT59033.1| Clp protease [Propionibacterium acnes HL002PA3]
 gi|315089232|gb|EFT61208.1| Clp protease [Propionibacterium acnes HL072PA1]
 gi|315090839|gb|EFT62815.1| Clp protease [Propionibacterium acnes HL110PA4]
 gi|315095051|gb|EFT67027.1| Clp protease [Propionibacterium acnes HL060PA1]
 gi|315095254|gb|EFT67230.1| Clp protease [Propionibacterium acnes HL038PA1]
 gi|315099136|gb|EFT71112.1| Clp protease [Propionibacterium acnes HL059PA2]
 gi|315100381|gb|EFT72357.1| Clp protease [Propionibacterium acnes HL046PA1]
 gi|315104284|gb|EFT76260.1| Clp protease [Propionibacterium acnes HL050PA2]
 gi|315106804|gb|EFT78780.1| Clp protease [Propionibacterium acnes HL030PA1]
 gi|315108933|gb|EFT80909.1| Clp protease [Propionibacterium acnes HL030PA2]
 gi|327328170|gb|EGE69939.1| Clp protease [Propionibacterium acnes HL103PA1]
 gi|327328483|gb|EGE70245.1| Clp protease [Propionibacterium acnes HL096PA2]
 gi|327329651|gb|EGE71407.1| Clp protease [Propionibacterium acnes HL096PA3]
 gi|327334166|gb|EGE75880.1| Clp protease [Propionibacterium acnes HL097PA1]
 gi|327444270|gb|EGE90924.1| Clp protease [Propionibacterium acnes HL043PA2]
 gi|327444850|gb|EGE91504.1| Clp protease [Propionibacterium acnes HL043PA1]
 gi|327446336|gb|EGE92990.1| Clp protease [Propionibacterium acnes HL013PA2]
 gi|327452076|gb|EGE98730.1| Clp protease [Propionibacterium acnes HL092PA1]
 gi|327454887|gb|EGF01542.1| Clp protease [Propionibacterium acnes HL087PA3]
 gi|327457828|gb|EGF04483.1| Clp protease [Propionibacterium acnes HL083PA2]
 gi|328752325|gb|EGF65941.1| Clp protease [Propionibacterium acnes HL020PA1]
 gi|328755280|gb|EGF68896.1| Clp protease [Propionibacterium acnes HL087PA1]
 gi|328758239|gb|EGF71855.1| Clp protease [Propionibacterium acnes HL025PA2]
 gi|328760012|gb|EGF73595.1| Clp protease [Propionibacterium acnes HL099PA1]
          Length = 201

 Score =  228 bits (581), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 85/187 (45%), Positives = 125/187 (66%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +  M   +T     + ++Y  LL+ RIVF+  +++D  A  +CAQ+L L AE+P+ +I L
Sbjct: 1   MPAMAGPETGGAGMTDNVYQSLLRNRIVFLGSEVKDENANALCAQMLLLNAEDPEADIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VT GMAIYDTMQ+I   ++T  MG AASMG  LL+AG  G R+ALP+A+IL+
Sbjct: 61  YINSPGGSVTGGMAIYDTMQWISNDVATVTMGMAASMGQFLLTAGTPGKRYALPHAKILM 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  G A++I  +A+ +   KR L+++   + G T E++ +  DRDH  +A EA +
Sbjct: 121 HQPLGGVGGTATEIAINAKMLKDTKRELSQLNADHSGHTLEQILEDSDRDHWFTAQEALE 180

Query: 198 WGVVDKV 204
           +G++D V
Sbjct: 181 YGLIDHV 187


>gi|239917499|ref|YP_002957057.1| ATP-dependent Clp protease proteolytic subunit ClpP [Micrococcus
           luteus NCTC 2665]
 gi|281414011|ref|ZP_06245753.1| ATP-dependent Clp protease proteolytic subunit ClpP [Micrococcus
           luteus NCTC 2665]
 gi|239838706|gb|ACS30503.1| ATP-dependent Clp protease proteolytic subunit ClpP [Micrococcus
           luteus NCTC 2665]
          Length = 205

 Score =  228 bits (581), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 84/178 (47%), Positives = 118/178 (66%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           +R   +Y++LLK RIV++   + D  A  IC+QLL L AE+P+K+I LYINSPGG VTAG
Sbjct: 16  QREDFLYTQLLKSRIVWLGEDVRDDNANAICSQLLLLSAEDPEKDIYLYINSPGGSVTAG 75

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
           MAIYDTMQ+I   + T   G AASMG  LL++G KG R+A P+AR+L+HQPSGG  G  S
Sbjct: 76  MAIYDTMQYIPNDVVTVATGLAASMGQFLLASGTKGKRYATPHARVLMHQPSGGIGGTES 135

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           DI   AQ I+ +K+ + E+  +  G++ E + +   RD   +A EA ++G +D +   
Sbjct: 136 DIRIQAQLILHMKQVMAELTAEQTGQSVETILEDNARDKWFTAQEALEYGFIDHIADR 193


>gi|314974115|gb|EFT18211.1| Clp protease [Propionibacterium acnes HL053PA1]
          Length = 201

 Score =  228 bits (581), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 85/187 (45%), Positives = 125/187 (66%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +  M   +T     + ++Y  LL+ RIVF+  +++D  A  +CAQ+L L AE+P+ +I L
Sbjct: 1   MPAMAGPETGGAGMTDNVYQSLLRNRIVFLGSEVKDENANALCAQMLLLNAEDPEADIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VT GMAIYDTMQ+I   ++T  MG AASMG  LL+AG  G R+ALP+A+IL+
Sbjct: 61  YINSPGGSVTGGMAIYDTMQWISNDVATVTMGMAASMGQFLLTAGTPGKRYALPHAKILM 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  G A++I  +A+ +   KR L+++   + G T E++ +  DRDH  +A EA +
Sbjct: 121 HQPLGGVGGTATEIAINAKMLKDTKRELSQLNADHSGHTLEQILEDSDRDHWFTAQEALE 180

Query: 198 WGVVDKV 204
           +G++D V
Sbjct: 181 YGLIDHV 187


>gi|328882450|emb|CCA55689.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           venezuelae ATCC 10712]
          Length = 205

 Score =  228 bits (581), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 87/184 (47%), Positives = 121/184 (65%), Gaps = 1/184 (0%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           E +  G     +Y+RLL ERI+F+  Q++D +A  I AQ+L L A+ P K+I LYINSPG
Sbjct: 11  EPSIGGGLGDHVYNRLLGERIIFLGQQVDDEIANKITAQMLLLAAD-PDKDIYLYINSPG 69

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           G VTAGMA+YDTMQ+I   + T  MG AASMG  LL+ G  G RFALPN  IL+HQ S G
Sbjct: 70  GSVTAGMAVYDTMQYIPNDVVTIGMGMAASMGQFLLTGGTPGKRFALPNTDILMHQGSAG 129

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
             G ASDI+  A+ +++ K+R+ EI   + G+T E + +  DRD   +A EA ++G++D 
Sbjct: 130 IGGTASDIKIQAEYLLRTKQRMAEITAHHSGQTVEAIIRDGDRDRWFTADEAKEYGLIDD 189

Query: 204 VLMS 207
           ++  
Sbjct: 190 IITH 193


>gi|271968524|ref|YP_003342720.1| endopeptidase Clp [Streptosporangium roseum DSM 43021]
 gi|270511699|gb|ACZ89977.1| Endopeptidase Clp [Streptosporangium roseum DSM 43021]
          Length = 214

 Score =  228 bits (581), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 91/197 (46%), Positives = 139/197 (70%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T+ G +  + Y++L ++RI+F+  Q++D  A  + AQLL LE+ +P ++IS+
Sbjct: 15  VLPSFVERTSYGVKEMNPYNKLFEDRIIFLGVQVDDASANDVMAQLLTLESLDPDRDISV 74

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA MAIYDTMQF++P I T C+GQAAS  ++LL+ G  G RFALPNAR+L+
Sbjct: 75  YINSPGGSFTAMMAIYDTMQFVRPEIQTVCLGQAASAAAILLAGGTAGKRFALPNARMLI 134

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPS    GQ SDIE  A++I++++ ++  I  ++ GKT  EV K ++RD I+ A EA  
Sbjct: 135 HQPSTEGGGQGSDIEIQAREILRMRSQMETILARHSGKTPAEVRKDIERDKILDAEEAKA 194

Query: 198 WGVVDKVLMSRIDIEEK 214
           +G++D ++ SR  + + 
Sbjct: 195 YGLIDDIIPSRKKLAKA 211


>gi|326482374|gb|EGE06384.1| ATP-dependent Clp protease proteolytic subunit [Trichophyton
           equinum CBS 127.97]
          Length = 223

 Score =  228 bits (581), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 96/177 (54%), Positives = 138/177 (77%), Gaps = 3/177 (1%)

Query: 42  ERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP 101
           ERIV + G++++ ++  I AQLLFLEA+NP+K I LYINSPGG VTAG+AIYDTM +I+ 
Sbjct: 44  ERIVCLNGEVDETLSAAIVAQLLFLEADNPEKPIQLYINSPGGSVTAGLAIYDTMTYIQS 103

Query: 102 PISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKI 161
           P+ST C+GQAASMGSLLL  GE G R+ LP++ +++HQPSGG+ GQA+DI  HA++I+++
Sbjct: 104 PVSTICVGQAASMGSLLLCGGEAGKRYCLPHSSVMIHQPSGGYFGQATDIAIHAKEILRV 163

Query: 162 KRRLNEIYVKN-CGK--TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
           + +LN+IY ++  GK  T EE+EK ++RD+ M A EA + G+VD +L  R+  +E+S
Sbjct: 164 RHQLNQIYKRHLTGKEMTLEEIEKLMERDYFMGAKEALEMGIVDSILDRRMPSKEES 220


>gi|319440930|ref|ZP_07990086.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           variabile DSM 44702]
          Length = 227

 Score =  227 bits (580), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 85/193 (44%), Positives = 133/193 (68%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE ++ G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE  +P ++I++
Sbjct: 30  ILPSFVEHSSYGAKESNPYNKLFEERIIFLGTQVDDASANDIMAQLLVLEGLDPDRDITM 89

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++P I T C+GQAAS  ++LL+AG  G R ALPN+R+L+
Sbjct: 90  YINSPGGSFTSLMAIYDTMQYVRPDIVTVCLGQAASAAAVLLAAGTPGKRAALPNSRVLI 149

Query: 138 HQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+     GQ SD+E  A++I +++R + E   ++ G+T E+V    DRD  ++A EA 
Sbjct: 150 HQPATQGTQGQVSDLEIQAREIERMRRLMEETLSRHTGQTAEQVRLDTDRDKFLTADEAK 209

Query: 197 DWGVVDKVLMSRI 209
           ++G++D+V   R 
Sbjct: 210 EYGIIDQVFEYRK 222


>gi|327292805|ref|XP_003231100.1| ATP-dependent Clp protease [Trichophyton rubrum CBS 118892]
 gi|326466730|gb|EGD92183.1| ATP-dependent Clp protease [Trichophyton rubrum CBS 118892]
          Length = 223

 Score =  227 bits (580), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 96/177 (54%), Positives = 138/177 (77%), Gaps = 3/177 (1%)

Query: 42  ERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP 101
           ERIV + G++++ ++  I AQLLFLEA+NP+K I LYINSPGG VTAG+AIYDTM +I+ 
Sbjct: 44  ERIVCLNGEVDETLSAAIVAQLLFLEADNPEKPIQLYINSPGGSVTAGLAIYDTMTYIQS 103

Query: 102 PISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKI 161
           P+ST C+GQAASMGSLLL  GE G R+ LP++ +++HQPSGG+ GQA+DI  HA++I+++
Sbjct: 104 PVSTICVGQAASMGSLLLCGGEAGKRYCLPHSSVMIHQPSGGYFGQATDIAIHAKEILRV 163

Query: 162 KRRLNEIYVKN-CGK--TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
           + +LN+IY ++  GK  T EE+EK ++RD+ M A EA + G+VD +L  R+  +E+S
Sbjct: 164 RHQLNQIYKRHLTGKEMTLEEIEKLMERDYFMGAKEALEMGIVDSILDRRMPSKEES 220


>gi|315443632|ref|YP_004076511.1| ATP-dependent Clp protease proteolytic subunit ClpP [Mycobacterium
           sp. Spyr1]
 gi|315261935|gb|ADT98676.1| ATP-dependent Clp protease proteolytic subunit ClpP [Mycobacterium
           sp. Spyr1]
          Length = 198

 Score =  227 bits (580), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 86/173 (49%), Positives = 119/173 (68%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL ERI+F+  Q++D +A  +CAQ+L L AE+P K+I LYINSPGG ++AGMAIYD
Sbjct: 17  VYERLLAERIIFLGSQVDDDIANRLCAQILLLSAEDPTKDIHLYINSPGGSISAGMAIYD 76

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM      ++T+ MG AASMG  LL+AG KG R+ALP+ARIL+HQP GG +G A+DI   
Sbjct: 77  TMVLAPCDVATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGITGGAADIAIQ 136

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+    IK+ +  +  +  G+T E +E   DRD   +A EA ++G VD ++ S
Sbjct: 137 AEQFASIKKEMFRLNAEFTGQTIERIEADSDRDRWFTAQEALEYGFVDHIITS 189


>gi|315042532|ref|XP_003170642.1| ATP-dependent Clp protease proteolytic subunit [Arthroderma gypseum
           CBS 118893]
 gi|311344431|gb|EFR03634.1| ATP-dependent Clp protease proteolytic subunit [Arthroderma gypseum
           CBS 118893]
          Length = 222

 Score =  227 bits (580), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 95/177 (53%), Positives = 138/177 (77%), Gaps = 3/177 (1%)

Query: 42  ERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP 101
           ERIV + G++++ ++  I AQLLFLEA+NP+K I LYINSPGG VTAG+AIYDTM +I+ 
Sbjct: 44  ERIVCLNGEVDETLSAAIVAQLLFLEADNPEKPIQLYINSPGGSVTAGLAIYDTMTYIQS 103

Query: 102 PISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKI 161
           P+ST C+GQAASMGSLLL  GE G R+ LP++ +++HQPSGG+ GQA+DI  HA++I+++
Sbjct: 104 PVSTICVGQAASMGSLLLCGGEAGKRYCLPHSSVMIHQPSGGYFGQATDIAIHAKEILRV 163

Query: 162 KRRLNEIYVKN-CGK--TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
           + +LN+IY ++  GK  T +E+EK ++RD+ M A EA + G+VD +L  R+  +E+S
Sbjct: 164 RHQLNQIYKRHLTGKEMTLDEIEKLMERDYFMGAKEALEMGIVDSILDRRVPSKEES 220


>gi|302556966|ref|ZP_07309308.1| Clp protease [Streptomyces griseoflavus Tu4000]
 gi|302474584|gb|EFL37677.1| Clp protease [Streptomyces griseoflavus Tu4000]
          Length = 218

 Score =  227 bits (580), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 88/199 (44%), Positives = 126/199 (63%), Gaps = 1/199 (0%)

Query: 18  LVPMVVEQTNRGERSYD-IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           L P   E      R  D + ++LL +RIV +  Q+++  A  +CAQLL L AE+P+ +IS
Sbjct: 12  LTPRAEEGDTPPNRFDDHLAAQLLAQRIVLLGTQVDEVSANRVCAQLLILSAEDPRTDIS 71

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG V AG+AIYDTM+ I   ++T  MG AASMG  LL  G  G R+ALPNAR++
Sbjct: 72  LYINSPGGSVHAGLAIYDTMRLIPNDVATLAMGFAASMGQFLLCVGAPGKRYALPNARVM 131

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPSGG  G  +DIE  A+ +   KR +  I  ++ G+T E + +  DRD   +A +A 
Sbjct: 132 MHQPSGGIGGTTADIEIQAESLDFTKRTIERITAEHTGQTPETISRDGDRDRWFTAEQAR 191

Query: 197 DWGVVDKVLMSRIDIEEKS 215
           ++G+VD+V+ S  D+   +
Sbjct: 192 EYGMVDRVVESLDDVRPAA 210


>gi|239932976|ref|ZP_04689929.1| ATP-dependent Clp protease proteolytic subunit 1 [Streptomyces
           ghanaensis ATCC 14672]
 gi|291441329|ref|ZP_06580719.1| ATP-dependent Clp protease proteolytic subunit 3 [Streptomyces
           ghanaensis ATCC 14672]
 gi|291344224|gb|EFE71180.1| ATP-dependent Clp protease proteolytic subunit 3 [Streptomyces
           ghanaensis ATCC 14672]
          Length = 218

 Score =  227 bits (580), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 90/199 (45%), Positives = 126/199 (63%), Gaps = 1/199 (0%)

Query: 18  LVPMVVEQTNRGERSYDI-YSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            +P   E      R  D+   RLL +RIV +  Q+++  A  +CAQLL L AE+P+ +IS
Sbjct: 12  PLPRAEEGDTPPTRFDDLLADRLLAQRIVLLGTQVDEVSANRVCAQLLILSAEDPRTDIS 71

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LY+NSPGG V AG+AIYDTM+ I   +ST  MG AASMG  LLS G  G R+ALPNARI+
Sbjct: 72  LYVNSPGGSVHAGLAIYDTMRLIPNDVSTLAMGFAASMGQFLLSVGTAGKRYALPNARIM 131

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQPS G  G  +DIE  A+++   KR +  I  ++ G++ E V +  DRD   +A EA 
Sbjct: 132 MHQPSAGIGGTTADIEIQAENLEFTKRTIERITAEHTGQSPETVSRDGDRDRWFTAEEAR 191

Query: 197 DWGVVDKVLMSRIDIEEKS 215
           ++G+VD+V+ S  D+   +
Sbjct: 192 EYGMVDRVVESLADVRPAA 210


>gi|289705668|ref|ZP_06502053.1| Clp protease [Micrococcus luteus SK58]
 gi|289557616|gb|EFD50922.1| Clp protease [Micrococcus luteus SK58]
          Length = 205

 Score =  227 bits (580), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 84/178 (47%), Positives = 118/178 (66%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           +R   +Y++LLK RIV++   + D  A  IC+QLL L AE+P+K+I LYINSPGG VTAG
Sbjct: 16  QREDFLYTQLLKSRIVWLGEDVRDDNANAICSQLLLLSAEDPEKDIYLYINSPGGSVTAG 75

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
           MAIYDTMQ+I   + T   G AASMG  LL++G KG R+A P+AR+L+HQPSGG  G  S
Sbjct: 76  MAIYDTMQYIPNDVVTVATGLAASMGQFLLASGAKGKRYATPHARVLMHQPSGGIGGTES 135

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           DI   AQ I+ +K+ + E+  +  G++ E + +   RD   +A EA ++G +D +   
Sbjct: 136 DIRIQAQLILHMKQVMAELTAEQTGQSVETILEDNARDKWFTAQEALEYGFIDHIADR 193


>gi|283779542|ref|YP_003370297.1| endopeptidase Clp [Pirellula staleyi DSM 6068]
 gi|283437995|gb|ADB16437.1| Endopeptidase Clp [Pirellula staleyi DSM 6068]
          Length = 208

 Score =  227 bits (580), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 87/192 (45%), Positives = 128/192 (66%)

Query: 25  QTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG 84
           Q+ + +R   +   LL+ RIVF+ G+I    A  +  +LL+L++EN +K+I  YINSPGG
Sbjct: 16  QSYQRQRQLTLGDLLLENRIVFLQGEIYTGNANEMVMKLLYLQSENRRKDIHFYINSPGG 75

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
            V A +A+YDTMQ +  P++T+C+GQAAS  ++LL  G KG R+ALPN+RI++HQP GG 
Sbjct: 76  DVAATLAVYDTMQMLSCPVATYCVGQAASGAAVLLLGGTKGKRYALPNSRIMMHQPHGGV 135

Query: 145 SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            GQ SDIE  A++I++ +  LNEI  K+ G+  +++ K  DRD  +SA EA  +GVVD +
Sbjct: 136 GGQISDIEIQAREILRYREVLNEIISKHTGQAIDKIAKDCDRDFFLSAGEAKAYGVVDDI 195

Query: 205 LMSRIDIEEKSK 216
           L      E + K
Sbjct: 196 LQKMPGSEPEEK 207


>gi|170781893|ref|YP_001710225.1| ATP-dependent Clp protease proteolytic subunit [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169156461|emb|CAQ01609.1| ATP dependent Clp protease proteolytic subunit 1 [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 200

 Score =  227 bits (579), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 91/177 (51%), Positives = 124/177 (70%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           ++ RLLK+RI+++  ++ D  A  ICA++L L AE+ +K+I LYINSPGG +TAGMAIYD
Sbjct: 15  VFDRLLKDRIIWLGSEVRDDNANEICAKILLLAAEDSEKDIFLYINSPGGSITAGMAIYD 74

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQF+   I T  +G AASMG LLL++G KG R+  PNAR+LLHQP GGF G +SDI+  
Sbjct: 75  TMQFVPNDIVTVGIGMAASMGQLLLTSGTKGKRYITPNARVLLHQPHGGFGGTSSDIQTQ 134

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           AQ I+ +K+RL EI     GKT E++ +  DRD   +A EA ++G VD +  S  D+
Sbjct: 135 AQLILSMKQRLAEITAGQTGKTAEQINEDGDRDRWFTAQEALEYGFVDHIRESATDV 191


>gi|307324651|ref|ZP_07603857.1| Endopeptidase Clp [Streptomyces violaceusniger Tu 4113]
 gi|306889533|gb|EFN20513.1| Endopeptidase Clp [Streptomyces violaceusniger Tu 4113]
          Length = 220

 Score =  227 bits (579), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 88/196 (44%), Positives = 127/196 (64%), Gaps = 1/196 (0%)

Query: 20  PMVVEQTNRGERSYD-IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           P   E      R  D + S+LL +RIVF+  Q+++  A  +CAQ+L L AE+P+ +ISLY
Sbjct: 17  PRAAEGETAPTRFDDHLASQLLTQRIVFLGTQVDEVSANRVCAQMLLLSAEDPRSDISLY 76

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDTM+ I   +ST  MG AASMG  LL+ G  G R+ALPN+RI++H
Sbjct: 77  INSPGGSVTAGLAIYDTMRLIPNDVSTLTMGFAASMGQFLLTVGATGKRYALPNSRIMMH 136

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPS G  G  +DI   A+++  +KR +  I  ++ G++ E + +  DRD   +A +A ++
Sbjct: 137 QPSAGIGGSTADIAIQAENLEFMKRSIERITAEHTGQSVETISRDGDRDRWFTAEQAKEY 196

Query: 199 GVVDKVLMSRIDIEEK 214
           G+VD+VL S  D+   
Sbjct: 197 GMVDRVLESLADVRPA 212


>gi|29827687|ref|NP_822321.1| ATP-dependent Clp protease proteolytic subunit 1 [Streptomyces
           avermitilis MA-4680]
 gi|67460536|sp|Q82NZ4|CLPP1_STRAW RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|29604787|dbj|BAC68856.1| putative ATP-dependent Clp protease proteolytic subunit 1
           [Streptomyces avermitilis MA-4680]
          Length = 217

 Score =  227 bits (579), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 89/200 (44%), Positives = 127/200 (63%), Gaps = 1/200 (0%)

Query: 17  GLVPMVVEQTNRGERSYD-IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
            L P   E      R  D + ++LL +RIV +  Q+++  A  +CAQLL L AE+ + +I
Sbjct: 11  ALSPRAEEGDTPPSRFDDHLAAQLLAQRIVLLGTQVDEVSANRVCAQLLLLSAEDSRTDI 70

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG VTAG+AIYDTM+ I   +ST  MG AASMG  LLS G  G RFALPNARI
Sbjct: 71  SLYINSPGGSVTAGLAIYDTMRLIPNDVSTLAMGFAASMGQFLLSVGAAGKRFALPNARI 130

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPS G  G  +DIE  A+++   K+ +  I  ++ G++ E + +  DRD   +A +A
Sbjct: 131 MMHQPSAGIGGTTADIEIQAENLEFTKKAIERITAEHTGQSEETISRDGDRDRWFTAEQA 190

Query: 196 CDWGVVDKVLMSRIDIEEKS 215
            ++G+VD+V+ S  D+   +
Sbjct: 191 KEYGMVDRVVESLDDVRPTA 210


>gi|331268128|ref|YP_004347777.1| ATP-dependent Clp protease proteolytic subunit [Chlorella
           variabilis]
 gi|325296305|gb|ADZ05025.1| ATP-dependent Clp protease proteolytic subunit [Chlorella
           variabilis]
          Length = 201

 Score =  227 bits (579), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 76/188 (40%), Positives = 127/188 (67%), Gaps = 2/188 (1%)

Query: 19  VPMVVEQTNRGE--RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +       +  D+Y+RL +ER++F+  +++D +A  +   +L+L AE   K + 
Sbjct: 5   VPKVPFRLPGEPAAQWVDLYNRLYRERVLFLCQELDDELANQLIGIMLYLNAEEQNKGLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VT G+A+YD M +IK  ++T C+G AASM S +L+ G++G R ALP++RI+
Sbjct: 65  IYINSPGGSVTCGIAVYDAMNYIKSEVTTICVGTAASMASFILAGGDRGKRIALPHSRIM 124

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQAS++   ++++++I+R++  IY +  G+    + + +DRD  +SA EA 
Sbjct: 125 IHQPEGGSQGQASEVLSESEEVMRIRRQVGRIYSERTGQALSRISRDMDRDQFLSAREAK 184

Query: 197 DWGVVDKV 204
           D+G+VD+V
Sbjct: 185 DYGLVDQV 192


>gi|282880880|ref|ZP_06289573.1| Clp protease [Prevotella timonensis CRIS 5C-B1]
 gi|281305262|gb|EFA97329.1| Clp protease [Prevotella timonensis CRIS 5C-B1]
          Length = 221

 Score =  227 bits (579), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 85/190 (44%), Positives = 132/190 (69%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  +I+D+ A  + AQLL+L++ +  K+IS+YI
Sbjct: 32  PYILEERQLNVTQMDVFSRLMMDRIIFLGTEIDDYTANTLQAQLLYLDSVDGGKDISIYI 91

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VTAG+ IYDTMQFI   ++T C G AASM ++LL AG++G R AL ++R+++HQ
Sbjct: 92  NSPGGSVTAGLGIYDTMQFITSDVATICTGMAASMAAVLLVAGQEGKRSALTHSRVMIHQ 151

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I+K K+ L  I   +    YE+V +  DR++ M A +A ++G
Sbjct: 152 PLGGVQGQASDIEIEAKEIIKFKKELFTIIANHSHTPYEKVYRDSDRNYWMDAEQAKEYG 211

Query: 200 VVDKVLMSRI 209
           ++D VL+ + 
Sbjct: 212 MIDTVLVRKK 221


>gi|17028170|gb|AAL34333.1|L41144_1 ClpP [Brassica oleracea]
          Length = 279

 Score =  227 bits (579), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 73/176 (41%), Positives = 123/176 (69%)

Query: 31  RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGM 90
              D  + LL++RIVF+  Q++D  A L+ +QLL L+A++ +++I+L+INSPGG +TAGM
Sbjct: 52  EELDTTNMLLRQRIVFLGSQVDDMTADLVISQLLLLDAQDSERDITLFINSPGGSITAGM 111

Query: 91  AIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASD 150
            IYD M+  K  +ST C+G AASMG+ LL++G KG R+ +PN+++++HQP G   G+A++
Sbjct: 112 GIYDAMKQCKADVSTVCLGIAASMGAFLLASGSKGKRYCMPNSKVMIHQPLGSAGGKATE 171

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           +    ++++  K +LN+I+ +  GK   E+E   DRD+ ++  EA ++G+VD V+ 
Sbjct: 172 MSIRVREMMYHKIKLNKIFSRITGKPESEIEGDTDRDYFLNPWEAKEYGLVDAVID 227


>gi|303274250|ref|XP_003056447.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226462531|gb|EEH59823.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 209

 Score =  227 bits (579), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 84/202 (41%), Positives = 128/202 (63%), Gaps = 9/202 (4%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G  PMV+E      R   + ++L+ +RI+ + G ++D    LI AQLL+L+A +P ++I+
Sbjct: 4   GPPPMVME------RFQSVATQLMNQRIIRLGGAVDDDSCNLIVAQLLWLDAADPNQDIT 57

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG---MRFALPNA 133
           +Y+NSPGG VTAGMA++DTM+ ++P +ST C+G AASMG        +      ++LPN+
Sbjct: 58  IYVNSPGGSVTAGMAVFDTMRHVRPNVSTVCVGLAASMGKFTYEIHLRPPYLFSYSLPNS 117

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           RI++HQP GG  GQA+DIE  A +I+  K  LN    +  GK  E V +  DRD  MSA+
Sbjct: 118 RIMIHQPLGGAQGQAADIEIQANEIMHHKSTLNGYLAEFTGKPLEMVMEDTDRDFFMSAT 177

Query: 194 EACDWGVVDKVLMSRIDIEEKS 215
           EA ++G++D V+    D+  +S
Sbjct: 178 EAKEYGLIDTVIEHPTDVAVRS 199


>gi|297841293|ref|XP_002888528.1| hypothetical protein ARALYDRAFT_894344 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297334369|gb|EFH64787.1| hypothetical protein ARALYDRAFT_894344 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 308

 Score =  227 bits (579), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 73/176 (41%), Positives = 123/176 (69%)

Query: 31  RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGM 90
              D  + LL++RIVF+  Q++D  A L+ +QLL L+AE+ +++I+L+INSPGG +TAGM
Sbjct: 81  EELDTTNMLLRQRIVFLGSQVDDMTADLVISQLLLLDAEDSERDITLFINSPGGSITAGM 140

Query: 91  AIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASD 150
            IYD M+  K  +ST C+G AASMG+ LL++G KG R+ +PN+++++HQP G   G+A++
Sbjct: 141 GIYDAMKQCKADVSTVCLGLAASMGAFLLASGSKGKRYCMPNSKVMIHQPLGTAGGKATE 200

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           +    ++++  K +LN+I+ +  GK   E+E   DRD+ ++  EA ++G++D V+ 
Sbjct: 201 MSIRIREMMYHKIKLNKIFSRITGKPESEIEGDTDRDNFLNPWEAKEYGLIDAVID 256


>gi|224179483|ref|YP_002601006.1| proteolytic subunit 2 of clp protease [Monomastix sp. OKE-1]
 gi|217314526|gb|ACK36869.1| proteolytic subunit 2 of clp protease [Monomastix sp. OKE-1]
          Length = 201

 Score =  227 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 79/191 (41%), Positives = 129/191 (67%), Gaps = 2/191 (1%)

Query: 19  VPMVVEQTNR--GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +       +  D+Y+RL +ER++F+   ++D +A  +   +++L AE+  K I 
Sbjct: 5   VPKVAFRLPGEPTPQWIDLYNRLYRERVLFLGSDLDDELANQLVGIMIYLSAEDESKRIF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VT G+A+YD M  I+  ++T C+G AASM S +L+ GE+G R ALP++R++
Sbjct: 65  IYINSPGGSVTCGLAVYDAMHHIQARVTTLCIGIAASMASFVLAGGERGHRIALPHSRVM 124

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQASD+   A+++++I+R++  IY +  G++   + K++DRD  MSA EA 
Sbjct: 125 IHQPQGGSQGQASDVTAEAEEVMRIRRQIGRIYAERTGQSLATIAKSMDRDRFMSAKEAK 184

Query: 197 DWGVVDKVLMS 207
           ++G+VD+V  S
Sbjct: 185 EFGLVDQVASS 195


>gi|327540247|gb|EGF26836.1| Peptidase S14, ClpP [Rhodopirellula baltica WH47]
          Length = 205

 Score =  226 bits (577), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 87/189 (46%), Positives = 129/189 (68%)

Query: 25  QTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG 84
           Q+ + +R   +   LL+ RIVF+ G+I    A  I  +LL+L++EN +K+I LYINSPGG
Sbjct: 14  QSYQRQRQMTLGDLLLENRIVFMQGEIHYANANEIVMKLLYLQSENRRKDIHLYINSPGG 73

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
            VTA +AIYDTMQ +  P++T+C+G+A S  ++LL  G KG RF LPN+R+++HQP GG 
Sbjct: 74  SVTATLAIYDTMQMLSCPVATYCVGEACSGAAVLLIGGAKGKRFCLPNSRVMMHQPLGGV 133

Query: 145 SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           SGQ SDIE  A ++ + + +LNEI   +CGK+ E++ K  DRD  + A +A ++G+VD +
Sbjct: 134 SGQVSDIEIQAAEMFRYRDKLNEIISSHCGKSVEQIAKDTDRDFFLDAQQAKEYGLVDDL 193

Query: 205 LMSRIDIEE 213
           L+     EE
Sbjct: 194 LLGTPASEE 202


>gi|145593253|ref|YP_001157550.1| endopeptidase Clp [Salinispora tropica CNB-440]
 gi|145302590|gb|ABP53172.1| ATP-dependent Clp protease proteolytic subunit ClpP [Salinispora
           tropica CNB-440]
          Length = 194

 Score =  226 bits (577), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 79/177 (44%), Positives = 123/177 (69%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I+ RLLKERIVF+  ++ D  A  +CAQ+L L AE+P ++I LYINSPGG V+AGMA+YD
Sbjct: 16  IFERLLKERIVFLGTEVTDESANRVCAQILLLAAEDPDRDIKLYINSPGGSVSAGMAVYD 75

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQF++  ++T  +G A SMG  LL AG  G R+ALP++ IL+HQPSGG  G A+DI   
Sbjct: 76  TMQFVRNDVATLALGMAGSMGQFLLCAGTAGKRYALPHSWILMHQPSGGMGGTAADIRVQ 135

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           A++++ +K+ +  +  ++ G+T  E+++  DRD   +  +A ++G++D V+    ++
Sbjct: 136 AENLLHVKKTMQGLIAQHSGRTLVEIQQDWDRDRWFTPEQAREYGLIDHVVTQAAEL 192


>gi|21219747|ref|NP_625526.1| ATP-dependent Clp protease [Streptomyces coelicolor A3(2)]
 gi|256789167|ref|ZP_05527598.1| ATP-dependent Clp protease [Streptomyces lividans TK24]
 gi|289773060|ref|ZP_06532438.1| Clp protease [Streptomyces lividans TK24]
 gi|32171362|sp|Q9FCC9|CLPP5_STRCO RecName: Full=Putative ATP-dependent Clp protease proteolytic
           subunit-like; AltName: Full=Endopeptidase Clp-like
 gi|9716124|emb|CAC01462.1| putative ATP-dependent Clp protease [Streptomyces coelicolor A3(2)]
 gi|289703259|gb|EFD70688.1| Clp protease [Streptomyces lividans TK24]
          Length = 211

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 82/193 (42%), Positives = 132/193 (68%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T+ G R+ D YS+LL+ERIVF+   +++  A  + AQL++LE + P ++I L
Sbjct: 9   VLPEFTERTSAGTRTSDPYSKLLQERIVFLGTPVDETSANDVTAQLMYLEHQAPDRDIEL 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG  TA  AIYDTM+++   ++T C+GQA    ++LL+AG  G R ALP AR++L
Sbjct: 69  YVNSPGGSFTAMTAIYDTMRYVACDVATTCLGQAGPSAAVLLAAGTPGKRAALPGARVVL 128

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+      GQA D+  HA ++V+++ RL EI V++ G+T  +V   L+RD ++ A +A
Sbjct: 129 HQPALTEPVRGQAGDLAVHAAELVRVRARLEEILVRHTGRTPGQVAADLERDTVLDARQA 188

Query: 196 CDWGVVDKVLMSR 208
            ++G+VD+++  R
Sbjct: 189 REYGLVDRIVPGR 201


>gi|87306485|ref|ZP_01088632.1| ATP-dependent clp protease proteolytic subunit [Blastopirellula
           marina DSM 3645]
 gi|87290664|gb|EAQ82551.1| ATP-dependent clp protease proteolytic subunit [Blastopirellula
           marina DSM 3645]
          Length = 198

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 83/178 (46%), Positives = 122/178 (68%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           +R   +   LL+ RIVF+ G+I D  A  +  +LL+L++EN +K I+ YINSPGG VTA 
Sbjct: 9   QRQMTLGDMLLENRIVFLQGEIYDGNANELVMKLLYLQSENRRKPINFYINSPGGSVTAT 68

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
           MAIYDTM+ I  P+ST+C+G AAS G++LL+ GE G RF LP+A++++HQP GG  GQ S
Sbjct: 69  MAIYDTMKVISCPVSTYCVGLAASGGAVLLAGGEAGKRFILPHAKVMIHQPHGGVGGQVS 128

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           DIE  A +I+K +  LN++   +C +  E++ K  DRD  + A+ A  +G+VD++L  
Sbjct: 129 DIEIQADEILKTRDVLNQVLADHCNQPVEKIAKDTDRDFYLDANAAKAYGIVDEILTK 186


>gi|294786961|ref|ZP_06752215.1| Clp protease [Parascardovia denticolens F0305]
 gi|315226600|ref|ZP_07868388.1| ATP-dependent Clp protease proteolytic subunit [Parascardovia
           denticolens DSM 10105]
 gi|294485794|gb|EFG33428.1| Clp protease [Parascardovia denticolens F0305]
 gi|315120732|gb|EFT83864.1| ATP-dependent Clp protease proteolytic subunit [Parascardovia
           denticolens DSM 10105]
          Length = 206

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 91/192 (47%), Positives = 135/192 (70%), Gaps = 1/192 (0%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           L + P +  +T  G     I+SRLLK+RI+++  +++D  A +ICAQ+L L AE+P+K+I
Sbjct: 5   LPVSPRMEGETPMGGGDP-IFSRLLKDRIIWLGSEVKDENANVICAQMLMLAAEDPKKDI 63

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +TAGMAIYDTMQ I+P ++T  +G AASMG  LLS+G KG RF   +AR+
Sbjct: 64  WLYINSPGGSITAGMAIYDTMQLIEPDVATVAVGMAASMGQFLLSSGTKGKRFITSHARV 123

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQPSGG  G A+D+  +A+ I+ +K+ L+E+  +  G T EE+ +  + DH  +A +A
Sbjct: 124 LMHQPSGGVGGTATDVRINAELIMDMKKTLSELTAEQTGHTVEEIYRDNEYDHWFTAQQA 183

Query: 196 CDWGVVDKVLMS 207
            D+G VDK++ +
Sbjct: 184 LDYGFVDKIVTT 195


>gi|300786519|ref|YP_003766810.1| protease subunit of ATP-dependent Clp protease [Amycolatopsis
           mediterranei U32]
 gi|299796033|gb|ADJ46408.1| protease subunit of ATP-dependent Clp protease [Amycolatopsis
           mediterranei U32]
          Length = 193

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 90/186 (48%), Positives = 122/186 (65%), Gaps = 1/186 (0%)

Query: 22  VVEQTNRGERSYD-IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           V +    G+   D +Y +LL++RIVF+  ++ D +A  I AQLL L A++P K+I+ YIN
Sbjct: 6   VPDLQAPGQTLNDSVYEQLLRDRIVFLGSEVNDDIANRIIAQLLLLAADDPAKDITFYIN 65

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGG VTAGMAIYDTMQ +KP +ST+ +G  ASMG  LLS+G  G R+ LPN RI++HQP
Sbjct: 66  SPGGSVTAGMAIYDTMQLVKPDVSTWGLGFVASMGQFLLSSGTPGKRYLLPNTRIVMHQP 125

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
           S G SG A+DI   A+   K+KRR+ EI  +  G+T E +    DRD    A EA  +G 
Sbjct: 126 SAGISGAAADIAIQAEVFGKMKRRIAEITARQTGQTVERITADADRDRWFDADEALTYGF 185

Query: 201 VDKVLM 206
           VD ++ 
Sbjct: 186 VDHIVT 191


>gi|289644976|ref|ZP_06477015.1| Endopeptidase Clp [Frankia symbiont of Datisca glomerata]
 gi|289505212|gb|EFD26272.1| Endopeptidase Clp [Frankia symbiont of Datisca glomerata]
          Length = 210

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 95/193 (49%), Positives = 143/193 (74%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P ++E+T+RGE   D YS+LLKERI+F+  QI+D  A  I AQLL+LE E+  ++ISL
Sbjct: 10  VLPNIIERTSRGEYGMDPYSKLLKERIIFLGTQIDDVSANDIMAQLLYLEGEDADRDISL 69

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA MAIYDT+QF++P I T C+GQA S  ++LL+AG  G RFAL N+RILL
Sbjct: 70  YINSPGGSFTALMAIYDTLQFVRPDIQTLCLGQAVSGAAVLLAAGTPGKRFALSNSRILL 129

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
            QPS    GQ+SD+E HA++I++++  L  I  ++  ++ +++ + ++RD I+ A+EA +
Sbjct: 130 DQPSSQSQGQSSDLEIHAREILRMRDLLETILARHTNRSPDQIRRDVERDKILDANEAVE 189

Query: 198 WGVVDKVLMSRID 210
           +G+VD+V+ SR +
Sbjct: 190 YGLVDEVIQSRKN 202


>gi|309811146|ref|ZP_07704942.1| endopeptidase Clp [Dermacoccus sp. Ellin185]
 gi|308434876|gb|EFP58712.1| endopeptidase Clp [Dermacoccus sp. Ellin185]
          Length = 221

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 88/193 (45%), Positives = 136/193 (70%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T+ G +  D Y++L ++RI+F+  Q++D  A  I AQL+ LE+++P ++I +
Sbjct: 24  ILPQFEERTSYGTKRLDPYTKLFEDRIIFLGVQVDDASADDIIAQLIVLESQDPDRDIVM 83

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+I+P + TF +GQAAS  ++LL AG  G R+ALPNAR+L+
Sbjct: 84  YINSPGGSFTALTAIYDTMQYIRPDVHTFVLGQAASAAAVLLGAGAPGKRYALPNARVLI 143

Query: 138 HQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+     GQASD+E  A +I++++  L E   K+ G++ E+V   +DRD I++A  A 
Sbjct: 144 HQPAMEGSGGQASDVEIQANEIMRMREWLEETLAKHSGRSIEQVRADIDRDKILTAEMAK 203

Query: 197 DWGVVDKVLMSRI 209
           ++G++D+VL SR 
Sbjct: 204 EYGLIDEVLTSRK 216


>gi|256375240|ref|YP_003098900.1| endopeptidase Clp [Actinosynnema mirum DSM 43827]
 gi|255919543|gb|ACU35054.1| Endopeptidase Clp [Actinosynnema mirum DSM 43827]
          Length = 205

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 85/190 (44%), Positives = 121/190 (63%), Gaps = 1/190 (0%)

Query: 26  TNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV 85
           T     +  ++ +LL+ RIVF+  ++ D +A  + AQLL L AE+P+ +I  YINSPGG 
Sbjct: 15  TGGMTLTDSVFEQLLRSRIVFLGSEVNDEVANRLTAQLLLLSAEDPKSDIKFYINSPGGS 74

Query: 86  VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS 145
           VTAGMAIYDTMQ I+P + T+ MG  ASMG  LLS+G  G R+ LP+ R+L+HQPS G  
Sbjct: 75  VTAGMAIYDTMQLIEPDVQTWGMGMVASMGQFLLSSGTPGKRYLLPHTRVLMHQPSAGVG 134

Query: 146 GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           G A+DI   A+     KR++ EI  +  G+T+E +    DRD   +A EA ++G VD +L
Sbjct: 135 GTATDIAIQAEAFAYTKRQMAEITAQQTGQTFERITADADRDRWFTAEEALEYGFVDHIL 194

Query: 206 MSRIDIEEKS 215
            +R ++   S
Sbjct: 195 -NREELTRSS 203


>gi|327348449|gb|EGE77306.1| ATP-dependent Clp protease proteolytic subunit [Ajellomyces
           dermatitidis ATCC 18188]
          Length = 222

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 97/191 (50%), Positives = 137/191 (71%), Gaps = 4/191 (2%)

Query: 4   EGCAKKDSEDVFLG--LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICA 61
              + + S     G    P V E    G  +YDI+SRLLKERIV + G++++ ++  I A
Sbjct: 20  RNYSNRPSLTPPRGWTPTPFVTETVGGGWHTYDIFSRLLKERIVCLNGEVDETLSASIVA 79

Query: 62  QLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSA 121
           QLLFLEA+NP+K I LYINSPGG VTAG+A+YDTM +I  P+ST C+GQAASMGSLLL  
Sbjct: 80  QLLFLEADNPEKPIHLYINSPGGSVTAGLAVYDTMTYISAPVSTICVGQAASMGSLLLCG 139

Query: 122 GEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK--TYEE 179
           G  G R+ LP++ +++HQPSGG+ GQA+DI  HA++I++++R+LNEIY  +  K  + +E
Sbjct: 140 GHPGKRYCLPHSSVMVHQPSGGYFGQATDIAIHAKEILRVRRQLNEIYKLHLTKEMSLDE 199

Query: 180 VEKTLDRDHIM 190
           +EK ++RD+ M
Sbjct: 200 IEKWMERDYFM 210


>gi|300788576|ref|YP_003768867.1| protease subunit of ATP-dependent Clp protease [Amycolatopsis
           mediterranei U32]
 gi|299798090|gb|ADJ48465.1| protease subunit of ATP-dependent Clp protease [Amycolatopsis
           mediterranei U32]
          Length = 217

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 87/193 (45%), Positives = 137/193 (70%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T+ G +  + Y++L +ER++F+  Q++D  A  + AQLL LE E+P ++I +
Sbjct: 21  ILPSYVERTSYGVKESNPYNKLYEERVIFLGVQVDDASANDVMAQLLHLEHEDPDRDILI 80

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQF++P I T+C+GQAAS  ++LLSAG  G R+ALPN+R+L+
Sbjct: 81  YINSPGGSFTSLMAIYDTMQFVRPDIQTYCLGQAASAAAVLLSAGTPGKRYALPNSRVLI 140

Query: 138 HQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+     GQ SD+E  A +I +++R++  I   + GK  +++ K ++RD I++A EA 
Sbjct: 141 HQPATEGTYGQVSDLEIQANEIQRVRRQMEVILAHHTGKDADQIRKDIERDKILTAEEAK 200

Query: 197 DWGVVDKVLMSRI 209
            +G++D+VL  R 
Sbjct: 201 SYGIIDEVLPYRK 213


>gi|282878163|ref|ZP_06286960.1| Clp protease [Prevotella buccalis ATCC 35310]
 gi|281299741|gb|EFA92113.1| Clp protease [Prevotella buccalis ATCC 35310]
          Length = 229

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 86/196 (43%), Positives = 133/196 (67%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++E+        D++SRL+ +RI+F+  +I+D+ A  + AQLL+L++ +  K+IS+YI
Sbjct: 32  PYILEERQLNVTQLDVFSRLMMDRIIFLGTEIDDYTANTLQAQLLYLDSADSGKDISIYI 91

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VTAG+ IYDTMQFI   ++T C G AASM ++LL AG++G R AL ++R+++HQ
Sbjct: 92  NSPGGSVTAGLGIYDTMQFISSDVATICTGMAASMAAVLLVAGQEGKRSALTHSRVMIHQ 151

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  GQASDIE  A++I+K K+ L  I   +    YE+V +  DR++ M A +A  +G
Sbjct: 152 PLGGVQGQASDIEIEAKEIIKFKKELFTIIANHSHTPYEKVYRDSDRNYWMDAEQAKKYG 211

Query: 200 VVDKVLMSRIDIEEKS 215
           ++D VL+ +    E +
Sbjct: 212 MIDTVLVRKQQKVENA 227


>gi|254774529|ref|ZP_05216045.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium avium
           subsp. avium ATCC 25291]
          Length = 196

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 85/176 (48%), Positives = 119/176 (67%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           +  +Y RLL ERI+F+  ++ D +A  +CAQ+L L AE+P K+ISLYINSPGG ++AGMA
Sbjct: 11  TDSVYERLLSERIIFLGSEVNDDVANRLCAQILLLAAEDPTKDISLYINSPGGSISAGMA 70

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYDTM      I+T+ MG AASMG  LL+AG KG R+ALP+ARIL+HQP GG +G A+DI
Sbjct: 71  IYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADI 130

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
              A+    IK+ +  +  +  G++ E +E   DRD   +A EA ++G VD ++  
Sbjct: 131 AIQAEQFHVIKKEMFRLNAEFTGQSIERIEADSDRDRWFTAQEALEYGFVDHIITR 186


>gi|307109118|gb|EFN57356.1| hypothetical protein CHLNCDRAFT_142728 [Chlorella variabilis]
          Length = 267

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 85/192 (44%), Positives = 127/192 (66%), Gaps = 2/192 (1%)

Query: 14  VFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQK 73
           +  G  P++  +T   + + D +  LL++RIVF  G++ D  A  I +QLL L+A++P K
Sbjct: 57  IIAGQQPILSPRTQ--DMAGDPFGLLLRQRIVFFGGEVNDFSADAIISQLLLLDAQDPTK 114

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I ++INSPGG VTAGM IYD M   +  + T+C G AASMG+ LL AG +G R+++PNA
Sbjct: 115 DIKMFINSPGGSVTAGMGIYDAMMMCRADVQTYCFGLAASMGAFLLGAGTRGKRYSMPNA 174

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           RI++HQP GG SG A DIE  A++I+  K  LN I  +  G+  E++E+  DRD  MS  
Sbjct: 175 RIMIHQPLGGASGAAVDIEIQAKEIMYHKANLNRIMSQYTGQPIEKIEEDTDRDRYMSPL 234

Query: 194 EACDWGVVDKVL 205
           EA ++G++D ++
Sbjct: 235 EAKNYGLIDSLV 246


>gi|308177635|ref|YP_003917041.1| ATP-dependent Clp protease proteolytic subunit ClpP [Arthrobacter
           arilaitensis Re117]
 gi|307745098|emb|CBT76070.1| ATP-dependent Clp protease proteolytic subunit ClpP [Arthrobacter
           arilaitensis Re117]
          Length = 206

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 90/189 (47%), Positives = 122/189 (64%), Gaps = 1/189 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
            P +      G   Y IY+RLLKERI+++   + D  A  IC+QLL L AE+P+K+I LY
Sbjct: 7   TPTMAASEPAGRDDY-IYNRLLKERIIWLGSDVRDDNANAICSQLLLLSAEDPEKDIYLY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG +TAGMAIYDTM FI   + T   G AASMG  LLS+G  G RFA PNARIL+H
Sbjct: 66  INSPGGSITAGMAIYDTMNFIPNDVVTVATGLAASMGQFLLSSGTPGKRFATPNARILMH 125

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  G ASDI+  A+ I+ +K+ ++E+  +  G+T E++     RD   +A +A ++
Sbjct: 126 QPSGGIGGTASDIKIQAELIMHMKKVMSELTAEQTGQTVEQILIDNQRDKWFTAQDALEY 185

Query: 199 GVVDKVLMS 207
           G  D++   
Sbjct: 186 GFFDQIATH 194


>gi|311113766|ref|YP_003984988.1| ATP-dependent Clp protease proteolytic subunit [Rothia dentocariosa
           ATCC 17931]
 gi|310945260|gb|ADP41554.1| ATP-dependent Clp protease proteolytic subunit [Rothia dentocariosa
           ATCC 17931]
          Length = 195

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 91/177 (51%), Positives = 120/177 (67%), Gaps = 1/177 (0%)

Query: 28  RGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVT 87
            G+  Y +Y+RLLKERI+++  ++ D  A LIC+Q+L L AE+P+ +I LYINSPGG VT
Sbjct: 7   TGQEDY-VYNRLLKERIIWLGSEVRDSNANLICSQMLLLSAEDPEADIYLYINSPGGSVT 65

Query: 88  AGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQ 147
           AGMAIYDTMQ I   + T   G AASMG  LL+AG  G R+A PNARIL+HQP GG  G 
Sbjct: 66  AGMAIYDTMQLIPNDVVTVVTGMAASMGQFLLTAGAMGKRYATPNARILMHQPLGGIGGT 125

Query: 148 ASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           ASDI   A+ I+ +K+RL EI  +  GK+ E + K  DRD+  +A E  ++G  D +
Sbjct: 126 ASDIRTQAELILDMKKRLAEITAERTGKSLETILKDNDRDNWFTAEEGLEYGFFDHI 182


>gi|23465517|ref|NP_696120.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           longum NCC2705]
 gi|46190462|ref|ZP_00206473.1| COG0740: Protease subunit of ATP-dependent Clp proteases
           [Bifidobacterium longum DJO10A]
 gi|189439548|ref|YP_001954629.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           longum DJO10A]
 gi|227546002|ref|ZP_03976051.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           longum subsp. infantis ATCC 55813]
 gi|239621942|ref|ZP_04664973.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           longum subsp. infantis CCUG 52486]
 gi|312132957|ref|YP_004000296.1| clpp1 [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482288|ref|ZP_07941309.1| Clp protease [Bifidobacterium sp. 12_1_47BFAA]
 gi|322688891|ref|YP_004208625.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           longum subsp. infantis 157F]
 gi|67460559|sp|Q8G5R0|CLPP1_BIFLO RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|23326177|gb|AAN24756.1| ATP-dependent Clp protease proteolytic subunit 2 [Bifidobacterium
           longum NCC2705]
 gi|189427983|gb|ACD98131.1| ATP-dependent Clp proteases Protease subunit [Bifidobacterium
           longum DJO10A]
 gi|227213636|gb|EEI81485.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           longum subsp. infantis ATCC 55813]
 gi|239515133|gb|EEQ55000.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           longum subsp. infantis CCUG 52486]
 gi|291517064|emb|CBK70680.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Bifidobacterium longum subsp. longum F8]
 gi|311773939|gb|ADQ03427.1| ClpP1 [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916304|gb|EFV37705.1| Clp protease [Bifidobacterium sp. 12_1_47BFAA]
 gi|320460227|dbj|BAJ70847.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           longum subsp. infantis 157F]
          Length = 233

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 85/209 (40%), Positives = 142/209 (67%), Gaps = 3/209 (1%)

Query: 3   FEGCAKKDSEDVFLG--LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           F   + + ++       ++P  VE+T  G ++ D YSRL ++RI+F+  Q++D  A  + 
Sbjct: 24  FMPASARAAQPAPTNRYIMPQFVEKTPYGMKTQDAYSRLFEDRIIFLGVQVDDASADDVM 83

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLL LE+++P +++ +YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL+
Sbjct: 84  AQLLVLESQDPNRDVMMYINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLA 143

Query: 121 AGEKGMRFALPNARILLHQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
           +G KG R  LPNAR+L+HQP+     G+A++IE  A+++++++  L E   K+ G+  E+
Sbjct: 144 SGTKGKRLMLPNARVLIHQPAIDQGFGKATEIEIQAKEMLRMREWLEETLAKHTGQDVEK 203

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           + + ++ D  ++A EA ++G+VD+VL  R
Sbjct: 204 IRRDIEVDTFLTAPEAKEYGIVDEVLEHR 232


>gi|294629345|ref|ZP_06707905.1| Clp protease [Streptomyces sp. e14]
 gi|292832678|gb|EFF91027.1| Clp protease [Streptomyces sp. e14]
          Length = 226

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 90/193 (46%), Positives = 138/193 (71%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T++G R YD Y++L +ER++F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 27  VIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISV 86

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQF+KP I T CMGQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 87  YINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNARVLI 146

Query: 138 HQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP      GQ SD+E  A +I++++ +L E+  K+     E++ + ++RD I++A EA 
Sbjct: 147 HQPYSETGRGQVSDLEIAANEILRMRSQLEEMLAKHSTTPVEKIREDIERDKILTAEEAL 206

Query: 197 DWGVVDKVLMSRI 209
           ++G++D+++ +R 
Sbjct: 207 EYGLIDQIISTRK 219


>gi|170516914|gb|ACB15393.1| CplP2 [Bifidobacterium longum]
          Length = 233

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 85/209 (40%), Positives = 142/209 (67%), Gaps = 3/209 (1%)

Query: 3   FEGCAKKDSEDVFLG--LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           F   + + ++       ++P  VE+T  G ++ D YSRL ++RI+F+  Q++D  A  + 
Sbjct: 24  FMPASARAAQPAPTNRYIMPQFVEKTPYGMKTQDAYSRLFEDRIIFLGVQVDDASADDVM 83

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLL LE+++P +++ +YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL+
Sbjct: 84  AQLLVLESQDPNRDVMMYINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLA 143

Query: 121 AGEKGMRFALPNARILLHQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
           +G KG R  LPNAR+L+HQP+     G+A++IE  A+++++++  L E   K+ G+  E+
Sbjct: 144 SGTKGKRLMLPNARVLIHQPAIDQGFGKATEIEIQAKEMLRMREWLEETLAKHTGQDVEK 203

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           + + ++ D  ++A EA ++G+VD+VL  R
Sbjct: 204 IRRDIEVDTFLTAPEAKEYGIVDEVLEHR 232


>gi|255326612|ref|ZP_05367689.1| Clp protease [Rothia mucilaginosa ATCC 25296]
 gi|283457916|ref|YP_003362518.1| protease subunit of ATP-dependent Clp protease [Rothia mucilaginosa
           DY-18]
 gi|255296352|gb|EET75692.1| Clp protease [Rothia mucilaginosa ATCC 25296]
 gi|283133933|dbj|BAI64698.1| protease subunit of ATP-dependent Clp protease [Rothia mucilaginosa
           DY-18]
          Length = 217

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 90/188 (47%), Positives = 121/188 (64%)

Query: 29  GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTA 88
           G +   +Y+ LLKERI+++  ++ D  A LIC+Q+L L AE+P+ +I LYINSPGG VTA
Sbjct: 29  GAQEDYVYNSLLKERIIWLGSEVRDSNANLICSQMLLLSAEDPEADIYLYINSPGGSVTA 88

Query: 89  GMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQA 148
           GMAIYDTMQ I   + T   G AASMG  LL+AG  G R+A PNARIL+HQP GG  G A
Sbjct: 89  GMAIYDTMQLIPNDVVTVVTGMAASMGQFLLTAGTIGKRYATPNARILMHQPLGGIGGTA 148

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           SDI   A+ I+ +K+RL EI  +  GK+ E + K  DRD+  +A E  ++G  D +  + 
Sbjct: 149 SDIRTQAELILDMKKRLAEITAERTGKSLETILKDNDRDNWFNAEEGLEYGFFDHIATTA 208

Query: 209 IDIEEKSK 216
             + E   
Sbjct: 209 GKLPESKN 216


>gi|328907724|gb|EGG27488.1| Clp protease [Propionibacterium sp. P08]
          Length = 212

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 87/188 (46%), Positives = 126/188 (67%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G+  M   +T     + ++Y  LL+ RIVF+  +++D  A  +CAQ+L L AE+P+ +I 
Sbjct: 11  GMPAMAGPETGGAGMTDNVYQSLLRNRIVFLGSEVKDENANALCAQMLLLNAEDPEADIY 70

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VT GMAIYDTMQ+I   ++T  MG AASMG  LL+AG  G R+ALP+A+IL
Sbjct: 71  LYINSPGGSVTGGMAIYDTMQWISNDVATVTMGMAASMGQFLLTAGTPGKRYALPHAKIL 130

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  G A++I  +A+ +   KR L+++   + G T E++ +  DRDH  +A EA 
Sbjct: 131 MHQPLGGVGGTATEIAINAKMLKDTKRELSQLNADHSGHTLEQILEDSDRDHWFTAQEAL 190

Query: 197 DWGVVDKV 204
           D+G++D V
Sbjct: 191 DYGLIDYV 198


>gi|169628671|ref|YP_001702320.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           abscessus ATCC 19977]
 gi|169240638|emb|CAM61666.1| ATP-dependent Clp protease, proteolytic subunit 2 [Mycobacterium
           abscessus]
          Length = 197

 Score =  225 bits (575), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 88/173 (50%), Positives = 122/173 (70%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y RLL ERI+F+  Q++D +A  +CAQ+L L AE+P K+I LYINSPGG ++AGMAI+D
Sbjct: 14  VYERLLSERIIFLGQQVDDDIANKLCAQILLLTAEDPTKDIHLYINSPGGSISAGMAIFD 73

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ  +  I+T+ MG AASMG  LL+AG KG R ALP+ARIL+HQP GG +G ASDI   
Sbjct: 74  TMQLSECDIATYAMGMAASMGEFLLAAGTKGKRHALPHARILMHQPLGGVTGSASDIAIQ 133

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+    IK+ +  +  +  GK+ E++E+  DRD   +A EA ++G VDK++  
Sbjct: 134 AEQFQVIKKEMFRLNAEFTGKSIEQIEQDSDRDRWFTAPEALEYGFVDKIITR 186


>gi|320161285|ref|YP_004174509.1| ATP-dependent Clp protease proteolytic subunit [Anaerolinea
           thermophila UNI-1]
 gi|319995138|dbj|BAJ63909.1| ATP-dependent Clp protease proteolytic subunit [Anaerolinea
           thermophila UNI-1]
          Length = 218

 Score =  225 bits (575), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 84/173 (48%), Positives = 122/173 (70%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+ + LL+ RI+++   I+D +A  I AQLLFL  E+ +  I +YINSPGG V AG+AIY
Sbjct: 36  DLNALLLRNRIIYLGTAIDDKVANNIVAQLLFLSNEDREAPIQMYINSPGGQVYAGLAIY 95

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D MQ I  PIST  +G  AS G++LL+AG KGMR+ALPNA I +HQP GG  GQA++IE 
Sbjct: 96  DAMQIIPNPISTLAVGVTASFGTVLLAAGTKGMRYALPNATIHMHQPLGGAQGQATEIEI 155

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
            A++I+++K RLN+I   + G+T E +++  +RD  M A +A ++G+VD ++ 
Sbjct: 156 QAKEILRLKARLNQILAAHTGQTVETIQRDTERDRYMDAHQAMEYGLVDHIME 208


>gi|325092382|gb|EGC45692.1| ATP-dependent Clp protease proteolytic subunit [Ajellomyces
           capsulatus H88]
          Length = 229

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 92/171 (53%), Positives = 132/171 (77%), Gaps = 2/171 (1%)

Query: 42  ERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP 101
           ERIV + G++++ ++  I AQLLFLEA+NP+K I LYINSPGG VTAG+A+YDTM +I  
Sbjct: 45  ERIVCLNGEVDESLSASIVAQLLFLEADNPEKPIHLYINSPGGSVTAGLAVYDTMTYISA 104

Query: 102 PISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKI 161
           P+ST C+GQAASMGSLLL  G  G R+ LP++ +++HQPSGG+ GQA+DI  HA++I+++
Sbjct: 105 PVSTICVGQAASMGSLLLCGGHPGKRYCLPHSSVMVHQPSGGYFGQATDIAIHAKEILRV 164

Query: 162 KRRLNEIYVKNCGK--TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           +R+LNEIY  +  K  + +E+EK ++RD+ M A EA + G+VD++L  RI 
Sbjct: 165 RRQLNEIYKMHLTKEMSLDEIEKWMERDYFMGAREALEMGIVDEILDRRIK 215


>gi|323359780|ref|YP_004226176.1| protease subunit of ATP-dependent Clp protease [Microbacterium
           testaceum StLB037]
 gi|323276151|dbj|BAJ76296.1| protease subunit of ATP-dependent Clp protease [Microbacterium
           testaceum StLB037]
          Length = 194

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 92/181 (50%), Positives = 124/181 (68%)

Query: 31  RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGM 90
            +  ++ RLLK+RI+++  ++ D  A  ICA++L L AE+PQK+I LYINSPGG +TAGM
Sbjct: 6   MATSVFDRLLKDRIIWLGSEVRDENANEICAKILLLAAEDPQKDIYLYINSPGGSITAGM 65

Query: 91  AIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASD 150
           AIYDTMQF+   I T  +G AASMG LLL++G KG R+  PNAR+LLHQP GGF G +SD
Sbjct: 66  AIYDTMQFVPNDIVTVGIGMAASMGQLLLTSGTKGKRYITPNARVLLHQPHGGFGGTSSD 125

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           I+  AQ I+ +KRRL EI     GK+ E++    DRD   +A EA ++G VD +     D
Sbjct: 126 IQTQAQLILDMKRRLAEITASQTGKSVEQINADGDRDRWFTAQEALEYGFVDHMREHATD 185

Query: 211 I 211
           +
Sbjct: 186 V 186


>gi|108800543|ref|YP_640740.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium sp.
           MCS]
 gi|119869682|ref|YP_939634.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium sp.
           KMS]
 gi|126436159|ref|YP_001071850.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium sp.
           JLS]
 gi|108770962|gb|ABG09684.1| ATP-dependent Clp protease proteolytic subunit ClpP [Mycobacterium
           sp. MCS]
 gi|119695771|gb|ABL92844.1| ATP-dependent Clp protease proteolytic subunit ClpP / ClpP2
           peptidase, Serine peptidase, MEROPS family S14
           [Mycobacterium sp. KMS]
 gi|126235959|gb|ABN99359.1| ATP-dependent Clp protease proteolytic subunit ClpP [Mycobacterium
           sp. JLS]
          Length = 215

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 90/211 (42%), Positives = 138/211 (65%), Gaps = 4/211 (1%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS +   +   +  +  ++P  +E ++ G +  + Y++L +ERI+F+  Q++D  A  I 
Sbjct: 1   MSNQTDPRLQPQARY--ILPSFIEHSSFGVKESNPYNKLFEERIIFLGVQVDDASANDIM 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLL LE+ +P ++I++YINSPGG  T+ MAIYDTMQ+++  I T C+GQAAS  ++LL+
Sbjct: 59  AQLLVLESLDPDRDITMYINSPGGSFTSLMAIYDTMQYVRADIQTVCLGQAASAAAVLLA 118

Query: 121 AGEKGMRFALPNARILLHQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYE 178
           AG  G R ALPNARIL+HQP  SG   GQ SD+E  A++I +++  +     ++ GK  E
Sbjct: 119 AGTPGKRLALPNARILIHQPALSGVIQGQFSDLEIQAKEIERMRTLMEVTLARHTGKDPE 178

Query: 179 EVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
            + K  DRD I++A EA D+G++D VL  R 
Sbjct: 179 TIRKDTDRDKILTAEEAKDYGIIDTVLEYRK 209


>gi|240281120|gb|EER44623.1| ATP-dependent Clp protease proteolytic subunit [Ajellomyces
           capsulatus H143]
          Length = 229

 Score =  225 bits (574), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 92/171 (53%), Positives = 132/171 (77%), Gaps = 2/171 (1%)

Query: 42  ERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP 101
           ERIV + G++++ ++  I AQLLFLEA+NP+K I LYINSPGG VTAG+A+YDTM +I  
Sbjct: 45  ERIVCLNGEVDESLSASIVAQLLFLEADNPEKPIHLYINSPGGSVTAGLAVYDTMTYISA 104

Query: 102 PISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKI 161
           P+ST C+GQAASMGSLLL  G  G R+ LP++ +++HQPSGG+ GQA+DI  HA++I+++
Sbjct: 105 PVSTICVGQAASMGSLLLCGGHPGKRYCLPHSSVMVHQPSGGYFGQATDIAIHAKEILRV 164

Query: 162 KRRLNEIYVKNCGK--TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           +R+LNEIY  +  K  + +E+EK ++RD+ M A EA + G+VD++L  RI 
Sbjct: 165 RRQLNEIYKMHLTKEMSLDEIEKWMERDYFMGAREALEMGIVDEILDRRIK 215


>gi|291297753|ref|YP_003509031.1| endopeptidase Clp [Stackebrandtia nassauensis DSM 44728]
 gi|290566973|gb|ADD39938.1| Endopeptidase Clp [Stackebrandtia nassauensis DSM 44728]
          Length = 206

 Score =  225 bits (574), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 86/197 (43%), Positives = 133/197 (67%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVE+T  GER++DIYSRLL +RI+F+  +I+D +A ++ AQLL LE+ +P  +I LY
Sbjct: 6   IPTVVEKTAGGERAFDIYSRLLSDRIIFIGTEIDDGVANVVMAQLLHLESVSPDLQIGLY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  +A  AIYDTM+FI+P I+T CMG A+S  ++LL+AG  G R  L +A+++LH
Sbjct: 66  INSPGGSFSALTAIYDTMEFIRPDIATTCMGHASSAAAVLLAAGTPGKRSMLRHAKVMLH 125

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPS    G   D+   A+++ K++  ++EI   + G    ++ +  DR+   SA EA ++
Sbjct: 126 QPSSQAQGTLPDLAIQAKEVAKVRAEMDEILSHHTGHPVAKIREDTDRNKTFSAQEAVEY 185

Query: 199 GVVDKVLMSRIDIEEKS 215
           G+VD+++ SR     K+
Sbjct: 186 GLVDQIITSRKASPVKA 202


>gi|296170471|ref|ZP_06852059.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295894942|gb|EFG74663.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 199

 Score =  225 bits (574), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 84/176 (47%), Positives = 118/176 (67%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           +  +Y RLL ERI+F+  ++ D +A  +CAQ+L L AE+  K+ISLYINSPGG ++AGMA
Sbjct: 14  TDSVYERLLSERIIFLGSEVNDEVANRLCAQILLLAAEDADKDISLYINSPGGSISAGMA 73

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYDTM      I+T+ MG AASMG  LL+AG KG R+ALP+ARIL+HQP GG +G A+DI
Sbjct: 74  IYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADI 133

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
              A+    IK+ +  +  +  G++ E +E   DRD   +A EA ++G VD ++  
Sbjct: 134 AIQAEQFHVIKKEMFRLNAEFTGQSIERIEADSDRDRWFTAQEALEYGFVDHIITR 189


>gi|91216686|ref|ZP_01253651.1| ATP-dependent Clp protease proteolytic subunit 2 [Psychroflexus
           torquis ATCC 700755]
 gi|91185155|gb|EAS71533.1| ATP-dependent Clp protease proteolytic subunit 2 [Psychroflexus
           torquis ATCC 700755]
          Length = 224

 Score =  225 bits (574), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 88/194 (45%), Positives = 128/194 (65%)

Query: 14  VFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQK 73
               + P ++E+      + D++SRL+ +RI+F+   I D +A +I AQLLFLE+ +  K
Sbjct: 30  TPSAMTPNIIEERQMNAVAMDVFSRLMMDRIIFLGLPINDQVANIIQAQLLFLESTDSSK 89

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I +YINSPGG V AG+ IYDTMQFIKP ++T   G AASMG++LL AG  G R  LP++
Sbjct: 90  DIQIYINSPGGSVYAGLGIYDTMQFIKPDVATINTGIAASMGAVLLCAGTAGKRSGLPHS 149

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           R+++HQP GG  GQA DIE  A  I+ +K  L  I  K+ GK+Y+EV +  DRD  M + 
Sbjct: 150 RVMIHQPMGGAQGQADDIEITANQIIMLKEELYTIISKHSGKSYDEVYQDGDRDFWMKSD 209

Query: 194 EACDWGVVDKVLMS 207
            A ++G++D++L  
Sbjct: 210 AAKEYGMIDEILTR 223


>gi|302404698|ref|XP_003000186.1| ATP-dependent Clp protease proteolytic subunit [Verticillium
           albo-atrum VaMs.102]
 gi|261360843|gb|EEY23271.1| ATP-dependent Clp protease proteolytic subunit [Verticillium
           albo-atrum VaMs.102]
          Length = 238

 Score =  225 bits (574), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 91/190 (47%), Positives = 137/190 (72%), Gaps = 7/190 (3%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           DI+S+LL+ERI+ + G I+D ++  I AQLL+LE++NP K I+LYINSPGG VT+G+AIY
Sbjct: 41  DIFSKLLQERIICLNGAIDDTVSASIVAQLLWLESDNPDKAITLYINSPGGSVTSGLAIY 100

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           DTM +IK P+ST C+G A+SMG+LLL+ GE G R+ALP++ +++HQP GG  GQASDI  
Sbjct: 101 DTMTYIKSPVSTVCLGAASSMGALLLTGGEAGKRYALPHSSVMIHQPLGGTQGQASDILI 160

Query: 154 HAQDIVKIKRRLNEIYVKN----CGK---TYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           +A  I +++ +LNEI  ++     G+   +  EV   ++RD  ++  EA + GV+D++L 
Sbjct: 161 YAHQIQRVRTKLNEIMRRHLNAAFGRDRYSLAEVNDMMERDKYLTPEEAKEMGVIDEILT 220

Query: 207 SRIDIEEKSK 216
            R + +EK +
Sbjct: 221 RRTEKDEKER 230


>gi|226360501|ref|YP_002778279.1| ATP-dependent Clp protease proteolytic subunit [Rhodococcus opacus
           B4]
 gi|226238986|dbj|BAH49334.1| ATP-dependent Clp protease proteolytic subunit [Rhodococcus opacus
           B4]
          Length = 220

 Score =  225 bits (574), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 90/209 (43%), Positives = 140/209 (66%), Gaps = 3/209 (1%)

Query: 2   SFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICA 61
           S  G A    +  +  ++P  +E ++ G +  + Y++L +ERI+F+  Q++D  A  + A
Sbjct: 9   SLGGQAPAGPQSRY--ILPSFIEHSSYGVKESNPYNKLFEERIIFLGVQVDDASANDVMA 66

Query: 62  QLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSA 121
           QLL LE+ +P ++I++YINSPGG  T+ MAIYDTMQ+++  I+T C+GQAAS  ++LL+A
Sbjct: 67  QLLVLESLDPDRDITMYINSPGGSFTSLMAIYDTMQYVRADITTVCLGQAASAAAVLLAA 126

Query: 122 GEKGMRFALPNARILLHQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           G  G R ALPNAR+L+HQP+ GG  GQ SD+E  A +I +++R +     K+ GK  + +
Sbjct: 127 GTPGKRLALPNARVLIHQPATGGIQGQVSDLEIQAAEIERMRRLMETTLAKHTGKDADVI 186

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRI 209
            K  DRD I++A+EA D+G++D VL  R 
Sbjct: 187 RKDTDRDKILTAAEAKDYGIIDDVLEYRK 215


>gi|111018381|ref|YP_701353.1| ATP-dependent Clp protease proteolytic subunit [Rhodococcus jostii
           RHA1]
 gi|116243108|sp|Q0SGZ1|CLPP1_RHOSR RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|110817911|gb|ABG93195.1| ATP-dependent Clp protease [Rhodococcus jostii RHA1]
          Length = 220

 Score =  225 bits (574), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 89/209 (42%), Positives = 139/209 (66%), Gaps = 3/209 (1%)

Query: 2   SFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICA 61
           S  G A    +  +  ++P  +E ++ G +  + Y++L +ERI+F+  Q++D  A  + A
Sbjct: 9   SLGGQAPAGPQSRY--ILPSFIEHSSYGVKESNPYNKLFEERIIFLGVQVDDASANDVMA 66

Query: 62  QLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSA 121
           QLL LE+ +P ++I++YINSPGG  T+ MAIYDTMQ+++  I+T C+GQAAS  ++LL+A
Sbjct: 67  QLLVLESLDPDRDITMYINSPGGSFTSLMAIYDTMQYVRADITTVCLGQAASAAAVLLAA 126

Query: 122 GEKGMRFALPNARILLHQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           G  G R ALPNAR+L+HQP+ GG  GQ SD+E  A +I +++R +     K+ GK    +
Sbjct: 127 GSPGKRLALPNARVLIHQPATGGIQGQVSDLEIQAAEIERMRRLMETTLAKHTGKDAAVI 186

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRI 209
            K  DRD I++A+EA ++G++D VL  R 
Sbjct: 187 RKDTDRDKILTAAEAKEYGIIDDVLEYRK 215


>gi|225562415|gb|EEH10694.1| ATP-dependent Clp protease proteolytic subunit [Ajellomyces
           capsulatus G186AR]
          Length = 229

 Score =  225 bits (574), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 92/171 (53%), Positives = 132/171 (77%), Gaps = 2/171 (1%)

Query: 42  ERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP 101
           ERIV + G++++ ++  I AQLLFLEA+NP+K I LYINSPGG VTAG+A+YDTM +I  
Sbjct: 45  ERIVCLNGEVDESLSASIVAQLLFLEADNPEKPIHLYINSPGGSVTAGLAVYDTMTYISA 104

Query: 102 PISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKI 161
           P+ST C+GQAASMGSLLL  G  G R+ LP++ +++HQPSGG+ GQA+DI  HA++I+++
Sbjct: 105 PVSTICVGQAASMGSLLLCGGHPGKRYCLPHSSVMVHQPSGGYFGQATDIAIHAKEILRV 164

Query: 162 KRRLNEIYVKNCGK--TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           +R+LNEIY  +  K  + +E+EK ++RD+ M A EA + G+VD++L  RI 
Sbjct: 165 RRQLNEIYKMHLTKEMSLDEIEKWMERDYFMGAREALEMGIVDEILDRRIK 215


>gi|269955920|ref|YP_003325709.1| endopeptidase Clp [Xylanimonas cellulosilytica DSM 15894]
 gi|269304601|gb|ACZ30151.1| Endopeptidase Clp [Xylanimonas cellulosilytica DSM 15894]
          Length = 236

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 92/194 (47%), Positives = 141/194 (72%), Gaps = 2/194 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++RI+F+  Q++D  A  + AQLL LE+++P ++I +
Sbjct: 36  VLPQFEERTAYGFKRQDPYTKLFEDRIIFLGVQVDDASADDVMAQLLVLESQDPDRDIMM 95

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  A+YDTMQ+IKP I T C+GQAAS  ++LL+AG+KG R+ALPNAR+L+
Sbjct: 96  YINSPGGSFTAMTALYDTMQYIKPQIQTVCLGQAASAAAVLLAAGQKGKRYALPNARVLI 155

Query: 138 HQPSGGFSG--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+    G  QASDIE HA ++++++  L E    + G+T E+V++ ++RD I++A++A
Sbjct: 156 HQPAMEGGGYAQASDIEIHANELIRMREWLEETLASHSGRTPEQVKEDIERDKILTAAQA 215

Query: 196 CDWGVVDKVLMSRI 209
            D+G+VD VL SR 
Sbjct: 216 KDYGLVDLVLESRK 229


>gi|116334974|ref|YP_802469.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Carsonella ruddii PV]
 gi|122940475|sp|Q05FR8|CLPP_CARRP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|116235255|dbj|BAF35103.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Carsonella ruddii PV]
          Length = 194

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 91/193 (47%), Positives = 143/193 (74%), Gaps = 1/193 (0%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P V+++  +G+R  D+YS++LKER++++ G IED MA+LI +QL+FL++E   K+I
Sbjct: 1   MIFLPTVIDKNIKGDRFLDLYSKMLKERVIYLNGAIEDTMASLIVSQLMFLDSE-NSKDI 59

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGGVV++G++IYDT+QF+K  +ST C+GQAASM ++LL+AG+KG RF  PN+RI
Sbjct: 60  ILYINSPGGVVSSGLSIYDTIQFLKSDVSTICIGQAASMAAVLLAAGKKGKRFCFPNSRI 119

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP G   GQASD+E HA++++ IK+ L EI   +   +  ++ K  DRD+ M+  + 
Sbjct: 120 MIHQPLGYAQGQASDVEIHAREMINIKQILCEILSSHTNNSIFQIFKDTDRDNFMNCKQT 179

Query: 196 CDWGVVDKVLMSR 208
             +G++D VL  +
Sbjct: 180 LKYGIIDNVLYKK 192


>gi|313836727|gb|EFS74441.1| Clp protease [Propionibacterium acnes HL037PA2]
 gi|314929867|gb|EFS93698.1| Clp protease [Propionibacterium acnes HL044PA1]
 gi|314972294|gb|EFT16391.1| Clp protease [Propionibacterium acnes HL037PA3]
          Length = 201

 Score =  225 bits (573), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 86/187 (45%), Positives = 125/187 (66%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +  M   +T     + ++Y  LL+ RIVF+  +++D  A  +CAQ+L L AE+P+ +I L
Sbjct: 1   MPAMAGPETGGAGMTDNVYQSLLRNRIVFLGSEVKDENANALCAQMLLLNAEDPEADIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG VT GMAIYDTMQ+I   ++T  MG AASMG  LL+AG  G R+ALP+A+IL+
Sbjct: 61  YINSPGGSVTGGMAIYDTMQWISNDVATVTMGMAASMGQFLLTAGTPGKRYALPHAKILM 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  G A++I  +A+ +   KR L+++   + G T E++ +  DRDH  +A EA D
Sbjct: 121 HQPLGGVGGTATEIAINAKMLKDTKRELSQLNADHSGHTLEQILEDSDRDHWFTAQEALD 180

Query: 198 WGVVDKV 204
           +G++D V
Sbjct: 181 YGLIDYV 187


>gi|111223669|ref|YP_714463.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
           [Frankia alni ACN14a]
 gi|111151201|emb|CAJ62912.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
           (partial match) [Frankia alni ACN14a]
          Length = 204

 Score =  225 bits (573), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 84/178 (47%), Positives = 116/178 (65%)

Query: 36  YSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDT 95
           + RLL+ RIVF+   +ED +A  I A+LL L AE+P  +I LYINSPGG V+AGMAIYDT
Sbjct: 2   FGRLLENRIVFLGAVVEDAVANAISAKLLLLAAEDPTSDIHLYINSPGGSVSAGMAIYDT 61

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           MQ++   ++T  +G A SMG  LL AG  G R+ALP+ARI++HQP GG  G A+DI   A
Sbjct: 62  MQYVGNDVATVALGFAGSMGQFLLCAGAAGKRYALPHARIMMHQPHGGIGGTAADISIQA 121

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
           + ++  KR L +    + G+T E++E   DRD   +A EA D+G+VD V+     +  
Sbjct: 122 EQMLYTKRTLQQRIAFHSGQTVEQIEADSDRDRWFTAEEARDYGLVDHVVERADQVPS 179


>gi|41408379|ref|NP_961215.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium avium
           subsp. paratuberculosis K-10]
 gi|118462557|ref|YP_880940.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium avium
           104]
 gi|67460505|sp|Q73XM8|CLPP2_MYCPA RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|41396735|gb|AAS04598.1| ClpP [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118163844|gb|ABK64741.1| Clp protease [Mycobacterium avium 104]
          Length = 199

 Score =  225 bits (573), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 85/176 (48%), Positives = 119/176 (67%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           +  +Y RLL ERI+F+  ++ D +A  +CAQ+L L AE+P K+ISLYINSPGG ++AGMA
Sbjct: 14  TDSVYERLLSERIIFLGSEVNDDVANRLCAQILLLAAEDPTKDISLYINSPGGSISAGMA 73

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYDTM      I+T+ MG AASMG  LL+AG KG R+ALP+ARIL+HQP GG +G A+DI
Sbjct: 74  IYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADI 133

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
              A+    IK+ +  +  +  G++ E +E   DRD   +A EA ++G VD ++  
Sbjct: 134 AIQAEQFHVIKKEMFRLNAEFTGQSIERIEADSDRDRWFTAQEALEYGFVDHIITR 189


>gi|21225558|ref|NP_631337.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           coelicolor A3(2)]
 gi|256783422|ref|ZP_05521853.1| ATP-dependent Clp protease proteolytic subunit 1 [Streptomyces
           lividans TK24]
 gi|289767298|ref|ZP_06526676.1| Clp protease [Streptomyces lividans TK24]
 gi|18203600|sp|Q9X7R9|CLPP3_STRCO RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
           AltName: Full=Endopeptidase Clp 3
 gi|4835314|emb|CAB42936.1| putative ATP-dependent Clp protease proteolytic subunit 1
           [Streptomyces coelicolor A3(2)]
 gi|289697497|gb|EFD64926.1| Clp protease [Streptomyces lividans TK24]
          Length = 217

 Score =  225 bits (573), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 87/198 (43%), Positives = 124/198 (62%), Gaps = 1/198 (0%)

Query: 19  VPMVVEQTNRGERSYD-IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            P   E      R  D +  +LL +RIV +  Q+++  A  +CAQLL L A++P+ +ISL
Sbjct: 13  TPRAEEGDTPATRFDDRLAEQLLDQRIVLLGTQVDEVSANRVCAQLLILSAQDPRTDISL 72

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG V AG+AIYDTM+ I   +ST  MG AASMG  LLS G  G R+ALPNARI++
Sbjct: 73  YVNSPGGSVHAGLAIYDTMRLIPNDVSTLAMGFAASMGQFLLSVGTAGKRYALPNARIMM 132

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPS G  G  +DIE  A ++   KR +  I  ++ G++ E + +  DRD   +A EA +
Sbjct: 133 HQPSAGIGGTTADIEIQADNLDFTKRTIERITAEHTGQSPETISRDGDRDRWFTAEEARE 192

Query: 198 WGVVDKVLMSRIDIEEKS 215
           +G+VD+V+ S  D+   +
Sbjct: 193 YGMVDQVVQSLADVRPAA 210


>gi|23004911|ref|ZP_00048001.1| COG0740: Protease subunit of ATP-dependent Clp proteases
           [Magnetospirillum magnetotacticum MS-1]
          Length = 177

 Score =  225 bits (573), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 103/162 (63%), Positives = 134/162 (82%)

Query: 50  QIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMG 109
            +ED  A+LI AQLLFLEAENP+KEIS YINSPGGVVT+G++IYDTMQFI+ P++T C+G
Sbjct: 12  PLEDQGASLIVAQLLFLEAENPKKEISFYINSPGGVVTSGLSIYDTMQFIRCPVTTLCVG 71

Query: 110 QAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIY 169
           QAASMGSLLL+AGE G RFALPNARI++HQPSGGF GQA+DI  HA++I  +K+RLNEIY
Sbjct: 72  QAASMGSLLLAAGEAGHRFALPNARIMVHQPSGGFQGQATDILIHAREIEALKKRLNEIY 131

Query: 170 VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           VK+ G+ YE + + L+RD+ M+A  A ++G++D +L  R + 
Sbjct: 132 VKHTGRDYETIHQALERDNFMTADAAKEFGLIDDILHKRPET 173


>gi|291456562|ref|ZP_06595952.1| Clp protease [Bifidobacterium breve DSM 20213]
 gi|291381839|gb|EFE89357.1| Clp protease [Bifidobacterium breve DSM 20213]
          Length = 227

 Score =  225 bits (573), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 85/192 (44%), Positives = 137/192 (71%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T  G ++ D YSRL ++RI+F+  Q++D  A  + AQLL LE+++P +++ +
Sbjct: 35  IMPQFVEKTPYGMKTQDAYSRLFEDRIIFLGVQVDDASADDVMAQLLVLESQDPNRDVMM 94

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL++G KG R  LPNAR+L+
Sbjct: 95  YINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLASGTKGKRLMLPNARVLI 154

Query: 138 HQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+     G+A++IE  A+++++++  L E   K+ G+  E++ + ++ D  ++A EA 
Sbjct: 155 HQPAIDQGFGKATEIEIQAKEMLRMREWLEETLAKHTGQDVEKIRRDIEVDTFLTADEAK 214

Query: 197 DWGVVDKVLMSR 208
           D+G+VD+VL  R
Sbjct: 215 DYGIVDEVLAHR 226


>gi|297563812|ref|YP_003682785.1| Endopeptidase Clp [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
 gi|296848261|gb|ADH70279.1| Endopeptidase Clp [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
          Length = 219

 Score =  225 bits (573), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 77/189 (40%), Positives = 122/189 (64%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           ++T+ G     + +RLL+ RIV +  Q+++  A  +CAQ+L L  E+P+++I+L +NSPG
Sbjct: 9   DETSGGAFDDQLATRLLRSRIVLLGTQVDEASANRVCAQILLLADEDPRRDITLAVNSPG 68

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           G V+AG+AIYD M F+   +ST  MG AASMG  L   G  G R++LP+ARI++HQPSGG
Sbjct: 69  GSVSAGLAIYDVMNFVPNDVSTLVMGFAASMGQFLACVGTPGKRYSLPHARIMMHQPSGG 128

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
             G A+DI   A+++   K+ +  +  K+ G+T E + +   RD   +A EA ++G VD 
Sbjct: 129 LGGTAADIAIQAENLAHTKQTMVRLIAKHTGQTEETISRDQHRDAWFTAQEAREYGFVDH 188

Query: 204 VLMSRIDIE 212
           V+ S  +++
Sbjct: 189 VVASVAEMD 197


>gi|296087193|emb|CBI33567.3| unnamed protein product [Vitis vinifera]
          Length = 185

 Score =  225 bits (573), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 77/168 (45%), Positives = 122/168 (72%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           LL++RIVF+  Q++D  A L+ +QLLFL+AE+ +K+I L+INSPGG VTAG+ IYD M+ 
Sbjct: 2   LLRQRIVFLGSQVDDMTADLVISQLLFLDAEDQEKDIKLFINSPGGSVTAGLGIYDAMKL 61

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
            K  +ST C+G AASMG+ LL++G KG RF +PN+R+++HQP G   G+A+++    +++
Sbjct: 62  CKADVSTVCLGLAASMGAFLLASGSKGKRFCMPNSRVMIHQPLGTAGGKATEMGIRIREM 121

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           +  K +LN+I  +  GK  +++E   DRD+ M+A EA ++G++D V+ 
Sbjct: 122 MYHKIKLNKILSRITGKPEQQIEADTDRDNFMNAWEAKEYGLIDAVID 169


>gi|256375294|ref|YP_003098954.1| endopeptidase Clp [Actinosynnema mirum DSM 43827]
 gi|255919597|gb|ACU35108.1| Endopeptidase Clp [Actinosynnema mirum DSM 43827]
          Length = 209

 Score =  225 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 86/193 (44%), Positives = 134/193 (69%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T+ G +  + Y++L +ERI+F+  Q++D  A  + AQLL LE+E+P ++I +
Sbjct: 12  VLPSFVERTSYGVKESNPYNKLFEERIIFLGVQVDDASANDVMAQLLVLESEDPDRDILM 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQF++P I T+C+GQA+S  ++LL+AG  G R ALPNAR+L+
Sbjct: 72  YINSPGGSFTSLMAIYDTMQFVRPDIQTYCLGQASSAAAVLLAAGTPGKRHALPNARVLI 131

Query: 138 HQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+     GQ SD+E  + +I +++R L      +  ++ E+V   ++RD I++A EA 
Sbjct: 132 HQPATEGVYGQVSDLEIQSNEIQRVRRLLESTLAHHTNRSPEQVRADIERDKILTAEEAK 191

Query: 197 DWGVVDKVLMSRI 209
           ++G+VD VL  R 
Sbjct: 192 EYGIVDTVLPYRK 204


>gi|294790933|ref|ZP_06756091.1| Clp protease [Scardovia inopinata F0304]
 gi|294458830|gb|EFG27183.1| Clp protease [Scardovia inopinata F0304]
          Length = 210

 Score =  225 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 90/192 (46%), Positives = 133/192 (69%), Gaps = 1/192 (0%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           L + P + E    G     I++RLLK+RI+++  +++D  A +ICAQ+L L AE+P K+I
Sbjct: 5   LPISPRMDEGQGMGIPDP-IFNRLLKDRIIWLGSEVKDENANVICAQMLMLAAEDPTKDI 63

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG +TAGMAIYDTMQ I+P ++T  +G AASMG  LLS+G KG RF   +AR+
Sbjct: 64  WLYINSPGGSITAGMAIYDTMQLIEPDVATVAVGMAASMGQFLLSSGTKGKRFITSHARV 123

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           L+HQPSGG  G A+D+  +A+ I+ +K+ L+E+  +  G T EE+ +  + DH  +A +A
Sbjct: 124 LMHQPSGGVGGTATDVRINAELIMDMKKTLSELTAEQTGHTLEEIYRDNEYDHWFTAQQA 183

Query: 196 CDWGVVDKVLMS 207
            D+G VDK++ +
Sbjct: 184 LDYGFVDKIVTT 195


>gi|152967459|ref|YP_001363243.1| endopeptidase Clp [Kineococcus radiotolerans SRS30216]
 gi|151361976|gb|ABS04979.1| Endopeptidase Clp [Kineococcus radiotolerans SRS30216]
          Length = 235

 Score =  224 bits (572), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 89/194 (45%), Positives = 137/194 (70%), Gaps = 2/194 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T+ G +  D Y++L ++RIVF+  Q++D  A  I AQL+ LE+++ +++I +
Sbjct: 36  VLPQFEERTSYGMKRSDPYTKLFEDRIVFLGVQVDDASADDIIAQLIVLESQDTERDIIM 95

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+I+P I T+CMGQAAS  ++LL AG  G RFALPN+RIL+
Sbjct: 96  YINSPGGSFTALTAIYDTMQYIRPDIQTYCMGQAASAAAVLLGAGAPGKRFALPNSRILI 155

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  +GG  GQASD+E  A +I++++  L      +  +T ++V + ++RD  ++A EA
Sbjct: 156 HQPAMAGGDYGQASDLEIQANEILRMRSWLESTLAFHSHRTADQVREDIERDKFLTAREA 215

Query: 196 CDWGVVDKVLMSRI 209
            ++G++D+VL SR 
Sbjct: 216 VEYGLIDEVLTSRK 229


>gi|227548722|ref|ZP_03978771.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227079189|gb|EEI17152.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 206

 Score =  224 bits (572), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 86/210 (40%), Positives = 140/210 (66%), Gaps = 8/210 (3%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           M+F+    +        ++P  +E+T+ G +  D Y +L +ERIVF+  Q++D  A  + 
Sbjct: 1   MNFQMPTSRY-------VLPQFLEETSFGTKQIDPYGKLFEERIVFLGTQVDDTSANDVM 53

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLL LE+++P ++I++YINSPGG  TA MAIYDTMQ+++P + T C+GQAAS  +++L+
Sbjct: 54  AQLLVLESQDPDRDITMYINSPGGSFTALMAIYDTMQYVRPDVQTVCLGQAASAAAVILA 113

Query: 121 AGEKGMRFALPNARILLHQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
           AG  G R ALPN+R+L+HQP+     GQ SD+E  A +I +++R +     ++ G++ E+
Sbjct: 114 AGAPGKRAALPNSRVLIHQPATQGTQGQVSDLEIQAAEIERMRRLMESTLAEHTGRSAEQ 173

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           + K  DRD I++A EA ++G++D+V   R 
Sbjct: 174 IRKDTDRDKILTADEAVEYGIIDQVFDYRK 203


>gi|317508500|ref|ZP_07966167.1| Clp protease [Segniliparus rugosus ATCC BAA-974]
 gi|316253191|gb|EFV12594.1| Clp protease [Segniliparus rugosus ATCC BAA-974]
          Length = 200

 Score =  224 bits (572), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 85/180 (47%), Positives = 125/180 (69%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           +  ++ RLL+ERI+F+  +++D +A  +CAQ+L L AE+P K+ISLYINSPGG ++AGMA
Sbjct: 18  TDSVFERLLRERIIFLGSEVDDDIANRLCAQILLLTAEDPTKDISLYINSPGGSISAGMA 77

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYDTMQ  +  ++T+ MG AASMG  LL+AG KG RFALP+ARI++HQPS G  G A+DI
Sbjct: 78  IYDTMQLSECEVATYAMGMAASMGQFLLAAGAKGKRFALPHARIMMHQPSAGIYGAAADI 137

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
              A+ +   K+ +  +  +  G+T E++ +  +RD   +A+EA D+G VD V+     I
Sbjct: 138 AIQAEQLAATKKEMTRLNAEFTGQTVEKIHEDSERDRWFTAAEAKDYGFVDHVISRAAKI 197


>gi|308803947|ref|XP_003079286.1| COG0740: Protease subunit of ATP-dependent Clp proteases (ISS)
           [Ostreococcus tauri]
 gi|116057741|emb|CAL53944.1| COG0740: Protease subunit of ATP-dependent Clp proteases (ISS)
           [Ostreococcus tauri]
          Length = 306

 Score =  224 bits (572), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 88/179 (49%), Positives = 120/179 (67%)

Query: 27  NRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVV 86
            R     D +  LLK RIVF+  Q++D  A  + +QLL L+ ++P KEI L+INSPGG V
Sbjct: 78  PRDGAGGDPFGALLKNRIVFLGHQVDDFNADAVISQLLLLDQQDPTKEIKLFINSPGGSV 137

Query: 87  TAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG 146
           TAGM IYD MQF + P+ST C+G AASMG+ LL++GEKG R ++PNARI++HQP GG  G
Sbjct: 138 TAGMGIYDAMQFCRAPVSTVCLGLAASMGAFLLASGEKGRRMSMPNARIMIHQPLGGAQG 197

Query: 147 QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            A DIE  A++I+  K  LN +   + G+  E +++  DRD  MS  EA  +GV+D V+
Sbjct: 198 SAVDIEIQAKEIMYHKANLNRLMAFHTGQKVETIDEDTDRDRYMSPLEAKQYGVIDIVI 256


>gi|269125774|ref|YP_003299144.1| endopeptidase Clp [Thermomonospora curvata DSM 43183]
 gi|268310732|gb|ACY97106.1| Endopeptidase Clp [Thermomonospora curvata DSM 43183]
          Length = 223

 Score =  224 bits (572), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 93/193 (48%), Positives = 138/193 (71%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T  G +  + Y++L +ERI+F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 23  IIPSFVERTTYGVKEMNPYNKLFEERIIFLGVQIDDASANDVMAQLLTLESIDPDRDISM 82

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA MAIYDTMQ+++P I T C+GQAAS  ++LL+AG  G R ALPN+RIL+
Sbjct: 83  YINSPGGSFTAMMAIYDTMQYVRPDIQTVCIGQAASAAAVLLAAGTPGKRAALPNSRILI 142

Query: 138 HQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+     GQ+SDIE  A++I++I+  L EI  ++ G+  E+V K ++RD I++A +A 
Sbjct: 143 HQPATEGTYGQSSDIEIQAREIMRIRELLEEIISRHSGQPIEKVRKDIERDKILTAEDAK 202

Query: 197 DWGVVDKVLMSRI 209
            +G+VD V +SR 
Sbjct: 203 AYGLVDDVFVSRK 215


>gi|154279296|ref|XP_001540461.1| ATP-dependent Clp protease proteolytic subunit [Ajellomyces
           capsulatus NAm1]
 gi|150412404|gb|EDN07791.1| ATP-dependent Clp protease proteolytic subunit [Ajellomyces
           capsulatus NAm1]
          Length = 211

 Score =  224 bits (572), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 92/171 (53%), Positives = 132/171 (77%), Gaps = 2/171 (1%)

Query: 42  ERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP 101
           ERIV + G++++ ++  I AQLLFLEA+NP+K I LYINSPGG VTAG+A+YDTM +I  
Sbjct: 27  ERIVCLNGEVDESLSASIVAQLLFLEADNPEKPIHLYINSPGGSVTAGLAVYDTMTYISA 86

Query: 102 PISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKI 161
           P+ST C+GQAASMGSLLL  G  G R+ LP++ +++HQPSGG+ GQA+DI  HA++I+++
Sbjct: 87  PVSTICVGQAASMGSLLLCGGHPGKRYCLPHSSVMVHQPSGGYFGQATDIAIHAKEILRV 146

Query: 162 KRRLNEIYVKNCGK--TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           +R+LNEIY  +  K  + +E+EK ++RD+ M A EA + G+VD++L  RI 
Sbjct: 147 RRQLNEIYKMHLTKEMSLDEIEKWMERDYFMGAREALEMGIVDEILDRRIK 197


>gi|260906247|ref|ZP_05914569.1| ATP-dependent Clp protease proteolytic subunit [Brevibacterium
           linens BL2]
          Length = 210

 Score =  224 bits (571), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 89/196 (45%), Positives = 134/196 (68%), Gaps = 2/196 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L  +R++F+  Q++D  A  + AQLL LE+++P ++I+L
Sbjct: 15  VMPQFEERTPYGFKRQDPYTKLFDDRVIFLGVQVDDTSADDVMAQLLVLESQDPDRDITL 74

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+IKP I T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 75  YINSPGGSFTAMTAIYDTMQYIKPEIQTVCLGQAASAAAVLLAAGTPGKRLALPNARVLI 134

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+  G   GQASDIE  A ++ ++++ L      +  K+ E+V   ++RD  ++A +A
Sbjct: 135 HQPAMEGQGQGQASDIEIQAAEVFRMRQWLETTLSDHSNKSPEQVSNDIERDLFLTAEQA 194

Query: 196 CDWGVVDKVLMSRIDI 211
            D+G+VD+VL SR  +
Sbjct: 195 KDYGLVDQVLTSRKAV 210


>gi|88855133|ref|ZP_01129798.1| ATP-dependent Clp protease proteolytic subunit [marine
           actinobacterium PHSC20C1]
 gi|88815661|gb|EAR25518.1| ATP-dependent Clp protease proteolytic subunit [marine
           actinobacterium PHSC20C1]
          Length = 224

 Score =  224 bits (571), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 93/207 (44%), Positives = 142/207 (68%), Gaps = 4/207 (1%)

Query: 5   GCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLL 64
           G  + D +  +  ++P   E+T  G +  D Y++L ++RI+F+  QI+D  A  + AQLL
Sbjct: 13  GIGRPDVDARY--ILPTFEERTAYGYKRQDPYAKLFEDRIIFLGVQIDDASADDVMAQLL 70

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
            LE+++P ++I +YINSPGG  TA  AIYDTMQ+I+P I T  +GQAAS  +++ + G K
Sbjct: 71  VLESQDPDRDIVMYINSPGGSFTAMTAIYDTMQYIRPHIQTVVLGQAASAAAVITAGGTK 130

Query: 125 GMRFALPNARILLHQPSGGFSG--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
           G R ALPNARI++HQP+GG  G  QASDIE  A++I++++  L E    +  +T E+V K
Sbjct: 131 GKRLALPNARIMIHQPAGGSEGSSQASDIEIQAREILRMRTWLEETLSHHSNRTAEQVNK 190

Query: 183 TLDRDHIMSASEACDWGVVDKVLMSRI 209
            ++RD I+SA+EA ++G++D+VL SR 
Sbjct: 191 DIERDKILSATEAVEYGLIDQVLTSRK 217


>gi|319947980|ref|ZP_08022157.1| ATP-dependent Clp protease proteolytic subunit [Dietzia cinnamea
           P4]
 gi|319438326|gb|EFV93269.1| ATP-dependent Clp protease proteolytic subunit [Dietzia cinnamea
           P4]
          Length = 207

 Score =  224 bits (571), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 88/193 (45%), Positives = 135/193 (69%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE ++ G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE ++P ++I++
Sbjct: 10  ILPSFVEHSSYGVKESNPYNKLFEERIIFLGTQVDDASANDIMAQLLVLEGQDPDRDITM 69

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++P + T C+GQAAS  ++LL+AG KG R ALPNARIL+
Sbjct: 70  YINSPGGSFTSLMAIYDTMQYVRPDVVTVCLGQAASAAAVLLAAGTKGKRAALPNARILI 129

Query: 138 HQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+ GG  GQ SD+E  A +I +++R +     ++ G+  +++ K  DRD I++A EA 
Sbjct: 130 HQPATGGIQGQVSDLEIQAAEIERMRRLMETTLARHTGRDADQIRKDTDRDKILTAEEAK 189

Query: 197 DWGVVDKVLMSRI 209
           D+G++D V   R 
Sbjct: 190 DYGIIDTVFDYRK 202


>gi|296453941|ref|YP_003661084.1| endopeptidase Clp [Bifidobacterium longum subsp. longum JDM301]
 gi|296183372|gb|ADH00254.1| Endopeptidase Clp [Bifidobacterium longum subsp. longum JDM301]
          Length = 233

 Score =  224 bits (571), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 84/192 (43%), Positives = 137/192 (71%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T  G ++ D YSRL ++RI+F+  Q++D  A  + AQLL LE+++P +++ +
Sbjct: 41  IMPQFVEKTPYGMKTQDAYSRLFEDRIIFLGVQVDDASADDVMAQLLVLESQDPNRDVMM 100

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL++G KG R  LPNAR+L+
Sbjct: 101 YINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLASGTKGKRLMLPNARVLI 160

Query: 138 HQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+     G+A++IE  A+++++++  L E   K+ G+  E++ + ++ D  ++A EA 
Sbjct: 161 HQPAIDQGFGKATEIEIQAKEMLRMREWLEETLAKHTGQDVEKIRRDIEVDTFLTAPEAK 220

Query: 197 DWGVVDKVLMSR 208
           ++G+VD+VL  R
Sbjct: 221 EYGIVDEVLEHR 232


>gi|296139184|ref|YP_003646427.1| endopeptidase Clp [Tsukamurella paurometabola DSM 20162]
 gi|296027318|gb|ADG78088.1| Endopeptidase Clp [Tsukamurella paurometabola DSM 20162]
          Length = 197

 Score =  224 bits (571), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 83/178 (46%), Positives = 123/178 (69%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +YSRLL+ RI+F+  ++ D +A  +CAQ+L L AE+P K+I+LYINSPGG ++AGMAI+D
Sbjct: 20  VYSRLLESRIIFLGSEVNDDIANQLCAQMLLLSAEDPSKDINLYINSPGGSISAGMAIFD 79

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM+F++  ++T+ MG AASMG  LL+AG KG R+ALP+ARI++HQPS G  G A+DI   
Sbjct: 80  TMEFVECDVATYAMGMAASMGEFLLAAGAKGKRYALPHARIMMHQPSAGIGGTAADIAIQ 139

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
           A+     K  +N +  +  G+  E++E   DRD   +A +A D+G VD V+     ++
Sbjct: 140 AELFRNTKVEMNRLNAQFTGQPIEKIEADADRDKWFTAEQARDYGFVDHVVSRASSVK 197


>gi|323449038|gb|EGB04929.1| hypothetical protein AURANDRAFT_38757 [Aureococcus anophagefferens]
          Length = 273

 Score =  224 bits (571), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 88/202 (43%), Positives = 139/202 (68%), Gaps = 2/202 (0%)

Query: 8   KKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           ++D E     + P+ +   + G+   D+ SRLL++RI+ +   ++D +A ++ AQLL+L 
Sbjct: 61  RRDPEKP--SIPPVRMPMVDTGDGQMDVISRLLRDRILLLGRGVDDEVANVLVAQLLYLA 118

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
            ++P K+I+LYINSPGG V+AGMAIYDTMQF+   +ST C G AASMG+ LL AG KG R
Sbjct: 119 NDDPTKDITLYINSPGGSVSAGMAIYDTMQFVPCDVSTVCFGTAASMGAFLLGAGAKGKR 178

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
            +LPN+RI++HQP GG  GQA+DIE  A++I+ ++++LN    +  G+  +++E+  DRD
Sbjct: 179 RSLPNSRIMIHQPLGGAQGQAADIEIQAKEILFVRQQLNTFISEYTGQPMDKIEEDCDRD 238

Query: 188 HIMSASEACDWGVVDKVLMSRI 209
             M   EA  +G++D+V+ ++ 
Sbjct: 239 FFMCPEEALSYGLIDEVVKTKT 260


>gi|312140360|ref|YP_004007696.1| clp peptidase proteolytic subunit 2 clpp2 [Rhodococcus equi 103S]
 gi|325676030|ref|ZP_08155713.1| ATP-dependent Clp protease, protease subunit [Rhodococcus equi ATCC
           33707]
 gi|311889699|emb|CBH49016.1| Clp peptidase proteolytic subunit 2 ClpP2 [Rhodococcus equi 103S]
 gi|325553268|gb|EGD22947.1| ATP-dependent Clp protease, protease subunit [Rhodococcus equi ATCC
           33707]
          Length = 223

 Score =  224 bits (571), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 86/193 (44%), Positives = 134/193 (69%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +E ++ G +  + Y++L +ERI+F+  Q++D  A  + AQLL LE+ +P ++I++
Sbjct: 26  ILPSFIEHSSYGVKESNPYNKLFEERIIFLGVQVDDASANDVMAQLLVLESLDPDRDITM 85

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++  I+T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 86  YINSPGGSFTSLMAIYDTMQYVRADITTVCLGQAASAAAVLLAAGTPGKRLALPNARVLI 145

Query: 138 HQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+ GG  GQ SD+E  A +I +++R +     K+ GK  + + K  DRD I++A EA 
Sbjct: 146 HQPATGGIQGQVSDLEIQAAEIERMRRLMETTLGKHTGKDPDVIRKDTDRDKILTAEEAK 205

Query: 197 DWGVVDKVLMSRI 209
           ++G++D VL  R 
Sbjct: 206 EYGIIDDVLQYRK 218


>gi|300741666|ref|ZP_07071687.1| Clp protease [Rothia dentocariosa M567]
 gi|300380851|gb|EFJ77413.1| Clp protease [Rothia dentocariosa M567]
          Length = 223

 Score =  224 bits (571), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 101/211 (47%), Positives = 150/211 (71%), Gaps = 5/211 (2%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS  G A +   + +  ++P   E+T  G +  D Y++L ++RI+F+  Q++D  A  + 
Sbjct: 1   MS-HGSAPQVPSNRY--VLPSFEERTPYGYKRQDPYAKLFEDRIIFLGTQVDDSSADDVM 57

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLL LEA++P ++I+LYINSPGG  TA  AIYDTMQFI+P I T C+GQAAS  ++LL+
Sbjct: 58  AQLLVLEAQDPDRDITLYINSPGGSFTAMTAIYDTMQFIRPEIQTVCLGQAASAAAVLLA 117

Query: 121 AGEKGMRFALPNARILLHQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYE 178
           AG  G R ALPNAR+L+HQP  SG   GQASD+E HA ++++++    +    + GKTYE
Sbjct: 118 AGTPGKRLALPNARVLIHQPALSGQQRGQASDLEIHANEVMRMREWTAQTLALHSGKTYE 177

Query: 179 EVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           EV+++++RD+I++A+EA ++G+VDKVL SR 
Sbjct: 178 EVDRSIERDNILTAAEAQEYGLVDKVLESRK 208


>gi|15827778|ref|NP_302041.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           leprae TN]
 gi|221230255|ref|YP_002503671.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           leprae Br4923]
 gi|13093330|emb|CAC30430.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           leprae]
 gi|219933362|emb|CAR71574.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           leprae Br4923]
          Length = 224

 Score =  224 bits (571), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 86/186 (46%), Positives = 123/186 (66%), Gaps = 1/186 (0%)

Query: 23  VEQTNRGERSYD-IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS 81
           +   ++G    D +Y RLL ERI+F+  ++ D++A  +CAQ+L L AE+  K+ISLYINS
Sbjct: 31  IRSNSQGFNLTDSVYERLLSERIIFLGSEVNDNIANRLCAQILLLAAEDAFKDISLYINS 90

Query: 82  PGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
           PGG ++AGMAIYDTM      I+T+ MG AASMG  LL+AG +G R+ALP+ARIL+HQP 
Sbjct: 91  PGGSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTRGKRYALPHARILMHQPL 150

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
           GG +G A+DI   A+    IK+ +  +  +  G+  E +E   DRD   +ASEA ++G V
Sbjct: 151 GGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTASEALEYGFV 210

Query: 202 DKVLMS 207
           D ++  
Sbjct: 211 DHIITR 216


>gi|256375241|ref|YP_003098901.1| endopeptidase Clp [Actinosynnema mirum DSM 43827]
 gi|255919544|gb|ACU35055.1| Endopeptidase Clp [Actinosynnema mirum DSM 43827]
          Length = 209

 Score =  224 bits (571), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 88/193 (45%), Positives = 140/193 (72%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T+ G +  + Y++L +ERI+F+  Q++D  A  + AQLL LE+++P ++I +
Sbjct: 12  VLPSFVERTSYGVKESNPYNKLFEERIIFLGVQVDDTSANDVMAQLLVLESDDPDRDIYM 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA MAIYDTMQF++P I T C+GQA+S  ++LL+AG  G R ALPNAR+++
Sbjct: 72  YINSPGGSFTALMAIYDTMQFVRPDIRTVCLGQASSAAAVLLAAGTPGKRTALPNARVMI 131

Query: 138 HQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+ GG  GQ SD+E  A +I +++ ++ E   ++ G+T E+V   +DRD I++A+EA 
Sbjct: 132 HQPAMGGVRGQVSDLEIQAAEITRMRTQMEEALSRHTGRTVEQVHTDIDRDRILTAAEAQ 191

Query: 197 DWGVVDKVLMSRI 209
           ++G++D+V+  R 
Sbjct: 192 EYGIIDEVMPYRK 204


>gi|219124070|ref|XP_002182335.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406296|gb|EEC46236.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 214

 Score =  224 bits (571), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 86/198 (43%), Positives = 128/198 (64%), Gaps = 2/198 (1%)

Query: 19  VPMVVEQTNRGE--RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    +     DIY+RL +ERI+F+  +I+D +A  +   +L+L++E+  K I 
Sbjct: 16  VPKVAYRVPGSQSADWVDIYNRLYRERIIFLGAEIDDELANQVIGVMLYLDSEDSSKPIY 75

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG V +G+AI+D MQ IK  + T  +G AASMGS +L AG KG R ALP++R +
Sbjct: 76  LYINSPGGSVISGLAIFDAMQHIKSEVITINLGLAASMGSFILGAGSKGKRLALPSSRTM 135

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQA DI+  A  I++I+  L + Y    G+T + + + LDRD+ MSA EA 
Sbjct: 136 IHQPMGGAQGQAEDIKVEAAQIMRIRDNLVKSYSMMTGQTQDRIIQDLDRDNFMSAQEAM 195

Query: 197 DWGVVDKVLMSRIDIEEK 214
           ++G+VD+VL    + + +
Sbjct: 196 EYGLVDRVLDYNKNTDSQ 213


>gi|159036302|ref|YP_001535555.1| endopeptidase Clp [Salinispora arenicola CNS-205]
 gi|157915137|gb|ABV96564.1| Endopeptidase Clp [Salinispora arenicola CNS-205]
          Length = 194

 Score =  224 bits (571), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 79/194 (40%), Positives = 127/194 (65%), Gaps = 2/194 (1%)

Query: 22  VVEQTNRGERSY--DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           ++   + G R +   ++ RLLKERIVF+  ++ D  A  ICAQ+L L AE+P ++I LYI
Sbjct: 1   MIRMLDDGPRGFGDQVFERLLKERIVFLGTEVTDESANRICAQILLLAAEDPDRDIMLYI 60

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V+AGMA+YDTM+F+   ++T  +G A SMG  LL AG  G R+ALP++ IL+HQ
Sbjct: 61  NSPGGSVSAGMAVYDTMRFVHNDVATLALGMAGSMGQFLLCAGAAGKRYALPHSWILMHQ 120

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           PSGG  G A+D+   A++++ +K+    +  ++ G+T  E+++  DRD   +  +A ++G
Sbjct: 121 PSGGMGGTAADVRIQAENLLYVKKTTQGLIAQHSGRTLAEIQRDWDRDRWFTPEQAREYG 180

Query: 200 VVDKVLMSRIDIEE 213
           ++D V+    ++  
Sbjct: 181 LIDHVIAQAAELTS 194


>gi|213692575|ref|YP_002323161.1| Endopeptidase Clp [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213524036|gb|ACJ52783.1| Endopeptidase Clp [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|320458727|dbj|BAJ69348.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           longum subsp. infantis ATCC 15697]
          Length = 233

 Score =  223 bits (570), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 83/192 (43%), Positives = 137/192 (71%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T  G ++ D YSRL ++RI+F+  Q++D  A  + AQLL LE+++P +++ +
Sbjct: 41  IMPQFVEKTPYGMKTQDAYSRLFEDRIIFLGVQVDDASADDVMAQLLVLESQDPNRDVMM 100

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL++G +G R  LPNAR+L+
Sbjct: 101 YINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLASGTEGKRLMLPNARVLI 160

Query: 138 HQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+     G+A++IE  A+++++++  L E   K+ G+  E++ + ++ D  ++A EA 
Sbjct: 161 HQPAIDQGFGKATEIEIQAKEMLRMREWLEETLAKHTGQDVEKIRRDIEVDTFLTAPEAK 220

Query: 197 DWGVVDKVLMSR 208
           ++G+VD+VL  R
Sbjct: 221 EYGIVDEVLEHR 232


>gi|126030155|pdb|2C8T|A Chain A, The 3.0 A Resolution Structure Of Caseinolytic Clp
           Protease 1 From Mycobacterium Tuberculosis
 gi|126030156|pdb|2C8T|B Chain B, The 3.0 A Resolution Structure Of Caseinolytic Clp
           Protease 1 From Mycobacterium Tuberculosis
 gi|126030157|pdb|2C8T|C Chain C, The 3.0 A Resolution Structure Of Caseinolytic Clp
           Protease 1 From Mycobacterium Tuberculosis
 gi|126030158|pdb|2C8T|D Chain D, The 3.0 A Resolution Structure Of Caseinolytic Clp
           Protease 1 From Mycobacterium Tuberculosis
 gi|126030159|pdb|2C8T|E Chain E, The 3.0 A Resolution Structure Of Caseinolytic Clp
           Protease 1 From Mycobacterium Tuberculosis
 gi|126030160|pdb|2C8T|F Chain F, The 3.0 A Resolution Structure Of Caseinolytic Clp
           Protease 1 From Mycobacterium Tuberculosis
 gi|126030161|pdb|2C8T|G Chain G, The 3.0 A Resolution Structure Of Caseinolytic Clp
           Protease 1 From Mycobacterium Tuberculosis
 gi|126030162|pdb|2C8T|H Chain H, The 3.0 A Resolution Structure Of Caseinolytic Clp
           Protease 1 From Mycobacterium Tuberculosis
 gi|126030163|pdb|2C8T|I Chain I, The 3.0 A Resolution Structure Of Caseinolytic Clp
           Protease 1 From Mycobacterium Tuberculosis
 gi|126030164|pdb|2C8T|J Chain J, The 3.0 A Resolution Structure Of Caseinolytic Clp
           Protease 1 From Mycobacterium Tuberculosis
 gi|126030165|pdb|2C8T|K Chain K, The 3.0 A Resolution Structure Of Caseinolytic Clp
           Protease 1 From Mycobacterium Tuberculosis
 gi|126030166|pdb|2C8T|L Chain L, The 3.0 A Resolution Structure Of Caseinolytic Clp
           Protease 1 From Mycobacterium Tuberculosis
 gi|126030167|pdb|2C8T|M Chain M, The 3.0 A Resolution Structure Of Caseinolytic Clp
           Protease 1 From Mycobacterium Tuberculosis
 gi|126030168|pdb|2C8T|N Chain N, The 3.0 A Resolution Structure Of Caseinolytic Clp
           Protease 1 From Mycobacterium Tuberculosis
          Length = 206

 Score =  223 bits (570), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 84/176 (47%), Positives = 118/176 (67%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           +  +Y RLL ERI+F+  ++ D +A  +CAQ+L L AE+  K+ISLYINSPGG ++AGMA
Sbjct: 18  TDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMA 77

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYDTM      I+T+ MG AASMG  LL+AG KG R+ALP+ARIL+HQP GG +G A+DI
Sbjct: 78  IYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADI 137

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
              A+    IK+ +  +  +  G+  E +E   DRD   +A+EA ++G VD ++  
Sbjct: 138 AIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITR 193


>gi|119716962|ref|YP_923927.1| ClpP1 peptidase. Serine peptidase. MEROPS family S14 [Nocardioides
           sp. JS614]
 gi|119537623|gb|ABL82240.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nocardioides
           sp. JS614]
          Length = 200

 Score =  223 bits (570), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 79/170 (46%), Positives = 115/170 (67%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
            RLL +RI+ +  Q++D +A  +CA+LL L AE+P ++I+LYINSPGG V+AG+AIYDTM
Sbjct: 14  DRLLHQRIIVLGQQVDDDIANKLCAELLLLSAEDPHRDIALYINSPGGSVSAGLAIYDTM 73

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQ 156
           + I   +ST  MG AASMG  LLSAG  G R+ALP++R+L+HQ S G  G A DIE  A+
Sbjct: 74  RLIPNDVSTLAMGLAASMGQFLLSAGTPGKRYALPHSRVLMHQGSAGIGGTAIDIEIQAE 133

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           ++   K  +  +  ++ G+  E +E+   RD   +A +A ++G VD+VL 
Sbjct: 134 NLEHTKNVMTGLIAEHTGQPVEVIERDSLRDRWFTAEQAREYGFVDRVLT 183


>gi|240170932|ref|ZP_04749591.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           kansasii ATCC 12478]
          Length = 202

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 85/176 (48%), Positives = 118/176 (67%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           +  +Y RLL ERI+F+  ++ D +A  +CAQ+L L AE+P K+ISLYINSPGG ++AGMA
Sbjct: 17  TDSVYERLLSERIIFLGSEVNDDVANRLCAQILLLAAEDPTKDISLYINSPGGSISAGMA 76

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYDTM      I+T+ MG AASMG  LL+AG KG R+ALP+ARIL+HQP GG +G A+DI
Sbjct: 77  IYDTMTLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADI 136

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
              A+    IK+ +  +  +  G+  E +E   DRD   +A EA ++G VD ++  
Sbjct: 137 AIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAPEALEYGFVDHIITR 192


>gi|296394283|ref|YP_003659167.1| endopeptidase Clp [Segniliparus rotundus DSM 44985]
 gi|296181430|gb|ADG98336.1| Endopeptidase Clp [Segniliparus rotundus DSM 44985]
          Length = 200

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 85/192 (44%), Positives = 129/192 (67%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P +  + +    +  ++ RLL+ERI+F+  +++D +A  +CAQ+L L AE+P K+ISLYI
Sbjct: 6   PSMRSELSGLNLTDSVFERLLRERIIFLGSEVDDDIANRLCAQVLLLTAEDPSKDISLYI 65

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG ++AGMAIYDTMQ  +  I+T+ MG AASMG  LL+AG KG R+ALP+ARI++HQ
Sbjct: 66  NSPGGSISAGMAIYDTMQLSECDIATYAMGMAASMGQFLLAAGAKGKRYALPHARIMMHQ 125

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           PS G  G A+DI   A+ +   K+ +  +  +  G+T E++ +  +RD   +A+EA ++G
Sbjct: 126 PSAGIYGAAADIAIQAEQLAATKKEMTRLNAEFTGQTVEKIHEDSERDRWFTAAEAKEYG 185

Query: 200 VVDKVLMSRIDI 211
            VD V+     I
Sbjct: 186 FVDHVITRAAKI 197


>gi|256824761|ref|YP_003148721.1| ATP-dependent Clp protease proteolytic subunit ClpP [Kytococcus
           sedentarius DSM 20547]
 gi|256688154|gb|ACV05956.1| ATP-dependent Clp protease proteolytic subunit ClpP [Kytococcus
           sedentarius DSM 20547]
          Length = 240

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 94/193 (48%), Positives = 138/193 (71%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++RI+F   QI+D  A  I AQLL LE+++P +++ +
Sbjct: 43  VLPQFEERTAYGTKRQDPYTKLFEDRIIFCGVQIDDASADDIIAQLLVLESQDPDRDVLM 102

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQFI+P + TF +GQAAS G++LL+AG  G RFALPN+RIL+
Sbjct: 103 YINSPGGSFTAMTAIYDTMQFIRPDVQTFVLGQAASAGAVLLAAGAPGKRFALPNSRILI 162

Query: 138 HQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+     G ASD+E  A ++++++  L E + K+ G+T E+V K ++RD I+SA+EA 
Sbjct: 163 HQPAMEGMGGMASDLEITANEVLRMRTWLEETWAKHSGQTPEKVRKDIERDKILSAAEAQ 222

Query: 197 DWGVVDKVLMSRI 209
           ++G+VD VL SR 
Sbjct: 223 EYGLVDAVLPSRK 235


>gi|302753844|ref|XP_002960346.1| hypothetical protein SELMODRAFT_71251 [Selaginella moellendorffii]
 gi|302767898|ref|XP_002967369.1| hypothetical protein SELMODRAFT_71370 [Selaginella moellendorffii]
 gi|300165360|gb|EFJ31968.1| hypothetical protein SELMODRAFT_71370 [Selaginella moellendorffii]
 gi|300171285|gb|EFJ37885.1| hypothetical protein SELMODRAFT_71251 [Selaginella moellendorffii]
          Length = 214

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 80/168 (47%), Positives = 120/168 (71%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           LL++RIVF+  Q++D  A LI +QLL L+A++P K+I ++INSPGG V+AGM IYD M+ 
Sbjct: 7   LLQQRIVFLGSQVDDVSADLIISQLLLLDAKDPTKDIKMFINSPGGSVSAGMGIYDAMKL 66

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
            +  +ST C G AASMG+ LL++G KG R+ +PNAR+++HQP GG  G A D+    +++
Sbjct: 67  CRADVSTICFGLAASMGAFLLASGTKGKRYCMPNARVMIHQPLGGAGGVAIDVGIQVREM 126

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           +  K +LN+I  +  GK+ E++E   DRD+ M+A EA D+G+VD V+ 
Sbjct: 127 MYHKAKLNKILSRLTGKSEEQIEADTDRDYFMNAWEAVDYGLVDGVID 174


>gi|261337232|ref|ZP_05965116.1| Clp protease [Bifidobacterium gallicum DSM 20093]
 gi|270277586|gb|EFA23440.1| Clp protease [Bifidobacterium gallicum DSM 20093]
          Length = 234

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 83/193 (43%), Positives = 132/193 (68%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y+RL ++RI+++  Q++D  A  I AQLL LE+ +P +++ +
Sbjct: 42  VLPQFEEKTPYGFKRQDPYTRLFEDRIIWMGVQVDDTSADDIMAQLLVLESLDPSRDVMM 101

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL+AG KG R  LPNAR+L+
Sbjct: 102 YINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLAAGTKGKRLILPNARVLI 161

Query: 138 HQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+     G+A++IE  A+++++++  L     K+ G+  E + K ++ D  ++A EA 
Sbjct: 162 HQPAIDQGFGKATEIEIQAKEMLRMREWLENTLAKHTGQPIERIRKDIEVDTFLTAQEAK 221

Query: 197 DWGVVDKVLMSRI 209
           ++G+VD+VL  R 
Sbjct: 222 EYGIVDEVLEHRA 234


>gi|313900686|ref|ZP_07834179.1| endopeptidase Clp [Clostridium sp. HGF2]
 gi|312954748|gb|EFR36423.1| endopeptidase Clp [Clostridium sp. HGF2]
          Length = 189

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 91/190 (47%), Positives = 132/190 (69%), Gaps = 1/190 (0%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP ++E+    ER YD+YS LLKERI+ +TG+I+D M++ ICAQLL+L + + +  I
Sbjct: 1   MVFVPTIIERNASSERVYDLYSCLLKERIIILTGEIDDAMSSSICAQLLYLSSISSE-PI 59

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG V+AG+AIYD M++I+  +ST CMG  ASM ++LLSAG +G R AL N+ I
Sbjct: 60  QMYINSPGGSVSAGLAIYDIMKYIRCDVSTICMGICASMAAVLLSAGTQGKRSALSNSEI 119

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA D+E  A  I K+K RL  I  +N  ++ E + +  DRD+ M A EA
Sbjct: 120 MIHQPMGGMQGQAKDMEIAALHIQKLKERLYSILSENTRQSNETLRRDCDRDYYMDAKEA 179

Query: 196 CDWGVVDKVL 205
             +G++D ++
Sbjct: 180 LSYGLIDAII 189


>gi|116784526|gb|ABK23378.1| unknown [Picea sitchensis]
          Length = 341

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 76/176 (43%), Positives = 116/176 (65%)

Query: 31  RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGM 90
              D  S LL++RIVF+  Q++D  A  I +QLL L+ E+  K+I L+INSPGG VTAGM
Sbjct: 96  EDLDTTSMLLRQRIVFLGSQVDDVSADFIISQLLLLDLEDSTKDIKLFINSPGGSVTAGM 155

Query: 91  AIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASD 150
            IYD M+  K  +ST C G AASMG+ LL++G +G RF +PNA++++HQP GG  G A +
Sbjct: 156 GIYDAMKLCKADVSTVCFGLAASMGAFLLASGTRGKRFCMPNAKVMIHQPLGGGGGSAIE 215

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           +   A++++  K +L +I  +   K+ E++ K  DRD+ ++  EA ++G+ D V+ 
Sbjct: 216 MALQAKELMYHKIKLTKIMSRLTDKSEEQIAKDTDRDYFLNPWEAVEYGLADAVID 271


>gi|297243349|ref|ZP_06927282.1| predicted ATP-dependent Clp protease proteolytic subunit 1
           [Gardnerella vaginalis AMD]
 gi|296888596|gb|EFH27335.1| predicted ATP-dependent Clp protease proteolytic subunit 1
           [Gardnerella vaginalis AMD]
          Length = 203

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 87/186 (46%), Positives = 132/186 (70%)

Query: 22  VVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS 81
           V+EQ      +  I++RLLK+RI+++  +++D  A +ICAQ+L L AE+P+K+I LYINS
Sbjct: 10  VMEQAEAPTSTDSIFNRLLKDRIIWLGSEVKDENANVICAQMLMLAAEDPKKDIWLYINS 69

Query: 82  PGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
           PGG +TAGMAIYDTMQ I+P ++T  +G AASMG  LLS+G  G R+   +AR+L+HQPS
Sbjct: 70  PGGSITAGMAIYDTMQLIEPDVATIAVGMAASMGQFLLSSGTPGKRYITSHARVLMHQPS 129

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
           GG  G A+D+  +A+ I+ +K+ L+E+  K  G T EE+ +  + DH  +A +A ++G V
Sbjct: 130 GGVGGTATDVRINAELIMDMKKTLSELTAKQTGHTVEEIYRDNEYDHWFTAQQALEYGFV 189

Query: 202 DKVLMS 207
           DK++ +
Sbjct: 190 DKIVTT 195


>gi|158316683|ref|YP_001509191.1| ATP-dependent Clp protease proteolytic subunit [Frankia sp.
           EAN1pec]
 gi|158112088|gb|ABW14285.1| Endopeptidase Clp [Frankia sp. EAN1pec]
          Length = 210

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 93/192 (48%), Positives = 143/192 (74%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P VVE+T RGE S D YS+LL+ERI+F+  QI+D  A  + AQLLFLE E+P ++IS+
Sbjct: 13  VLPNVVERTPRGEYSMDPYSKLLRERIIFLGTQIDDTSANDVMAQLLFLEGEDPDRDISI 72

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDT+ F++P ++T CMGQAAS  ++LL+AG  G R ALPN+RI++
Sbjct: 73  YINSPGGSLTALTAIYDTICFVRPEVATVCMGQAASAAAVLLAAGAPGKRVALPNSRIMI 132

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPS    GQ+SD+E  A+++++++  +  + V++ G+   E+ + ++RD I++A +A  
Sbjct: 133 HQPSAQGEGQSSDLEIQAREVLRLRALMERMLVEHTGRAEHEIRQDVERDTILTAEQARQ 192

Query: 198 WGVVDKVLMSRI 209
           +G+VD+V+ SR 
Sbjct: 193 YGIVDEVVASRK 204


>gi|298252718|ref|ZP_06976512.1| predicted ATP-dependent Clp protease proteolytic subunit 1
           [Gardnerella vaginalis 5-1]
 gi|297533082|gb|EFH71966.1| predicted ATP-dependent Clp protease proteolytic subunit 1
           [Gardnerella vaginalis 5-1]
          Length = 203

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 87/186 (46%), Positives = 132/186 (70%)

Query: 22  VVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS 81
           V+EQ      +  I++RLLK+RI+++  +++D  A +ICAQ+L L AE+P+K+I LYINS
Sbjct: 10  VMEQAEASTSTDSIFNRLLKDRIIWLGSEVKDENANVICAQMLMLAAEDPKKDIWLYINS 69

Query: 82  PGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
           PGG +TAGMAIYDTMQ I+P ++T  +G AASMG  LLS+G  G R+   +AR+L+HQPS
Sbjct: 70  PGGSITAGMAIYDTMQLIEPDVATIAVGMAASMGQFLLSSGTPGKRYITSHARVLMHQPS 129

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
           GG  G A+D+  +A+ I+ +K+ L+E+  K  G T EE+ +  + DH  +A +A ++G V
Sbjct: 130 GGVGGTATDVRINAELIMDMKKTLSELTAKQTGHTVEEIYRDNEYDHWFTAQQALEYGFV 189

Query: 202 DKVLMS 207
           DK++ +
Sbjct: 190 DKIVTT 195


>gi|329934561|ref|ZP_08284602.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           griseoaurantiacus M045]
 gi|329305383|gb|EGG49239.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           griseoaurantiacus M045]
          Length = 235

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 89/193 (46%), Positives = 137/193 (70%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T++G R YD Y++L +ER++F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 36  VIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISV 95

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQF+KP I T CMGQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 96  YINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNARVLI 155

Query: 138 HQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP      GQ SD+E  A +I++++ +L ++  K+     E++ + ++RD I++A EA 
Sbjct: 156 HQPYSETGRGQVSDLEIAANEILRMRAQLEDLLAKHSTTPIEKIREDIERDKILTAEEAL 215

Query: 197 DWGVVDKVLMSRI 209
            +G++D+++ +R 
Sbjct: 216 SYGLIDQIISTRK 228


>gi|63079329|gb|AAY29672.1| predicted ATP-dependent Clp protease proteolytic subunit 2
           [Bifidobacterium breve UCC2003]
          Length = 227

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 84/192 (43%), Positives = 136/192 (70%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T  G ++ D YSRL ++RI+F+  Q++D  A  + AQLL LE+++P +++ +
Sbjct: 35  IMPQFVEKTPYGMKTQDAYSRLFEDRIIFLGVQVDDASADDVMAQLLVLESQDPNRDVMM 94

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL++G KG R  LPNAR+L+
Sbjct: 95  YINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLASGTKGKRLMLPNARVLI 154

Query: 138 HQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+     G+A++IE  A+++++++  L E    + G+  E++ + ++ D  ++A EA 
Sbjct: 155 HQPAIDQGFGKATEIEIQAKEMLRMREWLEETLANHTGQDVEKIRRDIEVDTFLTADEAK 214

Query: 197 DWGVVDKVLMSR 208
           D+G+VD+VL  R
Sbjct: 215 DYGIVDEVLAHR 226


>gi|322690866|ref|YP_004220436.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           longum subsp. longum JCM 1217]
 gi|320455722|dbj|BAJ66344.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           longum subsp. longum JCM 1217]
          Length = 233

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 84/209 (40%), Positives = 141/209 (67%), Gaps = 3/209 (1%)

Query: 3   FEGCAKKDSEDVFLG--LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           F   + + ++       ++P  VE+T  G ++ D YSRL ++RI+F+  Q++D  A  + 
Sbjct: 24  FMPASARAAQPAPTNRYIMPQFVEKTPYGMKTQDAYSRLFEDRIIFLGVQVDDASADDVM 83

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLL LE+++P +++ +YINSPGG + A  AIYDTMQ+IKP + T C+GQAAS  ++LL+
Sbjct: 84  AQLLVLESQDPNRDVMMYINSPGGSMMAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLA 143

Query: 121 AGEKGMRFALPNARILLHQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
           +G KG R  LPNAR+L+HQP+     G+A++IE  A+++++++  L E   K+ G+  E+
Sbjct: 144 SGTKGKRLMLPNARVLIHQPAIDQGFGKATEIEIQAKEMLRMREWLEETLAKHTGQDVEK 203

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           + + ++ D  ++A EA ++G+VD+VL  R
Sbjct: 204 IRRDIEVDTFLTAPEAKEYGIVDEVLEHR 232


>gi|300780630|ref|ZP_07090485.1| endopeptidase Clp [Corynebacterium genitalium ATCC 33030]
 gi|300533616|gb|EFK54676.1| endopeptidase Clp [Corynebacterium genitalium ATCC 33030]
          Length = 206

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 89/210 (42%), Positives = 142/210 (67%), Gaps = 8/210 (3%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MSF+    +        ++P  +EQ++ G +  + YS+L +ERI+F+  Q++D  A  I 
Sbjct: 1   MSFQMPNSRY-------VLPSFIEQSSYGTKETNPYSKLFEERIIFLGTQVDDTSANDIM 53

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLL LE+++P ++I++YINSPGG  T+ MAIYDTMQ+++P + T C+GQAAS  +++L+
Sbjct: 54  AQLLVLESQDPDRDITMYINSPGGSFTSLMAIYDTMQYVRPDVQTVCLGQAASAAAVILA 113

Query: 121 AGEKGMRFALPNARILLHQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
           AG  G R ALPN+R+L+HQP+     GQ SD+E  AQ+I +++R + E   ++ G+T E+
Sbjct: 114 AGAPGKRAALPNSRVLIHQPATQGTQGQVSDLEIQAQEIERMRRLMEETLARHSGRTAEQ 173

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           V    DRD I++A EA ++G++D+V   R 
Sbjct: 174 VRIDTDRDKILTAEEAVEYGIIDQVFDYRK 203


>gi|309777267|ref|ZP_07672229.1| Clp protease [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914947|gb|EFP60725.1| Clp protease [Erysipelotrichaceae bacterium 3_1_53]
          Length = 189

 Score =  223 bits (568), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 92/190 (48%), Positives = 130/190 (68%), Gaps = 1/190 (0%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  VP ++E+    ER YD+YS LLKERI+ +TG+I+D M++ ICAQLL+L +    + I
Sbjct: 1   MVFVPTIIERNASSERVYDLYSCLLKERIIILTGEIDDAMSSSICAQLLYLSS-MNNEPI 59

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG V+AG+AIYD M++I+  +ST CMG  ASM ++LLSAG +G R AL N+ I
Sbjct: 60  QMYINSPGGSVSAGLAIYDIMKYIRCDVSTICMGICASMAAVLLSAGTRGKRSALSNSEI 119

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA D+E  A  I K+K RL  I  +N  +  E + +  DRD  M ASEA
Sbjct: 120 MIHQPMGGMQGQAKDMEIAALHIQKLKERLYSILSENTHQNIETLRQDCDRDCYMDASEA 179

Query: 196 CDWGVVDKVL 205
             +G++D ++
Sbjct: 180 LAYGLIDTII 189


>gi|194476660|ref|YP_002048839.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paulinella
           chromatophora]
 gi|171191667|gb|ACB42629.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paulinella
           chromatophora]
          Length = 193

 Score =  223 bits (568), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 86/193 (44%), Positives = 120/193 (62%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++ +  E   +  +  +  +RL+ ERI+F+   +   +   I  QLL LEA++ +K+I L
Sbjct: 1   MILLTAEDMTQNAQRLNFTARLMDERIIFLGEAVTAEVTNRIVTQLLLLEADDSEKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+ I DTMQ IKP + T C+G AASMG+ LL+AG KG R +L N+RI++
Sbjct: 61  YINSPGGSVYDGLGILDTMQHIKPDVYTVCVGLAASMGAFLLAAGTKGKRCSLFNSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  GQASD+   A +I  +K RLN       GK+  +VE   DRD  MSA  A  
Sbjct: 121 HQPSGGIRGQASDMRIQANEITYLKHRLNLELSNFTGKSLHQVEGDTDRDFFMSAYSAKA 180

Query: 198 WGVVDKVLMSRID 210
           +G++DKV+  R  
Sbjct: 181 YGLIDKVVSRRPK 193


>gi|72162592|ref|YP_290249.1| ATP-dependent Clp protease proteolytic subunit [Thermobifida fusca
           YX]
 gi|124013819|sp|Q47MU3|CLPP1_THEFY RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|71916324|gb|AAZ56226.1| ATP-dependent Clp protease proteolytic subunit ClpP / ClpP2
           peptidase. Serine peptidase. MEROPS family S14
           [Thermobifida fusca YX]
          Length = 222

 Score =  223 bits (568), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 91/193 (47%), Positives = 136/193 (70%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +E+T  G +  + Y++L +ERI+FV  QI+D  A  I AQ++ LE  +  ++I+L
Sbjct: 26  VLPSYIERTAYGVKEMNPYNKLFEERIIFVGVQIDDTSANDIIAQMMTLEHIDSDRDITL 85

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQF++P I T C+GQAAS  ++LL+ G KG R ALPN+RIL+
Sbjct: 86  YINSPGGSFTSLMAIYDTMQFVRPDIQTVCVGQAASAAAVLLAGGTKGKRTALPNSRILI 145

Query: 138 HQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+     GQASD+E  A +I++I+ +L  I  K+ G++ EE+ + ++RD I++A EA 
Sbjct: 146 HQPATEGTHGQASDVEIMANEIMRIRHQLETILAKHTGRSVEEISRDIERDKILTAEEAK 205

Query: 197 DWGVVDKVLMSRI 209
           ++G+VD VL  R 
Sbjct: 206 EYGIVDDVLPYRK 218


>gi|317124504|ref|YP_004098616.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Intrasporangium calvum DSM 43043]
 gi|315588592|gb|ADU47889.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Intrasporangium calvum DSM 43043]
          Length = 217

 Score =  223 bits (568), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 93/194 (47%), Positives = 137/194 (70%), Gaps = 2/194 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T+ G +  D Y++L ++RI+F+  Q++D  A  I AQLL LE+ +P ++I +
Sbjct: 19  ILPQFEERTSYGMKRSDPYNKLFEDRIIFLGVQVDDASADDIIAQLLVLESLDPDRDILM 78

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQF++P I TF +GQAAS  ++LL AG  G RFALPNARIL+
Sbjct: 79  YINSPGGSFTAMTAIYDTMQFVRPDIQTFVIGQAASAAAVLLGAGAPGKRFALPNARILI 138

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASDIE  A ++++++  L +    + G+T E+V   ++RD I+S+ +A
Sbjct: 139 HQPALSGGDYGQASDIEIQANEVLRMRTWLEDTLAHHTGRTSEQVRNDIERDKILSSDDA 198

Query: 196 CDWGVVDKVLMSRI 209
            ++G++D+VL SR 
Sbjct: 199 KEYGLIDEVLASRK 212


>gi|311896031|dbj|BAJ28439.1| putative ATP-dependent Clp protease proteolytic subunit
           [Kitasatospora setae KM-6054]
          Length = 220

 Score =  223 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 90/194 (46%), Positives = 140/194 (72%), Gaps = 1/194 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP  VE+T++G R YD Y++L +ERI+F+  Q++D  A  I AQL+ LE+ +P ++ISL
Sbjct: 23  IVPRFVERTSQGIREYDPYAKLFEERIIFLGSQVDDVSANDIMAQLICLESMDPDRDISL 82

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQF+KP I T CMGQAAS  +++L+AG  G R ALPNAR+L+
Sbjct: 83  YINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVILAAGTPGKRLALPNARVLI 142

Query: 138 HQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP      GQ SD+E  A++I +++ +L  +  K+  +T ++V + ++RD I++A E+ 
Sbjct: 143 HQPYTETGRGQVSDLEIQAKEIFRMREQLETMLAKHSSQTVDKVREDIERDKILTAEESL 202

Query: 197 DWGVVDKVLMSRID 210
           ++G++D+++ +R +
Sbjct: 203 EYGLIDQIVSTRKN 216


>gi|258655306|ref|YP_003204462.1| endopeptidase Clp [Nakamurella multipartita DSM 44233]
 gi|258558531|gb|ACV81473.1| Endopeptidase Clp [Nakamurella multipartita DSM 44233]
          Length = 203

 Score =  223 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 83/191 (43%), Positives = 135/191 (70%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP V+E+T  GER  D++SRLL +RI+++  +I+D +A +I AQLL LE++NP  EI LY
Sbjct: 6   VPTVIERTPAGERVVDVFSRLLSDRIIYLGTEIDDDVANVIVAQLLHLESDNPDAEIGLY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG ++A  A+YDTMQF++ P++T C+GQAAS  ++LL+AG  G R  LP+ R+LLH
Sbjct: 66  INSPGGSMSAMTAVYDTMQFVRAPVATTCVGQAASAAAILLAAGAPGRRAVLPHTRVLLH 125

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPS G  GQ SD+   A+++++++ ++ ++  ++ G+    + +  DRD + +A +A  +
Sbjct: 126 QPSTGGEGQISDLTLQARELLRVREQMEQVLARHTGQDVATLRRDTDRDKVFTAEQAVAY 185

Query: 199 GVVDKVLMSRI 209
           G+ D ++ +R 
Sbjct: 186 GLADLIVSARP 196


>gi|88192658|pdb|2CBY|A Chain A, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 gi|88192659|pdb|2CBY|B Chain B, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 gi|88192660|pdb|2CBY|C Chain C, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 gi|88192661|pdb|2CBY|D Chain D, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 gi|88192662|pdb|2CBY|E Chain E, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 gi|88192663|pdb|2CBY|F Chain F, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 gi|88192664|pdb|2CBY|G Chain G, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
          Length = 208

 Score =  223 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 84/176 (47%), Positives = 118/176 (67%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           +  +Y RLL ERI+F+  ++ D +A  +CAQ+L L AE+  K+ISLYINSPGG ++AGMA
Sbjct: 17  TDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMA 76

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYDTM      I+T+ MG AASMG  LL+AG KG R+ALP+ARIL+HQP GG +G A+DI
Sbjct: 77  IYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADI 136

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
              A+    IK+ +  +  +  G+  E +E   DRD   +A+EA ++G VD ++  
Sbjct: 137 AIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITR 192


>gi|15841985|ref|NP_337022.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis CDC1551]
 gi|31793642|ref|NP_856135.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium bovis
           AF2122/97]
 gi|57116992|ref|YP_177883.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis H37Rv]
 gi|121638344|ref|YP_978568.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|148662296|ref|YP_001283819.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis H37Ra]
 gi|148823661|ref|YP_001288415.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis F11]
 gi|167969785|ref|ZP_02552062.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis H37Ra]
 gi|215404397|ref|ZP_03416578.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis 02_1987]
 gi|215412218|ref|ZP_03420980.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis 94_M4241A]
 gi|215427844|ref|ZP_03425763.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis T92]
 gi|215431407|ref|ZP_03429326.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis EAS054]
 gi|215446707|ref|ZP_03433459.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis T85]
 gi|218754193|ref|ZP_03532989.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis GM 1503]
 gi|219558458|ref|ZP_03537534.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis T17]
 gi|224990838|ref|YP_002645525.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|253798460|ref|YP_003031461.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis KZN 1435]
 gi|254232595|ref|ZP_04925922.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           (endopeptidase clp) [Mycobacterium tuberculosis C]
 gi|254365237|ref|ZP_04981283.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           (endopeptidase clp) [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254551509|ref|ZP_05141956.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260201586|ref|ZP_05769077.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis T46]
 gi|260205765|ref|ZP_05773256.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis K85]
 gi|289443987|ref|ZP_06433731.1| clp protease [Mycobacterium tuberculosis T46]
 gi|289553748|ref|ZP_06442958.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis KZN 605]
 gi|289570616|ref|ZP_06450843.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis T17]
 gi|289575155|ref|ZP_06455382.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis K85]
 gi|289746243|ref|ZP_06505621.1| ATP-dependent Clp protease proteolytic subunit 1 [Mycobacterium
           tuberculosis 02_1987]
 gi|289751067|ref|ZP_06510445.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis T92]
 gi|289754569|ref|ZP_06513947.1| Endopeptidase Clp 1 [Mycobacterium tuberculosis EAS054]
 gi|289758593|ref|ZP_06517971.1| endopeptidase Clp 1 [Mycobacterium tuberculosis T85]
 gi|289762630|ref|ZP_06522008.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           (endopeptidase clp) [Mycobacterium tuberculosis GM 1503]
 gi|294994431|ref|ZP_06800122.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis 210]
 gi|297635067|ref|ZP_06952847.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis KZN 4207]
 gi|297732058|ref|ZP_06961176.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis KZN R506]
 gi|298525939|ref|ZP_07013348.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306776731|ref|ZP_07415068.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis SUMu001]
 gi|306780504|ref|ZP_07418841.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis SUMu002]
 gi|306785256|ref|ZP_07423578.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis SUMu003]
 gi|306789615|ref|ZP_07427937.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis SUMu004]
 gi|306793942|ref|ZP_07432244.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis SUMu005]
 gi|306798336|ref|ZP_07436638.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis SUMu006]
 gi|306804212|ref|ZP_07440880.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis SUMu008]
 gi|306808782|ref|ZP_07445450.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis SUMu007]
 gi|306968614|ref|ZP_07481275.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis SUMu009]
 gi|306972841|ref|ZP_07485502.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis SUMu010]
 gi|307080547|ref|ZP_07489717.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis SUMu011]
 gi|313659394|ref|ZP_07816274.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis KZN V2475]
 gi|61221190|sp|P0A526|CLPP1_MYCTU RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|61221191|sp|P0A527|CLPP1_MYCBO RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|90109123|pdb|2CE3|A Chain A, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 gi|90109124|pdb|2CE3|B Chain B, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 gi|90109125|pdb|2CE3|C Chain C, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 gi|90109126|pdb|2CE3|D Chain D, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 gi|90109127|pdb|2CE3|E Chain E, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 gi|90109128|pdb|2CE3|F Chain F, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 gi|90109129|pdb|2CE3|G Chain G, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 gi|90109130|pdb|2CE3|H Chain H, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 gi|90109131|pdb|2CE3|I Chain I, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 gi|90109132|pdb|2CE3|J Chain J, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 gi|90109133|pdb|2CE3|K Chain K, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 gi|90109134|pdb|2CE3|L Chain L, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 gi|90109135|pdb|2CE3|M Chain M, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 gi|90109136|pdb|2CE3|N Chain N, Crystal Structure Of The Atp-Dependent Clp Protease
           Proteolytic Subunit 1 (Clpp1) From Mycobacterium
           Tuberculosis
 gi|13882259|gb|AAK46836.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mycobacterium
           tuberculosis CDC1551]
 gi|31619235|emb|CAD97349.1| PROBABLE ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 1 CLPP1
           (ENDOPEPTIDASE CLP) [Mycobacterium bovis AF2122/97]
 gi|41353706|emb|CAE55492.1| PROBABLE ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 1 CLPP1
           (ENDOPEPTIDASE CLP) [Mycobacterium tuberculosis H37Rv]
 gi|121493992|emb|CAL72469.1| Probable atp-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|124601654|gb|EAY60664.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           (endopeptidase clp) [Mycobacterium tuberculosis C]
 gi|134150751|gb|EBA42796.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           (endopeptidase clp) [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148506448|gb|ABQ74257.1| ATP-dependent Clp protease proteolytic subunit ClpP1 [Mycobacterium
           tuberculosis H37Ra]
 gi|148722188|gb|ABR06813.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis F11]
 gi|224773951|dbj|BAH26757.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|253319963|gb|ACT24566.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis KZN 1435]
 gi|289416906|gb|EFD14146.1| clp protease [Mycobacterium tuberculosis T46]
 gi|289438380|gb|EFD20873.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis KZN 605]
 gi|289539586|gb|EFD44164.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis K85]
 gi|289544370|gb|EFD48018.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis T17]
 gi|289686771|gb|EFD54259.1| ATP-dependent Clp protease proteolytic subunit 1 [Mycobacterium
           tuberculosis 02_1987]
 gi|289691654|gb|EFD59083.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis T92]
 gi|289695156|gb|EFD62585.1| Endopeptidase Clp 1 [Mycobacterium tuberculosis EAS054]
 gi|289710136|gb|EFD74152.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           (endopeptidase clp) [Mycobacterium tuberculosis GM 1503]
 gi|289714157|gb|EFD78169.1| endopeptidase Clp 1 [Mycobacterium tuberculosis T85]
 gi|298495733|gb|EFI31027.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308214891|gb|EFO74290.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis SUMu001]
 gi|308326652|gb|EFP15503.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis SUMu002]
 gi|308330078|gb|EFP18929.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis SUMu003]
 gi|308333918|gb|EFP22769.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis SUMu004]
 gi|308337721|gb|EFP26572.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis SUMu005]
 gi|308341402|gb|EFP30253.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis SUMu006]
 gi|308344888|gb|EFP33739.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis SUMu007]
 gi|308349199|gb|EFP38050.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis SUMu008]
 gi|308353820|gb|EFP42671.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis SUMu009]
 gi|308357769|gb|EFP46620.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis SUMu010]
 gi|308361714|gb|EFP50565.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis SUMu011]
 gi|323718967|gb|EGB28117.1| ATP-dependent Clp protease proteolytic subunit 1 ClpP1
           [Mycobacterium tuberculosis CDC1551A]
 gi|326904075|gb|EGE51008.1| ATP-dependent Clp protease proteolytic subunit 1 ClpP1
           [Mycobacterium tuberculosis W-148]
 gi|328458228|gb|AEB03651.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis KZN 4207]
          Length = 200

 Score =  223 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 84/176 (47%), Positives = 118/176 (67%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           +  +Y RLL ERI+F+  ++ D +A  +CAQ+L L AE+  K+ISLYINSPGG ++AGMA
Sbjct: 17  TDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMA 76

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYDTM      I+T+ MG AASMG  LL+AG KG R+ALP+ARIL+HQP GG +G A+DI
Sbjct: 77  IYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADI 136

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
              A+    IK+ +  +  +  G+  E +E   DRD   +A+EA ++G VD ++  
Sbjct: 137 AIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITR 192


>gi|326330782|ref|ZP_08197083.1| Clp protease [Nocardioidaceae bacterium Broad-1]
 gi|325951312|gb|EGD43351.1| Clp protease [Nocardioidaceae bacterium Broad-1]
          Length = 201

 Score =  223 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 89/190 (46%), Positives = 132/190 (69%), Gaps = 1/190 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P   E+T+ G R  D Y++L ++RI+++   I D +A  + AQLL L++ NP ++IS+Y
Sbjct: 5   IPQWEERTSYGVRRIDPYAKLFEDRIIYLGTPISDDVANAVIAQLLCLQSMNPDQDISIY 64

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TA  AIYDTMQFIKP + T C+GQAAS  ++LL AG KG R ALPN+RIL+H
Sbjct: 65  INSPGGSFTACTAIYDTMQFIKPDVQTVCIGQAASAAAILLGAGAKGKRMALPNSRILIH 124

Query: 139 QPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP      GQ SDIE  A +I++++  L ++   + GK+ +EV   ++RD I++A++A +
Sbjct: 125 QPYTEGTFGQTSDIEIQANEILRMRELLEKMIADHSGKSMDEVSHDIERDKILTAAQAVE 184

Query: 198 WGVVDKVLMS 207
           +G++D VL S
Sbjct: 185 YGLIDSVLES 194


>gi|118618992|ref|YP_907324.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           ulcerans Agy99]
 gi|183983782|ref|YP_001852073.1| ATP-dependent Clp protease proteolytic subunit ClpP1 [Mycobacterium
           marinum M]
 gi|118571102|gb|ABL05853.1| ATP-dependent CLP protease proteolytic subunit 1 ClpP1
           [Mycobacterium ulcerans Agy99]
 gi|183177108|gb|ACC42218.1| ATP-dependent CLP protease proteolytic subunit 1 ClpP1
           [Mycobacterium marinum M]
          Length = 198

 Score =  223 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 83/185 (44%), Positives = 122/185 (65%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           +  +Y RLL ERI+F+  ++ D +A  +CAQ+L L AE+  K+I+LYINSPGG ++AGMA
Sbjct: 14  TDSVYERLLSERIIFLGSEVNDEVANRLCAQILLLAAEDASKDINLYINSPGGSISAGMA 73

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYDTM      I+T+ MG AASMG  LL+AG KG R+ALP+ARIL+HQP GG +G A+DI
Sbjct: 74  IYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADI 133

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
              A+    IK+ +  +  +  G++ E +E   DRD   +A EA ++G VD ++     +
Sbjct: 134 AIQAEQFAVIKKEMFRLNAEFTGQSIERIEADSDRDRWFTAPEALEYGFVDHIITRAAHV 193

Query: 212 EEKSK 216
             +++
Sbjct: 194 NGEAQ 198


>gi|183601399|ref|ZP_02962769.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219683456|ref|YP_002469839.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|241191101|ref|YP_002968495.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|241196507|ref|YP_002970062.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|63055004|gb|AAY29040.1| predicted ATP-dependent Clp protease proteolytic subunit 2
           [Bifidobacterium animalis subsp. animalis ATCC 25527]
 gi|183219005|gb|EDT89646.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219621106|gb|ACL29263.1| predicted ATP-dependent Clp protease proteolytic subunit 2
           [Bifidobacterium animalis subsp. lactis AD011]
 gi|240249493|gb|ACS46433.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240251061|gb|ACS48000.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|289178845|gb|ADC86091.1| ClpP [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295794090|gb|ADG33625.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 233

 Score =  223 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 84/192 (43%), Positives = 134/192 (69%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP   E+T  G ++ + Y+RL  +RI+F+  Q++D  A  I AQLL LE+ +P +++ +
Sbjct: 41  VVPEFTERTPYGMKTQNPYTRLFDDRIIFLGVQVDDTSADDIMAQLLVLESMDPNRDVMM 100

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  +++L+AG KG R  LPNAR+L+
Sbjct: 101 YINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAIILAAGTKGKRLMLPNARVLI 160

Query: 138 HQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+     G+A+DIE  A+++++++  L     K+ G++ E + + ++ D  ++ASEA 
Sbjct: 161 HQPAIDQGFGKATDIEIQAKEMMRMREWLENTLAKHTGQSRERISRDIEVDTFLTASEAK 220

Query: 197 DWGVVDKVLMSR 208
           ++G+VD+VL  R
Sbjct: 221 EYGIVDEVLEHR 232


>gi|296394282|ref|YP_003659166.1| endopeptidase Clp [Segniliparus rotundus DSM 44985]
 gi|296181429|gb|ADG98335.1| Endopeptidase Clp [Segniliparus rotundus DSM 44985]
          Length = 210

 Score =  223 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 92/200 (46%), Positives = 135/200 (67%), Gaps = 3/200 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP  +E T+ G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE+ +P ++I++
Sbjct: 11  IVPSFIEHTSTGVKETNPYTKLFEERIIFLGTQVDDTSANDIMAQLLVLESLDPDRDITI 70

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQF+   I+T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 71  YINSPGGSFTSLMAIYDTMQFVHCDIATVCLGQAASAAAVLLAAGTPGKRAALPNARVLI 130

Query: 138 HQPS---GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           HQP    G   GQA+D+E  A +I +++R + E   ++ GKT +EV K  DRD I++A E
Sbjct: 131 HQPRIEGGAIRGQATDLEIQAAEIERMRRLMEETLSRHTGKTADEVRKDTDRDKILTAQE 190

Query: 195 ACDWGVVDKVLMSRIDIEEK 214
           A D+G++D V   R    + 
Sbjct: 191 AKDYGIIDSVYPYRKKSAKN 210


>gi|283783341|ref|YP_003374095.1| Clp protease [Gardnerella vaginalis 409-05]
 gi|283441958|gb|ADB14424.1| Clp protease [Gardnerella vaginalis 409-05]
          Length = 203

 Score =  223 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 87/186 (46%), Positives = 132/186 (70%)

Query: 22  VVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS 81
           V+EQ      +  I++RLLK+RI+++  +++D  A +ICAQ+L L AE+P+K+I LYINS
Sbjct: 10  VMEQAEAPTSTDPIFNRLLKDRIIWLGSEVKDENANVICAQMLMLAAEDPKKDIWLYINS 69

Query: 82  PGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
           PGG +TAGMAIYDTMQ I+P ++T  +G AASMG  LLS+G  G R+   +AR+L+HQPS
Sbjct: 70  PGGSITAGMAIYDTMQLIEPDVATIAVGMAASMGQFLLSSGTPGKRYITSHARVLMHQPS 129

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
           GG  G A+D+  +A+ I+ +K+ L+E+  K  G T EE+ +  + DH  +A +A ++G V
Sbjct: 130 GGVGGTATDVRINAELIMDMKKTLSELTAKQTGHTVEEIYRDNEYDHWFTAQQALEYGFV 189

Query: 202 DKVLMS 207
           DK++ +
Sbjct: 190 DKIVTT 195


>gi|161784217|ref|YP_001595533.1| ATP-dependent protease proteolytic subunit [Lemna minor]
 gi|88696795|gb|ABD48520.1| ATP-dependent protease proteolytic subunit [Lemna minor]
          Length = 202

 Score =  223 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 73/189 (38%), Positives = 119/189 (62%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     D+Y+RL +ER++F+  +++  ++  +   +++L  E+  K++ 
Sbjct: 5   VPKVPFRSPGEEDAVWVDVYNRLYRERLLFLGQEVDSEISNQLVGLMVYLSIEDDTKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYDTMQF+ P + T CMG AASMGS +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGIAIYDTMQFVPPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  QA +    A++++K++  L  +YV+  G     V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQAGEFILEAEELLKLRETLTRVYVQRTGNPLWVVSEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
             +G++D V
Sbjct: 185 QAYGLIDLV 193


>gi|283455719|ref|YP_003360283.1| ATP-dependent Clp protease proteolytic subunit 2 [Bifidobacterium
           dentium Bd1]
 gi|283102353|gb|ADB09459.1| clpP2 ATP-dependent Clp protease proteolytic subunit 2
           [Bifidobacterium dentium Bd1]
          Length = 233

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 85/199 (42%), Positives = 138/199 (69%), Gaps = 3/199 (1%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
            +D +  ++P   E+T  G +  D Y+RL ++RI+F+  Q++D  A  I AQLL LE+++
Sbjct: 36  PQDRY--VLPQFEEKTPYGFKRQDPYTRLFEDRIIFMGVQVDDTSADDIMAQLLVLESQD 93

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
           P +++ +YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL+AG KG R  L
Sbjct: 94  PNRDVMMYINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLAAGTKGKRLML 153

Query: 131 PNARILLHQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           PNAR+L+HQP+     G+A++IE  A+++++++  L +   K+ G+  E++ K ++ D  
Sbjct: 154 PNARVLIHQPAIDQGFGKATEIEIQAKEMLRMREWLEDTLAKHTGQDVEKIRKDIEVDTF 213

Query: 190 MSASEACDWGVVDKVLMSR 208
           ++A+EA  +G+VD+VL  R
Sbjct: 214 LTAAEAKAYGIVDEVLEHR 232


>gi|227497467|ref|ZP_03927696.1| endopeptidase Clp [Actinomyces urogenitalis DSM 15434]
 gi|226833041|gb|EEH65424.1| endopeptidase Clp [Actinomyces urogenitalis DSM 15434]
          Length = 221

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 92/193 (47%), Positives = 133/193 (68%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D YS+L ++RIVF+  Q++D  A  + AQLL LE+++P   I++
Sbjct: 21  VMPQFEERTAYGFKRQDAYSKLFEDRIVFLGVQVDDASADDVMAQLLVLESQDPDGLITM 80

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+IKP I T C+GQAAS  ++LL+AG +G R ALPNARIL+
Sbjct: 81  YINSPGGSFTALTAIYDTMQYIKPQIQTVCLGQAASAAAVLLAAGSEGKRLALPNARILI 140

Query: 138 HQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+     GQASDIE  A ++ +++  L E    + G++ ++V   L+RD I++A  A 
Sbjct: 141 HQPAMEGMQGQASDIEIVANELDRMRTWLEETLAAHTGQSVDKVHADLERDKILTAQAAL 200

Query: 197 DWGVVDKVLMSRI 209
           ++G+VD+VL SR 
Sbjct: 201 EYGLVDQVLSSRK 213


>gi|309801928|ref|ZP_07696043.1| endopeptidase Clp [Bifidobacterium dentium JCVIHMP022]
 gi|308221484|gb|EFO77781.1| endopeptidase Clp [Bifidobacterium dentium JCVIHMP022]
          Length = 233

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 85/199 (42%), Positives = 138/199 (69%), Gaps = 3/199 (1%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
            +D +  ++P   E+T  G +  D Y+RL ++RI+F+  Q++D  A  I AQLL LE+++
Sbjct: 36  PQDRY--VLPQFEEKTPYGFKRQDPYTRLFEDRIIFMGVQVDDTSADDIMAQLLVLESQD 93

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
           P +++ +YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL+AG KG R  L
Sbjct: 94  PNRDVMMYINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLAAGTKGKRLML 153

Query: 131 PNARILLHQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           PNAR+L+HQP+     G+A++IE  A+++++++  L +   K+ G+  E++ K ++ D  
Sbjct: 154 PNARVLIHQPAIDQGFGKATEIEIQAKEMLRMREWLEDTLAKHTGQDVEKIRKDIEVDTF 213

Query: 190 MSASEACDWGVVDKVLMSR 208
           ++A+EA  +G+VD+VL  R
Sbjct: 214 LTAAEAKAYGIVDEVLEHR 232


>gi|302528951|ref|ZP_07281293.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sp. AA4]
 gi|302437846|gb|EFL09662.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sp. AA4]
          Length = 217

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 89/193 (46%), Positives = 136/193 (70%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T+ G +  + Y++L +ER +F+  Q++D  A  + AQLL LE E+P ++IS+
Sbjct: 21  ILPSYVERTSYGVKESNPYNKLYEERTIFLGVQVDDASANDVMAQLLHLEHEDPDRDISI 80

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+I+P IST C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 81  YINSPGGSFTSLMAIYDTMQYIRPDISTVCLGQAASAAAVLLAAGTPGKRMALPNARVLI 140

Query: 138 HQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+     GQ SD+E  A +I +++R++  I  K+  K  +E++  ++RD I++A EA 
Sbjct: 141 HQPATEGTYGQVSDLEIQANEIQRVRRQMEVILAKHTNKEPDEIKADIERDKILTAEEAK 200

Query: 197 DWGVVDKVLMSRI 209
            +G++D+VL  R 
Sbjct: 201 AYGLIDEVLPYRK 213


>gi|21221075|ref|NP_626854.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           coelicolor A3(2)]
 gi|256787754|ref|ZP_05526185.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           lividans TK24]
 gi|3834446|gb|AAC70948.1| ATP-dependent Clp protease proteolytic subunit 2 [Streptomyces
           coelicolor A3(2)]
 gi|10280518|emb|CAC09994.1| ATP dependent Clp protease proteolytic subunit 2 [Streptomyces
           coelicolor A3(2)]
          Length = 236

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 87/193 (45%), Positives = 137/193 (70%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T++G R YD Y++L +ER++F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 37  VIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISV 96

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ++KP + T CMGQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 97  YINSPGGSFTALTAIYDTMQYVKPDVQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLI 156

Query: 138 HQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP      GQ SD+E  A +I++++ +L E+  K+     E++ + ++RD I++A +A 
Sbjct: 157 HQPYSETGRGQVSDLEIAANEILRMRSQLEEMLAKHSTTPVEKIREDIERDKILTAEDAL 216

Query: 197 DWGVVDKVLMSRI 209
            +G++D+++ +R 
Sbjct: 217 SYGLIDQIITTRK 229


>gi|302560651|ref|ZP_07312993.1| Clp protease [Streptomyces griseoflavus Tu4000]
 gi|302478269|gb|EFL41362.1| Clp protease [Streptomyces griseoflavus Tu4000]
          Length = 226

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 87/193 (45%), Positives = 139/193 (72%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T++G R YD Y++L +ER++F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 27  VIPRFVERTSQGIREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISV 86

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ++KP I T CMGQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 87  YINSPGGSFTALTAIYDTMQYVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLI 146

Query: 138 HQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP      GQ SD+E  A +I++++ +L E+  K+  +  +++ + ++RD I++A +A 
Sbjct: 147 HQPYSETGRGQVSDLEIAANEILRMRSQLEEMLAKHSTRPIDKIREDIERDKILTAEDAL 206

Query: 197 DWGVVDKVLMSRI 209
           ++G++D+++ +R 
Sbjct: 207 EYGLIDQIITTRK 219


>gi|18281939|sp|Q9CBY3|CLPP1_MYCLE RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
          Length = 200

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 84/176 (47%), Positives = 119/176 (67%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           +  +Y RLL ERI+F+  ++ D++A  +CAQ+L L AE+  K+ISLYINSPGG ++AGMA
Sbjct: 17  TDSVYERLLSERIIFLGSEVNDNIANRLCAQILLLAAEDAFKDISLYINSPGGSISAGMA 76

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYDTM      I+T+ MG AASMG  LL+AG +G R+ALP+ARIL+HQP GG +G A+DI
Sbjct: 77  IYDTMVLAPCDIATYAMGMAASMGEFLLAAGTRGKRYALPHARILMHQPLGGVTGSAADI 136

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
              A+    IK+ +  +  +  G+  E +E   DRD   +ASEA ++G VD ++  
Sbjct: 137 AIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTASEALEYGFVDHIITR 192


>gi|293400411|ref|ZP_06644557.1| Clp protease [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306811|gb|EFE48054.1| Clp protease [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 194

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 93/192 (48%), Positives = 131/192 (68%), Gaps = 1/192 (0%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + +VP ++E+    ER YD+YS LLKERI+ +TG+I+D M++ ICAQLL+L + +    I
Sbjct: 1   MVIVPTIIERNAASERVYDLYSCLLKERIIILTGEIDDAMSSSICAQLLYLASISKD-PI 59

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGG V+AG+AIYD M++I   I+T  MG  ASM ++LL AGEKG R AL NA I
Sbjct: 60  QMYINSPGGSVSAGLAIYDVMKYISCEIATIGMGMCASMAAVLLCAGEKGKRSALQNAEI 119

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG  GQA D+E  AQ I ++K+RL  I    CG+    ++K  DRD+ M A  A
Sbjct: 120 MIHQPLGGMQGQAKDMEIAAQHINQLKQRLYHILSSQCGQPIATIKKDCDRDYYMDAISA 179

Query: 196 CDWGVVDKVLMS 207
             +G++D V+ +
Sbjct: 180 KAYGLIDTVIEN 191


>gi|308405118|ref|ZP_07494258.2| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis SUMu012]
 gi|308365324|gb|EFP54175.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis SUMu012]
          Length = 197

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 84/176 (47%), Positives = 118/176 (67%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           +  +Y RLL ERI+F+  ++ D +A  +CAQ+L L AE+  K+ISLYINSPGG ++AGMA
Sbjct: 14  TDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMA 73

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYDTM      I+T+ MG AASMG  LL+AG KG R+ALP+ARIL+HQP GG +G A+DI
Sbjct: 74  IYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADI 133

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
              A+    IK+ +  +  +  G+  E +E   DRD   +A+EA ++G VD ++  
Sbjct: 134 AIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITR 189


>gi|289645297|ref|ZP_06477293.1| Endopeptidase Clp [Frankia symbiont of Datisca glomerata]
 gi|289504893|gb|EFD25995.1| Endopeptidase Clp [Frankia symbiont of Datisca glomerata]
          Length = 201

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 85/189 (44%), Positives = 122/189 (64%), Gaps = 1/189 (0%)

Query: 25  QTNRG-ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           Q+  G +    ++ RLL+ RIVF+   +ED +A  ICA+LL L AE+ +++I LYINSPG
Sbjct: 7   QSGNGYQADGPVFDRLLRSRIVFLGSVVEDAVANEICAKLLLLSAEDRERDIQLYINSPG 66

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           G V+AGMAIYDTMQ++   + T  +G A SMG  LL AG  G R+AL +A++++HQPSGG
Sbjct: 67  GSVSAGMAIYDTMQYVTNDVVTVALGFAGSMGQFLLCAGAAGKRYALAHAQVMMHQPSGG 126

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
             G ASDI    +  +  KR + E    + G+T E++E+  DRD   +A EA D+G VD 
Sbjct: 127 LGGTASDIAIQLEQTLYTKRTIQERIAFHTGRTVEQIERDSDRDRWFTAREARDYGFVDH 186

Query: 204 VLMSRIDIE 212
           V+ +  D+ 
Sbjct: 187 VVTAAADLP 195


>gi|294634100|ref|ZP_06712655.1| Clp protease [Streptomyces sp. e14]
 gi|292829914|gb|EFF88268.1| Clp protease [Streptomyces sp. e14]
          Length = 212

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 86/200 (43%), Positives = 128/200 (64%), Gaps = 1/200 (0%)

Query: 17  GLVPMVVEQTNRGERSYD-IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
            L P   +      R  D + ++LL +RIVF+  Q+++  A  +CAQLL L AE+P+ +I
Sbjct: 6   ALAPRAEDGDTPPSRFDDHLAAQLLAQRIVFLGTQVDEVSANRVCAQLLLLSAEDPRTDI 65

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +L INSPGG VTAG+AIYDTMQ +   +ST  MG AASMG  LL+ G  G RFALP+ARI
Sbjct: 66  ALCINSPGGSVTAGLAIYDTMQLVPNDVSTLAMGFAASMGQFLLTVGTPGKRFALPHARI 125

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPS G  G  +DIE  A+++   KR +  +  ++ G++ E + +  DRD   +A +A
Sbjct: 126 MMHQPSAGIGGTTADIEIQAENLEYTKRTMERLTARHTGQSEETIARDGDRDRWFTAEQA 185

Query: 196 CDWGVVDKVLMSRIDIEEKS 215
            ++G+VD+V+ S  D+   +
Sbjct: 186 REYGMVDRVVDSLADVRPAT 205


>gi|302545417|ref|ZP_07297759.1| Clp protease [Streptomyces hygroscopicus ATCC 53653]
 gi|302463035|gb|EFL26128.1| Clp protease [Streptomyces himastatinicus ATCC 53653]
          Length = 223

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 92/193 (47%), Positives = 137/193 (70%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP  VE+T++G R YD Y++L +ER++F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 25  VVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISV 84

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQF+KP I T CMGQAAS  ++LL+AG  G R ALPNARIL+
Sbjct: 85  YINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARILI 144

Query: 138 HQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP      GQ SD+E  A +I++++ +L E+  K+     E++   ++RD I++A E+ 
Sbjct: 145 HQPYSETGRGQVSDLEIAANEILRMRSQLEEMLAKHSTTPIEKIRDDIERDKILTAEESL 204

Query: 197 DWGVVDKVLMSRI 209
           ++G+VD+++ +R 
Sbjct: 205 EYGLVDQIVSTRK 217


>gi|295395010|ref|ZP_06805222.1| ATP-dependent Clp protease proteolytic subunit [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294972169|gb|EFG48032.1| ATP-dependent Clp protease proteolytic subunit [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 215

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 91/197 (46%), Positives = 139/197 (70%), Gaps = 2/197 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++R++F+  Q++D  A  + AQLL LE+++P ++I+L
Sbjct: 19  VMPQFEERTPYGFKRQDPYTKLFEDRVIFLGVQVDDTSADDVMAQLLVLESQDPDRDITL 78

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+IKP I T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 79  YINSPGGSFTALTAIYDTMQYIKPEIQTVCLGQAASAAAVLLAAGAPGKRLALPNARVLI 138

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+  G   GQASD+E  A ++++++R L E   K+  K+ +EV   ++RD  ++A EA
Sbjct: 139 HQPAMQGQGQGQASDLEIQANEVLRMRRWLEETLAKHSNKSADEVSNDIERDLFLTAEEA 198

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G+VD+VL SR  ++
Sbjct: 199 KNYGLVDQVLSSRKGVK 215


>gi|254821428|ref|ZP_05226429.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           intracellulare ATCC 13950]
          Length = 199

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 84/176 (47%), Positives = 118/176 (67%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           +  +Y RLL ERI+F+  ++ D +A  +CAQ+L L AE+  K+ISLYINSPGG ++AGMA
Sbjct: 14  TDSVYERLLSERIIFLGSEVSDEIANRLCAQILLLAAEDSTKDISLYINSPGGSISAGMA 73

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYDTM      I+T+ MG AASMG  LL+AG KG R+ALP+ARIL+HQP GG +G A+DI
Sbjct: 74  IYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADI 133

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
              A+    IK+ +  +  +  G++ E +E   DRD   +A EA ++G VD ++  
Sbjct: 134 AIQAEQFHVIKKEMFRLNAEFTGQSIERIEADSDRDRWFTAQEALEYGFVDHIITR 189


>gi|302542936|ref|ZP_07295278.1| Clp protease [Streptomyces hygroscopicus ATCC 53653]
 gi|302460554|gb|EFL23647.1| Clp protease [Streptomyces himastatinicus ATCC 53653]
          Length = 217

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 87/200 (43%), Positives = 127/200 (63%), Gaps = 1/200 (0%)

Query: 17  GLVPMVVEQTNRGERSYD-IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
            L P   E      R  D + ++LL +RIVF+  Q+++  A  +CAQLL L AE+P+ +I
Sbjct: 11  ALSPRADEGDTPPSRFDDHLAAQLLTQRIVFLGTQVDEVSANRVCAQLLLLSAEDPRTDI 70

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SLYINSPGG VTAG+AIYDTM+ I   ++T  MG AASMG  LL+ G  G R+ALPNARI
Sbjct: 71  SLYINSPGGSVTAGLAIYDTMRLIPNDVATLAMGFAASMGQFLLTVGTAGKRYALPNARI 130

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPS G  G  +DI   A+++   K+ +  I  ++ G+T E + +  DRD   +A +A
Sbjct: 131 MMHQPSAGIGGTTADIAIQAENLEFTKKAIERITAEHTGQTQETISRDGDRDRWFTAEQA 190

Query: 196 CDWGVVDKVLMSRIDIEEKS 215
            ++G+VD ++ S  D+   +
Sbjct: 191 KEYGMVDSIVESLSDVRPGA 210


>gi|296139202|ref|YP_003646445.1| endopeptidase Clp [Tsukamurella paurometabola DSM 20162]
 gi|296027336|gb|ADG78106.1| Endopeptidase Clp [Tsukamurella paurometabola DSM 20162]
          Length = 195

 Score =  222 bits (566), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 76/188 (40%), Positives = 126/188 (67%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+E+   GER  D+YS LL ER+V++   I+  +A  + AQLLFLE++NP  +I LY
Sbjct: 6   IPTVIERRPNGERVSDVYSYLLSERVVYLGTAIDAGVANAVVAQLLFLESDNPDSDIQLY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           IN  GG   A +AIYDTM++I+ PI+T C+GQA ++G++LL+AG +G R ALP++R++LH
Sbjct: 66  INCEGGDPAAMLAIYDTMRYIRSPIATTCVGQAVAVGAVLLAAGARGKRVALPHSRVVLH 125

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP+    G   D+   A ++V+++ ++ +I   + G+T E +    D D + +  +A  +
Sbjct: 126 QPAAQGRGTIPDLILQADEVVRVRGQMEQILASHTGQTAERLRADTDHDRVFTPPDAVAY 185

Query: 199 GVVDKVLM 206
           G++D+V+ 
Sbjct: 186 GLIDEVIE 193


>gi|312891186|ref|ZP_07750708.1| Endopeptidase Clp [Mucilaginibacter paludis DSM 18603]
 gi|311296353|gb|EFQ73500.1| Endopeptidase Clp [Mucilaginibacter paludis DSM 18603]
          Length = 230

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 82/200 (41%), Positives = 132/200 (66%)

Query: 6   CAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF 65
            ++  +  +   + P + E+        D++SRL+ +RI+F+   ++D +A +I AQLLF
Sbjct: 27  ISRVQNTSLPTSMTPYITEERQLNVAQMDVFSRLMMDRIIFLGEAVDDKIANIIQAQLLF 86

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L++ + +K+I LY+NSPGG V AG+ IYDTMQ I P ++T C+G A S G++LL AG  G
Sbjct: 87  LQSVDAKKDIQLYVNSPGGSVYAGLGIYDTMQLIGPDVATICIGMALSFGAVLLCAGAAG 146

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
            R AL ++R+++HQP GG  GQASDIE  A+ ++ +K+ L  I  K+  + Y+ V    D
Sbjct: 147 KRAALKHSRVMIHQPLGGVQGQASDIEITARQVLILKKELYNIISKHSKQDYQTVHDASD 206

Query: 186 RDHIMSASEACDWGVVDKVL 205
           RD+ M+A+EA  +G++D++L
Sbjct: 207 RDYWMTATEAKAFGMIDEIL 226


>gi|145347023|ref|XP_001417979.1| chloroplast Clp protease, subunit of ClpP peptidase complex
           [Ostreococcus lucimarinus CCE9901]
 gi|144578207|gb|ABO96272.1| chloroplast Clp protease, subunit of ClpP peptidase complex
           [Ostreococcus lucimarinus CCE9901]
          Length = 319

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 88/203 (43%), Positives = 126/203 (62%), Gaps = 7/203 (3%)

Query: 3   FEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQ 62
           ++      +     G    VV +   G      +  LL+ RIVF+  Q++D  A  + +Q
Sbjct: 75  YDAVNASGAPGARAGP---VVPRDQSG----SPFDSLLRNRIVFLGSQVDDFNADAVISQ 127

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           LL L+ ++P KEI L+INSPGG VTAGM IYD MQF + P+ST C+G AASMG+ LL++G
Sbjct: 128 LLLLDQQDPTKEIKLFINSPGGSVTAGMGIYDAMQFCRAPVSTVCLGLAASMGAFLLASG 187

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
           EKG R ++PNARI++HQP GG  G A DIE  A++I+  K  LN +   + G+  + +++
Sbjct: 188 EKGRRMSMPNARIMIHQPLGGAQGSAVDIEIQAKEIMHHKANLNRLMAFHTGQDVKTIDE 247

Query: 183 TLDRDHIMSASEACDWGVVDKVL 205
             DRD  MS  EA  +GV+D V+
Sbjct: 248 DTDRDRYMSPLEAKQYGVIDIVI 270


>gi|149178550|ref|ZP_01857137.1| ATP-dependent clp protease proteolytic subunit [Planctomyces maris
           DSM 8797]
 gi|148842568|gb|EDL56944.1| ATP-dependent clp protease proteolytic subunit [Planctomyces maris
           DSM 8797]
          Length = 208

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 85/207 (41%), Positives = 135/207 (65%), Gaps = 5/207 (2%)

Query: 13  DVFLGLVPMVVEQTNRG---ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           D   G +P    Q  R    +R   I   LL  RI+F+   I D  A LI  +LL+L++E
Sbjct: 3   DPLSGQMPTQANQRARSYSQQRQMGIGDLLLDNRIIFLDSVINDASANLIVMKLLYLQSE 62

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           N  ++I+LY+NSPGG VT+ MAIYDTMQFI+  ++T+C+G AAS G++L++ G+KG R+ 
Sbjct: 63  NRHQDINLYVNSPGGSVTSTMAIYDTMQFIECDVATYCVGLAASGGAILVAGGQKGKRYI 122

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LP+A++++HQP G   GQ SDIE  A+DI+  +  LN+I   + G++ E++     RD  
Sbjct: 123 LPHAKMMIHQPYGEVGGQVSDIEIQAKDILDTREVLNQILANHTGQSIEQIALDTSRDRF 182

Query: 190 MSASEACDWGVVDKVLMSRIDIEEKSK 216
           ++A ++ ++G+VD++L+   D ++K K
Sbjct: 183 LTAPQSVEYGLVDELLVR--DKKDKDK 207


>gi|116670950|ref|YP_831883.1| ATP-dependent Clp protease proteolytic subunit [Arthrobacter sp.
           FB24]
 gi|116611059|gb|ABK03783.1| ATP-dependent Clp protease proteolytic subunit ClpP [Arthrobacter
           sp. FB24]
          Length = 226

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 93/211 (44%), Positives = 143/211 (67%), Gaps = 2/211 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           M++   +   +      ++P   E+T  G +  D Y++L ++RI+F+  Q++D  A  + 
Sbjct: 8   MNYNFGSSAGNLPTSRYVLPQFEERTPYGFKRQDPYTKLFEDRIIFLGVQVDDASADDVM 67

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLL LE+ +P ++I+LYINSPGG  TA  AIYDTMQ+I+P I T C+GQAAS  ++LL+
Sbjct: 68  AQLLVLESTDPDRDITLYINSPGGSFTAMTAIYDTMQYIRPEIQTVCLGQAASAAAVLLA 127

Query: 121 AGEKGMRFALPNARILLHQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYE 178
           AG  G R ALPNAR+L+HQP  SGG  GQASD+E  A ++++++  L +   K+ G+T E
Sbjct: 128 AGTPGKRLALPNARVLIHQPALSGGQGGQASDLEIQAAEVMRMRSWLEDTLAKHSGRTSE 187

Query: 179 EVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           +V   ++RD I++A+EA  +G++D+VL SR 
Sbjct: 188 QVNNDIERDKILTAAEAQSYGLIDQVLDSRK 218


>gi|239979446|ref|ZP_04701970.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces albus
           J1074]
 gi|291451316|ref|ZP_06590706.1| ATP-dependent Clp protease proteolytic subunit 4 [Streptomyces
           albus J1074]
 gi|291354265|gb|EFE81167.1| ATP-dependent Clp protease proteolytic subunit 4 [Streptomyces
           albus J1074]
          Length = 227

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 92/216 (42%), Positives = 143/216 (66%), Gaps = 8/216 (3%)

Query: 2   SFEGCAKKDSEDVFLG-------LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDH 54
           +F G     ++  + G       +VP  VE+T++G R YD Y++L +ER++F+  QI+D 
Sbjct: 7   NFPGSGALGADGEYAGPRAESRYIVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDA 66

Query: 55  MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASM 114
            A  + AQLL LE+ +P ++IS+YINSPGG  TA  AIYDTMQF+KP I T CMGQAAS 
Sbjct: 67  SANDVMAQLLCLESIDPDRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASA 126

Query: 115 GSLLLSAGEKGMRFALPNARILLHQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNC 173
            ++LL+AG  G R ALPNAR+L+HQP      GQ SD+E  A +I++++ +L E+  K+ 
Sbjct: 127 AAVLLAAGSPGKRMALPNARVLIHQPYSETGRGQVSDLEIAANEILRMRAQLEEMLAKHS 186

Query: 174 GKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
               +++   ++RD I++A +A  +G++D+++ +R 
Sbjct: 187 TTPLDKIRDDIERDKILTAEDALAYGLIDQIVSTRK 222


>gi|331695808|ref|YP_004332047.1| ATP-dependent Clp protease proteolytic subunit [Pseudonocardia
           dioxanivorans CB1190]
 gi|326950497|gb|AEA24194.1| ATP-dependent Clp protease proteolytic subunit [Pseudonocardia
           dioxanivorans CB1190]
          Length = 208

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 97/210 (46%), Positives = 143/210 (68%), Gaps = 8/210 (3%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MSFE  + +        ++P  VE+T+ G +  + Y++L +ERI+F+  QI+D  A  + 
Sbjct: 1   MSFEMPSSRY-------VLPSFVERTSYGVKESNPYNKLFEERIIFLGVQIDDASANDVM 53

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLL LE+ +P +EIS+YINSPGG  T+ MAIYDTMQFI+P I T C+GQAAS  ++LL+
Sbjct: 54  AQLLCLESADPDREISMYINSPGGSFTSLMAIYDTMQFIRPDIQTVCLGQAASAAAVLLA 113

Query: 121 AGEKGMRFALPNARILLHQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
           AG  G R A+ NARIL+HQP+   F GQ SD+E  A +I +++R L     K+ G+T E+
Sbjct: 114 AGTPGRRLAVQNARILIHQPATEGFYGQVSDLEIQAAEITRMRRLLETTLAKHSGRTPEQ 173

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           V   ++RD I++A EA ++G+VD+++ SR 
Sbjct: 174 VHDDIERDRILTADEAKEYGIVDEIIQSRK 203


>gi|68535617|ref|YP_250322.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           jeikeium K411]
 gi|109878267|sp|Q4JWV3|CLPP2_CORJK RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|68263216|emb|CAI36704.1| ATP-dependent Clp protease proteolytic subunit 2 [Corynebacterium
           jeikeium K411]
          Length = 209

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 88/193 (45%), Positives = 136/193 (70%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE ++ G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE  +P ++I++
Sbjct: 12  ILPSFVEHSSYGAKESNPYNKLFEERIIFLGTQVDDASANDIMAQLLVLEGLDPDRDITM 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++P + T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 72  YINSPGGSFTSLMAIYDTMQYVRPDVQTVCLGQAASAAAVLLAAGTPGKRAALPNARVLI 131

Query: 138 HQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+ GG  GQ SD+E  A++I ++++ + E   ++ GK+ E+V    DRD I++A EA 
Sbjct: 132 HQPATGGVQGQVSDLEIQAKEIERMRKLMEETLARHTGKSAEQVRIDTDRDKILTAEEAK 191

Query: 197 DWGVVDKVLMSRI 209
           ++G+VD+V   R 
Sbjct: 192 EYGIVDQVFDYRK 204


>gi|168013186|ref|XP_001759282.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689595|gb|EDQ75966.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 205

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 80/175 (45%), Positives = 119/175 (68%)

Query: 31  RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGM 90
           +  D  + LL++RI+F+  Q++D  A +I +QLL L+A++P K+I L+INSPGG VTAGM
Sbjct: 2   QDLDPATMLLQQRILFLGSQVDDFSADVIISQLLLLDAQDPTKDIKLFINSPGGSVTAGM 61

Query: 91  AIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASD 150
            IYD M+  K  +ST C G AASMG+ LL+AG KG R+ +PNAR+++HQP GG  G A D
Sbjct: 62  GIYDAMKLCKADVSTVCFGLAASMGAFLLAAGTKGKRYCMPNARVMIHQPLGGAGGTAID 121

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
                ++++  K +L +I  +  G+   +VE   DRD+ M+A EA ++G+VD V+
Sbjct: 122 GALQVREMMYHKYKLQKIMSRLTGQPEAKVEADTDRDNFMNAWEAKEYGLVDGVI 176


>gi|260578313|ref|ZP_05846229.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Corynebacterium jeikeium ATCC 43734]
 gi|258603615|gb|EEW16876.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Corynebacterium jeikeium ATCC 43734]
          Length = 209

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 88/193 (45%), Positives = 136/193 (70%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE ++ G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE  +P ++I++
Sbjct: 12  ILPSFVEHSSYGAKESNPYNKLFEERIIFLGTQVDDASANDIMAQLLVLEGLDPDRDITM 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++P + T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 72  YINSPGGSFTSLMAIYDTMQYVRPDVQTVCLGQAASAAAVLLAAGTPGKRAALPNARVLI 131

Query: 138 HQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+ GG  GQ SD+E  A++I ++++ + E   ++ GK+ E+V    DRD I++A EA 
Sbjct: 132 HQPATGGVQGQVSDLEIQAKEIERMRKLMEETLARHTGKSAEQVRIDTDRDKILTAEEAK 191

Query: 197 DWGVVDKVLMSRI 209
           ++G+VD+V   R 
Sbjct: 192 EYGIVDQVFDYRK 204


>gi|255027871|ref|ZP_05299857.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes FSL J2-003]
          Length = 167

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 96/167 (57%), Positives = 129/167 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT+RGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL+A++P+K+I
Sbjct: 1   MNLIPTVIEQTSRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG ++AGMAIYDTM F+K  + T  MG AASMGS LL+AG  G RFALPNA I
Sbjct: 61  FLYINSPGGSISAGMAIYDTMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
           ++HQP GG  GQA++IE  A+ I+KIK R+N I  +  G+ YE + +
Sbjct: 121 MIHQPLGGAQGQATEIEIAARHILKIKERMNTIMAEKTGQPYEVIAR 167


>gi|297199670|ref|ZP_06917067.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sviceus ATCC 29083]
 gi|197713960|gb|EDY57994.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sviceus ATCC 29083]
          Length = 226

 Score =  222 bits (565), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 87/193 (45%), Positives = 137/193 (70%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T++G R YD Y++L +ER++F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 27  VIPRFVERTSQGIREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISV 86

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQF+KP + T CMGQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 87  YINSPGGSFTALTAIYDTMQFVKPDVQTVCMGQAASAAAILLAAGTPGKRMALPNARVLI 146

Query: 138 HQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP      GQ SD+E  A +I++++ +L ++  K+     E++ + ++RD I++A +A 
Sbjct: 147 HQPYSETGRGQVSDLEIAANEILRMRAQLEDLLAKHSTTPIEKIREDIERDKILTADDAL 206

Query: 197 DWGVVDKVLMSRI 209
            +G++D+++ +R 
Sbjct: 207 AYGLIDQIISTRK 219


>gi|116786337|gb|ABK24071.1| unknown [Picea sitchensis]
          Length = 341

 Score =  222 bits (565), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 76/176 (43%), Positives = 116/176 (65%)

Query: 31  RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGM 90
              D  S LL++RIVF+  Q++D  A  I +QLL L+ E+  K+I L+INSPGG VTAGM
Sbjct: 96  EDLDTTSMLLRQRIVFLGSQVDDVSADFIISQLLLLDLEDSTKDIKLFINSPGGSVTAGM 155

Query: 91  AIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASD 150
            IYD M+  K  +ST C G AASMG+ LL++G +G RF +PNA++++HQP GG  G A +
Sbjct: 156 GIYDAMKLCKADVSTVCFGLAASMGAFLLASGTRGKRFCMPNAKVMIHQPLGGGGGSAIE 215

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           +   A++++  K +L +I  +   K+ E++ K  DRD+ ++  EA ++G+ D V+ 
Sbjct: 216 MALQAKELMYHKIKLTKIMSRLTDKSGEQIAKDTDRDYFLNPWEAVEYGLADAVID 271


>gi|163841992|ref|YP_001626397.1| ATP-dependent Clp protease proteolytic subunit [Renibacterium
           salmoninarum ATCC 33209]
 gi|162955468|gb|ABY24983.1| ATP-dependent endopeptidase clp proteolytic subunit [Renibacterium
           salmoninarum ATCC 33209]
          Length = 227

 Score =  222 bits (565), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 94/207 (45%), Positives = 141/207 (68%), Gaps = 4/207 (1%)

Query: 5   GCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLL 64
           G A+      +  ++P   E+T  G +  D Y++L ++RI+F+  Q++D  A  I AQLL
Sbjct: 15  GAAENLPTSRY--ILPQFEERTPYGFKRQDPYTKLFEDRIIFLGVQVDDASADDIMAQLL 72

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
            LE+ +P ++I+LYINSPGG  TA  AIYDTMQ+I+P I T C+GQAAS  ++LL+AG  
Sbjct: 73  VLESTDPDRDITLYINSPGGSFTAMTAIYDTMQYIRPEIQTVCLGQAASAAAVLLAAGTP 132

Query: 125 GMRFALPNARILLHQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
           G R ALPNAR+L+HQP  SGG  GQASD+E  A ++++++  L +    + G T E++  
Sbjct: 133 GKRLALPNARVLIHQPALSGGQGGQASDLEIQANEVMRMRSWLEDTLAMHSGLTPEQLNN 192

Query: 183 TLDRDHIMSASEACDWGVVDKVLMSRI 209
            ++RD I++A+EA D+G++D+VL SR 
Sbjct: 193 DIERDKILTAAEALDYGLIDQVLESRK 219


>gi|17373662|sp|Q9ZH58|CLPP2_STRCO RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
          Length = 218

 Score =  222 bits (565), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 87/193 (45%), Positives = 137/193 (70%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T++G R YD Y++L +ER++F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 19  VIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISV 78

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ++KP + T CMGQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 79  YINSPGGSFTALTAIYDTMQYVKPDVQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLI 138

Query: 138 HQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP      GQ SD+E  A +I++++ +L E+  K+     E++ + ++RD I++A +A 
Sbjct: 139 HQPYSETGRGQVSDLEIAANEILRMRSQLEEMLAKHSTTPVEKIREDIERDKILTAEDAL 198

Query: 197 DWGVVDKVLMSRI 209
            +G++D+++ +R 
Sbjct: 199 SYGLIDQIITTRK 211


>gi|297195743|ref|ZP_06913141.1| ATP-dependent Clp protease proteolytic subunit 5 [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297152927|gb|EFH32055.1| ATP-dependent Clp protease proteolytic subunit 5 [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 211

 Score =  222 bits (565), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 85/194 (43%), Positives = 126/194 (64%), Gaps = 2/194 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P + E+T+ G R+ D YS+L+ ERIVF+   ++D  A  + AQ L LE E P ++I L
Sbjct: 9   VLPELTERTSFGTRTLDPYSKLMSERIVFLGTAVDDTAANDVIAQFLHLEYEAPDQDICL 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG ++A  AIYDTMQ +   ++T C+GQAAS    LL+AG  G R ALP ARI++
Sbjct: 69  YINSPGGSLSAMSAIYDTMQVVMCDVATTCLGQAASTAVALLTAGTPGKRMALPGARIVM 128

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
            QPS      GQ SD+E HA ++++++ +L    V++ G T E +   L+RD I  A+ A
Sbjct: 129 QQPSYEEPLRGQPSDLEIHAAELLRLREQLASTLVRHTGNTPERIAADLERDKIFDAAGA 188

Query: 196 CDWGVVDKVLMSRI 209
            ++G++D V+ SR 
Sbjct: 189 REYGLIDHVVTSRK 202


>gi|11466963|ref|NP_054384.1| ATP-dependent Clp protease proteolytic subunit [Epifagus
           virginiana]
 gi|231812|sp|P30063|CLPP_EPIVI RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|336919|gb|AAA65858.1| protease [Epifagus virginiana]
          Length = 196

 Score =  222 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 77/189 (40%), Positives = 119/189 (62%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  Q    E     D+Y+RL +ER++F+  +++  ++  +   +++L  E+  KEI 
Sbjct: 5   VPKVPFQIPGEEDASWVDVYNRLYRERLLFLGQEVDSDISNQLIGLMVYLSIEDDTKEIY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYDTMQF++P + T CMG AASMGS LL  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGVAIYDTMQFVRPEVHTICMGLAASMGSFLLVGGEITKRLAFPHARVM 124

Query: 137 LHQPSGGFSG-QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP+  F G Q  +    A++++K++  L  +YV+  GK    + + ++RD  MSA +A
Sbjct: 125 IHQPASYFFGAQTGEFILEAEELLKLRETLTRVYVQRTGKPLWVISEDMERDVFMSAKDA 184

Query: 196 CDWGVVDKV 204
             +G+VD V
Sbjct: 185 QAYGIVDLV 193


>gi|238060618|ref|ZP_04605327.1| endopeptidase Clp [Micromonospora sp. ATCC 39149]
 gi|237882429|gb|EEP71257.1| endopeptidase Clp [Micromonospora sp. ATCC 39149]
          Length = 217

 Score =  222 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 89/194 (45%), Positives = 138/194 (71%), Gaps = 1/194 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T+ G +  + Y++L ++RI+F+  Q++D  A  + AQLL LE  +P ++I +
Sbjct: 15  VLPSFVERTSYGVKESNPYNKLFEDRIIFLGVQVDDASANDVMAQLLTLEGTDPDRDIIM 74

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+++P IST C+GQAAS  ++LL+AG  G R ALPN+RI++
Sbjct: 75  YINSPGGSFTAMTAIYDTMQYVRPDISTVCLGQAASAAAVLLAAGTPGKRMALPNSRIII 134

Query: 138 HQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+     GQ SDIE  A++I++++ +L E+  ++C +  E+V K +DRD IM+A E+ 
Sbjct: 135 HQPATEGGYGQGSDIEIQAREILRMRTQLEEMLSRHCNQPVEKVRKDIDRDKIMTAEESR 194

Query: 197 DWGVVDKVLMSRID 210
           ++G+VD +L SR  
Sbjct: 195 EYGLVDTILTSRKK 208


>gi|229915410|gb|ACQ90755.1| proteolytic subunit 2 of clp protease [Oocystis solitaria]
          Length = 204

 Score =  222 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 71/188 (37%), Positives = 125/188 (66%), Gaps = 2/188 (1%)

Query: 19  VPMVVEQTNRGE--RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +       +  D+++RL +ER++F+   ++D ++  +   +L+L AE   K+I 
Sbjct: 5   VPKVPFRLPGEPSAQWVDLFNRLYRERLLFLCQDLDDEVSNQLIGIMLYLNAEEKFKDIY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           ++INS GG VT G+A+YD M F++  +ST C+G AASM S +L+ G++G R ALP+ RI+
Sbjct: 65  IFINSLGGSVTCGIAVYDVMNFVEADVSTICVGTAASMASFVLAGGKRGKRIALPHTRIM 124

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQAS++   ++++ +++R++ +IY +   ++   + + +DRD  MSA EA 
Sbjct: 125 IHQPEGGGQGQASEVLSESEEVRRLRRQVGQIYAEQTSQSLNRISRDMDRDQFMSAREAK 184

Query: 197 DWGVVDKV 204
           ++G+VD+V
Sbjct: 185 EYGLVDQV 192


>gi|258564300|ref|XP_002582895.1| clp protease [Uncinocarpus reesii 1704]
 gi|237908402|gb|EEP82803.1| clp protease [Uncinocarpus reesii 1704]
          Length = 222

 Score =  222 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 95/176 (53%), Positives = 138/176 (78%), Gaps = 2/176 (1%)

Query: 42  ERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP 101
           ERI+ + G++++ ++  I AQLLFLEA+NP+K+ISLYINSPGG VTAG+AIYDTM +I+ 
Sbjct: 45  ERIICLNGEVDESVSASIVAQLLFLEADNPEKQISLYINSPGGSVTAGLAIYDTMTYIQS 104

Query: 102 PISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKI 161
           P+ST C+GQAASMGSLLL  GE G RF LP++ I++HQPSGG+ GQA+DI  HA++I+++
Sbjct: 105 PVSTICIGQAASMGSLLLCGGEPGKRFCLPHSSIMIHQPSGGYFGQATDIAIHAKEILRV 164

Query: 162 KRRLNEIYVKNCGK--TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
           +++LNEIY ++  K  + +E+EK ++RD+ M ASEA   G+VD ++  R   +E+ 
Sbjct: 165 RKQLNEIYKRHLTKEISLDEIEKLMERDYFMGASEALGMGIVDGIMDRRTKSKEEE 220


>gi|302551409|ref|ZP_07303751.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           viridochromogenes DSM 40736]
 gi|302469027|gb|EFL32120.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           viridochromogenes DSM 40736]
          Length = 235

 Score =  222 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 90/210 (42%), Positives = 140/210 (66%), Gaps = 1/210 (0%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS         +     ++P  VE+T++G R YD Y++L +ER++F+  QI+D  A  + 
Sbjct: 19  MSDSQGRYTGPQAESRYVIPRFVERTSQGIREYDPYAKLFEERVIFLGVQIDDASANDVM 78

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLL LE+ +P ++IS+YINSPGG  TA  AIYDTMQ++KP I T CMGQAAS  ++LL+
Sbjct: 79  AQLLCLESMDPDRDISVYINSPGGSFTALTAIYDTMQYVKPDIQTVCMGQAASAAAVLLA 138

Query: 121 AGEKGMRFALPNARILLHQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
           AG  G R ALPNAR+L+HQP      GQ SD+E  A +I++++ +L E+  K+     E+
Sbjct: 139 AGTPGKRMALPNARVLIHQPYSETGRGQVSDLEIAANEILRMRSQLEEMLAKHSTTPVEK 198

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           + + ++RD I++A +A  +G++D+++ +R 
Sbjct: 199 IREDIERDKILTAEDALSYGLIDQIITTRK 228


>gi|325963648|ref|YP_004241554.1| ATP-dependent Clp protease proteolytic subunit ClpP [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323469735|gb|ADX73420.1| ATP-dependent Clp protease proteolytic subunit ClpP [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 219

 Score =  221 bits (564), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 92/194 (47%), Positives = 136/194 (70%), Gaps = 2/194 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++RI+F+  Q++D  A  I AQLL LE+ +P ++I+L
Sbjct: 18  VLPQFEERTPYGFKRQDPYTKLFEDRIIFLGVQVDDASADDIMAQLLVLESTDPDRDITL 77

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+I+P I T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 78  YINSPGGSFTAMTAIYDTMQYIRPEIQTVCLGQAASAAAVLLAAGTPGKRLALPNARVLI 137

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASD+E  A ++++++  L +    + G+T E+V   ++RD I++A EA
Sbjct: 138 HQPALSGGQGGQASDLEIQAAEVMRMRSWLEDTLAHHSGRTSEQVNNDIERDKILTAEEA 197

Query: 196 CDWGVVDKVLMSRI 209
             +G++D+VL SR 
Sbjct: 198 QVYGLIDQVLDSRK 211


>gi|293189653|ref|ZP_06608370.1| Clp protease [Actinomyces odontolyticus F0309]
 gi|315604695|ref|ZP_07879758.1| ATP-dependent Clp protease proteolytic subunit [Actinomyces sp.
           oral taxon 180 str. F0310]
 gi|292821391|gb|EFF80333.1| Clp protease [Actinomyces odontolyticus F0309]
 gi|315313707|gb|EFU61761.1| ATP-dependent Clp protease proteolytic subunit [Actinomyces sp.
           oral taxon 180 str. F0310]
          Length = 214

 Score =  221 bits (564), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 93/211 (44%), Positives = 142/211 (67%), Gaps = 3/211 (1%)

Query: 2   SFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICA 61
            FE  A++  +  +  ++P   E+T  G R  + Y++L ++RIVF+  Q++D  A  + A
Sbjct: 6   YFEAVARQMPQARY--VLPDFEERTAYGFRRQNPYTKLFEDRIVFLGVQVDDASADDVMA 63

Query: 62  QLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSA 121
           QLL LE+++P   I++YINSPGG  TA  AIYDTMQ+IKP I T C+GQAAS  ++LL+A
Sbjct: 64  QLLVLESQDPDSLITMYINSPGGSFTALTAIYDTMQYIKPQIQTVCLGQAASAAAVLLAA 123

Query: 122 GEKGMRFALPNARILLHQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           G  G R ALPNAR+L+HQP+     GQASDI+  A +I +++  L +   K+ GK  E+V
Sbjct: 124 GSPGKRLALPNARVLIHQPAMEGMQGQASDIQIVADEIDRMRAWLEDTISKHSGKPVEQV 183

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
            + ++RD I++A +A ++G++D+VL SR  +
Sbjct: 184 RRDIERDKILTAPQAAEYGLIDQVLESRKAL 214


>gi|126348112|emb|CAJ89833.1| putative ATP-dependent Clp protease proteolytic subunit 1
           [Streptomyces ambofaciens ATCC 23877]
          Length = 217

 Score =  221 bits (564), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 85/181 (46%), Positives = 120/181 (66%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           + ++LL +RIV +  Q+++  A  +CAQLL L AE+P+ +ISLYINSPGG V AG+AIYD
Sbjct: 30  LAAQLLTQRIVLLGTQVDEVSANRVCAQLLILSAEDPRTDISLYINSPGGSVHAGLAIYD 89

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM+ I   +ST  MG AASMG  LLS G  G R ALPNARI++HQPS G  G  +DIE  
Sbjct: 90  TMRLIPNDVSTLAMGFAASMGQFLLSVGAAGKRHALPNARIMMHQPSAGIGGTTADIEIQ 149

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           A ++   KR +  I  ++ G++ E + +  DRD   +A EA ++G+VD+V+ S  D+   
Sbjct: 150 ADNLEFTKRTIERITAEHTGQSPETISRDGDRDRWFTAEEAKEYGMVDQVVQSLADVRPA 209

Query: 215 S 215
           +
Sbjct: 210 A 210


>gi|171743308|ref|ZP_02919115.1| hypothetical protein BIFDEN_02439 [Bifidobacterium dentium ATCC
           27678]
 gi|171278922|gb|EDT46583.1| hypothetical protein BIFDEN_02439 [Bifidobacterium dentium ATCC
           27678]
          Length = 235

 Score =  221 bits (564), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 85/199 (42%), Positives = 138/199 (69%), Gaps = 3/199 (1%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
            +D +  ++P   E+T  G +  D Y+RL ++RI+F+  Q++D  A  I AQLL LE+++
Sbjct: 38  PQDRY--VLPQFEEKTPYGFKRQDPYTRLFEDRIIFMGVQVDDTSADDIMAQLLVLESQD 95

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
           P +++ +YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL+AG KG R  L
Sbjct: 96  PNRDVMMYINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLAAGTKGKRLML 155

Query: 131 PNARILLHQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           PNAR+L+HQP+     G+A++IE  A+++++++  L +   K+ G+  E++ K ++ D  
Sbjct: 156 PNARVLIHQPAIDQGFGKATEIEIQAKEMLRMREWLEDTLAKHTGQDVEKIRKDIEVDTF 215

Query: 190 MSASEACDWGVVDKVLMSR 208
           ++A+EA  +G+VD+VL  R
Sbjct: 216 LTAAEAKAYGIVDEVLEHR 234


>gi|330465579|ref|YP_004403322.1| endopeptidase Clp [Verrucosispora maris AB-18-032]
 gi|328808550|gb|AEB42722.1| endopeptidase Clp [Verrucosispora maris AB-18-032]
          Length = 195

 Score =  221 bits (564), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 84/186 (45%), Positives = 125/186 (67%), Gaps = 2/186 (1%)

Query: 29  GERSY--DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVV 86
           G+R++   ++ RLL+ERIVF+  ++ D  A  I AQ+L L AE+  ++I LYINSPGG V
Sbjct: 8   GQRTFGDQVFERLLRERIVFLGSEVTDEAANRITAQILLLAAEDSTRDIRLYINSPGGSV 67

Query: 87  TAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG 146
           +AGMA+YDTM+F+   +ST  +G A SMG  LL AG  G R+ALP+ RIL+HQPSGG  G
Sbjct: 68  SAGMAVYDTMRFVPNDVSTLALGLAGSMGQFLLCAGTAGKRYALPHTRILMHQPSGGMGG 127

Query: 147 QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
            ASDI   A++++ +KR + E+  ++ G+   E+++  DRD   +A +A  +G++D VL 
Sbjct: 128 TASDITIQAENMLHVKRTMQELIARHSGRDLTEIQQDWDRDRWFTAEQARTYGLIDHVLT 187

Query: 207 SRIDIE 212
           +   I 
Sbjct: 188 TTTQIP 193


>gi|306823253|ref|ZP_07456629.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           dentium ATCC 27679]
 gi|304553885|gb|EFM41796.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           dentium ATCC 27679]
          Length = 235

 Score =  221 bits (564), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 85/199 (42%), Positives = 138/199 (69%), Gaps = 3/199 (1%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
            +D +  ++P   E+T  G +  D Y+RL ++RI+F+  Q++D  A  I AQLL LE+++
Sbjct: 38  PQDRY--VLPQFEEKTPYGFKRQDPYTRLFEDRIIFMGVQVDDTSADDIMAQLLVLESQD 95

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
           P +++ +YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL+AG KG R  L
Sbjct: 96  PNRDVMMYINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLAAGTKGKRLML 155

Query: 131 PNARILLHQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           PNAR+L+HQP+     G+A++IE  A+++++++  L +   K+ G+  E++ K ++ D  
Sbjct: 156 PNARVLIHQPAIDQGFGKATEIEIQAKEMLRMREWLEDTLAKHTGQDVEKIRKDIEVDTF 215

Query: 190 MSASEACDWGVVDKVLMSR 208
           ++A+EA  +G+VD+VL  R
Sbjct: 216 LTAAEAKAYGIVDEVLEHR 234


>gi|56201842|dbj|BAD73292.1| putative ATP-dependent Clp protease, proteolytic subunit [Oryza
           sativa Japonica Group]
 gi|125526129|gb|EAY74243.1| hypothetical protein OsI_02123 [Oryza sativa Indica Group]
 gi|125570557|gb|EAZ12072.1| hypothetical protein OsJ_01953 [Oryza sativa Japonica Group]
          Length = 308

 Score =  221 bits (564), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 81/176 (46%), Positives = 120/176 (68%)

Query: 31  RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGM 90
              D  + LL++RIVF+   ++D  A LI +QLL L+AE+  K+I L+INSPGG +TAGM
Sbjct: 68  EELDTTNMLLRQRIVFLGSPVDDMSADLIISQLLLLDAEDKTKDIKLFINSPGGSITAGM 127

Query: 91  AIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASD 150
            +YD M+F K  IST C G AASMG+ LL+AG KG RF +PNARI++HQPSGG  G+ ++
Sbjct: 128 GVYDAMKFCKADISTVCFGLAASMGAFLLAAGTKGKRFCMPNARIMIHQPSGGAGGKVTE 187

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           +    ++++  K ++N+I  +  GK  E++++    D+ MS  EA D+G+VD V+ 
Sbjct: 188 MGLQIREMMYEKIKINKILSRITGKPEEQIDEDTKFDYFMSPWEAKDYGIVDSVID 243


>gi|239983579|ref|ZP_04706103.1| ATP-dependent Clp protease proteolytic subunit 1 [Streptomyces
           albus J1074]
          Length = 211

 Score =  221 bits (564), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 84/189 (44%), Positives = 123/189 (65%)

Query: 25  QTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG 84
           +T        +  +LL +RIV +  Q+++  A  +CAQLL L AE+P+ +ISLYINSPGG
Sbjct: 14  ETAPTRYDDQLAGQLLTQRIVLLGTQVDETSANRVCAQLLLLSAEDPRTDISLYINSPGG 73

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
            VTAG+AIYDTM+ I   +ST  MG AASMG  LL+ G  G RFALPNARI++HQPS G 
Sbjct: 74  SVTAGLAIYDTMRLIPNDVSTLAMGFAASMGQFLLTVGTAGKRFALPNARIMMHQPSAGI 133

Query: 145 SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            G A+DI   A+++   KR +  +  ++ G++  E+ +  DRD   +A +A ++G+VD+V
Sbjct: 134 GGSAADIAIQAENLEFTKRAIERLTAEHTGRSEAEISRDSDRDRWFTAEQAKEYGMVDRV 193

Query: 205 LMSRIDIEE 213
           + +  D+  
Sbjct: 194 VHTLDDVRP 202


>gi|54023301|ref|YP_117543.1| ATP-dependent Clp protease proteolytic subunit [Nocardia farcinica
           IFM 10152]
 gi|67460458|sp|Q5Z062|CLPP3_NOCFA RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
           AltName: Full=Endopeptidase Clp 3
 gi|54014809|dbj|BAD56179.1| putative Clp protease proteolytic subunit [Nocardia farcinica IFM
           10152]
          Length = 221

 Score =  221 bits (563), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 85/208 (40%), Positives = 136/208 (65%), Gaps = 4/208 (1%)

Query: 4   EGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQL 63
            G A    +  +  ++P  +E ++ G +  + Y++L +ERI+F+  Q++D  A  I AQL
Sbjct: 11  SGIAPSSPQARY--ILPSFIEHSSFGVKESNPYNKLFEERIIFLGVQVDDASANDIMAQL 68

Query: 64  LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           L LE+ +P ++I++YINSPGG  T+ MAIYDTMQ+++  ++T C+GQAAS  ++LL+AG 
Sbjct: 69  LVLESLDPDRDITMYINSPGGSFTSLMAIYDTMQYVRADVATVCLGQAASAAAVLLAAGT 128

Query: 124 KGMRFALPNARILLHQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVE 181
            G R  LPNAR+L+HQPS  GG  GQ SD+E  A +I +++R +     ++ GK  + + 
Sbjct: 129 PGKRACLPNARVLIHQPSLEGGIQGQVSDLEIQAAEIERMRRLMETTLARHTGKDPDTIR 188

Query: 182 KTLDRDHIMSASEACDWGVVDKVLMSRI 209
           K  DRD I++A +A ++G++D V   R 
Sbjct: 189 KDTDRDKILTAEDAKEYGIIDTVFDYRK 216


>gi|302549126|ref|ZP_07301468.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           viridochromogenes DSM 40736]
 gi|302466744|gb|EFL29837.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           viridochromogenes DSM 40736]
          Length = 219

 Score =  221 bits (563), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 89/210 (42%), Positives = 126/210 (60%), Gaps = 1/210 (0%)

Query: 8   KKDSEDVFLGLVPMVVEQTNRGERSYD-IYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
           + +       L P   E      R  D + ++LL +RIV +  Q+++  A  +CAQLL L
Sbjct: 4   RGEPMTPLTTLTPRAEEGDTPPTRFDDHLAAQLLAQRIVLLGTQVDEVSANRVCAQLLIL 63

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
            AE+P+ +ISLYINSPGG V AG+AIYDTMQ I   +ST  MG AASMG  LL  G  G 
Sbjct: 64  SAEDPRTDISLYINSPGGSVHAGLAIYDTMQLIPNDVSTLAMGFAASMGQFLLCVGAPGK 123

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           R+ALPNARI++HQ S G  G  +DIE  A+++   KR +  +  ++ G   + + +  DR
Sbjct: 124 RYALPNARIMMHQGSAGIGGTTADIEIQAENLEHTKRTMERLIAEHTGHCAQTISRDGDR 183

Query: 187 DHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           D   +A EA D+G+VD+V+ S  DI   ++
Sbjct: 184 DRWFTAEEARDYGIVDQVVESLADIRPTAQ 213


>gi|310287698|ref|YP_003938956.1| ATP-dependent Clp protease proteolytic subunit 2 [Bifidobacterium
           bifidum S17]
 gi|309251634|gb|ADO53382.1| ATP-dependent Clp protease proteolytic subunit 2 [Bifidobacterium
           bifidum S17]
          Length = 239

 Score =  221 bits (563), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 86/206 (41%), Positives = 140/206 (67%), Gaps = 3/206 (1%)

Query: 4   EGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQL 63
            G A    ++ +  ++P   E+T  G ++ D Y++L ++RI+F+  Q++D  A  I AQL
Sbjct: 35  RGAAAVSPQNRY--VLPQFSEKTPYGMKTQDPYTKLFEDRIIFMGVQVDDTSADDIMAQL 92

Query: 64  LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           L LE+++P +++ +YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL+AG 
Sbjct: 93  LVLESQDPSRDVMMYINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLAAGA 152

Query: 124 KGMRFALPNARILLHQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
           KG R  LPNAR+L+HQP+     G+A++IE  A+++++++  L     K+ G+  E++ K
Sbjct: 153 KGKRLMLPNARVLIHQPAIDQGFGKATEIEIQAKEMLRMREWLENTLAKHTGQDVEKIRK 212

Query: 183 TLDRDHIMSASEACDWGVVDKVLMSR 208
            ++ D  ++A EA D+G+VD+VL  R
Sbjct: 213 DIEVDTFLTAQEAKDYGIVDEVLEHR 238


>gi|224283328|ref|ZP_03646650.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           bifidum NCIMB 41171]
 gi|313140480|ref|ZP_07802673.1| ATP-dependent Clp protease proteolytic subunit 1 [Bifidobacterium
           bifidum NCIMB 41171]
 gi|313132990|gb|EFR50607.1| ATP-dependent Clp protease proteolytic subunit 1 [Bifidobacterium
           bifidum NCIMB 41171]
          Length = 239

 Score =  221 bits (563), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 86/206 (41%), Positives = 140/206 (67%), Gaps = 3/206 (1%)

Query: 4   EGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQL 63
            G A    ++ +  ++P   E+T  G ++ D Y++L ++RI+F+  Q++D  A  I AQL
Sbjct: 35  RGAAAVSPQNRY--VLPQFSEKTPYGMKTQDPYTKLFEDRIIFMGVQVDDTSADDIMAQL 92

Query: 64  LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           L LE+++P +++ +YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL+AG 
Sbjct: 93  LVLESQDPSRDVMMYINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLAAGA 152

Query: 124 KGMRFALPNARILLHQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
           KG R  LPNAR+L+HQP+     G+A++IE  A+++++++  L     K+ G+  E++ K
Sbjct: 153 KGKRLMLPNARVLIHQPAIDQGFGKATEIEIQAKEMLRMREWLENTLAKHTGQDVEKIRK 212

Query: 183 TLDRDHIMSASEACDWGVVDKVLMSR 208
            ++ D  ++A EA D+G+VD+VL  R
Sbjct: 213 DIEVDTFLTAQEAKDYGIVDEVLEHR 238


>gi|154509333|ref|ZP_02044975.1| hypothetical protein ACTODO_01858 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798967|gb|EDN81387.1| hypothetical protein ACTODO_01858 [Actinomyces odontolyticus ATCC
           17982]
          Length = 214

 Score =  221 bits (563), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 93/211 (44%), Positives = 142/211 (67%), Gaps = 3/211 (1%)

Query: 2   SFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICA 61
            FE  A++  +  +  ++P   E+T  G R  + Y++L ++RIVF+  Q++D  A  + A
Sbjct: 6   YFEAVARQMPQARY--VLPDFEERTAYGFRRQNPYTKLFEDRIVFLGVQVDDASADDVMA 63

Query: 62  QLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSA 121
           QLL LE+++P   I++YINSPGG  TA  AIYDTMQ+IKP I T C+GQAAS  ++LL+A
Sbjct: 64  QLLVLESQDPDSLITMYINSPGGSFTALTAIYDTMQYIKPQIQTVCLGQAASAAAVLLAA 123

Query: 122 GEKGMRFALPNARILLHQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           G  G R ALPNAR+L+HQP+     GQASDI+  A +I +++  L +   K+ GK  E+V
Sbjct: 124 GSPGKRLALPNARVLIHQPAMEGMQGQASDIQIVADEIDRMRAWLEDTISKHSGKPVEQV 183

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
            + ++RD I++A +A ++G++D+VL SR  +
Sbjct: 184 RRDIERDKILTAPQAAEYGLIDQVLESRKAL 214


>gi|257055263|ref|YP_003133095.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Saccharomonospora viridis DSM 43017]
 gi|256585135|gb|ACU96268.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Saccharomonospora viridis DSM 43017]
          Length = 209

 Score =  221 bits (563), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 86/193 (44%), Positives = 132/193 (68%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T+ G +  + Y++L +ER + +  Q++D  A  + AQLL LE E+P ++I+L
Sbjct: 12  ILPSYVERTSYGVKESNPYNKLYEERQIMLGVQVDDASANDVMAQLLHLEHEDPDRDITL 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA MAIYDTMQ+++P I T C+GQAAS  ++LL+AG KG R ALPN+R+L+
Sbjct: 72  YINSPGGSFTAMMAIYDTMQYVRPDIQTVCLGQAASAAAVLLAAGTKGKRLALPNSRVLI 131

Query: 138 HQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+     GQ SD+E  A +I +++R +     K+  K+ +EV   ++RD I++  EA 
Sbjct: 132 HQPATEGAYGQVSDLEIQAAEIQRVRRLMETTLAKHTNKSADEVRVDIERDKILTPEEAK 191

Query: 197 DWGVVDKVLMSRI 209
           ++G++D VL  R 
Sbjct: 192 EYGIIDHVLEYRK 204


>gi|297160513|gb|ADI10225.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           bingchenggensis BCW-1]
          Length = 223

 Score =  221 bits (563), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 91/193 (47%), Positives = 136/193 (70%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP  VE+T++G R YD Y++L +ER++F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 25  VVPRFVERTSQGIREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISI 84

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQF+KP I T CMGQAAS  ++LLSAG  G R ALPNAR+L+
Sbjct: 85  YINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLSAGTPGKRMALPNARVLI 144

Query: 138 HQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP      GQ SD+E  A +I++++ +L E+  K+     E++   ++RD I++A E+ 
Sbjct: 145 HQPYSETGRGQVSDLEIAANEILRMRSQLEEMLAKHSTTPIEKIRDDIERDKILTAEESL 204

Query: 197 DWGVVDKVLMSRI 209
            +G++D+++ +R 
Sbjct: 205 SYGLIDQIVSTRK 217


>gi|297626027|ref|YP_003687790.1| ATP-dependent Clp protease proteolytic subunit 2 (Endopeptidase Clp
           2) [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296921792|emb|CBL56352.1| ATP-dependent Clp protease proteolytic subunit 2 (Endopeptidase Clp
           2) [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 229

 Score =  221 bits (563), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 83/195 (42%), Positives = 131/195 (67%), Gaps = 3/195 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P   E+T+ G R  D Y++L ++RI+F+   I D +A  + AQLL L++ +  + IS+Y
Sbjct: 34  IPQWEERTSYGVRRVDPYTKLFEDRIIFLGAPITDDVANAVMAQLLSLQSMDVDRPISIY 93

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TA  AIYDTMQ++KP + T C+GQAAS  ++LL+AG KG R ALPN+RIL+H
Sbjct: 94  INSPGGSFTALTAIYDTMQYLKPAVQTICLGQAASAAAVLLAAGAKGQRLALPNSRILIH 153

Query: 139 QPSGG---FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           QP+       GQ+SD+E  A++I++I+  + ++     G+  E + + ++RD  ++A EA
Sbjct: 154 QPAISGEGSYGQSSDLEIQAKEILRIRSLMEQMLADATGQPVERINRDVERDKYLTAEEA 213

Query: 196 CDWGVVDKVLMSRID 210
            ++G++D +L S  D
Sbjct: 214 KEYGLIDDILTSLKD 228


>gi|269795807|ref|YP_003315262.1| ATP-dependent Clp protease proteolytic subunit ClpP [Sanguibacter
           keddieii DSM 10542]
 gi|269097992|gb|ACZ22428.1| ATP-dependent Clp protease proteolytic subunit ClpP [Sanguibacter
           keddieii DSM 10542]
          Length = 204

 Score =  221 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 86/192 (44%), Positives = 131/192 (68%), Gaps = 1/192 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+E+T  GER+ D+YSRLL +RIVF+  +I+D +A ++ AQL+ LE+  P + I LY
Sbjct: 7   IPSVIEKTTTGERAADVYSRLLTDRIVFLGTEIDDGVANVVVAQLIHLESVAPDQGIELY 66

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG V+A +AIYDT+Q+++ P+ T C+GQAAS  ++LL+AGE G R  LP+AR+LLH
Sbjct: 67  INSPGGSVSAMLAIYDTIQYLRAPVGTVCVGQAASSAAVLLAAGEPGRRGILPHARVLLH 126

Query: 139 QPSGGFSGQA-SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
            PS      A  D+E  A++I +++  ++EI   + G+    +     RD I +A +A  
Sbjct: 127 PPSTSSGRGALPDLEIQAKEIQRVRDEVDEILAAHTGQDQAVLRADTSRDRIFTAQQAVA 186

Query: 198 WGVVDKVLMSRI 209
           +G+VD+V+ SR 
Sbjct: 187 YGLVDEVVASRK 198


>gi|220912906|ref|YP_002488215.1| ATP-dependent Clp protease proteolytic subunit [Arthrobacter
           chlorophenolicus A6]
 gi|219859784|gb|ACL40126.1| Endopeptidase Clp [Arthrobacter chlorophenolicus A6]
          Length = 219

 Score =  221 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 92/194 (47%), Positives = 137/194 (70%), Gaps = 2/194 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++RI+F+  Q++D  A  I AQLL LE+ +P ++I+L
Sbjct: 18  VLPQFEERTPYGFKRQDPYTKLFEDRIIFLGVQVDDASADDIMAQLLVLESTDPDRDITL 77

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+I+P I T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 78  YINSPGGSFTAMTAIYDTMQYIRPEIQTVCLGQAASAAAVLLAAGTPGKRLALPNARVLI 137

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASD+E  A ++++++  L +    + G+T E+V   ++RD I++A+EA
Sbjct: 138 HQPALSGGQGGQASDLEIQAAEVMRMRSWLEDTLAHHSGRTSEQVNNDIERDKILTAAEA 197

Query: 196 CDWGVVDKVLMSRI 209
             +G++D+VL SR 
Sbjct: 198 QSYGLIDQVLDSRK 211


>gi|289771641|ref|ZP_06531019.1| Clp protease [Streptomyces lividans TK24]
 gi|289701840|gb|EFD69269.1| Clp protease [Streptomyces lividans TK24]
          Length = 224

 Score =  221 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 87/193 (45%), Positives = 137/193 (70%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T++G R YD Y++L +ER++F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 25  VIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISV 84

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ++KP + T CMGQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 85  YINSPGGSFTALTAIYDTMQYVKPDVQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLI 144

Query: 138 HQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP      GQ SD+E  A +I++++ +L E+  K+     E++ + ++RD I++A +A 
Sbjct: 145 HQPYSETGRGQVSDLEIAANEILRMRSQLEEMLAKHSTTPVEKIREDIERDKILTAEDAL 204

Query: 197 DWGVVDKVLMSRI 209
            +G++D+++ +R 
Sbjct: 205 SYGLIDQIITTRK 217


>gi|159039407|ref|YP_001538660.1| endopeptidase Clp [Salinispora arenicola CNS-205]
 gi|157918242|gb|ABV99669.1| Endopeptidase Clp [Salinispora arenicola CNS-205]
          Length = 220

 Score =  220 bits (562), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 89/194 (45%), Positives = 137/194 (70%), Gaps = 1/194 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T+ G +  + Y++L ++RI+F+  Q++D  A  + AQLL LE  +P ++I +
Sbjct: 18  VLPSFVERTSYGVKESNPYNKLFEDRIIFLGVQVDDASANDVMAQLLTLEGTDPDRDIIM 77

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+++P I T C+GQAAS  ++LLSAG  G R ALPN+RI++
Sbjct: 78  YINSPGGSFTAMTAIYDTMQYVRPDIQTVCLGQAASAAAVLLSAGTPGKRMALPNSRIII 137

Query: 138 HQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+     GQ SDIE  A++I++++ +L E+  ++C +  E+V K +DRD IM+A E+ 
Sbjct: 138 HQPATEGGYGQGSDIEIQAREILRMRTQLEEMLSRHCNQPVEKVRKDIDRDKIMTAEESR 197

Query: 197 DWGVVDKVLMSRID 210
           ++G+VD +L SR  
Sbjct: 198 EYGLVDTILTSRKK 211


>gi|145596010|ref|YP_001160307.1| endopeptidase Clp [Salinispora tropica CNB-440]
 gi|145305347|gb|ABP55929.1| Endopeptidase Clp [Salinispora tropica CNB-440]
          Length = 220

 Score =  220 bits (562), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 89/194 (45%), Positives = 137/194 (70%), Gaps = 1/194 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T+ G +  + Y++L ++RI+F+  Q++D  A  + AQLL LE  +P ++I +
Sbjct: 18  VLPSFVERTSYGVKESNPYNKLFEDRIIFLGVQVDDASANDVMAQLLTLEGTDPDRDIIM 77

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+++P I T C+GQAAS  ++LLSAG  G R ALPN+RI++
Sbjct: 78  YINSPGGSFTAMTAIYDTMQYVRPDIQTVCLGQAASAAAMLLSAGTPGKRMALPNSRIII 137

Query: 138 HQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+     GQ SDIE  A++I++++ +L E+  ++C +  E+V K +DRD IM+A E+ 
Sbjct: 138 HQPATEGGYGQGSDIEIQAREILRMRTQLEEMLSRHCNQPVEKVRKDIDRDKIMTAEESR 197

Query: 197 DWGVVDKVLMSRID 210
           ++G+VD +L SR  
Sbjct: 198 EYGLVDTILTSRKK 211


>gi|115436866|ref|NP_001043155.1| Os01g0507900 [Oryza sativa Japonica Group]
 gi|113532686|dbj|BAF05069.1| Os01g0507900 [Oryza sativa Japonica Group]
 gi|215734851|dbj|BAG95573.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 314

 Score =  220 bits (562), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 81/176 (46%), Positives = 120/176 (68%)

Query: 31  RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGM 90
              D  + LL++RIVF+   ++D  A LI +QLL L+AE+  K+I L+INSPGG +TAGM
Sbjct: 74  EELDTTNMLLRQRIVFLGSPVDDMSADLIISQLLLLDAEDKTKDIKLFINSPGGSITAGM 133

Query: 91  AIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASD 150
            +YD M+F K  IST C G AASMG+ LL+AG KG RF +PNARI++HQPSGG  G+ ++
Sbjct: 134 GVYDAMKFCKADISTVCFGLAASMGAFLLAAGTKGKRFCMPNARIMIHQPSGGAGGKVTE 193

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           +    ++++  K ++N+I  +  GK  E++++    D+ MS  EA D+G+VD V+ 
Sbjct: 194 MGLQIREMMYEKIKINKILSRITGKPEEQIDEDTKFDYFMSPWEAKDYGIVDSVID 249


>gi|224178037|ref|YP_002600892.1| proteolytic subunit 2 of clp protease [Pyramimonas parkeae]
 gi|215882704|gb|ACJ71077.1| proteolytic subunit 2 of clp protease [Pyramimonas parkeae]
          Length = 198

 Score =  220 bits (562), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 76/193 (39%), Positives = 126/193 (65%), Gaps = 2/193 (1%)

Query: 19  VPMVVEQTNR--GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +       +  D+Y+RL +ER++F+   ++D +A  +   +L+L AE+  K + 
Sbjct: 5   VPKVAYRLPGEPAPQWIDLYNRLYRERVLFLGSDLDDELANQLVGIMLYLSAEDESKRLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VT G+A+YD MQ +   ++T C+G AASM S +L+ GE+G R AL +ARI+
Sbjct: 65  IYINSPGGSVTCGIAVYDAMQHVNASVTTICVGIAASMASFVLAGGERGHRLALSHARIM 124

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQAS++   A+++++I+R++ +IY +  G+    + + +DRD  MS  EA 
Sbjct: 125 IHQPQGGSQGQASEVTAEAEEVMRIRRQVGQIYAERTGQRLTTIARDMDRDRFMSGREAK 184

Query: 197 DWGVVDKVLMSRI 209
           ++G+VD+V   + 
Sbjct: 185 EYGLVDQVAQQKA 197


>gi|227833713|ref|YP_002835420.1| ATP-dependent Clp protease proteolytic subunit 2 [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262184720|ref|ZP_06044141.1| ATP-dependent Clp protease proteolytic subunit 2 [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454729|gb|ACP33482.1| ATP-dependent Clp protease proteolytic subunit 2 [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 207

 Score =  220 bits (562), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 87/193 (45%), Positives = 134/193 (69%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +EQ  +G ++ + YS+L +ERI+F+  Q++D  A  I AQLL LE+++P ++I++
Sbjct: 12  VLPEFIEQNAQGSKTTNPYSKLFEERIIFLGTQVDDTSANDIMAQLLVLESQDPDRDITM 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA MAIYDTM++++P + T C+GQAAS  ++LL+AG  G R ALPN+R+L+
Sbjct: 72  YINSPGGSFTALMAIYDTMRYVRPDVQTVCLGQAASAAAVLLAAGAPGKRAALPNSRVLI 131

Query: 138 HQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP      GQ SD+E  A +I +++R + E   ++ G+T E+V    DRD I++A EA 
Sbjct: 132 HQPRTQGTQGQVSDLEIEANEIERMRRLMEETLAEHTGRTAEQVRIDTDRDKILTAQEAV 191

Query: 197 DWGVVDKVLMSRI 209
           D+G++D V   R 
Sbjct: 192 DYGLIDTVFDYRK 204


>gi|317508501|ref|ZP_07966168.1| Clp protease [Segniliparus rugosus ATCC BAA-974]
 gi|316253192|gb|EFV12595.1| Clp protease [Segniliparus rugosus ATCC BAA-974]
          Length = 210

 Score =  220 bits (562), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 89/200 (44%), Positives = 133/200 (66%), Gaps = 3/200 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP  +E T+ G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE+ +P ++I++
Sbjct: 11  IVPSFIEHTSTGVKETNPYTKLFEERIIFLGTQVDDTSANDIMAQLLVLESLDPDRDITM 70

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQF+   I+T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 71  YINSPGGSFTSLMAIYDTMQFVHCDIATVCLGQAASAAAVLLAAGTPGKRAALPNARVLI 130

Query: 138 HQPS---GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           HQP    G   GQA+D+E  A +I +++R +      + GK+ +EV K  DRD I++A E
Sbjct: 131 HQPRIDGGAIRGQATDLEIQAAEIERMRRLMETTLATHTGKSADEVRKDTDRDKILTAEE 190

Query: 195 ACDWGVVDKVLMSRIDIEEK 214
           A ++G++D V   R    + 
Sbjct: 191 AKEYGIIDTVYPYRKKSAKN 210


>gi|29831991|ref|NP_826625.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           avermitilis MA-4680]
 gi|67460533|sp|Q82CA5|CLPP4_STRAW RecName: Full=ATP-dependent Clp protease proteolytic subunit 4;
           AltName: Full=Endopeptidase Clp 4
 gi|29609109|dbj|BAC73160.1| putative ATP-dependent Clp protease proteolytic subunit 2
           [Streptomyces avermitilis MA-4680]
          Length = 226

 Score =  220 bits (562), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 88/193 (45%), Positives = 137/193 (70%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T++G R YD Y++L +ER++F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 27  VIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISV 86

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQF+KP I T CMGQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 87  YINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNARVLI 146

Query: 138 HQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP      GQ SD+E  A +I++++ +L ++  K+     E++ + ++RD I++A +A 
Sbjct: 147 HQPYSETGRGQVSDLEIAANEILRMRSQLEDMLAKHSTTPIEKIREDIERDKILTAEDAL 206

Query: 197 DWGVVDKVLMSRI 209
            +G++D+++ +R 
Sbjct: 207 AYGLIDQIISTRK 219


>gi|258652074|ref|YP_003201230.1| endopeptidase Clp [Nakamurella multipartita DSM 44233]
 gi|258555299|gb|ACV78241.1| Endopeptidase Clp [Nakamurella multipartita DSM 44233]
          Length = 220

 Score =  220 bits (562), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 94/193 (48%), Positives = 137/193 (70%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T+ G +  + Y++L +ERI+F+  QI+D  A  + AQLL LE+ +P +EI +
Sbjct: 26  ILPSFVERTSYGVKESNPYNKLFEERIIFLGVQIDDASANDVMAQLLTLESTDPDREIIM 85

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+  AIYDTMQF++P I T C+GQAAS  ++LL+AG  G R ALPN+RIL+
Sbjct: 86  YINSPGGSFTSMTAIYDTMQFVRPHIQTVCLGQAASAAAVLLAAGSPGRRLALPNSRILI 145

Query: 138 HQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+     GQ SD+E  A++I +++  L EI  ++  KT EEV K +DRD I++A+EA 
Sbjct: 146 HQPATEGVYGQVSDLEIQAKEIGRMRAALEEILSRHSTKTPEEVRKDIDRDKILTAAEAK 205

Query: 197 DWGVVDKVLMSRI 209
           D+G++D+VL  R 
Sbjct: 206 DYGLIDEVLQYRK 218


>gi|290489440|gb|ADD31104.1| clp protease proteolytic subunit protein [Ilex cornuta]
          Length = 196

 Score =  220 bits (561), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 74/189 (39%), Positives = 120/189 (63%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     D+Y+RL +ER++F+  +++  ++  +   +++L  E+  K++ 
Sbjct: 5   VPKVPFRSPGEEDASWVDVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYDTMQF++P + T CMG AASMGS +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGVAIYDTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  L  +YV+  GK    V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQTGEFILEAEELLKLRETLTRVYVQRTGKPLWVVSEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
             +G+VD V
Sbjct: 185 QAYGIVDLV 193


>gi|258655305|ref|YP_003204461.1| endopeptidase Clp [Nakamurella multipartita DSM 44233]
 gi|258558530|gb|ACV81472.1| Endopeptidase Clp [Nakamurella multipartita DSM 44233]
          Length = 211

 Score =  220 bits (561), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 84/187 (44%), Positives = 123/187 (65%)

Query: 29  GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTA 88
           G     +  RLL +RIV +  Q++D +A  ICAQLL L AE+P+ +ISLYINSPGG V+A
Sbjct: 14  GGFDDQLAGRLLHQRIVVLGQQVDDPIANRICAQLLLLSAEDPRADISLYINSPGGSVSA 73

Query: 89  GMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQA 148
           G+AI+DTM+ I   +ST  MG AASMG  LL+AG  G RFALP++RIL+HQ S G  G A
Sbjct: 74  GLAIFDTMRLIPNDVSTLAMGLAASMGQFLLTAGTPGKRFALPHSRILMHQGSAGIRGTA 133

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
            D++  A+++  +K  ++ +  ++ G+    +E+  DRD   +A +A ++G+VD VL S 
Sbjct: 134 VDVQIQAENLEYVKALMHRLTAEHSGQDVATIERDSDRDRWFTADQAVEYGLVDAVLAST 193

Query: 209 IDIEEKS 215
            D+   +
Sbjct: 194 SDVRPAA 200


>gi|54023139|ref|YP_117381.1| putative Clp protease proteolytic subunit [Nocardia farcinica IFM
           10152]
 gi|67460460|sp|Q5Z0M4|CLPP1_NOCFA RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|54014647|dbj|BAD56017.1| putative Clp protease proteolytic subunit [Nocardia farcinica IFM
           10152]
          Length = 197

 Score =  220 bits (561), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 78/191 (40%), Positives = 125/191 (65%), Gaps = 1/191 (0%)

Query: 19  VPMVVEQTNRG-ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +P V+ Q  RG ER  DIYS LL ERIV++   I+  +A  + AQLL LE+E+P +EI+ 
Sbjct: 6   IPNVIAQHPRGGERITDIYSHLLAERIVYLGTPIDSGVANALIAQLLHLESESPDQEINF 65

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YIN  GG + + +A+YDTMQ I  P+ T C+GQA ++G++LL+ G  G R  LP+AR++L
Sbjct: 66  YINCEGGDLPSMLAVYDTMQHIGAPVHTTCVGQAIAVGAVLLAGGAPGQRAMLPHARVVL 125

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP+    G   D+   A ++V+++  +  I  ++ G++ E++ +  DRD + +A+ A +
Sbjct: 126 HQPAARGQGPIPDLILQADELVRMRSEIEAILSRHTGRSPEQLREDTDRDRVFTATAALE 185

Query: 198 WGVVDKVLMSR 208
           +G++D VL  R
Sbjct: 186 YGLIDTVLSPR 196


>gi|300934279|ref|ZP_07149535.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           resistens DSM 45100]
          Length = 206

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 84/193 (43%), Positives = 134/193 (69%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE ++ G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE  +P ++I++
Sbjct: 9   ILPSFVEHSSYGAKESNPYNKLFEERIIFLGTQVDDASANDIMAQLLVLEGLDPDRDITM 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++P + T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 69  YINSPGGSFTSLMAIYDTMQYVRPDVQTVCLGQAASAAAVLLAAGTPGKRAALPNARVLI 128

Query: 138 HQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+ GG  GQ SD+E  A++I +++  +     ++ G++ E++    DRD I++A EA 
Sbjct: 129 HQPATGGVQGQVSDLEIQAKEIERMRTLMETTLARHTGRSAEQIRIDTDRDKILTAEEAK 188

Query: 197 DWGVVDKVLMSRI 209
           ++G++D+V   R 
Sbjct: 189 EYGIIDQVFEYRK 201


>gi|11465983|ref|NP_054525.1| ATP-dependent Clp protease proteolytic subunit [Nicotiana tabacum]
 gi|78102563|ref|YP_358703.1| ATP-dependent Clp protease proteolytic subunit [Nicotiana
           sylvestris]
 gi|81301593|ref|YP_398889.1| ATP-dependent Clp protease proteolytic subunit [Nicotiana
           tomentosiformis]
 gi|116527|sp|P12210|CLPP_TOBAC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|122212889|sp|Q33C07|CLPP_NICTO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|122213564|sp|Q3C1K4|CLPP_NICSY RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|1143166|gb|AAA84867.1| ClpP protease [Nicotiana tabacum]
 gi|2924270|emb|CAA77422.1| ATP-dependent protease proteolytic subuni [Nicotiana tabacum]
 gi|77799590|dbj|BAE46679.1| ATP-dependent protease proteolytic subunit [Nicotiana sylvestris]
 gi|80750952|dbj|BAE48028.1| ATP-dependent protease proteolytic subunit [Nicotiana
           tomentosiformis]
          Length = 196

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 74/189 (39%), Positives = 120/189 (63%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     D+Y+RL +ER++F+  +++  ++  +   +++L  E+  K++ 
Sbjct: 5   VPKVPFRSPGEEDASWVDVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDETKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYDTMQF++P + T CMG AASMGS +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGVAIYDTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  L  +YV+  GK    V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQTGEFVLEAEELLKLRETLTRVYVQRTGKPLWVVSEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
             +G+VD V
Sbjct: 185 QAYGIVDLV 193


>gi|311064596|ref|YP_003971321.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           bifidum PRL2010]
 gi|310866915|gb|ADP36284.1| ClpP2 ATP-dependent Clp protease proteolytic subunit
           [Bifidobacterium bifidum PRL2010]
          Length = 239

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 86/206 (41%), Positives = 140/206 (67%), Gaps = 3/206 (1%)

Query: 4   EGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQL 63
            G A    ++ +  ++P   E+T  G ++ D Y++L ++RI+F+  Q++D  A  I AQL
Sbjct: 35  RGGAAVSPQNRY--VLPQFSEKTPYGMKTQDPYTKLFEDRIIFMGVQVDDTSADDIMAQL 92

Query: 64  LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           L LE+++P +++ +YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL+AG 
Sbjct: 93  LVLESQDPSRDVMMYINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLAAGA 152

Query: 124 KGMRFALPNARILLHQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
           KG R  LPNAR+L+HQP+     G+A++IE  A+++++++  L     K+ G+  E++ K
Sbjct: 153 KGKRLMLPNARVLIHQPAIDQGFGKATEIEIQAKEMLRMREWLENTLAKHTGQDVEKIRK 212

Query: 183 TLDRDHIMSASEACDWGVVDKVLMSR 208
            ++ D  ++A EA D+G+VD+VL  R
Sbjct: 213 DIEVDTFLTAQEAKDYGIVDEVLEHR 238


>gi|3834445|gb|AAC70947.1| ATP-dependent Clp protease proteolytic subunit 1 [Streptomyces
           coelicolor A3(2)]
          Length = 218

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 95/206 (46%), Positives = 133/206 (64%), Gaps = 3/206 (1%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYD-IYSRLLKERIVFVTGQIEDHMATLI 59
           M   G   + +      L+P    + + G    D +Y+RLL ERI+F+   ++D +A  I
Sbjct: 1   MRRPGAVVRRAGGYVTNLMPSAAGEPSIGGGLGDQVYNRLLGERIIFLGQPVDDDIANKI 60

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
            AQLL L ++ P K+I LYINSPGG +TAGMAIYDTMQ+IK  + T  MG AASMG  LL
Sbjct: 61  TAQLLLLASD-PDKDIFLYINSPGGSITAGMAIYDTMQYIKNDVVTIAMGLAASMGQFLL 119

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
           SAG    +FALPNA IL+HQPS G +G ASDI+ HA+ ++  KRR+ E+  ++ G+T E+
Sbjct: 120 SAGTP-RQFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKRRMAELTSQHTGQTIEQ 178

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVL 205
           + +  DRD    A EA ++G++D V+
Sbjct: 179 ITRDSDRDRWFDAFEAKEYGLIDDVI 204


>gi|290960371|ref|YP_003491553.1| ATP dependent Clp protease proteolytic subunit 2 [Streptomyces
           scabiei 87.22]
 gi|260649897|emb|CBG73013.1| ATP dependent Clp protease proteolytic subunit 2 [Streptomyces
           scabiei 87.22]
          Length = 226

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 90/210 (42%), Positives = 142/210 (67%), Gaps = 3/210 (1%)

Query: 3   FEGCAKKDSEDVFLG--LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           ++G   + S        ++P  VE+T++G R YD Y++L +ER++F+  QI+D  A  + 
Sbjct: 10  YDGARSQYSGPTAESRYVIPRFVERTSQGIREYDPYAKLFEERVIFLGVQIDDASANDVM 69

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLL LE+ +P ++IS+YINSPGG  TA  AIYDTMQF+KP I T CMGQAAS  ++LL+
Sbjct: 70  AQLLCLESMDPDRDISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLA 129

Query: 121 AGEKGMRFALPNARILLHQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
           AG  G R ALPNAR+L+HQP      GQ SD+E  A +I++++ +L ++  K+     E+
Sbjct: 130 AGTPGKRMALPNARVLIHQPYSETGRGQVSDLEIAANEILRMRGQLEDMLAKHSTTPIEK 189

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           + + ++RD I++A +A  +G++D+++ +R 
Sbjct: 190 IREDIERDKILTAEDALSYGLIDQIISTRK 219


>gi|119025606|ref|YP_909451.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118765190|dbj|BAF39369.1| ATP-dependent Clp protease proteolytic subunit 1 [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 233

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 84/192 (43%), Positives = 134/192 (69%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y+RL ++RI+F+  Q++D  A  I AQLL LE+++P +++ +
Sbjct: 41  VLPQFEEKTPYGYKRQDPYTRLFEDRIIFMGVQVDDTSADDIMAQLLVLESQDPNRDVMM 100

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL+AG KG R  LPNAR+L+
Sbjct: 101 YINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLAAGAKGKRLMLPNARVLI 160

Query: 138 HQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+     G+A++IE  A+++++++  L     K+ G+  E++ K ++ D  ++A EA 
Sbjct: 161 HQPAIDQGFGKATEIEIQAKEMLRMREWLENTLAKHTGRDIEKIRKDIEVDTFLTAQEAK 220

Query: 197 DWGVVDKVLMSR 208
           ++G+VD+VL  R
Sbjct: 221 EYGIVDEVLEHR 232


>gi|110456628|gb|ABG74755.1| ATP-dependent protease catalytic subunit [Forsythia europaea]
 gi|290489438|gb|ADD31103.1| clp protease proteolytic subunit protein [Ehretia acuminata]
          Length = 196

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 74/189 (39%), Positives = 120/189 (63%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     D+Y+RL +ER++F+  +++  ++  +   +++L  E+  K++ 
Sbjct: 5   VPKVPFRSPGEEDASWVDVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYDTMQF++P + T CMG AASMGS +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGVAIYDTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  L  +YV+  GK    V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQTGEFILEAEELLKLRETLTRVYVQRTGKPLWVVSEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
             +G+VD V
Sbjct: 185 QAYGIVDLV 193


>gi|239931288|ref|ZP_04688241.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           ghanaensis ATCC 14672]
 gi|291439661|ref|ZP_06579051.1| ATP-dependent Clp protease proteolytic subunit 4 [Streptomyces
           ghanaensis ATCC 14672]
 gi|291342556|gb|EFE69512.1| ATP-dependent Clp protease proteolytic subunit 4 [Streptomyces
           ghanaensis ATCC 14672]
          Length = 226

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 87/193 (45%), Positives = 138/193 (71%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T++G R YD Y++L +ER++F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 27  VIPRFVERTSQGIREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISV 86

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ++KP I T CMGQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 87  YINSPGGSFTALTAIYDTMQYVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLI 146

Query: 138 HQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP      GQ SD+E  A +I++++ +L E+  K+  +  +++ + ++RD I++A +A 
Sbjct: 147 HQPYSETGRGQVSDLEIAANEILRMRTQLEEMLAKHSTRPIDKIREDIERDKILTAEDAL 206

Query: 197 DWGVVDKVLMSRI 209
            +G++D+++ +R 
Sbjct: 207 QYGLIDQIITTRK 219


>gi|256396400|ref|YP_003117964.1| ATP-dependent Clp protease proteolytic subunit [Catenulispora
           acidiphila DSM 44928]
 gi|256362626|gb|ACU76123.1| Endopeptidase Clp [Catenulispora acidiphila DSM 44928]
          Length = 214

 Score =  220 bits (560), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 96/206 (46%), Positives = 136/206 (66%), Gaps = 1/206 (0%)

Query: 6   CAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF 65
              +  E     +VP   E+T+ G R +D YS+L  ERI+F+  QI+D  A  + AQL+ 
Sbjct: 4   MQYRGPEHDARYIVPKFSERTSYGFREWDPYSKLFDERIIFLGVQIDDASANDVMAQLIT 63

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           LE+ +P ++IS+YINSPGG  TA  AIYDTM ++KP I T CMGQAAS  ++LL+AG  G
Sbjct: 64  LESMDPDRDISIYINSPGGSFTALTAIYDTMMWVKPDIQTVCMGQAASAAAVLLAAGTPG 123

Query: 126 MRFALPNARILLHQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
            R ALPNARIL+HQP      G  SD+E  A +I++++  + ++  K+ G+  E V K +
Sbjct: 124 KRLALPNARILIHQPWSEGGRGDLSDLEIQANEILRMRTVMEQMLSKHSGREPELVHKDI 183

Query: 185 DRDHIMSASEACDWGVVDKVLMSRID 210
           DRD I+SA EA D+G++D+VL SR +
Sbjct: 184 DRDKILSADEAKDYGIIDQVLTSRTE 209


>gi|320010821|gb|ADW05671.1| Endopeptidase Clp [Streptomyces flavogriseus ATCC 33331]
          Length = 222

 Score =  220 bits (560), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 90/193 (46%), Positives = 137/193 (70%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP  VE+T++G R YD Y++L +ER++F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 23  VVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISI 82

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQF+KP I T CMGQAAS  ++LL+AG  G R ALP+AR+L+
Sbjct: 83  YINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPHARVLI 142

Query: 138 HQPSGGFSG-QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQPS      Q SD+E  A +I++++ +L E+  K+     E++ + ++RD I++A +A 
Sbjct: 143 HQPSSQTGREQLSDLEIAANEILRMRTQLEEMLAKHSTTPLEKISEDIERDKILTADDAL 202

Query: 197 DWGVVDKVLMSRI 209
            +G+VD+++ +R 
Sbjct: 203 AYGLVDQIVSTRK 215


>gi|116617132|ref|YP_817507.1| clp protease proteolytic subunit [Coffea arabica]
 gi|122153644|sp|A0A360|CLPP_COFAR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|116242188|gb|ABJ89703.1| clp protease proteolytic subunit [Coffea arabica]
          Length = 196

 Score =  220 bits (560), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 75/189 (39%), Positives = 120/189 (63%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     D+Y+RL +ER++F+   ++  ++  +   +++L  E+  K++ 
Sbjct: 5   VPKVPFRSPGEEDASWVDVYNRLYRERLLFLGQAVDSEISNQLIGLMIYLSIEDDTKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYDTMQF++P + T CMG AASMGS +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGVAIYDTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  QA +    A++++K++  L  +YV+  GK    V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQAGEFILEAEELLKLRETLTRVYVQRTGKPLWVVSEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
             +G+VD V
Sbjct: 185 QAYGIVDLV 193


>gi|118473678|ref|YP_888935.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           smegmatis str. MC2 155]
 gi|118174965|gb|ABK75861.1| Clp protease [Mycobacterium smegmatis str. MC2 155]
          Length = 218

 Score =  220 bits (560), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 85/194 (43%), Positives = 131/194 (67%), Gaps = 2/194 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +E ++ G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE+ +P ++I++
Sbjct: 19  ILPSFIEHSSFGVKESNPYNKLFEERIIFLGVQVDDASANDIMAQLLVLESLDPDRDITM 78

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++  I T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 79  YINSPGGSFTSLMAIYDTMQYVRADIQTVCLGQAASAAAVLLAAGTPGKRLALPNARVLI 138

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SG   GQ SD+E  A +I +++  +     ++ GK   ++ K  DRD I++A EA
Sbjct: 139 HQPALSGVIQGQFSDLEIQAAEIERMRTLMETTLARHTGKDPAQIRKDTDRDKILTAEEA 198

Query: 196 CDWGVVDKVLMSRI 209
            ++G++D VL  R 
Sbjct: 199 KEYGIIDTVLQYRK 212


>gi|313682639|ref|YP_004060377.1| ATP-dependent clp protease proteolytic subunit clpp [Sulfuricurvum
           kujiense DSM 16994]
 gi|313155499|gb|ADR34177.1| ATP-dependent Clp protease proteolytic subunit ClpP [Sulfuricurvum
           kujiense DSM 16994]
          Length = 198

 Score =  220 bits (560), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 91/192 (47%), Positives = 134/192 (69%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P V + + RGER +D++S+LL +R++ +T  I+DHM  +I +QLL+LEA +P + I
Sbjct: 1   MPFIPTVKDVSPRGERYFDLFSKLLGDRVIVITEAIDDHMMGVIVSQLLYLEAMDPDEPI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YI+SPGG V AG+AI DTM  I  P+ T+ MG  ASM ++L + GEKG R+ LPNA +
Sbjct: 61  HMYISSPGGSVMAGLAILDTMNLINAPVHTYAMGLVASMAAVLFTCGEKGHRYMLPNAEV 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQP GG+SGQASDIE H + I+ +KRRL  I  +  GK+ + +EK  DRD+ M A EA
Sbjct: 121 MIHQPLGGYSGQASDIEIHTKHILNLKRRLYVILAEATGKSAKVIEKESDRDNYMEAKEA 180

Query: 196 CDWGVVDKVLMS 207
             +G+ D++L  
Sbjct: 181 IAFGLADEILTK 192


>gi|320094139|ref|ZP_08025952.1| ATP-dependent Clp protease proteolytic subunit [Actinomyces sp.
           oral taxon 178 str. F0338]
 gi|319978941|gb|EFW10471.1| ATP-dependent Clp protease proteolytic subunit [Actinomyces sp.
           oral taxon 178 str. F0338]
          Length = 214

 Score =  220 bits (560), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 91/209 (43%), Positives = 140/209 (66%), Gaps = 3/209 (1%)

Query: 2   SFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICA 61
            FE  A++  +  +  ++P   E+T  G R  + Y++L ++RIVF+  Q++D  A  + A
Sbjct: 6   YFEAAARQMPQARY--VLPDFEERTAYGFRRQNPYTKLFEDRIVFLGVQVDDASADDVMA 63

Query: 62  QLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSA 121
           QLL LE+++P   I++YINSPGG  TA  AIYDTMQ+IKP I T C+GQAAS  ++LL+A
Sbjct: 64  QLLVLESQDPDSLITMYINSPGGSFTALTAIYDTMQYIKPQIQTVCLGQAASAAAVLLAA 123

Query: 122 GEKGMRFALPNARILLHQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           G  G R ALPNAR+L+HQP+     GQASDI+  A +I +++  L +   ++ G   E+V
Sbjct: 124 GSPGKRLALPNARVLIHQPAMEGMQGQASDIQIVADEIDRMRAWLEDTLAEHSGTPVEQV 183

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRI 209
            + ++RD I++A +A ++G++D+VL SR 
Sbjct: 184 RRDIERDKILTAPQAAEYGLIDQVLESRK 212


>gi|269956966|ref|YP_003326755.1| endopeptidase Clp [Xylanimonas cellulosilytica DSM 15894]
 gi|269305647|gb|ACZ31197.1| Endopeptidase Clp [Xylanimonas cellulosilytica DSM 15894]
          Length = 195

 Score =  220 bits (560), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 77/190 (40%), Positives = 127/190 (66%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+ Q  RGER+ D+YS+LL ERIV++   I+  +A  + AQLLFLE+ +P  +I LY
Sbjct: 6   IPTVIAQHARGERALDVYSQLLTERIVYLGTPIDAGVANALIAQLLFLESADPDADIQLY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           I+  GG   AG+AIYDT++++KP ++T  +G+A ++G++LL+AG  G R ALP+AR++LH
Sbjct: 66  IHCEGGDPGAGLAIYDTLRYVKPAVATTVVGEAVAVGAVLLAAGAPGKRAALPHARVVLH 125

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP+    G   D+   A ++++I+  L  +  ++ G+  E +    D D I++A +A D+
Sbjct: 126 QPAAQGRGAIPDLILQADEVLRIRSDLESVLARHTGQPVERLRADTDHDRILTAVQARDY 185

Query: 199 GVVDKVLMSR 208
           G++D V+  R
Sbjct: 186 GLIDHVIAER 195


>gi|291455391|ref|ZP_06594781.1| ATP-dependent Clp protease proteolytic subunit 1 [Streptomyces
           albus J1074]
 gi|291358340|gb|EFE85242.1| ATP-dependent Clp protease proteolytic subunit 1 [Streptomyces
           albus J1074]
          Length = 216

 Score =  220 bits (560), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 84/189 (44%), Positives = 123/189 (65%)

Query: 25  QTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG 84
           +T        +  +LL +RIV +  Q+++  A  +CAQLL L AE+P+ +ISLYINSPGG
Sbjct: 19  ETAPTRYDDQLAGQLLTQRIVLLGTQVDETSANRVCAQLLLLSAEDPRTDISLYINSPGG 78

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
            VTAG+AIYDTM+ I   +ST  MG AASMG  LL+ G  G RFALPNARI++HQPS G 
Sbjct: 79  SVTAGLAIYDTMRLIPNDVSTLAMGFAASMGQFLLTVGTAGKRFALPNARIMMHQPSAGI 138

Query: 145 SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            G A+DI   A+++   KR +  +  ++ G++  E+ +  DRD   +A +A ++G+VD+V
Sbjct: 139 GGSAADIAIQAENLEFTKRAIERLTAEHTGRSEAEISRDSDRDRWFTAEQAKEYGMVDRV 198

Query: 205 LMSRIDIEE 213
           + +  D+  
Sbjct: 199 VHTLDDVRP 207


>gi|297197433|ref|ZP_06914830.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sviceus ATCC 29083]
 gi|197716281|gb|EDY60315.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sviceus ATCC 29083]
          Length = 220

 Score =  220 bits (560), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 86/213 (40%), Positives = 126/213 (59%), Gaps = 2/213 (0%)

Query: 4   EGCAKKDSEDVFLGLVPMVVEQTNRGERSYD-IYSRLLKERIVFVTGQIEDHMATLICAQ 62
           E  A        +  +    E      R  D + ++LL +RIV +  Q+++  A  +C+Q
Sbjct: 2   EPTASLRPRGPPMTSI-RAEEGDTPPTRFDDQLAAQLLAQRIVLLGTQVDEVSANRVCSQ 60

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           LL L AE+P+ +ISLYINSPGG V AG+AIYDTM+ I   +ST  MG AASMG  LL  G
Sbjct: 61  LLVLSAEDPRTDISLYINSPGGSVYAGLAIYDTMRLIPNDVSTLAMGFAASMGQFLLCGG 120

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
             G R+ALPNARI++HQ S G  G  +DI   A+++   K+ +  +  +N G+T E + +
Sbjct: 121 TPGKRYALPNARIMMHQGSAGIGGTTADILIQAENLDHSKQTMERLLAENTGQTPETIAR 180

Query: 183 TLDRDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
             DRD   +A EA ++G+VD+V+ S  D+   +
Sbjct: 181 DGDRDRWFTAEEAREYGMVDRVVESLADVRPAA 213


>gi|307328455|ref|ZP_07607630.1| Endopeptidase Clp [Streptomyces violaceusniger Tu 4113]
 gi|306885867|gb|EFN16878.1| Endopeptidase Clp [Streptomyces violaceusniger Tu 4113]
          Length = 218

 Score =  220 bits (560), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 91/193 (47%), Positives = 136/193 (70%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP  VE+T++G R YD Y++L +ER++F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 20  VVPRFVERTSQGIREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISV 79

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTM+F+KP I T CMGQAAS  ++LL+AG  G R ALPNARIL+
Sbjct: 80  YINSPGGSFTALTAIYDTMEFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARILI 139

Query: 138 HQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP      GQ SD+E  A +I++++ +L E+  K+     E++   ++RD I++A E+ 
Sbjct: 140 HQPYSETGRGQVSDLEIAANEILRMRSQLEEMLAKHSTTPIEKIRDDIERDKILTAEESL 199

Query: 197 DWGVVDKVLMSRI 209
            +G+VD+++ +R 
Sbjct: 200 AYGLVDQIVSTRK 212


>gi|311113765|ref|YP_003984987.1| ATP-dependent Clp protease proteolytic subunit [Rothia dentocariosa
           ATCC 17931]
 gi|310945259|gb|ADP41553.1| ATP-dependent Clp protease proteolytic subunit [Rothia dentocariosa
           ATCC 17931]
          Length = 224

 Score =  220 bits (560), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 99/213 (46%), Positives = 150/213 (70%), Gaps = 6/213 (2%)

Query: 1   MSF--EGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATL 58
           M++  +  A +   + +  ++P   E+T  G +  D Y++L ++RI+F+  Q++D  A  
Sbjct: 1   MNYLPQDSAPQMPSNRY--VLPSFEERTPYGYKRQDPYAKLFEDRIIFLGTQVDDASADD 58

Query: 59  ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLL 118
           I AQLL LEA++P ++I+LYINSPGG  TA  AIYDTMQFI+P I T C+GQAAS  ++L
Sbjct: 59  IMAQLLVLEAQDPDRDITLYINSPGGSFTAMTAIYDTMQFIRPEIQTVCLGQAASAAAVL 118

Query: 119 LSAGEKGMRFALPNARILLHQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
           L+AG  G R ALPNAR+L+HQP  SG   GQASD+E HA ++++++    +    + GKT
Sbjct: 119 LAAGTPGKRLALPNARVLIHQPALSGQQGGQASDLEIHANEVMRMREWTAQTLALHSGKT 178

Query: 177 YEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           YEEV+++++RD+I++A+ A ++G+VDKVL SR 
Sbjct: 179 YEEVDRSIERDNILTAAAAQEYGLVDKVLDSRK 211


>gi|239941127|ref|ZP_04693064.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           roseosporus NRRL 15998]
 gi|239987605|ref|ZP_04708269.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           roseosporus NRRL 11379]
 gi|291444568|ref|ZP_06583958.1| ATP-dependent Clp protease proteolytic subunit 2 [Streptomyces
           roseosporus NRRL 15998]
 gi|291347515|gb|EFE74419.1| ATP-dependent Clp protease proteolytic subunit 2 [Streptomyces
           roseosporus NRRL 15998]
          Length = 227

 Score =  220 bits (560), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 89/193 (46%), Positives = 137/193 (70%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP  VE+T++G R YD Y++L +ER++F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 28  VVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISI 87

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQF+KP I T CMGQAAS  ++LL+AG  G R ALP+AR+L+
Sbjct: 88  YINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPHARVLI 147

Query: 138 HQPSGGFSG-QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQPS      Q SD+E  A +I++++ +L E+  ++     E++ + ++RD I++A +A 
Sbjct: 148 HQPSSQTGREQLSDLEIAANEILRMRTQLEEMLARHSTTPLEKISEDIERDKILTAEDAL 207

Query: 197 DWGVVDKVLMSRI 209
            +G+VD+++ +R 
Sbjct: 208 AYGLVDQIVSTRK 220


>gi|223947307|gb|ACN27737.1| unknown [Zea mays]
          Length = 310

 Score =  220 bits (560), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 79/176 (44%), Positives = 122/176 (69%)

Query: 31  RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGM 90
              D  + LL++RIVF+   ++D  A LI +QLL L+AE+  K+I L+INSPGG +TAGM
Sbjct: 70  EELDTTNMLLRQRIVFLGSPVDDTSADLIISQLLLLDAEDQTKDIKLFINSPGGSITAGM 129

Query: 91  AIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASD 150
            +YD M+F K  +ST C G AASMG+ LL+AG KG R+ +PNARI++HQPSGG  G+ ++
Sbjct: 130 GVYDAMKFCKADVSTVCFGLAASMGAFLLAAGTKGKRYCMPNARIMIHQPSGGAGGKVTE 189

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           +    ++++  K ++N+I  +  GK+ E++++    D+ MS SEA D+G+VD ++ 
Sbjct: 190 MGLQIREMMYEKIKINKIMSRITGKSEEQIDEDTKFDYFMSPSEAKDYGIVDNIID 245


>gi|168701666|ref|ZP_02733943.1| ATP-dependent Clp protease proteolytic subunit [Gemmata
           obscuriglobus UQM 2246]
          Length = 208

 Score =  220 bits (560), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 83/173 (47%), Positives = 124/173 (71%), Gaps = 1/173 (0%)

Query: 41  KERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           ++RI+F+   I + +ATL+  QLL+LE E   ++ISLYINSPGG V+A +AIYDTMQF++
Sbjct: 37  EQRIIFLNWPINNDVATLVIKQLLYLEYEKKSEDISLYINSPGGSVSATLAIYDTMQFMQ 96

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
            PI+TFCMG AAS  ++LL+AG    R+A+PN+++++HQP G   GQ SDIE  A +I++
Sbjct: 97  SPINTFCMGLAASGAAVLLAAGSPKKRYAMPNSKVMIHQPYGQVGGQVSDIEIQANEILR 156

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
            + RLNEI  K+ G+  E + +  DRD    A EA  +G+VD+VL+ R ++++
Sbjct: 157 ERGRLNEILAKHTGQPVEIIARETDRDKYYHADEAKAFGLVDEVLV-RPELKK 208


>gi|170516915|gb|ACB15394.1| ClpP1 [Bifidobacterium longum]
          Length = 200

 Score =  220 bits (560), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 86/173 (49%), Positives = 127/173 (73%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I++RLLK+RI+++  +++D MA  ICAQLL L AE+P+K+I LYINSPGG +TAGMAIYD
Sbjct: 17  IFNRLLKDRIIWMGEEVKDDMANRICAQLLMLAAEDPKKDIWLYINSPGGSITAGMAIYD 76

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ I+P ++T  +G  ASMG  LLS+G KG R+   +AR+L+HQPSGG  G A+D+  +
Sbjct: 77  TMQLIEPDVATVGLGMCASMGQFLLSSGTKGKRYLTSHARVLMHQPSGGIGGTATDVRIN 136

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+ I+ +K+ ++E+  +  G T EE+ +  + DH  +A EA D+G VDK++ +
Sbjct: 137 AELIMDMKKTMSELTAEQTGHTLEEIYRDNEYDHWFTAQEALDYGFVDKLVTT 189


>gi|154487068|ref|ZP_02028475.1| hypothetical protein BIFADO_00906 [Bifidobacterium adolescentis
           L2-32]
 gi|154084931|gb|EDN83976.1| hypothetical protein BIFADO_00906 [Bifidobacterium adolescentis
           L2-32]
          Length = 233

 Score =  220 bits (560), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 84/192 (43%), Positives = 134/192 (69%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y+RL ++RI+F+  Q++D  A  I AQLL LE+++P +++ +
Sbjct: 41  VLPQFEEKTPYGYKRQDPYTRLFEDRIIFMGVQVDDTSADDIMAQLLVLESQDPNRDVMM 100

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL+AG KG R  LPNAR+L+
Sbjct: 101 YINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLAAGAKGKRLMLPNARVLI 160

Query: 138 HQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+     G+A++IE  A+++++++  L     K+ G+  E++ K ++ D  ++A EA 
Sbjct: 161 HQPAIDQGFGKATEIEIQAKEMLRMREWLENTLAKHTGRDIEKIRKDIEVDTFLTAQEAK 220

Query: 197 DWGVVDKVLMSR 208
           ++G+VD+VL  R
Sbjct: 221 EYGIVDEVLEHR 232


>gi|290962845|ref|YP_003494027.1| ATP-dependent Clp protease proteolytic subunit 1 [Streptomyces
           scabiei 87.22]
 gi|260652371|emb|CBG75504.1| putative ATP-dependent Clp protease proteolytic subunit 1
           [Streptomyces scabiei 87.22]
          Length = 218

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 88/197 (44%), Positives = 128/197 (64%), Gaps = 1/197 (0%)

Query: 20  PMVVEQTNRGERSYD-IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           P   +      R  D + ++LL +RIVF+  Q+++  A  +CAQLL L AE+P+ +ISL 
Sbjct: 14  PRAEDGDTPASRFDDHLAAQLLAQRIVFLGTQVDEVSANRVCAQLLLLSAEDPRTDISLC 73

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AI+DTM+ I   +ST  MG AASMG  LLS G +G R+ALPNARI++H
Sbjct: 74  INSPGGSVTAGLAIHDTMRLIPNDVSTLAMGFAASMGQFLLSVGARGKRYALPNARIMMH 133

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPS G  G  +DIE  A+++   KR +  I  ++ G+T E + +  DRD   +A +A ++
Sbjct: 134 QPSAGIGGTTADIEIQAENLEFTKRAIERITAEHTGQTVETISRDGDRDRWFTAEQAREY 193

Query: 199 GVVDKVLMSRIDIEEKS 215
           G+VD+V+ +  D+   S
Sbjct: 194 GMVDRVVETLDDVRPAS 210


>gi|167391831|ref|YP_001671708.1| ATP-dependent Clp protease proteolytic subunit [Carica papaya]
 gi|166344158|gb|ABY86808.1| ATP-dependent Clp protease proteolytic subunit [Carica papaya]
          Length = 196

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 74/189 (39%), Positives = 120/189 (63%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     D+Y+RL +ER++F+  +++  ++  +   +++L  E+  K++ 
Sbjct: 5   VPKVPFRSPGEEDASWVDVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIESDTKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYDTMQF++P + T CMG AASMGS +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGVAIYDTMQFVQPDVQTICMGLAASMGSFILVGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  L  +YV+  GK    V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQVGEFILEAEELLKLRETLTRVYVQRTGKPLWVVSEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
             +G+VD V
Sbjct: 185 QAYGIVDLV 193


>gi|326779366|ref|ZP_08238631.1| Endopeptidase Clp [Streptomyces cf. griseus XylebKG-1]
 gi|326659699|gb|EGE44545.1| Endopeptidase Clp [Streptomyces cf. griseus XylebKG-1]
          Length = 222

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 88/193 (45%), Positives = 137/193 (70%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP  VE+T++G R YD Y++L +ER++F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 23  VVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISI 82

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQF+KP I T CMGQAAS  ++LL+AG  G R ALP+AR+L+
Sbjct: 83  YINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPHARVLI 142

Query: 138 HQPSGGFSG-QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQPS      Q SD+E  A +I++++ +L ++  ++     E++ + ++RD I++A +A 
Sbjct: 143 HQPSSQTGREQLSDLEIAANEILRMRTQLEQMLARHSTTPLEKISEDIERDKILTAEDAL 202

Query: 197 DWGVVDKVLMSRI 209
            +G+VD+++ +R 
Sbjct: 203 AYGLVDQIVSTRK 215


>gi|23465518|ref|NP_696121.1| ATP-dependent Clp protease proteolytic subunit 1 [Bifidobacterium
           longum NCC2705]
 gi|189439549|ref|YP_001954630.1| ATP-dependent Clp proteases Protease subunit [Bifidobacterium
           longum DJO10A]
 gi|227546003|ref|ZP_03976052.1| ATP-dependent Clp protease proteolytic subunit 1 [Bifidobacterium
           longum subsp. infantis ATCC 55813]
 gi|239621941|ref|ZP_04664972.1| ATP-dependent Clp protease proteolytic subunit 2 [Bifidobacterium
           longum subsp. infantis CCUG 52486]
 gi|296453940|ref|YP_003661083.1| endopeptidase Clp [Bifidobacterium longum subsp. longum JDM301]
 gi|312132958|ref|YP_004000297.1| clpp2 [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482289|ref|ZP_07941310.1| Clp protease [Bifidobacterium sp. 12_1_47BFAA]
 gi|322688890|ref|YP_004208624.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           longum subsp. infantis 157F]
 gi|322690865|ref|YP_004220435.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           longum subsp. longum JCM 1217]
 gi|67460558|sp|Q8G5Q9|CLPP2_BIFLO RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|23326178|gb|AAN24757.1| ATP-dependent Clp protease proteolytic subunit 1 [Bifidobacterium
           longum NCC2705]
 gi|189427984|gb|ACD98132.1| ATP-dependent Clp proteases Protease subunit [Bifidobacterium
           longum DJO10A]
 gi|227213637|gb|EEI81486.1| ATP-dependent Clp protease proteolytic subunit 1 [Bifidobacterium
           longum subsp. infantis ATCC 55813]
 gi|239515132|gb|EEQ54999.1| ATP-dependent Clp protease proteolytic subunit 2 [Bifidobacterium
           longum subsp. infantis CCUG 52486]
 gi|296183371|gb|ADH00253.1| Endopeptidase Clp [Bifidobacterium longum subsp. longum JDM301]
 gi|311773940|gb|ADQ03428.1| ClpP2 [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916305|gb|EFV37706.1| Clp protease [Bifidobacterium sp. 12_1_47BFAA]
 gi|320455721|dbj|BAJ66343.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           longum subsp. longum JCM 1217]
 gi|320460226|dbj|BAJ70846.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           longum subsp. infantis 157F]
          Length = 207

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 86/173 (49%), Positives = 127/173 (73%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I++RLLK+RI+++  +++D MA  ICAQLL L AE+P+K+I LYINSPGG +TAGMAIYD
Sbjct: 24  IFNRLLKDRIIWMGEEVKDDMANRICAQLLMLAAEDPKKDIWLYINSPGGSITAGMAIYD 83

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ I+P ++T  +G  ASMG  LLS+G KG R+   +AR+L+HQPSGG  G A+D+  +
Sbjct: 84  TMQLIEPDVATVGLGMCASMGQFLLSSGTKGKRYLTSHARVLMHQPSGGIGGTATDVRIN 143

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+ I+ +K+ ++E+  +  G T EE+ +  + DH  +A EA D+G VDK++ +
Sbjct: 144 AELIMDMKKTMSELTAEQTGHTLEEIYRDNEYDHWFTAQEALDYGFVDKLVTT 196


>gi|71000128|ref|XP_754781.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Aspergillus
           fumigatus Af293]
 gi|66852418|gb|EAL92743.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Aspergillus
           fumigatus Af293]
 gi|159127789|gb|EDP52904.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Aspergillus
           fumigatus A1163]
          Length = 175

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 91/160 (56%), Positives = 124/160 (77%), Gaps = 4/160 (2%)

Query: 55  MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASM 114
           M+  I AQLLFLEA+NPQK I LYINSPGG VTAG+AIYDTM +I  P+ST C+GQAASM
Sbjct: 1   MSASIVAQLLFLEADNPQKPIHLYINSPGGSVTAGLAIYDTMTYIASPVSTICVGQAASM 60

Query: 115 GSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKN-C 173
           GSLLL  G+ G R+ LP++ I++HQPSGG+ GQASDI  HA++I++++ +LN+IY ++  
Sbjct: 61  GSLLLCGGDPGKRYCLPHSSIMIHQPSGGYFGQASDIAIHAKEILRVRNQLNKIYQRHLT 120

Query: 174 GK---TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           GK   + EE+EK ++RD+ M A EA + G+VD++L  R+ 
Sbjct: 121 GKKVLSLEEIEKLMERDYFMGAQEALEMGIVDEILDRRVK 160


>gi|119961335|ref|YP_948115.1| ATP-dependent Clp protease proteolytic subunit [Arthrobacter
           aurescens TC1]
 gi|119948194|gb|ABM07105.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP
           [Arthrobacter aurescens TC1]
          Length = 219

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 91/194 (46%), Positives = 137/194 (70%), Gaps = 2/194 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++RI+F+  Q++D  A  I AQLL LE+ +P ++I+L
Sbjct: 18  VLPQFEERTPYGFKRQDPYTKLFEDRIIFLGVQVDDASADDIMAQLLVLESTDPDRDITL 77

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+I+P I T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 78  YINSPGGSFTAMTAIYDTMQYIRPEIQTVCLGQAASAAAVLLAAGTPGKRLALPNARVLI 137

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SGG  GQASD+E  A ++++++  L +    + G+T E+V   ++RD I++A++A
Sbjct: 138 HQPALSGGQGGQASDLEIQAAEVMRMRTWLEDTLAHHSGRTSEQVNNDIERDKILTAADA 197

Query: 196 CDWGVVDKVLMSRI 209
             +G++D+VL SR 
Sbjct: 198 LSYGLIDQVLDSRK 211


>gi|227504046|ref|ZP_03934095.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           striatum ATCC 6940]
 gi|227199376|gb|EEI79424.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           striatum ATCC 6940]
          Length = 207

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 85/193 (44%), Positives = 133/193 (68%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +EQ  +G ++ + YS+L +ERI+F+  Q++D  A  I AQLL LE+++P ++I++
Sbjct: 12  VLPEFIEQNAQGSKTTNPYSKLFEERIIFLGTQVDDTSANDIMAQLLVLESQDPDRDITM 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA MAIYDTM++++P + T C+GQAAS  ++LL+AG  G R ALPN+R+L+
Sbjct: 72  YINSPGGSFTALMAIYDTMRYVRPDVQTVCLGQAASAAAVLLAAGAPGKRAALPNSRVLI 131

Query: 138 HQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP      GQ SD+E  A +I +++R +     ++ G+T E+V    DRD I++A EA 
Sbjct: 132 HQPRTQGTQGQVSDLEIEANEIERMRRLMENTLAEHTGRTAEQVRIDTDRDKILTAHEAV 191

Query: 197 DWGVVDKVLMSRI 209
           ++G++D V   R 
Sbjct: 192 EYGLIDTVFDYRK 204


>gi|166235729|gb|ABY85636.1| ATP-dependent protease proteolytic subunit [Silene latifolia]
          Length = 196

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 75/189 (39%), Positives = 119/189 (62%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     DIY+RL +ER++F+  +++  ++  +   +++L  E+  K++ 
Sbjct: 5   VPKVPFRSPGDEDASWVDIYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V +G+AIYDTMQF++P + T CMG AASMGS +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVISGVAIYDTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  L  +YV+  GK    V + ++RD  MSA EA
Sbjct: 125 IHQPVSSFYEAQTGEFILEAEELLKLRETLTRVYVQRTGKPIWVVSEDMERDVFMSAEEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGIVDLV 193


>gi|226309395|ref|YP_002769355.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rhodococcus
           erythropolis PR4]
 gi|229494681|ref|ZP_04388439.1| Clp protease [Rhodococcus erythropolis SK121]
 gi|226188512|dbj|BAH36616.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rhodococcus
           erythropolis PR4]
 gi|229318348|gb|EEN84211.1| Clp protease [Rhodococcus erythropolis SK121]
          Length = 195

 Score =  219 bits (558), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 95/188 (50%), Positives = 135/188 (71%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+E+T  GERS+DI+SRLL ERIVF+  +I+D +A ++ AQ+L L+A+NP +EI LY
Sbjct: 6   IPSVIERTPTGERSFDIFSRLLNERIVFLGTEIDDGVANVVMAQMLHLQADNPDREIGLY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TA +AIYDTMQF+KP IST+CMGQAAS  ++LL+AG  G R  L ++R+LLH
Sbjct: 66  INSPGGSTTAMLAIYDTMQFLKPTISTYCMGQAASAAAVLLAAGTPGHRHVLAHSRVLLH 125

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPS   SG  SD+   A +I++I+ +   I  K+ G++ E + K  DRD I +A +A  +
Sbjct: 126 QPSTQGSGTISDLALQAAEILRIREQTEAILSKHTGQSVERLRKDTDRDRIFTADDAISY 185

Query: 199 GVVDKVLM 206
           G+ D ++ 
Sbjct: 186 GLADTLIE 193


>gi|226507940|ref|NP_001149210.1| ATP-dependent Clp protease proteolytic subunit 1 [Zea mays]
 gi|195625490|gb|ACG34575.1| ATP-dependent Clp protease proteolytic subunit 1 [Zea mays]
          Length = 285

 Score =  219 bits (558), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 79/176 (44%), Positives = 121/176 (68%)

Query: 31  RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGM 90
              D  + LL++RIVF+   ++D  A LI +QLL L+AE+  K+I L+INSPGG +TAGM
Sbjct: 70  EELDTTNMLLRQRIVFLGSPVDDTSADLIISQLLLLDAEDQTKDIKLFINSPGGSITAGM 129

Query: 91  AIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASD 150
            +YD M+F K  +ST C G AASMG+ LL+AG KG R+  PNARI++HQPSGG  G+ ++
Sbjct: 130 GVYDAMKFCKADVSTVCFGLAASMGAFLLAAGTKGKRYCXPNARIMIHQPSGGAGGKVTE 189

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           +    ++++  K ++N+I  +  GK+ E++++    D+ MS SEA D+G+VD ++ 
Sbjct: 190 MGLQIREMMYEKIKINKIMSRITGKSEEQIDEDTKFDYFMSPSEAKDYGIVDNIID 245


>gi|63079328|gb|AAY29671.1| predicted ATP-dependent Clp protease proteolytic subunit 1
           [Bifidobacterium breve UCC2003]
          Length = 207

 Score =  219 bits (558), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 86/173 (49%), Positives = 127/173 (73%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I++RLLK+RI+++  +++D MA  ICAQLL L AE+P+K+I LYINSPGG +TAGMAIYD
Sbjct: 24  IFNRLLKDRIIWMGEEVKDDMANRICAQLLMLAAEDPKKDIWLYINSPGGSITAGMAIYD 83

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ I+P ++T  +G  ASMG  LLS+G KG R+   +AR+L+HQPSGG  G A+D+  +
Sbjct: 84  TMQLIEPDVATVGLGMCASMGQFLLSSGTKGKRYLTSHARVLMHQPSGGIGGTATDVRIN 143

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+ I+ +K+ ++E+  +  G T EE+ +  + DH  +A EA D+G VDK++ +
Sbjct: 144 AELIMDMKKTMSELTAEQTGHTVEEIYRDNEYDHWFTAQEALDYGFVDKLVTT 196


>gi|225021669|ref|ZP_03710861.1| hypothetical protein CORMATOL_01697 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305680976|ref|ZP_07403783.1| endopeptidase Clp [Corynebacterium matruchotii ATCC 14266]
 gi|224945660|gb|EEG26869.1| hypothetical protein CORMATOL_01697 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305659181|gb|EFM48681.1| endopeptidase Clp [Corynebacterium matruchotii ATCC 14266]
          Length = 212

 Score =  219 bits (558), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 84/206 (40%), Positives = 136/206 (66%), Gaps = 1/206 (0%)

Query: 5   GCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLL 64
           G + +        ++P  +EQ+  G +  + Y++L +ERI+F+  Q++D  A  I AQLL
Sbjct: 4   GMSNEMHLPTARYVLPSFIEQSAYGTKETNPYAKLFEERIIFLGTQVDDTSANDIMAQLL 63

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
            LE  +P ++I++YINSPGG  T+ MAIYDTMQ+++P + T C+GQAAS  ++LL+AG  
Sbjct: 64  VLEGLDPDRDITMYINSPGGSFTSLMAIYDTMQYVRPDVRTVCLGQAASAAAVLLAAGAP 123

Query: 125 GMRFALPNARILLHQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
           G R ALPNAR+L+HQP+     GQ SD+E  A +I +++  + E   ++ G++ E++ + 
Sbjct: 124 GKRAALPNARVLIHQPATEGARGQVSDLEIQAAEIQRMRTLMEETLARHTGRSAEQISED 183

Query: 184 LDRDHIMSASEACDWGVVDKVLMSRI 209
            DRD I++A EA ++G++D+V   R 
Sbjct: 184 TDRDKILTAQEALEYGIIDQVFDYRK 209


>gi|290489432|gb|ADD31100.1| clp protease proteolytic subunit protein [Antirrhinum majus]
          Length = 196

 Score =  219 bits (558), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 74/189 (39%), Positives = 119/189 (62%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     D+Y+RL +ER++F+   ++  ++  +   +++L  E+  K++ 
Sbjct: 5   VPKVPFRSPGEEDAAWVDVYNRLYRERLLFLGQDVDSEISNQLIGLMVYLSIEDDTKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYDTMQF++P + T CMG AASMGS +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVVPGVAIYDTMQFVRPEVHTICMGLAASMGSFILVGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  L  +YV+  GK    V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQTGEFILEAEELLKLRETLTRVYVQRTGKPLWVVSEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
             +G+VD V
Sbjct: 185 QAYGIVDLV 193


>gi|242053033|ref|XP_002455662.1| hypothetical protein SORBIDRAFT_03g018270 [Sorghum bicolor]
 gi|241927637|gb|EES00782.1| hypothetical protein SORBIDRAFT_03g018270 [Sorghum bicolor]
          Length = 313

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 78/176 (44%), Positives = 121/176 (68%)

Query: 31  RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGM 90
              D  + LL++RIVF+   ++D  A LI +QLL L+AE+  K+I L+INSPGG +TAGM
Sbjct: 73  EELDTSNMLLRQRIVFLGSSVDDTSADLIISQLLLLDAEDQTKDIKLFINSPGGSITAGM 132

Query: 91  AIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASD 150
            +YD M+F K  +ST C G AASMG+ LL+AG KG R+ +PNARI++HQPSGG  G+ ++
Sbjct: 133 GVYDAMKFCKADVSTVCFGLAASMGAFLLAAGTKGKRYCMPNARIMIHQPSGGAGGKVTE 192

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           +    ++++  K ++N+I  +  GK+ E++++    D+ MS  EA D+G+VD ++ 
Sbjct: 193 MGLQIREMMYEKIKINKIMSRITGKSKEQIDEDTKFDYFMSPWEAKDYGIVDSIID 248


>gi|224500839|ref|ZP_03669188.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes Finland 1988]
          Length = 164

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 96/164 (58%), Positives = 127/164 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT+RGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL+A++P+K+I
Sbjct: 1   MNLIPTVIEQTSRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG ++AGMAIYDTM F+K  + T  MG AASMGS LL+AG  G RFALPNA I
Sbjct: 61  FLYINSPGGSISAGMAIYDTMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
           ++HQP GG  GQA++IE  A+ I+KIK R+N I  +  G+ YE 
Sbjct: 121 MIHQPLGGAQGQATEIEIAARHILKIKERMNTIMAEKTGQPYEV 164


>gi|46190463|ref|ZP_00206474.1| COG0740: Protease subunit of ATP-dependent Clp proteases
           [Bifidobacterium longum DJO10A]
 gi|291517065|emb|CBK70681.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Bifidobacterium longum subsp. longum F8]
          Length = 197

 Score =  218 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 86/173 (49%), Positives = 127/173 (73%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I++RLLK+RI+++  +++D MA  ICAQLL L AE+P+K+I LYINSPGG +TAGMAIYD
Sbjct: 14  IFNRLLKDRIIWMGEEVKDDMANRICAQLLMLAAEDPKKDIWLYINSPGGSITAGMAIYD 73

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ I+P ++T  +G  ASMG  LLS+G KG R+   +AR+L+HQPSGG  G A+D+  +
Sbjct: 74  TMQLIEPDVATVGLGMCASMGQFLLSSGTKGKRYLTSHARVLMHQPSGGIGGTATDVRIN 133

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+ I+ +K+ ++E+  +  G T EE+ +  + DH  +A EA D+G VDK++ +
Sbjct: 134 AELIMDMKKTMSELTAEQTGHTLEEIYRDNEYDHWFTAQEALDYGFVDKLVTT 186


>gi|182438717|ref|YP_001826436.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178467233|dbj|BAG21753.1| putative ATP-dependent Clp protease proteolytic subunit 2
           [Streptomyces griseus subsp. griseus NBRC 13350]
          Length = 227

 Score =  218 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 88/193 (45%), Positives = 137/193 (70%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP  VE+T++G R YD Y++L +ER++F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 28  VVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISI 87

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQF+KP I T CMGQAAS  ++LL+AG  G R ALP+AR+L+
Sbjct: 88  YINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPHARVLI 147

Query: 138 HQPSGGFSG-QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQPS      Q SD+E  A +I++++ +L ++  ++     E++ + ++RD I++A +A 
Sbjct: 148 HQPSSQTGREQLSDLEIAANEILRMRTQLEQMLARHSTTPLEKISEDIERDKILTAEDAL 207

Query: 197 DWGVVDKVLMSRI 209
            +G+VD+++ +R 
Sbjct: 208 AYGLVDQIVSTRK 220


>gi|224128302|ref|XP_002320293.1| predicted protein [Populus trichocarpa]
 gi|222861066|gb|EEE98608.1| predicted protein [Populus trichocarpa]
          Length = 168

 Score =  218 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 79/157 (50%), Positives = 116/157 (73%)

Query: 55  MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASM 114
           MA +I AQLL+L+A +P K+I +Y+NSPGG VTAGMAI+DTM+ I+P +ST C+G AASM
Sbjct: 1   MANIIVAQLLYLDAVDPNKDIVMYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASM 60

Query: 115 GSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCG 174
           G+ LLSAG KG R++LPN+RI++HQP GG  G  SDI+  A +++  K  LN     + G
Sbjct: 61  GAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDIQANEMLHHKANLNGYLAYHTG 120

Query: 175 KTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           ++ E++ +  DRD+ MSA EA D+G++D V+++ + +
Sbjct: 121 QSLEKINQDTDRDYFMSAKEAKDYGLIDGVILNPLKV 157


>gi|282866710|ref|ZP_06275750.1| Endopeptidase Clp [Streptomyces sp. ACTE]
 gi|282558409|gb|EFB63971.1| Endopeptidase Clp [Streptomyces sp. ACTE]
          Length = 232

 Score =  218 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 90/193 (46%), Positives = 137/193 (70%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP  VE+T++G R YD Y++L +ER++F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 33  VVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISI 92

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQF+KP I T CMGQAAS  ++LL+AG  G R ALP+AR+L+
Sbjct: 93  YINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPHARVLI 152

Query: 138 HQPSGGFSG-QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQPS      Q SD+E  A +I++++ +L E+  K+     E++ + ++RD I++A +A 
Sbjct: 153 HQPSSQTGREQLSDLEIAANEILRMRTQLEEMLAKHSTTPLEKISEDIERDKILTADDAL 212

Query: 197 DWGVVDKVLMSRI 209
            +G+VD+++ +R 
Sbjct: 213 AYGLVDQIVSTRK 225


>gi|255532580|ref|YP_003092952.1| endopeptidase Clp [Pedobacter heparinus DSM 2366]
 gi|255345564|gb|ACU04890.1| Endopeptidase Clp [Pedobacter heparinus DSM 2366]
          Length = 226

 Score =  218 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 79/202 (39%), Positives = 134/202 (66%)

Query: 6   CAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF 65
            ++  +    + + P + E+        D++SRL+ +RI+F+   +++  A +I AQLLF
Sbjct: 25  ISRTSAMAGPVAMTPYITEERQLNVAQMDVFSRLMMDRIIFLGEAVDERNANVIQAQLLF 84

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L++ + +K+I LY+NSPGG V AG+ IYDTMQFI P ++T C G A SMGS+LL AG  G
Sbjct: 85  LQSADAEKDIQLYVNSPGGSVYAGLGIYDTMQFIAPDVATICTGIALSMGSVLLCAGAAG 144

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
            R AL +AR+++HQ SGG  G A+D++   + ++++++ L +I  K+ G+ YE + +   
Sbjct: 145 KRSALQHARVMIHQTSGGTQGTATDMDISVRQVLQVQKELYQIIAKHSGQPYERINEAAS 204

Query: 186 RDHIMSASEACDWGVVDKVLMS 207
           RD+ M+++EA ++G+VD++L  
Sbjct: 205 RDYWMTSAEAKEFGMVDEILSK 226


>gi|172041059|ref|YP_001800773.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           urealyticum DSM 7109]
 gi|171852363|emb|CAQ05339.1| ATP-dependent Clp protease proteolytic subunit 2 [Corynebacterium
           urealyticum DSM 7109]
          Length = 206

 Score =  218 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 88/202 (43%), Positives = 135/202 (66%), Gaps = 3/202 (1%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           K  E  +  ++P  VE ++ G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE 
Sbjct: 2   KMPESRY--ILPSFVEHSSYGAKESNPYNKLFEERIIFLGTQVDDAAANDIMAQLLVLEG 59

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
            +P ++I++YINSPGG  T+ MAIYDTMQ+++P + T C+GQAAS  ++LL+AG  G R 
Sbjct: 60  LDPDRDITMYINSPGGSFTSLMAIYDTMQYVRPDVQTVCLGQAASAAAVLLAAGTPGKRA 119

Query: 129 ALPNARILLHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           ALPNAR+L+HQP SGG  GQ SD+E  A +I ++++ +     ++ GKT E++    DRD
Sbjct: 120 ALPNARVLIHQPASGGVQGQVSDLEIQANEIERMRKLMETTLARHTGKTEEQIRIDTDRD 179

Query: 188 HIMSASEACDWGVVDKVLMSRI 209
            I+ A  A ++G++D+V   R 
Sbjct: 180 KILDAEAAKEYGIIDQVFEYRK 201


>gi|91208926|ref|YP_538961.1| ATP-dependent Clp protease proteolytic subunit [Gossypium hirsutum]
 gi|122201402|sp|Q2L926|CLPP_GOSHI RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|85687440|gb|ABC73652.1| clp protease proteolytic subunit [Gossypium hirsutum]
          Length = 196

 Score =  218 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 76/189 (40%), Positives = 119/189 (62%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+RL +ER++F+  +++  ++  +   +++L  EN  K++ 
Sbjct: 5   VPKVPFRNPGEEDAVWVDVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIENDTKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYDTMQF++P + T CMG AASMGS LL+ GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGVAIYDTMQFVQPDVHTICMGLAASMGSFLLAGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  L  +YV+  GK    V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQTGEFILEAEELLKLRESLTRVYVQRTGKPLWVVSEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGIVDLV 193


>gi|290489448|gb|ADD31108.1| clp protease proteolytic subunit protein [Nerium oleander]
          Length = 196

 Score =  218 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 74/189 (39%), Positives = 119/189 (62%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     D+Y+RL +ER++F+   ++  ++  +   +++L  E+  K++ 
Sbjct: 5   VPKVPFRSPGEEDASWVDVYNRLYRERLLFLGQAVDSEISNQLIGLMIYLSIEDDNKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYDTMQF++P + T CMG AASMGS +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGVAIYDTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  L  +YV+  GK    V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQTGEFILEAEELLKLRETLTRVYVQRTGKPLWVVSEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
             +G+VD V
Sbjct: 185 QAYGIVDLV 193


>gi|229817802|ref|ZP_04448084.1| hypothetical protein BIFANG_03078 [Bifidobacterium angulatum DSM
           20098]
 gi|229785591|gb|EEP21705.1| hypothetical protein BIFANG_03078 [Bifidobacterium angulatum DSM
           20098]
          Length = 215

 Score =  218 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 87/207 (42%), Positives = 140/207 (67%), Gaps = 1/207 (0%)

Query: 3   FEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQ 62
           F   A++ +      ++P   E+T  G ++ D YSRL ++RI+F+  Q++D  A  I AQ
Sbjct: 8   FVARAQRLAGPTNRYVMPQFSEKTPYGMKTMDAYSRLFEDRIIFLGVQVDDTSADDIMAQ 67

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           LL LE+++P +++ +YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL+AG
Sbjct: 68  LLVLESQDPNRDVMMYINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLAAG 127

Query: 123 EKGMRFALPNARILLHQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVE 181
            +G R  LPNAR+L+HQP+     G+A++IE  A+++++++  L     K+ G+  E + 
Sbjct: 128 AEGKRLMLPNARVLIHQPAIDQGFGKATEIEIQAREMLRMREWLENTLAKHTGQPVERIR 187

Query: 182 KTLDRDHIMSASEACDWGVVDKVLMSR 208
           K ++ D  ++ASEA ++G+VD+VL  R
Sbjct: 188 KDIEVDTFLTASEAKEYGIVDEVLEHR 214


>gi|255326613|ref|ZP_05367690.1| Clp protease [Rothia mucilaginosa ATCC 25296]
 gi|255296353|gb|EET75693.1| Clp protease [Rothia mucilaginosa ATCC 25296]
          Length = 229

 Score =  218 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 97/194 (50%), Positives = 143/194 (73%), Gaps = 2/194 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++RI+F+  Q++D  A  I AQLL LEA++P+++I+L
Sbjct: 23  VLPSFEERTPYGYKRQDPYAKLFEDRIIFLGTQVDDASADDIMAQLLVLEAQDPERDITL 82

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQFI+P I T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 83  YINSPGGSFTAMTAIYDTMQFIRPEIQTVCLGQAASAAAVLLAAGTPGKRLALPNARVLI 142

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SG   GQASDIE HA ++++++    +    + GKTYE+V+++++RD+I++A+ A
Sbjct: 143 HQPALSGQQGGQASDIEIHANEVMRMREWTAQTLALHSGKTYEKVDRSIERDNILTAAAA 202

Query: 196 CDWGVVDKVLMSRI 209
            ++G+VDKVL SR 
Sbjct: 203 LEYGLVDKVLESRK 216


>gi|308177634|ref|YP_003917040.1| ATP-dependent Clp protease proteolytic subunit ClpP [Arthrobacter
           arilaitensis Re117]
 gi|307745097|emb|CBT76069.1| ATP-dependent Clp protease proteolytic subunit ClpP [Arthrobacter
           arilaitensis Re117]
          Length = 219

 Score =  218 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 89/213 (41%), Positives = 142/213 (66%), Gaps = 6/213 (2%)

Query: 1   MSF--EGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATL 58
           M+F  E  + +     +  ++P   E+T  G +  D Y++L ++RI+F+  Q++D  A  
Sbjct: 1   MNFNPEAVSGQMPSARY--ILPQFEERTPYGFKRQDPYAKLFEDRIIFLGAQVDDASADD 58

Query: 59  ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLL 118
           + AQLL LE+ +P+++++LYINSPGG  TA  AIYDT+QFI+P + T C+GQAAS  ++L
Sbjct: 59  VMAQLLVLESMDPERDVTLYINSPGGSFTAMTAIYDTIQFIRPEVQTVCLGQAASAAAVL 118

Query: 119 LSAGEKGMRFALPNARILLHQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
           L+AG  G R ALPNAR+L+HQP+  GG  G A+D++  A+++++++  L E    + G+ 
Sbjct: 119 LAAGTPGKRLALPNARVLIHQPAMGGGERGTATDLQIQAEEVMRMRSWLEETIASHSGQD 178

Query: 177 YEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
            E+V   ++RD  M+ASEA  +G+VD+VL  R 
Sbjct: 179 VEKVRDDVERDLFMTASEAKVYGIVDEVLTPRK 211


>gi|283794992|ref|YP_003359383.1| ATP-dependent protease subunit [Olea europaea]
 gi|330850767|ref|YP_004376445.1| ATP-dependent Clp protease proteolytic subunit [Olea europaea
           subsp. europaea]
 gi|281428711|gb|ADA69950.1| ATP-dependent protease subunit [Olea europaea]
 gi|291059277|gb|ADD72113.1| clp protease proteolytic subunit [Olea europaea]
 gi|328795457|emb|CBR30339.1| ATP-dependent Clp protease proteolytic subunit [Olea europaea
           subsp. europaea]
          Length = 196

 Score =  218 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 72/189 (38%), Positives = 119/189 (62%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     D+Y+RL +ER++F+  +++  ++  +   +++L  E+  K++ 
Sbjct: 5   VPKVPFRSPGEEDASWVDVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+A+YDTMQF++P + T CMG AASM S +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGVAVYDTMQFVRPDVHTICMGLAASMASFILVGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  L  +YV+  GK    V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQTGEFILEAEELLKLRETLTRVYVQRTGKPLWVVSEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
             +G+VD V
Sbjct: 185 QAYGIVDLV 193


>gi|256391235|ref|YP_003112799.1| endopeptidase Clp [Catenulispora acidiphila DSM 44928]
 gi|256357461|gb|ACU70958.1| Endopeptidase Clp [Catenulispora acidiphila DSM 44928]
          Length = 201

 Score =  218 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 83/190 (43%), Positives = 125/190 (65%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V  Q   GER  DIYS LL ERI+++   I+  +A  + AQLL LE++ P +EISLY
Sbjct: 11  IPYVTTQRPGGERVTDIYSHLLTERIIYLGTAIDAGVANALIAQLLHLESDGPDREISLY 70

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           +N  GG +T+ +AIYDTMQ IK PI T C+GQA ++G++LL+AG  G+R  LP+AR++LH
Sbjct: 71  VNCEGGDLTSMLAIYDTMQHIKAPIRTTCVGQAIAVGAVLLAAGTPGLRSVLPHARVVLH 130

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP+    G   D+   A ++V+++  L  I  ++ G+T E +    DRD + +A+ A ++
Sbjct: 131 QPAARGQGAIPDLIIQADELVRMRSELEAILTQHTGQTAERLRHDTDRDRVFTAAAAVEY 190

Query: 199 GVVDKVLMSR 208
           G+ D+VL  R
Sbjct: 191 GLADQVLGPR 200


>gi|291456561|ref|ZP_06595951.1| Clp protease [Bifidobacterium breve DSM 20213]
 gi|291381838|gb|EFE89356.1| Clp protease [Bifidobacterium breve DSM 20213]
          Length = 197

 Score =  218 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 86/173 (49%), Positives = 127/173 (73%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I++RLLK+RI+++  +++D MA  ICAQLL L AE+P+K+I LYINSPGG +TAGMAIYD
Sbjct: 14  IFNRLLKDRIIWMGEEVKDDMANRICAQLLMLAAEDPKKDIWLYINSPGGSITAGMAIYD 73

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ I+P ++T  +G  ASMG  LLS+G KG R+   +AR+L+HQPSGG  G A+D+  +
Sbjct: 74  TMQLIEPDVATVGLGMCASMGQFLLSSGTKGKRYLTSHARVLMHQPSGGIGGTATDVRIN 133

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+ I+ +K+ ++E+  +  G T EE+ +  + DH  +A EA D+G VDK++ +
Sbjct: 134 AELIMDMKKTMSELTAEQTGHTVEEIYRDNEYDHWFTAQEALDYGFVDKLVTT 186


>gi|284034788|ref|YP_003384719.1| endopeptidase Clp [Kribbella flavida DSM 17836]
 gi|283814081|gb|ADB35920.1| Endopeptidase Clp [Kribbella flavida DSM 17836]
          Length = 192

 Score =  218 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 82/183 (44%), Positives = 122/183 (66%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           E        + IY RLL +RI+ +  +I+D  A  +CAQL+ L AE+P+ +ISLYINSPG
Sbjct: 3   ETMQPNALDHHIYQRLLWQRILVLGDEIKDENANALCAQLILLNAEDPKADISLYINSPG 62

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           G V+AG+AIYDTM FI   ++T+ MG  ASMG +LL+ G  G R++LP+ARI++HQP+GG
Sbjct: 63  GSVSAGLAIYDTMNFISNDVATYAMGLVASMGQVLLTCGAPGKRYSLPHARIMMHQPTGG 122

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
             G ASDI+  A+  +  K+ L ++  K  G+  E+V +  DRD   +  +A ++G+VD+
Sbjct: 123 MGGTASDIKTQAEQSLLAKKDLAKLLSKRTGQPEEKVTEDFDRDRWFTPDQAVEYGIVDR 182

Query: 204 VLM 206
           +L 
Sbjct: 183 ILT 185


>gi|296118750|ref|ZP_06837326.1| Clp protease [Corynebacterium ammoniagenes DSM 20306]
 gi|295968239|gb|EFG81488.1| Clp protease [Corynebacterium ammoniagenes DSM 20306]
          Length = 207

 Score =  218 bits (556), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 85/193 (44%), Positives = 133/193 (68%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +EQ+ +G +  + YS+L +ERI+F+  Q++D  A  I AQLL LE  +P ++I++
Sbjct: 12  VLPSFIEQSAQGTKETNPYSKLFEERIIFLGTQVDDTSANDIMAQLLVLEGMDPDRDITM 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA MAIYDTM++++P + T C+GQAAS  ++LL+AG  G R ALPN+R+L+
Sbjct: 72  YINSPGGSFTALMAIYDTMRYVRPDVQTVCLGQAASAAAVLLAAGAPGKRAALPNSRVLI 131

Query: 138 HQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+     GQ SD+E  A +I +++R +     ++ G+T E+V    DRD I++A EA 
Sbjct: 132 HQPATQGTQGQVSDLEIQAAEIERMRRLMENTLAEHTGRTAEQVRIDTDRDKILTAEEAV 191

Query: 197 DWGVVDKVLMSRI 209
           ++G++D+V   R 
Sbjct: 192 EYGIIDQVFDYRK 204


>gi|254382769|ref|ZP_04998126.1| ATP-dependent Clp protease proteolytic subunit 4 [Streptomyces sp.
           Mg1]
 gi|194341671|gb|EDX22637.1| ATP-dependent Clp protease proteolytic subunit 4 [Streptomyces sp.
           Mg1]
          Length = 224

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 94/193 (48%), Positives = 138/193 (71%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T++G R YD Y++L +ERI+F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 28  VIPRFVERTSQGVREYDPYAKLFEERIIFLGVQIDDASANDVMAQLLCLESMDPDRDISI 87

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQF+KP IST CMGQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 88  YINSPGGSFTALTAIYDTMQFVKPDISTVCMGQAASAAAVLLAAGTPGKRLALPNARVLI 147

Query: 138 HQPSGGFSG-QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQPSGG    Q SD+E  A +I++++ +L  +  K+     E++   ++RD I++A +A 
Sbjct: 148 HQPSGGTGREQLSDLEIAANEILRMRDQLETMLAKHSTTPIEKIRDDIERDKILTAEDAL 207

Query: 197 DWGVVDKVLMSRI 209
            +G+VD+V+ +R 
Sbjct: 208 AYGLVDQVVSTRK 220


>gi|212716951|ref|ZP_03325079.1| hypothetical protein BIFCAT_01895 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660236|gb|EEB20811.1| hypothetical protein BIFCAT_01895 [Bifidobacterium catenulatum DSM
           16992]
          Length = 233

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 84/192 (43%), Positives = 134/192 (69%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y+RL ++RI+F+  Q++D  A  I AQLL LE+++P +++ +
Sbjct: 41  VLPQFEEKTPYGFKRQDPYTRLFEDRIIFMGVQVDDTSADDIMAQLLVLESQDPNRDVMM 100

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL+AG KG R  LPNAR+L+
Sbjct: 101 YINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLAAGAKGKRLMLPNARVLI 160

Query: 138 HQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+     G+A++IE  A+++++++  L     K+ G+  E++ K ++ D  ++A EA 
Sbjct: 161 HQPAIDQGFGKATEIEIQAKEMLRMREWLENTLAKHTGRDVEKIRKDIEVDTFLTAPEAK 220

Query: 197 DWGVVDKVLMSR 208
           ++G+VD+VL  R
Sbjct: 221 EYGIVDEVLEHR 232


>gi|225352780|ref|ZP_03743803.1| hypothetical protein BIFPSEUDO_04410 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156387|gb|EEG69956.1| hypothetical protein BIFPSEUDO_04410 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 233

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 84/192 (43%), Positives = 134/192 (69%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y+RL ++RI+F+  Q++D  A  I AQLL LE+++P +++ +
Sbjct: 41  VLPQFEEKTPYGFKRQDPYTRLFEDRIIFMGVQVDDTSADDIMAQLLVLESQDPNRDVMM 100

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL+AG KG R  LPNAR+L+
Sbjct: 101 YINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLAAGAKGKRLMLPNARVLI 160

Query: 138 HQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+     G+A++IE  A+++++++  L     K+ G+  E++ K ++ D  ++A EA 
Sbjct: 161 HQPAIDQGFGKATEIEIQAKEMLRMREWLENTLAKHTGRDVEKIRKDIEVDTFLTAPEAK 220

Query: 197 DWGVVDKVLMSR 208
           ++G+VD+VL  R
Sbjct: 221 EYGIVDEVLEHR 232


>gi|257068142|ref|YP_003154397.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Brachybacterium faecium DSM 4810]
 gi|256558960|gb|ACU84807.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Brachybacterium faecium DSM 4810]
          Length = 233

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 93/195 (47%), Positives = 138/195 (70%), Gaps = 3/195 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++RI+F+  Q++D  A  + AQLL LE+++P ++I+L
Sbjct: 31  VLPQYEERTAYGMKRQDPYTKLFEDRIIFLGVQVDDASADDVMAQLLVLESQDPDRDITL 90

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+IKP ++T C+GQAAS  ++LL+AG  G R ALPNARIL+
Sbjct: 91  YINSPGGSFTALTAIYDTMQYIKPEVTTVCLGQAASAAAVLLAAGSPGKRLALPNARILI 150

Query: 138 HQPS---GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           HQP+    G  GQASD+E  A +I++++  L E    + G+T E+V K ++RD I++A  
Sbjct: 151 HQPAMGGEGGGGQASDLEIQANEIMRMREWLEETLAHHSGRTKEQVSKDIERDKILTAKA 210

Query: 195 ACDWGVVDKVLMSRI 209
           A ++G+VD+VL SR 
Sbjct: 211 ALEYGLVDQVLESRK 225


>gi|19553609|ref|NP_601611.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           glutamicum ATCC 13032]
 gi|62391253|ref|YP_226655.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           glutamicum ATCC 13032]
 gi|145296393|ref|YP_001139214.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           glutamicum R]
 gi|25008292|sp|Q8NN02|CLPP1_CORGL RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|21325182|dbj|BAB99804.1| Protease subunit of ATP-dependent Clp proteases [Corynebacterium
           glutamicum ATCC 13032]
 gi|41326593|emb|CAF21075.1| ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT CLPP2
           [Corynebacterium glutamicum ATCC 13032]
 gi|140846313|dbj|BAF55312.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 208

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 86/193 (44%), Positives = 131/193 (67%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +EQ+  G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE  +P ++I+L
Sbjct: 13  VLPSFIEQSAYGTKETNPYAKLFEERIIFLGTQVDDTSANDIMAQLLVLEGMDPDRDITL 72

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA MAIYDTMQ+++P + T C+GQAAS  ++LL+AG  G R  LPN+R+L+
Sbjct: 73  YINSPGGSFTALMAIYDTMQYVRPDVQTVCLGQAASAAAVLLAAGAPGKRAVLPNSRVLI 132

Query: 138 HQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+     GQ SD+E  A +I +++R +     ++ GKT E++    DRD I++A EA 
Sbjct: 133 HQPATQGTQGQVSDLEIQAAEIERMRRLMETTLAEHTGKTAEQIRIDTDRDKILTAEEAL 192

Query: 197 DWGVVDKVLMSRI 209
           ++G+VD+V   R 
Sbjct: 193 EYGIVDQVFDYRK 205


>gi|283457917|ref|YP_003362519.1| protease subunit of ATP-dependent Clp protease [Rothia mucilaginosa
           DY-18]
 gi|283133934|dbj|BAI64699.1| protease subunit of ATP-dependent Clp protease [Rothia mucilaginosa
           DY-18]
          Length = 229

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 98/194 (50%), Positives = 143/194 (73%), Gaps = 2/194 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++RI+F+  Q++D  A  I AQLL LEA++P+++I+L
Sbjct: 23  VLPSFEERTPYGYKRQDPYAKLFEDRIIFLGTQVDDASADDIMAQLLVLEAQDPERDITL 82

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQFI+P I T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 83  YINSPGGSFTAMTAIYDTMQFIRPEIQTVCLGQAASAAAVLLAAGTPGKRLALPNARVLI 142

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SG   GQASDIE HA ++++++    +    + GKTYEEV+++++RD+I++A+ A
Sbjct: 143 HQPALSGQQGGQASDIEIHANEVMRMREWTAQTLALHSGKTYEEVDRSIERDNILTAAAA 202

Query: 196 CDWGVVDKVLMSRI 209
            ++G+VDKVL SR 
Sbjct: 203 LEYGLVDKVLESRK 216


>gi|325066964|ref|ZP_08125637.1| Endopeptidase Clp [Actinomyces oris K20]
          Length = 224

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 93/212 (43%), Positives = 141/212 (66%), Gaps = 6/212 (2%)

Query: 2   SFEGCAKK---DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATL 58
            FE  A++     +  +  ++P   E+T  G +  D Y++L ++RIVF+  Q++D  A  
Sbjct: 7   YFEAIARQAGAMPQARY--VLPQFEERTAYGFKRQDPYAKLFEDRIVFMGVQVDDASADD 64

Query: 59  ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLL 118
           I AQLL LE+++P   I++YINSPGG  TA  AIYDTMQ+IKP + T C+GQAAS  ++L
Sbjct: 65  IMAQLLVLESQDPDGLITMYINSPGGSFTALTAIYDTMQYIKPQVQTVCLGQAASAAAVL 124

Query: 119 LSAGEKGMRFALPNARILLHQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTY 177
           L+AG +G R ALPNAR+L+HQP+     GQASDIE  A +I +++  L +    + G+  
Sbjct: 125 LAAGSEGKRLALPNARVLIHQPAMEGVQGQASDIEIVANEIDRMRSWLEDTLAAHTGRDR 184

Query: 178 EEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           E++   L+RD I++A++A ++G+VD+VL SR 
Sbjct: 185 EKIHADLERDKILTAADAKEYGIVDQVLTSRK 216


>gi|227874920|ref|ZP_03993072.1| endopeptidase Clp [Mobiluncus mulieris ATCC 35243]
 gi|269976478|ref|ZP_06183463.1| Clp protease [Mobiluncus mulieris 28-1]
 gi|306818244|ref|ZP_07451974.1| ATP-dependent Clp protease proteolytic subunit [Mobiluncus mulieris
           ATCC 35239]
 gi|227844497|gb|EEJ54654.1| endopeptidase Clp [Mobiluncus mulieris ATCC 35243]
 gi|269935279|gb|EEZ91828.1| Clp protease [Mobiluncus mulieris 28-1]
 gi|304648983|gb|EFM46278.1| ATP-dependent Clp protease proteolytic subunit [Mobiluncus mulieris
           ATCC 35239]
          Length = 230

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 87/193 (45%), Positives = 135/193 (69%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++RIVF+  Q++D+ A  + AQLL LE+++P   I++
Sbjct: 34  ILPTFEERTAYGYKRQDPYAKLFEDRIVFLGEQVDDNSADDVMAQLLVLESQDPDSLITM 93

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+IKP I T C+GQAAS  ++LL+ G  G R ALPNAR+L+
Sbjct: 94  YINSPGGSFTAMTAIYDTMQYIKPEIQTVCLGQAASAAAVLLAGGSPGKRLALPNARVLI 153

Query: 138 HQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+     GQA+D+   A++I +++  L E   K+ G+T E++ + +DRD I++A++A 
Sbjct: 154 HQPAIQGAQGQATDLAIIAEEIDRMRAWLEETLSKHSGRTLEQMHEDIDRDKILTAAQAK 213

Query: 197 DWGVVDKVLMSRI 209
           ++G++D+VL  R 
Sbjct: 214 EYGLIDQVLSPRK 226


>gi|255325481|ref|ZP_05366583.1| Clp protease [Corynebacterium tuberculostearicum SK141]
 gi|311741273|ref|ZP_07715097.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|255297419|gb|EET76734.1| Clp protease [Corynebacterium tuberculostearicum SK141]
 gi|311303443|gb|EFQ79522.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 207

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 83/204 (40%), Positives = 136/204 (66%), Gaps = 3/204 (1%)

Query: 7   AKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
             +     +  ++P  +EQ+ +G +  + YS+L +ERI+F+  Q++D  A  I AQLL L
Sbjct: 3   QSQMPSSRY--VLPSFIEQSAQGTKETNPYSKLFEERIIFLGTQVDDTSANDIMAQLLVL 60

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E+++P ++I++YINSPGG  TA MAIYDTM++++P + T C+GQAAS  ++LL+AG  G 
Sbjct: 61  ESQDPDRDITMYINSPGGSFTALMAIYDTMRYVRPDVQTVCLGQAASAAAVLLAAGAPGK 120

Query: 127 RFALPNARILLHQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
           R ALPN+R+L+HQP+     GQ SD+E  A +I ++++ +     ++ G+T E++    D
Sbjct: 121 RAALPNSRVLIHQPATQGTQGQVSDLEIQAAEIERMRKLMETTLSEHTGRTAEQIRIDTD 180

Query: 186 RDHIMSASEACDWGVVDKVLMSRI 209
           RD I++A EA ++G++D V   R 
Sbjct: 181 RDKILTAQEAVEYGIIDTVFDYRK 204


>gi|119025605|ref|YP_909450.1| ATP-dependent Clp protease proteolytic subunit 2 [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118765189|dbj|BAF39368.1| ATP-dependent Clp protease proteolytic subunit 2 [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 206

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 90/204 (44%), Positives = 136/204 (66%), Gaps = 1/204 (0%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
                 +P++  +      +  I++RLLK+RI+++  +++D MA  ICAQ+L L AE+P+
Sbjct: 2   SNLSAPLPVMAGEDMPAGPTDPIFNRLLKDRIIWMGEEVKDEMANRICAQMLMLAAEDPK 61

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K+I LYINSPGG +TAGMAIYDTMQ I+P ++T  +G  ASMG  LLS+G KG RF   +
Sbjct: 62  KDIWLYINSPGGSITAGMAIYDTMQLIEPDVATVGLGMCASMGQFLLSSGTKGKRFLTSH 121

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           AR+L+HQPSGG  G A+D+  +A+ I+ +K+ ++E+  +  G T EE+ +  + DH  +A
Sbjct: 122 ARVLMHQPSGGIGGTATDVRINAELIMDMKKTMSELTAEQTGHTVEEIYRDNEYDHWFTA 181

Query: 193 SEACDWGVVDKVLMSRIDIEEKSK 216
            EA ++G VDK L+S  D    +K
Sbjct: 182 QEALEYGFVDK-LVSTHDTMSATK 204


>gi|184200755|ref|YP_001854962.1| ATP-dependent Clp protease proteolytic subunit [Kocuria rhizophila
           DC2201]
 gi|183580985|dbj|BAG29456.1| ATP-dependent Clp protease proteolytic subunit [Kocuria rhizophila
           DC2201]
          Length = 220

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 90/194 (46%), Positives = 135/194 (69%), Gaps = 2/194 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G R  + Y++L ++RI+F+  Q++D  A  I AQLL LE+++P ++I++
Sbjct: 17  VIPDFEERTPYGYRRQNPYTKLFEDRIIFLGVQVDDTSADDIMAQLLVLESQDPDRDITM 76

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+I+P I T C+GQAAS  S+LL+ G  G R ALPNAR+L+
Sbjct: 77  YINSPGGSFTAMTAIYDTMQYIRPEIQTVCLGQAASAASVLLAGGTPGKRLALPNARVLI 136

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+  G   GQASDIE  A +I++++  L E    +  K  E++ + ++RD I++A EA
Sbjct: 137 HQPAMEGQGGGQASDIEIQANEIMRMRTWLEETMALHTNKNVEDINRDIERDKILTAKEA 196

Query: 196 CDWGVVDKVLMSRI 209
            ++G++D+VL SR 
Sbjct: 197 QEYGIIDQVLDSRK 210


>gi|120404993|ref|YP_954822.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           vanbaalenii PYR-1]
 gi|119957811|gb|ABM14816.1| ATP-dependent Clp protease proteolytic subunit ClpP / ClpP2
           peptidase, Serine peptidase, MEROPS family S14
           [Mycobacterium vanbaalenii PYR-1]
          Length = 212

 Score =  218 bits (555), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 85/194 (43%), Positives = 132/194 (68%), Gaps = 2/194 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +E ++ G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE+ +P ++I++
Sbjct: 13  ILPSFIEHSSFGVKESNPYNKLFEERIIFLGVQVDDASANDIMAQLLVLESLDPDRDITM 72

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++  I T C+GQAAS  ++LL+AG  G R ALPNARIL+
Sbjct: 73  YINSPGGSFTSLMAIYDTMQYVRADIQTVCLGQAASAAAVLLAAGTPGKRMALPNARILI 132

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+  G   GQ SD+E  A +I +++  + E   ++ GK   ++ K  DRD I++A +A
Sbjct: 133 HQPALGGVIQGQFSDLEIQAAEIERMRTLMEETLARHTGKDAAQIRKDTDRDKILTAEQA 192

Query: 196 CDWGVVDKVLMSRI 209
            ++G++D VL  R 
Sbjct: 193 KEYGIIDTVLEYRK 206


>gi|119717698|ref|YP_924663.1| ClpP2 peptidase. Serine peptidase. MEROPS family S14 [Nocardioides
           sp. JS614]
 gi|119538359|gb|ABL82976.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nocardioides
           sp. JS614]
          Length = 206

 Score =  218 bits (555), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 87/190 (45%), Positives = 130/190 (68%), Gaps = 1/190 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P   E+T+ G R  D Y++L ++RI+++   I D +A  + AQLL L++ NP ++IS+Y
Sbjct: 8   IPQWEERTSYGFRRIDPYAKLFEDRIIYLGTPISDDVANAVIAQLLCLQSMNPDQDISIY 67

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TA  AIYDTM+FIKP + T C+GQAAS  ++LL+AG  G R ALPN+RIL+H
Sbjct: 68  INSPGGSFTALTAIYDTMKFIKPDVQTVCIGQAASAAAILLAAGTPGKRLALPNSRILIH 127

Query: 139 QPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP      GQ SDIE  A +I++++  L ++   + G++ EEV   ++RD I++A  A +
Sbjct: 128 QPYTEGTFGQTSDIEIQANEILRMRELLEKMISDHSGRSIEEVSHDIERDKILTAEGAVE 187

Query: 198 WGVVDKVLMS 207
           +G++D VL S
Sbjct: 188 YGLIDAVLES 197


>gi|330469649|ref|YP_004407392.1| endopeptidase Clp [Verrucosispora maris AB-18-032]
 gi|328812620|gb|AEB46792.1| endopeptidase Clp [Verrucosispora maris AB-18-032]
          Length = 220

 Score =  218 bits (555), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 88/194 (45%), Positives = 137/194 (70%), Gaps = 1/194 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T+ G +  + Y++L ++RI+F+  Q++D  A  + AQLL LE  +P ++I +
Sbjct: 18  VLPSFVERTSYGVKESNPYNKLFEDRIIFLGVQVDDASANDVMAQLLTLEGTDPDRDIIM 77

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+++P I T C+GQAAS  ++LL+AG  G R ALPN+RI++
Sbjct: 78  YINSPGGSFTAMTAIYDTMQYVRPDIQTVCLGQAASAAAVLLAAGTPGKRMALPNSRIII 137

Query: 138 HQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+     GQ SDIE  A++I++++ +L E+  ++C +  E+V K +DRD IM+A E+ 
Sbjct: 138 HQPATEGGYGQGSDIEIQAREILRMRTQLEEMLSRHCNRPIEKVRKDIDRDKIMTAEESR 197

Query: 197 DWGVVDKVLMSRID 210
           ++G+VD +L SR  
Sbjct: 198 EYGLVDTILSSRKK 211


>gi|329946415|ref|ZP_08293982.1| endopeptidase Clp [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328527391|gb|EGF54389.1| endopeptidase Clp [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 224

 Score =  218 bits (555), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 94/212 (44%), Positives = 140/212 (66%), Gaps = 6/212 (2%)

Query: 2   SFEGCAKK---DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATL 58
            FE  A++     +  +  ++P   E+T  G +  D Y++L ++RIVF+  Q++D  A  
Sbjct: 7   YFEAVARQAGAMPQARY--VLPQFEERTAYGFKRQDPYAKLFEDRIVFMGVQVDDASADD 64

Query: 59  ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLL 118
           I AQLL LE+++P   I++YINSPGG  TA  AIYDTMQ+IKP + T C+GQAAS  ++L
Sbjct: 65  IMAQLLVLESQDPDGLITMYINSPGGSFTALTAIYDTMQYIKPQVQTVCLGQAASAAAVL 124

Query: 119 LSAGEKGMRFALPNARILLHQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTY 177
           L+AG +G R ALPNAR+L+HQP+     GQASDIE  A +I +++  L +    + G+  
Sbjct: 125 LAAGSEGKRLALPNARVLIHQPAMEGMQGQASDIEIVADEIDRMRSWLEDTLAAHTGQDR 184

Query: 178 EEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           E++   L+RD I++A+ A D+G+VD+VL SR 
Sbjct: 185 EKIHADLERDKILTAAAAKDYGIVDQVLTSRK 216


>gi|269795730|ref|YP_003315185.1| ATP-dependent Clp protease proteolytic subunit ClpP [Sanguibacter
           keddieii DSM 10542]
 gi|269097915|gb|ACZ22351.1| ATP-dependent Clp protease proteolytic subunit ClpP [Sanguibacter
           keddieii DSM 10542]
          Length = 232

 Score =  218 bits (555), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 91/194 (46%), Positives = 131/194 (67%), Gaps = 2/194 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           + P   E+T  G +  D YS+L ++RI+F+  Q++D  A  + AQLL LE++ P ++I L
Sbjct: 32  IFPQFEERTAYGIKRQDPYSKLFEDRIIFLGVQVDDASADDVMAQLLVLESQEPNRDIIL 91

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+I   + T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 92  YINSPGGSFTAMTAIYDTMQYITSQVQTVCLGQAASAAAVLLAAGTPGKRLALPNARVLI 151

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+  GG   QASDIE HA ++++++  L      + G+  E+V K ++RD I+SA +A
Sbjct: 152 HQPAMEGGNYAQASDIEIHANELIRMREWLESTLALHSGRDVEQVRKDIERDKILSAQQA 211

Query: 196 CDWGVVDKVLMSRI 209
            D+G+VD +L SR 
Sbjct: 212 VDYGLVDSILESRK 225


>gi|166235663|gb|ABY85573.1| ATP-dependent protease proteolytic subunit [Silene sorensenis]
          Length = 196

 Score =  218 bits (555), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 74/189 (39%), Positives = 120/189 (63%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     D+Y+RL +ER++F+  +++  ++  +   +++L  E+  K++ 
Sbjct: 5   VPKVPFRSPGEEDASWVDVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V +G+AIYDTMQF++P + T CMG AASMGS +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVISGVAIYDTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  L  +YV+  GK    V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQTGEFILEAEELLKLRETLTRVYVQRTGKPIWVVSEDMERDVFMSAAEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGIVDLV 193


>gi|302869359|ref|YP_003837996.1| endopeptidase Clp [Micromonospora aurantiaca ATCC 27029]
 gi|315504166|ref|YP_004083053.1| endopeptidase clp [Micromonospora sp. L5]
 gi|302572218|gb|ADL48420.1| Endopeptidase Clp [Micromonospora aurantiaca ATCC 27029]
 gi|315410785|gb|ADU08902.1| Endopeptidase Clp [Micromonospora sp. L5]
          Length = 220

 Score =  218 bits (555), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 88/194 (45%), Positives = 137/194 (70%), Gaps = 1/194 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T+ G +  + Y++L ++RI+F+  Q++D  A  + AQLL LE  +P ++I +
Sbjct: 18  VLPSFVERTSYGMKESNPYNKLFEDRIIFLGVQVDDASANDVMAQLLTLEGTDPDRDIIM 77

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+++P I T C+GQAAS  ++LLSAG  G R ALPN+RI++
Sbjct: 78  YINSPGGSFTAMTAIYDTMQYVRPDIQTVCLGQAASAAAVLLSAGTPGKRMALPNSRIII 137

Query: 138 HQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+     GQ SDIE  A++I++++ +L ++  ++C +  E+V K +DRD IM+A E+ 
Sbjct: 138 HQPATEGGYGQGSDIEIQAREILRMRTQLEDMLSRHCNRPIEQVRKDIDRDKIMTAEESK 197

Query: 197 DWGVVDKVLMSRID 210
           ++G+VD +L SR  
Sbjct: 198 EYGLVDTILTSRKK 211


>gi|290489476|gb|ADD31122.1| clp protease proteolytic subunit protein [Staphylea colchica]
          Length = 196

 Score =  218 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 76/189 (40%), Positives = 117/189 (61%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRG--ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  Q          DIY+RL +ER++F+   ++  ++  + A +++L  E+  K++ 
Sbjct: 5   VPRVPFQLPGEGFVSWIDIYNRLYRERLLFLGQMVDTVISNHLIALMVYLTLESDTKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYDTMQF++P + T CMG AASMGS LL  G+   R A P+AR++
Sbjct: 65  LFINSPGGWVMPGIAIYDTMQFVRPDVQTICMGFAASMGSFLLVGGKITKRIAFPHARVM 124

Query: 137 LHQPSGGFSG-QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP+  F G Q  +    A++++K++  +  IY +  GK    V + ++RD  MSA+EA
Sbjct: 125 IHQPAAAFYGAQTGEFVLEAEELLKLREIMTSIYAQRTGKPLWVVSEDMERDTFMSATEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGLVDLV 193


>gi|159161186|ref|YP_001542472.1| clp protease proteolytic subunit [Ceratophyllum demersum]
 gi|148508469|gb|ABQ81476.1| clp protease proteolytic subunit [Ceratophyllum demersum]
 gi|227481143|emb|CAP62522.1| ATP-dependent protease proteolytic subunit [Ceratophyllum demersum]
          Length = 202

 Score =  218 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 77/189 (40%), Positives = 118/189 (62%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     DIY+RL +ER++F+  +I+  M+  I   +++L  E+  K++ 
Sbjct: 5   VPKVPFRSPGEEDAVWVDIYNRLYRERLLFLGQEIDSEMSNQIVGLMVYLSIEDDTKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+A+YDTMQF+ P + T CMG AASMGS +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGIALYDTMQFVPPDVHTICMGLAASMGSFVLVGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  QA +    A++++K++  L  +YV+  G     V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQAGEFILEAEELLKLRETLTRVYVQRTGNPLWVVSEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGIVDLV 193


>gi|284030229|ref|YP_003380160.1| endopeptidase Clp [Kribbella flavida DSM 17836]
 gi|283809522|gb|ADB31361.1| Endopeptidase Clp [Kribbella flavida DSM 17836]
          Length = 203

 Score =  218 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 82/191 (42%), Positives = 133/191 (69%), Gaps = 1/191 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            +P   E+T+ G R  D Y++L ++RI+F+   I D +A  + AQLL L++ +  ++IS+
Sbjct: 4   FIPQWEERTSYGMRRIDPYTKLFEDRIIFLGTPITDEIANAVMAQLLCLQSMDSDRDISI 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDT+++IKP + T C+GQAAS  ++LL+AG  G R ALPN+RI++
Sbjct: 64  YINSPGGSFTALTAIYDTIRYIKPDVQTVCLGQAASAAAVLLAAGTPGKRLALPNSRIII 123

Query: 138 HQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+     GQ+SDIE  A +I++++  L ++  +  GK++EEV + ++RD  ++A +A 
Sbjct: 124 HQPATEGTYGQSSDIEIQANEILRLRALLEKMLAEASGKSHEEVSRDIERDKFLTADQAI 183

Query: 197 DWGVVDKVLMS 207
           ++G++D VL +
Sbjct: 184 EYGLIDDVLQT 194


>gi|194212522|ref|XP_001496091.2| PREDICTED: similar to ClpP caseinolytic peptidase, ATP-dependent,
           proteolytic subunit homolog (E. coli) [Equus caballus]
          Length = 298

 Score =  218 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 89/158 (56%), Positives = 127/158 (80%)

Query: 50  QIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMG 109
           QI+D +A+L+ AQLLFL++E+ +K I +YINSPGGVVT+G+AIYDTMQ+I  PI T+C+G
Sbjct: 112 QIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTSGLAIYDTMQYILNPICTWCVG 171

Query: 110 QAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIY 169
           QAASMGSLLL+AG  GMR +LPN+RI++HQPSGG  GQA+DI   A++I+K+K++L  IY
Sbjct: 172 QAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYSIY 231

Query: 170 VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
            K+  ++ + +E  ++RD  MS  EA ++G++DKVL+ 
Sbjct: 232 AKHTKQSLQVIESVMERDRYMSPMEAQEFGILDKVLVH 269


>gi|290489470|gb|ADD31119.1| clp protease proteolytic subunit protein [Oxalis latifolia]
          Length = 195

 Score =  217 bits (554), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 77/189 (40%), Positives = 120/189 (63%), Gaps = 4/189 (2%)

Query: 19  VPMVVEQTN--RGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +T   R +   DIY+RL +ER++F+   ++  ++  + A +L+L +   +K++ 
Sbjct: 5   VPKVPFRTPGYRRKSWIDIYNRLYRERVLFLGQGVDSTISNQLIALMLYL-SHENEKDLY 63

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            +INSPGG V  G+AIYDTMQF++P I T CMG AASMGS LL  G    R A P+AR++
Sbjct: 64  FFINSPGGWVIPGIAIYDTMQFVRPDIQTICMGFAASMGSFLLVGGAITKRLAFPHARVM 123

Query: 137 LHQPSG-GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP+   F GQ +++   A++++K++  L  +Y +  GK    V + ++RD  MSA+EA
Sbjct: 124 IHQPAAIFFGGQVTEVILEAEELLKLREILTRVYAQRTGKPLWVVSEDMERDVFMSATEA 183

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 184 QAHGIVDLV 192


>gi|213692576|ref|YP_002323162.1| Endopeptidase Clp [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213524037|gb|ACJ52784.1| Endopeptidase Clp [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|320458728|dbj|BAJ69349.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           longum subsp. infantis ATCC 15697]
          Length = 207

 Score =  217 bits (554), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 86/173 (49%), Positives = 127/173 (73%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I++RLLK+RI+++  +++D MA  ICAQLL L AE+P+K+I LYINSPGG +TAGMAIYD
Sbjct: 24  IFNRLLKDRIIWMGEEVKDDMANRICAQLLMLAAEDPKKDIWLYINSPGGSITAGMAIYD 83

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ I+P ++T  +G  ASMG  LLS+G KG R+   +AR+L+HQPSGG  G A+D+  +
Sbjct: 84  TMQLIEPDVATVGLGMCASMGQFLLSSGTKGKRYLTSHARVLMHQPSGGIGGTATDVCIN 143

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+ I+ +K+ ++E+  +  G T EE+ +  + DH  +A EA D+G VDK++ +
Sbjct: 144 AELIMDMKKTMSELTAEQTGHTLEEIYRDNEYDHWFTAQEALDYGFVDKLVTT 196


>gi|134097947|ref|YP_001103608.1| ATP-dependent Clp protease proteolytic subunit [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291009143|ref|ZP_06567116.1| ATP-dependent Clp protease proteolytic subunit [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133910570|emb|CAM00683.1| ATP-dependent Clp protease proteolytic subunit 2 [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 210

 Score =  217 bits (554), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 84/193 (43%), Positives = 137/193 (70%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T  G +  + Y++L +ERIVF+  Q++D  A  + AQLLFLE+++P +EI +
Sbjct: 12  VLPSFVERTAYGVKESNPYNKLFEERIVFLGVQVDDASANDVMAQLLFLESDDPDREIQI 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA MAIYDT+Q+++P + T C+GQAAS  +++L+AG KG R ALPN+R+L+
Sbjct: 72  YINSPGGSFTALMAIYDTIQYVRPDVRTICLGQAASAAAVILAAGTKGKRLALPNSRMLI 131

Query: 138 HQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+     GQ SD+E  A ++ +++ ++     ++  +T E+V K ++RD I++A +A 
Sbjct: 132 HQPATEGIYGQVSDLEIQAAEVQRMRDQMEATLARHTNRTQEQVRKDVERDKILTADQAV 191

Query: 197 DWGVVDKVLMSRI 209
           ++G++D+VL  R 
Sbjct: 192 EYGIIDEVLPYRK 204


>gi|158187126|gb|ABW22759.1| clp protease proteolytic subunit [Phaseolus vulgaris]
          Length = 196

 Score =  217 bits (554), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 73/189 (38%), Positives = 120/189 (63%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTN--RGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +T   R     DIY+RL +ER++F+   ++  ++  + + +++L  E   K++ 
Sbjct: 5   VPRVPFRTPGDRDASWVDIYNRLYRERLLFLGQDVDSEISNQLISLMIYLSIEKENKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+A+YDTMQF++P + T C+G AASMGS LL+ G    R A P+AR++
Sbjct: 65  LFINSPGGWVIPGIALYDTMQFVQPDVQTVCLGLAASMGSFLLAGGTITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  QA +    A++++K++  +  +YV+  GK+   + + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQAGEFILEAEELLKMRETITRVYVQRTGKSLWVISEDMERDVFMSAAEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGIVDLV 193


>gi|38234362|ref|NP_940129.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           diphtheriae NCTC 13129]
 gi|67460485|sp|Q6NFU5|CLPP1_CORDI RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|38200625|emb|CAE50321.1| ATP-dependent Clp protease proteolytic subunit 2 [Corynebacterium
           diphtheriae]
          Length = 209

 Score =  217 bits (554), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 84/210 (40%), Positives = 137/210 (65%), Gaps = 5/210 (2%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           M+  G      +  +  ++P  +EQ+  G +  + Y++L +ERI+F+  Q++D  A  I 
Sbjct: 1   MNNNGMQ--MPQARY--VLPSFIEQSAYGTKETNPYAKLFEERIIFLGTQVDDTSANDIM 56

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLL LE  +P ++I++YINSPGG  T+ MAIYDTMQ+++P + T C+GQAAS  ++LL+
Sbjct: 57  AQLLVLEGLDPDRDITMYINSPGGSFTSLMAIYDTMQYVRPDVRTVCLGQAASAAAVLLA 116

Query: 121 AGEKGMRFALPNARILLHQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
           AG  G R  LPN+R+L+HQP+     GQ SD+E  A++I +++  + +   ++ G++ E+
Sbjct: 117 AGAPGKRACLPNSRVLIHQPATQGTQGQVSDLEIQAKEIERMRTLMEQTLARHTGRSAEQ 176

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           V    DRD I++A EA ++G+VD+V   R 
Sbjct: 177 VRIDTDRDKILTAEEAVEYGIVDQVFDYRK 206


>gi|13518463|ref|NP_084822.1| ATP-dependent Clp protease proteolytic subunit [Lotus japonicus]
 gi|18202721|sp|Q9BBQ9|CLPP_LOTJA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|13359004|dbj|BAB33221.1| ATP-dependent protease subunit [Lotus japonicus]
          Length = 196

 Score =  217 bits (554), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 73/189 (38%), Positives = 121/189 (64%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     DIY+RL +ER++F+  ++   ++  +   +++L  E+ +K++ 
Sbjct: 5   VPKVPFRSPGEEDASWVDIYNRLYRERLLFLGQEVNSEISNQLIGLMVYLSIEDDKKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYDTMQF++P + T CMG AASMGS +L+ G+   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGIAIYDTMQFVQPDVQTVCMGLAASMGSFVLAGGKITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  +  +YV+  GK    V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWLVSEDMERDVFMSAAEA 184

Query: 196 CDWGVVDKV 204
             +G+VD V
Sbjct: 185 QAYGIVDLV 193


>gi|307701831|ref|ZP_07638845.1| endopeptidase Clp [Mobiluncus mulieris FB024-16]
 gi|307613089|gb|EFN92344.1| endopeptidase Clp [Mobiluncus mulieris FB024-16]
          Length = 230

 Score =  217 bits (554), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 87/193 (45%), Positives = 135/193 (69%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++RIVF+  Q++D+ A  + AQLL LE+++P   I++
Sbjct: 34  ILPTFEERTAYGYKRQDSYAKLFEDRIVFLGEQVDDNSADDVMAQLLVLESQDPDSLITM 93

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+IKP I T C+GQAAS  ++LL+ G  G R ALPNAR+L+
Sbjct: 94  YINSPGGSFTAMTAIYDTMQYIKPEIQTVCLGQAASAAAVLLAGGSPGKRLALPNARVLI 153

Query: 138 HQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+     GQA+D+   A++I +++  L E   K+ G+T E++ + +DRD I++A++A 
Sbjct: 154 HQPAIQGAQGQATDLAIIAEEIDRMRAWLEETLSKHSGRTLEQMHEDIDRDKILTAAQAK 213

Query: 197 DWGVVDKVLMSRI 209
           ++G++D+VL  R 
Sbjct: 214 EYGLIDQVLSPRK 226


>gi|270283864|ref|ZP_05965115.2| Clp protease [Bifidobacterium gallicum DSM 20093]
 gi|270277585|gb|EFA23439.1| Clp protease [Bifidobacterium gallicum DSM 20093]
          Length = 196

 Score =  217 bits (554), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 85/173 (49%), Positives = 124/173 (71%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I++RLL++RI+++  +++D MA  ICAQ+L L AE+P K+I LYINSPGG +TAGMAIYD
Sbjct: 14  IFNRLLQDRIIWMGEEVKDEMANRICAQMLMLAAEDPDKDIWLYINSPGGSITAGMAIYD 73

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ IKP ++T  +G  ASMG  LLS+G KG RF   +AR+L+HQPSGG  G  +D+  +
Sbjct: 74  TMQLIKPDVATVGIGMCASMGQFLLSSGTKGKRFLTSHARVLMHQPSGGIGGTTTDVRIN 133

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+ I+ +K+ L E+  +  G T EE+ +  + DH  +A EA ++G VDK++ +
Sbjct: 134 AELIMNMKKTLAELTAEQTGHTVEEIYRDNEYDHWFTAQEALEYGFVDKLVST 186


>gi|229817803|ref|ZP_04448085.1| hypothetical protein BIFANG_03079 [Bifidobacterium angulatum DSM
           20098]
 gi|229785592|gb|EEP21706.1| hypothetical protein BIFANG_03079 [Bifidobacterium angulatum DSM
           20098]
          Length = 207

 Score =  217 bits (553), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 84/196 (42%), Positives = 132/196 (67%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
           +     +P++  +         I++RLLK+RI+++  +++D MA  I AQ+L L AE+P+
Sbjct: 6   NNTFATLPVMAGEDAPSGPVDPIFNRLLKDRIIWMGEEVKDEMANRISAQMLMLAAEDPK 65

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K+I LYINSPGG +TAGMAIYDTMQ I+P ++T  +G  ASMG  LLS+G KG R+   +
Sbjct: 66  KDIWLYINSPGGSITAGMAIYDTMQLIEPDVATVGLGMCASMGQFLLSSGTKGKRYLTSH 125

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           AR+L+HQPSGG  G  +D+  +A+ I+ +K+ ++E+  +  G T EE+ +  + DH  +A
Sbjct: 126 ARVLMHQPSGGIGGTTTDVRINAELIMDMKKTMSELTAEQTGHTVEEIYRDNEYDHWFTA 185

Query: 193 SEACDWGVVDKVLMSR 208
            EA ++G VDK++ +R
Sbjct: 186 QEALEYGFVDKIITTR 201


>gi|166235597|gb|ABY85510.1| ATP-dependent protease proteolytic subunit [Silene littorea]
          Length = 196

 Score =  217 bits (553), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 75/189 (39%), Positives = 120/189 (63%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     D+Y+RL +ER++F+  ++E  ++  +   +++L  E+  K++ 
Sbjct: 5   VPKVPFRSPGEEDASWVDVYNRLYRERLLFLGQEVESEISNQLIGLMVYLSIEDDTKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYDTMQF++P + T CMG AASMGS +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGVAIYDTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  L  +YV+  GK    V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQTGEFILEAEELLKLRXTLTRVYVQRTGKPIWVVSEDMERDVFMSAAEA 184

Query: 196 CDWGVVDKV 204
             +G+VD V
Sbjct: 185 QAYGIVDLV 193


>gi|254392447|ref|ZP_05007628.1| ATP-dependent Clp protease proteolytic subunit 2 [Streptomyces
           clavuligerus ATCC 27064]
 gi|294812617|ref|ZP_06771260.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           clavuligerus ATCC 27064]
 gi|326440935|ref|ZP_08215669.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           clavuligerus ATCC 27064]
 gi|197706115|gb|EDY51927.1| ATP-dependent Clp protease proteolytic subunit 2 [Streptomyces
           clavuligerus ATCC 27064]
 gi|294325216|gb|EFG06859.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           clavuligerus ATCC 27064]
          Length = 219

 Score =  217 bits (553), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 90/193 (46%), Positives = 137/193 (70%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP  VE+T++G R YD Y++L +ER++F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 20  VVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISI 79

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQF+KP I T CMGQAAS  ++LL+AG  G R ALP+AR+L+
Sbjct: 80  YINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPHARVLI 139

Query: 138 HQPSGGFSG-QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQPS      Q SD+E  A++I++++ +L E+  K+     E+V   ++RD I++A +A 
Sbjct: 140 HQPSSQTGREQLSDLEIAAKEILRMRVQLEEMLAKHSTTPIEKVRDDIERDKILTAEDAL 199

Query: 197 DWGVVDKVLMSRI 209
            +G++D+++ +R 
Sbjct: 200 AYGLIDQIVSTRK 212


>gi|290489446|gb|ADD31107.1| clp protease proteolytic subunit protein [Nelumbo nucifera]
          Length = 202

 Score =  217 bits (553), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 73/189 (38%), Positives = 118/189 (62%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     D+Y+RL +ER++F+  +++  ++  +   +++L  E+  K++ 
Sbjct: 5   VPKVPFRSPGEEDAVWVDVYNRLHRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYDTMQF+ P + T CMG AASMGS +L+ GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGIAIYDTMQFVPPDVHTICMGLAASMGSFILAGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  L  +YV+  G     V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQTGEFILEAEELLKLRETLTRVYVQRTGNPLWVVSEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGIVDLV 193


>gi|297562335|ref|YP_003681309.1| endopeptidase Clp [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
 gi|296846783|gb|ADH68803.1| Endopeptidase Clp [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
          Length = 219

 Score =  217 bits (553), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 91/193 (47%), Positives = 135/193 (69%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T+ G +  + Y++L +ERI+FV  QI+D  A  + AQL+ LE  + +++I +
Sbjct: 22  VLPSYVERTSYGVKEMNPYNKLFEERIIFVGVQIDDTSANDLMAQLITLEQLDSERDIQM 81

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQF++P I T C+GQAAS  ++LL+ G +G R ALPNARIL+
Sbjct: 82  YINSPGGSFTSLMAIYDTMQFVRPDIQTVCIGQAASAAAILLAGGTEGKRGALPNARILI 141

Query: 138 HQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+     GQASDIE  A +I +I+ +L     ++ G++ E+V K ++RD I++A EA 
Sbjct: 142 HQPATEGMHGQASDIEIQANEITRIRTQLETTLARHTGRSVEQVSKDIERDKILTAEEAK 201

Query: 197 DWGVVDKVLMSRI 209
           D+G++D VL  R 
Sbjct: 202 DYGIIDFVLPYRK 214


>gi|227503045|ref|ZP_03933094.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           accolens ATCC 49725]
 gi|306836722|ref|ZP_07469685.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           accolens ATCC 49726]
 gi|227076106|gb|EEI14069.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           accolens ATCC 49725]
 gi|304567400|gb|EFM43002.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           accolens ATCC 49726]
          Length = 207

 Score =  217 bits (553), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 82/193 (42%), Positives = 133/193 (68%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +EQ+ +G +  + YS+L +ERI+F+  Q++D  A  I AQLL LE+++P ++I++
Sbjct: 12  VLPSFIEQSAQGTKETNPYSKLFEERIIFLGTQVDDTSANDIMAQLLVLESQDPDRDITM 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA MAIYDTM++++P + T C+GQAAS  ++LL+AG  G R ALPN+R+L+
Sbjct: 72  YINSPGGSFTALMAIYDTMRYVRPDVQTVCLGQAASAAAVLLAAGAPGKRAALPNSRVLI 131

Query: 138 HQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+     GQ SD+E  A +I +++  +     ++ G+T E++    DRD I++A +A 
Sbjct: 132 HQPATQGTQGQVSDLEIQAAEIERMRTLMENTLAEHTGRTAEQIRIDTDRDKILTAEDAV 191

Query: 197 DWGVVDKVLMSRI 209
           ++G++D V   R 
Sbjct: 192 EYGIIDTVFEYRK 204


>gi|168043511|ref|XP_001774228.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674496|gb|EDQ61004.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 243

 Score =  217 bits (553), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 83/186 (44%), Positives = 123/186 (66%), Gaps = 1/186 (0%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P  +EQ  R +   D  + LL++RI+F+  Q++D  A LI +Q+L L+A++P ++I L+I
Sbjct: 7   PGGIEQFARLQ-DLDPGTMLLQQRILFLGSQVDDFSADLIISQMLLLDAQDPTRDIKLFI 65

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG VTAGM IYD M+  K  +ST C G AASMG+ LL+AG KG R+ +PNAR+++HQ
Sbjct: 66  NSPGGSVTAGMGIYDAMKLCKADVSTVCFGLAASMGAFLLTAGTKGKRYCMPNARVMIHQ 125

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG  G A D     ++++  K +L +I  +  G+    VE   DRD+ M+A EA ++G
Sbjct: 126 PLGGAGGTAIDGALQVREMMFHKYKLQKIMSRLTGQPEARVEADTDRDNFMNAWEAMEYG 185

Query: 200 VVDKVL 205
           +VD V+
Sbjct: 186 LVDGVI 191


>gi|320534809|ref|ZP_08035228.1| Clp protease [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320132988|gb|EFW25517.1| Clp protease [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 224

 Score =  217 bits (553), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 89/193 (46%), Positives = 133/193 (68%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++RIVF+  Q++D  A  I AQLL LE+++P   I++
Sbjct: 24  VLPQFEERTAYGFKRQDPYAKLFEDRIVFMGVQVDDASADDIMAQLLVLESQDPDGLITM 83

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+IKP + T C+GQAAS  ++LL+AG +G R ALPNAR+L+
Sbjct: 84  YINSPGGSFTALTAIYDTMQYIKPQVQTVCLGQAASAAAVLLAAGSEGKRLALPNARVLI 143

Query: 138 HQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+     GQASDIE  A ++ +++  L +    + G+  E++   L+RD I++A+ A 
Sbjct: 144 HQPAMEGMQGQASDIEIVANEMDRMRSWLEDTLAAHTGQDREKIHADLERDKILTAAAAK 203

Query: 197 DWGVVDKVLMSRI 209
           ++G+VD+VL SR 
Sbjct: 204 EYGIVDQVLTSRK 216


>gi|91214166|ref|YP_538790.1| ATP-dependent Clp protease proteolytic subunit [Glycine max]
 gi|122202485|sp|Q2PMR0|CLPP_SOYBN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|83595767|gb|ABC25148.1| clp protease proteolytic subunit [Glycine max]
          Length = 196

 Score =  217 bits (553), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 74/189 (39%), Positives = 120/189 (63%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     DIY+RL +ER++F+  +++  ++  + + +++L  E   K++ 
Sbjct: 5   VPRVPFRSPGEEDASWVDIYNRLYRERLLFLGQEVDSEISNQLISLMVYLSIEEENKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYDTMQF++P + T CMG AASMGS LL+ GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGIAIYDTMQFVQPDVQTVCMGLAASMGSFLLAGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  +  +YV+  GK    + + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQTGEFILEAEELLKMRETITRVYVQRTGKPLWVISEDMERDVFMSAAEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGIVDLV 193


>gi|166235861|gb|ABY85762.1| ATP-dependent protease proteolytic subunit [Silene aegyptiaca]
 gi|166235883|gb|ABY85783.1| ATP-dependent protease proteolytic subunit [Silene atocioides]
          Length = 196

 Score =  217 bits (553), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 74/189 (39%), Positives = 119/189 (62%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     D+Y+RL +ER++F+  +++  ++  +   +++L  E+  K++ 
Sbjct: 5   VPKVPFRSPGEEDASWVDVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYDTMQF++P + T CMG AASMGS +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGVAIYDTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  L  +YV+  GK    V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQTGEFILEAEELLKLRETLTRVYVQRTGKPIWVVSEDMERDVFMSAAEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGIVDLV 193


>gi|119492479|ref|XP_001263605.1| Clp protease, putative [Neosartorya fischeri NRRL 181]
 gi|119411765|gb|EAW21708.1| Clp protease, putative [Neosartorya fischeri NRRL 181]
          Length = 175

 Score =  217 bits (553), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 91/160 (56%), Positives = 123/160 (76%), Gaps = 4/160 (2%)

Query: 55  MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASM 114
           M+  I AQLLFLEA+NPQK I LYINSPGG VTAG+AIYDTM +I  P+ST C+GQAASM
Sbjct: 1   MSASIVAQLLFLEADNPQKPIHLYINSPGGSVTAGLAIYDTMTYIASPVSTICVGQAASM 60

Query: 115 GSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKN-C 173
           GSLLL  G  G R+ LP++ I++HQPSGG+ GQASDI  HA++I++++ +LN+IY ++  
Sbjct: 61  GSLLLCGGNPGKRYCLPHSSIMIHQPSGGYFGQASDIAIHAKEILRVRSQLNKIYQRHLT 120

Query: 174 GK---TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           GK   + EE+EK ++RD+ M A EA + G+VD++L  R+ 
Sbjct: 121 GKKVLSLEEIEKLMERDYFMGAQEALEMGIVDEILDRRVK 160


>gi|114329994|ref|YP_740675.1| clp protease proteolytic subunit [Nandina domestica]
 gi|122165937|sp|Q09FT6|CLPP_NANDO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|114054496|gb|ABI49889.1| clp protease proteolytic subunit [Nandina domestica]
          Length = 202

 Score =  217 bits (553), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 73/189 (38%), Positives = 117/189 (61%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     D+Y+RL +ER++F+  +++  ++  +   +++L  E+  K++ 
Sbjct: 5   VPKVPFRSPGEEDAVWVDVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDETKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYDTMQF+ P + T CMG AASMGS +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGVAIYDTMQFVPPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  L  +YV+  G     V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQTGEFVLEAEELLKLRETLTRVYVQRTGNPLWVVSEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGIVDLV 193


>gi|52220834|ref|YP_086990.1| ATP-dependent Clp protease proteolytic subunit [Panax ginseng]
 gi|68052101|sp|Q68RY2|CLPP_PANGI RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|51235337|gb|AAT98533.1| ATP-dependent protease; catalytic subunit [Panax ginseng]
          Length = 196

 Score =  217 bits (553), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 75/189 (39%), Positives = 122/189 (64%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGERSY--DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E +Y  DIY+RL +ER++F+   +   ++  +   +++L  E+  K++ 
Sbjct: 5   VPKVPFRSPGEEDAYWVDIYNRLYRERLLFLGQPVASEISNQLIGLMVYLSIEDDTKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L++NSPGG V  G+AIYDTMQF++P + T CMG AASMGS +L+ GE   R A P+AR++
Sbjct: 65  LFMNSPGGWVLPGIAIYDTMQFVRPDVHTICMGLAASMGSFILAGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  +  +YV+  GK +  V + L+RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQTGEFVLEAEELLKLRETITRVYVQKTGKPFWVVSEDLERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
             +G+VD V
Sbjct: 185 QAYGIVDLV 193


>gi|332044615|gb|EGI80809.1| Endopeptidase Clp [Lacinutrix algicola 5H-3-7-4]
          Length = 181

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 90/182 (49%), Positives = 128/182 (70%), Gaps = 3/182 (1%)

Query: 25  QTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG 84
           +T + + + D  S+LL ER VF+ G ++D  A  +  +LL+L++    K+I+LYINSPGG
Sbjct: 3   KTTKAQDAID--SKLLDERKVFLWGMVDDKSAKHVIDRLLYLDSL-ETKDITLYINSPGG 59

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
            VT+G A+YDT++ +K  +ST C G AASMGS+LLS G KG RF  P+AR+++HQPSGG 
Sbjct: 60  YVTSGFAMYDTIKSLKSDVSTVCTGLAASMGSILLSVGTKGKRFIQPHARVMIHQPSGGA 119

Query: 145 SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            GQASDIE  AQ+I+K K    +I  +NCG+ +E+V K  +RDH M A E+ D+G+VD +
Sbjct: 120 RGQASDIEITAQEILKTKELSAKILAENCGQDFEKVMKDFNRDHWMGAEESKDYGIVDGI 179

Query: 205 LM 206
           L 
Sbjct: 180 LD 181


>gi|297194375|ref|ZP_06911773.1| ATP-dependent Clp protease proteolytic subunit 2 [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197720967|gb|EDY64875.1| ATP-dependent Clp protease proteolytic subunit 2 [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 222

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 90/193 (46%), Positives = 135/193 (69%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP  VE+T++G R YD Y++L +ER++F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 23  VVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISI 82

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQF+KP I T CMGQAAS  ++LL+AG  G R ALP+AR+L+
Sbjct: 83  YINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPHARVLI 142

Query: 138 HQPSGGFSG-QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQPS      Q SD+E  A +I++++ +L E+  K+     E++   ++RD I++A  A 
Sbjct: 143 HQPSSQTGREQLSDLEIAANEILRMREQLEEMLAKHSTTPIEKIRDDIERDKILTADGAL 202

Query: 197 DWGVVDKVLMSRI 209
            +G+VD+++ +R 
Sbjct: 203 AYGLVDQIVSTRK 215


>gi|290489458|gb|ADD31113.1| clp protease proteolytic subunit protein [Cornus florida]
          Length = 196

 Score =  217 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 73/189 (38%), Positives = 120/189 (63%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     D+Y+RL +ER++F+  +++  ++  +   +++L  E+  K++ 
Sbjct: 5   VPKVPFRSPGEEDASWVDVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AI+DTMQF++P + T CMG AASMGS +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGIAIFDTMQFVQPDVHTICMGMAASMGSFILVGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  L  +YV+  GK    V + ++RD  MSA+EA
Sbjct: 125 IHQPASAYYEAQTGEFILEAEELLKLRETLTRVYVQRTGKPLWVVSEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
             +G+VD V
Sbjct: 185 QAYGIVDLV 193


>gi|308235223|ref|ZP_07665960.1| ATP-dependent Clp protease proteolytic subunit 2 [Gardnerella
           vaginalis ATCC 14018]
 gi|311114524|ref|YP_003985745.1| endopeptidase Clp [Gardnerella vaginalis ATCC 14019]
 gi|310946018|gb|ADP38722.1| endopeptidase Clp [Gardnerella vaginalis ATCC 14019]
          Length = 203

 Score =  217 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 84/188 (44%), Positives = 132/188 (70%), Gaps = 1/188 (0%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P++ E   +      I+++LLK+RI+++  +++D  A +ICAQ+L L A++P+K+I LYI
Sbjct: 9   PIMQEGEPQNPMD-SIFNQLLKDRIIWLGSEVKDENANIICAQMLMLAAQDPKKDIWLYI 67

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG +TAGMAIYDTMQ I+P ++T  +G AASMG  LLS+G  G RF   +AR+L+HQ
Sbjct: 68  NSPGGSITAGMAIYDTMQLIEPDVATIAVGMAASMGQFLLSSGTPGKRFITSHARVLMHQ 127

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           PSGG  G A+D+  +A+ I+ +K+ L+E+  +  G T EE+ +  + DH  +A +A ++G
Sbjct: 128 PSGGVGGTATDVRINAELIMDMKKTLSELTAQQTGHTVEEIYRDNEYDHWFTAQQALEYG 187

Query: 200 VVDKVLMS 207
            VDK++ +
Sbjct: 188 FVDKIVTT 195


>gi|116786219|gb|ABK24027.1| unknown [Picea sitchensis]
          Length = 317

 Score =  217 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 76/191 (39%), Positives = 119/191 (62%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G++      + +     D+   LL++RIVF+   ++D +A  I +QLL L+A+NP K+I 
Sbjct: 87  GVIAQQTPASAQRSADGDVMGLLLRQRIVFLGSNMDDFVADAIISQLLLLDAQNPNKDIR 146

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+IN PGG + A M I+DT+Q  +  +ST   G AAS  S++L+ G KG R A+PN RI+
Sbjct: 147 LFINCPGGSINAAMGIFDTIQLCRADVSTIAFGLAASTASIVLAGGSKGKRLAMPNTRIM 206

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG SG A D+E  A++I+  K  +  I  +  G++ E+V+  +DRD  MS  EA 
Sbjct: 207 MHQPLGGASGSAIDVEIQAKEIMYHKSNVTRIISERTGRSTEQVDNDMDRDRYMSPMEAV 266

Query: 197 DWGVVDKVLMS 207
           ++G++D V+  
Sbjct: 267 EYGLIDGVIDK 277


>gi|269219684|ref|ZP_06163538.1| Clp protease [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269210926|gb|EEZ77266.1| Clp protease [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 225

 Score =  217 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 90/209 (43%), Positives = 135/209 (64%), Gaps = 3/209 (1%)

Query: 2   SFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICA 61
            F G A       +  ++P   E+T  G +  D Y++L ++RI+F+  Q++D  A  I A
Sbjct: 14  HFSGLAPAMPSARY--VLPNFEERTPYGYKRQDPYAKLFEDRIIFLGVQVDDASADDIMA 71

Query: 62  QLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSA 121
           QLL LE+++P   I++YINSPGG  TA  AIYDTMQ+IKP I T C+GQAAS  ++LL+A
Sbjct: 72  QLLVLESQDPDSPITMYINSPGGSFTALTAIYDTMQYIKPQIQTVCLGQAASAAAVLLAA 131

Query: 122 GEKGMRFALPNARILLHQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           G  G R ALPNAR+L+H+P+     GQASDI   A ++ ++   L +    + GK  +E+
Sbjct: 132 GSPGRRLALPNARVLIHEPAMEGMQGQASDIAIVADELERMNDWLCDTLSHHSGKPADEI 191

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           +  + RD I++A++A ++G+VD+VL SR 
Sbjct: 192 KNDIKRDKILTANDAKEYGLVDQVLTSRK 220


>gi|296936697|gb|ADH94369.1| photosystem II CP47 chlorophyll apoprotein [Syzygium cumini]
          Length = 196

 Score =  217 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 74/189 (39%), Positives = 119/189 (62%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     D+Y+RL +ER++F+  +++  ++  +   +++L  EN  K++ 
Sbjct: 5   VPKVPFRSPGEEDASWVDVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIENDNKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYDTMQF++P + T CMG AASMGS +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGVAIYDTMQFVQPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  +  +YV+  GK    V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGIVDLV 193


>gi|312373461|gb|EFR21200.1| hypothetical protein AND_17405 [Anopheles darlingi]
          Length = 185

 Score =  217 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 88/165 (53%), Positives = 123/165 (74%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM 108
           G + D +++LI AQLLFL++EN  K I +YINSPGG VTAG+AIYDTMQ++KPP++T+C+
Sbjct: 2   GPVHDDLSSLIVAQLLFLQSENGTKPIHMYINSPGGSVTAGLAIYDTMQYVKPPVATWCV 61

Query: 109 GQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           GQA SMGSLLL+AG  GMR +LPNARI++HQPSGG  GQA+DI+  A++I+K+K++L EI
Sbjct: 62  GQACSMGSLLLAAGAPGMRHSLPNARIMIHQPSGGAQGQATDIQIQAEEILKLKKQLTEI 121

Query: 169 YVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
           Y K+   + + +   ++RD  +S  EA   G++D VL       E
Sbjct: 122 YGKHTKTSIDVLYSKMERDTFLSPEEAQALGIIDTVLEHPPSSTE 166


>gi|328882449|emb|CCA55688.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           venezuelae ATCC 10712]
          Length = 224

 Score =  217 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 92/193 (47%), Positives = 139/193 (72%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP  VE+T++G R YD Y++L +ER++F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 25  VVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISI 84

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQF+KP I T CMGQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 85  YINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLI 144

Query: 138 HQPSGGFSG-QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQPSGG    Q SD+E  A++I++++ +L ++  K+     E++   ++RD I++A +A 
Sbjct: 145 HQPSGGTGREQLSDLEIAAREILRMRTQLEDMLAKHSSTPIEKIRDDIERDKILTAEDAL 204

Query: 197 DWGVVDKVLMSRI 209
            +G+VD+++ +R 
Sbjct: 205 AYGLVDQIVSTRK 217


>gi|317046198|ref|YP_004072487.1| ATP-dependent protease [Corynocarpus laevigata]
 gi|309252915|gb|ADO60335.1| ATP-dependent protease [Corynocarpus laevigata]
          Length = 195

 Score =  217 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 77/189 (40%), Positives = 119/189 (62%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +T   E     DIY+RL +ER++F+   ++  ++  + A +++L  E+  K++ 
Sbjct: 5   VPKVPFRTPGDEDASWIDIYNRLYRERLLFLGQAVDSEISNQLIALMVYLSTESETKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYDTMQF++P + T C+G AASMGS +L  G    R ALP+AR++
Sbjct: 65  LFINSPGGWVIPGVAIYDTMQFVRPDVQTVCLGLAASMGSFILVGGAITKRLALPHARVM 124

Query: 137 LHQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQPS  F   Q  +    A++++K++  L  +YV+  GK    V + ++RD  MSA+EA
Sbjct: 125 IHQPSSAFYEAQTGEFILEAEELLKLRETLTMVYVQRTGKPLWVVSEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGIVDLV 193


>gi|84494298|ref|ZP_00993417.1| ATP-dependent Clp protease proteolytic subunit [Janibacter sp.
           HTCC2649]
 gi|84383791|gb|EAP99671.1| ATP-dependent Clp protease proteolytic subunit [Janibacter sp.
           HTCC2649]
          Length = 219

 Score =  217 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 85/197 (43%), Positives = 136/197 (69%), Gaps = 1/197 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T+ G +  D Y++L ++RI+F+  Q++D  A  + AQL+ LE+++P ++I +
Sbjct: 22  ILPQFEERTSYGMKRTDPYTKLFEDRIIFLGVQVDDASADDVIAQLIVLESQDPDRDILM 81

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+I+P + TF +GQAAS  ++LL AG  G R+ALPNAR+L+
Sbjct: 82  YINSPGGSFTAMTAIYDTMQYIRPDVQTFVIGQAASAAAVLLGAGAPGKRYALPNARVLI 141

Query: 138 HQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+     G ASD+E  A ++++++  L +    + G+  E V K ++RD I+SA++A 
Sbjct: 142 HQPAIEGTGGMASDLEIQANEVLRMRGWLEDTIASHSGRDVELVRKDIERDKILSAAQAK 201

Query: 197 DWGVVDKVLMSRIDIEE 213
           ++G++D+VL SR    E
Sbjct: 202 EYGLIDEVLASRKATNE 218


>gi|290489466|gb|ADD31117.1| clp protease proteolytic subunit protein [Heuchera sanguinea]
          Length = 196

 Score =  216 bits (551), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 73/189 (38%), Positives = 119/189 (62%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     D+Y+RL +ER++F+  +++  ++  +   +++L  E+  K++ 
Sbjct: 5   VPKVPFRSPGEEDASWVDVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYDTMQF++P + T CMG AASMGS +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGVAIYDTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  +  +YV+  GK    V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGIVDLV 193


>gi|166235641|gb|ABY85552.1| ATP-dependent protease proteolytic subunit [Silene zawadskii]
          Length = 196

 Score =  216 bits (551), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 74/189 (39%), Positives = 120/189 (63%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     D+Y+RL +ER++F+  +++  ++  +   +++L  E+  K++ 
Sbjct: 5   VPKVPFRSPGEEDASWVDVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V +G+AIYDTMQF++P + T CMG AASMGS +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVISGVAIYDTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  L  +YV+  GK    V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQTGEFILEAEELLKLRETLTRVYVQRTGKPIWVVSEDMERDVFMSAAEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGIVDLV 193


>gi|166235619|gb|ABY85531.1| ATP-dependent protease proteolytic subunit [Silene uniflora]
 gi|166235751|gb|ABY85657.1| ATP-dependent protease proteolytic subunit [Silene cryptoneura]
 gi|166235839|gb|ABY85741.1| ATP-dependent protease proteolytic subunit [Silene schafta]
 gi|166240002|gb|ABY86529.1| ATP-dependent protease proteolytic subunit [Heliosperma alpestre]
          Length = 196

 Score =  216 bits (551), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 74/189 (39%), Positives = 119/189 (62%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     D+Y+RL +ER++F+  +++  ++  +   +++L  E+  K++ 
Sbjct: 5   VPKVPFRSPGEEDASWVDVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYDTMQF++P + T CMG AASMGS +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGVAIYDTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  L  +YV+  GK    V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQTGEFILEAEELLKLRETLTRVYVQRTGKPIWVVSEDMERDVFMSAAEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGIVDLV 193


>gi|163840395|ref|YP_001624800.1| ATP-dependent Clp protease proteolytic subunit [Renibacterium
           salmoninarum ATCC 33209]
 gi|162953871|gb|ABY23386.1| ATP-dependent endopeptidase clp proteolytic subunit [Renibacterium
           salmoninarum ATCC 33209]
          Length = 206

 Score =  216 bits (551), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 92/191 (48%), Positives = 139/191 (72%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+E+T  GERSYD++SRL+++RIVFV  +I+D +A +I AQL++LE++NP ++I+LY
Sbjct: 6   MPTVLEKTPFGERSYDVFSRLVRDRIVFVGSEIDDDVANVIMAQLIYLESDNPDEDINLY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TA MAI DTM F++P ++T CMGQAAS  ++LL+AG KG R  L ++R+LLH
Sbjct: 66  INSPGGSHTALMAILDTMDFVRPDVATVCMGQAASAAAILLAAGAKGKRSVLAHSRVLLH 125

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPS    G  +D+  HA+++ +I+ +L EI  ++ G++ E +     RD I +A EA D+
Sbjct: 126 QPSSQGRGTLADLSVHAKEMSRIRHQLEEILAEHTGQSTEILHADTSRDKIFTAQEAVDY 185

Query: 199 GVVDKVLMSRI 209
           G+ D ++ SR 
Sbjct: 186 GLADAIISSRK 196


>gi|323359781|ref|YP_004226177.1| protease subunit of ATP-dependent Clp protease [Microbacterium
           testaceum StLB037]
 gi|323276152|dbj|BAJ76297.1| protease subunit of ATP-dependent Clp protease [Microbacterium
           testaceum StLB037]
          Length = 220

 Score =  216 bits (551), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 92/210 (43%), Positives = 138/210 (65%), Gaps = 4/210 (1%)

Query: 2   SFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICA 61
           +F G A       +  ++P   E+T  G +  D Y++L ++R++F+  Q++D  A  + A
Sbjct: 5   TFGGAAAHMPSSRY--VLPQFEERTAYGYKRQDPYNKLFEDRVIFLGVQVDDASADDVMA 62

Query: 62  QLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSA 121
           QLL LE+++P ++I +YINSPGG  TA  AIYDTMQ++ P I T  +GQAAS  S+LL+A
Sbjct: 63  QLLVLESQDPDRDIIMYINSPGGSFTAMTAIYDTMQYVSPQIQTVVLGQAASAASVLLAA 122

Query: 122 GEKGMRFALPNARILLHQPSG--GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
           G  G R ALPNARIL+HQP+      GQASDIE  A +I++++  L E   ++ G+   +
Sbjct: 123 GAPGKRLALPNARILIHQPAMGEAGHGQASDIEIQAAEILRMRTWLEETMARHTGQDAAK 182

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           V K +DRD I+S+ EA ++G+VD+VL +R 
Sbjct: 183 VNKDIDRDKILSSQEAMEYGIVDQVLTTRK 212


>gi|29833643|ref|NP_828277.1| ATP-dependent Clp protease proteolytic subunit 2 [Streptomyces
           avermitilis MA-4680]
 gi|67460532|sp|Q826S4|CLPP5_STRAW RecName: Full=ATP-dependent Clp protease proteolytic subunit 5;
           AltName: Full=Endopeptidase Clp 5
 gi|29610767|dbj|BAC74812.1| putative ATP-dependent Clp protease proteolytic subunit 2
           [Streptomyces avermitilis MA-4680]
          Length = 211

 Score =  216 bits (551), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 85/193 (44%), Positives = 124/193 (64%), Gaps = 2/193 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P   E+ + G R+ D YS+LL ERIVF+   I+D  A  + AQ + LE   P ++ISLY
Sbjct: 10  LPEFTERLSTGLRTLDPYSKLLDERIVFLGTPIDDTSANDVMAQFMHLEHLAPDRDISLY 69

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  +A  A+YDTMQF+   + T C+GQAAS  ++LL+ G  G R ALP AR+L+H
Sbjct: 70  INSPGGSFSAMTAVYDTMQFVSCDVETICLGQAASAAAVLLAGGTPGKRLALPGARVLIH 129

Query: 139 QPSGGF--SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           QPS      GQASD+   A ++ + + +L E+ V++ G++ E V   ++RD I+ A  A 
Sbjct: 130 QPSLPAPVQGQASDLVIQAAELARTREQLEELLVRHTGQSPERVAADIERDKILDAPAAV 189

Query: 197 DWGVVDKVLMSRI 209
            +G+VD+V+ SR 
Sbjct: 190 AYGLVDRVVPSRK 202


>gi|119368524|ref|YP_913212.1| ATP-dependent protease proteolytic subunit [Gossypium barbadense]
 gi|125863802|sp|A0ZZ60|CLPP_GOSBA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|119224886|dbj|BAF41272.1| ATP-dependent protease proteolytic subunit [Gossypium barbadense]
          Length = 196

 Score =  216 bits (551), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 75/189 (39%), Positives = 119/189 (62%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+RL +ER++F+  +++  ++  +   +++L  EN  K++ 
Sbjct: 5   VPKVPFRNPGEEDAVWVDVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIENDTKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYDTMQF++P + T CMG AASMGS LL+ GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGVAIYDTMQFVQPDVHTICMGLAASMGSFLLAGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  L  +YV+  GK    V + ++R+  MSA+EA
Sbjct: 125 IHQPASSFYEAQTGEFILEAEELLKLRESLTRVYVQRTGKPLWVVSEDMERNVFMSATEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGIVDLV 193


>gi|28261742|ref|NP_783256.1| ATP-dependent Clp protease proteolytic subunit [Atropa belladonna]
 gi|75303626|sp|Q8S8W2|CLPP_ATRBE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|20068356|emb|CAC88069.1| ATP-dependent protease; catalytic subunit [Atropa belladonna]
          Length = 196

 Score =  216 bits (551), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 76/189 (40%), Positives = 119/189 (62%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     D+Y+RL +ER++F+   I   ++  +   +++L  E+  KE+ 
Sbjct: 5   VPKVPFRSPGEEDASWVDVYNRLYRERLLFLGQGINSEISNQLIGLMVYLSIEDETKELY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYDTMQF++P + T CMG AASMGS +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGIAIYDTMQFVRPDVHTVCMGLAASMGSFILVGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP SG +  Q  +    A++++K++  L  +YV+  GK    V + +++D  MSA+EA
Sbjct: 125 MHQPASGYYEAQTGEFVLEAEELLKLRETLTRVYVQRTGKPLWVVSEDMEKDVFMSATEA 184

Query: 196 CDWGVVDKV 204
             +G+VD V
Sbjct: 185 QAYGIVDLV 193


>gi|108802666|ref|YP_636324.1| ATP-dependent Clp protease proteolytic subunit [Eucalyptus globulus
           subsp. globulus]
 gi|122219170|sp|Q49KX3|CLPP_EUCGG RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|60460832|gb|AAX21052.1| photosystem II CP47 chlorophyll apoprotein [Eucalyptus globulus
           subsp. globulus]
          Length = 196

 Score =  216 bits (551), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 74/189 (39%), Positives = 119/189 (62%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     D+Y+RL +ER++F+  +++  ++  +   +++L  EN  K++ 
Sbjct: 5   VPKVPFRSPGEEDASWVDVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIENDNKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYDTMQF++P + T CMG AASMGS +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGVAIYDTMQFVQPDVHTICMGLAASMGSFVLVGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  +  +YV+  GK    V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGIVDLV 193


>gi|213966164|ref|ZP_03394350.1| Clp protease [Corynebacterium amycolatum SK46]
 gi|213951179|gb|EEB62575.1| Clp protease [Corynebacterium amycolatum SK46]
          Length = 209

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 85/193 (44%), Positives = 134/193 (69%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE ++ G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE  +P ++I++
Sbjct: 14  VLPSFVEHSSFGAKESNPYNKLFEERIIFLGSQVDDTAANDIMAQLLVLEGLDPDRDITM 73

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++P + T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 74  YINSPGGSFTSLMAIYDTMQYVRPDVQTVCLGQAASAAAVLLAAGAPGKRAALPNARVLI 133

Query: 138 HQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+     GQ SD+E  A +I ++++ + E   ++ G+T E++ K  DRD I++A EA 
Sbjct: 134 HQPATQGIQGQVSDLEIQANEIERMRKLMEETLARHSGRTAEQIRKDTDRDKILTAEEAV 193

Query: 197 DWGVVDKVLMSRI 209
           ++G++D+V   R 
Sbjct: 194 EYGIIDQVFEYRK 206


>gi|290489436|gb|ADD31102.1| clp protease proteolytic subunit protein [Dillenia indica]
          Length = 196

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 71/189 (37%), Positives = 120/189 (63%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     D+Y+RL +ER++F+  ++++ ++  +   +++L  E+  K++ 
Sbjct: 5   VPKVPFRSPGEEDASWVDVYNRLYRERLLFLGQEVDNEISNQLIGLMVYLSIEDDTKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYDT+QF++P + T CMG AASMGS +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGVAIYDTIQFVQPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  +  +YV+  GK    V + ++RD  MSA EA
Sbjct: 125 IHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWLVSEDMERDVFMSAREA 184

Query: 196 CDWGVVDKV 204
             +G++D V
Sbjct: 185 QAYGIIDLV 193


>gi|166201959|gb|ABY84433.1| ATP-dependent protease proteolytic subunit [Lychnis flos-jovis]
          Length = 196

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 75/189 (39%), Positives = 119/189 (62%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     D+Y+RL +ER++F+  ++E  ++  I   +++L  E+  K++ 
Sbjct: 5   VPKVPFRSPGDEDASWVDVYNRLYRERLLFLGQEVESEISNQIIGLMVYLSIEDDTKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V +G+ IYDTMQF++P + T CMG AASMGS +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGSVISGVGIYDTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  L  +YV+  GK    V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQTGEFILEAEELLKLRETLTRVYVQRTGKPIWVVSEDMERDVFMSAAEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGIVDLV 193


>gi|326771854|ref|ZP_08231139.1| Clp protease [Actinomyces viscosus C505]
 gi|326637987|gb|EGE38888.1| Clp protease [Actinomyces viscosus C505]
          Length = 224

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 93/212 (43%), Positives = 140/212 (66%), Gaps = 6/212 (2%)

Query: 2   SFEGCAKK---DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATL 58
            FE  A++     +  +  ++P   E+T  G +  D Y++L ++RIVF+  Q++D  A  
Sbjct: 7   YFEAIARQAGAMPQARY--VLPQFEERTAYGFKRQDPYAKLFEDRIVFMGVQVDDASADD 64

Query: 59  ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLL 118
           I AQLL LE+++P   I++YINSPGG  TA  AIYDTMQ+IKP + T C+GQAAS  ++L
Sbjct: 65  IMAQLLVLESQDPDGLITMYINSPGGSFTALTAIYDTMQYIKPQVQTVCLGQAASAAAVL 124

Query: 119 LSAGEKGMRFALPNARILLHQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTY 177
           L+AG +G R ALPNAR+L+HQP+     GQASDIE  A +I +++  L +    + G+  
Sbjct: 125 LAAGSEGKRLALPNARVLIHQPAMEGMQGQASDIEIVANEIDRMRSWLEDTLAAHTGRDR 184

Query: 178 EEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           E++   L+RD I++A+ A ++G+VD+VL SR 
Sbjct: 185 EKIHADLERDKILTAAAAKEYGIVDQVLTSRK 216


>gi|152968202|ref|YP_001363986.1| endopeptidase Clp [Kineococcus radiotolerans SRS30216]
 gi|151362719|gb|ABS05722.1| Endopeptidase Clp [Kineococcus radiotolerans SRS30216]
          Length = 198

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 90/189 (47%), Positives = 136/189 (71%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            +P VVE T RGER+ D++SRLL +RIVF+ G+I+D +A ++ AQL+ L +E+   EISL
Sbjct: 4   PIPHVVETTARGERTSDVFSRLLSDRIVFLHGEIDDGVANVVIAQLVHLASESSTAEISL 63

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG  TA MAIYDTMQF++P ++TFC+GQAAS  ++LL+AG  G R  L ++R+LL
Sbjct: 64  YVNSPGGSATALMAIYDTMQFVQPDVATFCVGQAASAAAVLLAAGAPGKRSVLEHSRVLL 123

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQPSGG  G A+D++  A+++++I+  +  +  ++ G   E +   LDRD ++  +EA  
Sbjct: 124 HQPSGGAQGTAADLQIQAREVLRIRSEIERVLARHTGHPVERLRADLDRDLVLPGAEAVA 183

Query: 198 WGVVDKVLM 206
           +GV D+V+ 
Sbjct: 184 YGVADRVVT 192


>gi|11466349|ref|NP_038352.1| ATP-dependent Clp protease proteolytic subunit [Mesostigma viride]
 gi|12229759|sp|Q9MUV8|CLPP_MESVI RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|7259492|gb|AAF43793.1|AF166114_5 proteolytic subunit 2 of clp protease [Mesostigma viride]
          Length = 229

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 68/200 (34%), Positives = 123/200 (61%), Gaps = 2/200 (1%)

Query: 19  VPMVVEQTNRGERS--YDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           +P V  +      S   D+Y+RL +ERI+F+   ++D +A  +   ++FL +E+  K I 
Sbjct: 5   IPKVAYRIPGEAVSTYVDVYNRLYRERILFLGEDLDDEVANQLIGVMVFLNSEDDTKGIF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            YINSPGG + AG+ +YD +Q +   ++T CMG AASM S +L+ G  G R   P+AR++
Sbjct: 65  FYINSPGGSMNAGLGVYDMIQHVNVDVTTICMGLAASMASFILAGGTPGQRLMFPHARVM 124

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           LHQP GG  G+A  +   + ++ +++  +  +YVK  G++ E++ K ++RD+ M   +A 
Sbjct: 125 LHQPMGGNGGKAKYMVEESVEVKRLRELIAHLYVKRTGQSLEKIRKDMNRDNFMRPRQAK 184

Query: 197 DWGVVDKVLMSRIDIEEKSK 216
           ++G++D ++ +  +++E  K
Sbjct: 185 EYGLIDHMVTNVNELDELDK 204


>gi|118618991|ref|YP_907323.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           ulcerans Agy99]
 gi|183983781|ref|YP_001852072.1| ATP-dependent Clp protease proteolytic subunit ClpP2 [Mycobacterium
           marinum M]
 gi|118571101|gb|ABL05852.1| ATP-dependent CLP protease proteolytic subunit 2 ClpP2
           [Mycobacterium ulcerans Agy99]
 gi|183177107|gb|ACC42217.1| ATP-dependent CLP protease proteolytic subunit 2 ClpP2
           [Mycobacterium marinum M]
          Length = 211

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 86/194 (44%), Positives = 130/194 (67%), Gaps = 2/194 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +E ++ G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE+ +P ++I++
Sbjct: 12  ILPSFIEHSSFGVKESNPYNKLFEERIIFLGVQVDDASANDIMAQLLVLESLDPDRDITM 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++  I T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 72  YINSPGGGFTSLMAIYDTMQYVRADIQTVCLGQAASAAAVLLAAGTPGKRMALPNARVLI 131

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SG   GQ SD+E  A +I +++  +     ++ GK    + K  DRD I++A EA
Sbjct: 132 HQPSLSGVIQGQFSDLEIQAAEIERMRTLMESTLARHTGKDPSVIRKDTDRDKILTAEEA 191

Query: 196 CDWGVVDKVLMSRI 209
            D+G++D VL  R 
Sbjct: 192 KDYGIIDTVLEYRK 205


>gi|114107157|ref|YP_740142.1| clp protease proteolytic subunit [Daucus carota]
 gi|323149107|ref|YP_004222671.1| clp protease proteolytic subunit [Anthriscus cerefolium]
 gi|122239962|sp|Q0G9T7|CLPP_DAUCA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|113200932|gb|ABI32448.1| clp protease proteolytic subunit [Daucus carota]
 gi|289645600|gb|ADD13663.1| clp protease proteolytic subunit [Anthriscus cerefolium]
          Length = 197

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 74/189 (39%), Positives = 120/189 (63%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     D+Y+RL +ER++F+  +++  ++  +   +++L  EN  K++ 
Sbjct: 5   VPKVPFRSPGEEDASWVDVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIENDTKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYDTMQF++P + T CMG AASMGS +L+ GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILAGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  L  +YV+   K    V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQTGEFILEAEELLKLRETLTRVYVQRTDKPLWVVSEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
             +G+VD V
Sbjct: 185 QAYGIVDLV 193


>gi|22711907|ref|NP_683797.1| ATP-dependent Clp protease proteolytic subunit [Chaetosphaeridium
           globosum]
 gi|25008304|sp|Q8M9Y9|CLPP_CHAGL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|22416911|gb|AAM96511.1| proteolytic subunit 2 of clp protease [Chaetosphaeridium globosum]
          Length = 201

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 78/189 (41%), Positives = 122/189 (64%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +     +    D+Y+RL +ERI+F+   +   +A  I   +L+L  ++  K++ 
Sbjct: 5   VPKVPYRLPGDVQVQWIDLYNRLYRERILFLGQTVNYEIANQIIGLMLYLNGDDKSKDMY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG V  G+AIYDTMQF++P I T CMG AASMGS +L+ GE   R ALP+AR++
Sbjct: 65  LYINSPGGAVVPGIAIYDTMQFVEPEIRTICMGVAASMGSFILTGGEITKRIALPHARVM 124

Query: 137 LHQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQPS  +   QA ++   A++++K++  + ++YV+  GK    + + ++RD  MSA EA
Sbjct: 125 IHQPSSSYYKDQAGELIMEAEEVLKLRDCITKVYVQRTGKPISVISEDMERDVFMSAKEA 184

Query: 196 CDWGVVDKV 204
            ++G+VD V
Sbjct: 185 KEYGIVDLV 193


>gi|255018646|ref|ZP_05290772.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes FSL F2-515]
          Length = 161

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 94/161 (58%), Positives = 125/161 (77%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT+RGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL+A++P+K+I
Sbjct: 1   MNLIPTVIEQTSRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG ++AGMAIYDTM F+K  + T  MG AASMGS LL+AG  G RFALPNA I
Sbjct: 61  FLYINSPGGSISAGMAIYDTMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
           ++HQP GG  GQA++IE  A+ I+KIK R+N I  +  G+ 
Sbjct: 121 MIHQPLGGAQGQATEIEIAARHILKIKERMNTIMAEKTGQP 161


>gi|297162278|gb|ADI11990.1| ATP-dependent Clp protease, protease subunit [Streptomyces
           bingchenggensis BCW-1]
          Length = 211

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 87/194 (44%), Positives = 130/194 (67%), Gaps = 2/194 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T+ G R+ D YS+LL ERIVF+  Q++D  A  + AQL+ LE  +P ++ISL
Sbjct: 9   VLPEFTERTSNGVRTMDPYSKLLSERIVFLGTQVDDTSANDVIAQLVHLEHASPDQDISL 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  +A  AIYDTM F+   + T C+GQAAS  ++LL+AG  G RFALP AR+L+
Sbjct: 69  YINSPGGSFSAMTAIYDTMHFVTCDVETICLGQAASAAAVLLAAGTPGKRFALPGARVLI 128

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  S    G  SD+E  A+++++ +  L E+ V++ G+T E +   ++RD I +A +A
Sbjct: 129 HQPSFSEPIQGTTSDLELQAKEMLRTRALLEELLVRHTGQTAERIRSDIERDKIFNAEDA 188

Query: 196 CDWGVVDKVLMSRI 209
             +G+VD++  SR 
Sbjct: 189 VSYGLVDRLTQSRK 202


>gi|302534405|ref|ZP_07286747.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sp. C]
 gi|302443300|gb|EFL15116.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sp. C]
          Length = 221

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 90/193 (46%), Positives = 137/193 (70%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T++G R YD Y++L +ER++F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 25  VIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISI 84

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQF+KP I T CMGQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 85  YINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLI 144

Query: 138 HQPSGGFSG-QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQPSGG    Q SD+E  A +I++++ +L  +  K+     E++   ++RD I++A +A 
Sbjct: 145 HQPSGGTGREQLSDLEIAANEILRMRDQLETMLAKHSSTPIEKIRDDIERDKILTAEDAL 204

Query: 197 DWGVVDKVLMSRI 209
            +G++D+++ +R 
Sbjct: 205 AYGLIDQIVSTRK 217


>gi|306486008|gb|ADM92652.1| clp protease proteolytic subunit protein [Davidia involucrata]
          Length = 195

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 72/188 (38%), Positives = 118/188 (62%), Gaps = 2/188 (1%)

Query: 19  VPMVVEQTNRGERSYDIY-SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           VP V  ++   E +  +  +RL +ER++F+  +++  ++  +   +++L  E+  K++ L
Sbjct: 5   VPKVPFRSPGEEDASWVDVNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLYL 64

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           +INSPGG V  G+AIYDTMQF++P + T CMG AASMGS +L  GE   R A P+AR+++
Sbjct: 65  FINSPGGWVIPGVAIYDTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMI 124

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP S  +  Q  +    A++++K++  L  +Y +  GK    V + L+RD  MSA+EA 
Sbjct: 125 HQPASSYYEAQTGEFILEAEELLKLRETLTRVYAQRTGKPLWVVSEDLERDVFMSATEAK 184

Query: 197 DWGVVDKV 204
            +G+VD V
Sbjct: 185 AYGIVDLV 192


>gi|183179518|ref|ZP_02957729.1| Clp protease [Vibrio cholerae MZO-3]
 gi|183012929|gb|EDT88229.1| Clp protease [Vibrio cholerae MZO-3]
          Length = 156

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 108/158 (68%), Positives = 130/158 (82%), Gaps = 2/158 (1%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS++   K     +F  LVPMVVEQT+RGERSYDIYSRLLKER++F+TGQ+EDHMA L+ 
Sbjct: 1   MSYQ--EKNAMSPIFDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLE+ENP K+I LYINSPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLA 118

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
            G  G R+ LPN+R+++HQP GGF GQASDI+ HAQ+ 
Sbjct: 119 GGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEF 156


>gi|156573693|gb|ABU85179.1| clp protease proteolytic subunit [Anethum graveolens]
          Length = 197

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 74/189 (39%), Positives = 120/189 (63%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     D+Y+RL +ER++F+  +++  ++  +   +++L  EN  K++ 
Sbjct: 5   VPKVPFRSPGEEDASWVDVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIENDTKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYDTMQF++P + T CMG AASMGS +L+ GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILAGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  L  +YV+   K    V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQTGEFILEAEELLKLRETLTRVYVQRTDKPLWVVSEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
             +G+VD V
Sbjct: 185 QAYGIVDVV 193


>gi|78103274|ref|YP_358605.1| ATP-dependent Clp protease proteolytic subunit [Phalaenopsis
           aphrodite subsp. formosana]
 gi|122213418|sp|Q3BAL3|CLPP_PHAAO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|58802804|gb|AAW82524.1| ATP-dependent Clp protease proteolytic subunit [Phalaenopsis
           aphrodite subsp. formosana]
          Length = 204

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 74/189 (39%), Positives = 118/189 (62%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+RL +ER++F+  +++  ++  I   +++L  E+  +++ 
Sbjct: 5   VPKVPFRNPGEEDAVWVDVYNRLHRERLLFLGQEVDSEISNQIVGLMVYLSIEDDTRDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYDTMQF+ P + T CMG AASMGS +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGIAIYDTMQFVLPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  QA D    A++++K++  L ++YV+  G     + + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQARDFILEAEELLKLRETLTKVYVQRTGNPLWVISEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGIVDLV 193


>gi|290489468|gb|ADD31118.1| clp protease proteolytic subunit protein [Liquidambar styraciflua]
          Length = 196

 Score =  215 bits (549), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 72/189 (38%), Positives = 117/189 (61%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+RL +ER++F+  +I   ++  +   +++L  E+  K++ 
Sbjct: 5   VPKVPFRNPGEEDASWVDVYNRLYRERLLFLGQEINSEISNQLIGLMVYLSIEDDTKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG +  G+AIYDTMQF++P + T CMG AASMGS +L  G+   R A P+AR++
Sbjct: 65  LFINSPGGWLIPGVAIYDTMQFVRPDVHTICMGLAASMGSFILVGGKITKRIAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  F  Q  +    A++++K++  +  +Y +  GK +  V + ++RD  MSA+EA
Sbjct: 125 IHQPGSSYFEAQTGEFILEAEELLKLRETITRVYAQRTGKPFWVVSEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGIVDLV 193


>gi|49574608|ref|NP_848084.2| ATP-dependent Clp protease proteolytic subunit [Adiantum
           capillus-veneris]
 gi|68565049|sp|Q85FJ8|CLPP_ADICA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|48476019|gb|AAP29415.2| ATP-dependent Clp protease proteolytic subunit [Adiantum
           capillus-veneris]
          Length = 200

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 76/189 (40%), Positives = 124/189 (65%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+RL +ER++F+  Q++D +A  +   +++L +E+  K++ 
Sbjct: 5   VPKVPFRLPGEEDAVWVDVYNRLYRERLLFLGQQVDDEIANQLIGIMMYLNSEDQAKDMY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LY+NSPGG V AG+++YD MQF+ P + T CMG AASMGS +L+ GE   R ALP+AR++
Sbjct: 65  LYVNSPGGAVLAGISVYDAMQFVVPDVHTICMGLAASMGSFILAGGEITRRIALPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  + GQA +    A++++K++  + ++Y +  GK    + + ++RD  +SA EA
Sbjct: 125 IHQPASSYYDGQAGECVMEAEEVLKLRDCITKVYAQRTGKPLWLISEDMERDVFLSAEEA 184

Query: 196 CDWGVVDKV 204
            D+GVVD V
Sbjct: 185 QDYGVVDLV 193


>gi|240170931|ref|ZP_04749590.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           kansasii ATCC 12478]
          Length = 211

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 86/194 (44%), Positives = 130/194 (67%), Gaps = 2/194 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +E ++ G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE+ +P ++I++
Sbjct: 12  ILPSFIEHSSFGVKESNPYNKLFEERIIFLGVQVDDASANDIMAQLLVLESLDPDRDITM 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++  I T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 72  YINSPGGGFTSLMAIYDTMQYVRADIQTVCLGQAASAAAVLLAAGTPGKRMALPNARVLI 131

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SG   GQ SD+E  A +I +++  +     ++ GK    + K  DRD I++A EA
Sbjct: 132 HQPSLSGVIQGQFSDLEIQAAEIERMRTLMETTLARHTGKDAAVIRKDTDRDKILTAEEA 191

Query: 196 CDWGVVDKVLMSRI 209
            D+G++D VL  R 
Sbjct: 192 KDYGIIDTVLEYRK 205


>gi|154487067|ref|ZP_02028474.1| hypothetical protein BIFADO_00905 [Bifidobacterium adolescentis
           L2-32]
 gi|154084930|gb|EDN83975.1| hypothetical protein BIFADO_00905 [Bifidobacterium adolescentis
           L2-32]
          Length = 196

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 89/182 (48%), Positives = 130/182 (71%), Gaps = 1/182 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I++RLLK+RI+++  +++D MA  ICAQ+L L AE+P+K+I LYINSPGG +TAGMAIYD
Sbjct: 14  IFNRLLKDRIIWMGEEVKDEMANRICAQMLMLAAEDPKKDIWLYINSPGGSITAGMAIYD 73

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ I+P ++T  +G  ASMG  LLS+G KG RF   +AR+L+HQPSGG  G A+D+  +
Sbjct: 74  TMQLIEPDVATVGLGMCASMGQFLLSSGTKGKRFLTSHARVLMHQPSGGIGGTATDVRIN 133

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           A+ I+ +K+ ++E+  +  G T EE+ +  + DH  +A EA ++G VDK L+S  D    
Sbjct: 134 AELIMDMKKTMSELTAEQTGHTVEEIYRDNEYDHWFTAQEALEYGFVDK-LVSTHDTMSA 192

Query: 215 SK 216
           +K
Sbjct: 193 TK 194


>gi|148272645|ref|YP_001222206.1| ATP-dependent Clp protease proteolytic subunit [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|170781894|ref|YP_001710226.1| ATP-dependent Clp protease proteolytic subunit [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|147830575|emb|CAN01510.1| ATP-dependent protease, proteolytic subunit [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|169156462|emb|CAQ01610.1| ATP dependent Clp protease proteolytic subunit 2 [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 226

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 85/210 (40%), Positives = 135/210 (64%), Gaps = 2/210 (0%)

Query: 4   EGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQL 63
            G     +      ++P   E+T  G +  D Y++L ++RI+F+  Q++D  A  + AQL
Sbjct: 10  RGAGSTATSPSSRYILPSFEERTAYGYKRQDPYAKLFEDRIIFLGVQVDDASADDVMAQL 69

Query: 64  LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           L LE+ +P ++I +YINSPGG  TA  AIYDTMQ++ P I T C+GQAAS  ++LL+ G 
Sbjct: 70  LVLESMDPDRDIVMYINSPGGSFTAMTAIYDTMQYVSPQIQTVCLGQAASAAAVLLAGGA 129

Query: 124 KGMRFALPNARILLHQPSG--GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVE 181
            G R ALPNAR+L+HQP+      GQASDIE  A +I++++  L +   K+  +  +++ 
Sbjct: 130 PGKRLALPNARVLIHQPATGESSGGQASDIEIQAAEIMRMRSWLEDTLAKHTNRDRDQIN 189

Query: 182 KTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           + ++RD I+ A EA ++G++D+VL SR ++
Sbjct: 190 RDIERDKILGADEALEYGLIDQVLTSRKNL 219


>gi|50346808|ref|YP_053179.1| ATP-dependent Clp protease proteolytic subunit [Nymphaea alba]
 gi|121720638|ref|YP_001001559.1| clp protease proteolytic subunit [Nuphar advena]
 gi|68052136|sp|Q6EW27|CLPP_NYMAL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|160380559|sp|A1XFY0|CLPP_NUPAD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|50250353|emb|CAF28619.1| ATP-dependent protease proteolytic subunit [Nymphaea alba]
 gi|84682229|gb|ABC60483.1| clp protease proteolytic subunit [Nuphar advena]
          Length = 202

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 73/189 (38%), Positives = 116/189 (61%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     DIY+RL +ER++F+   ++  ++  +   +++L  E+  +++ 
Sbjct: 5   VPKVPFRSPGEEDAVWVDIYNRLHRERLLFLGQGVDSEISNQLVGLMVYLSMEDNTRDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYD MQ + P + T CMG AASMGS +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGIAIYDAMQIVPPDVHTICMGLAASMGSFILVGGEFTKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  QA +    A++++K++  L  +YV+  GK    V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQAGEFILEAEELLKLREILTRVYVQRTGKPLWVVSEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGIVDLV 193


>gi|212716950|ref|ZP_03325078.1| hypothetical protein BIFCAT_01894 [Bifidobacterium catenulatum DSM
           16992]
 gi|225352779|ref|ZP_03743802.1| hypothetical protein BIFPSEUDO_04409 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|212660235|gb|EEB20810.1| hypothetical protein BIFCAT_01894 [Bifidobacterium catenulatum DSM
           16992]
 gi|225156386|gb|EEG69955.1| hypothetical protein BIFPSEUDO_04409 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 196

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 85/173 (49%), Positives = 127/173 (73%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I++RLLK+RI+++  +++D MA  ICAQ+L L AE+P+K+I LYINSPGG +TAGMAIYD
Sbjct: 14  IFNRLLKDRIIWMGEEVKDEMANRICAQMLMLAAEDPKKDIWLYINSPGGSITAGMAIYD 73

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ I+P ++T  +G  ASMG  LLS+G KG RF   +AR+L+HQPSGG  G A+D+  +
Sbjct: 74  TMQLIEPDVATVGLGMCASMGQFLLSSGTKGKRFLTSHARVLMHQPSGGIGGTATDVRIN 133

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+ I+ +K+ ++E+  +  G T EE+ +  + DH  +A EA ++G VDK++ +
Sbjct: 134 AELIMDMKKTMSELTAEQTGHTVEEIYRDNEYDHWFTAQEALEYGFVDKLVST 186


>gi|11466727|ref|NP_039323.1| ATP-dependent Clp protease proteolytic subunit [Marchantia
           polymorpha]
 gi|116525|sp|P12208|CLPP_MARPO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|456519|emb|CAA28109.1| unnamed protein product [Marchantia polymorpha]
          Length = 203

 Score =  215 bits (548), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 77/189 (40%), Positives = 123/189 (65%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+RL +ER++F+  Q++D +A  +   +++L  E+  K++ 
Sbjct: 5   VPKVPFRLPGEEDAVWIDVYNRLYRERLLFLGQQVDDEIANQLIGIMMYLNGEDESKDMY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG V AG+++YD MQF+ P + T CMG AASMGS +L+ GE   R ALP+AR++
Sbjct: 65  LYINSPGGAVLAGISVYDAMQFVVPDVHTICMGLAASMGSFILTGGEITKRIALPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  + GQA +    A++++K++  + ++YV+  GK    + + ++RD  MSA EA
Sbjct: 125 IHQPASSYYDGQAGECIMEAEEVLKLRDCITKVYVQRTGKPLWVISEDMERDVFMSAKEA 184

Query: 196 CDWGVVDKV 204
             +G+VD V
Sbjct: 185 KLYGIVDLV 193


>gi|292559570|ref|YP_003540956.1| clpP-like protease [Phoenix dactylifera]
 gi|290790978|gb|ADD63233.1| clpP-like protease [Phoenix dactylifera]
 gi|294620602|gb|ADF28171.1| clpP-like protease [Phoenix dactylifera]
          Length = 204

 Score =  215 bits (548), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 73/198 (36%), Positives = 122/198 (61%), Gaps = 3/198 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     D+Y+RL +ER++F+  +++  ++  +   +++L  E+  +++ 
Sbjct: 5   VPKVPFRSPGEEDAVWVDVYNRLYRERLLFLGQEVDSEISNQLVGLMVYLSIEDDTRDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYDTMQF+ P + T CMG AASMGS +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGIAIYDTMQFVPPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  QA +    A++++K++  L ++YV+  G     V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQAGEFILEAEELLKLRETLTKVYVQRTGNPLWVVSEDMERDVFMSATEA 184

Query: 196 CDWGVVDKVLMSRIDIEE 213
              G+VD V +   +  +
Sbjct: 185 QVHGIVDLVAVENENTRD 202


>gi|288921296|ref|ZP_06415579.1| Endopeptidase Clp [Frankia sp. EUN1f]
 gi|288347327|gb|EFC81621.1| Endopeptidase Clp [Frankia sp. EUN1f]
          Length = 275

 Score =  215 bits (548), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 82/188 (43%), Positives = 120/188 (63%)

Query: 26  TNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV 85
           +  G     ++ RLL  RIVF+   +ED MA  ICA+LL L A++P  +I LYINSPGG 
Sbjct: 40  SPSGPSEEHVFQRLLANRIVFLGSAVEDAMANAICAKLLLLAADDPTADIYLYINSPGGS 99

Query: 86  VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS 145
           V+AGMAIYDTMQ++   ++T  +G A SM  +LL+AG  G R+ALP +++L+HQPSGG  
Sbjct: 100 VSAGMAIYDTMQYVSNDVATVALGLAGSMAQVLLTAGAPGKRYALPRSQVLMHQPSGGIG 159

Query: 146 GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           G +SDI   A  ++  KR L ++   + G+  E +E   DRD   +A +A ++G+VD VL
Sbjct: 160 GGSSDIAIQATQMLATKRLLQQLIALHSGQPVERIEADADRDRWFTAEQAREYGLVDHVL 219

Query: 206 MSRIDIEE 213
               ++ +
Sbjct: 220 HRAGELTD 227


>gi|290489454|gb|ADD31111.1| clp protease proteolytic subunit protein [Berberidopsis corallina]
          Length = 196

 Score =  215 bits (547), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 72/189 (38%), Positives = 119/189 (62%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     D+Y+RL +ER++F+  +++  ++  +   +++L  E+  K + 
Sbjct: 5   VPKVPFRSPGEEDASWVDVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKNLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYDTMQF++P + T CMG AASMGS +L+ GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGVAIYDTMQFVRPNVHTICMGLAASMGSFILAGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A+++++++  L  +Y +  GK+   V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQTGEFILEAEELLRLRESLTRVYAQRTGKSLWVVSEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QTHGIVDLV 193


>gi|171743309|ref|ZP_02919116.1| hypothetical protein BIFDEN_02440 [Bifidobacterium dentium ATCC
           27678]
 gi|306823254|ref|ZP_07456630.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           dentium ATCC 27679]
 gi|309801909|ref|ZP_07696024.1| endopeptidase Clp [Bifidobacterium dentium JCVIHMP022]
 gi|171278923|gb|EDT46584.1| hypothetical protein BIFDEN_02440 [Bifidobacterium dentium ATCC
           27678]
 gi|304553886|gb|EFM41797.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           dentium ATCC 27679]
 gi|308221465|gb|EFO77762.1| endopeptidase Clp [Bifidobacterium dentium JCVIHMP022]
          Length = 196

 Score =  215 bits (547), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 89/182 (48%), Positives = 130/182 (71%), Gaps = 1/182 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I++RLLK+RI+++  +++D MA  ICAQ+L L AE+P+K+I LYINSPGG +TAGMAIYD
Sbjct: 14  IFNRLLKDRIIWMGEEVKDDMANRICAQMLMLAAEDPKKDIWLYINSPGGSITAGMAIYD 73

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ I+P ++T  +G  ASMG  LLS+G KG RF   +AR+L+HQPSGG  G A+D+  +
Sbjct: 74  TMQLIEPDVATVGLGMCASMGQFLLSSGTKGKRFLTSHARVLMHQPSGGIGGTATDVRIN 133

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           A+ I+ +K+ ++E+  +  G T EE+ +  + DH  +A EA ++G VDK L+S  D    
Sbjct: 134 AELIMDMKKTMSELTAEQTGHTVEEIYRDNEYDHWFTAQEALEYGFVDK-LVSTHDTMSA 192

Query: 215 SK 216
           +K
Sbjct: 193 TK 194


>gi|313183906|ref|YP_004021760.1| clp protease proteolytic subunit [Equisetum arvense]
 gi|281371626|gb|ADA63559.1| clp protease proteolytic subunit [Equisetum arvense]
          Length = 204

 Score =  215 bits (547), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 77/189 (40%), Positives = 122/189 (64%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+RL +ER++F+  Q++D ++  +   +++L  E+  +++ 
Sbjct: 5   VPKVPFRLPGEEDAVWIDVYNRLYRERLLFLGQQVDDEISNQLVGIMMYLNGEDDTRDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG V  G+++YD MQF+ P + T CMG AASMGS +L+ GE   R ALP+ARI+
Sbjct: 65  LYINSPGGAVLPGISVYDAMQFVIPDVHTICMGLAASMGSFILAGGEITKRLALPHARIM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  + GQA +    A++I K++  + ++YV+  GK    V + ++RD  MSA EA
Sbjct: 125 IHQPASSYYDGQAGECVLEAEEISKLRDCITKVYVQRTGKPLRVVSEDMERDVFMSAEEA 184

Query: 196 CDWGVVDKV 204
            D+G++D V
Sbjct: 185 RDYGLIDLV 193


>gi|239917500|ref|YP_002957058.1| ATP-dependent Clp protease proteolytic subunit ClpP [Micrococcus
           luteus NCTC 2665]
 gi|281414010|ref|ZP_06245752.1| ATP-dependent Clp protease proteolytic subunit ClpP [Micrococcus
           luteus NCTC 2665]
 gi|289705667|ref|ZP_06502052.1| Clp protease [Micrococcus luteus SK58]
 gi|239838707|gb|ACS30504.1| ATP-dependent Clp protease proteolytic subunit ClpP [Micrococcus
           luteus NCTC 2665]
 gi|289557615|gb|EFD50921.1| Clp protease [Micrococcus luteus SK58]
          Length = 221

 Score =  215 bits (547), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 91/193 (47%), Positives = 133/193 (68%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++RIVF+  Q++D  A  + AQLL LEA + +++I+L
Sbjct: 23  ILPQFEERTPYGFKRQDPYAKLFEDRIVFLGAQVDDASADDVMAQLLVLEAMDSERDITL 82

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQFI+P + T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 83  YINSPGGSFTAMTAIYDTMQFIRPEVQTVCLGQAASAAAVLLAAGAPGKRLALPNARVLI 142

Query: 138 HQPSGGF-SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+     G A+D+E HAQ+I +++  + E       +T EEV + +DRD  +SA +A 
Sbjct: 143 HQPAMQGDRGTATDLEIHAQEINRMRVWMEETLASLTNRTPEEVSQDIDRDKFLSAEQAL 202

Query: 197 DWGVVDKVLMSRI 209
           ++G+VD+VL SR 
Sbjct: 203 EYGLVDEVLASRK 215


>gi|160332321|sp|P56772|CLPP1_ARATH RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase ClpP1; Short=pClpP
          Length = 196

 Score =  215 bits (547), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 70/189 (37%), Positives = 117/189 (61%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNR--GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++         DIY+RL +ER+ F+  +++  ++  + + +++L  E   K++ 
Sbjct: 5   VPKVPFRSPGEGDTSWVDIYNRLYRERLFFLGQEVDTEISNQLISLMIYLSIEKDTKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V +GMAIYDTMQF++P + T CMG AAS+ S +L  G    R A P+AR++
Sbjct: 65  LFINSPGGWVISGMAIYDTMQFVRPDVQTICMGLAASIASFILVGGAITKRIAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  +  +YV+  GK    + + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPIWVISEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
             +G+VD V
Sbjct: 185 QAYGIVDLV 193


>gi|296139185|ref|YP_003646428.1| endopeptidase Clp [Tsukamurella paurometabola DSM 20162]
 gi|296027319|gb|ADG78089.1| Endopeptidase Clp [Tsukamurella paurometabola DSM 20162]
          Length = 222

 Score =  215 bits (547), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 80/194 (41%), Positives = 126/194 (64%), Gaps = 3/194 (1%)

Query: 19  VPMVVEQTNRGE-RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +P   E+   GE R  D Y++L  ERI+F+  QI++  A  + AQLL LE+++P ++I++
Sbjct: 25  IPQFFERAANGEQRVMDPYAKLFDERIIFLKTQIDEVSANDVMAQLLVLESQDPDRDITI 84

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +   + IYDTMQ++   ++T  +G AAS  ++LL+ G  G R ALPN+ +L+
Sbjct: 85  YINSPGGSLYDALGIYDTMQYVHCDVATVVLGTAASAAAILLAGGTPGKRAALPNSTVLI 144

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP   G   GQ SD+E  A ++ + + RL+EI   + G+T E++ K  DRD+I++A +A
Sbjct: 145 HQPRTGGAMRGQVSDLEIQAAEMERARNRLDEILASHTGQTVEQIRKDTDRDNILTADQA 204

Query: 196 CDWGVVDKVLMSRI 209
            ++G+VD V   R 
Sbjct: 205 KEYGIVDTVFPYRK 218


>gi|81176276|ref|YP_398353.1| ATP-dependent Clp protease proteolytic subunit [Lactuca sativa]
 gi|122212017|sp|Q332V2|CLPP_LACSA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|78675194|dbj|BAE47620.1| ATP-dependent clp protease proteolytic subunit [Lactuca sativa]
 gi|88657007|gb|ABD47257.1| clp protease proteolytic subunit [Lactuca sativa]
          Length = 196

 Score =  215 bits (547), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 75/189 (39%), Positives = 121/189 (64%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     DIY+RL +ER++F+  +++  ++  +   +++L  E+  K++ 
Sbjct: 5   VPKVPFRSPGEEDASWVDIYNRLYRERLLFLGQEVDSEISNQLIGLMIYLSIEDDTKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+A+YDTMQF++P + T CMG AASMGS +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGVALYDTMQFVQPDVHTICMGSAASMGSFILVGGEITKRLAFPHARVM 124

Query: 137 LHQPSGGFSGQAS-DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP+G FS  A+ +      +++K++  L  +YV+  GK    V + ++RD  MSA+EA
Sbjct: 125 IHQPAGSFSEVATGEFILEVGELLKLRETLTRVYVQRTGKPLWVVSEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
             +G+VD V
Sbjct: 185 QAYGIVDLV 193


>gi|149390466|ref|YP_001294295.1| clp protease proteolytic subunit [Illicium oligandrum]
 gi|160380554|sp|A6MMW9|CLPP_ILLOL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|147917419|gb|ABQ52543.1| clp protease proteolytic subunit [Illicium oligandrum]
          Length = 202

 Score =  215 bits (547), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 71/189 (37%), Positives = 115/189 (60%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNR--GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +     G    D+Y+RL +ER++F+   ++  ++  +   +++L  E+  +++ 
Sbjct: 5   VPKVPFRNPGEEGAVWVDVYNRLHRERLLFLGQGVDSEISNQLVGLMVYLSIEDDTRDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYDTMQF+ P + T CMG AASMGS LL+ GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGIAIYDTMQFVPPDVHTICMGLAASMGSFLLAGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  +  +Y +  G     V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQTGEFILEAEELLKLRETITRVYAQRTGNPLWVVFEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGIVDLV 193


>gi|323148930|ref|YP_004222484.1| clp protease proteolytic subunit [Smilax china]
 gi|308742621|gb|ADO33472.1| clp protease proteolytic subunit [Smilax china]
          Length = 204

 Score =  215 bits (547), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 72/189 (38%), Positives = 117/189 (61%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+RL +ER++F+  +++  ++  +   +++L  E+  ++  
Sbjct: 5   VPKVPFRNPGEEDAVWVDVYNRLHRERLLFLGQEVDSEISNQLVGLMVYLSIEDKTRDFF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYDTMQF+ P + T CMG AASMGS +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGIAIYDTMQFVPPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  QA +    A++++K++  + ++YV+  G     V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQAGEFILEAEELLKLRETITKVYVQRTGNPLWVVSEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QSHGIVDLV 193


>gi|300859021|ref|YP_003784004.1| hypothetical protein cpfrc_01604 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686475|gb|ADK29397.1| hypothetical protein cpfrc_01604 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206720|gb|ADL11062.1| ATP-dependent Clp protease proteolytic subunit 1 [Corynebacterium
           pseudotuberculosis C231]
 gi|302331274|gb|ADL21468.1| ATP-dependent Clp protease proteolytic subunit 1 [Corynebacterium
           pseudotuberculosis 1002]
          Length = 209

 Score =  215 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 83/210 (39%), Positives = 135/210 (64%), Gaps = 5/210 (2%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           M+  G         +  ++P  +E +  G +  + Y++L +ERI+F+  Q++D  A  I 
Sbjct: 1   MTTSGMQ--MPSARY--VLPSFIEHSTYGTKETNPYAKLFEERIIFLGTQVDDTSANDIM 56

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLL LE  +P ++I++YINSPGG  T+ MAIYDTMQ+++P + T C+GQAAS  ++LL+
Sbjct: 57  AQLLVLEGLDPDRDITMYINSPGGSFTSLMAIYDTMQYVRPDVRTVCLGQAASAAAVLLA 116

Query: 121 AGEKGMRFALPNARILLHQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
           AG  G R  LPN+R+L+HQP+     GQ SD+E  A++I +++  + +   ++ G+T E+
Sbjct: 117 AGAPGKRACLPNSRVLIHQPATQGTQGQVSDLEIQAKEIERMRTLMEQTLSRHTGRTPEQ 176

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           V    DRD I++A EA ++G++D+V   R 
Sbjct: 177 VRIDTDRDKILTAQEAVEYGIIDQVFDYRK 206


>gi|290489462|gb|ADD31115.1| clp protease proteolytic subunit protein [Ficus sp. Moore 315]
          Length = 208

 Score =  215 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 72/189 (38%), Positives = 116/189 (61%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     DIY+RL +ER++F+   I   ++  +   +++L  E+  K++ 
Sbjct: 5   VPKVPFRSPGDEDALWIDIYNRLYRERLLFLGQPITSEISNQLIGLMVYLSIEDDTKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L++NSPGG V  G+ IYDTMQF++P + T CMG AASMGS +L  GE   R A P+AR++
Sbjct: 65  LFLNSPGGWVIPGLGIYDTMQFVQPDVQTICMGLAASMGSFILVGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  L  +Y +  GK+   + + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQTGEFILEAEELLKLRETLTRVYAQRTGKSLWVISEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGLVDLV 193


>gi|75755684|ref|YP_319788.1| ATP-dependent Clp protease proteolytic subunit [Acorus calamus]
 gi|161622334|ref|YP_001586206.1| ATP-dependent Clp protease proteolytic subunit [Acorus americanus]
 gi|122217404|sp|Q3V509|CLPP_ACOCL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|74381734|emb|CAI53819.1| ATP-dependent protease proteolytic subunit [Acorus calamus]
 gi|160369877|gb|ABX38768.1| clp protease proteolytic subunit [Acorus americanus]
          Length = 202

 Score =  215 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 72/189 (38%), Positives = 117/189 (61%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     DIY+RL +ER++F+  +++  ++  +   +++L  E+  ++  
Sbjct: 5   VPKVPFRSPGEEDAAWVDIYNRLHRERLLFLGQELDSEISNQLVGLMVYLSIEDKTRDFF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+ +YDTMQF+ P + T CMG AASMGS +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGIGLYDTMQFVPPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  QA +    A++++K++  L  +YV+  GK    V + ++RD  +SA+EA
Sbjct: 125 IHQPASSFYEAQAGEFVLEAEELLKLRETLTRVYVQRTGKPLWVVSEDMERDVFLSATEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGIVDLV 193


>gi|294786960|ref|ZP_06752214.1| Clp protease [Parascardovia denticolens F0305]
 gi|315226599|ref|ZP_07868387.1| ATP-dependent Clp protease proteolytic subunit [Parascardovia
           denticolens DSM 10105]
 gi|294485793|gb|EFG33427.1| Clp protease [Parascardovia denticolens F0305]
 gi|315120731|gb|EFT83863.1| ATP-dependent Clp protease proteolytic subunit [Parascardovia
           denticolens DSM 10105]
          Length = 223

 Score =  215 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 86/193 (44%), Positives = 136/193 (70%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T+ G +  D YS+L ++RI+F+  Q++D  A  I AQLL LE+++P +++ L
Sbjct: 31  VMPQFEERTSFGFKRSDPYSKLFEDRIIFMGVQVDDTSADDIMAQLLVLESQDPDRDVVL 90

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL+AG KG R  LPNAR+L+
Sbjct: 91  YINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLAAGTKGKRLMLPNARVLI 150

Query: 138 HQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+ G   G+A++IE  A+++++++  L E   K+ G+  + + K ++ D I++A +A 
Sbjct: 151 HQPAMGQDFGKATEIEIQAKELLRMREWLEETLAKHTGQEVDRIRKDIETDTILTAQQAL 210

Query: 197 DWGVVDKVLMSRI 209
           ++G+VD VL  R 
Sbjct: 211 EYGMVDAVLEHRK 223


>gi|15827777|ref|NP_302040.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           leprae TN]
 gi|221230254|ref|YP_002503670.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           leprae Br4923]
 gi|14194506|sp|Q9CBY4|CLPP2_MYCLE RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|13093329|emb|CAC30429.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           leprae]
 gi|219933361|emb|CAR71573.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           leprae Br4923]
          Length = 214

 Score =  215 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 86/194 (44%), Positives = 130/194 (67%), Gaps = 2/194 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +E ++ G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE+ +P ++I++
Sbjct: 15  ILPSFIEHSSFGVKESNPYNKLFEERIIFLGVQVDDASANDIMAQLLVLESLDPDRDITM 74

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++  I T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 75  YINSPGGGFTSLMAIYDTMQYVRADIQTVCLGQAASAAAVLLAAGTPGKRMALPNARVLI 134

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQPS  G   GQ SD+E  A +I +++  +     ++ GK    + K  DRD I++A EA
Sbjct: 135 HQPSLAGVIQGQFSDLEIQAAEIERMRTLMETTLSRHTGKDAAVIRKDTDRDKILTAEEA 194

Query: 196 CDWGVVDKVLMSRI 209
            D+G++D VL  R 
Sbjct: 195 KDYGIIDTVLEYRK 208


>gi|254821427|ref|ZP_05226428.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           intracellulare ATCC 13950]
          Length = 211

 Score =  215 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 87/194 (44%), Positives = 130/194 (67%), Gaps = 2/194 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +E ++ G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE+ +P ++I++
Sbjct: 12  ILPSFIEHSSFGVKESNPYNKLFEERIIFLGVQVDDASANDIMAQLLVLESLDPDRDITM 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++  I T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 72  YINSPGGGFTSLMAIYDTMQYVRADIQTVCLGQAASAAAVLLAAGTPGKRMALPNARVLI 131

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQPS  G   GQ SD+E  A +I +++  +     ++ GK    V K  DRD I++A EA
Sbjct: 132 HQPSLQGVIQGQFSDLEIQAAEIERMRTLMETTLARHTGKDAATVRKDTDRDKILTAEEA 191

Query: 196 CDWGVVDKVLMSRI 209
            D+G++D VL  R 
Sbjct: 192 KDYGIIDTVLEYRK 205


>gi|197294136|ref|YP_002149757.1| clp protease proteolytic subunit [Cicer arietinum]
 gi|197089824|gb|ACH41094.1| clp protease proteolytic subunit [Cicer arietinum]
          Length = 197

 Score =  214 bits (546), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 73/192 (38%), Positives = 119/192 (61%), Gaps = 3/192 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V       +     D+Y+RL +ER++F+  ++   ++  +   +++L  E+  K++ 
Sbjct: 5   VPKVPFLVPGDDEASWIDLYNRLFQERLLFLGQEVNSEISNQLVGLMVYLSLEDKNKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V +GMAI+DTMQF++  + T C+G AASMGSL+L  GE   R A P+AR++
Sbjct: 65  LFINSPGGEVISGMAIFDTMQFVEAEVQTVCVGLAASMGSLILVGGEITKRLAFPHARVM 124

Query: 137 LHQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP+  F  GQ  +    A ++++++R +  IY +  GK   ++ K ++RD  MSA EA
Sbjct: 125 IHQPATSFYEGQTVECMLEANELLQMRRNITNIYAQRTGKPSWQISKDMERDLFMSAEEA 184

Query: 196 CDWGVVDKVLMS 207
             +G+VD V  S
Sbjct: 185 QAYGLVDMVADS 196


>gi|290489434|gb|ADD31101.1| clp protease proteolytic subunit protein [Aucuba japonica]
          Length = 198

 Score =  214 bits (546), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 74/191 (38%), Positives = 119/191 (62%), Gaps = 5/191 (2%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+RL +ER++F+  +++  ++  +   +++L  E+  K++ 
Sbjct: 5   VPKVPFRNPGEEDASWVDVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI- 135
           L+INSPGG V  G+AIYDTMQF++P + T CMG AASMGS +L  GE   R A P+A+I 
Sbjct: 65  LFINSPGGWVIPGVAIYDTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHAQIR 124

Query: 136 -LLHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            ++HQP S  +  Q  +    A++++K++  L  +YV+  GK    V + ++RD  MSA+
Sbjct: 125 VMIHQPASSFYEAQTGEFILEAEELLKLRESLTRVYVQRTGKPLWVVSEDMERDVFMSAT 184

Query: 194 EACDWGVVDKV 204
           EA  +G+VD V
Sbjct: 185 EAQAYGIVDLV 195


>gi|26324293|dbj|BAC24984.1| unnamed protein product [Mus musculus]
          Length = 189

 Score =  214 bits (546), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 90/159 (56%), Positives = 127/159 (79%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM 108
           G I+D +A+L+ AQLLFL++E+ +K I +YINSPGGVVTAG+AIYDTMQ+I  PI T+C+
Sbjct: 2   GPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCV 61

Query: 109 GQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           GQAASMGSLLL+AG  GMR +LPN+RI++HQPSGG  GQA+DI   A++I+K+K++L  I
Sbjct: 62  GQAASMGSLLLAAGSPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNI 121

Query: 169 YVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           Y K+  ++ + +E  ++RD  MS  EA ++G++DKVL+ 
Sbjct: 122 YAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVH 160


>gi|290489478|gb|ADD31123.1| clp protease proteolytic subunit protein [Trochodendron aralioides]
          Length = 202

 Score =  214 bits (546), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 71/189 (37%), Positives = 116/189 (61%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     D+Y+RL +ER++F+   ++  ++  +   +++L  E+  +++ 
Sbjct: 5   VPKVPFRSPGEEDAVWVDVYNRLHRERLLFLGQDVDSEISNQLIGLMVYLSIEDDTRDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYDTMQF+ P + T CMG AASMGS +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGVAIYDTMQFVPPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  +  +YV+  G     V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGNPLWVVSEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGLVDLV 193


>gi|114329772|ref|YP_740590.1| clp protease proteolytic subunit [Platanus occidentalis]
 gi|122166011|sp|Q09G21|CLPP_PLAOC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|114054410|gb|ABI49804.1| clp protease proteolytic subunit [Platanus occidentalis]
          Length = 202

 Score =  214 bits (546), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 72/189 (38%), Positives = 117/189 (61%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     D+Y+RL +ER++F+  +++  ++  +   +++L  E+  +++ 
Sbjct: 5   VPKVPFRSPGEEDAIWVDVYNRLHRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTRDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYDTMQF+ P + T CMG AASMGS +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGIAIYDTMQFVPPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  L  +YV+  G     V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQTGEFILEAEELLKLRETLTRVYVQRTGNPLWVVSEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGIVDLV 193


>gi|89280660|ref|YP_514877.1| ATP-dependent Clp protease proteolytic subunit [Solanum
           lycopersicum]
 gi|122201771|sp|Q2MI76|CLPP_SOLLC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|84372007|gb|ABC56324.1| clp protease proteolytic subunit [Solanum lycopersicum]
 gi|89241696|emb|CAJ32419.1| ATP-dependent Clp protease proteolytic subunit [Solanum
           lycopersicum]
          Length = 206

 Score =  214 bits (546), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 72/189 (38%), Positives = 116/189 (61%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGE--RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP VV +          DIY+RL +ER++F+   I   ++  +   +L+L  E+  K++ 
Sbjct: 5   VPRVVFRNPGDPISSWVDIYNRLYRERLLFLGQGIGTELSNQLIGLMLYLSMEDENKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L++NSPGG V  G+AIYDTMQF++P I T C+G AASMGS +L+ G+   R A P+AR++
Sbjct: 65  LFVNSPGGWVIPGIAIYDTMQFVRPDIHTICLGLAASMGSFILAGGQLTKRIAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +H+P SG +  Q  +    A ++ K++  L  +Y +  G+    + + ++RD  MSA+EA
Sbjct: 125 IHEPYSGFYMAQVGEFVLEAIEMAKLRETLTRVYAEKTGQPVWVIHEDMERDIFMSATEA 184

Query: 196 CDWGVVDKV 204
             +G+VD V
Sbjct: 185 QAYGIVDFV 193


>gi|218510872|ref|ZP_03508750.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli
           Brasil 5]
          Length = 153

 Score =  214 bits (546), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 128/153 (83%), Positives = 145/153 (94%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQTNRGERSYDIYSRLLKERI+F+TG +EDHMATL+CAQLLFLEAENP+KEI
Sbjct: 1   MALVPMVVEQTNRGERSYDIYSRLLKERIIFLTGAVEDHMATLVCAQLLFLEAENPKKEI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LYINSPGGVVTAGMAIYDTMQFIKP +ST C+GQAASMGSLLL+AG K MRFA PN+RI
Sbjct: 61  ALYINSPGGVVTAGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLAAGHKDMRFATPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           ++HQPSGGF GQASDIERHA+DI+K+KRRLNE+
Sbjct: 121 MVHQPSGGFQGQASDIERHARDILKMKRRLNEV 153


>gi|193237752|dbj|BAG50149.1| ATP-dependent Clp protease proteolytic subunit [Takakia
           lepidozioides]
 gi|193237765|dbj|BAG50156.1| ATP-dependent Clp protease proteolytic subunit [Takakia
           lepidozioides]
          Length = 204

 Score =  214 bits (546), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 76/189 (40%), Positives = 122/189 (64%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+RL +ER++F+   ++D +A  +   +++L  E+  K++ 
Sbjct: 5   VPKVPFRLPGEEDAVWIDVYNRLYRERLLFLGQHVDDEIANQLIGIMMYLNGEDESKDMY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG V AG+++YD MQF+ P + T CMG AASMGS +L+ GE   R ALP+AR++
Sbjct: 65  LYINSPGGAVLAGISVYDAMQFVVPDVHTICMGLAASMGSFILTGGEITKRIALPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  + GQA +    A++++K++  + ++YV+  GK    + + ++RD  MSA EA
Sbjct: 125 IHQPASSYYDGQAGECIMEAEEVLKLRDCITKVYVQRTGKPLWIISEDMERDVFMSAEEA 184

Query: 196 CDWGVVDKV 204
             +G+VD V
Sbjct: 185 KVYGIVDFV 193


>gi|169628672|ref|YP_001702321.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           abscessus ATCC 19977]
 gi|169240639|emb|CAM61667.1| ATP-dependent Clp protease, proteolytic subunit 1 [Mycobacterium
           abscessus]
          Length = 217

 Score =  214 bits (546), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 85/194 (43%), Positives = 129/194 (66%), Gaps = 2/194 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +E ++ G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE+ +P +EI++
Sbjct: 17  ILPSFIEHSSFGVKESNPYNKLFEERIIFLGVQVDDASANDIMAQLLVLESLDPDREITM 76

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++  I T  +GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 77  YINSPGGSFTSLMAIYDTMQYVRSDIRTVVLGQAASAAAVLLAAGTPGKRMALPNARVLI 136

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SG   GQ +D+E  A +I +++        ++ G+  EE+ K  DRD I +A EA
Sbjct: 137 HQPALSGVIQGQFTDLEIQAAEIERMRVLQETTLARHTGRPAEEIRKDTDRDKIFTAEEA 196

Query: 196 CDWGVVDKVLMSRI 209
            ++G++D VL  R 
Sbjct: 197 KEYGIIDVVLEYRK 210


>gi|296170472|ref|ZP_06852060.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295894943|gb|EFG74664.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 214

 Score =  214 bits (546), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 86/194 (44%), Positives = 130/194 (67%), Gaps = 2/194 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +E ++ G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE+ +P ++I++
Sbjct: 15  ILPSFIEHSSFGVKESNPYNKLFEERIIFLGVQVDDASANDIMAQLLVLESLDPDRDITM 74

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++  I T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 75  YINSPGGGFTSLMAIYDTMQYVRADIQTVCLGQAASAAAVLLAAGTPGKRMALPNARVLI 134

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQPS  G   GQ SD+E  A +I +++  +     ++ GK    V K  DRD I++A EA
Sbjct: 135 HQPSLQGVIQGQFSDLEIQAAEIERMRTLMETTLARHTGKDAATVRKDTDRDKILTADEA 194

Query: 196 CDWGVVDKVLMSRI 209
            ++G++D VL  R 
Sbjct: 195 KEYGIIDTVLEYRK 208


>gi|88855134|ref|ZP_01129799.1| ATP-dependent Clp protease proteolytic subunit [marine
           actinobacterium PHSC20C1]
 gi|88815662|gb|EAR25519.1| ATP-dependent Clp protease proteolytic subunit [marine
           actinobacterium PHSC20C1]
          Length = 205

 Score =  214 bits (546), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 82/169 (48%), Positives = 121/169 (71%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           ++ +LLK+RI+++  ++ D  A  ICA++L L AE+P+++I LY+NSPGG +TAGMAIYD
Sbjct: 10  VFDQLLKDRIIWLGSEVRDSNANEICAKILLLAAEDPKRDIYLYVNSPGGSITAGMAIYD 69

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM+F+   I T  +G AASMG  LLS+G KG R+  PNAR+LLHQPSGGF G ++DI+  
Sbjct: 70  TMKFVPNDIVTVGIGLAASMGQFLLSSGTKGKRYITPNARVLLHQPSGGFGGTSADIQTQ 129

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
           A  I+ +K+R+ E+  +  GK+ E+V    DRD+  +A +A ++G VD 
Sbjct: 130 AGVILDMKKRMAELTAEQTGKSVEQVLIDNDRDNWFTARQALEYGFVDH 178


>gi|237785950|ref|YP_002906655.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758862|gb|ACR18112.1| ATP-dependent Clp protease proteolytic subunit 2 [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 228

 Score =  214 bits (546), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 83/207 (40%), Positives = 134/207 (64%), Gaps = 3/207 (1%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +  E  +  ++P  VE ++ G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE 
Sbjct: 24  QMPESRY--ILPSFVEHSSFGAKESNPYNKLFEERIIFLGTQVDDASANDIMAQLLVLEG 81

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
            +P ++I++YINSPGG  T+ MAIYDTMQ+++P + T C+GQAAS  ++LL+AG  G R 
Sbjct: 82  LDPDRDITMYINSPGGSFTSLMAIYDTMQYVRPDVVTVCLGQAASAAAVLLAAGTPGKRA 141

Query: 129 ALPNARILLHQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           ALPNAR+L+HQP+     GQ SD+E  A +I +++  +     ++ G + E++    DRD
Sbjct: 142 ALPNARVLIHQPATQGTQGQVSDLEIQAAEIERMRTLMETTLARHTGVSAEQIRIDTDRD 201

Query: 188 HIMSASEACDWGVVDKVLMSRIDIEEK 214
            I++A  A ++G++D+V   R    +K
Sbjct: 202 KILTAEGAKEYGIIDQVFDYRKASAQK 228


>gi|114329680|ref|YP_740501.1| clp protease proteolytic subunit [Citrus sinensis]
 gi|122166158|sp|Q09MF2|CLPP_CITSI RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|113952646|gb|ABI49044.1| clp protease proteolytic subunit [Citrus sinensis]
          Length = 196

 Score =  214 bits (545), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 77/189 (40%), Positives = 119/189 (62%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGE--RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   +     DIY+RL +ER++F+   +E  ++  +   +++L  EN  K++ 
Sbjct: 5   VPKVPYRSPGDKHPSWVDIYNRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYDTMQF++P + T CMG AASMGS LL+AG    R A P+AR++
Sbjct: 65  LFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHARVM 124

Query: 137 LHQPSGGFSG-QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP G F G Q  +     +++++++  L  +YV+  GK    V + ++RD  MSA+EA
Sbjct: 125 IHQPIGAFYGAQTGEFILDTEELLRLREILTMVYVQRSGKPLWVVSEDMERDTFMSATEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGLVDLV 193


>gi|218439261|ref|YP_002377590.1| ATP-dependent Clp protease-like protein [Cyanothece sp. PCC 7424]
 gi|218171989|gb|ACK70722.1| Endopeptidase Clp [Cyanothece sp. PCC 7424]
          Length = 228

 Score =  214 bits (545), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 80/199 (40%), Positives = 121/199 (60%), Gaps = 19/199 (9%)

Query: 34  DIYSRLLKERIVFVTG----------QIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           D+ S LLKERIV++            Q+   +  LI AQLL+L+ ++P K I  YINS G
Sbjct: 24  DLESLLLKERIVYLGMPLFSSDEIKQQVGIDVTQLIIAQLLYLQFDDPDKPIYFYINSTG 83

Query: 84  GV---------VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
                       T   AI DT+ +IKPP+ T C+GQA    +++LSAG KG R +LP+A 
Sbjct: 84  TSWYTGDAIGFETEAFAICDTINYIKPPVHTICIGQAMGTAAMILSAGTKGCRASLPHAT 143

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I+L+Q   G  GQA+DI+  A++++  KR + EI+ KN G+T E++ K LDR   M+  +
Sbjct: 144 IVLNQNRTGAQGQATDIQIRAKEVLANKRTMLEIFAKNTGQTVEKLAKDLDRTFYMTPEQ 203

Query: 195 ACDWGVVDKVLMSRIDIEE 213
           A ++G++D+VL SR ++ +
Sbjct: 204 AKEYGLIDRVLESRKELPK 222


>gi|289065114|ref|YP_003434000.1| clp protease proteolytic subunit [Typha latifolia]
 gi|281371797|gb|ADA63724.1| clp protease proteolytic subunit [Typha latifolia]
          Length = 203

 Score =  214 bits (545), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 72/197 (36%), Positives = 122/197 (61%), Gaps = 2/197 (1%)

Query: 19  VPMVVEQTNRGERSYDIY-SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           VP V  ++   E +  +  +RL +ER++F+  +++  ++  +   +++L  E+  +++ L
Sbjct: 5   VPKVPFRSPGEEDAVWVDVNRLYRERLLFLGQEVDSEISNQLVGLMVYLSIEDDTRDLYL 64

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           +INSPGG V  G+AIYDTMQF+ P + T CMG AASMGS +L  GE   R A P+AR+++
Sbjct: 65  FINSPGGWVIPGIAIYDTMQFVPPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMI 124

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP S  +  QA +    A++++K++  L ++YV+  G     V + ++RD  MSA+EA 
Sbjct: 125 HQPASSFYEAQAGEFILEAEELLKLRETLTKVYVQRTGNPLWVVSEDMERDVFMSATEAQ 184

Query: 197 DWGVVDKVLMSRIDIEE 213
             G+VD V +   + E+
Sbjct: 185 AHGIVDLVAVENENTED 201


>gi|25028867|ref|NP_738921.1| ATP-dependent Clp protease proteolytic subunit [Corynebacterium
           efficiens YS-314]
 gi|259507929|ref|ZP_05750829.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Corynebacterium efficiens YS-314]
 gi|67460557|sp|Q8FN37|CLPP1_COREF RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|23494154|dbj|BAC19121.1| putative endopeptidase Clp chain P2 [Corynebacterium efficiens
           YS-314]
 gi|259164424|gb|EEW48978.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Corynebacterium efficiens YS-314]
          Length = 208

 Score =  214 bits (545), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 84/193 (43%), Positives = 131/193 (67%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +EQ+  G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE  +P ++I++
Sbjct: 13  VLPSFIEQSAYGTKETNPYAKLFEERIIFLGTQVDDTSANDIMAQLLVLEGMDPDRDITM 72

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA MAIYDTMQ+++P + T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 73  YINSPGGSFTALMAIYDTMQYVRPDVQTVCLGQAASAAAVLLAAGAPGKRAALPNARVLI 132

Query: 138 HQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+     GQ SD+E  A +I ++++ +     ++ GKT E++    DRD I++A  A 
Sbjct: 133 HQPATQGTQGQVSDLEIQAAEIERMRKLMETTLSQHTGKTPEQIRIDTDRDKILTAEGAL 192

Query: 197 DWGVVDKVLMSRI 209
           ++G++D+V   R 
Sbjct: 193 EYGIIDQVFDYRK 205


>gi|115605046|ref|YP_784498.1| clp protease proteolytic subunit [Piper cenocladum]
 gi|122164337|sp|Q06GN5|CLPP_PIPCE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|112253775|gb|ABI14496.1| clp protease proteolytic subunit [Piper cenocladum]
          Length = 202

 Score =  214 bits (545), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 72/189 (38%), Positives = 115/189 (60%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     D+Y+RL +ER++F+  +++  ++  I   +++L  E+  +++ 
Sbjct: 5   VPKVPFRSPGEEDAAWVDVYNRLHRERLLFLGQEVDSEISNQIVGLMVYLSIEDGTRDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYDTMQF+ P + T CMG AASMGS +L  GE   R A P+A ++
Sbjct: 65  LFINSPGGWVIPGIAIYDTMQFVSPDVHTICMGLAASMGSFILVGGEITKRLAFPHAWVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +     +    A++++K++  L  +YV+  G     V + L+RD  MSA+EA
Sbjct: 125 IHQPASSFYEAPTGEFILEAEELLKLRETLTRVYVQRTGNPLWVVSEDLERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGIVDLV 193


>gi|108796681|ref|YP_636469.1| ATP-dependent Clp protease proteolytic subunit [Zygnema
           circumcarinatum]
 gi|122211761|sp|Q32RQ7|CLPP_ZYGCR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|61393665|gb|AAX45807.1| proteolytic subunit 2 of clp protease [Zygnema circumcarinatum]
          Length = 211

 Score =  214 bits (545), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 75/191 (39%), Positives = 122/191 (63%), Gaps = 3/191 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+RL ++R++F+   ++D +A  +   +++L  EN  K++ 
Sbjct: 5   VPKVPFRIPGEEDASWIDVYNRLYRDRLLFLGQDVDDEIANQLIGIMIYLNGENQSKDMY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG V AG+++YD MQF+ P + T CMG AASMGS +L+ GE   R ALP+AR++
Sbjct: 65  MYINSPGGAVLAGISVYDAMQFVVPDVHTICMGLAASMGSFILTGGEISKRLALPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  + GQA +    A++++K+K  + ++Y++  GK    + + ++RD  MSA EA
Sbjct: 125 IHQPASSFYEGQAGECMIEAEEVLKLKDCVTKVYMQRTGKPMAVISEDMERDVFMSAKEA 184

Query: 196 CDWGVVDKVLM 206
             +G+VD V  
Sbjct: 185 QAYGIVDLVAT 195


>gi|28202196|ref|NP_777437.1| ATP-dependent Clp protease proteolytic subunit [Anthoceros
           formosae]
 gi|41688497|sp|Q85BZ1|CLPP_ANTFO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|27807898|dbj|BAC55373.1| ATP-dependent protease proteolytic subunit exon3 [Anthoceros
           formosae]
 gi|27808041|dbj|BAC55470.1| ATP-dependent protease proteolytic subunit [Anthoceros formosae]
          Length = 204

 Score =  214 bits (545), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 78/189 (41%), Positives = 123/189 (65%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+RL +ER++F+   ++D +A  +   +++L  E+  K++ 
Sbjct: 5   VPKVPFRLPGEEDAVWIDVYNRLYRERLLFLGQHVDDEIANQLIGIMMYLNGEDESKDMY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG V AG+++YDTMQF+ P + T CMG AASMGS +L+ GE   R ALP+ARI+
Sbjct: 65  LYINSPGGAVLAGISVYDTMQFVVPDVHTICMGLAASMGSFILTGGEITKRIALPHARIM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  + GQA +    A++++K++  + ++YV+  GK    + + ++RD  MSA EA
Sbjct: 125 IHQPASSYYDGQAGECIMEAEEVLKLRDCITKVYVQRTGKPLWVISEDMERDVFMSAKEA 184

Query: 196 CDWGVVDKV 204
             +G+VD V
Sbjct: 185 QIYGIVDFV 193


>gi|41408378|ref|NP_961214.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium avium
           subsp. paratuberculosis K-10]
 gi|118462339|ref|YP_880941.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium avium
           104]
 gi|254774530|ref|ZP_05216046.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium avium
           subsp. avium ATCC 25291]
 gi|67460506|sp|Q73XM9|CLPP1_MYCPA RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|41396734|gb|AAS04597.1| ClpP2 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118163626|gb|ABK64523.1| Clp protease [Mycobacterium avium 104]
          Length = 211

 Score =  214 bits (545), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 86/194 (44%), Positives = 130/194 (67%), Gaps = 2/194 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +E ++ G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE+ +P ++I++
Sbjct: 12  ILPSFIEHSSFGIKESNPYNKLFEERIIFLGVQVDDASANDIMAQLLVLESLDPDRDITM 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++  I T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 72  YINSPGGGFTSLMAIYDTMQYVRADIQTVCLGQAASAAAVLLAAGTPGKRMALPNARVLI 131

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQPS  G   GQ SD+E  A +I +++  +     ++ GK    + K  DRD I++A EA
Sbjct: 132 HQPSLQGVIQGQFSDLEIQAAEIERMRTLMETTLARHTGKDAATIRKDTDRDKILTAEEA 191

Query: 196 CDWGVVDKVLMSRI 209
            D+G++D VL  R 
Sbjct: 192 KDYGIIDTVLEYRK 205


>gi|2921510|gb|AAC04810.1| clp-like energy-dependent protease [Fritillaria agrestis]
          Length = 267

 Score =  213 bits (544), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 74/191 (38%), Positives = 119/191 (62%), Gaps = 4/191 (2%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            ++P V+  T  G    D+ S L + RI+F+   +   +A  + +QL+ L   + + +I 
Sbjct: 79  PMMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPVNSQVAQRVISQLVTLATIDEESDIL 134

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+N PGG   + +AIYD M +IKP + T C G AAS G+LLL+ GEKGMR+ +PNARI+
Sbjct: 135 VYLNCPGGSTYSILAIYDCMSWIKPKVGTVCFGVAASQGALLLAGGEKGMRYTMPNARIM 194

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP  G  G   D+ R   + V+ + +++++Y    G+T E+V++  +RD   SASEA 
Sbjct: 195 IHQPQSGCGGHVEDVRRQVNEAVQSRHKIDQMYAAFTGQTLEKVQEYTERDRFFSASEAL 254

Query: 197 DWGVVDKVLMS 207
           ++G+VD VL +
Sbjct: 255 EFGLVDGVLET 265


>gi|118482644|gb|ABK93241.1| unknown [Populus trichocarpa]
          Length = 297

 Score =  213 bits (544), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 81/188 (43%), Positives = 121/188 (64%), Gaps = 1/188 (0%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P     + RG  + D    LL+ERIVF+   I+D +A  I +QLL L+A++P K+I L++
Sbjct: 71  PQTPATSMRGAET-DAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFV 129

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           N PGG ++A MAIYD +Q ++  +ST  +G +AS  S++L  G KG RFA+PN RI++HQ
Sbjct: 130 NCPGGSLSASMAIYDVVQLVRADVSTIALGISASTASIILGGGTKGKRFAMPNTRIMIHQ 189

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG SGQA D+E  A++I+  K  +  I      +T E+V+K +DRD  MS  EA ++G
Sbjct: 190 PLGGASGQAIDVEIQAREIMHNKNNIIRIVSGFTSRTVEQVQKDMDRDRYMSPIEAVEYG 249

Query: 200 VVDKVLMS 207
           ++D V+  
Sbjct: 250 IIDGVIDR 257


>gi|227495367|ref|ZP_03925683.1| endopeptidase Clp [Actinomyces coleocanis DSM 15436]
 gi|226831121|gb|EEH63504.1| endopeptidase Clp [Actinomyces coleocanis DSM 15436]
          Length = 211

 Score =  213 bits (544), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 90/193 (46%), Positives = 135/193 (69%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V E+T+ G +  D YS+L ++RIVF+  Q++D  A  I AQLL LE+++P   I++
Sbjct: 18  VLPEVEERTSYGVKRLDPYSKLFQDRIVFLGVQVDDASADDIMAQLLVLESQDPDSMITM 77

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+IKP + T C+GQAAS  ++LL+ G  G R ALPNAR+++
Sbjct: 78  YINSPGGSFTAMTAIYDTMQYIKPQVQTVCLGQAASAAAVLLAGGAPGRRLALPNARVMI 137

Query: 138 HQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+     GQASDIE  A+++ +++  L E    + G+  E+V + +DRD I++A +A 
Sbjct: 138 HQPAMEGMRGQASDIEIVAEEMERMRTWLEETIAHHSGREIEQVRRDIDRDKILTAQQAL 197

Query: 197 DWGVVDKVLMSRI 209
           ++G++D+VL SR 
Sbjct: 198 EYGLIDQVLTSRK 210


>gi|15609597|ref|NP_216976.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis H37Rv]
 gi|15841984|ref|NP_337021.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis CDC1551]
 gi|31793641|ref|NP_856134.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium bovis
           AF2122/97]
 gi|121638343|ref|YP_978567.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|148662295|ref|YP_001283818.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis H37Ra]
 gi|148823660|ref|YP_001288414.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis F11]
 gi|167969784|ref|ZP_02552061.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis H37Ra]
 gi|215404396|ref|ZP_03416577.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis 02_1987]
 gi|215412217|ref|ZP_03420979.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis 94_M4241A]
 gi|215427843|ref|ZP_03425762.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis T92]
 gi|215431406|ref|ZP_03429325.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis EAS054]
 gi|215446706|ref|ZP_03433458.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis T85]
 gi|218754192|ref|ZP_03532988.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis GM 1503]
 gi|219558457|ref|ZP_03537533.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis T17]
 gi|224990837|ref|YP_002645524.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|253798461|ref|YP_003031462.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis KZN 1435]
 gi|254232594|ref|ZP_04925921.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           (endopeptidase clp 2) [Mycobacterium tuberculosis C]
 gi|254365236|ref|ZP_04981282.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           (endopeptidase clp 2) [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254551508|ref|ZP_05141955.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260187467|ref|ZP_05764941.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis CPHL_A]
 gi|260201585|ref|ZP_05769076.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis T46]
 gi|260205764|ref|ZP_05773255.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis K85]
 gi|289443986|ref|ZP_06433730.1| clp protease [Mycobacterium tuberculosis T46]
 gi|289448103|ref|ZP_06437847.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis CPHL_A]
 gi|289553749|ref|ZP_06442959.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis KZN 605]
 gi|289570615|ref|ZP_06450842.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis T17]
 gi|289575154|ref|ZP_06455381.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis K85]
 gi|289746242|ref|ZP_06505620.1| ATP-dependent Clp protease proteolytic subunit ClpP2 [Mycobacterium
           tuberculosis 02_1987]
 gi|289751066|ref|ZP_06510444.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis T92]
 gi|289754568|ref|ZP_06513946.1| ATP-dependent Clp protease proteolytic subunit ClpP2 [Mycobacterium
           tuberculosis EAS054]
 gi|289758592|ref|ZP_06517970.1| endopeptidase Clp 2 [Mycobacterium tuberculosis T85]
 gi|289762629|ref|ZP_06522007.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           (endopeptidase clp 2) [Mycobacterium tuberculosis GM
           1503]
 gi|294994432|ref|ZP_06800123.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis 210]
 gi|297635066|ref|ZP_06952846.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis KZN 4207]
 gi|297732057|ref|ZP_06961175.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis KZN R506]
 gi|298525938|ref|ZP_07013347.1| ATP-dependent Clp protease proteolytic subunit 2 [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306776730|ref|ZP_07415067.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis SUMu001]
 gi|306780503|ref|ZP_07418840.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis SUMu002]
 gi|306785255|ref|ZP_07423577.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis SUMu003]
 gi|306789614|ref|ZP_07427936.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis SUMu004]
 gi|306793941|ref|ZP_07432243.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis SUMu005]
 gi|306798335|ref|ZP_07436637.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis SUMu006]
 gi|306804211|ref|ZP_07440879.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis SUMu008]
 gi|306808781|ref|ZP_07445449.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis SUMu007]
 gi|306968613|ref|ZP_07481274.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis SUMu009]
 gi|306972840|ref|ZP_07485501.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis SUMu010]
 gi|307080546|ref|ZP_07489716.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis SUMu011]
 gi|307085144|ref|ZP_07494257.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis SUMu012]
 gi|313659393|ref|ZP_07816273.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           tuberculosis KZN V2475]
 gi|54036853|sp|P63784|CLPP2_MYCBO RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|54040891|sp|P63783|CLPP2_MYCTU RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|2791500|emb|CAA16037.1| PROBABLE ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 2 CLPP2
           (ENDOPEPTIDASE CLP 2) [Mycobacterium tuberculosis H37Rv]
 gi|13882258|gb|AAK46835.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mycobacterium
           tuberculosis CDC1551]
 gi|31619234|emb|CAD97348.1| PROBABLE ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 2 CLPP2
           (ENDOPEPTIDASE CLP 2) [Mycobacterium bovis AF2122/97]
 gi|121493991|emb|CAL72468.1| Probable ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|124601653|gb|EAY60663.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           (endopeptidase clp 2) [Mycobacterium tuberculosis C]
 gi|134150750|gb|EBA42795.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           (endopeptidase clp 2) [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148506447|gb|ABQ74256.1| ATP-dependent Clp protease proteolytic subunit ClpP2 [Mycobacterium
           tuberculosis H37Ra]
 gi|148722187|gb|ABR06812.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis F11]
 gi|224773950|dbj|BAH26756.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|253319964|gb|ACT24567.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis KZN 1435]
 gi|289416905|gb|EFD14145.1| clp protease [Mycobacterium tuberculosis T46]
 gi|289421061|gb|EFD18262.1| ATP-dependent clp protease proteolytic subunit 1 clpP1
           [Mycobacterium tuberculosis CPHL_A]
 gi|289438381|gb|EFD20874.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis KZN 605]
 gi|289539585|gb|EFD44163.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis K85]
 gi|289544369|gb|EFD48017.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis T17]
 gi|289686770|gb|EFD54258.1| ATP-dependent Clp protease proteolytic subunit ClpP2 [Mycobacterium
           tuberculosis 02_1987]
 gi|289691653|gb|EFD59082.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis T92]
 gi|289695155|gb|EFD62584.1| ATP-dependent Clp protease proteolytic subunit ClpP2 [Mycobacterium
           tuberculosis EAS054]
 gi|289710135|gb|EFD74151.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           (endopeptidase clp 2) [Mycobacterium tuberculosis GM
           1503]
 gi|289714156|gb|EFD78168.1| endopeptidase Clp 2 [Mycobacterium tuberculosis T85]
 gi|298495732|gb|EFI31026.1| ATP-dependent Clp protease proteolytic subunit 2 [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308214890|gb|EFO74289.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis SUMu001]
 gi|308326651|gb|EFP15502.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis SUMu002]
 gi|308330077|gb|EFP18928.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis SUMu003]
 gi|308333917|gb|EFP22768.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis SUMu004]
 gi|308337720|gb|EFP26571.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis SUMu005]
 gi|308341401|gb|EFP30252.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis SUMu006]
 gi|308344887|gb|EFP33738.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis SUMu007]
 gi|308349198|gb|EFP38049.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis SUMu008]
 gi|308353819|gb|EFP42670.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis SUMu009]
 gi|308357768|gb|EFP46619.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis SUMu010]
 gi|308361713|gb|EFP50564.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis SUMu011]
 gi|308365323|gb|EFP54174.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis SUMu012]
 gi|323718966|gb|EGB28116.1| ATP-dependent Clp protease proteolytic subunit 2 ClpP2
           [Mycobacterium tuberculosis CDC1551A]
 gi|326904074|gb|EGE51007.1| ATP-dependent Clp protease proteolytic subunit 2 ClpP2
           [Mycobacterium tuberculosis W-148]
 gi|328458229|gb|AEB03652.1| ATP-dependent clp protease proteolytic subunit 2 clpP2
           [Mycobacterium tuberculosis KZN 4207]
          Length = 214

 Score =  213 bits (544), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 86/194 (44%), Positives = 130/194 (67%), Gaps = 2/194 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +E ++ G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE+ +P ++I++
Sbjct: 15  ILPSFIEHSSFGVKESNPYNKLFEERIIFLGVQVDDASANDIMAQLLVLESLDPDRDITM 74

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++  I T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 75  YINSPGGGFTSLMAIYDTMQYVRADIQTVCLGQAASAAAVLLAAGTPGKRMALPNARVLI 134

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP  SG   GQ SD+E  A +I +++  +     ++ GK    + K  DRD I++A EA
Sbjct: 135 HQPSLSGVIQGQFSDLEIQAAEIERMRTLMETTLARHTGKDAGVIRKDTDRDKILTAEEA 194

Query: 196 CDWGVVDKVLMSRI 209
            D+G++D VL  R 
Sbjct: 195 KDYGIIDTVLEYRK 208


>gi|225446742|ref|XP_002282652.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 291

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 84/181 (46%), Positives = 123/181 (67%), Gaps = 1/181 (0%)

Query: 27  NRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVV 86
            RG  + D    LLKERIVF+   ++D +A  I +QLL L+A++P K+I L+INSPGG +
Sbjct: 72  ARGAEA-DAMGLLLKERIVFLGNNVDDFVADAIISQLLLLDAQDPTKDIRLFINSPGGSL 130

Query: 87  TAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG 146
           +A MAIYD +Q ++  +ST  +G +AS  S++L  G KG RFA+PN RI++HQP GG SG
Sbjct: 131 SATMAIYDIVQLVRADVSTVALGISASTASIILGGGTKGKRFAMPNTRIMIHQPLGGASG 190

Query: 147 QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           QA D+E  AQ+I+  K  + +I     G+++E+VEK +DRD  MS  EA ++G++D V+ 
Sbjct: 191 QAIDVEIQAQEIMHNKSNVTKIIAGFSGRSFEQVEKDIDRDRYMSPIEAVEYGIIDAVID 250

Query: 207 S 207
            
Sbjct: 251 R 251


>gi|145223176|ref|YP_001133854.1| ATP-dependent Clp protease proteolytic subunit [Mycobacterium
           gilvum PYR-GCK]
 gi|315443633|ref|YP_004076512.1| ATP-dependent Clp protease proteolytic subunit ClpP [Mycobacterium
           sp. Spyr1]
 gi|145215662|gb|ABP45066.1| ATP-dependent Clp protease proteolytic subunit ClpP [Mycobacterium
           gilvum PYR-GCK]
 gi|315261936|gb|ADT98677.1| ATP-dependent Clp protease proteolytic subunit ClpP [Mycobacterium
           sp. Spyr1]
          Length = 215

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 85/194 (43%), Positives = 131/194 (67%), Gaps = 2/194 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  +E ++ G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE+ +P ++I++
Sbjct: 16  ILPSFIEHSSFGVKESNPYNKLFEERIIFLGVQVDDASANDIMAQLLVLESLDPDRDITM 75

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++  I T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 76  YINSPGGSFTSLMAIYDTMQYVRADIQTVCLGQAASAAAVLLAAGTPGKRMALPNARVLI 135

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+  G   GQ SD+E  A +I +++  + E    + GK  + + K  DRD I++A+ A
Sbjct: 136 HQPALGGVIQGQFSDLEIQAAEIERMRTLMEETLSLHTGKPADVIRKDTDRDKILTAAAA 195

Query: 196 CDWGVVDKVLMSRI 209
            D+G++D VL  R 
Sbjct: 196 KDYGIIDTVLEYRK 209


>gi|308276963|gb|ADO26862.1| ATP-dependent Clp protease proteolytic subunit 1 [Corynebacterium
           pseudotuberculosis I19]
          Length = 209

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 83/210 (39%), Positives = 134/210 (63%), Gaps = 5/210 (2%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           M+  G         +  ++P  +E    G +  + Y++L +ERI+F+  Q++D  A  I 
Sbjct: 1   MTTSGMQ--MPSARY--VLPSFIEHATYGTKETNPYAKLFEERIIFLGTQVDDTSANDIM 56

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLL LE  +P ++I++YINSPGG  T+ MAIYDTMQ+++P + T C+GQAAS  ++LL+
Sbjct: 57  AQLLVLEGLDPDRDITMYINSPGGSFTSLMAIYDTMQYVRPDVRTVCLGQAASAAAVLLA 116

Query: 121 AGEKGMRFALPNARILLHQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
           AG  G R  LPN+R+L+HQP+     GQ SD+E  A++I +++  + +   ++ G+T E+
Sbjct: 117 AGAPGKRACLPNSRVLIHQPATQGTQGQVSDLEIQAKEIERMRTLMEQTLSRHTGRTPEQ 176

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           V    DRD I++A EA ++G++D+V   R 
Sbjct: 177 VRIDTDRDKILTAQEAVEYGIIDQVFDYRK 206


>gi|183217765|ref|YP_001837385.1| ATP-dependent Clp protease proteolytic subunit [Guizotia
           abyssinica]
 gi|179366280|gb|ACB86551.1| clp protease proteolytic subunit [Guizotia abyssinica]
          Length = 196

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 74/189 (39%), Positives = 121/189 (64%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     DIY+RL +ER++F+  +++  ++  +   +++L  E+  +++ 
Sbjct: 5   VPKVPFRSPGEEDASWVDIYNRLYRERLLFLGQEVDSEISNQLIGLMIYLSIEDDTQDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+A+YDTMQF++P + T CMG AASMGS +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGVALYDTMQFVQPDVHTICMGSAASMGSFILVGGEITKRLAFPHARVM 124

Query: 137 LHQPSGGFSGQAS-DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP+G FS  A+ +      +++K++  L  +YV+  GK    V + ++RD  MSA+EA
Sbjct: 125 IHQPAGSFSEVATGEFILEVGELLKLRETLTRVYVQRTGKPLWVVSEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
             +G+VD V
Sbjct: 185 QAYGIVDLV 193


>gi|68052061|sp|Q5QA83|CLPP_ACOGR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|56122453|gb|AAV74350.1| ClpP [Acorus gramineus]
          Length = 202

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 72/189 (38%), Positives = 117/189 (61%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V+  +   E     DIY+RL +ER++F+  +++  ++  +   +++L  E+  ++  
Sbjct: 5   VPKVLFGSPGEEDAAWVDIYNRLHRERLLFLGQELDSEISNQLVGLMVYLSIEDKTRDFF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+ +YDTMQF+ P + T CMG AASMGS +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGIGLYDTMQFVPPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  QA +    A++++K++  L  +YV+  GK    V + ++RD  +SA+EA
Sbjct: 125 IHQPASSFYEAQAGEFVLEAEELLKLRETLTRVYVQRTGKPLWVVSEDMERDVFLSATEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGIVDLV 193


>gi|166235575|gb|ABY85489.1| ATP-dependent protease proteolytic subunit [Silene samia]
          Length = 196

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 73/189 (38%), Positives = 118/189 (62%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     D+Y+RL +ER++F+  +++  ++  +   +++L  E+  K++ 
Sbjct: 5   VPKVPFRSPGEEDASWVDVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AI DTMQF++P + T CMG AASMGS +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGVAIXDTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  L  +YV+  GK    V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQTGEFILEAEELLKLRETLTRVYVQRTGKPIWVVSEDMERDVFMSAAEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGIVDLV 193


>gi|271969827|ref|YP_003344023.1| endopeptidase Clp [Streptosporangium roseum DSM 43021]
 gi|270513002|gb|ACZ91280.1| Endopeptidase Clp [Streptosporangium roseum DSM 43021]
          Length = 196

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 77/190 (40%), Positives = 125/190 (65%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+ Q  RGER  D+YS LL ERIV++   I+  +A  + AQ +FLE+ENP   I  Y
Sbjct: 6   IPNVIAQNPRGERIMDVYSHLLTERIVYLGTAIDAGVANALVAQFIFLESENPDASIQFY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           IN  GG  +A +AIYDTM++I+P + T C+GQA ++G++LL+AG +G R ALP+AR++LH
Sbjct: 66  INCEGGDPSAMLAIYDTMRYIRPRVETTCVGQAIAVGAVLLAAGAEGKRAALPHARVILH 125

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP+    G   D+   A ++V+++  +  I  ++ G+T E +    D D + +A+ A ++
Sbjct: 126 QPAAQGRGTIPDLILQADEVVRVRADIERILSRHTGQTVETLRADTDHDRVFTATAALEY 185

Query: 199 GVVDKVLMSR 208
           G++D+++  R
Sbjct: 186 GLLDQIIEER 195


>gi|289448104|ref|ZP_06437848.1| LOW QUALITY PROTEIN: ATP-dependent clp protease proteolytic subunit
           2 clpP2 [Mycobacterium tuberculosis CPHL_A]
 gi|289421062|gb|EFD18263.1| LOW QUALITY PROTEIN: ATP-dependent clp protease proteolytic subunit
           2 clpP2 [Mycobacterium tuberculosis CPHL_A]
          Length = 200

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 82/169 (48%), Positives = 114/169 (67%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           +  +Y RLL ERI+F+  ++ D +A  +CAQ+L L AE+  K+ISLYINSPGG ++AGMA
Sbjct: 17  TDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMA 76

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYDTM      I+T+ MG AASMG  LL+AG KG R+ALP+ARIL+HQP GG +G A+DI
Sbjct: 77  IYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADI 136

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
              A+    IK+ +  +  +  G+  E +E   DRD   +A+EA ++G 
Sbjct: 137 AIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGF 185


>gi|183601398|ref|ZP_02962768.1| ATP-dependent Clp protease proteolytic subunit 2 [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219683455|ref|YP_002469838.1| ATP-dependent Clp protease proteolytic subunit 2 [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|241191102|ref|YP_002968496.1| ATP-dependent Clp protease proteolytic subunit 2 [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|241196508|ref|YP_002970063.1| ATP-dependent Clp protease proteolytic subunit 2 [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|183219004|gb|EDT89645.1| ATP-dependent Clp protease proteolytic subunit 2 [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219621105|gb|ACL29262.1| ATP-dependent Clp protease proteolytic subunit 2 [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|240249494|gb|ACS46434.1| ATP-dependent Clp protease proteolytic subunit 2 [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240251062|gb|ACS48001.1| ATP-dependent Clp protease proteolytic subunit 2 [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|289178846|gb|ADC86092.1| ClpP [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295794091|gb|ADG33626.1| ATP-dependent Clp protease proteolytic subunit 2 [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 204

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 85/188 (45%), Positives = 128/188 (68%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P +  +      +  I++RLLK+RI+++  +++D MA  ICAQ+L L AE+P+ +I LYI
Sbjct: 8   PRMAGEDMPAGPADPIFNRLLKDRIIWLGEEVKDDMANRICAQMLMLAAEDPKSDIWLYI 67

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG +TAGMAIYDTMQ I+P ++T  +G  ASMG  LLS+G KG RF   +AR+L+HQ
Sbjct: 68  NSPGGSITAGMAIYDTMQLIEPDVATVGIGMCASMGQFLLSSGTKGKRFLTSHARVLMHQ 127

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           PSGG  G  +D+  +A+ I+ +K+ L E+  +  G T EE+ +  + DH  +A EA ++G
Sbjct: 128 PSGGIGGTTTDVRINAELIMDMKKTLGELTAEQTGHTIEEIYRDNEYDHWFTAEEALEYG 187

Query: 200 VVDKVLMS 207
            VDK++ +
Sbjct: 188 FVDKLVST 195


>gi|224283329|ref|ZP_03646651.1| ATP-dependent Clp protease proteolytic subunit 2 [Bifidobacterium
           bifidum NCIMB 41171]
 gi|310287699|ref|YP_003938957.1| ATP-dependent Clp protease proteolytic subunit 1 [Bifidobacterium
           bifidum S17]
 gi|311064597|ref|YP_003971322.1| ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           bifidum PRL2010]
 gi|313140481|ref|ZP_07802674.1| ATP-dependent Clp protease proteolytic subunit 2 [Bifidobacterium
           bifidum NCIMB 41171]
 gi|309251635|gb|ADO53383.1| ATP-dependent Clp protease proteolytic subunit 1 [Bifidobacterium
           bifidum S17]
 gi|310866916|gb|ADP36285.1| Clp ATP-dependent Clp protease proteolytic subunit [Bifidobacterium
           bifidum PRL2010]
 gi|313132991|gb|EFR50608.1| ATP-dependent Clp protease proteolytic subunit 2 [Bifidobacterium
           bifidum NCIMB 41171]
          Length = 203

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 84/173 (48%), Positives = 127/173 (73%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I++RLLK+RI+++  +++D MA  ICAQ+L L AE+P+K+I LYINSPGG +TAGMAIYD
Sbjct: 23  IFNRLLKDRIIWMGEEVKDDMANRICAQMLMLAAEDPKKDIWLYINSPGGSITAGMAIYD 82

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ I+P ++T  +G  ASMG  LLS+G KG RF   +AR+L+HQPSGG  G  +D+  +
Sbjct: 83  TMQLIQPDVATVGLGMCASMGQFLLSSGTKGKRFLTSHARVLMHQPSGGIGGTTTDVRIN 142

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+ I+ +K+ ++E+  +  G T EE+ +  + DH  +A+EA ++G VDK++ +
Sbjct: 143 AELIMDMKKTMSELTAEQTGHTVEEIYRDNEYDHWFTATEALEYGFVDKIITT 195


>gi|94502515|ref|YP_588142.1| ATP-dependent Clp protease proteolytic subunit [Helianthus annuus]
 gi|122179559|sp|Q1KXT4|CLPP_HELAN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|88656919|gb|ABD47170.1| clp protease proteolytic subunit [Helianthus annuus]
          Length = 196

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 74/189 (39%), Positives = 121/189 (64%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     DIY+RL +ER++F+  +++  ++  +   +++L  E+  +++ 
Sbjct: 5   VPKVPFRSPGEEDASWVDIYNRLYRERLLFLGQEVDSEISNQLIGLMIYLSIEDDTQDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+A+YDTMQF++P + T CMG AASMGS +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGVALYDTMQFVQPDVHTICMGSAASMGSFILVGGEITKRLAFPHARVM 124

Query: 137 LHQPSGGFSGQAS-DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP+G FS  A+ +      +++K++  L  +YV+  GK    V + ++RD  MSA+EA
Sbjct: 125 IHQPAGSFSEVATGEFILEVGELLKLRETLTRVYVQRTGKPVWVVSEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
             +G+VD V
Sbjct: 185 QAYGIVDLV 193


>gi|115604958|ref|YP_784411.1| clp protease proteolytic subunit [Drimys granadensis]
 gi|122164416|sp|Q06GX2|CLPP_DRIGR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|112032686|gb|ABH88321.1| clp protease proteolytic subunit [Drimys granadensis]
          Length = 202

 Score =  213 bits (542), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 70/189 (37%), Positives = 116/189 (61%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     D+Y+RL +ER++F+  +++  ++  +   +++L  E+  +++ 
Sbjct: 5   VPKVPFRSPGEEDAVWVDVYNRLHRERLLFLGQEVDSEISNQLVGLMVYLSIEDDTRDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYDTMQF+ P + T CMG AASMGS +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGIAIYDTMQFVPPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +     +    A++++K++  L  +YV+  G     + + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAPTGEFILEAEELLKLRETLTRVYVQRTGNPLWVISEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGIVDVV 193


>gi|326330021|ref|ZP_08196335.1| Clp protease [Nocardioidaceae bacterium Broad-1]
 gi|325952229|gb|EGD44255.1| Clp protease [Nocardioidaceae bacterium Broad-1]
          Length = 210

 Score =  213 bits (542), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 81/177 (45%), Positives = 116/177 (65%)

Query: 29  GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTA 88
           G     + +RL  +RI+ +  +++D +A  ICAQLL L AE+P ++ISLYINSPGG VTA
Sbjct: 9   GPLDEQLTARLQNQRIIVLGQEVDDAIANRICAQLLLLSAEDPHRDISLYINSPGGSVTA 68

Query: 89  GMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQA 148
           GMAIYD M  I   +ST  MG AASMG  LL+AG  G R+ LP+  +LLH+ S G  G A
Sbjct: 69  GMAIYDVMHLIPNDVSTLGMGMAASMGQFLLTAGTPGKRYVLPHTEVLLHKGSAGIGGSA 128

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           +DIE  A  + ++ +++ EI   + G++ E++++   RD   +A EA D+G VD+VL
Sbjct: 129 ADIEVQAARLARMTQQMLEITAAHTGQSVEQIDQDSLRDRWFTAEEARDYGFVDEVL 185


>gi|86141806|ref|ZP_01060330.1| Protease subunit of ATP-dependent Clp protease [Leeuwenhoekiella
           blandensis MED217]
 gi|85831369|gb|EAQ49825.1| Protease subunit of ATP-dependent Clp protease [Leeuwenhoekiella
           blandensis MED217]
          Length = 181

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 91/181 (50%), Positives = 128/181 (70%), Gaps = 1/181 (0%)

Query: 25  QTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG 84
           +T +G+    I ++LL+ER VF+ GQ++D  A  +  +LL+L+A +   EI  YINSPGG
Sbjct: 2   ETKKGKPQDLIDAKLLEERKVFLWGQVDDKSAKHVVDRLLYLDALSND-EIQFYINSPGG 60

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
            VT+G +IYDT++ IK P+ST C G AASMGS+LLS GEKG RF  P+AR+++HQPSGG 
Sbjct: 61  YVTSGFSIYDTIKSIKSPVSTICTGLAASMGSILLSVGEKGRRFIQPHARVMIHQPSGGA 120

Query: 145 SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            GQASDIE  AQ+I+K K    +I   NCG+ +++V K  +RDH M A E+  +G+VD +
Sbjct: 121 RGQASDIEITAQEILKTKELSAKILADNCGQDFDKVMKDFNRDHWMGAEESVAYGIVDGI 180

Query: 205 L 205
           +
Sbjct: 181 V 181


>gi|290489444|gb|ADD31106.1| clp protease proteolytic subunit protein [Meliosma aff. cuneifolia
           Moore 333]
          Length = 202

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 73/189 (38%), Positives = 116/189 (61%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     D+Y+RL +ER++F+   +E  ++  +   +++L  E+  +++ 
Sbjct: 5   VPKVPFRSPGEEDAIWVDVYNRLHRERLLFLGQGVESEISNQLIGLMVYLSIEDDTRDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYDTMQF+ P + T CMG AASMGS +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGIAIYDTMQFVPPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  L  +YV+  G     V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQTGEFILEAEELLKLRETLTRVYVQRTGNPLWVVSEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGIVDLV 193


>gi|113170419|ref|YP_717211.1| ClpP [Ostreococcus tauri]
 gi|122228950|sp|Q0P3P4|CLPP_OSTTA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|112806826|emb|CAL36333.1| ClpP [Ostreococcus tauri]
          Length = 200

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 73/193 (37%), Positives = 123/193 (63%), Gaps = 2/193 (1%)

Query: 19  VPMVVEQTNR--GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +       +  D+Y+RL +ER++F+   ++D +A  +   +L+L AE+  + + 
Sbjct: 5   VPKVAYRLPGESTPQWVDLYNRLYRERVLFLGSGLDDELANQLNGIMLYLSAEDASRSLF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAG++++D M +++  ++T  +G AASM S +L+ GE+G R ALP+ R++
Sbjct: 65  LYINSPGGSVTAGLSVFDIMNYVQASVTTIGIGFAASMASFILAGGERGSRIALPHCRVM 124

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQAS++    ++IV+++R +  +YV   G+    +   LDRD  +SA EA 
Sbjct: 125 IHQPQGGMEGQASEVVLEKEEIVRLRRLIGRLYVDLTGQPLSTIANDLDRDKYLSAREAR 184

Query: 197 DWGVVDKVLMSRI 209
           ++G+VD V  +  
Sbjct: 185 EYGLVDLVATTET 197


>gi|295311752|ref|YP_003587490.1| Clp protease proteolytic subunit [Oncidium Gower Ramsey]
 gi|281188266|gb|ACT83132.1| Clp protease proteolytic subunit [Oncidium Gower Ramsey]
          Length = 203

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 71/189 (37%), Positives = 119/189 (62%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     D+Y+RL +ER++F+  +++  ++  +   +++L  E+  +++ 
Sbjct: 5   VPKVPFRSPGEEDAAWVDVYNRLHRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTRDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYDTMQF+ P + T CMG AASMGS +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGIAIYDTMQFVSPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  QA +    A++++K++  L ++YV+  G     + + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQAGEFILEAEELLKLRETLTKVYVQRTGNPLWVISEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
              G+V+ V
Sbjct: 185 QAHGIVNLV 193


>gi|50954514|ref|YP_061802.1| ATP-dependent Clp protease proteolytic subunit [Leifsonia xyli
           subsp. xyli str. CTCB07]
 gi|67460475|sp|Q6AFZ8|CLPP1_LEIXX RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|50950996|gb|AAT88697.1| ATP-dependent Clp protease proteolytic subunit [Leifsonia xyli
           subsp. xyli str. CTCB07]
          Length = 197

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 92/176 (52%), Positives = 120/176 (68%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
              ++ RLLK+RI+++  ++ D  A  I A+LL L AE+ +++I LYINSPGG +TAGMA
Sbjct: 7   QPSVFDRLLKDRIIWLGSEVRDENANEIAAKLLLLAAEDSKRDIYLYINSPGGSITAGMA 66

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYDTMQF+   I T  +G AASMG LLL+AG KG R+  PNAR+LLHQP GGF G ASDI
Sbjct: 67  IYDTMQFVPNDIVTVGIGMAASMGQLLLTAGTKGKRYITPNARVLLHQPHGGFGGTASDI 126

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
              AQ I+ +K+RL EI  +  GKT ++V    DRD   +A EA D+G VD +  S
Sbjct: 127 RTQAQLILHMKKRLAEITSEATGKTVDQVNADGDRDRWFTAQEALDYGFVDHIRES 182


>gi|108796785|ref|YP_636436.1| ATP-dependent Clp protease proteolytic subunit [Staurastrum
           punctulatum]
 gi|122211785|sp|Q32RU0|CLPP_STAPU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|61393553|gb|AAX45694.1| proteolytic subunit 2 of clp protease [Staurastrum punctulatum]
          Length = 201

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 75/189 (39%), Positives = 123/189 (65%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+RL +ER++F+   ++D +A  +   +++L  E+  K++ 
Sbjct: 5   VPRVPFRLPGEEEAVWVDVYNRLYRERLLFLGQNVDDEIANQLIGIMIYLNGEDESKDMY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG V AG+++YD MQF+ P + T CMG AASMGS +L+ GE   R ALP+AR++
Sbjct: 65  MYINSPGGAVLAGISVYDAMQFVVPDVHTICMGLAASMGSFILTGGEITKRIALPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  + GQA +    A++++K++  + ++YV+  GK    + + ++RD  MSA EA
Sbjct: 125 IHQPASSYYDGQAGECMMEAEEVLKLRDCITKVYVQRTGKPAWLISEDMERDVFMSAKEA 184

Query: 196 CDWGVVDKV 204
            ++G+VD V
Sbjct: 185 QEYGIVDLV 193


>gi|306486010|gb|ADM92653.1| clp protease proteolytic subunit protein [Franklinia alatamaha]
          Length = 197

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 72/190 (37%), Positives = 119/190 (62%), Gaps = 4/190 (2%)

Query: 19  VPMVVEQTNRGERSYD---IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           VP V  ++   E +     + +RL +ER++F+  +++  ++  +   +++L  E+  K++
Sbjct: 5   VPKVPFRSPGEEDASWVDVLINRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDL 64

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            L+INSPGG V  G+AIYDTMQF++P + T CMG AASMGS +L  GE   R A P+AR+
Sbjct: 65  YLFINSPGGWVIPGVAIYDTMQFVQPDVHTICMGLAASMGSFILVGGEITKRLAFPHARV 124

Query: 136 LLHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           ++HQP S  +  Q  +    A++++K++  L  +YV+  GK    V + ++RD  MSA+E
Sbjct: 125 MIHQPASSFYEAQTGEFILEAEELLKLRETLTRVYVQRTGKPLWVVSEDMERDVFMSATE 184

Query: 195 ACDWGVVDKV 204
           A  +G+VD V
Sbjct: 185 AQAYGIVDLV 194


>gi|69214843|gb|AAZ03804.1| ATP-depedent Clp protease proteolytic subunit [Yucca schidigera]
          Length = 195

 Score =  212 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 71/188 (37%), Positives = 118/188 (62%), Gaps = 2/188 (1%)

Query: 19  VPMVVEQTNRGERSYDIY-SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           VP V  ++   E +  +  +RL +ER++F+  +++  ++  +   +++L  E+  K++ L
Sbjct: 5   VPKVPFRSPGEEDAVWVDVNRLYRERLLFLGQEVDSEISNQLVGLMVYLSIEDDTKDLYL 64

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           +INSPGG V  G+AIYDTMQF+ P + T CMG AASMGS +L  GE   R A P+AR+++
Sbjct: 65  FINSPGGWVIPGIAIYDTMQFVSPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMI 124

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP S  +  QA +    A++++K++  L ++YV+  G     + + ++RD  MSA+EA 
Sbjct: 125 HQPASSFYEAQAGEFILEAEELLKLRETLTKVYVQRTGNPLWVISEDMERDVFMSATEAQ 184

Query: 197 DWGVVDKV 204
             G+VD V
Sbjct: 185 AHGIVDLV 192


>gi|50954515|ref|YP_061803.1| ATP-dependent Clp protease proteolytic subunit [Leifsonia xyli
           subsp. xyli str. CTCB07]
 gi|67460474|sp|Q6AFZ7|CLPP2_LEIXX RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|50950997|gb|AAT88698.1| ATP-dependent Clp protease proteolytic subunit [Leifsonia xyli
           subsp. xyli str. CTCB07]
          Length = 223

 Score =  212 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 91/197 (46%), Positives = 136/197 (69%), Gaps = 2/197 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++RI+F+  Q++D  A  I AQLL LE+++P ++I +
Sbjct: 23  ILPSFEERTAYGYKRQDPYAKLFEDRIIFLGVQVDDASADDIMAQLLVLESQDPDRDIVM 82

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+++P I T  +GQAAS  ++L +AG  G R ALPNARIL+
Sbjct: 83  YINSPGGSFTAMTAIYDTMQYVRPQIQTVVLGQAASAAAVLTAAGAPGKRLALPNARILI 142

Query: 138 HQPS-GGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+ G    GQASDI   + +I +++  L E  VK+  +T E+V K ++RD+I+SA+EA
Sbjct: 143 HQPAVGEAGHGQASDILIQSNEINRMRAWLEETLVKHSSRTLEQVNKDIERDNILSATEA 202

Query: 196 CDWGVVDKVLMSRIDIE 212
             +G++D+VL SR  + 
Sbjct: 203 LKYGLIDQVLTSRKTLP 219


>gi|313836728|gb|EFS74442.1| Clp protease [Propionibacterium acnes HL037PA2]
 gi|314929866|gb|EFS93697.1| Clp protease [Propionibacterium acnes HL044PA1]
 gi|314972293|gb|EFT16390.1| Clp protease [Propionibacterium acnes HL037PA3]
 gi|328907723|gb|EGG27487.1| ATP-dependent Clp protease proteolytic subunit 2 [Propionibacterium
           sp. P08]
          Length = 244

 Score =  212 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 76/191 (39%), Positives = 126/191 (65%), Gaps = 2/191 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P   E+T+ G R  D Y++L ++RI+F+   + D +A  + AQLL L++ +  ++IS+Y
Sbjct: 53  IPQWEERTSYGVRRVDPYTKLFEDRIIFLGTPVTDDIANAVMAQLLCLQSMDADRQISMY 112

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TA  AIYDTM +++P + T C+G AAS  ++LL+AG KG R +LPN+ +L+H
Sbjct: 113 INSPGGSFTAMTAIYDTMNYVRPNVQTICLGMAASAAAVLLAAGAKGQRLSLPNSTVLIH 172

Query: 139 QPSG--GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           QP+      GQA+DIE    +I +I++ +  +     G++ E++ K +DRD  ++A  A 
Sbjct: 173 QPAMGQATYGQATDIEILDDEIQRIRKLMENMLATATGQSVEQISKDIDRDKYLTAQGAK 232

Query: 197 DWGVVDKVLMS 207
           ++G++D +L S
Sbjct: 233 EYGLIDDILTS 243


>gi|139387277|ref|YP_001123398.1| ATP-dependent Clp protease proteolytic subunit [Capsella
           bursa-pastoris]
 gi|139390177|ref|YP_001123750.1| ATP-dependent Clp protease proteolytic subunit [Lobularia maritima]
 gi|160380546|sp|A4QKL7|CLPP_CAPBU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|160380557|sp|A4QLL9|CLPP_LOBMA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|134286598|dbj|BAF50222.1| ATP-dependent protease subunit [Capsella bursa-pastoris]
 gi|134286954|dbj|BAF50574.1| ATP-dependent protease subunit [Lobularia maritima]
          Length = 196

 Score =  212 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 72/189 (38%), Positives = 117/189 (61%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNR--GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++         DIY+RL +ER+ F+  +++  ++  + + +++L  E   K++ 
Sbjct: 5   VPKVPFRSPGEGDTSWVDIYNRLYRERLFFLGQEVDTEISNQLISLMIYLSIEKDTKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V +GMAIYDTMQF++P + T CMG AAS+ S +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVISGMAIYDTMQFVRPDVQTICMGLAASIASFILVGGEITKRIAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  +  +YV+  GK    V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPIWVVSEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGIVDLV 193


>gi|291298893|ref|YP_003510171.1| endopeptidase Clp [Stackebrandtia nassauensis DSM 44728]
 gi|290568113|gb|ADD41078.1| Endopeptidase Clp [Stackebrandtia nassauensis DSM 44728]
          Length = 210

 Score =  212 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 82/194 (42%), Positives = 138/194 (71%), Gaps = 1/194 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP   E+T+ G +  + Y++L + R +F+   ++D  A  I +QLL LE ++P+++I +
Sbjct: 10  IVPSYTEKTSYGVKEMNPYNKLFENRTIFLGSPVDDTSANDIMSQLLVLEGDDPERDIEM 69

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA MAIYDTMQ+++P I T CMGQAAS  ++LL+AG KG R ALPN+R+++
Sbjct: 70  YINSPGGSLTALMAIYDTMQYVRPDIRTVCMGQAASAAAILLAAGAKGKRLALPNSRVII 129

Query: 138 HQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+     GQASD+E  A++I++++ ++ ++  ++ G+  ++V + ++RD I++A EA 
Sbjct: 130 HQPATEGTYGQASDMEIQAREIMRMRDQMEKVLARHTGQELDKVRRDIERDKILNADEAK 189

Query: 197 DWGVVDKVLMSRID 210
           ++G+VD V+  R  
Sbjct: 190 EYGIVDTVMEYRKK 203


>gi|7525058|ref|NP_051083.1| ATP-dependent Clp protease proteolytic subunit [Arabidopsis
           thaliana]
 gi|5360576|dbj|BAA82063.1| pClpP [Arabidopsis thaliana]
 gi|5881719|dbj|BAA84410.1| ATP-dependent protease subunit [Arabidopsis thaliana]
          Length = 196

 Score =  212 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 70/189 (37%), Positives = 116/189 (61%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNR--GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++         DIY+RL +ER+ F+  +++  ++  + + +++L  E   K++ 
Sbjct: 5   VPKVPFRSPGEGDTSWVDIYNRLYRERLFFLGQEVDTEISNQLISLMIYLSIEKDTKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V +GMAIYDTMQF++P + T CMG AAS+ S +L  G    R A P+AR++
Sbjct: 65  LFINSPGGWVISGMAIYDTMQFVRPDVQTICMGLAASIASFILVGGAITKRIAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  +  +YV+  GK    + + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPIWVISEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGIVDLV 193


>gi|297844024|ref|XP_002889893.1| hypothetical protein ARALYDRAFT_471314 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297335735|gb|EFH66152.1| hypothetical protein ARALYDRAFT_471314 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 271

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 123/206 (59%), Gaps = 6/206 (2%)

Query: 8   KKDSEDVFLGLV------PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICA 61
           K D++D   G++      P V+          D+ S L + RI+F+   I   +A  + +
Sbjct: 64  KIDNKDPRFGVIEAKKGNPPVMPSVMTPGGPLDLSSVLFRNRIIFIGQPINAQVAQRVIS 123

Query: 62  QLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSA 121
           QL+ L + + + +I +Y+N PGG   + +AIYD M +IKP + T   G AAS G+LLL+ 
Sbjct: 124 QLVTLASIDDKSDILMYLNCPGGSTYSVLAIYDCMSWIKPKVGTVAFGVAASQGALLLAG 183

Query: 122 GEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVE 181
           GEKGMR+A+PN R+++HQP  G  G   D+ R   + ++ +++++ +Y    G+  E+V+
Sbjct: 184 GEKGMRYAMPNTRVMIHQPQTGCGGHVEDVRRQVNEAIEARQKIDRMYAAFTGQPLEKVQ 243

Query: 182 KTLDRDHIMSASEACDWGVVDKVLMS 207
           +  +RD  +SASEA ++G++D +L +
Sbjct: 244 QYTERDRFLSASEALEFGLIDGLLET 269


>gi|260063635|ref|YP_003196715.1| putative ATP-dependent of ClpP protease, proteolytic subunit
           [Robiginitalea biformata HTCC2501]
 gi|88783080|gb|EAR14253.1| putative ATP-dependent of ClpP protease, proteolytic subunit
           [Robiginitalea biformata HTCC2501]
          Length = 182

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 87/179 (48%), Positives = 129/179 (72%), Gaps = 1/179 (0%)

Query: 28  RGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVT 87
           +G+    I +R+L+ER VF+ GQ++D  A  +  +LL+L+ +   KEI LYINSPGG VT
Sbjct: 5   KGKIQEQIDARMLEERKVFLWGQVDDDSAKHVIDRLLYLDLQ-NNKEIQLYINSPGGYVT 63

Query: 88  AGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQ 147
           +G +IYDT+  +K P+ST C G AASMGS+LLSAG+KG RF  P+AR+++HQPSGG  GQ
Sbjct: 64  SGFSIYDTITSLKSPVSTICSGLAASMGSILLSAGKKGRRFVQPHARVMIHQPSGGARGQ 123

Query: 148 ASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           AS+IE  A++I+K +    +I  +NCG+ +E++ K  +RD+ M A E+ ++G+VD +L 
Sbjct: 124 ASNIEIQAKEILKTREIGAQILAENCGQPFEKIMKDFNRDYWMDAKESVEYGIVDDILD 182


>gi|69214841|gb|AAZ03803.1| ATP-depedent Clp protease proteolytic subunit [Typha latifolia]
          Length = 195

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 71/188 (37%), Positives = 118/188 (62%), Gaps = 2/188 (1%)

Query: 19  VPMVVEQTNRGERSYDIY-SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           VP V  ++   E +  +  +RL +ER++F+  +++  ++  +   +++L  E+  +++ L
Sbjct: 5   VPKVPFRSPGEEDAVWVDVNRLYRERLLFLGQEVDSEISNQLVGLMVYLSIEDDTRDLYL 64

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           +INSPGG V  G+AIYDTMQF+ P + T CMG AASMGS +L  GE   R A P+AR+++
Sbjct: 65  FINSPGGWVIPGIAIYDTMQFVPPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMI 124

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP S  +  QA +    A++++K++  L ++YV+  G     V + ++RD  MSA+EA 
Sbjct: 125 HQPASSFYEAQAGEFILEAEELLKLRETLTKVYVQRTGNPLWVVSEDMERDVFMSATEAQ 184

Query: 197 DWGVVDKV 204
             G+VD V
Sbjct: 185 AHGIVDLV 192


>gi|224179410|ref|YP_002600868.1| proteolytic subunit 2 of clp protease [Pycnococcus provasolii]
 gi|217314453|gb|ACK36795.1| proteolytic subunit 2 of clp protease [Pycnococcus provasolii]
          Length = 224

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 75/194 (38%), Positives = 121/194 (62%), Gaps = 2/194 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    ++    D+Y+RL +ER++F+  +++D +   I   +L+L AE+  +   
Sbjct: 5   VPKVPYRLPGEQQAQWVDLYNRLYRERVLFLGQELDDELCNQIVGMMLYLSAEDSSQNQE 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VT G+A++DTM+ +   I T CMG AAS  S +L  G    R ALP+AR++
Sbjct: 65  LYINSPGGAVTCGLALFDTMEHVAANIITVCMGLAASTASFVLCGGTPLRRCALPHARVM 124

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQAS+I   + +I++++R++  +Y +  G++ ++V   +DRD   SA EA 
Sbjct: 125 IHQPEGGTRGQASEIIYESVEILRLRRQVGLLYAQRTGQSIDQVANDMDRDTFFSAEEAR 184

Query: 197 DWGVVDKVLMSRID 210
            +G+VD V    +D
Sbjct: 185 SYGLVDGVAYPDVD 198


>gi|254444482|ref|ZP_05057958.1| Clp protease [Verrucomicrobiae bacterium DG1235]
 gi|198258790|gb|EDY83098.1| Clp protease [Verrucomicrobiae bacterium DG1235]
          Length = 192

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 81/191 (42%), Positives = 119/191 (62%), Gaps = 2/191 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P   E+T     +  I  + L+ER +F+ GQ+ D  A  +  +L +LEA+ P K+I+ Y
Sbjct: 1   MPEKDEKTPDSPVASQIQKKFLEERKIFLWGQVSDESAKDVTEKLFYLEADAPGKDITFY 60

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           IN+PGG VTAG+AIYDT++ I   +     G AASMGS+LLSA +KG R   P+A++L+H
Sbjct: 61  INTPGGSVTAGLAIYDTIKLISSEVIVVVTGLAASMGSILLSAPKKGNRLLYPHAKVLIH 120

Query: 139 QP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           QP   G F G A DI   AQD+ K +  LN I     G+  +++++  DRD  MSA EA 
Sbjct: 121 QPLIGGQFQGPAVDIHIFAQDMEKTREELNRILADASGQPLDKIKEDTDRDFYMSAQEAI 180

Query: 197 DWGVVDKVLMS 207
           D+G+ D+++ S
Sbjct: 181 DYGLADRIIES 191


>gi|70699877|gb|AAZ06846.1| ClpP2 [Microbacterium arborescens]
          Length = 208

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 93/197 (47%), Positives = 135/197 (68%), Gaps = 2/197 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++R++F+  Q++D  A  + AQLL LE+++P ++I +
Sbjct: 7   ILPQFEERTAYGYKRQDPYNKLFEDRVIFLGVQVDDASADDVMAQLLVLESQDPDRDIIM 66

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ++ P I T  +GQAAS  S+LL+AG  G R ALPNARIL+
Sbjct: 67  YINSPGGSFTAMTAIYDTMQYVSPQIQTVVLGQAASAASVLLAAGAPGKRLALPNARILI 126

Query: 138 HQPS-GGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+ G    GQASDIE  A +I++++  L E   ++  +T E+V K +DRD I+SA EA
Sbjct: 127 HQPAVGEAGHGQASDIEIQAAEILRMRTWLEETMARHTNRTQEQVNKDIDRDKILSAHEA 186

Query: 196 CDWGVVDKVLMSRIDIE 212
            ++G+VD+VL SR    
Sbjct: 187 MEYGIVDQVLTSRKRTP 203


>gi|313199727|ref|YP_004021341.1| clp protease proteolytic subunit [Theobroma cacao]
 gi|309321291|gb|ADO64834.1| clp protease proteolytic subunit [Theobroma cacao]
 gi|328924805|gb|ADO64915.2| clp protease proteolytic subunit [Theobroma cacao]
          Length = 196

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 75/189 (39%), Positives = 118/189 (62%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     DIY+RL +ER++F+  +++  ++  +   +++L  EN  KE+ 
Sbjct: 5   VPKVPFRNPGEEDAVWVDIYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIENDTKELY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG +  G+AIYDTMQF++P + T CMG AASMGS +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGWIIPGVAIYDTMQFVQPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  +  +YV+  GK    V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDIFMSATEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGIVDLV 193


>gi|258652073|ref|YP_003201229.1| endopeptidase Clp [Nakamurella multipartita DSM 44233]
 gi|258555298|gb|ACV78240.1| Endopeptidase Clp [Nakamurella multipartita DSM 44233]
          Length = 229

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 95/197 (48%), Positives = 127/197 (64%), Gaps = 2/197 (1%)

Query: 12  EDVFLGLV-PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
           E +  GLV PM+   T     S  +  RLL+ERI+ +  ++ D  A  + AQLL L AE+
Sbjct: 19  EAIAPGLVDPMMRAGTPM-SLSDSVSERLLRERIILLGSEVRDTNANELTAQLLLLAAED 77

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
           P+++I+LYINSPGG VTAGMAIYDTM +I+P ++T  MG AASMG  LL+AG KG R AL
Sbjct: 78  PERDITLYINSPGGSVTAGMAIYDTMMWIEPDVATTAMGLAASMGQFLLTAGAKGKRAAL 137

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           P+ RIL+HQPS G  G A+DI   A  + K KR L E+   + G+  E +E   DRD   
Sbjct: 138 PHTRILMHQPSAGVGGTAADIAIQADMLTKSKRELTELQSLHTGQPIERIEVDQDRDRWF 197

Query: 191 SASEACDWGVVDKVLMS 207
           +A EA ++G +DKV+  
Sbjct: 198 TAQEALEYGFIDKVVSR 214


>gi|229822177|ref|YP_002883703.1| Endopeptidase Clp [Beutenbergia cavernae DSM 12333]
 gi|229568090|gb|ACQ81941.1| Endopeptidase Clp [Beutenbergia cavernae DSM 12333]
          Length = 205

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 78/186 (41%), Positives = 111/186 (59%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
           M  EQT       ++ SRLL +RI+ +   ++D +   +CAQLL L AE+P+ +ISL+IN
Sbjct: 1   MPREQTPTRPLDDELASRLLHQRIIVLGTGLDDVVGNRLCAQLLLLSAEDPRADISLWIN 60

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGG V A +AI+D M+ I   +ST  MG A S G  LLSAG  G RFAL +AR+LLHQ 
Sbjct: 61  SPGGSVPAMLAIHDVMRLIPNDVSTLAMGMAYSAGQFLLSAGTPGKRFALEHARVLLHQG 120

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
           S G  G A DIE  A D+   +  +  +   + G+  + V +   RD   +A EA ++G 
Sbjct: 121 SAGIGGTALDIEVQADDLRHTRDTVLGLIAAHTGQPIDRVAEDSQRDRYFTADEALEYGF 180

Query: 201 VDKVLM 206
           +D+V+ 
Sbjct: 181 IDRVVT 186


>gi|294790932|ref|ZP_06756090.1| Clp protease [Scardovia inopinata F0304]
 gi|294458829|gb|EFG27182.1| Clp protease [Scardovia inopinata F0304]
          Length = 216

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 84/193 (43%), Positives = 135/193 (69%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T+ G +  D Y++L ++RI+F+  Q++D  A  I AQLL LE+++P +++ L
Sbjct: 24  VMPQFEEKTSFGYKRSDPYTKLFEDRIIFMGVQVDDASADDIMAQLLVLESQDPDRDVVL 83

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL+AG KG R  LPNAR+L+
Sbjct: 84  YINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLAAGTKGKRLMLPNARVLI 143

Query: 138 HQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+ G   G+A++IE  A+++++++  L     K+ G+  E + K ++ D I++A +A 
Sbjct: 144 HQPAMGQDFGKATEIEIQAKELLRMREWLENTLAKHTGQDVERIRKDIETDTILTAEQAK 203

Query: 197 DWGVVDKVLMSRI 209
           ++G+VD +L  R 
Sbjct: 204 EYGMVDAILEHRK 216


>gi|139388119|ref|YP_001123311.1| ATP-dependent protease subunit [Barbarea verna]
 gi|139389443|ref|YP_001123140.1| ATP-dependent Clp protease proteolytic subunit [Olimarabidopsis
           pumila]
 gi|139389826|ref|YP_001123487.1| ATP-dependent Clp protease proteolytic subunit [Crucihimalaya
           wallichii]
 gi|160380544|sp|A4QKD0|CLPP_BARVE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|160380548|sp|A4QKV6|CLPP_CRUWA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|160380560|sp|A4QJV6|CLPP_OLIPU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|134286337|dbj|BAF49964.1| ATP-dependent protease subunit [Olimarabidopsis pumila]
 gi|134286510|dbj|BAF50135.1| ATP-dependent protease subunit [Barbarea verna]
 gi|134286688|dbj|BAF50311.1| ATP-dependent protease subunit [Crucihimalaya wallichii]
          Length = 196

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 71/189 (37%), Positives = 116/189 (61%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNR--GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++         DIY+RL +ER+ F+  +++  ++  + + +++L  E   K++ 
Sbjct: 5   VPKVPFRSPGEGDTSWVDIYNRLYRERLFFLGQEVDTEISNQLISLMIYLSIEKDTKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V +GMAIYDTMQF++P + T CMG AAS+ S +L  G    R A P+AR++
Sbjct: 65  LFINSPGGWVISGMAIYDTMQFVRPDVQTICMGLAASIASFILVGGAITKRIAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  +  +YV+  GK    V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPIWVVSEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGIVDLV 193


>gi|34500938|ref|NP_904123.1| ATP-dependent Clp protease proteolytic subunit [Amborella
           trichopoda]
 gi|68052165|sp|Q70XY2|CLPP_AMBTC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|34481653|emb|CAD45131.1| ATP-dependent protease proteolytic subunit [Amborella trichopoda]
          Length = 202

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 72/189 (38%), Positives = 116/189 (61%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     DIY+RL +ER++F+  ++E  ++  I   +++L  E+  +++ 
Sbjct: 5   VPKVPFRSPGEEDATWVDIYNRLHRERLLFLGQEVEGEISNQIVGLMVYLSIEDDTRDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYD MQF+ P + T CMG AASMGS +L+ GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGIAIYDAMQFVPPDVHTICMGLAASMGSFVLAGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +   A +    A +++K++  +  +YV+  G     V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAPAGEFILEAGELLKLRETITSVYVQRTGNPLWVVSEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
              G+VD +
Sbjct: 185 QAHGIVDLI 193


>gi|284029222|ref|YP_003379153.1| endopeptidase Clp [Kribbella flavida DSM 17836]
 gi|283808515|gb|ADB30354.1| Endopeptidase Clp [Kribbella flavida DSM 17836]
          Length = 211

 Score =  212 bits (539), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 84/193 (43%), Positives = 132/193 (68%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+ Q+ RGER  D+YS LL ERI+++   I+  +A  + AQLL LEA+ P ++I+LY
Sbjct: 6   IPNVITQSPRGERIMDVYSHLLSERIIYLGTGIDAGVANALIAQLLHLEADKPDQDINLY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           IN  GG +TA +AIYDT+Q+I+ P+ST C+GQA + G++LL+AGE G R  LP+ARI+LH
Sbjct: 66  INCEGGDMTAMLAIYDTIQYIRSPVSTLCVGQAIAAGAVLLAAGEPGRRAVLPHARIVLH 125

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP+    G   D+   A ++V+++ ++  I   + G+T E++    DRDH+++A  A  +
Sbjct: 126 QPAARGQGTIPDLILQADEVVRVRAQVESILSAHTGQTIEQLRHDTDRDHVLTAEGARAY 185

Query: 199 GVVDKVLMSRIDI 211
           G+VD+V+  R  +
Sbjct: 186 GIVDEVIQHRAQV 198


>gi|310790485|gb|EFQ26018.1| ATP-dependent Clp protease proteolytic subunit [Glomerella
           graminicola M1.001]
          Length = 248

 Score =  212 bits (539), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 84/182 (46%), Positives = 129/182 (70%), Gaps = 7/182 (3%)

Query: 42  ERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP 101
           ERIV + G I+D ++  I AQLL+LE+++P K I++YINSPGG V++G+AIYDTM +IK 
Sbjct: 57  ERIVCLNGAIDDTVSASIVAQLLWLESDSPDKAITMYINSPGGSVSSGLAIYDTMTYIKS 116

Query: 102 PISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKI 161
           P+ST C+G A+SM +LLL+ GE G R+ALP++ +++HQP GG  GQASDI  +A  I +I
Sbjct: 117 PVSTVCLGAASSMAALLLTGGEAGKRYALPHSSVMIHQPLGGTQGQASDILIYANQIQRI 176

Query: 162 KRRLNEIYVKNCGK-------TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           ++++NEI  ++  K       + EE+   ++RD  ++A EA + GV+D++L  R + + K
Sbjct: 177 RKQINEIMKRHINKSFGQEKYSLEEIHDMMERDKYLTAEEAKEIGVIDEILTRREEKDLK 236

Query: 215 SK 216
            K
Sbjct: 237 EK 238


>gi|156597979|gb|ABU85256.1| clp protease proteolytic subunit [Cycas micronesica]
          Length = 202

 Score =  212 bits (539), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 77/195 (39%), Positives = 121/195 (62%), Gaps = 3/195 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+RL +ER++F   Q++D +A  +   +++L  E+  K+I 
Sbjct: 5   VPKVPFRIPGEEDAVWVDVYNRLYRERLLFPGQQVDDEIANQLIGIMMYLNGEDENKDIY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            YINSPGG V  G++IYD MQF+ P + T CMG AASMGS +L+ GE   R ALP+AR++
Sbjct: 65  PYINSPGGAVIPGISIYDAMQFVVPDVHTICMGLAASMGSSVLTGGEITKRIALPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  + GQA +    A++++K++  +  +YV+  GK    +   ++RD  MSA+EA
Sbjct: 125 IHQPASSYYDGQAGECIMEAEEVLKLRDSITNVYVQRTGKPLWVISGDMERDVFMSATEA 184

Query: 196 CDWGVVDKVLMSRID 210
             +G+VD V +   +
Sbjct: 185 QAYGIVDLVAVENTE 199


>gi|114804289|ref|YP_762286.1| clp protease proteolytic subunit [Morus indica]
 gi|122166780|sp|Q09WZ2|CLPP_MORIN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|78100341|gb|ABB20982.1| clp protease proteolytic subunit [Morus indica]
          Length = 196

 Score =  212 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 71/189 (37%), Positives = 118/189 (62%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     D+ +RL +ER++F+  +++  ++  +   ++FL  E+  K++ 
Sbjct: 5   VPKVPFRSPGDEDASWVDVINRLYRERLLFLGQEVDSEISNQLIGLMVFLSIEDDTKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+ IYDTMQF++P + T CMG AASMGS +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGLGIYDTMQFVQPDVQTICMGLAASMGSFILVGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  +  +YV+  GK+   + + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKSLWVISEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGLVDLV 193


>gi|87125531|ref|ZP_01081376.1| ATP-dependent Clp protease proteolytic subunit 4 [Synechococcus sp.
           RS9917]
 gi|86166831|gb|EAQ68093.1| ATP-dependent Clp protease proteolytic subunit 4 [Synechococcus sp.
           RS9917]
          Length = 211

 Score =  212 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 79/198 (39%), Positives = 120/198 (60%), Gaps = 19/198 (9%)

Query: 34  DIYSRLLKERIVFVT----------GQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           D+ S +LKERIV++            Q+   +  LI AQLL+LE +NP K I  YINS G
Sbjct: 7   DLPSLMLKERIVYLGLPLFSDDDTKRQLGLDVTELIIAQLLYLEFDNPDKPIYFYINSTG 66

Query: 84  GV---------VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
                       T   AI DT++++KPP+ T C+GQA    +++LSAG KG R ALP+A 
Sbjct: 67  TSWYTGDAIGFETEAFAICDTLRYVKPPVHTICIGQAMGTAAVILSAGTKGQRAALPHAS 126

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I+LHQP  G  GQA+DI+  A++++  KR + EI  +N G++ E++ K  DR   ++  +
Sbjct: 127 IVLHQPRSGARGQATDIQIRAKEVLHNKRAMLEILSENTGRSVEQLAKDSDRMSYLTPEQ 186

Query: 195 ACDWGVVDKVLMSRIDIE 212
           A ++G++D+VL SR ++ 
Sbjct: 187 AVEYGLIDRVLGSRKELP 204


>gi|225155839|ref|ZP_03724325.1| Endopeptidase Clp [Opitutaceae bacterium TAV2]
 gi|224803389|gb|EEG21626.1| Endopeptidase Clp [Opitutaceae bacterium TAV2]
          Length = 218

 Score =  212 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 82/175 (46%), Positives = 113/175 (64%), Gaps = 2/175 (1%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I  + L++R +F+ G + D  A  I  +LL+LEA  P K+I+ YINSPGG +TAGMAIYD
Sbjct: 43  IQKKFLEQRKIFLWGAVTDESAKDITERLLYLEAIAPGKDITFYINSPGGSITAGMAIYD 102

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP--SGGFSGQASDIE 152
           TMQ I  PI+    G AASMGS+LLS   KG RF  P++R+L+HQP  SG F G A+DI 
Sbjct: 103 TMQLISSPITVVVTGMAASMGSILLSGAPKGRRFLYPHSRVLIHQPLISGRFIGPATDIN 162

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
             AQ++ K++  LN+I     G+  E + K  DRD  ++A EA  +G+ DK++  
Sbjct: 163 IQAQEMEKLRAELNQILANASGQPIERINKDTDRDFYLNAQEAIAYGLADKIIEK 217


>gi|314923824|gb|EFS87655.1| Clp protease [Propionibacterium acnes HL001PA1]
 gi|314966161|gb|EFT10260.1| Clp protease [Propionibacterium acnes HL082PA2]
 gi|314982026|gb|EFT26119.1| Clp protease [Propionibacterium acnes HL110PA3]
 gi|315090840|gb|EFT62816.1| Clp protease [Propionibacterium acnes HL110PA4]
 gi|315095052|gb|EFT67028.1| Clp protease [Propionibacterium acnes HL060PA1]
 gi|315104285|gb|EFT76261.1| Clp protease [Propionibacterium acnes HL050PA2]
          Length = 244

 Score =  212 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 77/191 (40%), Positives = 126/191 (65%), Gaps = 2/191 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P   E+T+ G R  D Y++L ++RI+F+   + D +A  + AQLL L++ +  ++IS+Y
Sbjct: 53  IPQWEERTSYGVRRVDPYTKLFEDRIIFLGTPVTDDIANAVMAQLLCLQSMDADRQISMY 112

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TA  AIYDTM +++P I T C+G AAS  ++LL+AG KG R +LPN+ +L+H
Sbjct: 113 INSPGGSFTAMTAIYDTMNYVRPDIQTICLGMAASAAAVLLAAGAKGQRLSLPNSTVLIH 172

Query: 139 QPSG--GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           QP+      GQA+DIE    +I +I++ +  +     G++ E++ K +DRD  ++A  A 
Sbjct: 173 QPAMGQATYGQATDIEILDDEIQRIRKLMENMLATATGQSVEQISKDIDRDKYLTAQGAK 232

Query: 197 DWGVVDKVLMS 207
           ++G++D +L S
Sbjct: 233 EYGLIDDILTS 243


>gi|229821078|ref|YP_002882604.1| Endopeptidase Clp [Beutenbergia cavernae DSM 12333]
 gi|229566991|gb|ACQ80842.1| Endopeptidase Clp [Beutenbergia cavernae DSM 12333]
          Length = 223

 Score =  212 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 89/195 (45%), Positives = 132/195 (67%), Gaps = 2/195 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y++L ++RI+F+  QI+D  A  + AQLL LE+++P   I++
Sbjct: 23  VLPQFEERTAYGFKRQDPYTKLFEDRIIFLGVQIDDASADDVMAQLLVLESQDPDGLITM 82

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  TA  AIYDTMQ+I P I T C+GQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 83  YINSPGGSFTALTAIYDTMQYIAPQIQTVCLGQAASAAAVLLAAGTPGKRLALPNARVLI 142

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQP+  GG   QASDIE  A ++++++  L      +  K+ +EV   ++RD I++A+ A
Sbjct: 143 HQPALEGGTYAQASDIEIQANEVLRMREWLESTIAAHTSKSVDEVRADIERDKILTAAGA 202

Query: 196 CDWGVVDKVLMSRID 210
            ++G+VD+VL SR  
Sbjct: 203 LEYGIVDQVLESRKK 217


>gi|50843046|ref|YP_056273.1| ATP-dependent Clp protease proteolytic subunit 2 [Propionibacterium
           acnes KPA171202]
 gi|50840648|gb|AAT83315.1| ATP-dependent Clp protease proteolytic subunit 2 [Propionibacterium
           acnes KPA171202]
          Length = 253

 Score =  212 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 77/191 (40%), Positives = 126/191 (65%), Gaps = 2/191 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P   E+T+ G R  D Y++L ++RI+F+   + D +A  + AQLL L++ +  ++IS+Y
Sbjct: 62  IPQWEERTSYGVRRVDPYTKLFEDRIIFLGTPVTDDIANAVMAQLLCLQSMDADRQISMY 121

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TA  AIYDTM +++P I T C+G AAS  ++LL+AG KG R +LPN+ +L+H
Sbjct: 122 INSPGGSFTAMTAIYDTMNYVRPDIQTICLGMAASAAAVLLAAGAKGQRLSLPNSTVLIH 181

Query: 139 QPSG--GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           QP+      GQA+DIE    +I +I++ +  +     G++ E++ K +DRD  ++A  A 
Sbjct: 182 QPAMGQATYGQATDIEILDDEIQRIRKLMENMLATATGQSVEQISKDIDRDKYLTAQGAK 241

Query: 197 DWGVVDKVLMS 207
           ++G++D +L S
Sbjct: 242 EYGLIDDILTS 252


>gi|290489474|gb|ADD31121.1| clp protease proteolytic subunit protein [Quercus nigra]
          Length = 196

 Score =  212 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 73/189 (38%), Positives = 117/189 (61%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     DIY+RL + R++F+  +++  ++  I   +++L  E+  K++ 
Sbjct: 5   VPKVPFRSPGEEDASWVDIYNRLYRARLLFLGQEVDSDLSNQIIGLMVYLSLEDDSKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYDTMQF++P + T CMG AAS+GS LL  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGVAIYDTMQFVQPDVQTICMGLAASIGSFLLVGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +   A +    A++++K++  +  +YV+  G     V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAPAGEFILEAEEMMKLRETITRVYVQRTGTPLWVVSEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGIVDHV 193


>gi|255537123|ref|XP_002509628.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis]
 gi|223549527|gb|EEF51015.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis]
          Length = 279

 Score =  212 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 72/209 (34%), Positives = 117/209 (55%), Gaps = 8/209 (3%)

Query: 5   GCAKKDSEDVFLGL------VPMVVEQTNR--GERSYDIYSRLLKERIVFVTGQIEDHMA 56
            C  +    +  G+       P V  +T      +  D+++ L +ER++F+   I++  +
Sbjct: 52  QCGTRSHSAIHAGVRMMPIGTPRVPYRTPGEGTWQWVDLWNALYRERVIFIGQNIDEEFS 111

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I A +L+L+  +  K I  YIN PGG +T  +AIYDTMQ +K P+ T C+G A ++  
Sbjct: 112 NQILATMLYLDTIDDNKRIYFYINGPGGDLTPTLAIYDTMQSLKSPVGTHCVGFAYNLAG 171

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +L+AGEKG R A+P +RI L  P+G   GQA DI   A ++++IK  L     K  G+ 
Sbjct: 172 FILAAGEKGNRSAMPLSRIALQSPAGAARGQADDIRNEANELLRIKDYLYNELAKKTGQP 231

Query: 177 YEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            E++ K L R    +A EA D+G++D+++
Sbjct: 232 AEKINKDLSRMKRFNAQEALDYGLIDRII 260


>gi|327328169|gb|EGE69938.1| Clp protease [Propionibacterium acnes HL103PA1]
          Length = 244

 Score =  212 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 78/191 (40%), Positives = 126/191 (65%), Gaps = 2/191 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P   E+T+ G R  D Y++L ++RI+F+   + D +A  + AQLL L++ +  ++IS+Y
Sbjct: 53  IPQWEERTSYGVRRVDPYTKLFEDRIIFLGTPVTDDIANAVMAQLLCLQSMDADRQISMY 112

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TA  AIYDTM +++P I T C+G AAS  ++LL+AG KG R +LPN+ +L+H
Sbjct: 113 INSPGGSFTAMTAIYDTMNYVRPDIQTICLGMAASAAAVLLAAGAKGQRLSLPNSTVLIH 172

Query: 139 QPSG--GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           QP+      GQA+DIE    +I +I++ +  +     G+T E++ K +DRD  ++A  A 
Sbjct: 173 QPAMGQATYGQATDIEILDDEIQRIRKLMENMLATATGQTVEQISKDIDRDKYLTAQGAK 232

Query: 197 DWGVVDKVLMS 207
           ++G++D +L S
Sbjct: 233 EYGLIDDILTS 243


>gi|116073335|ref|ZP_01470597.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           RS9916]
 gi|116068640|gb|EAU74392.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           RS9916]
          Length = 221

 Score =  212 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 82/215 (38%), Positives = 125/215 (58%), Gaps = 19/215 (8%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVT----------GQIEDHMATLICAQLLFLEAE 69
           P   + T       D+ S +LKERIV++            Q+   +  LI AQLL+LE +
Sbjct: 6   PYYGDSTVLRTPPPDLPSLMLKERIVYLGLPLFSDDDTKRQLGLDVTELIIAQLLYLEFD 65

Query: 70  NPQKEISLYINSPGGV---------VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           NP+K I  YINS G            T   AI DT+ +IKPP+ T C+GQA    +++LS
Sbjct: 66  NPEKPIYFYINSTGTSWHTGDAIGFETEAFAICDTISYIKPPVHTICIGQAMGTAAVILS 125

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG R ALP++ I+LHQP  G  GQA+DI+  A+++++ KR + EI   N G+T E++
Sbjct: 126 AGTKGQRAALPHSSIVLHQPRSGARGQATDIQIRAKEVLQNKRSMLEILSANTGRTVEQL 185

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
            +  DR   ++  +A ++G++D+VL SR D+  ++
Sbjct: 186 SQDSDRMSYLNPQQAVEYGLIDRVLSSRKDLPSQA 220


>gi|28493448|ref|NP_787609.1| ATP-dependent Clp protease proteolytic subunit [Tropheryma whipplei
           str. Twist]
 gi|28572439|ref|NP_789219.1| ATP-dependent Clp protease proteolytic subunit 1 [Tropheryma
           whipplei TW08/27]
 gi|67460537|sp|Q83G48|CLPP2_TROWT RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|67460540|sp|Q83I19|CLPP1_TROW8 RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|28410570|emb|CAD66957.1| ATP-dependent Clp protease proteolytic subunit 1 [Tropheryma
           whipplei TW08/27]
 gi|28476489|gb|AAO44578.1| ATP-dependent Clp protease proteolytic subunit [Tropheryma whipplei
           str. Twist]
          Length = 180

 Score =  212 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 87/175 (49%), Positives = 124/175 (70%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           E    ++ RLL+ERIV++   I+D +A  ICA++L L A++P+++I LYINSPGG +TAG
Sbjct: 3   ETKQTVFDRLLQERIVWLGEAIDDKLANEICAKILLLNADDPKEDIFLYINSPGGSITAG 62

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
           MAIYDTMQF+   I T  +G AASMG +LL++G +  R+ +PNAR+LLHQP  GF G AS
Sbjct: 63  MAIYDTMQFVSNDIVTVGIGMAASMGQVLLTSGTQNKRYIMPNARVLLHQPLAGFGGTAS 122

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           DI+  A+ I+ +K RL++I     GKT E++ +  DRDH  +A EA ++G VD +
Sbjct: 123 DIQTQAKLILDMKYRLSQITASRTGKTVEQIMEDGDRDHWFTAEEALEYGFVDHI 177


>gi|313763509|gb|EFS34873.1| Clp protease [Propionibacterium acnes HL013PA1]
 gi|313773446|gb|EFS39412.1| Clp protease [Propionibacterium acnes HL074PA1]
 gi|313793898|gb|EFS41922.1| Clp protease [Propionibacterium acnes HL110PA1]
 gi|313801289|gb|EFS42540.1| Clp protease [Propionibacterium acnes HL110PA2]
 gi|313808032|gb|EFS46513.1| Clp protease [Propionibacterium acnes HL087PA2]
 gi|313811499|gb|EFS49213.1| Clp protease [Propionibacterium acnes HL083PA1]
 gi|313813441|gb|EFS51155.1| Clp protease [Propionibacterium acnes HL025PA1]
 gi|313819598|gb|EFS57312.1| Clp protease [Propionibacterium acnes HL046PA2]
 gi|313822077|gb|EFS59791.1| Clp protease [Propionibacterium acnes HL036PA1]
 gi|313823689|gb|EFS61403.1| Clp protease [Propionibacterium acnes HL036PA2]
 gi|313826013|gb|EFS63727.1| Clp protease [Propionibacterium acnes HL063PA1]
 gi|313829482|gb|EFS67196.1| Clp protease [Propionibacterium acnes HL063PA2]
 gi|313831240|gb|EFS68954.1| Clp protease [Propionibacterium acnes HL007PA1]
 gi|313834852|gb|EFS72566.1| Clp protease [Propionibacterium acnes HL056PA1]
 gi|313839988|gb|EFS77702.1| Clp protease [Propionibacterium acnes HL086PA1]
 gi|314914808|gb|EFS78639.1| Clp protease [Propionibacterium acnes HL005PA4]
 gi|314919376|gb|EFS83207.1| Clp protease [Propionibacterium acnes HL050PA1]
 gi|314920716|gb|EFS84547.1| Clp protease [Propionibacterium acnes HL050PA3]
 gi|314924727|gb|EFS88558.1| Clp protease [Propionibacterium acnes HL036PA3]
 gi|314930596|gb|EFS94427.1| Clp protease [Propionibacterium acnes HL067PA1]
 gi|314954449|gb|EFS98855.1| Clp protease [Propionibacterium acnes HL027PA1]
 gi|314957524|gb|EFT01627.1| Clp protease [Propionibacterium acnes HL002PA1]
 gi|314961994|gb|EFT06095.1| Clp protease [Propionibacterium acnes HL002PA2]
 gi|314963747|gb|EFT07847.1| Clp protease [Propionibacterium acnes HL082PA1]
 gi|314968426|gb|EFT12524.1| Clp protease [Propionibacterium acnes HL037PA1]
 gi|314974116|gb|EFT18212.1| Clp protease [Propionibacterium acnes HL053PA1]
 gi|314976594|gb|EFT20689.1| Clp protease [Propionibacterium acnes HL045PA1]
 gi|314978951|gb|EFT23045.1| Clp protease [Propionibacterium acnes HL072PA2]
 gi|314984413|gb|EFT28505.1| Clp protease [Propionibacterium acnes HL005PA1]
 gi|314986606|gb|EFT30698.1| Clp protease [Propionibacterium acnes HL005PA2]
 gi|314990963|gb|EFT35054.1| Clp protease [Propionibacterium acnes HL005PA3]
 gi|315079595|gb|EFT51588.1| Clp protease [Propionibacterium acnes HL053PA2]
 gi|315081176|gb|EFT53152.1| Clp protease [Propionibacterium acnes HL078PA1]
 gi|315083638|gb|EFT55614.1| Clp protease [Propionibacterium acnes HL027PA2]
 gi|315087058|gb|EFT59034.1| Clp protease [Propionibacterium acnes HL002PA3]
 gi|315089233|gb|EFT61209.1| Clp protease [Propionibacterium acnes HL072PA1]
 gi|315095255|gb|EFT67231.1| Clp protease [Propionibacterium acnes HL038PA1]
 gi|315099137|gb|EFT71113.1| Clp protease [Propionibacterium acnes HL059PA2]
 gi|315100380|gb|EFT72356.1| Clp protease [Propionibacterium acnes HL046PA1]
 gi|315106805|gb|EFT78781.1| Clp protease [Propionibacterium acnes HL030PA1]
 gi|315108934|gb|EFT80910.1| Clp protease [Propionibacterium acnes HL030PA2]
 gi|327328482|gb|EGE70244.1| Clp protease [Propionibacterium acnes HL096PA2]
 gi|327329652|gb|EGE71408.1| Clp protease [Propionibacterium acnes HL096PA3]
 gi|327334167|gb|EGE75881.1| Clp protease [Propionibacterium acnes HL097PA1]
 gi|327444269|gb|EGE90923.1| Clp protease [Propionibacterium acnes HL043PA2]
 gi|327444851|gb|EGE91505.1| Clp protease [Propionibacterium acnes HL043PA1]
 gi|327446337|gb|EGE92991.1| Clp protease [Propionibacterium acnes HL013PA2]
 gi|327452075|gb|EGE98729.1| Clp protease [Propionibacterium acnes HL092PA1]
 gi|327454888|gb|EGF01543.1| Clp protease [Propionibacterium acnes HL087PA3]
 gi|327457827|gb|EGF04482.1| Clp protease [Propionibacterium acnes HL083PA2]
 gi|328752326|gb|EGF65942.1| Clp protease [Propionibacterium acnes HL020PA1]
 gi|328755279|gb|EGF68895.1| Clp protease [Propionibacterium acnes HL087PA1]
 gi|328758240|gb|EGF71856.1| Clp protease [Propionibacterium acnes HL025PA2]
 gi|328760011|gb|EGF73594.1| Clp protease [Propionibacterium acnes HL099PA1]
          Length = 244

 Score =  211 bits (538), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 77/191 (40%), Positives = 126/191 (65%), Gaps = 2/191 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P   E+T+ G R  D Y++L ++RI+F+   + D +A  + AQLL L++ +  ++IS+Y
Sbjct: 53  IPQWEERTSYGVRRVDPYTKLFEDRIIFLGTPVTDDIANAVMAQLLCLQSMDADRQISMY 112

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TA  AIYDTM +++P I T C+G AAS  ++LL+AG KG R +LPN+ +L+H
Sbjct: 113 INSPGGSFTAMTAIYDTMNYVRPDIQTICLGMAASAAAVLLAAGAKGQRLSLPNSTVLIH 172

Query: 139 QPSG--GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           QP+      GQA+DIE    +I +I++ +  +     G++ E++ K +DRD  ++A  A 
Sbjct: 173 QPAMGQATYGQATDIEILDDEIQRIRKLMENMLATATGQSVEQISKDIDRDKYLTAQGAK 232

Query: 197 DWGVVDKVLMS 207
           ++G++D +L S
Sbjct: 233 EYGLIDDILTS 243


>gi|255961322|ref|YP_003097504.1| ATP-dependent Clp protease proteolytic subunit [Selaginella
           moellendorffii]
 gi|254941494|gb|ACT89009.1| ATP-dependent Clp protease proteolytic subunit [Selaginella
           moellendorffii]
          Length = 206

 Score =  211 bits (538), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 77/190 (40%), Positives = 120/190 (63%), Gaps = 3/190 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  + +  E     D ++RL +ER++F+   ++D +A  I   +++L  EN  K+I 
Sbjct: 5   VPKVSFRISGEEDMVRIDTHNRLYRERLLFLGQNMDDEIANQIICIMMYLNGENRSKDIY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG V AG+++YD MQF+ P + T C+G AASMGS +L+ G    R ALP+AR++
Sbjct: 65  LYINSPGGAVLAGISVYDMMQFVVPDVHTICVGLAASMGSFILTGGGITKRIALPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  + GQA +    A++I+K++  +  IY +  GK    V + ++RD  MSA EA
Sbjct: 125 IHQPASSFYEGQAGECLMEAEEILKLRDCITSIYARKTGKPLWVVSEDMERDVFMSAREA 184

Query: 196 CDWGVVDKVL 205
             +G++D V+
Sbjct: 185 RVYGIIDLVV 194


>gi|229822178|ref|YP_002883704.1| Endopeptidase Clp [Beutenbergia cavernae DSM 12333]
 gi|229568091|gb|ACQ81942.1| Endopeptidase Clp [Beutenbergia cavernae DSM 12333]
          Length = 197

 Score =  211 bits (538), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 80/192 (41%), Positives = 129/192 (67%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VVE+    ER+ D++SRLL +RIV++   I++ +A ++ AQL+ LE++NP   I LY
Sbjct: 6   IPYVVEKRPGSERAMDVFSRLLSDRIVYLGTAIDEGVANVLIAQLIHLESDNPDLPIHLY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG + A +++YD MQ+++PP++T C+GQAA+  +LLL+ G KG R  L + R++LH
Sbjct: 66  INSPGGDIPATLSVYDAMQYVRPPVATTCLGQAATTAALLLAGGAKGQRSILSHGRVVLH 125

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP+G   G   D+   A +IV+++ +L E+   + G++ E + +  DR+ I+ A  A  +
Sbjct: 126 QPTGQGRGTVPDLILAADEIVRVRSQLEEVLSAHTGQSVETLRRDTDRELILDAERAKAY 185

Query: 199 GVVDKVLMSRID 210
           GVVD +L  R D
Sbjct: 186 GVVDHILTERPD 197


>gi|166235685|gb|ABY85594.1| ATP-dependent protease proteolytic subunit [Silene integripetala]
          Length = 196

 Score =  211 bits (538), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 73/189 (38%), Positives = 119/189 (62%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     D+Y+RL +ER++F+  +++  ++  +   +++L  E+  K++ 
Sbjct: 5   VPKVPFRSPGEEDASWVDVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AI DTMQF++P + T CMG AASMGS +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGVAIXDTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  L  +YV+  GK+   V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQTGEFILEAEELLKLRETLTRVYVQRTGKSTWVVSEDMERDVFMSAAEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGIVDLV 193


>gi|32480867|ref|NP_862778.1| ATP-dependent Clp protease proteolytic subunit [Calycanthus
           floridus var. glaucus]
 gi|68052187|sp|Q7YJV2|CLPP_CALFG RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|32399403|emb|CAD28745.1| ATP-dependent protease proteolytic subunit [Calycanthus floridus
           var. glaucus]
          Length = 202

 Score =  211 bits (538), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 72/189 (38%), Positives = 116/189 (61%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     D+Y+RL +ER++F+  +++  ++  +   +++L  E+  K++ 
Sbjct: 5   VPKVPFRSPGEEDAVWVDVYNRLHRERLLFLGQEVDSEISNQLVGLMVYLTIEDDTKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYDTMQF+ P + T CMG AASMGS +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGIAIYDTMQFVSPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +     +    A++++K++  L  +YV+  G     V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAPTGEFILEAEELLKLRETLTRVYVQRTGNPLWVVSEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGIVDLV 193


>gi|139389289|ref|YP_001123055.1| ATP-dependent protease subunit [Aethionema grandiflorum]
 gi|139390373|ref|YP_001122971.1| ATP-dependent protease subunit [Aethionema cordifolium]
 gi|160380540|sp|A4QJE0|CLPP_AETCO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|160380541|sp|A4QJM4|CLPP_AETGR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|134286166|dbj|BAF49795.1| ATP-dependent protease subunit [Aethionema cordifolium]
 gi|134286251|dbj|BAF49879.1| ATP-dependent protease subunit [Aethionema grandiflorum]
          Length = 196

 Score =  211 bits (538), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 71/189 (37%), Positives = 116/189 (61%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNR--GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++         DIY+RL +ER+ F+  +++  ++  + + +++L  E   K++ 
Sbjct: 5   VPKVPFRSPGEGDTSWVDIYNRLYRERLFFLGQEVDTDISNQLISLMIYLSIEKDTKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V +GMAIYDTMQF++P + T CMG AAS+ S +L  G    R A P+AR++
Sbjct: 65  LFINSPGGWVISGMAIYDTMQFVRPDVQTICMGLAASIASFILVGGAITKRIAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  +  +YV+  GK    V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPIWVVSEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGIVDLV 193


>gi|149390564|ref|YP_001294209.1| clp protease proteolytic subunit [Buxus microphylla]
 gi|160380545|sp|A6MM61|CLPP_BUXMI RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|146762309|gb|ABQ45273.1| clp protease proteolytic subunit [Buxus microphylla]
          Length = 202

 Score =  211 bits (538), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 74/189 (39%), Positives = 115/189 (60%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+RL +ER++F+  +++  ++  +   +++L  E+  K++ 
Sbjct: 5   VPKVPFRNPGEEDAVWVDVYNRLHRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYDTMQF+ P I T CMG AASMGS LL  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGIAIYDTMQFVPPDIHTICMGLAASMGSFLLVGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  +  +YV+  G     V + ++RD  MSA EA
Sbjct: 125 IHQPASSFYEAQTGEFILEAEELLKLRETVTRVYVQRTGNPLWVVSEDMERDVFMSAIEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGIVDLV 193


>gi|139388935|ref|YP_001123662.1| ATP-dependent Clp protease proteolytic subunit [Lepidium
           virginicum]
 gi|160380556|sp|A4QLD1|CLPP_LEPVR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|134286865|dbj|BAF50486.1| ATP-dependent protease subunit [Lepidium virginicum]
          Length = 196

 Score =  211 bits (538), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 71/189 (37%), Positives = 115/189 (60%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNR--GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++         DIY+RL +ER+ F+   ++  ++  + + +++L  E   K++ 
Sbjct: 5   VPKVPFRSPGEGDTSWVDIYNRLYRERLFFLGQDVDTEISNQLISLMIYLSIEKDTKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V +GMAIYDTMQF++P + T CMG AAS+ S +L  G    R A P+AR++
Sbjct: 65  LFINSPGGWVISGMAIYDTMQFVRPDVQTICMGLAASIASFILVGGAITKRIAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  +  +YV+  GK    V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPIWVVSEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGIVDLV 193


>gi|282854723|ref|ZP_06264058.1| Clp protease [Propionibacterium acnes J139]
 gi|289426420|ref|ZP_06428163.1| Clp protease [Propionibacterium acnes SK187]
 gi|289428779|ref|ZP_06430462.1| Clp protease [Propionibacterium acnes J165]
 gi|295131121|ref|YP_003581784.1| Clp protease [Propionibacterium acnes SK137]
 gi|282582305|gb|EFB87687.1| Clp protease [Propionibacterium acnes J139]
 gi|289153148|gb|EFD01866.1| Clp protease [Propionibacterium acnes SK187]
 gi|289158177|gb|EFD06397.1| Clp protease [Propionibacterium acnes J165]
 gi|291375909|gb|ADD99763.1| Clp protease [Propionibacterium acnes SK137]
          Length = 229

 Score =  211 bits (538), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 77/191 (40%), Positives = 126/191 (65%), Gaps = 2/191 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P   E+T+ G R  D Y++L ++RI+F+   + D +A  + AQLL L++ +  ++IS+Y
Sbjct: 38  IPQWEERTSYGVRRVDPYTKLFEDRIIFLGTPVTDDIANAVMAQLLCLQSMDADRQISMY 97

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TA  AIYDTM +++P I T C+G AAS  ++LL+AG KG R +LPN+ +L+H
Sbjct: 98  INSPGGSFTAMTAIYDTMNYVRPDIQTICLGMAASAAAVLLAAGAKGQRLSLPNSTVLIH 157

Query: 139 QPSG--GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           QP+      GQA+DIE    +I +I++ +  +     G++ E++ K +DRD  ++A  A 
Sbjct: 158 QPAMGQATYGQATDIEILDDEIQRIRKLMENMLATATGQSVEQISKDIDRDKYLTAQGAK 217

Query: 197 DWGVVDKVLMS 207
           ++G++D +L S
Sbjct: 218 EYGLIDDILTS 228


>gi|225428533|ref|XP_002284510.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297741435|emb|CBI32566.3| unnamed protein product [Vitis vinifera]
          Length = 269

 Score =  211 bits (538), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 74/191 (38%), Positives = 119/191 (62%), Gaps = 4/191 (2%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            + P V+  T  G    D+ + L + RI+F+   I   +A  + +QL+ L A +   +I 
Sbjct: 81  PVAPSVM--TPGGP--LDLSTVLFRSRIIFIGQPINSMVAQRVISQLVTLAAIDEDADIL 136

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+N PGG   + +AIYD M +IKP + T C G AAS G+LLL+ GEKGMR+A+PNARI+
Sbjct: 137 MYLNCPGGSTYSVLAIYDCMAWIKPKVGTVCFGVAASQGALLLAGGEKGMRYAMPNARIM 196

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  G   D+ R   + V+ + +++++Y    G+  E+V++  +RD  +SASEA 
Sbjct: 197 VHQPQGGCGGHVEDVRRQVNEAVQSRHKIDKMYAAFTGQPLEQVQQYTERDRFLSASEAM 256

Query: 197 DWGVVDKVLMS 207
           ++G +D +L +
Sbjct: 257 EFGFIDGILET 267


>gi|290489460|gb|ADD31114.1| clp protease proteolytic subunit protein [Euonymus americanus]
          Length = 197

 Score =  211 bits (537), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 75/193 (38%), Positives = 120/193 (62%), Gaps = 3/193 (1%)

Query: 19  VPMVVEQTN--RGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP +  +          DIY+RL +ER++F+   I  H+A  + A +L+L  E+  K++ 
Sbjct: 5   VPRIPFRNPGENASSWVDIYNRLYRERLLFLGQIINTHLANQLIALILYLTMESDTKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+A+YDTMQF++P + T C+G AASMGS +L  G+   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGIALYDTMQFVRPDVQTICLGLAASMGSFILVGGKITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  F  Q  +    A++++K++  +  +YV+  GK    V + ++RD  MSA+EA
Sbjct: 125 IHQPFSAFFMAQVGEFVLEAEELLKLRETITRVYVQRTGKPLWMVSEDMERDAFMSATEA 184

Query: 196 CDWGVVDKVLMSR 208
              G+VD+V + +
Sbjct: 185 QAHGIVDRVAVEK 197


>gi|114107071|ref|YP_740227.1| clp protease proteolytic subunit [Liriodendron tulipifera]
 gi|122227470|sp|Q0G9J4|CLPP_LIRTU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|113201019|gb|ABI32534.1| clp protease proteolytic subunit [Liriodendron tulipifera]
          Length = 202

 Score =  211 bits (537), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 69/189 (36%), Positives = 116/189 (61%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     D+++RL +ER++F+  +++  ++  +   +++L  E+  +++ 
Sbjct: 5   VPKVPFRSPGEEDAIWVDVFNRLYRERLLFLGQEVDSEISNQLVGLMVYLSIEDDTRDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G++IYDTMQF+ P + T CMG AASMGS +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGISIYDTMQFVPPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +     +    A++++K++  L  +YV+  G     V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAPTGEFILEAEELLKLRETLTRVYVQRTGNPLWVVSEDMERDVFMSAAEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGIVDLV 193


>gi|330850654|ref|YP_004376535.1| clp protease proteolytic subunit [Ptilidium pulcherrimum]
 gi|302024783|gb|ADK89629.1| clp protease proteolytic subunit [Ptilidium pulcherrimum]
          Length = 212

 Score =  211 bits (537), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 76/197 (38%), Positives = 122/197 (61%), Gaps = 11/197 (5%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+RL +ER++F+  Q++D +A  +   +++L  E+  K++ 
Sbjct: 5   VPKVPFRLPGEEDAVWIDVYNRLYRERLLFLGQQVDDEIANQLIGIMMYLNGEDESKDMY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR-- 134
           LYINSPGG V AG+++YD MQF+ P + T CMG AASMGS +L+ GE   R ALP+A   
Sbjct: 65  LYINSPGGAVLAGISVYDAMQFVVPDVHTICMGLAASMGSFILTGGEITKRIALPHAFRI 124

Query: 135 ------ILLHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
                 +++HQP S  + GQA +    A++++K++  + ++YV+  GK    + + ++RD
Sbjct: 125 LLFVNRVMIHQPASSYYDGQAGECIMEAEEVLKLRDCITKVYVQRTGKPLWVISEDMERD 184

Query: 188 HIMSASEACDWGVVDKV 204
             MSA EA  +G+VD V
Sbjct: 185 VFMSAKEAKVYGIVDLV 201


>gi|226309396|ref|YP_002769356.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rhodococcus
           erythropolis PR4]
 gi|226188513|dbj|BAH36617.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rhodococcus
           erythropolis PR4]
          Length = 202

 Score =  211 bits (537), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 80/190 (42%), Positives = 122/190 (64%), Gaps = 1/190 (0%)

Query: 26  TNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV 85
           T+ G R   +  RL ++R + +TG++ D MA  +C++L+ L   +P+++I LYINSPGG 
Sbjct: 7   TDTGYRDL-LTDRLFRQRTILLTGEVNDAMAERVCSELVLLATTDPKRDIVLYINSPGGS 65

Query: 86  VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS 145
           V AG+AIYDTM+ I   + T  MG AASMG +LL +G  G R +L ++RI++HQPS G  
Sbjct: 66  VFAGLAIYDTMKLIPNDVVTVAMGFAASMGQVLLCSGTHGKRISLAHSRIMMHQPSAGIG 125

Query: 146 GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           G A DI   A+ +  +KR+  EI     G+T EE+E   DRD   +A +A ++G+VD+V+
Sbjct: 126 GTAVDIAIQAESLELMKRQSQEILAAETGRTVEEIETDSDRDRWFTAEQAREYGIVDRVV 185

Query: 206 MSRIDIEEKS 215
            S  +I  ++
Sbjct: 186 TSFAEIAPQA 195


>gi|124112049|ref|YP_001019072.1| proteolytic subunit 2 of clp protease [Chlorokybus atmophyticus]
 gi|160380575|sp|Q19VC3|CLPP_CHLAT RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|124012165|gb|ABD62181.2| proteolytic subunit 2 of clp protease [Chlorokybus atmophyticus]
          Length = 225

 Score =  211 bits (537), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 66/200 (33%), Positives = 117/200 (58%), Gaps = 2/200 (1%)

Query: 19  VPMVVEQTNRGERS--YDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           +P V  +      S   D+Y+RL +ERI+F+   ++D +A  +   ++FL +E+  K I 
Sbjct: 5   IPKVAYRIPGESVSTYVDVYNRLYRERILFLGEDLDDEVANQLIGVMVFLNSEDDTKGIF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            YINSPGG + +G+ +YD +Q I   ++T CMG AASM S +L+ G  G R   P+AR++
Sbjct: 65  FYINSPGGSMNSGLGVYDMIQHINVDVTTICMGLAASMASFILAGGTPGQRLMFPHARVM 124

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           LHQP GG  G+A  +   + ++ +++  +  +Y K  G+  E +   ++RD+ M    A 
Sbjct: 125 LHQPMGGNGGKAKYMVEESVEVKRLRELIAHLYAKRTGQPIERIRIDMNRDNFMRPRAAK 184

Query: 197 DWGVVDKVLMSRIDIEEKSK 216
           ++G++D ++    +++E  K
Sbjct: 185 EYGLIDHMITHITELDELEK 204


>gi|332190658|gb|AEE28779.1| ATP-dependent Clp protease proteolytic subunit 6 [Arabidopsis
           thaliana]
          Length = 289

 Score =  211 bits (537), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 69/191 (36%), Positives = 119/191 (62%), Gaps = 4/191 (2%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            ++P V+  T  G    D+ S L + RI+F+   I   +A  + +QL+ L + + + +I 
Sbjct: 101 PVMPSVM--TPGGP--LDLSSVLFRNRIIFIGQPINAQVAQRVISQLVTLASIDDKSDIL 156

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+N PGG   + +AIYD M +IKP + T   G AAS G+LLL+ GEKGMR+A+PN R++
Sbjct: 157 MYLNCPGGSTYSVLAIYDCMSWIKPKVGTVAFGVAASQGALLLAGGEKGMRYAMPNTRVM 216

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP  G  G   D+ R   + ++ +++++ +Y    G+  E+V++  +RD  +SASEA 
Sbjct: 217 IHQPQTGCGGHVEDVRRQVNEAIEARQKIDRMYAAFTGQPLEKVQQYTERDRFLSASEAL 276

Query: 197 DWGVVDKVLMS 207
           ++G++D +L +
Sbjct: 277 EFGLIDGLLET 287


>gi|18391311|ref|NP_563893.1| CLPP6; serine-type endopeptidase [Arabidopsis thaliana]
 gi|75313132|sp|Q9SAA2|CLPP6_ARATH RecName: Full=ATP-dependent Clp protease proteolytic subunit 6,
           chloroplastic; AltName: Full=Endopeptidase ClpP6;
           Short=nClpP6; AltName: Full=nClpP1; Flags: Precursor
 gi|4835782|gb|AAD30248.1|AC007296_9 Identical to gb|AF016621 ATP-dependent Clp protease proteolytic
           subunit from Arabidopsis thaliana and is a member of the
           PF|00574 CLP_protease family. ESTs gb|F13836 and
           gb|F13997 come from this gene
 gi|13194778|gb|AAK15551.1|AF348580_1 putative ATP-dependent Clp protease proteolytic subunit ClpP6
           [Arabidopsis thaliana]
 gi|21592854|gb|AAM64804.1| ATP-dependent Clp protease proteolytic subunit (ClpP6) [Arabidopsis
           thaliana]
 gi|110737993|dbj|BAF00932.1| putative ATP-dependent Clp protease proteolytic subunit
           [Arabidopsis thaliana]
 gi|332190657|gb|AEE28778.1| ATP-dependent Clp protease proteolytic subunit 6 [Arabidopsis
           thaliana]
          Length = 271

 Score =  211 bits (537), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 69/191 (36%), Positives = 119/191 (62%), Gaps = 4/191 (2%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            ++P V+  T  G    D+ S L + RI+F+   I   +A  + +QL+ L + + + +I 
Sbjct: 83  PVMPSVM--TPGGP--LDLSSVLFRNRIIFIGQPINAQVAQRVISQLVTLASIDDKSDIL 138

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+N PGG   + +AIYD M +IKP + T   G AAS G+LLL+ GEKGMR+A+PN R++
Sbjct: 139 MYLNCPGGSTYSVLAIYDCMSWIKPKVGTVAFGVAASQGALLLAGGEKGMRYAMPNTRVM 198

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP  G  G   D+ R   + ++ +++++ +Y    G+  E+V++  +RD  +SASEA 
Sbjct: 199 IHQPQTGCGGHVEDVRRQVNEAIEARQKIDRMYAAFTGQPLEKVQQYTERDRFLSASEAL 258

Query: 197 DWGVVDKVLMS 207
           ++G++D +L +
Sbjct: 259 EFGLIDGLLET 269


>gi|255557703|ref|XP_002519881.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis]
 gi|223540927|gb|EEF42485.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis]
          Length = 294

 Score =  210 bits (536), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 83/187 (44%), Positives = 119/187 (63%), Gaps = 1/187 (0%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P       RG  S D    LL+ERIVF+   I+D +A    +QLL L+A++P K+I L+I
Sbjct: 68  PQTPATAMRGAES-DAMGLLLRERIVFLGNNIDDFVADATISQLLLLDAQDPTKDIRLFI 126

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           N PGG ++A MAIYD +Q ++  +ST  +G +AS  S++L  G KG RFA+PN RI++HQ
Sbjct: 127 NCPGGSLSATMAIYDVVQLVRADVSTVALGISASTASIILGGGTKGKRFAMPNTRIMVHQ 186

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P GG SGQA D+E  A++I+  K  +  I     G+T E+V K +DRD  MS  EA ++G
Sbjct: 187 PLGGASGQAIDVEIQAREIMHNKNNVVRIISGFTGRTVEQVLKDIDRDRYMSPIEAVEYG 246

Query: 200 VVDKVLM 206
           ++D V+ 
Sbjct: 247 IIDGVID 253


>gi|325285511|ref|YP_004261301.1| ATP-dependent Clp protease proteolytic subunit [Cellulophaga lytica
           DSM 7489]
 gi|324320965|gb|ADY28430.1| ATP-dependent Clp protease proteolytic subunit [Cellulophaga lytica
           DSM 7489]
          Length = 182

 Score =  210 bits (536), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 84/181 (46%), Positives = 123/181 (67%), Gaps = 1/181 (0%)

Query: 26  TNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV 85
           + +G+    I  +LL ER VF+ G + D  A  +  +LL+L+ +  + EI L INSPGG 
Sbjct: 3   SKKGKVQEAIDEKLLNERKVFLWGMVNDDSAKHVIDRLLYLDLQGNE-EIQLVINSPGGY 61

Query: 86  VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS 145
           VT+G AIYDT++ +K P+ST C G AASMGS+LLS G KG RF  P+A++++HQPSGG  
Sbjct: 62  VTSGFAIYDTIKSLKSPVSTVCTGLAASMGSILLSVGAKGRRFIQPHAQVMIHQPSGGAG 121

Query: 146 GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           GQAS+IE  A++I+K +    +I   NCG+ +++V K  DRD+ M+A E+  +G+VD +L
Sbjct: 122 GQASNIEIQAKEIIKTRELSAKILADNCGQDFDKVMKDFDRDYWMNAEESVAYGIVDGIL 181

Query: 206 M 206
            
Sbjct: 182 E 182


>gi|302517758|ref|ZP_07270100.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sp. SPB78]
 gi|302426653|gb|EFK98468.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sp. SPB78]
          Length = 212

 Score =  210 bits (536), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 80/206 (38%), Positives = 124/206 (60%), Gaps = 2/206 (0%)

Query: 6   CAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF 65
               D   +   ++P   E+T+ G R+ D YSRLL+ RIVF+   ++D  A  +  QL+ 
Sbjct: 1   MRPTDRSPLARHVLPEFTERTSYGTRTLDPYSRLLEGRIVFLGTPLDDTAAADLAVQLMH 60

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           LE  +P ++ISLY+N PGG  TA  A+YDTM+ +   ++T+C+GQA S+G++LL+AG  G
Sbjct: 61  LEYADPDQDISLYLNCPGGEFTALTAVYDTMRHLSCDVATYCLGQAVSVGAVLLAAGAPG 120

Query: 126 MRFALPNARILLHQPSGG--FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
            R ALP ARI+L QP       GQ SD+   A+++ + +R    +     G+T EEV   
Sbjct: 121 KRAALPGARIVLRQPELPEGVRGQPSDLAVWAEELARERRTTERLLAAGTGRTEEEVRGD 180

Query: 184 LDRDHIMSASEACDWGVVDKVLMSRI 209
           ++RD +++A EA  +G+VD +   R 
Sbjct: 181 MERDLVLTAEEAVTYGIVDALADRRA 206


>gi|318060402|ref|ZP_07979125.1| ATP-dependent Clp protease, protease subunit [Streptomyces sp.
           SA3_actG]
 gi|318078402|ref|ZP_07985734.1| ATP-dependent Clp protease, protease subunit [Streptomyces sp.
           SA3_actF]
          Length = 212

 Score =  210 bits (536), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 80/202 (39%), Positives = 124/202 (61%), Gaps = 2/202 (0%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
           D   +   ++P   E+T+ G R+ D YSRLL+ RIVF+   ++D  A  +  QL+ LE  
Sbjct: 5   DRSPLARHVLPEFTERTSYGTRTLDPYSRLLEGRIVFLGTPLDDTAAADLAVQLMHLEYA 64

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           +P ++ISLY+N PGG  TA  A+YDTM+ +   ++T+C+GQA S+G++LL+AG  G R A
Sbjct: 65  DPDQDISLYLNCPGGEFTALTAVYDTMRHLSCDVATYCLGQAVSVGAVLLAAGAPGKRAA 124

Query: 130 LPNARILLHQPSGG--FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           LP ARI+L QP       GQ SD+   A+++ + +R    +     G+T EEV   ++RD
Sbjct: 125 LPGARIVLRQPELPEGMRGQPSDLAVWAEELARERRTTERLLAAGTGRTEEEVRGDMERD 184

Query: 188 HIMSASEACDWGVVDKVLMSRI 209
            +++A EA  +G+VD +   R 
Sbjct: 185 LVLTAEEAVTYGIVDALADRRA 206


>gi|139389121|ref|YP_001123839.1| ATP-dependent Clp protease proteolytic subunit [Nasturtium
           officinale]
 gi|160380558|sp|A4QLV8|CLPP_NASOF RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|134287044|dbj|BAF50663.1| ATP-dependent protease subunit [Nasturtium officinale]
          Length = 196

 Score =  210 bits (536), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 70/189 (37%), Positives = 116/189 (61%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNR--GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++         DIY+RL +ER+ F+  +++  ++  + + +++L  E   K++ 
Sbjct: 5   VPKVPFRSPGEGDTSWVDIYNRLYRERLFFLGQEVDTEISNQLISLMIYLSIEKDTKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V +GMA+YDTMQF++P + T CMG AAS+ S +L  G    R A P+AR++
Sbjct: 65  LFINSPGGWVISGMAVYDTMQFVRPDVQTICMGLAASIASFILVGGAITKRIAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  +  +YV+  GK    V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQTGEFILEAEELLKVRETITRVYVQRTGKPIWVVSEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGIVDLV 193


>gi|298346554|ref|YP_003719241.1| endopeptidase Clp [Mobiluncus curtisii ATCC 43063]
 gi|304389728|ref|ZP_07371687.1| ATP-dependent Clp protease proteolytic subunit [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|298236615|gb|ADI67747.1| endopeptidase Clp [Mobiluncus curtisii ATCC 43063]
 gi|304326904|gb|EFL94143.1| ATP-dependent Clp protease proteolytic subunit [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
          Length = 235

 Score =  210 bits (536), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 87/206 (42%), Positives = 135/206 (65%), Gaps = 3/206 (1%)

Query: 5   GCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLL 64
           G A       +  ++P   E+T  G +  D Y++L ++RIVF+  Q++D  A  + AQLL
Sbjct: 28  GMAPAMPSARY--ILPTFEERTAYGYKRQDPYAKLFEDRIVFLGNQVDDASADDVMAQLL 85

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
            LE+++P   I++YINSPGG  TA  AIYDTMQ+IKP I T C+GQAAS  ++LL+ G  
Sbjct: 86  VLESQDPDSLITMYINSPGGSFTAMTAIYDTMQYIKPEIQTVCLGQAASAAAVLLAGGAP 145

Query: 125 GMRFALPNARILLHQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
           G R ALPNAR+L+HQP+     GQA+D+   A++I +++  L E   K+  ++ E++ + 
Sbjct: 146 GKRLALPNARVLIHQPAIQGAQGQATDLAIIAEEIDRMRAWLEETLSKHSKRSVEQMHED 205

Query: 184 LDRDHIMSASEACDWGVVDKVLMSRI 209
           +DRD I++A +A ++G++D+VL  R 
Sbjct: 206 IDRDKILTAPQALEYGLIDQVLEPRK 231


>gi|298243373|ref|ZP_06967180.1| Endopeptidase Clp [Ktedonobacter racemifer DSM 44963]
 gi|297556427|gb|EFH90291.1| Endopeptidase Clp [Ktedonobacter racemifer DSM 44963]
          Length = 279

 Score =  210 bits (536), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 79/180 (43%), Positives = 121/180 (67%), Gaps = 3/180 (1%)

Query: 31  RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSP---GGVVT 87
           R  ++ SRLLKERIVFV   I D +A  +   LL+LE+++  KEISLYIN      G + 
Sbjct: 95  RINEVPSRLLKERIVFVPPFINDEIANYLIGVLLYLESDDASKEISLYINCHGSLDGNLY 154

Query: 88  AGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQ 147
            G+ IYDTM+++KP I+T C+G A  + ++LL+AG KG RF LP+++++LHQP     GQ
Sbjct: 155 YGLGIYDTMRYLKPEITTVCLGAAQGVAAVLLAAGTKGKRFILPHSQVVLHQPLSSVKGQ 214

Query: 148 ASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           ASDIE  A ++++ ++ L EI  ++ GK+ ++V +  DR   M+A EA ++G+VD+V+  
Sbjct: 215 ASDIEIRAHELLRQRQSLYEILAEHTGKSVDQVMQDADRRRYMTAKEAVEYGLVDEVITR 274


>gi|318060125|ref|ZP_07978848.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces sp.
           SA3_actG]
 gi|318076383|ref|ZP_07983715.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces sp.
           SA3_actF]
          Length = 218

 Score =  210 bits (536), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 90/193 (46%), Positives = 136/193 (70%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP  VE+T++G R YD Y++L +ER++F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 20  IVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISI 79

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQF+KP I T CMGQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 80  YINSPGGSMTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGAPGKRMALPNARVLI 139

Query: 138 HQPSGGFSG-QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQPS      Q SD+E  A++I++++ +L ++  K+     E++   ++RD I++A +A 
Sbjct: 140 HQPSSQTGREQLSDLEIAAKEIMRMRTQLEDMLAKHSTTPIEKIRDDIERDKILTAEDAL 199

Query: 197 DWGVVDKVLMSRI 209
            +G+VD++   R 
Sbjct: 200 AYGLVDQITTPRK 212


>gi|315655111|ref|ZP_07908013.1| ATP-dependent Clp protease, protease subunit [Mobiluncus curtisii
           ATCC 51333]
 gi|315657031|ref|ZP_07909916.1| ATP-dependent Clp protease, protease subunit [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
 gi|315490592|gb|EFU80215.1| ATP-dependent Clp protease, protease subunit [Mobiluncus curtisii
           ATCC 51333]
 gi|315492423|gb|EFU82029.1| ATP-dependent Clp protease, protease subunit [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
          Length = 236

 Score =  210 bits (536), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 87/206 (42%), Positives = 135/206 (65%), Gaps = 3/206 (1%)

Query: 5   GCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLL 64
           G A       +  ++P   E+T  G +  D Y++L ++RIVF+  Q++D  A  + AQLL
Sbjct: 28  GMAPAMPSARY--ILPTFEERTAYGYKRQDPYAKLFEDRIVFLGNQVDDASADDVMAQLL 85

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
            LE+++P   I++YINSPGG  TA  AIYDTMQ+IKP I T C+GQAAS  ++LL+ G  
Sbjct: 86  VLESQDPDSLITMYINSPGGSFTAMTAIYDTMQYIKPEIQTVCLGQAASAAAVLLAGGAP 145

Query: 125 GMRFALPNARILLHQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
           G R ALPNAR+L+HQP+     GQA+D+   A++I +++  L E   K+  ++ E++ + 
Sbjct: 146 GKRLALPNARVLIHQPAIQGAQGQATDLAIIAEEIDRMRAWLEETLSKHSKRSVEQMHED 205

Query: 184 LDRDHIMSASEACDWGVVDKVLMSRI 209
           +DRD I++A +A ++G++D+VL  R 
Sbjct: 206 IDRDKILTAPQALEYGLIDQVLEPRK 231


>gi|296399222|gb|ADH10397.1| clp protease proteolytic subunit [Selaginella moellendorffii]
          Length = 206

 Score =  210 bits (536), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 77/190 (40%), Positives = 120/190 (63%), Gaps = 3/190 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  + +  E     D ++RL +ER++F+   ++D +A  I   +++L  EN  K+I 
Sbjct: 5   VPKVSFRISGEEDMVRIDTHNRLYRERLLFLGQNMDDEIANQIICIMMYLNGENRSKDIY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG V AG+++YD MQF+ P + T C+G AASMGS +L+ G    R ALP+AR++
Sbjct: 65  LYINSPGGAVLAGISVYDMMQFVVPDVHTICVGLAASMGSFILTGGGITKRIALPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  + GQA +    A++I+K++  +  IY +  GK    V + ++RD  MSA EA
Sbjct: 125 IHQPASSFYEGQAGECLMEAEEILKLRDCITSIYARKTGKPLWVVSEDMERDVFMSAREA 184

Query: 196 CDWGVVDKVL 205
             +G++D V+
Sbjct: 185 RVYGIIDLVV 194


>gi|313816691|gb|EFS54405.1| Clp protease [Propionibacterium acnes HL059PA1]
          Length = 244

 Score =  210 bits (536), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 77/191 (40%), Positives = 125/191 (65%), Gaps = 2/191 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P   E+T+ G R  D Y++L ++RI+F+   + D +A  + AQLL L++ +   +IS+Y
Sbjct: 53  IPQWEERTSYGVRRVDPYTKLFEDRIIFLGTPVTDDIANAVMAQLLCLQSMDADHQISMY 112

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TA  AIYDTM +++P I T C+G AAS  ++LL+AG KG R +LPN+ +L+H
Sbjct: 113 INSPGGSFTAMTAIYDTMNYVRPDIQTICLGMAASAAAVLLAAGAKGQRLSLPNSTVLIH 172

Query: 139 QPSG--GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           QP+      GQA+DIE    +I +I++ +  +     G++ E++ K +DRD  ++A  A 
Sbjct: 173 QPAMGQATYGQATDIEILDDEIQRIRKLMENMLATATGQSVEQISKDIDRDKYLTAQGAK 232

Query: 197 DWGVVDKVLMS 207
           ++G++D +L S
Sbjct: 233 EYGLIDDILTS 243


>gi|111018525|ref|YP_701497.1| endopeptidase Clp [Rhodococcus jostii RHA1]
 gi|226360644|ref|YP_002778422.1| ATP-dependent Clp protease proteolytic subunit [Rhodococcus opacus
           B4]
 gi|116243124|sp|Q0SGJ7|CLPP3_RHOSR RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
           AltName: Full=Endopeptidase Clp 3
 gi|110818055|gb|ABG93339.1| endopeptidase Clp [Rhodococcus jostii RHA1]
 gi|226239129|dbj|BAH49477.1| ATP-dependent Clp protease proteolytic subunit [Rhodococcus opacus
           B4]
          Length = 202

 Score =  210 bits (536), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 76/177 (42%), Positives = 116/177 (65%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +  RL ++R + +TG+++D MA   C++L+ L A +P+++I LYINSPGG V AG+AIYD
Sbjct: 15  LADRLFRQRTILLTGEVDDAMAERACSELVLLAAADPKRDIVLYINSPGGSVFAGLAIYD 74

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM+ +   + T  MG AASMG +LL +G  G R +L ++RI++HQPS G  G A DI   
Sbjct: 75  TMKLVPNDVVTVAMGFAASMGQVLLCSGTHGKRISLAHSRIMMHQPSAGIGGTAVDIAIQ 134

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           A+ + ++KR+  EI     G   E++ +  DRD   +A EA D+G+VD+V+ S  +I
Sbjct: 135 AESLERMKRQSQEILAAETGHPVEQIAEDSDRDRWFTADEARDYGIVDRVVSSFAEI 191


>gi|149390378|ref|YP_001294377.1| ATP-dependent Clp protease proteolytic subunit [Dioscorea
           elephantipes]
 gi|160380552|sp|A6MMN2|CLPP_DIOEL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|148668070|gb|ABR01454.1| clp protease proteolytic subunit [Dioscorea elephantipes]
          Length = 203

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 74/188 (39%), Positives = 120/188 (63%), Gaps = 2/188 (1%)

Query: 19  VPMVVEQTNRGERSYDIY-SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           VP V  ++   E +  +  +RL +ER++F+  ++++ ++  +   +++L  E+  K++ L
Sbjct: 5   VPKVPFRSPGEEDAVWVDVNRLHRERLLFLGQEVDNEVSNQLVGLMVYLSIEDATKDLYL 64

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           +INSPGG V  GMAIYDTMQF+ P + T CMG AASMGSL+L  GE   R A P+AR+++
Sbjct: 65  FINSPGGWVIPGMAIYDTMQFVSPDVHTICMGLAASMGSLILVGGEITKRLAFPHARVMI 124

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP S  +  QA +    A++++K++  L ++YV+  G     V + ++RD  MSA+EA 
Sbjct: 125 HQPASSFYEAQAGEFILEAEELLKLRETLTKVYVQRTGNPLWAVSEDMERDAFMSATEAQ 184

Query: 197 DWGVVDKV 204
             G+VD V
Sbjct: 185 AHGIVDLV 192


>gi|309322471|ref|YP_003933985.1| clp protease proteolytic subunit [Eucalyptus grandis]
 gi|308223305|gb|ADO23613.1| clp protease proteolytic subunit [Eucalyptus grandis]
          Length = 195

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 72/188 (38%), Positives = 118/188 (62%), Gaps = 2/188 (1%)

Query: 19  VPMVVEQTNRGERSYDIY-SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           VP V  ++   E +  +  +RL +ER++F+  +++  ++  +   +++L  EN  K++ L
Sbjct: 5   VPKVPFRSPGEEDASWVDVNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIENDNKDLYL 64

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           +INSPGG V  G+AIYDTMQF++P + T CMG AASMGS +L  GE   R A P+AR+++
Sbjct: 65  FINSPGGWVIPGVAIYDTMQFVQPDVHTICMGLAASMGSFVLVGGEITKRLAFPHARVMI 124

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP S  +  Q  +    A++++K++  +  +YV+  GK    V + ++RD  MSA+EA 
Sbjct: 125 HQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQ 184

Query: 197 DWGVVDKV 204
             G+VD V
Sbjct: 185 AHGIVDLV 192


>gi|108773205|ref|YP_635771.1| ATP-dependent Clp protease proteolytic subunit [Chara vulgaris]
 gi|122237366|sp|Q1ACH6|CLPP_CHAVU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|77157861|gb|ABA61902.1| proteolytic subunit 2 of clp protease [Chara vulgaris]
          Length = 219

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 75/189 (39%), Positives = 122/189 (64%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     DIY+RL +ER++F+  +++D +A  +   +++L  E+  KE+ 
Sbjct: 5   VPKVPFRLPGEEDAVWVDIYNRLYRERLLFLGQRVDDEIANQLIGIMMYLNGEDDSKEMF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG V AG+A++D MQ++ P ++T CMG AASMGS +L  GE   R ALP+AR++
Sbjct: 65  MYINSPGGSVVAGIAVFDAMQYVGPDVTTICMGMAASMGSFILMGGEMTKRIALPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  + GQA +    A++++K++  + ++Y+   G+    + + +DRD  MSA EA
Sbjct: 125 IHQPASSYYDGQAGECLMEAEEVLKLRDCIAKVYMNRTGQPGWVIYRDMDRDIFMSALEA 184

Query: 196 CDWGVVDKV 204
             +G+VD V
Sbjct: 185 KSYGIVDLV 193


>gi|295838901|ref|ZP_06825834.1| Clp protease [Streptomyces sp. SPB74]
 gi|302519065|ref|ZP_07271407.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sp. SPB78]
 gi|197695453|gb|EDY42386.1| Clp protease [Streptomyces sp. SPB74]
 gi|302427960|gb|EFK99775.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sp. SPB78]
          Length = 223

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 90/193 (46%), Positives = 136/193 (70%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP  VE+T++G R YD Y++L +ER++F+  QI+D  A  + AQLL LE+ +P ++IS+
Sbjct: 25  IVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISI 84

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQF+KP I T CMGQAAS  ++LL+AG  G R ALPNAR+L+
Sbjct: 85  YINSPGGSMTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGAPGKRMALPNARVLI 144

Query: 138 HQPSGGFSG-QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQPS      Q SD+E  A++I++++ +L ++  K+     E++   ++RD I++A +A 
Sbjct: 145 HQPSSQTGREQLSDLEIAAKEIMRMRTQLEDMLAKHSTTPIEKIRDDIERDKILTAEDAL 204

Query: 197 DWGVVDKVLMSRI 209
            +G+VD++   R 
Sbjct: 205 AYGLVDQITTPRK 217


>gi|254572225|ref|XP_002493222.1| hypothetical protein [Pichia pastoris GS115]
 gi|238033020|emb|CAY71043.1| Hypothetical protein PAS_chr3_0979 [Pichia pastoris GS115]
 gi|328352764|emb|CCA39162.1| ATP-dependent Clp protease, protease subunit [Pichia pastoris CBS
           7435]
          Length = 226

 Score =  210 bits (534), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 87/193 (45%), Positives = 130/193 (67%), Gaps = 4/193 (2%)

Query: 23  VEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSP 82
               +    + D++++LL ERI+++ G I+D  AT I AQLL+LE+++  K+I++YINSP
Sbjct: 31  PPTPSNSPPAGDLFTKLLNERIIYLAGGIDDAQATSITAQLLYLESQSTSKQINIYINSP 90

Query: 83  GGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSG 142
           GG VTAG+AIYDT+Q+I+ P+ST C+GQA SM SLLL++G  G R  LPNA I++HQPS 
Sbjct: 91  GGSVTAGLAIYDTIQYIRAPVSTVCLGQACSMASLLLASGTHGKRLILPNATIMVHQPSS 150

Query: 143 GFS--GQASDIERHAQDIVKIKRRLNEIYVKNCG--KTYEEVEKTLDRDHIMSASEACDW 198
                GQA+DIE +A+ I+  K++L  +Y+K+     T +E+   L+RD  M   EA   
Sbjct: 151 ANGIKGQATDIEIYARHIINTKQKLQTLYLKHMSPTMTVDEITALLERDRFMEPEEAVSL 210

Query: 199 GVVDKVLMSRIDI 211
           G+ D+VL  +  +
Sbjct: 211 GLADRVLERKPPV 223


>gi|218245804|ref|YP_002371175.1| ATP-dependent Clp protease-like protein [Cyanothece sp. PCC 8801]
 gi|257058850|ref|YP_003136738.1| ATP-dependent Clp protease-like protein [Cyanothece sp. PCC 8802]
 gi|16506759|gb|AAL23932.1|AF423176_1 hypothetical protein [Cyanothece sp. PCC 8801]
 gi|218166282|gb|ACK65019.1| Endopeptidase Clp [Cyanothece sp. PCC 8801]
 gi|256589016|gb|ACU99902.1| Endopeptidase Clp [Cyanothece sp. PCC 8802]
          Length = 226

 Score =  210 bits (534), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 75/207 (36%), Positives = 120/207 (57%), Gaps = 19/207 (9%)

Query: 26  TNRGERSYDIYSRLLKERIVFVTG----------QIEDHMATLICAQLLFLEAENPQKEI 75
           T+      D+ S +LKERI+++            Q+   +  LI AQLL+L+ ++P K I
Sbjct: 14  TSFRTPPPDLESLMLKERIIYLGMPLFSSDDVKQQVGIDVTQLIIAQLLYLQFDDPDKPI 73

Query: 76  SLYINSPGGV---------VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
             YINS G            T   AI DTM ++KPPI T C+GQA    +++LSAG KG 
Sbjct: 74  YFYINSTGTSWYTGDAIGFETEAFAICDTMNYVKPPIHTICIGQAMGTAAMILSAGTKGC 133

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           R +LP+A I+L+Q   G  GQA+DI+  A++++  K+ + EI+ KN G+  E++ K  DR
Sbjct: 134 RASLPHATIVLNQNRSGARGQATDIQIRAKEVLSNKQTMLEIFSKNTGQPVEKIAKDTDR 193

Query: 187 DHIMSASEACDWGVVDKVLMSRIDIEE 213
              ++  +A ++G++D+VL S  ++ +
Sbjct: 194 TFYLTPQQAKEYGLIDRVLESTKELPK 220


>gi|255078128|ref|XP_002502644.1| predicted protein [Micromonas sp. RCC299]
 gi|226517909|gb|ACO63902.1| predicted protein [Micromonas sp. RCC299]
          Length = 279

 Score =  210 bits (534), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 76/193 (39%), Positives = 118/193 (61%), Gaps = 3/193 (1%)

Query: 19  VPMVVEQTNRG--ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA-ENPQKEI 75
           VP V  +T      +  DI++ L +ERIV+V   I++ +   + A +L+L++ E   K+I
Sbjct: 83  VPRVPYKTPNENSWQWVDIWNCLYRERIVWVGQTIDEELGNQLVATMLYLDSIEKGGKDI 142

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYIN+ GG V   MAI DTM +IK  +     G A +MG +LL+ G KG R ALPN  I
Sbjct: 143 YLYINTEGGDVVPTMAILDTMGYIKSDVGCVGFGSARAMGGMLLANGAKGKRAALPNTCI 202

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +LH P+G   G ASDI    ++++KI+ ++N++  +  G+  E+V + + RD  ++A +A
Sbjct: 203 MLHHPAGVARGSASDIHNEGKELLKIRAKINKMVSRATGQPEEKVHEDIRRDFHLTAEQA 262

Query: 196 CDWGVVDKVLMSR 208
            D+G+VDKVL  R
Sbjct: 263 LDYGIVDKVLYKR 275


>gi|169794098|ref|YP_001718462.1| ATP-dependent Clp protease proteolytic subunit [Manihot esculenta]
 gi|157695910|gb|ABV66179.1| clp protease proteolytic subunit [Manihot esculenta]
          Length = 195

 Score =  210 bits (534), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 75/188 (39%), Positives = 116/188 (61%), Gaps = 2/188 (1%)

Query: 19  VPMVVEQTNRGERSYDI-YSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           VP V  +    + S  I  +RL +ER++F+   ++  +A  +   +++L  EN  K++ L
Sbjct: 5   VPKVPFRNPGEDDSTWIDINRLYRERLLFLGQDVDSEIANQLIGLMVYLSIENATKDLYL 64

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           +INSPGG V  G+AIYDTMQF++P + T CMG AASMGS +L  G+   R A P+AR+++
Sbjct: 65  FINSPGGWVIPGIAIYDTMQFVRPDVQTVCMGLAASMGSFILVGGKITKRLAFPHARVMI 124

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP SG +  Q  +    A++++K++  L  IY +  GK    V + ++RD  MSA+EA 
Sbjct: 125 HQPISGYYEAQIVEFVLEAEELLKLREILTRIYAQRTGKPLWVVSEDMERDVFMSATEAQ 184

Query: 197 DWGVVDKV 204
             G+VD V
Sbjct: 185 AHGIVDLV 192


>gi|91984016|ref|YP_567102.1| ATP-dependent Clp protease proteolytic subunit [Vitis vinifera]
 gi|122230336|sp|Q0ZIZ4|CLPP_VITVI RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|91701674|gb|ABE47558.1| clp protease proteolytic subunit [Vitis vinifera]
          Length = 196

 Score =  210 bits (534), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 72/189 (38%), Positives = 116/189 (61%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNR--GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +          D+Y+RL +ER++F+  ++E  ++  +   +++L  E+  K++ 
Sbjct: 5   VPKVPFRNPGEDDISWIDVYNRLYRERLLFLGQEVESEISNQLIGLMIYLSIEDENKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            +INSPGG V  G+AIYDTMQF+ P + T C+G AASMGS +L  G    R A P+AR++
Sbjct: 65  FFINSPGGWVLPGIAIYDTMQFVPPEVHTICLGLAASMGSFILVGGTITKRLAFPHARVM 124

Query: 137 LHQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP+  F   QA +    A++++K++  + ++YV+  GK    V + L+RD  MSA+EA
Sbjct: 125 IHQPAAAFYEAQAGEFVMEAEELLKLREIITKVYVQRTGKPLWVVSEDLERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QTHGIVDLV 193


>gi|18860336|ref|NP_569653.1| ATP-dependent Clp protease proteolytic subunit [Psilotum nudum]
 gi|22653694|sp|Q8WHZ7|CLPP_PSINU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|18389489|dbj|BAB84241.1| ATP-dependent protease [Psilotum nudum]
          Length = 198

 Score =  210 bits (534), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 72/189 (38%), Positives = 118/189 (62%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+RL +ER++F+  Q++D +A  +   +++L  E+  +++ 
Sbjct: 5   VPKVPFRLPGEEDAGWVDVYNRLYRERLLFLGQQVDDEIANQLIGIMMYLNGEDENRDMY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            YINSPGG V  G+++YD MQF+ P + T CMG AASMGS +L+ GE   R ALP+AR++
Sbjct: 65  SYINSPGGAVLPGISVYDAMQFVVPDVHTICMGLAASMGSFILTGGEITKRIALPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  + GQA +    A++I+K++  +  +Y +   K    + + ++RD  MSA EA
Sbjct: 125 IHQPASSYYDGQAGECIMEAEEILKLRDCITRVYAQRTEKPLWVISEDMERDIFMSAKEA 184

Query: 196 CDWGVVDKV 204
             +G+VD +
Sbjct: 185 RAYGIVDLI 193


>gi|217075244|gb|ACJ85982.1| unknown [Medicago truncatula]
          Length = 195

 Score =  210 bits (534), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 69/189 (36%), Positives = 119/189 (62%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  Q    +     D+Y+RL +ER++F+  ++   ++  +   +++L +E+  +++ 
Sbjct: 5   VPKVPFQLPEEDEASWVDLYNRLFQERLLFLGQEVNTEISNQLVGLMVYLSSEDKTRDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V +GMAI+D MQ ++  + T C+G AASMGSLLL  GE   R A P+AR++
Sbjct: 65  LFINSPGGEVISGMAIFDIMQVVEAEVHTVCVGLAASMGSLLLVGGEFTKRLAFPHARVM 124

Query: 137 LHQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP+   + GQ  +    A++++K+++ +  IY +  GK   ++ + ++RD  MSA EA
Sbjct: 125 IHQPATSLYEGQVGECMLEAEELLKMRKTITNIYAQRTGKASWQIYRDMERDLFMSAEEA 184

Query: 196 CDWGVVDKV 204
             +G+VD V
Sbjct: 185 EAYGIVDTV 193


>gi|60117170|ref|YP_209504.1| ATP-dependent Clp protease proteolytic subunit [Huperzia lucidula]
 gi|68052074|sp|Q5SD28|CLPP_HUPLU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|50659978|gb|AAT80700.1| ATP-dependent protease [Huperzia lucidula]
          Length = 209

 Score =  210 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 73/189 (38%), Positives = 118/189 (62%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+RL +ER++F+  Q++D +A  +   +++   E+  +++ 
Sbjct: 5   VPKVPFRLPGDEDAVWIDVYNRLFRERLLFLGQQVDDELANQLICIMIYPNGEDDSRDMY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LY+NSPGG V AG++IYD MQF+ P + T C+G AASMGS +L+ GE   R ALP+AR++
Sbjct: 65  LYVNSPGGAVFAGISIYDAMQFVVPDVQTICIGLAASMGSFVLAGGEITKRIALPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  + GQ  +    A++++KI+  + ++Y +  GK    V +  +RD   SA EA
Sbjct: 125 IHQPASSYYEGQVGECIMEAEEVLKIRDCITKVYAQRTGKPLWVVSEDTERDVFTSAEEA 184

Query: 196 CDWGVVDKV 204
             +GV+D V
Sbjct: 185 KVYGVIDPV 193


>gi|172036825|ref|YP_001803326.1| ATP-dependent Clp protease-like protein [Cyanothece sp. ATCC 51142]
 gi|171698279|gb|ACB51260.1| ATP-dependent Clp protease, proteolytic subunit [Cyanothece sp.
           ATCC 51142]
          Length = 226

 Score =  210 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 75/199 (37%), Positives = 120/199 (60%), Gaps = 19/199 (9%)

Query: 34  DIYSRLLKERIVFVT----------GQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           D+ S LLKERI+++            Q+   +  LI AQLL+L+ +NP+K I  YINS G
Sbjct: 22  DLESLLLKERIIYLGLPLFSSDEIKQQVGIDVTQLIIAQLLYLQFDNPEKPIYFYINSTG 81

Query: 84  GV---------VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
                       T   AI DTM ++KPPI T C+GQA    +++LSAG KG R +LP+A 
Sbjct: 82  TSWYTGDAIGFETEAFAICDTMNYVKPPIHTICIGQAMGTAAMILSAGTKGCRASLPHAT 141

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I+L+Q   G  GQA+DI+  A++++  K+ + +I  +N G+T E++ K +DR   ++  +
Sbjct: 142 IVLNQNRSGARGQATDIQIRAKEVLHNKQTMLQILSENTGQTVEKIAKDIDRTFYLTPEK 201

Query: 195 ACDWGVVDKVLMSRIDIEE 213
           A ++G++D+VL S  ++ +
Sbjct: 202 AKEYGLIDRVLESTKELPK 220


>gi|67460473|sp|Q6A7F0|CLPP1_PROAC RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
          Length = 216

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 77/191 (40%), Positives = 126/191 (65%), Gaps = 2/191 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P   E+T+ G R  D Y++L ++RI+F+   + D +A  + AQLL L++ +  ++IS+Y
Sbjct: 25  IPQWEERTSYGVRRVDPYTKLFEDRIIFLGTPVTDDIANAVMAQLLCLQSMDADRQISMY 84

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TA  AIYDTM +++P I T C+G AAS  ++LL+AG KG R +LPN+ +L+H
Sbjct: 85  INSPGGSFTAMTAIYDTMNYVRPDIQTICLGMAASAAAVLLAAGAKGQRLSLPNSTVLIH 144

Query: 139 QPSG--GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           QP+      GQA+DIE    +I +I++ +  +     G++ E++ K +DRD  ++A  A 
Sbjct: 145 QPAMGQATYGQATDIEILDDEIQRIRKLMENMLATATGQSVEQISKDIDRDKYLTAQGAK 204

Query: 197 DWGVVDKVLMS 207
           ++G++D +L S
Sbjct: 205 EYGLIDDILTS 215


>gi|113954996|ref|YP_729944.1| ATP-dependent Clp protease-like protein [Synechococcus sp. CC9311]
 gi|113882347|gb|ABI47305.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. CC9311]
          Length = 225

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 82/198 (41%), Positives = 117/198 (59%), Gaps = 19/198 (9%)

Query: 34  DIYSRLLKERIVFVT----------GQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           D+ S +LKERIV++            Q+   +  LI AQLLFLE +NP K I  YINS G
Sbjct: 24  DLPSLMLKERIVYLGLPLFSDGDAKRQMGLDVTELIIAQLLFLEFDNPDKPIYFYINSTG 83

Query: 84  GV---------VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
                       T   AI DT++++KPP+ T C+GQA    +++LSAG KG R ALP+A 
Sbjct: 84  TSWYSGESIGFETEAFAICDTLRYVKPPVHTICIGQAMGTAAVILSAGTKGQRAALPHAS 143

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I+LHQP  G  GQA+DI+  A++++  KR + EI   N G++ EE+    DR   ++  E
Sbjct: 144 IVLHQPRSGARGQATDIQIRAKEVLHNKRAMLEILSTNTGRSVEELSADSDRMSYLTPQE 203

Query: 195 ACDWGVVDKVLMSRIDIE 212
           A  +G++D+VL SR D+ 
Sbjct: 204 AVTYGLIDRVLDSRKDLP 221


>gi|224080315|ref|XP_002306094.1| predicted protein [Populus trichocarpa]
 gi|118485273|gb|ABK94496.1| unknown [Populus trichocarpa]
 gi|222849058|gb|EEE86605.1| predicted protein [Populus trichocarpa]
          Length = 265

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 75/191 (39%), Positives = 120/191 (62%), Gaps = 4/191 (2%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            ++P V+  T  G    D+ S L + RI+F+   I   +A  + +QL+ L   + + +I 
Sbjct: 77  PIMPAVM--TPGGP--MDLSSVLFRNRIIFIGQPINSQVAQRVISQLVTLATIDEKTDIL 132

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LY+N PGG   + +AIYD M +IKP + T C G AAS G+LLLS GEKGMR+A+PNARI+
Sbjct: 133 LYLNCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQGALLLSGGEKGMRYAMPNARIM 192

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  G   D+ R   + V+ + +++++Y    G+  E+V++  +RD  +S SEA 
Sbjct: 193 IHQPQGGCGGHVEDVRRQVNEAVQARHKIDQMYATFTGQPLEKVQQYTERDRFLSTSEAM 252

Query: 197 DWGVVDKVLMS 207
           ++G++D +L +
Sbjct: 253 EFGLIDGILET 263


>gi|255556085|ref|XP_002519077.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis]
 gi|223541740|gb|EEF43288.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis]
          Length = 277

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 73/191 (38%), Positives = 118/191 (61%), Gaps = 4/191 (2%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            ++P V+  T  G    D+ S L + RI+F+   I   +A  + +QL+ L   +   +I 
Sbjct: 89  PIMPAVM--TPGGP--LDLQSVLFRNRIIFIGQPINSQVAQRVISQLVTLATIDENSDIL 144

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+N PGG   + +AIYD M +IKP + T C G AAS G+LLL+ GEKGMR+A+PNARI+
Sbjct: 145 MYLNCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQGALLLAGGEKGMRYAMPNARIM 204

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  G   D+ R   + V+ + +++ +Y    G+  E+V++  +RD  +S SEA 
Sbjct: 205 IHQPQGGCGGHVEDVRRQVNEAVQSRHKVDRMYAAFTGQPLEKVQQYTERDRFLSTSEAM 264

Query: 197 DWGVVDKVLMS 207
           ++G++D +L +
Sbjct: 265 EFGLIDGILET 275


>gi|115483692|ref|NP_001065516.1| Os10g0580800 [Oryza sativa Japonica Group]
 gi|12039365|gb|AAG46151.1|AC018727_3 putative Clp protease [Oryza sativa Japonica Group]
 gi|31433719|gb|AAP55198.1| ATP-dependent Clp protease proteolytic subunit 3, putative,
           expressed [Oryza sativa Japonica Group]
 gi|113640048|dbj|BAF27353.1| Os10g0580800 [Oryza sativa Japonica Group]
 gi|215737516|dbj|BAG96646.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215737683|dbj|BAG96813.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215737745|dbj|BAG96875.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215740822|dbj|BAG96978.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222613342|gb|EEE51474.1| hypothetical protein OsJ_32613 [Oryza sativa Japonica Group]
          Length = 293

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 81/173 (46%), Positives = 117/173 (67%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+   LL+ERIVF+  +IED +A  + +QLL L+A +P  +I L++NSPGG ++A MAIY
Sbjct: 80  DVMGLLLRERIVFLGNEIEDFLADAVVSQLLLLDAVDPNSDIRLFVNSPGGSLSATMAIY 139

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D MQ ++  +ST  +G A S  S++L  G KG RFA+PN RI++HQP GG SGQA D+E 
Sbjct: 140 DVMQLVRADVSTIGLGIAGSTASIILGGGTKGKRFAMPNTRIMIHQPVGGASGQALDVEV 199

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
            A++I+  KR +  +     G+T E+VEK +DRD  M   EA D+G++D V+ 
Sbjct: 200 QAKEILTNKRNVIRLISGFTGRTPEQVEKDIDRDRYMGPLEAVDYGLIDSVID 252


>gi|305664459|ref|YP_003860746.1| Protease subunit of ATP-dependent Clp protease [Maribacter sp.
           HTCC2170]
 gi|88708476|gb|EAR00712.1| Protease subunit of ATP-dependent Clp protease [Maribacter sp.
           HTCC2170]
          Length = 182

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 85/181 (46%), Positives = 127/181 (70%), Gaps = 1/181 (0%)

Query: 26  TNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV 85
           + +G+    I  +LL+ER VF+ G ++D  A  +  +LL+L+ +   KEI L+INSPGG 
Sbjct: 3   SKKGKVQEAIDEKLLEERKVFLWGMVDDDSAKHVIDRLLYLDMQ-NNKEIQLFINSPGGY 61

Query: 86  VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS 145
           VT+G A+YDT++ +K P+ST C G AASMGS+LLS G+KG RF  P+A++++HQPSGG  
Sbjct: 62  VTSGFAMYDTIKSLKSPVSTICTGLAASMGSILLSVGKKGRRFIQPHAQVMIHQPSGGAR 121

Query: 146 GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           GQAS+IE  A++I+K K    +I   NCG+ ++ V +  DRD+ M+A E+ ++G+VD VL
Sbjct: 122 GQASNIEIQAKEIIKTKELSAQILADNCGQDFDTVMRDFDRDYWMNAEESIEYGIVDGVL 181

Query: 206 M 206
            
Sbjct: 182 E 182


>gi|126657895|ref|ZP_01729048.1| ATP-dependent Clp protease proteolytic subunit [Cyanothece sp.
           CCY0110]
 gi|126620835|gb|EAZ91551.1| ATP-dependent Clp protease proteolytic subunit [Cyanothece sp.
           CCY0110]
          Length = 226

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 75/199 (37%), Positives = 119/199 (59%), Gaps = 19/199 (9%)

Query: 34  DIYSRLLKERIVFVT----------GQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           D+ S LLKERI+++            Q+   +  LI AQLL+L+ +NP K I  YINS G
Sbjct: 22  DLESLLLKERIIYLGLPLFSSDEIKQQVGIDVTQLIIAQLLYLQFDNPDKPIFFYINSTG 81

Query: 84  GV---------VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
                       T   AI DTM ++KPPI T C+GQA    +++LSAG KG R +LP+A 
Sbjct: 82  TSWYTGDAIGFETEAFAICDTMNYVKPPIHTICIGQAMGTAAMILSAGTKGCRASLPHAT 141

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I+L+Q   G  GQA+DI+  A++++  K+ + +I  +N G+T E++ K +DR   ++  +
Sbjct: 142 IVLNQNRSGARGQATDIQIRAKEVLHNKQTMLQILSQNTGQTPEKIAKDIDRTFYLTPEK 201

Query: 195 ACDWGVVDKVLMSRIDIEE 213
           A ++G++D+VL S  ++ +
Sbjct: 202 AKEYGLIDRVLESTKELPK 220


>gi|149390292|ref|YP_001294123.1| clp protease proteolytic subunit [Chloranthus spicatus]
 gi|160380547|sp|A6MME7|CLPP_CHLSC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|146744212|gb|ABQ43284.1| clp protease proteolytic subunit [Chloranthus spicatus]
          Length = 201

 Score =  209 bits (532), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 71/188 (37%), Positives = 116/188 (61%), Gaps = 2/188 (1%)

Query: 19  VPMVVEQTNRGERSYDIY-SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           VP V  ++   E +  +  +RL +ER++F+  +++  ++  +   +++L  E+  +++ L
Sbjct: 5   VPKVPFRSPGEEDAVWVDVNRLHRERLLFLGQEVDSEISNQLVGLMVYLSIEDDTRDLYL 64

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           +INSPGG V  G+ IYDTMQF+ P + T CMG AASMGS +L  GE   R A P+ARI++
Sbjct: 65  FINSPGGWVIPGLTIYDTMQFVPPDVHTICMGLAASMGSFILVGGEITKRLAFPHARIMI 124

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP S  +  QA +    A++++K++  L  +YV+  G     V + ++RD  MSA+EA 
Sbjct: 125 HQPASSFYEAQAGEFILEAEELLKLRETLTRVYVQRTGNPLWIVSEDMERDVFMSATEAQ 184

Query: 197 DWGVVDKV 204
             G+VD V
Sbjct: 185 AHGIVDLV 192


>gi|326909417|ref|YP_004327687.1| ATP-dependent Clp protease proteolytic subunit [Hevea brasiliensis]
 gi|308523531|gb|ADO33581.1| ATP-dependent Clp protease proteolytic subunit [Hevea brasiliensis]
          Length = 195

 Score =  209 bits (532), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 72/188 (38%), Positives = 116/188 (61%), Gaps = 2/188 (1%)

Query: 19  VPMVVEQTNRGERSYDIY-SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           VP V  +    + S  I  +RL +ER++F+   ++  ++  +   +++L  E+  K++ L
Sbjct: 5   VPKVPFRNPGEDDSIWIDVNRLYRERLLFLGQDVDSEISNQLIGLMVYLSIESETKDLYL 64

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           +INSPGG V  G+AIYDTMQF++P + T CMG AASMGS +L  G+   R A P+AR+++
Sbjct: 65  FINSPGGWVIPGIAIYDTMQFVRPDVQTVCMGLAASMGSFILVGGKITKRLAFPHARVMI 124

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP +G +  Q  +    A++++K++  L  IY +  GK    V + ++RD  MSA+EA 
Sbjct: 125 HQPIAGFYEAQIGEFVLEAEELLKLREILTRIYAQRTGKPLWVVSEDMERDVFMSATEAQ 184

Query: 197 DWGVVDKV 204
             G+VD V
Sbjct: 185 AHGIVDLV 192


>gi|229494686|ref|ZP_04388444.1| Clp protease [Rhodococcus erythropolis SK121]
 gi|229318353|gb|EEN84216.1| Clp protease [Rhodococcus erythropolis SK121]
          Length = 202

 Score =  209 bits (532), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 79/190 (41%), Positives = 122/190 (64%), Gaps = 1/190 (0%)

Query: 26  TNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV 85
           T+ G R   +  RL ++R + +TG++ D MA  +C++L+ L   +P++++ LYINSPGG 
Sbjct: 7   TDTGYRDL-LTDRLFRQRTILLTGEVNDAMAERVCSELVLLATTDPKRDVVLYINSPGGS 65

Query: 86  VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS 145
           V AG+AIYDTM+ I   + T  MG AASMG +LL +G  G R +L ++RI++HQPS G  
Sbjct: 66  VFAGLAIYDTMKLIPNDVVTVAMGFAASMGQVLLCSGTHGKRNSLAHSRIMMHQPSAGIG 125

Query: 146 GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           G A DI   A+ +  +KR+  EI     G+T EE+E   DRD   +A +A ++G+VD+V+
Sbjct: 126 GTAVDIAIQAESLELMKRQSQEILAAETGRTVEEIETDSDRDRWFTAEQAREYGIVDRVV 185

Query: 206 MSRIDIEEKS 215
            S  +I  ++
Sbjct: 186 TSFAEIAPQA 195


>gi|34501388|ref|NP_904176.1| ATP-dependent Clp protease proteolytic subunit [Physcomitrella
           patens subsp. patens]
 gi|68052159|sp|Q6YXM7|CLPP_PHYPA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|34494758|dbj|BAC85025.1| ATP-dependent protease proteolytic subunit [Physcomitrella patens
           subsp. patens]
          Length = 199

 Score =  209 bits (532), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 76/190 (40%), Positives = 121/190 (63%), Gaps = 4/190 (2%)

Query: 19  VPMVVEQTNRGER--SYDIYS-RLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           VP V  +    E     D+Y+ RL +ER++F+   ++D +A  +   +++L  E+  K++
Sbjct: 5   VPKVPFRLPGEEDAVWIDVYNNRLYRERLLFLGQHVDDEIANQLIGIMMYLNGEDENKDM 64

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG V AG+++YD MQF+ P + T CMG AASMGS +L+ GE   R ALP+AR+
Sbjct: 65  YLYINSPGGAVLAGISVYDAMQFVVPDVHTICMGLAASMGSFILAGGEITKRIALPHARV 124

Query: 136 LLHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           ++HQP S  + GQA +    A++++K++  +  +YV+  GK    + + ++RD  MSA E
Sbjct: 125 MIHQPASSYYDGQAGECIMEAEEVLKLRDYITRVYVQRIGKPLWVISEDMERDVFMSAQE 184

Query: 195 ACDWGVVDKV 204
           A  +G+VD V
Sbjct: 185 AKTYGIVDLV 194


>gi|124302931|ref|YP_001023726.1| ATP-dependent Clp protease proteolytic subunit [Angiopteris evecta]
 gi|160380542|sp|A2T358|CLPP_ANGEV RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|110628329|gb|ABG79625.1| clp protease proteolytic subunit [Angiopteris evecta]
          Length = 197

 Score =  209 bits (532), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 72/188 (38%), Positives = 121/188 (64%), Gaps = 2/188 (1%)

Query: 19  VPMVVEQTNRGERSYDIY-SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           VP V  +    E +  +  +RL +ER++F+  Q++D +A  +   +++L  E+  +++ L
Sbjct: 5   VPKVPFRLPGEEDAVWVDVNRLYRERLLFLGQQVDDEIANQLIGIMMYLNGEDETQDMYL 64

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+++YD MQF+ P + T CMG AASMGS +L+ GE   R ALP+AR+++
Sbjct: 65  YINSPGGAVLPGISVYDAMQFVVPDVHTICMGLAASMGSSILTGGEITKRIALPHARVMI 124

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP S  + GQA +    A++++K++  + ++YV+  GK    + + ++RD  MSA EA 
Sbjct: 125 HQPASSYYDGQAGECIMEAEEVLKLRDCITKVYVQRTGKPLWVISEDMERDVFMSAEEAK 184

Query: 197 DWGVVDKV 204
            +G+VD +
Sbjct: 185 AYGIVDLI 192


>gi|116785923|gb|ABK23909.1| unknown [Picea sitchensis]
 gi|148907936|gb|ABR17088.1| unknown [Picea sitchensis]
          Length = 293

 Score =  209 bits (532), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 74/201 (36%), Positives = 123/201 (61%), Gaps = 3/201 (1%)

Query: 19  VPMVVEQTNRG--ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            P V  +T      +  DI++ L +ERI+++   I++  +  I A +L+L++ +  K+I+
Sbjct: 85  TPRVPYRTPGEGSWQWVDIWNALYRERIIYIAQYIDEEFSNQILATMLYLDSVDSSKDIT 144

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYIN PGG VT  M++YDTMQ +K PI T C+G A ++   LL+AG KG R A P++R++
Sbjct: 145 LYINGPGGDVTPCMSMYDTMQSLKSPIGTLCLGYAFNLAGFLLAAGAKGKRGASPSSRVV 204

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           L   +G   GQA DIE  A+++++ +  + E   +N G+  E++ K L R    +A EA 
Sbjct: 205 LQSVAGSARGQADDIENEAKELIRTRNYMFEQLARNTGQPLEKITKDLRRVMYFNAQEAL 264

Query: 197 DWGVVDKVLM-SRIDIEEKSK 216
           ++G++D++L   RI  +  SK
Sbjct: 265 EYGIIDRILRPPRIKPDASSK 285


>gi|110227104|ref|YP_665583.1| ATP-dependent Clp protease proteolytic subunit [Populus alba]
 gi|134093226|ref|YP_001109527.1| ATP-dependent Clp protease proteolytic subunit [Populus
           trichocarpa]
 gi|122224626|sp|Q14FD2|CLPP_POPAL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|160380562|sp|A4GYT6|CLPP_POPTR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|109945542|dbj|BAE97230.1| ATP-dependent Clp protease proteolytic subunit [Populus alba]
 gi|133712088|gb|ABO36731.1| ATP-dependent CLP protease proteolytic subunit [Populus
           trichocarpa]
          Length = 196

 Score =  209 bits (532), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 71/189 (37%), Positives = 116/189 (61%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    +     D+Y+RL +ER++F+   I+  ++  +   +++L  E+  K++ 
Sbjct: 5   VPKVPFRNPGEDSSNWIDVYNRLYRERLLFLGQDIDSEISNQLIGLMVYLSTESEIKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYDTMQF++P + T CMG AASMGS +L  G+   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGIAIYDTMQFVRPDVQTVCMGLAASMGSFILVGGKITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP +  +  Q  +    A++++K++  L  +Y +  GK    V + ++RD  MSA+EA
Sbjct: 125 IHQPFAAFYEAQIGEFVLEAEELLKLREILTRVYAQRTGKPLWVVSEDMERDVFMSAAEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QVHGIVDLV 193


>gi|302800375|ref|XP_002981945.1| hypothetical protein SELMODRAFT_233821 [Selaginella moellendorffii]
 gi|302802337|ref|XP_002982924.1| hypothetical protein SELMODRAFT_234106 [Selaginella moellendorffii]
 gi|300149514|gb|EFJ16169.1| hypothetical protein SELMODRAFT_234106 [Selaginella moellendorffii]
 gi|300150387|gb|EFJ17038.1| hypothetical protein SELMODRAFT_233821 [Selaginella moellendorffii]
          Length = 213

 Score =  208 bits (531), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 79/168 (47%), Positives = 114/168 (67%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           LL++R VF+  Q++D +A  I +QLL L+A + +KEI ++IN PGG V+A M IYD +Q 
Sbjct: 4   LLRQRTVFLGHQLDDFVADAIISQLLLLDAMDSKKEIRMFINCPGGSVSAAMGIYDAIQL 63

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
            +  +ST   G AAS  S++L+ G KG RFA+PN RI++HQP GG SGQA D+E  A++I
Sbjct: 64  CRAEVSTIAFGLAASTASVILAGGTKGKRFAMPNTRIMVHQPMGGASGQAIDVEIQAKEI 123

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           +  K     I  +  GK +E+VEK +DRD  MSA EA ++G++D V+ 
Sbjct: 124 MFHKNNFTRILAEITGKPFEQVEKDIDRDRYMSAVEAMEYGLIDGVID 171


>gi|255636441|gb|ACU18559.1| unknown [Glycine max]
          Length = 273

 Score =  208 bits (531), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 74/206 (35%), Positives = 119/206 (57%), Gaps = 8/206 (3%)

Query: 2   SFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICA 61
           S+     K +  +     P V+  T  G    D+ S L + RI+F+   +   +A  + +
Sbjct: 74  SYGAIEAKGNPPI----TPAVM--TPGGP--LDLSSVLFRNRIIFIGQPVNSQVAQRVIS 125

Query: 62  QLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSA 121
           QL+ L   +   +I +YIN PGG   + +AIYD M +IKP + T C G AAS G+LLL+ 
Sbjct: 126 QLVTLATIDENADILVYINCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQGALLLAG 185

Query: 122 GEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVE 181
           GEKGMR+A+PNARI++HQP  G  G   D+ R   + V+ + +++++Y    G+  E+V+
Sbjct: 186 GEKGMRYAMPNARIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKIDKMYSVFTGQPLEKVQ 245

Query: 182 KTLDRDHIMSASEACDWGVVDKVLMS 207
           +  +RD  +S  EA ++G +D VL +
Sbjct: 246 QYTERDRFLSVFEALEFGFIDGVLET 271


>gi|290489464|gb|ADD31116.1| clp protease proteolytic subunit protein [Gunnera manicata]
          Length = 198

 Score =  208 bits (531), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 72/190 (37%), Positives = 124/190 (65%), Gaps = 3/190 (1%)

Query: 19  VPMVVEQTNRGERSY--DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E +Y  DIY+RL + RI+F+  ++   ++  + + L++L  E  +K++ 
Sbjct: 5   VPRVPHRIPGEEDAYWVDIYNRLYRNRIMFLGQEVSSEISNQLISLLVYLTIEEDRKDVF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+A+YDTM+F++P I T CMG AASMGS LL+ GE   R A P+AR++
Sbjct: 65  LFINSPGGWVVPGVALYDTMRFVQPEIHTICMGMAASMGSFLLAGGEITKRIAFPHARVM 124

Query: 137 LHQPSGGFSGQAS-DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP+  F    + +    +++++K++  + ++YV+  GK +  + + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYETRTGEFILESEELLKLREIITKVYVQRTGKPFWVISEDMERDVFMSATEA 184

Query: 196 CDWGVVDKVL 205
             +G++D +L
Sbjct: 185 QAYGLIDIIL 194


>gi|262400762|gb|ACY66251.1| ATP-dependent Clp protease proteolytic subunit [Brassica napus]
          Length = 196

 Score =  208 bits (531), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 71/189 (37%), Positives = 117/189 (61%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNR--GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++         DI +RL +ER+ F+  +++  ++  + + +++L  E   K++ 
Sbjct: 5   VPKVPFRSPGEGDTSWVDIINRLYRERLFFLGQEVDTEISNQLISLMIYLSIEKDTKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V +GMAIYDTMQF++P + T CMG AAS+ S +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVISGMAIYDTMQFVRPDVQTICMGLAASIASFILVGGEITKRIAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  ++   A++++K++  +  +YV+  GK    V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQTGEVILEAEELLKLRETITRVYVQRTGKPIWVVSEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGIVDLV 193


>gi|153805564|ref|YP_001382140.1| ATP-dependent Clp protease proteolytic subunit [Leptosira
           terrestris]
 gi|160380555|sp|A6YG63|CLPP_LEPTE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|134270095|gb|ABO69284.1| proteolytic subunit 2 of clp protease [Leptosira terrestris]
          Length = 196

 Score =  208 bits (531), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 76/188 (40%), Positives = 117/188 (62%), Gaps = 2/188 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V       E     D+Y  L +ER++ + G + D     I + L++L   +  KE  
Sbjct: 5   VPKVFYALPDEEEADWIDLYHCLYQERLIVICGDLNDEAVNQIVSVLIYLSTRDDSKEFF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VT+G+AIYD M+F   P++T  +G +ASM S +L+ G+ G R A P++RI+
Sbjct: 65  IYINSPGGSVTSGIAIYDAMRFNNTPVNTIAVGISASMASFILAGGDIGKRLAFPHSRIM 124

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQ+S+I   AQ++V+I+R++  IY +  G+  + + + +DRD  MSA EA 
Sbjct: 125 IHQPEGGSEGQSSEIVHEAQEVVRIRRQVARIYAQRTGQPLDTIARDMDRDQFMSAREAK 184

Query: 197 DWGVVDKV 204
            +G+VD V
Sbjct: 185 TYGIVDLV 192


>gi|325210985|ref|YP_004286029.1| clp protease proteolytic subunit [Gossypium thurberi]
 gi|290775847|gb|ADD62343.1| clp protease proteolytic subunit [Gossypium thurberi]
          Length = 196

 Score =  208 bits (530), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 73/189 (38%), Positives = 117/189 (61%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGERSYDIY-SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           VP V  +    E +  +  +RL +ER++F+  +++  ++  +   +++L  EN  K++ L
Sbjct: 5   VPKVPFRNPGEEDAVWVDVNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIENDTKDLYL 64

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN-ARIL 136
           +INSPGG V  G+AIYDTMQF++P + T CMG AASMGS LL+ GE   R A P+  R++
Sbjct: 65  FINSPGGWVIPGVAIYDTMQFVQPDVHTICMGLAASMGSFLLAGGEITKRLAFPHARRVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  L  +YV+  GK    V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQTGEFILEAEELLKLRESLTRVYVQRTGKPLWVVSEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGIVDLV 193


>gi|69214833|gb|AAZ03799.1| ATP-depedent Clp protease proteolytic subunit [Acorus americanus]
          Length = 195

 Score =  208 bits (530), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 69/188 (36%), Positives = 116/188 (61%), Gaps = 2/188 (1%)

Query: 19  VPMVVEQTNRGERSYDI-YSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           VP V  ++   E +  +  +RL +ER++F+  +++  ++  +   +++L  E+  ++  L
Sbjct: 5   VPKVPFRSPGEEDAAWVDINRLHRERLLFLGQELDSEISNQLVGLMVYLSIEDKTRDFFL 64

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           +INSPGG V  G+ +YDTMQF+ P + T CMG AASMGS +L  GE   R A P+AR+++
Sbjct: 65  FINSPGGWVIPGIGLYDTMQFVPPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMI 124

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP S  +  QA +    A++++K++  L  +YV+  GK    V + ++RD  +SA+EA 
Sbjct: 125 HQPASSFYEAQAGEFVLEAEELLKLRETLTRVYVQRTGKPLWVVSEDMERDVFLSATEAQ 184

Query: 197 DWGVVDKV 204
             G+VD V
Sbjct: 185 AHGIVDLV 192


>gi|18414804|ref|NP_567521.1| ATP-dependent Clp protease proteolytic subunit, putative
           [Arabidopsis thaliana]
 gi|75301253|sp|Q8LB10|CLPR4_ARATH RecName: Full=ATP-dependent Clp protease proteolytic
           subunit-related protein 4, chloroplastic; Short=ClpR4;
           Flags: Precursor
 gi|21593086|gb|AAM65035.1| ATP-dependent Clp protease proteolytic subunit ClpR4, putative
           [Arabidopsis thaliana]
 gi|26450085|dbj|BAC42162.1| putative ClpP protease complex subunit ClpR4 [Arabidopsis thaliana]
          Length = 305

 Score =  208 bits (530), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 78/215 (36%), Positives = 123/215 (57%), Gaps = 11/215 (5%)

Query: 11  SEDVFLGLVPMVVE---QTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           S     G+V MV+     +   +   D+ S L K RIV++   +   +  LI A+ L+L+
Sbjct: 79  SSKPKRGVVTMVIPFSKGSAHEQPPPDLASYLFKNRIVYLGMSLVPSVTELILAEFLYLQ 138

Query: 68  AENPQKEISLYINSPG--------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
            E+ +K I LYINS G        G  T   AIYD M ++KPPI T C+G A    +LLL
Sbjct: 139 YEDEEKPIYLYINSTGTTKNGEKLGYDTEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLL 198

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
           +AG KG R ALP++ I++ QP   F GQA+D+E   ++I  IK  + ++Y K+ GK+ E+
Sbjct: 199 TAGAKGNRSALPSSTIMIKQPIARFQGQATDVEIARKEIKHIKTEMVKLYSKHIGKSPEQ 258

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           +E  + R    S +EA ++G++DKV+ +    +++
Sbjct: 259 IEADMKRPKYFSPTEAVEYGIIDKVVYNERGSQDR 293


>gi|307152498|ref|YP_003887882.1| Endopeptidase Clp [Cyanothece sp. PCC 7822]
 gi|306982726|gb|ADN14607.1| Endopeptidase Clp [Cyanothece sp. PCC 7822]
          Length = 222

 Score =  208 bits (530), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 79/199 (39%), Positives = 121/199 (60%), Gaps = 19/199 (9%)

Query: 34  DIYSRLLKERIVFVTG----------QIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           D+ S LLKERIV++            Q+   +  LI AQLLFL+ ++P K I  YINS G
Sbjct: 18  DLESLLLKERIVYLGMPLFSSDDIKQQVGIDVTQLIIAQLLFLQFDDPDKPIYFYINSTG 77

Query: 84  GV---------VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
                       T   AI DT+ +IKPP+ T C+GQA    +++LSAG KG R +LP+A 
Sbjct: 78  TSWYTGDAIGFETEAFAICDTINYIKPPVHTICIGQAMGTAAMILSAGTKGCRASLPHAT 137

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I+L+Q   G  GQA+DI+  A++++  KR + EI+ KN G+  E++ K LDR   ++ ++
Sbjct: 138 IVLNQNRTGAQGQATDIQIRAKEVLANKRTMLEIFSKNTGQAIEKLAKDLDRTFYLTPAQ 197

Query: 195 ACDWGVVDKVLMSRIDIEE 213
           A ++G++D+VL SR ++ +
Sbjct: 198 AKEYGLIDRVLESRKELPK 216


>gi|139389667|ref|YP_001123224.1| ATP-dependent protease subunit [Arabis hirsuta]
 gi|160380543|sp|A4QK43|CLPP_ARAHI RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|134286422|dbj|BAF50048.1| ATP-dependent protease subunit [Arabis hirsuta]
          Length = 196

 Score =  208 bits (530), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 71/189 (37%), Positives = 115/189 (60%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNR--GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++         DIY+RL +ER+ F+  +++  ++  + + +++L  E   K++ 
Sbjct: 5   VPKVPFRSPGEGDTSWVDIYNRLYRERLFFLGQEVDTEISNQLISLMIYLSIEKDTKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V +GMAIYDTMQF++P + T  MG AAS+ S +L  G    R A P+AR++
Sbjct: 65  LFINSPGGWVISGMAIYDTMQFVRPDVQTIGMGLAASIASFILVGGAITKRIAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++KI+  +  +YV+  GK    V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQTGEFILEAEELLKIRETITRVYVQRTGKPIWVVSEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGIVDLV 193


>gi|262201603|ref|YP_003272811.1| endopeptidase Clp [Gordonia bronchialis DSM 43247]
 gi|262084950|gb|ACY20918.1| Endopeptidase Clp [Gordonia bronchialis DSM 43247]
          Length = 201

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 81/189 (42%), Positives = 125/189 (66%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VV +T +GER  D+YSRLL+ERI+++   ++D +A  + AQ+L L+++NP+  I LY
Sbjct: 6   IPNVVSRTPQGERVMDVYSRLLEERIIYLGTPVDDDVANALIAQILHLDSDNPEAPIDLY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INS GG V A  A+YDTMQ+   PI+T C+GQA S  +LLL+AG+ G R  LP+AR+LLH
Sbjct: 66  INSTGGSVNATFALYDTMQYCHAPIATTCVGQALSSSALLLAAGDAGRRSVLPHARVLLH 125

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSG   G   D+   A++I++++  + E   ++ G+    + +  DRD ++ A E  D+
Sbjct: 126 QPSGQGRGTIPDLILAAEEILRVREEMEEALSRHTGRDIATLRRDTDRDRVLRADEIVDY 185

Query: 199 GVVDKVLMS 207
           G+ D V+  
Sbjct: 186 GIADAVIAH 194


>gi|290489450|gb|ADD31109.1| clp protease proteolytic subunit protein [Phoradendron serotinum]
          Length = 196

 Score =  208 bits (529), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 76/189 (40%), Positives = 117/189 (61%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGE--RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     DIY+RL +ER++F+   ++  ++  + + +++L  EN  K+  
Sbjct: 5   VPRVPFRIPGEEYSTWVDIYNRLYRERLLFLGQGVDSEISNQLISLMVYLSIENETKDFY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            +INSPGG V  G+AIYDTMQF++P + T CMG AASMGS +L  G    R A P+AR++
Sbjct: 65  FFINSPGGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGSITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  F  Q  +    A++++K++  L ++YV+  GKT   V + ++RD  MSA+EA
Sbjct: 125 IHQPASSYFEAQTVEFILEAEELLKLRETLTQVYVQRTGKTLWIVSEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QTHGIVDLV 193


>gi|242040043|ref|XP_002467416.1| hypothetical protein SORBIDRAFT_01g027680 [Sorghum bicolor]
 gi|241921270|gb|EER94414.1| hypothetical protein SORBIDRAFT_01g027680 [Sorghum bicolor]
          Length = 289

 Score =  208 bits (529), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 83/173 (47%), Positives = 117/173 (67%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+   LL+ERIVF+  +IED +A  + +QLL L+A +P  +I L++NSPGG ++A MAIY
Sbjct: 76  DVMGLLLRERIVFLGNEIEDFLADAVVSQLLLLDAIDPDSDIRLFVNSPGGSLSATMAIY 135

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D MQ ++  +ST  MG A S  S++L  G KG RFA+PN RI++HQP GG SGQA D+E 
Sbjct: 136 DVMQLVRADVSTIGMGIAGSTASIILGGGTKGKRFAMPNTRIMIHQPVGGASGQALDVEV 195

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
            A++I+  KR +  I     G+T E+VEK +DRD  M   EA D+G++D V+ 
Sbjct: 196 QAKEILTNKRNVIRIVSGFTGRTLEQVEKDIDRDRYMGPLEAVDYGLIDGVID 248


>gi|229577779|ref|YP_002836115.1| clp protease proteolytic subunit [Megaleranthis saniculifolia]
 gi|226933907|gb|ACO92040.1| clp protease proteolytic subunit [Megaleranthis saniculifolia]
          Length = 201

 Score =  208 bits (529), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 72/189 (38%), Positives = 116/189 (61%), Gaps = 4/189 (2%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     D+Y RL +ER++F+  +++  ++  +   +++L  E+  +++ 
Sbjct: 5   VPKVPFRSPGEEDAVWVDVY-RLHRERLLFLGQEVDSEISNQLIGLMVYLSIEDEIRDLY 63

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYDTMQF+ P + T CMG AASMGS +L  GE   R A P+AR++
Sbjct: 64  LFINSPGGWVIPGVAIYDTMQFVPPDVHTICMGLAASMGSFILVGGEITKRIAFPHARVM 123

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  L  +YV+  G     V + ++RD  MSA+EA
Sbjct: 124 IHQPASSFYEAQTGEFVLEAEELLKLRETLTRVYVQRTGNPLWVVSEDMERDVFMSATEA 183

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 184 QAHGIVDLV 192


>gi|297800408|ref|XP_002868088.1| hypothetical protein ARALYDRAFT_493172 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297313924|gb|EFH44347.1| hypothetical protein ARALYDRAFT_493172 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 305

 Score =  208 bits (529), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 79/215 (36%), Positives = 123/215 (57%), Gaps = 11/215 (5%)

Query: 11  SEDVFLGLVPMVVE---QTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           S     G+V MV+     +   +   D+ S L K RIV++   +   +  LI A+ L+L+
Sbjct: 79  SSKPKRGVVTMVIPFSKGSAHEQPPPDLASYLFKNRIVYLGMSLVPSVTELILAEFLYLQ 138

Query: 68  AENPQKEISLYINSPG--------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
            E+ +K I LYINS G        G  T   AIYD M ++KPPI T C+G A    +LLL
Sbjct: 139 YEDEEKPIYLYINSTGTTKNGEKLGYDTEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLL 198

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
           +AG KG R ALP++ I++ QP   F GQA+D+E   ++I  IK  + ++Y K+ GK+ E+
Sbjct: 199 TAGAKGNRSALPSSTIMIKQPIARFQGQATDVEIARKEIKHIKTEMVKLYSKHIGKSPEQ 258

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           +E  + R    S SEA ++G++DKV+ +    +++
Sbjct: 259 IEADMKRPKYFSPSEAVEYGIIDKVVYNERGSQDR 293


>gi|19698857|gb|AAL91164.1| unknown protein [Arabidopsis thaliana]
 gi|23197684|gb|AAN15369.1| unknown protein [Arabidopsis thaliana]
          Length = 305

 Score =  208 bits (529), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 78/215 (36%), Positives = 123/215 (57%), Gaps = 11/215 (5%)

Query: 11  SEDVFLGLVPMVVE---QTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           S     G+V MV+     +   +   D+ S L K RIV++   +   +  LI A+ L+L+
Sbjct: 79  SSKPKRGVVTMVIPFSKGSAHEQPPPDLASYLFKNRIVYLGMSLVPSVTELILAEFLYLQ 138

Query: 68  AENPQKEISLYINSPG--------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
            E+ +K I LYINS G        G  T   AIYD M ++KPPI T C+G A    +LLL
Sbjct: 139 YEDEKKPIYLYINSTGTTKNGEKLGYDTEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLL 198

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
           +AG KG R ALP++ I++ QP   F GQA+D+E   ++I  IK  + ++Y K+ GK+ E+
Sbjct: 199 TAGAKGNRSALPSSTIMIKQPIARFQGQATDVEIARKEIKHIKTEMVKLYSKHIGKSPEQ 258

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           +E  + R    S +EA ++G++DKV+ +    +++
Sbjct: 259 IEADMKRPKYFSPTEAVEYGIIDKVVYNERGSQDR 293


>gi|301353344|ref|YP_003795605.1| clp protease proteolytic subunit [Pteridium aquilinum subsp.
           aquilinum]
 gi|301016262|gb|ADK47549.1| clp protease proteolytic subunit [Pteridium aquilinum subsp.
           aquilinum]
          Length = 205

 Score =  208 bits (529), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 75/189 (39%), Positives = 119/189 (62%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGERSY--DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E +   D+Y+RL +ER++F+  Q++D +A  +   +++L  E+  K++ 
Sbjct: 5   VPKVPFRLPGEEDAVRVDVYNRLYRERLLFLGQQVDDEIANQLIGIMMYLNGEDQAKDMY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LY+NSPGG V AG++ YD MQF+ P + T CMG AASMGS +L+ GE   R ALP+AR++
Sbjct: 65  LYVNSPGGAVLAGISAYDAMQFVVPDVHTICMGLAASMGSSILAGGEITRRIALPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  + GQA +    A++  K++    ++Y +  GK    + + ++RD  +SA EA
Sbjct: 125 IHQPASSYYDGQAGECVMEAEEASKLRDCTTKVYAQRTGKPLWVISEDMERDVFLSAEEA 184

Query: 196 CDWGVVDKV 204
            D+GV D V
Sbjct: 185 QDYGVADPV 193


>gi|226494171|ref|NP_001140458.1| hypothetical protein LOC100272517 [Zea mays]
 gi|194699596|gb|ACF83882.1| unknown [Zea mays]
 gi|195624444|gb|ACG34052.1| ATP-dependent Clp protease proteolytic subunit 1 [Zea mays]
          Length = 289

 Score =  208 bits (529), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 83/173 (47%), Positives = 117/173 (67%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+   LL+ERIVF+  +IED +A  + +QLL L+A +P  +I L++NSPGG ++A MAIY
Sbjct: 76  DVMGLLLRERIVFLGNEIEDFLADAVVSQLLLLDAIDPDSDIRLFVNSPGGSLSATMAIY 135

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D MQ ++  +ST  MG A S  S++L  G KG RFA+PN RI++HQP GG SGQA D+E 
Sbjct: 136 DVMQLVRADVSTIGMGIAGSTASIILGGGTKGKRFAMPNTRIMIHQPVGGASGQALDVEV 195

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
            A++I+  KR +  I     G+T E+VEK +DRD  M   EA D+G++D V+ 
Sbjct: 196 QAKEILTNKRNVIRIVSGFTGRTPEQVEKDIDRDRYMGPLEAVDYGLIDGVID 248


>gi|86131298|ref|ZP_01049897.1| Clp protease [Dokdonia donghaensis MED134]
 gi|85818709|gb|EAQ39869.1| Clp protease [Dokdonia donghaensis MED134]
          Length = 182

 Score =  208 bits (529), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 90/170 (52%), Positives = 122/170 (71%), Gaps = 1/170 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I ++LL +R +F+ G ++D  A  +  +LL+L+A+    EI L+INSPGG VT+G A+YD
Sbjct: 11  IDNQLLNDRKIFLWGMVDDKSAKHVIDRLLYLDAQGHD-EIQLFINSPGGYVTSGFAMYD 69

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           T++ IK P+ST C G AASMGSLLLS GEKG RF  P+AR+++HQPSGG  GQASDIE  
Sbjct: 70  TIKMIKSPVSTICTGLAASMGSLLLSVGEKGRRFIQPHARVMIHQPSGGARGQASDIEIT 129

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           AQ+IVK K    +I   NCG+T++++ K   RDH M A E+ D+G+VD V
Sbjct: 130 AQEIVKTKELSAQILADNCGQTFDKIMKDFQRDHWMGADESVDYGIVDGV 179


>gi|68164829|ref|YP_247625.1| ATP-dependent Clp protease proteolytic subunit [Cucumis sativus]
 gi|67511424|emb|CAJ00784.1| ATP-dependent Clp protease proteolytic subunit [Cucumis sativus]
          Length = 195

 Score =  208 bits (529), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 68/189 (35%), Positives = 114/189 (60%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+RL ++R++F+   + + ++  I   +++L  E+  K+  
Sbjct: 5   VPKVPFRLPGEEDASWVDLYNRLYRQRLLFLGQDVNNEISNQIMGLMVYLSIEDGTKDQY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+ ++DTMQF+ P + T CMG AASMGS +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGSVIPGVGLFDTMQFVSPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVM 124

Query: 137 LHQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP+  FS G+  +    + +++ ++  + ++YV+  GK    + + ++RD  MSA EA
Sbjct: 125 IHQPASSFSKGKTGEFVLESTELLNLRETITKVYVQRTGKPLWVIPEDMERDVFMSAPEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGIVDLV 193


>gi|326509601|dbj|BAJ87016.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 296

 Score =  208 bits (529), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 83/180 (46%), Positives = 119/180 (66%)

Query: 27  NRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVV 86
             G  S D+   LL+ERI+F+  +IED +A  + +QLL L+A + + +I L++NSPGG +
Sbjct: 76  PGGVASGDVMGLLLRERIIFLGNEIEDFLADAVVSQLLLLDAMDSESDIRLFVNSPGGSL 135

Query: 87  TAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG 146
           +A MAIYD MQ ++  +ST  MG A S  S+LL  G KG RFA+PN RI++HQP GG SG
Sbjct: 136 SATMAIYDVMQLVRADVSTIGMGIAGSTASILLGGGAKGKRFAMPNTRIMMHQPVGGASG 195

Query: 147 QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           QA D+E  A++I+  KR +  +     G+T E+VEK +DRD  M   EA D+G++D V+ 
Sbjct: 196 QALDVEVQAKEILASKRNVIRLISGFTGRTLEQVEKDIDRDRYMGPLEAVDYGIIDGVID 255


>gi|297571129|ref|YP_003696903.1| endopeptidase Clp [Arcanobacterium haemolyticum DSM 20595]
 gi|296931476|gb|ADH92284.1| Endopeptidase Clp [Arcanobacterium haemolyticum DSM 20595]
          Length = 226

 Score =  208 bits (529), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 91/211 (43%), Positives = 136/211 (64%), Gaps = 3/211 (1%)

Query: 5   GCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLL 64
           G A     + +  ++P   E+T  G +  D Y++L ++RIVF+  Q++D  A  + AQLL
Sbjct: 15  GTAPMMPSNRY--ILPNFEERTPYGYKRQDPYAKLFEDRIVFLGVQVDDASADDVMAQLL 72

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
            LE+ +P+  I++YINSPGG  TA  AIYDTMQ+IKP I T C+GQAAS  ++LL+AG  
Sbjct: 73  VLESIDPESPITMYINSPGGSFTALTAIYDTMQYIKPQIQTVCLGQAASAAAVLLAAGAP 132

Query: 125 GMRFALPNARILLHQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
           G R ALPNAR+L+HQP+     GQASDI   A +I ++   L +    + G+  E ++K 
Sbjct: 133 GRRLALPNARVLIHQPAMEGVQGQASDIAIVADEIDRMNDWLIDTLAAHSGRDRELIKKD 192

Query: 184 LDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           + RD I++A +A ++G+VD+VL SR  +  +
Sbjct: 193 IARDKILTAQQAKEYGLVDQVLTSRKAVNPQ 223


>gi|166368460|ref|YP_001660733.1| ATP-dependent Clp protease-like protein [Microcystis aeruginosa
           NIES-843]
 gi|159028169|emb|CAO89776.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
 gi|166090833|dbj|BAG05541.1| ATP-dependent Clp protease proteolytic subunit [Microcystis
           aeruginosa NIES-843]
          Length = 228

 Score =  208 bits (529), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 77/199 (38%), Positives = 121/199 (60%), Gaps = 19/199 (9%)

Query: 34  DIYSRLLKERIVFVTGQ----------IEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           D+ S LLKERIV++             +   +  LI AQLL+L+ ++P+K I  YINS G
Sbjct: 24  DLESLLLKERIVYLGLPLFSSDDVKRNVGVDVTELIIAQLLYLQFDDPEKPIFFYINSTG 83

Query: 84  GV---------VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
                       T   AI DT+ +IKPP+ T C+GQA    +++LSAG KG R +LP+A 
Sbjct: 84  TSWYTGDAIGYETEAFAICDTLNYIKPPVHTICIGQAMGTAAMILSAGTKGFRASLPHAT 143

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I+L+Q   G  GQA+DI+  A++++  K+ + EI+ KN G+T E++ K +DR   ++  +
Sbjct: 144 IVLNQNRTGAQGQATDIQIRAKEVIANKQTMLEIFSKNTGQTTEKLAKDMDRTFYLTPQQ 203

Query: 195 ACDWGVVDKVLMSRIDIEE 213
           A D+G++D+VL SR ++ +
Sbjct: 204 AKDYGLIDRVLESRKELPK 222


>gi|67921361|ref|ZP_00514879.1| Peptidase S14, ClpP [Crocosphaera watsonii WH 8501]
 gi|67856473|gb|EAM51714.1| Peptidase S14, ClpP [Crocosphaera watsonii WH 8501]
          Length = 226

 Score =  208 bits (529), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 78/208 (37%), Positives = 123/208 (59%), Gaps = 19/208 (9%)

Query: 26  TNRGERSYDIYSRLLKERIVFVT----------GQIEDHMATLICAQLLFLEAENPQKEI 75
           TN      D+ S LLKERI+++            Q+   +  LI AQLL+L+ +NP+K I
Sbjct: 14  TNFRTPPPDLESLLLKERIIYLGLPLFSSDEIKQQVGIDVTQLIIAQLLYLQFDNPEKPI 73

Query: 76  SLYINSPGGV---------VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
             YINS G            T   AI DTM +IKPPI T C+GQA    +++LSAG KG 
Sbjct: 74  YFYINSTGTSWYTGDAIGFETEAFAICDTMNYIKPPIHTICIGQAMGTAAMILSAGTKGC 133

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           R +LP+A I+L+Q   G  GQA+DI+  A+++++ K+ +  I  +N G+T E++ K +DR
Sbjct: 134 RASLPHATIVLNQNRSGAQGQATDIQIRAKEVLQNKQTMLTILAENTGQTAEKIAKDIDR 193

Query: 187 DHIMSASEACDWGVVDKVLMSRIDIEEK 214
              ++ ++A ++G++D+VL S  ++ + 
Sbjct: 194 TFYLTPAKAKEYGLIDRVLESTKELPKA 221


>gi|257458199|ref|ZP_05623353.1| Clp protease [Treponema vincentii ATCC 35580]
 gi|257444493|gb|EEV19582.1| Clp protease [Treponema vincentii ATCC 35580]
          Length = 202

 Score =  207 bits (528), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 78/198 (39%), Positives = 124/198 (62%), Gaps = 4/198 (2%)

Query: 21  MVVEQTNRGERSYD----IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
              E+T++ + S +    +  + L  R + ++G++   +A  +  QLL LEA++  K I 
Sbjct: 5   YNAEETSKEKTSDNANDQLMQKFLNTRQIILSGEVNKELAEKVIRQLLILEADSASKPIY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YI+SPGG V AG AI+D ++FIKPP+ T  MG  AS G+L+L A  K  R  LPN+  L
Sbjct: 65  VYIDSPGGDVDAGFAIFDMIRFIKPPVYTVGMGLVASAGALILLAAPKNRRLGLPNSHYL 124

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP  G  G A+DIE HA++I KI+ ++N +  +  GK   +V K  DRD+ +SA EA 
Sbjct: 125 IHQPLSGIKGVATDIEIHAKEIEKIRAKINALIAEETGKDVADVAKDTDRDYWLSADEAV 184

Query: 197 DWGVVDKVLMSRIDIEEK 214
           ++G++ +V+ +R D+ +K
Sbjct: 185 NYGLILQVIKTRSDLPKK 202


>gi|332170082|gb|AEE19337.1| Endopeptidase Clp [Krokinobacter diaphorus 4H-3-7-5]
          Length = 178

 Score =  207 bits (528), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 90/170 (52%), Positives = 120/170 (70%), Gaps = 1/170 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I S+LL +R +F+ G ++D  A  +  +LL+L+A+    EI L+INSPGG VT+G A+YD
Sbjct: 7   IDSQLLDDRKIFLWGMVDDKSAKHVIDRLLYLDAQGH-GEIQLFINSPGGYVTSGFAMYD 65

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           T++ IK P+ST C G AASMGSLLLS GEKG RF  P+AR+++HQPSGG  GQASDIE  
Sbjct: 66  TIKMIKSPVSTICTGLAASMGSLLLSVGEKGRRFIQPHARVMIHQPSGGARGQASDIEIT 125

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           AQ+IVK K    +I   NCG+T+E++ K   RDH M A E+  +G+ D V
Sbjct: 126 AQEIVKTKELSAQILADNCGQTFEKIMKDFQRDHWMGAEESVAYGIADGV 175


>gi|122202884|sp|Q2QD64|CLPP_CUCSA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|74027125|gb|AAZ94675.1| ATP-dependent protease [Cucumis sativus]
 gi|115432828|gb|ABI97441.1| clp protease proteolytic subunit [Cucumis sativus]
 gi|115498328|gb|ABI98770.1| clp protease proteolytic subunit [Cucumis sativus]
          Length = 195

 Score =  207 bits (528), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 68/189 (35%), Positives = 114/189 (60%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+RL ++R++F+   + + ++  I   +++L  E+  K+  
Sbjct: 5   VPKVPFRLPGEEDASWVDLYNRLYRQRLLFLGQDVNNEISNQIMGLMVYLSIEDGTKDQY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+ ++DTMQF+ P + T C+G AASMGS +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGSVIPGVGLFDTMQFVSPDVHTICIGLAASMGSFILVGGEITKRLAFPHARVM 124

Query: 137 LHQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP+  FS G+  +    + +++ ++  + ++YV+  GK    + + L+RD  MSA EA
Sbjct: 125 IHQPASSFSKGKTGEFVLESTELLNLRETITKVYVQRTGKPLWVISEDLERDVFMSAPEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGIVDLV 193


>gi|302824555|ref|XP_002993920.1| hypothetical protein SELMODRAFT_137715 [Selaginella moellendorffii]
 gi|300138287|gb|EFJ05061.1| hypothetical protein SELMODRAFT_137715 [Selaginella moellendorffii]
          Length = 224

 Score =  207 bits (528), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 72/170 (42%), Positives = 112/170 (65%), Gaps = 1/170 (0%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           +RL +ER++F+   ++D +A  I   +++L  EN  K+I LYINSPGG V AG+++YD M
Sbjct: 43  NRLYRERLLFLGQNMDDEIANQIICIMMYLNGENRSKDIYLYINSPGGAVLAGISVYDMM 102

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIERHA 155
           QF+ P + T C+G AASMGS +L+ G    R ALP+AR+++HQP S  + GQA +    A
Sbjct: 103 QFVVPDVHTICVGLAASMGSFILTGGGITKRIALPHARVMIHQPASSFYEGQAGECLMEA 162

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           ++I+K++  +  IY +  GK    V + ++RD  MSA EA  +G++D V+
Sbjct: 163 EEILKLRDCITSIYARKTGKPLWVVSEDMERDVFMSAREARVYGIIDLVV 212


>gi|242910145|ref|YP_002970669.1| Clp protease proteolytic subunit [Alsophila spinulosa]
 gi|218454814|gb|ACK77151.1| Clp protease proteolytic subunit [Alsophila spinulosa]
          Length = 200

 Score =  207 bits (528), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 73/189 (38%), Positives = 117/189 (61%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+RL +ER+  +  Q++D +A  +   +++L  E+  K+  
Sbjct: 5   VPKVPFRLPGEEDAVWVDVYNRLYRERLPLLGQQVDDEIANQLIGIMMYLNGEDEAKDTY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LY+NSPGG V AG+++YD MQF+ P + T CMG AASMGS + + GE   R ALP+AR++
Sbjct: 65  LYVNSPGGAVLAGISVYDAMQFVVPDVHTICMGLAASMGSSISTGGEITRRIALPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  + GQA +    A++++K++  +  +Y +  GK    + + ++RD  +SA EA
Sbjct: 125 IHQPASSYYDGQAGECVMEAEEVLKLRDCITRVYAQRTGKPLWMISEDMERDVFLSAEEA 184

Query: 196 CDWGVVDKV 204
            D+GV D V
Sbjct: 185 QDYGVADPV 193


>gi|328880887|emb|CCA54126.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           venezuelae ATCC 10712]
          Length = 207

 Score =  207 bits (528), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 75/193 (38%), Positives = 121/193 (62%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T+ G R+ D YS+LL+ RIVF+   I++  A  + AQLL+L+   P ++I+L
Sbjct: 6   VLPAFTERTSYGTRTLDPYSKLLESRIVFLGTPIDETAANDVIAQLLYLDHAGPDQDIAL 65

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+A  AIYDTM  +   + T C+GQA S  ++LL+AG  G R  LP AR+ L
Sbjct: 66  YINSPGGSVSAMTAIYDTMGSLHCDLETTCLGQAMSTAAVLLAAGTPGKRMMLPGARVTL 125

Query: 138 HQPSG--GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
            +P+      GQ SD++  A+++++++  +  +   + G+  E ++  LDR  ++ A  A
Sbjct: 126 QEPAMDEPLRGQPSDLDLQAREMLRLRALMAGMLTAHTGRDRERIDADLDRLTVLDAPAA 185

Query: 196 CDWGVVDKVLMSR 208
             +G+VD V+ SR
Sbjct: 186 LAYGLVDHVITSR 198


>gi|224103437|ref|XP_002313056.1| predicted protein [Populus trichocarpa]
 gi|222849464|gb|EEE87011.1| predicted protein [Populus trichocarpa]
          Length = 246

 Score =  207 bits (527), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 73/191 (38%), Positives = 119/191 (62%), Gaps = 4/191 (2%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            ++P V+  T  G    D+ S L + RI+F+   I   +A  + +QL+ L   +   +I 
Sbjct: 58  PIMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSQVAQRVISQLVTLATIDENADIL 113

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+N PGG   + +AIYD M +IKP + T C G AAS G+LLL+ GEKGMR+A+PNARI+
Sbjct: 114 MYLNCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQGALLLAGGEKGMRYAMPNARIM 173

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  G   D+ R   + V+ + +++++Y    G+  E+V++  +RD  +S SEA 
Sbjct: 174 IHQPQGGCGGHVEDVRRQVNEAVQARHKIDQMYAVFTGQPLEKVQQYTERDRFLSTSEAM 233

Query: 197 DWGVVDKVLMS 207
           ++G++D +L +
Sbjct: 234 EFGLIDGILET 244


>gi|168050943|ref|XP_001777916.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162670676|gb|EDQ57240.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 201

 Score =  207 bits (527), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 79/199 (39%), Positives = 126/199 (63%), Gaps = 4/199 (2%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           + ++     ++P V+  T  G    D+ + + + RI+FV   +   +A  + ++LL L A
Sbjct: 5   RAAKKGAPPMMPAVL--TPSGP--VDLSTLMFRNRIIFVGSPVNSEVAQSVVSKLLTLAA 60

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
            N ++EI +YIN PGG   + MAIYD MQ+IKP +ST C G AAS G+LLL+ G+KG RF
Sbjct: 61  INDEEEIKMYINCPGGSTYSIMAIYDAMQWIKPDVSTVCFGIAASQGALLLAGGKKGKRF 120

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           A+PNARI++HQP GG  G A D+ R   +++  + +++++Y   C +  E V K  +RD+
Sbjct: 121 AMPNARIMIHQPQGGCGGTADDVRRQVNEVMSSRDKIDQMYSIFCNQPLERVRKFTERDY 180

Query: 189 IMSASEACDWGVVDKVLMS 207
             SA+EA D+G++D +L +
Sbjct: 181 FFSAAEAMDFGLIDGLLET 199


>gi|158311882|ref|YP_001504390.1| endopeptidase Clp [Frankia sp. EAN1pec]
 gi|158107287|gb|ABW09484.1| Endopeptidase Clp [Frankia sp. EAN1pec]
          Length = 205

 Score =  207 bits (527), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 78/162 (48%), Positives = 110/162 (67%)

Query: 46  FVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIST 105
           FV   ++D +A  +CAQLL L   + +++ISLYINSPGG V AGMAIYDTMQFI+  ++T
Sbjct: 34  FVGAAVDDALANRVCAQLLLLAQASRRQDISLYINSPGGSVDAGMAIYDTMQFIENDVAT 93

Query: 106 FCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRL 165
           + +G AASMG  LL+AG  G RFALPN+RI++HQP GG  G ASDI   A+  +  +RR+
Sbjct: 94  YALGLAASMGQFLLTAGTAGKRFALPNSRIMMHQPHGGVGGTASDIAIQAEQALHTRRRM 153

Query: 166 NEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
            E+  ++ G +  E+    DRD   +A+ A ++G+VD V+  
Sbjct: 154 QELIAEHSGHSVAEIAADSDRDRWFTAAAAKEYGLVDAVVEH 195


>gi|168064316|ref|XP_001784109.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162664360|gb|EDQ51083.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 230

 Score =  207 bits (527), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 76/174 (43%), Positives = 117/174 (67%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+   +LK+RIVF+  Q++D +A  I +QLL L+A +P KEI L++N PGG ++A MAI+
Sbjct: 14  DVMGLMLKQRIVFLGHQMDDFVADAIVSQLLLLDAVDPNKEIRLFVNCPGGSISAAMAIF 73

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D +Q  +  +ST C G AAS  +++L+ G  G R A+PN+RI++HQP GG SGQA D+E 
Sbjct: 74  DAIQLCRADVSTICFGLAASTAAIVLAGGTPGKRLAMPNSRIMMHQPLGGASGQAIDVEI 133

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
            A++++  K  +  I  +  G+  E+VEK +DRD  MS  EA ++G++D V+  
Sbjct: 134 QAKEVMYHKSNVTRILSEITGRAPEQVEKDIDRDRYMSPIEAMEYGIIDGVIDK 187


>gi|122894015|ref|YP_001004211.1| clp protease proteolytic subunit [Ranunculus macranthus]
 gi|160380563|sp|A1XGR3|CLPP_RANMC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|85540829|gb|ABC70781.1| clp protease proteolytic subunit [Ranunculus macranthus]
          Length = 201

 Score =  207 bits (527), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 73/189 (38%), Positives = 114/189 (60%), Gaps = 4/189 (2%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y RL +ER++F+   ++  ++  +   +++L  E+  +++ 
Sbjct: 5   VPKVPFRIPGEEDAVWVDVY-RLHRERLLFLGQGVDSEISNQLIGLMVYLSLEDETRDLF 63

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYDTMQF+ P + T CMG AASMGS LL  GE   R A P+AR++
Sbjct: 64  LFINSPGGWVVPGVAIYDTMQFVPPDVHTICMGLAASMGSFLLVGGEITKRIAFPHARVM 123

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  L  +YV+  G     V + ++RD  MSA+EA
Sbjct: 124 IHQPASSFYEAQTGEFVLEAEELLKLRETLTRVYVQRTGNPLWVVSEDMERDVFMSATEA 183

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 184 QAHGIVDFV 192


>gi|227488327|ref|ZP_03918643.1| endopeptidase Clp [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227091737|gb|EEI27049.1| endopeptidase Clp [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 207

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 85/193 (44%), Positives = 134/193 (69%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE ++ G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE  +P ++I++
Sbjct: 12  ILPSFVEHSSYGAKESNPYNKLFEERIIFLGAQVDDTSANDIMAQLLVLEGLDPDRDITM 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++P + T C+GQAAS  ++LL+AG KG R ALPNAR+L+
Sbjct: 72  YINSPGGSFTSLMAIYDTMQYVRPDVRTVCLGQAASAAAVLLAAGAKGKRAALPNARVLI 131

Query: 138 HQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+     GQ SD+E  A++I ++++ + +    + G+T E+V    DRD I++A EA 
Sbjct: 132 HQPATQGTQGQVSDLEIQAREIERMRKLMEDTLAHHTGQTSEQVRIDTDRDKILTAQEAV 191

Query: 197 DWGVVDKVLMSRI 209
           ++G++D+V   R 
Sbjct: 192 EYGLIDEVFDYRK 204


>gi|225470285|ref|XP_002266380.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|147794105|emb|CAN62361.1| hypothetical protein VITISV_031921 [Vitis vinifera]
 gi|297742668|emb|CBI34817.3| unnamed protein product [Vitis vinifera]
          Length = 291

 Score =  207 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 68/203 (33%), Positives = 118/203 (58%), Gaps = 4/203 (1%)

Query: 7   AKKDSEDVFLGLV--PMVVEQTNR--GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQ 62
           +K     V +  +  P V  +T      +  D+++ L +ER++++   I++  +  + A 
Sbjct: 70  SKSTRARVRMMPIGTPRVPYRTPGEGTWQWVDLWNALYRERVIYIGQHIDEEFSNQLLAT 129

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           +L+L++    K +  YINSPGG +T  +AIYDTMQ +K P+ T C+G A ++ + LL+AG
Sbjct: 130 MLYLDSIESSKRMFFYINSPGGDLTPSLAIYDTMQSLKSPVGTNCLGFAYNLATFLLAAG 189

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
           EKG R A+P +RI L  P+G   GQA DI   A ++++I+  L        G+  +++ K
Sbjct: 190 EKGNRLAMPLSRIALQSPAGAARGQADDIRNEANELLRIRDYLFSELANKTGQPIDKINK 249

Query: 183 TLDRDHIMSASEACDWGVVDKVL 205
            L R    +A EA ++G++D++L
Sbjct: 250 DLRRMKRFNAQEALEYGLIDRIL 272


>gi|69214839|gb|AAZ03802.1| ATP-depedent Clp protease proteolytic subunit [Ranunculus
           macranthus]
          Length = 195

 Score =  207 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 71/188 (37%), Positives = 114/188 (60%), Gaps = 2/188 (1%)

Query: 19  VPMVVEQTNRGERSYDIY-SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           VP V  +    E +  +  +RL +ER++F+   ++  ++  +   +++L  E+  +++ L
Sbjct: 5   VPKVPFRIPGEEDAVWVDVNRLHRERLLFLGQGVDSEISNQLIGLMVYLSLEDETRDLFL 64

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           +INSPGG V  G+AIYDTMQF+ P + T CMG AASMGS LL  GE   R A P+AR+++
Sbjct: 65  FINSPGGWVVPGVAIYDTMQFVPPDVHTICMGLAASMGSFLLVGGEITKRIAFPHARVMI 124

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP S  +  Q  +    A++++K++  L  +YV+  G     V + ++RD  MSA+EA 
Sbjct: 125 HQPASSFYEAQTGEFVLEAEELLKLRETLTRVYVQRTGNPLWVVSEDMERDVFMSATEAQ 184

Query: 197 DWGVVDKV 204
             G+VD V
Sbjct: 185 AHGIVDFV 192


>gi|308235224|ref|ZP_07665961.1| ATP-dependent Clp protease proteolytic subunit [Gardnerella
           vaginalis ATCC 14018]
 gi|311114525|ref|YP_003985746.1| endopeptidase Clp [Gardnerella vaginalis ATCC 14019]
 gi|310946019|gb|ADP38723.1| endopeptidase Clp [Gardnerella vaginalis ATCC 14019]
          Length = 222

 Score =  207 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 84/192 (43%), Positives = 134/192 (69%), Gaps = 1/192 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   EQT  G ++ D Y++L ++RI+F+  Q++D  A  I AQLL LE+ +P +++ +
Sbjct: 30  VLPQFGEQTPYGMKTQDPYTKLFEDRIIFMGVQVDDTSADDIMAQLLVLESMDPNRDVMM 89

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL+AG  G R  LPNAR+L+
Sbjct: 90  YINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLAAGSAGKRMILPNARVLI 149

Query: 138 HQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+ G   G+A++IE  A+++++++  L     K+ G+  E + K ++ D I++A +A 
Sbjct: 150 HQPAMGQDFGKATEIELQAKEMLRLREWLESTLAKHTGQDIERIRKDIEVDTILTAPQAK 209

Query: 197 DWGVVDKVLMSR 208
           ++G+VD+VL  R
Sbjct: 210 EYGMVDEVLEHR 221


>gi|313199614|ref|YP_004021229.1| clp protease proteolytic subunit [Isoetes flaccida]
 gi|291575343|gb|ADE18056.1| clp protease proteolytic subunit [Isoetes flaccida]
          Length = 205

 Score =  207 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 73/174 (41%), Positives = 116/174 (66%), Gaps = 1/174 (0%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
             D+++RL +ER++F+   I+D +A      L++L  E+  K+I LYINSPGG V AG++
Sbjct: 20  WIDVHNRLYRERLLFLGQHIDDEIANQTICILMYLNGEDQSKDIYLYINSPGGAVLAGIS 79

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASD 150
           +YD MQ+I P ++T C+G AASMGS +L+ GE   R ALP+AR+++HQP S  + GQA +
Sbjct: 80  VYDIMQYIIPNVNTICVGLAASMGSFILAGGEITKRIALPHARVMIHQPGSSFYDGQAGE 139

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
               A++++K++  + +IYV+  GK    V + ++RD  MSA EA  +G+ D +
Sbjct: 140 CLVEAEEMLKLRDCVTKIYVQRTGKPLWVVSEDMERDVFMSAEEAKVYGITDPI 193


>gi|302143493|emb|CBI22054.3| unnamed protein product [Vitis vinifera]
          Length = 212

 Score =  206 bits (525), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 81/169 (47%), Positives = 119/169 (70%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           LLKERIVF+   ++D +A  I +QLL L+A++P K+I L+INSPGG ++A MAIYD +Q 
Sbjct: 4   LLKERIVFLGNNVDDFVADAIISQLLLLDAQDPTKDIRLFINSPGGSLSATMAIYDIVQL 63

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           ++  +ST  +G +AS  S++L  G KG RFA+PN RI++HQP GG SGQA D+E  AQ+I
Sbjct: 64  VRADVSTVALGISASTASIILGGGTKGKRFAMPNTRIMIHQPLGGASGQAIDVEIQAQEI 123

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           +  K  + +I     G+++E+VEK +DRD  MS  EA ++G++D V+  
Sbjct: 124 MHNKSNVTKIIAGFSGRSFEQVEKDIDRDRYMSPIEAVEYGIIDAVIDR 172


>gi|168036513|ref|XP_001770751.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162677969|gb|EDQ64433.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 195

 Score =  206 bits (525), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 78/191 (40%), Positives = 123/191 (64%), Gaps = 4/191 (2%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            ++P V+  T  G    D+ + + + RI+FV   +   +A  + ++LL L A N ++EI 
Sbjct: 7   PMMPAVL--TPSGP--VDLSTLMFRNRIIFVGSSVNSEVAQSVISKLLTLAAINDEEEIK 62

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YIN PGG   + MAI+D MQ+IKP +ST C G AAS G+LLL+ G+KG RFA+PNARI+
Sbjct: 63  MYINCPGGSTYSIMAIFDAMQWIKPDVSTVCFGIAASQGALLLAGGKKGKRFAMPNARIM 122

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  G A D+ R   +++  + +++++Y   C +  E V K  +RD+  SA+EA 
Sbjct: 123 IHQPQGGCGGTADDVRRQVNEVMSSRDKIDKMYSTFCNQPLERVRKFTERDYFFSAAEAL 182

Query: 197 DWGVVDKVLMS 207
           D+G++D +L +
Sbjct: 183 DFGLIDGLLET 193


>gi|119512062|ref|ZP_01631156.1| ATP-dependent Clp protease proteolytic subunit [Nodularia spumigena
           CCY9414]
 gi|119463288|gb|EAW44231.1| ATP-dependent Clp protease proteolytic subunit [Nodularia spumigena
           CCY9414]
          Length = 220

 Score =  206 bits (525), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 76/183 (41%), Positives = 115/183 (62%), Gaps = 9/183 (4%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS---------PGG 84
           D+ S L+KERIV++   +   +  LI A+LL+L++++P+K I +YINS         P G
Sbjct: 25  DLPSLLMKERIVYLGMPLVPAVTELIIAELLYLQSDDPEKPIKIYINSTGTSGYSGEPIG 84

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
             T   AIYDTM++IKPPI T C+G A  M ++LLSAG KG R +LP++ I+LHQP    
Sbjct: 85  FETEAFAIYDTMKYIKPPIHTICIGSAMGMAAMLLSAGTKGCRASLPHSSIILHQPKSYA 144

Query: 145 SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            GQA+DI+  A++++  K  L +I     G+  E++ K +DR   M+  EA D+G++D+V
Sbjct: 145 QGQATDIQIRAREVLINKASLVDILGHTTGQAPEKITKDMDRLLYMTPYEARDYGLIDRV 204

Query: 205 LMS 207
              
Sbjct: 205 FEK 207


>gi|156598329|gb|ABU85425.1| clp protease proteolytic subunit [Musa acuminata]
          Length = 195

 Score =  206 bits (525), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 70/188 (37%), Positives = 117/188 (62%), Gaps = 2/188 (1%)

Query: 19  VPMVVEQTNRGERSYDIY-SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           VP V  ++   E +  +  +RL +ER++F+  ++   ++  I   +++L  E+  +++ L
Sbjct: 5   VPKVPFRSPGEEDAVWVDLNRLHRERLLFLGQEVNSEISNQIVGLMVYLSIEDNTRDLFL 64

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           +INSPGG V +G+AIYDTMQF+ P + T CMG AASMGS +L  GE   R A P+AR+++
Sbjct: 65  FINSPGGWVVSGIAIYDTMQFVPPDVHTICMGLAASMGSFILIGGEITKRLAFPHARVMI 124

Query: 138 HQPSGGFSGQAS-DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+  F    + +     ++++K++  L ++YV+  GK    V + ++RD  MSA+EA 
Sbjct: 125 HQPASSFYESRTGEFVLEMEELLKLRETLTKVYVQRTGKPLWVVSEDMERDVFMSATEAQ 184

Query: 197 DWGVVDKV 204
             G+VD V
Sbjct: 185 AHGIVDLV 192


>gi|226968697|ref|YP_002808657.1| protease subunit of the ATP-dependent Clp endopeptidase [Micromonas
           sp. RCC299]
 gi|226431175|gb|ACO55581.1| protease subunit of the ATP-dependent Clp endopeptidase [Micromonas
           sp. RCC299]
          Length = 200

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 73/188 (38%), Positives = 123/188 (65%), Gaps = 2/188 (1%)

Query: 19  VPMVVEQTNRG--ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +       +  D+Y+RL +ER++F+   ++D +A  +   +L+L AE+ Q+ + 
Sbjct: 5   VPKVAYRLPGEAVPQWVDLYNRLYRERVLFLGSALDDELANQLNGIMLYLSAEDSQRRLF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAG++++D M ++   ++T  +G AASM S +L+ GE+G R ALP+ RI+
Sbjct: 65  LYINSPGGSVTAGLSVFDIMNYVDAAVTTIGIGFAASMASFILAGGERGARLALPHCRIM 124

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQAS+I     +I+++++ +  +YV   G++   + + LDRD  +SA +A 
Sbjct: 125 IHQPQGGMEGQASEIVLEKDEIIRLRKLIGRLYVDLTGQSAATIARDLDRDKFLSARDAR 184

Query: 197 DWGVVDKV 204
           ++G+VD V
Sbjct: 185 EYGLVDLV 192


>gi|225544148|ref|YP_002720137.1| clpP [Jatropha curcas]
 gi|224979589|gb|ACN72716.1| clpP [Jatropha curcas]
          Length = 195

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 72/188 (38%), Positives = 116/188 (61%), Gaps = 2/188 (1%)

Query: 19  VPMVVEQTNRGERSYDIY-SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           VP V  +    + S  I  +RL +ER++F+   ++  ++  +   +++L  E+  K++ L
Sbjct: 5   VPKVPFRNPGEDDSIWIDVNRLYRERLLFLGQDVDSEISNQLIGLMVYLSIESETKDLYL 64

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           +INSPGG V  G+AIYDTMQF++P + T CMG AASMGS +L  G+   R A P+AR+++
Sbjct: 65  FINSPGGWVIPGIAIYDTMQFVRPDVQTVCMGLAASMGSFILVGGKITKRLAFPHARVMI 124

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP +G +  Q  +    A++++K++  L  IY +  GK    V + ++RD  MSA+EA 
Sbjct: 125 HQPIAGFYEAQIVEFVLEAEELLKLREILTRIYAQRTGKPLWIVSEDMERDVFMSATEAQ 184

Query: 197 DWGVVDKV 204
             G+VD V
Sbjct: 185 AHGIVDLV 192


>gi|2827888|gb|AAB99906.1| ATP-dependent Clp protease proteolytic subunit [Arabidopsis
           thaliana]
          Length = 271

 Score =  205 bits (523), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 66/191 (34%), Positives = 116/191 (60%), Gaps = 4/191 (2%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            ++P V+  T  G    D+ S L + RI+F+   I   +A  + +QL+ L + + + +I 
Sbjct: 83  PVMPSVM--TPGGP--LDLSSVLFRNRIIFIGQPINAQVAQRVISQLVTLASIDDKSDIL 138

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+N PGG   + + IYD M +IKP + T   G AAS G+  L+ GEKGMR+A+PN R++
Sbjct: 139 MYLNCPGGSTYSVLTIYDCMSWIKPKVGTVAFGVAASQGAFFLAGGEKGMRYAMPNTRVM 198

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP  G  G   D+ R   + ++ +++++ +Y    G+  E+V++  +RD  +SASEA 
Sbjct: 199 IHQPQTGCGGHVEDVRRQVNEAIEARQKIDRMYAAFTGQPLEKVQQYTERDRFLSASEAF 258

Query: 197 DWGVVDKVLMS 207
           ++G++D +L +
Sbjct: 259 EFGLIDGLLET 269


>gi|302561916|ref|ZP_07314258.1| Clp protease [Streptomyces griseoflavus Tu4000]
 gi|302479534|gb|EFL42627.1| Clp protease [Streptomyces griseoflavus Tu4000]
          Length = 211

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 75/200 (37%), Positives = 126/200 (63%), Gaps = 2/200 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G+R+ D Y++LL+ERIV +  +I++  A  + AQ ++LE   P ++ISL
Sbjct: 9   VLPEFTERTMSGQRTMDPYAKLLQERIVILGTRIDETSANDVMAQFMYLEHHAPDQDISL 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG   A  AI+DT++++   + T C+GQA    +LLL+AG  G R  LP +R++L
Sbjct: 69  YINSPGGSFHAMSAIHDTLRYVTCDVETVCLGQAEGAAALLLAAGTPGKRLVLPGSRLVL 128

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
            QP       GQ SD+   A+++ +I+ R+ E+ V++ G+T E+V   ++RD ++ A  A
Sbjct: 129 RQPVLLEPVEGQTSDLAIQAEELNRIRARMEEMLVRHTGRTAEQVRADIERDTVLDAGAA 188

Query: 196 CDWGVVDKVLMSRIDIEEKS 215
            ++G+ D+V+  R  +   S
Sbjct: 189 VEYGLADRVVPHRRSLPPAS 208


>gi|5360593|dbj|BAA82068.1| nClpP4 [Arabidopsis thaliana]
          Length = 299

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 84/183 (45%), Positives = 124/183 (67%), Gaps = 1/183 (0%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           E   RG  S D+   LL+ERIVF+   I+D +A  I +QLL L+A++P+K+I L+INSPG
Sbjct: 77  ESAIRGAES-DVMGLLLRERIVFLGSSIDDFVADAIMSQLLLLDAKDPKKDIKLFINSPG 135

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           G ++A MAIYD +Q ++  +ST  +G AAS  S++L AG KG RFA+PN RI++HQP GG
Sbjct: 136 GSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGAGTKGKRFAMPNTRIMIHQPLGG 195

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            SGQA D+E  A++++  K  +  I      +++E+V K +DRD  MS  EA ++G++D 
Sbjct: 196 ASGQAIDVEIQAKEVMHNKNNVTSIIAGCTSRSFEQVLKDIDRDRYMSPIEAVEYGLIDG 255

Query: 204 VLM 206
           V+ 
Sbjct: 256 VID 258


>gi|156598137|gb|ABU85333.1| clp protease proteolytic subunit [Elaeis oleifera]
          Length = 195

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 70/188 (37%), Positives = 118/188 (62%), Gaps = 2/188 (1%)

Query: 19  VPMVVEQTNRGERSYDIY-SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +P V  ++   E +  +  +RL +E ++F+  +++  ++  +   +++L  E+  +++ L
Sbjct: 5   IPKVPFRSPGEEDAIWVDVNRLHREGLLFLGQEVDSEISNQLVGLMVYLSIEDDTRDLYL 64

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           +INSPGG V  G+AIYDTMQF+ P + T CMG AASMGS +L  GE   R ALP+AR+++
Sbjct: 65  FINSPGGWVIPGIAIYDTMQFVPPDVHTICMGLAASMGSFILVGGEITKRLALPHARVMI 124

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP S  +  QA +    A++++K++  L ++YV+  G     V + ++RD  MSA+EA 
Sbjct: 125 HQPASSFYEAQAGEFILEAEELLKLRETLTKVYVQRTGNPLWVVSEDMERDVFMSATEAQ 184

Query: 197 DWGVVDKV 204
             G+VD V
Sbjct: 185 VHGIVDLV 192


>gi|139389975|ref|YP_001123575.1| ATP-dependent protease subunit [Draba nemorosa]
 gi|160380553|sp|A4QL44|CLPP_DRANE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|134286777|dbj|BAF50399.1| ATP-dependent protease subunit [Draba nemorosa]
          Length = 196

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 72/189 (38%), Positives = 114/189 (60%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNR--GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++         DIY+RL +ER+ F+  +++  ++  + + +++L  E   K++ 
Sbjct: 5   VPKVPFRSPGEGDTSWVDIYNRLYRERLFFLGQEVDTEISNQLISLMIYLSIEKDTKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V +GMAIYDTMQF++P + T CMG AAS+ S +L  G    R A P+AR++
Sbjct: 65  LFINSPGGWVISGMAIYDTMQFVRPDVQTICMGLAASIASFILVGGAITKRIAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++KI+  +  +YV+  GK    V + + RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQTGEFILEAEELIKIRETITRVYVQRTGKPIWVVSEDMKRDVFMSATEA 184

Query: 196 CDWGVVDKV 204
              G VD V
Sbjct: 185 QAHGNVDLV 193


>gi|229139426|ref|ZP_04267997.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           BDRD-ST26]
 gi|228643973|gb|EEL00234.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           BDRD-ST26]
          Length = 164

 Score =  205 bits (522), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 92/164 (56%), Positives = 120/164 (73%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P VVEQT  GERSYDIYSRLLK+RI+ +  +I D +A+ + AQLLFLEAE+ +K+I
Sbjct: 1   MNAIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG  TAG AI DTM  IKP + T CMG AAS G+LLL +G KG RFALPN+ I
Sbjct: 61  FLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
           ++HQP GG  GQA++IE  A+ I+K+K  +N++  +  G   +E
Sbjct: 121 MIHQPLGGAKGQATEIEITAKRILKLKHDINKMIAEKQGNRLKE 164


>gi|313183847|ref|YP_004021690.1| clp protease proteolytic subunit [Prunus persica]
 gi|309321459|gb|ADO65000.1| clp protease proteolytic subunit [Prunus persica]
          Length = 195

 Score =  205 bits (522), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 73/191 (38%), Positives = 115/191 (60%), Gaps = 4/191 (2%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     D+Y RL +ER++F+   ++  ++  +   +++L  E+  K++ 
Sbjct: 5   VPRVPFRSPGEEDALWIDVY-RLYRERLLFLGQGVDSEISNQLIGLMVYLSIEDDTKDLY 63

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYDTMQF++P I T CMG AASMGS +L  GE   R A P+AR++
Sbjct: 64  LFINSPGGWVIPGVAIYDTMQFVRPDIQTICMGLAASMGSFILVGGEITKRLAFPHARVM 123

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP +  +  Q  +    A++++K++  L  +Y +  GK    V + ++RD  MSA EA
Sbjct: 124 IHQPAASFYEAQTGEFILEAEELLKLRETLTRVYAQRTGKPLWVVSEDMERDVFMSAIEA 183

Query: 196 CDWGVVDKVLM 206
              G+VD V  
Sbjct: 184 QAHGIVDLVAT 194


>gi|284929272|ref|YP_003421794.1| protease subunit of ATP-dependent protease [cyanobacterium UCYN-A]
 gi|284809716|gb|ADB95413.1| protease subunit of ATP-dependent protease [cyanobacterium UCYN-A]
          Length = 226

 Score =  205 bits (522), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 74/201 (36%), Positives = 118/201 (58%), Gaps = 19/201 (9%)

Query: 34  DIYSRLLKERIVFVT----------GQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           D+ S LLKERI+++            Q+   +  LI AQLL+L+ +NP K I  YINS G
Sbjct: 22  DLESLLLKERIIYLGLPLFSSDEVKQQVGIDVTQLIIAQLLYLQFDNPDKPIFFYINSTG 81

Query: 84  GV---------VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
                       T   AI DTM ++KPPI T C+GQA    +++LSAG KG R +LP+A 
Sbjct: 82  TSWHTGDAVGFETEAFAICDTMNYVKPPIHTICIGQAMGTAAMILSAGTKGCRASLPHAT 141

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I+L+Q   G  GQA+DI+  A++++  K  + +I  KN G+  +++ K +DR   ++  +
Sbjct: 142 IVLNQNRSGAQGQATDIQIRAKEVLSNKSTMLQILSKNTGQAVDKISKDIDRTFYLTPEK 201

Query: 195 ACDWGVVDKVLMSRIDIEEKS 215
           A ++G++D+VL S  ++ + +
Sbjct: 202 AKEYGLIDRVLESTKELPKSA 222


>gi|218192668|gb|EEC75095.1| hypothetical protein OsI_11253 [Oryza sativa Indica Group]
          Length = 464

 Score =  205 bits (522), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 67/136 (49%), Positives = 99/136 (72%)

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            ++I +Y+NSPGG VTAGMAI+DTM+ I+P +ST C+G AASMG+ LLSAG KG R++LP
Sbjct: 317 TEDIIMYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCIGLAASMGAFLLSAGTKGKRYSLP 376

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+RI++HQP GG  GQ +D+E  A +++  K  LN     + G+  +++    DRD+ MS
Sbjct: 377 NSRIMIHQPLGGAQGQETDLEIQANEMLHHKANLNGYLAYHTGQPLDKINVDTDRDYFMS 436

Query: 192 ASEACDWGVVDKVLMS 207
           A EA ++G++D V+M+
Sbjct: 437 AKEAKEYGLIDGVIMN 452


>gi|224126447|ref|XP_002329556.1| predicted protein [Populus trichocarpa]
 gi|118483146|gb|ABK93479.1| unknown [Populus trichocarpa]
 gi|222870265|gb|EEF07396.1| predicted protein [Populus trichocarpa]
          Length = 310

 Score =  205 bits (522), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 77/217 (35%), Positives = 120/217 (55%), Gaps = 9/217 (4%)

Query: 6   CAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF 65
            + K    V   ++P     +   +   D+ S L K RIV++   +   +  LI A+ L+
Sbjct: 83  SSSKGKRSVVTMVIPY-TRGSAWEQPPPDLASYLFKNRIVYLGMSLVPSVTELILAEFLY 141

Query: 66  LEAENPQKEISLYINSPG--------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSL 117
           L+ E+ +K I LYINS G        G  T   AIYD M ++KPPI T C+G A    +L
Sbjct: 142 LQYEDEEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAAL 201

Query: 118 LLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTY 177
           LL+AG +G R ALP++ I++ QP G F GQA+D+E   ++I  +K  L  +  K+ GK  
Sbjct: 202 LLAAGSRGNRSALPSSTIMMKQPIGRFQGQATDVELARKEIKNVKTELVNLLAKHIGKLP 261

Query: 178 EEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           EE+E  + R    S +EA ++G++DKV+ +    E++
Sbjct: 262 EEIEADISRPKYFSPTEAVEYGIIDKVIYNERTTEDR 298


>gi|227542941|ref|ZP_03972990.1| endopeptidase Clp [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227181163|gb|EEI62135.1| endopeptidase Clp [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 207

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 85/193 (44%), Positives = 134/193 (69%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE ++ G +  + Y++L +ERI+F+  Q++D  A  I AQLL LE  +P ++I++
Sbjct: 12  ILPSFVEHSSYGAKESNPYNKLFEERIIFLGAQVDDTSANDIMAQLLVLEGLDPDRDITM 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG  T+ MAIYDTMQ+++P + T C+GQAAS  ++LL+AG KG R ALPNAR+L+
Sbjct: 72  YINSPGGSFTSLMAIYDTMQYVRPDVRTVCLGQAASAAAVLLAAGAKGKRAALPNARVLI 131

Query: 138 HQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+     GQ SD+E  A++I ++++ + +    + G+T E+V    DRD I++A EA 
Sbjct: 132 HQPATQGTQGQVSDLEIQAREIERMRKLMEDTLAHHTGQTSEQVRIDTDRDKILTAPEAV 191

Query: 197 DWGVVDKVLMSRI 209
           ++G++D+V   R 
Sbjct: 192 EYGLIDEVFDYRK 204


>gi|91209012|ref|YP_538874.1| ATP-dependent Clp protease proteolytic subunit [Solanum
           bulbocastanum]
 gi|108773154|ref|YP_635664.1| ATP-dependent Clp protease proteolytic subunit [Solanum tuberosum]
 gi|122196329|sp|Q27S24|CLPP_SOLTU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|122201813|sp|Q2MIG3|CLPP_SOLBU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|84371919|gb|ABC56237.1| clp protease proteolytic subunit [Solanum bulbocastanum]
 gi|88656828|gb|ABD47081.1| clp protease proteolytic subunit [Solanum tuberosum]
          Length = 198

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 71/189 (37%), Positives = 117/189 (61%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGE--RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V+ +          D+Y+RL +ER++F+   I   ++  +   +++L  E+  KE+ 
Sbjct: 5   VPKVLFRNPGDPISSWVDVYNRLYRERLLFLGQGISTDLSNQLIGLMMYLSMEDENKELY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L++NSPGG V  G+AIYDTMQF++P I T C+G AASMGS +L+ G+   R A P+AR++
Sbjct: 65  LFVNSPGGWVIPGIAIYDTMQFVRPDIHTICIGLAASMGSFILAGGQLTKRIAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +H+P S  +  Q  +    A +++K++  L  +Y +  GK +  V + ++RD  MSA+EA
Sbjct: 125 IHEPYSAFYMAQVGEFVMEAVELMKLRETLTRVYAERTGKPFWVVHEDMERDIFMSATEA 184

Query: 196 CDWGVVDKV 204
             +G+VD V
Sbjct: 185 QAYGIVDFV 193


>gi|300741667|ref|ZP_07071688.1| Clp protease [Rothia dentocariosa M567]
 gi|300380852|gb|EFJ77414.1| Clp protease [Rothia dentocariosa M567]
          Length = 212

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 88/189 (46%), Positives = 120/189 (63%), Gaps = 1/189 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
            P +       +  Y +Y+RLLKERI+++  ++ D  A LIC+Q+L L AE+P+ +I LY
Sbjct: 15  TPTMATNPASAQEDY-VYNRLLKERIIWLGSEVRDSNANLICSQMLVLSAEDPKADIYLY 73

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG VTAG+AIYDTMQ I   + T   G AASMG LLL+AG  G R+A PNARIL+H
Sbjct: 74  INSPGGSVTAGLAIYDTMQLIPNDVVTVATGMAASMGQLLLTAGAPGKRYATPNARILMH 133

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP GG  G  SDI    Q  +  KRRL EI  +  GK+ +++ +  DRD+  +A E  ++
Sbjct: 134 QPLGGIGGSGSDIRTQVQLTLDFKRRLAEITAERTGKSVDQIIEDSDRDNWFTAEEGLEY 193

Query: 199 GVVDKVLMS 207
           G  D +  +
Sbjct: 194 GFFDHIATT 202


>gi|223931051|ref|YP_002586911.1| clp protease proteolytic subunit [Syntrichia ruralis]
 gi|219562265|gb|ACL27596.1| clp protease proteolytic subunit [Syntrichia ruralis]
          Length = 197

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 75/188 (39%), Positives = 120/188 (63%), Gaps = 2/188 (1%)

Query: 19  VPMVVEQTNRGERSYDIY-SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           VP V  +    E +  I  +RL +ER++F+   ++D +A  +   +++L  E+  K++ L
Sbjct: 5   VPKVPFRLPGEEDAVWIDVNRLYRERLLFLGQHVDDEIANQLIGIMMYLNGEDESKDMYL 64

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+++YD MQF+ P + T CMG AASMGS +L+ GE   R ALP+AR+++
Sbjct: 65  YINSPGGAVLAGISVYDAMQFVVPDVHTICMGLAASMGSFILTGGEITKRIALPHARVMI 124

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP S  + GQA +    A++++K++  +  +YV+  GK    + + ++RD  MSA EA 
Sbjct: 125 HQPASSYYDGQAGECMMEAEEVLKLRDYITRVYVQRIGKPLWLISEDMERDVFMSAKEAK 184

Query: 197 DWGVVDKV 204
            +G+VD V
Sbjct: 185 TYGIVDAV 192


>gi|302771047|ref|XP_002968942.1| hypothetical protein SELMODRAFT_90346 [Selaginella moellendorffii]
 gi|300163447|gb|EFJ30058.1| hypothetical protein SELMODRAFT_90346 [Selaginella moellendorffii]
          Length = 195

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 75/191 (39%), Positives = 121/191 (63%), Gaps = 4/191 (2%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            + P V+  T  G    D+ S +L+ RI+F+   I   +A  + +QL+ L A + +K+I 
Sbjct: 7   PMAPAVI--TPAGI--ADLTSIMLRSRIIFIGQPINSQVAQRVISQLVMLAAIDEEKDIQ 62

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYIN PGG   + +AIYD M +IKP +ST C G AAS G+L+L+ G KG+RFA+PN+R++
Sbjct: 63  LYINCPGGSTYSVLAIYDCMSWIKPRVSTVCFGMAASQGALILAGGTKGLRFAMPNSRVM 122

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  G   D+ R   ++V  + +++++Y    G+  E V+   +RDH  SA+EA 
Sbjct: 123 IHQPQGGCGGTMEDVRRQVNEVVASRDKIDKMYAAFTGQPLEIVQTYTERDHFFSAAEAM 182

Query: 197 DWGVVDKVLMS 207
           ++G++D +L +
Sbjct: 183 EFGLIDGLLET 193


>gi|149371988|ref|ZP_01891307.1| ATP-dependent Clp protease proteolytic subunit [unidentified
           eubacterium SCB49]
 gi|149355128|gb|EDM43689.1| ATP-dependent Clp protease proteolytic subunit [unidentified
           eubacterium SCB49]
          Length = 183

 Score =  205 bits (521), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 87/182 (47%), Positives = 128/182 (70%), Gaps = 2/182 (1%)

Query: 26  TNRGERSYD-IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG 84
           T + ++  D I ++ L +R +F+ GQ++D  A  +  +L++L++ + + EI LYINSPGG
Sbjct: 3   TEKKQKVQDRIENQQLDDRTIFLWGQVDDRSAKHVVDRLMYLDSISNE-EIKLYINSPGG 61

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
            VT+G ++YDT++ IK P+ST C G AASMGS+LLS GEKG RF  P+AR+++HQPSGG 
Sbjct: 62  YVTSGFSMYDTIKSIKSPVSTICTGLAASMGSILLSVGEKGRRFIQPHARVMIHQPSGGA 121

Query: 145 SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            GQASDIE  AQ+I+K K    +I   NCG+ +++V K   RDH MSA E+  +G+VD +
Sbjct: 122 RGQASDIEITAQEILKTKEISAKILADNCGQDFDKVMKDFQRDHWMSAEESVAYGIVDGI 181

Query: 205 LM 206
           + 
Sbjct: 182 ME 183


>gi|317134129|ref|YP_004123449.1| ClpP [Rhizanthella gardneri]
 gi|255985060|gb|ACU46607.1| ClpP [Rhizanthella gardneri]
          Length = 195

 Score =  205 bits (521), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 68/189 (35%), Positives = 117/189 (61%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           +P V  +    E     D+Y+RL +ER++F+  +++  ++  +   +++L  E+  +++ 
Sbjct: 5   LPKVPFRIPGEEDAIWIDVYNRLYRERLLFLGQEVDSEISNQLVGLMVYLSIEDNTRDLH 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G++IYDTMQF+ P + T C+G AAS+GSL+L  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGISIYDTMQFVPPTVHTVCIGLAASIGSLILVGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++ +K++  + ++YV+   K    + K ++RD  MSA EA
Sbjct: 125 IHQPASSFYESQVGEFILEAEEFLKLRETILKVYVQRTSKPLFVISKDIERDVFMSAKEA 184

Query: 196 CDWGVVDKV 204
             +G+VD V
Sbjct: 185 LAYGIVDLV 193


>gi|302540393|ref|ZP_07292735.1| Clp protease [Streptomyces hygroscopicus ATCC 53653]
 gi|302458011|gb|EFL21104.1| Clp protease [Streptomyces himastatinicus ATCC 53653]
          Length = 211

 Score =  204 bits (520), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 85/194 (43%), Positives = 122/194 (62%), Gaps = 2/194 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T+ G R+ D YS+LL ERIVF+   ++D  A  + AQL+ LE   P +++SL
Sbjct: 9   VLPEFTERTSSGVRTMDPYSKLLSERIVFLGTPVDDTAANDVIAQLIHLEHAGPDQDVSL 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG   A  AIYDTM+F+   I T C+GQAAS  ++LL+AG  G R ALP AR+L+
Sbjct: 69  YINSPGGSFGAMTAIYDTMRFVTCDIETICLGQAASAAAVLLAAGAPGKRLALPGARVLI 128

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQ   S    G  SD+E  A ++++ +  L E+ V++ G++ E +   +DRD I  A  A
Sbjct: 129 HQAALSEPIEGTTSDLEIQAGELLRTQALLEEMLVRHTGQSAERIRADIDRDRIFDAEAA 188

Query: 196 CDWGVVDKVLMSRI 209
             +G+VD V  SR 
Sbjct: 189 VAYGLVDGVTQSRK 202


>gi|269795808|ref|YP_003315263.1| ATP-dependent Clp protease proteolytic subunit ClpP [Sanguibacter
           keddieii DSM 10542]
 gi|269097993|gb|ACZ22429.1| ATP-dependent Clp protease proteolytic subunit ClpP [Sanguibacter
           keddieii DSM 10542]
          Length = 212

 Score =  204 bits (520), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 79/180 (43%), Positives = 115/180 (63%)

Query: 27  NRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVV 86
             G  +  + S L+  R+V V  +I+D +AT +C+QLL L AE+P  ++ L I+SPGG V
Sbjct: 13  AGGALADRLTSGLMFRRVVVVGQEIDDDLATRVCSQLLLLSAEDPDADVVLLISSPGGSV 72

Query: 87  TAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG 146
           +AG+A+YD M+ I   +ST  +G AASMG  LLSAG +G RFALP+AR+L+HQ S G  G
Sbjct: 73  SAGLAMYDVMRLIPNDVSTVALGTAASMGQFLLSAGTRGKRFALPHARVLMHQGSAGLQG 132

Query: 147 QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
            A DI   A+++   K+ +  +  ++ G+ Y+ VE+  DRD   +A EA D+G VD V  
Sbjct: 133 TAVDIAIQAENLEHTKKVMLTLIAEHTGQPYDRVERDSDRDRWFTADEALDYGFVDAVAT 192


>gi|18422548|ref|NP_568644.1| CLPP4 (CLP PROTEASE P4); serine-type endopeptidase [Arabidopsis
           thaliana]
 gi|297794727|ref|XP_002865248.1| hypothetical protein ARALYDRAFT_494440 [Arabidopsis lyrata subsp.
           lyrata]
 gi|75306344|sp|Q94B60|CLPP4_ARATH RecName: Full=ATP-dependent Clp protease proteolytic subunit 4,
           chloroplastic; AltName: Full=Endopeptidase ClpP4;
           Short=nClpP4; AltName: Full=nClpP3; Flags: Precursor
 gi|14596089|gb|AAK68772.1| ATP-dependent Clp protease-like protein [Arabidopsis thaliana]
 gi|30023792|gb|AAP13429.1| At5g45390 [Arabidopsis thaliana]
 gi|297311083|gb|EFH41507.1| hypothetical protein ARALYDRAFT_494440 [Arabidopsis lyrata subsp.
           lyrata]
 gi|332007860|gb|AED95243.1| ATP-dependent Clp protease proteolytic subunit 4 [Arabidopsis
           thaliana]
          Length = 292

 Score =  204 bits (520), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 84/183 (45%), Positives = 124/183 (67%), Gaps = 1/183 (0%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           E   RG  S D+   LL+ERIVF+   I+D +A  I +QLL L+A++P+K+I L+INSPG
Sbjct: 70  ESAIRGAES-DVMGLLLRERIVFLGSSIDDFVADAIMSQLLLLDAKDPKKDIKLFINSPG 128

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           G ++A MAIYD +Q ++  +ST  +G AAS  S++L AG KG RFA+PN RI++HQP GG
Sbjct: 129 GSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGAGTKGKRFAMPNTRIMIHQPLGG 188

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            SGQA D+E  A++++  K  +  I      +++E+V K +DRD  MS  EA ++G++D 
Sbjct: 189 ASGQAIDVEIQAKEVMHNKNNVTSIIAGCTSRSFEQVLKDIDRDRYMSPIEAVEYGLIDG 248

Query: 204 VLM 206
           V+ 
Sbjct: 249 VID 251


>gi|319953820|ref|YP_004165087.1| ATP-dependent clp protease proteolytic subunit clpp [Cellulophaga
           algicola DSM 14237]
 gi|319422480|gb|ADV49589.1| ATP-dependent Clp protease proteolytic subunit ClpP [Cellulophaga
           algicola DSM 14237]
          Length = 182

 Score =  204 bits (520), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 86/181 (47%), Positives = 124/181 (68%), Gaps = 1/181 (0%)

Query: 26  TNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV 85
           + +G+    I  ++L+ER VF+ G ++D  A  +  +LL+L+ +   KEI LYINSPGG 
Sbjct: 3   SKKGKIQEAIDEKMLEERKVFLWGMVDDDSAKHVIDRLLYLDMQ-NDKEIQLYINSPGGY 61

Query: 86  VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS 145
           VT+G A+YDT++ +K P+ST C G AASMGS+LLS G+KG RF  P+A++++HQPSGG  
Sbjct: 62  VTSGFAMYDTIKSLKSPVSTICTGLAASMGSILLSVGKKGRRFIQPHAQVMIHQPSGGAR 121

Query: 146 GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           GQAS+IE  A++I+K K     I   NCG+ Y+ V K  DRD+ M A E+  +G+VD +L
Sbjct: 122 GQASNIEIQAKEIIKTKELSARILADNCGQDYDRVMKDFDRDYWMGAEESIAYGIVDGIL 181

Query: 206 M 206
            
Sbjct: 182 E 182


>gi|325126890|ref|YP_004286127.1| clp protease proteolytic subunit [Fragaria vesca subsp. vesca]
 gi|324022802|gb|ADY15376.1| clp protease proteolytic subunit [Fragaria vesca subsp. vesca]
          Length = 196

 Score =  204 bits (520), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 71/191 (37%), Positives = 116/191 (60%), Gaps = 3/191 (1%)

Query: 19  VPMVVEQTNRGERSYDIY-SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           VP V  ++   E +  I  +RL +ER++F+   +++ ++  +   +++L  E+  K++ L
Sbjct: 5   VPRVPFRSPGEEDAVWIDVNRLYRERLLFLGQGVDNEISNQLIGLMVYLSIEDETKDLYL 64

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN-ARIL 136
           +INSPGG V  G+AIYDTMQF++P I T CMG AASMGS +L  GE   R A P+  R++
Sbjct: 65  FINSPGGWVIPGVAIYDTMQFVRPDIQTVCMGLAASMGSFILVGGEITKRLAFPHARRVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  +  +Y +  GK    V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQTGEFVLEAEELLKLRETITRVYAQRTGKPLWVVSEDMERDVFMSATEA 184

Query: 196 CDWGVVDKVLM 206
              G+VD V  
Sbjct: 185 QAHGIVDLVAT 195


>gi|224125072|ref|XP_002329885.1| predicted protein [Populus trichocarpa]
 gi|222871122|gb|EEF08253.1| predicted protein [Populus trichocarpa]
          Length = 279

 Score =  204 bits (520), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 73/197 (37%), Positives = 117/197 (59%), Gaps = 3/197 (1%)

Query: 19  VPMVVEQTNR--GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            P V  +T      +  DI++ L +ERI+F+   I++  +  I A +L+L+  +  K + 
Sbjct: 72  TPRVPYRTPGEGTWQWVDIWNALYRERILFIGQNIDEEFSNQILATMLYLDTIDDSKRMY 131

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYIN PGG +T  +AIYDTMQ +K P+ T C+G A ++   LL+AGEKG R A+P +RI 
Sbjct: 132 LYINGPGGDLTPSLAIYDTMQSLKSPVGTHCVGFAYNLAGFLLTAGEKGNRSAMPLSRIA 191

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           L  P+G   GQA DI   A ++++I+  L     K  G+ +E++ K L R     A +A 
Sbjct: 192 LQSPAGAARGQADDICNEANELLRIRDYLYNELSKKTGQPFEKISKDLSRMKRFEAQDAL 251

Query: 197 DWGVVDKVLM-SRIDIE 212
           ++G++D+++   RID +
Sbjct: 252 EYGLIDRIIRPPRIDDD 268


>gi|182440084|ref|YP_001827803.1| putative ATP-dependent Clp protease [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178468600|dbj|BAG23120.1| putative ATP-dependent Clp protease [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 201

 Score =  204 bits (520), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 82/193 (42%), Positives = 125/193 (64%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G R+ D YS+LL ERIVF+   I+D  A+ + AQL++LE  +P + +SL
Sbjct: 9   VLPEFTERTATGTRTLDPYSKLLSERIVFLGSPIDDIAASDLIAQLMYLEHADPDRPLSL 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG   A  A+YDTM+F+   + TFC+GQA S  + LL+ G KG R ALP AR+++
Sbjct: 69  YINSPGGTFQAMAAVYDTMRFLTCEVETFCLGQAGSYAAALLAGGTKGRRHALPGARVVI 128

Query: 138 HQPSG--GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
            QP+      GQ SD+E HA+++V+ +     + V++ G+T E++   ++RD I+ A  A
Sbjct: 129 QQPAMEEPMRGQPSDLEIHARELVRTREMFAAMLVRDTGRTAEQITADIERDTILDAEAA 188

Query: 196 CDWGVVDKVLMSR 208
              G+VD V+ +R
Sbjct: 189 LAHGLVDHVVANR 201


>gi|225010913|ref|ZP_03701380.1| Endopeptidase Clp [Flavobacteria bacterium MS024-3C]
 gi|225004960|gb|EEG42915.1| Endopeptidase Clp [Flavobacteria bacterium MS024-3C]
          Length = 181

 Score =  204 bits (520), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 85/171 (49%), Positives = 121/171 (70%), Gaps = 1/171 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I  + L+ER VF+ GQ++D  A  +  +LL+L+ +N   EI L INSPGG VT+G AIYD
Sbjct: 12  IEEKFLEERKVFLWGQVDDASAKHVIDRLLYLDLQNNN-EIQLVINSPGGYVTSGFAIYD 70

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           T++ +K P+ST C G AASMGS+LLSAG KG RF  P+A++++HQPSGG  GQAS+IE  
Sbjct: 71  TIKSLKSPVSTVCSGLAASMGSILLSAGAKGRRFMQPHAQVMIHQPSGGARGQASNIEIQ 130

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A++I+K +    +I   NCG+  ++V K  DRD+ M+A E+  +G+VD +L
Sbjct: 131 AREIIKTRELSAQILADNCGQKVDKVMKDFDRDYWMNAEESLAYGIVDAML 181


>gi|168036370|ref|XP_001770680.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678041|gb|EDQ64504.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 214

 Score =  204 bits (519), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 73/192 (38%), Positives = 115/192 (59%), Gaps = 2/192 (1%)

Query: 19  VPMVVEQTNR--GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            P V  +T    G +  DI++ L +ERI+F+   I++     + A +L+L++ +  K + 
Sbjct: 6   TPKVPYRTPGEGGWQWVDIWNVLYRERIIFLGQYIDEEFGNQVVATMLYLDSVDNSKPMY 65

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYIN PGG +T  MAIYDTM+ IK P+ T  +G A +   LLL+AG KGMR A+P  R+ 
Sbjct: 66  LYINCPGGDITPCMAIYDTMESIKSPVGTLALGYAYNNAGLLLAAGAKGMRTAMPLTRVA 125

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           L  P+G   GQA DI   A+++ +++  + E   K  G+  ++V K L+R    SA EA 
Sbjct: 126 LMSPAGAARGQADDIINEAKELNRVRNYVYEQVSKKTGQPVDKVMKDLNRIKRFSAKEAL 185

Query: 197 DWGVVDKVLMSR 208
           ++G++DKV+  +
Sbjct: 186 EYGIIDKVVRPK 197


>gi|37523336|ref|NP_926713.1| ATP-dependent Clp protease-like protein [Gloeobacter violaceus PCC
           7421]
 gi|81708690|sp|Q7NEW1|CLPP2_GLOVI RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|35214340|dbj|BAC91708.1| clpP [Gloeobacter violaceus PCC 7421]
          Length = 218

 Score =  204 bits (519), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 79/168 (47%), Positives = 114/168 (67%), Gaps = 2/168 (1%)

Query: 41  KERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG--GVVTAGMAIYDTMQF 98
            ERIV++   I D +A L+ AQLL+LE+E+  K I +YINSPG  G  T+  A+YDTM+ 
Sbjct: 35  NERIVYLGTPINDVVAELLIAQLLYLESEDNAKPIEIYINSPGVAGFETSAFAVYDTMRH 94

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           ++ PI T C+G A    +LL++AG KG R +LPN+RI+L+QP GG  GQA+DI   AQ++
Sbjct: 95  VRMPIKTICLGLAGGFSALLMAAGTKGQRMSLPNSRIILYQPYGGARGQATDINIRAQEL 154

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           +  KR LN++   + GKT E+++K  +R   MS  EA  +G++DKVL 
Sbjct: 155 LTTKRTLNQLLSIHTGKTVEQIDKDTERLFYMSPQEAVSYGLIDKVLE 202


>gi|290489452|gb|ADD31110.1| clp protease proteolytic subunit protein [Ximenia americana]
          Length = 198

 Score =  204 bits (519), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 74/191 (38%), Positives = 115/191 (60%), Gaps = 5/191 (2%)

Query: 19  VPMVVEQTNRGE--RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     DIY++L +ER +F+   ++  ++  +   +++L  E+  K++ 
Sbjct: 5   VPKVPSRIPGEEYATWVDIYNQLYRERFLFLGQAVDSEISNQLIGLMVYLSIEDDTKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI- 135
           L+INSPGG V  G+AIYDT+QF++P + T CMG AASMGS +L  GE   R A P+ARI 
Sbjct: 65  LFINSPGGWVIPGIAIYDTIQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARIR 124

Query: 136 -LLHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            ++HQP S  F  Q  +    A++++K++  L  +Y +  GK    V + ++RD  MSA+
Sbjct: 125 VMIHQPASSYFEAQTGEFILEAEELLKLRETLTGVYGQRTGKPLWVVSEDMERDVFMSAT 184

Query: 194 EACDWGVVDKV 204
           EA   G+VD V
Sbjct: 185 EAQAHGIVDLV 195


>gi|69214837|gb|AAZ03801.1| ATP-depedent Clp protease proteolytic subunit [Nuphar advena]
          Length = 196

 Score =  204 bits (519), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 69/189 (36%), Positives = 114/189 (60%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGERSYDI-YSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           VP V  ++   E +  +  +RL +ER++F+   ++  ++  +   +++L  E+  +++ L
Sbjct: 5   VPKVPFRSPGEEDAVWVDINRLHRERLLFLGQGVDSEISNQLVGLMVYLSMEDNTRDLYL 64

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN-ARIL 136
           +INSPGG V  G+AIYD MQ + P + T CMG AASMGS +L  GE   R A P+  R++
Sbjct: 65  FINSPGGWVIPGIAIYDAMQIVPPDVHTICMGLAASMGSFILVGGEFTKRLAFPHARRVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  QA +    A++++K++  L  +YV+  GK    V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQAGEFILEAEELLKLREILTRVYVQRTGKPLWVVSEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGIVDLV 193


>gi|308745997|ref|YP_003934583.1| clp protease proteolytic subunit [Cheilanthes lindheimeri]
 gi|302375430|gb|ADL29804.1| clp protease proteolytic subunit [Cheilanthes lindheimeri]
          Length = 200

 Score =  204 bits (519), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 75/189 (39%), Positives = 119/189 (62%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGERSY--DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E +   D+Y+RL +ER++F+  Q++D +A  +   +++L  E+  K++ 
Sbjct: 5   VPKVPFRLPGEEDAVRVDVYNRLYRERLLFLGQQVDDEIANQLIGIMMYLNGEDQAKDMY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LY+NSPGG V AG+++YD MQF+ P + T CMG AASMGS +L+ GE   R ALP+AR++
Sbjct: 65  LYVNSPGGAVLAGISVYDAMQFVVPDVHTICMGLAASMGSSILAGGEITRRIALPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  + GQA +    A++  K++  +  +Y +  GK    + + ++RD   SA EA
Sbjct: 125 IHQPASSYYDGQAGECVMEAEEASKLRDCITRVYAQRTGKPLWIISEDMERDVFSSAEEA 184

Query: 196 CDWGVVDKV 204
            D+GV D V
Sbjct: 185 QDYGVADLV 193


>gi|300869049|ref|ZP_07113651.1| ATP-dependent Clp protease-like protein [Oscillatoria sp. PCC 6506]
 gi|300332960|emb|CBN58845.1| ATP-dependent Clp protease-like protein [Oscillatoria sp. PCC 6506]
          Length = 222

 Score =  203 bits (518), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 81/207 (39%), Positives = 122/207 (58%), Gaps = 20/207 (9%)

Query: 27  NRGERSYDIYSRLLKERIVFVTGQ----------IEDHMATLICAQLLFLEAENPQKEIS 76
           N      D+ S LLKERIV++             +   +  LI AQLL+L+ ++P+K I 
Sbjct: 10  NYRTPPPDLESLLLKERIVYLGMPLFSSDEIKRNVGIDVTELIIAQLLYLQFDDPEKPIY 69

Query: 77  LYINSPGGV----------VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
            YINS G             T   AI DTM +IKPP+ T C+GQA    +++LSAG KG 
Sbjct: 70  FYINSSGTSWGDEGYAIGLETEAFAICDTMSYIKPPVHTICIGQAMGTAAMILSAGTKGF 129

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           R +LP+A I+L+Q   G  GQA+DI+  AQ+++  KR + EI+ KN G+T E++ K +DR
Sbjct: 130 RASLPHATIVLNQSKTGGRGQATDIQIMAQEVLLNKRTVVEIFAKNTGQTVEKIAKDMDR 189

Query: 187 DHIMSASEACDWGVVDKVLMSRIDIEE 213
              ++ +EA ++G++D+VL S  D+ +
Sbjct: 190 MFYLTPAEAKEYGLLDRVLESSKDLPK 216


>gi|169142814|ref|YP_001687238.1| ATP-dependent Clp protease proteolytic subunit [Aneura mirabilis]
 gi|153973840|gb|ABS54500.1| clp protease proteolytic subunit [Aneura mirabilis]
          Length = 203

 Score =  203 bits (518), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 75/188 (39%), Positives = 120/188 (63%), Gaps = 2/188 (1%)

Query: 19  VPMVVEQTNRGERSYDIY-SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           VP V  +    E +  I  +RL +ER++F+  Q++D +A  +   +++L  E+  K++ L
Sbjct: 5   VPKVPFRLPGEEDAVWIDVNRLYRERLLFLGQQVDDEIANQLIGIMMYLNGEDETKDMYL 64

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG+++YD MQF+ P + T CMG AASMGS +L+ GE   R ALP+AR+++
Sbjct: 65  YINSPGGAVLAGISVYDAMQFVVPDVHTICMGLAASMGSFILTGGEITKRIALPHARVMI 124

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP S  + GQA +    A++++K++  + ++YV+  GK    + + ++RD   SA EA 
Sbjct: 125 HQPASSYYDGQAGECIMEAEEVLKLRDCITKVYVQRTGKPLWIISEDMERDVFSSAEEAK 184

Query: 197 DWGVVDKV 204
             G+VD V
Sbjct: 185 IHGIVDSV 192


>gi|139387476|ref|YP_001122831.1| clp protease proteolytic subunit [Phaseolus vulgaris]
 gi|160380561|sp|A4GGD0|CLPP_PHAVU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|112030998|gb|ABH88110.1| clp protease proteolytic subunit [Phaseolus vulgaris]
          Length = 195

 Score =  203 bits (518), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 71/190 (37%), Positives = 117/190 (61%), Gaps = 6/190 (3%)

Query: 19  VPMVVEQTN--RGERSYDI-YSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           VP V  +T   R     DI  +RL +ER++F+   ++  ++  + + +++L  E   K++
Sbjct: 5   VPRVPFRTPGDRDASWVDILINRLYRERLLFLGQDVDSEISNQLISLMIYLSIEKENKDL 64

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            L+INSPGG V  G+A+YDTMQF++P + T C+G AASMGS LL+ G    R A P+A  
Sbjct: 65  YLFINSPGGWVIPGIALYDTMQFVQPDVQTVCLGLAASMGSFLLAGGTITKRLAFPHA-- 122

Query: 136 LLHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           ++HQP S  +  QA +    A++++K++  +  +YV+  GK+   + + ++RD  MSA+E
Sbjct: 123 MIHQPASSFYEAQAGEFILEAEELLKMRETITRVYVQRTGKSLWVISEDMERDVFMSAAE 182

Query: 195 ACDWGVVDKV 204
           A   G+VD V
Sbjct: 183 AQAHGIVDLV 192


>gi|148240099|ref|YP_001225486.1| ATP-dependent Clp protease-like protein [Synechococcus sp. WH 7803]
 gi|147848638|emb|CAK24189.1| Protease subunit of ATP-dependent Clp protease [Synechococcus sp.
           WH 7803]
          Length = 223

 Score =  203 bits (518), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 79/191 (41%), Positives = 114/191 (59%), Gaps = 19/191 (9%)

Query: 41  KERIVFVT----------GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV----- 85
           KERIV++            Q+   +  LI AQLL+LE +NP K I  YINS G       
Sbjct: 27  KERIVYLGLPLFSDDDTKRQVGIDVTELIIAQLLYLEFDNPDKPIYFYINSTGTSWYTGD 86

Query: 86  ----VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
                T   AI DT++++KPP+ T C+GQA    +++LSAG KG R ALP+A I+LHQP 
Sbjct: 87  AIGFETEAFAICDTLRYVKPPVHTICIGQAMGTAAVILSAGTKGQRAALPHASIVLHQPR 146

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            G  GQA+DI+  AQ+++  KR + EI   N G++ EE+ K  DR   ++  +A ++G++
Sbjct: 147 SGARGQATDIQIRAQEVLHNKRAMLEILSTNTGRSVEELSKDSDRMSYLTPEQAKEYGLI 206

Query: 202 DKVLMSRIDIE 212
           D+VL SR D+ 
Sbjct: 207 DRVLTSRKDLP 217


>gi|16331161|ref|NP_441889.1| ATP-dependent Clp protease-like-protein [Synechocystis sp. PCC
           6803]
 gi|18202351|sp|P74466|CLPR_SYNY3 RecName: Full=Putative ATP-dependent Clp protease proteolytic
           subunit-like; AltName: Full=Endopeptidase Clp-like
 gi|1653655|dbj|BAA18567.1| ATP-dependent Clp protease proteolytic subunit [Synechocystis sp.
           PCC 6803]
          Length = 225

 Score =  203 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 74/199 (37%), Positives = 119/199 (59%), Gaps = 19/199 (9%)

Query: 34  DIYSRLLKERIVFVTG----------QIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           D+ S LLKERIV++            Q+   +  LI AQLL+L+ ++P K I  YINS G
Sbjct: 22  DLESLLLKERIVYLGMPLFSSDEVKQQVGIDVTQLIIAQLLYLQFDDPDKPIYFYINSTG 81

Query: 84  GV---------VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
                       T   AI DT+ +IKPP+ T C+GQA    +++LS+G KG R +LP+A 
Sbjct: 82  TSWYTGDAVGFETEAFAICDTLNYIKPPVHTICIGQAMGTAAMILSSGTKGYRASLPHAT 141

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I+L+Q   G  GQA+DI+  A++++  K+ + EI   N G+T E++ K +DR   ++ ++
Sbjct: 142 IVLNQNRTGAQGQATDIQIRAKEVISNKQTMLEILSLNTGQTQEKLAKDMDRTFYLTPAQ 201

Query: 195 ACDWGVVDKVLMSRIDIEE 213
           A ++G++D+VL S  ++ +
Sbjct: 202 AKEYGLIDRVLESPAELPK 220


>gi|48478794|ref|YP_024401.1| ATP-dependent Clp protease proteolytic subunit [Saccharum hybrid
           cultivar SP-80-3280]
 gi|50812552|ref|YP_054654.1| ATP-dependent Clp protease proteolytic subunit [Saccharum
           officinarum]
 gi|118614516|ref|YP_899432.1| clp protease proteolytic subunit [Sorghum bicolor]
 gi|260677443|ref|YP_003208211.1| clp protease proteolytic subunit [Coix lacryma-jobi]
 gi|68052134|sp|Q6ENT9|CLPP_SACOF RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|75291219|sp|Q6L377|CLPP_SACHY RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|125863811|sp|A1E9U9|CLPP_SORBI RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|48478696|gb|AAT44716.1| ATP-dependent Clp protease subunit [Saccharum hybrid cultivar
           SP80-3280]
 gi|49659536|dbj|BAD27317.1| ATP-dependent protease [Saccharum hybrid cultivar NCo 310]
 gi|118201150|gb|ABK79520.1| clp protease proteolytic subunit [Sorghum bicolor]
 gi|209361381|gb|ACI43296.1| clp protease proteolytic subunit [Coix lacryma-jobi]
          Length = 216

 Score =  203 bits (517), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 71/195 (36%), Positives = 110/195 (56%), Gaps = 3/195 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+ + +ER +F+  +I   +   I   +++L  E+   +I 
Sbjct: 5   VPKVPYRIPGDEEATWVDLYNVMYRERTLFLGQEIRCEITNHITGLMVYLSIEDGNSDIF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG + +GMAI+DTMQ + P I T C+G AASM S +L  GE   R A P+ARI+
Sbjct: 65  LFINSPGGWLISGMAIFDTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           LHQP S  +  +  +     +++ K++  +  +Y    GK +  V + ++RD  MSA EA
Sbjct: 125 LHQPASAYYRARTPEFLLEVEELHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEA 184

Query: 196 CDWGVVDKVLMSRID 210
             +G+VD V    ID
Sbjct: 185 KAYGLVDIVGDEMID 199


>gi|295132831|ref|YP_003583507.1| ATP-dependent Clp protease proteolytic subunit [Zunongwangia
           profunda SM-A87]
 gi|294980846|gb|ADF51311.1| ATP-dependent Clp protease proteolytic subunit [Zunongwangia
           profunda SM-A87]
          Length = 182

 Score =  203 bits (517), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 88/177 (49%), Positives = 123/177 (69%), Gaps = 1/177 (0%)

Query: 29  GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTA 88
           G+    I ++ L ER +F+ G ++D  A  +  +L++L+ E  + EI LYINSPGG VT 
Sbjct: 6   GKIQDKIDAKFLDERKIFMWGPVDDKSAKHVIDRLIYLDLEGKE-EIQLYINSPGGYVTD 64

Query: 89  GMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQA 148
           G AIYDT+Q I  P+ST C G AASMGS+LLSAG+KG RF  P+A++++HQPSGG  GQA
Sbjct: 65  GFAIYDTIQAIDAPVSTICTGLAASMGSILLSAGKKGRRFIQPHAKVMIHQPSGGARGQA 124

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           S+IE  A +I+K K    +I  +NCG+T E+V K  +RD+ M A E+ D+G+VD +L
Sbjct: 125 SNIEIQATEILKTKELSAKILAENCGQTVEKVMKDFNRDYWMDAKESLDYGIVDAIL 181


>gi|21593305|gb|AAM65254.1| ATP-dependent Clp protease proteolytic subunit (ClpP4) [Arabidopsis
           thaliana]
          Length = 292

 Score =  203 bits (517), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 83/183 (45%), Positives = 123/183 (67%), Gaps = 1/183 (0%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           E   RG  S D+   LL+ERIVF+   I+D +A  I +QLL L+A++P+K+I L+INSPG
Sbjct: 70  ESAIRGAES-DVMGLLLRERIVFLGSSIDDFVADAIMSQLLLLDAKDPKKDIKLFINSPG 128

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           G ++A MAIYD +Q ++  +ST  +G AAS  S++L AG KG RFA+PN RI++HQP GG
Sbjct: 129 GSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGAGTKGKRFAMPNTRIMIHQPLGG 188

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            SGQ  D+E  A++++  K  +  I      +++E+V K +DRD  MS  EA ++G++D 
Sbjct: 189 ASGQVIDVEIQAKEVMHNKNNVTSIIAGCTSRSFEQVLKDIDRDRYMSPIEAVEYGLIDG 248

Query: 204 VLM 206
           V+ 
Sbjct: 249 VID 251


>gi|254431834|ref|ZP_05045537.1| Clp protease [Cyanobium sp. PCC 7001]
 gi|197626287|gb|EDY38846.1| Clp protease [Cyanobium sp. PCC 7001]
          Length = 232

 Score =  203 bits (517), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 79/191 (41%), Positives = 116/191 (60%), Gaps = 19/191 (9%)

Query: 41  KERIVFVT----------GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV----- 85
           KERIV++            Q+   +  LI AQLL+LE +NP+K I  YINS G       
Sbjct: 27  KERIVYLGLPLFSDDEAKRQMGIDVTELIIAQLLYLEFDNPEKPIFFYINSTGTSWFTGD 86

Query: 86  ----VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
                T   AI DT++++KPP+ T C+GQA    +++LSAG KG R ALP+A I+LHQP 
Sbjct: 87  AIGFETEAFAIADTIRYVKPPVHTICIGQAMGTAAMILSAGTKGQRAALPHATIVLHQPR 146

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            G  GQASDI+  AQ+++  KR + ++   N GK+ E++ K  DR   ++A +A D+G++
Sbjct: 147 SGAQGQASDIQIRAQEVLHNKRTMLQMLADNTGKSVEQLSKDSDRMTYLTAEQAKDYGLI 206

Query: 202 DKVLMSRIDIE 212
           D+VL S+ D+ 
Sbjct: 207 DRVLTSQKDVP 217


>gi|115443583|ref|YP_778602.1| ATP-dependent Clp protease proteolytic subunit [Bigelowiella
           natans]
 gi|122227446|sp|Q06J25|CLPP_BIGNA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|110810228|gb|ABG91434.1| ATP-dependent Clp protease proteolytic subunit [Bigelowiella
           natans]
          Length = 195

 Score =  203 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 80/191 (41%), Positives = 130/191 (68%), Gaps = 2/191 (1%)

Query: 19  VPMVV--EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           +P V+  E T+   +  DIY+RL K+RI+F+   ++D  +  I + LL L++E+ ++ I 
Sbjct: 5   IPKVLFKESTDTTPQWVDIYTRLYKDRIIFLFQLLDDDFSNQIISMLLHLDSESKEELIY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            YINS GG V +G++IYDTM FI   I T C+G A+S+ SL+L+ G++  RF LP++R+L
Sbjct: 65  FYINSVGGSVLSGISIYDTMNFINSEIVTLCIGIASSISSLILANGKRTKRFILPHSRVL 124

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           LHQP    SGQASDI   +++I++++R L +IY++N  +T   V + +DRD  +S+ EA 
Sbjct: 125 LHQPIMQVSGQASDILIESEEILRLRRILTKIYIENIDQTISRVARDIDRDCFLSSREAK 184

Query: 197 DWGVVDKVLMS 207
           ++G+VD +L +
Sbjct: 185 NYGIVDYILTN 195


>gi|320537176|ref|ZP_08037146.1| Clp protease [Treponema phagedenis F0421]
 gi|320145982|gb|EFW37628.1| Clp protease [Treponema phagedenis F0421]
          Length = 197

 Score =  203 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 75/191 (39%), Positives = 121/191 (63%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           E+ + G  S  +  + L+ R + ++G++   +A  +  QLL LEAE+  K I +YI+SPG
Sbjct: 7   EEQDNGIGSNVLIGKFLETRQILLSGEVNKELAEKVIRQLLILEAESATKPIYVYIDSPG 66

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           G V AG AI+D ++F+KPP+    MG  AS G+L+L AG K  R  LPN+  L+HQP  G
Sbjct: 67  GDVDAGYAIFDMIRFVKPPVYMIGMGLVASAGALILLAGAKDYRLGLPNSHYLIHQPLSG 126

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
             G A+DIE HA+++ K ++++NE+     G   ++VEK  DRD+ + A +A  +G++ K
Sbjct: 127 MKGVATDIEIHAKELEKTRQKINELIAAQTGTEIKKVEKDTDRDYWLDAPDALSYGLISK 186

Query: 204 VLMSRIDIEEK 214
           ++ SR ++ +K
Sbjct: 187 IIASRNELPKK 197


>gi|602758|gb|AAA81878.1| clp-like energy-dependent protease [Solanum lycopersicum]
          Length = 275

 Score =  203 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 72/206 (34%), Positives = 125/206 (60%), Gaps = 6/206 (2%)

Query: 2   SFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICA 61
           S+     K+  +    ++P V+  T  G  + D+ + L + RI+F+   +   +A  + +
Sbjct: 74  SYGVIVAKEGANP--PIMPAVM--TPVG--ALDLSTVLFRNRIIFIGQPVNSAVAQKVIS 127

Query: 62  QLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSA 121
           QL+ L   +   +I +Y+N PGG   + +AIYD M +IKP + T C G AAS G+LLL+ 
Sbjct: 128 QLVTLATIDENADILIYLNCPGGSTYSVLAIYDCMSWIKPKVGTVCFGAAASQGALLLAG 187

Query: 122 GEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVE 181
           GEKGMR+A+PNARI++HQP  G  G   D+ R   + V+ +++++++Y    G++ E ++
Sbjct: 188 GEKGMRYAMPNARIMIHQPQSGCGGHVEDVRRQVNEAVQSRQKVDKMYAAFTGQSIEMIQ 247

Query: 182 KTLDRDHIMSASEACDWGVVDKVLMS 207
              +RD  MS++EA ++G++D VL +
Sbjct: 248 TYTERDRFMSSAEAMEFGLIDGVLET 273


>gi|307331320|ref|ZP_07610442.1| Endopeptidase Clp [Streptomyces violaceusniger Tu 4113]
 gi|306883061|gb|EFN14125.1| Endopeptidase Clp [Streptomyces violaceusniger Tu 4113]
          Length = 211

 Score =  203 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 83/194 (42%), Positives = 120/194 (61%), Gaps = 2/194 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T+ G  + D YS+LL ERIVF+   I+D  A  + AQL+ LE   P ++ISL
Sbjct: 9   VLPEFTERTSSGTHTMDPYSKLLSERIVFLGTPIDDTAANDVIAQLIHLEHAAPGQDISL 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG   A  A+YDT+ FI   + T C+GQAAS  ++LL+AG  G R ALP ARIL+
Sbjct: 69  YINSPGGSFGAMTAVYDTLHFISCDVETICLGQAASAAAVLLAAGTPGKRLALPGARILI 128

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           HQ   +    G  SD+E  A ++ + +  L ++ V++ G++ E +   +DRD I  A  A
Sbjct: 129 HQAGFAEPVEGTTSDLEIQANELRRTQETLEQMLVRHTGRSAERIRADIDRDKIFDAESA 188

Query: 196 CDWGVVDKVLMSRI 209
             +G+VD+V  SR 
Sbjct: 189 VAYGLVDQVTQSRK 202


>gi|254499146|ref|ZP_05111834.1| truncated ATP-dependent Clp protease proteolytic subunit
           [Legionella drancourtii LLAP12]
 gi|254351635|gb|EET10482.1| truncated ATP-dependent Clp protease proteolytic subunit
           [Legionella drancourtii LLAP12]
          Length = 169

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 95/160 (59%), Positives = 130/160 (81%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM 108
           G++EDHMA L+ AQLLFLE+ENP+K+ISLYINSPGGVVTAG+AIYDTMQFIKP +ST C+
Sbjct: 2   GEVEDHMANLVVAQLLFLESENPEKDISLYINSPGGVVTAGLAIYDTMQFIKPDVSTLCI 61

Query: 109 GQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           GQAAS  +LLL AG  G RF LPN+R+++HQP GG+ GQA+DIE HA++ + ++ RLN I
Sbjct: 62  GQAASAAALLLCAGADGKRFCLPNSRVMIHQPLGGYRGQATDIEIHARETLAVRERLNSI 121

Query: 169 YVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
             K+  KT +++ +  +RD+ MSA++A ++G++DKV+  R
Sbjct: 122 MAKHTKKTPDQIMRDTERDNFMSATQAAEYGLIDKVIYDR 161


>gi|156094115|ref|XP_001613095.1| ATP-dependent CLP protease [Plasmodium vivax SaI-1]
 gi|148801969|gb|EDL43368.1| ATP-dependent CLP protease, putative [Plasmodium vivax]
          Length = 375

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 72/193 (37%), Positives = 116/193 (60%), Gaps = 4/193 (2%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GL+P V    +  +   D+     K+RI+++T +I    A  + +QLL+L++ N   +I 
Sbjct: 173 GLLPRV---NHIKDMKKDVKLFFFKKRIIYLTEEINKKTADELISQLLYLDSLNHD-DIK 228

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG +  G+AI D   +I+  I T   G  ASM S++L++G+KG R +LPN RI+
Sbjct: 229 IYINSPGGSINEGLAILDIFNYIQSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIM 288

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP G   G   DIE   ++I+ +K+ L         +T E +EK  DRDH M+A EA 
Sbjct: 289 IHQPLGNAFGHPQDIEIQTKEILYLKKLLYNYLSSFTNQTIETIEKDSDRDHYMNALEAK 348

Query: 197 DWGVVDKVLMSRI 209
            +G++D+V+ +++
Sbjct: 349 RYGIIDEVIQTKL 361


>gi|168041627|ref|XP_001773292.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162675334|gb|EDQ61830.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 220

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 73/192 (38%), Positives = 117/192 (60%), Gaps = 2/192 (1%)

Query: 19  VPMVVEQTNR--GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            P V  +T    G +  DI++ L +ERI+F+   I++     + A +L+L++ +  K + 
Sbjct: 12  TPKVPYRTPGEGGWQWVDIWNVLYRERIIFLGQYIDEEFGNQVVATMLYLDSVDNSKPMH 71

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYIN PGG +T  MAIYDTM+ IK P+ T  +G A +   LLL+AG KGMR A+P  R+ 
Sbjct: 72  LYINCPGGDITPCMAIYDTMESIKSPVGTLALGYAYNNAGLLLAAGAKGMRVAMPLTRVA 131

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           L  P+G   GQA DI   A+++ +++  + E   K  G+ +++V K L+R    SA+EA 
Sbjct: 132 LMSPAGAARGQADDIINEAKELNRVRNYVYEQVSKKTGQPFDKVVKDLNRIKRFSANEAL 191

Query: 197 DWGVVDKVLMSR 208
           ++G++DKV+  +
Sbjct: 192 EYGIIDKVVRPK 203


>gi|150251498|ref|YP_001312231.1| ATP-dependent Clp protease proteolytic subunit [Cycas taitungensis]
 gi|160380551|sp|A6H5K6|CLPP_CYCTA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|149941548|dbj|BAF64972.1| ATP-dependent Clp protease proteolytic subunit [Cycas taitungensis]
          Length = 195

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 75/193 (38%), Positives = 118/193 (61%), Gaps = 6/193 (3%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP V  +    E      +RL +ER++F   Q++D +A  +   +++L  E+  K+I  Y
Sbjct: 5   VPKVPFRIPGEED-----NRLYRERLLFPGQQVDDEIANQLIGIMMYLNGEDENKDIYPY 59

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG V  G++IYD MQF+ P + T CMG AASMGS +L+ GE   R ALP+AR+++H
Sbjct: 60  INSPGGAVIPGISIYDAMQFVVPDVHTICMGLAASMGSSVLTGGEITKRIALPHARVMIH 119

Query: 139 QP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP S  + GQA +    A++++K++  +  +YV+  GK    +   ++RD  MSA+EA  
Sbjct: 120 QPASSYYDGQAGECIMEAEEVLKLRDSITNVYVQRTGKPLWVISGDMERDVFMSATEAQA 179

Query: 198 WGVVDKVLMSRID 210
           +G+VD V +   +
Sbjct: 180 YGIVDLVAVENTE 192


>gi|88809169|ref|ZP_01124678.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           WH 7805]
 gi|88787111|gb|EAR18269.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           WH 7805]
          Length = 223

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 78/192 (40%), Positives = 115/192 (59%), Gaps = 19/192 (9%)

Query: 41  KERIVFVT----------GQIEDHMATLICAQLLFLEAENPQKEISLYINSPG------- 83
           KERIV++            Q+   +  LI AQLL+LE ++P K I  YINS G       
Sbjct: 27  KERIVYLGLPLFSDDDTKRQVGIDVTELIIAQLLYLEFDDPDKPIYFYINSTGTTWYTGD 86

Query: 84  --GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
             G  T   AI DT++++KPP+ T C+GQA    +++LSAG KG R ALP++ I+LHQP 
Sbjct: 87  AIGFETEAFAICDTLRYVKPPVHTICIGQAMGTAAVILSAGTKGQRAALPHSSIVLHQPR 146

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            G  GQA+DI+  A++++  KR + EI   N G++ EE+ K  DR   ++  +A D+G++
Sbjct: 147 SGARGQATDIQIRAKEVLHNKRAMLEILAANTGRSVEELSKDSDRMSYLTPDQAKDYGLI 206

Query: 202 DKVLMSRIDIEE 213
           D+VL SR D+  
Sbjct: 207 DRVLTSRKDLPS 218


>gi|163840396|ref|YP_001624801.1| ATP-dependent endopeptidase Clp proteolytic subunit [Renibacterium
           salmoninarum ATCC 33209]
 gi|162953872|gb|ABY23387.1| ATP-dependent endopeptidase clp proteolytic subunit [Renibacterium
           salmoninarum ATCC 33209]
          Length = 211

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 83/175 (47%), Positives = 117/175 (66%)

Query: 38  RLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97
           RLL +RIV +  +++D +A  I AQLL L AE+P+ +ISLYINSPGG V+AGMAIYDTM 
Sbjct: 28  RLLHQRIVVLGTEVDDAVANRIVAQLLLLSAEDPRADISLYINSPGGSVSAGMAIYDTMM 87

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
            I   + T  MG AASMG +LL AG  G RF+LP++RIL+HQ S G  G  +D+E   Q+
Sbjct: 88  MIPNEVGTLAMGLAASMGQILLCAGAAGKRFSLPHSRILMHQGSAGIQGTTADVEIQEQN 147

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
           +  I+  +N +   + G T  E+E+  DRDH  SA EA  +G+VD ++ +  +++
Sbjct: 148 LRAIEDMVNGLLAHHTGHTIAEIERDSDRDHWFSAEEARQYGMVDHLVGNLAELQ 202


>gi|18391391|ref|NP_563907.1| CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2); serine-type
           endopeptidase [Arabidopsis thaliana]
 gi|75315329|sp|Q9XJ36|CLPR2_ARATH RecName: Full=ATP-dependent Clp protease proteolytic
           subunit-related protein 2, chloroplastic; Short=ClpR2;
           Short=nClpP2; Flags: Precursor
 gi|8778627|gb|AAF79635.1|AC025416_9 F5O11.13 [Arabidopsis thaliana]
 gi|5360589|dbj|BAA82066.1| nClpP2 [Arabidopsis thaliana]
 gi|17065388|gb|AAL32848.1| similar to nClpP2 [Arabidopsis thaliana]
 gi|20148625|gb|AAM10203.1| similar to nClpP2 dbj|BAA82066.1 [Arabidopsis thaliana]
 gi|332190755|gb|AEE28876.1| ATP-dependent Clp protease, protease subunit [Arabidopsis thaliana]
          Length = 279

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 73/206 (35%), Positives = 119/206 (57%), Gaps = 4/206 (1%)

Query: 4   EGCAKKDSEDVFLGLV--PMVVEQT--NRGERSYDIYSRLLKERIVFVTGQIEDHMATLI 59
            G  K     V +  +  P V  +       +  DI++ L +ER++F+   I++  +  I
Sbjct: 55  SGTGKASRSRVKMMPIGTPRVPYRNREEGTWQWVDIWNALYRERVIFIGQNIDEEFSNQI 114

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
            A +L+L+  +  + I +Y+N PGG +T  +AIYDTM+ +K P+ T C+G A ++   LL
Sbjct: 115 LATMLYLDTLDDSRRIYMYLNGPGGDLTPSLAIYDTMKSLKSPVGTHCVGLAYNLAGFLL 174

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
           +AGEKG RFA+P +RI L  P+G   GQA DI+  A+++ +I+  L     KN G+  E 
Sbjct: 175 AAGEKGHRFAMPLSRIALQSPAGAARGQADDIQNEAKELSRIRDYLFNELAKNTGQPAER 234

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVL 205
           V K L R    +A EA ++G++DK++
Sbjct: 235 VFKDLSRVKRFNAEEAIEYGLIDKIV 260


>gi|16209712|gb|AAL14412.1| At1g12410/F5O11_7 [Arabidopsis thaliana]
          Length = 279

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 73/206 (35%), Positives = 119/206 (57%), Gaps = 4/206 (1%)

Query: 4   EGCAKKDSEDVFLGLV--PMVVEQT--NRGERSYDIYSRLLKERIVFVTGQIEDHMATLI 59
            G  K     V +  +  P V  +       +  DI++ L +ER++F+   I++  +  I
Sbjct: 55  SGTGKASRSRVKMMPIGTPRVPYRNREEGTWQWVDIWNALYRERVIFIGQNIDEEFSNQI 114

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
            A +L+L+  +  + I +Y+N PGG +T  +AIYDTM+ +K P+ T C+G A ++   LL
Sbjct: 115 LATMLYLDTLDGSRRIYMYLNGPGGDLTPSLAIYDTMKSLKSPVGTHCVGLAYNLAGFLL 174

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
           +AGEKG RFA+P +RI L  P+G   GQA DI+  A+++ +I+  L     KN G+  E 
Sbjct: 175 AAGEKGHRFAMPLSRIALQSPAGAARGQADDIQNEAKELSRIRDYLFNELAKNTGQPAER 234

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVL 205
           V K L R    +A EA ++G++DK++
Sbjct: 235 VFKDLSRVKRFNAEEAIEYGLIDKIV 260


>gi|50233996|ref|YP_052774.1| ATP-dependent Clp protease proteolytic subunit [Oryza nivara]
 gi|109156611|ref|YP_654230.1| ATP-dependent Clp protease proteolytic subunit [Oryza sativa Indica
           Group]
 gi|68052132|sp|Q6ENE9|CLPP_ORYNI RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|148841130|sp|P0C312|CLPP_ORYSA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|148841131|sp|P0C313|CLPP_ORYSI RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|148841132|sp|P0C314|CLPP_ORYSJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|42795503|gb|AAS46070.1| ATP-dependent Clp protease proteolytic subunit [Oryza sativa Indica
           Group]
 gi|42795570|gb|AAS46136.1| ATP-dependent Clp protease proteolytic subunit [Oryza sativa
           Japonica Group]
 gi|42795634|gb|AAS46199.1| ATP-dependent Clp protease proteolytic subunit [Oryza sativa
           Japonica Group]
 gi|49615020|dbj|BAD26803.1| ATP-dependent Clp protease proteolytic subunit [Oryza nivara]
 gi|290790590|gb|ADD62850.1| clp protease proteolytic subunit [Oryza sativa Japonica Group]
 gi|290790659|gb|ADD62918.1| clp protease proteolytic subunit [Oryza meridionalis]
 gi|290790728|gb|ADD62986.1| clp protease proteolytic subunit [Oryza australiensis]
          Length = 216

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 70/195 (35%), Positives = 110/195 (56%), Gaps = 3/195 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+ + +ER +F+  +I   +   I   +++L  E+   +I 
Sbjct: 5   VPKVPYRIPGDEEATWVDLYNVMYRERTLFLGQEIRCEVTNHITGLMVYLSIEDGISDIF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG + +GMAI+DTMQ + P I T C+G AASM S +L  GE   R A P+ARI+
Sbjct: 65  LFINSPGGWLISGMAIFDTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           LHQP S  +  +  +     +++ K++  +  +Y    GK +  V + ++RD  MSA EA
Sbjct: 125 LHQPASAYYRARTPEFLLEVEELHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEA 184

Query: 196 CDWGVVDKVLMSRID 210
             +G+VD V    +D
Sbjct: 185 KAYGLVDIVGDEMLD 199


>gi|148977888|ref|ZP_01814441.1| ATP-dependent Clp protease proteolytic subunit [Vibrionales
           bacterium SWAT-3]
 gi|145962834|gb|EDK28106.1| ATP-dependent Clp protease proteolytic subunit [Vibrionales
           bacterium SWAT-3]
          Length = 130

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 75/128 (58%), Positives = 99/128 (77%)

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGG VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+ G  G R  LPN+R+++HQP
Sbjct: 1   SPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGTPGKRHVLPNSRVMIHQP 60

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            GGF GQASDI+ HAQ+I+ IK++LN++  ++ G+  E VE+  DRD+ MSA +A ++G+
Sbjct: 61  LGGFQGQASDIQIHAQEILTIKQKLNKLLAEHTGQPLEVVERDTDRDNFMSADQAVEYGL 120

Query: 201 VDKVLMSR 208
           VD VL  R
Sbjct: 121 VDSVLNHR 128


>gi|228017007|gb|ACP51830.1| ATP-dependent Clp protease proteolytic subunit [Pinus canariensis]
 gi|228017448|gb|ACP52264.1| ATP-dependent Clp protease proteolytic subunit [Pinus merkusii]
          Length = 196

 Score =  202 bits (515), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 71/191 (37%), Positives = 114/191 (59%), Gaps = 3/191 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+RL +ER++F+   I   +A  +   +++L AE+  K+I 
Sbjct: 5   VPKVPFRAPGDEDATWVDLYNRLYRERLLFLAQDINHEIANQLMGLMVYLSAEDANKDIF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            +IN PGG V  G+ ++D MQ I P + T CMG AASMGS +L  GE   R ALP+AR++
Sbjct: 65  SFINCPGGSVIPGVGLFDMMQAIVPDVHTICMGVAASMGSFILIGGEMPKRIALPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  + G A+D    ++ +  ++  + + Y++  G+  E +++ L+RD  MSA+EA
Sbjct: 125 IHQPASSYYDGSAADFHNESKHVTMLRDYITKCYIERTGQPGEVIQRDLNRDVFMSATEA 184

Query: 196 CDWGVVDKVLM 206
             +G+VD V  
Sbjct: 185 QAYGIVDVVAE 195


>gi|119493581|ref|ZP_01624245.1| ATP-dependent Clp protease proteolytic subunit [Lyngbya sp. PCC
           8106]
 gi|119452571|gb|EAW33754.1| ATP-dependent Clp protease proteolytic subunit [Lyngbya sp. PCC
           8106]
          Length = 220

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 75/201 (37%), Positives = 117/201 (58%), Gaps = 19/201 (9%)

Query: 34  DIYSRLLKERIVFVT----------GQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           D+ S LLKERIV++            Q+   +  LI AQLL+L+ ++P K I  YINS G
Sbjct: 17  DLESLLLKERIVYLGLPLYSSDDIKRQVGIDVTELIIAQLLYLQFDDPDKPIYFYINSTG 76

Query: 84  GV---------VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
                       T   AI DT+ +IKPP+ T C+GQA    +++LSAG KG R +LP+A 
Sbjct: 77  TSWYGGDAIGFETEAFAICDTISYIKPPVHTICIGQAMGTAAMILSAGTKGYRASLPHAT 136

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           ++L+Q   G  GQA+DI+  A++++  K+   EI  KN G++ E + K  DR   ++   
Sbjct: 137 LILNQAKSGSRGQATDIQIRAKEVLANKQTFLEIMAKNTGQSTERIAKDTDRMFYLTPEA 196

Query: 195 ACDWGVVDKVLMSRIDIEEKS 215
           A ++G++D+VL SR ++ + +
Sbjct: 197 AKEYGLIDRVLQSRKELPKPA 217


>gi|69214835|gb|AAZ03800.1| ATP-depedent Clp protease proteolytic subunit [Ginkgo biloba]
          Length = 201

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 72/188 (38%), Positives = 118/188 (62%), Gaps = 2/188 (1%)

Query: 19  VPMVVEQTNRGERSYDIY-SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           VP V  +    E +  +  +RL +ER++F+  Q++D +A  +   +++   E+  K+I  
Sbjct: 5   VPKVPFRIPGEEDAVWVDVNRLHRERLLFLGQQVDDEIANQLIGIMMYPNGEDENKDIYT 64

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V  G+++YD MQF+ P + T CMG AASMGS + + GE   R ALP+AR+++
Sbjct: 65  YINSPGGTVIPGISLYDAMQFVVPDVHTICMGLAASMGSSVSTGGEITKRIALPHARVMI 124

Query: 138 HQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP S  + GQA +    A++++K++  +  +YV+  GK    + + ++RD  MSA+EA 
Sbjct: 125 HQPASSYYDGQAGECIMEAEEVLKLRDSITNVYVQRTGKPLWVISEDMERDIFMSAAEAQ 184

Query: 197 DWGVVDKV 204
            +G+VD V
Sbjct: 185 AYGIVDLV 192


>gi|326780753|ref|ZP_08240018.1| Endopeptidase Clp [Streptomyces cf. griseus XylebKG-1]
 gi|326661086|gb|EGE45932.1| Endopeptidase Clp [Streptomyces cf. griseus XylebKG-1]
          Length = 201

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 81/193 (41%), Positives = 125/193 (64%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G R+ D YS+LL ERI+F+   I+D  A+ + AQL++LE  +P + +SL
Sbjct: 9   VLPEFTERTATGTRTLDPYSKLLSERIIFLGSPIDDIAASDLIAQLMYLEHADPDRTLSL 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG   A  A+YDTM+F+   + TFC+GQA S  + LL+ G KG R ALP AR+++
Sbjct: 69  YINSPGGTFQAMAAVYDTMRFLTCEVETFCLGQAGSYATALLAGGTKGRRHALPGARVVI 128

Query: 138 HQPSG--GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
            QP+      GQ SD+E HA+++V+ +     + V++ G+T E++   ++RD I+ A  A
Sbjct: 129 QQPAMEEPMRGQPSDLEIHARELVRTREMFAAMLVRDTGRTAEQITADIERDTILDAEAA 188

Query: 196 CDWGVVDKVLMSR 208
              G+VD V+ +R
Sbjct: 189 LAHGLVDHVVANR 201


>gi|183240722|gb|ACC61147.1| ClpP [Agrostemma githago]
          Length = 172

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 68/169 (40%), Positives = 110/169 (65%), Gaps = 1/169 (0%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           +RL +ER++F+  +++  ++  +   +++L  E+  K++ L+INSPGG V  G+AIYDTM
Sbjct: 1   NRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTM 60

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIERHA 155
           QF++P + T CMG AASMGS +L  GE   R A P+AR+++HQP S  +  Q  +    A
Sbjct: 61  QFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFILEA 120

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           ++++K++  L  +YV+  GK    V + ++RD  MSA+EA   G+VD V
Sbjct: 121 EELLKLRETLTRVYVQRTGKPVWVVSEDMERDVFMSAAEAQAHGIVDLV 169


>gi|126348492|emb|CAJ90215.1| putative ATP-dependent Clp protease [Streptomyces ambofaciens ATCC
           23877]
          Length = 211

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 75/192 (39%), Positives = 118/192 (61%), Gaps = 2/192 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
            P   E+ +  +R  D Y++LL+ERIV +   I++  A  + A+LL+LE   P + I+LY
Sbjct: 10  PPEFTERASADDRVVDPYAKLLEERIVLLGTPIDEASANDVTARLLYLEHTAPDRAIALY 69

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           +NSPGG  TA  AIYDTM+ +   + T C+GQA +  ++LL+AG  G R  LP AR++L 
Sbjct: 70  VNSPGGSFTAMTAIYDTMRHVSCDVETTCLGQAGTAAAVLLAAGTPGRRAVLPGARVMLR 129

Query: 139 QPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           QPS      G+  D+   A +  +I+ RL E+ V++ G+T E+V   ++R+ I+ A +A 
Sbjct: 130 QPSLIETVEGRTDDLAVRADESTRIRTRLEELLVRHTGRTPEQVTADIERETILDARQAL 189

Query: 197 DWGVVDKVLMSR 208
           D G+VD ++  R
Sbjct: 190 DHGLVDHIVPGR 201


>gi|297844106|ref|XP_002889934.1| hypothetical protein ARALYDRAFT_471391 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297335776|gb|EFH66193.1| hypothetical protein ARALYDRAFT_471391 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 279

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 73/206 (35%), Positives = 119/206 (57%), Gaps = 4/206 (1%)

Query: 4   EGCAKKDSEDVFLGLV--PMVVEQT--NRGERSYDIYSRLLKERIVFVTGQIEDHMATLI 59
            G  K     V +  +  P V  +       +  DI++ L +ER++F+   I++  +  I
Sbjct: 55  SGTGKASRSRVKMMPIGTPRVPYRNREEGTWQWVDIWNALYRERVIFIGQNIDEEFSNQI 114

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
            A +L+L+  +  + I +Y+N PGG +T  +AIYDTM+ +K P+ T C+G A ++   LL
Sbjct: 115 LATMLYLDTLDDSRRIYMYLNGPGGDLTPSLAIYDTMKSLKSPVGTHCVGLAYNLAGFLL 174

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
           +AGEKG RFA+P +RI L  P+G   GQA DI+  A+++ +I+  L     KN G+  E 
Sbjct: 175 AAGEKGHRFAMPLSRIALQSPAGAARGQADDIQNEAKELSRIRDYLFNELAKNTGQPAER 234

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVL 205
           V K L R    +A EA ++G++DK++
Sbjct: 235 VFKDLSRVKRFNAEEAIEYGLIDKIV 260


>gi|302816621|ref|XP_002989989.1| hypothetical protein SELMODRAFT_130729 [Selaginella moellendorffii]
 gi|300142300|gb|EFJ09002.1| hypothetical protein SELMODRAFT_130729 [Selaginella moellendorffii]
          Length = 203

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 74/190 (38%), Positives = 120/190 (63%), Gaps = 4/190 (2%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           + P V+  T  G    D+ S +L+ RI+F+   I   +A  + +QL+ L A + +K+I L
Sbjct: 16  MAPAVI--TPAGI--ADLTSIMLRSRIIFIGQPINSQVAQRVISQLVMLAAIDEEKDIQL 71

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YIN PGG   + +AIYD M +IKP + T C G AAS G+L+L+ G KG+RFA+PN+R+++
Sbjct: 72  YINCPGGSTYSVLAIYDCMSWIKPRVGTVCFGMAASQGALILAGGTKGLRFAMPNSRVMI 131

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG  G   D+ R   ++V  + +++++Y    G+  E V+   +RDH  SA+EA +
Sbjct: 132 HQPQGGCGGTMEDVRRQVNEVVASRDKIDKMYSAFTGQPLEIVQTYTERDHFFSAAEAME 191

Query: 198 WGVVDKVLMS 207
           +G++D +L +
Sbjct: 192 FGLIDGLLET 201


>gi|58700085|ref|ZP_00374620.1| Clp protease [Wolbachia endosymbiont of Drosophila ananassae]
 gi|58533399|gb|EAL57863.1| Clp protease [Wolbachia endosymbiont of Drosophila ananassae]
          Length = 142

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 101/142 (71%), Positives = 129/142 (90%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P+VVEQT+RGER+YDIYSRL+KERI+FVTG IED+MA++I AQLLFLE+ENP K+I
Sbjct: 1   MTLIPIVVEQTSRGERAYDIYSRLVKERIIFVTGPIEDNMASVIVAQLLFLESENPDKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG++IYDTMQ+I P +ST C+GQAASMGSLLL+AG KG R++LP++RI
Sbjct: 61  CMYINSPGGVVTAGLSIYDTMQYINPDVSTLCIGQAASMGSLLLAAGTKGKRYSLPHSRI 120

Query: 136 LLHQPSGGFSGQASDIERHAQD 157
           ++HQPSGG+ GQA+DIE HA +
Sbjct: 121 MIHQPSGGYHGQATDIEIHANE 142


>gi|237688522|ref|YP_002905140.1| ATP-dependent Clp protease proteolytic subunit [Pinus contorta]
 gi|226875351|gb|ACO89089.1| ATP-dependent Clp protease proteolytic subunit [Pinus contorta]
          Length = 205

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 73/191 (38%), Positives = 116/191 (60%), Gaps = 3/191 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+RL +ER++F+   I + +A  +   +++L AE+  KEI 
Sbjct: 5   VPKVPFRAPGDEDATWVDLYNRLYRERLLFLAQDINNEIANQLMGLMVYLSAEDANKEIF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            +IN PGG V  G+ ++D MQ I P ++T CMG AASMGS +L  GE   R ALP+AR++
Sbjct: 65  SFINCPGGSVIPGVGLFDMMQAIVPDVNTICMGVAASMGSFILIGGEMPKRIALPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  + G A+D    ++ +  ++  + E Y++  G+  E +++ L+RD  MSA+EA
Sbjct: 125 IHQPASSYYDGSAADFHNESKHVTLLREYITECYIERTGQPEEVIQRDLNRDVFMSATEA 184

Query: 196 CDWGVVDKVLM 206
             +G+VD V  
Sbjct: 185 QAYGIVDVVAE 195


>gi|220906938|ref|YP_002482249.1| ATP-dependent Clp protease-like protein [Cyanothece sp. PCC 7425]
 gi|219863549|gb|ACL43888.1| Endopeptidase Clp [Cyanothece sp. PCC 7425]
          Length = 218

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 73/178 (41%), Positives = 111/178 (62%), Gaps = 9/178 (5%)

Query: 41  KERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS---------PGGVVTAGMA 91
           KERIV++   +   +  LI A+LLFL+ ++P+K I +YINS         P G  T   A
Sbjct: 31  KERIVYLGMPLVPAVTELIIAELLFLQYDDPEKPIKIYINSTGTSRYDGEPIGFETEAFA 90

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           I DTM++IKPPI T C+GQA  M ++LLSAG KG R +LPNA I+LHQ      GQA+DI
Sbjct: 91  ICDTMRYIKPPIHTICIGQAMGMAAMLLSAGTKGCRASLPNATIVLHQTRSYARGQATDI 150

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           +  A++++  +  + +I  +N G+  E++ K +DR   M+  +A ++G++D+VL    
Sbjct: 151 QIRAREVLANREIMIDILSRNTGQPPEKISKDMDRLFYMTPQQAVEYGLIDRVLEKEA 208


>gi|228016444|gb|ACP51276.1| ATP-dependent Clp protease proteolytic subunit [Pinus torreyana
           subsp. insularis]
 gi|228016508|gb|ACP51339.1| ATP-dependent Clp protease proteolytic subunit [Pinus torreyana
           subsp. torreyana]
          Length = 196

 Score =  202 bits (513), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 71/191 (37%), Positives = 113/191 (59%), Gaps = 3/191 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+RL +ER++F+   I   +A  +   +++L AE+  K+I 
Sbjct: 5   VPKVPFRAPGDEDATWVDLYNRLYRERLLFLAQDINHEIANQLIGLMVYLSAEDANKDIF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            +IN PGG V  G+ ++D MQ I P + T CMG AASMGS +L  GE   R ALP+AR++
Sbjct: 65  SFINCPGGSVIPGVGLFDMMQAIVPDVHTICMGVAASMGSFILIGGEMPKRIALPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  + G A+D    ++ +  ++  + + Y++  G   E +++ L+RD  MSA+EA
Sbjct: 125 IHQPASSYYDGSAADFHNESKHVTMLRDYITKCYIERTGHPGEVIQRDLNRDVFMSATEA 184

Query: 196 CDWGVVDKVLM 206
             +G+VD V  
Sbjct: 185 QAYGIVDVVAE 195


>gi|91216523|ref|ZP_01253489.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Psychroflexus
           torquis ATCC 700755]
 gi|91185317|gb|EAS71694.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Psychroflexus
           torquis ATCC 700755]
          Length = 182

 Score =  202 bits (513), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 88/178 (49%), Positives = 120/178 (67%), Gaps = 1/178 (0%)

Query: 29  GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTA 88
           G+    I  + L+ER VF+ GQ++   A  I  +L++L+ E+   EI  YINSPGG VT 
Sbjct: 6   GKVQDLIDKKFLEERKVFLNGQVDGKSAKHIIDRLMYLDMESND-EIQFYINSPGGYVTD 64

Query: 89  GMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQA 148
           G AIYDTM+ +K P+ST C G AASMGS+L+S GEKG RF  P+A+I++HQP GG  GQA
Sbjct: 65  GFAIYDTMKGLKSPVSTICCGLAASMGSILMSGGEKGKRFIQPHAKIMIHQPMGGAQGQA 124

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           S+IE  A++I+KIK    +I   NCG+  ++V K   RDH M A E+ D+G+VD +L 
Sbjct: 125 SNIEIQAKEILKIKELSAKILADNCGQDLDKVMKDFKRDHWMDAQESSDYGIVDGILS 182


>gi|297608276|ref|NP_001061378.2| Os08g0252200 [Oryza sativa Japonica Group]
 gi|40253575|dbj|BAD05521.1| putative ATP-dependent Clp protease proteolytic subunit [Oryza
           sativa Japonica Group]
 gi|255678293|dbj|BAF23292.2| Os08g0252200 [Oryza sativa Japonica Group]
          Length = 216

 Score =  202 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 70/195 (35%), Positives = 109/195 (55%), Gaps = 3/195 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+ + +ER +F+  +I   +   I   +++L  E+   +I 
Sbjct: 5   VPKVPYRIPGDEEATWVDLYNVMYRERTLFLGQEIRCEVTNHITGLMVYLSIEDGISDIF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG + +GMAI DTMQ + P I T C+G AASM S +L  GE   R A P+ARI+
Sbjct: 65  LFINSPGGWLISGMAICDTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           LHQP S  +  +  +     +++ K++  +  +Y    GK +  V + ++RD  MSA EA
Sbjct: 125 LHQPASAYYRARTPEFLLEVEELHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEA 184

Query: 196 CDWGVVDKVLMSRID 210
             +G+VD V    +D
Sbjct: 185 KAYGLVDIVGDEMLD 199


>gi|224074500|ref|XP_002304381.1| predicted protein [Populus trichocarpa]
 gi|222841813|gb|EEE79360.1| predicted protein [Populus trichocarpa]
          Length = 220

 Score =  202 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 78/174 (44%), Positives = 116/174 (66%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D    LL+ERIVF+   I+D +A  I +QLL L+A++P K+I L++N PGG ++A MAIY
Sbjct: 7   DAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNCPGGSLSASMAIY 66

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D +Q ++  +ST  +G +AS  S++L  G KG RFA+PN RI++HQP GG SGQA D+E 
Sbjct: 67  DVVQLVRADVSTIALGISASTASIILGGGTKGKRFAMPNTRIMIHQPLGGASGQAIDVEI 126

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
            A++I+  K  +  I      +T E+V+K +DRD  MS  EA ++G++D V+  
Sbjct: 127 QAREIMHNKNNIIRIVSGFTSRTVEQVQKDMDRDRYMSPIEAVEYGIIDGVIDR 180


>gi|75907529|ref|YP_321825.1| ATP-dependent Clp protease-like protein [Anabaena variabilis ATCC
           29413]
 gi|75701254|gb|ABA20930.1| Peptidase S14, ClpP [Anabaena variabilis ATCC 29413]
          Length = 220

 Score =  202 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 74/176 (42%), Positives = 111/176 (63%), Gaps = 9/176 (5%)

Query: 41  KERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS---------PGGVVTAGMA 91
           KERIV++   +   +  LI AQLL+L++++P K I +YINS         P G  T   A
Sbjct: 32  KERIVYLGMPLVPAVTELIVAQLLYLQSDDPDKPIKIYINSTGTSGYSGEPIGFETEAFA 91

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYDTM++IKPPI T C+G A  M ++LLSAG KG R +LPNA I+LHQP     GQA+DI
Sbjct: 92  IYDTMKYIKPPIHTICIGSAMGMAAMLLSAGTKGCRASLPNASIILHQPKSYAQGQATDI 151

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           +  A++++  K  + +I+ +  G+  E++ K +DR   M+  +A D+G++D+V   
Sbjct: 152 QIRAREVLVNKGSMVDIFARTTGQAPEKITKDMDRLLYMTPYQAKDYGLIDRVFEK 207


>gi|11466814|ref|NP_039410.1| ATP-dependent Clp protease proteolytic subunit [Oryza sativa
           Japonica Group]
 gi|12012|emb|CAA33972.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|226633|prf||1603356BG ORF 216
          Length = 216

 Score =  202 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 70/195 (35%), Positives = 110/195 (56%), Gaps = 3/195 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+ + +ER +F+  +I   +   I   +++L  E+   +I 
Sbjct: 5   VPKVPYRIPGDEEATWVDLYNVMYRERTLFLGQEIRCEVTNHITGLMVYLSIEDGSSDIF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG + +GMAI+DTMQ + P I T C+G AASM S +L  GE   R A P+ARI+
Sbjct: 65  LFINSPGGWLISGMAIFDTMQTVTPNIYTTCLGIAASMPSFILLGGEPTKRIAFPHARIM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           LHQP S  +  +  +     +++ K++  +  +Y    GK +  V + ++RD  MSA EA
Sbjct: 125 LHQPASAYYRARTPEFLLEVEELHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEA 184

Query: 196 CDWGVVDKVLMSRID 210
             +G+VD V    +D
Sbjct: 185 KAYGLVDIVGDEMLD 199


>gi|194033171|ref|YP_002000510.1| ATP-dependent Clp protease proteolytic subunit [Brachypodium
           distachyon]
 gi|193075579|gb|ACF08662.1| ATP-dependent protease proteolytic subunit [Brachypodium
           distachyon]
          Length = 216

 Score =  202 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 70/189 (37%), Positives = 108/189 (57%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  Q    E     D+Y+ + +ER +F+  +I   +   I   +++L  E+   +I 
Sbjct: 5   VPKVPYQIPGDEEATWVDLYNVMYRERTLFLGQEIRCEITNHITGLMVYLSIEDGISDIF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG + +GMAI+DTMQ + P I T C+G AASM S +L  GE   R A P+ARI+
Sbjct: 65  LFINSPGGWLISGMAIFDTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           LHQP S  +  +  +     +++ K++  +  +Y    GK +  V + ++RD  MSA EA
Sbjct: 125 LHQPASAYYRARTPEFLLEVEELHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEA 184

Query: 196 CDWGVVDKV 204
             +G+VD V
Sbjct: 185 KAYGLVDIV 193


>gi|183240726|gb|ACC61150.1| ClpP [Atocion rupestre]
 gi|183240730|gb|ACC61153.1| ClpP [Viscaria vulgaris]
 gi|183240734|gb|ACC61156.1| ClpP [Petrocoptis pyrenaica]
          Length = 172

 Score =  202 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 68/169 (40%), Positives = 110/169 (65%), Gaps = 1/169 (0%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           +RL +ER++F+  +++  ++  +   +++L  E+  K++ L+INSPGG V  G+AIYDTM
Sbjct: 1   NRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTM 60

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIERHA 155
           QF++P + T CMG AASMGS +L  GE   R A P+AR+++HQP S  +  Q  +    A
Sbjct: 61  QFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFILEA 120

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           ++++K++  L  +YV+  GK    V + ++RD  MSA+EA   G+VD V
Sbjct: 121 EELLKLRETLTRVYVQRTGKPIWVVSEDMERDVFMSAAEAQAHGIVDLV 169


>gi|78212385|ref|YP_381164.1| ATP-dependent Clp protease-like protein [Synechococcus sp. CC9605]
 gi|78196844|gb|ABB34609.1| Endopeptidase Clp [Synechococcus sp. CC9605]
          Length = 225

 Score =  201 bits (512), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 77/191 (40%), Positives = 115/191 (60%), Gaps = 19/191 (9%)

Query: 41  KERIVFVT----------GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV----- 85
           KERIV++            Q+   +  LI AQLL+LE +NP+K I  YINS G       
Sbjct: 30  KERIVYLGLPLFSDDDAKRQMGIDVTELIIAQLLYLEFDNPEKPIYFYINSTGTSWYSGE 89

Query: 86  ----VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
                T   AI DT++++KPP+ T C+GQA    +++LSAG KG R ALPN+ I+LHQP 
Sbjct: 90  AIGFETEAFAICDTLRYVKPPVHTICIGQAMGTAAVILSAGTKGQRAALPNSSIVLHQPR 149

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            G  GQA+DI+  A++++  K+ + EI   N G++ EE+ K  DR   ++  +A ++G++
Sbjct: 150 SGARGQATDIQIRAKEVLHNKQAMLEILSTNTGRSVEELSKDSDRMSYLTPQQAVEYGLI 209

Query: 202 DKVLMSRIDIE 212
           D+VL SR D+ 
Sbjct: 210 DRVLSSRKDLP 220


>gi|326496965|dbj|BAJ98509.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 146

 Score =  201 bits (512), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 65/134 (48%), Positives = 96/134 (71%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I +Y+NSPGG VTAGMAI+DTM+ I+P +ST C+G AASMG+ LLS G KG R++LPN+
Sbjct: 1   DIIMYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCIGLAASMGAFLLSGGTKGKRYSLPNS 60

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           RI++HQP GG  GQ +D+E  A +++  K  LN     + G+  +++    DRD  MSA 
Sbjct: 61  RIMIHQPLGGAQGQETDLEIQANEMLHHKANLNGYLAYHTGQPLDKINVDTDRDFFMSAK 120

Query: 194 EACDWGVVDKVLMS 207
           EA ++G++D V+++
Sbjct: 121 EAKEYGLIDGVIVN 134


>gi|239932647|ref|ZP_04689600.1| ATP-dependent Clp protease [Streptomyces ghanaensis ATCC 14672]
 gi|291441006|ref|ZP_06580396.1| ATP-dependent Clp protease [Streptomyces ghanaensis ATCC 14672]
 gi|291343901|gb|EFE70857.1| ATP-dependent Clp protease [Streptomyces ghanaensis ATCC 14672]
          Length = 211

 Score =  201 bits (512), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 76/193 (39%), Positives = 123/193 (63%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P + E+T  G R+ D Y++LL+ERIV +   I++  A  + AQ L+LE   P ++ISL
Sbjct: 9   VLPELTERTASGHRTTDPYAKLLQERIVLLGTPIDETSANDVMAQFLYLEHRAPDRDISL 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+NSPGG   A   IYDT++F+   + T C+G+A    +LLL+AG  G R  LP AR++L
Sbjct: 69  YVNSPGGSFHAMSTIYDTLRFVSCDVETVCLGRAEGTAALLLAAGTPGKRCVLPGARLVL 128

Query: 138 HQ--PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
            Q  PSG   G+ASD+   A+++ +I+ R+ ++ V++ G+T E+    L+RD ++ A  A
Sbjct: 129 RQPDPSGPLEGRASDLAARAEELGRIRSRMEDMLVRHAGRTPEQARADLERDTVLDARAA 188

Query: 196 CDWGVVDKVLMSR 208
            D G+ D+++  R
Sbjct: 189 VDHGLADRIVPDR 201


>gi|158335483|ref|YP_001516655.1| ATP-dependent Clp protease-like protein [Acaryochloris marina
           MBIC11017]
 gi|158305724|gb|ABW27341.1| ATP-dependent Clp protease, proteolytic subunit ClpP, putative
           [Acaryochloris marina MBIC11017]
          Length = 228

 Score =  201 bits (512), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 81/198 (40%), Positives = 117/198 (59%), Gaps = 19/198 (9%)

Query: 34  DIYSRLLKERIVFVTG----------QIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           D+ S LLKERIV++            Q+   +  LI AQLLFL+ ++P K I  YINS G
Sbjct: 26  DLQSLLLKERIVYLGMPLFSSDDIKRQVGFDVTELIIAQLLFLQFDDPDKPIFFYINSTG 85

Query: 84  GV---------VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
                       T   AI DTM +IKPP+ T C+GQA    +++LSAG KG R +L +A 
Sbjct: 86  TSWYGGDAIGFETEAFAICDTMSYIKPPVHTICIGQAMGTAAMILSAGTKGYRASLGHAT 145

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I+L+Q   G  GQASDI+  AQ+++  K  + +I  KN G+T E++ K +DR   +S  E
Sbjct: 146 IVLNQARSGAQGQASDIQIRAQEVLANKATMLDILQKNTGQTAEKISKDMDRMFYLSPEE 205

Query: 195 ACDWGVVDKVLMSRIDIE 212
           A D+G++D+VL S+ ++ 
Sbjct: 206 AKDYGLIDRVLASQKELP 223


>gi|253729580|ref|YP_003029763.1| ClpP [Bambusa oldhamii]
 gi|246367090|gb|ACS94701.1| ClpP [Bambusa oldhamii]
 gi|307697231|gb|ADN86070.1| clp protease proteolytic subunit [Chasmanthium latifolium]
          Length = 216

 Score =  201 bits (512), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 71/195 (36%), Positives = 110/195 (56%), Gaps = 3/195 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+ + +ER +F+  +I   +   I   +++L  E+   +I 
Sbjct: 5   VPKVPYRIPGDEEATWVDLYNVMYRERTLFLGQEIRCEITNHITGLMVYLSIEDGISDIF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG + +GMAI+DTMQ + P I T C+G AASM S +L  GE   R A P+ARI+
Sbjct: 65  LFINSPGGWLISGMAIFDTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           LHQP S  +  +  +     +++ K++  +  +Y    GK +  V + ++RD  MSA EA
Sbjct: 125 LHQPASAYYRARTPEFLLEVEELHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEA 184

Query: 196 CDWGVVDKVLMSRID 210
             +G+VD V    ID
Sbjct: 185 KAYGLVDIVGDEMID 199


>gi|159106888|ref|YP_001531306.1| clp protease proteolytic subunit [Lolium perenne]
 gi|158934422|emb|CAO86000.1| clp protease proteolytic subunit [Lolium perenne]
          Length = 216

 Score =  201 bits (512), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 71/195 (36%), Positives = 110/195 (56%), Gaps = 3/195 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+ + +ER +F+  +I   +   I   +++L  E+   +I 
Sbjct: 5   VPKVPYRIPGDEEATWVDLYNVMYRERTLFLGQEIRCEITNHITGLMVYLSIEDGISDIF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG + +GMAI+DTMQ + P I T C+G AASM S +L  GE   R A P+ARI+
Sbjct: 65  LFINSPGGWLISGMAIFDTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           LHQP S  +  +  +     +++ K++  +  +Y    GK +  V + ++RD  MSA EA
Sbjct: 125 LHQPASAYYRARTPEFLLEVEELHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEA 184

Query: 196 CDWGVVDKVLMSRID 210
             +G+VD V    ID
Sbjct: 185 KAYGLVDIVGDEMID 199


>gi|290790797|gb|ADD63054.1| clp protease proteolytic subunit [Potamophila parviflora]
          Length = 216

 Score =  201 bits (512), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 70/195 (35%), Positives = 109/195 (55%), Gaps = 3/195 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+ + +ER +F+  +I   +   I   +++L  E+   +I 
Sbjct: 5   VPKVPYRIPGDEEATWVDLYNVMYRERTLFLGQEIRCEVTNHITGLMVYLSIEDGISDIF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            +INSPGG + +GMAI+DTMQ + P I T C+G AASM S +L  GE   R A P+ARI+
Sbjct: 65  FFINSPGGWLISGMAIFDTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           LHQP S  +  +  +     +++ K++  +  +Y    GK +  V + ++RD  MSA EA
Sbjct: 125 LHQPASAYYRARTPEFLLEVEELHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEA 184

Query: 196 CDWGVVDKVLMSRID 210
             +G+VD V    ID
Sbjct: 185 KAYGLVDIVGDEMID 199


>gi|157325555|ref|YP_001468333.1| ATP-dependent Clp protease proteolytic subunit [Ipomoea purpurea]
 gi|157056783|gb|ABV02373.1| clp protease proteolytic subunit [Ipomoea purpurea]
          Length = 204

 Score =  201 bits (512), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 73/189 (38%), Positives = 114/189 (60%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     DIY+RL +ER +F+  +I+  +A  I   L++L  E+  K+I 
Sbjct: 5   VPKVPFRNPGDEDASWIDIYNRLYRERFLFLVQEIDSEIANQIVGLLVYLNIEDDTKDIF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG V +G+AIYD MQ ++P +ST C+G AASMGS +L+ G    R A P+AR++
Sbjct: 65  LYINSPGGDVISGVAIYDMMQTVRPGVSTICIGLAASMGSFILAGGAITRRAAFPHARVM 124

Query: 137 LHQPSG-GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP    F   A ++    ++ +K++ R+ EIY +  G     + + +DRD   SA +A
Sbjct: 125 IHQPRTSFFESHAGELLLEMKEALKLRERIAEIYAQRTGNPTSIISRDMDRDVFFSARQA 184

Query: 196 CDWGVVDKV 204
             +G++D +
Sbjct: 185 RIYGIIDDI 193


>gi|118430411|ref|YP_874677.1| clp protease proteolytic subunit [Hordeum vulgare subsp. vulgare]
 gi|126302533|sp|P48883|CLPP_HORVU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|118201065|gb|ABK79436.1| clp protease proteolytic subunit [Hordeum vulgare subsp. vulgare]
          Length = 216

 Score =  201 bits (512), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 71/195 (36%), Positives = 110/195 (56%), Gaps = 3/195 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+ + +ER +F+  +I   +   I   +++L  E+   +I 
Sbjct: 5   VPKVPYRIPGDEEATWVDLYNVMYRERTLFLGQEIRCEITNHITGLMVYLSIEDGISDIF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG + +GMAI+DTMQ + P I T C+G AASM S +L  GE   R A P+ARI+
Sbjct: 65  LFINSPGGWLISGMAIFDTMQTVTPDIYTICLGIAASMASFILLGGEPAKRIAFPHARIM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           LHQP S  +  +  +     +++ K++  +  +Y    GK +  V + ++RD  MSA EA
Sbjct: 125 LHQPASAYYRARTPEFLLEVEELHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEA 184

Query: 196 CDWGVVDKVLMSRID 210
             +G+VD V    ID
Sbjct: 185 KAYGLVDIVGDEMID 199


>gi|254421954|ref|ZP_05035672.1| Clp protease [Synechococcus sp. PCC 7335]
 gi|196189443|gb|EDX84407.1| Clp protease [Synechococcus sp. PCC 7335]
          Length = 230

 Score =  201 bits (512), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 75/198 (37%), Positives = 117/198 (59%), Gaps = 19/198 (9%)

Query: 34  DIYSRLLKERIVFVTG----------QIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           D+ S LLKERIV++            Q+   +  LI AQLL+LE ++P+K I  YINS G
Sbjct: 25  DLQSLLLKERIVYLGTPLVSSDDFKRQMGVDVTKLIIAQLLYLEFDDPEKPIYFYINSTG 84

Query: 84  GV---------VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
                       T   AI DT+++IKPP+ T C+GQA    +++LS+G KG R +LP+A 
Sbjct: 85  TSWYTGDAVGFETEAFAICDTLKYIKPPVHTICLGQAMGTAAMILSSGAKGSRASLPHAT 144

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I+L+Q   G  GQA+DI+  A++++  K    +I   N G++ E+++K  DR   ++  E
Sbjct: 145 IVLNQTRSGAQGQATDIQIRAEEVLANKAAQLDILSANTGQSTEKLDKDTDRMFYLTPEE 204

Query: 195 ACDWGVVDKVLMSRIDIE 212
           A D+G++D+VL S  ++ 
Sbjct: 205 AKDYGLIDRVLSSTKELP 222


>gi|307104278|gb|EFN52533.1| hypothetical protein CHLNCDRAFT_49097 [Chlorella variabilis]
          Length = 202

 Score =  201 bits (511), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 66/192 (34%), Positives = 118/192 (61%), Gaps = 3/192 (1%)

Query: 19  VPMVVEQTNRG--ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +T +    +  DI++ L +ERI+F++  +++ +   + A +L+L++E  +K+++
Sbjct: 5   VPRVPYRTPKEGSWQWVDIWNCLYRERIIFLSKPVDEELGNQLVATMLYLDSE-NKKDMN 63

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YIN  GG V   +AI+DTM+ IK  + T   G    M   LL+ G+KG R AL N RI+
Sbjct: 64  IYINCSGGEVVPCLAIHDTMRHIKSDVGTVGFGGCMGMSGFLLAVGKKGKRSALQNTRIM 123

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +H PSG   GQASDI R A+++++I+  ++ I  +  G+ +++V +   R+     SEA 
Sbjct: 124 VHHPSGAARGQASDINREARELLRIRDYMDNILAQATGQPFDKVAQDFSRNCYFDTSEAQ 183

Query: 197 DWGVVDKVLMSR 208
           ++G++D ++  R
Sbjct: 184 EYGLIDNIVRPR 195


>gi|14017596|ref|NP_114282.1| ATP-dependent Clp protease proteolytic subunit [Triticum aestivum]
 gi|17374148|sp|P24064|CLPP_WHEAT RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|13928229|dbj|BAB47058.1| ATP-dependent protease proteolytic subunit [Triticum aestivum]
          Length = 216

 Score =  201 bits (511), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 71/195 (36%), Positives = 110/195 (56%), Gaps = 3/195 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+ + +ER +F+  +I   +   I   +++L  E+   +I 
Sbjct: 5   VPKVPYRIPGDEEATWVDLYNVMYRERTLFLGQEIRCEITNHITGLMVYLSIEDGISDIF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG + +GMAI+DTMQ + P I T C+G AASM S +L  GE   R A P+ARI+
Sbjct: 65  LFINSPGGWLISGMAIFDTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           LHQP S  +  +  +     +++ K++  +  +Y    GK +  V + ++RD  MSA EA
Sbjct: 125 LHQPASAYYRARTPEFLLEVEELHKVREMITRVYAVRTGKPFWVVSEDMERDVFMSADEA 184

Query: 196 CDWGVVDKVLMSRID 210
             +G+VD V    ID
Sbjct: 185 KAYGLVDIVGDEMID 199


>gi|298252719|ref|ZP_06976513.1| ATP-dependent Clp protease, protease subunit [Gardnerella vaginalis
           5-1]
 gi|297533083|gb|EFH71967.1| ATP-dependent Clp protease, protease subunit [Gardnerella vaginalis
           5-1]
          Length = 224

 Score =  201 bits (511), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 83/193 (43%), Positives = 132/193 (68%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   EQT  G ++ D Y++L ++RI+F+  Q++D  A  I AQLL LE+ +  +++ +
Sbjct: 32  VLPQFGEQTPYGMKTQDPYTKLFEDRIIFMGVQVDDTSADDIMAQLLVLESMDSDRDVMM 91

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQ+I P + T C+GQAAS  +++L+AG  G R  LPNAR+L+
Sbjct: 92  YINSPGGSMTAMTAIYDTMQYINPDVQTVCLGQAASAAAIILAAGAAGKRMILPNARVLI 151

Query: 138 HQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+ G   G+A++IE  A+++++++  L     K+ G+  E + K ++ D I++ASEA 
Sbjct: 152 HQPAMGQDFGKATEIELQAKEMLRLRSWLESTLAKHTGQDIERIRKDIEVDTILTASEAK 211

Query: 197 DWGVVDKVLMSRI 209
            +G+VD+VL  R 
Sbjct: 212 AYGMVDEVLERRA 224


>gi|118430326|ref|YP_874761.1| clp protease proteolytic subunit [Agrostis stolonifera]
 gi|125863779|sp|A1EA33|CLPP_AGRST RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|118201235|gb|ABK79604.1| clp protease proteolytic subunit [Agrostis stolonifera]
          Length = 216

 Score =  201 bits (511), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 70/195 (35%), Positives = 111/195 (56%), Gaps = 3/195 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+ + +ER +F+  +I   +   I   +++L  E+   +I 
Sbjct: 5   VPKVPYRIPGDEEATWVDLYNVMYRERTLFLGQEIRCEITNHITGLMVYLSIEDGISDIF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG + +GMAI+DTMQ + P I T C+G AASM S +L  GE   R A P+ARI+
Sbjct: 65  LFINSPGGWLISGMAIFDTMQTVTPDIYTICLGVAASMASFVLIGGEPTKRIAFPHARIM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           LHQP S  +  +  +     +++ K++  + ++Y    GK +  V + ++RD  MSA EA
Sbjct: 125 LHQPASAYYRARTPEFLLEVEELHKVREMITKVYALRTGKPFWVVSEDMERDVFMSADEA 184

Query: 196 CDWGVVDKVLMSRID 210
             +G+VD V    +D
Sbjct: 185 KAYGLVDIVGDEMVD 199


>gi|255961406|ref|YP_003097599.1| Clp protease proteolytic subunit [Dendrocalamus latiflorus]
 gi|255040283|gb|ACT99943.1| Clp protease proteolytic subunit [Dendrocalamus latiflorus]
          Length = 216

 Score =  201 bits (511), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 71/195 (36%), Positives = 110/195 (56%), Gaps = 3/195 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+ + +ER +F+  +I   +   I   +++L  E+   +I 
Sbjct: 5   VPKVPYRIPGDEEATWVDLYNVMYRERTLFLGQEIRCEITNHITGLMVYLSIEDGISDIF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG + +GMAI+DTMQ + P I T C+G AASM S +L  GE   R A P+ARI+
Sbjct: 65  LFINSPGGWLISGMAIFDTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           LHQP S  +  +  +     +++ K++  +  +Y    GK +  V + ++RD  MSA EA
Sbjct: 125 LHQPASAYYRARTPEFFLEVEELHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEA 184

Query: 196 CDWGVVDKVLMSRID 210
             +G+VD V    ID
Sbjct: 185 KAYGLVDIVGDEMID 199


>gi|194476907|ref|YP_002049086.1| Clp protease proteolytic subunit [Paulinella chromatophora]
 gi|171191914|gb|ACB42876.1| Clp protease proteolytic subunit [Paulinella chromatophora]
          Length = 225

 Score =  201 bits (511), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 75/208 (36%), Positives = 125/208 (60%), Gaps = 7/208 (3%)

Query: 2   SFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYS--RLLKERIVFVTGQIEDHMATLI 59
           +FE     DS + +  L+     ++ +G     +YS  +  ++RI+ ++ ++ D  A+ I
Sbjct: 19  TFEKMQSLDSSNNYSPLLEQEYRESVKG-----LYSIPKNTEDRIILISEEMNDEDASDI 73

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
            AQLL LEAENP ++I +YIN  GG +   + IYDTMQ IKP + T C G A  M   LL
Sbjct: 74  IAQLLMLEAENPDEDIQVYINCMGGSMYGFVGIYDTMQAIKPDVVTLCYGSAFEMSGFLL 133

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
           S G KG R ALPNARI+L+QP   F G  +D++ + ++++ +++ +  +   + G+ +E+
Sbjct: 134 SGGAKGKRLALPNARIMLNQPETSFYGCITDLQLYNKELMLMRKNICSLIAAHTGQRFEK 193

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVLMS 207
           V    +RD   SA+EA ++G++D++L  
Sbjct: 194 VTADTNRDQFFSAAEAIEYGLIDRILNK 221


>gi|115466260|ref|NP_001056729.1| Os06g0136800 [Oryza sativa Japonica Group]
 gi|55296987|dbj|BAD68462.1| putative ATP-dependent Clp protease proteolytic subunit [Oryza
           sativa Japonica Group]
 gi|113594769|dbj|BAF18643.1| Os06g0136800 [Oryza sativa Japonica Group]
 gi|215692474|dbj|BAG87894.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215704676|dbj|BAG94304.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215737501|dbj|BAG96631.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218197521|gb|EEC79948.1| hypothetical protein OsI_21540 [Oryza sativa Indica Group]
 gi|222634917|gb|EEE65049.1| hypothetical protein OsJ_20046 [Oryza sativa Japonica Group]
          Length = 297

 Score =  201 bits (511), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 73/215 (33%), Positives = 122/215 (56%), Gaps = 7/215 (3%)

Query: 5   GCAKKDSEDVFLGLVP----MVVEQTNR--GERSYDIYSRLLKERIVFVTGQIEDHMATL 58
           G + K +    + ++P     V  +T      +  DI++ L +ERI+F+   I++  +  
Sbjct: 68  GLSNKRATRARISMMPVGTPRVPYRTPGEGTWQWLDIWNALYRERIIFIGDSIDEEFSNQ 127

Query: 59  ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLL 118
           + A +L+L++ +  K+I LYIN PGG +T  MA+YDTM  +K PI T C+G A ++   +
Sbjct: 128 VLASMLYLDSVDNTKKILLYINGPGGDLTPCMALYDTMLSLKSPIGTHCLGFAFNLAGFI 187

Query: 119 LSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYE 178
           L+AGEKG R  +P  RI L  P+G   GQA DIE  A ++++IK  L     ++ G   +
Sbjct: 188 LAAGEKGSRTGMPLCRISLQSPAGAARGQADDIENEANELIRIKNYLYSKLSEHTGHPVD 247

Query: 179 EVEKTLDRDHIMSASEACDWGVVDKVLM-SRIDIE 212
           ++ + L R     A  A ++G++D+++  SRI  E
Sbjct: 248 KIHEDLSRVKRFDAEGALEYGIIDRIIRPSRIKKE 282


>gi|56751581|ref|YP_172282.1| ATP-dependent Clp protease-like protein [Synechococcus elongatus
           PCC 6301]
 gi|81301347|ref|YP_401555.1| ATP-dependent Clp protease-like protein [Synechococcus elongatus
           PCC 7942]
 gi|18203214|sp|Q9L4P4|CLPR_SYNE7 RecName: Full=Putative ATP-dependent Clp protease proteolytic
           subunit-like; AltName: Full=Endopeptidase Clp-like
 gi|7264063|emb|CAB81780.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus
           elongatus PCC 7942]
 gi|56686540|dbj|BAD79762.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus
           elongatus PCC 6301]
 gi|81170228|gb|ABB58568.1| Endopeptidase Clp [Synechococcus elongatus PCC 7942]
          Length = 228

 Score =  201 bits (511), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 74/191 (38%), Positives = 114/191 (59%), Gaps = 19/191 (9%)

Query: 41  KERIVFVTG----------QIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV----- 85
           KERI+++            Q+   +  LI AQLL+LE +NP+K I  YINS G       
Sbjct: 31  KERIIYLGMPLFSSDDVKRQVGFDVTELIIAQLLYLEFDNPEKPIYFYINSTGTSWYTGD 90

Query: 86  ----VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
                T   AI DTM++IKPP+ T C+GQA    +++LS G  G R +LP+A I+L+QP 
Sbjct: 91  AIGYETEAFAICDTMRYIKPPVHTICIGQAMGTAAMILSGGTPGNRASLPHATIVLNQPR 150

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            G  GQASDI+  A++++  KR + EI+ +N G+  + + +  DR   M+ ++A ++G++
Sbjct: 151 TGAQGQASDIQIRAKEVLANKRTMLEIFARNTGQDPDRLARDTDRMLYMTPAQAVEYGLI 210

Query: 202 DKVLMSRIDIE 212
           D+VL SR D+ 
Sbjct: 211 DRVLDSRKDLP 221


>gi|195612324|gb|ACG27992.1| ATP-dependent Clp protease proteolytic subunit 2 [Zea mays]
 gi|238007600|gb|ACR34835.1| unknown [Zea mays]
          Length = 292

 Score =  200 bits (510), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 75/218 (34%), Positives = 121/218 (55%), Gaps = 6/218 (2%)

Query: 1   MSFEGCAKKDSEDVFLGL---VPMVVEQTNR--GERSYDIYSRLLKERIVFVTGQIEDHM 55
           +S     KK +      +    P V  +T      +  DI++ L +ERI+F+   I++  
Sbjct: 60  ISLRLSKKKATRARISMMPIGTPRVPYRTPGEGTWQWLDIWNALYRERIIFIGDNIDEEF 119

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMG 115
           +  + A +L+L++ +  K+I LYIN PGG +T  MA+YDTM  +K PI T C+G A ++ 
Sbjct: 120 SNQVLASMLYLDSIDNSKKIMLYINGPGGDLTPCMALYDTMLSLKSPIGTHCLGFAFNLA 179

Query: 116 SLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK 175
             +L+AGEKG R  +P  RI L  P+G   GQA DIE  A ++++IK  L      + G 
Sbjct: 180 GFILAAGEKGSRTGMPLCRISLQSPAGAARGQADDIENEANELIRIKNYLYGKLAGHTGH 239

Query: 176 TYEEVEKTLDRDHIMSASEACDWGVVDKVLM-SRIDIE 212
           + E++ + L R     A  A ++G++D+++  SRI  E
Sbjct: 240 SVEKIHEDLSRVKRFDAEGALEYGIIDRIVRPSRIKKE 277


>gi|162463534|ref|NP_001106056.1| LOC100125655 [Zea mays]
 gi|150256106|gb|ABR68025.1| PL5L15 [Zea mays]
          Length = 292

 Score =  200 bits (510), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 75/218 (34%), Positives = 121/218 (55%), Gaps = 6/218 (2%)

Query: 1   MSFEGCAKKDSEDVFLGL---VPMVVEQTNR--GERSYDIYSRLLKERIVFVTGQIEDHM 55
           +S     KK +      +    P V  +T      +  DI++ L +ERI+F+   I++  
Sbjct: 60  ISLRLSKKKATRARISTMPIGTPRVPYRTPGEGTWQWLDIWNALYRERIIFIGDNIDEEF 119

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMG 115
           +  + A +L+L++ +  K+I LYIN PGG +T  MA+YDTM  +K PI T C+G A ++ 
Sbjct: 120 SNQVLASMLYLDSIDNSKKIMLYINGPGGDLTPCMALYDTMLSLKSPIGTHCLGFAFNLA 179

Query: 116 SLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK 175
             +L+AGEKG R  +P  RI L  P+G   GQA DIE  A ++++IK  L      + G 
Sbjct: 180 GFILAAGEKGSRTGMPLCRISLQSPAGAARGQADDIENEANELIRIKDYLYGKLAGHTGH 239

Query: 176 TYEEVEKTLDRDHIMSASEACDWGVVDKVLM-SRIDIE 212
           + E++ + L R     A  A ++G++D+++  SRI  E
Sbjct: 240 SVEKIHEDLSRVKRFDAKGALEYGIIDRIVRPSRIKKE 277


>gi|159903902|ref|YP_001551246.1| ATP-dependent Clp protease-like protein [Prochlorococcus marinus
           str. MIT 9211]
 gi|159889078|gb|ABX09292.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9211]
          Length = 223

 Score =  200 bits (510), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 77/191 (40%), Positives = 115/191 (60%), Gaps = 19/191 (9%)

Query: 41  KERIVFVT----------GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV----- 85
           KERIV++            Q+   +  LI AQLL+LE +NP K +  YINS G       
Sbjct: 27  KERIVYLGLPLFSDDDAKRQLGMDVTELIVAQLLYLEFDNPDKPVYFYINSTGTSWYTGD 86

Query: 86  ----VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
                T   AI DT+ +IKPP+ T C+GQA    +++LSAG KG R ALP++ I+LHQP 
Sbjct: 87  AIGFETEAFAICDTISYIKPPVHTICIGQAMGTAAVILSAGTKGQRAALPHSSIVLHQPR 146

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            G  GQA+DI+  A++++  K+ + EI  KN G++ EE+ K  DR   ++ ++A ++G++
Sbjct: 147 SGAQGQATDIQIRAKEVIHNKQSMLEILSKNTGRSVEELSKDSDRMSYLNPNQAVEYGLI 206

Query: 202 DKVLMSRIDIE 212
           D+VL SR D+ 
Sbjct: 207 DRVLKSRKDLP 217


>gi|283783340|ref|YP_003374094.1| Clp protease [Gardnerella vaginalis 409-05]
 gi|297243348|ref|ZP_06927281.1| ATP-dependent Clp protease, protease subunit [Gardnerella vaginalis
           AMD]
 gi|283442109|gb|ADB14575.1| Clp protease [Gardnerella vaginalis 409-05]
 gi|296888595|gb|EFH27334.1| ATP-dependent Clp protease, protease subunit [Gardnerella vaginalis
           AMD]
          Length = 224

 Score =  200 bits (510), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 82/193 (42%), Positives = 131/193 (67%), Gaps = 1/193 (0%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   EQT  G ++ D Y++L ++RI+F+  Q++D  A  I AQLL LE+ +  +++ +
Sbjct: 32  VLPQFGEQTPYGMKTQDPYTKLFEDRIIFMGVQVDDTSADDIMAQLLVLESMDSDRDVMM 91

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQ+I P + T C+GQAAS  +++L+AG  G R  LPNAR+L+
Sbjct: 92  YINSPGGSMTAMTAIYDTMQYINPDVQTVCLGQAASAAAIILAAGAAGKRMILPNARVLI 151

Query: 138 HQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           HQP+ G   G+A++IE  A+++++++  L     K+ G+  E + K ++ D I++A EA 
Sbjct: 152 HQPAMGQDFGKATEIELQAKEMLRLRSWLESTLAKHTGQDIERIRKDIEVDTILTAPEAK 211

Query: 197 DWGVVDKVLMSRI 209
            +G+VD+VL  R 
Sbjct: 212 AYGMVDEVLERRA 224


>gi|228016943|gb|ACP51767.1| ATP-dependent Clp protease proteolytic subunit [Pinus banksiana]
          Length = 204

 Score =  200 bits (510), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 71/191 (37%), Positives = 115/191 (60%), Gaps = 3/191 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+RL +ER++F+   I + +A  +   +++L AE+  KEI 
Sbjct: 5   VPKVPFRAPGDEDATWVDLYNRLYRERLLFLAQDINNEIANQLMGLMVYLSAEDANKEIF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            +IN PGG V  G+ ++D MQ I P ++T CMG AASMGS +L  GE   R  LP+AR++
Sbjct: 65  SFINCPGGSVIPGVGLFDMMQAIVPDVNTICMGVAASMGSFILIGGEMPKRIVLPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  + G A+D    ++ +  ++  + + Y++  G+  E +++ L+RD  MSA+EA
Sbjct: 125 IHQPASSYYDGSAADFHNESKHVTLLREYITKCYIERTGQPEEVIQRDLNRDVFMSATEA 184

Query: 196 CDWGVVDKVLM 206
             +G+VD V  
Sbjct: 185 QAYGIVDVVAE 195


>gi|218679329|ref|ZP_03527226.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli CIAT
           894]
          Length = 176

 Score =  200 bits (510), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 75/173 (43%), Positives = 109/173 (63%), Gaps = 1/173 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           L K R +F+ G I   +A  +C+QL+ L A +   +I +Y+NSPGG V +G +I+D ++F
Sbjct: 5   LFKSRSIFIYGPINQELAQKVCSQLVALAAASDD-DIRIYVNSPGGHVESGDSIHDMIKF 63

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           IKP +     G  AS G+L+  A  K  R  LPN R LLHQPSGG  G ASDIE  A++I
Sbjct: 64  IKPKVWMIGTGWVASAGALIYVAAPKEQRLCLPNTRFLLHQPSGGTRGMASDIEIQAREI 123

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           +K+  RLN+I     G+  +++ K  DRD+ +SA EA D+G+V +++ S  DI
Sbjct: 124 IKMNERLNKIMAAATGQPLDKIAKDTDRDYWLSAEEAKDYGLVSRIVTSHADI 176


>gi|86358671|ref|YP_470563.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli CFN
           42]
 gi|116243121|sp|Q2K5Q0|CLPP3_RHIEC RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
           AltName: Full=Endopeptidase Clp 3
 gi|86282773|gb|ABC91836.1| endopeptidase Clp, subunit 3 protein [Rhizobium etli CFN 42]
          Length = 194

 Score =  200 bits (510), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 75/173 (43%), Positives = 111/173 (64%), Gaps = 1/173 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           L K R +F+ G I   +A  +C+QL+ L A    ++I +Y+NSPGG V +G +I+D ++F
Sbjct: 23  LFKSRSIFIYGPINQELAQKVCSQLVALAA-ASDEDIRIYVNSPGGHVESGDSIHDMVKF 81

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           IKP +     G  AS G+L+  A  +  R  LPN R LLHQPSGG  G ASDIE  A++I
Sbjct: 82  IKPKVWMIGTGWVASAGALIYVAAPRERRLCLPNTRFLLHQPSGGTRGMASDIEIQAREI 141

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           +K+  RLN+I  +  G+  E++ K  DRD+ +SA EA D+G+V +++ S+ DI
Sbjct: 142 IKMNERLNKIMAEATGQPLEKIAKDTDRDYWLSAEEAKDYGLVSRIVTSQADI 194


>gi|71028320|ref|XP_763803.1| ATP-dependent Clp protease proteolytic subunit [Theileria parva
           strain Muguga]
 gi|68350757|gb|EAN31520.1| ATP-dependent Clp protease proteolytic subunit, putative [Theileria
           parva]
          Length = 241

 Score =  200 bits (510), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 79/180 (43%), Positives = 123/180 (68%), Gaps = 2/180 (1%)

Query: 30  ERSYD--IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVT 87
           + SYD  I    +K R++F++G++ D ++  I + +L +   +P   I  YINSPGG VT
Sbjct: 61  KESYDKAIDEFFIKNRMIFLSGELNDKVSFKIISSILRINENDPNLPIKFYINSPGGSVT 120

Query: 88  AGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQ 147
           AG+AI+D ++ +K P+ T  +GQAASMG+ LL++G KGMR+A+PN+RI++HQP GG  GQ
Sbjct: 121 AGLAIFDVLRSLKMPVETVSLGQAASMGAFLLASGTKGMRYAMPNSRIMIHQPLGGAHGQ 180

Query: 148 ASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           ASDIE  A +I++I+  LN    +  GK+ +E+EK   RD+ M  SEA  +G++D ++ +
Sbjct: 181 ASDIEIQANEILQIREILNTNLSRFTGKSVQEIEKDCSRDNYMRPSEALQYGLIDHIIQT 240


>gi|255646657|gb|ACU23802.1| unknown [Glycine max]
          Length = 273

 Score =  200 bits (510), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 71/191 (37%), Positives = 112/191 (58%), Gaps = 4/191 (2%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            + P V+  T  G    D+ S L + RI+F+   +   +A  + +QL+ L   N   +I 
Sbjct: 85  PITPAVM--TPGGP--LDLTSVLFRNRIIFIGQPVNSQVAQRVISQLVTLATINENADIL 140

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YIN PGG   + +AIYD M +IKP + T C G AAS G+L L+ GEKGMR+A+PNARI 
Sbjct: 141 VYINCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQGALFLAGGEKGMRYAMPNARIT 200

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP  G  G   D+ R   + V+ + +++++Y    G+  E+V++  +RD  +   EA 
Sbjct: 201 IHQPQSGCGGHVEDVRRQVNEAVQSRHKIDKMYSVFTGQPLEKVQQYTERDRFLFVFEAL 260

Query: 197 DWGVVDKVLMS 207
           ++G +D VL +
Sbjct: 261 EFGFIDGVLET 271


>gi|290790864|gb|ADD63120.1| clp protease proteolytic subunit [Microlaena stipoides]
          Length = 216

 Score =  200 bits (510), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 71/195 (36%), Positives = 110/195 (56%), Gaps = 3/195 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+ + +ER +F+  +I   +   I   +++L  E+   +I 
Sbjct: 5   VPKVPYRIPGDEEATWVDLYNVMYRERTLFLGQEIRGEITNHITGLMVYLSIEDGISDIF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG + +GMAI+DTMQ + P I T C+G AASM S +L  GE   R A P+ARI+
Sbjct: 65  LFINSPGGWLISGMAIFDTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           LHQP S  +  +  +     +++ K++  +  +Y    GK +  V + ++RD  MSA EA
Sbjct: 125 LHQPASAYYRARTPEFLLEVEELHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEA 184

Query: 196 CDWGVVDKVLMSRID 210
             +G+VD V    ID
Sbjct: 185 KAYGLVDIVGDEMID 199


>gi|228017699|gb|ACP52511.1| ATP-dependent Clp protease proteolytic subunit [Pinus pinaster]
          Length = 202

 Score =  200 bits (510), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 75/191 (39%), Positives = 115/191 (60%), Gaps = 3/191 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+RL +ER++F+   I   +A  +   +++L AE+  KEI 
Sbjct: 5   VPKVPFRAPGDEDATWVDLYNRLYRERLLFLAQDINGEIANQLMGLMVYLSAEDANKEIF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            +IN PGG V  G+A++D MQ I P ++T CMG AASMGS +L  GE   R ALP+ARI+
Sbjct: 65  SFINCPGGSVIPGVALFDMMQAIVPDVNTICMGVAASMGSFILIGGEMHQRLALPHARIM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  + G A+D    ++ +  ++  + E Y+   G+  E +++ L+RD  MSA+EA
Sbjct: 125 IHQPASSYYDGSAADFHNESKHVTLLREYITECYIDRTGQPEEVIQRDLNRDVFMSATEA 184

Query: 196 CDWGVVDKVLM 206
             +G+VD V  
Sbjct: 185 KAYGIVDVVAE 195


>gi|228015924|gb|ACP50764.1| ATP-dependent Clp protease proteolytic subunit [Pinus taeda]
 gi|228016306|gb|ACP51140.1| ATP-dependent Clp protease proteolytic subunit [Pinus ponderosa]
 gi|228016819|gb|ACP51645.1| ATP-dependent Clp protease proteolytic subunit [Pinus attenuata]
 gi|228017185|gb|ACP52005.1| ATP-dependent Clp protease proteolytic subunit [Pinus leiophylla
           var. chihuahuana]
          Length = 196

 Score =  200 bits (510), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 71/191 (37%), Positives = 113/191 (59%), Gaps = 3/191 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+RL +ER++F+   I   +A  +   +++L AE+  K+I 
Sbjct: 5   VPKVPFRAPGDEDATWVDLYNRLYRERLLFLAQDINHEIANQLMGLMVYLSAEDANKDIF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            +IN PGG V  G+ ++D MQ I P + T CMG AASMGS +L  GE   R ALP+AR++
Sbjct: 65  SFINCPGGSVIPGVGLFDMMQAIVPDVHTICMGVAASMGSFILIGGEMPKRIALPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  + G A+D    ++ +  ++  + + Y++  G   E +++ L+RD  MSA+EA
Sbjct: 125 IHQPASSYYDGSAADFHNESKHVTMLRDYITKCYIERTGHPGEVIQRDLNRDVFMSATEA 184

Query: 196 CDWGVVDKVLM 206
             +G+VD V  
Sbjct: 185 QAYGIVDVVAE 195


>gi|284052220|ref|ZP_06382430.1| ATP-dependent Clp protease proteolytic subunit [Arthrospira
           platensis str. Paraca]
 gi|291569211|dbj|BAI91483.1| ATP-dependent Clp protease proteolytic subunit [Arthrospira
           platensis NIES-39]
          Length = 213

 Score =  200 bits (510), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 71/205 (34%), Positives = 121/205 (59%), Gaps = 15/205 (7%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP  +  +   +   +IY+RL +ERI+F+   +   +A  + + +L+L++++  K I +Y
Sbjct: 9   VPYQIPGSQYWQ-WVNIYTRLSQERIIFLNQPLTTGVANSLVSSMLYLDSDDHNKPIYMY 67

Query: 79  INSPGG--------------VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           INS G                V A +A+YDTMQ IK  I T C+GQA  M +LLLS G K
Sbjct: 68  INSIGDPVLAGMANESMGMMSVMAALAVYDTMQHIKSEIVTICLGQAVGMAALLLSCGSK 127

Query: 125 GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
           G R +LPN+ I L+ P  G  GQA+DI+  A++I+  +  + +I+ +N G+  E++ K +
Sbjct: 128 GKRASLPNSMITLYNPQTGTQGQATDIQVTAEEILSKRVLMMDIFHQNTGQPVEKLTKDM 187

Query: 185 DRDHIMSASEACDWGVVDKVLMSRI 209
           +R   M+  +A ++G++D+VL ++ 
Sbjct: 188 NRTFYMTPEQAKEYGIIDRVLTTQK 212


>gi|295136934|ref|YP_003587767.1| ATP-dependent Clp protease proteolytic subunit [Lathyrus sativus]
 gi|293338656|gb|ADE43628.1| ATP-dependent Clp protease proteolytic subunit [Lathyrus sativus]
          Length = 211

 Score =  200 bits (510), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 72/192 (37%), Positives = 113/192 (58%), Gaps = 3/192 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  Q    +     D+Y +L   R++F+  +IE  +A  +   +++L  EN  K++ 
Sbjct: 5   VPKVAFQIPGEDEATWVDLYHQLFYSRLLFLGDEIESELANQVAGMMIYLSLENKNKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V +GMAI+DTMQ ++  + T CMG AASM SL+L+ G    R A P+AR++
Sbjct: 65  LFINSPGGEVMSGMAIFDTMQVVEAQVHTICMGLAASMASLILAGGGITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  + G + +    A ++V ++  +  IY +   K   ++ K L+RDH MS  EA
Sbjct: 125 IHQPHSAPYEGPSGECMLEADEMVILRETITAIYSQRTRKPVWQISKDLERDHFMSPEEA 184

Query: 196 CDWGVVDKVLMS 207
             +G++D V  S
Sbjct: 185 QAYGIIDSVSDS 196


>gi|72382718|ref|YP_292073.1| ATP-dependent Clp protease-like protein [Prochlorococcus marinus
           str. NATL2A]
 gi|72002568|gb|AAZ58370.1| endopeptidase Clp [Prochlorococcus marinus str. NATL2A]
          Length = 224

 Score =  200 bits (510), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 77/194 (39%), Positives = 114/194 (58%), Gaps = 19/194 (9%)

Query: 41  KERIVFVT----------GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV----- 85
           KERIV++            Q+   +  LI AQLLFLE +N +K I  YINS G       
Sbjct: 27  KERIVYLGLPLFSDDDAKRQLGMDVTELIIAQLLFLEFDNSEKPIYFYINSTGTSWYTGD 86

Query: 86  ----VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
                T   AI DT++++KPP+ T C+GQA    +++LSAG KG R ALP+A I+LHQP 
Sbjct: 87  AIGFETEAFAICDTLRYVKPPVHTICIGQAMGTAAVILSAGTKGQRAALPHASIVLHQPR 146

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            G  GQA+DI+  A +++  K+ + EI   N G++ +++ K  DR   ++  EA D+G++
Sbjct: 147 SGAQGQATDIQIRANEVIHNKKAMLEILSHNTGRSVDQLSKDSDRMSYLNPHEAVDYGII 206

Query: 202 DKVLMSRIDIEEKS 215
           D+VL SR D+  + 
Sbjct: 207 DRVLTSRKDLPSEK 220


>gi|209550385|ref|YP_002282302.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209536141|gb|ACI56076.1| Endopeptidase Clp [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 194

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 75/173 (43%), Positives = 110/173 (63%), Gaps = 1/173 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           L K R +F+ G I   +A  +C+QL+ L A    ++I +Y+NSPGG V +G +I+D ++F
Sbjct: 23  LFKSRSIFIYGPINQELAQKVCSQLVALAA-ASDEDIRIYVNSPGGHVESGDSIHDMIKF 81

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           IKP +     G  AS G+L+  A  K  R  LPN R LLHQPSGG  G ASDIE  A++I
Sbjct: 82  IKPKVWMIGTGWVASAGALIYVAAPKEQRLCLPNTRFLLHQPSGGTRGMASDIEIQAREI 141

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           +K+  RLN+I     G+  +++ K  DRD+ +SA EA D+G+V +++ S+ DI
Sbjct: 142 IKMNERLNKIMAAATGQPLDKIAKDTDRDYWLSAEEAKDYGLVSRIVTSQADI 194


>gi|153012188|ref|YP_001381704.1| clp protease proteolytic subunit [Medicago truncatula]
          Length = 193

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 68/189 (35%), Positives = 115/189 (60%), Gaps = 5/189 (2%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  Q    +     D+Y+RL +ER++F+  ++   ++  +   +++L  E+  +++ 
Sbjct: 5   VPKVPFQLPEEDEASWVDLYNRLFQERLLFLGQEVNTEISNQLVGLMVYLSLEDKTRDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V +GMAI+D MQ ++  + T C+G AASMGSLLL  GE   R A P+A  +
Sbjct: 65  LFINSPGGEVISGMAIFDIMQVVEAEVHTVCVGLAASMGSLLLVGGEFTKRLAFPHA--M 122

Query: 137 LHQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP+   + GQ  +    A++++K+++ +  IY +  GK   ++ + ++RD  MSA EA
Sbjct: 123 IHQPATSLYEGQVGECMLEAEELLKMRKTITNIYAQRTGKASWQIYRDMERDLFMSAEEA 182

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 183 EAHGIVDTV 191


>gi|308813209|ref|XP_003083911.1| putative ATP-dependent Clp protease proteolytic subunit (ISS)
           [Ostreococcus tauri]
 gi|116055793|emb|CAL57878.1| putative ATP-dependent Clp protease proteolytic subunit (ISS)
           [Ostreococcus tauri]
          Length = 292

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 66/191 (34%), Positives = 114/191 (59%), Gaps = 2/191 (1%)

Query: 19  VPMVVEQTNRG--ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +T      +  DI++ L +ERI+++   I++ +   + A +LFL++ +  K + 
Sbjct: 97  VPRVPYKTPNESSWQWVDIWNCLYRERIIWIGQTIDEELGNQLVATMLFLDSVDRNKPMY 156

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYI S GG +   MAI DTM+ +K  + T   G A +MG LLL++G+KG R ALPN  I+
Sbjct: 157 LYITSEGGQIVPTMAIMDTMKHLKAEVGTVGFGSARAMGGLLLASGKKGKRAALPNTCIM 216

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           LH PSG   G ASD++   +++++I+ ++N+      G+  + V + + RD   +  +A 
Sbjct: 217 LHHPSGVARGSASDVQNEGKELMRIRSQINKKISDITGRPVDVVSEEIRRDKHFTPEQAL 276

Query: 197 DWGVVDKVLMS 207
           ++G++DK+L  
Sbjct: 277 EYGIIDKILYR 287


>gi|309322383|ref|YP_003934463.1| ATP-dependent Clp protease proteolytic subunit [Cathaya
           argyrophylla]
 gi|307683309|dbj|BAJ19616.1| ATP-dependent Clp protease proteolytic subunit [Cathaya
           argyrophylla]
          Length = 196

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 71/191 (37%), Positives = 113/191 (59%), Gaps = 3/191 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+RL +ER++F+   I   +A  +   +++L AE+  K+I 
Sbjct: 5   VPKVPFRAPGDEDATWVDLYNRLYRERLLFLAQDINPEIANQVTGLMVYLSAEDADKDIF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            ++N PGG V +G+ ++D MQ I P + T CMG AASMGS +L  GE   R A P+ARI+
Sbjct: 65  SFLNCPGGSVISGVGLFDIMQVIVPDVHTICMGVAASMGSFVLIGGEISKRIAFPHARIM 124

Query: 137 LHQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQPS  +  G A++     + +  ++  + + Y++  GK+ E +++ LDRD  MSA EA
Sbjct: 125 IHQPSSSYYDGPAAEFLNEVKHVTMLRDYITKCYIERTGKSGEVIQRDLDRDVYMSAREA 184

Query: 196 CDWGVVDKVLM 206
             +G+VD V  
Sbjct: 185 RAYGIVDAVAE 195


>gi|218672848|ref|ZP_03522517.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli
           GR56]
          Length = 194

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 75/173 (43%), Positives = 110/173 (63%), Gaps = 1/173 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           L K R +F+ G I   +A  +C+QL+ L A    ++I +Y+NSPGG V +G +I+D ++F
Sbjct: 23  LFKSRSIFIYGPINQELAQKVCSQLVALAA-ASDEDIRIYVNSPGGHVESGDSIHDMVKF 81

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           IKP +     G  AS G+L+  A  K  R  LPN R LLHQPSGG  G ASDIE  A++I
Sbjct: 82  IKPKVWMIGTGWVASAGALIYVAAPKERRICLPNTRFLLHQPSGGTRGMASDIEIQAREI 141

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           +K+  RLN+I     G+  +++ K  DRD+ +SA EA D+G+V +++ S+ DI
Sbjct: 142 IKMNERLNKIMAAATGQPLDKIAKDTDRDYWLSAEEAKDYGLVSRIVTSQADI 194


>gi|209527271|ref|ZP_03275782.1| Endopeptidase Clp [Arthrospira maxima CS-328]
 gi|209492338|gb|EDZ92682.1| Endopeptidase Clp [Arthrospira maxima CS-328]
          Length = 214

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 73/203 (35%), Positives = 120/203 (59%), Gaps = 15/203 (7%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP  +  +   +   +IY+RL +ERI+F+   +   +A  + + +L+L++++  K I +Y
Sbjct: 9   VPYQIPGSQYWQ-WVNIYTRLSQERIIFLNQPLTTGVANSLVSAMLYLDSDDQNKPIYMY 67

Query: 79  INSPGG--------------VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           INS G                V A +A+YDTMQ IK  I T C+GQA  M +LLLS G K
Sbjct: 68  INSIGDPVLAGMANESMGMMSVMAALAVYDTMQHIKSEIVTICLGQAVGMAALLLSCGSK 127

Query: 125 GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
           G R +LPN+ I L+ P  G  GQA+DI+  A +I+  +  + +I+ +N G+T E++ K +
Sbjct: 128 GKRASLPNSMITLYNPQTGTQGQATDIQVTADEILSKRALMMDIFHQNTGQTIEKLTKDM 187

Query: 185 DRDHIMSASEACDWGVVDKVLMS 207
           +R   M+  EA ++G++D+VL +
Sbjct: 188 NRTFYMTPEEAKEYGIIDRVLTT 210


>gi|124026439|ref|YP_001015554.1| ATP-dependent Clp protease-like protein [Prochlorococcus marinus
           str. NATL1A]
 gi|123961507|gb|ABM76290.1| Clp protease proteolytic subunit [Prochlorococcus marinus str.
           NATL1A]
          Length = 224

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 77/194 (39%), Positives = 114/194 (58%), Gaps = 19/194 (9%)

Query: 41  KERIVFVT----------GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV----- 85
           KERIV++            Q+   +  LI AQLLFLE +N +K I  YINS G       
Sbjct: 27  KERIVYLGLPLFSDDDAKRQLGMDVTELIIAQLLFLEFDNSEKPIYFYINSTGTSWYTGD 86

Query: 86  ----VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
                T   AI DT++++KPP+ T C+GQA    +++LSAG KG R ALP+A I+LHQP 
Sbjct: 87  AIGFETEAFAICDTLRYVKPPVHTICIGQAMGTAAVILSAGTKGQRAALPHASIVLHQPR 146

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            G  GQA+DI+  A +++  K+ + EI   N G++ +++ K  DR   ++  EA D+G++
Sbjct: 147 SGAQGQATDIQIRANEVIHNKKAMLEILSHNTGRSVDQLSKDSDRMSYLNPHEAVDYGII 206

Query: 202 DKVLMSRIDIEEKS 215
           D+VL SR D+  + 
Sbjct: 207 DRVLTSRKDLPGEK 220


>gi|324986430|ref|YP_004276301.1| ATP-dependent Clp protease proteolytic subunit [Pinus monophylla]
 gi|228016061|gb|ACP50899.1| ATP-dependent Clp protease proteolytic subunit [Pinus rzedowskii]
 gi|323522525|gb|ADX94867.1| ATP-dependent Clp protease proteolytic subunit [Pinus monophylla]
          Length = 196

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 74/191 (38%), Positives = 113/191 (59%), Gaps = 3/191 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+RL +ER++F+   I   +A  +   +++L AE+  K+I 
Sbjct: 5   VPKVPFRAPGDEDATWVDLYNRLYRERLLFLAQDINHEIANQLMGLMVYLSAEDANKDIF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+IN PGG V  G+ ++D MQ I P + T CMG AASMGS +L  GE   R ALP+AR++
Sbjct: 65  LFINCPGGSVIPGVGLFDMMQVIVPNVHTICMGVAASMGSFILIGGEITKRMALPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  + G A++    A+ I  ++  + + YV+      E +++ LDRD  MSA+EA
Sbjct: 125 IHQPASSYYDGPAAEFHNEAKHITMLRNYITKCYVERTDNPEEVIQRDLDRDIFMSATEA 184

Query: 196 CDWGVVDKVLM 206
             +G+VD V  
Sbjct: 185 RAYGIVDTVAE 195


>gi|218461627|ref|ZP_03501718.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli Kim
           5]
          Length = 194

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 75/173 (43%), Positives = 111/173 (64%), Gaps = 1/173 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           L K R +F+ G I   +A  +C+QL+ L A +   +I +Y+NSPGG V +G +I+D ++F
Sbjct: 23  LFKSRSIFIYGPINQELAQKVCSQLVALAAASDD-DIRIYVNSPGGHVESGDSIHDMVKF 81

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           IKP +     G  AS G+L+  A  K  R  LPN R LLHQPSGG  G ASDIE  A++I
Sbjct: 82  IKPKVWMIGTGWVASAGALIYVAAPKEQRLCLPNTRFLLHQPSGGTRGMASDIEIQAREI 141

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           +K+  RLN+I  +  G+  +++ K  DRD+ +SA EA D+G+V +++ S+ DI
Sbjct: 142 IKMNERLNKIMAEATGQPLDKIAKDTDRDYWLSAEEAKDYGLVSRIVTSQADI 194


>gi|217073352|gb|ACJ85035.1| unknown [Medicago truncatula]
          Length = 274

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 71/191 (37%), Positives = 118/191 (61%), Gaps = 4/191 (2%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            + P ++  T  G  + D+ S L + RI+F+   +   +A  + +QL+ L   +P  +I 
Sbjct: 86  PITPAIM--TPGG--ALDLSSVLFRNRIIFIGQPVNSQVAQRVISQLVTLATIDPDADIL 141

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YIN PGG   + +AIYD M +IKP + T C G AAS G+LLL+ GEKGMR+++PNARI+
Sbjct: 142 MYINCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQGTLLLAGGEKGMRYSMPNARIM 201

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           ++QP  GF G   D+ R   + V+ + ++ +++    G+  E+V++  +RD  +S SEA 
Sbjct: 202 INQPQCGFGGHVEDVRRLVNESVQSRYKMEKMFSAFTGQALEKVQEYTERDSFLSVSEAL 261

Query: 197 DWGVVDKVLMS 207
           + G++D VL +
Sbjct: 262 ELGLIDGVLET 272


>gi|11467216|ref|NP_043048.1| ATP-dependent Clp protease proteolytic subunit [Zea mays]
 gi|1168978|sp|P26567|CLPP_MAIZE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|902246|emb|CAA60310.1| clpP [Zea mays]
          Length = 216

 Score =  200 bits (508), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 70/195 (35%), Positives = 109/195 (55%), Gaps = 3/195 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+ + +ER +F+  +I   +   I   +++L  E+   +I 
Sbjct: 5   VPKVPYRIPGDEEATWVDLYNVMYRERTLFLGQEIRCEITNHITGLMVYLSIEDGNSDIF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INS GG + +GMAI+DTMQ + P I T C+G AASM S +L  GE   R A P+ARI+
Sbjct: 65  LFINSLGGWLISGMAIFDTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           LHQP S  +  +  +     +++ K++  +  +Y    GK +  V + ++RD  MSA EA
Sbjct: 125 LHQPASAYYRARTPEFLLEVEELHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEA 184

Query: 196 CDWGVVDKVLMSRID 210
             +G+VD V    ID
Sbjct: 185 KAYGLVDIVGDEMID 199


>gi|33866182|ref|NP_897741.1| ATP-dependent Clp protease-like protein [Synechococcus sp. WH 8102]
 gi|33639157|emb|CAE08163.1| ATP-dependent Clp protease proteolytic subunit 4 [Synechococcus sp.
           WH 8102]
          Length = 222

 Score =  200 bits (508), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 76/191 (39%), Positives = 116/191 (60%), Gaps = 19/191 (9%)

Query: 41  KERIVFVT----------GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV----- 85
           KERIV++            Q+   +  LI AQLLFLE +NP+K I  YINS G       
Sbjct: 27  KERIVYLGLPLFSDDDAKRQMGIDVTELIIAQLLFLEFDNPEKPIYFYINSTGTSWYSGD 86

Query: 86  ----VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
                T   AI DT++++KPP+ T C+GQA    +++LSAG KG R ALP++ I+LHQP 
Sbjct: 87  AIGFETEAFAICDTLRYVKPPVHTICIGQAMGTAAVILSAGTKGQRAALPHSSIVLHQPR 146

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            G  GQA+DI+  A++++  K+ + EI   N G++ EE+ K  DR   ++ ++A ++G++
Sbjct: 147 SGAQGQATDIQIRAKEVLHNKQAMLEILSTNTGRSVEELSKDSDRMSYLTPAQAVEYGLI 206

Query: 202 DKVLMSRIDIE 212
           D+VL SR ++ 
Sbjct: 207 DRVLSSRKELP 217


>gi|113475005|ref|YP_721066.1| ATP-dependent Clp protease-like protein [Trichodesmium erythraeum
           IMS101]
 gi|110166053|gb|ABG50593.1| Endopeptidase Clp [Trichodesmium erythraeum IMS101]
          Length = 229

 Score =  200 bits (508), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 76/199 (38%), Positives = 115/199 (57%), Gaps = 19/199 (9%)

Query: 34  DIYSRLLKERIVFVTGQ----------IEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           D+ S +LKERIV++             +   +  LI AQLL+L+ +NP+K I  YINS G
Sbjct: 25  DLESLMLKERIVYLGLPLFSSDEVKRNVGIDVTQLIIAQLLYLQFDNPEKPIYFYINSTG 84

Query: 84  GV---------VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
                       T   AI DTM ++KPPI T C+GQA    +++LSAG KG R +LP+A 
Sbjct: 85  TSWYTGDAIGFETEAFAICDTMSYVKPPIHTICIGQAMGTAAMILSAGTKGYRASLPHAT 144

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I+L+Q   G  GQA+DI   A++++  K    +I  KN G++ E++ K  DR   M+   
Sbjct: 145 IVLNQAKTGARGQATDISIRAKEVLVNKTTFLDILSKNTGQSVEKIAKDTDRMLYMTPEI 204

Query: 195 ACDWGVVDKVLMSRIDIEE 213
           A ++G++D+VL SR ++ +
Sbjct: 205 AKEYGLIDQVLASRKELPK 223


>gi|168007320|ref|XP_001756356.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692395|gb|EDQ78752.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 241

 Score =  200 bits (508), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 78/222 (35%), Positives = 124/222 (55%), Gaps = 10/222 (4%)

Query: 2   SFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICA 61
           + +    +    V   ++P       R +   D+ S L K RIVF+   +   +  L+ A
Sbjct: 11  THQSSQSRGRRGVVTMVIP-FQRGDARQQPPPDLPSYLFKNRIVFLAMSLVPAVTELVMA 69

Query: 62  QLLFLEAENPQKEISLYINSPG--------GVVTAGMAIYDTMQFIKPPISTFCMGQAAS 113
           +LL+L+ ++P+K I +YINS G        G  T   AIYDTM+++KPPI T C+G A  
Sbjct: 70  ELLYLQYDDPEKSIYMYINSTGTTKDGEKLGYETEAFAIYDTMRYVKPPIFTLCVGNAWG 129

Query: 114 MGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC 173
             +LLL+AG KG R  LP+A I+L QP   F GQA+DI+   +++  +K  L ++  ++ 
Sbjct: 130 EAALLLAAGSKGNRACLPSATIMLKQPIAQFRGQATDIDIARKEVRNVKEELVKLISRHT 189

Query: 174 GKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
           G+T E++   + R       EA D+G++DKVL +  D E++S
Sbjct: 190 GQTVEKITDDIRRPKYFKPDEAVDYGLIDKVLYAEGD-EKRS 230


>gi|313184018|ref|YP_004021175.1| clp protease proteolytic subunit [Castanea mollissima]
 gi|309321545|gb|ADO65085.1| clp protease proteolytic subunit [Castanea mollissima]
          Length = 196

 Score =  200 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 69/189 (36%), Positives = 115/189 (60%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGERSYDI-YSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           VP V  ++   E +  +  +RL + R++F+  +++  ++  I   +++L  E+  K++ L
Sbjct: 5   VPKVPFRSPGEEDASWVDINRLYRARLLFLGQEVDSDLSNQIIGLMVYLSLEDDSKDLYL 64

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN-ARIL 136
           +INSPGG V  G+AIYDTMQF++P + T CMG AAS+GS LL  GE   R A P+  R++
Sbjct: 65  FINSPGGWVIPGVAIYDTMQFVQPDVQTICMGLAASIGSFLLVGGEITKRLAFPHARRVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +   A +    A++++K++  +  +YV+  G     V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAPAGEFILEAEEMMKLRETITGVYVQRTGTPLWVVSEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGIVDHV 193


>gi|190892811|ref|YP_001979353.1| endopeptidase Clp protein, subunit 3 [Rhizobium etli CIAT 652]
 gi|190698090|gb|ACE92175.1| endopeptidase Clp protein, subunit 3 [Rhizobium etli CIAT 652]
          Length = 194

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 75/173 (43%), Positives = 110/173 (63%), Gaps = 1/173 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           L K R +F+ G I   +A  +C+QL+ L A    ++I +Y+NSPGG V +G +I+D ++F
Sbjct: 23  LFKSRSIFIYGPINQELAQKVCSQLVALAA-ASDEDIRIYVNSPGGHVESGDSIHDMVKF 81

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           IKP +     G  AS G+L+  A  K  R  LPN R LLHQPSGG  G ASDIE  A++I
Sbjct: 82  IKPKVWMIGTGWVASAGALIYVAAPKEQRLCLPNTRFLLHQPSGGTRGMASDIEIQAREI 141

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           +K+  RLN+I     G+  +++ K  DRD+ +SA EA D+G+V +++ S+ DI
Sbjct: 142 IKMNERLNKIMAAATGQPLDKIAKDTDRDYWLSAEEAKDYGLVSRIVTSQADI 194


>gi|170077810|ref|YP_001734448.1| ATP-dependent Clp protease-like protein [Synechococcus sp. PCC
           7002]
 gi|169885479|gb|ACA99192.1| Clp protease [Synechococcus sp. PCC 7002]
          Length = 228

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 74/192 (38%), Positives = 112/192 (58%), Gaps = 19/192 (9%)

Query: 41  KERIVFVT----------GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV----- 85
           KERIV++            QI   +  LI AQLLFL+ ++P K I +YINS G       
Sbjct: 32  KERIVYLGLPLVSPDEYKDQIGVDVTELIIAQLLFLQFDDPDKPIYMYINSTGTSWYGGD 91

Query: 86  ----VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
                T   AI DT+ +I PP+ T C+GQA    +++L+AG KG R +LP++ I+LHQ  
Sbjct: 92  SIGFETEAFAICDTLNYITPPVHTICLGQAMGTAAMILAAGTKGCRASLPHSTIILHQAR 151

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            G  GQASDI+  A+++++ KR + ++  K  G+  E++EK  DR   M+  +A ++G++
Sbjct: 152 QGAQGQASDIQIRAKEVIENKRTILQMMSKYTGQPLEKLEKDTDRMFYMTPQQALEYGII 211

Query: 202 DKVLMSRIDIEE 213
           DKVL S  D+  
Sbjct: 212 DKVLESSKDLPS 223


>gi|331695495|ref|YP_004331734.1| ATP-dependent Clp protease proteolytic subunit [Pseudonocardia
           dioxanivorans CB1190]
 gi|326950184|gb|AEA23881.1| ATP-dependent Clp protease proteolytic subunit [Pseudonocardia
           dioxanivorans CB1190]
          Length = 236

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 83/184 (45%), Positives = 115/184 (62%)

Query: 22  VVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS 81
           V++    G     ++ RLL+ERIVF+  +++D +A  I  QLL L A +P  +I+ YINS
Sbjct: 50  VLQHVGVGMGGDPVFDRLLEERIVFLGKEVDDEIANRITGQLLLLAAADPAADITFYINS 109

Query: 82  PGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
           PGG VTAGMAIYDTMQ I P ++T+ +G AASMG  LL+AG  G R AL + RIL+HQPS
Sbjct: 110 PGGSVTAGMAIYDTMQVIAPDVATYAVGFAASMGQFLLTAGAPGKRHALAHTRILMHQPS 169

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
               G  +DI   A     +KR +  +  ++ G+  E +    DRDH  +A EA D+G+V
Sbjct: 170 ASLGGTHTDIAIRAGASAGMKREIARLTARHSGRDVETIIADADRDHWFTAEEARDYGLV 229

Query: 202 DKVL 205
           D V+
Sbjct: 230 DTVI 233


>gi|17231850|ref|NP_488398.1| ATP-dependent Clp protease-like protein [Nostoc sp. PCC 7120]
 gi|17133494|dbj|BAB76057.1| ATP-dependent Clp protease proteolytic subunit [Nostoc sp. PCC
           7120]
          Length = 220

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 72/176 (40%), Positives = 111/176 (63%), Gaps = 9/176 (5%)

Query: 41  KERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS---------PGGVVTAGMA 91
           KERIV++   +   +  LI AQLL+L++++P K I +YINS         P G  T   A
Sbjct: 32  KERIVYLGMPLVPAVTELIVAQLLYLQSDDPDKPIKIYINSTGTSGYSGEPIGFETEAFA 91

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYDTM++IKPPI T C+G A  M ++LLSAG KG R +LP++ I+LHQP     GQA+DI
Sbjct: 92  IYDTMKYIKPPIHTICIGSAMGMAAMLLSAGTKGCRASLPSSSIILHQPKSYAQGQATDI 151

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           +  A++++  K  + +I+ +  G+  E++ K +DR   M+  +A D+G++D+V   
Sbjct: 152 QIRAREVLVNKGSMVDIFARTTGQAPEKITKDMDRLLYMTPYQAKDYGLIDRVFEK 207


>gi|156618848|ref|YP_001430129.1| ATP-dependent Clp protease proteolytic subunit [Cuscuta reflexa]
 gi|160380550|sp|A7M988|CLPP_CUSRE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|156556033|emb|CAM98416.1| ATP-dependent Clp protease proteolytic subunit [Cuscuta reflexa]
          Length = 201

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 76/189 (40%), Positives = 117/189 (61%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQ--TNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  Q   +R     DIY+RL +ER +F+   +E  +A  +    ++L  ++  K+I 
Sbjct: 5   VPRVRFQYRRDRSRVWIDIYNRLYRERCLFLAHVVESQIANQLVGLFIYLGVQDETKDIF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG + +G AIYDTMQF++P I T C+G AASMGS LL  G    R A P+AR++
Sbjct: 65  LFINSPGGGIISGFAIYDTMQFVRPDIQTICVGLAASMGSFLLVGGAITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  F  Q  +    A++++K++  L ++YV+  GK    + + ++RD  +SA+EA
Sbjct: 125 IHQPMSAFFETQTVEAILEAEELLKLRESLAKVYVQRTGKPDWVIAEDMERDVFLSATEA 184

Query: 196 CDWGVVDKV 204
             +G+VD V
Sbjct: 185 QSYGIVDVV 193


>gi|328947527|ref|YP_004364864.1| ATP-dependent Clp protease proteolytic subunit [Treponema
           succinifaciens DSM 2489]
 gi|328447851|gb|AEB13567.1| ATP-dependent Clp protease proteolytic subunit [Treponema
           succinifaciens DSM 2489]
          Length = 216

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 71/177 (40%), Positives = 111/177 (62%), Gaps = 1/177 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +  + LK R + ++G+I + +A  I  QLL LEA+   K I +YI+SPGG V AG AI+D
Sbjct: 40  LAEKFLKTRQILLSGEICEELAEKIIRQLLILEAD-NDKPIYIYIDSPGGDVYAGFAIFD 98

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           T++FI  P+     G  AS  +L+L +  K  R  LP++  L+HQPS G  G A+DIE H
Sbjct: 99  TIRFINAPVYIIGTGLIASAAALILLSVPKERRLGLPHSSYLIHQPSSGMKGVATDIEIH 158

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           A ++ K + ++NEI  +  G + E+V K  DRD+ +++ EA  +G++ KV+ +R D+
Sbjct: 159 AAELAKTRTKINEIISEQTGTSLEKVSKDTDRDYWLNSEEAVQYGLICKVITNRKDL 215


>gi|4454056|emb|CAA04393.1| ClpP [Arabidopsis thaliana]
          Length = 228

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 84/183 (45%), Positives = 124/183 (67%), Gaps = 1/183 (0%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           E   RG  S D+   LL+ERIVF+   I+D +A  I +QLL L+A++P+K+I L+INSPG
Sbjct: 6   ESAIRGAES-DVMGLLLRERIVFLGSSIDDFVADAIMSQLLLLDAKDPKKDIKLFINSPG 64

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           G ++A MAIYD +Q ++  +ST  +G AAS  S++L AG KG RFA+PN RI++HQP GG
Sbjct: 65  GSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGAGTKGNRFAMPNTRIMIHQPLGG 124

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            SGQA D+E  A++++  K  +  I      +++E+V K +DRD  MS  EA ++G++D 
Sbjct: 125 ASGQAIDVEIQAKEVMHNKNNVTSIIAGCTSRSFEQVLKDIDRDRYMSPIEAVEYGLIDG 184

Query: 204 VLM 206
           V+ 
Sbjct: 185 VID 187


>gi|219820815|gb|ACL37528.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes]
 gi|219820817|gb|ACL37529.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes]
 gi|219820819|gb|ACL37530.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes]
 gi|219820821|gb|ACL37531.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes]
 gi|219820823|gb|ACL37532.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes]
 gi|219820825|gb|ACL37533.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes]
 gi|219820827|gb|ACL37534.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes]
 gi|219820829|gb|ACL37535.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes]
 gi|219820831|gb|ACL37536.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes]
 gi|219820833|gb|ACL37537.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes]
 gi|219820835|gb|ACL37538.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes]
 gi|219820837|gb|ACL37539.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes]
 gi|219820839|gb|ACL37540.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes]
 gi|219820841|gb|ACL37541.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes]
 gi|219820843|gb|ACL37542.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes]
 gi|219820845|gb|ACL37543.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes]
 gi|219820847|gb|ACL37544.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes]
 gi|219820849|gb|ACL37545.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes]
 gi|219820851|gb|ACL37546.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes]
 gi|219820853|gb|ACL37547.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes]
          Length = 151

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 89/151 (58%), Positives = 116/151 (76%)

Query: 29  GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTA 88
           GER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL+A++P+K+I LYINSPGG ++A
Sbjct: 1   GERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDIFLYINSPGGSISA 60

Query: 89  GMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQA 148
           GMAIYDTM F+K  + T  MG AASMGS LL+AG  G RFALPNA I++HQP GG  GQA
Sbjct: 61  GMAIYDTMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEIMIHQPLGGAQGQA 120

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
           ++IE  A+ I+KIK R+N I  +  G+ YE 
Sbjct: 121 TEIEIAARHILKIKERMNTIMAEKTGQPYEV 151


>gi|218516591|ref|ZP_03513431.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli
           8C-3]
 gi|327193487|gb|EGE60382.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli
           CNPAF512]
          Length = 194

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 75/173 (43%), Positives = 110/173 (63%), Gaps = 1/173 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           L K R +F+ G I   +A  +C+QL+ L A +   +I +Y+NSPGG V +G +I+D ++F
Sbjct: 23  LFKSRSIFIYGPINQELAQKVCSQLVALAAASDD-DIRIYVNSPGGHVESGDSIHDMVKF 81

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           IKP +     G  AS G+L+  A  K  R  LPN R LLHQPSGG  G ASDIE  A++I
Sbjct: 82  IKPKVWMIGTGWVASAGALIYVAAPKEQRLCLPNTRFLLHQPSGGTRGMASDIEIQAREI 141

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           +K+  RLN+I     G+  +++ K  DRD+ +SA EA D+G+V +++ S+ DI
Sbjct: 142 IKMNERLNKIMAAATGQPLDKIAKDTDRDYWLSAEEAKDYGLVSRIVTSQADI 194


>gi|33240836|ref|NP_875778.1| ATP-dependent Clp protease-like protein [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
 gi|33238365|gb|AAQ00431.1| Protease subunit of ATP-dependent Clp protease [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
          Length = 221

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 81/193 (41%), Positives = 115/193 (59%), Gaps = 19/193 (9%)

Query: 41  KERIVFVT----------GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV----- 85
           KERIV++            Q+   +  LI AQLLFLE +NP+K I  YINS G       
Sbjct: 27  KERIVYLGLPLFSDDDAKRQLGMDVTELIIAQLLFLEFDNPEKPIYFYINSTGTSWHTGD 86

Query: 86  ----VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
                T   AI DT+ +IKPPI T C+GQA    +++LS G KG R ALP+A I+LHQP 
Sbjct: 87  AIGFETEAFAICDTISYIKPPIHTICIGQAMGTAAVILSGGSKGHRAALPHASIVLHQPR 146

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            G SGQA+DI+  A++++  K+ + EI  KN GK+  ++ K  DR   ++  EA ++G++
Sbjct: 147 SGASGQATDIQIRAKEVIHNKQAMLEILSKNTGKSVSQLSKDSDRMSYLNPHEAVEYGLI 206

Query: 202 DKVLMSRIDIEEK 214
           D+VL SR D+ + 
Sbjct: 207 DRVLTSRKDLPKN 219


>gi|254293120|ref|YP_003059143.1| endopeptidase Clp [Hirschia baltica ATCC 49814]
 gi|254041651|gb|ACT58446.1| Endopeptidase Clp [Hirschia baltica ATCC 49814]
          Length = 198

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 74/188 (39%), Positives = 117/188 (62%), Gaps = 1/188 (0%)

Query: 25  QTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG 84
           +   GE +  +   L K R + +TG I+D+ A  +C +LL L +E+    I L ++SPGG
Sbjct: 11  EKPLGEPNAFLEEALFKARTILLTGGIDDNQARRVCERLLALSSESAD-PILLVLSSPGG 69

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
            V +G  I+D ++F+  P+     G  AS G+L+ +A +K  RFA PN R LLH+P GG 
Sbjct: 70  HVESGDMIHDMIKFVPAPVKVLGTGWVASAGALIYAAAQKENRFASPNTRFLLHEPRGGV 129

Query: 145 SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            GQASD+E  A++I+K++ RLN I+ +  GK  +++++  DRD  MSA EA  +G+V K+
Sbjct: 130 GGQASDVEIQAREIIKMRERLNNIFAEATGKPLKKIQEDTDRDFWMSAEEAVKYGLVGKI 189

Query: 205 LMSRIDIE 212
           + S+ +I 
Sbjct: 190 VTSQKEIM 197


>gi|168049469|ref|XP_001777185.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671413|gb|EDQ57965.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 237

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 79/210 (37%), Positives = 123/210 (58%), Gaps = 12/210 (5%)

Query: 17  GLVPMVVE---QTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQK 73
           G+V MV+       R +   D+ S L K RIVF+   +   +  L+ A+LL+L+ ++P+K
Sbjct: 18  GVVTMVIPFQRGDARQQPPPDLPSYLFKNRIVFLAMSLVPAVTELVMAELLYLQYDDPEK 77

Query: 74  EISLYINSPG--------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
            I +YINS G        G  T   AIYDTM+++KPPI T C+G A    +LLL+AG KG
Sbjct: 78  SIYMYINSTGTTKDGEKLGYETEAFAIYDTMRYVKPPIFTLCVGNAWGEAALLLAAGSKG 137

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
            R  LP+A I+L QP   F GQA+DI+   +++  +K  L ++  ++ G++ E++   + 
Sbjct: 138 NRACLPSATIMLKQPIAQFRGQATDIDIARKEVRNVKEELVKLLSRHTGQSPEKITDDIR 197

Query: 186 RDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
           R       EA D+G++DKVL +  D E++S
Sbjct: 198 RPKYFKPDEAVDYGIIDKVLYAEGD-EKRS 226


>gi|282896314|ref|ZP_06304336.1| Peptidase S14, ClpP [Raphidiopsis brookii D9]
 gi|281198810|gb|EFA73689.1| Peptidase S14, ClpP [Raphidiopsis brookii D9]
          Length = 229

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 75/199 (37%), Positives = 118/199 (59%), Gaps = 19/199 (9%)

Query: 34  DIYSRLLKERIVFVTG----------QIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           D+ S LLKERIV++            Q+   +  LI AQLL+L+ +NP+K I  YINS G
Sbjct: 25  DLASLLLKERIVYLGTPLVSPDEYKRQMGVDVTKLIIAQLLYLKFDNPEKPIFFYINSTG 84

Query: 84  GV---------VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
                       T   AI DT+ +IK P+ T C+GQA    +L+LS G KG R +LP+A 
Sbjct: 85  TSWYTGDAIGYETEAFAICDTIDYIKTPVHTICIGQAIGTAALILSCGTKGFRASLPHAT 144

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I+L+QP  G  GQA+DI+ +A++++  K  + +I+ KN G+  E++ K ++R   ++   
Sbjct: 145 IVLNQPRSGTRGQATDIQIYAKEVLSNKAAILDIFSKNTGQQPEKISKDMERMFYLTPQA 204

Query: 195 ACDWGVVDKVLMSRIDIEE 213
           A ++G++D+VL S  D+ +
Sbjct: 205 AKEYGLIDRVLESMKDLPK 223


>gi|282900570|ref|ZP_06308512.1| Peptidase S14, ClpP [Cylindrospermopsis raciborskii CS-505]
 gi|281194370|gb|EFA69325.1| Peptidase S14, ClpP [Cylindrospermopsis raciborskii CS-505]
          Length = 229

 Score =  199 bits (506), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 75/199 (37%), Positives = 117/199 (58%), Gaps = 19/199 (9%)

Query: 34  DIYSRLLKERIVFVTG----------QIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           D+ S LLKERIV++            Q+   +  LI AQLL+L+ +NP K I  YINS G
Sbjct: 25  DLASLLLKERIVYLGTPLVSPDEYKRQMGVDVTKLIIAQLLYLKFDNPDKPIFFYINSTG 84

Query: 84  GV---------VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
                       T   AI DT+ +IK P+ T C+GQA    +L+LS G KG R +LP+A 
Sbjct: 85  TSWYTGDAIGYETEAFAICDTIDYIKTPVHTICIGQAIGTAALILSCGTKGFRASLPHAT 144

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I+L+QP  G  GQA+DI+ +A++++  K  + +I+ KN G+  E++ K ++R   ++   
Sbjct: 145 IVLNQPRSGTRGQATDIQIYAKEVLANKAAILDIFSKNTGQQPEKISKDMERMFYLTPQA 204

Query: 195 ACDWGVVDKVLMSRIDIEE 213
           A ++G++D+VL S  D+ +
Sbjct: 205 AKEYGLIDRVLESMKDLPK 223


>gi|186681466|ref|YP_001864662.1| ATP-dependent Clp protease-like protein [Nostoc punctiforme PCC
           73102]
 gi|186463918|gb|ACC79719.1| peptidase S14, ClpP [Nostoc punctiforme PCC 73102]
          Length = 220

 Score =  199 bits (506), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 72/176 (40%), Positives = 111/176 (63%), Gaps = 9/176 (5%)

Query: 41  KERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS---------PGGVVTAGMA 91
           KERIV++   +   +  LI A+LLFL++++P+K I +YINS         P G  T   A
Sbjct: 32  KERIVYIGMPLVPAVTELIVAELLFLQSDDPEKPIKIYINSTGTSGYSGEPIGFETEAFA 91

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYDTM++IKPPI T C+G A  M ++LLSAG KG R +LP++ I+LHQP     GQA+DI
Sbjct: 92  IYDTMRYIKPPIHTICVGSAMGMSAMLLSAGTKGCRASLPHSSIILHQPKSYAQGQATDI 151

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           +  A++++  K  L +I  +  G+  E++ K +DR   ++  EA ++G++D+V   
Sbjct: 152 QIRAREVLVNKGALVDILHQTTGQPREKITKDMDRLLYLTPYEAKEYGLIDRVFEK 207


>gi|255580803|ref|XP_002531222.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis]
 gi|223529182|gb|EEF31158.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis]
          Length = 314

 Score =  199 bits (506), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 75/214 (35%), Positives = 118/214 (55%), Gaps = 9/214 (4%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +    V   ++P     +   +   D+ S L K RIV++   +   +  LI A+ L+L+ 
Sbjct: 90  RGKRSVVTMVIPY-TRGSAWEQPPPDLASYLFKNRIVYLGMSLVPSVTELILAEFLYLQY 148

Query: 69  ENPQKEISLYINSPG--------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           E+ +K I LYINS G        G  T   AI+D M ++KPPI T C+G A    +LLL+
Sbjct: 149 EDEEKPIYLYINSTGTTKGGEKLGYETEAFAIHDVMGYVKPPIFTLCVGNAWGEAALLLA 208

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG R ALP++ I++ QP G F GQA+D+E   ++I  +K  L  +  K  GK+  E+
Sbjct: 209 AGSKGNRSALPSSTIMIKQPIGRFQGQATDVELARKEISNVKAELVNLLAKYIGKSPGEI 268

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           E  + R    + +EA ++G++DKVL +    E++
Sbjct: 269 EADISRPKYFTPAEAVEYGIIDKVLYNERGTEDR 302


>gi|330837420|ref|YP_004412061.1| ATP-dependent Clp protease proteolytic subunit ClpP [Spirochaeta
           coccoides DSM 17374]
 gi|329749323|gb|AEC02679.1| ATP-dependent Clp protease proteolytic subunit ClpP [Spirochaeta
           coccoides DSM 17374]
          Length = 246

 Score =  198 bits (505), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 73/194 (37%), Positives = 117/194 (60%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T    +   +  +LLK R + ++G+I+   A  +  QLL +EAE+    + L
Sbjct: 53  VMPDKEEKTPVVPQDPALNDKLLKTRSILLSGEIDKECADRLIRQLLVMEAEDGDAPVYL 112

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V AG AIYD ++F+  PI+   MG  AS  +L+L +     R  LP++  L+
Sbjct: 113 YINSPGGDVDAGYAIYDMIRFVSCPITIIGMGLVASAAALILLSVPADRRVGLPDSTYLI 172

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP  G  G A+DIE HA+ I K++ +L+ +     GK+ EEV +  +RDH + A EA D
Sbjct: 173 HQPLSGMKGVATDIEIHARQIEKLRAKLDGVIAAATGKSVEEVAEDTERDHWLDAGEARD 232

Query: 198 WGVVDKVLMSRIDI 211
           +G++ +++ SR ++
Sbjct: 233 YGLISRIVSSRKEL 246


>gi|544043|sp|P36387|CLPP_PINCO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|457148|gb|AAA68094.1| ATP-dependent protease proteolytic subunit [Pinus contorta]
          Length = 205

 Score =  198 bits (505), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 73/191 (38%), Positives = 115/191 (60%), Gaps = 3/191 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+RL +ER++F+   I + +A  +   +++L AE+  KEI 
Sbjct: 5   VPKVPFRAPGDEDATWVDLYNRLYRERLLFLAQDINNEIANQLMGLMVYLSAEDANKEIF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            +IN PGG V  G+ +Y  MQ I P ++T CMG AASMGS +L  GE   R ALP+AR++
Sbjct: 65  SFINCPGGSVIPGVGLYRMMQAIVPDVNTICMGVAASMGSFILIGGEMPKRIALPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  + G A+D    ++ +  ++  + E Y++  G+  E +++ L+RD  MSA+EA
Sbjct: 125 IHQPASSYYDGSAADFHNESKHVTLVREYITECYIERTGQPEEVIQRDLNRDVFMSATEA 184

Query: 196 CDWGVVDKVLM 206
             +G+VD V  
Sbjct: 185 QAYGIVDVVAE 195


>gi|289066851|ref|YP_003434369.1| clp protease proteolytic subunit [Vigna radiata]
 gi|259020038|gb|ACV90236.1| clp protease proteolytic subunit [Vigna radiata]
          Length = 194

 Score =  198 bits (505), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 73/190 (38%), Positives = 115/190 (60%), Gaps = 6/190 (3%)

Query: 19  VPMVVEQTN--RGERSYDI-YSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           VP V  +    R     DI  +RL +ER++F+   ++  ++  + + +++L  E   KE+
Sbjct: 5   VPRVPFRIPGDRDAAWIDILINRLYRERLLFLGQDVDSEISNQLISIMIYLSIEKENKEL 64

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           SL+INSPGG V  G+AIYDTMQF++P + T C+G AASMGS LL+ G    R A P+A  
Sbjct: 65  SLFINSPGGWVIPGIAIYDTMQFVQPDVQTVCLGLAASMGSFLLAGGTITKRLAFPHA-- 122

Query: 136 LLHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           ++HQP S  +  QA +    A++++K++  +  +YV+  GK    +   ++RD  MSA+E
Sbjct: 123 MIHQPASSFYEAQAGEFVLEAEELLKLRETITNVYVQRTGKPLWVISDDMERDVFMSAAE 182

Query: 195 ACDWGVVDKV 204
           A   G+VD V
Sbjct: 183 AQAHGIVDLV 192


>gi|260434315|ref|ZP_05788285.1| Clp protease [Synechococcus sp. WH 8109]
 gi|260412189|gb|EEX05485.1| Clp protease [Synechococcus sp. WH 8109]
          Length = 225

 Score =  198 bits (505), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 74/191 (38%), Positives = 114/191 (59%), Gaps = 19/191 (9%)

Query: 41  KERIVFVT----------GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV----- 85
           KERIV++            Q+   +  LI AQLL+LE +NP+K I  YINS G       
Sbjct: 30  KERIVYLGLPLFSDDDAKRQMGIDVTELIIAQLLYLEFDNPEKPIYFYINSTGTSWYSGD 89

Query: 86  ----VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
                T   AI DT++++KPP+ T C+GQA    +++LSAG KG R ALP++ I+LHQP 
Sbjct: 90  AIGFETEAFAICDTLRYVKPPVHTICIGQAMGTAAVILSAGTKGQRAALPHSSIVLHQPR 149

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            G  GQA+DI+  A++++  K+ + EI   N G++ E++    DR   ++  +A ++G++
Sbjct: 150 SGARGQATDIQIRAKEVLHNKQAMLEILSTNTGRSVEDLSNDSDRMSYLTPQQAVEYGLI 209

Query: 202 DKVLMSRIDIE 212
           D+VL SR D+ 
Sbjct: 210 DRVLSSRKDLP 220


>gi|326499826|dbj|BAJ90748.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 271

 Score =  198 bits (505), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 73/218 (33%), Positives = 123/218 (56%), Gaps = 7/218 (3%)

Query: 5   GCAKKDSEDVFLGLVP----MVVEQTNR--GERSYDIYSRLLKERIVFVTGQIEDHMATL 58
           G + K +    + ++P     V  +T      +  DI++ L +ERI+F+   I++  +  
Sbjct: 40  GLSNKRATRARISMMPVGTPRVPYRTPGEGTWQWLDIWNALYRERIIFIGDNIDEEFSNQ 99

Query: 59  ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLL 118
           + A +L+L++ +  K+I LYIN PGG +T  MA+YDTM  +K PI T C+G A ++   +
Sbjct: 100 VLASMLYLDSVDDTKKILLYINGPGGDLTPCMALYDTMLSLKSPIGTHCLGFAFNLAGFI 159

Query: 119 LSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYE 178
           L+AG+KG R  +P  R+ L  P+G   GQA DIE  + ++ +IK  L     ++ G + E
Sbjct: 160 LAAGQKGSRTGMPLCRVSLQSPAGAARGQADDIENESNELNRIKNYLYGKLAEHTGHSVE 219

Query: 179 EVEKTLDRDHIMSASEACDWGVVDKVLM-SRIDIEEKS 215
           +V + L R     A  A ++G++D+++  SRI  E  S
Sbjct: 220 KVHEDLSRSKRFDAEGALEYGIIDRIVRPSRIKKEGGS 257


>gi|241205772|ref|YP_002976868.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240859662|gb|ACS57329.1| Endopeptidase Clp [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 194

 Score =  198 bits (505), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 74/173 (42%), Positives = 110/173 (63%), Gaps = 1/173 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           L K R +F+ G I   +A  +C+QL+ L A    ++I +Y+NSPGG V +G +I+D ++F
Sbjct: 23  LFKSRSIFIYGPINQELAQKVCSQLVALAA-ASDEDIRIYVNSPGGHVESGDSIHDMIKF 81

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           IKP +     G  AS G+L+  A  K  R  LPN R LLHQPSGG  G ASDIE  A++I
Sbjct: 82  IKPKVWMIGTGWVASAGALIYVATPKERRLCLPNTRFLLHQPSGGTRGMASDIEIQAREI 141

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           +K+  RLN I     G+  ++++K  DRD+ +SA EA ++G+V +++ S+ DI
Sbjct: 142 IKMNERLNRIMAAATGQPLDKIDKDTDRDYWLSAEEAKEYGLVSRIVTSQADI 194


>gi|222086641|ref|YP_002545175.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Agrobacterium
           radiobacter K84]
 gi|221724089|gb|ACM27245.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Agrobacterium
           radiobacter K84]
          Length = 195

 Score =  198 bits (505), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 74/188 (39%), Positives = 115/188 (61%), Gaps = 1/188 (0%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           ++ N      D  + L K R +F+ G I   +A  +C+QL+ L + +   +I +Y+NSPG
Sbjct: 9   DKKNEAPLGKDAEANLFKSRSIFIYGGITQELAQKVCSQLVALSSASDD-DIRIYVNSPG 67

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           G V +G +I+D ++FIKP +     G  AS G+L+  +  K  R  LPN R LLHQPSGG
Sbjct: 68  GHVESGDSIHDMIKFIKPKVWIIGTGWVASAGALIYVSVPKERRICLPNTRFLLHQPSGG 127

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
             G ASDIE  A++I+K+  RLN I+ +  G+  E++ K  DRD+ +SA EA  +G+V +
Sbjct: 128 TRGMASDIEIQAREIIKMNERLNRIFSEATGQPIEKIAKDTDRDYWLSAEEAKAYGLVSR 187

Query: 204 VLMSRIDI 211
           ++ S+ +I
Sbjct: 188 IVTSQAEI 195


>gi|226360645|ref|YP_002778423.1| ATP-dependent Clp protease proteolytic subunit [Rhodococcus opacus
           B4]
 gi|226239130|dbj|BAH49478.1| ATP-dependent Clp protease proteolytic subunit [Rhodococcus opacus
           B4]
          Length = 194

 Score =  198 bits (504), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 93/187 (49%), Positives = 136/187 (72%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+E+T  GERS+DI+SRLL ERIVF+  +I+D +A ++ AQLL L+A++  +EI LY
Sbjct: 6   IPHVIERTPAGERSFDIFSRLLNERIVFLGTEIDDGVANVVMAQLLHLQADSSDQEIGLY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TA +AIYDTMQF++P I+T+CMGQAAS  ++LL+AG +G R  L ++R+LLH
Sbjct: 66  INSPGGSTTAMLAIYDTMQFLRPTIATYCMGQAASAAAVLLAAGTEGHRHVLAHSRVLLH 125

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPS   +G  SD+   A +I++++ +   I  K+ G+T E + +  DRD I +A EA D+
Sbjct: 126 QPSTQGNGTISDLALQAAEIMRVRSQTESILSKHTGQTVERLRRDTDRDRIFTAQEAIDY 185

Query: 199 GVVDKVL 205
           G+ D V+
Sbjct: 186 GLADTVV 192


>gi|195644476|gb|ACG41706.1| hypothetical protein [Zea mays]
          Length = 292

 Score =  198 bits (504), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 70/198 (35%), Positives = 124/198 (62%), Gaps = 4/198 (2%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
           SE+    L+P ++  T  G  + D+ + LL  RI+F+   I   +A  + +QL+ L A +
Sbjct: 98  SENENPPLMPAIM--TPGG--ALDLATVLLGNRIIFIGQYINSQVAQRVISQLVTLAAID 153

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
            + +I +Y+N PGG + + +AIYD M +IKP + T C G  AS  +++L+ GEKGMR+A+
Sbjct: 154 EEADILIYLNCPGGSLYSILAIYDCMSWIKPKVGTVCFGVVASQAAIILAGGEKGMRYAM 213

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           PNAR+++HQP GG  G   ++ R   + +  + ++++++    G+  + V++  +RD  M
Sbjct: 214 PNARVMIHQPQGGSEGNVEEVRRQVGETIYARDKVDKMFAAFTGQPLDMVQQWTERDRFM 273

Query: 191 SASEACDWGVVDKVLMSR 208
           S+SEA D+G++D +L +R
Sbjct: 274 SSSEAMDFGLLDALLETR 291


>gi|33862588|ref|NP_894148.1| ATP-dependent Clp protease-like protein [Prochlorococcus marinus
           str. MIT 9313]
 gi|124023702|ref|YP_001018009.1| ATP-dependent Clp protease-like protein [Prochlorococcus marinus
           str. MIT 9303]
 gi|33634504|emb|CAE20490.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9313]
 gi|123963988|gb|ABM78744.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9303]
          Length = 223

 Score =  198 bits (504), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 73/192 (38%), Positives = 115/192 (59%), Gaps = 19/192 (9%)

Query: 41  KERIVFVT----------GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV----- 85
           KERIV++            Q+   +  LI AQLL+LE +NP+K I  YINS G       
Sbjct: 27  KERIVYLGLPLFSDDDAKRQLGMDVTELIIAQLLYLEFDNPEKPIYFYINSTGTSWYTGD 86

Query: 86  ----VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
                T   AI DT++++KPP+ T C+GQA    +++LSAG KG R ALP+A I+LHQP 
Sbjct: 87  AVGFETEAFAICDTLRYVKPPVHTICIGQAMGTAAVILSAGTKGHRAALPHASIVLHQPR 146

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            G  GQA+DI+  A++++  K+ + +I   N G++ E++ K  DR   ++  +A ++G++
Sbjct: 147 SGAQGQATDIQIRAKEVLHNKQAMLKILASNTGRSIEQLSKDSDRMSYLTPGDAVEYGII 206

Query: 202 DKVLMSRIDIEE 213
           D++L SR ++  
Sbjct: 207 DRILSSRKELPS 218


>gi|226509256|ref|NP_001140712.1| hypothetical protein LOC100272787 [Zea mays]
 gi|194689904|gb|ACF79036.1| unknown [Zea mays]
 gi|194700704|gb|ACF84436.1| unknown [Zea mays]
 gi|194702420|gb|ACF85294.1| unknown [Zea mays]
 gi|194703926|gb|ACF86047.1| unknown [Zea mays]
 gi|194708092|gb|ACF88130.1| unknown [Zea mays]
          Length = 292

 Score =  198 bits (504), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 70/198 (35%), Positives = 124/198 (62%), Gaps = 4/198 (2%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
           SE+    L+P ++  T  G  + D+ + LL  RI+F+   I   +A  + +QL+ L A +
Sbjct: 98  SENENPPLMPAIM--TPGG--ALDLATVLLGNRIIFIGQYINSQVAQRVISQLVTLAAID 153

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
            + +I +Y+N PGG + + +AIYD M +IKP + T C G  AS  +++L+ GEKGMR+A+
Sbjct: 154 EEADILIYLNCPGGSLYSILAIYDCMSWIKPKVGTVCFGVVASQAAIILAGGEKGMRYAM 213

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           PNAR+++HQP GG  G   ++ R   + +  + ++++++    G+  + V++  +RD  M
Sbjct: 214 PNARVMIHQPQGGSEGNVEEVRRQVGETIYARDKVDKMFAAFTGQPLDMVQQWTERDRFM 273

Query: 191 SASEACDWGVVDKVLMSR 208
           S+SEA D+G++D +L +R
Sbjct: 274 SSSEAMDFGLLDALLETR 291


>gi|159161275|ref|YP_001542553.1| clp protease proteolytic subunit [Cuscuta exaltata]
 gi|158938700|gb|ABW83717.1| clp protease proteolytic subunit [Cuscuta exaltata]
          Length = 202

 Score =  198 bits (504), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 75/190 (39%), Positives = 116/190 (61%), Gaps = 4/190 (2%)

Query: 19  VPMVVEQ--TNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  Q   +R     DIY+RL +ER +F+   ++  +A  +    ++L  ++  K+I 
Sbjct: 5   VPRVRFQYRRDRSRVWIDIYNRLYRERCLFLAHVVDSQIANQLVGLFIYLGVQDETKDIF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR-I 135
           L+INSPGG + +G AIYDTMQF++P I T C+G AASMGS LL  G    R A P+A  +
Sbjct: 65  LFINSPGGGIISGFAIYDTMQFVRPDIQTICVGLAASMGSFLLVGGAITKRLAFPHAWRV 124

Query: 136 LLHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           ++HQP S  F  Q  +    A++++K++  L E+YV+  GK    + + ++RD  +SA+E
Sbjct: 125 MIHQPMSAFFETQTVEAILEAEELLKLRESLAEVYVQRTGKPGWVIAEDMERDVFLSATE 184

Query: 195 ACDWGVVDKV 204
           A  +G+VD V
Sbjct: 185 AQAYGIVDVV 194


>gi|7524625|ref|NP_042379.1| ATP-dependent Clp protease proteolytic subunit [Pinus thunbergii]
 gi|1168979|sp|P41609|CLPP_PINTH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|1262619|dbj|BAA04336.1| ATP-dependent protease subunit [Pinus thunbergii]
          Length = 196

 Score =  198 bits (504), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 71/191 (37%), Positives = 112/191 (58%), Gaps = 3/191 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+RL +ER++F+   I   +A  +   +++L AE+  K+I 
Sbjct: 5   VPKVPFRAPGDEDATWVDLYNRLYRERLLFLAQDINHEIANQLMGLMVYLSAEDSNKDIF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            +IN PGG V  G+ ++D MQ I P + T CMG AASMGS +L  GE   R ALP+ARI+
Sbjct: 65  SFINCPGGSVIPGVGLFDMMQAIVPDVHTICMGVAASMGSFILIGGEMPKRIALPHARIM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  + G A+D    ++ +  ++  +   Y++   +  E +++ L+RD  MSA+EA
Sbjct: 125 IHQPASSYYDGSAADFHNESKHVTMLRDYITRCYIERTDQPGEVIQRDLNRDVFMSATEA 184

Query: 196 CDWGVVDKVLM 206
             +G+VD V  
Sbjct: 185 QAYGIVDVVAE 195


>gi|242066888|ref|XP_002454733.1| hypothetical protein SORBIDRAFT_04g036413 [Sorghum bicolor]
 gi|241934564|gb|EES07709.1| hypothetical protein SORBIDRAFT_04g036413 [Sorghum bicolor]
          Length = 276

 Score =  198 bits (503), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 71/198 (35%), Positives = 124/198 (62%), Gaps = 4/198 (2%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
           SE+    L+P ++  T  G  + D+ + LL  R++F+   I   +A  + +QL+ L A +
Sbjct: 82  SENENPPLMPAIM--TPGG--ALDLATVLLGNRVIFIGQYINSQVAQRVISQLVTLAAVD 137

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
            + +I +Y+N PGG + + +AIYD M +IKP + T C G  AS  +++L+ GEKGMR+A+
Sbjct: 138 EEADILIYLNCPGGSLYSILAIYDCMSWIKPKVGTVCFGVVASQAAIILAGGEKGMRYAM 197

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           PNAR+++HQP GG  G   ++ R   + V  + ++++++    G+  + V++  +RD  M
Sbjct: 198 PNARVMIHQPQGGSEGNVEEVRRQVGETVYARDKVDKMFAAFTGQPLDMVQQWTERDRFM 257

Query: 191 SASEACDWGVVDKVLMSR 208
           S+SEA D+G+VD +L +R
Sbjct: 258 SSSEAMDFGLVDALLETR 275


>gi|239978196|ref|ZP_04700720.1| ATP-dependent Clp protease [Streptomyces albus J1074]
 gi|291450088|ref|ZP_06589478.1| ATP-dependent Clp protease proteolytic subunit 5 [Streptomyces
           albus J1074]
 gi|291353037|gb|EFE79939.1| ATP-dependent Clp protease proteolytic subunit 5 [Streptomyces
           albus J1074]
          Length = 212

 Score =  198 bits (503), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 68/193 (35%), Positives = 121/193 (62%), Gaps = 2/193 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P   E+T++G R+ D YS+L  ERIVF+   +++   + + AQ L LE  +P ++I LY
Sbjct: 14  LPEFTERTSQGSRTQDPYSKLFSERIVFLGRPVDEAGVSDVMAQFLHLEHADPDRDIQLY 73

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  +A  A+YDT+Q++   ++T C+GQA S  ++LL+AG  G R  LP +R ++ 
Sbjct: 74  INSPGGSFSAMTALYDTLQYVSCDVATTCLGQANSAAAVLLAAGAPGKRLMLPGSRAVIR 133

Query: 139 QP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           QP  +    GQ SD+   A ++++++  L E+  ++ G+  + + + ++RD  + A +A 
Sbjct: 134 QPALADPVQGQVSDLAIEAAELLRMRALLVELLARHTGRDRDRIAQDIERDLHLDARQAV 193

Query: 197 DWGVVDKVLMSRI 209
           ++G+ D ++ SR 
Sbjct: 194 EYGLADHLVGSRK 206


>gi|221055665|ref|XP_002258971.1| ATP-dependent CLP protease [Plasmodium knowlesi strain H]
 gi|193809041|emb|CAQ39744.1| ATP-dependent CLP protease, putative [Plasmodium knowlesi strain H]
          Length = 372

 Score =  198 bits (503), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 72/193 (37%), Positives = 115/193 (59%), Gaps = 4/193 (2%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G++P V    +  +   D+     K+RI+++T +I       + +QLL+L+  N   +I 
Sbjct: 169 GIIPRVE---DIKDMKKDLKLFFFKKRIIYLTEEINKKTTDEMISQLLYLDNINHD-DIK 224

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG +  G+AI D   +IK  I T   G  ASM S++L++G+KG R +LPN RI+
Sbjct: 225 IYINSPGGSINEGLAILDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIM 284

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP G   GQ  DIE   ++I+ +K+ L         +T E +EK  DRDH M+A EA 
Sbjct: 285 IHQPLGNAFGQPQDIEIQTKEILYLKKLLYNYLSTFTNQTTETIEKDSDRDHYMNALEAK 344

Query: 197 DWGVVDKVLMSRI 209
            +G++D+V+ +++
Sbjct: 345 RYGIIDEVIETKL 357


>gi|228016377|gb|ACP51210.1| ATP-dependent Clp protease proteolytic subunit [Pinus thunbergii]
          Length = 196

 Score =  198 bits (503), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 70/191 (36%), Positives = 112/191 (58%), Gaps = 3/191 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+RL +ER++F+   I   +A  +   +++L AE+  K+I 
Sbjct: 5   VPKVPFRAPGDEDATWVDLYNRLYRERLLFLAQDINHEIANQLMGLMVYLSAEDSNKDIF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            +IN PGG V  G+ ++D MQ I P + T CMG AASMGS +L  GE   R ALP+AR++
Sbjct: 65  SFINCPGGSVIPGVGLFDMMQAIVPDVHTICMGVAASMGSFILIGGEMPKRIALPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  + G A+D    ++ +  ++  +   Y++   +  E +++ L+RD  MSA+EA
Sbjct: 125 IHQPASSYYDGSAADFHNESKHVTMLRDYITRCYIERTDQPGEVIQRDLNRDVFMSATEA 184

Query: 196 CDWGVVDKVLM 206
             +G+VD V  
Sbjct: 185 QAYGIVDVVAE 195


>gi|29565593|ref|NP_817171.1| ATP-dependent Clp protease proteolytic subunit [Pinus koraiensis]
 gi|237688459|ref|YP_002905078.1| ATP-dependent Clp protease proteolytic subunit [Picea sitchensis]
 gi|237688591|ref|YP_002905208.1| ATP-dependent Clp protease proteolytic subunit [Pinus gerardiana]
 gi|237688659|ref|YP_002905275.1| ATP-dependent Clp protease proteolytic subunit [Pinus krempfii]
 gi|324986358|ref|YP_004276230.1| ATP-dependent Clp protease proteolytic subunit [Pinus lambertiana]
 gi|68052195|sp|Q85X43|CLPP_PINKO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|29469692|gb|AAO74020.1| ATP-dependent protease subunit [Pinus koraiensis]
 gi|226875288|gb|ACO89027.1| ATP-dependent Clp protease proteolytic subunit [Picea sitchensis]
 gi|226876052|gb|ACO89308.1| ATP-dependent Clp protease proteolytic subunit [Pinus gerardiana]
 gi|226951117|gb|ACO94180.1| ATP-dependent Clp protease proteolytic subunit [Pinus krempfii]
 gi|228016125|gb|ACP50962.1| ATP-dependent Clp protease proteolytic subunit [Pinus sibirica]
 gi|228016182|gb|ACP51018.1| ATP-dependent Clp protease proteolytic subunit [Pinus squamata]
 gi|228016247|gb|ACP51082.1| ATP-dependent Clp protease proteolytic subunit [Pinus strobus]
 gi|228016623|gb|ACP51452.1| ATP-dependent Clp protease proteolytic subunit [Pinus albicaulis]
 gi|228016756|gb|ACP51583.1| ATP-dependent Clp protease proteolytic subunit [Pinus armandii]
 gi|228016879|gb|ACP51704.1| ATP-dependent Clp protease proteolytic subunit [Pinus ayacahuite]
 gi|228017126|gb|ACP51947.1| ATP-dependent Clp protease proteolytic subunit [Pinus cembra]
 gi|228017247|gb|ACP52066.1| ATP-dependent Clp protease proteolytic subunit [Pinus flexilis]
 gi|228017313|gb|ACP52131.1| ATP-dependent Clp protease proteolytic subunit [Pinus lambertiana]
 gi|228017506|gb|ACP52321.1| ATP-dependent Clp protease proteolytic subunit [Pinus monticola]
 gi|228017569|gb|ACP52383.1| ATP-dependent Clp protease proteolytic subunit [Pinus parviflora
           var. pentaphylla]
 gi|228017633|gb|ACP52446.1| ATP-dependent Clp protease proteolytic subunit [Pinus peuce]
 gi|257042530|gb|ACV32804.1| ATP-dependent Clp protease proteolytic subunit [Pinus monticola]
 gi|257042558|gb|ACV32831.1| ATP-dependent Clp protease proteolytic subunit [Pinus monticola]
 gi|257042587|gb|ACV32859.1| ATP-dependent Clp protease proteolytic subunit [Pinus monticola]
 gi|257042617|gb|ACV32888.1| ATP-dependent Clp protease proteolytic subunit [Pinus monticola]
 gi|257042645|gb|ACV32915.1| ATP-dependent Clp protease proteolytic subunit [Pinus monticola]
 gi|257042673|gb|ACV32942.1| ATP-dependent Clp protease proteolytic subunit [Pinus monticola]
 gi|257042702|gb|ACV32970.1| ATP-dependent Clp protease proteolytic subunit [Pinus monticola]
 gi|257042730|gb|ACV32997.1| ATP-dependent Clp protease proteolytic subunit [Pinus monticola]
 gi|257042757|gb|ACV33023.1| ATP-dependent Clp protease proteolytic subunit [Pinus monticola]
 gi|257042785|gb|ACV33050.1| ATP-dependent Clp protease proteolytic subunit [Pinus monticola]
 gi|323514207|gb|ADX89754.1| ATP-dependent Clp protease proteolytic subunit [Pinus lambertiana]
          Length = 196

 Score =  198 bits (503), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 72/191 (37%), Positives = 112/191 (58%), Gaps = 3/191 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+RL +ER++F+   I   +A  +   +++L AE+  K+I 
Sbjct: 5   VPKVPFRAPGDEDATWVDLYNRLYRERLLFLAQDINHEIANQLMGLMVYLSAEDANKDIF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            +IN PGG V  G+ ++D MQ I P + T CMG AASMGS +L  GE   R ALP+AR++
Sbjct: 65  SFINCPGGSVIPGVGLFDMMQVIVPNVHTICMGVAASMGSFILIGGEITKRMALPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  + G A++    A+ I  ++  + + Y++      E +++ LDRD  MSA+EA
Sbjct: 125 IHQPASSYYDGPAAEFHNEAKHITMLRNYITKCYIERTDNPEEVIQRDLDRDVFMSATEA 184

Query: 196 CDWGVVDKVLM 206
             +G+VD V  
Sbjct: 185 RAYGIVDTVAE 195


>gi|116253257|ref|YP_769095.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|116243122|sp|Q1MDH4|CLPP3_RHIL3 RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
           AltName: Full=Endopeptidase Clp 3
 gi|115257905|emb|CAK09003.1| putative ATP-dependent Clp protease [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 194

 Score =  198 bits (503), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 75/173 (43%), Positives = 110/173 (63%), Gaps = 1/173 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           L K R +F+ G I   +A  +C+QL+ L A    ++I +Y+NSPGG V +G +I+D ++F
Sbjct: 23  LFKSRSIFIYGPINQELAQKVCSQLVALAA-ASDEDIRIYVNSPGGHVESGDSIHDMIKF 81

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           IKP +     G  AS G+L+  A  K  R  LPN R LLHQPSGG  G ASDIE  A++I
Sbjct: 82  IKPKVWMIGTGWVASAGALIYVATPKERRLCLPNTRFLLHQPSGGTRGMASDIEIQAREI 141

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           +K+  RLN I     G+  ++++K  DRD+ +SA EA D+G+V +++ S+ DI
Sbjct: 142 IKMNERLNRIMAAATGQPLDKIDKDTDRDYWLSAEEAKDYGLVSRIVTSQADI 194


>gi|126696837|ref|YP_001091723.1| ATP-dependent Clp protease-like protein [Prochlorococcus marinus
           str. MIT 9301]
 gi|126543880|gb|ABO18122.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9301]
          Length = 220

 Score =  198 bits (503), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 89/214 (41%), Positives = 125/214 (58%), Gaps = 19/214 (8%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVT----------GQIEDHMATLICAQLLFLEAE 69
           P   E T       D+ S LLKERIV++            Q+   +  LI AQLL+LE E
Sbjct: 6   PYYGENTVMRTPPPDLPSLLLKERIVYLGLPLFSDDDAKRQLGMDVTELIIAQLLYLEFE 65

Query: 70  NPQKEISLYINSPGGV---------VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           +P+K I  YINS G            T   AI DT+ +IKPP+ T C+GQA    +++LS
Sbjct: 66  DPEKPIYFYINSTGTSWYTGDAVGFETEAFAICDTISYIKPPVHTICIGQAMGTAAVILS 125

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           +G KG R ALP+A I+LHQP  G  GQA+DI+  A++++K K+ + EI  +N GKT EE+
Sbjct: 126 SGTKGHRAALPHASIVLHQPISGARGQATDIQIRAEEVLKNKKSMLEILSRNTGKTIEEL 185

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
            K  DR   ++  EA D+GV+D++L S+ D+  K
Sbjct: 186 SKDSDRMSYLNPQEALDYGVIDRILTSQKDLPNK 219


>gi|9758729|dbj|BAB09167.1| ATP-dependent Clp protease-like protein [Arabidopsis thaliana]
          Length = 301

 Score =  198 bits (503), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 84/192 (43%), Positives = 123/192 (64%), Gaps = 10/192 (5%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           E   RG  S D+   LL+ERIVF+   I+D +A  I +QLL L+A++P+K+I L+INSPG
Sbjct: 70  ESAIRGAES-DVMGLLLRERIVFLGSSIDDFVADAIMSQLLLLDAKDPKKDIKLFINSPG 128

Query: 84  GV---------VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           G           +A MAIYD +Q ++  +ST  +G AAS  S++L AG KG RFA+PN R
Sbjct: 129 GSLRLNVVIVWFSATMAIYDVVQLVRADVSTIALGIAASTASIILGAGTKGKRFAMPNTR 188

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++HQP GG SGQA D+E  A++++  K  +  I      +++E+V K +DRD  MS  E
Sbjct: 189 IMIHQPLGGASGQAIDVEIQAKEVMHNKNNVTSIIAGCTSRSFEQVLKDIDRDRYMSPIE 248

Query: 195 ACDWGVVDKVLM 206
           A ++G++D V+ 
Sbjct: 249 AVEYGLIDGVID 260


>gi|78779794|ref|YP_397906.1| ATP-dependent Clp protease-like protein [Prochlorococcus marinus
           str. MIT 9312]
 gi|123969044|ref|YP_001009902.1| ATP-dependent Clp protease-like protein [Prochlorococcus marinus
           str. AS9601]
 gi|78713293|gb|ABB50470.1| Endopeptidase Clp [Prochlorococcus marinus str. MIT 9312]
 gi|123199154|gb|ABM70795.1| Clp protease proteolytic subunit [Prochlorococcus marinus str.
           AS9601]
          Length = 220

 Score =  198 bits (503), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 89/214 (41%), Positives = 125/214 (58%), Gaps = 19/214 (8%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVT----------GQIEDHMATLICAQLLFLEAE 69
           P   E T       D+ S LLKERIV++            Q+   +  LI AQLL+LE E
Sbjct: 6   PYYGENTVMRTPPPDLPSLLLKERIVYLGLPLFSDDDAKRQLGMDVTELIIAQLLYLEFE 65

Query: 70  NPQKEISLYINSPGGV---------VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           +P+K I  YINS G            T   AI DT+ +IKPP+ T C+GQA    +++LS
Sbjct: 66  DPEKPIYFYINSTGTSWYTGDAVGFETEAFAICDTISYIKPPVHTICIGQAMGTAAVILS 125

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           +G KG R ALP+A I+LHQP  G  GQA+DI+  A++++K K+ + EI  +N GKT EE+
Sbjct: 126 SGTKGQRAALPHASIVLHQPISGARGQATDIQIRAEEVLKNKKSMLEILSRNTGKTIEEL 185

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
            K  DR   ++  EA D+GV+D++L S+ D+  K
Sbjct: 186 SKDSDRMSYLNPQEALDYGVIDRILTSQKDLPNK 219


>gi|115453497|ref|NP_001050349.1| Os03g0411500 [Oryza sativa Japonica Group]
 gi|57222443|gb|AAO37504.2| putative clp-like energy-dependent protease [Oryza sativa Japonica
           Group]
 gi|108708774|gb|ABF96569.1| Clp protease family protein, expressed [Oryza sativa Japonica
           Group]
 gi|113548820|dbj|BAF12263.1| Os03g0411500 [Oryza sativa Japonica Group]
 gi|215678629|dbj|BAG92284.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215765082|dbj|BAG86779.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 259

 Score =  198 bits (503), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 71/198 (35%), Positives = 124/198 (62%), Gaps = 4/198 (2%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
           SE+    L+P ++  T  G  + D+ + LL  RI+F+   I   +A  + +QL+ L A +
Sbjct: 65  SENENPPLMPAIM--TPAG--ALDLATVLLGNRIIFIGQYINSQVAQRVISQLVTLAAVD 120

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
            + +I +Y+N PGG + + +AIYD M +IKP + T C G  AS  +++L+ GEKGMR+A+
Sbjct: 121 EEADILIYLNCPGGSLYSILAIYDCMSWIKPKVGTVCFGVVASQAAIILAGGEKGMRYAM 180

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           PNAR+++HQP G   G   ++ R   + +  + ++++++    G+T + V++  +RD  M
Sbjct: 181 PNARVMIHQPQGVSEGNVEEVRRQVGETIYARDKVDKMFAAFTGQTLDMVQQWTERDRFM 240

Query: 191 SASEACDWGVVDKVLMSR 208
           S+SEA D+G+VD +L +R
Sbjct: 241 SSSEAMDFGLVDALLETR 258


>gi|228017379|gb|ACP52196.1| ATP-dependent Clp protease proteolytic subunit [Larix occidentalis]
          Length = 196

 Score =  197 bits (502), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 70/191 (36%), Positives = 113/191 (59%), Gaps = 3/191 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+RL +ER++F+   I   +A  +   +++L AE+  K++ 
Sbjct: 5   VPKVPFRAPGDEDANWVDLYNRLYRERLLFLAQDINHEIANQLMGLMVYLSAEDANKDMF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            ++N PGG V  G+ I+D MQ I P + T CMG AASMGS +L  GE   R ALP+AR++
Sbjct: 65  SFLNCPGGSVIPGVGIFDVMQIIVPDVHTICMGVAASMGSFILIGGEITKRIALPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  + G A+D    ++ +  ++  + + Y++  G   E +++ L+RD  MSA+EA
Sbjct: 125 IHQPASTYYDGPAADFHNESKHVTMLRDYITKCYIERTGTPGEVIQRDLNRDVFMSATEA 184

Query: 196 CDWGVVDKVLM 206
             +G+VD V  
Sbjct: 185 QAYGIVDAVAE 195


>gi|298491710|ref|YP_003721887.1| endopeptidase Clp ['Nostoc azollae' 0708]
 gi|298233628|gb|ADI64764.1| Endopeptidase Clp ['Nostoc azollae' 0708]
          Length = 220

 Score =  197 bits (502), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 67/203 (33%), Positives = 119/203 (58%), Gaps = 15/203 (7%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP  +  +N+ +    I  R+ +ERI+F+   +   +A  + + +L+L++E+  K I LY
Sbjct: 9   VPYNIPGSNQWQ-WISIGQRMTQERILFLNQPLTTSLANSLISSILYLDSEDQSKPIYLY 67

Query: 79  INSPGG--------------VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           INS G                + + +AIYDTMQ+IK  + T C GQA  M +L+LS+G K
Sbjct: 68  INSLGDPVLAGRIDETAGMMSIKSCLAIYDTMQYIKSEVVTICFGQAVGMAALILSSGAK 127

Query: 125 GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
           G R +LP+A I L Q      GQA+DI+ +A+++++ +  + +I+ +N G+  +++ K  
Sbjct: 128 GKRVSLPHASIALTQFQVAAQGQATDIQVNAEEVLRKRAIILDIFSQNTGQPADKITKDS 187

Query: 185 DRDHIMSASEACDWGVVDKVLMS 207
           +R   M+  EA ++G++D+VL +
Sbjct: 188 ERIFYMTPLEAKEYGLIDRVLEN 210


>gi|295137023|ref|YP_003587570.1| ATP-dependent Clp protease proteolytic subunit [Pisum sativum]
 gi|293338595|gb|ADE43568.1| ATP-dependent Clp protease proteolytic subunit [Pisum sativum]
          Length = 199

 Score =  197 bits (502), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 68/192 (35%), Positives = 114/192 (59%), Gaps = 3/192 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    +     D+Y +L  +R++F+  ++E  ++  +C  +++L  EN  K + 
Sbjct: 5   VPKVGFEVPGDDEASWIDLYHQLFFDRLLFLGQEVESEISNQVCGMMIYLSLENKYKNLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+I SPGG V +G+AI+D MQF++  + T C+G AASM SL+L  GE   R A P+AR++
Sbjct: 65  LFIKSPGGEVLSGLAIFDIMQFVEAEVQTVCVGLAASMASLILLGGEITKRLAFPHARVM 124

Query: 137 LHQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP+     GQ+ +    A +++ I++ +  IY +   K   ++ K LDRD  MSA EA
Sbjct: 125 IHQPASSAYDGQSGECMLEAHELLSIRQTMTNIYCQRTRKPSWQISKDLDRDFFMSAEEA 184

Query: 196 CDWGVVDKVLMS 207
             +G++D +  S
Sbjct: 185 QAYGIIDTIADS 196


>gi|78185115|ref|YP_377550.1| ATP-dependent Clp protease-like protein [Synechococcus sp. CC9902]
 gi|78169409|gb|ABB26506.1| Endopeptidase Clp [Synechococcus sp. CC9902]
          Length = 223

 Score =  197 bits (502), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 78/191 (40%), Positives = 115/191 (60%), Gaps = 19/191 (9%)

Query: 41  KERIVFVT----------GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV----- 85
           KERIV++            Q+   +  LI AQLLFLE ++P+K I  YINS G       
Sbjct: 27  KERIVYLGLPLFSDDDAKRQMGIDVTELIIAQLLFLEFDDPEKPIYFYINSTGTSWYSGD 86

Query: 86  ----VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
                T   AI DT++++KPP+ T C+GQA    +++LSAG KG R ALP++ I+LHQP 
Sbjct: 87  AIGFETEAFAICDTLRYVKPPVHTICIGQAMGTAAVILSAGTKGQRAALPHSSIVLHQPR 146

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            G  GQA+DI+  A++++  K+ + EI   N G+T EE+ K  DR   ++  EA ++G++
Sbjct: 147 SGAQGQATDIQIRAKEVLHNKQAMLEILSNNTGRTVEELSKNSDRMSYLTPHEAVEFGLI 206

Query: 202 DKVLMSRIDIE 212
           D+VL SR D+ 
Sbjct: 207 DRVLSSRKDLP 217


>gi|11497551|ref|NP_054959.1| ATP-dependent Clp protease proteolytic subunit [Spinacia oleracea]
 gi|18203258|sp|Q9M3K5|CLPP_SPIOL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|7636132|emb|CAB88752.1| ATP-dependent protease proteolytic subunit [Spinacia oleracea]
          Length = 196

 Score =  197 bits (502), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 72/189 (38%), Positives = 119/189 (62%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     D+Y+RL +ER++F+  +++  ++  +   +++L  E+  K++ 
Sbjct: 5   VPKVPFRSPGEEDASWVDVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYDTMQF++P + T CMG AASMGS +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGVAIYDTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  L ++Y +  GK    V + ++RD  MSA+EA
Sbjct: 125 IHQPASSFYEAQTGEFLLEAEELLKLRETLTKVYGQRTGKPLWVVSEDMERDVFMSATEA 184

Query: 196 CDWGVVDKV 204
              G++D V
Sbjct: 185 QAHGIIDLV 193


>gi|189162296|ref|YP_001936542.1| ATP-dependent Clp protease proteolytic subunit [Fagopyrum
           esculentum subsp. ancestrale]
 gi|166065382|gb|ABY79757.1| ATP-dependent Clp protease proteolytic subunit [Fagopyrum
           esculentum subsp. ancestrale]
          Length = 210

 Score =  197 bits (502), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 69/201 (34%), Positives = 117/201 (58%), Gaps = 3/201 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+RL + R++F+T +I   ++  +   +++L  E+  ++  
Sbjct: 5   VPKVPFRLPGDEDATWVDVYNRLYRSRLLFLTQEITTEISNYLIGLMVYLSIEDQTQDFY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+IN PGG V  G+AI+D MQ + P I T CMG AASMGS +L  GE   RFA P+AR++
Sbjct: 65  LFINCPGGWVLPGIAIFDAMQLVLPDIYTICMGIAASMGSFILVGGEITKRFAFPHARVM 124

Query: 137 LHQPSGGF-SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP+  F  G   +    A++++ ++  L ++Y +  G+ +  + + L+RD  MSA EA
Sbjct: 125 IHQPASSFHEGSTGECMMEAEELLTLRETLTKVYAQRTGQPFGVLTEDLERDVFMSAREA 184

Query: 196 CDWGVVDKVLMSRIDIEEKSK 216
              G++D +    ++I +  K
Sbjct: 185 QAHGIIDLIAKEGVEIIKTEK 205


>gi|116072310|ref|ZP_01469577.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           BL107]
 gi|116064832|gb|EAU70591.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           BL107]
          Length = 222

 Score =  197 bits (502), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 78/191 (40%), Positives = 115/191 (60%), Gaps = 19/191 (9%)

Query: 41  KERIVFVT----------GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV----- 85
           KERIV++            Q+   +  LI AQLLFLE ++P+K I  YINS G       
Sbjct: 27  KERIVYLGLPLFSDDDAKRQMGIDVTELIIAQLLFLEFDDPEKPIYFYINSTGTSWYSGD 86

Query: 86  ----VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
                T   AI DT++++KPP+ T C+GQA    +++LSAG KG R ALP++ I+LHQP 
Sbjct: 87  AIGFETEAFAICDTLRYVKPPVHTICIGQAMGTAAVILSAGTKGQRAALPHSSIVLHQPR 146

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            G  GQA+DI+  A++++  K+ + EI   N G+T EE+ K  DR   ++  EA ++G++
Sbjct: 147 SGAQGQATDIQIRAKEVLHNKQAMLEILSNNTGRTVEELSKNSDRMSYLTPHEAVEFGLI 206

Query: 202 DKVLMSRIDIE 212
           D+VL SR D+ 
Sbjct: 207 DRVLSSRKDLP 217


>gi|126657142|ref|ZP_01728313.1| ATP-dependent protease; ClpP [Cyanothece sp. CCY0110]
 gi|126621685|gb|EAZ92395.1| ATP-dependent protease; ClpP [Cyanothece sp. CCY0110]
          Length = 147

 Score =  197 bits (502), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 84/147 (57%), Positives = 111/147 (75%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P V+E + RGER++DIYSRLL+ERIVF+  ++ D  + LI AQLLFLEAE+P K+I L
Sbjct: 1   MIPTVIETSGRGERAFDIYSRLLRERIVFLGQEVRDENSNLIVAQLLFLEAEDPDKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V+AG+ I+DTM  I+P + T C+G AASMG+ LLSAG KG R +LPN+RI++
Sbjct: 61  YINSPGGSVSAGLGIFDTMNQIRPDVCTICIGLAASMGAFLLSAGAKGKRMSLPNSRIMI 120

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRR 164
           HQP GG  GQA+DIE  A+     +  
Sbjct: 121 HQPLGGAQGQATDIEIQAKKFCISRDS 147


>gi|228015993|gb|ACP50832.1| ATP-dependent Clp protease proteolytic subunit [Pinus resinosa]
          Length = 196

 Score =  197 bits (502), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 70/191 (36%), Positives = 112/191 (58%), Gaps = 3/191 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+RL +ER++F+   I   +A  +   +++L AE+  K+I 
Sbjct: 5   VPKVPFRAPGDEDATWVDLYNRLYRERLLFLAQDINHEIANQLMGLMVYLSAEDSNKDIF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            +IN PGG V  G+ ++D MQ I P + T CMG AASMGS +L  GE   R ALP+AR++
Sbjct: 65  SFINCPGGSVIPGVGLFDMMQAIVPDVHTICMGVAASMGSFILIGGEMPKRIALPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  + G A+D    ++ +  ++  +   Y++   +  E +++ L+RD  MSA+EA
Sbjct: 125 IHQPASSYYDGSAADFHNESKHVTMLRDYITRCYIERTEQPGEVIQRDLNRDVFMSATEA 184

Query: 196 CDWGVVDKVLM 206
             +G+VD V  
Sbjct: 185 QAYGIVDVVAE 195


>gi|324986501|ref|YP_004276371.1| ATP-dependent Clp protease proteolytic subunit [Pinus nelsonii]
 gi|323522689|gb|ADX94937.1| ATP-dependent Clp protease proteolytic subunit [Pinus nelsonii]
          Length = 196

 Score =  197 bits (502), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 72/191 (37%), Positives = 112/191 (58%), Gaps = 3/191 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+RL +ER++F+   I   +A  +   +++L AE+  K+I 
Sbjct: 5   VPKVPFRAPGDEDATWVDLYNRLYRERLLFLAQDINHEIANQLMGLMVYLSAEDANKDIF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            +IN PGG V  G+ ++D MQ I P + T CMG AASMGS +L  GE   R ALP+AR++
Sbjct: 65  SFINCPGGSVIPGVGLFDMMQVIVPNVHTICMGVAASMGSFILIGGEITKRMALPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  + G A++    A+ I  ++  + + Y++      E +++ LDRD  MSA+EA
Sbjct: 125 IHQPASSYYDGPAAEFHNEAKHITMLRTYITKCYIERTDNPEEVIQRDLDRDVFMSATEA 184

Query: 196 CDWGVVDKVLM 206
             +G+VD V  
Sbjct: 185 QAYGIVDTVAE 195


>gi|323455402|gb|EGB11270.1| hypothetical protein AURANDRAFT_21676 [Aureococcus anophagefferens]
          Length = 221

 Score =  197 bits (501), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 75/183 (40%), Positives = 110/183 (60%), Gaps = 9/183 (4%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------G 84
           D+ S LL  RIV++   +   +  LI A+LL+L  E+P K ++LYINSPG         G
Sbjct: 21  DLASLLLHNRIVYLGMPMVSAVTELIVAELLYLNYESPTKPVTLYINSPGTVNSQGQSVG 80

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
             T   AI D M++IKPP+ T C+GQA    ++LL+ GEKG RF LPNA I+LHQP    
Sbjct: 81  FETEAFAIADCMKYIKPPVQTICVGQAFGAAAMLLAQGEKGKRFCLPNASIMLHQPRSQA 140

Query: 145 SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            GQASDI   A++++  ++   E+  + CG++ +EV     R   +   EA ++G++DKV
Sbjct: 141 RGQASDIAIRAREVMSNRKVSCELMARACGRSVDEVMADASRTKYLQPDEAVEYGLIDKV 200

Query: 205 LMS 207
           L +
Sbjct: 201 LHN 203


>gi|291443095|ref|ZP_06582485.1| ATP-dependent Clp protease proteolytic subunit 5 [Streptomyces
           roseosporus NRRL 15998]
 gi|291346042|gb|EFE72946.1| ATP-dependent Clp protease proteolytic subunit 5 [Streptomyces
           roseosporus NRRL 15998]
          Length = 217

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 84/193 (43%), Positives = 126/193 (65%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G R+ D YS+LL ERIVF+   I+D  A+ + AQL++LE  +P + +SL
Sbjct: 25  VLPEFTERTATGTRTQDPYSKLLSERIVFLGSPIDDTAASDLIAQLMYLEHADPDRPVSL 84

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG   A  A+YDTMQF+   + TFC+GQA S  + LL+AG KG R ALP AR+++
Sbjct: 85  YINSPGGSFQAMAAVYDTMQFLTCEVETFCLGQAGSYAAALLAAGAKGRRHALPGARVVI 144

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
            QP+      GQ SD+E HA+++V+ +     + V++ G+T E++   ++RD I+ A  A
Sbjct: 145 QQPALEEPMRGQPSDLEIHARELVRTREMFAAMLVRHTGRTAEQITADIERDTILDAKAA 204

Query: 196 CDWGVVDKVLMSR 208
              G+VD V+ +R
Sbjct: 205 LAHGLVDHVVENR 217


>gi|302770831|ref|XP_002968834.1| hypothetical protein SELMODRAFT_91162 [Selaginella moellendorffii]
 gi|302784736|ref|XP_002974140.1| hypothetical protein SELMODRAFT_100139 [Selaginella moellendorffii]
 gi|300158472|gb|EFJ25095.1| hypothetical protein SELMODRAFT_100139 [Selaginella moellendorffii]
 gi|300163339|gb|EFJ29950.1| hypothetical protein SELMODRAFT_91162 [Selaginella moellendorffii]
          Length = 221

 Score =  197 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 78/198 (39%), Positives = 121/198 (61%), Gaps = 3/198 (1%)

Query: 11  SEDVFLGL-VPMVVEQ-TNRGERSY-DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           ++ V + L VP V  + ++ G   Y DI++ L +ERIVF+   I+D +A  + A +L+L+
Sbjct: 2   AQVVMMPLGVPKVPYRASSEGSWQYVDIWNVLYQERIVFIGQHIDDDLANRVVATMLYLD 61

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           + +  K +  YI+ PGG +T  MAIYDTM  ++  I+T  +G A  +   LL+AGEKGMR
Sbjct: 62  SVDSSKHLHFYISCPGGSLTPSMAIYDTMGSVRSGIATLALGAAYDIAGFLLAAGEKGMR 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
            A+P ARI L  P G   GQA DI+    ++ +++  L E    N G+  +++ K LDR 
Sbjct: 122 MAMPLARIALQPPEGATRGQADDIQTEVNELGRLRDCLYEQLAINTGQPVDKIHKDLDRM 181

Query: 188 HIMSASEACDWGVVDKVL 205
            I SA EA D+G++DK++
Sbjct: 182 KIFSAQEALDYGLIDKIV 199


>gi|33861869|ref|NP_893430.1| ATP-dependent Clp protease-like protein [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
 gi|33640237|emb|CAE19772.1| Clp protease proteolytic subunit [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 220

 Score =  197 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 87/212 (41%), Positives = 123/212 (58%), Gaps = 19/212 (8%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVT----------GQIEDHMATLICAQLLFLEAE 69
           P   E T       D+ S LLKERIV++            Q+   +  LI AQLL+LE +
Sbjct: 6   PYYGENTAMRTPPPDLPSLLLKERIVYLGLPLFSDDDAKRQLGMDVTELIIAQLLYLEFD 65

Query: 70  NPQKEISLYINSPGGV---------VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           +P K I  YINS G            T   AI DT+ +IKPPI T C+GQA    +++LS
Sbjct: 66  DPDKPIYFYINSTGTSWYTGDAVGFETEAFAICDTINYIKPPIHTICIGQAMGTAAVILS 125

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           +G KG R ALP+A I+LHQP  G  GQA+DI+  A++++K K+ + EI  +N GK+ EE+
Sbjct: 126 SGTKGHRAALPHASIVLHQPISGARGQATDIQIRAEEVLKNKKSMLEILSRNTGKSIEEL 185

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
            K  DR   ++  EA D+GV+D++L S+ D+ 
Sbjct: 186 SKDSDRMSYLNPQEALDYGVIDRILTSQKDLP 217


>gi|294056505|ref|YP_003550163.1| Endopeptidase Clp [Coraliomargarita akajimensis DSM 45221]
 gi|293615838|gb|ADE55993.1| Endopeptidase Clp [Coraliomargarita akajimensis DSM 45221]
          Length = 193

 Score =  197 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 77/175 (44%), Positives = 110/175 (62%), Gaps = 2/175 (1%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I    LK R +F+ G++ D  A  +  +LLFLE E P +EI+ YIN+PGG +TAGMAIYD
Sbjct: 18  IQESFLKNRKIFLWGEVSDKSAKDVTEKLLFLEMEAPGEEITFYINTPGGSITAGMAIYD 77

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP--SGGFSGQASDIE 152
           TM+ I  PI     G AASMGS+LL    KG R   P++R+L+HQP  SG     A DI 
Sbjct: 78  TMKLISSPIKVVVTGMAASMGSILLCGASKGKRVLYPHSRVLIHQPLISGQMVAVAVDIH 137

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
             A+++ +++  LN I  ++ G+  E++EK  DRD  M+A EA D+G+ D+++  
Sbjct: 138 IQAKEMERLRDELNAILAESSGQPLEQIEKDTDRDFYMTAKEAIDYGLADEIVEK 192


>gi|111018526|ref|YP_701498.1| endopeptidase Clp subunit [Rhodococcus jostii RHA1]
 gi|116243125|sp|Q0SGJ6|CLPP4_RHOSR RecName: Full=ATP-dependent Clp protease proteolytic subunit 4;
           AltName: Full=Endopeptidase Clp 4
 gi|110818056|gb|ABG93340.1| endopeptidase Clp subunit [Rhodococcus jostii RHA1]
          Length = 194

 Score =  197 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 92/187 (49%), Positives = 135/187 (72%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V+E+T  GERS+DI+SRLL ERIVF+  +I+D +A ++ AQLL L+A++  +EI LY
Sbjct: 6   IPHVIERTPAGERSFDIFSRLLNERIVFLGTEIDDGVANVVMAQLLHLQADSSDQEIGLY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG  TA +AIYDTMQF++P I+T+CMGQAAS  ++LL+AG KG R  L ++R LLH
Sbjct: 66  INSPGGSTTAMLAIYDTMQFLRPTIATYCMGQAASAAAVLLAAGTKGHRHVLAHSRTLLH 125

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPS   +G  SD+   A +I++++ +   I  K+ G+T E + +  DRD I +A EA ++
Sbjct: 126 QPSTQGNGTISDLALQAAEIMRVRSQTEAILSKHTGQTVERLRRDTDRDRIFTAEEAIEY 185

Query: 199 GVVDKVL 205
           G+ D ++
Sbjct: 186 GLADTLV 192


>gi|182416350|ref|YP_001821416.1| endopeptidase Clp [Opitutus terrae PB90-1]
 gi|177843564|gb|ACB77816.1| Endopeptidase Clp [Opitutus terrae PB90-1]
          Length = 216

 Score =  197 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 75/175 (42%), Positives = 112/175 (64%), Gaps = 2/175 (1%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I  + L++R +F+ G + D  A  +  +LL+LEA +P KEI+ YINSPGG +TAGMA++D
Sbjct: 41  IQKKFLRQRKIFLWGAVTDETAKDMTEKLLYLEAVDPGKEITFYINSPGGSITAGMAVFD 100

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP--SGGFSGQASDIE 152
           TM+ I  PI+    G AASMGS+LL    KG R   P+AR+L+HQP  SG   G A+DI 
Sbjct: 101 TMRLITSPITVIVTGMAASMGSILLCGAPKGRRLLYPHARVLIHQPLISGRMVGPATDIN 160

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
             A+++ KI+  LN+I   + G+  E + +  DRD  ++A EA  +G+ D+++  
Sbjct: 161 IQAKEMEKIRAELNQILADSSGQPIERINQDTDRDFYLNAKEAIAYGLADRIVDK 215


>gi|157413875|ref|YP_001484741.1| ATP-dependent Clp protease-like protein [Prochlorococcus marinus
           str. MIT 9215]
 gi|254526964|ref|ZP_05139016.1| Clp protease [Prochlorococcus marinus str. MIT 9202]
 gi|157388450|gb|ABV51155.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9215]
 gi|221538388|gb|EEE40841.1| Clp protease [Prochlorococcus marinus str. MIT 9202]
          Length = 220

 Score =  197 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 88/214 (41%), Positives = 125/214 (58%), Gaps = 19/214 (8%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVT----------GQIEDHMATLICAQLLFLEAE 69
           P   E T       D+ S LLKERIV++            Q+   +  LI AQLL+LE E
Sbjct: 6   PYYGENTVMRTPPPDLPSLLLKERIVYLGLPLFSDDDAKRQLGMDVTELIIAQLLYLEFE 65

Query: 70  NPQKEISLYINSPGGV---------VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           +P+K I  YINS G            T   AI DT+ +IKPP+ T C+GQA    +++LS
Sbjct: 66  DPEKPIYFYINSTGTSWYTGDAVGFETEAFAICDTISYIKPPVHTICIGQAMGTAAVILS 125

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           +G KG R ALP+A I+LHQP  G  GQA+DI+  A++++K K+ + EI  +N GKT +E+
Sbjct: 126 SGTKGQRAALPHASIVLHQPISGARGQATDIQIRAEEVLKNKKSMLEILSRNTGKTIDEL 185

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
            K  DR   ++  EA D+GV+D++L S+ D+  K
Sbjct: 186 SKDSDRMSYLNPQEALDYGVIDRILTSQKDLPNK 219


>gi|302524704|ref|ZP_07277046.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sp. AA4]
 gi|302433599|gb|EFL05415.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sp. AA4]
          Length = 196

 Score =  197 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 82/191 (42%), Positives = 129/191 (67%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VV ++  GER  D+YS LL ERIV++   I+  +A  + AQLLFLE++NP++EI+LY
Sbjct: 6   IPNVVTRSPGGERIMDVYSHLLSERIVYLGTAIDSGVANALIAQLLFLESDNPEQEINLY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INS GG   A +A+YDTM+FIK P++T C+GQA + G++LL+AG  G R  LP+AR++LH
Sbjct: 66  INSEGGDPAAMLALYDTMRFIKAPVATTCVGQAVATGAVLLAAGAAGRRSVLPHARVVLH 125

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QP+    G   D+   A ++++++ +L EI  ++ G    E+    DRD +  A+ A ++
Sbjct: 126 QPAAQGRGTIPDLILQADEVIRVRTQLEEITSRHTGHDVAELRHDTDRDRVFDAAGAVEY 185

Query: 199 GVVDKVLMSRI 209
           G+ D+V+ +R 
Sbjct: 186 GLADQVIEARP 196


>gi|123966707|ref|YP_001011788.1| ATP-dependent Clp protease-like protein [Prochlorococcus marinus
           str. MIT 9515]
 gi|123201073|gb|ABM72681.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
           9515]
          Length = 220

 Score =  196 bits (499), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 87/214 (40%), Positives = 124/214 (57%), Gaps = 19/214 (8%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVT----------GQIEDHMATLICAQLLFLEAE 69
           P   E T       D+ S LLKERIV++            Q+   +  LI AQLL+LE +
Sbjct: 6   PYYGENTAMRTPPPDLPSLLLKERIVYLGLPLFSDDDAKRQLGMDVTELIIAQLLYLEFD 65

Query: 70  NPQKEISLYINSPGGV---------VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           +P K I  YINS G            T   AI DT+ +IKPPI T C+GQA    +++LS
Sbjct: 66  DPDKPIYFYINSTGTSWYTGDAVGFETEAFAICDTINYIKPPIHTICIGQAMGTAAVILS 125

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           +G KG R ALP+A I+LHQP  G  GQA+DI+  A++++K K+ + EI  +N GK+ E++
Sbjct: 126 SGTKGHRAALPHASIVLHQPISGARGQATDIQIRAEEVLKNKKSMLEILSRNTGKSIEDL 185

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
            K  DR   ++  EA D+GV+D++L S+ D+  K
Sbjct: 186 SKDSDRMSYLNPQEALDYGVIDRILTSQKDLPNK 219


>gi|22299302|ref|NP_682549.1| ATP-dependent Clp protease-like protein [Thermosynechococcus
           elongatus BP-1]
 gi|22295485|dbj|BAC09311.1| ATP-dependent Clp protease proteolytic subunit 3
           [Thermosynechococcus elongatus BP-1]
          Length = 218

 Score =  196 bits (499), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 70/175 (40%), Positives = 109/175 (62%), Gaps = 9/175 (5%)

Query: 41  KERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS---------PGGVVTAGMA 91
           KERIV++   +   +  LI A+LL+L+ ++P+K I +YINS         P G  T   A
Sbjct: 31  KERIVYLGMPLVPAVTELIIAELLYLQYDDPEKPIRIYINSTGTSRYDGEPVGFETEAFA 90

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           I DTM++IKPP+ T C+GQA  M ++LLSAG KG R +LP+A I+LHQ      GQA+DI
Sbjct: 91  ICDTMRYIKPPVHTICIGQAMGMAAMLLSAGTKGCRASLPHATIVLHQTKSYAQGQATDI 150

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           +  A++++  K  + EI  +N G+  E + + +DR   M+   A ++G++D++L 
Sbjct: 151 QIRAKEVLANKAMMVEILAQNTGQPPERITRDMDRLLYMTPQMAKEYGIIDRILE 205


>gi|309322359|ref|YP_003934209.1| ATP-dependent Clp protease proteolytic subunit [Cedrus deodara]
 gi|307683285|dbj|BAJ19593.1| ATP-dependent Clp protease proteolytic subunit [Cedrus deodara]
          Length = 196

 Score =  196 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 70/191 (36%), Positives = 114/191 (59%), Gaps = 3/191 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+RL +ER++F+   I   +A  +   +++L AE+  K++ 
Sbjct: 5   VPKVPFRAPGDEDANWVDLYNRLYRERLLFLAQDINHEIANQLMGLMVYLSAEDANKDMF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            ++N PGG V  G+ ++D MQ I P + T CMG AASMGS +L  GE   R ALP+ARI+
Sbjct: 65  SFLNCPGGSVIPGVGLFDVMQIIVPDVHTICMGVAASMGSFILIGGEITKRIALPHARIM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  + G A+D  + ++ +  ++  + + Y++  G   E +++ L+RD  MSA+EA
Sbjct: 125 IHQPASSYYDGPAADFHKESKHVTMLRDYITKCYIERTGNPGEIIQRDLNRDVFMSATEA 184

Query: 196 CDWGVVDKVLM 206
             +G+VD V  
Sbjct: 185 QAYGIVDAVAE 195


>gi|239939670|ref|ZP_04691607.1| putative ATP-dependent Clp protease [Streptomyces roseosporus NRRL
           15998]
 gi|239986153|ref|ZP_04706817.1| putative ATP-dependent Clp protease [Streptomyces roseosporus NRRL
           11379]
          Length = 201

 Score =  196 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 84/193 (43%), Positives = 126/193 (65%), Gaps = 2/193 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G R+ D YS+LL ERIVF+   I+D  A+ + AQL++LE  +P + +SL
Sbjct: 9   VLPEFTERTATGTRTQDPYSKLLSERIVFLGSPIDDTAASDLIAQLMYLEHADPDRPVSL 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG   A  A+YDTMQF+   + TFC+GQA S  + LL+AG KG R ALP AR+++
Sbjct: 69  YINSPGGSFQAMAAVYDTMQFLTCEVETFCLGQAGSYAAALLAAGAKGRRHALPGARVVI 128

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
            QP+      GQ SD+E HA+++V+ +     + V++ G+T E++   ++RD I+ A  A
Sbjct: 129 QQPALEEPMRGQPSDLEIHARELVRTREMFAAMLVRHTGRTAEQITADIERDTILDAKAA 188

Query: 196 CDWGVVDKVLMSR 208
              G+VD V+ +R
Sbjct: 189 LAHGLVDHVVENR 201


>gi|120434784|ref|YP_860470.1| ATP-dependent Clp protease proteolytic subunit [Gramella forsetii
           KT0803]
 gi|117576934|emb|CAL65403.1| ATP-dependent Clp protease proteolytic subunit [Gramella forsetii
           KT0803]
          Length = 186

 Score =  196 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 81/183 (44%), Positives = 123/183 (67%), Gaps = 1/183 (0%)

Query: 25  QTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG 84
           +   G+    I ++LL++R +++ G++ D  A  +  +L +L+ E    EI L+INSPGG
Sbjct: 5   KNKTGKIQDLIDNKLLEKRKIYMWGEVSDKTAKYVIDRLEYLDLE-GDGEIQLFINSPGG 63

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
            VT G AIYDT+  ++ P+ST C G AASMGS+LLSAG+KG RF  P+A++++HQPSGG 
Sbjct: 64  YVTDGFAIYDTIMSLESPVSTICTGLAASMGSILLSAGKKGRRFIQPHAKVMIHQPSGGA 123

Query: 145 SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            GQAS+IE  A +I+K K    EI  +NCG++ ++V K  +RD+ M A E+ ++G+VD +
Sbjct: 124 RGQASNIEIAANEILKTKHLSAEIIAENCGQSVDKVLKDFNRDYWMDAEESMEYGIVDGI 183

Query: 205 LMS 207
              
Sbjct: 184 FKK 186


>gi|317970580|ref|ZP_07971970.1| ATP-dependent Clp protease-like protein [Synechococcus sp. CB0205]
          Length = 225

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 79/192 (41%), Positives = 116/192 (60%), Gaps = 19/192 (9%)

Query: 41  KERIVFVT----------GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV----- 85
           KERIV++            Q+   +  LI AQLL+LE +NP+K I  YINS G       
Sbjct: 27  KERIVYLGLPLFSDDDAKRQMGIDVTELIIAQLLYLEFDNPEKPIFFYINSTGTSWYSGD 86

Query: 86  ----VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
                T   AI DT++++KPP+ T C+GQA    +++LSAG KG R ALP+A I+LHQP 
Sbjct: 87  AIGFETEAFAIADTIRYVKPPVHTICIGQAMGTAAMILSAGTKGHRAALPHASIVLHQPR 146

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            G  GQASDI+  A++++  KR + E+   N GK+ EE+ K  DR   ++A +A ++G++
Sbjct: 147 SGARGQASDIQIRAKEVLHNKRTMLEMLAANTGKSTEELSKASDRMTYLTAEQAVEFGLI 206

Query: 202 DKVLMSRIDIEE 213
           D+VL S+ D+  
Sbjct: 207 DRVLTSQKDLPS 218


>gi|77553345|gb|ABA96141.1| ATP-dependent Clp protease proteolytic subunit, putative, expressed
           [Oryza sativa Japonica Group]
          Length = 216

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 69/195 (35%), Positives = 109/195 (55%), Gaps = 3/195 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+ + +ER +F+  +I   +   I   +++L  E+   +I 
Sbjct: 5   VPKVPYRIPGDEEVTWVDLYNVMYRERTLFLGQEIRCEVTNHITGLMVYLSIEDGISDIF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG + +GMAI+DTMQ + P I T C+G AASM S +L  GE   R A P+ARI+
Sbjct: 65  LFINSPGGWLISGMAIFDTMQTVTPDIYTICLGIAASMVSFILLGGEPTKRIAFPHARIM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           LHQP S  +  +  +     +++ K+   +  +Y    GK +  V + ++RD  MSA +A
Sbjct: 125 LHQPASAYYRARTPEFLLEVEELHKVHEMITRVYALRTGKPFWVVSEDMERDVFMSADKA 184

Query: 196 CDWGVVDKVLMSRID 210
             +G+VD V    +D
Sbjct: 185 KAYGLVDIVGDEMLD 199


>gi|318040431|ref|ZP_07972387.1| ATP-dependent Clp protease-like protein [Synechococcus sp. CB0101]
          Length = 233

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 75/188 (39%), Positives = 114/188 (60%), Gaps = 19/188 (10%)

Query: 41  KERIVFVT----------GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV----- 85
           KERIV++            Q+   +  LI AQLL+LE +NP+K I  YINS G       
Sbjct: 27  KERIVYLGLPLFSDDDAKRQMGIDVTELIIAQLLYLEFDNPEKPIFFYINSTGTSWYSGD 86

Query: 86  ----VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
                T   AI DT++++KPP+ T C+GQA    +++LSAG KG R ALP+A I+LHQP 
Sbjct: 87  AIGFETEAFAIADTIRYVKPPVHTICIGQAMGTAAMILSAGTKGHRAALPHASIVLHQPR 146

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            G  GQASDI+  A++++  K+ + E+   N G++ E++ K  DR   ++A +A ++G++
Sbjct: 147 SGARGQASDIQIRAKEVLHNKQTMLEMLSANTGRSVEQLSKDSDRMTYLTAHQAVEYGLI 206

Query: 202 DKVLMSRI 209
           D+VL S+ 
Sbjct: 207 DRVLTSQK 214


>gi|47088548|gb|AAT10593.1| putative ATP-dependent Clp protease subunit [Oryza sativa Japonica
           Group]
          Length = 209

 Score =  195 bits (497), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 67/193 (34%), Positives = 108/193 (55%), Gaps = 2/193 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP  +   +      D+Y+ + +ER +F+  +I   +   I   +++L  E+   +I L+
Sbjct: 1   VPYRIPG-DEEATWVDLYNVMYRERTLFLGQEIRCEVTNHITGLMVYLSIEDGISDIFLF 59

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG + +GMAI+DTMQ + P I   C+G AASM S +L  GE   R A P+ARI+LH
Sbjct: 60  INSPGGWLISGMAIFDTMQTVTPDIYAICLGIAASMASFILLGGEPTKRIAFPHARIMLH 119

Query: 139 QP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP S  +  +  +     +++ K++  +  +Y    GK +  V + ++RD  MSA EA  
Sbjct: 120 QPASAYYRARTPEFLLEVEELHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEAKA 179

Query: 198 WGVVDKVLMSRID 210
           +G+VD V    +D
Sbjct: 180 YGLVDIVGDEMLD 192


>gi|166235773|gb|ABY85678.1| ATP-dependent protease proteolytic subunit [Silene sordida]
          Length = 196

 Score =  195 bits (497), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 72/189 (38%), Positives = 114/189 (60%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     D+Y+RL +ER++F+  +++  ++  +   +++L  E+  K++ 
Sbjct: 5   VPKVPFRSPGEEDASWVDVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYDTMQF++P + T CMG AASMGS +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGVAIYDTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  L  +YV+  GK    V         MSA+EA
Sbjct: 125 IHQPASSFYEAQTGEFILEAEELLKLRETLTRVYVQRTGKPIWVVSXXXXXXXXMSAAEA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGIVDLV 193


>gi|87302966|ref|ZP_01085770.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           WH 5701]
 gi|87282462|gb|EAQ74421.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
           WH 5701]
          Length = 224

 Score =  195 bits (497), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 77/191 (40%), Positives = 114/191 (59%), Gaps = 19/191 (9%)

Query: 41  KERIVFVT----------GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV----- 85
           KERIV++            Q+   +  LI AQLLFLE +NP+K I  YINS G       
Sbjct: 27  KERIVYLGLPLFSDDDAKRQMGIDVTQLIIAQLLFLEFDNPEKPIFFYINSTGTSWYSGD 86

Query: 86  ----VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
                T   AI DT++++KPP+ T C+GQA    +++LSAG KG R ALP+A I+LHQP 
Sbjct: 87  AIGFETEAFAICDTIRYVKPPVHTICIGQAMGTAAMILSAGAKGHRAALPHASIVLHQPR 146

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            G  GQASDI+  AQ+++  KR + E+   N G++ E++ K  DR   ++  EA ++G++
Sbjct: 147 SGARGQASDIQIRAQEVLHNKRVMLEMLSHNTGRSVEQLSKDSDRMTYLTPREALEYGLI 206

Query: 202 DKVLMSRIDIE 212
           D++L S+  + 
Sbjct: 207 DRILTSQKPLP 217


>gi|295065752|ref|YP_003587692.1| ATP-dependent Clp protease proteolytic subunit [Anomochloa
           marantoidea]
 gi|251765276|gb|ACT15430.1| ATP-dependent Clp protease proteolytic subunit [Anomochloa
           marantoidea]
          Length = 219

 Score =  195 bits (497), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 71/195 (36%), Positives = 109/195 (55%), Gaps = 3/195 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+ + +ER +F+  +I   +   I   +++L  E+   +I 
Sbjct: 5   VPKVPYRIPGDEDATWVDLYNVMYRERTLFLGQEIRAEITGHITGLMVYLSIEDGNSDIY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG + +GMAI+DTMQ + P I T C+G AASM S +L  GE   R A P+AR +
Sbjct: 65  LFINSPGGWLISGMAIFDTMQTVTPDIYTICIGIAASMASFILLGGEPACRIAFPHARNM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           LHQP S  +  +  +     +++ K+K  +  +Y    GK +  V + ++RD  MSA EA
Sbjct: 125 LHQPASAYYRARTREFFAEVEELHKVKDMITRVYALRTGKPFWVVSEDMERDVFMSADEA 184

Query: 196 CDWGVVDKVLMSRID 210
             +G+VD V    ID
Sbjct: 185 KAYGLVDAVGDEMID 199


>gi|222084109|ref|YP_002519561.1| ATP-dependent Clp protease proteolytic subunit [Keteleeria
           davidiana]
 gi|220983661|dbj|BAH11427.1| ATP-dependent Clp protease proteolytic subunit [Keteleeria
           davidiana]
          Length = 196

 Score =  195 bits (496), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 69/191 (36%), Positives = 115/191 (60%), Gaps = 3/191 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+RL +ER++F+   I   +A  +   +++L AE+  +++ 
Sbjct: 5   VPKVPFRAPGDEDANWVDLYNRLYRERLLFLAQDINHEIANQLMGLMVYLSAEDANQDMF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            ++N PGG V  G+ ++D MQ I P + T CMG AASMGS +L  GE   R ALP+AR++
Sbjct: 65  SFLNCPGGSVIPGVGLFDVMQIIVPDVHTICMGVAASMGSFILIGGEITKRIALPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  + G A+D  + +Q +  ++  + + Y++  G + E +++ L+RD  MSA+EA
Sbjct: 125 IHQPASSYYDGPAADFHKESQHVTMLRDYITKCYIERTGNSGEVIQRDLNRDVFMSATEA 184

Query: 196 CDWGVVDKVLM 206
             +G+VD V  
Sbjct: 185 QAYGIVDAVAE 195


>gi|254553625|gb|ACT67271.1| clp protease proteolytic subunit [Joinvillea plicata]
          Length = 218

 Score =  195 bits (496), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 68/195 (34%), Positives = 113/195 (57%), Gaps = 3/195 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+RL +ER +F+  ++   +   I   +++L  E+   ++ 
Sbjct: 5   VPKVPFRIPGDEEATWVDLYNRLYRERTLFLGQEVRCEITNNITGLMVYLSIEDGISDLF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG + +GMAI+DTM  + P + T C+G AASM S +L  GE   R A P+ARI+
Sbjct: 65  LFINSPGGWIMSGMAIFDTMSTVTPDVYTICIGIAASMASFILLGGEPTKRIAFPHARIM 124

Query: 137 LHQPSGGFSGQAS-DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           LHQP+  +    + +    A+++ K++  +  +YV   GK++  + + ++RD  MSA+EA
Sbjct: 125 LHQPASAYYRTRTGEFVLEAEELTKVREMITRVYVLRTGKSFWVISEDMERDVFMSATEA 184

Query: 196 CDWGVVDKVLMSRID 210
            D  +VD V    I+
Sbjct: 185 KDHRIVDIVGDEMIE 199


>gi|228016690|gb|ACP51518.1| ATP-dependent Clp protease proteolytic subunit [Pinus aristata]
          Length = 196

 Score =  195 bits (496), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 70/191 (36%), Positives = 111/191 (58%), Gaps = 3/191 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+RL +ER++F+   I   +A  +   +++L AE+  K+I 
Sbjct: 5   VPKVPFRAPGDEDATWVDLYNRLYRERLLFLAQDINHEIANQLMGLMVYLSAEDANKDIF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            ++N PGG V  G+ ++D MQ I P + T CMG AASMGS +L  GE   R ALP+AR++
Sbjct: 65  SFLNCPGGSVIPGVGLFDMMQVIVPNVHTICMGVAASMGSFILIGGEITKRMALPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  + G A++     + I  ++  + + Y++      E +++ LDRD  MSA+EA
Sbjct: 125 IHQPASSYYDGPAAEFHNEVKHITMLRNYITKCYIERTDNPEEVIQRDLDRDVFMSATEA 184

Query: 196 CDWGVVDKVLM 206
             +G+VD V  
Sbjct: 185 RAYGIVDTVAE 195


>gi|283455718|ref|YP_003360282.1| ATP-dependent Clp protease proteolytic subunit 1 [Bifidobacterium
           dentium Bd1]
 gi|283102352|gb|ADB09458.1| clp1 ATP-dependent Clp protease proteolytic subunit 1
           [Bifidobacterium dentium Bd1]
          Length = 171

 Score =  195 bits (496), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 82/170 (48%), Positives = 118/170 (69%), Gaps = 1/170 (0%)

Query: 47  VTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTF 106
           +  +++D MA  ICAQ+L L AE+P+K+I LYINSPGG +TAGMAIYDTMQ I+P ++T 
Sbjct: 1   MGEEVKDDMANRICAQMLMLAAEDPKKDIWLYINSPGGSITAGMAIYDTMQLIEPDVATV 60

Query: 107 CMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLN 166
            +G  ASMG  LLS+G KG RF   +AR+L+HQPSGG  G A+D+  +A+ I+ +K+ ++
Sbjct: 61  GLGMCASMGQFLLSSGTKGKRFLTSHARVLMHQPSGGIGGTATDVRINAELIMDMKKTMS 120

Query: 167 EIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           E+  +  G T EE+ +  + DH  +A EA ++G VDK L+S  D    +K
Sbjct: 121 ELTAEQTGHTVEEIYRDNEYDHWFTAQEALEYGFVDK-LVSTHDTMSATK 169


>gi|150397489|ref|YP_001327956.1| ATP-dependent Clp protease proteolytic subunit [Sinorhizobium
           medicae WSM419]
 gi|150029004|gb|ABR61121.1| Endopeptidase Clp [Sinorhizobium medicae WSM419]
          Length = 195

 Score =  195 bits (496), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 72/173 (41%), Positives = 109/173 (63%), Gaps = 1/173 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           L K R +F+ G I   +A  +C+QL+ L A +   +I +++NSPGG V +G +I+D ++F
Sbjct: 24  LFKSRSIFIYGNITQELAQKVCSQLVALAAASDD-DIRIFVNSPGGHVESGDSIHDMIKF 82

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           +KP + T   G  AS G+L+  A  K  R  LPN R LLHQPSGG  G ASDIE  A++I
Sbjct: 83  VKPKVWTIGTGWVASAGALIYVAAPKEQRLCLPNTRFLLHQPSGGTRGMASDIEIQAREI 142

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           +K+  RLN I+ +  G+  E++ K  DRD+ + A EA  +G+V +++ S  +I
Sbjct: 143 IKMNERLNRIFSEATGQPVEKIAKDTDRDYWLGAEEAKAYGLVSRIVTSIAEI 195


>gi|260366281|ref|ZP_05778737.1| endopeptidase Clp [Vibrio parahaemolyticus K5030]
 gi|308114048|gb|EFO51588.1| endopeptidase Clp [Vibrio parahaemolyticus K5030]
          Length = 127

 Score =  195 bits (496), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 71/125 (56%), Positives = 96/125 (76%)

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           G VTAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+ G  G R+ LPN+R+++HQP GG
Sbjct: 1   GSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAAGKRYVLPNSRVMIHQPLGG 60

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
           F GQASDI+ HAQ+I+ IK++LN +  ++ G+  E +E+  DRD+ MSA +A ++G+VD 
Sbjct: 61  FQGQASDIQIHAQEILTIKQKLNNLLAEHTGQPLEVIERDTDRDNFMSAEQAVEYGIVDA 120

Query: 204 VLMSR 208
           VL  R
Sbjct: 121 VLSHR 125


>gi|116328441|ref|YP_798161.1| protease subunit of an ATP-dependent Clp protease [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116331169|ref|YP_800887.1| protease subunit of an ATP-dependent Clp protease [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|116121185|gb|ABJ79228.1| Protease subunit of an ATP-dependent Clp protease [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116124858|gb|ABJ76129.1| Protease subunit of an ATP-dependent Clp protease [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 197

 Score =  195 bits (496), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 80/180 (44%), Positives = 121/180 (67%), Gaps = 7/180 (3%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I  + L  R +F+ G + D  +  +  +LL+LE ++P K I+ YINSPGGVVT+GM ++D
Sbjct: 19  ISKKFLDHRKIFLWGPVTDESSKDLVGKLLYLEMKDPGKPITFYINSPGGVVTSGMTVFD 78

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQ----ASD 150
           T++ I  P+ T CMG AASMGS+LL+AG KG R   PN ++++HQPS    GQ    A+D
Sbjct: 79  TIKMISSPVHTVCMGMAASMGSVLLAAGTKGERSIWPNGKVMIHQPS--IGGQIVAPATD 136

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           ++ HA++I+K K +LN+I    CG+   ++E+  DRD+ M A EA  +G+V+K L ++ID
Sbjct: 137 LKIHAEEILKTKAKLNQILADACGQPVSKIEEDTDRDYYMDAEEAIQYGIVNK-LATKID 195


>gi|322700293|gb|EFY92049.1| ATP-dependent Clp protease proteolytic subunit 1 [Metarhizium
           acridum CQMa 102]
          Length = 174

 Score =  195 bits (495), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 83/169 (49%), Positives = 115/169 (68%), Gaps = 7/169 (4%)

Query: 55  MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASM 114
           M+  I AQLL+LE++ P+K I++YINSPGG VT+GMAIYDTM +IK P+ST C+G AASM
Sbjct: 1   MSASIVAQLLWLESDTPEKPITMYINSPGGSVTSGMAIYDTMTYIKSPVSTVCVGGAASM 60

Query: 115 GSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCG 174
            ++LL+ GE G RFALP++ I++HQP GG  GQASDI  +A  I +I+ + N+I   +  
Sbjct: 61  AAILLAGGEAGKRFALPHSSIMIHQPLGGTRGQASDILIYANQIQRIREQSNKIMQYHLN 120

Query: 175 K-------TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           K       + EEV   ++RD  +S  EA D GV+D +L  R D +E  +
Sbjct: 121 KAKGTDKYSLEEVNDMMERDKYLSVDEALDLGVIDGILTKRTDKKEGEE 169


>gi|15966135|ref|NP_386488.1| ATP-dependent Clp protease proteolytic subunit [Sinorhizobium
           meliloti 1021]
 gi|307305688|ref|ZP_07585435.1| Endopeptidase Clp [Sinorhizobium meliloti BL225C]
 gi|307317691|ref|ZP_07597130.1| Endopeptidase Clp [Sinorhizobium meliloti AK83]
 gi|7387587|sp|Q9X7L1|CLPP3_RHIME RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
           AltName: Full=Endopeptidase Clp 3
 gi|4539549|emb|CAB39976.1| CLP protease proteolytic subunit [Sinorhizobium meliloti]
 gi|15075405|emb|CAC46961.1| CLP protease proteolytic subunit [Sinorhizobium meliloti 1021]
 gi|306896849|gb|EFN27596.1| Endopeptidase Clp [Sinorhizobium meliloti AK83]
 gi|306902391|gb|EFN32987.1| Endopeptidase Clp [Sinorhizobium meliloti BL225C]
          Length = 195

 Score =  195 bits (495), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 72/173 (41%), Positives = 109/173 (63%), Gaps = 1/173 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           L K R +F+ G I   +A  +C+QL+ L A +   +I L++NSPGG V +G +I+D ++F
Sbjct: 24  LFKSRSIFIYGTITQELAQKVCSQLVALAAASDD-DIRLFVNSPGGHVESGDSIHDMIKF 82

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           +KP + T   G  AS G+L+  A  K  R  LPN R LLHQPSGG  G ASDIE  A++I
Sbjct: 83  VKPKVWTIGTGWVASAGALIYVAAPKEQRLCLPNTRFLLHQPSGGTRGMASDIEIQAREI 142

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           +K+  RLN I+ +  G+  +++ K  DRD+ + A EA  +G+V +++ S  +I
Sbjct: 143 IKMNERLNRIFSEATGQPVDKIAKDTDRDYWLGAEEAKAYGLVSRIVTSIAEI 195


>gi|148241695|ref|YP_001226852.1| ATP-dependent Clp protease-like protein [Synechococcus sp. RCC307]
 gi|147850005|emb|CAK27499.1| Protease subunit of ATP-dependent Clp protease [Synechococcus sp.
           RCC307]
          Length = 224

 Score =  195 bits (495), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 76/191 (39%), Positives = 113/191 (59%), Gaps = 19/191 (9%)

Query: 41  KERIVFVT----------GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV----- 85
           KERIV++            Q+   +  LI AQLL+LE +NP K I  YINS G       
Sbjct: 31  KERIVYLGLPLFSDDDAKRQMGVDVTELIIAQLLYLEFDNPDKPIFFYINSTGTSWYSGD 90

Query: 86  ----VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
                T   AI DT++++KPP+ T C+GQA    +++LSAG KG R +LPNA I+LHQP 
Sbjct: 91  AIGFETEAFAICDTIRYVKPPVHTICIGQAMGTAAMILSAGAKGQRASLPNASIVLHQPR 150

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            G  GQA+DI+  AQ+++  KR +  +  +N G+T E++    DR   ++  +A D+G++
Sbjct: 151 SGARGQATDIQIRAQEVLHNKRTMLSMLSENTGRTVEQLTADSDRMTYLTPDQAMDYGLI 210

Query: 202 DKVLMSRIDIE 212
           D+VL SR ++ 
Sbjct: 211 DRVLSSRKELP 221


>gi|114799921|ref|YP_759272.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP
           [Hyphomonas neptunium ATCC 15444]
 gi|114740095|gb|ABI78220.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP
           [Hyphomonas neptunium ATCC 15444]
          Length = 200

 Score =  195 bits (495), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 74/188 (39%), Positives = 118/188 (62%), Gaps = 1/188 (0%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           E T     +  + S L K R + +TG I+   A ++C +LL L AE   + I + ++SPG
Sbjct: 13  ESTPANGPNTLVESALFKSRTILLTGGIDFKQARMVCERLLALSAE-SDEPILMILSSPG 71

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           G V +G  I+D ++F+  P+     G  AS G+L+ +A +K  R++LPN R LLH+P GG
Sbjct: 72  GHVESGDMIHDMIKFVTAPVKVLGSGWVASAGALIYAAAQKENRYSLPNTRYLLHEPRGG 131

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
             GQA+D+E  A++I+K++ RLN I+ +  GKT E+++K  +RD  M A EA D+G+V K
Sbjct: 132 VGGQATDVEIQAREIIKMRERLNRIFAEATGKTVEQIKKDTERDFWMGAQEAVDYGLVSK 191

Query: 204 VLMSRIDI 211
           ++ +R +I
Sbjct: 192 IIRNRREI 199


>gi|156084894|ref|XP_001609930.1| ATP-dependent Clp protease proteolytic subunit 1 [Babesia bovis
           T2Bo]
 gi|154797182|gb|EDO06362.1| ATP-dependent Clp protease proteolytic subunit 1, putative [Babesia
           bovis]
          Length = 225

 Score =  195 bits (495), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 79/198 (39%), Positives = 126/198 (63%), Gaps = 8/198 (4%)

Query: 20  PMVVEQTNRGERSYDIYSRLL--------KERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           P ++ Q N   + Y   S  L        + R +F++G++ D  +  +  Q+  +  ENP
Sbjct: 16  PKILIQANNDAKDYKSNSDYLAKVDEFHIRTRTLFLSGELNDEKSYRLINQIFRMNEENP 75

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            + I  YINSPGG V+AG+AIYD +Q +K  + T C+GQAASMG+ LL+AG KG+R A+P
Sbjct: 76  NENIKFYINSPGGSVSAGLAIYDILQSLKMRVETICIGQAASMGAFLLAAGAKGLRSAMP 135

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           N+RI++HQP GG  G+ +DI+  A +I+ I++ LN  +    GK+ E+VE+  +RD+ M 
Sbjct: 136 NSRIMIHQPLGGAHGEVTDIKIQANEILHIRQILNAHFSHFTGKSIEQVEQDCERDYYMR 195

Query: 192 ASEACDWGVVDKVLMSRI 209
            SEA ++G++D++  +R 
Sbjct: 196 PSEAMEYGLIDRICTTRT 213


>gi|224551502|gb|ACN54193.1| Clp-P protease subunit [Triticum aestivum]
          Length = 266

 Score =  195 bits (495), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 68/197 (34%), Positives = 120/197 (60%), Gaps = 4/197 (2%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
           SE+    L+P ++  T  G    D+ + LL  RI+F+   +   +A  + +QL+ L A +
Sbjct: 72  SENENPPLMPAIM--TPGGP--LDLATVLLGNRIIFIGQYVNSQVAQRVISQLVTLSAID 127

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
            + +I +Y+N PGG + + +AIYD M +I P + T C G  AS  +++L+ GEKGMR+A+
Sbjct: 128 EEGDILIYLNCPGGSLYSILAIYDCMSWISPKVGTVCFGVVASQAAIILAGGEKGMRYAM 187

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           PNAR+++HQP GG  G   ++ R   + +  + ++++++    G+  + V +  +RD  M
Sbjct: 188 PNARVMIHQPQGGSEGNTEEVRRQVGETIYARDKVDKMFASFTGRPIDIVRQWTERDRFM 247

Query: 191 SASEACDWGVVDKVLMS 207
           S+SEA D+G+VD +L +
Sbjct: 248 SSSEAMDFGLVDALLET 264


>gi|332180360|gb|AEE16048.1| ATP-dependent Clp protease proteolytic subunit [Treponema
           brennaborense DSM 12168]
          Length = 211

 Score =  194 bits (494), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 73/188 (38%), Positives = 116/188 (61%), Gaps = 1/188 (0%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           E++     S  + ++ LK R + ++G++   +A  I  QLL LEA+   + I ++I+SPG
Sbjct: 24  EKSANENASDALNAKFLKTRQILLSGEVNKPLAEKIVRQLLILEAD-SDEPIRIFIDSPG 82

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           G V AG AI+D ++F+  P+    MG  AS G+L+L A  K  R ALPN+  L+HQP  G
Sbjct: 83  GDVDAGYAIFDMIRFVNAPVYCIGMGLVASAGALILLAAPKERRIALPNSHYLIHQPLSG 142

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
             G A+DIE HA++I K + ++NE+     GK+ ++V K  DRD+ M+A EA  +G++  
Sbjct: 143 IKGVATDIEIHAREIEKTRAKINELISLETGKSLDQVCKDTDRDYWMNAEEARSYGLIST 202

Query: 204 VLMSRIDI 211
           V+ SR ++
Sbjct: 203 VVSSREEL 210


>gi|255030442|ref|ZP_05302393.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes LO28]
          Length = 146

 Score =  194 bits (494), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 89/146 (60%), Positives = 117/146 (80%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + L+P V+EQT+RGER+YDIYSRLLK+RI+ +   I+D++A  I +QLLFL+A++P+K+I
Sbjct: 1   MNLIPTVIEQTSRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            LYINSPGG ++AGMAIYDTM F+K  + T  MG AASMGS LL+AG  G RFALPNA I
Sbjct: 61  FLYINSPGGSISAGMAIYDTMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEI 120

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKI 161
           ++HQP GG  GQA++IE  A+ I+KI
Sbjct: 121 MIHQPLGGAQGQATEIEIAARHILKI 146


>gi|254409400|ref|ZP_05023181.1| Clp protease [Microcoleus chthonoplastes PCC 7420]
 gi|196183397|gb|EDX78380.1| Clp protease [Microcoleus chthonoplastes PCC 7420]
          Length = 223

 Score =  194 bits (493), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 74/176 (42%), Positives = 109/176 (61%), Gaps = 9/176 (5%)

Query: 41  KERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS---------PGGVVTAGMA 91
            ERIV++   +   +  LI A+LL+L+ +NP K I +YINS         P G  T   A
Sbjct: 36  NERIVYLGLPLVPQVTELIVAELLYLQYDNPDKPIKIYINSTGTSRYDGEPIGFETEAFA 95

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           I DTM +I+PPI T C+G A  M ++LLSAG KG R +LPNA I+LHQP     GQA+DI
Sbjct: 96  ICDTMNYIQPPIHTICIGSAMGMAAMLLSAGTKGCRASLPNASIVLHQPKSYARGQATDI 155

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           +  A++++  K  +  I  KN G++ E++ K ++R   M+  EA ++G++D+VL S
Sbjct: 156 QIRAKEVLANKITMMGILAKNTGQSAEKITKDMERMLYMTPYEAKEYGLIDRVLES 211


>gi|166235817|gb|ABY85720.1| ATP-dependent protease proteolytic subunit [Silene pseudoatocion]
          Length = 196

 Score =  194 bits (493), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 69/189 (36%), Positives = 113/189 (59%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  ++   E     D+Y+RL +ER++F+  +++  ++  +   +++L  E+  K++ 
Sbjct: 5   VPKVPFRSPGEEDAAWVDVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG V  G+AIYDTMQF++P + T CMG AASMGS +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGWVIPGVAIYDTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  +  Q  +    A++++K++  L  +YV+  GK    V + ++R        A
Sbjct: 125 IHQPASSFYEAQTGEFILEAEELLKLRETLTRVYVQRTGKPIWVVSEDMERXXXXXXXXA 184

Query: 196 CDWGVVDKV 204
              G+VD V
Sbjct: 185 QAHGIVDLV 193


>gi|196018963|ref|XP_002118901.1| hypothetical protein TRIADDRAFT_34921 [Trichoplax adhaerens]
 gi|190577803|gb|EDV18612.1| hypothetical protein TRIADDRAFT_34921 [Trichoplax adhaerens]
          Length = 139

 Score =  194 bits (493), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 95/139 (68%), Positives = 124/139 (89%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           +  +P+V+EQT + ER++DI+SRLLKERI+F++GQ+ED+MA++I AQLLFLE+ENP+K+I
Sbjct: 1   MSYIPVVIEQTPKSERAFDIFSRLLKERIIFLSGQVEDNMASVIIAQLLFLESENPEKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVV+AG+AIYDTMQ+IK  +ST C+GQA SMGS LL+AGEKG RFALPN+RI
Sbjct: 61  FMYINSPGGVVSAGLAIYDTMQYIKSDVSTLCVGQACSMGSFLLTAGEKGKRFALPNSRI 120

Query: 136 LLHQPSGGFSGQASDIERH 154
           ++HQP GGF GQA+DIE H
Sbjct: 121 MIHQPIGGFRGQATDIEIH 139


>gi|15640025|ref|NP_219478.1| ATP-dependent Clp protease proteolytic subunit [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189026264|ref|YP_001934036.1| ATP-dependent Clp protease proteolytic subunit [Treponema pallidum
           subsp. pallidum SS14]
 gi|3323371|gb|AAC26595.1| ATP-dependent Clp protease proteolytic component (clpP-2)
           [Treponema pallidum subsp. pallidum str. Nichols]
 gi|189018839|gb|ACD71457.1| ATP-dependent Clp protease proteolytic component [Treponema
           pallidum subsp. pallidum SS14]
          Length = 237

 Score =  194 bits (493), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 69/192 (35%), Positives = 116/192 (60%), Gaps = 1/192 (0%)

Query: 24  EQTNRGERSYDIY-SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSP 82
           E+    E    ++  + L+ R + ++G+I   +A  I  QL  LE+ +  K I +Y++SP
Sbjct: 46  EKRAHSESGESVFFQKFLETRQILLSGEISKDLAEGIVRQLFVLESLSVSKPIYMYVDSP 105

Query: 83  GGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSG 142
           GG V AG AI+D ++F+K P+ T  MG  AS G L+L A +K  RF L N+R L+HQP  
Sbjct: 106 GGDVDAGYAIFDVIRFVKTPVYTIGMGLVASAGVLVLLAAKKDCRFGLRNSRYLIHQPLS 165

Query: 143 GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
           G  G A+DIE HA+++ K + +LN +     G + ++V +  +RD+ + AS+A ++G++ 
Sbjct: 166 GMRGVATDIEIHARELEKTRSKLNALIASETGVSLDKVAQDTNRDYWLDASQALEYGLIS 225

Query: 203 KVLMSRIDIEEK 214
            ++  R D+ +K
Sbjct: 226 NLIEKRADLPKK 237


>gi|12336|emb|CAA38354.1| proteolytic subunit of ATP-dependent protease [Triticum aestivum]
          Length = 216

 Score =  193 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 71/195 (36%), Positives = 110/195 (56%), Gaps = 3/195 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +  R E     D+Y+ + +ER +F+  +I   +   I   +++L  E+   +I 
Sbjct: 5   VPKVPYRIPRDEEATWVDLYNVMYRERTLFLGQEIRCEITNHITGLMVYLSIEDGISDIF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG + +GMAI+DTMQ + P I T C+G AASM S +L  GE   R A P+ARI+
Sbjct: 65  LFINSPGGWLISGMAIFDTMQTVTPDIYTRCLGIAASMASFILLGGEPTKRIAFPHARIM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           LHQP S  +  +  +     +++ K++  +  +Y    GK +  V + ++RD  MSA EA
Sbjct: 125 LHQPASAYYRARTPESLLEVEELHKVREMITRVYAVRTGKPFWVVSEDMERDVFMSADEA 184

Query: 196 CDWGVVDKVLMSRID 210
             + +VD V    ID
Sbjct: 185 KAYELVDIVGDEMID 199


>gi|320012153|gb|ADW07003.1| Endopeptidase Clp [Streptomyces flavogriseus ATCC 33331]
          Length = 211

 Score =  193 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 78/194 (40%), Positives = 122/194 (62%), Gaps = 2/194 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G R+ D Y++LL ERIVF+   ++D  AT + AQ ++LE  +P + +SL
Sbjct: 9   VLPEFTERTAHGTRNTDPYAKLLSERIVFLGTPVDDTAATDLVAQFMYLEHADPDRPLSL 68

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG   A  AIYDTM F+   + TFC+GQA +  ++LL+AG  G R ALP AR+L+
Sbjct: 69  YINSPGGSFDAMTAIYDTMGFLACEVETFCLGQAGAAAAVLLAAGSPGRRHALPGARVLI 128

Query: 138 HQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
            QP+      GQ SD+E  A+++ + +  L  +  ++ G++ E +   ++RD I+ A  A
Sbjct: 129 QQPALDEPVQGQPSDLEIRARELTRERELLTSLLARHTGRSTERISADIERDTILDAEAA 188

Query: 196 CDWGVVDKVLMSRI 209
             +G+VD V+ +R 
Sbjct: 189 LAFGLVDHVMENRT 202


>gi|183221092|ref|YP_001839088.1| ATP-dependent Clp protease proteolytic subunit [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189911184|ref|YP_001962739.1| ATP-dependent Clp protease [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167775860|gb|ABZ94161.1| Protease subunit of an ATP-dependent Clp protease [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167779514|gb|ABZ97812.1| ATP-dependent Clp protease proteolytic subunit (ATP-dependent Clp
           protease proteolytic subunit) [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 202

 Score =  193 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 81/172 (47%), Positives = 120/172 (69%), Gaps = 2/172 (1%)

Query: 38  RLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97
           + L++R +F+ G + D  +  + A+L++LE  +P K I+ YINSPGGVVT+G+ +YDTMQ
Sbjct: 27  KFLEKRKIFLWGPVTDESSKELTAKLMYLEMVDPGKPITFYINSPGGVVTSGLVVYDTMQ 86

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS--GGFSGQASDIERHA 155
            I  P+ T CMG AASMGS+LL  G+KG R+  PN R+++HQPS  G     A+D+  HA
Sbjct: 87  MISSPVHTVCMGMAASMGSILLIGGKKGNRYIWPNGRVMIHQPSIGGQIQAPATDLLIHA 146

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           QDIVK K +LN++    CGK+YE++ +  DRD+ M A +A  +G+VDK++ +
Sbjct: 147 QDIVKTKEKLNQMLADACGKSYEQLVEDTDRDYYMDAEQALAYGIVDKIVNT 198


>gi|89890619|ref|ZP_01202129.1| ATP-dependent proteolytic subunit of ClpA-ClpP serine protease
           [Flavobacteria bacterium BBFL7]
 gi|89517534|gb|EAS20191.1| ATP-dependent proteolytic subunit of ClpA-ClpP serine protease
           [Flavobacteria bacterium BBFL7]
          Length = 180

 Score =  193 bits (491), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 80/171 (46%), Positives = 115/171 (67%), Gaps = 1/171 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I +  +++R +F+ G + D  A     +LL+L++ N + EI+  INSPGG VT+G +IYD
Sbjct: 11  IDNVHIEQRKIFIWGMVNDQTAKHCVDRLLYLDSLNHE-EITFVINSPGGYVTSGFSIYD 69

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TMQ IK P+ST C G AASMGSLLLS GEKG RF   + R+++HQPSGG  G ++DIE  
Sbjct: 70  TMQQIKSPVSTVCSGLAASMGSLLLSGGEKGRRFIQKHGRVMIHQPSGGARGTSADIEIT 129

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A +I+K K     I   NCG+T+E++ K  +RD+ + A EA  +G+VD ++
Sbjct: 130 AAEILKTKELSAHILADNCGQTFEKIMKDFNRDYWLGADEAVAYGIVDGIV 180


>gi|255081202|ref|XP_002507823.1| predicted protein [Micromonas sp. RCC299]
 gi|226523099|gb|ACO69081.1| predicted protein [Micromonas sp. RCC299]
          Length = 174

 Score =  193 bits (491), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 79/172 (45%), Positives = 115/172 (66%)

Query: 36  YSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDT 95
           Y++LL +R +F+ G+++D  A  +  ++LFL+A +P K I +YINS GGVVT+G+AIYD 
Sbjct: 2   YAQLLTQRRIFLNGRVDDKSAHTLVGKMLFLDAADPTKPIVMYINSGGGVVTSGLAIYDV 61

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           MQ ++PP+ T C+G A SM ++LL AGEKG R+ALPN+RI++HQP    SGQ +DI   A
Sbjct: 62  MQHVRPPVYTVCLGHAESMAAVLLCAGEKGHRYALPNSRIMIHQPHHVVSGQTTDIIIKA 121

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           +     +  L+ I   + GK   EV   L+RD  M+ASEA  +G+VD  +  
Sbjct: 122 KKAEHTRETLSAIIQAHSGKGEGEVNAALERDTYMTASEAKKFGIVDHTVTR 173


>gi|330038335|ref|XP_003239570.1| ATP-dependent Clp protease proteolytic subunit [Cryptomonas
           paramecium]
 gi|327206494|gb|AEA38672.1| ATP-dependent Clp protease proteolytic subunit [Cryptomonas
           paramecium]
          Length = 243

 Score =  193 bits (491), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 70/183 (38%), Positives = 107/183 (58%), Gaps = 9/183 (4%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV-------- 85
           D+ S LL  RIV++   +   +  LI A+ LFL+ EN +K + +Y+NS G          
Sbjct: 51  DLPSLLLHNRIVYLGMPLVPAVTELIVAEFLFLQYENSEKPLFMYLNSTGTSNPDGSSAG 110

Query: 86  -VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
             T   AI DTM +IKP + T C+GQA    ++LLS GE   R ALPNA I++HQP    
Sbjct: 111 FETEAFAIADTMNYIKPSVHTICVGQAFGTSAMLLSNGEVNCRSALPNATIMIHQPRSQA 170

Query: 145 SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            GQASDI   A++++  +++  EI  KN G++ +++ K   R   +S  EA ++G++DK+
Sbjct: 171 RGQASDIAIKAREVLYNRKQCFEIIAKNSGQSLQKIMKDASRTKYLSPQEAMEYGLIDKI 230

Query: 205 LMS 207
           L +
Sbjct: 231 LET 233


>gi|297846120|ref|XP_002890941.1| hypothetical protein ARALYDRAFT_890716 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297336783|gb|EFH67200.1| hypothetical protein ARALYDRAFT_890716 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 228

 Score =  193 bits (491), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 81/183 (44%), Positives = 122/183 (66%), Gaps = 1/183 (0%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           E   RG  S D+   LL+ERIVF+   I+D +A  I +QLL L+A++P+K+I L+INSPG
Sbjct: 6   ESAIRGAES-DVMGLLLRERIVFLGSSIDDFVADAIMSQLLLLDAKDPKKDIKLFINSPG 64

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           G ++A MAIYD +Q ++  +ST  +G  AS  S++L AG KG RFA+PN RI++HQP GG
Sbjct: 65  GSLSATMAIYDVVQLVRADVSTIALGIVASTASIILGAGTKGKRFAMPNTRIMIHQPLGG 124

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            S QA D+E  A++++  K  +  I      +++E+V K +DR+  MS  EA ++G++D 
Sbjct: 125 ASDQAIDVEIQAKEVMHNKNNVTSIIAGCTSRSFEQVLKDIDRNRYMSPIEAVEYGLIDG 184

Query: 204 VLM 206
           V+ 
Sbjct: 185 VID 187


>gi|254501110|ref|ZP_05113261.1| Clp protease [Labrenzia alexandrii DFL-11]
 gi|222437181|gb|EEE43860.1| Clp protease [Labrenzia alexandrii DFL-11]
          Length = 204

 Score =  193 bits (491), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 75/184 (40%), Positives = 112/184 (60%), Gaps = 1/184 (0%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           E  ++ + S  +   L + R V +TG +   MA  +CA+LL L A+     I++ ++SPG
Sbjct: 17  EDKSKAQPSIQVDKHLFEARTVLITGPVTQDMARDVCARLLAL-AQVSNDPITVIVSSPG 75

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           G V +G  I+D ++FI P +    MG  AS G+L+  +  K +RF  PN R LLHQPSGG
Sbjct: 76  GHVESGDMIHDAIKFISPEVRILGMGWVASAGALIYVSVPKELRFCTPNTRFLLHQPSGG 135

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
             G A+DIE  A++I+K++ RLN+I+    G+  E +EK  DRD+ MS  E  D+G+V K
Sbjct: 136 AGGMATDIEIQAKEIIKMRDRLNKIFADATGQPIERIEKDTDRDYWMSPEEGIDYGLVGK 195

Query: 204 VLMS 207
           V+ S
Sbjct: 196 VVTS 199


>gi|85544605|pdb|2F6I|A Chain A, Crystal Structure Of The Clpp Protease Catalytic Domain
           From Plasmodium Falciparum
 gi|85544606|pdb|2F6I|B Chain B, Crystal Structure Of The Clpp Protease Catalytic Domain
           From Plasmodium Falciparum
 gi|85544607|pdb|2F6I|C Chain C, Crystal Structure Of The Clpp Protease Catalytic Domain
           From Plasmodium Falciparum
 gi|85544608|pdb|2F6I|D Chain D, Crystal Structure Of The Clpp Protease Catalytic Domain
           From Plasmodium Falciparum
 gi|85544609|pdb|2F6I|E Chain E, Crystal Structure Of The Clpp Protease Catalytic Domain
           From Plasmodium Falciparum
 gi|85544610|pdb|2F6I|F Chain F, Crystal Structure Of The Clpp Protease Catalytic Domain
           From Plasmodium Falciparum
 gi|85544611|pdb|2F6I|G Chain G, Crystal Structure Of The Clpp Protease Catalytic Domain
           From Plasmodium Falciparum
          Length = 215

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 68/180 (37%), Positives = 109/180 (60%), Gaps = 1/180 (0%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           +   D+     K+RI+++T +I    A  + +QLL+L+  N   +I +YINSPGG +  G
Sbjct: 27  DMKKDVKLFFFKKRIIYLTDEINKKTADELISQLLYLDNINHN-DIKIYINSPGGSINEG 85

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
           +AI D   +IK  I T   G  ASM S++L++G+KG R +LPN RI++HQP G   G   
Sbjct: 86  LAILDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQ 145

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           DIE   ++I+ +K+ L         +T E +EK  DRD+ M+A EA  +G++D+V+ +++
Sbjct: 146 DIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDRDYYMNALEAKQYGIIDEVIETKL 205


>gi|124504813|ref|XP_001351149.1| ATP-dependent CLP protease, putative [Plasmodium falciparum 3D7]
 gi|4493909|emb|CAB39018.1| ATP-dependent CLP protease, putative [Plasmodium falciparum 3D7]
          Length = 370

 Score =  193 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 68/180 (37%), Positives = 109/180 (60%), Gaps = 1/180 (0%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           +   D+     K+RI+++T +I    A  + +QLL+L+  N   +I +YINSPGG +  G
Sbjct: 182 DMKKDVKLFFFKKRIIYLTDEINKKTADELISQLLYLDNINHN-DIKIYINSPGGSINEG 240

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
           +AI D   +IK  I T   G  ASM S++L++G+KG R +LPN RI++HQP G   G   
Sbjct: 241 LAILDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQ 300

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           DIE   ++I+ +K+ L         +T E +EK  DRD+ M+A EA  +G++D+V+ +++
Sbjct: 301 DIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDRDYYMNALEAKQYGIIDEVIETKL 360


>gi|329114091|ref|ZP_08242855.1| ATP-dependent Clp protease proteolytic subunit 2 [Acetobacter
           pomorum DM001]
 gi|326696630|gb|EGE48307.1| ATP-dependent Clp protease proteolytic subunit 2 [Acetobacter
           pomorum DM001]
          Length = 226

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 82/211 (38%), Positives = 123/211 (58%), Gaps = 3/211 (1%)

Query: 3   FEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQ 62
           F   A K  ++      P   E+   G    ++  +L K+R V + G I+D +A  +  +
Sbjct: 16  FPRNAIKMDDEPETPAAPEKAEEKTAGAPHGELEHKLFKQRKVLIFGGIDDKIARDVTGR 75

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASMGSLLLS 120
           LL L  E   + I +Y+NSPGG V +G  I+D ++F+    PI+    G  AS G+L+ +
Sbjct: 76  LLALAGE-SDQPIDVYVNSPGGHVESGDTIHDMIRFVDSIAPINMIGTGWVASAGALIFA 134

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG K  RF LPN R LLHQP GG  G A+DI+  A++I+K++ RLN I+ K  G +YE+V
Sbjct: 135 AGHKERRFCLPNTRFLLHQPMGGVRGPATDIDIEAREIIKMRERLNRIFAKETGHSYEKV 194

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
            K  DR++ MSA EA D+G+V K++    D+
Sbjct: 195 AKDTDRNYWMSAKEAIDYGLVTKIISKLSDL 225


>gi|156618928|ref|YP_001430063.1| ATP-dependent Clp protease proteolytic subunit [Cuscuta gronovii]
 gi|159106818|ref|YP_001531238.1| clp protease proteolytic subunit [Cuscuta obtusiflora]
 gi|160380549|sp|A7M922|CLPP_CUSGR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|156555966|emb|CAM98350.1| ATP-dependent Clp protease proteolytic subunit [Cuscuta gronovii]
 gi|158142542|gb|ABW20583.1| clp protease proteolytic subunit [Cuscuta obtusiflora]
          Length = 198

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 67/189 (35%), Positives = 110/189 (58%), Gaps = 3/189 (1%)

Query: 19  VPMV--VEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +   + G+   DIY+RL +ER +F+T  I   +   +    ++L  ++  K+I 
Sbjct: 5   VPRVRFLYDEDTGQVWIDIYNRLYRERCLFLTHTINTKIGNQLAGLFIYLGIQDDPKDIF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            ++NSPGG + +G+AIYD+MQ ++P   T C+G AASM   LL  G    R A P+AR++
Sbjct: 65  FFLNSPGGGIISGLAIYDSMQVVRPDTQTICVGLAASMACFLLVGGTITKRLAFPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  F  Q  D      +++K++  L E+Y +  GK +  + + ++RD  +S +EA
Sbjct: 125 MHQPLSTFFETQTGDAVMEVDELLKMRENLIEVYAQRTGKPHWVISEDIERDVFLSPTEA 184

Query: 196 CDWGVVDKV 204
             +G+VD V
Sbjct: 185 KTYGLVDVV 193


>gi|11467785|ref|NP_050836.1| ATP-dependent Clp protease proteolytic subunit [Nephroselmis
           olivacea]
 gi|18203460|sp|Q9TL09|CLPP_NEPOL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|5880714|gb|AAD54807.1|AF137379_30 proteolytic subunit 2 of clp protease [Nephroselmis olivacea]
          Length = 208

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 67/188 (35%), Positives = 118/188 (62%), Gaps = 2/188 (1%)

Query: 19  VPMVVEQTNR--GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +       +  D+Y+RL ++R++F+  ++ D ++  +C  +++L AE+P   + 
Sbjct: 5   VPKVPYRLPGESAPQWVDLYNRLYRQRLLFMGQELGDELSNQLCGIMIYLFAEDPSIPLF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VT+G+ ++D    +   ++T C+G AASM SL+LS G  G R ALP+AR++
Sbjct: 65  MYINSPGGSVTSGLGVFDIATVMMQDVTTICVGIAASMASLVLSGGSTGQRLALPHARMM 124

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG  GQASD+   + ++ +++  + + YV+   ++ E +   L+RD  MS  +A 
Sbjct: 125 IHQPEGGSRGQASDVMYESSEVERLRDIVVDCYVERTHQSRETIIIDLNRDLFMSPRQAR 184

Query: 197 DWGVVDKV 204
            +G++D V
Sbjct: 185 SYGLIDAV 192


>gi|303289849|ref|XP_003064212.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226454528|gb|EEH51834.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 215

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 77/205 (37%), Positives = 117/205 (57%), Gaps = 15/205 (7%)

Query: 19  VPMVVEQTNRG--ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ-KEI 75
           VP V  +T      +  DI++ L +ERIV++  QI+D +   + A +L+L+  +   K+I
Sbjct: 5   VPRVPYKTPNENSWQWVDIWNCLYRERIVWIGQQIDDELGNQLVATMLYLDTTDKSGKDI 64

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS------------LLLSAGE 123
            LYINS GG V   MAI DTM+ IK  +     G A +MG             +LL+ G 
Sbjct: 65  YLYINSEGGEVVPTMAILDTMKHIKSDVGCVGFGSARAMGGAFYLTLVPIRPRMLLACGA 124

Query: 124 KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
           KG R ALPN  I+LH PSG   G ASDI    ++++KI+ ++N++     G+   E+++ 
Sbjct: 125 KGKRAALPNTCIMLHHPSGAARGAASDINNEGRELLKIRAKINDMIAGATGRPASEIQEN 184

Query: 184 LDRDHIMSASEACDWGVVDKVLMSR 208
           + RD  ++A +A D+GV+DKVL  R
Sbjct: 185 IRRDFHLTAEKALDYGVIDKVLYKR 209


>gi|227822887|ref|YP_002826859.1| ATP-dependent Clp protease proteolytic subunit [Sinorhizobium
           fredii NGR234]
 gi|227341888|gb|ACP26106.1| ATP-dependent Clp protease proteolytic subunit 3 [Sinorhizobium
           fredii NGR234]
          Length = 197

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 71/173 (41%), Positives = 110/173 (63%), Gaps = 1/173 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           L K R +F+ G I   +A  +C+QL+ L +    ++I +++NSPGG V +G +I+D ++F
Sbjct: 26  LFKSRSIFIYGTITQELAQKVCSQLVALAS-ASDEDIRIFVNSPGGHVESGDSIHDMIKF 84

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           +KP + T   G  AS G+L+  A  K  R  LPN R LLHQPSGG  G ASDIE  A++I
Sbjct: 85  VKPKVRTIGTGWVASAGALIFVAPPKEQRLCLPNTRFLLHQPSGGTRGMASDIEIQAREI 144

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           +K+  RLN+I+ +  G+  E++ K  DRD+ + A EA  +G+V +++ S  +I
Sbjct: 145 IKMNERLNKIFSEATGQPVEKIAKDTDRDYWLGADEAKSYGLVSRIVTSVAEI 197


>gi|156085810|ref|XP_001610314.1| ATP-dependent Clp protease proteolytic subunit [Babesia bovis T2Bo]
 gi|154797567|gb|EDO06746.1| ATP-dependent Clp protease proteolytic subunit, putative [Babesia
           bovis]
          Length = 245

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 74/210 (35%), Positives = 135/210 (64%), Gaps = 4/210 (1%)

Query: 2   SFEGCAKKDSEDVFLGL--VPMVVEQTNRGERS--YDIYSRLLKERIVFVTGQIEDHMAT 57
            ++ C+   ++ +F+    VP+V  +    +RS  +DI++RL +ERI+FV+  +++    
Sbjct: 32  YYKPCSNYLTDKLFMTPLGVPLVEYKIPGTQRSEFHDIHTRLYRERILFVSQSLDESYTN 91

Query: 58  LICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSL 117
           +I   LL L++++ +K I+LYINS GG  TAG+ +YDT++ +K  I+T  +G  ++  SL
Sbjct: 92  MIIGTLLCLDSDSNEKPITLYINSQGGPSTAGITLYDTIKHLKSKIATINVGFCSATASL 151

Query: 118 LLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTY 177
           LL++G  GMR ALP++R+++HQP+G   G A  I   AQ ++ +KR L ++Y +   +  
Sbjct: 152 LLASGTPGMRSALPHSRVVMHQPAGTLEGSAEQIRSQAQYMLNMKRILQKLYSQVTNQPL 211

Query: 178 EEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           + + K L+R+  MSA E+  +G+VD+++ +
Sbjct: 212 DNIAKDLEREQFMSAEESLQYGLVDRIIRT 241


>gi|284052221|ref|ZP_06382431.1| ATP-dependent Clp protease-like protein [Arthrospira platensis str.
           Paraca]
          Length = 202

 Score =  192 bits (489), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 70/196 (35%), Positives = 112/196 (57%), Gaps = 20/196 (10%)

Query: 39  LLKERIVFVTG----------QIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV--- 85
           LLKERI+++            Q+   +  LI AQLL+L+  +P+K I  YINS G     
Sbjct: 2   LLKERIIYLGSPLVSSDDYKRQLGVDVTKLIIAQLLYLQFSDPEKPIFFYINSTGTSWYT 61

Query: 86  ------VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
                  T   AI DT+ ++KPP+ T C+GQA    +++LSAG KG R +LP+A I+L+Q
Sbjct: 62  GDAIGQDTEAFAICDTINYVKPPVHTICIGQAMGTAAMILSAGTKGCRTSLPHATIVLNQ 121

Query: 140 PS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           P  G    QA+DI+  A++++  K  +  I  KN G+  E++ K  DR   ++   A ++
Sbjct: 122 PRMGMGRSQATDIQIRAKEVLANKASILGILSKNTGQPVEKIAKDTDRMFYLTPEAAKEY 181

Query: 199 GVVDKVLMSRIDIEEK 214
           G++D+VL S  ++ ++
Sbjct: 182 GLIDRVLESTKELPKQ 197


>gi|258543192|ref|YP_003188625.1| ATP-dependent Clp protease proteolytic subunit [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256634270|dbj|BAI00246.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
           3283-01]
 gi|256637330|dbj|BAI03299.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640382|dbj|BAI06344.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643439|dbj|BAI09394.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646494|dbj|BAI12442.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649547|dbj|BAI15488.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652533|dbj|BAI18467.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655591|dbj|BAI21518.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
           3283-12]
          Length = 226

 Score =  192 bits (488), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 82/211 (38%), Positives = 123/211 (58%), Gaps = 3/211 (1%)

Query: 3   FEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQ 62
           F   A K  ++      P   E+   G    ++  +L K+R V + G I+D +A  +  +
Sbjct: 16  FPRNAIKMDDEPETPAAPEKAEEKTAGAPHGELEHKLFKQRKVLIFGGIDDKIARDVTGR 75

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASMGSLLLS 120
           LL L  E   + I +Y+NSPGG V +G  I+D ++F+    PI+    G  AS G+L+ +
Sbjct: 76  LLALAGE-SDQPIDVYVNSPGGHVESGDTIHDMIRFVDSIAPINMIGTGWVASAGALIFA 134

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG K  RF LPN R LLHQP GG  G A+DI+  A++I+K++ RLN I+ K  G +YE+V
Sbjct: 135 AGHKDRRFCLPNTRFLLHQPMGGVRGPATDIDIEAREIIKMRERLNRIFAKETGHSYEKV 194

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
            K  DR++ MSA EA D+G+V K++    D+
Sbjct: 195 AKDTDRNYWMSAKEAIDYGLVTKIISKLSDL 225


>gi|45657810|ref|YP_001896.1| ATP-dependent Clp protease-like, proteolytic subunit [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|161484953|ref|NP_712134.2| ATP-dependent protease ClpP [Leptospira interrogans serovar Lai
           str. 56601]
 gi|67460497|sp|Q72R01|CLPP2_LEPIC RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|45601050|gb|AAS70533.1| ATP-dependent CLP protease-like, proteolytic subunit [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|293385832|gb|AAN49152.2| ATP-dependent protease ClpP [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 197

 Score =  192 bits (488), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 81/180 (45%), Positives = 120/180 (66%), Gaps = 7/180 (3%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I    L  R +F+ G + D  +  +  +LL+LE ++P K+I+ YINSPGGVVT+GM ++D
Sbjct: 19  ISKNFLDHRKIFLWGPVTDESSKDLVGKLLYLEMKDPGKKITFYINSPGGVVTSGMTVFD 78

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQ----ASD 150
           T++ I  P+ T CMG AASMGS+LL+AG KG R   PN ++++HQPS    GQ    A+D
Sbjct: 79  TIKMISSPVHTVCMGMAASMGSVLLAAGTKGERSIWPNGKVMIHQPS--IGGQIVAPATD 136

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           ++ HA++I+K K +LN+I    CG    ++E+  DRD+ M A EA  +G+VDK L ++ID
Sbjct: 137 LKIHAEEILKTKTKLNQILADACGHPISKLEEDTDRDYYMDAEEAIKYGIVDK-LATKID 195


>gi|167999544|ref|XP_001752477.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162696377|gb|EDQ82716.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 232

 Score =  192 bits (488), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 81/174 (46%), Positives = 120/174 (68%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+   +LK+RIVF+  Q++D +A  I +QLL L+A +P+++I L+IN PGG ++A M I+
Sbjct: 16  DVMGLMLKQRIVFLGNQMDDFVADSIISQLLLLDAIDPKQDIRLFINCPGGSISAAMGIF 75

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D MQ  K  IST C G AAS  +LLL+AG KG R A+PN+RI++HQP GG SGQA D+E 
Sbjct: 76  DAMQLCKCDISTICFGFAASTAALLLAAGTKGKRLAMPNSRIMMHQPMGGASGQAIDVEI 135

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
            A++++  K  +  I  +  G++ E+VEK +DRD  MS  EA ++G++D V+  
Sbjct: 136 QAKEVMYHKSNVIRILSEITGRSIEQVEKDIDRDRYMSPIEAMEYGMIDGVIDK 189


>gi|18202219|sp|O84003|CLPP2_TREPA RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
          Length = 199

 Score =  192 bits (488), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 69/192 (35%), Positives = 116/192 (60%), Gaps = 1/192 (0%)

Query: 24  EQTNRGERSYDIY-SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSP 82
           E+    E    ++  + L+ R + ++G+I   +A  I  QL  LE+ +  K I +Y++SP
Sbjct: 8   EKRAHSESGESVFFQKFLETRQILLSGEISKDLAEGIVRQLFVLESLSVSKPIYMYVDSP 67

Query: 83  GGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSG 142
           GG V AG AI+D ++F+K P+ T  MG  AS G L+L A +K  RF L N+R L+HQP  
Sbjct: 68  GGDVDAGYAIFDVIRFVKTPVYTIGMGLVASAGVLVLLAAKKDCRFGLRNSRYLIHQPLS 127

Query: 143 GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
           G  G A+DIE HA+++ K + +LN +     G + ++V +  +RD+ + AS+A ++G++ 
Sbjct: 128 GMRGVATDIEIHARELEKTRSKLNALIASETGVSLDKVAQDTNRDYWLDASQALEYGLIS 187

Query: 203 KVLMSRIDIEEK 214
            ++  R D+ +K
Sbjct: 188 NLIEKRADLPKK 199


>gi|118591096|ref|ZP_01548495.1| endopeptidase Clp, subunit 3 protein [Stappia aggregata IAM 12614]
 gi|118436172|gb|EAV42814.1| endopeptidase Clp, subunit 3 protein [Stappia aggregata IAM 12614]
          Length = 204

 Score =  192 bits (487), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 73/188 (38%), Positives = 112/188 (59%), Gaps = 1/188 (0%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           E   + + S  +   L + R V +TG +   MA  +CA+LL L A+     I++ ++SPG
Sbjct: 17  EDKPKSQPSIQVDKHLFEARTVLITGPVTQEMARDVCARLLAL-AQVSNDPITVIVSSPG 75

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           G V +G  I+DT++FI P +    MG  AS G+L+  +  K  RF  PN R LLHQPSGG
Sbjct: 76  GHVESGDMIHDTIKFIAPEVRILGMGWVASAGALIYVSVPKDKRFCTPNTRFLLHQPSGG 135

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
             G A+DIE  A++I+K++ RLN+I+    G+    +EK  DRD+ MS  E  D+G+V K
Sbjct: 136 AGGMATDIEIQAREIIKMRDRLNKIFADATGQPIARIEKDTDRDYWMSPEEGIDYGLVGK 195

Query: 204 VLMSRIDI 211
           ++ +  ++
Sbjct: 196 IVTTVDEL 203


>gi|209964755|ref|YP_002297670.1| ClpP protease, putative [Rhodospirillum centenum SW]
 gi|209958221|gb|ACI98857.1| ClpP protease, putative [Rhodospirillum centenum SW]
          Length = 211

 Score =  192 bits (487), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 69/178 (38%), Positives = 107/178 (60%), Gaps = 1/178 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I   L K R V + G+I   +A    AQLL   + +    I++ INSPGG V +G +I+D
Sbjct: 35  IQQALFKSRTVLIFGEINQKVAQDTVAQLLAYASISDD-PINIVINSPGGHVESGDSIHD 93

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           T++FIKP +     G  AS G+ +     +  R+ LPN R L+HQP GG  G+ASDI   
Sbjct: 94  TIRFIKPRVKILGTGWVASAGAHIFLGAHRENRYCLPNTRFLIHQPMGGAGGRASDIAIE 153

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
           AQ+I+K++RR+N I  +  G+  E VE+  DR++ MSA EA ++G+V  ++ ++ + +
Sbjct: 154 AQEIIKMRRRINSIIARETGQPLERVEQDTDRNYWMSAEEAKEYGLVTHIVATQAEFD 211


>gi|194476563|ref|YP_002048742.1| ATP-dependent Clp protease proteolytic subunit [Paulinella
           chromatophora]
 gi|171191570|gb|ACB42532.1| ATP-dependent Clp protease proteolytic subunit [Paulinella
           chromatophora]
          Length = 191

 Score =  192 bits (487), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 79/184 (42%), Positives = 125/184 (67%), Gaps = 1/184 (0%)

Query: 23  VEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSP 82
           +E      R+ D  S +  ERI+F+TG++ED+MA  + A LL+  A++ +  I LYINS 
Sbjct: 8   LEFPPGSGRAADPISAMSMERILFITGEVEDYMANQMVANLLYFNAQSVKDPIHLYINSD 67

Query: 83  GGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSG 142
           GG +++G+AIYDT+ +IK P++T C+G A+SM + LL+AG +G R AL ++RI++HQP G
Sbjct: 68  GGSISSGLAIYDTINYIKAPVTTTCLGSASSMAAFLLAAGSRGERRALKHSRIMIHQPIG 127

Query: 143 GFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
           G    QASD+   A ++   KR++NE   +  G+T +++EK  DRD+ +SA EA  +G++
Sbjct: 128 GIGRRQASDLLIEASEMAFTKRKMNECMAEMTGQTIDKIEKDTDRDYHLSAFEALRYGII 187

Query: 202 DKVL 205
           D V+
Sbjct: 188 DSVV 191


>gi|329942546|ref|ZP_08291356.1| clp protease family protein [Chlamydophila psittaci Cal10]
 gi|313847774|emb|CBY16764.1| putative protease proteolytic subunit [Chlamydophila psittaci RD1]
 gi|325507036|gb|ADZ18674.1| ATP-dependent Clp protease proteolytic subunit [Chlamydophila
           psittaci 6BC]
 gi|328815456|gb|EGF85444.1| clp protease family protein [Chlamydophila psittaci Cal10]
 gi|328914424|gb|AEB55257.1| Clp protease [Chlamydophila psittaci 6BC]
          Length = 192

 Score =  191 bits (486), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 74/179 (41%), Positives = 116/179 (64%), Gaps = 2/179 (1%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I  ++L  R VF +  + D  A     +L +LE  NP + I   INSPGG V AG A++D
Sbjct: 14  IERKILDARRVFFSEPVTDKSAAEAIKKLWYLELTNPGQPIVFVINSPGGSVDAGFAVWD 73

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS--GGFSGQASDIE 152
            ++ +  P++T   G AASMGS+L      G RFA P++RI++HQPS  G  +GQA+D++
Sbjct: 74  QIKMMTSPVTTVVTGLAASMGSVLSLCAAPGRRFATPHSRIMIHQPSIGGPITGQATDLD 133

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
            HA++I+K K+R+ ++Y++  G++ E +EK +DRD  M+A EA D+G++D +L S  D+
Sbjct: 134 IHAREILKTKKRIVDVYLEATGQSREVIEKAIDRDTWMTADEAKDFGLLDGILFSFNDL 192


>gi|330975104|gb|EGH75170.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. aptata str. DSM 50252]
          Length = 150

 Score =  191 bits (486), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 95/133 (71%), Positives = 114/133 (85%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           GLVPMV+EQ+ RGER+YDIYSRLLKER++F+ G +ED+MA LI AQLLFLEAENP K+I 
Sbjct: 18  GLVPMVIEQSARGERAYDIYSRLLKERVIFMVGPVEDYMANLIAAQLLFLEAENPDKDIH 77

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG VTAGM+IYDTMQFIKP +ST C+GQA SMG+ LL+ G +G R  LPN+R++
Sbjct: 78  LYINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAGGAEGKRHCLPNSRMM 137

Query: 137 LHQPSGGFSGQAS 149
           +HQP GGF GQAS
Sbjct: 138 IHQPLGGFQGQAS 150


>gi|297621676|ref|YP_003709813.1| ATP-dependent Clp protease proteolytic subunit [Waddlia
           chondrophila WSU 86-1044]
 gi|297376977|gb|ADI38807.1| ATP-dependent Clp protease proteolytic subunit [Waddlia
           chondrophila WSU 86-1044]
          Length = 196

 Score =  191 bits (486), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 71/171 (41%), Positives = 111/171 (64%), Gaps = 2/171 (1%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           +L+ R +F++ Q+++  A  I  +L +LE ++P K I   INSPGG V +G AI+D +Q 
Sbjct: 22  ILEARRLFLSNQVDNETANEIIRKLWYLELKDPGKPILFVINSPGGSVDSGFAIWDQVQM 81

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS--GGFSGQASDIERHAQ 156
           I  P++T   G AASMGS+L     KG R+  P ARI++HQP   G   GQA+D++  A+
Sbjct: 82  ISSPVTTLVTGLAASMGSVLSLCAAKGKRYVTPQARIMIHQPMIGGVIQGQATDLDIQAR 141

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           +I+K + +L  IY+   GK YE +++ +DRD  MSA EA ++G++D ++ S
Sbjct: 142 EILKTREKLVRIYMDATGKDYETIDRAIDRDTWMSAEEAKEFGLIDAIIDS 192


>gi|62184864|ref|YP_219649.1| ATP-dependent Clp protease proteolytic subunit [Chlamydophila
           abortus S26/3]
 gi|81312959|sp|Q5L6P3|CLPP1_CHLAB RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|62147931|emb|CAH63678.1| putative protease proteolytic subunit [Chlamydophila abortus S26/3]
          Length = 192

 Score =  191 bits (486), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 74/179 (41%), Positives = 116/179 (64%), Gaps = 2/179 (1%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I  ++L  R VF +  + D  A     +L +LE  NP + I   INSPGG V AG A++D
Sbjct: 14  IERKILDARRVFFSEPVTDKSAADAIKKLWYLELTNPGQPIVFVINSPGGSVDAGFAVWD 73

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS--GGFSGQASDIE 152
            ++ +  P++T   G AASMGS+L      G RFA P++RI++HQPS  G  +GQA+D++
Sbjct: 74  QIKMMTSPVTTVVTGLAASMGSVLSLCAAPGRRFATPHSRIMIHQPSIGGPITGQATDLD 133

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
            HA++I+K K+R+ ++Y++  G++ E +EK +DRD  M+A EA D+G++D +L S  D+
Sbjct: 134 IHAREILKTKKRIVDVYLEATGQSREVIEKAIDRDTWMTADEAKDFGLLDGILFSFNDL 192


>gi|291060402|gb|ADD73137.1| Clp protease [Treponema pallidum subsp. pallidum str. Chicago]
          Length = 201

 Score =  191 bits (485), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 67/179 (37%), Positives = 112/179 (62%)

Query: 36  YSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDT 95
           + + L+ R + ++G+I   +A  I  QL  LE+ +  K I +Y++SPGG V AG AI+D 
Sbjct: 23  FQKFLETRQILLSGEISKDLAEGIVRQLFVLESLSVSKPIYMYVDSPGGDVDAGYAIFDV 82

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           ++F+K P+ T  MG  AS G L+L A +K  RF L N+R L+HQP  G  G A+DIE HA
Sbjct: 83  IRFVKTPVYTIGMGLVASAGVLVLLAAKKDCRFGLRNSRYLIHQPLSGMRGVATDIEIHA 142

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           +++ K + +LN +     G + ++V +  +RD+ + AS+A ++G++  ++  R D+ +K
Sbjct: 143 RELEKTRSKLNALIASETGVSLDKVAQDTNRDYWLDASQALEYGLISNLIEKRADLPKK 201


>gi|222149377|ref|YP_002550334.1| ATP-dependent Clp protease proteolytic subunit [Agrobacterium vitis
           S4]
 gi|221736361|gb|ACM37324.1| ATP-dependent Clp protease proteolytic subunit ClpP [Agrobacterium
           vitis S4]
          Length = 193

 Score =  191 bits (485), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 75/173 (43%), Positives = 112/173 (64%), Gaps = 1/173 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           L K R +F+ G I   +A  +C QL+ L A +   +I +Y+NSPGG V +G +I+D ++F
Sbjct: 22  LFKSRSIFIYGGITQELAQKVCTQLVALAAASDD-DIRVYVNSPGGHVESGDSIHDMIKF 80

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           IKP +     G  AS G+L+  +  K  R  LPN R LLHQPSGG  G ASDIE  A++I
Sbjct: 81  IKPKVWIIGTGWVASAGALIYVSVPKEQRLCLPNTRFLLHQPSGGTRGMASDIEIQAREI 140

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           +K+ +RL +I+ K  G+T E++ K +DRD+ +SA EA  +G+V K++ S+ +I
Sbjct: 141 IKMNQRLIKIFSKATGQTEEKIAKDIDRDYWLSAEEAKTYGLVSKIVESQSEI 193


>gi|218176265|ref|YP_002364522.1| clp protease proteolytic subunit [Festuca arundinacea]
 gi|215882349|gb|ACJ70779.1| clp protease proteolytic subunit [Festuca arundinacea]
          Length = 214

 Score =  191 bits (485), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 71/195 (36%), Positives = 108/195 (55%), Gaps = 5/195 (2%)

Query: 19  VPMVVEQTNRGERS--YDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E +   D+Y+ + +ER   + GQ    +   I   +++L  E+   +I 
Sbjct: 5   VPKVPYRIPGDEEATGVDLYNVMYRERT--LFGQRRCEITNHITVLMVYLSIEDGISDIF 62

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG + +GMAI+DTMQ + P I T C+G AASM S +L  GE   R A P+ARI+
Sbjct: 63  LFINSPGGWLISGMAIFDTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIM 122

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           LHQP S  +     +     +++ K++  +  +Y    GK +  V + ++RD  MSA EA
Sbjct: 123 LHQPASAYYRAGTPEFLLEVEELHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEA 182

Query: 196 CDWGVVDKVLMSRID 210
             +G+VD V    ID
Sbjct: 183 KAYGLVDIVGDEMID 197


>gi|11467286|ref|NP_043143.1| ATP-dependent Clp protease proteolytic subunit [Cyanophora
           paradoxa]
 gi|11467404|ref|NP_043261.1| ATP-dependent Clp protease proteolytic subunit [Cyanophora
           paradoxa]
 gi|3023515|sp|Q36863|CLPP1_CYAPA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|1016087|gb|AAA81174.1| ClpP1 protease subnit [Cyanophora paradoxa]
 gi|1016205|gb|AAA81292.1| subunit of ClpP protease [Cyanophora paradoxa]
          Length = 194

 Score =  190 bits (484), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 65/171 (38%), Positives = 108/171 (63%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           S+LL+ RI+  +  ++D +   I  QLL+LE E+  K+I L+INSPGG VTAG+++YDT+
Sbjct: 22  SKLLQNRIILFSQTVDDEICNSIVGQLLYLENEDSTKDIRLFINSPGGSVTAGLSVYDTI 81

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQ 156
           Q +   +ST C G AASMG++LL+AG +  RFA  ++RI++HQP        S ++   +
Sbjct: 82  QNLSVDVSTICFGLAASMGAVLLAAGVENKRFAFASSRIMIHQPLSKVEAPWSHLDIQIR 141

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           +    K  LN I   +  +  +++E   +RD  +SA+EA  +G++D + ++
Sbjct: 142 NGAYFKNLLNNILSFHTKQELKQIETDTERDFFLSATEAKQYGIIDHIFIN 192


>gi|323454123|gb|EGB09993.1| hypothetical protein AURANDRAFT_58799 [Aureococcus anophagefferens]
          Length = 241

 Score =  190 bits (483), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 71/200 (35%), Positives = 116/200 (58%), Gaps = 3/200 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP     ++      DIY RL ++RI+ V   +++  A  + A LL+L  E+P+K IS+Y
Sbjct: 34  VPYQPPGSDSH-MFVDIYQRLYRDRIMLVGNFLDEEQANSLIAVLLYLRFEDPKKPISIY 92

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
            N PG ++   +A+YDT+Q ++ P++T  +G A  MG+ L  AG KG R+ALPNAR L+ 
Sbjct: 93  FNVPGALMKPCLAVYDTLQTLECPVTTVNLGLATGMGAFLCGAGTKGCRYALPNARFLMQ 152

Query: 139 QPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +      F GQASDI    ++ ++   R+ +  VK  G + + + + + RD  +SA EA 
Sbjct: 153 RTGLDDPFQGQASDIGLVVRENLRDNDRMEKALVKMTGNSIDVIHQDMKRDFYLSAHEAV 212

Query: 197 DWGVVDKVLMSRIDIEEKSK 216
            +G++DKVL+ +     + K
Sbjct: 213 QYGLIDKVLIPQPKNLGRDK 232


>gi|86605370|ref|YP_474133.1| ATP-dependent Clp protease-like protein [Synechococcus sp.
           JA-3-3Ab]
 gi|86553912|gb|ABC98870.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP
           [Synechococcus sp. JA-3-3Ab]
          Length = 210

 Score =  190 bits (483), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 77/186 (41%), Positives = 116/186 (62%), Gaps = 6/186 (3%)

Query: 34  DIYSRLLKERIVFVT----GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVV--T 87
           D+ S LL+ERIV++      +   ++  LI  QLL+L+ E+ +K I +YINS G     T
Sbjct: 19  DLASLLLQERIVYLGLPLAEEANANVTKLIVEQLLYLQYEDREKPIKMYINSTGTYSYDT 78

Query: 88  AGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQ 147
           A  AI DTM +IKPP+ T C+G A  M ++LL+AG KG R +LPNA I+LHQP GG  GQ
Sbjct: 79  AAFAILDTMNYIKPPVHTICIGNAIGMAAMLLAAGAKGFRASLPNATIVLHQPYGGTRGQ 138

Query: 148 ASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           ASDIE   ++I+ ++  + E   ++ G+  E ++K  +R   M+  EA  +G++D+VL S
Sbjct: 139 ASDIEIRTREILTLRNMMLEELSRSTGQPIERIKKDTERLFFMTPEEAKAYGLIDQVLTS 198

Query: 208 RIDIEE 213
              + +
Sbjct: 199 SKALPK 204


>gi|168033939|ref|XP_001769471.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679182|gb|EDQ65632.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 237

 Score =  190 bits (482), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 77/219 (35%), Positives = 119/219 (54%), Gaps = 12/219 (5%)

Query: 8   KKDSEDVFLGLVPMVVE---QTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLL 64
           K+       G+V MV+       R +   D+ S L K RIVF+   +      L  A+LL
Sbjct: 9   KRTQSCGRSGVVTMVIPFQRGDARQQPPPDLPSYLFKNRIVFLAMSLVPAFTELFMAELL 68

Query: 65  FLEAENPQKEISLYINSPG--------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
           +L+ ++P++ I +YINS G        G  T   AIYDTM+++KPPI T C+G A    +
Sbjct: 69  YLQYDDPEESIYMYINSTGTTKDGEKLGYETEAFAIYDTMRYMKPPIFTLCVGNAWGEAA 128

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
           LLL+AG KG R  LP+A I+L QP   F GQA+DI+   +++  +K    ++  ++ G+ 
Sbjct: 129 LLLAAGSKGNRACLPSATIMLKQPIAQFRGQATDIDIARKEVRNVKEEFVKLLSRHTGQP 188

Query: 177 YEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
            E++   + R        A D+G++DKVL    D E++S
Sbjct: 189 PEKITGDIRRPKYFKPDGAVDYGIIDKVLYVEGD-EKRS 226


>gi|29839992|ref|NP_829098.1| ATP-dependent Clp protease proteolytic subunit [Chlamydophila
           caviae GPIC]
 gi|33300944|sp|Q824C7|CLPP1_CHLCV RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|29834339|gb|AAP04976.1| ATP-dependent Clp protease, proteolytic subunit [Chlamydophila
           caviae GPIC]
          Length = 191

 Score =  190 bits (482), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 73/179 (40%), Positives = 115/179 (64%), Gaps = 2/179 (1%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I  ++L  R VF +  + D  A     +L +LE  +P + I   INSPGG V AG A++D
Sbjct: 13  IDKKILDARRVFFSEPVTDKSAADAIKKLWYLELSHPGQPIVFVINSPGGSVDAGFAVWD 72

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS--GGFSGQASDIE 152
            ++ +  P++T   G AASMGS+L      G RFA P++RI++HQPS  G  +GQA+D++
Sbjct: 73  QIKMMTSPVTTVVTGLAASMGSVLSLCAAPGRRFATPHSRIMIHQPSIGGPITGQATDLD 132

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
            HA++I+K K+R+ ++Y++  G+  E +EK +DRD  M+A EA D+G++D +L S  D+
Sbjct: 133 IHAREILKTKKRIVDVYLEATGQPREVIEKAIDRDMWMTADEAKDFGLLDGILFSFDDL 191


>gi|42527889|ref|NP_972987.1| ATP-dependent Clp protease proteolytic subunit [Treponema denticola
           ATCC 35405]
 gi|67460503|sp|Q73JM9|CLPP2_TREDE RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|41818934|gb|AAS12906.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Treponema
           denticola ATCC 35405]
 gi|325474892|gb|EGC78078.1| ATP-dependent Clp protease proteolytic subunit 2 [Treponema
           denticola F0402]
          Length = 200

 Score =  190 bits (482), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 69/191 (36%), Positives = 115/191 (60%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           E+ N+      +  + L  R + + G+I   ++  I  QLL +E+ +  K I +YI+SPG
Sbjct: 10  EKKNKTNDDDALMQKFLNTRQIILAGEINKELSEKIVRQLLLMESLSATKPIYIYIDSPG 69

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           G   AG AI+D ++FIK P+ T  MG  AS  S++L A  K  RF +PN+  L+HQP  G
Sbjct: 70  GDADAGFAIFDMIRFIKAPVYTIGMGLVASAASIILLAASKERRFGMPNSHYLIHQPLSG 129

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
             G A++IE HA+++ K++ ++N++  +  G   ++V K  DRD  ++A E+ ++G++ K
Sbjct: 130 IKGVATEIEIHAKELEKMRVKINKLIAEETGTDEKKVAKDTDRDCWLNAKESVEYGLISK 189

Query: 204 VLMSRIDIEEK 214
           +  +R DI EK
Sbjct: 190 IAKNRKDIPEK 200


>gi|209527270|ref|ZP_03275781.1| Endopeptidase Clp [Arthrospira maxima CS-328]
 gi|209492337|gb|EDZ92681.1| Endopeptidase Clp [Arthrospira maxima CS-328]
          Length = 230

 Score =  190 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 68/194 (35%), Positives = 111/194 (57%), Gaps = 20/194 (10%)

Query: 41  KERIVFVTG----------QIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV----- 85
           KERI+++            Q+   +  LI AQLL+L+  +P+K I  YINS G       
Sbjct: 32  KERIIYLGSPLVSSDDYKRQLGVDVTKLIIAQLLYLQFSDPEKPIYFYINSTGTSWYTGD 91

Query: 86  ----VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
                T   AI DTM ++KPP+ T C+GQA    +++LSAG KG R +LP+A I+L+QP 
Sbjct: 92  AIGQDTEAFAICDTMSYVKPPVHTICIGQAMGTAAMILSAGTKGCRTSLPHATIVLNQPR 151

Query: 142 -GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            G    QA+DI+  A++++  K  + +I  +N G+  E++ K  DR   ++   A ++G+
Sbjct: 152 MGMGRSQATDIQIRAKEVLANKASILDILSQNTGQPVEKIAKDTDRMFYLTPEAAKEYGL 211

Query: 201 VDKVLMSRIDIEEK 214
           +D+VL S  ++ ++
Sbjct: 212 IDRVLESTKELPKQ 225


>gi|89898588|ref|YP_515698.1| ATP-dependent Clp protease proteolytic subunit [Chlamydophila felis
           Fe/C-56]
 gi|116243111|sp|Q253I5|CLPP2_CHLFF RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|89331960|dbj|BAE81553.1| ATP-dependent Clp endopeptidase ATP-binding proteolytic subunit 1
           [Chlamydophila felis Fe/C-56]
          Length = 196

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 75/179 (41%), Positives = 115/179 (64%), Gaps = 2/179 (1%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I  ++L  R VF +  + D  A     +L +LE  NP + I   INSPGG V AG A++D
Sbjct: 18  IDRKILDTRRVFFSEPVTDKSAADAIKKLWYLELTNPGQPIVFVINSPGGSVDAGFAVWD 77

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS--GGFSGQASDIE 152
            ++ +  P++T   G AASMGS+L      G RFA P++RI++HQPS  G  +GQA+D++
Sbjct: 78  QIKMMTSPVTTVVTGLAASMGSVLSLCAAPGRRFATPHSRIMIHQPSIGGPITGQATDLD 137

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
            HA++I+K K+R+ ++YV+  G+  E +EK +DRD  M+A EA D+G++D +L S  D+
Sbjct: 138 IHAREILKTKKRIVDVYVEATGQPREVIEKAIDRDMWMTADEAKDFGLLDGILFSFNDL 196


>gi|146310154|ref|YP_001175228.1| ATP-dependent Clp protease proteolytic subunit [Enterobacter sp.
           638]
 gi|145317030|gb|ABP59177.1| Endopeptidase Clp [Enterobacter sp. 638]
          Length = 201

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 66/178 (37%), Positives = 110/178 (61%), Gaps = 1/178 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +  +LL+ R + ++G+I+  +A  +  Q++ L++ +    I LYINS GG V AG  I+D
Sbjct: 23  LQQKLLESRSIIISGEIDQALAEKVITQMILLQSVSND-PIKLYINSQGGHVEAGDTIHD 81

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            ++FI+P +     G  AS G  +  A +K  R+ALPN R ++HQP GG  GQA+DIE  
Sbjct: 82  FIKFIRPDVHVIGTGWVASAGITIFLAAKKEHRYALPNTRFMIHQPLGGVRGQATDIEIE 141

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
           A++I+++  R+N++     G+  E+V+K  DR+  MS  EA D+G+V K++    D++
Sbjct: 142 AREIIRMLERVNKLIADATGQPLEKVKKDTDRNFWMSPGEALDYGIVGKIITHYDDLK 199


>gi|91202650|emb|CAJ72289.1| similar to ATP-dependent endopeptidase Clp [Candidatus Kuenenia
           stuttgartiensis]
          Length = 208

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 72/179 (40%), Positives = 113/179 (63%), Gaps = 1/179 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+ +RLLK R + VT ++   MA  +  QLL LEA+   ++I ++INSPGG   AG A+Y
Sbjct: 30  DLIARLLKTRTIIVTDEVNKKMAERVITQLLLLEAD-NDEDIRVFINSPGGDADAGFAMY 88

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D ++F+KP I   C G  AS   ++L   +K  R++LP++RIL+HQPS G  G ASD++ 
Sbjct: 89  DMLRFVKPKIKAICSGVVASAAVIILLGAKKEDRYSLPSSRILIHQPSTGIHGTASDLQI 148

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
            A +I+K + ++N +     G+   +VE    R+  MSA EAC +G+V+K++ S  D++
Sbjct: 149 EATEILKCREKMNRMISVETGQPIGKVETDTKRNFWMSAEEACQYGLVNKIISSSDDLK 207


>gi|298208499|ref|YP_003716678.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Croceibacter
           atlanticus HTCC2559]
 gi|83848422|gb|EAP86291.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Croceibacter
           atlanticus HTCC2559]
          Length = 182

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 81/170 (47%), Positives = 120/170 (70%), Gaps = 1/170 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I S  L+ER VF+ GQ++D  A  +  +L++L++++ + EI  +INSPGG VTAG ++YD
Sbjct: 12  IDSNFLEERKVFLWGQVDDKSAKHVVDRLMYLDSQSNE-EIQFFINSPGGYVTAGFSMYD 70

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           T+  +K P+ST   G  ASMGS+LLSAG+KG RF  P+AR+++HQPSGG  GQAS+IE  
Sbjct: 71  TIMSLKSPVSTIASGLCASMGSILLSAGKKGRRFIQPHARVMIHQPSGGARGQASNIEIQ 130

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           AQ+I+K K    +I   NC + +++V K  +RD+ M A E+ D+G+VD +
Sbjct: 131 AQEIIKTKELSAKILADNCDQDFDKVMKDFNRDYWMDAQESIDYGIVDAI 180


>gi|162606046|ref|XP_001713538.1| ATP-dependent Clp protease proteolytic subunit [Guillardia theta]
 gi|13794458|gb|AAK39833.1|AF165818_41 ATP-dependent Clp protease proteolytic subunit [Guillardia theta]
          Length = 254

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 67/182 (36%), Positives = 108/182 (59%), Gaps = 9/182 (4%)

Query: 42  ERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV---------VTAGMAI 92
            RIV++   +   +  LI A+ L+L+ EN +K + +Y+NS G            T   AI
Sbjct: 67  NRIVYLGMPLVPAVTELIVAEFLYLQYENSEKPVYMYLNSTGTSNPDGSSAGFETEAFAI 126

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIE 152
            DTM +IKPP+ T C+GQA    ++LLS+GE G R ALPNA I++HQP+    GQASDI 
Sbjct: 127 ADTMNYIKPPVHTICVGQAFGTCAMLLSSGEPGQRAALPNATIMIHQPTSRARGQASDIA 186

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
             A++++  +++  EI  +  G++ E+V K   R   +S  EA ++G++D++L ++   +
Sbjct: 187 IKAREVLYNRKQCFEILAETSGQSLEKVMKDASRTKYLSPMEAVEYGIIDRILDTQKKSD 246

Query: 213 EK 214
            K
Sbjct: 247 GK 248


>gi|88800672|ref|ZP_01116232.1| ATP-dependent Clp protease proteolytic subunit [Reinekea sp.
           MED297]
 gi|88776633|gb|EAR07848.1| ATP-dependent Clp protease proteolytic subunit [Reinekea sp.
           MED297]
          Length = 185

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 78/185 (42%), Positives = 111/185 (60%), Gaps = 2/185 (1%)

Query: 28  RGERSYDIYS-RLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVV 86
           + E+S D  S RL   R V +  +I   MA  + AQLL L AE    +I L+INS GG V
Sbjct: 2   KDEKSQDPVSERLFSGRKVLICEEINQEMAKKVTAQLLAL-AEESDDDIVLFINSQGGHV 60

Query: 87  TAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG 146
            AG  I+D +QFI P +     G  AS G+ +  A +KG R+ LPN R L+HQPSGG  G
Sbjct: 61  EAGDTIHDIIQFIAPRVKVVGTGYVASAGTHIFLAADKGDRYCLPNTRFLIHQPSGGVGG 120

Query: 147 QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           QASDI   A+ I++++ RL  I  +  G+  + V K ++RD+ M+  EA ++G+VDKV+ 
Sbjct: 121 QASDIAIQAEQIIRMRERLARIISEQTGQPIDRVRKDIERDNWMTTDEAIEYGIVDKVVR 180

Query: 207 SRIDI 211
           S  ++
Sbjct: 181 SSSEV 185


>gi|255642366|gb|ACU21447.1| unknown [Glycine max]
          Length = 175

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 92/144 (63%), Positives = 119/144 (82%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            L+PMV+E ++RGER+YDI+SRLLKERI+ + G I D  A ++ AQ LFLE+ENP K I+
Sbjct: 26  SLIPMVIEHSSRGERAYDIFSRLLKERIICINGPISDDTAHVVVAQPLFLESENPSKPIN 85

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+NSPGG ++AG+AIYDTMQ+I+ P+ST CMGQAASMGSLLL+AG KG R +LPNA I+
Sbjct: 86  MYLNSPGGAISAGLAIYDTMQYIRSPVSTICMGQAASMGSLLLAAGAKGERRSLPNATIM 145

Query: 137 LHQPSGGFSGQASDIERHAQDIVK 160
           +HQPSGG+SGQA DI  H + IV+
Sbjct: 146 IHQPSGGYSGQAKDIAIHTKHIVR 169


>gi|302780906|ref|XP_002972227.1| hypothetical protein SELMODRAFT_148310 [Selaginella moellendorffii]
 gi|300159694|gb|EFJ26313.1| hypothetical protein SELMODRAFT_148310 [Selaginella moellendorffii]
          Length = 271

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 64/203 (31%), Positives = 114/203 (56%), Gaps = 5/203 (2%)

Query: 19  VPMVVEQTNRGERSY--DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            P V  +T         DI++ L +ERI+F+   I++     + A +L+L++ +  K++ 
Sbjct: 63  TPKVPYRTPGEGTWQFVDIWNVLYRERIIFIGQHIDEEFGNQVLATMLYLDSVDSSKDLH 122

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            Y++ PGG +T  MAIYDTM  +K  + T  +G A ++   LL+AGEKG+R ++P  RI 
Sbjct: 123 FYMSCPGGDLTPSMAIYDTMGSVKSRMGTMALGYAYNIAGFLLAAGEKGLRTSMPLTRIA 182

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +  P G   G+A+DI+  A+++ +++  L +      G+  E++ K   R    SA EA 
Sbjct: 183 MQPPQGAARGKAADIQNEAKELSRVRDYLFKQLAVKTGQPEEKIHKDFSRIKRFSAQEAL 242

Query: 197 DWGVVDKVL---MSRIDIEEKSK 216
           D+G++DK++     + D   K++
Sbjct: 243 DYGLIDKIIRPPTVKPDASSKAE 265


>gi|282896315|ref|ZP_06304337.1| hypothetical protein CRD_01199 [Raphidiopsis brookii D9]
 gi|281198811|gb|EFA73690.1| hypothetical protein CRD_01199 [Raphidiopsis brookii D9]
          Length = 187

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 66/181 (36%), Positives = 106/181 (58%), Gaps = 14/181 (7%)

Query: 41  KERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG--------------VV 86
           +ERI+F+   +  ++A  + + LL+L++E+  K I LYINS G                 
Sbjct: 3   QERILFLNQPLTTNLANSLISSLLYLDSEDSSKPIYLYINSFGDPVMAGMISEMAGMEST 62

Query: 87  TAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG 146
            A +AIYDT+Q +K  I T C+GQA SM +LLLS G KG R +LP+  I L Q      G
Sbjct: 63  NACLAIYDTIQHVKSEIVTICLGQAVSMAALLLSCGAKGKRVSLPHCSIALAQFRSATQG 122

Query: 147 QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           QA+DI+ +AQ++++ K  + +I+  N G++ E++    +R   M+  EA ++G++D VL 
Sbjct: 123 QATDIQLNAQEVLRKKSLILDIFSHNTGQSREKIAHDSERIFYMTPPEAREYGLIDHVLE 182

Query: 207 S 207
           +
Sbjct: 183 N 183


>gi|330444244|ref|YP_004377230.1| Clp protease [Chlamydophila pecorum E58]
 gi|328807354|gb|AEB41527.1| Clp protease [Chlamydophila pecorum E58]
          Length = 194

 Score =  189 bits (480), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 72/179 (40%), Positives = 113/179 (63%), Gaps = 2/179 (1%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +  ++L  R VF    + +  A     +L +LE  +P K I+  INSPGG V AG AI+D
Sbjct: 16  LEKQILSNRRVFFCEPVTEKSAADAIRKLWYLEMTDPGKPITFVINSPGGSVDAGFAIWD 75

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS--GGFSGQASDIE 152
            ++ +  P++T   G AASMGS+L      G RFA P++RI++HQPS  G  +GQA+D++
Sbjct: 76  QIKMLTSPVTTVVTGLAASMGSVLSLCAAPGRRFATPHSRIMIHQPSIGGPITGQATDLD 135

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
            HA++I+K K R+ ++YV+   +  + +EK +DRD  M+A EA D+G++D +L S  D+
Sbjct: 136 IHAREILKTKARIVDVYVEATHQPRDVIEKAIDRDMWMTADEAKDFGLLDGILFSFNDL 194


>gi|291569212|dbj|BAI91484.1| ATP-dependent Clp protease proteolytic subunit [Arthrospira
           platensis NIES-39]
          Length = 230

 Score =  189 bits (480), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 68/194 (35%), Positives = 110/194 (56%), Gaps = 20/194 (10%)

Query: 41  KERIVFVTG----------QIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV----- 85
           KERI+++            Q+   +  LI AQLL+L+  +P+K I  YINS G       
Sbjct: 32  KERIIYLGSPLVSSDEYKRQLGVDVTKLIIAQLLYLQFSDPEKPIFFYINSTGTSWYTGD 91

Query: 86  ----VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
                T   AI DT+ ++KPP+ T C+GQA    +++LSAG KG R +LP+A I+L+QP 
Sbjct: 92  AIGQDTEAFAICDTINYVKPPVHTICIGQAMGTAAMILSAGTKGCRTSLPHATIVLNQPR 151

Query: 142 -GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            G    QA+DI+  A++++  K  +  I  KN G+  E++ K  DR   ++   A ++G+
Sbjct: 152 MGMGRSQATDIQIRAKEVLANKASILGILSKNTGQPVEKIAKDTDRMFYLTPEAAKEYGL 211

Query: 201 VDKVLMSRIDIEEK 214
           +D+VL S  ++ ++
Sbjct: 212 IDRVLESTKELPKQ 225


>gi|148261149|ref|YP_001235276.1| ATP-dependent Clp protease proteolytic subunit [Acidiphilium
           cryptum JF-5]
 gi|326404550|ref|YP_004284632.1| ATP-dependent Clp protease proteolytic subunit [Acidiphilium
           multivorum AIU301]
 gi|146402830|gb|ABQ31357.1| ATP-dependent Clp protease proteolytic subunit ClpP [Acidiphilium
           cryptum JF-5]
 gi|325051412|dbj|BAJ81750.1| ATP-dependent Clp protease proteolytic subunit [Acidiphilium
           multivorum AIU301]
          Length = 216

 Score =  189 bits (480), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 80/214 (37%), Positives = 121/214 (56%), Gaps = 6/214 (2%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS     + D ED      P   E    G+   ++ +RL K+R V + G+I D +A  + 
Sbjct: 5   MSNRLAPRADDEDAPEKEAP---EAAKAGKVGPELENRLFKQRKVLIFGEIHDRIARAVT 61

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI--KPPISTFCMGQAASMGSLL 118
            QLL L A    + I +++NSPGG V +G  I+D ++F+    P+     G  AS G+L+
Sbjct: 62  GQLLAL-AGASDEPIDVFVNSPGGHVESGDTIHDVIRFVDATAPVRMIGTGWVASAGALI 120

Query: 119 LSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYE 178
             AG K  RF LPN R LLHQP GG  G A+DI+  A++I+K++ R+N I  +  G+ Y 
Sbjct: 121 YLAGHKDRRFCLPNTRFLLHQPMGGVRGPATDIDIEAREIIKMRERINRIIARETGQDYA 180

Query: 179 EVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
            VEK  DR++ M A EA  +G+V +V+ +  D++
Sbjct: 181 RVEKDTDRNYWMGAEEAIAYGMVSRVVQTMKDLD 214


>gi|86608098|ref|YP_476860.1| ATP-dependent Clp protease-like protein [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86556640|gb|ABD01597.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
           sp. JA-2-3B'a(2-13)]
          Length = 211

 Score =  189 bits (480), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 77/186 (41%), Positives = 116/186 (62%), Gaps = 6/186 (3%)

Query: 34  DIYSRLLKERIVFVT----GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVV--T 87
           D+ S LL+ERIV++      +   ++  LI  QLL+L+ E+ +K I +YINS G     T
Sbjct: 20  DLASLLLQERIVYLGLPLAEESNANVTKLIIEQLLYLQYEDREKPIKMYINSTGTYNYDT 79

Query: 88  AGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQ 147
           A  AI DTM +IKPP+ T C+G A  M ++LL+AG KG R +LPNA I+LHQP GG  GQ
Sbjct: 80  AAFAILDTMNYIKPPVHTICIGNAIGMAAMLLAAGAKGFRASLPNATIVLHQPYGGTRGQ 139

Query: 148 ASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           ASDIE   ++I+ ++  + E   ++ G+  E ++K  +R   M+  EA  +G++D+VL S
Sbjct: 140 ASDIEIRTREILTLRNMMLEQLSRSTGQPMERIKKDTERLFFMTPEEAKAYGLIDQVLTS 199

Query: 208 RIDIEE 213
              + +
Sbjct: 200 SKGVPK 205


>gi|227452690|gb|ACP34131.1| ATP-dependent protease subunit [Larix gmelinii]
          Length = 196

 Score =  189 bits (480), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 68/186 (36%), Positives = 111/186 (59%), Gaps = 3/186 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+Y+RL +ER++F+   I   +A  +   +++L AE+  K++ 
Sbjct: 5   VPKVPFRAPGDEDANWVDLYNRLYRERLLFLAQDINHEIANQLMGLMVYLSAEDANKDMF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            ++N PGG V  G+ I+D MQ I P + T CMG AASMGS +L  GE   R ALP+AR++
Sbjct: 65  SFLNCPGGSVIPGVGIFDVMQIIVPDVHTICMGVAASMGSFILIGGEITKRIALPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  + G A+D    ++ +  ++  + + Y++  G   E +++ L+RD  MSA+EA
Sbjct: 125 IHQPASTYYDGPAADFHNESKHVTMLRDYITKCYIERTGTPGEVIQRGLNRDVFMSATEA 184

Query: 196 CDWGVV 201
             +G+V
Sbjct: 185 QAYGIV 190


>gi|159185132|ref|NP_355226.2| ATP-dependent Clp protease proteolytic subunit [Agrobacterium
           tumefaciens str. C58]
 gi|159140403|gb|AAK88011.2| ATP-dependent Clp protease, proteolytic subunit [Agrobacterium
           tumefaciens str. C58]
          Length = 193

 Score =  189 bits (480), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 74/173 (42%), Positives = 113/173 (65%), Gaps = 1/173 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           L K R +F+ G I   +A  +C QL+ L A +   +I +Y+NSPGG V +G +I+D ++F
Sbjct: 22  LFKSRSIFIYGGITQELAQKVCTQLVALAAASDD-DIRVYVNSPGGHVESGDSIHDMIKF 80

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           IKP +     G  AS G+L+  +  K  R  LPN R LLHQPSGG  G ASDIE  A++I
Sbjct: 81  IKPKVYIIGTGWVASAGALIYVSVPKERRLCLPNTRFLLHQPSGGTRGMASDIEIQAREI 140

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           +K+ +RL +I+ K  G+T E++ K +DRD+ +SA +A D+G+V K++ S+ ++
Sbjct: 141 IKMNQRLIKIFSKATGQTEEKIAKDIDRDYWLSADDAKDYGLVGKIVESQSEL 193


>gi|67460572|sp|Q8UD57|CLPP3_AGRT5 RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
           AltName: Full=Endopeptidase Clp 3
          Length = 201

 Score =  188 bits (479), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 74/173 (42%), Positives = 113/173 (65%), Gaps = 1/173 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           L K R +F+ G I   +A  +C QL+ L A +   +I +Y+NSPGG V +G +I+D ++F
Sbjct: 30  LFKSRSIFIYGGITQELAQKVCTQLVALAAASDD-DIRVYVNSPGGHVESGDSIHDMIKF 88

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           IKP +     G  AS G+L+  +  K  R  LPN R LLHQPSGG  G ASDIE  A++I
Sbjct: 89  IKPKVYIIGTGWVASAGALIYVSVPKERRLCLPNTRFLLHQPSGGTRGMASDIEIQAREI 148

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           +K+ +RL +I+ K  G+T E++ K +DRD+ +SA +A D+G+V K++ S+ ++
Sbjct: 149 IKMNQRLIKIFSKATGQTEEKIAKDIDRDYWLSADDAKDYGLVGKIVESQSEL 201


>gi|296101088|ref|YP_003611234.1| ATP-dependent Clp protease proteolytic subunit [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295055547|gb|ADF60285.1| ATP-dependent Clp protease proteolytic subunit [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 198

 Score =  188 bits (479), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 66/178 (37%), Positives = 110/178 (61%), Gaps = 1/178 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +  +LL+ R + ++G+I   +A  +  QL+ L++ +    I LYINS GG V AG  I+D
Sbjct: 20  LQQKLLESRSIVISGEINQALAEKVITQLILLQSVSND-PIKLYINSQGGHVEAGDTIHD 78

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            ++FI+P +     G  AS G  +  A +K  R++LPN R ++HQP GG  GQA+DIE  
Sbjct: 79  FIKFIRPDVHVIGTGWVASAGITIFLAAKKEHRYSLPNTRFMIHQPLGGVRGQATDIEIE 138

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
           A++I+++  R+N++     G+  E+V+K  DR+  MS +EA D+G+V K++    D++
Sbjct: 139 AREIIRMLDRVNKLIADATGQPLEKVKKDTDRNFWMSPAEALDYGIVGKLITHYDDLK 196


>gi|328543430|ref|YP_004303539.1| ATP-dependent Clp protease proteolytic subunit [Polymorphum gilvum
           SL003B-26A1]
 gi|326413175|gb|ADZ70238.1| ATP-dependent Clp protease proteolytic subunit [Polymorphum gilvum
           SL003B-26A1]
          Length = 205

 Score =  188 bits (479), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 71/188 (37%), Positives = 112/188 (59%), Gaps = 1/188 (0%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           E+  +  +S  +   L   R V +TG I   +A  +C++LL L   +    I++ ++SPG
Sbjct: 18  EEKTKTPQSIQVDKHLFDARTVLITGPITQELARDVCSRLLALAQVSGD-PITVIVSSPG 76

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           G V +G  I+DT++FI+P +    MG  AS G+L+  +  K  RF  PN R LLHQPSGG
Sbjct: 77  GHVESGDMIHDTIKFIRPDVRILGMGWVASAGALIYVSVPKERRFCTPNTRFLLHQPSGG 136

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
             G A+DIE  A++I+K++ RLN+I+    G+  E +EK  DRD+ M   E  ++G+V K
Sbjct: 137 AGGMATDIEIQAREILKMRDRLNKIFADATGQPLERIEKDTDRDYWMGPDEGIEYGLVGK 196

Query: 204 VLMSRIDI 211
           V+ +  ++
Sbjct: 197 VVQTVDEL 204


>gi|298491709|ref|YP_003721886.1| endopeptidase Clp ['Nostoc azollae' 0708]
 gi|298233627|gb|ADI64763.1| Endopeptidase Clp ['Nostoc azollae' 0708]
          Length = 229

 Score =  188 bits (479), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 74/192 (38%), Positives = 113/192 (58%), Gaps = 19/192 (9%)

Query: 41  KERIVFVTG----------QIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV----- 85
           KERIV++            QI   +  LI AQLL+L+ +NP+K I  YINS G       
Sbjct: 32  KERIVYLGMPLVSADEYKRQIGVDVTKLIIAQLLYLKFDNPEKPIFFYINSTGTSWYTGD 91

Query: 86  ----VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
                T   AI DT+ +IK P+ T C+GQA    +L+LSAG KG R +LP+A I+L+QP 
Sbjct: 92  SIGYETEAFAICDTIDYIKTPVHTICIGQAIGTAALILSAGTKGFRASLPHATIVLNQPR 151

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            G  GQA+DI+ +A++++  K  + +I+ KN G+T  ++ K  +R   ++  EA ++G++
Sbjct: 152 SGTRGQATDIQIYAKEVLANKAAILDIFSKNTGQTPAKIAKDTERMFYLTPQEAKEYGLI 211

Query: 202 DKVLMSRIDIEE 213
           D VL S  D+ +
Sbjct: 212 DIVLASMKDLPK 223


>gi|145343664|ref|XP_001416434.1| chloroplast Clp protease, subunit of ClpP peptidase complex
           [Ostreococcus lucimarinus CCE9901]
 gi|144576659|gb|ABO94727.1| chloroplast Clp protease, subunit of ClpP peptidase complex
           [Ostreococcus lucimarinus CCE9901]
          Length = 251

 Score =  188 bits (478), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 72/185 (38%), Positives = 107/185 (57%), Gaps = 8/185 (4%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV---- 85
           +   D+ S + KERIV++   +   +  LI A+LL+L+ E+ +K I LYINS G      
Sbjct: 66  QSPPDLPSFIFKERIVYLGMTLVPSVTELILAELLYLQYEDKKKPIQLYINSTGSSKDGQ 125

Query: 86  ----VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
                T   AIYDT+Q++ PP+ T  +G A    ++LL+AG +G R ALP+A I+L QP 
Sbjct: 126 KYGYDTEAFAIYDTIQYVSPPVHTIAVGTAWGEAAMLLAAGSRGNRAALPSASIMLKQPL 185

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
             F GQAS++E   Q++   KR++ EI  K  GK    VE  ++R      +EA  +G++
Sbjct: 186 SAFRGQASELEIQRQEMRNTKRQMLEILAKTTGKDIATVESDINRPLYFDPTEAVKYGLI 245

Query: 202 DKVLM 206
           DKVL 
Sbjct: 246 DKVLS 250


>gi|325293629|ref|YP_004279493.1| ATP-dependent Clp protease proteolytic subunit [Agrobacterium sp.
           H13-3]
 gi|325061482|gb|ADY65173.1| ATP-dependent Clp protease proteolytic subunit [Agrobacterium sp.
           H13-3]
          Length = 201

 Score =  188 bits (478), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 72/173 (41%), Positives = 111/173 (64%), Gaps = 1/173 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           L K R +F+ G I   +A  +C QL+ L A +   +I +Y+NSPGG V +G +I+D ++F
Sbjct: 30  LFKSRSIFIYGGITQELAQKVCTQLVALAAASDD-DIRVYVNSPGGHVESGDSIHDMIKF 88

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           IKP +     G  AS G+L+  +  K  R  LPN R LLHQPSGG  G ASDIE  A++I
Sbjct: 89  IKPKVYIIGTGWVASAGALIYVSVPKERRLCLPNTRFLLHQPSGGTRGMASDIEIQAREI 148

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           +K+ +RL +I+ K  G++ E++ K +DRD+ + A EA  +G+V K++ S+ ++
Sbjct: 149 IKMNQRLIKIFAKATGQSEEKIAKDIDRDYWLGAEEAKGYGLVGKIVESQSEV 201


>gi|307946394|ref|ZP_07661729.1| Clp protease [Roseibium sp. TrichSKD4]
 gi|307770058|gb|EFO29284.1| Clp protease [Roseibium sp. TrichSKD4]
          Length = 210

 Score =  188 bits (478), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 70/186 (37%), Positives = 111/186 (59%), Gaps = 1/186 (0%)

Query: 26  TNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV 85
             +  +S  +   L + R V +TG I   +A  +C++LL L A+     I++ ++SPGG 
Sbjct: 25  KTKTPQSVPVDKHLFEARTVLITGPITQELARDVCSRLLAL-AQVSNDPITVIVSSPGGH 83

Query: 86  VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS 145
           V +G  I+DT++F+ P +    MG  AS G+L+  +  K  R+   N R LLHQPSGG  
Sbjct: 84  VESGDMIHDTIKFVSPEVRILGMGWVASAGALIYVSVPKEQRYCTQNTRFLLHQPSGGAG 143

Query: 146 GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           G A+DIE  A++I+K++ RLN+I+    G+  E +EK  DRD+ MS  E  ++G+V KV+
Sbjct: 144 GMATDIEIQAKEIIKMRDRLNQIFADATGQPIERIEKDTDRDYWMSPEEGIEYGLVGKVV 203

Query: 206 MSRIDI 211
            +  +I
Sbjct: 204 TNASEI 209


>gi|88770682|gb|ABD51944.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rhodomonas
           salina]
          Length = 262

 Score =  188 bits (478), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 65/176 (36%), Positives = 103/176 (58%), Gaps = 9/176 (5%)

Query: 41  KERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV---------VTAGMA 91
             RIV++   +   +  LI A+ L+L+ EN +K + +Y+NS G            T   A
Sbjct: 72  NNRIVYLGMPLVPAVTELIVAEFLYLQYENSEKPVFMYLNSTGTSNPDGSSAGFETEAFA 131

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           I DTM ++KPP+ T C+GQA     +LLS+GE   R ALPNA I++HQP+    GQASDI
Sbjct: 132 IADTMNYVKPPVHTICVGQAFGTCVMLLSSGEPTHRAALPNATIMIHQPTARAKGQASDI 191

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
              A++++  +++  EI  +  G+  E+V K   R   ++ +EA ++G++DK+L S
Sbjct: 192 AIKAREVLYNRKQCFEIIAETSGQPLEKVMKDASRTKYLTPAEAVEYGIIDKILES 247


>gi|330991950|ref|ZP_08315899.1| ATP-dependent Clp protease proteolytic subunit 2 [Gluconacetobacter
           sp. SXCC-1]
 gi|329760971|gb|EGG77466.1| ATP-dependent Clp protease proteolytic subunit 2 [Gluconacetobacter
           sp. SXCC-1]
          Length = 224

 Score =  188 bits (478), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 77/179 (43%), Positives = 112/179 (62%), Gaps = 3/179 (1%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           + SRL  +R V V G I D +A  +  +LL L A    K I +Y+NSPGG V +G  I+D
Sbjct: 46  LESRLFDQRKVLVFGPINDKIARDVTGRLLAL-AGASDKPIDVYVNSPGGHVESGDTIHD 104

Query: 95  TMQFIK--PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIE 152
            ++F+    PI+    G  AS G+L+ +AG K  RF LPN R LLHQP GG  G A+DI+
Sbjct: 105 MIRFVDSVAPINMIGTGWVASAGALIFAAGNKERRFCLPNTRFLLHQPMGGVRGPATDID 164

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
             A++IVK++ RLN ++ +  G+ YE+V K  DR++ MSA EA ++G+V +V+    D+
Sbjct: 165 IEAREIVKMRARLNHLFARETGQPYEKVCKDTDRNYWMSAPEAIEYGLVTRVIDKISDL 223


>gi|298713496|emb|CBJ27051.1| ATP-dependent Clp protease proteolytic subunit [Ectocarpus
           siliculosus]
          Length = 323

 Score =  188 bits (478), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 70/175 (40%), Positives = 105/175 (60%), Gaps = 9/175 (5%)

Query: 42  ERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVV---------TAGMAI 92
            RIV++   +   +  LI A+LL+L  E+  K + +YIN+PG            T   AI
Sbjct: 120 NRIVYLGMPLVPAVTELIIAELLYLNYESASKPVYMYINTPGTSTPDGRAIGFETEAFAI 179

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIE 152
            D M +IKPP+ T  +GQA  +G++LL++GEKG R ALPNA I+LHQP     GQASDI 
Sbjct: 180 SDCMNYIKPPVYTIGVGQAFGLGAMLLASGEKGHRSALPNASIMLHQPRSMARGQASDIA 239

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
             A++++  ++   ++  + CGK Y+EV +   R   MS  +A ++G++DKVL S
Sbjct: 240 IKAKEVMANRKTATQMLSEACGKPYDEVLEDSSRTFYMSPDDAVEYGLIDKVLRS 294


>gi|283050524|gb|ADB07674.1| ATP-dependent Clp protease proteolytic subunit [Hygroryza aristata]
          Length = 191

 Score =  188 bits (477), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 64/173 (36%), Positives = 101/173 (58%), Gaps = 1/173 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           + +ER +F+  +I   +   I   +++L  E+   +I L+INSPGG + +GMAI+DTMQ 
Sbjct: 2   MYRERTLFLGQEIRCEVTNHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAIFDTMQT 61

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIERHAQD 157
           + P I T C+G AASM S +L  GE   R A P+ARI+LHQP S  +  +  +     ++
Sbjct: 62  VTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFLLEVEE 121

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           + K++  +  +Y    GK +  V + ++RD  MSA EA  +G+VD V    +D
Sbjct: 122 LHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEAKAYGLVDIVGDEMVD 174


>gi|198433851|ref|XP_002124576.1| PREDICTED: similar to predicted protein isoform 2 [Ciona
           intestinalis]
          Length = 139

 Score =  188 bits (477), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 79/130 (60%), Positives = 104/130 (80%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YIN+PGG VT+G+AIYDTMQ IK P+ST+ +GQA+SMGSLLL+AGE GMR ALPN+RI+
Sbjct: 1   MYINTPGGTVTSGLAIYDTMQLIKCPVSTWVVGQASSMGSLLLAAGEPGMRNALPNSRIM 60

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP GG SGQASDI   A +I K+K +LN++YV++ G+ YE +EK LDRD+ M   EA 
Sbjct: 61  VHQPLGGASGQASDIVIQANEIKKVKEKLNKLYVQHTGQEYEVIEKALDRDNFMDPYEAK 120

Query: 197 DWGVVDKVLM 206
            +G++D VL 
Sbjct: 121 LFGLIDNVLE 130


>gi|302804775|ref|XP_002984139.1| hypothetical protein SELMODRAFT_271686 [Selaginella moellendorffii]
 gi|300147988|gb|EFJ14649.1| hypothetical protein SELMODRAFT_271686 [Selaginella moellendorffii]
          Length = 274

 Score =  188 bits (477), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 64/199 (32%), Positives = 110/199 (55%), Gaps = 2/199 (1%)

Query: 19  VPMVVEQTNRGERSY--DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            P V  +T         DI++ L +ERI+F+   I++     + A +L+L++ +  K++ 
Sbjct: 66  TPKVPYRTPGEGTWQFVDIWNVLYRERIIFIGQHIDEEFGNQVLATMLYLDSVDSSKDLH 125

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            Y++ PGG +T  MAIYDTM  +K  + T  +G A ++   LL+AGEKGMR ++P  RI 
Sbjct: 126 FYMSCPGGDLTPSMAIYDTMGSVKSRMGTMALGYAYNIAGFLLAAGEKGMRTSMPLTRIA 185

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +  P G   G+A+DI+  A+++ +++  L +      G   E++ K   R    SA EA 
Sbjct: 186 IQPPQGAARGKAADIQNEAKELSRVRDYLFKQLAVKTGHPEEKIHKDFSRIKRFSAQEAL 245

Query: 197 DWGVVDKVLMSRIDIEEKS 215
           D+G++DK++       + S
Sbjct: 246 DYGLIDKIIRPPTVKPDAS 264


>gi|297703255|ref|XP_002828563.1| PREDICTED: putative ATP-dependent Clp protease proteolytic subunit,
           mitochondrial-like, partial [Pongo abelii]
          Length = 301

 Score =  188 bits (477), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 82/220 (37%), Positives = 123/220 (55%), Gaps = 17/220 (7%)

Query: 5   GCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLL 64
             ++ ++    L L+P+VVEQT RGER+YDIYSRLL+ERIV V G I+D +A+L+ AQLL
Sbjct: 52  QRSQHETAARALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLL 111

Query: 65  FLEAENPQKEISLYINSPG----GVVTAGMAI------YDTMQFIKPPISTFCMGQAASM 114
           FL++E+ +K I +YINSPG      V   +        +  +  +K  I  F   Q  S+
Sbjct: 112 FLQSESNKKPIHMYINSPGEQGLSWVPGALVRAHGQKAFLVVARLKQDIGGFAQAQPTSL 171

Query: 115 GSLLLSAGEKGMRFALPNARILLHQPS-------GGFSGQASDIERHAQDIVKIKRRLNE 167
                S G        P    L   P+           GQA+DI   A++I+K+K++L  
Sbjct: 172 KPEAQSPGRAAECHLQPPCEGLTLMPTFTPSLPLDVPQGQATDIAIQAEEIMKLKKQLYN 231

Query: 168 IYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           IY K+  +T + +E  ++RD  MS  EA ++G++DKVL+ 
Sbjct: 232 IYAKHTKQTLQVIESAMERDRYMSPMEAQEFGILDKVLVH 271


>gi|295098456|emb|CBK87546.1| Protease subunit of ATP-dependent Clp proteases [Enterobacter
           cloacae subsp. cloacae NCTC 9394]
          Length = 200

 Score =  188 bits (477), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 65/177 (36%), Positives = 109/177 (61%), Gaps = 1/177 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +  +LL+ R + ++G+I   +A  +  Q++ L++ +    I LYINS GG V AG  I+D
Sbjct: 22  LQQKLLESRSIVISGEINQELAQKVITQMILLQSVSND-PIKLYINSQGGHVEAGDTIHD 80

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            ++FI+P +     G  AS G  +  A +K  R+ALPN R ++HQP GG  GQA+DIE  
Sbjct: 81  FIKFIRPEVHVIGTGWVASAGITIFLAAKKEHRYALPNTRFMIHQPLGGVRGQATDIEIE 140

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           A++I+++  R+N++     G+  E+V+K  DR+  MS +EA D+G+V K++    ++
Sbjct: 141 AREIIRMLERVNKLIADATGQPLEKVKKDTDRNFWMSPAEALDYGIVGKLITHYDEL 197


>gi|255071097|ref|XP_002507630.1| predicted protein [Micromonas sp. RCC299]
 gi|226522905|gb|ACO68888.1| predicted protein [Micromonas sp. RCC299]
          Length = 289

 Score =  187 bits (476), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 68/197 (34%), Positives = 111/197 (56%), Gaps = 9/197 (4%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
              ++P  ++     +   D+ S + KERIV++   +   +  LI A+LL+L+ E+  K 
Sbjct: 22  ISAVIPS-LQGDASTQAPPDLPSFIFKERIVYLGMTLVPSVTELILAELLYLQYEDKTKP 80

Query: 75  ISLYINSPGGV--------VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           I LYINS G           T   AIYDT++++  P+ T  +G A    ++LL++GEKG 
Sbjct: 81  IYLYINSTGTSKEGQKYGYDTEAFAIYDTIKYVNSPVHTVAVGTAWGEAAMLLASGEKGN 140

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           R ALP+A I++ QP   F GQA+D+E   +++   K++  E+  K   K  EE+EK ++R
Sbjct: 141 RAALPSASIMIKQPIDAFRGQATDLEIQRKEMRNTKKQTLELLSKGINKPIEELEKDINR 200

Query: 187 DHIMSASEACDWGVVDK 203
               +  EA D+G++DK
Sbjct: 201 PKYFNPWEAVDYGLIDK 217


>gi|160331817|ref|XP_001712615.1| clpP1 [Hemiselmis andersenii]
 gi|159766064|gb|ABW98290.1| clpP1 [Hemiselmis andersenii]
          Length = 257

 Score =  187 bits (476), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 66/179 (36%), Positives = 104/179 (58%), Gaps = 9/179 (5%)

Query: 42  ERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV---------VTAGMAI 92
            RIV++   +   +  LI A+ L+L+ EN  K + +Y+NS G            T   AI
Sbjct: 68  NRIVYLGMPLVPAVTELIVAEFLYLQYENADKPVFMYLNSTGTSNPDGSSAGFETEAFAI 127

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIE 152
            DTM +IKPP+ T C+GQA    ++LLS+GE G R ALPN+ I++HQP     GQASDI 
Sbjct: 128 ADTMNYIKPPVHTICVGQALGTCAMLLSSGEPGQRAALPNSTIMVHQPRTQAKGQASDIA 187

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
             A++++  +++  EI  K  G++ ++V K   R   ++  EA ++G++DK+L S   +
Sbjct: 188 IKAKEVLYNRKQCFEIIAKTSGQSLQKVMKDASRTKYLTPGEAVEYGIIDKILESNKSL 246


>gi|283050405|gb|ADB07585.1| ATP-dependent Clp protease proteolytic subunit [Oryza rufipogon]
 gi|283050409|gb|ADB07588.1| ATP-dependent Clp protease proteolytic subunit [Oryza glaberrima]
 gi|283050413|gb|ADB07591.1| ATP-dependent Clp protease proteolytic subunit [Oryza meridionalis]
 gi|283050425|gb|ADB07600.1| ATP-dependent Clp protease proteolytic subunit [Oryza officinalis]
 gi|283050429|gb|ADB07603.1| ATP-dependent Clp protease proteolytic subunit [Oryza punctata]
 gi|283050433|gb|ADB07606.1| ATP-dependent Clp protease proteolytic subunit [Oryza rhizomatis]
 gi|283050437|gb|ADB07609.1| ATP-dependent Clp protease proteolytic subunit [Oryza latifolia]
 gi|283050441|gb|ADB07612.1| ATP-dependent Clp protease proteolytic subunit [Oryza
           australiensis]
 gi|283050445|gb|ADB07615.1| ATP-dependent Clp protease proteolytic subunit [Oryza coarctata]
          Length = 191

 Score =  187 bits (476), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 64/173 (36%), Positives = 101/173 (58%), Gaps = 1/173 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           + +ER +F+  +I   +   I   +++L  E+   +I L+INSPGG + +GMAI+DTMQ 
Sbjct: 2   MYRERTLFLGQEIRCEVTNHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAIFDTMQT 61

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIERHAQD 157
           + P I T C+G AASM S +L  GE   R A P+ARI+LHQP S  +  +  +     ++
Sbjct: 62  VTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFLLEVEE 121

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           + K++  +  +Y    GK +  V + ++RD  MSA EA  +G+VD V    +D
Sbjct: 122 LHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEAKAYGLVDIVGDEMLD 174


>gi|156085800|ref|XP_001610309.1| ATP-dependent Clp protease proteolytic subunit  [Babesia bovis
           T2Bo]
 gi|154797562|gb|EDO06741.1| ATP-dependent Clp protease proteolytic subunit , putative [Babesia
           bovis]
          Length = 200

 Score =  187 bits (476), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 72/191 (37%), Positives = 126/191 (65%), Gaps = 2/191 (1%)

Query: 19  VPMVVEQTNRGERS--YDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP+V  +    +RS  +DI++RL +ERI+FV+  +++    +I   LL L++++ +K I+
Sbjct: 6   VPLVEYKIPGTQRSEFHDIHTRLYRERILFVSQSLDESYTNMIIGTLLCLDSDSNEKPIT 65

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINS GG  TAG+ +YDT++ +K  I+T  +G  ++  SLLL++G  GMR ALP++R++
Sbjct: 66  LYINSQGGPSTAGITLYDTIKHLKSKIATINVGFCSATASLLLASGTPGMRSALPHSRVV 125

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQP+G   G A  I   AQ ++ +KR L ++Y +   +  + + K L+R+  MSA E+ 
Sbjct: 126 MHQPAGTLEGSAEQIRSQAQYMLNMKRILQKLYSQVTNQPLDNIAKDLEREQFMSAEESL 185

Query: 197 DWGVVDKVLMS 207
            +G+VD+++ +
Sbjct: 186 QYGLVDRIIRT 196


>gi|259909252|ref|YP_002649608.1| ATP-dependent Clp protease proteolytic subunit [Erwinia pyrifoliae
           Ep1/96]
 gi|224964874|emb|CAX56396.1| Putative ATP-dependent Clp protease proteolytic subunit [Erwinia
           pyrifoliae Ep1/96]
 gi|283479304|emb|CAY75220.1| putative ATP-dependent Clp protease,proteolytic subunit ClpP2
           [Erwinia pyrifoliae DSM 12163]
          Length = 198

 Score =  187 bits (476), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 68/198 (34%), Positives = 116/198 (58%), Gaps = 2/198 (1%)

Query: 16  LGLVPMVVEQTNRGERSYDIY-SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
           +   P   E+  + E++  +  ++LL+ R V ++G+I   +A  + AQLL L+ E   + 
Sbjct: 1   MSEEPEKKEENGQEEKNSALAVNKLLQSRSVIISGEINQALAEKVTAQLLILQ-EMGDEP 59

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I L+INS GG V AG  I+D ++F+KP +     G  AS G  +  A +K  R+ LPN R
Sbjct: 60  IKLFINSQGGHVEAGDTIHDMIKFVKPKVLVIGTGWVASAGITIFLAADKENRYTLPNTR 119

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
            ++HQP GG  G+ SDIE  A+++++ + R+N++  K  G+  E+VEK  D ++ MS  +
Sbjct: 120 FMIHQPLGGVRGKVSDIEIEAKELLRARERINQLISKATGQPLEKVEKDTDSNYWMSPEQ 179

Query: 195 ACDWGVVDKVLMSRIDIE 212
           A D+G+   V+    +++
Sbjct: 180 AIDYGIATHVISHWNELK 197


>gi|83858741|ref|ZP_00952263.1| hypothetical protein OA2633_04541 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853564|gb|EAP91416.1| hypothetical protein OA2633_04541 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 206

 Score =  187 bits (476), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 73/174 (41%), Positives = 110/174 (63%), Gaps = 1/174 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           L + R + +TG I D  A  +CAQL  L A++    I + I+SPGG V +G  I+DTM+F
Sbjct: 33  LFESRTILITGGISDKTAREVCAQLFALAAKSDD-PILMVISSPGGHVESGDMIHDTMKF 91

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           IKP +     G  AS G+L+     K  R+ALPN R LLHQPSGG  G ASDIE   +++
Sbjct: 92  IKPRVIVLGSGWVASAGALIYVGANKEDRYALPNTRFLLHQPSGGAGGMASDIEIQVREM 151

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
             +++RLN+I+    GK+ +++EK  DRD  +SA +A ++G+  K++ S+ +I+
Sbjct: 152 RSMRQRLNQIFADATGKSLDQIEKDTDRDFWLSAKDAVEYGLCGKIITSQDEIK 205


>gi|166201954|gb|ABY84429.1| ATP-dependent protease proteolytic subunit [Lychnis flos-cuculi]
          Length = 375

 Score =  187 bits (476), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 60/174 (34%), Positives = 106/174 (60%), Gaps = 1/174 (0%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
             D+Y+RL +ER++F+  +I+   +  IC  +++L  E+  + + L+INSPGG + +G++
Sbjct: 197 WVDLYNRLYRERLLFLGQEIDTESSNNICGLMIYLSIEDASRNLHLFINSPGGGIISGVS 256

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           I+DTMQF+   + T C G A SM S +L  GE   R ALP++R+++HQP+  F    S +
Sbjct: 257 IFDTMQFVLAEVQTICFGLAGSMASFVLLGGELTKRLALPHSRVMMHQPASSFYKDKSRL 316

Query: 152 -ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
               +++++K + ++   Y +   +    + + L+RD  MS  EA D G+VD+V
Sbjct: 317 FSLDSRELLKFREKITLTYAQRTNQPEWVIWEDLERDSFMSPEEALDHGIVDRV 370


>gi|110589386|gb|ABG77202.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Endoriftia
           persephone 'Hot96_1+Hot96_2']
          Length = 150

 Score =  187 bits (476), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 69/144 (47%), Positives = 104/144 (72%), Gaps = 1/144 (0%)

Query: 66  LEAENPQKEISLYINSP-GGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           L++E   + +   I+ P GG VTAGM+IYDTMQFI+P +ST C+GQAASMG+LLL+ G  
Sbjct: 1   LKSEKSGQGMFTSISIPRGGPVTAGMSIYDTMQFIRPDVSTMCIGQAASMGALLLTGGAP 60

Query: 125 GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
           G R+ LPN+R+++HQP GG  GQASDIE HA++I+ ++ RLNEI   + G++ +++    
Sbjct: 61  GKRYCLPNSRMMIHQPLGGVQGQASDIEIHAKEILLLRERLNEILAHHTGQSLKQIAADT 120

Query: 185 DRDHIMSASEACDWGVVDKVLMSR 208
           +RD+ +   +A  +G++D+VL  R
Sbjct: 121 ERDNFLGGEDAVAYGLIDQVLAQR 144


>gi|283050509|gb|ADB07663.1| ATP-dependent Clp protease proteolytic subunit [Rhynchoryza
           subulata]
          Length = 191

 Score =  187 bits (475), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 65/173 (37%), Positives = 101/173 (58%), Gaps = 1/173 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           + +ER +F+  +I   +   I   +++L  E+   +I L+INSPGG + +GMAI+DTMQ 
Sbjct: 2   MYRERTLFLGQEIRCEVTNHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAIFDTMQT 61

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIERHAQD 157
           + P I T C+G AASM S +L  GE   R A P+ARI+LHQP S  +  +  +     ++
Sbjct: 62  VTPDIYTICLGIAASMASFILVGGEPTKRIAFPHARIMLHQPASAYYRARTPEFLLEVEE 121

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           + K++  +  +Y    GK +  V + ++RD  MSA EA  +G+VD V    ID
Sbjct: 122 LHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEAKAYGLVDIVGDEMID 174


>gi|283050453|gb|ADB07621.1| ATP-dependent Clp protease proteolytic subunit [Oryza ridleyi]
          Length = 191

 Score =  187 bits (475), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 63/167 (37%), Positives = 99/167 (59%), Gaps = 1/167 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           + +ER +F+  +I   +   I   +++L  E+   +I L+INSPGG + +GMAI+DTMQ 
Sbjct: 2   MYRERTLFLGQEIRCEVTNHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAIFDTMQT 61

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIERHAQD 157
           + P I T C+G AASM S +L  GE   R A P+ARI+LHQP S  +  +  +     ++
Sbjct: 62  VTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFLLEVEE 121

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           + K++  +  +Y    GK +  V + ++RD  MSA EA  +G+VD V
Sbjct: 122 LHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEAKAYGLVDIV 168


>gi|46446077|ref|YP_007442.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|67460481|sp|Q6ME32|CLPP1_PARUW RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|46399718|emb|CAF23167.1| probable ATP-dependent Clp protease proteolytic subunit [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 206

 Score =  187 bits (475), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 76/186 (40%), Positives = 117/186 (62%), Gaps = 2/186 (1%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           + +  I   +L  R +F++  ++   A+ I  +L +LE  +P K I   INSPGG V +G
Sbjct: 20  KMADRIEHAILDSRRIFISDAVDSGSASEIIRKLWYLELTDPGKPILFVINSPGGAVDSG 79

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP--SGGFSGQ 147
            AI+D ++ I  P++T   G AASMGS+L      G RFA P++RI++HQP  SG   GQ
Sbjct: 80  FAIWDQIKMITSPVTTLVTGLAASMGSILSLCASPGRRFATPHSRIMIHQPLLSGVIKGQ 139

Query: 148 ASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A+D+E  A++++K +  L EIYV+  GK +  +EK +DRD  M+A EA ++G++DKV+ S
Sbjct: 140 ATDLEIQAKEMLKTRNGLIEIYVQATGKNFAAIEKAIDRDTWMTAQEALEFGLLDKVINS 199

Query: 208 RIDIEE 213
             +IE 
Sbjct: 200 FEEIES 205


>gi|283050449|gb|ADB07618.1| ATP-dependent Clp protease proteolytic subunit [Oryza brachyantha]
 gi|283050457|gb|ADB07624.1| ATP-dependent Clp protease proteolytic subunit [Oryza granulata]
 gi|283050461|gb|ADB07627.1| ATP-dependent Clp protease proteolytic subunit [Oryza
           neocaledonica]
 gi|283050493|gb|ADB07651.1| ATP-dependent Clp protease proteolytic subunit [Chikusichloa
           aquatica]
 gi|283050497|gb|ADB07654.1| ATP-dependent Clp protease proteolytic subunit [Chikusichloa
           mutica]
          Length = 191

 Score =  187 bits (475), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 65/173 (37%), Positives = 101/173 (58%), Gaps = 1/173 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           + +ER +F+  +I   +   I   +++L  E+   +I L+INSPGG + +GMAI+DTMQ 
Sbjct: 2   MYRERTLFLGQEIRCEVTNHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAIFDTMQT 61

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIERHAQD 157
           + P I T C+G AASM S +L  GE   R A P+ARI+LHQP S  +  +  +     ++
Sbjct: 62  VTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFLLEVEE 121

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           + K++  +  +Y    GK +  V + ++RD  MSA EA  +G+VD V    ID
Sbjct: 122 LHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEAKAYGLVDIVGDEMID 174


>gi|303285882|ref|XP_003062231.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456642|gb|EEH53943.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 195

 Score =  187 bits (475), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 74/175 (42%), Positives = 115/175 (65%)

Query: 42  ERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP 101
           +R +F+ G+++D  A  +  ++LFL+A +P+  I LY+NS GGVVT+G+AIYD MQ ++P
Sbjct: 3   QRRIFLNGRVDDKSAHSLVGKMLFLDAVDPETPIVLYVNSGGGVVTSGLAIYDVMQHVRP 62

Query: 102 PISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKI 161
           P+ T C+G A SM ++LL AGEKG R+ LPNAR+++HQP    SGQ +DI   A      
Sbjct: 63  PVYTVCIGHAESMAAVLLCAGEKGHRYVLPNARVMVHQPHHVISGQTTDILIKATKAEHT 122

Query: 162 KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           +  L +I  K+ G++  EV   L+RD  M+A+EA  +G+ D+V+    ++   +K
Sbjct: 123 RTTLRDIIAKHSGRSAGEVIGVLERDTYMTAAEAVTFGLADEVITHIGELGVPTK 177


>gi|283050517|gb|ADB07669.1| ATP-dependent Clp protease proteolytic subunit [Luziola fluitans]
          Length = 191

 Score =  187 bits (475), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 64/173 (36%), Positives = 101/173 (58%), Gaps = 1/173 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           + +ER +F+  +I   +   I   +++L  E+   +I L+INSPGG + +GMAI+DTMQ 
Sbjct: 2   MYRERTLFLGQEIRCEVTNHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAIFDTMQT 61

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIERHAQD 157
           + P I T C+G AASM S +L  GE   R A P+AR++LHQP S  +  +  +     ++
Sbjct: 62  VTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARVMLHQPASAYYRARTPEFLLEVEE 121

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           + K++  +  +Y    GK +  V + ++RD  MSA EA  +G+VD V    ID
Sbjct: 122 LHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEAKAYGLVDIVGDEMID 174


>gi|71033841|ref|XP_766562.1| ATP-dependent Clp protease proteolytic subunit [Theileria parva
           strain Muguga]
 gi|68353519|gb|EAN34279.1| ATP-dependent Clp protease proteolytic subunit, putative [Theileria
           parva]
          Length = 181

 Score =  187 bits (475), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 68/171 (39%), Positives = 110/171 (64%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
            RL +ERI+FV+  ++D     + A +L L+ E  +K I+LYINSPGG + +G+++YDT+
Sbjct: 3   ERLFRERILFVSQPLDDEYVNQLIAAILCLDNETSEKPITLYINSPGGNMHSGLSLYDTL 62

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQ 156
           + ++  I T  +G  AS  +LLL AG  G R+ L ++R+LL QPSG   G A  I+  AQ
Sbjct: 63  KHVRSEIVTINVGLCASTATLLLGAGTPGKRYGLKHSRVLLLQPSGLAEGTAEQIKIEAQ 122

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
            I++IKR L EIY     + YE++   ++RD+ MS+ E   +G++D+++ +
Sbjct: 123 HILEIKRNLVEIYSNITKQPYEKIASDIERDNFMSSEEYKSYGLIDEIITN 173


>gi|296117414|ref|ZP_06836002.1| ATP-dependent Clp protease proteolytic subunit [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295976016|gb|EFG82806.1| ATP-dependent Clp protease proteolytic subunit [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 224

 Score =  187 bits (475), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 82/221 (37%), Positives = 126/221 (57%), Gaps = 11/221 (4%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMV----VEQTNRG----ERSYDIYSRLLKERIVFVTGQIE 52
           M  +   + D ED     +P       E+ +R         ++ SRL  +R V V G I 
Sbjct: 4   MQPKDRVRMDDEDPRDPDIPEPQGPETEEPDRNRTLSSPISELESRLFDQRKVLVFGPIN 63

Query: 53  DHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQ 110
           D +A  +  +LL L A    K I +Y+NSPGG V +G  I+D ++F+    PI+    G 
Sbjct: 64  DKIARDVTGRLLAL-AGASDKPIDVYVNSPGGHVESGDTIHDMIRFVDSVAPINMIGTGW 122

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYV 170
            AS G+L+ +AG +  R+ LPN R LLHQP GG  G A+DI+  A++I+K++ RLN ++ 
Sbjct: 123 VASAGALIYAAGNRERRYCLPNTRFLLHQPMGGVRGPATDIDIEAREIIKMRERLNRLFA 182

Query: 171 KNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           +  G++YE+V K  DR++ MSA EA ++G+V +V+    DI
Sbjct: 183 RETGQSYEKVCKDTDRNYWMSAPEAIEYGLVTRVIEKISDI 223


>gi|292487469|ref|YP_003530341.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP2
           [Erwinia amylovora CFBP1430]
 gi|292898711|ref|YP_003538080.1| ATP-dependent clp protease proteolytic subunit [Erwinia amylovora
           ATCC 49946]
 gi|291198559|emb|CBJ45667.1| ATP-dependent clp protease proteolytic subunit [Erwinia amylovora
           ATCC 49946]
 gi|291552888|emb|CBA19933.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP2
           [Erwinia amylovora CFBP1430]
 gi|312171574|emb|CBX79832.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP2
           [Erwinia amylovora ATCC BAA-2158]
          Length = 198

 Score =  187 bits (475), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 68/198 (34%), Positives = 116/198 (58%), Gaps = 2/198 (1%)

Query: 16  LGLVPMVVEQTNRGERSYDIY-SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
           +   P   E+  + E++  +  ++LL+ R V ++G+I   +A  + AQLL L+ E   + 
Sbjct: 1   MSEEPEKKEENGQEEKNSALAVNKLLQSRSVIISGEINQALAEKVTAQLLVLQ-EMGDEP 59

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I L+INS GG V AG  I+D ++F+KP +     G  AS G  +  A +K  R+ LPN R
Sbjct: 60  IKLFINSQGGHVEAGDTIHDMIKFVKPKVLVIGTGWVASAGITIFLAADKENRYTLPNTR 119

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
            ++HQP GG  G+ SDIE  A+++++ + R+N++  K  G+  E+VEK  D ++ MS  +
Sbjct: 120 FMIHQPLGGVRGKVSDIEIEAKELLRARERINQLISKATGQPLEKVEKDTDSNYWMSPEQ 179

Query: 195 ACDWGVVDKVLMSRIDIE 212
           A D+G+   V+    +++
Sbjct: 180 AIDYGIATHVISQWDELK 197


>gi|295840242|ref|ZP_06827175.1| Clp protease [Streptomyces sp. SPB74]
 gi|295827856|gb|EFG65658.1| Clp protease [Streptomyces sp. SPB74]
          Length = 217

 Score =  186 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 71/187 (37%), Positives = 119/187 (63%), Gaps = 2/187 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T+ G R+ D YSRLL+ RIVF+   ++D  A  + AQ L LE   P ++ISL
Sbjct: 29  VLPEFTERTSYGTRALDPYSRLLEGRIVFLGTPLDDTAAADLAAQFLHLEYAAPDQDISL 88

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N PGG  TA  A++ T++ +   ++T+C+GQA ++G++LL+AG  G R ALP ARI+L
Sbjct: 89  YLNCPGGDFTALTAVHYTLRHLSCDVATYCLGQAVAVGAVLLAAGTPGKRAALPGARIVL 148

Query: 138 HQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
            QP  +    G+ SD+   A ++ + +R    +     G+T +EV   ++R+ +++A+EA
Sbjct: 149 RQPELAEVTRGRPSDLAVLAGEMARERRTTERLLAAATGRTEDEVHGDMERERVLTAAEA 208

Query: 196 CDWGVVD 202
             +G++D
Sbjct: 209 VAYGIID 215


>gi|260766931|gb|ACX50407.1| ATP-dependent Clp protease [Eriobotrya japonica]
          Length = 305

 Score =  186 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 83/224 (37%), Positives = 126/224 (56%), Gaps = 17/224 (7%)

Query: 2   SFEGCAKKDSEDVFLGLVPMVV---EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATL 58
           SF G   K       G+V MV+     +   +   D+ S L K RIV++   +   +  L
Sbjct: 75  SFRGSEPKR------GVVTMVILFQRGSAWEQPPPDLASYLYKNRIVYLGMSLVPSVTEL 128

Query: 59  ICAQLLFLEAENPQKEISLYINSPG--------GVVTAGMAIYDTMQFIKPPISTFCMGQ 110
           I A+ L+L+ E+  K I LYINS G        G  T   AIYD M+++KPPI T C+G 
Sbjct: 129 ILAEFLYLQYEDDTKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMRYVKPPIFTLCVGN 188

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYV 170
           A    +LLL+AG KG R ALP++ I++ QP   F GQA+DIE   +++  +K  L +++ 
Sbjct: 189 AWGEAALLLAAGAKGNRSALPSSTIMMKQPIARFQGQATDIELARREVRNVKDELVKLFA 248

Query: 171 KNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           K+ GK+ E++E  + R    S SEA ++G++DKVL +    E++
Sbjct: 249 KHVGKSTEQIEADIRRPKYFSPSEAVEYGIIDKVLYNERSTEDR 292


>gi|84998026|ref|XP_953734.1| ATP-dependent Clp-like protease [Theileria annulata]
 gi|65304731|emb|CAI73056.1| ATP-dependent Clp-like protease, putative [Theileria annulata]
          Length = 215

 Score =  186 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 72/201 (35%), Positives = 118/201 (58%), Gaps = 12/201 (5%)

Query: 19  VPMVVEQTN--RGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           +P V  +          DI++RL +ERI+FV+  ++D     + A +L L+ E  +K I+
Sbjct: 7   IPKVSYKHPGSNQVEWEDIHNRLFRERILFVSQPLDDEYVNQLIAAILCLDNETSEKPIT 66

Query: 77  LYINSPGGVVTAGMAIYDTM----------QFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           LYINSPGG + AG+++YDT+          Q ++  I T  +G  AS  +LLL +G  G 
Sbjct: 67  LYINSPGGNMHAGLSLYDTLEVKTNKDKFNQHVRSEIVTINVGLCASTATLLLGSGTPGK 126

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           R+ L ++R+LL QPSG   G A  I+  AQ I++IK+ L EIY     + YE++   ++R
Sbjct: 127 RYGLQHSRVLLLQPSGLAEGTAEQIKIEAQHILEIKKNLIEIYSNITKQPYEKIASDIER 186

Query: 187 DHIMSASEACDWGVVDKVLMS 207
           D+ MS+ E   +G++D+++ +
Sbjct: 187 DNFMSSEEYKSYGLIDEIITN 207


>gi|310766844|gb|ADP11794.1| ATP-dependent clp protease proteolytic subunit [Erwinia sp. Ejp617]
          Length = 198

 Score =  186 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 68/198 (34%), Positives = 116/198 (58%), Gaps = 2/198 (1%)

Query: 16  LGLVPMVVEQTNRGERSYDIY-SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
           +   P   E+  + E++  +  ++LL+ R V ++G+I   +A  + AQLL L+ E   + 
Sbjct: 1   MSEEPEKKEENGQEEKNSALAVNKLLQSRSVIISGEINQALAEKVTAQLLILQ-EMGDEP 59

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I L+INS GG V AG  I+D ++F+KP +     G  AS G  +  A +K  R+ LPN R
Sbjct: 60  IKLFINSQGGHVEAGDTIHDMIKFVKPKVLVIGTGWVASAGITIFLAADKENRYTLPNTR 119

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
            ++HQP GG  G+ SDIE  A+++++ + R+N++  K  G+  E+VEK  D ++ MS  +
Sbjct: 120 FMIHQPLGGVRGKVSDIEIEAKELLRARERINQLISKATGQPLEKVEKDTDSNYWMSPEQ 179

Query: 195 ACDWGVVDKVLMSRIDIE 212
           A D+G+   V+    +++
Sbjct: 180 AIDYGIATHVISQWNELK 197


>gi|282900571|ref|ZP_06308513.1| hypothetical protein CRC_01932 [Cylindrospermopsis raciborskii
           CS-505]
 gi|281194371|gb|EFA69326.1| hypothetical protein CRC_01932 [Cylindrospermopsis raciborskii
           CS-505]
          Length = 187

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 65/181 (35%), Positives = 107/181 (59%), Gaps = 14/181 (7%)

Query: 41  KERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG--------------VV 86
           +ERI+F+   +   +A  + + LL+L++E+  K + LYINS G                 
Sbjct: 3   QERILFLNQPLTTDLANSLISSLLYLDSEDSSKPVYLYINSFGDPVMAGMISEMAGMEST 62

Query: 87  TAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG 146
            A +AIYDT+Q +K  I T C+GQA SM +LLLS+G KG R +LP+  I L Q      G
Sbjct: 63  NACLAIYDTIQHVKSEIVTICLGQAVSMAALLLSSGAKGKRVSLPHCSIALAQFRSATRG 122

Query: 147 QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           QA+DI+ +AQ++++ K  + +I+  N G++ E++ +  +R   M+  EA ++G++D VL 
Sbjct: 123 QATDIQVNAQEVLRKKSLILDIFSHNTGQSREKIAQDSERIFYMTPPEAREYGLIDHVLE 182

Query: 207 S 207
           +
Sbjct: 183 N 183


>gi|94502250|ref|ZP_01308735.1| ATP-dependent Clp protease proteolytic subunit 2 [Candidatus Sulcia
           muelleri str. Hc (Homalodisca coagulata)]
 gi|94451188|gb|EAT14128.1| ATP-dependent Clp protease proteolytic subunit 2 [Candidatus Sulcia
           muelleri str. Hc (Homalodisca coagulata)]
          Length = 189

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 71/165 (43%), Positives = 111/165 (67%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
           ++    + P ++E+        D++SRL+ +RI+F+   I+D +A +I AQLLFL++ + 
Sbjct: 25  DNYIKSMTPYIMEERKYNVSQMDVFSRLMMDRIIFLGTPIDDQIANIIQAQLLFLQSLDS 84

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K I +YINSPGG V +G+ IYDTMQ +KP IST C G AASM ++LL +G+KG R  L 
Sbjct: 85  NKGIQIYINSPGGSVYSGLGIYDTMQILKPEISTICTGIAASMAAILLCSGKKGKRSILK 144

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
           ++R+L+HQP G   GQ+SD+E   ++I+K+K  LN+I  ++  + 
Sbjct: 145 HSRVLIHQPIGYAKGQSSDMEITVREILKLKEELNKIISEHTNQP 189


>gi|283050417|gb|ADB07594.1| ATP-dependent Clp protease proteolytic subunit [Oryza punctata]
 gi|283050421|gb|ADB07597.1| ATP-dependent Clp protease proteolytic subunit [Oryza
           malampuzhaensis]
          Length = 191

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 64/173 (36%), Positives = 101/173 (58%), Gaps = 1/173 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           + +ER +F+  +I   +   I   +++L  E+   +I L+INSPGG + +GMAI+DTMQ 
Sbjct: 2   MYRERTLFLGQEIRSEVTNHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAIFDTMQT 61

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIERHAQD 157
           + P I T C+G AASM S +L  GE   R A P+ARI+LHQP S  +  +  +     ++
Sbjct: 62  VTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFLLEVEE 121

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           + K++  +  +Y    GK +  V + ++RD  MSA EA  +G+VD V    +D
Sbjct: 122 LHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEAKAYGLVDIVGDEMLD 174


>gi|162146853|ref|YP_001601314.1| ATP-dependent Clp protease proteolytic subunit [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209544637|ref|YP_002276866.1| ATP-dependent Clp protease proteolytic subunit [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161785430|emb|CAP54979.1| ATP-dependent Clp protease proteolytic subunit 2 [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532314|gb|ACI52251.1| Endopeptidase Clp [Gluconacetobacter diazotrophicus PAl 5]
          Length = 224

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 75/179 (41%), Positives = 111/179 (62%), Gaps = 3/179 (1%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           + SRL  +R V V G I D +A  +  +LL L A      I +YINSPGG V +G  I+D
Sbjct: 46  LESRLFDQRKVLVFGAINDKLARDVTGRLLAL-AGASDHPIDVYINSPGGHVESGDTIHD 104

Query: 95  TMQFIK--PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIE 152
            ++F+    P++    G  AS G+L+ +AG    RF LPN R LLHQP GG  G A+DI+
Sbjct: 105 MIRFVDSVAPVNVIGTGWVASAGALIFAAGNAQRRFCLPNTRFLLHQPMGGVRGPATDID 164

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
             A++IVK++ RLN ++ +  G++YE+V +  DR++ MSA EA  +G+V +V+ +  DI
Sbjct: 165 IEAREIVKMRERLNRLFARETGQSYEKVCRDTDRNYWMSADEAIAYGLVTRVINTLSDI 223


>gi|283050513|gb|ADB07666.1| ATP-dependent Clp protease proteolytic subunit [Luziola fluitans]
          Length = 191

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 64/173 (36%), Positives = 101/173 (58%), Gaps = 1/173 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           + +ER +F+  +I   +   I   +++L  E+   +I L+INSPGG + +GMAI+DTMQ 
Sbjct: 2   MYRERTLFLGQEIRCEITNHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAIFDTMQT 61

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIERHAQD 157
           + P I T C+G AASM S +L  GE   R A P+AR++LHQP S  +  +  +     ++
Sbjct: 62  VTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARVMLHQPASAYYRARTPEFLLEVEE 121

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           + K++  +  +Y    GK +  V + ++RD  MSA EA  +G+VD V    ID
Sbjct: 122 LHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEAKAYGLVDIVGDEMID 174


>gi|283050489|gb|ADB07648.1| ATP-dependent Clp protease proteolytic subunit [Potamophila
           parviflora]
          Length = 191

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 64/173 (36%), Positives = 100/173 (57%), Gaps = 1/173 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           + +ER +F+  +I   +   I   +++L  E+   +I  +INSPGG + +GMAI+DTMQ 
Sbjct: 2   MYRERTLFLGQEIRCEVTNHITGLMVYLSIEDGISDIFFFINSPGGWLISGMAIFDTMQT 61

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIERHAQD 157
           + P I T C+G AASM S +L  GE   R A P+ARI+LHQP S  +  +  +     ++
Sbjct: 62  VTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFLLEVEE 121

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           + K++  +  +Y    GK +  V + ++RD  MSA EA  +G+VD V    ID
Sbjct: 122 LHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEAKAYGLVDIVGDEMID 174


>gi|218193030|gb|EEC75457.1| hypothetical protein OsI_12017 [Oryza sativa Indica Group]
 gi|222625110|gb|EEE59242.1| hypothetical protein OsJ_11243 [Oryza sativa Japonica Group]
          Length = 278

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 70/217 (32%), Positives = 123/217 (56%), Gaps = 23/217 (10%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
           SE+    L+P ++  T  G  + D+ + LL  RI+F+   I   +A  + +QL+ L A +
Sbjct: 65  SENENPPLMPAIM--TPAG--ALDLATVLLGNRIIFIGQYINSQVAQRVISQLVTLAAVD 120

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFI-------------------KPPISTFCMGQA 111
            + +I +Y+N PGG + + +AIYD M +                    KP + T C G  
Sbjct: 121 EEADILIYLNCPGGSLYSILAIYDCMSWYILDMSICHAETVLIGFGLIKPKVGTVCFGVV 180

Query: 112 ASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVK 171
           AS  +++L+ GEKGMR+A+PNAR+++HQP G   G   ++ R   + +  + ++++++  
Sbjct: 181 ASQAAIILAGGEKGMRYAMPNARVMIHQPQGVSEGNVEEVRRQVGETIYARDKVDKMFAA 240

Query: 172 NCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
             G+T + V++  +RD  MS+SEA D+G+VD +L +R
Sbjct: 241 FTGQTLDMVQQWTERDRFMSSSEAMDFGLVDALLETR 277


>gi|288960164|ref|YP_003450504.1| ATP-dependent Clp protease, protease subunit [Azospirillum sp.
           B510]
 gi|288912472|dbj|BAI73960.1| ATP-dependent Clp protease, protease subunit [Azospirillum sp.
           B510]
          Length = 208

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 69/174 (39%), Positives = 107/174 (61%), Gaps = 1/174 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           L K R V + GQI+  +A ++ AQLL L  E+   ++++ +NSPGG V AG  I+D ++F
Sbjct: 36  LFKARTVLIFGQIDMKLAQVVSAQLLALAHESDD-DVTVVVNSPGGHVEAGDTIHDMIRF 94

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           IKP +     G  AS G  +  A  K  RF LPN R L+HQP GG  G+A+DI   A++I
Sbjct: 95  IKPRVKMLGTGWVASAGCHIYLAANKEDRFCLPNTRFLIHQPLGGTGGRATDIAIEAKEI 154

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
           ++++ RLN+I  +  G+  E+V K  DR++ M A EA D+G+V  ++    +++
Sbjct: 155 IRMRERLNKIIARETGQPLEKVAKDTDRNYWMLADEAKDYGIVSHIINRMDELK 208


>gi|148530030|gb|ABQ82222.1| ATP-dependent Clp protease proteolytic subunit 2 [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 189

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 74/179 (41%), Positives = 110/179 (61%), Gaps = 3/179 (1%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           + SRL  +R V V G I D +A  +  +LL L A      I +YINSPGG V +G  I+D
Sbjct: 12  LESRLFDQRKVLVFGAINDKLARDVTGRLLAL-AGASDHPIDVYINSPGGHVESGDTIHD 70

Query: 95  TMQFIK--PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIE 152
            ++F+    P+     G  AS G+L+ +AG    RF LPN R LLHQP GG  G A++I+
Sbjct: 71  MIRFVDSVAPVDVIGPGWVASAGALIFAAGNAQRRFCLPNTRFLLHQPMGGVRGPATEID 130

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
             A++IVK++ RLN ++ +  G++YE+V +  DR++ MSA EA  +G+V +V+ +  DI
Sbjct: 131 IEAREIVKMRERLNRLFARETGQSYEKVCRDTDRNYWMSADEAIAYGLVTRVINTLSDI 189


>gi|283050505|gb|ADB07660.1| ATP-dependent Clp protease proteolytic subunit [Zizania latifolia]
          Length = 191

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 65/173 (37%), Positives = 102/173 (58%), Gaps = 1/173 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           + +ER +F+  +I   +A  I   +++L  E+   +I L+INSPGG + +GMA++DTMQ 
Sbjct: 2   MYRERTLFLGQEIRSEIANHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAVFDTMQT 61

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIERHAQD 157
           + P I T C+G AASM S +L  GE   R A P+ARI++HQP S  +  +  +     ++
Sbjct: 62  VTPDIYTICLGMAASMASFILLGGEPTKRIAFPHARIMIHQPASAYYRARTPEFLLEVEE 121

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           + KI+  +  +Y    GK +  V + ++RD  MSA EA  +G+VD V    ID
Sbjct: 122 LHKIREMVTRVYALRTGKPFWVVSEDMERDVFMSADEAKAYGLVDIVGDEMID 174


>gi|261339094|ref|ZP_05966952.1| hypothetical protein ENTCAN_05307 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318930|gb|EFC57868.1| Clp protease [Enterobacter cancerogenus ATCC 35316]
          Length = 200

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 64/178 (35%), Positives = 110/178 (61%), Gaps = 1/178 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +  +LL+ R + ++G+I   +A  +  Q++ L++ +    I LYINS GG V AG  I+D
Sbjct: 22  LQQKLLESRSIVISGEINQELAQKVITQMILLQSVSND-PIKLYINSQGGHVEAGDTIHD 80

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            ++FI+P +     G  AS G  +  A +K  R++LPN R ++HQP GG  GQA+DIE  
Sbjct: 81  FIKFIRPEVHVIGTGWVASAGITIFLAAKKEHRYSLPNTRFMIHQPLGGVRGQATDIEIE 140

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
           A++I+++  R+N++     G+  E+V+K  DR+  MS +EA D+G+V K++    +++
Sbjct: 141 AREIIRMLDRVNKLIADATGQPLEKVKKDTDRNFWMSPAEALDYGIVGKMITHYDELK 198


>gi|283050465|gb|ADB07630.1| ATP-dependent Clp protease proteolytic subunit [Leersia oryzoides]
 gi|283050469|gb|ADB07633.1| ATP-dependent Clp protease proteolytic subunit [Leersia perrieri]
 gi|283050473|gb|ADB07636.1| ATP-dependent Clp protease proteolytic subunit [Leersia hexandra]
 gi|283050481|gb|ADB07642.1| ATP-dependent Clp protease proteolytic subunit [Maltebrunia
           letestui]
 gi|283050485|gb|ADB07645.1| ATP-dependent Clp protease proteolytic subunit [Prosphytochloa
           prehensilis]
          Length = 191

 Score =  185 bits (471), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 65/173 (37%), Positives = 101/173 (58%), Gaps = 1/173 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           + +ER +F+  +I   +   I   +++L  E+   +I L+INSPGG + +GMAI+DTMQ 
Sbjct: 2   MYRERTLFLGQEIRSEVTNHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAIFDTMQT 61

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIERHAQD 157
           + P I T C+G AASM S +L  GE   R A P+ARI+LHQP S  +  +  +     ++
Sbjct: 62  VTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFLLEVEE 121

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           + K++  +  +Y    GK +  V + ++RD  MSA EA  +G+VD V    ID
Sbjct: 122 LHKVREMVTRVYALRTGKPFWVVSEDMERDVFMSADEAKAYGLVDIVGDEMID 174


>gi|261415968|ref|YP_003249651.1| Endopeptidase Clp [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|261372424|gb|ACX75169.1| Endopeptidase Clp [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|302327177|gb|ADL26378.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 193

 Score =  185 bits (471), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 75/168 (44%), Positives = 115/168 (68%), Gaps = 3/168 (1%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           L  +R +F+ G ++D  A  I  QLL+L++ N + +I  +INSPGGV+++G+AIYD M  
Sbjct: 23  LASKRRIFLWGGVDDESAERIVKQLLYLDSLNHE-DIIFFINSPGGVISSGLAIYDCMNA 81

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP--SGGFSGQASDIERHAQ 156
           I+  + T C GQAASMG++LL+AG KG R A PNARI++HQP   G     ASDI+  A+
Sbjct: 82  IQSDVVTVCCGQAASMGAVLLTAGAKGKRCAWPNARIMIHQPLIHGEIVAPASDIQIQAE 141

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           ++++I+    +I  +  G T E++++  +RD+ MSA EA ++G+VDKV
Sbjct: 142 EMLRIRGITGKILAETSGHTIEQIDRDTERDNFMSAEEARNYGLVDKV 189


>gi|15618431|ref|NP_224716.1| ATP-dependent Clp protease proteolytic subunit [Chlamydophila
           pneumoniae CWL029]
 gi|15836051|ref|NP_300575.1| ATP-dependent Clp protease proteolytic subunit [Chlamydophila
           pneumoniae J138]
 gi|16752522|ref|NP_444784.1| ATP-dependent Clp protease proteolytic subunit [Chlamydophila
           pneumoniae AR39]
 gi|33241872|ref|NP_876813.1| ATP-dependent Clp protease proteolytic subunit [Chlamydophila
           pneumoniae TW-183]
 gi|6831515|sp|Q9Z832|CLPP1_CHLPN RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|4376809|gb|AAD18660.1| CLP Protease [Chlamydophila pneumoniae CWL029]
 gi|7189161|gb|AAF38099.1| ATP-dependent Clp protease, proteolytic subunit [Chlamydophila
           pneumoniae AR39]
 gi|8978891|dbj|BAA98726.1| CLP protease [Chlamydophila pneumoniae J138]
 gi|33236381|gb|AAP98470.1| endopeptidase [Chlamydophila pneumoniae TW-183]
 gi|269303395|gb|ACZ33495.1| Clp protease [Chlamydophila pneumoniae LPCoLN]
          Length = 191

 Score =  185 bits (471), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 73/179 (40%), Positives = 116/179 (64%), Gaps = 2/179 (1%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I   LL+ R VF +  + +  A+    +L +LE ++P K I   INSPGG V AG A++D
Sbjct: 13  IEKELLEARRVFFSEPVTEKSASDAIKKLWYLELKDPGKPIVFVINSPGGSVDAGFAVWD 72

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS--GGFSGQASDIE 152
            ++ +  P++T   G AASMGS+L      G RFA P++RI++HQPS  G  +GQA+D++
Sbjct: 73  QIKMLTSPVTTVVTGLAASMGSVLSLCAAPGRRFATPHSRIMIHQPSIGGPITGQATDLD 132

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
            HA++I+K K R+ ++YV+   +  + +EK +DRD  M+A+EA D+G++D +L S  D+
Sbjct: 133 IHAREILKTKARIIDVYVEATNQPRDIIEKAIDRDMWMTANEAKDFGLLDGILFSFNDL 191


>gi|188534632|ref|YP_001908429.1| ATP-dependent Clp protease proteolytic subunit [Erwinia
           tasmaniensis Et1/99]
 gi|188029674|emb|CAO97553.1| Putative ATP-dependent Clp protease proteolytic subunit [Erwinia
           tasmaniensis Et1/99]
          Length = 198

 Score =  185 bits (471), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 67/198 (33%), Positives = 115/198 (58%), Gaps = 2/198 (1%)

Query: 16  LGLVPMVVEQTNRGERSYDIY-SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
           +   P   E+  + E+S  +  ++LL+ R + ++G+I   +A  + AQLL L+ E   + 
Sbjct: 1   MSEEPEKKEENGQEEKSSALAVNKLLQSRSIIISGEINQALAEKVTAQLLILQ-EMGDEP 59

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I L+INS GG V AG  I+D ++F++P +     G  AS G  +  A  K  R+ LPN R
Sbjct: 60  IKLFINSQGGHVEAGDTIHDMIRFVRPEVLVIGTGWVASAGITIFLAANKENRYTLPNTR 119

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
            ++HQP GG  G+ SDIE  A+++++ + R+N++     G+  E+VEK  D ++ MS  +
Sbjct: 120 FMIHQPLGGVRGKVSDIEIEAKELLRARARINQLISNATGQPLEKVEKDTDSNYWMSPEQ 179

Query: 195 ACDWGVVDKVLMSRIDIE 212
           A D+G+   V+ S  +++
Sbjct: 180 AIDYGIATHVITSWNELK 197


>gi|302528952|ref|ZP_07281294.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sp. AA4]
 gi|302437847|gb|EFL09663.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sp. AA4]
          Length = 194

 Score =  185 bits (470), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 75/149 (50%), Positives = 102/149 (68%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           +  ++ RLL+ERIV +  ++ D +A  + AQLL L+A++ + +I  YINSPGG VTAG A
Sbjct: 45  TDSVFERLLQERIVVLGSEVNDEVANRLTAQLLLLDADDAESDIRFYINSPGGSVTAGFA 104

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYDTMQ I+P ++T+ MG AASMG  LLS+G  G R+ALP+ARIL+HQPS G  G ASDI
Sbjct: 105 IYDTMQLIRPDVATYAMGMAASMGQFLLSSGTPGKRYALPHARILMHQPSAGVGGTASDI 164

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
              A    K K+ L  I  +  G+T E++
Sbjct: 165 AIQADLFNKWKQELARITAEQTGQTTEQI 193


>gi|209519436|ref|ZP_03268232.1| Endopeptidase Clp [Burkholderia sp. H160]
 gi|209500103|gb|EEA00163.1| Endopeptidase Clp [Burkholderia sp. H160]
          Length = 215

 Score =  185 bits (470), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 75/179 (41%), Positives = 113/179 (63%), Gaps = 3/179 (1%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           + +RLL ER V V G I+D +A  +CA+LL L +E+    I ++INSPGG V +G  I+D
Sbjct: 36  LENRLLSERRVLVFGTIDDKLARDVCARLLTLASESSN-PIDVFINSPGGHVESGDTIHD 94

Query: 95  TMQFI--KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIE 152
            ++FI    P+     G  AS G+ +     K  R+ALPN R +LHQP GG  GQA+DI 
Sbjct: 95  MVRFIDSTAPVRMVGTGWVASAGATIYLGARKEHRYALPNTRFMLHQPLGGAQGQATDIA 154

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
             A++IVKI+ R+N +  +  G+ YE+V +  DR++ M+A EA ++GVV +++ S  D+
Sbjct: 155 IEAREIVKIRERINRLIAEATGQQYEKVAEDTDRNYWMTAGEALEYGVVGRLIQSLADL 213


>gi|283050501|gb|ADB07657.1| ATP-dependent Clp protease proteolytic subunit [Zizania aquatica]
          Length = 191

 Score =  185 bits (469), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 63/173 (36%), Positives = 101/173 (58%), Gaps = 1/173 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           + +ER +F+  +I   +A  I   +++L  E+   +I L+INSPGG + +GM ++DTMQ 
Sbjct: 2   MYRERTLFLGQEIRSEIANHITGLMVYLSIEDGISDIFLFINSPGGWLISGMGVFDTMQT 61

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS-DIERHAQD 157
           + P I T C+G AASM S +L  GE   R A P+ARI++HQP+  +    + +     ++
Sbjct: 62  VTPDIYTICLGMAASMASFILLGGEPTKRIAFPHARIMIHQPASAYYRTRTPEFLLEVEE 121

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           + KI+  +  +Y    GK +  V + ++RD  MSA EA  +G+VD V    ID
Sbjct: 122 LHKIREMVTRVYALRTGKPFWVVSEDMERDVFMSADEAKAYGLVDIVGDEMID 174


>gi|270285501|ref|ZP_06194895.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia muridarum
           Nigg]
 gi|270289512|ref|ZP_06195814.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia muridarum
           Weiss]
 gi|301336898|ref|ZP_07225100.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia muridarum
           MopnTet14]
 gi|14194529|sp|Q9PJW1|CLPP1_CHLMU RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
          Length = 192

 Score =  185 bits (469), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 77/182 (42%), Positives = 117/182 (64%), Gaps = 3/182 (1%)

Query: 33  YDIYSR-LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
            DI  R LL  R +F +  + +  A     +L +LE  +P + I   INSPGG V AG A
Sbjct: 11  QDIIDRKLLDSRRIFFSEPVTEKSAAEAIKKLWYLELTSPGQPIVFVINSPGGSVDAGFA 70

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS--GGFSGQAS 149
           ++D ++ I  P++T   G AASMGS+L      G RFA P+ARI++HQPS  G  +GQA+
Sbjct: 71  VWDQIKMISSPVTTVVTGLAASMGSVLSLCAAPGRRFATPHARIMIHQPSIGGTITGQAT 130

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           D++ HA++I+K K R+ ++YV+  G++ E +EK +DRD  MSA+EA ++G++D +L S  
Sbjct: 131 DLDIHAREILKTKARIIDVYVEATGQSREVIEKAIDRDMWMSANEAMEFGLLDGILFSFN 190

Query: 210 DI 211
           D+
Sbjct: 191 DL 192


>gi|302024225|ref|ZP_07249436.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus suis
           05HAS68]
          Length = 168

 Score =  185 bits (469), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 74/164 (45%), Positives = 112/164 (68%), Gaps = 2/164 (1%)

Query: 46  FVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIST 105
            +TG +ED+MA  I AQLL+L+A++P K+I LY+N+PGG V+AG+AI DTM FIK  + T
Sbjct: 1   MLTGPVEDNMANSIIAQLLYLDAQDPTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADVQT 60

Query: 106 FCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS--GGFSGQASDIERHAQDIVKIKR 163
             MG AASMG+++ S+G KG RF LPNA  ++HQP    G   Q +D+   A+ ++K + 
Sbjct: 61  IVMGTAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRN 120

Query: 164 RLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           +L +I   N GKT +++ K  +RD+ MSA E   +G +D+++ +
Sbjct: 121 KLEKILADNSGKTVKQIHKDAERDYWMSAEETLAYGFIDQIVDN 164


>gi|282891192|ref|ZP_06299695.1| hypothetical protein pah_c048o018 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498885|gb|EFB41201.1| hypothetical protein pah_c048o018 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 199

 Score =  184 bits (468), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 75/188 (39%), Positives = 114/188 (60%), Gaps = 4/188 (2%)

Query: 26  TNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV 85
           T + E   D    LL+ R +F++  ++ + A  I  +L +LE   P K I   INSPGG 
Sbjct: 13  TPKTEEKID--RALLEARRIFLSDAVDSNTAADIIKKLWYLELTAPGKPILFVINSPGGS 70

Query: 86  VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP--SGG 143
           V +G AI+D ++ I  P++T   G AASMGS+L  AG    RFA PN+R ++HQP   G 
Sbjct: 71  VDSGFAIWDQIKMISSPVTTLVTGLAASMGSVLSLAGAPKRRFATPNSRFMIHQPLIGGV 130

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
             GQA+D+E  A++++K +  L E+Y++  GK +  +EK +DRD  MSA EA ++G++  
Sbjct: 131 IKGQATDLEIQAKEMLKTRNTLIELYMRETGKDFAAIEKAIDRDTWMSAQEAYEFGLLSG 190

Query: 204 VLMSRIDI 211
           V+ S  D+
Sbjct: 191 VVESYKDL 198


>gi|15835330|ref|NP_297089.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia muridarum
           Nigg]
 gi|7190745|gb|AAF39527.1| ATP-dependent Clp protease, proteolytic subunit [Chlamydia
           muridarum Nigg]
          Length = 196

 Score =  184 bits (468), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 77/182 (42%), Positives = 117/182 (64%), Gaps = 3/182 (1%)

Query: 33  YDIYSR-LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
            DI  R LL  R +F +  + +  A     +L +LE  +P + I   INSPGG V AG A
Sbjct: 15  QDIIDRKLLDSRRIFFSEPVTEKSAAEAIKKLWYLELTSPGQPIVFVINSPGGSVDAGFA 74

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS--GGFSGQAS 149
           ++D ++ I  P++T   G AASMGS+L      G RFA P+ARI++HQPS  G  +GQA+
Sbjct: 75  VWDQIKMISSPVTTVVTGLAASMGSVLSLCAAPGRRFATPHARIMIHQPSIGGTITGQAT 134

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           D++ HA++I+K K R+ ++YV+  G++ E +EK +DRD  MSA+EA ++G++D +L S  
Sbjct: 135 DLDIHAREILKTKARIIDVYVEATGQSREVIEKAIDRDMWMSANEAMEFGLLDGILFSFN 194

Query: 210 DI 211
           D+
Sbjct: 195 DL 196


>gi|162450511|ref|YP_001612878.1| endopeptidase Clp [Sorangium cellulosum 'So ce 56']
 gi|161161093|emb|CAN92398.1| Endopeptidase Clp [Sorangium cellulosum 'So ce 56']
          Length = 205

 Score =  184 bits (467), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 69/177 (38%), Positives = 108/177 (61%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           + S LL+ R V + G+I   +A    AQLL L +++ +K I + I+SPGG V +G  I+D
Sbjct: 29  VQSSLLRSRTVLIFGEITSELAQATTAQLLALASDDGEKPIRILIHSPGGHVESGDTIHD 88

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            ++FI+P +     G  AS G+L+  A  +  RFALPN R LLHQP GG  G ASDIE  
Sbjct: 89  VIRFIRPEVKVIGTGWVASAGALIFVAARRENRFALPNTRFLLHQPLGGVRGPASDIEIE 148

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           A  I+  + RLN I+ +  G+   ++ +  +R+  M+A EA ++G+V +++ S ++I
Sbjct: 149 AAQIMAARERLNRIFAEATGQAPAKIAQETERNLWMTAREAKEYGLVHRIVESALEI 205


>gi|58039954|ref|YP_191918.1| ATP-dependent Clp protease proteolytic subunit [Gluconobacter
           oxydans 621H]
 gi|67460437|sp|Q5FQT4|CLPP2_GLUOX RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|58002368|gb|AAW61262.1| ATP-dependent Clp protease proteolytic subunit [Gluconobacter
           oxydans 621H]
          Length = 223

 Score =  184 bits (467), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 74/180 (41%), Positives = 113/180 (62%), Gaps = 3/180 (1%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +  RL  +R V + G I D +A  +  +LL L A    K I +Y+NSPGG V +G  I+D
Sbjct: 45  LEGRLFDQRKVLIFGGINDKIARDVTGRLLAL-AGTSDKPIDVYVNSPGGHVESGDTIHD 103

Query: 95  TMQFIK--PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIE 152
            ++F+    PI+    G  AS G+L+ +AG    R  LPN R LLHQP GG  G A+DI+
Sbjct: 104 MIRFVDSIAPINMIGTGWVASAGALIYAAGRPERRVCLPNTRFLLHQPMGGVRGPATDID 163

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
             A++I+K++ RLN I+ K  G+TYE+V K  DR++ MSA+EA  +G+V++++ S  +++
Sbjct: 164 IEAREIIKMRERLNRIFAKETGQTYEKVAKDTDRNYWMSANEAIAYGLVNRIIHSATELK 223


>gi|15605158|ref|NP_219943.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis D/UW-3/CX]
 gi|76789165|ref|YP_328251.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis A/HAR-13]
 gi|237802858|ref|YP_002888052.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis B/Jali20/OT]
 gi|237804780|ref|YP_002888934.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis B/TZ1A828/OT]
 gi|255311239|ref|ZP_05353809.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis 6276]
 gi|255317541|ref|ZP_05358787.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis 6276s]
 gi|255348798|ref|ZP_05380805.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis 70]
 gi|255503338|ref|ZP_05381728.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis 70s]
 gi|6840804|sp|P38002|CLPP1_CHLTR RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|92087002|sp|Q3KLR9|CLPP1_CHLTA RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|3328861|gb|AAC68028.1| CLP Protease [Chlamydia trachomatis D/UW-3/CX]
 gi|76167695|gb|AAX50703.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis A/HAR-13]
 gi|231273080|emb|CAX09993.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis B/TZ1A828/OT]
 gi|231274092|emb|CAX10886.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis B/Jali20/OT]
 gi|296435954|gb|ADH18128.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis G/9768]
 gi|296436881|gb|ADH19051.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis G/11222]
 gi|296437815|gb|ADH19976.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis G/11074]
 gi|297140315|gb|ADH97073.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis G/9301]
          Length = 192

 Score =  183 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 77/179 (43%), Positives = 117/179 (65%), Gaps = 2/179 (1%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I  +LL  R +F +  + +  AT    +L +LE  NP + I   INSPGG V AG A++D
Sbjct: 14  IDRKLLDSRRIFFSEPVTEKSATEAIKKLWYLELTNPGQPIVFVINSPGGSVDAGFAVWD 73

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS--GGFSGQASDIE 152
            ++ I  P++T   G AASMGS+L      G RFA P+ARI++HQPS  G  +GQA+D++
Sbjct: 74  QIKMISSPLTTVVTGLAASMGSVLSLCAVPGRRFATPHARIMIHQPSIGGTITGQATDLD 133

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
            HA++I+K K R+ ++YV+  G++ E +EK +DRD  MSA+EA ++G++D +L S  D+
Sbjct: 134 IHAREILKTKARIIDVYVEATGQSREVIEKAIDRDMWMSANEAMEFGLLDGILFSFNDL 192


>gi|255507017|ref|ZP_05382656.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis D(s)2923]
 gi|289525475|emb|CBJ14952.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis Sweden2]
 gi|296435027|gb|ADH17205.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis E/150]
 gi|296438747|gb|ADH20900.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis E/11023]
          Length = 192

 Score =  183 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 76/179 (42%), Positives = 116/179 (64%), Gaps = 2/179 (1%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I  +LL  R +F +  + +  A     +L +LE  NP + I   INSPGG V AG A++D
Sbjct: 14  IDRKLLDSRRIFFSEPVTEKSAAEAIKKLWYLELTNPGQPIVFVINSPGGSVDAGFAVWD 73

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS--GGFSGQASDIE 152
            ++ I  P++T   G AASMGS+L      G RFA P+ARI++HQPS  G  +GQA+D++
Sbjct: 74  QIKMISSPLTTVVTGLAASMGSVLSLCAVPGRRFATPHARIMIHQPSIGGTITGQATDLD 133

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
            HA++I+K K R+ ++YV+  G++ E +EK +DRD  MSA+EA ++G++D +L S  D+
Sbjct: 134 IHAREILKTKARIIDVYVEATGQSREVIEKAIDRDMWMSANEAIEFGLLDGILFSFNDL 192


>gi|166154644|ref|YP_001654762.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis 434/Bu]
 gi|166155519|ref|YP_001653774.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis L2b/UCH-1/proctitis]
 gi|301335911|ref|ZP_07224155.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis L2tet1]
 gi|190358743|sp|B0B803|CLPP1_CHLT2 RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
           AltName: Full=Endopeptidase Clp 1
 gi|165930632|emb|CAP04129.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis 434/Bu]
 gi|165931507|emb|CAP07083.1| ATP-dependent Clp protease proteolytic subunit [Chlamydia
           trachomatis L2b/UCH-1/proctitis]
          Length = 192

 Score =  183 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 76/179 (42%), Positives = 116/179 (64%), Gaps = 2/179 (1%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I  +LL  R +F +  + +  A     +L +LE  NP + I   INSPGG V AG A++D
Sbjct: 14  IDRKLLDSRRIFFSEPVTEKSAAEAIKKLWYLELTNPGQPIVFVINSPGGSVDAGFAVWD 73

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS--GGFSGQASDIE 152
            ++ I  P++T   G AASMGS+L      G RFA P+ARI++HQPS  G  +GQA+D++
Sbjct: 74  QIKMISSPLTTVVTGLAASMGSVLSLCAVPGRRFATPHARIMIHQPSIGGTITGQATDLD 133

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
            HA++I+K K R+ ++YV+  G++ E +EK +DRD  MSA+EA ++G++D +L S  D+
Sbjct: 134 IHAREILKTKARIIDVYVEATGQSPEVIEKAIDRDMWMSANEAMEFGLLDGILFSFNDL 192


>gi|32307600|gb|AAP79205.1| ClpP protease [Bigelowiella natans]
          Length = 260

 Score =  183 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 65/184 (35%), Positives = 103/184 (55%)

Query: 33  YDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI 92
            DI         +F TG+I D +   +   +LFL  ++    I L INSPGG + AG+A+
Sbjct: 53  LDISDFFENNNFLFCTGEINDQLVNSLINSILFLSYKDNNSSIKLCINSPGGSIMAGLAL 112

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIE 152
           YD + +     +T  +G AASMG+ LL++G  G+RF+ PN RI++HQP GG  G A DIE
Sbjct: 113 YDAIVWTNKSTNTISLGLAASMGAFLLASGTNGLRFSTPNTRIMIHQPIGGIQGNAVDIE 172

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
              ++++  +  +N +  K   ++   +E   DRD  M+  EA ++G++D+VL  R   +
Sbjct: 173 IQVKELLYHRNNINYLLSKFTDQSLSMIESDTDRDKYMTPLEAKEYGIIDRVLNCRDSFK 232

Query: 213 EKSK 216
              K
Sbjct: 233 PSIK 236


>gi|308799978|ref|XP_003074770.1| ClpP3 ATP-dependent Clp protease proteolytic subunit ClpR, putat
           (IC) [Ostreococcus tauri]
 gi|119358788|emb|CAL52028.2| ClpP3 ATP-dependent Clp protease proteolytic subunit ClpR, putat
           (IC) [Ostreococcus tauri]
          Length = 244

 Score =  183 bits (465), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 67/184 (36%), Positives = 107/184 (58%), Gaps = 8/184 (4%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV---- 85
           +   D+ S + +ERIV++   +   +  LI A+LL+L+ E+ +K I LYINS G      
Sbjct: 61  QSPPDLPSFIFQERIVYLGMTLVPSVTELILAELLYLQYEDKKKPIQLYINSTGSSKDGK 120

Query: 86  ----VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
                +   AIYDT+Q++ PP+ T  +G A    ++LL++G KG R ALP+A I+L QP 
Sbjct: 121 KYGYDSEAFAIYDTIQYVSPPVHTIAVGTAWGEAAMLLASGSKGQRAALPSASIMLKQPL 180

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
             F GQAS++E   Q++   K+++ +I  K  G+    +E  ++R      SEA  +G++
Sbjct: 181 SSFRGQASELEIQRQEMRNTKKQMLDILAKTTGRDIATIETDINRPLYFEPSEAIKYGLI 240

Query: 202 DKVL 205
           DKVL
Sbjct: 241 DKVL 244


>gi|161899169|ref|XP_001712811.1| Clp protease [Bigelowiella natans]
 gi|75756304|gb|ABA27199.1| Clp protease [Bigelowiella natans]
          Length = 264

 Score =  183 bits (465), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 65/184 (35%), Positives = 103/184 (55%)

Query: 33  YDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI 92
            DI         +F TG+I D +   +   +LFL  ++    I L INSPGG + AG+A+
Sbjct: 57  LDISDFFENNNFLFCTGEINDQLVNSLINSILFLSYKDNNSSIKLCINSPGGSIMAGLAL 116

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIE 152
           YD + +     +T  +G AASMG+ LL++G  G+RF+ PN RI++HQP GG  G A DIE
Sbjct: 117 YDAIVWTNKSTNTISLGLAASMGAFLLASGTNGLRFSTPNTRIMIHQPIGGIQGNAVDIE 176

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
              ++++  +  +N +  K   ++   +E   DRD  M+  EA ++G++D+VL  R   +
Sbjct: 177 IQVKELLYHRNNINYLLSKFTDQSLSMIESDTDRDKYMTPLEAKEYGIIDRVLNCRDSFK 236

Query: 213 EKSK 216
              K
Sbjct: 237 PSIK 240


>gi|296388170|ref|ZP_06877645.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa PAb1]
          Length = 201

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 71/185 (38%), Positives = 115/185 (62%), Gaps = 1/185 (0%)

Query: 27  NRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVV 86
           + G     +    LK R VFVTG +++ MA  +  QL  L +    + I +++NSPGG V
Sbjct: 13  SHGAIGAKLMEYALKVRKVFVTGGVDEKMAKDVVQQLHILASI-SDEPIYMFVNSPGGHV 71

Query: 87  TAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG 146
            +G  I+D ++FI P +     G  AS G+L+ +A +K  R++LPN R LLHQPSGG  G
Sbjct: 72  ESGDMIFDAIRFITPKVIMIGSGSVASAGALIYAAADKENRYSLPNTRFLLHQPSGGIQG 131

Query: 147 QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
            AS+IE + ++IV++K RL+ I+ +  G+T E++    +RD  ++A EA  +G+V+K+++
Sbjct: 132 PASNIEIYRREIVRMKERLDRIFAEATGQTPEKISADTERDFWLNAEEAVQYGLVNKIIV 191

Query: 207 SRIDI 211
           S  +I
Sbjct: 192 SEREI 196


>gi|15598522|ref|NP_252016.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa PAO1]
 gi|107102858|ref|ZP_01366776.1| hypothetical protein PaerPA_01003926 [Pseudomonas aeruginosa PACS2]
 gi|116051341|ref|YP_789826.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|218890478|ref|YP_002439342.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa LESB58]
 gi|254236288|ref|ZP_04929611.1| hypothetical protein PACG_02259 [Pseudomonas aeruginosa C3719]
 gi|254242013|ref|ZP_04935335.1| hypothetical protein PA2G_02739 [Pseudomonas aeruginosa 2192]
 gi|313108675|ref|ZP_07794673.1| putative ATP-dependent Clp protease proteolytic subunit
           [Pseudomonas aeruginosa 39016]
 gi|18203008|sp|Q9HYR9|CLPP2_PSEAE RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|9949457|gb|AAG06714.1|AE004755_1 probable Clp-family ATP-dependent protease [Pseudomonas aeruginosa
           PAO1]
 gi|115586562|gb|ABJ12577.1| putative ATP-dependent Clp protease proteolytic subunit
           [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126168219|gb|EAZ53730.1| hypothetical protein PACG_02259 [Pseudomonas aeruginosa C3719]
 gi|126195391|gb|EAZ59454.1| hypothetical protein PA2G_02739 [Pseudomonas aeruginosa 2192]
 gi|218770701|emb|CAW26466.1| probable Clp-family ATP-dependent protease [Pseudomonas aeruginosa
           LESB58]
 gi|310881175|gb|EFQ39769.1| putative ATP-dependent Clp protease proteolytic subunit
           [Pseudomonas aeruginosa 39016]
          Length = 201

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 71/185 (38%), Positives = 115/185 (62%), Gaps = 1/185 (0%)

Query: 27  NRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVV 86
           + G     +    LK R VFVTG +++ MA  +  QL  L + +    I +++NSPGG V
Sbjct: 13  SHGAIGAKLMEYALKVRKVFVTGGVDEKMAKDVVQQLHILASISDD-PIYMFVNSPGGHV 71

Query: 87  TAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG 146
            +G  I+D ++FI P +     G  AS G+L+ +A +K  R++LPN R LLHQPSGG  G
Sbjct: 72  ESGDMIFDAIRFITPKVIMIGSGSVASAGALIYAAADKENRYSLPNTRFLLHQPSGGIQG 131

Query: 147 QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
            AS+IE + ++IV++K RL+ I+ +  G+T E++    +RD  ++A EA  +G+V+K+++
Sbjct: 132 PASNIEIYRREIVRMKERLDRIFAEATGQTPEKISADTERDFWLNAEEAVQYGLVNKIIV 191

Query: 207 SRIDI 211
           S  +I
Sbjct: 192 SEREI 196


>gi|297748561|gb|ADI51107.1| hypothetical protein CTDEC_0431 [Chlamydia trachomatis D-EC]
 gi|297749441|gb|ADI52119.1| hypothetical protein CTDLC_0431 [Chlamydia trachomatis D-LC]
          Length = 196

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 77/179 (43%), Positives = 117/179 (65%), Gaps = 2/179 (1%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I  +LL  R +F +  + +  AT    +L +LE  NP + I   INSPGG V AG A++D
Sbjct: 18  IDRKLLDSRRIFFSEPVTEKSATEAIKKLWYLELTNPGQPIVFVINSPGGSVDAGFAVWD 77

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS--GGFSGQASDIE 152
            ++ I  P++T   G AASMGS+L      G RFA P+ARI++HQPS  G  +GQA+D++
Sbjct: 78  QIKMISSPLTTVVTGLAASMGSVLSLCAVPGRRFATPHARIMIHQPSIGGTITGQATDLD 137

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
            HA++I+K K R+ ++YV+  G++ E +EK +DRD  MSA+EA ++G++D +L S  D+
Sbjct: 138 IHAREILKTKARIIDVYVEATGQSREVIEKAIDRDMWMSANEAMEFGLLDGILFSFNDL 196


>gi|297745678|emb|CBI40932.3| unnamed protein product [Vitis vinifera]
          Length = 282

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 79/221 (35%), Positives = 122/221 (55%), Gaps = 11/221 (4%)

Query: 2   SFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICA 61
           SF G   K        ++P     +   +   D+ S L K RIV++   +   +  LI A
Sbjct: 53  SFSGSHAK--RGGVTMVIP-FTRGSALDQPPPDLPSYLFKNRIVYLGMSLVPSVTELILA 109

Query: 62  QLLFLEAENPQKEISLYINSPG--------GVVTAGMAIYDTMQFIKPPISTFCMGQAAS 113
           + L+L+ ++ +K I LYINS G        G  T   AIYD M ++K PI T C+G A  
Sbjct: 110 EFLYLQYDDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKSPIFTLCVGNAWG 169

Query: 114 MGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC 173
             +LLL+AG KG R ALP++ I++ QP   F GQA+DI+   +++  +K  L ++Y K+ 
Sbjct: 170 EAALLLAAGAKGNRSALPSSTIMIKQPIARFQGQATDIDLARKEVKNVKAELVKLYAKHI 229

Query: 174 GKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           GK+ EE+E  + R    S SEA ++G++DKVL +    E++
Sbjct: 230 GKSPEEIEADIRRPKYFSPSEAVEYGIIDKVLYNERSSEDR 270


>gi|242052591|ref|XP_002455441.1| hypothetical protein SORBIDRAFT_03g010870 [Sorghum bicolor]
 gi|241927416|gb|EES00561.1| hypothetical protein SORBIDRAFT_03g010870 [Sorghum bicolor]
          Length = 291

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 73/209 (34%), Positives = 121/209 (57%), Gaps = 9/209 (4%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           + + DV   +VP  +  T   +   D+ S L K RIV++   +   +  L+ A+ L+L+ 
Sbjct: 67  RGARDVVAMVVP-FLRGTAWEQPPPDLASFLYKNRIVYLGMCLVPSVTELMLAEFLYLQY 125

Query: 69  ENPQKEISLYINSPG--------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           ++ +K I LYINS G        G  T  +A+YD M+++K PI T C+G A    +LLL+
Sbjct: 126 DDAEKPIYLYINSTGTTKNGEKLGYETEALAVYDAMRYVKVPIFTLCVGNAWGEAALLLA 185

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG R ALP++ I++ QP G F GQA+D++   ++I  +K  + ++  ++ GK  EE+
Sbjct: 186 AGAKGNRAALPSSTIMIKQPIGRFQGQATDVDIARKEIRNVKIEMVKLLARHIGKPIEEI 245

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRI 209
            + + R    S SEA D+G++DKV+ +  
Sbjct: 246 ARDIRRPKYFSPSEAVDYGIIDKVIYNEK 274


>gi|283050477|gb|ADB07639.1| ATP-dependent Clp protease proteolytic subunit [Leersia
           tisserantii]
          Length = 191

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 65/173 (37%), Positives = 100/173 (57%), Gaps = 1/173 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           + +ER +F+  +I   +   I   +++L  E+   +I L+INSPGG + +GMAI+DTMQ 
Sbjct: 2   MYRERTLFLGQEIRSEVTNHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAIFDTMQT 61

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIERHAQD 157
           + P I T C+G AASM S +L  GE   R A P ARI+LHQP S  +  +  +     ++
Sbjct: 62  VTPDIYTICLGIAASMASFILLGGEPTKRIAFPRARIMLHQPASAYYRARTPEFLLEVEE 121

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           + K++  +  +Y    GK +  V + ++RD  MSA EA  +G+VD V    ID
Sbjct: 122 LHKVREMVTRVYALRTGKPFWVVSEDMERDVFMSADEAKAYGLVDIVGDEMID 174


>gi|296139201|ref|YP_003646444.1| endopeptidase Clp [Tsukamurella paurometabola DSM 20162]
 gi|296027335|gb|ADG78105.1| Endopeptidase Clp [Tsukamurella paurometabola DSM 20162]
          Length = 206

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 72/193 (37%), Positives = 107/193 (55%), Gaps = 10/193 (5%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP   E+  R          L  +R+V + G ++D    L+  QLL L A+   +EI+L+
Sbjct: 7   VPQFTERVRR---------ELYDQRVVILDGPLDDDNGALLATQLLSLAAD-SDREIALW 56

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           I+SPGG V A +AI D M+ I   +ST   G A S G  LLSAG +G R ALP+AR+L+H
Sbjct: 57  IHSPGGSVPAMLAIRDVMRLIPCDVSTLVFGIAYSAGQFLLSAGTRGKRRALPHARVLMH 116

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           Q S G  G A DIE  A D+   +  +  +  ++ G+  E++ +    D   +A EA D+
Sbjct: 117 QGSAGIGGTAVDIELQAGDLRHTRDTVLGLIAEDTGRPEEQIFEDSLHDRWYTAREAQDY 176

Query: 199 GVVDKVLMSRIDI 211
           G +D+++ S  DI
Sbjct: 177 GFIDEIVESFDDI 189


>gi|255635880|gb|ACU18287.1| unknown [Glycine max]
          Length = 304

 Score =  182 bits (462), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 81/224 (36%), Positives = 124/224 (55%), Gaps = 17/224 (7%)

Query: 2   SFEGCAKKDSEDVFLGLVPMVVE---QTNRGERSYDIYSRLLKERIVFVTGQIEDHMATL 58
           SF G   K       G+V MV+     +   +   D+ S L K RIV++   +   +  L
Sbjct: 75  SFRGSNSKR------GVVTMVIPFQRGSAWEQPPPDLASYLYKNRIVYLGMSLVPSVTEL 128

Query: 59  ICAQLLFLEAENPQKEISLYINSPG--------GVVTAGMAIYDTMQFIKPPISTFCMGQ 110
           I A+ L+L+ E+  K I LYINS G        G  T   AIYD M+++KPPI T C+G 
Sbjct: 129 ILAEFLYLQYEDDDKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMRYVKPPIFTLCVGN 188

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYV 170
           A    +LLL+AG KG R ALP++ I++ QP   F GQA+D+    +++  +K  L ++Y 
Sbjct: 189 AWGEAALLLAAGAKGNRSALPSSTIMIRQPIARFQGQATDVNLARREVNNVKTELVKLYA 248

Query: 171 KNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           K+  KT E++E  + R    S SEA ++G++DKV+ +    E++
Sbjct: 249 KHMEKTPEQIEADIQRPKYFSPSEAVEYGIIDKVIYNDRGSEDR 292


>gi|166201969|gb|ABY84440.1| ATP-dependent protease proteolytic subunit [Oenothera macrocarpa]
          Length = 408

 Score =  182 bits (462), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 67/189 (35%), Positives = 110/189 (58%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGE--RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E     D+++ L + R VF+  ++ +     I + ++FL  ENP+K I 
Sbjct: 5   VPRVAFRVPGDENASWVDLFNGLFRARSVFLGQELNEEGGNDIASLMIFLALENPKKSIY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            ++NSPGG+  AG+AI DTM F+ P + T  +G  ASM S LL+ G  G R A  + R +
Sbjct: 65  FFLNSPGGLALAGLAISDTMDFVTPDVYTLGLGLVASMASFLLACGTPGKRRASDHMRAM 124

Query: 137 LHQPSGGFSGQAS-DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQPS  F  +A+ +JE   +++  I+  + + YV+  G+    +++ L RD  MSA+E+
Sbjct: 125 IHQPSSKFLNEAALNJEFSRRELQSIRDIVIKTYVEKTGQDARVIKEDLRRDSFMSATES 184

Query: 196 CDWGVVDKV 204
            D+G+VD V
Sbjct: 185 KDYGLVDDV 193


>gi|271969828|ref|YP_003344024.1| endopeptidase Clp [Streptosporangium roseum DSM 43021]
 gi|270513003|gb|ACZ91281.1| Endopeptidase Clp [Streptosporangium roseum DSM 43021]
          Length = 208

 Score =  181 bits (461), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 62/179 (34%), Positives = 103/179 (57%)

Query: 38  RLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97
           +L + R++ + G ++D   TL+  QL+ L  ++   +I+L+I+SPGG V + +AI D ++
Sbjct: 17  QLYEGRVLVLDGPLDDDNGTLLATQLIALATQDASTDIALWIHSPGGSVPSMLAIRDIIR 76

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
            I   +ST  MG A S G  LLS+G  G R ALP+AR+L+HQ S G  G A DIE  A D
Sbjct: 77  LIPCDVSTLAMGIAYSAGQFLLSSGTPGKRRALPHARVLMHQGSAGIGGTAVDIELQADD 136

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           +   +  +  +  ++ G+  E + +    D   +A EA D+G +D ++ S  +I  + +
Sbjct: 137 LRHTRDTVLGLIAEDTGQPVERIFEDSLHDRWYTAQEALDYGFIDAIVQSFDEIAPRDR 195


>gi|149198217|ref|ZP_01875264.1| ATP-dependent Clp protease proteolytic subunit [Lentisphaera
           araneosa HTCC2155]
 gi|149138819|gb|EDM27225.1| ATP-dependent Clp protease proteolytic subunit [Lentisphaera
           araneosa HTCC2155]
          Length = 196

 Score =  181 bits (461), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 72/184 (39%), Positives = 105/184 (57%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           E+  + +    +   +L  R + +  +I   ++  + +QL+ L   + ++ I +YINS G
Sbjct: 8   EEKKKEQDPGGMMKEMLDTRTIIIAEEISPELSRRVLSQLILLNKRSEKEPIYVYINSGG 67

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           G   +G  IYD +QF K P+ T C G  AS   L+  A +KG  F+LPN+R +LHQPS G
Sbjct: 68  GCADSGFTIYDMLQFFKAPVFTVCSGMCASAAILIFLAAKKGKNFSLPNSRFMLHQPSTG 127

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
             G ASDIE  A++I K + R N+I    C K  EEV K  DRD  MS +EA  +G+V K
Sbjct: 128 VRGTASDIEITAEEINKTRVRYNQIVADVCNKPLEEVSKDADRDFWMSPAEAKKYGMVSK 187

Query: 204 VLMS 207
           V+ S
Sbjct: 188 VITS 191


>gi|284029223|ref|YP_003379154.1| endopeptidase Clp [Kribbella flavida DSM 17836]
 gi|283808516|gb|ADB30355.1| Endopeptidase Clp [Kribbella flavida DSM 17836]
          Length = 206

 Score =  181 bits (461), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 70/189 (37%), Positives = 111/189 (58%), Gaps = 9/189 (4%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +PM  EQ            +LL+ R+V + GQ+ D   TLI  Q+L L AE+P+ +++L+
Sbjct: 7   MPMFGEQARL---------QLLRRRVVVLDGQLNDDNGTLIATQILTLAAEDPETDVALW 57

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           I+S GG V + +AI D M+ +   ++T  +G A S G  LLSAG KG R+ALP+AR+L+H
Sbjct: 58  IHSLGGSVPSMLAIRDVMRLVPCDVATVALGLACSAGQFLLSAGTKGKRYALPHARVLMH 117

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           Q S G  G A +IE  A D+  I+  +  +  ++ G+  E V +    DH  +A +A ++
Sbjct: 118 QGSAGIGGSAVEIEIQANDLRHIRDTVLRLVAEDTGQPLETVYEDSLHDHWYTAEQALEY 177

Query: 199 GVVDKVLMS 207
           G +D ++ S
Sbjct: 178 GFIDHLVGS 186


>gi|119953533|ref|YP_945742.1| ATP-dependent Clp protease proteolytic subunit [Borrelia turicatae
           91E135]
 gi|119862304|gb|AAX18072.1| ATP-dependent Clp protease proteolytic subunit [Borrelia turicatae
           91E135]
          Length = 196

 Score =  181 bits (459), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 71/174 (40%), Positives = 112/174 (64%)

Query: 40  LKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           LK R + +TG+I    + L   ++LFLEA +  K I +YI+S GG + AG AI++ ++F+
Sbjct: 20  LKSRSIVITGEINKDTSKLFQERILFLEASDCNKPIFVYIDSEGGDIDAGFAIFNMIRFV 79

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
           KP + T  +G  AS G+L+  A +   RF+LP+AR LLHQP  GF G A+DIE +  ++ 
Sbjct: 80  KPKVFTIGVGLVASAGALIFLAADSKSRFSLPHARYLLHQPLSGFKGVATDIEIYTNELN 139

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
           K+K  LN+I  K  G+  ++VEK  DRD  + +  A  +G+V K++ +R+++EE
Sbjct: 140 KVKSELNDIIAKETGQELDKVEKDTDRDFWLGSESAMKYGLVFKIVTTRLELEE 193


>gi|152986625|ref|YP_001347177.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           aeruginosa PA7]
 gi|150961783|gb|ABR83808.1| putative Clp protease [Pseudomonas aeruginosa PA7]
          Length = 201

 Score =  181 bits (459), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 68/185 (36%), Positives = 113/185 (61%), Gaps = 1/185 (0%)

Query: 27  NRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVV 86
             G     +    LK R VFV G++ + +A  +  QL  L +    + I +++NSPGG V
Sbjct: 13  PGGAIGARLMEFALKARKVFVIGEVNEKLARDVVQQLHILASI-SDEPIHMFVNSPGGHV 71

Query: 87  TAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG 146
            +G  I+D ++FI P +     G  AS G+L+ +A +K  R++LPN R LLHQPSGG  G
Sbjct: 72  ESGDMIFDAIRFITPKVIMIGSGSVASAGALIYAAADKENRYSLPNTRFLLHQPSGGIQG 131

Query: 147 QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
            AS+IE + ++IV++K RL+ I+ +  G+T E++    +RD  ++A EA  +G+V+++++
Sbjct: 132 PASNIEIYRREIVRMKERLDRIFAEATGQTAEKISADTERDFWLNAEEAQAYGLVNRIIV 191

Query: 207 SRIDI 211
           S  +I
Sbjct: 192 SEREI 196


>gi|84996251|ref|XP_952847.1| CLP protease [Theileria annulata strain Ankara]
 gi|65303845|emb|CAI76222.1| CLP protease, putative [Theileria annulata]
          Length = 271

 Score =  181 bits (459), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 78/216 (36%), Positives = 121/216 (56%), Gaps = 44/216 (20%)

Query: 36  YSRLLKE-----RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG- 89
           Y++LL E     RI+F++G++ D ++  I + +L +   +P+  I  YINSPGG VT+G 
Sbjct: 55  YNKLLDEFYIKNRIIFLSGELNDKVSFKIISSILRINENDPKLPIKFYINSPGGSVTSGN 114

Query: 90  -------------MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
                        +AI+D ++ +K P+ T  +GQAASMG+ LL++G KGMR+A+PN+RI+
Sbjct: 115 FITQFLHTLFFLGLAIFDILRSLKMPVETISLGQAASMGAFLLASGTKGMRYAMPNSRIM 174

Query: 137 LHQPSGG-------------------------FSGQASDIERHAQDIVKIKRRLNEIYVK 171
           +HQP G                            GQASDIE  A +I++I+  LN     
Sbjct: 175 IHQPLGTLRCSVTVLAPAAPIITNPPKGLYRGAHGQASDIEIQANEILQIREILNTNLSN 234

Query: 172 NCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
             GK+ EE+EK   RD+ M  SEA  +G++D ++ +
Sbjct: 235 FTGKSVEEIEKDCSRDNYMRPSEALQYGLIDHIINT 270


>gi|290474765|ref|YP_003467645.1| clpA-clpP ATP-dependent serine protease proteolytic subunit
           [Xenorhabdus bovienii SS-2004]
 gi|289174078|emb|CBJ80865.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
           [Xenorhabdus bovienii SS-2004]
          Length = 199

 Score =  181 bits (459), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 65/175 (37%), Positives = 107/175 (61%), Gaps = 1/175 (0%)

Query: 38  RLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97
           +LLK R + ++G+I   +A  +  QLL L+ E     I ++INS GG V AG  I+D ++
Sbjct: 26  KLLKSRCIMISGEINQALAEKVTTQLLVLQ-EINNDPIKIFINSQGGHVEAGDTIHDLIK 84

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
           FI+P +     G  AS G  +  A  K  R++LPN R ++HQP GG+ G+ASDIE  A++
Sbjct: 85  FIRPEVFIIGTGWVASAGITIFLAARKENRYSLPNTRFMIHQPLGGYQGKASDIEIEAKE 144

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
            + I+ R+N++     G++ E+VEK  DR++ M   +A ++G+V +++    DI+
Sbjct: 145 FLFIRSRINKLISDATGQSIEKVEKDTDRNYWMRPQQAIEYGIVGRIITKWDDIQ 199


>gi|115435898|ref|NP_001042707.1| Os01g0271400 [Oryza sativa Japonica Group]
 gi|113532238|dbj|BAF04621.1| Os01g0271400 [Oryza sativa Japonica Group]
          Length = 298

 Score =  180 bits (458), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 76/210 (36%), Positives = 121/210 (57%), Gaps = 9/210 (4%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
            DV   +VP  +  T   +   D+ S L K RIV++   +   +  L+ A+ L+L+ ++ 
Sbjct: 77  RDVVAMVVP-FLRGTAWQQPPPDLASFLYKNRIVYLGMCLVPSVTELMLAEFLYLQYDDA 135

Query: 72  QKEISLYINSPG--------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           +K I LYINS G        G  T   AIYD M+++K PI T C+G A    +LLL+AG 
Sbjct: 136 EKPIYLYINSTGTTKNGEKLGYETEAFAIYDAMRYVKVPIFTLCVGNAWGEAALLLAAGA 195

Query: 124 KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
           KG R ALP++ I++ QP G F GQA+D++   ++I  +K  + ++  ++ GK+ EE+ + 
Sbjct: 196 KGNRAALPSSTIMIKQPIGRFQGQATDVDIARKEIRNVKIEMIKLLSRHIGKSVEEIAQD 255

Query: 184 LDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
           + R    S SEA D+G++DKVL +    E+
Sbjct: 256 IKRPKYFSPSEAVDYGIIDKVLYNEKSQED 285


>gi|166201977|gb|ABY84444.1| ATP-dependent protease proteolytic subunit [Lychnis abyssinica]
          Length = 372

 Score =  180 bits (458), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 60/176 (34%), Positives = 108/176 (61%), Gaps = 1/176 (0%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           +   D+Y  L +ER +F+  +I+  +A  + A +L+L  ++P K++ L+INSPGG + +G
Sbjct: 192 DEWMDLYECLYEERYLFLGDEIKIELANKVSALMLYLSIQDPNKDMRLFINSPGGGLISG 251

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
           + ++D MQF++  + T C G AAS  SL+L  GE   R A  NAR+++HQP+  F    S
Sbjct: 252 IVLFDMMQFVRADVCTICYGLAASTASLVLLGGELTKRSAFANARVMIHQPASAFFKDKS 311

Query: 150 DI-ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            +    +++++K++ ++ +IY++   K    + + ++RD  MS  EA D G+VD +
Sbjct: 312 RLFAIDSRELLKLREQVTQIYIQRTKKPEWLIWEDMERDTFMSPEEALDHGIVDYI 367


>gi|302801676|ref|XP_002982594.1| hypothetical protein SELMODRAFT_116719 [Selaginella moellendorffii]
 gi|302823376|ref|XP_002993341.1| hypothetical protein SELMODRAFT_136938 [Selaginella moellendorffii]
 gi|300138850|gb|EFJ05603.1| hypothetical protein SELMODRAFT_136938 [Selaginella moellendorffii]
 gi|300149693|gb|EFJ16347.1| hypothetical protein SELMODRAFT_116719 [Selaginella moellendorffii]
          Length = 218

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 78/207 (37%), Positives = 121/207 (58%), Gaps = 11/207 (5%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  V      +   D+ S L   RIVF+   +   +  LI A+ L+L+  +P+K I +
Sbjct: 2   VIP-FVRGDASAQPPPDLPSYLFHNRIVFLGMSLVPAVTELIMAEFLYLQFVDPEKPIYM 60

Query: 78  YINSPG--------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           YINS G        G  T  +A+YDTMQ++KPPI T C+G A    +LLL+AG KG R A
Sbjct: 61  YINSTGTTKDGEKLGYETEALAMYDTMQYVKPPIFTLCVGNAWGEAALLLAAGAKGNRSA 120

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LP+  I+L +P   F GQA+DI+   +++  +K+ L E+  ++ G+  +++E+ + R   
Sbjct: 121 LPSTTIMLKEPIAQFRGQATDIDIARREVRNLKKDLVELLERHTGQPADKIEEDIRRPKY 180

Query: 190 MSASEACDWGVVDKVLMSRIDIEEKSK 216
            S  EA D+G++DKVL  R +  EKSK
Sbjct: 181 FSPDEAVDYGLIDKVL--RTEKGEKSK 205


>gi|115531963|ref|YP_784118.1| clp protease proteolytic subunit [Pelargonium x hortorum]
 gi|115531983|ref|YP_784138.1| clp protease proteolytic subunit [Pelargonium x hortorum]
 gi|122164258|sp|Q06FP3|CLPP_PELHO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|112382117|gb|ABI17310.1| clp protease proteolytic subunit [Pelargonium x hortorum]
 gi|112382137|gb|ABI17330.1| clp protease proteolytic subunit [Pelargonium x hortorum]
          Length = 219

 Score =  180 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 64/185 (34%), Positives = 107/185 (57%), Gaps = 1/185 (0%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
             D+Y+RL ++R +F+   +E+ +A  I   ++ L  E+P    +LYIN  GG++  G+A
Sbjct: 35  WVDLYNRLYRQRWLFLGKDLEEEVANNIVGLMIHLNIEDPFWTQTLYINCLGGLIIPGLA 94

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG-FSGQASD 150
           +YDT+ F++P + T C+G AASM S++L  G    R A PNAR+++HQP    F  + SD
Sbjct: 95  LYDTIGFVEPDVKTICLGIAASMASVVLVGGTVTERCAFPNARVMIHQPRAKEFDDRFSD 154

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           +       ++++  + +IY+    K    +   L+RD  MSA+EA  +G++D V     +
Sbjct: 155 LNLEGHLFLQLRNCVTQIYIHRTNKPAWVIIADLERDTFMSATEARTYGIIDGVYAFEEE 214

Query: 211 IEEKS 215
            EE S
Sbjct: 215 YEEWS 219


>gi|226531596|ref|NP_001140352.1| hypothetical protein LOC100272400 [Zea mays]
 gi|194699128|gb|ACF83648.1| unknown [Zea mays]
          Length = 289

 Score =  180 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 71/209 (33%), Positives = 120/209 (57%), Gaps = 9/209 (4%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           + + DV   +VP  +      +   D+ S L K RIV++   +   +  L+ A+ L+L+ 
Sbjct: 65  RGARDVVAMVVP-FLRGAAWEQPPPDLASFLYKNRIVYLGMCLVPSVTELMLAEFLYLQY 123

Query: 69  ENPQKEISLYINSPG--------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           ++ +K I +YINS G        G  T  +A+YD M+++K PI T C+G A    +LLL+
Sbjct: 124 DDAEKPIYMYINSTGTTKNGEKLGYETEALAVYDAMRYVKVPIFTLCVGNAWGEAALLLA 183

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG KG R ALP++ I++ QP G F GQA+D++   ++I  +K  + ++  ++ GK  EE+
Sbjct: 184 AGAKGNRAALPSSTIMIKQPIGRFQGQATDVDIARKEIRNVKIEMVKLLARHIGKPMEEI 243

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRI 209
            + + R    S SEA D+G++DKV+ +  
Sbjct: 244 ARDIRRPKYFSPSEAVDYGIIDKVIYNEK 272


>gi|237793935|ref|YP_002861487.1| Clp protease [Clostridium botulinum Ba4 str. 657]
 gi|229261558|gb|ACQ52591.1| Clp protease [Clostridium botulinum Ba4 str. 657]
          Length = 198

 Score =  180 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 63/178 (35%), Positives = 112/178 (62%), Gaps = 1/178 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +  +LLK R + ++G+I   +A  +  QLL LE E   + I ++INS GG V +   I+D
Sbjct: 21  VMEKLLKSRTIVISGEINQSLAEKVITQLLILE-EMGDEPIKIFINSQGGHVESADTIHD 79

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            ++FIKP +     G  AS G ++  A +K  R++LPN R ++HQP GGF+GQA+DI   
Sbjct: 80  MIKFIKPKVIMIGTGWVASAGIIIYLAADKKNRYSLPNTRYMIHQPLGGFNGQATDIGIE 139

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
           A++I+K++ R+N I  +   +  E++EK  DR++ +++ +A  +G+V K++ +  +++
Sbjct: 140 AEEILKVRNRINTIISEATNQPLEKIEKDTDRNYWLNSDDAMTYGIVGKIISTHPELD 197


>gi|297840997|ref|XP_002888380.1| clp protease proteolytic subunit [Arabidopsis lyrata subsp. lyrata]
 gi|297334221|gb|EFH64639.1| clp protease proteolytic subunit [Arabidopsis lyrata subsp. lyrata]
          Length = 172

 Score =  180 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 58/166 (34%), Positives = 100/166 (60%), Gaps = 7/166 (4%)

Query: 40  LKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
            ++R+ F+  +++  ++  + + +++L  E   K++ L+INSPGG V +GMAIYDTMQF+
Sbjct: 10  FRKRLFFLGQEVDTEISNQLISLMIYLSIEKDTKDLYLFINSPGGWVISGMAIYDTMQFV 69

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIERHAQDI 158
           +P + T CMG AAS+ S +L  G    R       +++HQP S  +  Q  +    A+++
Sbjct: 70  RPDVQTICMGLAASIASFILVGGAITKR------WVMIHQPASSFYEAQTGEFILEAEEL 123

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           +K++  +  +YV+  GK    V + ++RD  MSA+EA   G+VD V
Sbjct: 124 LKLRETMTRVYVQRTGKPIWVVSEDMERDVFMSATEAQAHGIVDLV 169


>gi|203284651|ref|YP_002222391.1| ATP-dependent Clp protease proteolytic component [Borrelia duttonii
           Ly]
 gi|203288184|ref|YP_002223199.1| ATP-dependent Clp protease proteolytic component [Borrelia
           recurrentis A1]
 gi|201084094|gb|ACH93685.1| ATP-dependent Clp protease proteolytic component [Borrelia duttonii
           Ly]
 gi|201085404|gb|ACH94978.1| ATP-dependent Clp protease proteolytic component [Borrelia
           recurrentis A1]
          Length = 196

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 68/174 (39%), Positives = 112/174 (64%)

Query: 40  LKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           LK R + +TG+I+   + L   ++LFLEA +  K I +YI+S GG + AG AI++ ++F+
Sbjct: 20  LKSRSIVITGEIDKDTSKLFQEKILFLEASDSTKPIFVYIDSEGGDIDAGFAIFNMIRFV 79

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
           +P + T  +G  AS G+L+  A +   RF+LP+AR LLHQP  GF G A+DIE +  ++ 
Sbjct: 80  RPKVFTIGVGLVASAGALIFLAADSKSRFSLPHARYLLHQPLSGFKGVATDIEIYTNELN 139

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
           K+K  LN+I  K  G+   +VEK  DRD  + +  A  +G+V +++ +R+++E+
Sbjct: 140 KVKSELNDIIAKETGQELNKVEKDTDRDFWLDSESAVKYGLVFQIITTRLELEK 193


>gi|302524703|ref|ZP_07277045.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sp. AA4]
 gi|302433598|gb|EFL05414.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sp. AA4]
          Length = 204

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 62/171 (36%), Positives = 103/171 (60%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
            R L +R++ + G ++D   T++  Q+L L  E+P K+I+L+I+SPGG V + +AI D M
Sbjct: 16  ERFLSQRVLVLDGVLDDDNGTVLATQMLSLAGEDPVKDIALWIHSPGGSVPSMLAIRDVM 75

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQ 156
           + +   +ST  +G A S G  LLSAG  G RFALP+ARIL+HQ S G  G A ++E  A 
Sbjct: 76  RLVPCDVSTLALGLACSAGQFLLSAGTPGKRFALPHARILMHQGSAGIGGSAVEVEVQAD 135

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           D+   +  +  +  ++ G+ ++ +      D   +A+EA D+G +D+++  
Sbjct: 136 DLRYTRDTVLGLTAQDTGQPFDRIFADSLHDRWYTAAEAKDYGFIDQIVDR 186


>gi|70954204|ref|XP_746160.1| ATP-dependent CLP protease [Plasmodium chabaudi chabaudi]
 gi|56526687|emb|CAH78759.1| ATP-dependent CLP protease, putative [Plasmodium chabaudi chabaudi]
          Length = 240

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 67/171 (39%), Positives = 106/171 (61%), Gaps = 1/171 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
             K+RI+++T +I    +  +  QLL+L+  N   +I +YINSPGG +  G+AI D   +
Sbjct: 60  FFKKRIIYLTDEINKKTSDELIKQLLYLDNINHN-DIKIYINSPGGSINEGLAILDIFNY 118

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           IK  I T   G  ASM S++L++G+KG R + PN RI++HQP G   G   DIE   ++I
Sbjct: 119 IKSDIQTISFGLVASMASVILASGKKGKRKSFPNCRIMIHQPLGNAFGHPHDIEIQTKEI 178

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           + +K+ L     K   K+ E +EK  DRD+ M+A EA ++G+VD+V+ +++
Sbjct: 179 LYLKKLLYYYLSKFTNKSEETIEKHSDRDYYMNALEAKEYGIVDEVVETKL 229


>gi|226470102|emb|CAX70332.1| ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit
           homolog [Schistosoma japonicum]
          Length = 179

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 83/131 (63%), Positives = 112/131 (85%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP+V+++T  GER+YDIYSRLLK+RI+ + G I D +A L+ AQLL+L++E+ +  I
Sbjct: 46  MSLVPIVLDKTTHGERAYDIYSRLLKDRIICLMGAISDEVAGLVVAQLLYLQSEDKKIPI 105

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG+AIYDTMQFIKPP++T+C+GQA+SMGSLLL+AG  G+RFALP++RI
Sbjct: 106 HIYINSPGGVVTAGLAIYDTMQFIKPPVATWCVGQASSMGSLLLAAGAPGLRFALPHSRI 165

Query: 136 LLHQPSGGFSG 146
           ++HQPSG   G
Sbjct: 166 MVHQPSGSAHG 176


>gi|269956965|ref|YP_003326754.1| endopeptidase Clp [Xylanimonas cellulosilytica DSM 15894]
 gi|269305646|gb|ACZ31196.1| Endopeptidase Clp [Xylanimonas cellulosilytica DSM 15894]
          Length = 208

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 70/173 (40%), Positives = 106/173 (61%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           L + R++ + G ++D   TL+  QL+ L  E+P  +I+L+I+SPGG V A +AI D ++ 
Sbjct: 18  LYERRVLVLDGVLDDDNGTLLATQLVTLAVEDPVADIALWIHSPGGSVPAMLAIRDLIRT 77

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           I   ++T  +G AAS G  LLSAG +G R ALP+ARILLHQ S G  G A DIE  A D+
Sbjct: 78  IPNDVATLALGFAASAGQFLLSAGTRGKRRALPHARILLHQGSAGIGGTAVDIELQADDL 137

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
             ++  +  +  ++ G+  E V +    DH  +A+EA ++G VD ++ S  DI
Sbjct: 138 RHMRDTVLGLIAQDTGQPPERVFEDSLHDHWFTAAEAQEYGFVDTIVGSFADI 190


>gi|168183296|ref|ZP_02617960.1| Clp protease [Clostridium botulinum Bf]
 gi|182673417|gb|EDT85378.1| Clp protease [Clostridium botulinum Bf]
          Length = 198

 Score =  179 bits (454), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 63/178 (35%), Positives = 111/178 (62%), Gaps = 1/178 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +  +LLK R + ++G+I   +A  +  QLL LE E   + I ++INS GG V +   I+D
Sbjct: 21  VMEKLLKSRTIVISGEINQSLAEKVITQLLILE-EMGDEPIKIFINSQGGHVESADTIHD 79

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            ++FIKP +     G  AS G  +  A +K  R++LPN R ++HQP GGF+GQA+DI   
Sbjct: 80  MIKFIKPKVIMIGTGWVASAGITIYLAADKKNRYSLPNTRYMIHQPLGGFNGQATDIGIE 139

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
           A++I+K++ R+N I  +   +  E++EK  DR++ +++ +A  +G+V K++ +  +++
Sbjct: 140 AEEILKVRNRINTIISEATNQPLEKIEKDTDRNYWLNSDDAMTYGIVGKIISTHPELD 197


>gi|322794945|gb|EFZ17835.1| hypothetical protein SINV_12459 [Solenopsis invicta]
          Length = 130

 Score =  178 bits (453), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 76/126 (60%), Positives = 105/126 (83%)

Query: 55  MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASM 114
           +A+ + AQLLFL++E+ +  I LYINSPGG VTAG+ IYDTMQ++ PPIST+C+GQA SM
Sbjct: 5   VASAVIAQLLFLQSESSKNPIHLYINSPGGSVTAGLGIYDTMQYVLPPISTWCVGQACSM 64

Query: 115 GSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCG 174
            SLLL+AG KGMR +LPNARI++HQPSGG  GQA+DI+  A +I+K+K+++NE+YVK+ G
Sbjct: 65  ASLLLAAGTKGMRHSLPNARIMIHQPSGGVQGQATDIQIQATEILKLKQQINELYVKHTG 124

Query: 175 KTYEEV 180
           +  +E+
Sbjct: 125 QNLDEI 130


>gi|187918699|ref|YP_001884175.1| ATP-dependent Clp protease proteolytic subunit [Borrelia hermsii
           DAH]
 gi|119861547|gb|AAX17342.1| ATP-dependent Clp protease [Borrelia hermsii DAH]
          Length = 196

 Score =  178 bits (453), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 70/174 (40%), Positives = 111/174 (63%)

Query: 40  LKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           LK R + +TG+I    + L   ++LFLEA +  K I +YI+S GG + AG AI++ ++F+
Sbjct: 20  LKSRSIVITGEINKDTSKLFQEKILFLEASDCDKPIFVYIDSEGGDIDAGFAIFNMIRFV 79

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
           KP + T  +G  AS G+L+  A +   RF+LP+AR LLHQP  GF G A+DIE +  ++ 
Sbjct: 80  KPKVFTIGVGLVASAGALIFLAADSNSRFSLPHARYLLHQPLSGFKGVATDIEIYTNELN 139

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
           K+K  LN+I  K  G+   +VEK  DRD  + +  A  +G+V K++ +R+++E+
Sbjct: 140 KVKSELNDIVAKETGQELNKVEKDTDRDFWLDSESAMQYGLVFKIVTTRLELEK 193


>gi|260905350|ref|ZP_05913672.1| putative Clp protease proteolytic subunit [Brevibacterium linens
           BL2]
          Length = 193

 Score =  178 bits (453), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 78/188 (41%), Positives = 118/188 (62%), Gaps = 1/188 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P VV+++  GE+  D+YS LL  RI+++   I+D +A  I AQLL LEA + +  I LY
Sbjct: 6   IPNVVDRSGGGEKIVDVYSHLLGNRIIYLGVPIDDGVANTIIAQLLHLEASSRELPIQLY 65

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG +TA  AIYD M  I  P++T C+GQAA+  ++LL+AGE G R  L +AR +L 
Sbjct: 66  INSPGGSLTAMTAIYDAMHHIGAPVATICVGQAAADAAVLLAAGEPGQRSMLEHARAVLR 125

Query: 139 QPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP      G   D+   A +I + +R +  +  K  G++ ++    LDRD +++A  A D
Sbjct: 126 QPHAEGARGAIPDLIVAADEIARQRRDVEAMLAKGTGRSVDQTHADLDRDLVLNAQAARD 185

Query: 198 WGVVDKVL 205
           +G+VD++L
Sbjct: 186 FGLVDQIL 193


>gi|118162102|gb|ABK64224.1| ClpP [Listeria monocytogenes]
          Length = 139

 Score =  178 bits (453), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 81/139 (58%), Positives = 107/139 (76%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IYSRLLK+RI+ +   I+D++A  I +QLLFL+A++P+K+I LYINSPGG ++AGMAIYD
Sbjct: 1   IYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDIFLYINSPGGSISAGMAIYD 60

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM F+K  + T  MG AASMGS LL+AG  G RFALPNA+I++HQP GG  GQA++IE  
Sbjct: 61  TMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAQIMIHQPLGGAQGQATEIEIA 120

Query: 155 AQDIVKIKRRLNEIYVKNC 173
           A+ I+KIK R+N I  +  
Sbjct: 121 ARHILKIKERMNTIMAEKT 139


>gi|56808248|ref|ZP_00366019.1| COG0740: Protease subunit of ATP-dependent Clp proteases
           [Streptococcus pyogenes M49 591]
          Length = 159

 Score =  178 bits (453), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 70/155 (45%), Positives = 105/155 (67%), Gaps = 2/155 (1%)

Query: 55  MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASM 114
           MA  + AQLLFL+A++  K+I LY+N+PGG V+AG+AI DTM FIK  + T  MG AASM
Sbjct: 1   MANSVIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASM 60

Query: 115 GSLLLSAGEKGMRFALPNARILLHQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKN 172
           G+++ S+G KG RF LPNA  ++HQP    G   Q +D+   A+ ++K + RL +I  +N
Sbjct: 61  GTVIASSGTKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRHRLEKILAQN 120

Query: 173 CGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
            GKT +++ K  +RD+ MSA E   +G +D+++ +
Sbjct: 121 AGKTIKQIHKDAERDYWMSAEETLAYGFIDEIMEN 155


>gi|326495296|dbj|BAJ85744.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 282

 Score =  178 bits (453), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 73/212 (34%), Positives = 121/212 (57%), Gaps = 9/212 (4%)

Query: 4   EGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQL 63
           +    + + DV   ++P  +  T   +   D+ S L K RIV++   +   +  L+ A+ 
Sbjct: 54  DPAGGRGARDVVAMVIP-FLRGTAFEQPPPDLASFLYKNRIVYLGMCLVPSVTELMLAEF 112

Query: 64  LFLEAENPQKEISLYINSPG--------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMG 115
           L+L+ E+ +K I +YINS G        G  T   A+YD M+++K PI T C+G A    
Sbjct: 113 LYLQYEDAEKPIYMYINSTGTTKNGEKLGYETEAFAVYDAMRYVKIPIFTLCIGNAWGEA 172

Query: 116 SLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK 175
           +LLL+AG KG R ALP++ I++ QP G F GQA+D++   ++I  +K  + ++  ++ GK
Sbjct: 173 ALLLAAGAKGNRAALPSSTIMMKQPIGRFQGQATDVDIARKEIRNVKIEMVKLLSRHIGK 232

Query: 176 TYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
             EE+ + + R    S SEA D+G++DKVL +
Sbjct: 233 PMEEIARDIRRPKYFSPSEAVDYGIIDKVLHN 264


>gi|219673992|ref|YP_002456477.1| clp protease proteolytic subunit [Trifolium subterraneum]
 gi|193788961|gb|ACF20557.1| clp protease proteolytic subunit [Trifolium subterraneum]
          Length = 199

 Score =  178 bits (453), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 63/187 (33%), Positives = 111/187 (59%), Gaps = 2/187 (1%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP ++ + +      D+Y  L +ER++F+  ++   ++  +   +++L  ++  K++ L+
Sbjct: 8   VPYLMPEEDE-ASWVDLYHLLYEERLLFLGQEVNSEISNQLNGLMVYLSLQDKTKDLYLF 66

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG + +GMA++DTMQF+K  + T C+G A SM SLLL  GE   R A  +AR+++H
Sbjct: 67  INSPGGELMSGMAMFDTMQFVKAEVQTVCVGIAVSMASLLLLGGEITKRLAFSHARVMMH 126

Query: 139 QPSGGFSGQAS-DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           +P+  F    + +    A +++K+   +  IYV+  GK   ++   + RD  MSA EA  
Sbjct: 127 EPASVFEDDKTGECMLEADELLKMYIGIINIYVQRTGKPVWQIAVDIKRDIFMSAEEAQA 186

Query: 198 WGVVDKV 204
           +G+VD V
Sbjct: 187 YGIVDMV 193


>gi|163758550|ref|ZP_02165637.1| ATP-dependent Clp protease proteolytic subunit [Hoeflea
           phototrophica DFL-43]
 gi|162283840|gb|EDQ34124.1| ATP-dependent Clp protease proteolytic subunit [Hoeflea
           phototrophica DFL-43]
          Length = 192

 Score =  178 bits (452), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 72/173 (41%), Positives = 105/173 (60%), Gaps = 1/173 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           L K R +F+ G I   +A  +CAQL    A     +I +++NSPGG V +G +I+D + F
Sbjct: 21  LFKSRSIFIYGGITQELAHKVCAQLAA-LAAASDDDIRIFVNSPGGHVESGDSIHDMIGF 79

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           IKP +     G  AS G+L+  +  K  R  LPN R LLHQPSGG  G  SDIE  A++I
Sbjct: 80  IKPKVWIIGTGWVASAGALIYVSVPKEQRLCLPNTRFLLHQPSGGTRGMVSDIEIQAREI 139

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           +K+  RLN I+ K  G+  E++    DRD+ +SA EA D+G+V K++ ++ +I
Sbjct: 140 IKMNARLNAIFAKATGQKIEKIAADTDRDYWLSAEEAKDYGLVGKIITNQSEI 192


>gi|30171739|gb|AAP20403.1| ClpP [Listeria monocytogenes]
 gi|30171741|gb|AAP20404.1| ClpP [Listeria monocytogenes]
 gi|30171743|gb|AAP20405.1| ClpP [Listeria monocytogenes]
 gi|30171761|gb|AAP20414.1| ClpP [Listeria monocytogenes]
 gi|30171763|gb|AAP20415.1| ClpP [Listeria monocytogenes]
 gi|30171765|gb|AAP20416.1| ClpP [Listeria monocytogenes]
 gi|118162104|gb|ABK64225.1| ClpP [Listeria monocytogenes]
 gi|118162108|gb|ABK64227.1| ClpP [Listeria monocytogenes]
 gi|118162110|gb|ABK64228.1| ClpP [Listeria monocytogenes]
          Length = 139

 Score =  178 bits (452), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 81/139 (58%), Positives = 106/139 (76%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IYSRLLK+RI+ +   I+D++A  I +QLLFL+A++P+K+I LYINSPGG ++AGMAIYD
Sbjct: 1   IYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDIFLYINSPGGSISAGMAIYD 60

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM F+K  + T  MG AASMGS LL+AG  G RFALPNA I++HQP GG  GQA++IE  
Sbjct: 61  TMNFVKADVQTIGMGMAASMGSFLLTAGASGKRFALPNAEIMIHQPLGGAQGQATEIEIA 120

Query: 155 AQDIVKIKRRLNEIYVKNC 173
           A+ I+KIK R+N I  +  
Sbjct: 121 ARHILKIKERMNTIMAEKT 139


>gi|30171711|gb|AAP20389.1| ClpP [Listeria monocytogenes]
 gi|30171713|gb|AAP20390.1| ClpP [Listeria monocytogenes]
 gi|30171715|gb|AAP20391.1| ClpP [Listeria monocytogenes]
 gi|30171717|gb|AAP20392.1| ClpP [Listeria monocytogenes]
 gi|30171719|gb|AAP20393.1| ClpP [Listeria monocytogenes]
 gi|30171721|gb|AAP20394.1| ClpP [Listeria monocytogenes]
 gi|30171725|gb|AAP20396.1| ClpP [Listeria monocytogenes]
 gi|30171727|gb|AAP20397.1| ClpP [Listeria monocytogenes]
 gi|30171729|gb|AAP20398.1| ClpP [Listeria monocytogenes]
 gi|30171731|gb|AAP20399.1| ClpP [Listeria monocytogenes]
 gi|30171733|gb|AAP20400.1| ClpP [Listeria monocytogenes]
 gi|30171737|gb|AAP20402.1| ClpP [Listeria monocytogenes]
 gi|30171745|gb|AAP20406.1| ClpP [Listeria monocytogenes]
 gi|30171747|gb|AAP20407.1| ClpP [Listeria monocytogenes]
 gi|30171749|gb|AAP20408.1| ClpP [Listeria monocytogenes]
 gi|30171753|gb|AAP20410.1| ClpP [Listeria monocytogenes]
 gi|30171755|gb|AAP20411.1| ClpP [Listeria monocytogenes]
 gi|30171759|gb|AAP20413.1| ClpP [Listeria monocytogenes]
 gi|71480602|gb|AAZ32226.1| ClpP [Listeria monocytogenes]
 gi|118162050|gb|ABK64198.1| ClpP [Listeria monocytogenes]
 gi|118162052|gb|ABK64199.1| ClpP [Listeria monocytogenes]
 gi|118162054|gb|ABK64200.1| ClpP [Listeria monocytogenes]
 gi|118162056|gb|ABK64201.1| ClpP [Listeria monocytogenes]
 gi|118162058|gb|ABK64202.1| ClpP [Listeria monocytogenes]
 gi|118162060|gb|ABK64203.1| ClpP [Listeria monocytogenes]
 gi|118162062|gb|ABK64204.1| ClpP [Listeria monocytogenes]
 gi|118162064|gb|ABK64205.1| ClpP [Listeria monocytogenes]
 gi|118162066|gb|ABK64206.1| ClpP [Listeria monocytogenes]
 gi|118162068|gb|ABK64207.1| ClpP [Listeria monocytogenes]
 gi|118162070|gb|ABK64208.1| ClpP [Listeria monocytogenes]
 gi|118162072|gb|ABK64209.1| ClpP [Listeria monocytogenes]
 gi|118162074|gb|ABK64210.1| ClpP [Listeria monocytogenes]
 gi|118162076|gb|ABK64211.1| ClpP [Listeria monocytogenes]
 gi|118162078|gb|ABK64212.1| ClpP [Listeria monocytogenes]
 gi|118162080|gb|ABK64213.1| ClpP [Listeria monocytogenes]
 gi|118162082|gb|ABK64214.1| ClpP [Listeria monocytogenes]
 gi|118162084|gb|ABK64215.1| ClpP [Listeria monocytogenes]
 gi|118162086|gb|ABK64216.1| ClpP [Listeria monocytogenes]
 gi|118162088|gb|ABK64217.1| ClpP [Listeria monocytogenes]
 gi|118162090|gb|ABK64218.1| ClpP [Listeria monocytogenes]
 gi|118162092|gb|ABK64219.1| ClpP [Listeria monocytogenes]
 gi|118162094|gb|ABK64220.1| ClpP [Listeria monocytogenes]
 gi|118162096|gb|ABK64221.1| ClpP [Listeria monocytogenes]
 gi|118162098|gb|ABK64222.1| ClpP [Listeria monocytogenes]
 gi|118162100|gb|ABK64223.1| ClpP [Listeria monocytogenes]
 gi|118162106|gb|ABK64226.1| ClpP [Listeria monocytogenes]
 gi|118162112|gb|ABK64229.1| ClpP [Listeria monocytogenes]
 gi|118162114|gb|ABK64230.1| ClpP [Listeria monocytogenes]
 gi|118162116|gb|ABK64231.1| ClpP [Listeria monocytogenes]
 gi|150372482|dbj|BAF66030.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372484|dbj|BAF66031.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372486|dbj|BAF66032.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372488|dbj|BAF66033.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372490|dbj|BAF66034.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372492|dbj|BAF66035.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372494|dbj|BAF66036.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372496|dbj|BAF66037.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372498|dbj|BAF66038.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372500|dbj|BAF66039.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372502|dbj|BAF66040.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372504|dbj|BAF66041.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372506|dbj|BAF66042.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372508|dbj|BAF66043.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372510|dbj|BAF66044.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372512|dbj|BAF66045.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372514|dbj|BAF66046.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372516|dbj|BAF66047.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372518|dbj|BAF66048.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372520|dbj|BAF66049.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372522|dbj|BAF66050.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372524|dbj|BAF66051.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372526|dbj|BAF66052.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372528|dbj|BAF66053.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372530|dbj|BAF66054.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372532|dbj|BAF66055.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372534|dbj|BAF66056.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372538|dbj|BAF66058.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372540|dbj|BAF66059.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372542|dbj|BAF66060.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372544|dbj|BAF66061.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372546|dbj|BAF66062.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372548|dbj|BAF66063.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372550|dbj|BAF66064.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372552|dbj|BAF66065.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372554|dbj|BAF66066.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372556|dbj|BAF66067.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372558|dbj|BAF66068.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372560|dbj|BAF66069.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372562|dbj|BAF66070.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372564|dbj|BAF66071.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372566|dbj|BAF66072.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372568|dbj|BAF66073.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372570|dbj|BAF66074.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372572|dbj|BAF66075.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372574|dbj|BAF66076.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372576|dbj|BAF66077.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372578|dbj|BAF66078.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372580|dbj|BAF66079.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372582|dbj|BAF66080.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372584|dbj|BAF66081.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372586|dbj|BAF66082.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372588|dbj|BAF66083.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372590|dbj|BAF66084.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372592|dbj|BAF66085.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372594|dbj|BAF66086.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372596|dbj|BAF66087.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|150372598|dbj|BAF66088.1| Clp protease proteolytic subunit [Listeria monocytogenes]
 gi|189484999|gb|AAP20409.2| ClpP [Listeria monocytogenes]
          Length = 139

 Score =  178 bits (452), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 81/139 (58%), Positives = 106/139 (76%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IYSRLLK+RI+ +   I+D++A  I +QLLFL+A++P+K+I LYINSPGG ++AGMAIYD
Sbjct: 1   IYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDIFLYINSPGGSISAGMAIYD 60

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM F+K  + T  MG AASMGS LL+AG  G RFALPNA I++HQP GG  GQA++IE  
Sbjct: 61  TMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEIMIHQPLGGAQGQATEIEIA 120

Query: 155 AQDIVKIKRRLNEIYVKNC 173
           A+ I+KIK R+N I  +  
Sbjct: 121 ARHILKIKERMNTIMAEKT 139


>gi|30171723|gb|AAP20395.1| ClpP [Listeria monocytogenes]
 gi|30171757|gb|AAP20412.1| ClpP [Listeria monocytogenes]
          Length = 139

 Score =  178 bits (452), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 80/139 (57%), Positives = 106/139 (76%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IYSRLLK+RI+ +   I++++A  I +QLLFL+A++P+K+I LYINSPGG ++AGMAIYD
Sbjct: 1   IYSRLLKDRIIMLGSAIDENVANSIVSQLLFLDAQDPEKDIFLYINSPGGSISAGMAIYD 60

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM F+K  + T  MG AASMGS LL+AG  G RFALPNA I++HQP GG  GQA++IE  
Sbjct: 61  TMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEIMIHQPLGGAQGQATEIEIA 120

Query: 155 AQDIVKIKRRLNEIYVKNC 173
           A+ I+KIK R+N I  +  
Sbjct: 121 ARHILKIKERMNTIMAEKT 139


>gi|302835159|ref|XP_002949141.1| hypothetical protein VOLCADRAFT_120717 [Volvox carteri f.
           nagariensis]
 gi|300265443|gb|EFJ49634.1| hypothetical protein VOLCADRAFT_120717 [Volvox carteri f.
           nagariensis]
          Length = 288

 Score =  178 bits (451), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 73/211 (34%), Positives = 115/211 (54%), Gaps = 5/211 (2%)

Query: 2   SFEGCAKKDSEDVFLGLVPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLI 59
           SF     +      + + P +  Q  +GE     D+Y  LL  RI+FV G I D MAT I
Sbjct: 50  SFRNVEARGIRRSPV-VTPDI--QIGQGEDAIQMDLYRYLLTNRIIFVGGYINDKMATQI 106

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
              LL LEA +  ++I LYINSPGG   + + + D +Q IKP + T  +G   S  SLLL
Sbjct: 107 VGSLLALEAIDENEDIRLYINSPGGQPYSVLGVVDAIQSIKPDVQTVALGACYSYSSLLL 166

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
           ++G KG R+A+ N RI++ QP GG  G    I++  +++  I +  +  Y++  G + + 
Sbjct: 167 ASGTKGKRYAMKNTRIMMTQPMGGSQGDIYQIKKTVEELNAIYQIFSRYYMRFTGMSQDA 226

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           VE+   RD+ M+  +A   G++D ++  + D
Sbjct: 227 VEQATCRDYFMTPEQAKMEGLIDDIIRGKGD 257


>gi|30171735|gb|AAP20401.1| ClpP [Listeria monocytogenes]
          Length = 139

 Score =  178 bits (451), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 80/139 (57%), Positives = 105/139 (75%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IYSRLLK+RI+ +   I+D++A  I +QL FL+A++P+K+I LYINSPGG ++AGMAIYD
Sbjct: 1   IYSRLLKDRIIMLGSAIDDNVANSIVSQLFFLDAQDPEKDIFLYINSPGGSISAGMAIYD 60

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM F+K  + T  MG AASMGS LL+AG  G RFALPNA I++HQP GG  GQA++IE  
Sbjct: 61  TMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEIMIHQPLGGAQGQATEIEIA 120

Query: 155 AQDIVKIKRRLNEIYVKNC 173
           A+ I+KIK R+N I  +  
Sbjct: 121 ARHILKIKERMNTIMAEKT 139


>gi|254425265|ref|ZP_05038983.1| Clp protease [Synechococcus sp. PCC 7335]
 gi|196192754|gb|EDX87718.1| Clp protease [Synechococcus sp. PCC 7335]
          Length = 218

 Score =  178 bits (451), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 67/203 (33%), Positives = 119/203 (58%), Gaps = 15/203 (7%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP  +  + R  +  +I++R+ +ERI+F+   + D +A  + + LL+L++E+  K I LY
Sbjct: 3   VPYNLPGS-RSWQWVNIFTRMSQERILFLNSPLTDGVANSLVSALLYLDSEDQSKPIYLY 61

Query: 79  INSPGG--------------VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           INS G                + AG+A+YDT+  IK  + T CMG A  M ++LL+AG K
Sbjct: 62  INSLGDPVMSGQADESAGMISIRAGLAVYDTIAHIKSEVLTICMGTAYGMAAVLLAAGAK 121

Query: 125 GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
           G R ALP+  I L  P+    GQA+DI   A +++  ++ + +I   + G++ E++ K +
Sbjct: 122 GKRAALPHTSIALTHPTTLTRGQATDINLEATEVLAKRKLIQQILANSTGQSAEKIAKDM 181

Query: 185 DRDHIMSASEACDWGVVDKVLMS 207
           +R   +S +EA ++G++D+V+ +
Sbjct: 182 ERMFYLSPTEAKEYGLIDRVIEN 204


>gi|290489456|gb|ADD31112.1| clp protease proteolytic subunit protein [Bulnesia arborea]
          Length = 196

 Score =  177 bits (449), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 60/189 (31%), Positives = 101/189 (53%), Gaps = 3/189 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V       E     D+Y+RL ++R++F+  ++ D ++  +   +++L  E+      
Sbjct: 5   VPKVPFLIPGDEDASWVDLYNRLYRQRLLFLGQEVNDEISNQLIGLMVYLSLEDSTLNQY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+INSPGG++  G+ I  TM  + P + T CMG A S G  +L  GE   R A P+AR++
Sbjct: 65  LFINSPGGLILPGIGIVSTMSTLVPEVQTICMGSAISTGCFILVGGEITKRMAFPHARVM 124

Query: 137 LHQPSGGF-SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           LHQP+  F      D+    ++I+ +   +   YV   GK    + + + +D  MSA EA
Sbjct: 125 LHQPASSFLEAPMRDMILEGEEILNLYEIVTTTYVIRTGKPLWVIVEDMKKDVFMSAEEA 184

Query: 196 CDWGVVDKV 204
            ++G+VD +
Sbjct: 185 KNYGLVDLI 193


>gi|11467326|ref|NP_043183.1| ATP-dependent Clp protease proteolytic subunit [Cyanophora
           paradoxa]
 gi|1352091|sp|P48254|CLPPL_CYAPA RecName: Full=Putative ATP-dependent Clp protease proteolytic
           subunit-like; AltName: Full=Endopeptidase Clp-like
 gi|1016127|gb|AAA81214.1| subunit of ClpP protease [Cyanophora paradoxa]
          Length = 199

 Score =  176 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 67/173 (38%), Positives = 101/173 (58%), Gaps = 2/173 (1%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I + LL ER++F+    +    ++    LL+LE+EN QK +S YINS          +YD
Sbjct: 22  INNALLNERVIFLCNYEDATDESIYIGMLLYLESENSQKPVSFYINSSITFPNLCFGLYD 81

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS--GGFSGQASDIE 152
           T+  IK  I T C+G A  M SL+L+AG KG RFALPN+RI++ +P   GG +GQA+D+ 
Sbjct: 82  TILQIKADIVTICLGLAGGMSSLILAAGTKGQRFALPNSRIMMQEPLIDGGVNGQATDLA 141

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
             A++++  K  L  +Y +  G+    +EK L R    SA  A ++G +D +L
Sbjct: 142 IEAKELMDTKEILINLYHERTGQPKPVIEKDLQRPRYFSAQAAKEYGFIDSLL 194


>gi|46110353|ref|XP_382234.1| hypothetical protein FG02058.1 [Gibberella zeae PH-1]
          Length = 157

 Score =  176 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 69/147 (46%), Positives = 98/147 (66%), Gaps = 7/147 (4%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VT+GMAIYDTM +IK P+ST C+G AASM ++LL+ GE G RF+LP++ I+
Sbjct: 1   MYINSPGGSVTSGMAIYDTMTYIKSPVSTVCIGGAASMAAILLAGGEAGKRFSLPHSSIM 60

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK-------TYEEVEKTLDRDHI 189
           +HQP GG  GQASDI  +A  I K + + N+I   +  K       + EE+   ++RD  
Sbjct: 61  IHQPLGGTRGQASDIMIYANQIQKTREQSNKIMQYHLNKAKGHDKYSLEEINDLMERDKY 120

Query: 190 MSASEACDWGVVDKVLMSRIDIEEKSK 216
           ++  EA D GV+D++L  R + E + K
Sbjct: 121 LTPEEALDLGVIDEILTKRPETESEKK 147


>gi|150372536|dbj|BAF66057.1| Clp protease proteolytic subunit [Listeria monocytogenes]
          Length = 139

 Score =  176 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 81/139 (58%), Positives = 106/139 (76%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IYSRLLK+RI+ +   I+D++A  I +QLLFL+A++P+K+I LYINSPGG ++AGMAIYD
Sbjct: 1   IYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDIFLYINSPGGSISAGMAIYD 60

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           TM F+K  + T  MG AASMGS LL+AG  G RFALPNA I++HQP GG  GQA++IE  
Sbjct: 61  TMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEIMIHQPLGGAQGQATEIEIA 120

Query: 155 AQDIVKIKRRLNEIYVKNC 173
           A+ I+KIK R+N I  +  
Sbjct: 121 ARHILKIKERMNTIKAEKT 139


>gi|219113429|ref|XP_002186298.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583148|gb|ACI65768.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 199

 Score =  176 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 63/177 (35%), Positives = 98/177 (55%), Gaps = 9/177 (5%)

Query: 42  ERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVV---------TAGMAI 92
            RIV++   +   +  L+ A+LL+L  E+  + I++YINS G            T   AI
Sbjct: 12  NRIVYIGMPLVPAVTELVIAELLYLNYESTTEPITMYINSSGTSTANGQAVGFETEAFAI 71

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIE 152
            D M++++PP+ T  +GQA    ++LLS G++G RFALPNA ILL+QP     GQASDI 
Sbjct: 72  ADVMKYVRPPVHTVALGQAFGAAAMLLSQGKRGSRFALPNATILLNQPKSQARGQASDIA 131

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
             A+++   +R   E+    CGK  E V +   R   +   EA ++G++D V+ +  
Sbjct: 132 IKAREVAHNRRTTCELIASACGKPVETVMEDCSRVKYLQPHEAVEYGLIDAVVENEA 188


>gi|262201604|ref|YP_003272812.1| endopeptidase Clp [Gordonia bronchialis DSM 43247]
 gi|262084951|gb|ACY20919.1| Endopeptidase Clp [Gordonia bronchialis DSM 43247]
          Length = 231

 Score =  176 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 67/165 (40%), Positives = 96/165 (58%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           L  +RI+ +   ++D + + +CAQ++ L  E+P  +I+L+INSPGG V A +AI DTM+ 
Sbjct: 45  LRTQRILLLDTALDDEIGSELCAQMVLLSVEDPVADIALWINSPGGSVPAMLAIMDTMRL 104

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           I   I T  +G A S G  LL  G  G RF LP+A++LLHQ S G  G A DIE  A D+
Sbjct: 105 IPNDIRTVNLGMAYSAGQFLLCCGTAGKRFILPHAKVLLHQGSAGIGGYAPDIELQADDL 164

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
             ++  +  I  +  G+  E V     RDH+ +A EA  +G VD 
Sbjct: 165 RHVRDTVLGIIAEQTGQPPERVFDDSLRDHVFTADEAIAYGFVDH 209


>gi|154250462|ref|YP_001411286.1| endopeptidase Clp [Parvibaculum lavamentivorans DS-1]
 gi|154154412|gb|ABS61629.1| Endopeptidase Clp [Parvibaculum lavamentivorans DS-1]
          Length = 199

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 68/184 (36%), Positives = 114/184 (61%), Gaps = 1/184 (0%)

Query: 28  RGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVT 87
           +G+    +   L K R V VTG+I D  A  +  +LL +  E+    I++ ++SPGG V 
Sbjct: 16  KGQFMPLVEHGLFKSRTVLVTGEINDRQARAVSERLLAMAGESDD-PITVIVSSPGGHVE 74

Query: 88  AGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQ 147
           +G  I+D +++IKP +     G  AS G+L+  A ++  R+ LPN R LLH+P GG  G 
Sbjct: 75  SGDMIHDMIKYIKPRVRVLGTGWVASAGALIYVAADREDRYCLPNTRFLLHEPRGGVGGS 134

Query: 148 ASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A++I+  A++++K++ RLN+I+ +  G+  E++ K  +RDH M+A EA ++GVV K++ S
Sbjct: 135 ATEIDIQAREVLKMRERLNKIFAEATGQPIEKIVKDTNRDHWMNAEEAKEYGVVGKIIRS 194

Query: 208 RIDI 211
             +I
Sbjct: 195 AAEI 198


>gi|332111751|gb|EGJ11731.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rubrivivax
           benzoatilyticus JA2]
          Length = 201

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 63/172 (36%), Positives = 104/172 (60%), Gaps = 1/172 (0%)

Query: 40  LKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
            K R V V G+I+D +A   C +L+ L +++    I + I+SPGG V +G AI+D ++FI
Sbjct: 30  FKSRFVLVFGEIDDKLARATCERLIAL-SQDSDAPIHMLISSPGGHVESGDAIHDMIRFI 88

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
             P++T   G  AS G+ +  A  K  R  LPN R ++HQP+GG  G+A+DI   A++I+
Sbjct: 89  NAPVTTIGSGWVASAGTHIYLAAPKERRVCLPNTRFMIHQPAGGAGGRATDIAIQAKEII 148

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           K + R+  +     G+  E+V   ++RD+ MSA EA  +G+V +V+  + ++
Sbjct: 149 KTRERIARVVATQTGQKIEKVMADMERDYWMSADEAIAYGIVSRVIERQSEL 200


>gi|302835744|ref|XP_002949433.1| hypothetical protein VOLCADRAFT_89887 [Volvox carteri f.
           nagariensis]
 gi|300265260|gb|EFJ49452.1| hypothetical protein VOLCADRAFT_89887 [Volvox carteri f.
           nagariensis]
          Length = 269

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 63/207 (30%), Positives = 117/207 (56%), Gaps = 4/207 (1%)

Query: 4   EGCAKKDSEDVFLGLVPMVVEQTNRGE--RSYDIYSRLLKERIVFVTGQIEDHMATLICA 61
            G  K+    +    VP V+ +    +     D++     +++VF+   I + +A  + A
Sbjct: 41  SGAPKRKVTTMMPVSVPKVLVRPPGQKQMEWVDLWEAYTYQKVVFIKEAITEEVANNMIA 100

Query: 62  QLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSA 121
             L+L++    K I  ++N PGG V   +A+YDTMQ+++   +T C G    MG  LL+ 
Sbjct: 101 LTLYLDSL-DNKRIYYWLNCPGGEVVPTLALYDTMQYVRSKTATVCYGLCLGMGGFLLTT 159

Query: 122 G-EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           G EKG RFA+P++ +++H PSG   GQAS++   ++++V+++  L+ +   + G+ Y+ V
Sbjct: 160 GGEKGYRFAMPHSILMMHHPSGASRGQASEMHIESRELVRMRDYLSLLVSNSTGQPYDRV 219

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMS 207
            + L R+  M   +A ++G++DKVL +
Sbjct: 220 IRELSRNKWMDPKQAIEYGMIDKVLTT 246


>gi|111115588|ref|YP_710206.1| ATP-dependent Clp protease proteolytic subunit [Borrelia afzelii
           PKo]
 gi|216263563|ref|ZP_03435558.1| Clp protease [Borrelia afzelii ACA-1]
 gi|110890862|gb|ABH02030.1| ATP-dependent Clp protease proteolytic component [Borrelia afzelii
           PKo]
 gi|215980407|gb|EEC21228.1| Clp protease [Borrelia afzelii ACA-1]
          Length = 198

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 67/175 (38%), Positives = 110/175 (62%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           +LK R + + G+I   ++ L   ++L LE+ + +K I +YI+S GG + AG AI++ ++F
Sbjct: 20  ILKSRSIVIAGEITKDVSRLFQEKILLLESLDFKKPIFVYIDSEGGDIDAGFAIFNMIRF 79

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           +KP + T  +G  AS  +L+  A +   RF+LP AR LLHQP  GF G A+DIE +A ++
Sbjct: 80  VKPKVFTVGVGLVASAAALIFLAAKLENRFSLPFARYLLHQPLSGFKGVATDIEIYANEL 139

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
            K+K+ LN I  K  G+   ++EK  DRD  + +S A  +G+V +V+ ++  +EE
Sbjct: 140 NKLKKELNNIISKETGQNISKIEKDTDRDFWLDSSAAKKYGLVFEVVETKYQLEE 194


>gi|302897551|ref|XP_003047654.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256728585|gb|EEU41941.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 157

 Score =  176 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 71/147 (48%), Positives = 99/147 (67%), Gaps = 7/147 (4%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VT+GMAIYDTM +IK P+ST C+G AASM ++LL+ GE G RF+LP++ I+
Sbjct: 1   MYINSPGGSVTSGMAIYDTMSYIKSPVSTVCVGGAASMAAILLAGGEAGKRFSLPHSSIM 60

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK-------TYEEVEKTLDRDHI 189
           +HQP GG  GQASDI  +A  I KI+ + N I   +  K       T EE+   ++RD  
Sbjct: 61  IHQPLGGTRGQASDILIYANQIQKIREQSNHIMQYHLNKAKGHDKYTIEEINDLMERDKY 120

Query: 190 MSASEACDWGVVDKVLMSRIDIEEKSK 216
           +S  EA + GV+D++L  R + E++ K
Sbjct: 121 LSPDEALELGVIDEILTKRPESEQEKK 147


>gi|78062017|ref|YP_371925.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia sp.
           383]
 gi|77969902|gb|ABB11281.1| ATP-dependent Clp protease proteolytic subunit ClpP [Burkholderia
           sp. 383]
          Length = 203

 Score =  176 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 71/182 (39%), Positives = 105/182 (57%), Gaps = 1/182 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           ++  L + R VF+TG IE  MA  +   L  L A      I ++I+SPGG V +G  I+D
Sbjct: 21  LFDILTRARKVFITGTIEQRMARDVVQHLHAL-AHISDDPIQVFISSPGGHVESGDLIFD 79

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           T++FIKP + T   G  AS G+L+  A  K  R+ LPN R LLHQPSG   G ASD+  +
Sbjct: 80  TLRFIKPRVITIGSGWVASAGALIYLAANKEDRYTLPNTRFLLHQPSGESRGPASDLNIY 139

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
             +IVK++ RLN I+    G+  E++     RD  +SA EA  +G+  K++ S  +I+ +
Sbjct: 140 LDEIVKMRDRLNRIFADATGQAVEKIASDTARDFWLSAEEAVQYGLAYKIISSESEIDNR 199

Query: 215 SK 216
           + 
Sbjct: 200 TN 201


>gi|167949879|ref|ZP_02536953.1| peptidase S14, ClpP [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 125

 Score =  176 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 59/119 (49%), Positives = 89/119 (74%)

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
           M+IYDTMQFI+P +ST C+GQAASMG+LLL+ G  G R+ LPN+R+++HQP GG  GQAS
Sbjct: 1   MSIYDTMQFIRPDVSTMCIGQAASMGALLLTGGAPGKRYCLPNSRMMIHQPLGGVQGQAS 60

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           DIE HA++I+ ++ RLNEI   + G++ +++    +RD+ +   +A  +G++D+VL  R
Sbjct: 61  DIEIHAKEILLLRERLNEILAHHTGQSLKQIAADTERDNFLGGEDAVAYGLIDQVLAQR 119


>gi|255023203|ref|ZP_05295189.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes FSL J1-208]
          Length = 190

 Score =  175 bits (445), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 66/191 (34%), Positives = 117/191 (61%), Gaps = 1/191 (0%)

Query: 22  VVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS 81
           + E  N    +  +  +L+  R V + G+I   +A  +  QLL LE+ +    I+++INS
Sbjct: 1   MAENKNNENITNILTQKLIDTRTVLIYGEINQELAEDVSKQLLLLESISND-PITIFINS 59

Query: 82  PGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
            GG V AG  I+D ++FIKP +     G  AS G  +  A +K  RF+LPN R ++HQP+
Sbjct: 60  QGGHVEAGDTIHDMIKFIKPTVKVVGTGWVASAGITIYLAAKKENRFSLPNTRYMIHQPA 119

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
           GG  GQ+++IE  A++I++++ R+N +  +  G++YE++ K  DR+  +S  EA D+G+V
Sbjct: 120 GGVQGQSTEIEIEAKEIIRMRERINRLIAEATGQSYEQISKDTDRNFWLSVKEAKDYGIV 179

Query: 202 DKVLMSRIDIE 212
           ++++ +R  ++
Sbjct: 180 NEIIENRDGLK 190


>gi|46907356|ref|YP_013745.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes str. 4b F2365]
 gi|47091939|ref|ZP_00229733.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           monocytogenes str. 4b H7858]
 gi|254852989|ref|ZP_05242337.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes FSL R2-503]
 gi|254932981|ref|ZP_05266340.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes HPB2262]
 gi|254994469|ref|ZP_05276659.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes FSL J2-064]
 gi|300764285|ref|ZP_07074279.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           monocytogenes FSL N1-017]
 gi|46880623|gb|AAT03922.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|47019655|gb|EAL10394.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           monocytogenes str. 4b H7858]
 gi|258606332|gb|EEW18940.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes FSL R2-503]
 gi|293584539|gb|EFF96571.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes HPB2262]
 gi|300514937|gb|EFK41990.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           monocytogenes FSL N1-017]
 gi|328466729|gb|EGF37855.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes 1816]
 gi|328475174|gb|EGF45955.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes 220]
          Length = 190

 Score =  175 bits (445), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 67/191 (35%), Positives = 118/191 (61%), Gaps = 1/191 (0%)

Query: 22  VVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS 81
           + E T     +  +  +L+  R V + G+I   +A  +  QLL LE+ +    I+++INS
Sbjct: 1   MAENTKNENITNILTQKLIDTRTVLIYGEINQELAEDVSKQLLLLESISND-PITIFINS 59

Query: 82  PGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
            GG V AG  I+D ++FIKP +     G  AS G  +  A EK  RF+LPN R ++HQP+
Sbjct: 60  QGGHVEAGDTIHDMIKFIKPTVKVVGTGWVASAGITIYLAAEKENRFSLPNTRYMIHQPA 119

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
           GG  GQ+++IE  A++I++++ R+N +  +  G++YE++ K  DR+  +S +EA D+G+V
Sbjct: 120 GGVQGQSTEIEIEAKEIIRMRERINRLIAEATGQSYEKISKDTDRNFWLSVNEAKDYGIV 179

Query: 202 DKVLMSRIDIE 212
           ++++ +R  ++
Sbjct: 180 NEIIENRDGLK 190


>gi|315281892|ref|ZP_07870418.1| Clp protease [Listeria marthii FSL S4-120]
 gi|313614464|gb|EFR88082.1| Clp protease [Listeria marthii FSL S4-120]
          Length = 190

 Score =  175 bits (445), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 67/191 (35%), Positives = 118/191 (61%), Gaps = 1/191 (0%)

Query: 22  VVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS 81
           + E  N    +  +  +L+  R V + G+I   +A  +  QLL LE+ +    I+++INS
Sbjct: 1   MTENKNNENIANILTQKLIDTRTVLIYGEINQELAEDVSKQLLLLESISND-PITIFINS 59

Query: 82  PGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
            GG V AG  I+D ++FIKP +     G  AS G  +  A +K  RF+LPN R ++HQP+
Sbjct: 60  QGGHVEAGDTIHDMIKFIKPTVKVVGTGWVASAGITIYLAAKKENRFSLPNTRYMIHQPA 119

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
           GG  GQ+++IE  A++I++++ R+N +  K  G++YE++ K  DR+  +S +EA D+G+V
Sbjct: 120 GGVQGQSTEIEIEAKEIIRMRERINRLIAKATGQSYEQISKDTDRNFWLSVNEAKDYGIV 179

Query: 202 DKVLMSRIDIE 212
           ++++ +R  ++
Sbjct: 180 NEIIENRDGLK 190


>gi|224500753|ref|ZP_03669102.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes Finland 1988]
          Length = 190

 Score =  175 bits (445), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 67/191 (35%), Positives = 118/191 (61%), Gaps = 1/191 (0%)

Query: 22  VVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS 81
           + E T     +  +  +L+  R V + G+I   +A  +  QLL LE+ +    I+++INS
Sbjct: 1   MTENTKNENITNILTQKLIDTRTVLIYGEINQELAEDVSKQLLLLESISND-PITIFINS 59

Query: 82  PGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
            GG V AG  I+D ++FIKP +     G  AS G  +  A EK  RF+LPN R ++HQP+
Sbjct: 60  QGGHVEAGDTIHDMIKFIKPTVKVVGTGWVASAGITIYLAAEKENRFSLPNTRYMIHQPA 119

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
           GG  GQ+++IE  A++I++++ R+N +  +  G++YE++ K  DR+  +S +EA D+G+V
Sbjct: 120 GGVQGQSTEIEIEAKEIIRMRERINRLIAEATGQSYEQISKDTDRNFWLSVNEAKDYGIV 179

Query: 202 DKVLMSRIDIE 212
           ++++ +R  ++
Sbjct: 180 NEIIENRDGLK 190


>gi|197106599|ref|YP_002131976.1| protease subunit of ATP-dependent Clp protease [Phenylobacterium
           zucineum HLK1]
 gi|196480019|gb|ACG79547.1| protease subunit of ATP-dependent Clp protease [Phenylobacterium
           zucineum HLK1]
          Length = 205

 Score =  175 bits (445), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 71/177 (40%), Positives = 108/177 (61%), Gaps = 1/177 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           + + L K R V V G+I+  +A  + AQL  L AE   K I + INSPGG V +G  I+D
Sbjct: 30  VQNALFKSRTVLVFGEIDMRLAERVTAQLTALAAE-SDKPIRMIINSPGGHVESGDTIHD 88

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            +QF   P++    G  AS G+ +     K  R  LPN R LLHQP+GG  GQASDIE  
Sbjct: 89  MIQFSPAPVTVIGTGWVASAGAHIYLGAPKEHRLCLPNTRFLLHQPAGGVRGQASDIEIE 148

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           A++I+K++ R+N +  +  G++YE+V+K   R+  MSA +A ++G+V +++ +  +I
Sbjct: 149 AEEIIKMRERVNRMIARETGQSYEKVDKDTTRNFWMSAEQAVEYGLVSRIIKNTAEI 205


>gi|16803178|ref|NP_464663.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes EGD-e]
 gi|47094980|ref|ZP_00232593.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           monocytogenes str. 1/2a F6854]
 gi|224502566|ref|ZP_03670873.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes FSL R2-561]
 gi|254828498|ref|ZP_05233185.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes FSL N3-165]
 gi|254830108|ref|ZP_05234763.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes 10403S]
 gi|254898700|ref|ZP_05258624.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes J0161]
 gi|254911811|ref|ZP_05261823.1| ATP-dependent Clp protease [Listeria monocytogenes J2818]
 gi|254936136|ref|ZP_05267833.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes F6900]
 gi|255026166|ref|ZP_05298152.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes FSL J2-003]
 gi|284801459|ref|YP_003413324.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes 08-5578]
 gi|284994601|ref|YP_003416369.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes 08-5923]
 gi|16410554|emb|CAC99216.1| lmo1138 [Listeria monocytogenes EGD-e]
 gi|47016598|gb|EAL07518.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Listeria
           monocytogenes str. 1/2a F6854]
 gi|258600894|gb|EEW14219.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes FSL N3-165]
 gi|258608725|gb|EEW21333.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes F6900]
 gi|284057021|gb|ADB67962.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes 08-5578]
 gi|284060068|gb|ADB71007.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes 08-5923]
 gi|293589764|gb|EFF98098.1| ATP-dependent Clp protease [Listeria monocytogenes J2818]
          Length = 190

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 67/191 (35%), Positives = 118/191 (61%), Gaps = 1/191 (0%)

Query: 22  VVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS 81
           + E T     +  +  +L+  R V + G+I   +A  +  QLL LE+ +    I+++INS
Sbjct: 1   MAENTKNENITNILTQKLIDTRTVLIYGEINQELAEDVSKQLLLLESISND-PITIFINS 59

Query: 82  PGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
            GG V AG  I+D ++FIKP +     G  AS G  +  A EK  RF+LPN R ++HQP+
Sbjct: 60  QGGHVEAGDTIHDMIKFIKPTVKVVGTGWVASAGITIYLAAEKENRFSLPNTRYMIHQPA 119

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
           GG  GQ+++IE  A++I++++ R+N +  +  G++YE++ K  DR+  +S +EA D+G+V
Sbjct: 120 GGVQGQSTEIEIEAKEIIRMRERINRLIAEATGQSYEQISKDTDRNFWLSVNEAKDYGIV 179

Query: 202 DKVLMSRIDIE 212
           ++++ +R  ++
Sbjct: 180 NEIIENRDGLK 190


>gi|283050528|gb|ADB07677.1| ATP-dependent Clp protease proteolytic subunit [Ehrharta erecta]
          Length = 180

 Score =  175 bits (444), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 62/163 (38%), Positives = 94/163 (57%), Gaps = 1/163 (0%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM 108
            +I   +   I   +++L  E+   +I L+INSPGG + +GMAI+DTMQ + P I T C+
Sbjct: 1   QEIRGEITNHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAIFDTMQTVTPDIYTICL 60

Query: 109 GQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIERHAQDIVKIKRRLNE 167
           G AASM S +L  GE   R A P+ARI+LHQP S  +  +  +     +++ K++  +  
Sbjct: 61  GIAASMASFILLGGEPTKRIAFPHARIMLHQPASAYYRARVPEFLLEVEELHKVREMITR 120

Query: 168 IYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           +Y    GK +  V + ++RD  MSA EA  +G+VD V    ID
Sbjct: 121 VYALRTGKPFWVVSEDMERDVFMSAEEAKAYGLVDTVGDEMID 163


>gi|116872513|ref|YP_849294.1| ATP-dependent Clp protease proteolytic subunit [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|116741391|emb|CAK20515.1| ATP-dependent Clp protease subunit ClpP [Listeria welshimeri
           serovar 6b str. SLCC5334]
          Length = 190

 Score =  175 bits (444), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 66/191 (34%), Positives = 120/191 (62%), Gaps = 1/191 (0%)

Query: 22  VVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS 81
           ++E  N    +  +  +++  R V + G+I   +A  +  QLL LE+    + I+++INS
Sbjct: 1   MIENKNNENITNILTQKMIDTRTVLIYGEINQELAEEVSKQLLLLESI-SDEPITIFINS 59

Query: 82  PGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
            GG V AG  I+D ++FIKP +     G  AS G  +  A EK  RF+LPN R ++HQP+
Sbjct: 60  QGGHVEAGDTIHDMIKFIKPTVKVVGTGWVASAGITIYLAAEKENRFSLPNTRYMIHQPA 119

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
           GG  GQ+++IE  A++I++++ R+N +  +  G++YE++ K  DR+  +S +EA D+G+V
Sbjct: 120 GGVQGQSTEIEIEAKEIIRMRERINRLIAEATGQSYEKISKDTDRNFWLSVNEAKDYGIV 179

Query: 202 DKVLMSRIDIE 212
           ++++ +R +++
Sbjct: 180 NEIIQNRDNLK 190


>gi|15595102|ref|NP_212891.1| ATP-dependent Clp protease proteolytic subunit [Borrelia
           burgdorferi B31]
 gi|32171353|sp|O51698|CLPP2_BORBU RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
           AltName: Full=Endopeptidase Clp 2
 gi|2688687|gb|AAC67097.1| ATP-dependent Clp protease proteolytic component (clpP-2) [Borrelia
           burgdorferi B31]
          Length = 206

 Score =  175 bits (444), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 67/174 (38%), Positives = 108/174 (62%)

Query: 40  LKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           LK R + + G+I   ++ L   ++L LEA + +K I +YI+S GG + AG AI++ ++F+
Sbjct: 29  LKSRSIVIAGEITKDVSRLFQEKILLLEALDFKKPIFVYIDSEGGDIDAGFAIFNMIRFV 88

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
           KP + T  +G  AS  +L+  A +   RF+LP AR LLHQP  GF G A+DIE +  ++ 
Sbjct: 89  KPKVFTVGVGLVASAAALIFLAAKLENRFSLPFARYLLHQPLSGFKGVATDIEIYTNELN 148

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
           K+K+ LN I  K  G+   ++EK  DRD  + +S A  +G+V +V+ ++  +EE
Sbjct: 149 KVKKELNNIISKETGQKISKIEKDTDRDFWLDSSAAKKYGLVFEVVETKYQLEE 202


>gi|283050532|gb|ADB07680.1| ATP-dependent Clp protease proteolytic subunit [Phyllostachys
           aurea]
          Length = 180

 Score =  175 bits (443), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 62/163 (38%), Positives = 94/163 (57%), Gaps = 1/163 (0%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM 108
            +I   +   I   +++L  E+   +I L+INSPGG + +GMAI+DTMQ + P I T C+
Sbjct: 1   QEIRCEVTNHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAIFDTMQTVTPDIYTICL 60

Query: 109 GQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIERHAQDIVKIKRRLNE 167
           G AASM S +L  GE   R A P+ARI+LHQP S  +  +  +     +++ K++  +  
Sbjct: 61  GMAASMASFILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFLLEVEELHKVREMITR 120

Query: 168 IYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           +Y    GK +  V + ++RD  MSA EA  +G+VD V    ID
Sbjct: 121 VYALRTGKPFWVVSEDMERDVFMSADEAKAYGLVDIVGDEMID 163


>gi|99024182|dbj|BAE94553.1| ATP-dependent protease proteolytic subunit ClpP [Takakia
           lepidozioides]
          Length = 176

 Score =  175 bits (443), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 66/172 (38%), Positives = 108/172 (62%), Gaps = 3/172 (1%)

Query: 19  VPMVVEQTNRGERSY--DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +    E +   D+Y+RL +ER++F    ++D +A      +++L  E+  K++ 
Sbjct: 5   VPKVPFRLPGEEDAVRIDVYNRLHRERLLFPGQHVDDEIANQPIGIMMYLNGEDESKDMY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYINSPGG V AG+++YD MQF+ P + T CMG AASMGS   + GE   R ALP+AR++
Sbjct: 65  LYINSPGGAVLAGISVYDAMQFVAPDVHTICMGLAASMGSFTSTGGEITKRIALPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           +HQP S  + GQA +    A++++K++  + ++YV+  GK    + + ++RD
Sbjct: 125 IHQPASSYYDGQAGECITEAEEVLKLRDCITKVYVQRTGKPLWIISEDMERD 176


>gi|313609325|gb|EFR84959.1| Clp protease [Listeria monocytogenes FSL F2-208]
          Length = 190

 Score =  175 bits (443), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 67/191 (35%), Positives = 116/191 (60%), Gaps = 1/191 (0%)

Query: 22  VVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS 81
           + E  N    +  +  +L+  R V + G+I   +A  +  QLL LE+ +    I+++INS
Sbjct: 1   MAENKNNENITNILTQKLIDTRTVLIYGEINQELAEDVSKQLLLLESISND-PITIFINS 59

Query: 82  PGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
            GG V AG  I+D ++FIKP +     G  AS G  +  A EK  RF+LPN R ++HQP+
Sbjct: 60  QGGHVEAGDTIHDMIKFIKPTVKVVGTGWVASAGITIYLAAEKENRFSLPNTRYMIHQPA 119

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
           GG  GQ+++IE  A++I++++ R+N +  +  G++YE++ K  DR+  +S  EA D+G+V
Sbjct: 120 GGVQGQSTEIEIEAKEIIRMRERINRLIAEATGQSYEQISKDTDRNFWLSVKEAKDYGIV 179

Query: 202 DKVLMSRIDIE 212
            +++ +R  ++
Sbjct: 180 SEIIENRDGLK 190


>gi|218249761|ref|YP_002375256.1| Clp protease [Borrelia burgdorferi ZS7]
 gi|223889372|ref|ZP_03623958.1| Clp protease [Borrelia burgdorferi 64b]
 gi|226321456|ref|ZP_03796983.1| Clp protease [Borrelia burgdorferi Bol26]
 gi|218164949|gb|ACK75010.1| Clp protease [Borrelia burgdorferi ZS7]
 gi|223885058|gb|EEF56162.1| Clp protease [Borrelia burgdorferi 64b]
 gi|226233252|gb|EEH32004.1| Clp protease [Borrelia burgdorferi Bol26]
          Length = 198

 Score =  175 bits (443), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 67/174 (38%), Positives = 108/174 (62%)

Query: 40  LKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           LK R + + G+I   ++ L   ++L LEA + +K I +YI+S GG + AG AI++ ++F+
Sbjct: 21  LKSRSIVIAGEITKDVSRLFQEKILLLEALDFKKPIFVYIDSEGGDIDAGFAIFNMIRFV 80

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
           KP + T  +G  AS  +L+  A +   RF+LP AR LLHQP  GF G A+DIE +  ++ 
Sbjct: 81  KPKVFTVGVGLVASAAALIFLAAKLENRFSLPFARYLLHQPLSGFKGVATDIEIYTNELN 140

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
           K+K+ LN I  K  G+   ++EK  DRD  + +S A  +G+V +V+ ++  +EE
Sbjct: 141 KVKKELNNIISKETGQKISKIEKDTDRDFWLDSSAAKKYGLVFEVVETKYQLEE 194


>gi|119382774|ref|YP_913830.1| endopeptidase Clp [Paracoccus denitrificans PD1222]
 gi|119372541|gb|ABL68134.1| ATP-dependent Clp protease proteolytic subunit ClpP [Paracoccus
           denitrificans PD1222]
          Length = 211

 Score =  174 bits (442), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 66/173 (38%), Positives = 104/173 (60%), Gaps = 1/173 (0%)

Query: 40  LKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
            K R V V G I D +A    A LL L AE+  + I++ I+SPGG V +G  I+D ++FI
Sbjct: 40  FKSRTVIVAGPITDKLAQRTVAHLLAL-AEDSDEPINMLISSPGGHVESGDMIHDVIKFI 98

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
           +P + T   G  AS G+L+    +K  R+ LPN R L+HQPSGG  G ++D+   A+ + 
Sbjct: 99  RPTVRTIGSGWVASAGALIFVGADKENRYCLPNTRFLIHQPSGGIGGTSTDMMIQAEQVR 158

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
            ++ RLN+I+ +  G+  E +EK   RD  ++  EA D+G++ KV+ S  +++
Sbjct: 159 LMRDRLNQIFAEATGQPVERIEKDTQRDFWLNTQEALDYGLLGKVIRSVDELK 211


>gi|298710838|emb|CBJ26347.1| ATP-dependent Clp protease, proteolytic subunit [Ectocarpus
           siliculosus]
          Length = 237

 Score =  174 bits (442), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 68/189 (35%), Positives = 100/189 (52%), Gaps = 30/189 (15%)

Query: 19  VPMVVEQTNR--GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  +          DIY+RL +ERI+F+  +I+D +A  I   LL+L++E+  K I 
Sbjct: 72  VPKVAYRVPGAPTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVLLYLDSEDSTKPIY 131

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LY+N PGG V AG+A++DTMQ I+  + T  +G AASM S +L+AG K            
Sbjct: 132 LYVNCPGGSVIAGLALFDTMQHIRSEVVTINVGLAASMASFILAAGAK------------ 179

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
                             A  I+ I+  +  +Y    G+T E++   LDRD+ MSA  A 
Sbjct: 180 ----------------VEATQIMHIRDNIVRMYAMMTGQTQEQITIDLDRDNFMSAQAAA 223

Query: 197 DWGVVDKVL 205
           D+G+VD V+
Sbjct: 224 DYGLVDNVI 232


>gi|222151830|ref|YP_002560990.1| ATP-dependent Clp protease proteolytic subunit [Macrococcus
           caseolyticus JCSC5402]
 gi|222120959|dbj|BAH18294.1| ATP-dependent Clp protease proteolytic subunit [Macrococcus
           caseolyticus JCSC5402]
          Length = 184

 Score =  174 bits (442), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 65/175 (37%), Positives = 114/175 (65%), Gaps = 1/175 (0%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
            ++++ R + ++G I+D  A  +  QLL L++ N +  I L I+SPGG V +G  I+D +
Sbjct: 11  EKMIESRTILISGGIDDKSAKEVVNQLLLLDSINHE-PIKLIISSPGGHVDSGYLIHDMI 69

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQ 156
            FI+  +     G   S G L+  +G+K  R+ALPN R ++HQPSGG  GQAS++E  A+
Sbjct: 70  NFIESEVKIIGAGWVVSAGVLIYLSGKKENRYALPNTRFMIHQPSGGTQGQASNMEITAK 129

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           +I++ +++LNE+  +  GK+ EEVE+   RD+ ++  EA ++G+V+K++ ++ +I
Sbjct: 130 EIIRTRQKLNELIARETGKSVEEVEQHTGRDYWLNTEEAKEYGIVNKIIENQKEI 184


>gi|163858206|ref|YP_001632505.1| ATP-dependent Clp protease proteolytic component [Bordetella petrii
           DSM 12804]
 gi|163261934|emb|CAP44236.1| similar to ATP-dependent Clp protease proteolytic component
           [Bordetella petrii]
          Length = 217

 Score =  174 bits (442), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 62/186 (33%), Positives = 103/186 (55%), Gaps = 1/186 (0%)

Query: 29  GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTA 88
           G+ S  +  +  + R V V G I D +A+    +LL L+AE     I + ++SPGG + +
Sbjct: 33  GQNSAFLEEKTFRTRTVLVFGTITDAVASETVRRLLTLDAE-SDAPIDMIVSSPGGHLES 91

Query: 89  GMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQA 148
           G AI+D  +FI  P++    G   S  + L     +  RF LP  R L+HQPSGG  G A
Sbjct: 92  GDAIHDVARFISAPVNMIGTGWVGSAATHLYLGAPRERRFCLPQTRFLIHQPSGGAGGPA 151

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           SD+  HA++I++ + R+ ++  +  G+  E V + ++RD  MSA EA  +G+  +++  R
Sbjct: 152 SDMAIHAKEIIRARERIAQVIARETGQPIERVRQDIERDLWMSAEEAIAYGLASRIIERR 211

Query: 209 IDIEEK 214
            D+  +
Sbjct: 212 GDLAGR 217


>gi|86139431|ref|ZP_01058000.1| ATP-dependent Clp protease proteolytic subunit [Roseobacter sp.
           MED193]
 gi|85823934|gb|EAQ44140.1| ATP-dependent Clp protease proteolytic subunit [Roseobacter sp.
           MED193]
          Length = 197

 Score =  174 bits (442), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 68/197 (34%), Positives = 113/197 (57%), Gaps = 4/197 (2%)

Query: 18  LVPMVVEQTNRGERSY---DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
           + P +++ T + E       + +   + R V V G+I D +A    A LL L AE     
Sbjct: 1   MFPKMLDDTEKREARLGTGKVDALFFQSRTVIVAGEINDKLAQRTVAHLLAL-AEESDDP 59

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I+++I+SPGG V +G  ++D + FI+P + T   G  AS G+L+    ++  R+ LPN R
Sbjct: 60  INIFISSPGGHVESGDMVHDVIGFIRPKVRTIGTGWVASAGALIYVGAKQENRYCLPNTR 119

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
            LLHQPSGG  GQASD+   A+ I  +++R + ++ +  G+T E++E    RD  ++A E
Sbjct: 120 FLLHQPSGGIGGQASDMLIQAEQIKIMRQRFDLLFAEATGQTPEKIEADTARDFWLTAQE 179

Query: 195 ACDWGVVDKVLMSRIDI 211
           A D+G+  K++ S  ++
Sbjct: 180 AIDYGLAGKIIHSAEEL 196


>gi|217964793|ref|YP_002350471.1| Clp protease [Listeria monocytogenes HCC23]
 gi|290894308|ref|ZP_06557274.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes FSL J2-071]
 gi|217334063|gb|ACK39857.1| Clp protease [Listeria monocytogenes HCC23]
 gi|290556127|gb|EFD89675.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes FSL J2-071]
 gi|307570646|emb|CAR83825.1| ATP-dependent Clp protease, proteolytic subunit [Listeria
           monocytogenes L99]
          Length = 190

 Score =  174 bits (442), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 67/191 (35%), Positives = 117/191 (61%), Gaps = 1/191 (0%)

Query: 22  VVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS 81
           + E  N    +  +  +L+  R V + G+I   +A  +  QLL LE+ +    I+++INS
Sbjct: 1   MAENKNNENITNILTQKLIDTRTVLIYGEINQELAEDVSKQLLLLESISND-PITIFINS 59

Query: 82  PGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
            GG V AG  I+D ++FIKP +     G  AS G  +  A EK  RF+LPN R ++HQP+
Sbjct: 60  QGGHVEAGDTIHDMIKFIKPTVKVVGTGWVASAGITIYLAAEKENRFSLPNTRYMIHQPA 119

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
           GG  GQ+++IE  A++I++++ R+N +  +  G++YE++ K  DR+  +S +EA D+G+V
Sbjct: 120 GGVQGQSTEIEIEAKEIIRMRERINRLIAEATGQSYEQISKDTDRNFWLSVNEAKDYGIV 179

Query: 202 DKVLMSRIDIE 212
            +++ +R  ++
Sbjct: 180 SEIIENRDGLK 190


>gi|256391236|ref|YP_003112800.1| endopeptidase Clp [Catenulispora acidiphila DSM 44928]
 gi|256357462|gb|ACU70959.1| Endopeptidase Clp [Catenulispora acidiphila DSM 44928]
          Length = 201

 Score =  174 bits (442), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 69/180 (38%), Positives = 103/180 (57%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
            +L   RIV + G ++D   TL+  QLL L  E+P+  ISL+I+SPGG V A +AI D M
Sbjct: 16  EQLFSRRIVVMDGVLDDDNGTLLATQLLSLATEDPEAGISLWIHSPGGSVPAMLAIRDVM 75

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQ 156
           + +   +ST  +G A S G  LLSAG  G RFALP++RIL+HQ S G  G A D+E  A 
Sbjct: 76  RLVPCEVSTLALGLACSAGQFLLSAGAHGRRFALPHSRILMHQGSAGIGGSAVDVEVQAD 135

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           D+  +   +  +   + G+ Y+ V +    D   +A +A D+G +D ++ S   +  + K
Sbjct: 136 DLRHMVNTVLGLIAADTGQPYDRVFEDSLHDRWFTARQAKDYGFIDHIVDSFAQVVPERK 195


>gi|224284163|gb|ACN39818.1| unknown [Picea sitchensis]
          Length = 327

 Score =  174 bits (442), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 59/176 (33%), Positives = 95/176 (53%), Gaps = 11/176 (6%)

Query: 41  KERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV---------VTAGMA 91
             RI+F+   +   +  L+ A+ L+L+  +P++   +YINS G            T G A
Sbjct: 113 NSRIIFIGMPLVPAVTELVIAEFLYLQWLDPRQPTYVYINSTGTSREDGETVALETEGFA 172

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQ--AS 149
           IYDTM  +K  I T   G A     LLL+AG+KG R+ LP+A++LL QP    +GQ  A 
Sbjct: 173 IYDTMMQMKNEIHTVAFGAAVGQACLLLAAGKKGKRYMLPHAQVLLQQPRLPATGQMPAI 232

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           D+   A++++  +    ++  K+ G  +E V K ++R   M   +A ++GV DK+L
Sbjct: 233 DVHIRAKELIHNRDTFVKLLAKHTGNPFETVAKAMERPFYMFPRQAVEFGVADKIL 288


>gi|254823607|ref|ZP_05228608.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes FSL J1-194]
 gi|255522304|ref|ZP_05389541.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes FSL J1-175]
 gi|293592830|gb|EFG00591.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes FSL J1-194]
          Length = 190

 Score =  174 bits (441), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 67/191 (35%), Positives = 118/191 (61%), Gaps = 1/191 (0%)

Query: 22  VVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS 81
           + E T     +  +  +L+  R V + G+I   +A  +  QLL LE+ +    I+++INS
Sbjct: 1   MAENTKNENITNILTQKLIDTRTVLIYGEINQELAEDVSKQLLLLESISNDS-ITIFINS 59

Query: 82  PGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
            GG V AG  I+D ++FIKP +     G  AS G  +  A EK  RF+LPN R ++HQP+
Sbjct: 60  QGGHVEAGDTIHDMIKFIKPTVKVVGTGWVASAGITIYLAAEKENRFSLPNTRYMIHQPA 119

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
           GG  GQ+++IE  A++I++++ R+N +  +  G++YE++ K  DR+  +S +EA D+G+V
Sbjct: 120 GGVQGQSTEIEIEAKEIIRMRERINRLIAEATGQSYEKISKDTDRNFWLSVNEAKDYGIV 179

Query: 202 DKVLMSRIDIE 212
           ++++ +R  ++
Sbjct: 180 NEIIENRDGLK 190


>gi|313635706|gb|EFS01800.1| Clp protease [Listeria seeligeri FSL S4-171]
          Length = 190

 Score =  174 bits (441), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 66/178 (37%), Positives = 113/178 (63%), Gaps = 1/178 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +  +L+  R V + G+I   +A  +  QLL LE+    + I+++INS GG V AG  I+D
Sbjct: 14  LTQKLIDTRTVLIYGEINQELAEDVSKQLLLLESI-SDEPITVFINSQGGHVEAGDTIHD 72

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            ++FIKP +     G  AS G  +  A EK  RF+LPN R ++HQP+GG  GQ+++IE  
Sbjct: 73  MIKFIKPTVKVVGTGWVASAGITIYLAAEKENRFSLPNTRYMIHQPAGGVQGQSTEIEIE 132

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
           A++I++++ R+N +  +  G+TYE++ K  DR+  +S +EA D+G+V +++ +R  ++
Sbjct: 133 AKEIIRMRERINRLIAEATGQTYEKISKDTDRNFWLSVNEAKDYGIVSEIIENRDGLK 190


>gi|289434382|ref|YP_003464254.1| ATP-dependent Clp protease, proteolytic subunit, ClpP family
           [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289170626|emb|CBH27166.1| ATP-dependent Clp protease, proteolytic subunit, ClpP family
           [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|313633774|gb|EFS00515.1| Clp protease [Listeria seeligeri FSL N1-067]
          Length = 190

 Score =  174 bits (441), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 66/178 (37%), Positives = 113/178 (63%), Gaps = 1/178 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +  +L+  R V + G+I   +A  +  QLL LE+    + I+++INS GG V AG  I+D
Sbjct: 14  LTQKLIDTRTVLIYGEINQELAEDVSKQLLLLESI-SDEPITVFINSQGGHVEAGDTIHD 72

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            ++FIKP +     G  AS G  +  A EK  RF+LPN R ++HQP+GG  GQ+++IE  
Sbjct: 73  MIKFIKPTVKVVGTGWVASAGITIYLAAEKENRFSLPNTRYMIHQPAGGVQGQSTEIEIE 132

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
           A++I++++ R+N +  +  G+TYE++ K  DR+  +S +EA D+G+V +++ +R  ++
Sbjct: 133 AKEIIRMRERINRLIAEATGQTYEKISKDTDRNFWLSVNEAKDYGIVSEIIENRDGLK 190


>gi|51970012|dbj|BAD43698.1| ClpP protease complex subunit ClpR3 [Arabidopsis thaliana]
          Length = 315

 Score =  174 bits (441), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 64/193 (33%), Positives = 106/193 (54%), Gaps = 12/193 (6%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           E   R     D+ S LL  RIV++   +   +  L+ A+L++L+  +P++ I +YINS G
Sbjct: 97  EHRPRTPPP-DLPSMLLDGRIVYIGMPLVPAVTELVVAELMYLQWLDPKEPIYIYINSTG 155

Query: 84  GV---------VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
                       + G AIYD++  +K  + T C+G A     LLLSAG KG RF +P+A+
Sbjct: 156 TTRDDGETVGMESEGFAIYDSLMQLKNEVHTVCVGAAIGQACLLLSAGTKGKRFMMPHAK 215

Query: 135 ILLHQPSGGFSG--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
            ++ QP    SG   ASD+   A++++  +  L E+  K+ G + E V   + R + M A
Sbjct: 216 AMIQQPRVPSSGLMPASDVLIRAKEVITNRDILVELLSKHTGNSVETVANVMRRPYYMDA 275

Query: 193 SEACDWGVVDKVL 205
            +A ++GV+D++L
Sbjct: 276 PKAKEFGVIDRIL 288


>gi|159467461|ref|XP_001691910.1| non-catalytic subunit of chloroplast ClpP complex [Chlamydomonas
           reinhardtii]
 gi|158278637|gb|EDP04400.1| non-catalytic subunit of chloroplast ClpP complex [Chlamydomonas
           reinhardtii]
          Length = 282

 Score =  173 bits (440), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 64/207 (30%), Positives = 117/207 (56%), Gaps = 4/207 (1%)

Query: 4   EGCAKKDSEDVFLGLVPMVVEQTN--RGERSYDIYSRLLKERIVFVTGQIEDHMATLICA 61
            G  K+    +    VP V+ +    R     D++     +++VF+   I + +A  + A
Sbjct: 53  SGAPKRKVTTMMPVSVPKVLCRPPGQRQSEWVDLWEAYTYQKVVFIKEAITEDVANNMIA 112

Query: 62  QLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL-S 120
             L+L++ +  K I  ++N PGG V   +A+YDTMQ+++   +T C G    MG  LL +
Sbjct: 113 LTLYLDSLDQ-KRIYYWLNVPGGDVVPTLALYDTMQYVRSKTATVCYGLCLGMGGFLLTA 171

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
            GEKG RFA+P++ +++H PSG   GQAS++   ++++V+++  L+ +     G+ Y+ V
Sbjct: 172 GGEKGYRFAMPHSILMMHHPSGASRGQASEMHIESRELVRMRDYLSLLTSNATGQPYDRV 231

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMS 207
            + L R+  M   +A ++G++DKVL +
Sbjct: 232 IRELSRNKWMDPKQAIEYGMIDKVLTT 258


>gi|18390982|ref|NP_563836.1| ATP-dependent Clp protease proteolytic subunit, putative
           [Arabidopsis thaliana]
 gi|79317437|ref|NP_001031008.1| ATP-dependent Clp protease proteolytic subunit, putative
           [Arabidopsis thaliana]
 gi|75301131|sp|Q8L770|CLPR3_ARATH RecName: Full=ATP-dependent Clp protease proteolytic
           subunit-related protein 3, chloroplastic; Short=ClpR3;
           AltName: Full=nClpP8; Flags: Precursor
 gi|22531207|gb|AAM97107.1| ATP-dependent Clp protease proteolytic subunit (ClpR3), putative
           [Arabidopsis thaliana]
 gi|25083963|gb|AAN72143.1| ATP-dependent Clp protease proteolytic subunit (ClpR3), putative
           [Arabidopsis thaliana]
 gi|51968388|dbj|BAD42886.1| ClpP protease complex subunit ClpR3 [Arabidopsis thaliana]
 gi|51968776|dbj|BAD43080.1| ClpP protease complex subunit ClpR3 [Arabidopsis thaliana]
 gi|51968816|dbj|BAD43100.1| ClpP protease complex subunit ClpR3 [Arabidopsis thaliana]
 gi|51969676|dbj|BAD43530.1| ClpP protease complex subunit ClpR3 [Arabidopsis thaliana]
 gi|51969856|dbj|BAD43620.1| ClpP protease complex subunit ClpR3 [Arabidopsis thaliana]
 gi|51969858|dbj|BAD43621.1| ClpP protease complex subunit ClpR3 [Arabidopsis thaliana]
 gi|51971032|dbj|BAD44208.1| ClpP protease complex subunit ClpR3 [Arabidopsis thaliana]
 gi|51971379|dbj|BAD44354.1| ClpP protease complex subunit ClpR3 [Arabidopsis thaliana]
 gi|51971381|dbj|BAD44355.1| ClpP protease complex subunit ClpR3 [Arabidopsis thaliana]
 gi|51971625|dbj|BAD44477.1| ClpP protease complex subunit ClpR3 [Arabidopsis thaliana]
 gi|51971739|dbj|BAD44534.1| ClpP protease complex subunit ClpR3 [Arabidopsis thaliana]
 gi|110742786|dbj|BAE99296.1| ClpP protease complex subunit ClpR3 [Arabidopsis thaliana]
 gi|332190276|gb|AEE28397.1| ATP-dependent Clp protease proteolytic subunit-related protein 3
           [Arabidopsis thaliana]
 gi|332190277|gb|AEE28398.1| ATP-dependent Clp protease proteolytic subunit-related protein 3
           [Arabidopsis thaliana]
          Length = 330

 Score =  173 bits (440), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 64/193 (33%), Positives = 106/193 (54%), Gaps = 12/193 (6%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           E   R     D+ S LL  RIV++   +   +  L+ A+L++L+  +P++ I +YINS G
Sbjct: 112 EHRPRTPPP-DLPSMLLDGRIVYIGMPLVPAVTELVVAELMYLQWLDPKEPIYIYINSTG 170

Query: 84  GV---------VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
                       + G AIYD++  +K  + T C+G A     LLLSAG KG RF +P+A+
Sbjct: 171 TTRDDGETVGMESEGFAIYDSLMQLKNEVHTVCVGAAIGQACLLLSAGTKGKRFMMPHAK 230

Query: 135 ILLHQPSGGFSG--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
            ++ QP    SG   ASD+   A++++  +  L E+  K+ G + E V   + R + M A
Sbjct: 231 AMIQQPRVPSSGLMPASDVLIRAKEVITNRDILVELLSKHTGNSVETVANVMRRPYYMDA 290

Query: 193 SEACDWGVVDKVL 205
            +A ++GV+D++L
Sbjct: 291 PKAKEFGVIDRIL 303


>gi|195941577|ref|ZP_03086959.1| ATP-dependent Clp protease proteolytic subunit [Borrelia
           burgdorferi 80a]
 gi|216264605|ref|ZP_03436597.1| Clp protease [Borrelia burgdorferi 156a]
 gi|224532594|ref|ZP_03673216.1| Clp protease [Borrelia burgdorferi WI91-23]
 gi|224533365|ref|ZP_03673959.1| Clp protease [Borrelia burgdorferi CA-11.2a]
 gi|225548857|ref|ZP_03769834.1| Clp protease [Borrelia burgdorferi 94a]
 gi|225551857|ref|ZP_03772800.1| Clp protease [Borrelia sp. SV1]
 gi|226320740|ref|ZP_03796297.1| Clp protease [Borrelia burgdorferi 29805]
 gi|215981078|gb|EEC21885.1| Clp protease [Borrelia burgdorferi 156a]
 gi|224512450|gb|EEF82829.1| Clp protease [Borrelia burgdorferi WI91-23]
 gi|224513530|gb|EEF83887.1| Clp protease [Borrelia burgdorferi CA-11.2a]
 gi|225370460|gb|EEG99896.1| Clp protease [Borrelia burgdorferi 94a]
 gi|225371652|gb|EEH01079.1| Clp protease [Borrelia sp. SV1]
 gi|226233852|gb|EEH32576.1| Clp protease [Borrelia burgdorferi 29805]
 gi|312148239|gb|ADQ30898.1| Clp protease [Borrelia burgdorferi JD1]
 gi|312149694|gb|ADQ29765.1| Clp protease [Borrelia burgdorferi N40]
          Length = 198

 Score =  173 bits (440), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 66/174 (37%), Positives = 107/174 (61%)

Query: 40  LKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           LK R + + G+I   ++ L   ++L LE  + +K I +YI+S GG + AG AI++ ++F+
Sbjct: 21  LKSRSIVIAGEITKDVSRLFQEKILLLETLDFKKPIFVYIDSEGGDIDAGFAIFNMIRFV 80

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
           KP + T  +G  AS  +L+  A +   RF+LP AR LLHQP  GF G A+DIE +  ++ 
Sbjct: 81  KPKVFTVGVGLVASAAALIFLAAKLENRFSLPFARYLLHQPLSGFKGVATDIEIYTNELN 140

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
           K+K+ LN I  K  G+   ++EK  DRD  + +S A  +G+V +V+ ++  +EE
Sbjct: 141 KVKKELNNIISKETGQKISKIEKDTDRDFWLDSSAAKKYGLVFEVVETKYQLEE 194


>gi|332190278|gb|AEE28399.1| ATP-dependent Clp protease proteolytic subunit-related protein 3
           [Arabidopsis thaliana]
          Length = 370

 Score =  173 bits (440), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 64/193 (33%), Positives = 106/193 (54%), Gaps = 12/193 (6%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           E   R     D+ S LL  RIV++   +   +  L+ A+L++L+  +P++ I +YINS G
Sbjct: 112 EHRPRTPPP-DLPSMLLDGRIVYIGMPLVPAVTELVVAELMYLQWLDPKEPIYIYINSTG 170

Query: 84  GV---------VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
                       + G AIYD++  +K  + T C+G A     LLLSAG KG RF +P+A+
Sbjct: 171 TTRDDGETVGMESEGFAIYDSLMQLKNEVHTVCVGAAIGQACLLLSAGTKGKRFMMPHAK 230

Query: 135 ILLHQPSGGFSG--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
            ++ QP    SG   ASD+   A++++  +  L E+  K+ G + E V   + R + M A
Sbjct: 231 AMIQQPRVPSSGLMPASDVLIRAKEVITNRDILVELLSKHTGNSVETVANVMRRPYYMDA 290

Query: 193 SEACDWGVVDKVL 205
            +A ++GV+D++L
Sbjct: 291 PKAKEFGVIDRIL 303


>gi|159466488|ref|XP_001691441.1| inactive subunit of chloroplast ClpP complex [Chlamydomonas
           reinhardtii]
 gi|158279413|gb|EDP05174.1| inactive subunit of chloroplast ClpP complex [Chlamydomonas
           reinhardtii]
          Length = 283

 Score =  173 bits (440), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 69/211 (32%), Positives = 117/211 (55%), Gaps = 4/211 (1%)

Query: 4   EGCAKKDSEDVFLGLVPMVVE--QTNRGERS--YDIYSRLLKERIVFVTGQIEDHMATLI 59
              ++++ E   +   P+V    Q   GE +   D+Y  LL  RI+F+ G I D MAT I
Sbjct: 42  SRSSRRNVEARGIRRSPVVTPDIQIGHGEDAIEMDLYRYLLSNRIIFIGGYINDKMATQI 101

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
              L+ LEA +  ++I +YINSPGG   + + + D MQ IKP + T  +G   S  SL++
Sbjct: 102 VGSLMALEAVDENEDIRIYINSPGGQPYSVLGVVDAMQSIKPDVQTVALGACYSYASLVV 161

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
           +AG KG R+A+ N R+++ QP GG  G    I+   +++  + +  +  Y+K  G   ++
Sbjct: 162 AAGTKGKRYAMKNTRLMMTQPMGGSQGDIYQIKATVEELNALYQIFSRYYMKFTGMNQDQ 221

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           +E+   RDH M+  +A   G++D+++  + D
Sbjct: 222 IEQATCRDHFMTPEQAKLEGLIDEIIRGKGD 252


>gi|297849204|ref|XP_002892483.1| ClpP protease complex subunit ClpR3 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338325|gb|EFH68742.1| ClpP protease complex subunit ClpR3 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 332

 Score =  173 bits (440), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 65/193 (33%), Positives = 106/193 (54%), Gaps = 12/193 (6%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           E   R     D+ S LL  RIV++   +   +  L+ A+L++L+  +P++ I +YINS G
Sbjct: 112 EHRPRTPPP-DLPSMLLDGRIVYIGMPLVPAVTELVVAELMYLQWLDPKEPIYIYINSTG 170

Query: 84  GV---------VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
                       + G AIYD++  +K  + T C+G A     LLLSAG KG RF +P+A+
Sbjct: 171 TTRDDGETVGMESEGFAIYDSLMQLKNEVHTVCVGAAIGQACLLLSAGTKGNRFMMPHAK 230

Query: 135 ILLHQPSGGFSG--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
            ++ QP    SG   ASD+   A++++  +  L E+  K+ G + E V   + R + M A
Sbjct: 231 AMIQQPRVPSSGLMPASDVLIRAKEVITNRDILVELLAKHTGNSVETVANVMRRPYYMDA 290

Query: 193 SEACDWGVVDKVL 205
            +A ++GV+DK+L
Sbjct: 291 PKAKEFGVIDKIL 303


>gi|68069489|ref|XP_676656.1| ATP-dependent CLP protease [Plasmodium berghei strain ANKA]
 gi|56496453|emb|CAI00684.1| ATP-dependent CLP protease, putative [Plasmodium berghei]
          Length = 329

 Score =  173 bits (440), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 66/171 (38%), Positives = 104/171 (60%), Gaps = 2/171 (1%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
             K+RI+++T +I    +  +  QLL+L+  N   +I +YINSPGG +  G+AI D   +
Sbjct: 150 FFKKRIIYLTDEINKKTSDELIKQLLYLDNINHN-DIKIYINSPGGSINEGLAILDIFNY 208

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           IK  I T   G  ASM S++L++G+KG R + PN RI++HQP G   G   DIE   ++I
Sbjct: 209 IKSDIQTISFGLVASMASVILASGKKGKRKSFPNCRIMIHQPLGNAYGHPHDIEIQTKEI 268

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           + +K+ L     K   K  E +EK  DRD+  +A EA ++G+VD+V+ +++
Sbjct: 269 LYLKKLLYYYLSKFTNKNEETIEKHSDRDYY-NAYEAKEYGIVDEVVETKL 318


>gi|221217874|ref|ZP_03589341.1| Clp protease [Borrelia burgdorferi 72a]
 gi|225549932|ref|ZP_03770893.1| Clp protease [Borrelia burgdorferi 118a]
 gi|221192180|gb|EEE18400.1| Clp protease [Borrelia burgdorferi 72a]
 gi|225369391|gb|EEG98843.1| Clp protease [Borrelia burgdorferi 118a]
          Length = 198

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 66/174 (37%), Positives = 107/174 (61%)

Query: 40  LKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           LK R + + G+I   ++ L   ++L LE  + +K I +YI+S GG + AG AI++ ++F+
Sbjct: 21  LKSRSIVIAGEITKDVSRLFQEKILLLETLDFKKPIFVYIDSEGGDIDAGFAIFNMIRFV 80

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
           KP + T  +G  AS  +L+  A +   RF+LP AR LLHQP  GF G A+DIE +  ++ 
Sbjct: 81  KPKVFTVGVGLVASAAALIFLAAKLENRFSLPFARYLLHQPLSGFKGVATDIEIYTNELN 140

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
           K+K+ LN I  K  G+   ++EK  DRD  + +S A  +G+V +V+ ++  +EE
Sbjct: 141 KVKKELNNIISKETGQKISKIEKDTDRDFWLDSSAAKKYGLVFEVVETKYQLEE 194


>gi|323148854|ref|YP_004221946.1| clp protease proteolytic subunit [Erodium carvifolium]
 gi|316926318|gb|ADU58171.1| clp protease proteolytic subunit [Erodium carvifolium]
          Length = 197

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 64/192 (33%), Positives = 114/192 (59%), Gaps = 5/192 (2%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  Q++  E     D+Y+RL +ERI+F+  +I++ ++  + + ++FL+ +N     +
Sbjct: 5   VPKVSFQSHEEEDATWIDLYNRLYRERILFLCREIKEELSNNLVSLMVFLDIDNTTWTQT 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           ++I+SPGG V  G+A+YDT+  +     T C G AASM S++L  GE+  R A P+AR++
Sbjct: 65  MFIHSPGGFVFPGLAVYDTVLAVGAR--TVCAGIAASMASVVLIGGEQSKRLAFPHARVM 122

Query: 137 LHQPSG-GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP    F    S+I    + ++ ++ R+  +YV+  G+ +  +   L+ D  MSA EA
Sbjct: 123 VHQPRMKDFEDSTSEILMETRVLLDLRERITHLYVQRTGQPHRIIAADLEVDTYMSAKEA 182

Query: 196 CDWGVVDKVLMS 207
             +G++D +  S
Sbjct: 183 VTYGIIDAIAQS 194


>gi|307718260|ref|YP_003873792.1| hypothetical protein STHERM_c05540 [Spirochaeta thermophila DSM
           6192]
 gi|306531985|gb|ADN01519.1| hypothetical protein STHERM_c05540 [Spirochaeta thermophila DSM
           6192]
 gi|315185422|gb|EFU19194.1| ATP-dependent Clp protease proteolytic subunit ClpP [Spirochaeta
           thermophila DSM 6578]
          Length = 194

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 63/188 (33%), Positives = 115/188 (61%), Gaps = 2/188 (1%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           E+  +G++   +  + L+ R + ++G++   +   +  QLL LE +   + + ++I+SPG
Sbjct: 8   ERKEQGDQQA-LMEKFLRTRSIILSGEVNKELVEKVVKQLLLLE-QMGDEPVKVFIDSPG 65

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           G V AG AI+D ++F+  P+ T  MG  AS  +L+L A  K  R  LPN+  L+HQP  G
Sbjct: 66  GDVDAGFAIFDMIRFVGVPVYTIGMGLVASAAALILLAAPKEYRLGLPNSHYLIHQPWSG 125

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
             G A++IE HA++I + + ++N+I  +  G+  E+VEK  DRD+ ++A EA  +G++ +
Sbjct: 126 MRGVATEIEIHAKEIERTRHKINQIISEETGRPLEQVEKDTDRDYWLNAGEALSYGLISR 185

Query: 204 VLMSRIDI 211
           ++ S  ++
Sbjct: 186 IISSGKEL 193


>gi|239814219|ref|YP_002943129.1| endopeptidase Clp [Variovorax paradoxus S110]
 gi|239800796|gb|ACS17863.1| Endopeptidase Clp [Variovorax paradoxus S110]
          Length = 198

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 60/181 (33%), Positives = 105/181 (58%)

Query: 31  RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGM 90
           R+  +  +  K R + + G I D +A  +  +L+ L+A++  K I + ++SPGG + +G 
Sbjct: 16  RNSYLEEKAFKSRTLLIFGSITDSVAADVTRRLIALDADSGDKPIDILVSSPGGHLESGD 75

Query: 91  AIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASD 150
           AI+D ++FI  P++    G   S  + L  A  +  R  LPN R L+HQPSGG  GQA+D
Sbjct: 76  AIHDIVRFISAPVNMIGTGWVGSAATHLYLAVPRERRVCLPNTRFLIHQPSGGAGGQATD 135

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           I   AQ+I+K + R+     +  GK  + V   ++RD  +SA+EA ++G+V +++  + +
Sbjct: 136 IAIQAQEIIKARHRIAHEIARETGKPIDVVLADIERDRWLSAAEAVEYGLVSRIIQRKTE 195

Query: 211 I 211
           +
Sbjct: 196 L 196


>gi|224534499|ref|ZP_03675075.1| Clp protease [Borrelia spielmanii A14S]
 gi|224514176|gb|EEF84494.1| Clp protease [Borrelia spielmanii A14S]
          Length = 198

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 66/174 (37%), Positives = 107/174 (61%)

Query: 40  LKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           LK R + + G+I   ++ L   ++L LE  + +K I +YI+S GG + AG AI++ ++F+
Sbjct: 21  LKSRSIVIAGEITKDVSRLFQEKILLLETLDFKKPIFVYIDSEGGDIDAGFAIFNMIRFV 80

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
           KP + T  +G  AS  +L+  A +   RF+LP AR LLHQP  GF G A+DIE +  ++ 
Sbjct: 81  KPKVFTVGVGLVASAAALIFLAAKLENRFSLPFARYLLHQPLSGFKGVATDIEIYTNELN 140

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
           K+K+ LN I  K  G+   ++EK  DRD  + +S A  +G+V +V+ ++  +EE
Sbjct: 141 KLKKELNNIISKETGQNISKIEKDTDRDFWLDSSSAKKYGLVFEVVETKCQLEE 194


>gi|219684459|ref|ZP_03539403.1| Clp protease [Borrelia garinii PBr]
 gi|219685608|ref|ZP_03540424.1| Clp protease [Borrelia garinii Far04]
 gi|219672448|gb|EED29501.1| Clp protease [Borrelia garinii PBr]
 gi|219672886|gb|EED29909.1| Clp protease [Borrelia garinii Far04]
          Length = 198

 Score =  173 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 66/174 (37%), Positives = 106/174 (60%)

Query: 40  LKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           LK R + + G+I   ++ L   ++L LE  + +K I +YI+S GG + AG AI++ ++F+
Sbjct: 21  LKSRSIVIAGEITKDVSRLFQEKILLLETLDFKKPIFVYIDSEGGDIDAGFAIFNMIRFV 80

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
           KP + T  +G  AS  +L+  A +   RF+LP AR LLHQP  GF G A+DIE +  ++ 
Sbjct: 81  KPKVFTVGVGLVASAAALIFLAAKLENRFSLPFARYLLHQPLSGFKGVATDIEIYTNELN 140

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
           K+K+ LN I  K  G+    +EK  DRD  + +S A  +G+V +V+ ++  +EE
Sbjct: 141 KVKKELNSIISKETGQDISTIEKDTDRDFWLDSSAAKKYGLVFEVVETKWQLEE 194


>gi|224531790|ref|ZP_03672422.1| Clp protease [Borrelia valaisiana VS116]
 gi|224511255|gb|EEF81661.1| Clp protease [Borrelia valaisiana VS116]
          Length = 198

 Score =  173 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 65/174 (37%), Positives = 106/174 (60%)

Query: 40  LKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           LK R + + G+I   ++ L   ++L LE  + +K I +YI+S GG + AG AI++ ++F+
Sbjct: 21  LKSRSIVIAGEITKDVSRLFQEKILLLETLDFKKPIFVYIDSEGGDIDAGFAIFNMIRFV 80

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
           KP + T  +G  AS  +L+  A +   RF+LP AR LLHQP  GF G A+DIE +  ++ 
Sbjct: 81  KPKVFTVGVGLVASAAALIFLAAKLENRFSLPFARYLLHQPLSGFKGVATDIEIYTNELN 140

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
           K+K+ LN I  K  G+   ++EK  DRD  + +  A  +G+V +V+ ++  +EE
Sbjct: 141 KVKKELNNIISKETGQKISKIEKDTDRDFWLDSGAAKKYGLVFEVVETKCQLEE 194


>gi|294811360|ref|ZP_06770003.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           clavuligerus ATCC 27064]
 gi|326439908|ref|ZP_08214642.1| ATP-dependent Clp protease, protease subunit [Streptomyces
           clavuligerus ATCC 27064]
 gi|294323959|gb|EFG05602.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           clavuligerus ATCC 27064]
          Length = 220

 Score =  173 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 76/195 (38%), Positives = 117/195 (60%), Gaps = 1/195 (0%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P   E+T  G R+ D Y++LL+ RIVF+   ++D     + AQ L LE   P  EISLY
Sbjct: 24  LPEFHERTPYGPRTLDPYAKLLEGRIVFLGTPVDDIAVGDVIAQFLHLEYAQPDGEISLY 83

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG + A +AI+DT+Q I+  + T C+GQAA   +LLL+AG  G R  LP ARI L 
Sbjct: 84  INSPGGSLDAVLAIHDTVQLIRCTVETVCVGQAAGPAALLLAAGSPGRRLTLPGARIALS 143

Query: 139 QPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
            P+   + GQ SD+E HA ++++ + +   +  ++ G+    V   L+R  ++ A+ A +
Sbjct: 144 GPALEKTVGQPSDLELHAAELLRQRTQFTGLLARHTGRDERRVAADLERTTVLDAAGALE 203

Query: 198 WGVVDKVLMSRIDIE 212
           +G+VD++L  R    
Sbjct: 204 YGLVDQILSRRAATP 218


>gi|313624155|gb|EFR94223.1| Clp protease [Listeria innocua FSL J1-023]
          Length = 190

 Score =  173 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 65/191 (34%), Positives = 118/191 (61%), Gaps = 1/191 (0%)

Query: 22  VVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS 81
           + E T     +  +  +L+  R V + G+I   +A  +  QLL LE+    + I++++NS
Sbjct: 1   MAENTKNENITNILTQKLIDTRTVLIYGEINQELAEDVSKQLLLLESI-SDEPITIFVNS 59

Query: 82  PGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
            GG V AG  I+D ++FIKP +     G  AS G  +  A +K  R++LPN R ++HQP+
Sbjct: 60  QGGHVEAGDTIHDMIKFIKPTVKVVGTGWVASAGITIYLAADKENRYSLPNTRYMIHQPA 119

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
           GG  GQ+++IE  A++I++++ R+N +  +  G++YE++ K  DR+  +S +EA D+G+V
Sbjct: 120 GGVQGQSTEIEIEAKEIIRMRERINRLIAEATGQSYEKISKDTDRNFWLSVNEAKDYGIV 179

Query: 202 DKVLMSRIDIE 212
           ++++ +R  I+
Sbjct: 180 NEIIQNRDGIK 190


>gi|226223740|ref|YP_002757847.1| ATP-dependent Clp protease proteolytic component [Listeria
           monocytogenes Clip81459]
 gi|225876202|emb|CAS04911.1| Putative ATP-dependent Clp protease proteolytic component [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
          Length = 190

 Score =  173 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 65/191 (34%), Positives = 118/191 (61%), Gaps = 1/191 (0%)

Query: 22  VVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS 81
           + E  N    +  +  +L+  R V + G+I   +A  +  QLL LE+    + I++++NS
Sbjct: 1   MAENKNNENITNILTQKLIDTRTVLIYGEINQELAEDVSKQLLLLESI-SDEPITIFVNS 59

Query: 82  PGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
            GG V AG  I+D ++FIKP +     G  AS G  +  A +K  R++LPN R ++HQP+
Sbjct: 60  QGGHVEAGDTIHDMIKFIKPTVKVVGTGWVASAGITIYLAADKENRYSLPNTRYMIHQPA 119

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
           GG  GQ+++IE  A++I++++ R+N +  +  G++YE++ K  DR+  +S +EA D+G+V
Sbjct: 120 GGVQGQSTEIEIEAKEIIRMRERINRLIAEATGQSYEKISKDTDRNFWLSVNEAKDYGIV 179

Query: 202 DKVLMSRIDIE 212
           ++++ +R  I+
Sbjct: 180 NEIIQNRDGIK 190


>gi|224284192|gb|ACN39832.1| unknown [Picea sitchensis]
          Length = 327

 Score =  173 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 11/176 (6%)

Query: 41  KERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV---------VTAGMA 91
             RI+F+   +   +  L+ A+ L+L+  +P++   +YINS G            T G A
Sbjct: 113 NSRIIFIGMPLVPAVTELVIAEFLYLQWLDPRQPTYVYINSTGTSREDGETVALETEGFA 172

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQ--AS 149
           IYDTM  +K  + T   G A     LLL+AG+KG R+ LP+A++LL QP    +GQ  A 
Sbjct: 173 IYDTMMQMKNEMHTVAFGAAVGQACLLLAAGKKGKRYMLPHAQVLLQQPRLPATGQMPAI 232

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           D+   A++++  +    ++  K+ G  +E V K ++R   M   +A ++GV DK+L
Sbjct: 233 DVHIRAKELIHNRDTFVKLLAKHTGNPFETVAKAMERPFYMFPRQAVEFGVADKIL 288


>gi|270642132|ref|ZP_06222130.1| ATP-dependent Clp protease, proteolytic subunit [Haemophilus
           influenzae HK1212]
 gi|270317333|gb|EFA28875.1| ATP-dependent Clp protease, proteolytic subunit [Haemophilus
           influenzae HK1212]
          Length = 269

 Score =  173 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 63/111 (56%), Positives = 82/111 (73%)

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
           FIKP I T C+GQA SMG+ LL+ G  G R ALPNAR+++HQP GGF GQASDI+ HAQ+
Sbjct: 159 FIKPDIRTLCIGQACSMGAFLLAGGTAGKRAALPNARVMIHQPLGGFRGQASDIQIHAQE 218

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           I+KIK  LN+    + G++ E +EK  DRD+ MSA EA  +G+VD+VL+ R
Sbjct: 219 ILKIKHTLNDRLAFHTGQSIERIEKDTDRDNFMSAEEAQAYGLVDEVLVKR 269


>gi|260905351|ref|ZP_05913673.1| Endopeptidase Clp [Brevibacterium linens BL2]
          Length = 219

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 67/208 (32%), Positives = 106/208 (50%), Gaps = 2/208 (0%)

Query: 6   CAKKDSEDVFLGLVPMVVE--QTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQL 63
            A +++ +      P   +  ++    R  +    L   R V   G++ D     I ++L
Sbjct: 5   IAHQNAHNRPTSPSPRFADGDESTTTTRIPESQRMLYAYRSVVFNGELRDENGMEIISRL 64

Query: 64  LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           + L AE+   +I L+INSPGG V    AI D ++ +   + T   G AAS G  +L  G 
Sbjct: 65  ILLSAEDSHSDIHLWINSPGGSVPMMHAIADVIETLPNDVVTVAFGWAASAGQFVLMMGT 124

Query: 124 KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
            G R ALP+ARILLHQ S G  G A+DIE  + D+  ++  +     +  GKTYE V + 
Sbjct: 125 PGKRLALPHARILLHQGSSGIGGAAADIELQSGDLRTVRDTVLHRIAEATGKTYERVFED 184

Query: 184 LDRDHIMSASEACDWGVVDKVLMSRIDI 211
             RD   +  +A D+G++D+++ S  D+
Sbjct: 185 SLRDRWFTVEQALDYGLIDRIVESPADL 212


>gi|313619414|gb|EFR91128.1| Clp protease [Listeria innocua FSL S4-378]
          Length = 190

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 67/191 (35%), Positives = 118/191 (61%), Gaps = 1/191 (0%)

Query: 22  VVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS 81
           + E T     +  +  +L+  R V + G+I   +A  +  QLL LE+ +    I+++INS
Sbjct: 1   MAENTKNENITNILTQKLIDTRTVLIYGEINQELAEDVSKQLLLLESISND-PITIFINS 59

Query: 82  PGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
            GG V AG  I+D ++FIKP +     G  AS G  +  A EK  R++LPN R ++HQP+
Sbjct: 60  QGGHVEAGDTIHDMIKFIKPTVKIVGTGWVASAGITIYLAAEKENRYSLPNTRYMIHQPA 119

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
           GG  GQ+++IE  A++I++++ R+N +  +  G++YE++ K  DR+  +S +EA D+G+V
Sbjct: 120 GGVQGQSTEIEIEAKEIIRMRERINRLIAEATGQSYEKISKDTDRNFWLSVNEAKDYGIV 179

Query: 202 DKVLMSRIDIE 212
           ++++ +R  I+
Sbjct: 180 NEIIQNRDGIK 190


>gi|319791980|ref|YP_004153620.1| endopeptidase clp [Variovorax paradoxus EPS]
 gi|315594443|gb|ADU35509.1| Endopeptidase Clp [Variovorax paradoxus EPS]
          Length = 197

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 61/182 (33%), Positives = 107/182 (58%)

Query: 31  RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGM 90
           R+  +  +  K R + + G I D +A  +  +L+ L+A+N +K I + ++SPGG + +G 
Sbjct: 16  RNSYLEEKAFKSRTLLIFGSITDSVAADVTRRLIALDADNAEKPIDILVSSPGGHLESGD 75

Query: 91  AIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASD 150
           AI+D ++FI  P++    G   S  + L  A  +  R  LPN R L+HQPSGG  GQA+D
Sbjct: 76  AIHDIVRFISAPVNMIGTGWVGSAATHLFLAAPRERRVCLPNTRFLIHQPSGGAGGQATD 135

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           I   AQ+I+K ++R+     +  GK  + V   ++RD  +SA EA ++G+V +++  + +
Sbjct: 136 IAIQAQEIIKARQRIAHEIARETGKHIDVVLADIERDRWLSAEEAVEYGLVSRIIQRKTE 195

Query: 211 IE 212
           ++
Sbjct: 196 LK 197


>gi|16800172|ref|NP_470440.1| ATP-dependent Clp protease proteolytic subunit [Listeria innocua
           Clip11262]
 gi|16413562|emb|CAC96334.1| lin1103 [Listeria innocua Clip11262]
          Length = 190

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 67/191 (35%), Positives = 118/191 (61%), Gaps = 1/191 (0%)

Query: 22  VVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS 81
           + E  N    +  +  +L+  R V + G+I   +A  +  QLL LE+ +    I+++INS
Sbjct: 1   MAENKNNENITNILTQKLIDTRTVLIYGEINQELAEDVSKQLLLLESISND-PITIFINS 59

Query: 82  PGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
            GG V AG  I+D ++FIKP +     G  AS G  +  A EK  R++LPN R ++HQP+
Sbjct: 60  QGGHVEAGDTIHDMIKFIKPTVKIVGTGWVASAGITIYLAAEKENRYSLPNTRYMIHQPA 119

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
           GG  GQ+++IE  A++I++++ R+N +  +  G++YE++ K  DR+  +S +EA D+G+V
Sbjct: 120 GGVQGQSTEIEIEAKEIIRMRERINRLIAEATGQSYEKISKDTDRNFWLSVNEAKDYGIV 179

Query: 202 DKVLMSRIDIE 212
           ++++ +R  I+
Sbjct: 180 NEIIQNRDGIK 190


>gi|295814148|gb|ADG35701.1| ATP-dependent clp protease proteolytic subunit clpP [Fucus
           ceranoides]
          Length = 133

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 57/121 (47%), Positives = 84/121 (69%)

Query: 89  GMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQA 148
           G+AIYDTMQFI   ++T C G AASMG+ LL AG +G R +LPN+RI++HQP GG  GQA
Sbjct: 1   GLAIYDTMQFIPCDVATVCFGMAASMGAFLLGAGTQGKRKSLPNSRIMIHQPLGGAQGQA 60

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           +DIE  A++I+  KR LN    +   +  +++E+  DRD  M+  EA D+G++D+V+ ++
Sbjct: 61  ADIEIQAKEILYTKRLLNRYMSEYTDQPVDKIEEDTDRDFFMTPQEALDYGLIDEVIKTK 120

Query: 209 I 209
            
Sbjct: 121 T 121


>gi|322708247|gb|EFY99824.1| ATP-dependent Clp protease proteolytic subunit 1 [Metarhizium
           anisopliae ARSEF 23]
          Length = 152

 Score =  172 bits (437), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 71/144 (49%), Positives = 98/144 (68%), Gaps = 7/144 (4%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VT+GMAIYDTM +IK P+ST C+G AASM ++LL+ GE G RFALP++ I+
Sbjct: 1   MYINSPGGSVTSGMAIYDTMTYIKSPVSTVCVGGAASMAAILLAGGEAGKRFALPHSSIM 60

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK-------TYEEVEKTLDRDHI 189
           +HQP GG  GQASDI  +A  I +I+ + N+I   +  K       + EEV   ++RD  
Sbjct: 61  IHQPLGGTRGQASDILIYANQIQRIREQSNKIMQYHLNKAKGTDKYSLEEVNDMMERDKY 120

Query: 190 MSASEACDWGVVDKVLMSRIDIEE 213
           +S  EA + GV+D++L  R D +E
Sbjct: 121 LSVDEALELGVIDEILTKRTDKKE 144


>gi|295814150|gb|ADG35702.1| ATP-dependent clp protease proteolytic subunit clpP [Fucus spiralis
           var. platycarpus]
 gi|295814152|gb|ADG35703.1| ATP-dependent clp protease proteolytic subunit clpP [Fucus spiralis
           var. platycarpus]
 gi|295814154|gb|ADG35704.1| ATP-dependent clp protease proteolytic subunit clpP [Fucus spiralis
           var. platycarpus]
 gi|295814156|gb|ADG35705.1| ATP-dependent clp protease proteolytic subunit clpP [Fucus spiralis
           var. platycarpus]
 gi|295814158|gb|ADG35706.1| ATP-dependent clp protease proteolytic subunit clpP [Fucus
           spiralis]
 gi|295814160|gb|ADG35707.1| ATP-dependent clp protease proteolytic subunit clpP [Fucus
           spiralis]
 gi|295814162|gb|ADG35708.1| ATP-dependent clp protease proteolytic subunit clpP [Fucus
           spiralis]
 gi|295814164|gb|ADG35709.1| ATP-dependent clp protease proteolytic subunit clpP [Fucus
           spiralis]
 gi|295814166|gb|ADG35710.1| ATP-dependent clp protease proteolytic subunit clpP [Fucus
           spiralis]
 gi|295814168|gb|ADG35711.1| ATP-dependent clp protease proteolytic subunit clpP [Fucus spiralis
           var. platycarpus]
 gi|295814170|gb|ADG35712.1| ATP-dependent clp protease proteolytic subunit clpP [Fucus spiralis
           var. platycarpus]
 gi|295814172|gb|ADG35713.1| ATP-dependent clp protease proteolytic subunit clpP [Fucus spiralis
           var. platycarpus]
 gi|295814174|gb|ADG35714.1| ATP-dependent clp protease proteolytic subunit clpP [Fucus spiralis
           var. platycarpus]
 gi|295814176|gb|ADG35715.1| ATP-dependent clp protease proteolytic subunit clpP [Fucus spiralis
           var. platycarpus]
 gi|295814178|gb|ADG35716.1| ATP-dependent clp protease proteolytic subunit clpP [Fucus
           vesiculosus]
 gi|295814180|gb|ADG35717.1| ATP-dependent clp protease proteolytic subunit clpP [Fucus
           vesiculosus]
 gi|295814182|gb|ADG35718.1| ATP-dependent clp protease proteolytic subunit clpP [Fucus
           vesiculosus]
 gi|295814184|gb|ADG35719.1| ATP-dependent clp protease proteolytic subunit clpP [Fucus
           vesiculosus]
          Length = 133

 Score =  172 bits (437), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 57/121 (47%), Positives = 84/121 (69%)

Query: 89  GMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQA 148
           G+AIYDTMQFI   ++T C G AASMG+ LL AG +G R +LPN+RI++HQP GG  GQA
Sbjct: 1   GLAIYDTMQFIPCDVATVCFGMAASMGAFLLGAGTQGKRKSLPNSRIMIHQPLGGAQGQA 60

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           +DIE  A++I+  KR LN    +   +  +++E+  DRD  M+  EA D+G++D+V+ ++
Sbjct: 61  ADIEIQAKEILYTKRLLNRYMSEYTDQPVDKIEEDTDRDFFMTPQEALDYGLIDEVIKTK 120

Query: 209 I 209
            
Sbjct: 121 T 121


>gi|54023138|ref|YP_117380.1| putative Clp protease proteolytic subunit [Nocardia farcinica IFM
           10152]
 gi|54014646|dbj|BAD56016.1| putative Clp protease proteolytic subunit [Nocardia farcinica IFM
           10152]
          Length = 201

 Score =  172 bits (436), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 67/171 (39%), Positives = 102/171 (59%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
            +LL  RI+ + G ++D   TL+  QLL L AEN +  ISL+I+SPGG V A +AI D M
Sbjct: 16  EQLLSRRILVLDGPLDDDNGTLLATQLLTLAAENDEAPISLWIHSPGGSVPAMLAIRDVM 75

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQ 156
           + +   +ST  +G A S G  LLSAG +G RFALP+AR+L+HQ S G  G A D+E  A 
Sbjct: 76  RLVPCEVSTLALGLACSAGQFLLSAGSRGKRFALPHARVLMHQGSAGIGGTAVDVEVQAD 135

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           D+      +  +   + G+ Y+ + +    D   +A++A ++G +D ++ S
Sbjct: 136 DLRHTVETVLGLIAADTGQPYDRIYEDSLHDRWFTAAQAKEYGFIDHIVDS 186


>gi|46371973|gb|AAS90621.1| putative ATP-dependent Clp protease (proteolytic subunit)
           [uncultured soil bacterium]
          Length = 254

 Score =  172 bits (436), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 68/202 (33%), Positives = 113/202 (55%), Gaps = 2/202 (0%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRL-LKERIVFVTGQIEDHMATLICAQLLFLEAE 69
            E      + +  E+    ER   I  RL  K R V + G+I   +A   C +L+ L AE
Sbjct: 53  DEPARSSPMDVNEEKPEAPERLDAITDRLAFKSRFVMLFGEINHAVARATCTRLIAL-AE 111

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
                +++ I+SPGG V +G AI+D ++F++ P++T   G  AS G+ +  A  K  R  
Sbjct: 112 ESDGPVTVLISSPGGHVESGDAIHDIIRFVRAPVTTVGTGWVASAGTHVFLAAPKERRVC 171

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           LPN R ++HQP GG  G A+DI   A++I++ + R+ ++  K  G++ ++V   ++RD  
Sbjct: 172 LPNTRFMIHQPGGGAGGPATDIAIQAKEILRTRERIAKVISKQTGQSLQKVLADMERDFW 231

Query: 190 MSASEACDWGVVDKVLMSRIDI 211
           MSA EA  +G+V KV+ +  ++
Sbjct: 232 MSAEEAIVYGLVSKVIETSREL 253


>gi|224009932|ref|XP_002293924.1| catalytic subunit of clp protein superfamily [Thalassiosira
           pseudonana CCMP1335]
 gi|220970596|gb|EED88933.1| catalytic subunit of clp protein superfamily [Thalassiosira
           pseudonana CCMP1335]
          Length = 225

 Score =  171 bits (435), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 60/175 (34%), Positives = 95/175 (54%), Gaps = 9/175 (5%)

Query: 42  ERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVV---------TAGMAI 92
            RIV++   +   +  L+ A+LL+L  E+  K +++YINS G            T   AI
Sbjct: 36  NRIVYIGMPLVPAVTELVIAELLYLNYEDQSKPVTMYINSSGTTTANGQAVGFETEAFAI 95

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIE 152
            D M++I+PP++T  +GQA    +++LS G KG R ALPNA I L+QP     GQASDI 
Sbjct: 96  ADVMKYIRPPVNTVAIGQAFGAAAMILSQGRKGGRAALPNATIRLNQPRSQARGQASDIA 155

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
             A+++   ++   ++  +  GK    V     R   +   EA ++G++DKV+ S
Sbjct: 156 IKAREVAHNRKTTCDLIAQATGKPLSVVMNDCQRVKYLQPDEAVEYGLIDKVIRS 210


>gi|290489442|gb|ADD31105.1| clp protease proteolytic subunit protein [Lonicera japonica]
          Length = 216

 Score =  171 bits (434), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 58/195 (29%), Positives = 105/195 (53%), Gaps = 3/195 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP +  Q +  E     D+Y+ L +   +F+  +I+  ++  I   ++FL  E    ++ 
Sbjct: 5   VPKIPFQISGDEEASWVDVYNGLYRRGFLFIVQEIDTELSNQIVGLMVFLSLEGEVNDLY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            +I+S GG +  G AI+D + ++ P + T  +G+ ASM SL+++ G    R A P++RI+
Sbjct: 65  FFISSLGGSMVDGFAIFDMLVYLPPTMHTLSIGECASMASLIVAGGTFTQRIAFPHSRIM 124

Query: 137 LHQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP+   F     +     ++  +++  + E Y K  G+    VE  L+RD  MSA EA
Sbjct: 125 IHQPNTFPFETPTGETFLEIKEFCRLRALVGEAYAKITGQPLWVVEIDLERDIFMSAQEA 184

Query: 196 CDWGVVDKVLMSRID 210
            D+G+VD V   +++
Sbjct: 185 KDYGIVDLVASGKLE 199


>gi|51599007|ref|YP_073195.1| ATP-dependent Clp protease proteolytic subunit [Borrelia garinii
           PBi]
 gi|51573578|gb|AAU07603.1| ATP-dependent Clp protease proteolytic component [Borrelia garinii
           PBi]
          Length = 198

 Score =  171 bits (434), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 66/175 (37%), Positives = 107/175 (61%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           +LK R + + G+I   ++ L   ++L LE  + +K I +YI+S GG + AG AI++ ++F
Sbjct: 20  ILKSRSIVIAGEITKDVSRLFQEKILLLETLDFKKPIFVYIDSEGGDIDAGFAIFNMIRF 79

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           +KP + T  +G  AS  +L+  A +   RF+LP AR LLHQP  GF G A+DIE +  ++
Sbjct: 80  VKPKVFTVGVGLVASAAALIFLAAKLENRFSLPFARYLLHQPLSGFKGVATDIEIYTNEL 139

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
            K+K+ LN I  K  G+    +EK  DRD  + +S A  +G+V +V+ ++  +EE
Sbjct: 140 NKVKKELNNIISKETGQEISTIEKDTDRDFWLDSSAAKKYGLVFEVVETKCQLEE 194


>gi|147800090|emb|CAN70935.1| hypothetical protein VITISV_032484 [Vitis vinifera]
          Length = 229

 Score =  171 bits (433), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 65/178 (36%), Positives = 104/178 (58%), Gaps = 13/178 (7%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            + P V+  T  G    D+ + L + RI+F+   I   +A  + +QL+ L A +   +I 
Sbjct: 41  PVAPSVM--TPGGP--LDLSTVLFRSRIIFIGQPINSMVAQRVISQLVTLAAIDEDADIL 96

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y+N PGG   + +AIYD M +IKP + T C G AAS G+LLL+ GEKGMR+A+PNARI+
Sbjct: 97  MYLNCPGGSTYSVLAIYDCMAWIKPKVGTVCFGVAASQGALLLAGGEKGMRYAMPNARIM 156

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
                    G   D+ R   + V+ + +++++Y    G+  E+V++  +RD  +SASE
Sbjct: 157 ---------GHVEDVRRQVNEAVQSRHKIDKMYAAFTGQPLEQVQQYTERDRFLSASE 205


>gi|82752460|ref|XP_727310.1| ATP-dependent Clp protease proteolytic subunit [Plasmodium yoelii
           yoelii str. 17XNL]
 gi|23483092|gb|EAA18875.1| ATP-dependent Clp protease, proteolytic subunit ClpP, putative
           [Plasmodium yoelii yoelii]
          Length = 337

 Score =  171 bits (433), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 63/171 (36%), Positives = 104/171 (60%), Gaps = 1/171 (0%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
             K+RI+++T +I    +  +  QLL+L+  N   +I +YINSPGG +  G+AI D   +
Sbjct: 157 FFKKRIIYLTDEINKKTSDELIKQLLYLDNINHN-DIKIYINSPGGSINEGLAILDIFNY 215

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           IK  I T   G  ASM S++L++G+KG R + PN RI++HQP G   G   DIE   ++I
Sbjct: 216 IKSDIQTISFGLVASMASVILASGKKGKRKSFPNCRIMIHQPLGNAFGHPHDIEIQTKEI 275

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           + +K+ L     K   +  + +EK  DRD+ M++ EA  +G++D+V+ +++
Sbjct: 276 LYLKKLLYYYLSKFTNQNEQTIEKNSDRDYYMNSFEAKKYGIIDQVIETKL 326


>gi|51971563|dbj|BAD44446.1| ClpP protease complex subunit ClpR3 [Arabidopsis thaliana]
          Length = 330

 Score =  171 bits (433), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 63/193 (32%), Positives = 106/193 (54%), Gaps = 12/193 (6%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           E   R     D+ S LL  RIV++   +   +  L+ A+L++L+  +P++ I +YINS G
Sbjct: 112 EHRPRTPPP-DLPSMLLDGRIVYIGMPLVPAVTELVVAELMYLQWLDPKEPIYIYINSTG 170

Query: 84  GV---------VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
                       + G AIYD++  +K  + T C+G A     LLLSAG KG RF +P+A+
Sbjct: 171 TTRDDGETVGMESEGFAIYDSLMQLKNEVHTVCVGAAIGQACLLLSAGTKGKRFMMPHAK 230

Query: 135 ILLHQPSGGFSG--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
            ++ +P    SG   ASD+   A++++  +  L E+  K+ G + E V   + R + M A
Sbjct: 231 AMIQRPRVPSSGLMPASDVLIRAKEVITNRDILVELLSKHTGNSVETVANVMRRPYYMDA 290

Query: 193 SEACDWGVVDKVL 205
            +A ++GV+D++L
Sbjct: 291 PKAKEFGVIDRIL 303


>gi|56783783|dbj|BAD81195.1| putative ATP-dependent Clp protease proteolytic subunit [Oryza
           sativa Japonica Group]
 gi|125569868|gb|EAZ11383.1| hypothetical protein OsJ_01248 [Oryza sativa Japonica Group]
          Length = 306

 Score =  170 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 76/218 (34%), Positives = 118/218 (54%), Gaps = 17/218 (7%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
            DV   +VP  +  T   +   D+ S L K RIV++   +   +  L+ A+ L+L+ ++ 
Sbjct: 77  RDVVAMVVP-FLRGTAWQQPPPDLASFLYKNRIVYLGMCLVPSVTELMLAEFLYLQYDDA 135

Query: 72  QKEISLYINSPG--------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           +K I LYINS G        G  T   AIYD M+++K PI T C+G A    +LLL+AG 
Sbjct: 136 EKPIYLYINSTGTTKNGEKLGYETEAFAIYDAMRYVKVPIFTLCVGNAWGEAALLLAAGA 195

Query: 124 K-GMRFALP----NARILLH---QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK 175
           K  + FA      N  ILL    QP G F GQA+D++   ++I  +K  + ++  ++ GK
Sbjct: 196 KVSVVFASKKYEDNDLILLTFNVQPIGRFQGQATDVDIARKEIRNVKIEMIKLLSRHIGK 255

Query: 176 TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
           + EE+ + + R    S SEA D+G++DKVL +    E+
Sbjct: 256 SVEEIAQDIKRPKYFSPSEAVDYGIIDKVLYNEKSQED 293


>gi|219118446|ref|XP_002179995.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408252|gb|EEC48186.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 309

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 63/191 (32%), Positives = 108/191 (56%), Gaps = 5/191 (2%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           VP +    +  +   DI + + ++R +F++  I++  A  + + +L+L  E+P+  IS+Y
Sbjct: 59  VPYMPPGADYAQ-FIDIEAAMYRDRTLFISTFIDEETANSLISIMLYLRNESPKDPISMY 117

Query: 79  INSPGGVVTAGMAIYDTMQF--IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            N PG ++   +A+YD +Q    K  I T  +G  A MG+ L SAG KG R A+PN+R L
Sbjct: 118 FNVPGALLRPSLALYDLIQQTKQKCEIETVNLGLCAGMGAFLCSAGTKGKRNAMPNSRFL 177

Query: 137 LHQPSGG--FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           L +      F GQA+DI    +++ K   R+ E   +  G+  E +++ L RD  +S+ E
Sbjct: 178 LQRTGMDEVFRGQATDIALEVRNVKKWNDRMEEELSQMTGQPLERIQQDLKRDFYLSSDE 237

Query: 195 ACDWGVVDKVL 205
           A  +G++D+VL
Sbjct: 238 AVQYGLIDRVL 248


>gi|110456699|gb|ABG74808.1| ATP-dependent protease catalytic subunit [Jasminum abyssinicum]
          Length = 259

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 70/181 (38%), Positives = 113/181 (62%), Gaps = 1/181 (0%)

Query: 25  QTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG 84
           +  + E   D+Y++L +  I+F+  +IE  +A  I A +L+L  ++P + +  +INSPGG
Sbjct: 46  KAEKEEVWTDLYTKLYQLGILFLGEEIEFVVANEIIAAMLYLNMQDPLQRLYFFINSPGG 105

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS-GG 143
            V  G+AIYD M++I   I T C GQAASM S+LL++G KG R A P++ +++HQP+   
Sbjct: 106 AVHDGLAIYDAMKYIDQEIHTICYGQAASMASVLLASGAKGHRGAYPHSMVMMHQPALAP 165

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
             G+   + R    +  +K R+ +IYV    K    +E+TL+RDH MS  EA ++G++DK
Sbjct: 166 TRGRLQRLVRERNCLNILKERIIDIYVCETRKDRLVIERTLERDHYMSPIEAREYGIIDK 225

Query: 204 V 204
           +
Sbjct: 226 I 226


>gi|326494016|dbj|BAJ85470.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326495362|dbj|BAJ85777.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511045|dbj|BAJ91870.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 337

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 59/174 (33%), Positives = 98/174 (56%), Gaps = 11/174 (6%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS---------PGGVVTAGMAIY 93
           RIV++   +   +  LI AQL++L+  N  +   +YINS         P G+ T G AIY
Sbjct: 135 RIVYIGMPLVPAVTELIVAQLMYLDWMNSSEPAYIYINSTGTARDDGEPVGMETEGFAIY 194

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG--QASDI 151
           D M  +K  + T C+G AA    L+L+AG+KG R+  P+A+ L+ QP     G  QASD+
Sbjct: 195 DAMMRMKTEVHTLCIGAAAGHACLVLAAGKKGKRYMFPHAKALIQQPRIPSYGMMQASDV 254

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
              A+++V  +  L ++  ++ G   E+++K +     M + +A ++GV+DK+L
Sbjct: 255 VIRAKEVVHNRNTLVKLLARHTGNPPEKIDKVMRGPFYMDSLKAKEFGVIDKIL 308


>gi|289621889|emb|CBI51800.1| putative ATP-dependent Clp protease, proteolytic subunit [Sordaria
           macrospora]
          Length = 225

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 72/206 (34%), Positives = 114/206 (55%), Gaps = 40/206 (19%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
            +P + E T+ G             R + + G I+D  +  I AQLL+LE++NP K I++
Sbjct: 42  PMPYITEVTSGGW------------RTLCLNGAIDDTTSAAIVAQLLWLESDNPDKPITM 89

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG V++G+AIYDTM +IK P+ST C+G AASM ++LL  GE G R+ALP++ ++ 
Sbjct: 90  YINSPGGEVSSGLAIYDTMTYIKSPVSTVCVGAAASMAAVLLIGGEPGKRYALPHSTVM- 148

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT-------YEEVEKTLDRDHIM 190
                               I +I+ ++N+I   +  K+          +   ++RD  +
Sbjct: 149 --------------------IQRIREQINKIVQSHINKSFGYEKYDLAAISDMMERDKYL 188

Query: 191 SASEACDWGVVDKVLMSRIDIEEKSK 216
           +A EA + GVVD++L  R+  E + K
Sbjct: 189 TAEEAVELGVVDQILDRRVKDEAEKK 214


>gi|145343690|ref|XP_001416446.1| chloroplast Clp protease, subunit of ClpP peptidase complex
           [Ostreococcus lucimarinus CCE9901]
 gi|144576671|gb|ABO94739.1| chloroplast Clp protease, subunit of ClpP peptidase complex
           [Ostreococcus lucimarinus CCE9901]
          Length = 308

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 56/179 (31%), Positives = 97/179 (54%), Gaps = 11/179 (6%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG---------VVTAGMAIY 93
           RIV++   +   +  LI ++LL+L+  + +K   +YINS G            T   AI+
Sbjct: 108 RIVYIGMPLVPAVTELIVSELLYLQYTDQKKPCYIYINSTGCTRADGEVVGFETEATAIF 167

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG--QASDI 151
           DTM++I   I T   G A     +LLSAG+KG R+  P+A  +LHQP    +G  QA+++
Sbjct: 168 DTMKYIGNEIYTVGTGVAIGQACMLLSAGDKGKRYMTPHATAMLHQPRVPSTGERQATEL 227

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
               ++ +  K+ L +I  +  G +  +++K + R   M+A +A ++G+VDKV+    +
Sbjct: 228 NIKWRETLAQKKSLLDILSQTTGHSVAKLDKDMQRPLYMTAKDAIEYGIVDKVIERESN 286


>gi|85090147|ref|XP_958279.1| ATP-dependent Clp protease proteolytic subunit 1 [Neurospora crassa
           OR74A]
 gi|28919624|gb|EAA29043.1| ATP-dependent Clp protease proteolytic subunit 1 [Neurospora crassa
           OR74A]
 gi|28950018|emb|CAD70773.1| related to endopeptidase Clp [Neurospora crassa]
          Length = 158

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 64/147 (43%), Positives = 96/147 (65%), Gaps = 7/147 (4%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG V++G+AIYDTM +IK P+ST C+G AASM ++LL  GE G R+ LP++ ++
Sbjct: 1   MYINSPGGEVSSGLAIYDTMTYIKSPVSTVCVGAAASMAAVLLIGGEPGKRYVLPHSTVM 60

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK-------TYEEVEKTLDRDHI 189
           +HQP GG  GQASDI  +A  I +I+ ++N+I   +  K           +   ++RD  
Sbjct: 61  VHQPLGGTRGQASDILIYANQIQRIREQINKIVQSHVNKAFGYEKYDLAAISDMMERDKY 120

Query: 190 MSASEACDWGVVDKVLMSRIDIEEKSK 216
           ++A EA + GVVD++L  R+  E + K
Sbjct: 121 LTAEEAVELGVVDQILDRRVKDEAEKK 147


>gi|110456662|gb|ABG74781.1| ATP-dependent protease catalytic subunit [Jasminum leratii]
          Length = 261

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 70/181 (38%), Positives = 113/181 (62%), Gaps = 1/181 (0%)

Query: 25  QTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG 84
           +  + E   D+Y++L +  I+F+  +IE  +A  I A +L+L  ++P + +  +INSPGG
Sbjct: 48  KAEKEEVWTDLYTKLYQLGILFLGEEIEFVVANEIIAAMLYLNMQDPLQRLYFFINSPGG 107

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS-GG 143
            V  G+AIYD M++I   I T C GQAASM S+LL++G KG R A P++ +++HQP+   
Sbjct: 108 AVHDGLAIYDAMKYIDQEIHTICYGQAASMASVLLASGAKGHRGAYPHSMVMMHQPALAP 167

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
             G+   + R    +  +K R+ +IYV    K    +E+TL+RDH MS  EA ++G++DK
Sbjct: 168 TRGRLQRLVRERNCLNILKERIIDIYVCETRKDRLVIERTLERDHYMSPIEAREYGIIDK 227

Query: 204 V 204
           +
Sbjct: 228 I 228


>gi|257065503|ref|YP_003145175.1| protease subunit of ATP-dependent protease [Slackia
           heliotrinireducens DSM 20476]
 gi|256793156|gb|ACV23826.1| protease subunit of ATP-dependent protease [Slackia
           heliotrinireducens DSM 20476]
          Length = 197

 Score =  169 bits (428), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 67/197 (34%), Positives = 120/197 (60%), Gaps = 4/197 (2%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
           ++     P +++++NRG  ++ I  ++L +R +   G I+      +C QL +L+ E+P 
Sbjct: 2   NISSADTPNIIKESNRGYDTFRIVDKMLADREIACIGPIDAAQTDSLCLQLRYLQKEDPA 61

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
            EI+++ NSPGG V +G+AIYDTM+ +  P+ T C+G A SM +LL  +G++  R  LP+
Sbjct: 62  AEITIFFNSPGGEVQSGLAIYDTMRAVSCPVRTVCLGMAGSMAALLFISGDQ--RDMLPH 119

Query: 133 ARILLHQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           +R+++H P   GG SG A +++  A ++++ +    EI  ++ GKT +EV +T   D   
Sbjct: 120 SRVMIHDPLLQGGVSGSALEVKTIADNLMRTRDITAEIIAEHTGKTIDEVLETTAHDAYF 179

Query: 191 SASEACDWGVVDKVLMS 207
            A EA  +G+ D+V+ +
Sbjct: 180 EAEEAVAYGLADRVIRT 196


>gi|110456731|gb|ABG74834.1| ATP-dependent protease catalytic subunit [Jasminum subhumile]
          Length = 229

 Score =  169 bits (428), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 62/185 (33%), Positives = 109/185 (58%), Gaps = 4/185 (2%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
             D+Y+RL +E ++F+  +I+  ++  I + +L+L   +P ++  ++INSPGG +  GM 
Sbjct: 38  WVDVYTRLYQEGVLFLADEIDSELSNEIISAMLYLNMVDPTQDQYVFINSPGGSILYGMG 97

Query: 92  IYDTMQFIKPP--ISTFCMGQAASMGSLLLSAGEKGMRFALPNA-RILLHQPS-GGFSGQ 147
           IYDTM+F+     + T C G A SM SLLL  G +  R A P+A R+++HQP+      +
Sbjct: 98  IYDTMEFVSADADVHTICFGVARSMASLLLVGGVENKRMAFPHAIRVMIHQPAVSRIVAR 157

Query: 148 ASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           +  + R  + +  +KR +   Y +  G+    +E+ ++RDH MSA EA  +G+VD+++  
Sbjct: 158 SKRLLREVEFLKSLKRDIIAEYAERTGQPLWVIERDIERDHFMSAREAKGYGIVDEIVDE 217

Query: 208 RIDIE 212
              +E
Sbjct: 218 FPTLE 222


>gi|330816937|ref|YP_004360642.1| ATP-dependent Clp protease proteolytic component [Burkholderia
           gladioli BSR3]
 gi|327369330|gb|AEA60686.1| ATP-dependent Clp protease proteolytic component [Burkholderia
           gladioli BSR3]
          Length = 201

 Score =  168 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 67/190 (35%), Positives = 106/190 (55%), Gaps = 1/190 (0%)

Query: 25  QTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG 84
           Q   G+    +  +  + R V V G I D +A+    +LL L+AE+    I + ++SPGG
Sbjct: 13  QPAPGQPGAFLEEKAFRARAVLVFGTITDALASETVRRLLALDAESA-APIDMIVSSPGG 71

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
            + +G AI+D ++FI  P++    G   S  + L     +  RF LP  R L+HQPSGG 
Sbjct: 72  HLESGDAIHDVVRFIDAPVNMIGTGWVGSAATHLYLGAARARRFCLPQTRFLIHQPSGGA 131

Query: 145 SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           SGQASDI   AQ+IVK + R+  +  + CG+    V + ++RD  M A EA  +G+V +V
Sbjct: 132 SGQASDIAIQAQEIVKARERIAAVIARECGQPLARVLEDIERDRWMPAQEALRYGLVARV 191

Query: 205 LMSRIDIEEK 214
           +  R ++ ++
Sbjct: 192 VERRAELADR 201


>gi|315302638|ref|ZP_07873441.1| Clp protease [Listeria ivanovii FSL F6-596]
 gi|313628992|gb|EFR97322.1| Clp protease [Listeria ivanovii FSL F6-596]
          Length = 190

 Score =  168 bits (426), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 66/178 (37%), Positives = 112/178 (62%), Gaps = 1/178 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +  +L+  R V + G+I   +A  +  QLL LE+    + I+++INS GG V AG  I+D
Sbjct: 14  LTQKLIDTRTVLIYGEINQELAEDVSKQLLLLESI-SDEPITIFINSQGGHVEAGDTIHD 72

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            ++FIKP +     G  AS G  +  A EK  RF+LPN R ++HQP+GG  GQ+++IE  
Sbjct: 73  MIKFIKPTVKVVGTGWVASAGITIYLAAEKENRFSLPNTRYMIHQPAGGVQGQSTEIEIE 132

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
           A++I++++ R+N +     G+TYE++ K  DR+  +S +EA D+G+V +++ +R  ++
Sbjct: 133 AKEIIRMRERINRLXXXXTGQTYEKISKDTDRNFWLSVNEAKDYGIVSEIIENRDGLK 190


>gi|255030852|ref|ZP_05302803.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes LO28]
          Length = 191

 Score =  168 bits (426), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 62/162 (38%), Positives = 106/162 (65%), Gaps = 1/162 (0%)

Query: 55  MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASM 114
           +A  +  QLL LE+ +    I+++INS GG V AG  I+D ++FIKP +     G  AS 
Sbjct: 1   LAEDVSKQLLLLESISND-PITIFINSQGGHVEAGDTIHDMIKFIKPTVKVVGTGWVASA 59

Query: 115 GSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCG 174
           G  +  A EK  RF+LPN R ++HQP+GG  GQ+++IE  A++I++++ R+N +  +  G
Sbjct: 60  GITIYLAAEKENRFSLPNTRYMIHQPAGGVQGQSTEIEIEAKEIIRMRERINRLIAEATG 119

Query: 175 KTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           ++YE++ K  DR+  +S +EA D+G+V++++ +R  ++ K K
Sbjct: 120 QSYEQISKDTDRNFWLSVNEAKDYGIVNEIIENRDGLKIKPK 161


>gi|226505068|ref|NP_001149025.1| LOC100282645 [Zea mays]
 gi|195624074|gb|ACG33867.1| ATP-dependent Clp protease proteolytic subunit-like [Zea mays]
          Length = 339

 Score =  168 bits (426), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 59/174 (33%), Positives = 100/174 (57%), Gaps = 11/174 (6%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS---------PGGVVTAGMAIY 93
           RIV++   +   +  LI AQL++LE  N ++ + +YINS         P G+ + G AIY
Sbjct: 137 RIVYIGMPLVPAVTELIVAQLMYLEWMNSKEPVYIYINSTGTARDDGEPVGMESEGFAIY 196

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG--QASDI 151
           D M  +K  I T C+G AA    L+L+AG+KG R+  P+A+ ++ QP     G  QASD+
Sbjct: 197 DAMMRMKTEIHTLCIGAAAGHACLVLAAGKKGKRYMFPHAKAMIQQPRIPSYGMMQASDV 256

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
              A+++V  +  L ++  ++ G   E+++K +     M + +A ++GV+DK+L
Sbjct: 257 VIRAKEVVHNRNTLVKLLARHTGNPPEKIDKVMRGPFYMDSLKAKEFGVIDKIL 310


>gi|221059998|ref|XP_002260644.1| ATP-dependent Clp protease [Plasmodium knowlesi strain H]
 gi|193810718|emb|CAQ42616.1| ATP-dependent Clp protease, putative [Plasmodium knowlesi strain H]
          Length = 1101

 Score =  167 bits (424), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 65/190 (34%), Positives = 109/190 (57%), Gaps = 11/190 (5%)

Query: 29  GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV--- 85
            +    I S LL +RI+F++  +  H++  I +QLL+LE E+ +K I LYINS G +   
Sbjct: 64  NQHGISIPSMLLSKRIIFLSSPVYPHISEQIISQLLYLEYESKRKPIHLYINSTGDLENN 123

Query: 86  -------VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
                  +T  ++I D +++I   + T+C+G+A  +  +L S+G+KG RF+L N+   L+
Sbjct: 124 KIINLNGITDVISIIDVIEYISSDVYTYCLGKAYGISCILASSGKKGFRFSLKNSSFCLN 183

Query: 139 QPSGGF-SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           Q        QA++IE   ++I+  KR++ EI   N GK    +E+ L+RD   SA EA +
Sbjct: 184 QSYSVIPFNQATNIEIQNKEIMNTKRKVVEIIANNTGKDKSHIEQILERDRYFSAPEAVE 243

Query: 198 WGVVDKVLMS 207
           + +VD +L  
Sbjct: 244 FNLVDHILEK 253


>gi|168025572|ref|XP_001765308.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683627|gb|EDQ70036.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 298

 Score =  167 bits (423), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 58/174 (33%), Positives = 98/174 (56%), Gaps = 11/174 (6%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV---------VTAGMAIY 93
           RIV++   +   +  L+ A+LL+L+  +P++ I +YINS G            T G AIY
Sbjct: 86  RIVYIGMPLVPAVTELVIAELLYLQYADPRQPIYVYINSTGTSRADGETVGLETEGFAIY 145

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQ--ASDI 151
           DT+  ++  I T  +G A     LLL++G+KGMR+ +P+A  ++ QP    +GQ  A D+
Sbjct: 146 DTLMNVRNQIQTVAVGAAIGQACLLLASGDKGMRYMMPHATAMIQQPRLPSTGQMSAIDV 205

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
              A++++  +  L  +  K+ G  YE+V K + R   M+  +A ++GV DK+L
Sbjct: 206 HIRAKELINNRDTLVGLLAKHTGNPYEKVAKVMQRPFYMNPKKAVEFGVADKIL 259


>gi|290489472|gb|ADD31120.1| clp protease proteolytic subunit protein [Plumbago auriculata]
          Length = 194

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 61/190 (32%), Positives = 105/190 (55%), Gaps = 3/190 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V       E     D+Y+RL + R +F+  ++   +   +   +++L  E+  KE+ 
Sbjct: 5   VPKVPFLLPENEDATWVDVYNRLYRSRFLFLGEELNTEIGNFLMGLIIYLGIEDETKELF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L++N PGG V  G+ + D M+ + P ++T C+G AASMGS +L AGE   R A P+AR++
Sbjct: 65  LFLNCPGGWVLPGLGVVDAMEIVTPDVNTICIGIAASMGSFILVAGEITKRAAFPHARVM 124

Query: 137 LHQPSGGFSGQASDI-ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP   F    S I     ++I+ ++  +   Y++  G+    + + L+RD  +SA+EA
Sbjct: 125 IHQPKSAFYEDQSGICMMEIEEIIILRENITNFYIQRTGQPLWVIMQDLERDAFLSATEA 184

Query: 196 CDWGVVDKVL 205
               +VD +L
Sbjct: 185 QAHRIVDIIL 194


>gi|168013355|ref|XP_001759365.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689295|gb|EDQ75667.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 296

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 59/176 (33%), Positives = 100/176 (56%), Gaps = 11/176 (6%)

Query: 41  KERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------GVVTAGMA 91
             RIV++   +   +  L+ A+LL+L+  +P++ I +YINS G         G+ T G A
Sbjct: 82  NSRIVYIGMPLVPAVTELVIAELLYLQYADPRQPIYVYINSTGTARADGETVGLETEGFA 141

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQ--AS 149
           IYDT+  ++  I T  +G A     LLL++G+KGMR+ +P+A  ++ QP    +GQ  A 
Sbjct: 142 IYDTLMNVRNQIQTVAVGAAIGQACLLLASGDKGMRYMMPHATAMIQQPRLPSTGQMSAI 201

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           D+   A++++  +  L  +  K+ G   E+V K ++R   M+  +A D+GV DK+L
Sbjct: 202 DVHIRAKELINNRDTLVGLLAKHTGNPVEKVAKVMERPFYMNPKKAVDFGVADKIL 257


>gi|108708097|gb|ABF95892.1| ATP-dependent Clp protease proteolytic subunit, putative, expressed
           [Oryza sativa Japonica Group]
 gi|218192812|gb|EEC75239.1| hypothetical protein OsI_11536 [Oryza sativa Indica Group]
 gi|222624913|gb|EEE59045.1| hypothetical protein OsJ_10812 [Oryza sativa Japonica Group]
          Length = 341

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 58/174 (33%), Positives = 99/174 (56%), Gaps = 11/174 (6%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS---------PGGVVTAGMAIY 93
           RIV++   +   +  L+ AQL++LE  N ++ + +YINS         P G+ + G AIY
Sbjct: 139 RIVYIGMPLVPAVTELVVAQLMYLEWMNSKEPVYIYINSTGTARDDGEPVGMESEGFAIY 198

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG--QASDI 151
           D M  +K  I T C+G AA    L+L+AG+KG R+  P+A+ ++ QP     G  QASD+
Sbjct: 199 DAMMRMKTEIHTLCIGAAAGHACLVLAAGKKGKRYMFPHAKAMIQQPRIPSYGMMQASDV 258

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
              A+++V  +  L  +  ++ G   E+++K +     M + +A ++GV+DK+L
Sbjct: 259 VIRAKEVVHNRNTLVRLLARHTGNPPEKIDKVMRGPFYMDSLKAKEFGVIDKIL 312


>gi|302817400|ref|XP_002990376.1| hypothetical protein SELMODRAFT_131372 [Selaginella moellendorffii]
 gi|302825342|ref|XP_002994294.1| hypothetical protein SELMODRAFT_138455 [Selaginella moellendorffii]
 gi|300137825|gb|EFJ04638.1| hypothetical protein SELMODRAFT_138455 [Selaginella moellendorffii]
 gi|300141938|gb|EFJ08645.1| hypothetical protein SELMODRAFT_131372 [Selaginella moellendorffii]
          Length = 235

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 64/176 (36%), Positives = 96/176 (54%), Gaps = 11/176 (6%)

Query: 41  KERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV---------VTAGMA 91
             RIV+V   +   +  L+ A+LL+L+  +P   I +YINS G            T G A
Sbjct: 21  NSRIVYVGMPLVPAVTELVIAELLYLQYSDPTLPIYMYINSTGTSRADGETVGMETEGFA 80

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQ--AS 149
           I+DTMQ +K  I T  +G A     LLL+AG KG R+ LP+A  ++ QP     GQ  A 
Sbjct: 81  IHDTMQLVKNEIHTVGVGAAIGQACLLLAAGTKGKRYMLPHATAMIQQPRMPSMGQMPAI 140

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           D+   A++++  +  L E+  ++ G   E+V K + R + MS  +A D+GVVDK+L
Sbjct: 141 DLHLRAKEVIHNRDTLVELLAEHTGNPVEKVAKVMRRPYYMSPKKAMDFGVVDKIL 196


>gi|224103735|ref|XP_002313173.1| predicted protein [Populus trichocarpa]
 gi|222849581|gb|EEE87128.1| predicted protein [Populus trichocarpa]
          Length = 391

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 67/191 (35%), Positives = 92/191 (48%), Gaps = 10/191 (5%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS---------PGG 84
           D+ S LL  RI ++   I   +  L+ AQ ++L+ E+P K I LYINS           G
Sbjct: 173 DLPSLLLDARICYLGMPIVPAVTELLVAQFMYLDYEDPSKPIYLYINSSGTQNEKMETVG 232

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS-GG 143
             T   AI D M + K  I T   G A    ++LLS G KG R   PN+   L+ P    
Sbjct: 233 SETEAYAIADIMSYCKSTIYTVNCGMAYGQAAMLLSLGAKGYRALQPNSSTKLYLPKVNR 292

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            SG A D+   A+++        E+  K  GK  EE+ K + R   + A EA D+G+ DK
Sbjct: 293 SSGAAVDMWIKAKELDANTEYYIELLAKGTGKPKEELVKDIQRPKYLKAQEAIDYGIADK 352

Query: 204 VLMSRIDIEEK 214
           +L S  D  EK
Sbjct: 353 LLSSNDDAFEK 363


>gi|125525351|gb|EAY73465.1| hypothetical protein OsI_01344 [Oryza sativa Indica Group]
          Length = 284

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 74/214 (34%), Positives = 116/214 (54%), Gaps = 17/214 (7%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
             +VP  +  T   +   D+ S L K RIV++   +   +  L+ A+ L+L+ ++ +K I
Sbjct: 59  AAVVP-FLSVTACHQPPPDLASFLYKYRIVYLGMCLLPSVTELMLAEFLYLQYDDAEKPI 117

Query: 76  SLYINSPG--------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK-GM 126
            LYINS G        G  T   AIYD M+++K PI T C+G A    +LLL+AG K  +
Sbjct: 118 YLYINSTGTTKNGEKLGYETEAFAIYDAMRYVKVPIFTLCVGNAWGEAALLLAAGAKVSV 177

Query: 127 RFALP----NARILLH---QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
            FA      N  ILL    QP G F GQA+D++   ++I  +K  + ++  ++ GK+ EE
Sbjct: 178 VFASKKYEDNDLILLTFNVQPIGRFQGQATDVDIARKEIRNVKIEMIKLLSRHIGKSVEE 237

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
           + + + R    S SEA D+G++DKVL +    E+
Sbjct: 238 IAQDIKRPKYFSPSEAVDYGIIDKVLYNEKSQED 271


>gi|308800244|ref|XP_003074903.1| ClpP2 Clp protease proteolytic subunit, probable (IC) [Ostreococcus
           tauri]
 gi|119358826|emb|CAL52171.2| ClpP2 Clp protease proteolytic subunit, probable (IC) [Ostreococcus
           tauri]
          Length = 297

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 58/176 (32%), Positives = 94/176 (53%), Gaps = 11/176 (6%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG---------VVTAGMAIY 93
           RIV++   +   +  LI ++LL+L+  + +K   +YINS G            T   AIY
Sbjct: 97  RIVYIGMPLVPAVTELIVSELLYLQYADQKKPCYIYINSTGCTRADGEVVGFETEATAIY 156

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG--QASDI 151
           DTM++I   I T   G A     +LLSAG+KG RF  P+A  +LHQP    +G  QA+++
Sbjct: 157 DTMKYIGNEIYTVGTGVAVGQACVLLSAGDKGKRFMTPHATAMLHQPRVPSTGERQATEL 216

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
                + +  K+ L  +  K  G + E+++K + R   M+A++A  +GV DK++  
Sbjct: 217 NIKWHETLAQKKTLLNVLSKTTGHSVEKLDKDMRRPLYMTAADAIQYGVADKIVTR 272


>gi|225428973|ref|XP_002264383.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296083061|emb|CBI22465.3| unnamed protein product [Vitis vinifera]
          Length = 388

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 67/191 (35%), Positives = 96/191 (50%), Gaps = 10/191 (5%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------G 84
           D+ S LL  RI ++   I   +A L+ AQ ++L+ +NP K I LYINS G         G
Sbjct: 169 DLPSLLLDARICYLGMPIVPAVAELLVAQFMWLDFDNPSKPIYLYINSTGTQNEKMETVG 228

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS-GG 143
             T   AI D+M + K  + T   G A    ++LLS G KG R   PNA   L+ P    
Sbjct: 229 SETEAYAIADSMAYCKSDVYTVNCGTAYGQAAMLLSVGAKGYRGLQPNASTKLYLPKVNR 288

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            SG   D+   A+++        E+  K  GKT EE++K ++R   + A EA D+G+ DK
Sbjct: 289 SSGATIDMWIKAKELDANSEYYIELLAKGTGKTKEEIKKDVERPKYLQAQEAIDYGLADK 348

Query: 204 VLMSRIDIEEK 214
           ++ S     EK
Sbjct: 349 IISSMDPAYEK 359


>gi|67968315|dbj|BAE00215.1| ATP-dependent Clp protease proteolytic subunit [Selaginella
           uncinata]
          Length = 206

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 64/191 (33%), Positives = 101/191 (52%), Gaps = 3/191 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V  + +  E     D ++R  +ER+      ++D  A            EN  ++  
Sbjct: 5   VPKVSFRISGEEDMVRIDTHNRPYRERLPSSGQHMDDETANQPIRITTHPNGENRSQDTH 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            Y N PGG V+AG+++YDTMQ   P + T  +G AASMG  + + GE   R ALP+AR++
Sbjct: 65  SYTNPPGGAVSAGISVYDTMQSAVPDVHTIRVGLAASMGPSISTGGEITRRMALPHARVM 124

Query: 137 LHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           +HQP S  + GQA +    A++I+K++  + +I+ +  GK    V K ++RD    A EA
Sbjct: 125 IHQPASSFYEGQAGERLMEAEEILKLRDCITKIHARKTGKPLWVVSKDMERDVFTPAREA 184

Query: 196 CDWGVVDKVLM 206
              G+ D V+ 
Sbjct: 185 RVHGITDPVVT 195


>gi|302795281|ref|XP_002979404.1| hypothetical protein SELMODRAFT_153292 [Selaginella moellendorffii]
 gi|300153172|gb|EFJ19812.1| hypothetical protein SELMODRAFT_153292 [Selaginella moellendorffii]
          Length = 243

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 64/176 (36%), Positives = 96/176 (54%), Gaps = 11/176 (6%)

Query: 41  KERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV---------VTAGMA 91
             RIV+V   +   +  L+ A+LL+L+  +P   I +YINS G            T G A
Sbjct: 29  NSRIVYVGMPLVPAVTELVIAELLYLQYSDPTLPIYMYINSTGTSRADGETVGMETEGFA 88

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQ--AS 149
           I+DTMQ +K  I T  +G A     LLL+AG KG R+ LP+A  ++ QP     GQ  A 
Sbjct: 89  IHDTMQLVKNEIHTVGVGAAIGQACLLLAAGTKGKRYMLPHATAMIQQPRMPSMGQMPAI 148

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           D+   A++++  +  L E+  ++ G   E+V K + R + MS  +A D+GVVDK+L
Sbjct: 149 DLHLRAKEVIHNRDTLVELLAEHTGNPVEKVAKVMRRPYYMSPKKAMDFGVVDKIL 204


>gi|193875736|gb|ACF24504.1| chloroplast ATP-dependent Clp protease proteolytic subunit 2
           [Gymnochlora stellata]
          Length = 240

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 63/185 (34%), Positives = 106/185 (57%), Gaps = 3/185 (1%)

Query: 33  YDIYSR---LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
           YDI      L K RI+F TG+I D ++  I   L++  + + +  I   INSPGG +++G
Sbjct: 30  YDISEVDTILKKNRIIFCTGEINDLVSNTIVNHLVYFSSLSDKDAIKFIINSPGGNISSG 89

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
           +AIYD +   K  ++T+ +G +AS+G  LL  G    RF+ PN+RI++HQP GG  G   
Sbjct: 90  LAIYDAITISKLTLNTYSIGISASIGCFLLCIGSPNRRFSFPNSRIMIHQPFGGIQGTPI 149

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           DIE   ++++  +  LN +   +   + E++EK  D +   +  EA  +G++DK+L+ + 
Sbjct: 150 DIEIQTKELIIQRSNLNYLIACHTNNSIEKIEKDTDFEKYFTPHEALRYGIIDKILIKKN 209

Query: 210 DIEEK 214
              +K
Sbjct: 210 KTIKK 214


>gi|116198401|ref|XP_001225012.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
 gi|88178635|gb|EAQ86103.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
          Length = 155

 Score =  166 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 64/145 (44%), Positives = 99/145 (68%), Gaps = 7/145 (4%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG V++G+AIYDTM +IK P+ST C+G AASM ++L+  GE G R+ALP++ I+
Sbjct: 1   MYINSPGGEVSSGLAIYDTMTYIKSPVSTVCVGGAASMAAILMIGGEPGKRYALPHSSIM 60

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTY--EE-----VEKTLDRDHI 189
           +HQP GG  GQA+DI  +A  I +++ +LN I  K+  K+   E+     V   ++RD  
Sbjct: 61  VHQPLGGTRGQAADILIYATQIQRLREQLNRIVQKHINKSLGYEKYDMQAVNDMMERDKY 120

Query: 190 MSASEACDWGVVDKVLMSRIDIEEK 214
           ++A EA + G++D++L  R   ++K
Sbjct: 121 LTAEEAKEMGIIDEILHKREKGDDK 145


>gi|149010631|ref|ZP_01832002.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae SP19-BS75]
 gi|149013224|ref|ZP_01834010.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae SP19-BS75]
 gi|147762975|gb|EDK69920.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae SP19-BS75]
 gi|147765112|gb|EDK72041.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae SP19-BS75]
          Length = 147

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 74/123 (60%), Positives = 100/123 (81%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMI 120

Query: 138 HQP 140
           HQP
Sbjct: 121 HQP 123


>gi|224543457|ref|ZP_03683996.1| hypothetical protein CATMIT_02666 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523584|gb|EEF92689.1| hypothetical protein CATMIT_02666 [Catenibacterium mitsuokai DSM
           15897]
          Length = 178

 Score =  165 bits (419), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 74/174 (42%), Positives = 105/174 (60%), Gaps = 1/174 (0%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D  S     R++++T +I D +A  IC Q+  L A    ++I+L+I SPGG VTAG+AI 
Sbjct: 4   DCISEEFSRRVIYITDEITDSLAADICCQMNHLAA-VSNEDITLWIMSPGGSVTAGLAIL 62

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           DTM  ++  I T  MGQAASM +++ S+G KG R+   NA +++HQ   GFSGQ +DI R
Sbjct: 63  DTMNSVECDIKTIVMGQAASMAAVIASSGTKGKRYIGTNAWMMIHQALAGFSGQTTDILR 122

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
            AQ I +I   L  I  +NC    E + K  DRD+ M+A  A  +G+VD +  S
Sbjct: 123 SAQHIEEINNNLYSILARNCSAHIETIAKDCDRDYHMNARTAIVYGLVDHIYQS 176


>gi|325972142|ref|YP_004248333.1| ATP-dependent Clp protease proteolytic subunit [Spirochaeta sp.
           Buddy]
 gi|324027380|gb|ADY14139.1| ATP-dependent Clp protease proteolytic subunit [Spirochaeta sp.
           Buddy]
          Length = 191

 Score =  165 bits (419), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 70/188 (37%), Positives = 108/188 (57%), Gaps = 1/188 (0%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
           E+     +   I  +LLK R + ++G+I    A ++  QLL LE E+ +  I ++INSPG
Sbjct: 5   EEKKPAVQDPQIQEKLLKTRSILLSGEINKETAEVMIKQLLVLEGESNE-PIKIFINSPG 63

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           G V AG AI+D  +FI  P++   MG  AS  +L+L A     R ALPN+  L+HQP  G
Sbjct: 64  GDVDAGYAIFDMARFITAPVTMIGMGLVASAAALVLLAVPVERRIALPNSTYLIHQPMSG 123

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
             G A+DIE HA  + K++ +L+ +     GK+ E+V    +RDH ++A EA  +G+V  
Sbjct: 124 MRGVATDIEIHALHLEKLRLKLDALIAAETGKSAEDVRLDTERDHWLTAEEAKAYGLVSN 183

Query: 204 VLMSRIDI 211
           ++  R  +
Sbjct: 184 IVSHRSKL 191


>gi|242035789|ref|XP_002465289.1| hypothetical protein SORBIDRAFT_01g035610 [Sorghum bicolor]
 gi|241919143|gb|EER92287.1| hypothetical protein SORBIDRAFT_01g035610 [Sorghum bicolor]
          Length = 339

 Score =  165 bits (419), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 57/174 (32%), Positives = 99/174 (56%), Gaps = 11/174 (6%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS---------PGGVVTAGMAIY 93
           RIV++   +   +  L+ AQL++LE  N ++ + +YINS         P G+ + G AIY
Sbjct: 137 RIVYIGMPLVPAVTELVVAQLMYLEWMNSKEPVYIYINSTGTARDDGEPVGMESEGFAIY 196

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG--QASDI 151
           D M  +   I T C+G AA    L+L+AG+KG R+  P+A+ ++ QP     G  QASD+
Sbjct: 197 DAMMRMNTEIHTLCIGAAAGHACLVLAAGKKGKRYMFPHAKAMIQQPRIPSYGMMQASDV 256

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
              A+++V  +  L ++  ++ G   E+++K +     M + +A ++GV+DK+L
Sbjct: 257 VIRAKEVVHNRNTLVKLLARHTGNPPEKIDKVMRGPFYMDSLKAKEFGVIDKIL 310


>gi|63055028|gb|AAY29052.1| predicted ATP-dependent Clp protease proteolytic subunit 1
           [Bifidobacterium longum subsp. suis]
 gi|63055034|gb|AAY29055.1| predicted ATP-dependent Clp protease proteolytic subunit 1
           [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 140

 Score =  165 bits (419), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 62/129 (48%), Positives = 91/129 (70%)

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG +TAGMAIYDTMQ I+P ++T  +G  ASMG  LLS+G KG R+   +AR+L+H
Sbjct: 1   INSPGGSITAGMAIYDTMQLIEPDVATVGLGMCASMGQFLLSSGTKGKRYLTSHARVLMH 60

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  G A+D+  +A+ I+ +K+ ++E+  +  G T EE+ +  + DH  +A EA D+
Sbjct: 61  QPSGGIGGTATDVRINAELIMDMKKTMSELTAEQTGHTLEEIYRDNEYDHWFTAQEALDY 120

Query: 199 GVVDKVLMS 207
           G VDK++ +
Sbjct: 121 GFVDKLVTT 129


>gi|255639455|gb|ACU20022.1| unknown [Glycine max]
          Length = 364

 Score =  165 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 66/221 (29%), Positives = 101/221 (45%), Gaps = 18/221 (8%)

Query: 2   SFEGCAKKDSEDVFLGLVPMVVEQTNRGE-----RSYDIYSRLLKERIVFVTGQIEDHMA 56
           S  G  K D+    + +    + +  RG         D+ S LL  RI ++   I   + 
Sbjct: 117 SLSGMGKSDASKYSMSV---SMYRGGRGTGRPKTAPPDLPSLLLDARICYLGMPIVPAVT 173

Query: 57  TLICAQLLFLEAENPQKEISLYINS---------PGGVVTAGMAIYDTMQFIKPPISTFC 107
            LI AQ ++L+ +NP K I LYINS           G  T   +I D M ++K  + T  
Sbjct: 174 ELIVAQFMWLDYDNPSKPIYLYINSSGTLNEKNETVGSETEAYSIADMMSYVKADVYTVN 233

Query: 108 MGQAASMGSLLLSAGEKGMRFALPNARILLHQPS-GGFSGQASDIERHAQDIVKIKRRLN 166
            G A    ++LLS G KG R   PN+   L+ P     SG   D+   A+++        
Sbjct: 234 CGMAFGQAAMLLSLGTKGYRAVQPNSSTKLYLPKVNRSSGAVIDMWIKAKELEANTEYYI 293

Query: 167 EIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           E+  K  GK+ EE+ K + R   + A +A D+G+ DK++ S
Sbjct: 294 ELLAKGTGKSKEEIAKDVQRPKYLQAQDAIDYGIADKIIDS 334


>gi|18402863|ref|NP_564560.1| CLPR1; serine-type endopeptidase [Arabidopsis thaliana]
 gi|75315328|sp|Q9XJ35|CLPR1_ARATH RecName: Full=ATP-dependent Clp protease proteolytic
           subunit-related protein 1, chloroplastic; Short=ClpR1;
           AltName: Full=nClpP5; Flags: Precursor
 gi|8569101|gb|AAF76446.1|AC015445_13 Identical to nClpP5 from Arabidopsis thaliana gb|AB022330 and
           contains prenyltransferase PF|00432 and CLP protease
           PF|00574 domains. ESTs gb|H76908, gb|AA605567,
           gb|T21932, gb|T22976 come from this gene
 gi|5360595|dbj|BAA82069.1| nClpP5 [Arabidopsis thaliana]
 gi|15010752|gb|AAK74035.1| At1g49970/F2J10_5 [Arabidopsis thaliana]
 gi|23308343|gb|AAN18141.1| At1g49970/F2J10_5 [Arabidopsis thaliana]
 gi|332194380|gb|AEE32501.1| ATP-dependent Clp protease proteolytic subunit-related protein 1
           [Arabidopsis thaliana]
          Length = 387

 Score =  165 bits (418), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 62/191 (32%), Positives = 95/191 (49%), Gaps = 10/191 (5%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------G 84
           D+ S LL  RI ++   I   +  L+ AQ ++L+ +NP K I LYINSPG         G
Sbjct: 171 DLPSLLLDARICYLGMPIVPAVTELLVAQFMWLDYDNPTKPIYLYINSPGTQNEKMETVG 230

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS-GG 143
             T   AI DT+ + K  + T   G A    ++LLS G+KG R   P++   L+ P    
Sbjct: 231 SETEAYAIADTISYCKSDVYTINCGMAFGQAAMLLSLGKKGYRAVQPHSSTKLYLPKVNR 290

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            SG A D+   A+++        E+  K  GK+ E++ + + R   + A  A D+G+ DK
Sbjct: 291 SSGAAIDMWIKAKELDANTEYYIELLAKGTGKSKEQINEDIKRPKYLQAQAAIDYGIADK 350

Query: 204 VLMSRIDIEEK 214
           +  S+    EK
Sbjct: 351 IADSQDSSFEK 361


>gi|302807086|ref|XP_002985274.1| hypothetical protein SELMODRAFT_424284 [Selaginella moellendorffii]
 gi|300147102|gb|EFJ13768.1| hypothetical protein SELMODRAFT_424284 [Selaginella moellendorffii]
          Length = 357

 Score =  165 bits (418), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 64/183 (34%), Positives = 93/183 (50%), Gaps = 10/183 (5%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------G 84
           D+ S LL  RIV++   I   +  LI A++LFL+ +NP K I LYIN  G         G
Sbjct: 136 DLPSLLLDARIVYLGMAIVPAVTELIVAEMLFLDFDNPSKPIYLYINCSGTQNEKKESVG 195

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS-GG 143
             T   AI DTM ++K  + T   G A    ++LLS GEKG R   P++   L+ P    
Sbjct: 196 FETEAYAIADTMSYVKSKVYTVNCGMAFGQAAMLLSVGEKGFRAVQPSSSTKLYAPKVNQ 255

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            SG A D+   A+++    +   ++  K  GK  EE+ K + R     A EA ++G+ DK
Sbjct: 256 SSGSAIDMFIKAKELDSNTKYYIDLLAKGTGKPEEEIAKDIQRPKYFKAKEAVEYGLADK 315

Query: 204 VLM 206
           V+ 
Sbjct: 316 VIE 318


>gi|296284618|ref|ZP_06862616.1| ATP-dependent Clp protease proteolytic subunit [Citromicrobium
           bathyomarinum JL354]
          Length = 207

 Score =  165 bits (418), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 64/176 (36%), Positives = 100/176 (56%), Gaps = 1/176 (0%)

Query: 36  YSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDT 95
            ++ L  R V + G ++  MA  I  QLL+L+  + +  I + +NSPGG V +G  I+D 
Sbjct: 30  MNKFLDARTVLIFGGVDQKMAERISMQLLYLDHVSHE-PIRVIVNSPGGHVESGDTIHDL 88

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           + FI  P++    G  AS+ + +  +     RF LPN R L+HQPSGG  G ASDI   A
Sbjct: 89  ISFIASPVAMIGTGWVASIATHIFLSVPAERRFCLPNTRFLIHQPSGGARGMASDIAIQA 148

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           Q+IVK++ R+        G+  E+V K +DRD  M+  EA D+G++  V+ +  ++
Sbjct: 149 QEIVKMRERIAHKISDATGQPVEKVIKDIDRDFWMNTEEAKDYGILGTVINNAKEV 204


>gi|156101828|ref|XP_001616607.1| ATP-dependent Clp protease proteolytic subunit [Plasmodium vivax
           SaI-1]
 gi|148805481|gb|EDL46880.1| ATP-dependent Clp protease proteolytic subunit, putative
           [Plasmodium vivax]
          Length = 1104

 Score =  165 bits (418), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 65/190 (34%), Positives = 107/190 (56%), Gaps = 11/190 (5%)

Query: 29  GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV--- 85
            +    I S LL +RI+F++  +  H++  I +QLL+LE E+ +K I LYINS G +   
Sbjct: 59  NQHGISIPSMLLSKRIIFLSSPVYPHISEQIISQLLYLEYESKRKPIHLYINSTGDLENN 118

Query: 86  -------VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
                  +T  ++I D + +I   + T+C+G+A  +  +L S+G+KG RF+L N+   L+
Sbjct: 119 KIINLNGMTDVISIIDVIDYISSDVYTYCLGKAYGISCILASSGKKGFRFSLKNSSFCLN 178

Query: 139 QPSGGF-SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           Q        QA++IE   ++I+  KR++ EI   N GK    +E+ L+RD   SA EA  
Sbjct: 179 QSYSVIPFNQATNIEIQNKEIMNTKRKVVEIIANNTGKEKSHIERILERDRYFSAPEAVQ 238

Query: 198 WGVVDKVLMS 207
           + +VD +L  
Sbjct: 239 FNLVDHILER 248


>gi|297852688|ref|XP_002894225.1| hypothetical protein ARALYDRAFT_891918 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297340067|gb|EFH70484.1| hypothetical protein ARALYDRAFT_891918 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 387

 Score =  165 bits (417), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 62/191 (32%), Positives = 95/191 (49%), Gaps = 10/191 (5%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------G 84
           D+ S LL  RI ++   I   +  L+ AQ ++L+ +NP K I LYINSPG         G
Sbjct: 171 DLPSLLLDARICYLGMPIVPAVTELLVAQFMWLDYDNPTKPIYLYINSPGTQNEKMETVG 230

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS-GG 143
             T   AI DT+ + K  + T   G A    ++LLS G+KG R   P++   L+ P    
Sbjct: 231 SETEAYAIADTISYCKSDVYTINCGMAFGQAAMLLSLGKKGYRAVQPHSSTKLYLPKVNR 290

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            SG A D+   A+++        E+  K  GK+ E++ + + R   + A  A D+G+ DK
Sbjct: 291 SSGAAIDMWIKAKELDANTEYYIELLAKGTGKSKEQINEDIKRPKYLQAQAAIDYGIADK 350

Query: 204 VLMSRIDIEEK 214
           +  S+    EK
Sbjct: 351 IADSQDSSFEK 361


>gi|302340171|ref|YP_003805377.1| endopeptidase Clp [Spirochaeta smaragdinae DSM 11293]
 gi|301637356|gb|ADK82783.1| Endopeptidase Clp [Spirochaeta smaragdinae DSM 11293]
          Length = 203

 Score =  165 bits (417), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 63/177 (35%), Positives = 113/177 (63%), Gaps = 1/177 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +  ++++ R + ++G+I   +A  +  QL+ LEA++    I ++I+SPGG   AG AI+D
Sbjct: 26  LMEKMMETRTIILSGEINKELAERVVRQLILLEAQSDD-PIKVFIDSPGGDADAGFAIFD 84

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            M+FIKP + T  MG  AS  +++L A     R  LPN+  L+HQP  G  G A++IE H
Sbjct: 85  MMRFIKPDVYTIGMGLVASAAAIILLAAPVEHRIGLPNSHYLIHQPLSGIRGVATEIEIH 144

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           A+++ K++ R+N++  +  G+  ++VEK  DRD+ ++ +EA D+G++ +V  +R ++
Sbjct: 145 ARELQKLRIRINQLISEETGRDLDKVEKETDRDYWLNGTEAVDYGLISRVAKTRDEL 201


>gi|63055030|gb|AAY29053.1| predicted ATP-dependent Clp protease proteolytic subunit 1
           [Bifidobacterium pullorum]
          Length = 139

 Score =  165 bits (417), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 63/138 (45%), Positives = 92/138 (66%), Gaps = 1/138 (0%)

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG +TAGMAIYDTMQ I+P ++T  +G  ASMG  LLS+G KG R+   +AR+L+H
Sbjct: 1   INSPGGSITAGMAIYDTMQLIEPDVATVGLGMCASMGQFLLSSGAKGKRYLTSHARVLMH 60

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  G  +D+  +A+ I+ +KR L E+  +  G T EE+ +  + DH  +A +A ++
Sbjct: 61  QPSGGIGGTTTDVRINAELIMDMKRTLAELTAEQTGHTVEEIYRDNEYDHWFTAQQALEY 120

Query: 199 GVVDKVLMSRIDIEEKSK 216
           G VDK++ +  D    +K
Sbjct: 121 GFVDKIVTT-PDTMSATK 137


>gi|224003027|ref|XP_002291185.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220972961|gb|EED91292.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 186

 Score =  164 bits (416), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 58/176 (32%), Positives = 104/176 (59%), Gaps = 5/176 (2%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           + SR L++R +++   I++  +  I + LL+L+ E+ +++I LY+N PG ++   +AIYD
Sbjct: 11  LKSRQLRDRKLWIGQFIDEEASNSIISSLLYLQNESDKEDIELYLNIPGAILRPSLAIYD 70

Query: 95  TM---QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS--GGFSGQAS 149
           ++   +     IST  +   A MG+L+  AG KG R++LPNAR LL +      F GQA+
Sbjct: 71  SINELKADGCKISTTNIALCAGMGALIAGAGTKGRRYSLPNARYLLQKTGIDSVFRGQAT 130

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           DI     ++ K   ++N    +  G+  + +++ L RD  +S+ EA  +G++D+VL
Sbjct: 131 DIALEVANVKKWNEKINGEISRVTGQPIDRIDQDLKRDFYLSSEEAVRYGLIDEVL 186


>gi|194476564|ref|YP_002048743.1| ATP-dependent Clp protease proteolytic subunit [Paulinella
           chromatophora]
 gi|171191571|gb|ACB42533.1| ATP-dependent Clp protease proteolytic subunit [Paulinella
           chromatophora]
          Length = 193

 Score =  164 bits (416), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 67/166 (40%), Positives = 102/166 (61%), Gaps = 1/166 (0%)

Query: 42  ERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP 101
           +R +FV G I+D MA  + A LL++ A + +  I + I+S GG +T+   IYDT+ +I  
Sbjct: 2   QRTLFVAGDIDDTMANDLVAALLYMNAVSTKIPICINIDSRGGSITSAFTIYDTINYISA 61

Query: 102 PISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIERHAQDIVK 160
           P+ T C+  A SM   LL+AGEKG RFALPN+RI++ QP G     QASD+     ++  
Sbjct: 62  PVKTVCLSVAESMAVFLLAAGEKGQRFALPNSRIIMEQPIGNVDYRQASDLLIETIEMGF 121

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
            KRR+NE   +  G+   ++E+   R + MSA+E+  +G++D VL 
Sbjct: 122 TKRRINECMAEMTGQPMTKIEQDTSRRYHMSAAESVKYGLIDHVLT 167


>gi|63055024|gb|AAY29050.1| predicted ATP-dependent Clp protease proteolytic subunit 1
           [Bifidobacterium dentium]
 gi|63055032|gb|AAY29054.1| predicted ATP-dependent Clp protease proteolytic subunit 1
           [Bifidobacterium adolescentis]
          Length = 139

 Score =  164 bits (416), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 66/138 (47%), Positives = 94/138 (68%), Gaps = 1/138 (0%)

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG +TAGMAIYDTMQ I+P ++T  +G  ASMG  LLS+G KG RF   +AR+L+H
Sbjct: 1   INSPGGSITAGMAIYDTMQLIEPDVATVGLGMCASMGQFLLSSGTKGKRFLTSHARVLMH 60

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  G A+D+  +A+ I+ +K+ ++E+  +  G T EE+ +  + DH  +A EA ++
Sbjct: 61  QPSGGIGGTATDVRINAELIMDMKKTMSELTAEQTGHTVEEIYRDNEYDHWFTAQEALEY 120

Query: 199 GVVDKVLMSRIDIEEKSK 216
           G VDK L+S  D    +K
Sbjct: 121 GFVDK-LVSTHDTMSATK 137


>gi|229815654|ref|ZP_04445981.1| hypothetical protein COLINT_02705 [Collinsella intestinalis DSM
           13280]
 gi|229808884|gb|EEP44659.1| hypothetical protein COLINT_02705 [Collinsella intestinalis DSM
           13280]
          Length = 199

 Score =  164 bits (416), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 65/194 (33%), Positives = 113/194 (58%), Gaps = 4/194 (2%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P ++ +T+RG     IY  LL+ER + ++G+IE  MA+ +C  +LFLE E+P   I+L++
Sbjct: 8   PSILRETSRGLERTSIYDELLRERTLVISGEIEPLMASALCQHVLFLEREDPSSPITLFV 67

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           +SPGG V  G+AIYD ++ +  PI T C   AASMGS++  AG++  R   P+A +++H 
Sbjct: 68  SSPGGQVGPGLAIYDVLRSVSCPIRTVCGDLAASMGSIIFMAGDE--REMYPHASLMIHD 125

Query: 140 PSGG--FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           P       G A  ++  ++ +++ +R LN I  +  G   + ++    +D  + A  A D
Sbjct: 126 PLIPQGAGGSALALQETSKRLMERRRTLNTILAERSGLALKRIQSLTCKDTYLEAERALD 185

Query: 198 WGVVDKVLMSRIDI 211
            G   +++ SR ++
Sbjct: 186 LGFATRIIESRKEL 199


>gi|63055022|gb|AAY29049.1| predicted ATP-dependent Clp protease proteolytic subunit 1
           [Bifidobacterium magnum]
          Length = 139

 Score =  164 bits (415), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 62/129 (48%), Positives = 88/129 (68%)

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG +TAGMAIYDTMQ I+P ++T  +G  ASMG  LLS+G KG RF   +AR+L+H
Sbjct: 1   INSPGGSITAGMAIYDTMQLIEPDVATVGIGMCASMGQFLLSSGTKGKRFLTSHARVLMH 60

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  G  +D+   A+ I+ +K+ L E+  +  G T EE+ +  + DH  +A EA ++
Sbjct: 61  QPSGGIGGTTTDVRISAELIMNMKKTLAELTAEQTGHTVEEIYRDNEYDHWFTAQEALEY 120

Query: 199 GVVDKVLMS 207
           G VDK++ +
Sbjct: 121 GFVDKLVST 129


>gi|83645181|ref|YP_433616.1| ATP-dependent Clp protease proteolytic subunit ClpP [Hahella
           chejuensis KCTC 2396]
 gi|83633224|gb|ABC29191.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Hahella
           chejuensis KCTC 2396]
          Length = 194

 Score =  164 bits (415), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 72/190 (37%), Positives = 114/190 (60%), Gaps = 3/190 (1%)

Query: 23  VEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSP 82
            E+ ++ +R  + YS   K R VF+ G++   MA   C +L+ L AE+ +  I + I+SP
Sbjct: 8   PEKGSKTDRIEEQYS--FKSRFVFIFGEVNHEMAQATCQRLIAL-AEDSEDPIRVLISSP 64

Query: 83  GGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSG 142
           GG V +G AI+D ++FI+ P+ T   G  AS G+ +  A EK  R  LPN R ++HQP G
Sbjct: 65  GGHVESGDAIHDIIRFIRAPVITVGAGWVASAGTHIYLAAEKERRVCLPNTRFMIHQPGG 124

Query: 143 GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
           G  G ASDI   A++I++ + R+  +  +  GK +E+V   ++RD  MS  EA D+G+V 
Sbjct: 125 GAGGPASDIAIQAKEILRARERIAHVVARQTGKPFEKVLVDIERDFWMSPEEAMDYGIVS 184

Query: 203 KVLMSRIDIE 212
           +V+ S  D++
Sbjct: 185 RVVESYKDLQ 194


>gi|166235549|gb|ABY85464.1| ATP-dependent protease proteolytic subunit [Lychnis chalcedonica]
          Length = 222

 Score =  163 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 59/174 (33%), Positives = 96/174 (55%), Gaps = 1/174 (0%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
             D Y  L K R++F+       +   I   LLFL  E+  K+  L+I+S GG+ T  MA
Sbjct: 25  WLDFYHELHKRRLLFLCQDFNYEIVNQIAGLLLFLHLEDEDKQQHLFIHSRGGLATHAMA 84

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSG-GFSGQASD 150
           IYDTMQ +   + T  MG  ASM +LLL+ G    R A  + RI+LH P+   F G AS+
Sbjct: 85  IYDTMQLVTLGVHTIGMGVVASMATLLLAGGAYTKRNAYAHTRIMLHLPATRPFKGTASE 144

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           +   +++++++ + L EI  +  G+  + + K + +    SA EA  +G++D++
Sbjct: 145 VLGESKEVLRLTQTLVEILEERTGRPQDLIYKDMQKTTHFSAEEAQAYGIIDEI 198


>gi|164597829|ref|NP_084718.2| ATP-dependent Clp protease proteolytic subunit [Oenothera elata
           subsp. hookeri]
 gi|169142970|ref|YP_001687392.1| clp protease proteolytic subunit [Oenothera biennis]
 gi|172045753|sp|Q9MTJ8|CLPP_OENEH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|159793143|gb|ABW98897.1| clp protease proteolytic subunit [Oenothera biennis]
 gi|162423696|emb|CAB67184.2| clp protease proteolytic subunit [Oenothera elata subsp. hookeri]
 gi|166201963|gb|ABY84436.1| ATP-dependent protease proteolytic subunit [Oenothera elata subsp.
           hookeri]
          Length = 249

 Score =  163 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 60/191 (31%), Positives = 110/191 (57%), Gaps = 6/191 (3%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
             D+Y+ L + R +F+   I   +A  I   ++FL  ++  + +  +INSPGG+  AG+ 
Sbjct: 26  WVDLYNVLYRTRSIFLGDAIHFEVANHIAGLMIFLTIQDATQNLYFFINSPGGLAVAGLL 85

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG--QAS 149
           IYDTMQ++ PP+ T  +G  ASM S LL  GE   R   PN R+++HQP   ++   Q+ 
Sbjct: 86  IYDTMQYVTPPVYTLGLGVLASMASFLLVGGETSKRLMGPNGRVMIHQPESDYTHKDQSL 145

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV----L 205
           +++  + ++  I++ +  +Y++      E +   L+R++ M+A+EA  +G+VD +    L
Sbjct: 146 EVQLDSGEVEDIRKMVIRVYLERTRLPREVLNDHLERNYFMTATEAKYYGIVDDIGIQNL 205

Query: 206 MSRIDIEEKSK 216
           ++R+  E  S+
Sbjct: 206 LARLRAESASQ 216


>gi|194398443|ref|YP_002037392.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae G54]
 gi|194358110|gb|ACF56558.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae G54]
          Length = 147

 Score =  163 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 78/145 (53%), Positives = 109/145 (75%), Gaps = 2/145 (1%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y+N+PGG V+AG+AI  TM FIK  + T  MG AASMG+++ S+G KG RF LPNA  ++
Sbjct: 61  YVNTPGGSVSAGLAIVXTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMI 120

Query: 138 HQP--SGGFSGQASDIERHAQDIVK 160
           HQP    G   Q +D+   A+ ++K
Sbjct: 121 HQPMGGTGGGTQQTDMAIAAEHLLK 145


>gi|18267033|sp|P54414|CLPP_PARDE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
          Length = 199

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 62/168 (36%), Positives = 101/168 (60%), Gaps = 1/168 (0%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
           V V G I D +A    A LL L AE+  + I++ I+SPGG V +G  I+D ++FI+P + 
Sbjct: 33  VIVAGPITDKLAQRTVAHLLAL-AEDSDEPINMLISSPGGHVESGDMIHDVIKFIRPTVR 91

Query: 105 TFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRR 164
           T  +   AS G+L+    +K  R+ LPN R L+HQPS G  G ++D+   A+ +  ++ R
Sbjct: 92  TIGLAWVASAGALIFVGADKENRYCLPNTRFLIHQPSVGIGGTSTDMMIQAEQVRLMRDR 151

Query: 165 LNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
           LN+I+ +  G+  E +EK   RD  ++  EA D+G++ KV+ S  +++
Sbjct: 152 LNQIFAEATGQPVERIEKDTQRDFWLNTQEALDYGLLGKVIRSVDELK 199


>gi|302773329|ref|XP_002970082.1| hypothetical protein SELMODRAFT_65351 [Selaginella moellendorffii]
 gi|300162593|gb|EFJ29206.1| hypothetical protein SELMODRAFT_65351 [Selaginella moellendorffii]
          Length = 300

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 64/183 (34%), Positives = 93/183 (50%), Gaps = 10/183 (5%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------G 84
           D+ S LL  RIV++   I   +  LI A++LFL+ +NP K I LYIN  G         G
Sbjct: 115 DLPSLLLDARIVYLGMAIVPAVTELIVAEMLFLDFDNPSKPIYLYINCSGTQNEKKESVG 174

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS-GG 143
             T   AI DTM ++K  + T   G A    ++LLS GEKG R   P++   L+ P    
Sbjct: 175 FETEAYAIADTMSYVKSKVYTVNCGMAFGQAAMLLSVGEKGFRAVQPSSSTKLYAPKVNQ 234

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            SG A D+   A+++    +   ++  K  GK  EE+ K + R     A EA ++G+ DK
Sbjct: 235 SSGSAIDMFIKAKELDSNTKYYIDLLAKGTGKPEEEIAKDIQRPKYFKAKEAVEYGLADK 294

Query: 204 VLM 206
           V+ 
Sbjct: 295 VIE 297


>gi|168061571|ref|XP_001782761.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162665734|gb|EDQ52408.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 391

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 60/191 (31%), Positives = 93/191 (48%), Gaps = 10/191 (5%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------G 84
           D+ S LL  RI ++   I   +  LI A+LL+L+ +NP K I  YINS G         G
Sbjct: 170 DLPSLLLDARICYLGMAIVPAVTELIIAELLWLDFDNPTKPIYFYINSSGTQNEKKESIG 229

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS-GG 143
             T   AI DT++++K  + T   GQA    ++LLS GEKG R   P++   L+ P    
Sbjct: 230 FETEAYAIADTIRYVKSKVYTINCGQAFGQAAMLLSLGEKGYRALQPSSSTKLYSPKVNQ 289

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            SG ++D+    +++        ++     GK+ E +   + R       EA D+G+ DK
Sbjct: 290 SSGSSTDMWIKGKELDANTDYYIDLLASGTGKSKEVIANDIRRPRYFRPQEAVDYGLADK 349

Query: 204 VLMSRIDIEEK 214
           ++  R    EK
Sbjct: 350 IIEPRGIAMEK 360


>gi|307109710|gb|EFN57947.1| hypothetical protein CHLNCDRAFT_11056 [Chlorella variabilis]
          Length = 200

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 66/189 (34%), Positives = 109/189 (57%), Gaps = 9/189 (4%)

Query: 27  NRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG--- 83
              +   D+ S L KERIV+V   +   +  L+ A++L+L+ +NP + I +YINS G   
Sbjct: 10  ATDQTPPDLPSYLFKERIVYVGMSLVPAVTELVLAEMLYLQYDNPTRPIYMYINSTGVIK 69

Query: 84  -----GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
                G  +   AIYDTM++IKPP++T C+G A    ++LL+AGE G R ALP+  I++ 
Sbjct: 70  GSGKLGYESEAFAIYDTMRYIKPPVATVCVGSAFGEAAMLLAAGEAGRRAALPSTSIMIR 129

Query: 139 QPSGGFSG-QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           QP   ++  QASDI+ +  ++ K    +  +  K+ G   E+V + + R    +  EA +
Sbjct: 130 QPMQRYTQMQASDIDIYRNELRKTNAEVVRLLSKHTGHGEEQVARDISRPKYFNPYEAIE 189

Query: 198 WGVVDKVLM 206
           +G++D+VL 
Sbjct: 190 YGIIDRVLE 198


>gi|63055036|gb|AAY29056.1| predicted ATP-dependent Clp protease proteolytic subunit 1
           [Bifidobacterium cuniculi]
          Length = 137

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 64/137 (46%), Positives = 90/137 (65%)

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG +TAGMAIYDTMQ I+P ++T  +G  ASMG  LLS+G KG RF   +AR+L+H
Sbjct: 1   INSPGGSITAGMAIYDTMQLIEPDVATVGIGMCASMGQFLLSSGTKGKRFLTSHARVLMH 60

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  G  +D+   A+ I+ +K+ L E+  +  G T EE+ +  + DH  +A EA D+
Sbjct: 61  QPSGGIGGTTTDVRISAELIMNMKKTLAELTAEQTGHTVEEIYRDNEYDHWFTAQEALDY 120

Query: 199 GVVDKVLMSRIDIEEKS 215
           G VDK++ +   +  K 
Sbjct: 121 GFVDKLVSTHDTMTSKE 137


>gi|1002866|gb|AAC44552.1| ClpP [Paracoccus denitrificans]
          Length = 211

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 62/168 (36%), Positives = 101/168 (60%), Gaps = 1/168 (0%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
           V V G I D +A    A LL L AE+  + I++ I+SPGG V +G  I+D ++FI+P + 
Sbjct: 45  VIVAGPITDKLAQRTVAHLLAL-AEDSDEPINMLISSPGGHVESGDMIHDVIKFIRPTVR 103

Query: 105 TFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRR 164
           T  +   AS G+L+    +K  R+ LPN R L+HQPS G  G ++D+   A+ +  ++ R
Sbjct: 104 TIGLAWVASAGALIFVGADKENRYCLPNTRFLIHQPSVGIGGTSTDMMIQAEQVRLMRDR 163

Query: 165 LNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
           LN+I+ +  G+  E +EK   RD  ++  EA D+G++ KV+ S  +++
Sbjct: 164 LNQIFAEATGQPVERIEKDTQRDFWLNTQEALDYGLLGKVIRSVDELK 211


>gi|309322076|ref|YP_003933893.1| clp protease proteolytic subunit [Erodium texanum]
 gi|309322092|ref|YP_003933908.1| clp protease proteolytic subunit [Erodium texanum]
 gi|300069169|gb|ADJ66291.1| clp protease proteolytic subunit [Erodium texanum]
 gi|300069185|gb|ADJ66307.1| clp protease proteolytic subunit [Erodium texanum]
          Length = 208

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 56/183 (30%), Positives = 101/183 (55%), Gaps = 3/183 (1%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
             D+Y+ L +ER++F+   I+  +   + + ++FL  E       L INSPGG +  G++
Sbjct: 28  WMDLYNLLFRERVLFLGRAIKPEITNHLVSLMVFLTVERDDWSPMLLINSPGGYIFNGLS 87

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS-GGFSGQASD 150
           +YDT++       T C+G A SM S++L  G    R A P+AR+++HQP    F  +  +
Sbjct: 88  LYDTVRLSGAR--TLCVGTAVSMASVILVGGSDNKRAAFPHARVMIHQPRINKFEDEGPE 145

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           +   A+ ++ ++  + EIYV   G+ +  +   L+ D  ++ +EA  +G+VD +L+   D
Sbjct: 146 VIMEARIMLDLRHHIVEIYVLKTGQPFWVISVDLEVDTYLTPTEAKIYGLVDLILIKAKD 205

Query: 211 IEE 213
            EE
Sbjct: 206 AEE 208


>gi|145350842|ref|XP_001419805.1| chloroplast Clp protease, subunit of ClpP peptidase complex
           [Ostreococcus lucimarinus CCE9901]
 gi|144580037|gb|ABO98098.1| chloroplast Clp protease, subunit of ClpP peptidase complex
           [Ostreococcus lucimarinus CCE9901]
          Length = 210

 Score =  163 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 64/186 (34%), Positives = 110/186 (59%), Gaps = 4/186 (2%)

Query: 19  VP-MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           VP MV +    GE   D++  L ++RIVF+  +I++ +A   CA+LL LE+E+P+ EI +
Sbjct: 26  VPVMVPDGRGGGE---DVFGALARDRIVFLGTRIDEQVAAETCARLLQLESEDPEGEIRV 82

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           ++N   G      AI DTM+++  P+ST  +G  A    +L++AG+KG R+ + +ARI+L
Sbjct: 83  WVNCVAGTQYCVTAILDTMEYVSCPVSTVALGCVAGPPVMLVAAGDKGKRYGMSSARIVL 142

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
            QP GG +G + +++  A ++ +  +       K  G+  +E+E  + RD  M   EA D
Sbjct: 143 SQPLGGLAGTSIEVKIQATELNRNAKAQVGFIAKYTGRDADELEAMMARDTYMGVDEAID 202

Query: 198 WGVVDK 203
           +G++D 
Sbjct: 203 FGLIDH 208


>gi|63055026|gb|AAY29051.1| predicted ATP-dependent Clp protease proteolytic subunit 1
           [Bifidobacterium animalis subsp. animalis ATCC 25527]
          Length = 138

 Score =  163 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 62/129 (48%), Positives = 89/129 (68%)

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG +TAGMAIYDTMQ I+P ++T  +G  ASMG  LLS+G KG RF   +AR+L+H
Sbjct: 1   INSPGGSITAGMAIYDTMQLIEPDVTTVGIGMCASMGQFLLSSGTKGKRFLTSHARVLMH 60

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  G  +D+  +A+ I+ +K+ L E+  +  G T EE+ +  + DH  +A EA ++
Sbjct: 61  QPSGGIGGTTTDVRINAELIMDMKKTLGELTAEQTGHTIEEIYRDNEYDHWFTAEEALEY 120

Query: 199 GVVDKVLMS 207
           G VDK++ +
Sbjct: 121 GFVDKLVST 129


>gi|298707068|emb|CBJ29870.1| ATP-dependent Clp protease proteolytic subunit [Ectocarpus
           siliculosus]
          Length = 256

 Score =  163 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 64/198 (32%), Positives = 109/198 (55%), Gaps = 4/198 (2%)

Query: 20  PMVVEQTNRG--ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           PMV    +         +   L + RI+ V   I++  A  + A LL+ E  +P K+ISL
Sbjct: 6   PMVPYTRDGSTVATWMPVSQCLQQSRIIMVGKFIDEEYANQLIAMLLYHEKNDPNKKISL 65

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           Y N PG ++   +A+YDT+  + P +ST  +G A  M S L +AG++G R+ALPN+R L+
Sbjct: 66  YFNCPGALIRPALAVYDTLMHMGPELSTLNLGLATGMVSFLCAAGKRGQRYALPNSRFLM 125

Query: 138 HQ--PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
            +      + GQASDI    Q++++   ++ E   +  G T  ++ +   RD  +S++EA
Sbjct: 126 QRTGMEDPYQGQASDIGVEVQNVMRGNSKMEEALQRITGHTVAKIHEDFQRDFYLSSAEA 185

Query: 196 CDWGVVDKVLMSRIDIEE 213
             +G++D+VL+ R    +
Sbjct: 186 VQYGIIDEVLLPREKTRQ 203


>gi|332040877|gb|EGI77248.1| endopeptidase Clp [Hylemonella gracilis ATCC 19624]
          Length = 205

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 58/177 (32%), Positives = 101/177 (57%), Gaps = 1/177 (0%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +  +  K R + V G + D MA  +  +L+ L+A+   + I L ++SPGG + +G AI+D
Sbjct: 29  LEEKAFKTRTLLVFGTVTDAMAADVTRRLIALDAD-GDQPIHLLVSSPGGHLESGDAIHD 87

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            ++FI  P++    G   S  + L  A  +  R+ LPN R L+HQPSGG  G A++I   
Sbjct: 88  IVRFIAAPVNMIGTGWVGSAATHLYLAVPRARRYCLPNTRFLIHQPSGGAGGPATNIAIQ 147

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           A+++VK + R+     +  GK+ E V   ++ D  +SA EA D+G+V +++  + ++
Sbjct: 148 AREMVKARERIAATIARETGKSLEAVLTDIEHDRWLSAEEAVDYGLVSRIIERKSEL 204


>gi|9968665|emb|CAC06126.1| putative ATP-dependent clp serine protease proteolytic subunit
           [Pisum sativum]
          Length = 246

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 63/167 (37%), Positives = 99/167 (59%), Gaps = 4/167 (2%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P V+  T  G  + D+ S L + RI+F+   I   MA  + +QL+ L   +P  +I +YI
Sbjct: 83  PAVM--TPGG--AIDLSSVLFRNRIIFIGQPINAQMAQRVISQLVTLATIDPDADILMYI 138

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           N  GG   + +A+YD M +IKP + T C G AAS  +LLL+ GEKGMR+++PNARI++ Q
Sbjct: 139 NCAGGSTYSVLAVYDCMSWIKPKVGTVCFGVAASQATLLLAGGEKGMRYSMPNARIMMGQ 198

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           P  GF G   D++R   + V+ + +++ ++    G   E V++  DR
Sbjct: 199 PRCGFGGHVEDVKRLVNEAVQSRHKMDNMFSAFTGLPIETVQEYTDR 245


>gi|254704397|ref|ZP_05166225.1| ATP-dependent Clp protease proteolytic subunit [Brucella suis bv. 3
           str. 686]
          Length = 114

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 77/114 (67%), Positives = 98/114 (85%)

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIK 162
           +ST CMGQAASMGSLLL+AG  G R+ALPNARI++HQPSGGF GQASDIERHAQDI+K+K
Sbjct: 1   VSTLCMGQAASMGSLLLTAGATGHRYALPNARIMVHQPSGGFQGQASDIERHAQDIIKMK 60

Query: 163 RRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           RRLNEIYVK+ G+ Y+ +E+TLDRDH M+A EA ++G++DKV+ +R    ++SK
Sbjct: 61  RRLNEIYVKHTGRDYDTIERTLDRDHFMTAQEALEFGLIDKVVEARDVSADESK 114


>gi|255573147|ref|XP_002527503.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis]
 gi|223533143|gb|EEF34901.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis]
          Length = 308

 Score =  162 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 61/191 (31%), Positives = 90/191 (47%), Gaps = 10/191 (5%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS---------PGG 84
           D+ S LL  RI ++   I   +  L+ AQ ++L+ ++  K I LYINS           G
Sbjct: 90  DLPSLLLDARICYLGMPIVPAVTELLVAQFMYLDYDDSSKPIYLYINSSGTQNEKMETVG 149

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS-GG 143
             T   AI D M + K  + T   G A     +LLS G KG R   PNA   L+ P    
Sbjct: 150 SETEAYAIADAMFYCKSTVYTVNCGMAYGQAGMLLSLGAKGYRALQPNASTKLYLPKVNR 209

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            SG   D+   A+++        ++  K  GKT EE+ K + R    ++ EA ++G+ DK
Sbjct: 210 SSGAVIDMWIKAKELDANTEYYIDLLAKGTGKTKEEINKDIQRPKYFNSKEAIEYGLADK 269

Query: 204 VLMSRIDIEEK 214
           ++ S  D  EK
Sbjct: 270 IVDSSDDAFEK 280


>gi|148906385|gb|ABR16347.1| unknown [Picea sitchensis]
          Length = 393

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 63/191 (32%), Positives = 95/191 (49%), Gaps = 10/191 (5%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG--------- 84
           D+ S LL  RI+++   I   +  L+ A+L++L+ +NP K I  YINSPG          
Sbjct: 173 DLPSLLLDARILYLGMPIVPAVTELLIAELMWLDYDNPSKPIYFYINSPGTQNEKHEPIA 232

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS-GG 143
             T   AI D + ++KP + T   G A     +LLS G KG R  +P++   LH P    
Sbjct: 233 FETEAYAIADMIAYVKPKVYTLNCGMAFGQAGMLLSLGTKGHRALMPSSTTKLHLPVVNK 292

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            SG + D+   A+++        E+  K  GKT EE+ K + R       EA D+G+ DK
Sbjct: 293 SSGSSIDMWIKAKELEANTEYYIELLAKGIGKTKEEIAKDIQRSRYFFPQEAIDYGIADK 352

Query: 204 VLMSRIDIEEK 214
           +L  +  + EK
Sbjct: 353 ILPKQGLVMEK 363


>gi|323491854|ref|ZP_08097029.1| ATP-dependent Clp protease proteolytic subunit [Vibrio brasiliensis
           LMG 20546]
 gi|323313989|gb|EGA67078.1| ATP-dependent Clp protease proteolytic subunit [Vibrio brasiliensis
           LMG 20546]
          Length = 156

 Score =  161 bits (409), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 59/152 (38%), Positives = 97/152 (63%), Gaps = 1/152 (0%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMG 115
           A  +C  L +L++    ++I++ INSPGG V +G +I+D ++F+   +     G  AS G
Sbjct: 1   AEKVCRSLAYLDS-VSNEDITIMINSPGGHVESGDSIHDMIKFVTSKVIIIGTGYVASAG 59

Query: 116 SLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK 175
           + +  A EK  R+ALPN R ++HQPSGG  GQ SDI    ++I K+KRR+ ++     G+
Sbjct: 60  THIYLAAEKCNRYALPNTRFMIHQPSGGSQGQVSDILIQMEEISKMKRRIAKVISDATGQ 119

Query: 176 TYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
             ++V + +DRDH M+A EA D+G+V++++ S
Sbjct: 120 DMDKVLEDIDRDHWMTAQEAVDYGIVNEIIES 151


>gi|63055038|gb|AAY29057.1| predicted ATP-dependent Clp protease proteolytic subunit 1
           [Bifidobacterium animalis subsp. lactis DSM 10140]
          Length = 138

 Score =  161 bits (408), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 62/129 (48%), Positives = 89/129 (68%)

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG +TAGMAIYDTMQ I+P ++T  +G  ASMG  LLS+G KG RF   +AR+L+H
Sbjct: 1   INSPGGSITAGMAIYDTMQLIEPDVATVGIGMCASMGQFLLSSGTKGKRFLTSHARVLMH 60

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           QPSGG  G  +D+  +A+ I+ +K+ L E+  +  G T EE+ +  + DH  +A EA ++
Sbjct: 61  QPSGGIGGTTTDVRINAELIMDMKKTLGELTAEQTGHTIEEIYRDNEYDHWFTAEEALEY 120

Query: 199 GVVDKVLMS 207
           G VDK++ +
Sbjct: 121 GFVDKLVST 129


>gi|110776269|ref|XP_001123103.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 1-like,
           partial [Apis mellifera]
          Length = 222

 Score =  161 bits (408), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 87/118 (73%), Positives = 104/118 (88%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMVVEQT+RGER++DIYSRLLKERI+F+TG + D +A+LI AQLL+LE+ NP+KEIS
Sbjct: 105 TLVPMVVEQTSRGERAFDIYSRLLKERIIFLTGPVYDQVASLISAQLLYLESVNPKKEIS 164

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
            YINSPGGVV+AG+AIYDTMQ+I+ P+ST C+GQAASMGSLLL  GE   RFALPNAR
Sbjct: 165 FYINSPGGVVSAGLAIYDTMQYIRCPVSTVCIGQAASMGSLLLCGGEPNNRFALPNAR 222


>gi|169142735|ref|YP_001687162.1| clp protease proteolytic subunit [Oenothera argillicola]
 gi|159792973|gb|ABW98729.1| clp protease proteolytic subunit [Oenothera argillicola]
          Length = 251

 Score =  161 bits (407), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 62/191 (32%), Positives = 106/191 (55%), Gaps = 6/191 (3%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
             D+Y+ L + R +F+   I   +A  I   ++FL  ++  + +  +INSPGG+  AG+ 
Sbjct: 28  WVDLYNVLYRTRSIFLGDAIHFEVANHIAGLMIFLTIQDATQNLYFFINSPGGLAVAGLL 87

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYDTMQ++ PP+ T  +G  ASM S LL  GE   R   PNAR+++HQP   ++ +   +
Sbjct: 88  IYDTMQYVTPPVYTLGLGVLASMASFLLVGGETSKRLMGPNARVMIHQPESDYTHKDRSL 147

Query: 152 ERHAQ--DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV----L 205
           E H    ++  I+  +  +Y++      E +   L+R+  M+A+EA  +G+VD +    L
Sbjct: 148 EVHLDSGEVEHIRNMVIRVYLERTRLPREVLNDHLERNLFMTATEAKYYGIVDDIGVENL 207

Query: 206 MSRIDIEEKSK 216
            +R+  E  S+
Sbjct: 208 FARLREESASQ 218


>gi|169143056|ref|YP_001687476.1| clp protease proteolytic subunit [Oenothera parviflora]
 gi|159895582|gb|ABX10146.1| clp protease proteolytic subunit [Oenothera parviflora]
          Length = 234

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 62/191 (32%), Positives = 107/191 (56%), Gaps = 6/191 (3%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
             D+Y+ L + R +F+   I   +A  I   ++FL  ++  + +  +INSPGG+  AG+ 
Sbjct: 26  WVDLYNVLYRTRSIFLGDAIHFEVANHIAGLMIFLTIQDATQNLYFFINSPGGLAVAGLL 85

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           IYDTMQ++ PP+ T  +G  ASM S LL  GE   R   PNAR+++HQP   ++ +   +
Sbjct: 86  IYDTMQYVTPPVYTLGLGVLASMASFLLVGGETSKRLMGPNARVMIHQPESDYTHKDRSL 145

Query: 152 ERHAQ--DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV----L 205
           E H    ++  I+  +  +Y++      E +   L+R+  M+A+EA  +G+VD +    L
Sbjct: 146 EVHLDSGEVEHIRNMVIRVYLERTRLPREVLNDHLERNLFMTATEAKYYGIVDDIGVENL 205

Query: 206 MSRIDIEEKSK 216
           ++R+  E  S+
Sbjct: 206 LARLREESASQ 216


>gi|148910727|gb|ABR18430.1| unknown [Picea sitchensis]
          Length = 393

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 63/191 (32%), Positives = 95/191 (49%), Gaps = 10/191 (5%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG--------- 84
           D+ S LL  RI+++   I   +  L+ A+L++L+ +NP K I  YINSPG          
Sbjct: 173 DLPSLLLDARILYLGMPIVPAVTELLIAELMWLDYDNPSKPIYFYINSPGTQNEKHEPIA 232

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS-GG 143
             T   AI D + ++KP + T   G A     +LLS G KG R  +P++   LH P    
Sbjct: 233 FETEAYAIADMIAYVKPKVYTLNCGMAFGQAGMLLSLGTKGHRALMPSSTTKLHLPVVNK 292

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            SG + D+   A+++        E+  K  GKT EE+ K + R       EA D+G+ DK
Sbjct: 293 SSGSSIDMWIKAKELEANTEYYIELLAKGIGKTKEEIAKDIQRSRYFFPQEANDYGIADK 352

Query: 204 VLMSRIDIEEK 214
           +L  +  + EK
Sbjct: 353 ILPKQGLVMEK 363


>gi|293418508|ref|ZP_06660943.1| Clp protease [Escherichia coli B088]
 gi|291325036|gb|EFE64451.1| Clp protease [Escherichia coli B088]
          Length = 102

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 53/101 (52%), Positives = 79/101 (78%)

Query: 108 MGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNE 167
           MGQAASMG+ LL+AG KG RF LPN+R+++HQP GG+ GQA+DIE HA++I+K+K R+NE
Sbjct: 1   MGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNE 60

Query: 168 IYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           +   + G++ E++E+  +RD  +SA EA ++G+VD +L  R
Sbjct: 61  LMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHR 101


>gi|168026989|ref|XP_001766013.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162682656|gb|EDQ69072.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 348

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 60/191 (31%), Positives = 94/191 (49%), Gaps = 10/191 (5%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------G 84
           D+ S LL  RI ++   I   +  LI A+LL+L+ +NP K I  YINS G         G
Sbjct: 127 DLPSLLLDARICYLGMAIVPAVTELIIAELLWLDFDNPSKPIYFYINSSGTQNEKKESIG 186

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS-GG 143
             T   AI DT++++K  + T   GQA    ++LLS GEKG R   P++   L+ P    
Sbjct: 187 FETEAYAIADTIRYVKSKVYTINCGQAFGQAAMLLSIGEKGFRALQPSSSTKLYSPKVNQ 246

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            SG ++D+    +++        ++     GK+ EE+   + R       EA D+G+ DK
Sbjct: 247 SSGSSTDMWIKGKELDANTDYYIDLLASGTGKSKEEIANDIRRPRYFRPQEAIDYGLADK 306

Query: 204 VLMSRIDIEEK 214
           ++  R    E+
Sbjct: 307 IIEPRGIAMER 317


>gi|148908273|gb|ABR17251.1| unknown [Picea sitchensis]
          Length = 158

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 55/146 (37%), Positives = 87/146 (59%), Gaps = 8/146 (5%)

Query: 77  LYINSPG--------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           +YINS G        G  T   A+YDTM+++KPPI T C+G A    SLLL+AG KG R 
Sbjct: 1   MYINSTGTTKDGEKLGYETEAFAVYDTMRYVKPPIFTLCIGNAWGEASLLLAAGAKGNRA 60

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LP++ I++ QP     GQA+DI+   +++  +K  L  +Y ++ G   E++E+ + R  
Sbjct: 61  SLPSSTIMIKQPIAQVRGQATDIDLARKEVRNVKNELVALYARHTGHPKEKIEQDIRRPK 120

Query: 189 IMSASEACDWGVVDKVLMSRIDIEEK 214
             S  EA ++G++DKV+ S    E++
Sbjct: 121 YFSPQEAIEYGIIDKVIYSDKGTEDR 146


>gi|308807867|ref|XP_003081244.1| ATP-dependent Clp protease proteolytic subunit 3 (ISS)
           [Ostreococcus tauri]
 gi|116059706|emb|CAL55413.1| ATP-dependent Clp protease proteolytic subunit 3 (ISS)
           [Ostreococcus tauri]
          Length = 335

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 55/190 (28%), Positives = 98/190 (51%), Gaps = 10/190 (5%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS---------PGG 84
           D+ S LL  RI ++   +   +  L+ A+LL+L  E  +K   +YINS           G
Sbjct: 103 DLPSLLLNARICYIGMSLVPAVTELVVAELLYLGYEQAEKPCYVYINSGGSINEKGEVVG 162

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
           +     AI DTM++I+ PI T  +G+     SL+L+ G+KG R ALP+ +I    P    
Sbjct: 163 MDNEAYAILDTMRYIRSPIHTVAVGKCHGNASLILAGGDKGRRHALPHVQISTGPPKLNR 222

Query: 145 SGQAS-DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
           +  ++ +++  A +    +    ++  +  GK  E V K LDR    + ++A ++G++DK
Sbjct: 223 TFDSTQNVQIRANECAMYEDTYMDLMAEYTGKDGETVRKDLDRTRYFTPNQAIEYGIIDK 282

Query: 204 VLMSRIDIEE 213
           V+   +++ E
Sbjct: 283 VITKGLNVME 292


>gi|169142885|ref|YP_001687308.1| clp protease proteolytic subunit [Oenothera glazioviana]
 gi|159895497|gb|ABX10062.1| clp protease proteolytic subunit [Oenothera glazioviana]
          Length = 250

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 60/191 (31%), Positives = 109/191 (57%), Gaps = 6/191 (3%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
             D+Y+ L + R +F+   I   +A  I   ++FL  ++  + +  +INSPGG+  AG+ 
Sbjct: 27  WVDLYNVLYRTRSIFLGDAIHFEVANHIAGLMIFLTIQDATQNLYFFINSPGGMAVAGLL 86

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS-- 149
           IYDTMQ++ PP+ T  +G  ASM S LL  GE   R   PNAR+++HQP   ++ +    
Sbjct: 87  IYDTMQYVTPPVYTLGLGVLASMASFLLVGGETSKRLMGPNARVMIHQPESDYTHKDKTL 146

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV----L 205
           +++  + ++  I+  +  +Y++      E +   L+R++ M+A+EA  +G+VD +    L
Sbjct: 147 EVQLDSGEVEDIRNMVIRVYLERTRLPREVLNDHLERNYFMTATEAKYYGIVDDIGIQNL 206

Query: 206 MSRIDIEEKSK 216
           ++R+  E  S+
Sbjct: 207 LARLREESASQ 217


>gi|255025053|ref|ZP_05297039.1| ATP-dependent Clp protease proteolytic subunit [Listeria
           monocytogenes FSL J1-208]
          Length = 117

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 55/116 (47%), Positives = 81/116 (69%)

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQ 156
            F+K  + T  MG AASMGS LL+AG  G RFALPNA I++HQP GG  GQA++IE  A+
Sbjct: 1   NFVKADVQTIGMGMAASMGSFLLTAGASGKRFALPNAEIMIHQPLGGAQGQATEIEIAAR 60

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
            I+KIK R+N I  +  G+ YE + +  DRD+ M+A EA D+G++D +++++  ++
Sbjct: 61  HILKIKERMNTIMAEKTGQPYEVIARDTDRDNFMTAQEAKDYGLIDDIIINKSGLK 116


>gi|225450774|ref|XP_002279451.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296089701|emb|CBI39520.3| unnamed protein product [Vitis vinifera]
          Length = 322

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 56/174 (32%), Positives = 97/174 (55%), Gaps = 11/174 (6%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV---------VTAGMAIY 93
           RIV++   +   +  L+ A+L++L+  +P++ + +YIN  G            T G AIY
Sbjct: 120 RIVYIGMPLVPAVTELVIAELMYLQWMDPKEPVYVYINCTGTTRDDGERVGMETEGFAIY 179

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG--QASDI 151
           D M  +K  I T  +G A     LLL+AG KG RF +P+A+ ++ QP    SG   ASD+
Sbjct: 180 DAMMQLKNEIHTVAVGAAIGQACLLLAAGTKGKRFMMPHAKAMIQQPRVPSSGLMPASDV 239

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
              A++++  +  L ++  K+ G + E V   + R + M +++A ++GV+DK+L
Sbjct: 240 LIRAKEVITNRDTLVKLLAKHTGNSEETVSTVMRRPYYMDSTKAKEFGVIDKIL 293


>gi|255635968|gb|ACU18330.1| unknown [Glycine max]
          Length = 324

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 58/174 (33%), Positives = 95/174 (54%), Gaps = 11/174 (6%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV---------VTAGMAIY 93
           RIV++   +   +  L+ A+L+ L+  +P++ I +YINS G            T G AIY
Sbjct: 122 RIVYIGMPLVPAVTELVVAELMCLQYMDPKETIFIYINSTGTTRDDGETVGMETEGFAIY 181

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG--QASDI 151
           D M  +K  I T  +G A     LLLSAG  G RF +P+A+ ++ QP    SG   ASD+
Sbjct: 182 DAMMQLKNEIHTVAVGSAIGQACLLLSAGTPGKRFMMPHAKAMIQQPRIPSSGLMPASDV 241

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
              A++++  +  L ++  K+ G + E V   + R + M A+ A ++GV+D++L
Sbjct: 242 LIRAKEVIINRDNLVKLLAKHTGNSEETVANVMKRPYYMDATRAKEFGVIDRIL 295


>gi|68071845|ref|XP_677836.1| ATP-dependent Clp protease proteolytic subunit, [Plasmodium berghei
           strain ANKA]
 gi|56498101|emb|CAI04312.1| ATP-dependent Clp protease proteolytic subunit, putative
           [Plasmodium berghei]
          Length = 239

 Score =  158 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 63/185 (34%), Positives = 106/185 (57%), Gaps = 10/185 (5%)

Query: 33  YDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV------- 85
             I S LL +RI+F++  I  H++  I +QLL+LE E+ +K I LYINS G +       
Sbjct: 54  ISIPSLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDLENNKIVN 113

Query: 86  ---VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSG 142
              +T  ++I D + +I   + T+C+G+A  +  +L S+G+KG RF+L N+   L Q   
Sbjct: 114 LNGITDVISIIDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLKQSYI 173

Query: 143 GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               QA++IE   ++I+  K+++ +I  KN  K    + + LDRD   +A+EA D+ ++D
Sbjct: 174 IPFNQATNIEIQNKEIMNTKKKVIDIIAKNTEKDNNIISEILDRDRYFNANEASDFNLID 233

Query: 203 KVLMS 207
            +L  
Sbjct: 234 HILEK 238


>gi|124809228|ref|XP_001348522.1| ATP-dependent Clp protease proteolytic subunit, putative
           [Plasmodium falciparum 3D7]
 gi|23497417|gb|AAN36961.1|AE014821_48 ATP-dependent Clp protease proteolytic subunit, putative
           [Plasmodium falciparum 3D7]
          Length = 244

 Score =  158 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 63/186 (33%), Positives = 106/186 (56%), Gaps = 11/186 (5%)

Query: 33  YDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV------- 85
            +I S LL +RI+F++  I  H++  I +QLL+LE E+ +K I LYINS G +       
Sbjct: 58  INIPSLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIIN 117

Query: 86  ---VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSG 142
              +T  ++I D + +I   + T+C+G+A  +  +L S+G+KG RF+L N+   L+Q   
Sbjct: 118 LNGITDVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYS 177

Query: 143 GF-SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
                QA++IE   ++I+  K+++ EI  KN  K    +   L+RD   +A EA D+ ++
Sbjct: 178 IIPFNQATNIEIQNKEIMNTKKKVIEIISKNTEKDTNVISNVLERDKYFNADEAVDFKLI 237

Query: 202 DKVLMS 207
           D +L  
Sbjct: 238 DHILEK 243


>gi|167471039|ref|ZP_02335743.1| ATP-dependent Clp protease proteolytic subunit [Yersinia pestis
           FV-1]
          Length = 119

 Score =  158 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 87/120 (72%), Positives = 104/120 (86%), Gaps = 2/120 (1%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D     + LVPMVVEQT+RGERSYDI+SRLLKERI+F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--ERDQFAPNMALVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDHMANLIT 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP +ST CMGQA SMG+ LL+
Sbjct: 59  AQMLFLEAENPEKDIFLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLT 118


>gi|145350809|ref|XP_001419790.1| chloroplast Clp protease, subunit of ClpP peptidase complex
           [Ostreococcus lucimarinus CCE9901]
 gi|144580022|gb|ABO98083.1| chloroplast Clp protease, subunit of ClpP peptidase complex
           [Ostreococcus lucimarinus CCE9901]
          Length = 381

 Score =  158 bits (400), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 55/191 (28%), Positives = 97/191 (50%), Gaps = 10/191 (5%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS---------PGG 84
           D+ S LL  RI ++   +   +  L+ A+LL+L  E  +K   +YINS           G
Sbjct: 149 DLPSLLLNARICYIGMSLVPAVTELVVAELLYLGYEQAEKPCYVYINSGGSLNEKGEVVG 208

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
           +     AI DTM++I+P I T  +G+     SL+L+AG+KG R ALP+ +I    P    
Sbjct: 209 MDNEAYAILDTMRYIRPKIHTVAVGKCHGNASLILAAGDKGCRHALPHVQISTQPPKLNR 268

Query: 145 SGQAS-DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
           +  ++ +++  A +    +        +  GK  + V K LDR    + ++A ++G++DK
Sbjct: 269 TFDSTQNVQIRANECALYEDTYMGFMSEFSGKDIDVVRKDLDRTRYFTPNQAIEYGLIDK 328

Query: 204 VLMSRIDIEEK 214
           V+   +++ E 
Sbjct: 329 VITKGLNVMEA 339


>gi|308311726|gb|ADO27637.1| clpP [Rhizanthella gardneri]
          Length = 157

 Score =  158 bits (400), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 53/150 (35%), Positives = 96/150 (64%), Gaps = 1/150 (0%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
             D+Y+RL +ER++F+  +++  ++  +   +++L  E+  +++ L+INSPGG V  G++
Sbjct: 8   WIDVYNRLYRERLLFLGQEVDSEISNQLVGLMVYLSIEDNTRDLHLFINSPGGWVIPGIS 67

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASD 150
           IYDTMQF+ P + T C+G AAS+GSL+L  GE   R A P+AR+++HQP S  +  Q  +
Sbjct: 68  IYDTMQFVPPAVHTVCIGLAASIGSLILVGGEITKRIAFPHARVMIHQPASSFYESQVGE 127

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
               A++ +K++  + ++YV+   K    +
Sbjct: 128 FILEAEEFLKLRETILKVYVQRTSKPLLVI 157


>gi|210076021|ref|XP_505327.2| YALI0F12353p [Yarrowia lipolytica]
 gi|199424953|emb|CAG78134.2| YALI0F12353p [Yarrowia lipolytica]
          Length = 263

 Score =  158 bits (399), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 83/220 (37%), Positives = 118/220 (53%), Gaps = 42/220 (19%)

Query: 33  YDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI 92
           +DI ++LL ERIV V G I+D MAT + AQLL+LE ++ QK I +YINSPGG VTAG AI
Sbjct: 44  HDIPAKLLNERIVHVAGPIDDSMATSVVAQLLYLEHKSAQKPIHMYINSPGGAVTAGFAI 103

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIE 152
            DTM +I+ P+ T C+GQAASM SLLL+ G  G R   PN+ I+ H+P GG  G +  +E
Sbjct: 104 LDTMNYIRSPVHTVCLGQAASMASLLLTCGAPGNRIMTPNSTIMTHEPLGGIVGSSKLVE 163

Query: 153 RHAQDIVKIKRRLNEIYVKNC-----GKTYEEVEKTL---------------DR------ 186
            H   + +I+ R+ ++Y  +      G+  EE  +                 DR      
Sbjct: 164 LHTFHLQRIRTRIIQLYYDSMKLGLEGRLKEEGAEETHEAAEPTPLMSLLSSDRSWIDTI 223

Query: 187 ----------------DHIMSASEACDWGVVDKVLMSRID 210
                           D   +A EA   G+VD++L ++ +
Sbjct: 224 NQKTLTHSLVDTLIGLDQFFNADEALKLGLVDRILKTKGE 263


>gi|255070315|ref|XP_002507239.1| predicted protein [Micromonas sp. RCC299]
 gi|226522514|gb|ACO68497.1| predicted protein [Micromonas sp. RCC299]
          Length = 203

 Score =  157 bits (398), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 53/174 (30%), Positives = 96/174 (55%), Gaps = 11/174 (6%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG---------VVTAGMAIY 93
           RI+++   +   +  LI ++LL+++  +P +   +YINS G            T   +IY
Sbjct: 30  RIIYIGMPLVPAVTELIVSELLYMQYTDPARPCYIYINSTGCQRADGEVVGFETEATSIY 89

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQ--ASDI 151
           DTM++I   I T   G A     +LLSAG+KG RF   NA  +LHQP    +GQ  A ++
Sbjct: 90  DTMKYIGNEIFTVGTGVAIGQACMLLSAGDKGKRFMTKNATAMLHQPRVPSTGQRQAIEL 149

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
               +++++ K+ + +I  +  G + E+++K + R   M+A +A  +G++DK++
Sbjct: 150 HIKWKEVLEQKKTMVDILSQTTGHSKEQIDKDIQRPMYMTAEDAIAYGIIDKIV 203


>gi|331003376|ref|ZP_08326878.1| Clp protease [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330412573|gb|EGG91959.1| Clp protease [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 201

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 58/184 (31%), Positives = 109/184 (59%), Gaps = 5/184 (2%)

Query: 25  QTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG 84
           +TN G     + ++   +R + ++G+I D  A     ++L L  E+ +  I++ INSPGG
Sbjct: 8   KTNNGITQVPLETKFFGKRCISISGEINDESAIDFTDKILELNIESCE-PITILINSPGG 66

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS--G 142
            + +G+ +YD +   K PI   C G+A SMG++L +   K  R+ LPN+ ++LHQP   G
Sbjct: 67  EINSGLLMYDAIVGSKAPIRMICRGKAYSMGAVLFACASK--RYMLPNSELMLHQPMLGG 124

Query: 143 GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
             SG AS I+  +  +++ K++LN +  ++ GK+ EE+++  + DH  S +E+ ++ + D
Sbjct: 125 RVSGNASSIKSISDSMLETKKKLNSLLARHTGKSEEEIDEATNFDHYFSPTESIEFNLCD 184

Query: 203 KVLM 206
           +++ 
Sbjct: 185 EIIE 188


>gi|70942851|ref|XP_741542.1| ATP-dependent Clp protease proteolytic subunit, [Plasmodium
           chabaudi chabaudi]
 gi|56519988|emb|CAH74558.1| ATP-dependent Clp protease proteolytic subunit, putative
           [Plasmodium chabaudi chabaudi]
          Length = 202

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 63/186 (33%), Positives = 105/186 (56%), Gaps = 11/186 (5%)

Query: 33  YDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV------- 85
             I S LL +RI+F++  I  H++  I +QLL+LE E+ +K I LYINS G +       
Sbjct: 16  ISIPSLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDLENNKIVN 75

Query: 86  ---VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSG 142
              +T  ++I D + +I   + T+C+G+A  +  +L S+G+KG RF+L N+   L Q   
Sbjct: 76  LNGITDVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLKQSYS 135

Query: 143 GF-SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
                QA++IE   ++I+  K+++ +I  KN  K    + + LDRD   +A EA D+ ++
Sbjct: 136 IIPFNQATNIEIQNKEIMNTKKKVIDIIAKNTEKDSNIISEILDRDRYFNAKEASDFNLI 195

Query: 202 DKVLMS 207
           D +L  
Sbjct: 196 DHILEK 201


>gi|82594064|ref|XP_725269.1| Clp protease [Plasmodium yoelii yoelii str. 17XNL]
 gi|23480207|gb|EAA16834.1| Clp protease [Plasmodium yoelii yoelii]
          Length = 240

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 63/186 (33%), Positives = 107/186 (57%), Gaps = 11/186 (5%)

Query: 33  YDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV------- 85
            +I S LL +RI+F++  I  H++  I +QLL+LE E+ +K I LYINS G +       
Sbjct: 54  INIPSLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDLENNKIVN 113

Query: 86  ---VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSG 142
              +T  ++I D + +I   + T+C+G+A  +  +L S+G+KG RF+L N+   L Q   
Sbjct: 114 LNGITDVISIIDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLKQSYS 173

Query: 143 GF-SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
                QA++IE   ++I+  K+++ +I  KN  K    + + LDRD   +A+EA D+ ++
Sbjct: 174 IIPFNQATNIEIQNKEIMNTKKKVIDIIAKNTEKDNNIISEILDRDRYFNANEASDFNLI 233

Query: 202 DKVLMS 207
           D +L  
Sbjct: 234 DHILEK 239


>gi|224125178|ref|XP_002319519.1| predicted protein [Populus trichocarpa]
 gi|118486796|gb|ABK95233.1| unknown [Populus trichocarpa]
 gi|222857895|gb|EEE95442.1| predicted protein [Populus trichocarpa]
          Length = 341

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 59/174 (33%), Positives = 94/174 (54%), Gaps = 11/174 (6%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV---------VTAGMAIY 93
           RIV++   +   +  L+ A+L++L+  +P+  I +YINS G            T G AIY
Sbjct: 139 RIVYIGMPLVAAVTELVVAELMYLQWMDPKAPIYIYINSTGTTRDDGESVGMETEGFAIY 198

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG--QASDI 151
           D+M  +K  I T  +G A     LLL+AG KG R+ +P+A+ ++ QP    SG   ASD+
Sbjct: 199 DSMMQLKNEIHTVAVGAAIGQACLLLAAGTKGHRYMMPHAKAMIQQPRVPSSGLMPASDV 258

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
              A++ V  +  L E+  K+ G + E V   + R   M +  A ++GV+DK+L
Sbjct: 259 LIRAKEAVINRDVLTELLAKHTGNSVETVANVMKRPFYMDSRRAKEFGVIDKIL 312


>gi|161899373|ref|XP_001712913.1| Clp protease [Bigelowiella natans]
 gi|75756407|gb|ABA27301.1| Clp protease [Bigelowiella natans]
          Length = 207

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 64/162 (39%), Positives = 103/162 (63%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPI 103
           I+ + G ++D++A LI  + LF ++ +  KE++L INSPGG VTAG+ I D + ++K   
Sbjct: 45  ILSLYGGVDDNIADLIFKKALFTKSVDNNKELTLLINSPGGSVTAGLKIMDALNYVKVRN 104

Query: 104 STFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKR 163
           +T C+  AASMG+ LL++G +  R AL N+RI++HQP GG  G +  +E  A +I+  K 
Sbjct: 105 NTVCLALAASMGAFLLASGSRNYRQALLNSRIMIHQPLGGAFGDSLGVEIQANEILYFKL 164

Query: 164 RLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            L+      C K   E+    DRD+ MS+ +A ++G++DK+L
Sbjct: 165 VLSGYLSDFCRKPLNEILVDTDRDYFMSSKQATNYGLIDKIL 206


>gi|154316085|ref|XP_001557364.1| ATP-dependent Clp protease proteolytic subunit [Botryotinia
           fuckeliana B05.10]
 gi|150846414|gb|EDN21607.1| ATP-dependent Clp protease proteolytic subunit [Botryotinia
           fuckeliana B05.10]
          Length = 124

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 62/123 (50%), Positives = 90/123 (73%), Gaps = 2/123 (1%)

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           M +IK P+ST C+GQAASMGSLLL  GE G RF LP++ I++HQPSGG+SGQA+DI  HA
Sbjct: 1   MTYIKSPVSTVCVGQAASMGSLLLCGGEPGKRFCLPHSSIMIHQPSGGYSGQATDIAIHA 60

Query: 156 QDIVKIKRRLNEIYVKNCGK--TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
            +I+++++ LNEIY ++  K  + EE+E+ ++RD  +SA EA + G+VD++L  R    +
Sbjct: 61  TEILRVRKSLNEIYKRHLTKEHSLEEIERMMERDKFLSAQEALEMGIVDEILDRREPEGK 120

Query: 214 KSK 216
           K  
Sbjct: 121 KEN 123


>gi|195650193|gb|ACG44564.1| endopeptidase Clp [Zea mays]
          Length = 388

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 62/186 (33%), Positives = 88/186 (47%), Gaps = 10/186 (5%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG------- 84
           + D+ S LL  RI+F+   I   +  LI AQ L+L+ ++  K I LYINS G        
Sbjct: 162 APDLPSLLLDSRIIFLGMPIVPAVTELIAAQFLWLDYDDRTKPIYLYINSTGTMDENNEL 221

Query: 85  --VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSG 142
               T   AI D +   K  + T  +  A    ++LLS G KG R  LPN+   LH P  
Sbjct: 222 VASETDAYAIADFINRSKSKVYTINLSMAYGQAAMLLSLGVKGKRGVLPNSITKLHLPKV 281

Query: 143 GFSGQAS-DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
             SG A+ D+   A+++        E+  K  GK  EE+ + L       A EA D+G+ 
Sbjct: 282 HKSGGAAIDMWIKAKELDTNTDYYLELLSKGVGKPKEELAEFLRGPRYFRAQEALDYGLA 341

Query: 202 DKVLMS 207
           D +L S
Sbjct: 342 DTILHS 347


>gi|226529349|ref|NP_001141859.1| hypothetical protein LOC100274001 [Zea mays]
 gi|194689706|gb|ACF78937.1| unknown [Zea mays]
          Length = 388

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 62/186 (33%), Positives = 88/186 (47%), Gaps = 10/186 (5%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG------- 84
           + D+ S LL  RI+F+   I   +  LI AQ L+L+ ++  K I LYINS G        
Sbjct: 162 APDLPSLLLDSRIIFLGMPIVPAVTELIAAQFLWLDYDDRTKPIYLYINSTGTMDENNEL 221

Query: 85  --VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSG 142
               T   AI D +   K  + T  +  A    ++LLS G KG R  LPN+   LH P  
Sbjct: 222 VASETDAYAIADFINRSKSKVYTINLSMAYGQAAMLLSLGVKGKRGVLPNSITKLHLPKV 281

Query: 143 GFSGQAS-DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
             SG A+ D+   A+++        E+  K  GK  EE+ + L       A EA D+G+ 
Sbjct: 282 HKSGGAAIDMWIKAKELDTNTDYYLELLSKGVGKPKEELAEFLRGPRYFRAQEALDYGLA 341

Query: 202 DKVLMS 207
           D +L S
Sbjct: 342 DTILHS 347


>gi|303270891|ref|XP_003054807.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226462781|gb|EEH60059.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 210

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 62/192 (32%), Positives = 106/192 (55%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
                LG  P+ V     G    D ++ L + R++F+  +I++ +AT +CA+LL L+ + 
Sbjct: 3   PRAEKLGDPPVNVAVRTSGGEMIDCFTALERNRVIFIGDRIDEDVATSVCAKLLALQYDA 62

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
           P K+I++++N   G       I D M ++   IS   MG  A   ++LL+   KG R AL
Sbjct: 63  PDKDITIFLNCTAGTQYCVTTILDMMDYVSNDISVVAMGCVAGPPAMLLAGATKGKRLAL 122

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           P+ARI+L QP GG SG + +++  A+++ +  R     + K  GK++E++ + L RD  M
Sbjct: 123 PSARIILSQPLGGLSGTSYEVKIQAKELSRNARSQVAFFAKFTGKSFEDMGEYLVRDTYM 182

Query: 191 SASEACDWGVVD 202
           S  EA +  ++D
Sbjct: 183 SPKEAMEINLID 194


>gi|167042802|gb|ABZ07520.1| putative Clp protease [uncultured marine microorganism
           HF4000_ANIW137I15]
          Length = 122

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 56/118 (47%), Positives = 90/118 (76%), Gaps = 1/118 (0%)

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           ++P IST C+GQAASMG+LLL+AG +  RF+LPNARI++HQP  G  GQA+DIE HA++I
Sbjct: 1   MRPDISTICIGQAASMGALLLTAGAQAKRFSLPNARIMIHQPLAGVQGQATDIEIHAREI 60

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           ++++  L+ I V++ G+T + +    +RD  M+  EA ++G++D V++SR ++++KSK
Sbjct: 61  LRMRETLDGILVRHSGQTLKRIHTDTERDFFMTGIEAKEYGLIDDVIVSR-ELKQKSK 117


>gi|255088111|ref|XP_002505978.1| predicted protein [Micromonas sp. RCC299]
 gi|226521249|gb|ACO67236.1| predicted protein [Micromonas sp. RCC299]
          Length = 223

 Score =  155 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 57/184 (30%), Positives = 97/184 (52%), Gaps = 10/184 (5%)

Query: 41  KERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVV---------TAGMA 91
             RIV++   +   +  L+ A+LLFL  E   +   +YI+SPG +          +   A
Sbjct: 18  NARIVYIGMPLLPAVTELVVAELLFLNYEQVDRPGYVYIHSPGSINEKGECVGVDSEAYA 77

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS-D 150
           I DTM++I+P I T  +G+     ++LL+AG+KG R ALPNA+I+ H P    +   S +
Sbjct: 78  ILDTMRYIRPKIHTVAVGKCFGNAAMLLAAGDKGCRHALPNAQIMTHPPKLNRTFDTSVN 137

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           ++  A +I   +        +  GK  E V++ LDR    +  +A D+G++D+++    D
Sbjct: 138 VQIKANEIEVCEDTYMGFMSEFSGKPIETVKEELDRRRYFTPQQAIDYGLIDRIIQKGTD 197

Query: 211 IEEK 214
           + EK
Sbjct: 198 VFEK 201


>gi|76787240|ref|YP_329374.1| prophage LambdaSa04, ClpP endopeptidase [Streptococcus agalactiae
           A909]
 gi|76562297|gb|ABA44881.1| prophage LambdaSa04, ClpP endopeptidase (S14) family, non-peptidase
           homologue, putative [Streptococcus agalactiae A909]
          Length = 232

 Score =  155 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 86/187 (45%), Gaps = 4/187 (2%)

Query: 31  RSYDIYSRLLKERIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTA 88
           R +  ++   + R + + GQI  E      +  QL   +  +   +I+L+INSPGG V A
Sbjct: 2   RKFWNFTDEGEVRTLRIEGQIADETWFGDEVTPQLFKNDLTSETGDITLWINSPGGDVFA 61

Query: 89  GMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQA 148
              IY+ +   +  +     G AAS  S++  AG        P A +++H P     G+A
Sbjct: 62  AAQIYNMLMDYQGDVHVIIDGLAASAASVIAMAGTTV--SMSPVAMMMIHNPWTFAQGEA 119

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
            D+ +  + + +IK  +   Y    G +  ++   +D +   +A +A + G  DKVL  +
Sbjct: 120 KDMAKVIEMLGEIKESIINAYELRTGLSRTKISHLMDSESWFNAKKAVELGFADKVLFEK 179

Query: 209 IDIEEKS 215
            +  E+ 
Sbjct: 180 EETPEQD 186


>gi|242091575|ref|XP_002441620.1| hypothetical protein SORBIDRAFT_09g030550 [Sorghum bicolor]
 gi|241946905|gb|EES20050.1| hypothetical protein SORBIDRAFT_09g030550 [Sorghum bicolor]
          Length = 388

 Score =  155 bits (391), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 62/186 (33%), Positives = 88/186 (47%), Gaps = 10/186 (5%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG------- 84
           + D+ S LL  RI+F+   I   +  LI AQ L+L+ ++  K I LYINS G        
Sbjct: 162 APDLPSLLLDSRIIFLGMPIVPAVTELIAAQFLWLDYDDRTKPIYLYINSTGTMDENNEL 221

Query: 85  --VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSG 142
               T   AI D +   K  + T  +  A    ++LLS G KG R  LPN+   LH P  
Sbjct: 222 VASETDAYAIADFINRSKSKVYTINLSMAYGQAAMLLSLGVKGKRGVLPNSITKLHLPKV 281

Query: 143 GFSGQAS-DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
             SG A+ D+   A+++        E+  K  GK  EE+ + L       A EA D+G+ 
Sbjct: 282 HKSGGAAIDMWIKAKELDTNTDYYLELLSKGVGKPKEELAEFLKGPRYFRAQEAIDYGLA 341

Query: 202 DKVLMS 207
           D +L S
Sbjct: 342 DTILHS 347


>gi|226292665|gb|EEH48085.1| ATP-dependent Clp protease proteolytic subunit [Paracoccidioides
           brasiliensis Pb18]
          Length = 137

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 59/117 (50%), Positives = 88/117 (75%), Gaps = 2/117 (1%)

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           M +I  P+ST C+GQAASMGSLLL  G  G RF LP++ +++HQPSGG+ GQA+DI  HA
Sbjct: 1   MTYISAPVSTICVGQAASMGSLLLCGGHPGKRFCLPHSSVMVHQPSGGYFGQATDIAIHA 60

Query: 156 QDIVKIKRRLNEIYVKNCGK--TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           ++I++++R+LNEIY ++  K  + +E+EK ++RD+ M A EA + G+VD++L  RI 
Sbjct: 61  KEILRVRRQLNEIYKRHLKKEMSLDEIEKWMERDYFMGAKEALEMGIVDEILDRRIK 117


>gi|153217638|ref|ZP_01951319.1| Clp protease [Vibrio cholerae 1587]
 gi|124113417|gb|EAY32237.1| Clp protease [Vibrio cholerae 1587]
          Length = 97

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 47/97 (48%), Positives = 70/97 (72%)

Query: 114 MGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC 173
           MG+ LL+ G  G R+ LPN+R+++HQP GGF GQASDI+ HAQ+I+ IK +LN +  ++ 
Sbjct: 1   MGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKNKLNRLLAEHT 60

Query: 174 GKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           G+  E +E+  DRD+ MSA +A ++G+VD VL  R +
Sbjct: 61  GQPIEVIERDTDRDNFMSADQAVEYGLVDAVLKHRGE 97


>gi|115452971|ref|NP_001050086.1| Os03g0344900 [Oryza sativa Japonica Group]
 gi|113548557|dbj|BAF12000.1| Os03g0344900 [Oryza sativa Japonica Group]
          Length = 349

 Score =  154 bits (390), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 58/182 (31%), Positives = 99/182 (54%), Gaps = 19/182 (10%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS---------PGGVVTAGMAIY 93
           RIV++   +   +  L+ AQL++LE  N ++ + +YINS         P G+ + G AIY
Sbjct: 139 RIVYIGMPLVPAVTELVVAQLMYLEWMNSKEPVYIYINSTGTARDDGEPVGMESEGFAIY 198

Query: 94  DTMQFIKPP---ISTFCMGQAASMGSLLLSAGEKGMRFALPNAR-----ILLHQPSGGFS 145
           D M  +K     I T C+G AA    L+L+AG+KG R+  P+A+      ++ QP     
Sbjct: 199 DAMMRMKTEKIRIHTLCIGAAAGHACLVLAAGKKGKRYMFPHAKDSIMPAMIQQPRIPSY 258

Query: 146 G--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
           G  QASD+   A+++V  +  L  +  ++ G   E+++K +     M + +A ++GV+DK
Sbjct: 259 GMMQASDVVIRAKEVVHNRNTLVRLLARHTGNPPEKIDKVMRGPFYMDSLKAKEFGVIDK 318

Query: 204 VL 205
           +L
Sbjct: 319 IL 320


>gi|303275766|ref|XP_003057177.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461529|gb|EEH58822.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 372

 Score =  154 bits (389), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 55/185 (29%), Positives = 94/185 (50%), Gaps = 10/185 (5%)

Query: 41  KERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS---------PGGVVTAGMA 91
             RIV++   +   +  L+ A+LLFL  E  ++   +YI+S           G+ T   A
Sbjct: 161 NARIVYIGMPLLPAVTELVVAELLFLNYEQNERPGYMYIHSGGSINEKGEVVGIDTEAYA 220

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS-GGFSGQASD 150
           I DTM++IKP + T  +G+     ++LL+AG  G R ALPNA+I+ H P        A +
Sbjct: 221 ILDTMRYIKPKMHTVAVGKCFGNAAMLLAAGHPGCRHALPNAQIMTHPPKLNRTFDTAVN 280

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           ++  A +I   +        +  GK  EEV + LDR    +  +A ++G++D+++    D
Sbjct: 281 VQIRANEIDVCEDTYMGFMSEFSGKPQEEVTRDLDRRRYFTPKQAIEYGLIDRIIQKGSD 340

Query: 211 IEEKS 215
           + E+ 
Sbjct: 341 VFERK 345


>gi|218197363|gb|EEC79790.1| hypothetical protein OsI_21214 [Oryza sativa Indica Group]
          Length = 386

 Score =  154 bits (389), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 64/198 (32%), Positives = 91/198 (45%), Gaps = 15/198 (7%)

Query: 25  QTNRGERSY-----DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           +  RG R       D+ S LL  RI+F+   I   +  LI AQ L+L+ ++  K I LYI
Sbjct: 148 RAGRGYRRMRSSAPDLPSLLLDSRIIFLGMPIVPAVTELIAAQFLWLDYDDRTKPIYLYI 207

Query: 80  NSPGG---------VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
           NS G            T   AI D +   K  + T  +  A    ++LLS G KG R  L
Sbjct: 208 NSTGTMDENNGLVASETDAFAIADFINRSKSKVYTINLSMAYGQAAMLLSLGVKGKRGVL 267

Query: 131 PNARILLHQPSGGFSGQAS-DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           PN+   L+ P    SG A+ D+   A+++        E+  K  GK  EE+ + L     
Sbjct: 268 PNSITKLYLPKVHKSGGAAIDMWIKAKELDTNTDYYLELLSKGVGKPKEELAEFLKGPRY 327

Query: 190 MSASEACDWGVVDKVLMS 207
             A EA D+G+ D +L S
Sbjct: 328 FRAQEAIDYGLADTILHS 345


>gi|302665244|ref|XP_003024234.1| hypothetical protein TRV_01584 [Trichophyton verrucosum HKI 0517]
 gi|291188281|gb|EFE43623.1| hypothetical protein TRV_01584 [Trichophyton verrucosum HKI 0517]
          Length = 126

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 61/123 (49%), Positives = 93/123 (75%), Gaps = 3/123 (2%)

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           M +I+ P+ST C+GQAASMGSLLL  GE G R+ LP++ +++HQPSGG+ GQA+DI  HA
Sbjct: 1   MTYIQSPVSTICVGQAASMGSLLLCGGEAGKRYCLPHSSVMIHQPSGGYFGQATDIAIHA 60

Query: 156 QDIVKIKRRLNEIYVKN-CGK--TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
           ++I++++ +LN+IY ++  GK  T EE+EK ++RD+ M A EA + G+VD +L  R+  +
Sbjct: 61  KEILRVRHQLNQIYKRHLTGKEMTLEEIEKLMERDYFMGAKEALEMGIVDSILDRRMPSK 120

Query: 213 EKS 215
           E+S
Sbjct: 121 EES 123


>gi|261755075|ref|ZP_05998784.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brucella suis
           bv. 3 str. 686]
 gi|261744828|gb|EEY32754.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brucella suis
           bv. 3 str. 686]
          Length = 109

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 74/109 (67%), Positives = 94/109 (86%)

Query: 108 MGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNE 167
           MGQAASMGSLLL+AG  G R+ALPNARI++HQPSGGF GQASDIERHAQDI+K+KRRLNE
Sbjct: 1   MGQAASMGSLLLTAGATGHRYALPNARIMVHQPSGGFQGQASDIERHAQDIIKMKRRLNE 60

Query: 168 IYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           IYVK+ G+ Y+ +E+TLDRDH M+A EA ++G++DKV+ +R    ++SK
Sbjct: 61  IYVKHTGRDYDTIERTLDRDHFMTAQEALEFGLIDKVVEARDVSADESK 109


>gi|255542730|ref|XP_002512428.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis]
 gi|223548389|gb|EEF49880.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis]
          Length = 325

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 60/174 (34%), Positives = 94/174 (54%), Gaps = 11/174 (6%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV---------VTAGMAIY 93
           RIV++   +   +  L+ A+L++L+  +P++ I LYINS G            T G AIY
Sbjct: 123 RIVYIGMPLVPAVTELVVAELMYLQWMDPKEPIYLYINSTGTTRDDGETVGMETEGFAIY 182

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG--QASDI 151
           D+M  +K  I T  +G A     LLL+AG KG RF +P+A+ ++ QP    SG   ASD+
Sbjct: 183 DSMMQLKNEIHTVAVGAAIGQACLLLAAGTKGKRFMMPHAKAMIQQPKVPSSGLMAASDV 242

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
              A++ V  +  L E+  K+   + E V   + R   M +  A ++GV+DK+L
Sbjct: 243 LIRAKEAVTNRDTLVELLAKHTENSVETVANAMKRPFYMDSRRAKEFGVIDKIL 296


>gi|228991606|ref|ZP_04151550.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           pseudomycoides DSM 12442]
 gi|228768175|gb|EEM16794.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           pseudomycoides DSM 12442]
          Length = 111

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 54/111 (48%), Positives = 75/111 (67%)

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
            IKP + T CMG AAS G+LLL AG KG RFALPN+ I++HQP GG  GQA++IE  A+ 
Sbjct: 1   MIKPDVQTLCMGFAASFGALLLLAGAKGKRFALPNSEIMIHQPLGGVKGQATEIEITAKR 60

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           I+K+K  +N+I     G+  E+V    +RD+ M+A EA  +G+VD V+  +
Sbjct: 61  ILKLKHDINKIISDRTGQPIEKVALDTERDYFMTAEEAKIYGIVDAVIEKK 111


>gi|115465787|ref|NP_001056493.1| Os05g0592100 [Oryza sativa Japonica Group]
 gi|48475230|gb|AAT44299.1| unknown protein [Oryza sativa Japonica Group]
 gi|113580044|dbj|BAF18407.1| Os05g0592100 [Oryza sativa Japonica Group]
 gi|215701013|dbj|BAG92437.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222632764|gb|EEE64896.1| hypothetical protein OsJ_19755 [Oryza sativa Japonica Group]
          Length = 386

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 64/198 (32%), Positives = 91/198 (45%), Gaps = 15/198 (7%)

Query: 25  QTNRGERSY-----DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           +  RG R       D+ S LL  RI+F+   I   +  LI AQ L+L+ ++  K I LYI
Sbjct: 148 RAGRGYRRMRSSAPDLPSLLLDSRIIFLGMPIVPAVTELIAAQFLWLDYDDRTKPIYLYI 207

Query: 80  NSPGG---------VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
           NS G            T   AI D +   K  + T  +  A    ++LLS G KG R  L
Sbjct: 208 NSTGTMDENNELVASETDAFAIADFINRSKSKVYTINLSMAYGQAAMLLSLGVKGKRGVL 267

Query: 131 PNARILLHQPSGGFSGQAS-DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
           PN+   L+ P    SG A+ D+   A+++        E+  K  GK  EE+ + L     
Sbjct: 268 PNSITKLYLPKVHKSGGAAIDMWIKAKELDTNTDYYLELLSKGVGKPKEELAEFLKGPRY 327

Query: 190 MSASEACDWGVVDKVLMS 207
             A EA D+G+ D +L S
Sbjct: 328 FRAQEAIDYGLADTILHS 345


>gi|67525029|ref|XP_660576.1| hypothetical protein AN2972.2 [Aspergillus nidulans FGSC A4]
 gi|40744367|gb|EAA63543.1| hypothetical protein AN2972.2 [Aspergillus nidulans FGSC A4]
 gi|259486082|tpe|CBF83641.1| TPA: ATP-dependent Clp protease, proteolytic subunit ClpP
           (AFU_orthologue; AFUA_3G08330) [Aspergillus nidulans
           FGSC A4]
          Length = 135

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 57/120 (47%), Positives = 89/120 (74%), Gaps = 4/120 (3%)

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           M +I  P+ST C+GQAASMGSLLL  G+ G R+ LP++ I++HQPSGG+ GQA+DI  HA
Sbjct: 1   MTYIASPVSTICVGQAASMGSLLLCGGQAGQRYCLPHSSIMIHQPSGGYFGQATDIAIHA 60

Query: 156 QDIVKIKRRLNEIYVKN-CGK---TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           ++I++++ +LN+IY ++  GK   + +E+EK ++RD+ M A EA + G+VD++L  R+  
Sbjct: 61  KEILRVRHQLNQIYKRHLTGKKELSLDEIEKLMERDYFMGAREALELGIVDEILDRRVKT 120


>gi|194706198|gb|ACF87183.1| unknown [Zea mays]
          Length = 301

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 62/186 (33%), Positives = 88/186 (47%), Gaps = 10/186 (5%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG------- 84
           + D+ S LL  RI+F+   I   +  LI AQ L+L+ ++  K I LYINS G        
Sbjct: 75  APDLPSLLLDSRIIFLGMPIVPAVTELIAAQFLWLDYDDRTKPIYLYINSTGTMDENNEL 134

Query: 85  --VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSG 142
               T   AI D +   K  + T  +  A    ++LLS G KG R  LPN+   LH P  
Sbjct: 135 VASETDAYAIADFINRSKSKVYTINLSMAYGQAAMLLSLGVKGKRGVLPNSITKLHLPKV 194

Query: 143 GFSGQAS-DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
             SG A+ D+   A+++        E+  K  GK  EE+ + L       A EA D+G+ 
Sbjct: 195 HKSGGAAIDMWIKAKELDTNTDYYLELLSKGVGKPKEELAEFLRGPRYFRAQEALDYGLA 254

Query: 202 DKVLMS 207
           D +L S
Sbjct: 255 DTILHS 260


>gi|308807947|ref|XP_003081284.1| CLPP2_MYXXA ATP-dependent Clp protease proteolytic subunit 2 (ISS)
           [Ostreococcus tauri]
 gi|116059746|emb|CAL55453.1| CLPP2_MYXXA ATP-dependent Clp protease proteolytic subunit 2 (ISS)
           [Ostreococcus tauri]
          Length = 174

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 59/170 (34%), Positives = 102/170 (60%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D++  L  ERIVF+  +I++++A   CA+LL LEAE+P+ EI +++N   G      AI 
Sbjct: 3   DVFGALASERIVFLGQRIDENVALDACARLLALEAEDPEGEIRIWVNCVAGTQYCVTAIL 62

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           D M+++  PIST  +G  A    +L++AG+KG R+   +AR++L QP GG +G + +++ 
Sbjct: 63  DMMEYVSCPISTVALGCVAGPPVMLVAAGDKGKRYGTQSARMVLSQPLGGLAGTSIEVKI 122

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            A+++ +  +       +  GK  +E+E  + RD  M   EA D+G++D 
Sbjct: 123 QAKELNRNAKAQVGFIARYTGKDADELEAMMARDTYMGVQEAIDFGLLDH 172


>gi|225677382|ref|ZP_03788351.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia
           endosymbiont of Muscidifurax uniraptor]
 gi|225590572|gb|EEH11830.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia
           endosymbiont of Muscidifurax uniraptor]
          Length = 118

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 56/106 (52%), Positives = 84/106 (79%)

Query: 107 CMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLN 166
           C+GQAASMGSLLL+AG KG R++LP++RI++HQPSGG+ GQA+DIE HA +I+++K++LN
Sbjct: 2   CIGQAASMGSLLLAAGTKGKRYSLPHSRIMIHQPSGGYHGQATDIEIHANEILRVKKKLN 61

Query: 167 EIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
           +IY K+ G + +++E  ++RD  M   EA   G++D+V+  R DIE
Sbjct: 62  QIYEKHTGNSLKKIEGMMERDKFMDPEEARKIGLIDRVIAERTDIE 107


>gi|326505514|dbj|BAJ95428.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 386

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 62/186 (33%), Positives = 88/186 (47%), Gaps = 10/186 (5%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG------- 84
           + D+ S LL  RI+F+   I   +  LI AQ L+L+ ++  K I LYINS G        
Sbjct: 161 APDLPSLLLDSRIIFLGMPIVPAVTELIAAQFLWLDYDDRTKPIYLYINSTGTMDENNEL 220

Query: 85  --VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSG 142
               T   AI D +   K  + T  +  A    ++LLS G KG R  LPN+   LH P  
Sbjct: 221 VASETDAYAIADFINRSKAKVYTINLSMAYGQAAMLLSLGMKGKRGVLPNSITKLHLPKV 280

Query: 143 GFSGQAS-DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
             SG A+ D+   A+++        E+  K  GK  EE+ + L       A EA D+G+ 
Sbjct: 281 HKSGGAAIDMWIKAKELETNTDYYLELVSKGVGKPKEELAEFLRGPRYFRAQEAIDYGLA 340

Query: 202 DKVLMS 207
           D +L S
Sbjct: 341 DTILHS 346


>gi|302502710|ref|XP_003013316.1| hypothetical protein ARB_00501 [Arthroderma benhamiae CBS 112371]
 gi|291176879|gb|EFE32676.1| hypothetical protein ARB_00501 [Arthroderma benhamiae CBS 112371]
          Length = 126

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 60/123 (48%), Positives = 93/123 (75%), Gaps = 3/123 (2%)

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           M +I+ P+ST C+GQAASMGSLLL  GE G R+ LP++ +++HQPSGG+ GQA+DI  HA
Sbjct: 1   MTYIQSPVSTICVGQAASMGSLLLCGGEAGKRYCLPHSSVMIHQPSGGYFGQATDIAIHA 60

Query: 156 QDIVKIKRRLNEIYVKN-CGK--TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
           ++I++++ +LN+IY ++  GK  T EE+EK ++RD+ M A EA + G+VD +L  R+  +
Sbjct: 61  KEILRVRHQLNQIYKRHLTGKEMTLEEIEKLMERDYFMGAKEALEMGIVDSILDRRMPSK 120

Query: 213 EKS 215
           E++
Sbjct: 121 EET 123


>gi|194476565|ref|YP_002048744.1| ATP-dependent Clp protease proteolytic subunit [Paulinella
           chromatophora]
 gi|171191572|gb|ACB42534.1| ATP-dependent Clp protease proteolytic subunit [Paulinella
           chromatophora]
          Length = 219

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 64/197 (32%), Positives = 106/197 (53%), Gaps = 22/197 (11%)

Query: 30  ERSYDIYSRLLKERIVFVTGQI------------EDHMATLICAQLLFLEAENPQKEISL 77
           E   D+ S LL ERI+++   +              ++  L+ AQLL LE E     I++
Sbjct: 21  ESMSDLASILLSERIIYLGMALASDDETRQSFSLGMNVTQLMIAQLLCLEFE-SNSAITI 79

Query: 78  YINSPG---------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           YINS G         G  T   AIYDT++FI+ P+ TFC+G A    ++LL+ G  G R 
Sbjct: 80  YINSTGSTDINSNAIGHETEAFAIYDTIRFIESPVHTFCVGVAMGTATMLLACGASGCRA 139

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPNA I+L+QP     G ++DI    + ++  +  ++EI   + GK+ +++    +R H
Sbjct: 140 SLPNASIILNQPYNYVGGSSTDINIQVEQLLLSRSIMHEILSIHIGKSLQQIRSDCNRIH 199

Query: 189 IMSASEACDWGVVDKVL 205
            ++A +A  +G++D V+
Sbjct: 200 HLTAYQALHYGIIDDVI 216


>gi|307108088|gb|EFN56329.1| hypothetical protein CHLNCDRAFT_144777 [Chlorella variabilis]
          Length = 315

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 62/202 (30%), Positives = 101/202 (50%), Gaps = 28/202 (13%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG---------GVVTAGMAIY 93
           RIV++   +   +  LI A++L+L+ ++  K + LYINS G         G  T G AIY
Sbjct: 100 RIVYLGMPLVPAVTELIIAEMLYLQYKDRTKPMYLYINSTGTTRADGETVGFETEGTAIY 159

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG--QASDI 151
           DTM F+K  + T  +G A     +LLSAGEKG RF L +A  +LHQP    +G  QA +I
Sbjct: 160 DTMCFVKNEVHTVGVGVAIGQSCMLLSAGEKGKRFMLEHATAMLHQPRVPPTGQRQAIEI 219

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK-----------------TLDRDHIMSASE 194
           +   ++++  K+ +  I  +  G + ++++K                  + R   M  ++
Sbjct: 220 QIKWREVLAQKQNMLAILSRTTGHSPDKLDKASAAGGGWWPGLALGAGDMQRPLYMQPAD 279

Query: 195 ACDWGVVDKVLMSRIDIEEKSK 216
           A  +GV+D V+     I +  K
Sbjct: 280 ALAYGVIDGVVTPEKKIIDDVK 301


>gi|166201966|gb|ABY84438.1| ATP-dependent protease proteolytic subunit [Oenothera fruticosa]
          Length = 295

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 65/190 (34%), Positives = 112/190 (58%), Gaps = 5/190 (2%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
             D+++ L ++RI+F+  +I+  +   I   +++L  +NP  ++  +INSPGG+   G  
Sbjct: 20  WLDLFNILYRKRILFLGQEIDVELGNHIVGLMVYLGIDNPFLDMIFFINSPGGLAIPGFG 79

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQA-SD 150
           IYD MQ+IKP + T  +G  ASM SL+LS G KG R    N RI++HQP+  +       
Sbjct: 80  IYDIMQYIKPNVYTIGLGVVASMASLILSGGGKGKRIGGKNMRIMIHQPAMSYRKDPLRT 139

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV----LM 206
           I R A+ +  ++ ++ + Y+K  GK    + K L+R+  M+++EA  +G+VD +    L+
Sbjct: 140 ILREAEGMSCLRTQVLKCYIKKTGKDCGVINKLLERNTFMTSTEALGFGIVDSIADGRLL 199

Query: 207 SRIDIEEKSK 216
           +RI+ E + K
Sbjct: 200 TRIEKERRMK 209


>gi|115349976|ref|YP_764387.1| proteolytic subunit 2 of clp protease [Stigeoclonium helveticum]
 gi|98990190|gb|ABF60157.1| proteolytic subunit 2 of clp protease [Stigeoclonium helveticum]
          Length = 518

 Score =  151 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 55/141 (39%), Positives = 87/141 (61%)

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E    Q  + ++INS GG V++G+ IYD +QF+K    T C+G A S  S++L+ G  G 
Sbjct: 331 ERLQEQSRVFVFINSTGGSVSSGITIYDALQFVKTGAVTVCLGMAFSASSMVLAGGNIGH 390

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           R+    A +++HQP GG +GQASD+   A +I++I+R++  IY     +   EV K LDR
Sbjct: 391 RYVAEGAHVMIHQPEGGITGQASDVLLDAYEILRIRRQVATIYSLCSKRALSEVLKDLDR 450

Query: 187 DHIMSASEACDWGVVDKVLMS 207
           D+ M+  EA D+G+ D+++  
Sbjct: 451 DNFMTPQEAVDYGLADEIVTR 471


>gi|77411264|ref|ZP_00787614.1| ClpP protease family protein [Streptococcus agalactiae CJB111]
 gi|77162690|gb|EAO73651.1| ClpP protease family protein [Streptococcus agalactiae CJB111]
          Length = 232

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 45/175 (25%), Positives = 80/175 (45%), Gaps = 4/175 (2%)

Query: 43  RIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           R + + GQI  E      +  Q    +  +   +I+L+INSPGG V A   IY+ +   +
Sbjct: 14  RTLRIEGQIADETWFGDEVTPQQFKNDLISGTGDITLWINSPGGDVFAAAQIYNMLMDYQ 73

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
             +     G AAS  S++  AG        P A +++H P     G+A D+ +  + + +
Sbjct: 74  GDVHVIIDGLAASAASVIAMAGTTV--SMSPVAMMMIHNPWTFAQGEAKDMAKVIEMLGE 131

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
           IK  +   Y    G +  ++   +D +   +A +A + G  DKVL  + +  E+ 
Sbjct: 132 IKESIINAYELRTGLSRTKISHLMDSESWFNAKKAVELGFADKVLFEKEETPEQD 186


>gi|21449427|gb|AAM54134.1|AF514859_1 ATP-dependent Clp protease [Oryza sativa Indica Group]
          Length = 191

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 53/126 (42%), Positives = 79/126 (62%), Gaps = 9/126 (7%)

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG--- 146
           M +YD M+F K  IST C G AASMG+ LL+AG KG RF +PNARI++HQPSGG  G   
Sbjct: 1   MGVYDAMKFCKADISTVCFGLAASMGAFLLAAGTKGKRFCMPNARIMIHQPSGGAGGKNM 60

Query: 147 ------QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
                 Q +++    ++++  K ++N+I  +  GK  E++++    D+ MS  EA D+G+
Sbjct: 61  LICAIWQVTEMGLQIREMMYEKIKINKILSRITGKPEEQIDEDTKFDYFMSPWEAKDYGI 120

Query: 201 VDKVLM 206
           VD V+ 
Sbjct: 121 VDSVID 126


>gi|217074128|gb|ACJ85424.1| unknown [Medicago truncatula]
          Length = 322

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 59/174 (33%), Positives = 95/174 (54%), Gaps = 11/174 (6%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV---------VTAGMAIY 93
           RIV++   +   +  L+ A+L+FL+   P++ I +YINS G            + G AIY
Sbjct: 119 RIVYIGMPLVPAVTELVIAELMFLQWMAPKEPIYIYINSTGTTRADGETVAMESEGFAIY 178

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG--QASDI 151
           D M  +K  I+T  +G A     LLLSAG KG R+  P+A+ ++ QP    SG   ASD+
Sbjct: 179 DAMMQMKTEINTVALGAAVGQACLLLSAGTKGRRYMTPHAKAMIQQPRVPSSGLRPASDV 238

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
             HA++++  +  L ++  K+   + E V   + R + M A  A ++GV+DK+L
Sbjct: 239 LIHAKEVMVNRDTLVKLLAKHTENSEETVSNVMKRSYYMDALLAKEFGVIDKIL 292


>gi|159470091|ref|XP_001693193.1| inactive subunit of chloroplast ClpP complex [Chlamydomonas
           reinhardtii]
 gi|158277451|gb|EDP03219.1| inactive subunit of chloroplast ClpP complex [Chlamydomonas
           reinhardtii]
          Length = 276

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 61/188 (32%), Positives = 93/188 (49%), Gaps = 12/188 (6%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG--------GV 85
           D+ +RL  ERI+++   I+  +A L+ AQL  L  E P   I  YINS G        G 
Sbjct: 44  DLATRLFSERIMYLGMPIDSSVAELLTAQLFVLVQEAPD-PIFFYINSTGIAKSTTKFGN 102

Query: 86  VTAGMAIYDTMQFIK--PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
               +A+Y  M+ ++   PI T C+G A    +LLLSAG  G R AL ++ I+L QP   
Sbjct: 103 EHEAIAVYSMMKGVQKYCPIYTLCVGNAFGEAALLLSAGSPGKRAALRSSTIMLRQPLQR 162

Query: 144 FSG-QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
             G QASDI+ + +   +    + +       KT E++     R    +  EA  +G++D
Sbjct: 163 LGGMQASDIDIYRKITREKTATMAKYLAACTKKTEEQIMTDFTRPRYFNPYEAVSYGLID 222

Query: 203 KVLMSRID 210
            VL  + +
Sbjct: 223 TVLEPKEE 230


>gi|166201981|gb|ABY84447.1| ATP-dependent protease proteolytic subunit [Oenothera flava subsp.
           taraxacoides]
          Length = 236

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 60/186 (32%), Positives = 103/186 (55%), Gaps = 8/186 (4%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           +P +  +    E     D+Y+ L + R VF+  +++  ++  I   ++FL  E+  K++ 
Sbjct: 5   IPKIPFRIPGEEDASWIDLYNGLYRNRSVFLGQEVDYEISNHIAGLMIFLSIEDANKDLF 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
            +INSPGG+   G+ IYDTMQF+KP + T  +G  A MGS LL  GE   R A PN R++
Sbjct: 65  FFINSPGGLAIPGLGIYDTMQFVKPHVYTLGLGLXAXMGSFLLVGGEITKRLASPNVRVM 124

Query: 137 LHQPSGGFSGQASD----IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           +HQP+  ++  A D    +   ++++  I+  +  +YV+  G     +   L+R+  MSA
Sbjct: 125 IHQPASSYT--AKDPAAEVFEESEEVEAIREMVLRVYVQRTGNPPGVINDHLERNIFMSA 182

Query: 193 SEACDW 198
           +EA  +
Sbjct: 183 TEAKYY 188


>gi|302837484|ref|XP_002950301.1| hypothetical protein VOLCADRAFT_120863 [Volvox carteri f.
           nagariensis]
 gi|300264306|gb|EFJ48502.1| hypothetical protein VOLCADRAFT_120863 [Volvox carteri f.
           nagariensis]
          Length = 298

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 62/188 (32%), Positives = 96/188 (51%), Gaps = 12/188 (6%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG--------GV 85
           D+ +RL  ERI+++   I+  +A L+ AQL  L  E P   I  YINS G        G 
Sbjct: 66  DLATRLFTERIMYLGMPIDSSVAELLTAQLFVLVQEAPD-PIFFYINSTGIAKSTTKFGN 124

Query: 86  VTAGMAIYDTMQFIK--PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
               +A+Y  M+ ++   PI T C+G A    +LLLSAG  G R AL ++ I+L QP   
Sbjct: 125 EHEAVAVYHMMKGVQKFCPIYTLCVGNAFGEAALLLSAGTPGKRAALRSSTIMLRQPLQR 184

Query: 144 FSG-QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
            SG QASDI+ + +   +  + + +       KT E++ +   R    +  EA  +G++D
Sbjct: 185 LSGMQASDIDIYRKITREKTQTMAKYLAVCTKKTEEQIMEDFIRPRYFNPYEAVTYGLID 244

Query: 203 KVLMSRID 210
            VL  + +
Sbjct: 245 TVLEPKEE 252


>gi|194033275|ref|YP_002000447.1| ATP-dependent Clp protease proteolytic subunit [Oedogonium
           cardiacum]
 gi|156618980|gb|ABU88167.1| clp protease proteolytic subunit 2 [Oedogonium cardiacum]
 gi|186968892|gb|ACC97215.1| proteolytic subunit 2 of clp protease [Oedogonium cardiacum]
          Length = 560

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 51/141 (36%), Positives = 85/141 (60%)

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E    QK + ++INS GG V +G+ +YD +QF+K    T C+G A S  SL+L+ G  G 
Sbjct: 373 ERMQEQKRVFVFINSTGGSVHSGITVYDALQFVKAGTVTVCLGTAFSASSLVLAGGNIGH 432

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           R+      +++HQP GG  GQASD+     ++++++R+   IY     +++ E+ K LDR
Sbjct: 433 RYVSEGGHVMIHQPEGGIQGQASDVVVDTHELMRVRRQAATIYALCSKRSFHEILKDLDR 492

Query: 187 DHIMSASEACDWGVVDKVLMS 207
           D+ M+  EA D+G+ D+++  
Sbjct: 493 DYFMTPQEAIDYGLADEIVTR 513


>gi|304322945|ref|YP_003795510.1| proteolytic subunit 2 of clp protease [Floydiella terrestris]
 gi|270048144|gb|ACZ58439.1| proteolytic subunit 2 of clp protease [Floydiella terrestris]
          Length = 502

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 53/141 (37%), Positives = 89/141 (63%)

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E  + Q+ + ++INS GG +T+G+ IYD +QF+K    T C+G A S  S++L+ G  G 
Sbjct: 317 ERMSDQRRVFVFINSTGGSITSGITIYDALQFVKAGAVTVCLGMAFSASSMVLAGGNIGH 376

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           R+    + +++HQP GG  GQASD+   A +I++++R+   IY  +  + + EV K LDR
Sbjct: 377 RYVSEGSHVMMHQPEGGIKGQASDVLLDAHEILRVRRQAATIYTLSSKRAFHEVLKDLDR 436

Query: 187 DHIMSASEACDWGVVDKVLMS 207
           D+ M+  EA D+G+ D+++  
Sbjct: 437 DYFMTPQEAIDYGLADEIVTR 457


>gi|57234158|ref|YP_181801.1| ATP-dependent Clp protease, proteolytic subunit ClpP, putative
           [Dehalococcoides ethenogenes 195]
 gi|57224606|gb|AAW39663.1| ATP-dependent Clp protease, proteolytic subunit ClpP, putative
           [Dehalococcoides ethenogenes 195]
          Length = 242

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 42/173 (24%), Positives = 79/173 (45%), Gaps = 4/173 (2%)

Query: 42  ERIVFVTGQIEDHMA--TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           +R +++ G+I D       +  QL   E  +    I+L+INSPGG V A   IY+ +   
Sbjct: 20  DRTLYLDGEISDETWFGDEVTPQLFKDELSSGDGNITLWINSPGGDVFAAAQIYNMLMDY 79

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
              ++      AAS  S++  AG K      P A +++H P+    G   ++++    + 
Sbjct: 80  PHDVTVKIDALAASAASVIAMAGTKVC--MSPVAMMMIHNPATIAIGDTEEMQKAIDMLN 137

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
           ++K  +   Y    G +  ++ + +D +  M+A EA   G  D++L    +  
Sbjct: 138 EVKESIMNAYEIKSGLSRHKISQLMDAETWMNAKEAVKLGFADEILFKAGEEP 190


>gi|218281682|ref|ZP_03488076.1| hypothetical protein EUBIFOR_00643 [Eubacterium biforme DSM 3989]
 gi|218217248|gb|EEC90786.1| hypothetical protein EUBIFOR_00643 [Eubacterium biforme DSM 3989]
          Length = 181

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 61/164 (37%), Positives = 102/164 (62%), Gaps = 1/164 (0%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           RI+ + G++   M+  +  +L  L A+N    I++ I+SPGG +  GM I D M+ I+ P
Sbjct: 19  RIINLWGEVTPEMSLYVVTRLQELNAKNHD-PITIQIHSPGGSLRDGMIIIDMMEAIQSP 77

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIK 162
           + T  +G A SM SL+L+AGEKG R AL ++ I++HQ S    G+ SDI+  A+ +V+ +
Sbjct: 78  VYTMALGNAMSMASLILAAGEKGHRKALKHSTIMVHQGSTICEGKFSDIKSGAKRMVETE 137

Query: 163 RRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             + E+YVK  GKT  ++   L  D  +S+ +A ++G++D+V+ 
Sbjct: 138 EMIEELYVKYTGKTKRKIHADLQMDLFLSSDKAVEYGLIDEVVE 181


>gi|290962145|ref|YP_003493327.1| ATP-dependent Clp protease [Streptomyces scabiei 87.22]
 gi|260651671|emb|CBG74796.1| putative ATP-dependent Clp protease [Streptomyces scabiei 87.22]
          Length = 165

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 45/124 (36%), Positives = 73/124 (58%), Gaps = 2/124 (1%)

Query: 87  TAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSG--GF 144
           TA  A+YDT +F+   + T C GQA S  ++L +AG  G R  LP AR L+HQP+     
Sbjct: 27  TAMTALYDTNRFVTCDVETVCPGQAGSAAAVLPAAGTPGKRSMLPGARALIHQPAMADPV 86

Query: 145 SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            GQA D    A+++ + +R + E+ V++ G++ E +   ++RD  + A  A  +G+ D+V
Sbjct: 87  EGQAGDPAIRAEELTRHRRTMEEMLVRHTGRSPERIGADIERDTFLDAEAAVAYGLADRV 146

Query: 205 LMSR 208
           + SR
Sbjct: 147 VQSR 150


>gi|317501080|ref|ZP_07959286.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|316897467|gb|EFV19532.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
           bacterium 8_1_57FAA]
          Length = 242

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 41/171 (23%), Positives = 78/171 (45%), Gaps = 4/171 (2%)

Query: 42  ERIVFVTGQIEDHMA--TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           +R +++ G+I D       +  +L   E       I+L+INSPGG V A   IY+ +   
Sbjct: 20  DRTLYLDGEISDETWFGDEVTPKLFSDELHAGDGNITLWINSPGGDVFAAAQIYNMLMDY 79

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
              ++      AAS  S++  AG K      P A +++H P+    G   ++++    + 
Sbjct: 80  PHDVTVKIDALAASAASVIAMAGTKVC--MSPVAMMMVHNPATIAIGDTEEMQKAIDMLN 137

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           ++K  +   Y    G +  ++ + +D +  M+A EA   G  D++L    +
Sbjct: 138 EVKESIMNAYEIKSGLSRHKISQLMDAETWMNAKEAVKLGFADEILFRDGE 188


>gi|166201972|gb|ABY84442.1| ATP-dependent protease proteolytic subunit [Silene conoidea]
          Length = 231

 Score =  148 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 63/210 (30%), Positives = 100/210 (47%), Gaps = 29/210 (13%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
             +I + L ++RI+ +  +I+  +   I   LL L  E+  K+ +L+INS GG     + 
Sbjct: 23  WTEIQNFLYEKRILLIFEEIKPKVTCEITGLLLCLSNEDEYKDFTLFINSAGGKTRDALP 82

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS------ 145
           IYDTMQ + P + T  +G AASMG+L+L  GE G R A PN RI +H P+  F       
Sbjct: 83  IYDTMQVVAPAVRTVGIGVAASMGALILLGGEMGKRTASPNCRIKIHSPARAFYTTDSDS 142

Query: 146 ----------------------GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
                                     D      ++++++  L +IY K   K    +EK 
Sbjct: 143 DSDSDTDKKKKEKDPKKKKEQNRSVEDFSDAVGEMLRLREELVKIYAKRTQKPISVIEKD 202

Query: 184 LDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
           L  D  MS+ EA ++G++D  L  + D ++
Sbjct: 203 LAXDLFMSSEEAKEYGIIDT-LHXKFDFKK 231


>gi|211970349|emb|CAR97864.1| C. elegans protein ZK970.2b, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 117

 Score =  148 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 66/107 (61%), Positives = 85/107 (79%)

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
            I  P+ST+ +GQA+SMGSLLL AGEKGMR ALPN+RI++HQPSGG  G  SDI   A++
Sbjct: 1   MISAPVSTWVIGQASSMGSLLLCAGEKGMRSALPNSRIMVHQPSGGAQGTCSDIVIRAEE 60

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           I ++KRRLNEIYV + G +Y+E+EKTLDRD  MSA EA  +G+VD++
Sbjct: 61  ITRLKRRLNEIYVHHTGMSYDEIEKTLDRDRFMSAHEALKFGLVDQI 107


>gi|197303514|ref|ZP_03168553.1| hypothetical protein RUMLAC_02236 [Ruminococcus lactaris ATCC
           29176]
 gi|197297512|gb|EDY32073.1| hypothetical protein RUMLAC_02236 [Ruminococcus lactaris ATCC
           29176]
          Length = 334

 Score =  148 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 82/172 (47%), Gaps = 4/172 (2%)

Query: 41  KERIVFVTG--QIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           +ERI+F+ G    +      +   L   E      +I+L+INSPGG   A   I++ +  
Sbjct: 22  EERILFMNGVIAEDSWFDDDVTPALFKDELNAGTGDITLWINSPGGDCVAAAQIFNMLSE 81

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
               ++    G AAS  S++  AG +   +  P + +++H P+    G   ++++  + +
Sbjct: 82  YPGKVTVKIDGLAASAASVIAMAGTEV--WMSPVSMMMIHNPATVAWGDHVEMKKAMELL 139

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
             +K  +   YV+  G++  ++   +D +  M A++A + G  D +L  + +
Sbjct: 140 DAVKESIINAYVRKTGQSRAKLSHLMDAETWMDANKAVELGFADDILFQKEE 191


>gi|331090230|ref|ZP_08339118.1| hypothetical protein HMPREF1025_02701 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330402176|gb|EGG81748.1| hypothetical protein HMPREF1025_02701 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 238

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 44/178 (24%), Positives = 87/178 (48%), Gaps = 4/178 (2%)

Query: 30  ERSYDIYSRLLKERIVFVTGQIEDHMA--TLICAQLLFLEAENPQKEISLYINSPGGVVT 87
           +R +  + R   ER +F+ G+I D       +  +L   E  + + +I+++INSPGG V 
Sbjct: 2   KRKFWNWVRNEGERTLFLNGEISDETWYGDEVTPKLFKDELLSGEGDITVWINSPGGDVF 61

Query: 88  AGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQ 147
           A   IY+ +   K  ++    G AAS  S++  AG K      P A +++H P+    G 
Sbjct: 62  AAAQIYNMLMDYKGNVTVKIDGLAASAASVIAMAGTKV--LMSPVAMMMIHNPATIAIGD 119

Query: 148 ASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            +++++  + + ++K  +   Y    G    ++   +D +   +A +A + G  D++L
Sbjct: 120 TAEMKKAIEMLDEVKESIMNAYEIKTGLNRTKISHLMDAESWFNAKKAVELGFADEIL 177


>gi|139437300|ref|ZP_01771460.1| Hypothetical protein COLAER_00439 [Collinsella aerofaciens ATCC
           25986]
 gi|133776947|gb|EBA40767.1| Hypothetical protein COLAER_00439 [Collinsella aerofaciens ATCC
           25986]
          Length = 205

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 55/194 (28%), Positives = 103/194 (53%), Gaps = 4/194 (2%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P+ + ++ RG     IY  +L  R + V G IE  MA  +C Q+  L+A +P + I++++
Sbjct: 11  PLTMRESARGITLTSIYDEMLARRELSVMGNIETPMAHDLCQQIRLLDATDPSRPITIFV 70

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
            S GG V +G+AIYD M+    PI T C+  AASMG+++   G+       P+A +++H 
Sbjct: 71  ASAGGSVRSGLAIYDAMRLASCPIRTVCLEFAASMGAVIFMGGDDCR--MAPHAELMIHD 128

Query: 140 PSGG--FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           P       G A  ++  ++ +++ ++ L +I     G T + ++    +D  +SA  A +
Sbjct: 129 PLIPQGAGGSALALQETSRRLMQTRKTLTQILSDRSGLTPKRIQSLTAKDTYLSAERAVE 188

Query: 198 WGVVDKVLMSRIDI 211
            G   ++L +  ++
Sbjct: 189 LGFAHEILSTTKEV 202


>gi|254470249|ref|ZP_05083653.1| Clp protease [Pseudovibrio sp. JE062]
 gi|211960560|gb|EEA95756.1| Clp protease [Pseudovibrio sp. JE062]
          Length = 122

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 50/121 (41%), Positives = 76/121 (62%)

Query: 91  AIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASD 150
            I+D ++FI+P +    MG  AS G+L+  +  K  RF   N R LLHQPSGG  G A+D
Sbjct: 1   MIHDMIKFIQPEVRILGMGWVASAGALIYVSVPKERRFCTQNTRFLLHQPSGGAGGMATD 60

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           IE  A++I+K++ RLN+I+    G+  E +EK  DRD+ MS  E  ++G+V KV+ +  +
Sbjct: 61  IEIQAKEILKMRDRLNQIFADATGQPLERIEKDTDRDYWMSPDEGIEYGLVGKVINNVSE 120

Query: 211 I 211
           +
Sbjct: 121 L 121


>gi|237731146|ref|ZP_04561627.1| protease subunit of ATP-dependent Clp protease [Citrobacter sp.
           30_2]
 gi|226906685|gb|EEH92603.1| protease subunit of ATP-dependent Clp protease [Citrobacter sp.
           30_2]
          Length = 647

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 46/142 (32%), Positives = 72/142 (50%), Gaps = 2/142 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L+A      I+L+INSPGG V  G+AI++ ++     I+    G AASM S++   G   
Sbjct: 31  LKALGDITHINLHINSPGGDVFDGIAIFNALKHHGAAITVHIDGLAASMASVIAMVGNPV 90

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N  +++H+P G   G A+D+  +A  + K++  L   Y +  GKT EE+   LD
Sbjct: 91  --IMPENTMMMIHKPWGFAGGDANDMRDYADLLDKVESVLIPAYAEKTGKTTEEIAAMLD 148

Query: 186 RDHIMSASEACDWGVVDKVLMS 207
            +  M   E  + G  D+V  S
Sbjct: 149 DETWMDGKECLEHGFADQVTTS 170


>gi|317132778|ref|YP_004092092.1| peptidase S14 ClpP [Ethanoligenens harbinense YUAN-3]
 gi|315470757|gb|ADU27361.1| peptidase S14 ClpP [Ethanoligenens harbinense YUAN-3]
          Length = 248

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 80/166 (48%), Gaps = 4/166 (2%)

Query: 42  ERIVFVTGQIEDHMA--TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           +R +++ G+I D       +  Q+   E  + +  I+L+INSPGG V A   IY+ +   
Sbjct: 20  DRTLYLDGEISDETWYGDEVTPQVFKDELNSGKGNITLWINSPGGDVFAAAQIYNMLMDY 79

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
              ++      AAS  S++  AG K      P A +++H P+    G + ++++    + 
Sbjct: 80  PYDVTVKIDALAASAASVIAMAGTKVC--MSPVAMLMVHNPATIAIGDSEEMQKAIDMLS 137

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           ++K  +   Y    G +  ++ K +D +  M+A EA   G  D++L
Sbjct: 138 EVKESIMNAYEIKSGLSRNKISKLMDAETWMNAKEAKKLGFADEIL 183


>gi|319757818|gb|ADV69760.1| ClpP protease family protein [Streptococcus suis JS14]
          Length = 231

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 4/170 (2%)

Query: 43  RIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           R + + GQI  E      +  Q+   +      +I+L+INSPGG V A   IY+ +   K
Sbjct: 14  RTLRIEGQIADETWFGDEVTPQVFKNDLHAGNGDITLWINSPGGDVFAAAQIYNMLMDYK 73

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
             +     G AAS  S++  AG        P A +++H P     G+A D+++  + + +
Sbjct: 74  GDVHVVIDGLAASAASVIAMAGTTV--SMSPVAMMMIHNPWTVAQGEAKDMQKVIEMLGE 131

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           IK  +   Y    G +  ++   +D +   +A +A + G  DK+L  + +
Sbjct: 132 IKESIINAYELRTGLSRTKLSHLMDSESWFNAKKAVELGFADKILFDKQE 181


>gi|147821309|emb|CAN74592.1| hypothetical protein VITISV_041995 [Vitis vinifera]
          Length = 429

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 40/95 (42%), Positives = 64/95 (67%)

Query: 113 SMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKN 172
           SMG+ LLS G KG R++LPN+RI++HQP GG  G  +DI+  A +++  K  LN     +
Sbjct: 321 SMGAFLLSCGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLSYH 380

Query: 173 CGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
            G++ E++ +  DRD  MSA EA ++G++D V+++
Sbjct: 381 TGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVILN 415



 Score =  108 bits (269), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 48/96 (50%), Positives = 66/96 (68%), Gaps = 6/96 (6%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G  PMV E      R   + S+L + RI+   G ++D MA +I AQLL+L+A +P K+I 
Sbjct: 91  GPPPMVQE------RFQSVVSQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAVDPDKDIV 144

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAA 112
           +Y+NSPGG VTAGMAI+DTM+ I+P +ST C+G AA
Sbjct: 145 MYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAA 180


>gi|167630981|ref|YP_001681480.1| peptidase s14, clpp [Heliobacterium modesticaldum Ice1]
 gi|167593721|gb|ABZ85469.1| peptidase s14, clpp [Heliobacterium modesticaldum Ice1]
          Length = 237

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 81/167 (48%), Gaps = 4/167 (2%)

Query: 41  KERIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           +ER +++ G I  E      +  +L   E  +   +I+++INSPGG V A   IY+ +  
Sbjct: 13  EERTLYLNGPIAEETWWGDEVTPKLFKDELLSGSGDITVWINSPGGDVFAAAQIYNMLMD 72

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
               ++    G AAS  S++  AG  G  +  P + +++H PS    G + ++ R    +
Sbjct: 73  YSGNVTVKIDGLAASAASVIAMAG--GDVYMSPVSMLMIHNPSTIAIGDSEEMLRAKALL 130

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            ++K  +   Y    G +  ++   +D +  M+A +A + G  DK+L
Sbjct: 131 DEVKESIINAYELKSGLSRAKLSHLMDAETWMNAKKAVELGFADKIL 177


>gi|166235795|gb|ABY85699.1| ATP-dependent protease proteolytic subunit [Silene fruticosa]
          Length = 397

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 53/174 (30%), Positives = 103/174 (59%), Gaps = 1/174 (0%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
             ++Y+    +R++F+  ++++ +A  +   L++L  E+  ++I L+INSPGG + AG+ 
Sbjct: 216 WVELYTLTYHKRLLFLCDKLKNELANKLINLLIYLSTEDTTEDIFLFINSPGGFLGAGLG 275

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           +Y+T+QF+ P +ST  +G A S+ + +L  G    R A P A +++HQP+       + I
Sbjct: 276 LYNTIQFVPPQVSTIALGIAGSISAFVLVGGALSKRVAYPCAXVMMHQPASTKHKNKTRI 335

Query: 152 -ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
               + D++ I+  +  +Y++  GKT + + + ++R   MSA+EA   G+VD V
Sbjct: 336 CVMESFDLLTIRDMITNVYIQRTGKTKQVIYEDMERPFFMSATEAQVHGIVDHV 389


>gi|289609764|emb|CBI60390.1| unnamed protein product [Sordaria macrospora]
          Length = 187

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 54/102 (52%), Positives = 72/102 (70%)

Query: 114 MGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC 173
           MGS LL+AGE GMR AL NARI++HQPSGG  G ASDI+  A++I +IK R+N +YVK  
Sbjct: 1   MGSFLLAAGEPGMRVALTNARIMIHQPSGGAQGMASDIQIQAKEIQRIKDRMNALYVKYT 60

Query: 174 GKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
           GK  EE+E+ +DRD  + A EA  +G+VD+V   R    E++
Sbjct: 61  GKPLEEIERAMDRDTFLEAEEAKAFGLVDQVFDKRPGAPEEA 102


>gi|269469208|gb|EEZ80742.1| Protease subunit of ATP-dependent Clp protease [uncultured SUP05
           cluster bacterium]
          Length = 95

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 53/95 (55%), Positives = 73/95 (76%)

Query: 114 MGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC 173
           MG+LLL+AG KG RFALP+AR ++HQP GGFSGQASDI+ HA++I+K++ RLN I   + 
Sbjct: 1   MGALLLTAGAKGKRFALPHARCMIHQPLGGFSGQASDIDIHAKEILKVRERLNLILKNHT 60

Query: 174 GKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           G+  + ++K  DRD+ MSA EA  +G++DKVL  R
Sbjct: 61  GQNLKTIQKDTDRDNFMSADEASQYGLIDKVLTKR 95


>gi|313575379|emb|CBR26908.1| hypothetical protein [Streptococcus phage phi-SsUD.1]
          Length = 236

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 47/180 (26%), Positives = 82/180 (45%), Gaps = 9/180 (5%)

Query: 43  RIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           R + + GQI  E      +  Q+   +      +I+L+INSPGG V A   IY+ +   K
Sbjct: 19  RTLRIEGQIAEETWFGDEVTPQVFKNDLHAGSGDITLWINSPGGDVFAAAQIYNMLMDYK 78

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
             +     G AAS  S++  AG        P A +++H P     G+A D+++  + + +
Sbjct: 79  GDVHVVIDGLAASAASVIAMAGTTV--SMSPVAMMMIHNPWTVAQGEAKDMQKVIEMLGE 136

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL-----MSRIDIEEKS 215
           IK  +   Y    G +  ++   +D +   +A +A + G  DK+L       R++ E  S
Sbjct: 137 IKESIINAYELRTGLSRTKLSHLMDSESWFNAKKAVELGFADKILFDKQEEHRMETESYS 196


>gi|307258170|ref|ZP_07539920.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306863355|gb|EFM95288.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 675

 Score =  145 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 86/179 (48%), Gaps = 6/179 (3%)

Query: 27  NRGERSYDIYSRLLKERIVFVTGQIEDH--MATLICAQLLFLEAENPQKEISLYINSPGG 84
              +  +DI ++   +  + +  +I      A      L  L +    K+I L+I+SPGG
Sbjct: 9   GENKTWFDIKAKSNNQAEISIYDEIGGWGVSAQQFATDLKALGSNI--KQIDLHIHSPGG 66

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
            V  G+AI++ ++      + +  G AASM S++   G K       NA +++H+P G  
Sbjct: 67  SVFDGIAIFNLLKNHPANKTVYIDGLAASMASVIAMVGNKV--IMPENAMMMIHKPWGIQ 124

Query: 145 SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            G A D+ ++A  + K++  L   Y    GKT EE+ + L  +  M+  EA + G  D+
Sbjct: 125 GGDADDMRKYADLLDKLEATLIPAYASKTGKTEEELAQMLAVETWMNGKEAVEQGFADE 183


>gi|193875738|gb|ACF24505.1| chloroplast ATP-dependent Clp protease proteolytic subunit 3
           [Gymnochlora stellata]
          Length = 216

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 62/167 (37%), Positives = 97/167 (58%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           +L + I+F+ G++ D +A  I   +++L      K ++L INSPGG VT+G+A+YD+   
Sbjct: 49  MLNKEILFLYGEVNDTIADTIIKNIIYLNNTTTTKNLTLMINSPGGSVTSGLAMYDSFNL 108

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           +   I T C+  AASMG+ LL +G KG R    + RI++HQP GG  G  + IE  A ++
Sbjct: 109 VDMHIGTTCIALAASMGAFLLGSGYKGKRNGFNHCRIMIHQPLGGIVGSFNQIESQANEL 168

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           +  K  LN        +   +V +  DRD+ MS+ EA  +G++D VL
Sbjct: 169 LYYKLVLNSYISNFSSQAPVKVMRDCDRDYFMSSREAAKYGIIDNVL 215


>gi|159464779|ref|XP_001690619.1| inactive subunit of chloroplast ClpP complex [Chlamydomonas
           reinhardtii]
 gi|158280119|gb|EDP05878.1| inactive subunit of chloroplast ClpP complex [Chlamydomonas
           reinhardtii]
          Length = 415

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 96/187 (51%), Gaps = 11/187 (5%)

Query: 40  LKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG---------VVTAGM 90
             +RIV++   +   +  L+ A+LL+LE +     I + INS G            + G+
Sbjct: 57  FDQRIVYLGMPLVPAVTELMVAELLYLEKQGATLPIEMLINSSGTTRQDGEILSFDSEGV 116

Query: 91  AIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQ--A 148
           A+  TM FIK PIST  MG A     ++LS G KG R +LP++  ++ QP    +GQ  A
Sbjct: 117 ALTSTMGFIKNPISTVNMGLAVGWSCVVLSFGRKGWRKSLPHSLAMIQQPRVPPTGQRQA 176

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
            ++    ++++  KR L  ++    G   ++++  + R   M   +A ++G++D+++   
Sbjct: 177 IEVHIKWREVLDYKRELLRMFSLGTGLPVDKLDADMQRPLYMRPQDALEYGIIDEIIEPN 236

Query: 209 IDIEEKS 215
            D  EK+
Sbjct: 237 EDKAEKA 243


>gi|166235707|gb|ABY85615.1| ATP-dependent protease proteolytic subunit [Silene conica]
          Length = 247

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 100/225 (44%), Gaps = 41/225 (18%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
             +I + L ++RI+F+  +I+  +   I   LL L  EN  K+ +L+INS GG     + 
Sbjct: 23  WTEIQNFLYEKRILFIFEEIKPKVTCEITGLLLCLSNENEYKDFTLFINSAGGKTRDALP 82

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS------ 145
           IYDTMQ + P + T  +G AASMG+L+L  GE G R A PN RI +H P+  F       
Sbjct: 83  IYDTMQVVAPAVRTVGIGVAASMGALILLGGEMGKRAASPNCRIKIHLPASAFYTTDSDS 142

Query: 146 ----------------------------------GQASDIERHAQDIVKIKRRLNEIYVK 171
                                                 D      ++++++    +IY K
Sbjct: 143 NSDSDSNSDSTSDSNSDTDKKKKEKDPKKKKEQSRSVEDFSDGVGEMLRLREEFVKIYAK 202

Query: 172 NCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
              K    +EK L R   MS+ EA  +G++D  L  + D ++  K
Sbjct: 203 RTQKPISVIEKDLARGLFMSSEEAKAYGIIDT-LHYKFDFKKTIK 246


>gi|307103436|gb|EFN51696.1| hypothetical protein CHLNCDRAFT_139949 [Chlorella variabilis]
          Length = 229

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 59/200 (29%), Positives = 93/200 (46%), Gaps = 33/200 (16%)

Query: 6   CAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF 65
           CA+++ + +       V++    GE   D+Y  LL+ RI+F+  +I D +A  + A LL 
Sbjct: 62  CARRERDPILAP----VIQMGPGGEDVVDLYGYLLRNRIIFLNQRISDQVACQVVASLLA 117

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L++ N ++EI +YIN P G   A ++I DTM+ IK                         
Sbjct: 118 LDSLNEEEEIKMYINCPQGSPYAVVSILDTMRAIKA------------------------ 153

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                PN RILL QP GG  G A +    A ++ +  R +     +  G   E VE   D
Sbjct: 154 -----PNTRILLQQPMGGLQGSADECNITATELNRNMRVMYRFLSEATGLPVETVEMECD 208

Query: 186 RDHIMSASEACDWGVVDKVL 205
           RD+ +   +A   G++D V+
Sbjct: 209 RDNFLGPEQAIALGLIDSVI 228


>gi|297837933|ref|XP_002886848.1| hypothetical protein ARALYDRAFT_475559 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332689|gb|EFH63107.1| hypothetical protein ARALYDRAFT_475559 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 118

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/116 (40%), Positives = 72/116 (62%), Gaps = 1/116 (0%)

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQA 148
           MAIYDTMQF++P + T CMG AAS+ S +L  G    R A P+A +++HQP S  +  Q 
Sbjct: 1   MAIYDTMQFVRPDVQTICMGLAASIASFILVGGAITKRIAFPHAWVMIHQPASSFYEAQT 60

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            +    A++++K++  +  +YV+  GK    V + ++RD  MSA+EA   G+VD V
Sbjct: 61  GEFILEAEELLKLRETITRVYVQRTGKPIWVVSEDMERDVFMSATEAQAHGIVDLV 116


>gi|324528845|gb|ADY48957.1| ATP-dependent Clp protease proteolytic subunit 1 [Ascaris suum]
          Length = 122

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 62/98 (63%), Positives = 83/98 (84%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +YINSPGG VTAG+ IYDTMQ+I  P++T+C+GQA+SMGSLLL AGEKGMR +LPN+RI+
Sbjct: 1   MYINSPGGSVTAGLGIYDTMQYISAPVATWCIGQASSMGSLLLCAGEKGMRSSLPNSRIM 60

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCG 174
           +HQPSGG  G ASD+   A++I ++++RLNE+Y K+ G
Sbjct: 61  VHQPSGGAEGTASDVIIRAEEIARLRKRLNELYAKHTG 98


>gi|227498309|ref|ZP_03928459.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226903771|gb|EEH89689.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 235

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 79/175 (45%), Gaps = 4/175 (2%)

Query: 42  ERIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
            R +++ GQI  E      +  +    E      +I+L+INSPGG   A   IY+ +   
Sbjct: 20  NRTLYLDGQISDETWWGDEVTPKAFKDELNAGSGDITLWINSPGGDCFAAAQIYNLLMDY 79

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
              ++    G AAS  S++  AG K      P A +++H P+    G  +++E+    + 
Sbjct: 80  PGNVTVKIDGLAASAASVIAMAGTKVC--MSPVAMLMIHNPATLAYGDQAEMEKTIGMLS 137

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           ++K  +   Y    G    ++   +D +  ++A +A + G  D++L  +    E+
Sbjct: 138 EVKESIINAYEIKSGLARTKISHMMDDETWLNAKKAVELGFADEILFDQKKGNEE 192


>gi|167856520|ref|ZP_02479231.1| putative Clp-like protease [Haemophilus parasuis 29755]
 gi|167852352|gb|EDS23655.1| putative Clp-like protease [Haemophilus parasuis 29755]
          Length = 655

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 7/174 (4%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLL--FLEAENPQKEISLYINSPGGVVTAG 89
            Y I ++  ++  + +  +I       I AQ     L+     K I L+I+SPGG V  G
Sbjct: 3   WYSIKAKSKEKAEISIMDEIGGW---GISAQQFAKDLKNLGDLKHIDLHIHSPGGSVFDG 59

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
           +AIY+ ++      + +  G AASM S++   G+        NA +++H+P G   G A 
Sbjct: 60  IAIYNLLKNHPASKTVYIDGLAASMASVIAMVGDPV--IMPKNAMMMIHKPWGIQGGDAE 117

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
           D+ ++A  + KI+  L   Y +  GK+ EE+ + L  +  ++A E  + G  DK
Sbjct: 118 DMRKYADLLDKIENTLIPAYAEKTGKSPEELAEMLKEETWLTAEECVEQGFADK 171


>gi|300853555|ref|YP_003778539.1| phage related protease [Clostridium ljungdahlii DSM 13528]
 gi|300433670|gb|ADK13437.1| phage related protease [Clostridium ljungdahlii DSM 13528]
          Length = 279

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 43/153 (28%), Positives = 75/153 (49%), Gaps = 4/153 (2%)

Query: 54  HMATLICAQLLF--LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQA 111
                I  +     L++    K +++YINS GG V AG AIY  ++     ++ +  G A
Sbjct: 32  WWGDEITPKNFKEELDSLGDIKTLNVYINSGGGDVFAGQAIYSMLKRHSATVNVYVDGLA 91

Query: 112 ASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVK 171
           AS+ S++  AG+        NA +++H P     G A D  + A D+ K++  +  +Y  
Sbjct: 92  ASIASIIAMAGDSVK--MPKNAMLMVHNPWSYAMGNAKDFRKLADDLDKVRESMISVYED 149

Query: 172 NCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             G   E + + LD +  M+A EA ++G  D++
Sbjct: 150 KTGMEKESIVELLDAETWMTAEEAVEFGFADEI 182


>gi|326519849|dbj|BAK03849.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 228

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 54/167 (32%), Positives = 96/167 (57%), Gaps = 4/167 (2%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
           SE+    L+P ++  T  G  S D+ + LL  RI+F+   +   +A  + +QL+ L A +
Sbjct: 66  SENENPPLMPAIM--TPGG--SLDLATVLLGNRIIFIGQYVNSQVAQRVISQLVSLSAID 121

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
            + ++ +Y+N PGG + + +AIYD M +I P + T C G  AS  +++L+ GEKGMR+A+
Sbjct: 122 EEGDVLIYLNCPGGSLYSILAIYDCMSWITPKVGTVCFGVVASQAAIILAGGEKGMRYAM 181

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTY 177
           PNAR+++HQP GG  G   ++ R   + +  +     + +    ++ 
Sbjct: 182 PNARVMIHQPQGGSEGNTEEVRRQVGETIYARDLTKCLLLSRDNQSI 228


>gi|331085734|ref|ZP_08334817.1| hypothetical protein HMPREF0987_01120 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406657|gb|EGG86162.1| hypothetical protein HMPREF0987_01120 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 235

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 85/170 (50%), Gaps = 4/170 (2%)

Query: 41  KERIVFVTGQIEDHMA--TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           + R +F+ G+I D       +  ++   E ++ + +I+++INSPGG V A   IY+ +  
Sbjct: 15  ESRTLFLNGEISDETWYGDEVTPKMFKEELQDGEGDITVWINSPGGDVFAAAQIYNMLMD 74

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
            K  ++    G AAS  S++  AG +      P A +++H P+    G +S++++    +
Sbjct: 75  YKGNVTVKIDGLAASAASVIAMAGTEVQ--MSPVAMMMIHNPATIAIGDSSEMKKAIDML 132

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
            ++K  +   Y    G +   +   +D +   +A +A + G  DK+L S+
Sbjct: 133 DEVKESIMNAYEIKTGLSRSRISHLMDAESWFNAKKAVELGFADKLLFSK 182


>gi|331004493|ref|ZP_08327963.1| Clp protease [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330410671|gb|EGG90094.1| Clp protease [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 201

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 61/183 (33%), Positives = 101/183 (55%), Gaps = 5/183 (2%)

Query: 25  QTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG 84
           +TN G     + +R   +R + + G I D +A     ++L L  E   + I++ INS GG
Sbjct: 8   RTNCGISQVSLETRFFDKRCININGDITDILALDFTDKILELNLE-SDRPITILINSLGG 66

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP--SG 142
            + +G+ +YD +   K PI   C G+A SMG++L +   +  R+ LPN+ ++LHQP   G
Sbjct: 67  EINSGLLMYDAIVGSKAPIRMVCRGRAYSMGAILFACANE--RYMLPNSELMLHQPILGG 124

Query: 143 GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
             +G AS I+  +  +++ KR+LN +  K+ GKT EE++     DH     EA  + + D
Sbjct: 125 NVAGNASSIKNISDSMLETKRKLNGLLSKHIGKTEEEIDIATSFDHYFLPDEAIGFNLCD 184

Query: 203 KVL 205
           KV+
Sbjct: 185 KVI 187


>gi|121607361|ref|YP_995168.1| endopeptidase Clp [Verminephrobacter eiseniae EF01-2]
 gi|121552001|gb|ABM56150.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Verminephrobacter eiseniae EF01-2]
          Length = 229

 Score =  141 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 65/220 (29%), Positives = 104/220 (47%), Gaps = 31/220 (14%)

Query: 27  NRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVV 86
             G  S  +    +  R VF+ G I+  MA     QL  L + N    I ++I+SPGG V
Sbjct: 11  PPGTMSAKLMEYAINARKVFIIGTIDHKMAKEAVQQLHILASINDD-PIYVFISSPGGHV 69

Query: 87  TAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ----PSG 142
            +G  I+D ++FI P +     G  AS G+L+  A +K  R++LPN   LLH     P+G
Sbjct: 70  ESGDLIFDAIRFITPKVIVVSSGWVASAGALIYVAADKENRYSLPNTHFLLHMKEIIPAG 129

Query: 143 --GFSGQASD---IERHAQDIVK---------------------IKRRLNEIYVKNCGKT 176
              ++  A D    ER AQ +                       ++ RLN I+ +  G+T
Sbjct: 130 EMTYTETADDRAARERFAQFVSSSYRKKPPEPVNKSLHEYRTNVMRARLNRIFAEATGQT 189

Query: 177 YEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
            E++      D  MSA +A ++G+V ++++S  +I  + K
Sbjct: 190 LEKITADTGHDFWMSAEQAVEYGLVHEIIVSEKEIRSQKK 229


>gi|302838584|ref|XP_002950850.1| hypothetical protein VOLCADRAFT_74777 [Volvox carteri f.
           nagariensis]
 gi|300263967|gb|EFJ48165.1| hypothetical protein VOLCADRAFT_74777 [Volvox carteri f.
           nagariensis]
          Length = 421

 Score =  141 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 95/187 (50%), Gaps = 11/187 (5%)

Query: 40  LKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG---------VVTAGM 90
             +RIV++   +   +  L+ A+LL+LE +     I + INS G            + G+
Sbjct: 59  FDQRIVYLGMPLVPAVTELMVAELLYLEKQGATLPIEMLINSSGTTRQDGEILSFDSEGV 118

Query: 91  AIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQ--A 148
           A+  TM F+K PIST  MG A     ++LS G KG R +LP++  ++ QP    +GQ  A
Sbjct: 119 ALTSTMGFVKNPISTVNMGLAVGWSCVVLSFGRKGWRKSLPHSLAMIQQPRVPPTGQRQA 178

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
            ++    ++++  KR L  +     G   ++++  + R   M   +A D+G++D+++   
Sbjct: 179 IEVHIKWREVLDYKRELLRMMSIGTGLPVDKLDADMQRPLYMRPRDALDYGIIDEIIQPN 238

Query: 209 IDIEEKS 215
            +  EK+
Sbjct: 239 AEKAEKA 245


>gi|210630760|ref|ZP_03296584.1| hypothetical protein COLSTE_00469 [Collinsella stercoris DSM 13279]
 gi|210160356|gb|EEA91327.1| hypothetical protein COLSTE_00469 [Collinsella stercoris DSM 13279]
          Length = 193

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 93/174 (53%), Gaps = 3/174 (1%)

Query: 33  YDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI 92
            D+ S L   R++ +  Q+   + + + A +L LE ++P+  I+L ++SPGG V AG+ +
Sbjct: 20  LDVLSELYNSRVLMLNEQVTPAVCSQLIANMLVLERKDPEAPITLLVSSPGGDVYAGLGL 79

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS-GQASDI 151
            D M+ +  P+ T   G  ASM S++L+ G    R A P+  ILLHQ   G    Q +DI
Sbjct: 80  IDVMRDLSCPVDTVGYGLVASMASVILACGRH--RSAYPHTNILLHQLMTGAGMSQQTDI 137

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
              A     ++ +L+E+  +    + +EV +  +RD       A + GV+D+V+
Sbjct: 138 SIVANHAASLRAKLDEMLAERMSLSADEVHELTERDCWCDVGRALELGVIDEVI 191


>gi|255069967|ref|XP_002507065.1| predicted protein [Micromonas sp. RCC299]
 gi|226522340|gb|ACO68323.1| predicted protein [Micromonas sp. RCC299]
          Length = 247

 Score =  141 bits (356), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 66/203 (32%), Positives = 112/203 (55%), Gaps = 6/203 (2%)

Query: 6   CAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF 65
                ++ +  G+VP+ V  T+       + S LL +RI+ +  +I++ +AT +CA+LL 
Sbjct: 39  MPAIRAQKLNDGVVPVAVNTTHG---PMGLTSALLLDRIIIIGDRIDEDVATRVCAELLA 95

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTM---QFIKPPISTFCMGQAASMGSLLLSAG 122
           L  E+P K+I L++N+  G       I D M   Q     IS   MG  A   ++LL+AG
Sbjct: 96  LSYEDPDKDIRLFVNATAGTQYCVQTILDMMEYIQSKGVDISVVGMGCVAGPPAMLLAAG 155

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
            KG R A+P+ RI+L QP GG SG + ++   A+++ +  R    ++ K  GK+++++ +
Sbjct: 156 TKGKRLAMPSCRIILSQPLGGLSGTSYEVRIQAKELSRNARMQVAVFAKFTGKSFDDMGE 215

Query: 183 TLDRDHIMSASEACDWGVVDKVL 205
            L RD  MS  EA +  ++D V+
Sbjct: 216 YLVRDTYMSPQEAKELNLIDGVI 238


>gi|308807038|ref|XP_003080830.1| ribulose-bisphosphate carboxy (ISS) [Ostreococcus tauri]
 gi|116059291|emb|CAL54998.1| ribulose-bisphosphate carboxy (ISS) [Ostreococcus tauri]
          Length = 604

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 69/105 (65%), Positives = 85/105 (80%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            LVPMV+EQTNRGER +DIYSRLLKERIVF+ G I+D  ++L  AQLLFLE+ +P   I 
Sbjct: 411 ALVPMVLEQTNRGERVFDIYSRLLKERIVFINGPIDDTASSLAVAQLLFLESASPTAPIW 470

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSA 121
           +Y+NSPGG VTAG+ IYDTMQ++ PPI T C+GQA+SM SLLL+ 
Sbjct: 471 MYVNSPGGSVTAGLGIYDTMQYVSPPIHTLCVGQASSMASLLLAC 515


>gi|145629849|ref|ZP_01785642.1| putative Clp-like protease [Haemophilus influenzae 22.1-21]
 gi|144977753|gb|EDJ87697.1| putative Clp-like protease [Haemophilus influenzae 22.1-21]
          Length = 680

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 50/179 (27%), Positives = 89/179 (49%), Gaps = 4/179 (2%)

Query: 26  TNRGERSYDIYSRLLKERIVFVTGQIEDH-MATLICAQLLFLEAENPQKEISLYINSPGG 84
               +  Y I ++      + +  +I    ++    AQ L  +  N  K+I+L+I+SPGG
Sbjct: 19  KTNNQSWYSIKAKANDTAEISIYDEIGFWGVSAASFAQDLK-DCGNNIKQINLHIHSPGG 77

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
            V  G+AIY+ ++     ++ +  G AASM S++  AG +       NA +++H+P G  
Sbjct: 78  DVFDGIAIYNLLKNHPANVTVYIDGLAASMASVIAMAGNEV--IMPENAMMMIHKPWGIQ 135

Query: 145 SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            G A D+ ++A  + K++  L   Y    GKT EE+ + L  +  ++  E  + G  DK
Sbjct: 136 GGDAEDMRKYADLLDKVENTLIPAYASKTGKTPEELAEMLSAETWLNGKECVEQGFADK 194


>gi|219870832|ref|YP_002475207.1| Clp protease-like protein [Haemophilus parasuis SH0165]
 gi|219691036|gb|ACL32259.1| Clp protease-like protein [Haemophilus parasuis SH0165]
          Length = 655

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 7/174 (4%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLL--FLEAENPQKEISLYINSPGGVVTAG 89
            Y I ++  ++  + +  +I       I AQ     L+     K I L+I+SPGG V  G
Sbjct: 3   WYSIKAKSKEKAEISIMDEIGGW---GISAQQFAKDLKNLGDIKHIDLHIHSPGGSVFDG 59

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
           +AIY+ ++      + +  G AASM S++   G+        NA +++H+P G  SG A 
Sbjct: 60  IAIYNLLKNHPASKTVYIDGLAASMASVIAMLGDPV--IMPKNAMMMIHKPWGIQSGDAE 117

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
           D+ ++A  + KI+      Y +  GK+ EE+ + L  +  ++A E  + G  DK
Sbjct: 118 DMRKYADLLDKIENTTIPAYAEKTGKSPEELAEMLKEETWLTAEECVEQGFADK 171


>gi|145640030|ref|ZP_01795627.1| putative Clp-like protease [Haemophilus influenzae PittII]
 gi|145270863|gb|EDK10783.1| putative Clp-like protease [Haemophilus influenzae PittII]
          Length = 680

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/179 (27%), Positives = 89/179 (49%), Gaps = 4/179 (2%)

Query: 26  TNRGERSYDIYSRLLKERIVFVTGQIEDH-MATLICAQLLFLEAENPQKEISLYINSPGG 84
               +  Y I ++      + +  +I    ++    AQ L  +  N  K+I+L+I+SPGG
Sbjct: 19  KTNNQSWYSIKAKANDTAEISIYDEIGFWGVSAASFAQDLK-DCGNNIKQINLHIHSPGG 77

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
            V  G+AIY+ ++     ++ +  G AASM S++  AG +       NA +++H+P G  
Sbjct: 78  DVFDGIAIYNLLKNHPANVTVYIDGLAASMASVIAMAGNEV--IMPENAMMMIHKPWGIQ 135

Query: 145 SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            G A D+ ++A  + K++  L   Y    GKT EE+ + L  +  ++  E  + G  DK
Sbjct: 136 GGDAEDMRKYADLLDKVENTLIPAYASKTGKTPEELAEMLSAETWLNGKECVEQGFADK 194


>gi|311279176|ref|YP_003941407.1| peptidase S14 ClpP [Enterobacter cloacae SCF1]
 gi|308748371|gb|ADO48123.1| peptidase S14 ClpP [Enterobacter cloacae SCF1]
          Length = 669

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L+A      I+L+INSPGG V  G+AI++ ++     I+    G AASM S++   G   
Sbjct: 54  LKALGDVTHINLHINSPGGDVFDGIAIFNALKHHGAAITVHIDGLAASMASVIAMVGNPV 113

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N  +++H+P G   G A+D+  +A  + K++  L   Y    GK+ E++   L+
Sbjct: 114 --IMPENTMMMIHKPWGFAGGDANDMRDYADLLDKVESVLIPAYADKTGKSTEDIAAMLE 171

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  M  +E    G  D+V
Sbjct: 172 DETWMDGAECLALGFADQV 190


>gi|212913328|gb|ACJ38659.1| caseinolytic ATP-dependent protease [Shuteria involucrata var.
           vestita]
          Length = 159

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 51/152 (33%), Positives = 89/152 (58%), Gaps = 1/152 (0%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
             D+Y+RL ++R++F+  +++  ++  I   + FL  E+P +++ L+IN PGG V +G+A
Sbjct: 8   WVDLYNRLYRQRLLFLGKELDAELSNQITGLMAFLSIEDPSEDLFLFINCPGGGVMSGIA 67

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS-GQASD 150
           +YD M  +   + T CM  AASMGS +L  GE   R A P+ARI++HQP+  F  G    
Sbjct: 68  VYDMMHHVDADVQTVCMALAASMGSFILLGGEITERLAFPHARIMIHQPASSFYKGHMDA 127

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
           +     +I++I+  +   Y++  GK+   +  
Sbjct: 128 VFMEFGEILRIRESIIRTYMQRTGKSXWIISH 159


>gi|293394114|ref|ZP_06638415.1| gifsy-2 prophage resembles Clp protease [Serratia odorifera DSM
           4582]
 gi|291423374|gb|EFE96602.1| gifsy-2 prophage resembles Clp protease [Serratia odorifera DSM
           4582]
          Length = 650

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/139 (32%), Positives = 71/139 (51%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L+A     +I+L+INSPGG V  G+AI++ ++     I+    G AASM S++   G   
Sbjct: 31  LQALGDITQINLHINSPGGDVFDGIAIFNALKNHGAAITVHIDGLAASMASVIAMVGNPV 90

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N  +++H+P G   G A+D+  +A  + K++  L   YV   GK+ +EV   LD
Sbjct: 91  --IMPENTMMMIHKPWGFAGGDANDMRNYADLLDKVENVLIPAYVAKTGKSADEVAAMLD 148

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  M   E    G  D+V
Sbjct: 149 DETWMDGKECLALGFADQV 167


>gi|237738653|ref|ZP_04569134.1| peptidase S14 ClpP [Fusobacterium sp. 2_1_31]
 gi|229424136|gb|EEO39183.1| peptidase S14 ClpP [Fusobacterium sp. 2_1_31]
          Length = 358

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 5/166 (3%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLE--AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP 101
           +V       D     +C + +  E       + I+++INSPGG V A +AI +T++  K 
Sbjct: 19  VVMYGTIGSDEYWDDVCDKTIKEEIGNLGDVENINVHINSPGGSVFAAVAIANTLKNHKA 78

Query: 102 PISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKI 161
            ++ F  G AAS  +++ SA +        NA  ++H P     G   ++E+    + K+
Sbjct: 79  KVTAFIDGLAASAATIITSACDVVK--MPKNAMFMIHNPLTWAYGNKQELEKTGILLDKV 136

Query: 162 KRRLNEIY-VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           K  + E Y  K  GKT EE+   +D +   +A EA ++G +D+++ 
Sbjct: 137 KDSILETYLAKAKGKTKEELSALMDEEKWFNAEEAKEYGFIDEIVD 182


>gi|145635838|ref|ZP_01791529.1| putative Clp-like protease [Haemophilus influenzae PittAA]
 gi|145266895|gb|EDK06908.1| putative Clp-like protease [Haemophilus influenzae PittAA]
          Length = 657

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 6/177 (3%)

Query: 29  GERSYDIYSRLLKERIVFVTGQIEDH--MATLICAQLLFLEAENPQKEISLYINSPGGVV 86
            +  Y I ++      + +  +I      A      L  L   N  K+I+L+I+SPGG V
Sbjct: 3   NQSWYSIKAKANDTAEISIYDEIGFWGVTAQSFSKDLKTL--GNNLKQINLHIHSPGGDV 60

Query: 87  TAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG 146
             G+AIY+ ++     ++ +  G AASM S++  AG +       NA +++H+P G   G
Sbjct: 61  FDGIAIYNLLKNHPANVTVYIDGLAASMASVIAMAGNEV--IMPENAMMMIHKPWGIQGG 118

Query: 147 QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            A D+ ++A  + K++  L   Y    GK  EE+ + L  +  ++  E  + G  DK
Sbjct: 119 DAEDMRKYADLLDKVENTLIPAYANKTGKPPEELAEMLSVETWLNGKECVEQGFADK 175


>gi|115391925|ref|YP_778514.1| ATP-dependent Clp protease proteolytic subunit [Jasminum
           nudiflorum]
 gi|110456246|gb|ABG74651.1| ATP-dependent protease catalytic subunit [Jasminum nudiflorum]
          Length = 219

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 58/156 (37%), Positives = 90/156 (57%), Gaps = 2/156 (1%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
            +  R +   D+YS+L    I+F+   I+  +A  + A +++L++ +P+    +YINSPG
Sbjct: 40  RKAERKQAWTDLYSKLYHGGILFLGDVIDTELANELIAAMVYLDSHHPEIRCYMYINSPG 99

Query: 84  GVVTAGMAIYDTMQF-IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS- 141
           G V  G+AIYD M+  +   + T   GQAASM SLLL++GEKG R ALP++ I+LH+PS 
Sbjct: 100 GGVFDGLAIYDAMKNIMTQEVRTTVYGQAASMASLLLASGEKGHRIALPHSEIMLHEPSM 159

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTY 177
               G+   +      +  +K R+  IYV   GK  
Sbjct: 160 SPTRGKVEFLLSECDVLASLKERMLNIYVLETGKDR 195


>gi|301168948|emb|CBW28543.1| atp-dependent clp protease proteolytic subunit [Haemophilus
           influenzae 10810]
          Length = 662

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 43/131 (32%), Positives = 73/131 (55%), Gaps = 2/131 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K+I+L+I+SPGG V  G+AIY+ ++     ++ +  G AASM S++  AG +       N
Sbjct: 48  KQINLHIHSPGGDVFDGIAIYNLLKNHPANVTVYIDGLAASMASVIAMAGNEV--IMPEN 105

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A +++H+P G   G A D+ ++A  + K++  L   Y    GKT EE+ + L  +  ++ 
Sbjct: 106 AMMMIHKPWGIQGGDAEDMRKYADLLDKVENTLIPAYASKTGKTPEELAEMLSAETWLNG 165

Query: 193 SEACDWGVVDK 203
            E  + G  DK
Sbjct: 166 KECVEQGFADK 176


>gi|220930200|ref|YP_002507109.1| peptidase S14 ClpP [Clostridium cellulolyticum H10]
 gi|220000528|gb|ACL77129.1| peptidase S14 ClpP [Clostridium cellulolyticum H10]
          Length = 229

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 83/175 (47%), Gaps = 4/175 (2%)

Query: 41  KERIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           +ER +++ G I  E      +  ++   E      +I+++INSPGG V A   IY+ +  
Sbjct: 13  EERTLYLNGVISEETWWGDEVTPKIFKDELLAGTGDITVWINSPGGDVFAAAQIYNMLME 72

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
               ++    G AAS  S++  AG  G  +  P + +++H PS    G + ++ R    +
Sbjct: 73  YTGKVTVKIDGLAASAASVIAMAG--GDVYMSPVSMLMIHNPSTIAIGDSEEMLRAKALL 130

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
            ++K  +   Y    G +  ++   +D +  M+A++A + G  DK++    +  +
Sbjct: 131 DEVKESIINAYELKTGLSRTKLSHLMDAESWMNANKAIELGFADKIMFMESETPD 185


>gi|300954440|ref|ZP_07166892.1| Clp protease [Escherichia coli MS 175-1]
 gi|300318590|gb|EFJ68374.1| Clp protease [Escherichia coli MS 175-1]
          Length = 637

 Score =  138 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 47/143 (32%), Positives = 77/143 (53%), Gaps = 4/143 (2%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L+A      I+L I+SPGG V  G+AIY+ ++     I+ +  G AASM S++  AG+  
Sbjct: 38  LKALGDVSHINLRIHSPGGDVFEGIAIYNLLRNHPADITVYIDGVAASMASVVAMAGD-- 95

Query: 126 MRFALP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
            R  +P NA +++H+P G   G A D+  +A  + K++  L   Y +  GK+ +E+   L
Sbjct: 96  -RVVMPENAMMMIHKPWGISGGNAGDMRDYADLLDKVETVLIPAYARKTGKSAQEITAML 154

Query: 185 DRDHIMSASEACDWGVVDKVLMS 207
           + +  M   E    G  D++L S
Sbjct: 155 EDETWMDGKECLKHGFADELLPS 177


>gi|42779480|ref|NP_976727.1| ClpP protease family protein [Bacillus cereus ATCC 10987]
 gi|42735396|gb|AAS39335.1| ClpP protease family protein [Bacillus cereus ATCC 10987]
          Length = 229

 Score =  138 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 83/175 (47%), Gaps = 4/175 (2%)

Query: 41  KERIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           +ER +++ G I  E      +  ++   E      +I+++INSPGG V A   IY+ +  
Sbjct: 13  EERTLYLNGVISEETWWGDEVTPKIFKDELLAGTGDITVWINSPGGDVFAAAQIYNMLME 72

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
               ++    G AAS  S++  AG  G  +  P + +++H PS    G + ++ R    +
Sbjct: 73  YTGKVTVKIDGLAASAASVIAMAG--GDVYMSPVSMLMIHNPSTIAIGDSEEMLRAKALL 130

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
            ++K  +   Y    G +  ++   +D +  M+A++A + G  DK++    +  +
Sbjct: 131 DEVKESIINAYELKTGLSRTKLSHLMDAESWMNANKAIELGFADKIMFMESEAPD 185


>gi|323935653|gb|EGB31970.1| Clp protease [Escherichia coli E1520]
          Length = 637

 Score =  138 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 47/143 (32%), Positives = 77/143 (53%), Gaps = 4/143 (2%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L+A      I+L I+SPGG V  G+AIY+ ++     I+ +  G AASM S++  AG+  
Sbjct: 38  LKALGDVSHINLRIHSPGGDVFEGIAIYNLLRNHPADITVYIDGVAASMASVVAMAGD-- 95

Query: 126 MRFALP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
            R  +P NA +++H+P G   G A D+  +A  + K++  L   Y +  GK+ +E+   L
Sbjct: 96  -RVVMPENAMMMIHKPWGISGGNAGDMRDYADLLDKVETVLVPAYARKTGKSAQEITAML 154

Query: 185 DRDHIMSASEACDWGVVDKVLMS 207
           + +  M   E    G  D++L S
Sbjct: 155 EDETWMDGKECLKHGFADELLPS 177


>gi|300764715|ref|ZP_07074706.1| hypothetical protein LMHG_11061 [Listeria monocytogenes FSL N1-017]
 gi|300514601|gb|EFK41657.1| hypothetical protein LMHG_11061 [Listeria monocytogenes FSL N1-017]
          Length = 257

 Score =  138 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 4/165 (2%)

Query: 42  ERIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           +R +++ GQI         I  QL   E  +    I+++INSPGG   A   IY+ ++  
Sbjct: 31  DRTLYLNGQIAEVSWFDDDITPQLFKDELMSGDGNITVWINSPGGDCVAAAQIYNMLKEY 90

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
              ++    G AAS  S++  AG+K      P A +++H PS    G   D+++    + 
Sbjct: 91  SGDVTIKIDGLAASAASVIAMAGDKV--VMSPVAMMMIHNPSTVAFGDRVDMQKAMAMLD 148

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           ++K  +   Y    G +  ++   +D +  M A  A D G  D V
Sbjct: 149 EVKESIINAYEIKTGMSRTKLAHMMDAETWMDARSAVDLGFADDV 193


>gi|191172046|ref|ZP_03033590.1| ATP-dependent protease [Escherichia coli F11]
 gi|300991767|ref|ZP_07179630.1| Clp protease [Escherichia coli MS 200-1]
 gi|190907573|gb|EDV67168.1| ATP-dependent protease [Escherichia coli F11]
 gi|300305521|gb|EFJ60041.1| Clp protease [Escherichia coli MS 200-1]
 gi|324013002|gb|EGB82221.1| Clp protease [Escherichia coli MS 60-1]
          Length = 637

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 47/143 (32%), Positives = 77/143 (53%), Gaps = 4/143 (2%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L+A      I+L I+SPGG V  G+AIY+ ++     I+ +  G AASM S++  AG+  
Sbjct: 38  LKALGDVSHINLRIHSPGGDVFEGIAIYNLLRNHPADITVYIDGVAASMASVVAMAGD-- 95

Query: 126 MRFALP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
            R  +P NA +++H+P G   G A D+  +A  + K++  L   Y +  GK+ +E+   L
Sbjct: 96  -RVVMPENAMMMIHKPWGISGGNAGDMRDYADLLDKVETVLIPAYARKTGKSAQEITAML 154

Query: 185 DRDHIMSASEACDWGVVDKVLMS 207
           + +  M   E    G  D++L S
Sbjct: 155 EDETWMDGKECLKHGFADELLPS 177


>gi|298248117|ref|ZP_06971922.1| Endopeptidase Clp [Ktedonobacter racemifer DSM 44963]
 gi|297550776|gb|EFH84642.1| Endopeptidase Clp [Ktedonobacter racemifer DSM 44963]
          Length = 183

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 57/148 (38%), Positives = 96/148 (64%), Gaps = 2/148 (1%)

Query: 38  RLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97
           + LK+ I+ +   IED +A  I  QL +L++E+  ++I LY+NSPGG + AG+AIYD +Q
Sbjct: 15  QFLKKFILCINTAIEDSVANSIITQLFYLQSEDATRDIHLYLNSPGGNIYAGLAIYDAIQ 74

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
            ++P I+T+C+G+ +   +LLL+AGEKG R+ALP + I L Q      G  + IE  A++
Sbjct: 75  SLRPEIATYCLGRTSGFATLLLAAGEKGRRYALPTSTIGLTQV--VAGGGPAAIEITARE 132

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
           I+ ++R L  ++VK   ++   + + +D
Sbjct: 133 ILHLRRLLVNLFVKQTRQSDATIREDMD 160


>gi|238762757|ref|ZP_04623726.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
           kristensenii ATCC 33638]
 gi|238699062|gb|EEP91810.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
           kristensenii ATCC 33638]
          Length = 647

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 55/183 (30%), Positives = 87/183 (47%), Gaps = 13/183 (7%)

Query: 25  QTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG 84
               GE+S DIY  + +E  +   G      A+        L+A      I+L I+SPGG
Sbjct: 1   MKASGEKSADIY--IYEE--IGYWGVTARQFASS-------LKALGDIDHINLRIHSPGG 49

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
            V  G+AIY+ +       + +  G AASM S++   G         NA +++H+P G  
Sbjct: 50  DVFEGIAIYNLLNSHPASKTVYIDGLAASMASVIAMVGNPV--IMPENAMMMIHKPWGIT 107

Query: 145 SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            G A+D+  +A  + K++  L   Y K  GKT EE+   L  +  ++A E  + G  D++
Sbjct: 108 GGDANDMRDYADLLDKVEGVLIPSYAKKTGKTPEELAVMLGEETWLTAQECVEHGFADQL 167

Query: 205 LMS 207
           L S
Sbjct: 168 LPS 170


>gi|282599814|ref|ZP_05971986.2| gifsy-2 prophage resembles Clp protease [Providencia rustigianii
           DSM 4541]
 gi|282567947|gb|EFB73482.1| gifsy-2 prophage resembles Clp protease [Providencia rustigianii
           DSM 4541]
          Length = 683

 Score =  138 bits (347), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 44/141 (31%), Positives = 76/141 (53%), Gaps = 2/141 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+I+SPGG V  G+AIY+ ++     I+ +  G AASM S++   G++ 
Sbjct: 62  LIALGNLSHINLHIHSPGGEVFEGIAIYNQLKNHNASITVYIDGLAASMASVIAMVGDEV 121

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 NA +++H+P G   G A D+  +A  + K++  L   Y++  GKT EE+E  L 
Sbjct: 122 --IMPTNAMMMIHKPWGVSWGDADDMRDYADLLDKVENVLIPAYMEKTGKTKEELEAMLS 179

Query: 186 RDHIMSASEACDWGVVDKVLM 206
            +  ++A E  + G  + ++ 
Sbjct: 180 EETWLTAEECVEHGFANTIIE 200


>gi|238791540|ref|ZP_04635178.1| ATP-dependent Clp protease proteolytic subunit [Yersinia intermedia
           ATCC 29909]
 gi|238729156|gb|EEQ20672.1| ATP-dependent Clp protease proteolytic subunit [Yersinia intermedia
           ATCC 29909]
          Length = 647

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 55/183 (30%), Positives = 87/183 (47%), Gaps = 13/183 (7%)

Query: 25  QTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG 84
               GE+S DIY  + +E  +   G      A+        L+A      I+L I+SPGG
Sbjct: 1   MKASGEKSADIY--IYEE--IGYWGVTARQFASS-------LKALGDIDHINLRIHSPGG 49

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
            V  G+AIY+ +       + +  G AASM S++   G         NA +++H+P G  
Sbjct: 50  DVFEGIAIYNLLNTHPASKTVYIDGLAASMASVIAMVGNPV--IMPENAMMMIHKPWGIT 107

Query: 145 SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            G A+D+  +A  + K++  L   Y K  GKT EE+   L  +  ++A E  + G  D++
Sbjct: 108 GGDANDMRDYADLLDKVEGVLIPSYAKKTGKTPEELAVMLGEETWLTAQECVEHGFADQL 167

Query: 205 LMS 207
           L S
Sbjct: 168 LPS 170


>gi|262174040|ref|ZP_06041716.1| prophage Clp protease-like protein [Vibrio mimicus MB-451]
 gi|261890220|gb|EEY36208.1| prophage Clp protease-like protein [Vibrio mimicus MB-451]
          Length = 677

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 48/141 (34%), Positives = 74/141 (52%), Gaps = 2/141 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L++    + I L I+SPGG V  GM IY+ +      I+ +  G AASM S++   G+  
Sbjct: 46  LKSRGDVRNIVLRIHSPGGDVFEGMVIYNLLNQHPAYITVYIDGLAASMASVIAMVGD-- 103

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
           +     NA I++H+P G   G A D+ R+A  + +++  L   Y K  GKT EE+++ LD
Sbjct: 104 VVIIPMNAAIMIHKPWGIQGGDADDMRRYADLLDQVEDSLVSAYTKKTGKTVEEIKQLLD 163

Query: 186 RDHIMSASEACDWGVVDKVLM 206
            +  M   EA + G  D V  
Sbjct: 164 AETWMFGQEAVELGFADMVAE 184


>gi|209397642|ref|YP_002271427.1| putative phage portal protein, lambda family [Escherichia coli
           O157:H7 str. EC4115]
 gi|209159042|gb|ACI36475.1| putative phage portal protein, lambda family [Escherichia coli
           O157:H7 str. EC4115]
          Length = 1156

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/139 (33%), Positives = 73/139 (52%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++  AG+  
Sbjct: 536 LNALGDITHINLHINSPGGDVFEGIAIFNALKNQGATITVYVDGVAASMASVIAMAGDTV 595

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 NA +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 596 --IMPENAFMMIHKPWGFSGGDAEDMRSYADLLDKVESVLLPAYAQKTGKTTDEIAAMLA 653

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 654 DETWMSGAECLAHGFADQV 672


>gi|222139910|ref|YP_002519978.1| ATP-dependent Clp protease proteolytic subunit [Ephedra equisetina]
 gi|220983579|dbj|BAH11346.1| ATP-dependent Clp protease proteolytic subunit [Ephedra equisetina]
          Length = 221

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 52/169 (30%), Positives = 95/169 (56%), Gaps = 5/169 (2%)

Query: 41  KERIVFVTGQIEDHMATLICAQLLFLEAENPQK----EISLYINSPGGVVTAGMAIYDTM 96
           + R +F+   +++ + ++    LL+L  ++ +K    +I +YINS GG +  G++I+D M
Sbjct: 3   RTRCIFLGQPVDEDIGSIFVGILLYLFIDDIRKGKSRQIFMYINSCGGAILPGLSIFDIM 62

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS-GQASDIERHA 155
             ++  I T  +G  AS  +L+LSAG  G R   P++RI++HQP      G A    + A
Sbjct: 63  LQLRETIHTIGLGLVASTATLVLSAGTFGFRNTGPHSRIMIHQPRASLRDGPAWLFAKDA 122

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             + ++++ + + Y     +  E +E  LD++  MS  EA D+G+VD+V
Sbjct: 123 FFVQQLRKMIVQCYCLRTPQFEELIENALDKNTYMSPEEAVDFGLVDRV 171


>gi|323484093|ref|ZP_08089463.1| ATP-dependent Clp protease [Clostridium symbiosum WAL-14163]
 gi|323402535|gb|EGA94863.1| ATP-dependent Clp protease [Clostridium symbiosum WAL-14163]
          Length = 236

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 77/174 (44%), Gaps = 4/174 (2%)

Query: 42  ERIVFVTGQIEDHMA--TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           ER + + G+I D       +  +L   E      +++++INSPGG V A   IY+ +   
Sbjct: 16  ERTLVLNGEISDETWFGDEVTPKLFEKELNAGAGDVTVWINSPGGDVFAAAQIYNMLMEY 75

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
           K  ++      AAS  S++  AG        P   +++H P     G + ++++  + + 
Sbjct: 76  KGDVTVKVDALAASAASVIAMAGTSV--LISPVGMMMIHNPMTIAIGDSKEMQKAGEMLD 133

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
           ++K  +   Y    G +   +   +D +   +A +A + G  D +L   ++  E
Sbjct: 134 EVKESIMNAYEIKTGLSRARISHLMDAESWFNAKKAVELGFADGILGGGLEKTE 187


>gi|257088339|ref|ZP_05582700.1| peptidase S14 [Enterococcus faecalis D6]
 gi|256996369|gb|EEU83671.1| peptidase S14 [Enterococcus faecalis D6]
          Length = 250

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 4/165 (2%)

Query: 42  ERIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           +R +++ GQI         +  QL   E  + +  I+++INSPGG   A   IY+ ++  
Sbjct: 24  DRTLYLNGQIAEVSWFDDDVTPQLFKDELMSGEGNITVWINSPGGDCVAAAQIYNMLKEY 83

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
              ++    G AAS  S++  AG+K      P A +++H PS    G   D+++    + 
Sbjct: 84  SGDVTIKIDGLAASAASVIAMAGDKV--VMSPVAMMMIHNPSTVAFGDRVDMQKAMAMLD 141

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           ++K  +   Y    G +  ++   +D +  M A  A D G  D V
Sbjct: 142 EVKESIINAYEIKTGMSRTKLAHMMDAETWMDARSAVDLGFADDV 186


>gi|296102058|ref|YP_003612204.1| ATP-dependent protease [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295056517|gb|ADF61255.1| ATP-dependent protease [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 638

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/150 (31%), Positives = 79/150 (52%), Gaps = 6/150 (4%)

Query: 59  ICAQLL--FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
           I AQ     L+       I+L+I+SPGG V  G+AIY+ +      ++    G AASM S
Sbjct: 29  ITAQQFSEDLKTLGDISHINLHIHSPGGDVFDGIAIYNLLNKHPAKVTVQIDGLAASMAS 88

Query: 117 LLLSAGEKGMRFALP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK 175
           ++  AG+   R  +P NA +++H+P G   G A+D+  +A+ + K++  L   Y +  GK
Sbjct: 89  VIAMAGD---RIVMPENALMMIHKPWGISGGNANDMRDYAELLDKVESVLIPAYARKTGK 145

Query: 176 TYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           + E + + L+ +  M   E    G  D++L
Sbjct: 146 SAESLAEMLEDETWMDGRECVAQGFADELL 175


>gi|153955259|ref|YP_001396024.1| Phage-related protease [Clostridium kluyveri DSM 555]
 gi|219855684|ref|YP_002472806.1| hypothetical protein CKR_2341 [Clostridium kluyveri NBRC 12016]
 gi|146348117|gb|EDK34653.1| Phage-related protease [Clostridium kluyveri DSM 555]
 gi|219569408|dbj|BAH07392.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 229

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 81/173 (46%), Gaps = 4/173 (2%)

Query: 43  RIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           R +++ G I  E      +  ++   E      +I+++INSPGG V A   IY+ +    
Sbjct: 15  RTLYLNGVISEETWWGDEVTPKMFKDELLAGTGDITVWINSPGGDVFAAAQIYNMLMDYT 74

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
             ++    G AAS  S++  AG  G  +  P + I++H PS    G + ++ R    + +
Sbjct: 75  GKVTVKIDGLAASAASVIAMAG--GDVYMSPVSMIMIHNPSTIAIGDSEEMLRAKALLDE 132

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
           +K  +   Y    G +  ++   +D +  M+A++A + G  DK++    +  +
Sbjct: 133 VKESIINAYELKTGLSRIKLSHLMDAESWMNANKAIELGFADKIMFMESETPD 185


>gi|322835204|ref|YP_004215230.1| peptidase S14 ClpP [Rahnella sp. Y9602]
 gi|321170405|gb|ADW76103.1| peptidase S14 ClpP [Rahnella sp. Y9602]
          Length = 676

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 13/181 (7%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
                G+++ DIY  +  E      G      A    + +  L   +    I+L+I+SPG
Sbjct: 24  RMKASGDKTADIY--IYDE-----IGYWGV-TARQFTSSMKALGDLDH---INLHIHSPG 72

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           G V  G+AIY+ +       + +  G AASM S++   G         NA +++H+P G 
Sbjct: 73  GDVFDGIAIYNLLNSHTASKTVYIDGLAASMASVIAMVGNPI--IMPENAMMMIHKPWGI 130

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
             G A+D+  +A  + K++  L   Y K  GKT +E+   L  +  M+A E  + G  D+
Sbjct: 131 TGGDANDMRDYADLLDKVEAVLIPSYAKKTGKTPDELALMLGEETWMTAQECLEHGFADQ 190

Query: 204 V 204
           +
Sbjct: 191 I 191


>gi|293433601|ref|ZP_06662029.1| prophage Clp protease-like protein [Escherichia coli B088]
 gi|291324420|gb|EFE63842.1| prophage Clp protease-like protein [Escherichia coli B088]
          Length = 686

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/139 (33%), Positives = 73/139 (52%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++  AG+  
Sbjct: 66  LNALGDITHINLHINSPGGDVFEGIAIFNALKNQGATITVYVDGVAASMASVIAMAGDTV 125

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 NA +++H+P G   G A D+  +A  + KI+  L   Y +  GKT +E+   L 
Sbjct: 126 --IMPENAFMMIHKPWGFSEGDAEDMRSYADLLDKIESVLLPAYAQKTGKTTDEIAAMLA 183

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 184 DETWMSGAECLAHGFADQV 202


>gi|302386147|ref|YP_003821969.1| peptidase S14 ClpP [Clostridium saccharolyticum WM1]
 gi|302196775|gb|ADL04346.1| peptidase S14 ClpP [Clostridium saccharolyticum WM1]
          Length = 236

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/176 (22%), Positives = 79/176 (44%), Gaps = 4/176 (2%)

Query: 43  RIVFVTGQIEDHMA--TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           R +++ G+I D       +  +L   E  +   +I+++INS GG V A   IY+ +   K
Sbjct: 17  RTLYLDGEISDETWYGDEVTPELFRRELVSGNGDITVWINSSGGDVFAAAQIYNMLMDYK 76

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
             ++      AAS  S++  AG        P A +++H P     G + ++++    + +
Sbjct: 77  GNVTVKVDALAASAASVIAMAGTTVQ--MSPVAMMMIHNPMTVAIGDSEEMKKAGAMLDE 134

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           +K  +   Y    G    +V   +D +   +A +A + G  D++L ++    EK  
Sbjct: 135 VKESIMNAYEIKTGLNRTKVSHLMDAESWFNARKAVELGFADEILENKSGNREKEN 190


>gi|326338736|gb|EGD62556.1| Prophage Clp protease-like protein [Escherichia coli O157:H7 str.
           1125]
          Length = 651

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/139 (33%), Positives = 73/139 (52%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++  AG+  
Sbjct: 31  LNALGDITHINLHINSPGGDVFEGIAIFNALKNQGATITVYVDGVAASMASVIAMAGDTV 90

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 NA +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 91  --IMPENAFMMIHKPWGFSGGDAEDMRSYADLLDKVESVLLPAYAQKTGKTTDEIAAMLA 148

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 149 DETWMSGAECLAHGFADQV 167


>gi|187776052|ref|ZP_02800048.2| peptidase S14, ClpP [Escherichia coli O157:H7 str. EC4196]
 gi|188024966|ref|ZP_02775094.2| peptidase S14, ClpP [Escherichia coli O157:H7 str. EC4113]
 gi|188025119|ref|ZP_02776143.2| peptidase S14, ClpP [Escherichia coli O157:H7 str. EC4113]
 gi|189010681|ref|ZP_02808648.2| peptidase S14, ClpP [Escherichia coli O157:H7 str. EC4076]
 gi|189010697|ref|ZP_02808743.2| peptidase S14, ClpP [Escherichia coli O157:H7 str. EC4076]
 gi|189010786|ref|ZP_02809320.2| peptidase S14, ClpP [Escherichia coli O157:H7 str. EC4076]
 gi|189402280|ref|ZP_02781420.2| peptidase S14, ClpP [Escherichia coli O157:H7 str. EC4401]
 gi|189403387|ref|ZP_02795136.2| peptidase S14, ClpP [Escherichia coli O157:H7 str. EC4486]
 gi|189404338|ref|ZP_02788626.2| peptidase S14, ClpP [Escherichia coli O157:H7 str. EC4501]
 gi|208809546|ref|ZP_03251883.1| Clp protease domain protein [Escherichia coli O157:H7 str. EC4206]
 gi|208810843|ref|ZP_03252676.1| Clp protease domain protein [Escherichia coli O157:H7 str. EC4206]
 gi|208814387|ref|ZP_03255716.1| clp protease domain protein [Escherichia coli O157:H7 str. EC4045]
 gi|208815618|ref|ZP_03256797.1| Clp protease domain protein [Escherichia coli O157:H7 str. EC4045]
 gi|208820967|ref|ZP_03261287.1| Clp protease domain protein [Escherichia coli O157:H7 str. EC4042]
 gi|208821734|ref|ZP_03262054.1| Clp protease domain protein [Escherichia coli O157:H7 str. EC4042]
 gi|209399975|ref|YP_002270289.1| Clp protease domain protein [Escherichia coli O157:H7 str. EC4115]
 gi|209400945|ref|YP_002271488.1| Clp protease domain protein [Escherichia coli O157:H7 str. EC4115]
 gi|217329311|ref|ZP_03445391.1| Clp protease domain protein [Escherichia coli O157:H7 str. TW14588]
 gi|254792824|ref|YP_003077661.1| protease [Escherichia coli O157:H7 str. TW14359]
 gi|291282476|ref|YP_003499294.1| Peptidase S14, ClpP [Escherichia coli O55:H7 str. CB9615]
 gi|187769280|gb|EDU33124.1| peptidase S14, ClpP [Escherichia coli O157:H7 str. EC4196]
 gi|188014762|gb|EDU52884.1| peptidase S14, ClpP [Escherichia coli O157:H7 str. EC4113]
 gi|188015660|gb|EDU53782.1| peptidase S14, ClpP [Escherichia coli O157:H7 str. EC4113]
 gi|188998504|gb|EDU67496.1| peptidase S14, ClpP [Escherichia coli O157:H7 str. EC4076]
 gi|188998975|gb|EDU67961.1| peptidase S14, ClpP [Escherichia coli O157:H7 str. EC4076]
 gi|188999003|gb|EDU67989.1| peptidase S14, ClpP [Escherichia coli O157:H7 str. EC4076]
 gi|189356456|gb|EDU74875.1| peptidase S14, ClpP [Escherichia coli O157:H7 str. EC4401]
 gi|189360987|gb|EDU79406.1| peptidase S14, ClpP [Escherichia coli O157:H7 str. EC4486]
 gi|189366267|gb|EDU84683.1| peptidase S14, ClpP [Escherichia coli O157:H7 str. EC4501]
 gi|208724349|gb|EDZ74057.1| Clp protease domain protein [Escherichia coli O157:H7 str. EC4206]
 gi|208729347|gb|EDZ78948.1| Clp protease domain protein [Escherichia coli O157:H7 str. EC4206]
 gi|208732266|gb|EDZ80954.1| Clp protease domain protein [Escherichia coli O157:H7 str. EC4045]
 gi|208735664|gb|EDZ84351.1| clp protease domain protein [Escherichia coli O157:H7 str. EC4045]
 gi|208741090|gb|EDZ88772.1| Clp protease domain protein [Escherichia coli O157:H7 str. EC4042]
 gi|208741857|gb|EDZ89539.1| Clp protease domain protein [Escherichia coli O157:H7 str. EC4042]
 gi|209161375|gb|ACI38808.1| Clp protease domain protein [Escherichia coli O157:H7 str. EC4115]
 gi|209162345|gb|ACI39778.1| Clp protease domain protein [Escherichia coli O157:H7 str. EC4115]
 gi|217317750|gb|EEC26178.1| Clp protease domain protein [Escherichia coli O157:H7 str. TW14588]
 gi|254592224|gb|ACT71585.1| protease [Escherichia coli O157:H7 str. TW14359]
 gi|290762349|gb|ADD56310.1| Peptidase S14, ClpP [Escherichia coli O55:H7 str. CB9615]
 gi|320192299|gb|EFW66944.1| Prophage Clp protease-like protein [Escherichia coli O157:H7 str.
           EC1212]
 gi|323181151|gb|EFZ66681.1| clp protease family protein [Escherichia coli 1180]
 gi|323181169|gb|EFZ66698.1| clp protease family protein [Escherichia coli 1180]
          Length = 651

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/139 (33%), Positives = 73/139 (52%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++  AG+  
Sbjct: 31  LNALGDITHINLHINSPGGDVFEGIAIFNALKNQGATITVYVDGVAASMASVIAMAGDTV 90

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 NA +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 91  --IMPENAFMMIHKPWGFSGGDAEDMRSYADLLDKVESVLLPAYAQKTGKTTDEIAAMLA 148

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 149 DETWMSGAECLAHGFADQV 167


>gi|320172939|gb|EFW48168.1| ATP-dependent Clp protease proteolytic subunit [Shigella
           dysenteriae CDC 74-1112]
 gi|332098988|gb|EGJ03935.1| clp protease family protein [Shigella dysenteriae 155-74]
          Length = 652

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   
Sbjct: 31  LNALGDITHINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGTPV 90

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N  +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 91  --IMPENTFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLA 148

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 149 DETWMSGAECLAHGFADQV 167


>gi|195937913|ref|ZP_03083295.1| putative protease/scaffold protein [Escherichia coli O157:H7 str.
           EC4024]
 gi|195939168|ref|ZP_03084550.1| putative protease/scaffold protein [Escherichia coli O157:H7 str.
           EC4024]
 gi|260867687|ref|YP_003234089.1| putative protease/scaffold protein [Escherichia coli O111:H- str.
           11128]
 gi|260869329|ref|YP_003235731.1| putative protease/scaffold protein [Escherichia coli O111:H- str.
           11128]
 gi|257764043|dbj|BAI35538.1| putative protease/scaffold protein [Escherichia coli O111:H- str.
           11128]
 gi|257765685|dbj|BAI37180.1| putative protease/scaffold protein [Escherichia coli O111:H- str.
           11128]
 gi|320637096|gb|EFX06943.1| putative protease/scaffold protein [Escherichia coli O157:H7 str.
           G5101]
 gi|320653428|gb|EFX21548.1| putative protease/scaffold protein [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
          Length = 674

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/139 (33%), Positives = 73/139 (52%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++  AG+  
Sbjct: 54  LNALGDITHINLHINSPGGDVFEGIAIFNALKNQGATITVYVDGVAASMASVIAMAGDTV 113

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 NA +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 114 --IMPENAFMMIHKPWGFSGGDAEDMRSYADLLDKVESVLLPAYAQKTGKTTDEIAAMLA 171

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 172 DETWMSGAECLAHGFADQV 190


>gi|218551656|ref|YP_002385448.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           [Escherichia fergusonii ATCC 35469]
 gi|218359198|emb|CAQ91863.2| putative ATP-dependent Clp protease proteolytic subunit
           (Endopeptidase Clp) [Escherichia fergusonii ATCC 35469]
          Length = 739

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   
Sbjct: 118 LNALGDITHINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPV 177

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N  +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 178 --IMPENTFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLA 235

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 236 DETWMSGAECLAHGFADQV 254


>gi|320654209|gb|EFX22272.1| putative protease encoded in prophage CP-933K [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320664709|gb|EFX31852.1| putative protease encoded in prophage CP-933K [Escherichia coli
           O157:H7 str. LSU-61]
          Length = 652

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G+  
Sbjct: 31  LNALGDITHINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGKPV 90

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N+ +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 91  --IMPENSFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLA 148

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 149 DETWMSGAECLAHGFADQV 167


>gi|261254705|ref|ZP_05947238.1| putative protease/scaffold protein [Escherichia coli O157:H7 str.
           FRIK966]
          Length = 674

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/139 (33%), Positives = 73/139 (52%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++  AG+  
Sbjct: 54  LNALGDITHINLHINSPGGDVFEGIAIFNALKNQGATITVYVDGVAASMASVIAMAGDTV 113

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 NA +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 114 --IMPENAFMMIHKPWGFSGGDAEDMRSYADLLDKVESVLLPAYAQKTGKTTDEIAAMLA 171

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 172 DETWMSGAECLAHGFADQV 190


>gi|15800503|ref|NP_286515.1| putative protease encoded in prophage CP-933K [Escherichia coli
           O157:H7 EDL933]
 gi|12513735|gb|AAG55123.1|AE005257_2 putative protease encoded in prophage CP-933K [Escherichia coli
           O157:H7 str. EDL933]
          Length = 675

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L INSPGG V  G+AI++ ++     I+ +  G AASM S++   G+  
Sbjct: 54  LNALGDITHINLNINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGKPV 113

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N+ +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 114 --IMPENSFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLA 171

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 172 DETWMSGAECLAHGFADQV 190


>gi|294490162|gb|ADE88918.1| gifsy-2 prophage Clp protease-like protein [Escherichia coli
           IHE3034]
          Length = 675

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   
Sbjct: 54  LNALGDITHINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPV 113

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N  +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 114 --IMPENTFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLA 171

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 172 DETWMSGAECLAHGFADQV 190


>gi|325499899|gb|EGC97758.1| ATP-dependent protease [Escherichia fergusonii ECD227]
          Length = 652

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 45/139 (32%), Positives = 70/139 (50%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   
Sbjct: 31  LNALGDITHINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPV 90

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N  +++H+P G   G A D+  HA  + K++  L   Y +  GKT +E+   L 
Sbjct: 91  --IMPENTFMMIHKPFGFTGGDAEDMRTHADLLDKVEAVLLPAYAQKTGKTTDEIAAMLA 148

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 149 DETWMSGAECLAHGFADQV 167


>gi|187940099|gb|ACD39231.1| protease domain protein [Pseudomonas aeruginosa]
          Length = 693

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/138 (31%), Positives = 75/138 (54%), Gaps = 2/138 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L+A     +I+L+I+SPGG V  G AIY+ ++     +  +  G AASM S++  AG+  
Sbjct: 63  LKAMGDLTKINLHIHSPGGDVFEGTAIYNLLRNHPASVDVYIDGLAASMASVIAMAGDTI 122

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
             +   NA +++H+P G   G A D+ R+A+ + K++  L   Y    GK+ ++++  L 
Sbjct: 123 --YMPENAMMMVHKPWGIQGGDADDMRRYAELLDKVEDTLVMAYANKTGKSADDIKALLK 180

Query: 186 RDHIMSASEACDWGVVDK 203
            +  M+  EA   G  D+
Sbjct: 181 EETWMNGREAVAAGFADQ 198


>gi|187939802|gb|ACD38942.1| hypothetical protease protein [Pseudomonas aeruginosa]
          Length = 693

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/138 (31%), Positives = 75/138 (54%), Gaps = 2/138 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L+A     +I+L+I+SPGG V  G AIY+ ++     +  +  G AASM S++  AG+  
Sbjct: 63  LKAMGDLTKINLHIHSPGGDVFEGTAIYNLLRNHPASVDVYIDGLAASMASVIAMAGDTI 122

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
             +   NA +++H+P G   G A D+ R+A+ + K++  L   Y    GK+ ++++  L 
Sbjct: 123 --YMPENAMMMVHKPWGIQGGDADDMRRYAELLDKVEDTLVMAYANKTGKSADDIKALLK 180

Query: 186 RDHIMSASEACDWGVVDK 203
            +  M+  EA   G  D+
Sbjct: 181 EETWMNGREAVAAGFADQ 198


>gi|148912770|ref|YP_001293349.1| Putative Clp protease [Pseudomonas phage F10]
          Length = 693

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/138 (31%), Positives = 75/138 (54%), Gaps = 2/138 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L+A     +I+L+I+SPGG V  G AIY+ ++     +  +  G AASM S++  AG+  
Sbjct: 63  LKAMGDLTKINLHIHSPGGDVFEGTAIYNLLRNHPASVDVYIDGLAASMASVIAMAGDTI 122

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
             +   NA +++H+P G   G A D+ R+A+ + K++  L   Y    GK+ ++++  L 
Sbjct: 123 --YMPENAMMMVHKPWGIQGGDADDMRRYAELLDKVEDTLVMAYANKTGKSADDIKALLK 180

Query: 186 RDHIMSASEACDWGVVDK 203
            +  M+  EA   G  D+
Sbjct: 181 EETWMNGREAVAAGFADQ 198


>gi|15832214|ref|NP_310987.1| protease/scaffold protein [Escherichia coli O157:H7 str. Sakai]
 gi|13362429|dbj|BAB36383.1| putative protease/scaffold protein [Escherichia coli O157:H7 str.
           Sakai]
          Length = 368

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/139 (33%), Positives = 73/139 (52%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++  AG+  
Sbjct: 103 LNALGDITHINLHINSPGGDVFEGIAIFNALKNQGATITVYVDGVAASMASVIAMAGDTV 162

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 NA +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 163 --IMPENAFMMIHKPWGFSGGDAEDMRSYADLLDKVESVLLPAYAQKTGKTTDEIAAMLA 220

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 221 DETWMSGAECLAHGFADQV 239


>gi|320195896|gb|EFW70521.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           WV_060327]
          Length = 652

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   
Sbjct: 31  LNALGDITHINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPV 90

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N  +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 91  --IMPENTFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLA 148

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 149 DETWMSGAECLAHGFADQV 167


>gi|301301732|ref|ZP_07207867.1| Clp protease [Escherichia coli MS 124-1]
 gi|300843229|gb|EFK70989.1| Clp protease [Escherichia coli MS 124-1]
          Length = 652

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   
Sbjct: 31  LNALGDITHINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPV 90

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N  +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 91  --IMPENTFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLA 148

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 149 DETWMSGAECLAHGFADQV 167


>gi|218695107|ref|YP_002402774.1| putative ATP-dependent Clp protease proteolytic subunit
           (Endopeptidase Clp) [Escherichia coli 55989]
 gi|218351839|emb|CAU97558.1| putative ATP-dependent Clp protease proteolytic subunit
           (Endopeptidase Clp) [Escherichia coli 55989]
          Length = 739

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   
Sbjct: 118 LNALGDITHINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPV 177

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N  +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 178 --IMPENTFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLA 235

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 236 DETWMSGAECLAHGFADQV 254


>gi|331652921|ref|ZP_08353926.1| putative protease/scaffold protein [Escherichia coli M718]
 gi|331049019|gb|EGI21091.1| putative protease/scaffold protein [Escherichia coli M718]
          Length = 639

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   
Sbjct: 104 LNALGDITHINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPV 163

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N  +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 164 --IMPENTFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLA 221

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 222 DETWMSGAECLAHGFADQV 240


>gi|222033305|emb|CAP76045.1| ATP-dependent Clp protease proteolyticsubunit( end opeptidase Clp)
           [Escherichia coli LF82]
          Length = 707

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   
Sbjct: 86  LNALGDITHINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPV 145

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N  +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 146 --IMPENTFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLA 203

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 204 DETWMSGAECLAHGFADQV 222


>gi|194426733|ref|ZP_03059286.1| ATP-dependent protease [Escherichia coli B171]
 gi|194429906|ref|ZP_03062417.1| ATP-dependent protease [Escherichia coli B171]
 gi|194412062|gb|EDX28373.1| ATP-dependent protease [Escherichia coli B171]
 gi|194415069|gb|EDX31338.1| ATP-dependent protease [Escherichia coli B171]
          Length = 652

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   
Sbjct: 31  LNALGDITHINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPV 90

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N  +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 91  --IMPENTFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLA 148

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 149 DETWMSGAECLAHGFADQV 167


>gi|312946146|gb|ADR26973.1| putative ATP-dependent Clp protease proteolytic subunit
           (Endopeptidase Clp) [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315614576|gb|EFU95219.1| clp protease family protein [Escherichia coli 3431]
          Length = 652

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   
Sbjct: 31  LNALGDITHINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPV 90

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N  +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 91  --IMPENTFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLA 148

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 149 DETWMSGAECLAHGFADQV 167


>gi|218703100|ref|YP_002410729.1| putative ATP-dependent Clp protease proteolytic subunit
           [Escherichia coli IAI39]
 gi|218373086|emb|CAR20978.1| putative ATP-dependent Clp protease proteolytic subunit
           (Endopeptidase Clp) [Escherichia coli IAI39]
          Length = 707

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   
Sbjct: 86  LNALGDITHINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPV 145

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N  +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 146 --IMPENTFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLA 203

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 204 DETWMSGAECLAHGFADQV 222


>gi|323190376|gb|EFZ75652.1| clp protease family protein [Escherichia coli RN587/1]
          Length = 652

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   
Sbjct: 31  LNALGDITHINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPV 90

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N  +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 91  --IMPENTFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLA 148

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 149 DETWMSGAECLAHGFADQV 167


>gi|91214065|ref|YP_544051.1| putative protease/scaffold protein [Escherichia coli UTI89]
 gi|91075639|gb|ABE10520.1| putative protease/scaffold protein [Escherichia coli UTI89]
          Length = 707

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   
Sbjct: 86  LNALGDITHINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPV 145

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N  +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 146 --IMPENTFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLA 203

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 204 DETWMSGAECLAHGFADQV 222


>gi|15830083|ref|NP_308856.1| protease/scaffold protein [Escherichia coli O157:H7 str. Sakai]
 gi|13360288|dbj|BAB34252.1| putative protease/scaffold protein [Escherichia coli O157:H7 str.
           Sakai]
          Length = 707

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L INSPGG V  G+AI++ ++     I+ +  G AASM S++   G+  
Sbjct: 86  LNALGDITHINLNINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGKPV 145

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N+ +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 146 --IMPENSFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLA 203

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 204 DETWMSGAECLAHGFADQV 222


>gi|304560655|gb|ADM43318.1| putative Clp protease [Edwardsiella tarda FL6-60]
          Length = 671

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 42/140 (30%), Positives = 74/140 (52%), Gaps = 2/140 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+I+SPGG V  G+AIY+ ++      + +  G AASM S++   G+  
Sbjct: 50  LTALGQVNHINLHIHSPGGDVFDGIAIYNLLKNHPASKTVYIDGLAASMASVIAMVGDPI 109

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 NA +++H+P G   G A+++  +A  + K++  L   Y +  GKT +E+   L+
Sbjct: 110 --IMPENAMMMIHKPWGVAGGDANEMRDYADLLDKVESVLIPAYAEKTGKTADEIAALLE 167

Query: 186 RDHIMSASEACDWGVVDKVL 205
           ++  +S  E  + G  DK +
Sbjct: 168 QETWLSGVECVEQGFADKTI 187


>gi|324112021|gb|EGC05999.1| Clp protease [Escherichia fergusonii B253]
          Length = 652

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   
Sbjct: 31  LNALGDITHINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPV 90

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N  +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 91  --IMPENTFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLA 148

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 149 DETWMSGAECLAHGFADQV 167


>gi|320193194|gb|EFW67834.1| putative protease/scaffold protein [Escherichia coli O157:H7 str.
           EC1212]
          Length = 652

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L INSPGG V  G+AI++ ++     I+ +  G AASM S++   G+  
Sbjct: 31  LNALGDITHINLNINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGKPV 90

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N+ +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 91  --IMPENSFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLA 148

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 149 DETWMSGAECLAHGFADQV 167


>gi|168750296|ref|ZP_02775318.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC4113]
 gi|168763393|ref|ZP_02788400.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC4501]
 gi|168767249|ref|ZP_02792256.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC4486]
 gi|168776451|ref|ZP_02801458.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC4196]
 gi|168779292|ref|ZP_02804299.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC4076]
 gi|168800764|ref|ZP_02825771.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC508]
 gi|195936790|ref|ZP_03082172.1| putative protease/scaffold protein [Escherichia coli O157:H7 str.
           EC4024]
 gi|208807803|ref|ZP_03250140.1| Clp protease domain protein [Escherichia coli O157:H7 str. EC4206]
 gi|208816401|ref|ZP_03257580.1| Clp protease domain protein [Escherichia coli O157:H7 str. EC4045]
 gi|208822227|ref|ZP_03262546.1| Clp protease domain protein [Escherichia coli O157:H7 str. EC4042]
 gi|209397527|ref|YP_002269422.1| Clp protease domain protein [Escherichia coli O157:H7 str. EC4115]
 gi|217326328|ref|ZP_03442412.1| Clp protease domain protein [Escherichia coli O157:H7 str. TW14588]
 gi|254791946|ref|YP_003076783.1| putative protease encoded in prophage CP-933K [Escherichia coli
           O157:H7 str. TW14359]
 gi|187768186|gb|EDU32030.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC4196]
 gi|188015533|gb|EDU53655.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC4113]
 gi|189003055|gb|EDU72041.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC4076]
 gi|189363580|gb|EDU81999.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC4486]
 gi|189366473|gb|EDU84889.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC4501]
 gi|189376949|gb|EDU95365.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC508]
 gi|208727604|gb|EDZ77205.1| Clp protease domain protein [Escherichia coli O157:H7 str. EC4206]
 gi|208733049|gb|EDZ81737.1| Clp protease domain protein [Escherichia coli O157:H7 str. EC4045]
 gi|208737712|gb|EDZ85395.1| Clp protease domain protein [Escherichia coli O157:H7 str. EC4042]
 gi|209158927|gb|ACI36360.1| Clp protease domain protein [Escherichia coli O157:H7 str. EC4115]
 gi|217322549|gb|EEC30973.1| Clp protease domain protein [Escherichia coli O157:H7 str. TW14588]
 gi|254591346|gb|ACT70707.1| putative protease encoded in prophage CP-933K [Escherichia coli
           O157:H7 str. TW14359]
 gi|326347959|gb|EGD71672.1| ATP-dependent Clp protease proteolytic subunit [Escherichia coli
           O157:H7 str. 1044]
          Length = 652

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L INSPGG V  G+AI++ ++     I+ +  G AASM S++   G+  
Sbjct: 31  LNALGDITHINLNINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGKPV 90

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N+ +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 91  --IMPENSFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLA 148

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 149 DETWMSGAECLAHGFADQV 167


>gi|168786963|ref|ZP_02811970.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC869]
 gi|261225398|ref|ZP_05939679.1| putative protease encoded in prophage CP-933K [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261258634|ref|ZP_05951167.1| putative protease encoded in prophage CP-933K [Escherichia coli
           O157:H7 str. FRIK966]
 gi|189373191|gb|EDU91607.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC869]
          Length = 652

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L INSPGG V  G+AI++ ++     I+ +  G AASM S++   G+  
Sbjct: 31  LNALGDITHINLNINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGKPV 90

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N+ +++H+P G   G A D+  +A  + K++  L  +Y +  GKT +E+   L 
Sbjct: 91  --IMPENSFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPVYAQKTGKTTDEIAAMLA 148

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 149 DETWMSGAECLAHGFADQV 167


>gi|191173169|ref|ZP_03034701.1| ATP-dependent protease [Escherichia coli F11]
 gi|300992761|ref|ZP_07180038.1| Clp protease [Escherichia coli MS 200-1]
 gi|190906554|gb|EDV66161.1| ATP-dependent protease [Escherichia coli F11]
 gi|300305257|gb|EFJ59777.1| Clp protease [Escherichia coli MS 200-1]
 gi|324010861|gb|EGB80080.1| Clp protease [Escherichia coli MS 60-1]
          Length = 652

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   
Sbjct: 31  LNALGDITHINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPV 90

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N  +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 91  --IMPENTFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLA 148

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 149 DETWMSGAECLAHGFADQV 167


>gi|168757092|ref|ZP_02782099.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC4401]
 gi|189355896|gb|EDU74315.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC4401]
          Length = 652

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L INSPGG V  G+AI++ ++     I+ +  G AASM S++   G+  
Sbjct: 31  LNALGDITHINLNINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGKPV 90

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N+ +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 91  --IMPENSFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLA 148

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 149 DETWMSGAECLAHGFADQV 167


>gi|326345681|gb|EGD69420.1| putative protease/scaffold protein [Escherichia coli O157:H7 str.
           1125]
          Length = 652

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L INSPGG V  G+AI++ ++     I+ +  G AASM S++   G+  
Sbjct: 31  LNALGDITHINLNINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGKPV 90

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N+ +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 91  --IMPENSFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLA 148

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 149 DETWMSGAECLAHGFADQV 167


>gi|323161352|gb|EFZ47259.1| clp protease family protein [Escherichia coli E128010]
          Length = 652

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   
Sbjct: 31  LNALGDITHINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPV 90

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N  +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 91  --IMPENTFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLA 148

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 149 DETWMSGAECLAHGFADQV 167


>gi|324117952|gb|EGC11851.1| Clp protease [Escherichia coli E1167]
          Length = 652

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   
Sbjct: 31  LNALGDITHINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPV 90

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N  +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 91  --IMPENTFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLA 148

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 149 DETWMSGAECLAHGFADQV 167


>gi|303274128|ref|XP_003056387.1| ATP-dependent clp protease [Micromonas pusilla CCMP1545]
 gi|226462471|gb|EEH59763.1| ATP-dependent clp protease [Micromonas pusilla CCMP1545]
          Length = 294

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 48/180 (26%), Positives = 87/180 (48%), Gaps = 15/180 (8%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI-YDTMQFIKP 101
           RIV++   +   +  LI ++LL+++  +  +   +YINS G     G  + Y      K 
Sbjct: 87  RIVYIGMPLVPAVTELIVSELLYMQYTDATRPCYIYINSTGCQRADGEVLPYSDNANNKV 146

Query: 102 P------------ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQ-- 147
           P            I T   G A     ++LSAG KG RF   +A  +LHQP    +GQ  
Sbjct: 147 PHLRFAENFPLQQIYTVGTGVAIGQACMILSAGNKGKRFMTAHATAMLHQPRIPSTGQRQ 206

Query: 148 ASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           A ++    +++++ K+ + +I     G + E+++  + R   ++A +A  +G+VDKV+  
Sbjct: 207 AIELHLKWKEVLEQKKAMVDILSLTTGHSKEKIDNDIQRPLYLTAKDAIAYGIVDKVVDK 266


>gi|320179471|gb|EFW54427.1| Prophage Clp protease-like protein [Shigella boydii ATCC 9905]
          Length = 663

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 45/139 (32%), Positives = 70/139 (50%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   
Sbjct: 31  LNALGDITHINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGTPV 90

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N  +++H+P G   G A D+  +A  + K++  L   Y +  GKT +EV   L 
Sbjct: 91  --IMPENTFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEVAAMLA 148

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 149 DETWMSGAECLAHGFADQV 167


>gi|327252451|gb|EGE64110.1| clp protease family protein [Escherichia coli STEC_7v]
          Length = 629

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 11/171 (6%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           +Y R+  E    + G      A         + A     EI L I+SPGG +  G+AIY+
Sbjct: 14  VYVRIYDE----IGGYGVKASALTD-----EINACGNASEIHLRIHSPGGDIFEGLAIYN 64

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            ++           G AASM S +   G+        NA +++H P G  +G + D+ R 
Sbjct: 65  ALKNHPAKKIVHIEGMAASMASFIAMCGDHI--VMPENAMMMIHAPRGVTAGVSGDVRRF 122

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           A  + K+   + E Y    G++ +E+   ++ +  M  +E    G  D+V+
Sbjct: 123 ADLMDKLGDTMAETYAGRTGRSKQEITAMMEAETWMDGNECKANGFADEVI 173


>gi|125974224|ref|YP_001038134.1| peptidase S14, ClpP [Clostridium thermocellum ATCC 27405]
 gi|125714449|gb|ABN52941.1| peptidase S14, ClpP [Clostridium thermocellum ATCC 27405]
          Length = 247

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 42/141 (29%), Positives = 70/141 (49%), Gaps = 2/141 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K+I+++INS GG V A   IY  ++  K  +     G A S  S++  AG++      P 
Sbjct: 55  KDINVWINSYGGDVYAASRIYTGLKEHKGKVKVKIDGVAISAASVIAMAGDEI--LMSPT 112

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           + I+LH P G F G+A D+   A  + ++K  +   Y    GK+  ++ + +D +  MSA
Sbjct: 113 SIIMLHNPWGTFQGEAKDLRHGADVLDEVKETIINAYQLKTGKSRAKISQMMDEETWMSA 172

Query: 193 SEACDWGVVDKVLMSRIDIEE 213
            +A   G  D +L  +   E 
Sbjct: 173 KKAVAEGFADGMLYEKNKEEP 193


>gi|301300713|ref|ZP_07206898.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300851651|gb|EFK79350.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 234

 Score =  134 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 47/148 (31%), Positives = 82/148 (55%), Gaps = 4/148 (2%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L+     K I+L+INSPGG V  G+AI++ ++  K  I+ +  G AAS+ S++  +G+  
Sbjct: 36  LDDLGDVKTINLHINSPGGSVFEGIAIHNMLKMHKAKINVYVDGLAASIASVIAMSGDTI 95

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC-GK-TYEEVEKT 183
             F   N+ +++H P     G + ++ + A D+ +I +   + Y+    GK   E + K 
Sbjct: 96  --FMPENSMLMIHNPWTVAMGNSKELRKQADDLDRIAQMSVKTYLSKSNGKIDEETLVKL 153

Query: 184 LDRDHIMSASEACDWGVVDKVLMSRIDI 211
           LD +  +SA EA D+G+ D+VL S   +
Sbjct: 154 LDEETWLSAQEAVDYGLADEVLESNKAV 181


>gi|218890093|ref|YP_002438957.1| Putative Clp protease [Pseudomonas aeruginosa LESB58]
 gi|218770316|emb|CAW26081.1| Putative Clp protease [Pseudomonas aeruginosa LESB58]
          Length = 693

 Score =  134 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 44/138 (31%), Positives = 75/138 (54%), Gaps = 2/138 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L+A     +ISL+I+SPGG V  G AIY+ ++     +  +  G AASM S++  AG+  
Sbjct: 63  LKAMGDLNKISLHIHSPGGDVFEGTAIYNLLRNHPASVDVYIDGLAASMASVIAMAGDTI 122

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
             +   NA +++H+P G   G A D+ R+A+ + K++  L   Y    GK+ ++++  L 
Sbjct: 123 --YMPENAMMMVHKPWGIQGGDADDMRRYAELLDKVEDTLVMAYANKTGKSADDIKALLK 180

Query: 186 RDHIMSASEACDWGVVDK 203
            +  M+  EA   G  D+
Sbjct: 181 EETWMNGREAVAAGFADQ 198


>gi|11875099|dbj|BAB19578.1| scaffolding protein [Enterobacteria phage VT1-Sakai]
 gi|326343885|gb|EGD67646.1| Prophage Clp protease-like protein [Escherichia coli O157:H7 str.
           1044]
          Length = 296

 Score =  134 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 46/139 (33%), Positives = 73/139 (52%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++  AG+  
Sbjct: 31  LNALGDITHINLHINSPGGDVFEGIAIFNALKNQGATITVYVDGVAASMASVIAMAGDTV 90

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 NA +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 91  --IMPENAFMMIHKPWGFSGGDAEDMRSYADLLDKVESVLLPAYAQKTGKTTDEIAAMLA 148

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 149 DETWMSGAECLAHGFADQV 167


>gi|170755513|ref|YP_001782120.1| putative Clp protease [Clostridium botulinum B1 str. Okra]
 gi|169120725|gb|ACA44561.1| putative Clp protease [Clostridium botulinum B1 str. Okra]
          Length = 252

 Score =  134 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 43/145 (29%), Positives = 80/145 (55%), Gaps = 4/145 (2%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L++      +++YINSPGG V  G AIY+ ++  K  I+    G AAS+ S++  AG+  
Sbjct: 46  LDSLGDIDTLNIYINSPGGSVFQGTAIYNIIKRHKAKINIHVDGVAASIASVIAMAGDTI 105

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCG--KTYEEVEKT 183
             F   N+ +++H P     G A+++ + A D+ KI+  L E Y+   G   + E + + 
Sbjct: 106 --FMPKNSMMMIHNPWTFAWGNANELRKQADDLDKIRESLIEAYLSKAGDKLSRETLIEI 163

Query: 184 LDRDHIMSASEACDWGVVDKVLMSR 208
           +D +  ++A E  D+G+ D+++  +
Sbjct: 164 MDNETWLTAQECYDYGLCDELVEEK 188


>gi|300214522|gb|ADJ78938.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           salivarius CECT 5713]
          Length = 234

 Score =  134 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 47/148 (31%), Positives = 82/148 (55%), Gaps = 4/148 (2%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L+     K I+L+INSPGG V  G+AI++ ++  K  I+ +  G AAS+ S++  +G+  
Sbjct: 36  LDDLGDVKTINLHINSPGGSVFEGIAIHNMLKMNKAKINVYVDGLAASIASVIAMSGDTI 95

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC-GK-TYEEVEKT 183
             F   N+ +++H P     G + ++ + A D+ +I +   + Y+    GK   E + K 
Sbjct: 96  --FMPENSMLMIHNPWTVAMGNSKELRKQADDLDRIAQASVKTYLSKSNGKIDEETLVKL 153

Query: 184 LDRDHIMSASEACDWGVVDKVLMSRIDI 211
           LD +  +SA EA D+G+ D+VL S   +
Sbjct: 154 LDEETWLSAQEAVDYGLADEVLESNKAV 181


>gi|194433919|ref|ZP_03066191.1| ATP-dependent protease [Shigella dysenteriae 1012]
 gi|194417791|gb|EDX33888.1| ATP-dependent protease [Shigella dysenteriae 1012]
 gi|332094969|gb|EGJ00009.1| clp protease family protein [Shigella dysenteriae 155-74]
          Length = 663

 Score =  134 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 45/139 (32%), Positives = 70/139 (50%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   
Sbjct: 31  LNALGDITHINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPV 90

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N  +++H+P G   G A D+  +A  + K++  L   Y +  GKT +EV   L 
Sbjct: 91  --IMPENTFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEVAAMLA 148

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 149 DETWMSGAECLAHGFADQV 167


>gi|15802431|ref|NP_288457.1| putative peptidase encoded within prophage CP-933U [Escherichia
           coli O157:H7 EDL933]
 gi|12516112|gb|AAG57011.1|AE005420_16 putative peptidase encoded within prophage CP-933U [Escherichia
           coli O157:H7 str. EDL933]
          Length = 319

 Score =  134 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 46/139 (33%), Positives = 73/139 (52%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++  AG+  
Sbjct: 54  LNALGDITHINLHINSPGGDVFEGIAIFNALKNQGATITVYVDGVAASMASVIAMAGDTV 113

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 NA +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 114 --IMPENAFMMIHKPWGFSGGDAEDMRSYADLLDKVESVLLPAYAQKTGKTTDEIAAMLA 171

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 172 DETWMSGAECLAHGFADQV 190


>gi|77414900|ref|ZP_00791005.1| Clp protease [Streptococcus agalactiae 515]
 gi|77159045|gb|EAO70251.1| Clp protease [Streptococcus agalactiae 515]
          Length = 106

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 64/103 (62%), Positives = 86/103 (83%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TGQ+ED+MA  I AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGQVEDNMANSIIAQLLFLDAQDNTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           Y+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTIIAS 103


>gi|194467896|ref|ZP_03073882.1| peptidase S14 ClpP [Lactobacillus reuteri 100-23]
 gi|194452749|gb|EDX41647.1| peptidase S14 ClpP [Lactobacillus reuteri 100-23]
          Length = 258

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 83/153 (54%), Gaps = 4/153 (2%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L++    K I+L+INSPGG V  G+AIY+ ++     I+ +  G AAS+ S++  +G+  
Sbjct: 48  LKSLGDVKNINLHINSPGGSVFEGIAIYNMLKQNSAHINVYIDGLAASIASVIAMSGDAI 107

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE--VEKT 183
             F   N+ +++H P     G A+++ + A  + +I +   + Y+   G   +E  + + 
Sbjct: 108 --FMPSNSMMMVHNPWVMAIGNANELRKQADALDQITKSSVQTYLAKAGDKLDEKTLTQL 165

Query: 184 LDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           +D +  ++A EA D+G+ D+V+     +   +K
Sbjct: 166 MDDETWLTAQEAVDYGLADEVMEPNKAVASINK 198


>gi|218561583|ref|YP_002394496.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           [Escherichia coli S88]
 gi|218368352|emb|CAR06171.2| putative ATP-dependent Clp protease proteolytic subunit
           (Endopeptidase Clp) [Escherichia coli S88]
          Length = 739

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   
Sbjct: 118 LNALGDITHINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPV 177

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N+ +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 178 --IMPENSFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLA 235

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 236 DETWMSGAECLAQGFADQV 254


>gi|246880736|gb|ACS95048.1| ATP-dependent Clp protease proteolytic subunit [Dunaliella salina]
          Length = 527

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 48/141 (34%), Positives = 80/141 (56%)

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           E   K++ + INS GG V  G+ ++D +QFIK    T  +G AAS  SL+L+ G  G R+
Sbjct: 348 EEESKKVFVIINSFGGSVGNGITVHDALQFIKAGSLTLGLGVAASASSLVLAGGTIGERY 407

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
                  ++HQP     GQASDI   +Q+I+KI+  + +IY  +  +   ++ + LDRD 
Sbjct: 408 VTEGCHTMIHQPESSLQGQASDIWIDSQEIMKIRLDVADIYSLSTYRPRHKILRDLDRDF 467

Query: 189 IMSASEACDWGVVDKVLMSRI 209
            ++A E   +G+ D++  + +
Sbjct: 468 YLNAPETISYGLADEIATNEV 488



 Score = 39.1 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 6/60 (10%)

Query: 19 VPMVVEQTNRGER----SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
          VP ++   + GE       DIY+ + + R+VF+   ++D +   IC  L+ +  E+  KE
Sbjct: 5  VPRIIY--SWGEELPAQWTDIYNFIFRRRMVFLMQYLDDELCNQICGLLINIHMEDRSKE 62


>gi|315293048|gb|EFU52400.1| Clp protease [Escherichia coli MS 153-1]
          Length = 653

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   
Sbjct: 31  LNALGDITHINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPV 90

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N  +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 91  --IMPENTFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLV 148

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 149 DETWMSGAECLAHGFADQV 167


>gi|324021013|gb|EGB90232.1| Clp protease [Escherichia coli MS 117-3]
          Length = 652

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   
Sbjct: 31  LNALGDITHINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPV 90

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N  +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 91  --IMPENTFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLV 148

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 149 DETWMSGAECLAHGFADQV 167


>gi|315252129|gb|EFU32097.1| Clp protease [Escherichia coli MS 85-1]
          Length = 240

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   
Sbjct: 36  LNALGDITHINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPV 95

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N+ +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 96  --IMPENSFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLA 153

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 154 DETWMSGAECLAHGFADQV 172


>gi|260855281|ref|YP_003229172.1| putative protease/scaffold protein [Escherichia coli O26:H11 str.
           11368]
 gi|257753930|dbj|BAI25432.1| putative protease/scaffold protein [Escherichia coli O26:H11 str.
           11368]
          Length = 675

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   
Sbjct: 54  LNALGDITHINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPV 113

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N+ +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 114 --IMPENSFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLA 171

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 172 DETWMSGAECLAQGFADQV 190


>gi|260843585|ref|YP_003221363.1| putative protease/scaffold protein [Escherichia coli O103:H2 str.
           12009]
 gi|257758732|dbj|BAI30229.1| putative protease/scaffold protein [Escherichia coli O103:H2 str.
           12009]
 gi|320642456|gb|EFX11729.1| putative protease/scaffold protein [Escherichia coli O157:H- str.
           493-89]
 gi|320659090|gb|EFX26697.1| putative protease/scaffold protein [Escherichia coli O55:H7 str.
           USDA 5905]
          Length = 674

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 7/162 (4%)

Query: 45  VFVTGQIEDH--MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           +++  +I      A    + +  L        I+L+INSPGG V  G+AI++ ++     
Sbjct: 34  IYIYDEIGFWGVTAKQFVSDMNAL---GDITHINLHINSPGGDVFEGIAIFNALKNQGAT 90

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIK 162
           I+ +  G AASM S++  AG+        NA +++H+P G   G A D+  +A  + K++
Sbjct: 91  ITVYVDGVAASMASVIAMAGDTV--IMPENAFMMIHKPWGFSGGDAEDMRSYADLLDKVE 148

Query: 163 RRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             L   Y +  GKT +E+   L  +  MS +E    G  D+V
Sbjct: 149 SVLLPAYAQKTGKTTDEIAAMLADETWMSGAECLAHGFADQV 190


>gi|218705045|ref|YP_002412564.1| putative ATP-dependent Clp protease proteolytic subunit
           (Endopeptidase Clp) [Escherichia coli UMN026]
 gi|218432142|emb|CAR13030.1| putative ATP-dependent Clp protease proteolytic subunit
           (Endopeptidase Clp) [Escherichia coli UMN026]
          Length = 706

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   
Sbjct: 85  LNALGDITHINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPV 144

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N+ +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 145 --IMPENSFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLA 202

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 203 DETWMSGAECLAQGFADQV 221


>gi|215486155|ref|YP_002328586.1| predicted protease/scaffold protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|215264227|emb|CAS08571.1| predicted protease/scaffold protein [Escherichia coli O127:H6 str.
           E2348/69]
          Length = 696

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   
Sbjct: 75  LNALGDITHINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPV 134

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N  +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 135 --IMPENTFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLA 192

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 193 DETWMSGAECLAQGFADQV 211


>gi|293418507|ref|ZP_06660942.1| conserved hypothetical protein [Escherichia coli B088]
 gi|291325035|gb|EFE64450.1| conserved hypothetical protein [Escherichia coli B088]
          Length = 99

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 73/101 (72%), Positives = 90/101 (89%), Gaps = 2/101 (1%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MS+ G  ++D+    + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI 
Sbjct: 1   MSYSG--ERDNFAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIV 58

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP 101
           AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIKP
Sbjct: 59  AQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKP 99


>gi|189405378|ref|ZP_02815041.2| peptidase S14, ClpP [Escherichia coli O157:H7 str. EC869]
 gi|189406139|ref|ZP_02826588.2| peptidase S14, ClpP [Escherichia coli O157:H7 str. EC508]
 gi|193066454|ref|ZP_03047500.1| peptidase S14, ClpP [Escherichia coli E22]
 gi|189370416|gb|EDU88832.1| peptidase S14, ClpP [Escherichia coli O157:H7 str. EC869]
 gi|189376270|gb|EDU94686.1| peptidase S14, ClpP [Escherichia coli O157:H7 str. EC508]
 gi|192925925|gb|EDV80573.1| peptidase S14, ClpP [Escherichia coli E22]
          Length = 651

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 7/162 (4%)

Query: 45  VFVTGQIEDH--MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           +++  +I      A    + +  L        I+L+INSPGG V  G+AI++ ++     
Sbjct: 11  IYIYDEIGFWGVTAKQFVSDMNAL---GDITHINLHINSPGGDVFEGIAIFNALKNQGAT 67

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIK 162
           I+ +  G AASM S++  AG+        NA +++H+P G   G A D+  +A  + K++
Sbjct: 68  ITVYVDGVAASMASVIAMAGDTV--IMPENAFMMIHKPWGFSGGDAEDMRSYADLLDKVE 125

Query: 163 RRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             L   Y +  GKT +E+   L  +  MS +E    G  D+V
Sbjct: 126 SVLLPAYAQKTGKTTDEIAAMLADETWMSGAECLAHGFADQV 167


>gi|168769871|ref|ZP_02794878.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC4486]
 gi|195937919|ref|ZP_03083301.1| putative protease/scaffold protein [Escherichia coli O157:H7 str.
           EC4024]
 gi|189361107|gb|EDU79526.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC4486]
          Length = 629

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 2/133 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
            EI L I+SPGG +  G+AIY+ ++           G AASM S +   G+        N
Sbjct: 43  SEIHLRIHSPGGDIFEGLAIYNALKNHPAKKIVHIEGMAASMASFIAMCGDHI--VMPEN 100

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A +++H P G  +G + D+ R A  + K+   + E Y    G++ +E+   ++ +  M  
Sbjct: 101 AMMMIHAPRGVTAGVSGDVRRFADLMDKLGDTMAETYAGRTGRSKQEITAMMEAETWMDG 160

Query: 193 SEACDWGVVDKVL 205
           +E    G  D+V+
Sbjct: 161 NECKANGFADEVI 173


>gi|168756419|ref|ZP_02781426.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC4401]
 gi|168770135|ref|ZP_02795142.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC4486]
 gi|189356545|gb|EDU74964.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC4401]
 gi|189361013|gb|EDU79432.1| ATP-dependent protease [Escherichia coli O157:H7 str. EC4486]
          Length = 629

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 2/133 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
            EI L I+SPGG +  G+AIY+ ++           G AASM S +   G+        N
Sbjct: 43  SEIHLRIHSPGGDIFEGLAIYNALKNHPAKKIVHIEGMAASMASFIAMCGDHI--VMPEN 100

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A +++H P G  +G + D+ R A  + K+   + E Y    G++ +E+   ++ +  M  
Sbjct: 101 AMMMIHAPRGVTAGVSGDVRRFADLMDKLGDTMAETYAGRTGRSKQEITAMMEAETWMDG 160

Query: 193 SEACDWGVVDKVL 205
           +E    G  D+V+
Sbjct: 161 NECKANGFADEVI 173


>gi|90961762|ref|YP_535678.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus phage
           Sal1]
 gi|90820956|gb|ABD99595.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus phage
           Sal1]
          Length = 249

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/148 (31%), Positives = 82/148 (55%), Gaps = 4/148 (2%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L+     K I+L+INSPGG V  G+AI++ ++  K  I+ +  G AAS+ S++  +G+  
Sbjct: 51  LDDLGDVKTINLHINSPGGSVFEGIAIHNMLKMNKAKINVYVDGLAASIASVIAMSGDTI 110

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC-GK-TYEEVEKT 183
             F   N+ +++H P     G + ++ + A D+ +I +   + Y+    GK   E + K 
Sbjct: 111 --FMPENSMLMIHNPWTVAMGNSKELRKQADDLDRIAQASVKTYLSKSNGKIDEETLVKL 168

Query: 184 LDRDHIMSASEACDWGVVDKVLMSRIDI 211
           LD +  +SA EA D+G+ D+VL S   +
Sbjct: 169 LDEETWLSAQEAVDYGLADEVLESNKAV 196


>gi|326338731|gb|EGD62551.1| Prophage Clp protease-like protein [Escherichia coli O157:H7 str.
           1125]
          Length = 629

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 2/133 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
            EI L I+SPGG +  G+AIY+ ++           G AASM S +   G+        N
Sbjct: 43  SEIHLRIHSPGGDIFEGLAIYNALKNHPAKKIVHIEGMAASMASFIAMCGDHI--VMPEN 100

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A +++H P G  +G + D+ R A  + K+   + E Y    G++ +E+   ++ +  M  
Sbjct: 101 AMMMIHAPRGVTAGVSGDVRRFADLMDKLGDTMAETYAGRTGRSKQEITAMMEAETWMDG 160

Query: 193 SEACDWGVVDKVL 205
           +E    G  D+V+
Sbjct: 161 NECKANGFADEVI 173


>gi|312967383|ref|ZP_07781598.1| clp protease family protein [Escherichia coli 2362-75]
 gi|312287580|gb|EFR15485.1| clp protease family protein [Escherichia coli 2362-75]
          Length = 652

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   
Sbjct: 31  LNALGDITHINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPV 90

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N  +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 91  --IMPENTFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLA 148

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 149 DETWMSGAECLAQGFADQV 167


>gi|320643291|gb|EFX12482.1| putative protease/scaffold protein [Escherichia coli O157:H- str.
           493-89]
 gi|320648633|gb|EFX17277.1| putative protease/scaffold protein [Escherichia coli O157:H- str. H
           2687]
 gi|323156726|gb|EFZ42864.1| clp protease family protein [Escherichia coli EPECa14]
          Length = 652

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   
Sbjct: 31  LNALGDITHINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPV 90

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N+ +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 91  --IMPENSFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLA 148

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 149 DETWMSGAECLAQGFADQV 167


>gi|117626713|ref|YP_860036.1| putative protease/scaffold protein [Escherichia coli APEC O1]
 gi|331680516|ref|ZP_08381175.1| putative protease/scaffold protein [Escherichia coli H591]
 gi|115515837|gb|ABJ03912.1| putative protease/scaffold protein [Escherichia coli APEC O1]
 gi|331071979|gb|EGI43315.1| putative protease/scaffold protein [Escherichia coli H591]
          Length = 725

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   
Sbjct: 104 LNALGDITHINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPV 163

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N+ +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 164 --IMPENSFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLA 221

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 222 DETWMSGAECLAQGFADQV 240


>gi|312971303|ref|ZP_07785481.1| clp protease family protein [Escherichia coli 1827-70]
 gi|310336505|gb|EFQ01691.1| clp protease family protein [Escherichia coli 1827-70]
          Length = 652

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   
Sbjct: 31  LNALGDITHINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPV 90

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N  +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 91  --IMPENTFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAVMLA 148

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 149 DETWMSGAECLAHGFADQV 167


>gi|191169469|ref|ZP_03031204.1| ATP-dependent protease [Escherichia coli B7A]
 gi|293405047|ref|ZP_06649039.1| prophage Clp protease-like protein [Escherichia coli FVEC1412]
 gi|298380692|ref|ZP_06990291.1| prophage Clp protease-like protein [Escherichia coli FVEC1302]
 gi|300899649|ref|ZP_07117880.1| Clp protease [Escherichia coli MS 198-1]
 gi|331673132|ref|ZP_08373900.1| putative protease/scaffold protein [Escherichia coli TA280]
 gi|190900495|gb|EDV60309.1| ATP-dependent protease [Escherichia coli B7A]
 gi|291427255|gb|EFF00282.1| prophage Clp protease-like protein [Escherichia coli FVEC1412]
 gi|298278134|gb|EFI19648.1| prophage Clp protease-like protein [Escherichia coli FVEC1302]
 gi|300356774|gb|EFJ72644.1| Clp protease [Escherichia coli MS 198-1]
 gi|331069330|gb|EGI40717.1| putative protease/scaffold protein [Escherichia coli TA280]
          Length = 652

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   
Sbjct: 31  LNALGDITHINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPV 90

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N+ +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 91  --IMPENSFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLA 148

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 149 DETWMSGAECLAQGFADQV 167


>gi|301025101|ref|ZP_07188695.1| Clp protease [Escherichia coli MS 69-1]
 gi|300396210|gb|EFJ79748.1| Clp protease [Escherichia coli MS 69-1]
          Length = 652

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   
Sbjct: 31  LNALGDITHINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPV 90

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N+ +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 91  --IMPENSFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLA 148

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 149 DETWMSGAECLAQGFADQV 167


>gi|193066999|ref|ZP_03047968.1| ATP-dependent protease [Escherichia coli E110019]
 gi|192959589|gb|EDV90023.1| ATP-dependent protease [Escherichia coli E110019]
          Length = 652

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   
Sbjct: 31  LNALGDITHINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPV 90

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N  +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 91  --IMPENTFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLA 148

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 149 DETWMSGAECLAQGFADQV 167


>gi|148609387|ref|YP_001272518.1| putative protease/scaffold protein [Phage cdtI]
 gi|148524716|dbj|BAF63338.1| putative protease/scaffold protein [Phage cdtI]
          Length = 652

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   
Sbjct: 31  LNALGDITHINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPV 90

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N  +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 91  --IMPENTFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLA 148

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 149 DETWMSGAECLAQGFADQV 167


>gi|315252308|gb|EFU32276.1| Clp protease [Escherichia coli MS 85-1]
          Length = 173

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   
Sbjct: 31  LNALGDITHINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPV 90

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N  +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 91  --IMPENTFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLA 148

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 149 DETWMSGAECLAHGFADQV 167


>gi|320197734|gb|EFW72342.1| putative protease/scaffold protein [Escherichia coli EC4100B]
          Length = 652

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   
Sbjct: 31  LNALGDITHINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPV 90

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N+ +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 91  --IMPENSFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLA 148

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 149 DETWMSGAECLAQGFADQV 167


>gi|331683048|ref|ZP_08383649.1| putative protease/scaffold protein [Escherichia coli H299]
 gi|331079263|gb|EGI50460.1| putative protease/scaffold protein [Escherichia coli H299]
          Length = 605

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   
Sbjct: 31  LNALGDITHINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPV 90

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N+ +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 91  --IMPENSFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLA 148

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 149 DETWMSGAECLAQGFADQV 167


>gi|153814261|ref|ZP_01966929.1| hypothetical protein RUMTOR_00470 [Ruminococcus torques ATCC 27756]
 gi|145848657|gb|EDK25575.1| hypothetical protein RUMTOR_00470 [Ruminococcus torques ATCC 27756]
          Length = 268

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/177 (27%), Positives = 84/177 (47%), Gaps = 4/177 (2%)

Query: 42  ERIVFVTGQIEDHMA--TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           ER +F+ G I D       +  QL   E       I+++INSPGG V A   IY+ ++  
Sbjct: 20  ERTLFLNGMISDETWYGDEVTPQLFKDELNAGNGNITVWINSPGGDVFAAAQIYNMLRDY 79

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
           K  ++    G AAS  S++  AG+       P A +++H P+    G+A D+++    + 
Sbjct: 80  KGSVTVKIDGIAASAASVIAMAGDTVC--VSPVAMMMIHNPATMAMGEAKDMQKAIAMLN 137

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           ++K  +   Y    G T   +   +D +   +A +A + G  DK+L    + E+K K
Sbjct: 138 EVKESILNAYEFKTGLTRARLSHMMDDETWFNAKKAVELGFADKILFDSDEDEKKKK 194


>gi|315253278|gb|EFU33246.1| Clp protease [Escherichia coli MS 85-1]
          Length = 606

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   
Sbjct: 31  LNALGDITHINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPV 90

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N  +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 91  --IMPENTFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLA 148

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 149 DETWMSGAECLAQGFADQV 167


>gi|309798015|ref|ZP_07692392.1| Clp protease [Escherichia coli MS 145-7]
 gi|308118391|gb|EFO55653.1| Clp protease [Escherichia coli MS 145-7]
          Length = 652

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 7/162 (4%)

Query: 45  VFVTGQIEDH--MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           +++  +I      A    + L  L        I+L+INSPGG V  G+AI++ ++     
Sbjct: 11  IYIYDEIGFWGVTAKQFISDLNTL---GDITHINLHINSPGGDVFEGIAIFNALKTHGAS 67

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIK 162
           I+ +  G AASM S++   G         N  +++H+P G   G A D+  +A  + K++
Sbjct: 68  ITVYVDGVAASMASVIAMVGNPV--IMPENTFMMIHKPFGFTGGDAEDMRTYADLLDKVE 125

Query: 163 RRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             L   Y +  GKT +E+   L  +  MS +E    G  D+V
Sbjct: 126 AVLLPAYAQKTGKTTDEIAAMLADETWMSGAECLAQGFADQV 167


>gi|221132127|ref|XP_002163612.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 112

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 59/95 (62%), Positives = 77/95 (81%)

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           GVVTAG+AIYDTMQFI+PPI+T+C+GQA SMGSLLL++G KG+R ALP++RI+LHQP GG
Sbjct: 1   GVVTAGLAIYDTMQFIEPPIATWCVGQACSMGSLLLASGSKGLRHALPHSRIMLHQPHGG 60

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYE 178
             GQA+DI   A++I+ +K  LN+IY  + GK   
Sbjct: 61  VQGQATDIAIQAKEILHLKTMLNKIYSIHTGKDVA 95


>gi|294460153|gb|ADE75659.1| unknown [Picea sitchensis]
          Length = 254

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 63/159 (39%), Positives = 95/159 (59%), Gaps = 8/159 (5%)

Query: 6   CAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF 65
            AKK +  +  G++      T  G    D+ S LL+ R+VF+   I   +A  + +QL+ 
Sbjct: 103 AAKKGNPPITPGIM------TPAGP--LDLMSVLLRSRVVFIGQPINAQVAQRVISQLMT 154

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A +P  +I +Y+N PGG + + +AIYD M +IKP + T C G AAS  +LLL+ GEKG
Sbjct: 155 LAAIDPDADILMYLNCPGGSIYSILAIYDCMSWIKPKVGTVCFGVAASQAALLLAGGEKG 214

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRR 164
           MR+A+PN+RI++HQP GG  G   D+ R   ++V  +  
Sbjct: 215 MRYAMPNSRIMIHQPQGGCGGNIEDVWRQVNELVASRDE 253


>gi|226940692|ref|YP_002795766.1| ATP-dependent Clp protease proteolytic subunit [Laribacter
           hongkongensis HLHK9]
 gi|226715619|gb|ACO74757.1| ATP-dependent Clp protease proteolytic subunit [Laribacter
           hongkongensis HLHK9]
          Length = 252

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 2/138 (1%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I L INSPGG V A  A+   ++  K  I     G AAS  + +  AG++        A 
Sbjct: 69  IHLRINSPGGSVFAARAMEQALREHKARIVVHIDGIAASAATFIAMAGDEI--VMNKGAM 126

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
            ++H+     +G A D+ + A  + KI   L + Y    GK  E +   +  +   +A E
Sbjct: 127 FMIHKAWTWTAGNADDLAKEAGLLAKIDGTLAQTYADRTGKDVETINGWMADETWFTADE 186

Query: 195 ACDWGVVDKVLMSRIDIE 212
           A ++G  DK+  +    E
Sbjct: 187 AVEYGFADKLAETEARAE 204


>gi|323172062|gb|EFZ57702.1| clp protease family protein [Escherichia coli LT-68]
          Length = 252

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 45/139 (32%), Positives = 70/139 (50%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   
Sbjct: 31  LNALGDITHINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGTPV 90

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N  +++H+P G   G A D+  +A  + K++  L   Y +  GKT +EV   L 
Sbjct: 91  --IMPENTFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEVAAMLA 148

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS +E    G  D+V
Sbjct: 149 DETWMSGAECLAHGFADQV 167


>gi|213622512|ref|ZP_03375295.1| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 95

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 72/95 (75%), Positives = 86/95 (90%)

Query: 41  KERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           KER++F+TGQ+EDHMA LI AQ+LFLEAENP+K+I LYINSPGGV+TAGM+IYDTMQFIK
Sbjct: 1   KERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIK 60

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           P +ST CMGQAASMG+ LL+AG KG RF LPN+R+
Sbjct: 61  PDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRV 95


>gi|52079942|ref|YP_078733.1| ATP-dependent Clp protease proteolytic subunit (class III
           heat-shock protein) [Bacillus licheniformis ATCC 14580]
 gi|52785314|ref|YP_091143.1| hypothetical protein BLi01550 [Bacillus licheniformis ATCC 14580]
 gi|52003153|gb|AAU23095.1| ATP-dependent Clp protease proteolytic subunit (class III
           heat-shock protein) [Bacillus licheniformis ATCC 14580]
 gi|52347816|gb|AAU40450.1| putative protein [Bacillus licheniformis ATCC 14580]
          Length = 248

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 77/154 (50%), Gaps = 6/154 (3%)

Query: 55  MATLICAQLL--FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAA 112
               +  Q     L+       +++YINSPGG V  G +IY+ ++  K  ++ +  G AA
Sbjct: 34  WGDEVTTQTFKEDLDGLGEVSALNIYINSPGGSVFEGNSIYNIIKRHKAHVNVYVDGLAA 93

Query: 113 SMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKN 172
           S+ S++  +G+    F   NA +++H P     G A ++ + A D+ +I+  L E Y+  
Sbjct: 94  SIASVIAMSGDAI--FMPANAMMMIHNPWTVAQGNAEELRKQADDMDRIRESLIEAYLGK 151

Query: 173 CGKTY--EEVEKTLDRDHIMSASEACDWGVVDKV 204
            G+    + + + +D +  ++A E  + G+ D +
Sbjct: 152 AGEKLNRDRLIELMDAETWLTAQECLELGLCDSI 185


>gi|126207994|ref|YP_001053219.1| putative Clp-like protease [Actinobacillus pleuropneumoniae L20]
 gi|190149760|ref|YP_001968285.1| Clp-like protease [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|126096786|gb|ABN73614.1| putative Clp-like protease [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
 gi|189914891|gb|ACE61143.1| putative Clp-like protease [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
          Length = 674

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 52/193 (26%), Positives = 89/193 (46%), Gaps = 9/193 (4%)

Query: 16  LGLVPM---VVEQTNRGERSYDIYSRLLKERIVFVTGQIEDH--MATLICAQLLFLEAEN 70
           + L PM   V       +  + I +       + +  +I      A      L  L   N
Sbjct: 6   MVLAPMAKAVAVTKTNNQSWFTIKAAANDTAEISIYDEIGFWGVTAQQFANDLKAL--GN 63

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
             K+I+L+I+SPGG V  G+AIY+ ++      + +  G AASM S++  AG +      
Sbjct: 64  NLKQINLHIHSPGGDVFDGIAIYNLLKNHPANKTVYIDGLAASMASVIAMAGNEI--IMP 121

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
            NA +++H+P G   G A D+ ++A  + K++  L   YV    K+ EE+ + L  +  +
Sbjct: 122 ENAMMMIHKPWGIQGGDADDMRKYADLLDKVESTLIMAYVAKTEKSEEELAEMLKEETWL 181

Query: 191 SASEACDWGVVDK 203
           +  E  + G  DK
Sbjct: 182 TGKECVEQGFADK 194


>gi|74311435|ref|YP_309854.1| putative protease/scaffold protein [Shigella sonnei Ss046]
 gi|73854912|gb|AAZ87619.1| putative protease/scaffold protein [Shigella sonnei Ss046]
          Length = 381

 Score =  131 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 2/132 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           EI L I+SPGG +  G+AIY+ ++           G AASM S +   G+        NA
Sbjct: 44  EIHLRIHSPGGDIFEGLAIYNALKNHPAKKIVHIEGMAASMASFIAMCGDHI--VMPENA 101

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H P G  +G + D+ R A  + K+   + E Y    G++ +E+   ++ +  M  +
Sbjct: 102 MMMIHAPRGVTAGVSGDVRRFADLMDKLGDTMAETYAGRTGRSKQEITAMMEAETWMDGN 161

Query: 194 EACDWGVVDKVL 205
           E    G  D+V+
Sbjct: 162 ECKANGFADEVI 173


>gi|153932099|ref|YP_001384751.1| putative Clp protease [Clostridium botulinum A str. ATCC 19397]
 gi|152928143|gb|ABS33643.1| putative Clp protease [Clostridium botulinum A str. ATCC 19397]
          Length = 252

 Score =  131 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 43/145 (29%), Positives = 77/145 (53%), Gaps = 4/145 (2%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L++      +++YINSPGG V  G AIY+ ++  K  I+    G AAS+ S++  AG   
Sbjct: 46  LDSLGDIDTLNIYINSPGGSVFQGQAIYNIIKRHKAKINIHVDGVAASIASVIAMAGNTI 105

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCG--KTYEEVEKT 183
             F   N+ +++H P     G A ++ + A D+ KI+  L E Y+   G   + E +   
Sbjct: 106 --FMPKNSMMMIHNPWTFAYGNAKELRKQADDLDKIRESLIEAYLSKAGDKLSRETLIGI 163

Query: 184 LDRDHIMSASEACDWGVVDKVLMSR 208
           +D +  ++A E  D+G+ D+++  +
Sbjct: 164 MDNETWLTAQECYDYGLCDELVEEK 188


>gi|218694488|ref|YP_002402155.1| putative ATP-dependent Clp protease proteolytic subunit
           (Endopeptidase Clp) of prophage [Escherichia coli 55989]
 gi|218351220|emb|CAU96924.1| putative ATP-dependent Clp protease proteolytic subunit
           (Endopeptidase Clp) of prophage [Escherichia coli 55989]
          Length = 723

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 51/178 (28%), Positives = 85/178 (47%), Gaps = 13/178 (7%)

Query: 27  NRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVV 86
             G+   DIY   + + I F         A    + +  L        I+L+INSPGG V
Sbjct: 75  AGGQGEADIY---IYDEIGFWG-----VTAKQFVSDMNAL---GDITHINLHINSPGGDV 123

Query: 87  TAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG 146
             G+AI++ ++     I+ +  G AASM SL+  AG+        NA +++H+P G   G
Sbjct: 124 FEGIAIFNALKNHGAAITVYVDGVAASMASLIAMAGDTV--IMPENAFMMIHKPWGISGG 181

Query: 147 QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            A  +  +A+ + K++  +  +Y +  GKT +E+   L  +  MS +E    G  D+V
Sbjct: 182 DAEKMRTYAERLDKLESVMVPVYAQKTGKTTDEIAAMLADETWMSGAECLAHGFADQV 239


>gi|163790237|ref|ZP_02184670.1| hypothetical protein CAT7_04934 [Carnobacterium sp. AT7]
 gi|159874512|gb|EDP68583.1| hypothetical protein CAT7_04934 [Carnobacterium sp. AT7]
          Length = 246

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 83/176 (47%), Gaps = 5/176 (2%)

Query: 42  ERIVFVTGQIEDHMATL---ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           + I+ ++G I          I A+L+    +    +I +Y+NS GG V  G+ IY+ ++ 
Sbjct: 19  KHILTLSGTIRQRYWDDDKSIDAKLVSDSLDGVTDDIVIYLNSTGGDVFQGIEIYNYLKN 78

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
               I+    G AAS  + +++  ++           ++H+ S    G  +D+++    +
Sbjct: 79  HSSHITVEVTGTAASAATFIVAGADEA--IMNTGTSFMIHEASSFAWGNKADLKKTLNAL 136

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
             I   +  IY +  G++ E++   ++ +   +A EA  +G  +KV  ++ DI ++
Sbjct: 137 ETIDESIIAIYTEKTGQSNEQLNDWMEEEKWFTAEEAVKYGFANKVKENKKDITDQ 192


>gi|310779736|ref|YP_003968068.1| peptidase S14 ClpP [Ilyobacter polytropus DSM 2926]
 gi|309749059|gb|ADO83720.1| peptidase S14 ClpP [Ilyobacter polytropus DSM 2926]
          Length = 361

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 45/173 (26%), Positives = 82/173 (47%), Gaps = 6/173 (3%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPI 103
           IV +     D  A   C +L  +EAE    EI + INSPGG V    AIY++++     +
Sbjct: 26  IVNIPCWEGDVSANSFCRELEKIEAE----EILVRINSPGGDVFEAQAIYNSLKNHPAKV 81

Query: 104 STFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKR 163
                  AAS  +++  AG++       NA  ++H P    SG+A D  + A+ +  I+ 
Sbjct: 82  IVRIDALAASAATVIAMAGDEI--LMPENAIFMIHNPWSWSSGEAKDFRKKAETMDTIRE 139

Query: 164 RLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
            +  +Y      + EE+   +D +  +++ EA D G + ++L  + +  +  +
Sbjct: 140 TIVNVYASKSTLSREEIMNKMDEESWLTSQEAFDAGFITEILSLKAEDSDTEE 192


>gi|260889396|ref|ZP_05900659.1| putative prophage L54a, Clp protease [Leptotrichia hofstadii F0254]
 gi|260860807|gb|EEX75307.1| putative prophage L54a, Clp protease [Leptotrichia hofstadii F0254]
          Length = 260

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 80/171 (46%), Gaps = 4/171 (2%)

Query: 44  IVFVTGQIEDHMATLICAQLL--FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP 101
           ++       D     +  ++    +E     + I+LYINSPGG V + +AI +T++  K 
Sbjct: 21  LILYGSIGSDEYWDDVSDKVFKQDIENLGDVENITLYINSPGGSVFSAVAIANTLKNHKA 80

Query: 102 PISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKI 161
            ++    G AAS  +++ SA +        NA  ++H P     G   ++++  + + K+
Sbjct: 81  KVTANIDGLAASAATIITSACDTVR--MPKNALFMIHNPITFAYGNNQEMQKTVEMLNKV 138

Query: 162 KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
           K  + E Y+       E + + +D +  M A  A ++G VD+++   +  E
Sbjct: 139 KNSIIETYLNKAKTDKETLSELMDNETWMDAETAKEYGFVDEIVNEEVGKE 189


>gi|51773721|emb|CAC83157.2| putative protease/scaffold protein [Enterobacteria phage CP-1639]
          Length = 706

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 51/178 (28%), Positives = 85/178 (47%), Gaps = 13/178 (7%)

Query: 27  NRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVV 86
             G+   DIY   + + I F         A    + +  L        I+L+INSPGG V
Sbjct: 58  AGGQGEADIY---IYDEIGFWG-----VTAKQFVSDMNAL---GDITHINLHINSPGGDV 106

Query: 87  TAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG 146
             G+AI++ ++     I+ +  G AASM SL+  AG+        NA +++H+P G   G
Sbjct: 107 FEGIAIFNALKNHGAAITVYVDGVAASMASLIAMAGDTV--IMPENAFMMIHKPWGISGG 164

Query: 147 QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            A  +  +A+ + K++  +  +Y +  GKT +E+   L  +  MS +E    G  D+V
Sbjct: 165 DAEKMRTYAERLDKLESVMVPVYAQKTGKTTDEIAAMLADETWMSGAECLAHGFADQV 222


>gi|168236516|ref|ZP_02661574.1| Clp protease domain protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194737695|ref|YP_002113659.1| ATP-dependent protease [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194713197|gb|ACF92418.1| ATP-dependent protease [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197290311|gb|EDY29667.1| Clp protease domain protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
          Length = 689

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 42/141 (29%), Positives = 74/141 (52%), Gaps = 2/141 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A     +I+L+I+SPGG +  G+AIY+ ++        +  G A SM S++   G+  
Sbjct: 48  LVALGSITQINLHIHSPGGSIFDGLAIYNLLKNHPARKVVYVDGVACSMASVIAMVGDPV 107

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 NA +++H+P G   G++SDI  +A  + K++  +  IY +  GK+ +++   L 
Sbjct: 108 --IMPENAMMMIHRPRGIAGGESSDIRDYADLLDKMESVIIPIYAEKTGKSPDDIAALLA 165

Query: 186 RDHIMSASEACDWGVVDKVLM 206
            +  MS +E    G  DKV+ 
Sbjct: 166 SETWMSGAECVREGFADKVIQ 186


>gi|63055014|gb|AAY29045.1| predicted ATP-dependent Clp protease proteolytic subunit 2
           [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 160

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 62/137 (45%), Positives = 95/137 (69%), Gaps = 2/137 (1%)

Query: 3   FEGCAKKDSEDVFLG--LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           F   + + ++       ++P  VE+T  G ++ D YSRL ++RI+F+  Q++D  A  + 
Sbjct: 24  FMPASARAAQPAPTNRYIMPQFVEKTPYGMKTQDAYSRLFEDRIIFLGVQVDDASADDVM 83

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLL LE+++P +++ +YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL+
Sbjct: 84  AQLLVLESQDPNRDVMMYINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLA 143

Query: 121 AGEKGMRFALPNARILL 137
           +G KG R  LPNAR+L+
Sbjct: 144 SGTKGKRLMLPNARVLI 160


>gi|16764274|ref|NP_459889.1| ATP-dependent protease [Salmonella phage Fels-1]
 gi|16419422|gb|AAL19848.1| Fels-1 prophage protease subunits of ATP-dependent proteases
           [Salmonella phage Fels-1]
          Length = 728

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 42/141 (29%), Positives = 74/141 (52%), Gaps = 2/141 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A     +I+L+I+SPGG +  G+AIY+ ++        +  G A SM S++   G+  
Sbjct: 85  LVALGSITQINLHIHSPGGSIFDGLAIYNLLKNHPARKVVYVDGVACSMASVIAMVGDPV 144

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 NA +++H+P G   G++SDI  +A  + K++  +  IY +  GK+ +++   L 
Sbjct: 145 --IMPENAMMMIHRPRGIAGGESSDIRDYADLLDKMESVIIPIYAEKTGKSPDDIAALLA 202

Query: 186 RDHIMSASEACDWGVVDKVLM 206
            +  MS +E    G  DKV+ 
Sbjct: 203 SETWMSGAECVREGFADKVIQ 223


>gi|238695592|ref|YP_002922619.1| P05 [Xanthomonas phage phiL7]
 gi|190343959|gb|ACE75745.1| P05 [Xanthomonas phage phiL7]
          Length = 245

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 46/174 (26%), Positives = 87/174 (50%), Gaps = 4/174 (2%)

Query: 43  RIVFVTGQIEDHM--ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           R + + G+I + +       AQ+  +  +    ++++ I+SPGG + AG+AIY+ ++   
Sbjct: 41  RAIDIFGEIGEDLYGEGTTSAQISQMLRDMGPGDVTVNIDSPGGDMFAGLAIYNQLRAHD 100

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
             ++   +G AAS  S++  AG+  +    P A I++HQ     +G + D    A+ +  
Sbjct: 101 GVVTVNVVGTAASAASVIAMAGD--VVNMHPAAFIMIHQTWLLAAGNSRDFIALAEMLAP 158

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
             + + EIY    GK   EVE+ +  +   +A EA  +G+ DKVL       ++
Sbjct: 159 FDKAMAEIYASRTGKPLAEVEQLMAEETWFNAEEAVAYGLADKVLDPEASKNKR 212


>gi|167549367|ref|ZP_02343126.1| Clp protease domain protein [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|204929808|ref|ZP_03220829.1| Clp protease domain protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204320802|gb|EDZ06003.1| Clp protease domain protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205325423|gb|EDZ13262.1| Clp protease domain protein [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 689

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 42/141 (29%), Positives = 74/141 (52%), Gaps = 2/141 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A     +I+L+I+SPGG +  G+AIY+ ++        +  G A SM S++   G+  
Sbjct: 48  LVALGSITQINLHIHSPGGSIFDGLAIYNLLKNHPARKVVYVDGVACSMASVIAMVGDPV 107

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 NA +++H+P G   G++SDI  +A  + K++  +  IY +  GK+ +++   L 
Sbjct: 108 --IMPENAMMMIHRPRGIAGGESSDIRDYADLLDKMESVIIPIYAEKTGKSPDDIAALLA 165

Query: 186 RDHIMSASEACDWGVVDKVLM 206
            +  MS +E    G  DKV+ 
Sbjct: 166 SETWMSGAECVREGFADKVIQ 186


>gi|56419065|ref|YP_146383.1| serine protease [Geobacillus kaustophilus HTA426]
 gi|56378907|dbj|BAD74815.1| serine protease (phage related-protein, ClpP family) [Geobacillus
           kaustophilus HTA426]
          Length = 255

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 94/186 (50%), Gaps = 10/186 (5%)

Query: 23  VEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSP 82
           ++ +  G  S DI+  +  +    +     D   T   +    L+A      I+LYINSP
Sbjct: 12  IKMSADGSNSADIF--IYGD----IVSYQWDETDTSAASFKKDLDAVGDVDTINLYINSP 65

Query: 83  GGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSG 142
           GG V  G+AI++ ++  K  I+ +    AAS+ S++  AG+        NA +++H P  
Sbjct: 66  GGNVFEGVAIHNMLKRHKAKINVYVDALAASIASVIAMAGDTI--HMPKNAMLMIHNPWT 123

Query: 143 GFSGQASDIERHAQDIVKIKRRLNEIYVKNCG--KTYEEVEKTLDRDHIMSASEACDWGV 200
              G A+++ + A D+ +I   + + Y++  G   T E++++ LD +  +SA EA + G+
Sbjct: 124 WTYGNAAELRKVADDLDRIGNSIKQTYLQKAGDKLTEEKLQEMLDAETWLSADEAYEHGL 183

Query: 201 VDKVLM 206
            D VL 
Sbjct: 184 CDVVLE 189


>gi|313123951|ref|YP_004034210.1| ATP-dependent clp protease proteolytic subunit [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312280514|gb|ADQ61233.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 244

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 40/143 (27%), Positives = 75/143 (52%), Gaps = 4/143 (2%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L+     K I+L+INSPGG V  G+AIY+ ++  K  I+ +  G AAS+ S++  AG   
Sbjct: 44  LKQIGDVKTINLHINSPGGDVFEGVAIYNMLKQSKADINVYIDGLAASIASVIAMAGNTI 103

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCG--KTYEEVEKT 183
                 N+ +++H P     G + ++ + A D+ K+   +   Y+         + + + 
Sbjct: 104 --IMPENSMLMIHNPWTIAQGNSKELRKIADDMDKMSESIKTSYLSKSNDKLDLDTLNQL 161

Query: 184 LDRDHIMSASEACDWGVVDKVLM 206
           +D +  ++A EA ++G+ D+VL 
Sbjct: 162 MDEETWLTAKEATEYGLADEVLE 184


>gi|169257188|ref|YP_001700566.1| putative Clp protease [Salmonella phage Fels-1]
          Length = 706

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 42/141 (29%), Positives = 74/141 (52%), Gaps = 2/141 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A     +I+L+I+SPGG +  G+AIY+ ++        +  G A SM S++   G+  
Sbjct: 63  LVALGSITQINLHIHSPGGSIFDGLAIYNLLKNHPARKVVYVDGVACSMASVIAMVGDPV 122

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 NA +++H+P G   G++SDI  +A  + K++  +  IY +  GK+ +++   L 
Sbjct: 123 --IMPENAMMMIHRPRGIAGGESSDIRDYADLLDKMESVIIPIYAEKTGKSPDDIAALLA 180

Query: 186 RDHIMSASEACDWGVVDKVLM 206
            +  MS +E    G  DKV+ 
Sbjct: 181 SETWMSGAECVREGFADKVIQ 201


>gi|300902358|ref|ZP_07120346.1| Clp protease [Escherichia coli MS 84-1]
 gi|300405561|gb|EFJ89099.1| Clp protease [Escherichia coli MS 84-1]
          Length = 168

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 43/138 (31%), Positives = 70/138 (50%), Gaps = 2/138 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AI++ ++     I+ +  G AASM S++   G   
Sbjct: 31  LNALGDITHINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASMASVIAMVGNPV 90

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N+ +++H+P G   G A D+  +A  + K++  L   Y +  GKT +E+   L 
Sbjct: 91  --IMPENSFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLA 148

Query: 186 RDHIMSASEACDWGVVDK 203
            +  MS +E    G  D+
Sbjct: 149 DETWMSGAECLAHGFADQ 166


>gi|163785571|ref|ZP_02180137.1| ATP-dependent Clp protease proteolytic subunit [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159879161|gb|EDP73099.1| ATP-dependent Clp protease proteolytic subunit [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 97

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 66/96 (68%), Positives = 81/96 (84%)

Query: 6   CAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF 65
            +K D + +   LVP+VVEQT RGER+YDIYSRLLK+RIV +   I+DH+A LI AQLLF
Sbjct: 2   SSKNDIDRIVSQLVPIVVEQTPRGERAYDIYSRLLKDRIVLLGFPIDDHIANLIVAQLLF 61

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP 101
           LE+E+P+K+I LYINSPGGVVTAG+AIYDTMQ+IKP
Sbjct: 62  LESEDPEKDIYLYINSPGGVVTAGLAIYDTMQYIKP 97


>gi|330433345|gb|AEC18404.1| ATP-dependent Clp protease proteolytic subunit [Gallibacterium
           anatis UMN179]
          Length = 654

 Score =  131 bits (329), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 42/147 (28%), Positives = 78/147 (53%), Gaps = 4/147 (2%)

Query: 59  ICAQLL--FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
           + AQ     L+     ++I+L+I+SPGG V  G+AIY+ ++      + +  G AASM S
Sbjct: 28  VSAQQFANELKEIGNVRQINLHIHSPGGDVFDGIAIYNLLKNHPANKTVYIDGLAASMAS 87

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
           ++  AG++       NA +++H+P G   G A ++ ++A  + K++  L   Y+   GK+
Sbjct: 88  VIAMAGDEV--IMPENAMLMIHKPWGIQGGDAEELRKYADLLDKVESTLLMAYIAKTGKS 145

Query: 177 YEEVEKTLDRDHIMSASEACDWGVVDK 203
            +E+   L  +  ++  E  + G  DK
Sbjct: 146 EDELAAMLAVETWLTGKECVELGFADK 172


>gi|327253812|gb|EGE65441.1| clp protease family protein [Escherichia coli STEC_7v]
          Length = 651

 Score =  131 bits (329), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 51/178 (28%), Positives = 85/178 (47%), Gaps = 13/178 (7%)

Query: 27  NRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVV 86
             G+   DIY   + + I F         A    + +  L        I+L+INSPGG V
Sbjct: 3   AGGQGEADIY---IYDEIGFWG-----VTAKQFVSDMNAL---GDITHINLHINSPGGDV 51

Query: 87  TAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG 146
             G+AI++ ++     I+ +  G AASM SL+  AG+        NA +++H+P G   G
Sbjct: 52  FEGIAIFNALKNHGAAITVYVDGVAASMASLIAMAGDTV--IMPENAFMMIHKPWGISGG 109

Query: 147 QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            A  +  +A+ + K++  +  +Y +  GKT +E+   L  +  MS +E    G  D+V
Sbjct: 110 DAEKMRTYAERLDKLESVMVPVYAQKTGKTTDEIAAMLADETWMSGAECLAHGFADQV 167


>gi|307245367|ref|ZP_07527455.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307254322|ref|ZP_07536160.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258780|ref|ZP_07540512.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306853708|gb|EFM85925.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306862621|gb|EFM94577.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867131|gb|EFM98987.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 652

 Score =  131 bits (329), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 41/131 (31%), Positives = 72/131 (54%), Gaps = 2/131 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K+I+L+I+SPGG V  G+AIY+ ++      + +  G AASM S++  AG +       N
Sbjct: 44  KQINLHIHSPGGDVFDGIAIYNLLKNHPANKTVYIDGLAASMASVIAMAGNEI--IMPEN 101

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A +++H+P G   G A D+ ++A  + K++  L   YV   GK+  ++ + L  +  ++ 
Sbjct: 102 AMMMIHKPWGIQGGDADDMRKYADLLDKVESTLIMAYVAKTGKSESDLAEMLKVETWLTG 161

Query: 193 SEACDWGVVDK 203
            E  + G  DK
Sbjct: 162 KECVEQGFADK 172


>gi|194430149|ref|ZP_03062651.1| peptidase S14, ClpP [Escherichia coli B171]
 gi|194411813|gb|EDX28133.1| peptidase S14, ClpP [Escherichia coli B171]
 gi|323159483|gb|EFZ45464.1| clp protease family protein [Escherichia coli E128010]
          Length = 651

 Score =  131 bits (329), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 51/178 (28%), Positives = 85/178 (47%), Gaps = 13/178 (7%)

Query: 27  NRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVV 86
             G+   DIY   + + I F         A    + +  L        I+L+INSPGG V
Sbjct: 3   AGGQGEADIY---IYDEIGFWG-----VTAKQFVSDMNAL---GDITHINLHINSPGGDV 51

Query: 87  TAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG 146
             G+AI++ ++     I+ +  G AASM SL+  AG+        NA +++H+P G   G
Sbjct: 52  FEGIAIFNALKNHGAAITVYVDGVAASMASLIAMAGDTV--IMPENAFMMIHKPWGISGG 109

Query: 147 QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            A  +  +A+ + K++  +  +Y +  GKT +E+   L  +  MS +E    G  D+V
Sbjct: 110 DAEKMRTYAERLDKLESVMVPVYAQKTGKTTDEIAAMLADETWMSGAECLAHGFADQV 167


>gi|32401338|gb|AAP80841.1| ATP-dependent Clp protease proteolytic subunit [Griffithsia
           japonica]
          Length = 114

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 56/110 (50%), Positives = 73/110 (66%), Gaps = 2/110 (1%)

Query: 19  VPMVVEQTNRGER--SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           VP V+ +     +    DIY+RL +ERI+F+  +I+D +A  I A +L+LE+E+  K I 
Sbjct: 5   VPKVLFRVPGAPQADWVDIYNRLYRERIIFLGQEIDDEIANQIIAVMLYLESEDNSKPIY 64

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           LYINSPGG V AGMAIYDTM+ IK  + T  +G AASM S LL  GEKG 
Sbjct: 65  LYINSPGGSVIAGMAIYDTMKHIKSEVVTINVGLAASMASFLLGGGEKGK 114


>gi|322381666|ref|ZP_08055631.1| ATP-dependent Clp protease proteolytic subunit-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321154378|gb|EFX46689.1| ATP-dependent Clp protease proteolytic subunit-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 238

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 85/166 (51%), Gaps = 8/166 (4%)

Query: 45  VFVTGQIEDHMATLI----CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           +F+ G I  +    +     +    L+       I+LYINSPGG V  G+AI++ ++  K
Sbjct: 11  IFIYGDIVTYQWDEVDTSATSFKEDLDRLGDLSTINLYINSPGGSVFEGIAIHNMLKRHK 70

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
             +       AAS+ S++  AG+    +   N+ +++H P     G AS++ + A D+ +
Sbjct: 71  ANVHVHVDALAASIASVIAMAGDP--FYMPKNSMLMIHNPWIFAWGNASEMRKIADDLDR 128

Query: 161 IKRRLNEIYVKNCG--KTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           I     ++Y++  G   + E+++  LD +  +SA EA ++G+ D V
Sbjct: 129 IGNSSKQVYLQKAGDKLSDEKLQDMLDAETWLSADEAFEYGLCDVV 174


>gi|167465665|ref|ZP_02330754.1| serine protease (phage related-protein, ClpP family) [Paenibacillus
           larvae subsp. larvae BRL-230010]
          Length = 238

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 85/166 (51%), Gaps = 8/166 (4%)

Query: 45  VFVTGQIEDHMATLI----CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           +F+ G I  +    +     +    L+       I+LYINSPGG V  G+AI++ ++  K
Sbjct: 11  IFIYGDIVTYQWDEVDTSATSFKEDLDRLGDLSTINLYINSPGGSVFEGIAIHNMLKRHK 70

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
             +       AAS+ S++  AG+    +   N+ +++H P     G AS++ + A D+ +
Sbjct: 71  ANVHVHVDALAASIASVIAMAGDTI--YMPKNSMLMIHNPWIFAWGNASEMRKIADDLDR 128

Query: 161 IKRRLNEIYVKNCG--KTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           I     ++Y++  G   + E+++  LD +  +SA EA ++G+ D V
Sbjct: 129 IGNSSKQVYLQKAGDKLSDEKLQDMLDAETWLSADEAFEYGLCDVV 174


>gi|77409468|ref|ZP_00786161.1| Clp protease [Streptococcus agalactiae COH1]
 gi|77171935|gb|EAO75111.1| Clp protease [Streptococcus agalactiae COH1]
          Length = 118

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 61/109 (55%), Positives = 80/109 (73%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TGQ+ED+MA  I AQLLFL+A++  K+I L
Sbjct: 1   MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGQVEDNMANSIIAQLLFLDAQDNTKDIYL 60

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           Y+N+PGG V+AG+AI DTM FIK  + T   G       LLL    K  
Sbjct: 61  YVNTPGGSVSAGLAIVDTMNFIKSDVQTMLWGWLLRWEPLLLQVVLKEN 109


>gi|167461037|ref|ZP_02326126.1| serine protease (phage related-protein, ClpP family) [Paenibacillus
           larvae subsp. larvae BRL-230010]
          Length = 238

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/153 (28%), Positives = 81/153 (52%), Gaps = 4/153 (2%)

Query: 54  HMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAAS 113
            + T   +    L+       I+LYINSPGG V  G+AI++ ++  K  +  +    AAS
Sbjct: 24  EVDTSAASFKEDLDRLGDLSTINLYINSPGGSVFEGIAIHNMLKRHKANVHVYVDALAAS 83

Query: 114 MGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC 173
           + S++  AG+    +   N+ +++H P     G AS++ + A D+ +I     + Y++  
Sbjct: 84  IASVIAMAGDTI--YMPKNSMLMIHNPWIFAWGNASEMRKIADDLDRIGNSSKQTYLQKA 141

Query: 174 G--KTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           G   + E++++ LD +  +SA EA ++G+ D V
Sbjct: 142 GDKLSDEKLQEMLDAETWLSADEAFEYGLCDVV 174


>gi|304436385|ref|ZP_07396361.1| ATP-dependent Clp protease proteolytic subunit [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
 gi|304370654|gb|EFM24303.1| ATP-dependent Clp protease proteolytic subunit [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
          Length = 229

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/172 (25%), Positives = 77/172 (44%), Gaps = 4/172 (2%)

Query: 41  KERIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           ++R++ + G+I  E      +  Q+   E    + +I L+INSPGG   A   IY+ +  
Sbjct: 14  EKRVLLLDGEISDETWWGDEVTPQMFRSELNAAEGDIDLWINSPGGDCYAAAQIYNMLME 73

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
               ++    G AAS  S++  AG        P   ++LH P     G   ++ER    +
Sbjct: 74  YPGEVTVKIDGIAASAASVVAMAGSTVE--ISPLGLLMLHNPMTVSIGDTHEMERTITFL 131

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
            +IK  +   Y    G +  ++ + +D +  M+A +A + G  D VL    +
Sbjct: 132 SEIKESIINAYELKTGLSRAKISRLMDAETWMNAKKAVELGFADSVLYENRE 183


>gi|218677866|ref|ZP_03525763.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli CIAT
           894]
          Length = 97

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 63/93 (67%), Positives = 83/93 (89%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVPMVVEQ++RGERS+DIYSRLL+ERI+F+ G++ D ++ L+CAQLLFLEAENP+K I
Sbjct: 5   MQLVPMVVEQSSRGERSFDIYSRLLRERIIFLNGEVNDTVSALVCAQLLFLEAENPRKPI 64

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM 108
            LYINSPGGVVT+G+A+YDTM++I+ P+ T CM
Sbjct: 65  HLYINSPGGVVTSGLAMYDTMRYIRAPVHTLCM 97


>gi|229199266|ref|ZP_04325935.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           m1293]
 gi|228584210|gb|EEK42359.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           m1293]
          Length = 106

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 50/89 (56%), Positives = 68/89 (76%)

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
           MAIYDTMQFIKP +ST C+G AASMG+ LL+AGEKG R+ALPN+ +++HQP GG  GQA+
Sbjct: 1   MAIYDTMQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQAT 60

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYE 178
           +IE  A+ I+ ++ +LN+I     G+  E
Sbjct: 61  EIEIAAKRILFLREKLNQILADRTGQPLE 89


>gi|254361891|ref|ZP_04978025.1| S14 family bacteriophage protease [Mannheimia haemolytica PHL213]
 gi|153093430|gb|EDN74421.1| S14 family bacteriophage protease [Mannheimia haemolytica PHL213]
          Length = 653

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/174 (27%), Positives = 85/174 (48%), Gaps = 6/174 (3%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDH--MATLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
            ++I ++      + +  +I      A      L  L   N  K+I+L+I+SPGG V  G
Sbjct: 4   WFNIQAKANDTAEISIFDEIGFWGVTAQQFAKDLKAL--GNNLKQINLHIHSPGGDVFDG 61

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
           +AIY+ ++      + +  G AASM S++  AG++       NA +++H+P G   G A 
Sbjct: 62  IAIYNLLKNHPANKTVYIDGLAASMASVIAMAGDEI--IMPENAMMMIHKPWGIQGGDAD 119

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
           D+ ++A  + K++  L   YV   GK   ++ + L  +  ++  E  + G  DK
Sbjct: 120 DMRKYADLLDKVESTLIMAYVAKTGKYETDLAEMLKEETWLTGKECVEQGFADK 173


>gi|313896403|ref|ZP_07829954.1| endopeptidase Clp [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312974827|gb|EFR40291.1| endopeptidase Clp [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 231

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/167 (27%), Positives = 77/167 (46%), Gaps = 4/167 (2%)

Query: 41  KERIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           ++RI+ + G+I  E      +  Q    E    + +I L+INSPGG   A   IY+ +  
Sbjct: 14  EKRILLLDGEISDETWWGDEVTPQTFRSELNAAEGDIDLWINSPGGDCYAAAQIYNMLME 73

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
            K  ++    G AAS  S++  AG        P A I++H P     G   ++ER    +
Sbjct: 74  YKGNVNVKIDGIAASAASVVAMAGTTVE--MSPVATIMIHNPMTVSIGDTHEMERTITFL 131

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            +IK  +   Y    G +  ++ + +D +  M+A +A + G  D VL
Sbjct: 132 AEIKESIINAYELRTGLSRAKISRLMDAETWMNAKKAVELGFADSVL 178


>gi|313895675|ref|ZP_07829231.1| endopeptidase Clp [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975801|gb|EFR41260.1| endopeptidase Clp [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 231

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 4/167 (2%)

Query: 41  KERIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           ++RI+ + G+I  E      +  Q+   E    + ++ L+INSPGG   A   IY+ +  
Sbjct: 14  EKRILLLDGEISDETWWGDEVTPQMFRSELHAAEGDVDLWINSPGGDCYAAAQIYNMLME 73

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
            K  ++    G AAS  S++  AG        P A I++H P     G   ++ER    +
Sbjct: 74  YKGNVAVKIDGIAASAASVVAMAGSTVE--MSPVATIMIHNPMTVSIGDTHEMERTITFL 131

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            +IK  +   Y    G +  ++ + +D +  M+A +A + G  D VL
Sbjct: 132 SEIKESIINAYELKTGLSRAKISRLMDAETWMNAKKAVELGFADAVL 178


>gi|317403655|gb|EFV84143.1| ATP-dependent Clp protease proteolytic subunit [Achromobacter
           xylosoxidans C54]
          Length = 369

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 4/150 (2%)

Query: 55  MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASM 114
            A    A+L    A     +I + +NSPGG V   +AIY+ ++     ++T   G AAS 
Sbjct: 34  TAEAFVAELDA--AAAGGADIVVSLNSPGGDVFDALAIYNALRRYAGRVTTRVDGFAASA 91

Query: 115 GSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCG 174
            SL+  AG++       NA++++H       G A D+   A  + +++  +   Y +  G
Sbjct: 92  ASLIAMAGDQL--IMPENAQLMIHNAWTITGGTAEDLRSTADMMDRVRDGVVAAYARKSG 149

Query: 175 KTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           +  +++ + +D    MSA EA   G  D +
Sbjct: 150 QDADKIVEMMDATTWMSALEAQALGFCDLI 179


>gi|63055010|gb|AAY29043.1| predicted ATP-dependent Clp protease proteolytic subunit 2
           [Bifidobacterium longum subsp. suis]
          Length = 160

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 61/120 (50%), Positives = 90/120 (75%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P  VE+T  G ++ D YSRL ++RI+F+  Q++D  A  + AQLL LE+++P +++ +
Sbjct: 41  IMPQFVEKTPYGMKTQDAYSRLFEDRIIFLGVQVDDASADDVMAQLLVLESQDPNRDVMM 100

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL++G KG R  LPNAR+L+
Sbjct: 101 YINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLASGTKGKRLMLPNARVLI 160


>gi|313895631|ref|ZP_07829187.1| endopeptidase Clp [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975757|gb|EFR41216.1| endopeptidase Clp [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 229

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 43/172 (25%), Positives = 78/172 (45%), Gaps = 4/172 (2%)

Query: 41  KERIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           ++R++ + G+I  E      +  Q+   E    + +I L+INSPGG   A   IY+ +  
Sbjct: 14  EKRVLLLDGEISDETWWGDEVTPQMFRSELNAAEGDIDLWINSPGGDCYAAAQIYNMLME 73

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
            K  ++    G AAS  S++  AG        P   +++H P     G   ++ER    +
Sbjct: 74  YKGNVAVKIDGIAASAASVVAMAGSTVE--ISPLGMLMIHNPMTVSIGDTHEMERTITFL 131

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
            +IK  +   Y    G +  ++ + +D +  M+A +A + G  D VL    +
Sbjct: 132 AEIKESIINAYELRTGLSRAKISRLMDAETWMNAKKAVELGFADSVLYENRE 183


>gi|76162449|gb|ABA40787.1| SJCHGC02727 protein [Schistosoma japonicum]
          Length = 98

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 61/93 (65%), Positives = 81/93 (87%)

Query: 54  HMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAAS 113
            +A L+ AQLL+L++E+ +  I +YINSPGGVVTAG+AIYDTMQFIKPP++T+C+GQA+S
Sbjct: 3   EVAGLVVAQLLYLQSEDKKIPIHIYINSPGGVVTAGLAIYDTMQFIKPPVATWCVGQASS 62

Query: 114 MGSLLLSAGEKGMRFALPNARILLHQPSGGFSG 146
           MGSLLL+AG  G+RFALP++RI++HQPSG   G
Sbjct: 63  MGSLLLAAGAPGLRFALPHSRIMVHQPSGSAHG 95


>gi|239815455|ref|YP_002944365.1| peptidase S14 ClpP [Variovorax paradoxus S110]
 gi|239802032|gb|ACS19099.1| peptidase S14 ClpP [Variovorax paradoxus S110]
          Length = 227

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 43/129 (33%), Positives = 70/129 (54%), Gaps = 2/129 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K + +YINSPGG V  G+AIY+ ++           G AAS+ S++  AG++ +R A  N
Sbjct: 45  KALDIYINSPGGSVFEGLAIYNQIKRFDGEKIVHVDGIAASIASVIAMAGDE-VRIAA-N 102

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
             I++H P G   G A+D+ + A+ + K++  L E YV   G   E++   +  +  M+A
Sbjct: 103 GTIMIHDPWGMAMGTAADMRKQAESLDKVRDVLLENYVARTGGKREDISSWMTAETWMNA 162

Query: 193 SEACDWGVV 201
            EA + G  
Sbjct: 163 DEAVERGFA 171


>gi|308172739|ref|YP_003919444.1| ATP-dependent Clp protease proteolytic subunit Endopeptidase Clp
           [Bacillus amyloliquefaciens DSM 7]
 gi|307605603|emb|CBI41974.1| ATP-dependent Clp protease proteolytic subunit Endopeptidase Clp
           [Bacillus amyloliquefaciens DSM 7]
          Length = 240

 Score =  128 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 92/182 (50%), Gaps = 8/182 (4%)

Query: 25  QTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG 84
               G+ S D++  +L E +V    + +  + T   +    L+       ++++INSPGG
Sbjct: 13  MKASGDSSADVF--ILGE-VVTSGYEWD-EIDTSAASFKQDLDLLGDMSVLNVHINSPGG 68

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
            V  G+AI   ++  K  ++ +  G AAS+ S++  AG+    F   NA +++H P    
Sbjct: 69  SVFEGVAICSMLKQHKAFVNVYIDGLAASIASVIAMAGDAI--FMPSNAMMMVHNPWTIA 126

Query: 145 SGQASDIERHAQDIVKIKRRLNEIYVKNCG--KTYEEVEKTLDRDHIMSASEACDWGVVD 202
            G A+++ + A  + KI   +   Y++  G   T E ++  +D +  +SASEA  +G+ D
Sbjct: 127 MGNANEMRKQADVLDKISESMKASYLEKAGDKLTKETLDSLMDNETWLSASEAVSYGLAD 186

Query: 203 KV 204
           ++
Sbjct: 187 EI 188


>gi|310778837|ref|YP_003967170.1| peptidase S14 ClpP [Ilyobacter polytropus DSM 2926]
 gi|309748160|gb|ADO82822.1| peptidase S14 ClpP [Ilyobacter polytropus DSM 2926]
          Length = 360

 Score =  128 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 43/143 (30%), Positives = 75/143 (52%), Gaps = 6/143 (4%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI----KPPISTFCMGQAASMGSLLLSA 121
           LE     + I+L INSPGG VT   AIY+ ++         I+T+  G AAS  S +  A
Sbjct: 46  LEELKDTESINLCINSPGGSVTEAHAIYNMLKRYAKANNVKITTYIDGVAASAASYIAMA 105

Query: 122 GEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVE 181
           G++        A +++H  +GG  G++ D+ + A  + K+K  + +IYV     + E + 
Sbjct: 106 GDEIC--MGLGASLMIHNVNGGAWGESKDLRKTADLMDKLKENIIDIYVTQSNLSREVIS 163

Query: 182 KTLDRDHIMSASEACDWGVVDKV 204
             ++ +  M+  EA ++G +DK+
Sbjct: 164 NLMNEETWMTPEEALEYGFIDKI 186


>gi|228966903|ref|ZP_04127944.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228792798|gb|EEM40359.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar sotto str. T04001]
          Length = 241

 Score =  128 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 45/169 (26%), Positives = 87/169 (51%), Gaps = 11/169 (6%)

Query: 45  VFVTGQIEDHMATLICAQLL-------FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97
           +F+ G I   +      + +        L+A      I+L++NSPGG V  G+AIY+ ++
Sbjct: 11  IFIYGDIVRWVWEDYFPEDVSSNTFKDDLDALGDVSTINLHVNSPGGSVFEGIAIYNMLK 70

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
             K  ++ +    AAS+ S++  AG+    +   N+ +++H P     G A+++ + A D
Sbjct: 71  RHKAKVNVYVDALAASIASVIAMAGDTI--YMPKNSMLMIHNPWTWTEGNATELRKAADD 128

Query: 158 IVKIKRRLNEIYVKNCG--KTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           + +I     + Y++  G   T E +++ LD +  +SA EA ++G+ D V
Sbjct: 129 LDRIGNSSKQTYLQKAGEKLTDEMLQEMLDAETWLSADEAYEYGLCDVV 177


>gi|315170930|gb|EFU14947.1| Clp protease [Enterococcus faecalis TX1342]
          Length = 247

 Score =  128 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 86/177 (48%), Gaps = 8/177 (4%)

Query: 42  ERIVFVTGQIEDHMATL---ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           +R++ ++G I     +    I A+ +    +   ++I++ +NSPGG V  G+ IY+ ++ 
Sbjct: 19  KRVLTLSGNIRKKYWSDDDVIDAKSIRETLDGVTEDITIKLNSPGGDVFEGVEIYNYLKD 78

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
               ++    G AAS  + +LSA ++          +++H+ S    G   DI++    +
Sbjct: 79  HPSKVTVEVTGVAASAATFILSAADEA--IMNVGTSVMIHEASTFTWGNKQDIQKTLNAL 136

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
             I   +  IY +  G+T +++E  +  +   +A EA ++G   +V   + + E+ S
Sbjct: 137 ETIDDSILSIYSQKTGQTTDQLETWMKEEKWFTAEEAVEYGFATEV---KKNTEKNS 190


>gi|326491715|dbj|BAJ94335.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 151

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 37/81 (45%), Positives = 62/81 (76%)

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           +LPNAR+++HQPSGG  GQA+DI   A++I+K++ RLN+IY K+ G+  +++E+ ++RD 
Sbjct: 34  SLPNARVMIHQPSGGAQGQATDIAIQAKEILKLRDRLNKIYAKHTGQNIDKIEQCMERDL 93

Query: 189 IMSASEACDWGVVDKVLMSRI 209
            M   EA +WG++D+V+ +R 
Sbjct: 94  FMDPEEAREWGLIDEVIENRP 114


>gi|328910857|gb|AEB62453.1| ATP-dependent Clp protease proteolytic subunit Endopeptidase Clp
           [Bacillus amyloliquefaciens LL3]
          Length = 240

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 47/182 (25%), Positives = 91/182 (50%), Gaps = 8/182 (4%)

Query: 25  QTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG 84
               G+ S D++  +  E +V    + +  + T   +    L+       ++++INSPGG
Sbjct: 13  MKASGDSSADVF--IFGE-VVTSGYEWD-EIDTSAASFKQDLDLLGDMSVLNVHINSPGG 68

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
            V  G+AI   ++  K  ++ +  G AAS+ S++  AG+    F   NA +++H P    
Sbjct: 69  SVFEGVAICSMLKQHKAFVNVYIDGLAASIASVIAMAGDAI--FMPSNAMMMVHNPWTIA 126

Query: 145 SGQASDIERHAQDIVKIKRRLNEIYVKNCG--KTYEEVEKTLDRDHIMSASEACDWGVVD 202
            G A+++ + A  + KI   +   Y++  G   T E ++  +D +  +SASEA  +G+ D
Sbjct: 127 MGNANEMRKQADVLDKISESMKASYLEKAGDKLTKETLDSLMDNETWLSASEAVSYGLAD 186

Query: 203 KV 204
           ++
Sbjct: 187 EI 188


>gi|240950423|ref|ZP_04754674.1| putative Clp-like protease [Actinobacillus minor NM305]
 gi|240295043|gb|EER45899.1| putative Clp-like protease [Actinobacillus minor NM305]
          Length = 676

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 40/131 (30%), Positives = 71/131 (54%), Gaps = 2/131 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K+I+L+I+SPGG V  G+AIY+ ++      + +  G AASM S++  AG +       N
Sbjct: 66  KQINLHIHSPGGDVFDGIAIYNLLKNHPANKTVYIDGLAASMASVIAMAGNEI--IMPEN 123

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A +++H+P G   G A D+ ++A  + K++  L   Y    GK+  ++ + L  +  ++ 
Sbjct: 124 AMMMIHKPWGIQGGDADDMRKYADLLDKVESTLITAYTAKTGKSETDLAEMLKVETWLTG 183

Query: 193 SEACDWGVVDK 203
            E  + G  DK
Sbjct: 184 KECIEQGFADK 194


>gi|237717659|ref|ZP_04548140.1| clp protease [Bacteroides sp. 2_2_4]
 gi|229453061|gb|EEO58852.1| clp protease [Bacteroides sp. 2_2_4]
          Length = 350

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 53/158 (33%), Positives = 89/158 (56%), Gaps = 6/158 (3%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM 108
           G+ +   +  I  +L+  EAE+  ++I + INS GG +  GMAI++  +     I+ +  
Sbjct: 35  GEYDRVRSGDIARELI--EAESASRQIDVRINSIGGDIFTGMAIFNAFRQSAADITIYID 92

Query: 109 GQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           G AASMGS++ + G+         AR+++H PSGG  G A ++E  A  +  ++  L EI
Sbjct: 93  GVAASMGSVIAACGKPVK--MSRYARLMVHSPSGGAYGNAGEMEETAGMLKSLEDTLCEI 150

Query: 169 YVKNCGKTYEEVE-KTLD-RDHIMSASEACDWGVVDKV 204
           Y   C KT EE+  +  D +DH  +A +A + G+VD++
Sbjct: 151 YAARCKKTKEEIRSEWFDGKDHWFTARQAVELGLVDEI 188


>gi|315165627|gb|EFU09644.1| Clp protease [Enterococcus faecalis TX1302]
          Length = 239

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 85/177 (48%), Gaps = 8/177 (4%)

Query: 42  ERIVFVTGQIEDHMATL---ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           +R++ ++G I     +    I A+ +    +    +I++ +NSPGG V  G+ IY+ ++ 
Sbjct: 19  KRVLTLSGNIRKKYWSDDDVIDAKSIRETLDGVTDDITIKLNSPGGDVFEGVEIYNYLKD 78

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
               ++    G AAS  + +LSA ++          +++H+ S    G   DI++    +
Sbjct: 79  HPSKVTVEVTGVAASAATFILSAADEA--IMNVGTSVMIHEASTFTWGNKQDIQKTLNAL 136

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
             I   +  IY +  G+T +++E  +  +   +A EA ++G   +V   + + E+ S
Sbjct: 137 ETIDDSILSIYSQKTGQTTDQLETWMKEEKWFTAEEAVEYGFATEV---KKNTEKNS 190


>gi|15801553|ref|NP_287570.1| putative ClpP-like protease encoded within prophage CP-933O
           [Escherichia coli O157:H7 EDL933]
 gi|12515064|gb|AAG56182.1|AE005347_14 putative ClpP-like protease encoded within prophage CP-933O
           [Escherichia coli O157:H7 str. EDL933]
          Length = 265

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 42/126 (33%), Positives = 67/126 (53%), Gaps = 2/126 (1%)

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           INSPGG V  G+AI++ ++     I+ +  G AASM S++  AG+        NA +++H
Sbjct: 13  INSPGGDVFEGIAIFNALKNQGATITVYVDGVAASMASVIAMAGDTV--IMPENAFMMIH 70

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           +P G   G A D+  +A  + K++  L   Y +  GKT +E+   L  +  MS +E    
Sbjct: 71  KPWGFSGGDAEDMRSYADLLDKVESVLLPAYAQKTGKTTDEIAAMLADETWMSGAECLAH 130

Query: 199 GVVDKV 204
           G  D+V
Sbjct: 131 GFADQV 136


>gi|85001017|ref|XP_955227.1| ATP-dependent Clp protease proteolytic subunit [Theileria annulata
           strain Ankara]
 gi|65303373|emb|CAI75751.1| ATP-dependent Clp protease proteolytic subunit, putative [Theileria
           annulata]
          Length = 261

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 90/166 (54%), Gaps = 10/166 (6%)

Query: 52  EDHMATLICAQLLFLEAENPQKEISLYINSPG---------GVVTAGMAIYDTMQFIKPP 102
              +A L+ +QLL+L+ ++  K I +YINS                 + I D M ++K  
Sbjct: 94  NSGVAHLVISQLLYLDYDSQDKPIKIYINSDNERSNEDGISTSEIDALNIVDVMNYLKNE 153

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ-PSGGFSGQASDIERHAQDIVKI 161
           + T  +G+A    +L+L++G  G R+ LP +  LL Q P+     QA DI  ++++I+K 
Sbjct: 154 VITINLGKAYGPAALILASGTPGKRYVLPRSYTLLRQSPTTLSFRQAEDIAIYSREILKA 213

Query: 162 KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           +R + +++ K C K+ EE+ + ++    M + E  ++G+ DK+L +
Sbjct: 214 RRSVIKVFSKACNKSEEEILEKINVGDYMGSQETVNFGLADKILEN 259


>gi|295114931|emb|CBL35778.1| Protease subunit of ATP-dependent Clp proteases [butyrate-producing
           bacterium SM4/1]
          Length = 246

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 43/177 (24%), Positives = 80/177 (45%), Gaps = 5/177 (2%)

Query: 42  ERIVFVTGQIEDHMA--TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           ER +F+ G I +       +  QL   E       I+++INSPGG   A   IY+ +   
Sbjct: 19  ERTLFLNGTIAEESWFDDDVTPQLFKEELMAGSGNITVWINSPGGDCVAAAQIYNMLMDY 78

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
           K  ++    G AAS  S++  AG +      P   +++H P+    G  +++ +  + + 
Sbjct: 79  KGDVTVKIDGIAASAASVIAMAGTQV--LISPVGMMMIHNPATIAWGDTAEMRKAIEMLA 136

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
            +K  +   Y    G +  ++   +D +  M A +A ++G  D +L  R D+ E  +
Sbjct: 137 SVKDSIINAYEIKTGLSRAKLSHLMDAETWMDAHKAVEFGFADGIL-GRTDLPEDME 192


>gi|294780291|ref|ZP_06745660.1| Clp protease [Enterococcus faecalis PC1.1]
 gi|294452555|gb|EFG20988.1| Clp protease [Enterococcus faecalis PC1.1]
          Length = 239

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 85/177 (48%), Gaps = 8/177 (4%)

Query: 42  ERIVFVTGQIEDHMATL---ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           +R++ ++G I     +    I A+ +    +    +I++ +NSPGG V  G+ IY+ ++ 
Sbjct: 19  KRVLTLSGNIRKKYWSDDDVIDAKSIRETLDGVTDDITIKLNSPGGDVFEGVEIYNYLKD 78

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
               ++    G AAS  + +LSA ++          +++H+ S    G   DI++    +
Sbjct: 79  HPSKVTVEVTGVAASAATFILSAADEA--IMNVGTSVMIHEASTFTWGNKQDIQKTLNAL 136

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
             I   +  IY +  G+T +++E  +  +   +A EA ++G   +V   + + E+ S
Sbjct: 137 ETIDDSILSIYSQKTGQTTDQLETWMKEEKWFTAEEAVEYGFATEV---KKNTEKNS 190


>gi|315033068|gb|EFT45000.1| Clp protease [Enterococcus faecalis TX0017]
          Length = 239

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 85/177 (48%), Gaps = 8/177 (4%)

Query: 42  ERIVFVTGQIEDHMATL---ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           +R++ ++G I     +    I A+ +    +    +I++ +NSPGG V  G+ IY+ ++ 
Sbjct: 19  KRVLTLSGNIRKKYWSDDDVIDAKSIRETLDGVTDDITIKLNSPGGDVFEGVEIYNYLKD 78

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
               ++    G AAS  + +LSA ++          +++H+ S    G   DI++    +
Sbjct: 79  HPSKVTVEVTGVAASAATFILSAADEA--IMNVGTSVMIHEASTFTWGNKQDIQKTLNAL 136

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
             I   +  IY +  G+T +++E  +  +   +A EA ++G   +V   + + E+ S
Sbjct: 137 ETIDDSILSIYSQKTGQTTDQLETWMREEKWFTAEEAVEYGFATEV---KKNTEKNS 190


>gi|187251362|ref|YP_001875844.1| Clp protease [Elusimicrobium minutum Pei191]
 gi|186971522|gb|ACC98507.1| Clp protease [Elusimicrobium minutum Pei191]
          Length = 355

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 55/177 (31%), Positives = 88/177 (49%), Gaps = 9/177 (5%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFL-EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP 101
           R +++T  I    AT I AQ+  + E     + I +Y+N  GG  TA   I D M     
Sbjct: 3   REIYITADISKETATDIVAQIKAMSEGIGANQPIKMYVNCFGGSATAMFTILDAMATCPC 62

Query: 102 PISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQA---SDIERHAQDI 158
            I T  +G+A S  +L+ SAG K  RF   N+R+++H+        A   S IE   ++ 
Sbjct: 63  EIITVNLGEADSAAALIFSAGSK--RFITENSRVMIHEVRLSTLYSAEPLSQIEAELKEF 120

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKT-LDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
             +   + +   KN GK  EE++     +D  +SA EA ++G+ D +L +  +I+EK
Sbjct: 121 QILNDNMFKALAKNTGKKPEEIKADVFGKDLYLSAEEAIEYGLADAILTT--EIKEK 175


>gi|63055020|gb|AAY29048.1| predicted ATP-dependent Clp protease proteolytic subunit 2
           [Bifidobacterium animalis subsp. lactis DSM 10140]
          Length = 160

 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 60/120 (50%), Positives = 87/120 (72%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           +VP   E+T  G ++ + Y+RL  +RI+F+  Q++D  A  I AQLL LE+ +P +++ +
Sbjct: 41  VVPEFTERTPYGMKTQNPYTRLFDDRIIFLGVQVDDTSADDIMAQLLVLESMDPNRDVMM 100

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  +++L+AG KG R  LPNAR+L+
Sbjct: 101 YINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAIILAAGTKGKRLMLPNARVLI 160


>gi|218133443|ref|ZP_03462247.1| hypothetical protein BACPEC_01308 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990818|gb|EEC56824.1| hypothetical protein BACPEC_01308 [Bacteroides pectinophilus ATCC
           43243]
          Length = 271

 Score =  127 bits (320), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 46/173 (26%), Positives = 81/173 (46%), Gaps = 4/173 (2%)

Query: 42  ERIVFVTGQIEDHMA--TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           ER +F+ G I D       +  QL   E       I+++INSPGG V A   IY+ ++  
Sbjct: 20  ERTLFLNGMISDETWYGDEVTPQLFKDELNAGNGNITVWINSPGGDVFAAAQIYNMLRDY 79

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
           K  ++    G AAS  S++  AG+       P A +++H P+    G+  D+++    + 
Sbjct: 80  KGSVTVKIDGIAASAASVIAMAGDTVC--VSPVAMMMIHNPATMAMGETRDMQKAIAMLN 137

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
           ++K  +   Y    G T   +   +D +   +A +A + G  DK+L S  + +
Sbjct: 138 EVKESILNAYEFKTGLTRARLSHMMDDETWFNAKKAVELGFADKILFSSGETD 190


>gi|227519561|ref|ZP_03949610.1| Clp protease [Enterococcus faecalis TX0104]
 gi|312902470|ref|ZP_07761676.1| Clp protease [Enterococcus faecalis TX0635]
 gi|227073010|gb|EEI10973.1| Clp protease [Enterococcus faecalis TX0104]
 gi|310634140|gb|EFQ17423.1| Clp protease [Enterococcus faecalis TX0635]
 gi|315579722|gb|EFU91913.1| Clp protease [Enterococcus faecalis TX0630]
          Length = 239

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 85/177 (48%), Gaps = 8/177 (4%)

Query: 42  ERIVFVTGQIEDHMATL---ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           +R++ ++G I     +    I A+ +    +    +I++ +NSPGG V  G+ IY+ ++ 
Sbjct: 19  KRVLTLSGNIRKKYWSDDDVIDAKSIRETLDGVTDDITIKLNSPGGDVFEGVEIYNYLKD 78

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
               ++    G AAS  + +LSA ++          +++H+ S    G   DI++    +
Sbjct: 79  HPSKVTVEVTGVAASAATFILSAADEA--IMNVGTSVMIHEASTFTWGNKQDIQKTLNAL 136

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
             I   +  IY +  G+T +++E  +  +   +A EA ++G   +V   + + E+ S
Sbjct: 137 ETIDDSILSIYSQKTGQTTDQLETWMREEKWFTAEEAVEYGFATEV---KKNTEKNS 190


>gi|63055018|gb|AAY29047.1| predicted ATP-dependent Clp protease proteolytic subunit 2
           [Bifidobacterium cuniculi]
          Length = 152

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 62/135 (45%), Positives = 91/135 (67%), Gaps = 2/135 (1%)

Query: 3   FEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQ 62
           F   A +  +D +  +VP   E+T  G +  + Y+RL  +RI+F+  Q++D  A  I AQ
Sbjct: 20  FRAAADRMPQDRY--IVPEFEEKTPYGYKRQNPYTRLFDDRIIFMGVQVDDTTADDIMAQ 77

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           LL LE+ +P +++ +YINSPGG +TA  AIYDTM +I+P + T C+GQAAS  ++LL+AG
Sbjct: 78  LLVLESLDPNRDVMMYINSPGGSMTAMTAIYDTMNYIQPDVQTVCLGQAASAAAILLAAG 137

Query: 123 EKGMRFALPNARILL 137
            KG R  LPNAR+L+
Sbjct: 138 TKGKRLILPNARVLI 152


>gi|261418104|ref|YP_003251786.1| peptidase S14 ClpP [Geobacillus sp. Y412MC61]
 gi|319767937|ref|YP_004133438.1| peptidase S14 ClpP [Geobacillus sp. Y412MC52]
 gi|261374561|gb|ACX77304.1| peptidase S14 ClpP [Geobacillus sp. Y412MC61]
 gi|317112803|gb|ADU95295.1| peptidase S14 ClpP [Geobacillus sp. Y412MC52]
          Length = 244

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 67/138 (48%), Gaps = 2/138 (1%)

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           ++   ++I+++I+S GG V A   IY+ ++     ++     +A S  S++  AG++   
Sbjct: 54  SQFKGRDITVWIDSYGGSVFAAAGIYNALKEHDGKVTVKIDSKAMSAASVIAMAGDEV-- 111

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
              P A +++H P     G   D+ + A  +  IK  +   Y    G++  ++ + +D +
Sbjct: 112 LMSPMAVMMIHNPLTAAYGNMHDLRKVADILDTIKESIVNAYALKTGRSRSKISQMMDDE 171

Query: 188 HIMSASEACDWGVVDKVL 205
             MSA+ A   G  D +L
Sbjct: 172 TWMSANVAVKEGFADGIL 189


>gi|167630902|ref|YP_001681401.1| peptidase s14, clpp [Heliobacterium modesticaldum Ice1]
 gi|167593642|gb|ABZ85390.1| peptidase s14, clpp [Heliobacterium modesticaldum Ice1]
          Length = 254

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 78/165 (47%), Gaps = 4/165 (2%)

Query: 43  RIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           R +++ G I  E  +   +  +    E  + + +I+++INSPGG V A   IY+ +   K
Sbjct: 37  RTLYLDGPIAEESWLGDEVTPKQFKSELLSGEGDITIWINSPGGDVFAASQIYNMLMDYK 96

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
             ++    G AAS  S++  AG  G     P + I++H P+    G   ++E+    + +
Sbjct: 97  GKVTVKIDGIAASAASVIAMAG--GDVLMSPVSMIMIHNPATIAIGDTEEMEKAIAMLEE 154

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           IK  +   Y    G +  ++   +D +   +A +A + G  D +L
Sbjct: 155 IKESIINAYELKTGLSRAKISHLMDAESWFNARKAVELGFADGIL 199


>gi|63055012|gb|AAY29044.1| predicted ATP-dependent Clp protease proteolytic subunit 2
           [Bifidobacterium magnum]
          Length = 159

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 62/138 (44%), Positives = 91/138 (65%), Gaps = 1/138 (0%)

Query: 1   MSFEGCAKKDSEDVFLG-LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLI 59
           M F+  A +         +VP   E+T  G +  + Y+RL  +RI+++  Q++D  A  I
Sbjct: 22  MGFQRAADRMPMAPQNRYVVPEFEEKTPYGYKRQNPYTRLFDDRIIWLGVQVDDTSADDI 81

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
            AQLL LE+ +P +++ +YINSPGG +TA  AIYDTMQ+I+P + T C+GQAAS  ++LL
Sbjct: 82  MAQLLVLESLDPNRDVMMYINSPGGSMTAMTAIYDTMQYIQPDVQTVCLGQAASAAAILL 141

Query: 120 SAGEKGMRFALPNARILL 137
           +AG KG R  LPNAR+L+
Sbjct: 142 AAGTKGKRLILPNARVLI 159


>gi|325478747|gb|EGC81858.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 228

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 73/163 (44%), Gaps = 2/163 (1%)

Query: 51  IEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQ 110
            E      I  +L F E +N   +I+++INSPGG   A   IY  +   K  ++    G 
Sbjct: 25  EESWFDDEITPRLFFEELKNKSGDITVWINSPGGDCIAASRIYTMLLEHKGNVTIKIDGL 84

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYV 170
           AAS  S++  AG +      P + +++H P     G + ++++    + ++K  +   Y 
Sbjct: 85  AASAASVIAMAGTEV--LMSPTSLMMIHNPLTVAIGDSKEMQKAIDMLKEVKESIINAYE 142

Query: 171 KNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
              G + EE+   +D +     ++A + G  D  L  +   E+
Sbjct: 143 IKTGLSREEISNLMDGETWFDKNKAIEMGFCDGTLTDKRKDEK 185


>gi|257090835|ref|ZP_05585196.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|256999647|gb|EEU86167.1| conserved hypothetical protein [Enterococcus faecalis CH188]
          Length = 243

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 85/177 (48%), Gaps = 8/177 (4%)

Query: 42  ERIVFVTGQIEDHMATL---ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           +R++ ++G I     +    I A+ +    +    +I++ +NSPGG V  G+ IY+ ++ 
Sbjct: 23  KRVLTLSGNIRKKYWSDDDVIDAKSIRETLDGVTDDITIKLNSPGGDVFEGVEIYNYLKD 82

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
               ++    G AAS  + +LSA ++          +++H+ S    G   DI++    +
Sbjct: 83  HPSKVTVEVTGVAASAATFILSAADEA--IMNVGTSVMIHEASTFTWGNKQDIQKTLNAL 140

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
             I   +  IY +  G+T +++E  +  +   +A EA ++G   +V   + + E+ S
Sbjct: 141 ETIDDSILSIYSQKTGQTTDQLETWMREEKWFTAEEAVEYGFATEV---KKNTEKNS 194


>gi|154504815|ref|ZP_02041553.1| hypothetical protein RUMGNA_02325 [Ruminococcus gnavus ATCC 29149]
 gi|153794698|gb|EDN77118.1| hypothetical protein RUMGNA_02325 [Ruminococcus gnavus ATCC 29149]
          Length = 268

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 4/166 (2%)

Query: 42  ERIVFVTGQIEDHMA--TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           ER +F+ G I D       +  QL   E       I+++INSPGG V A   IY+ ++  
Sbjct: 20  ERTLFLNGMISDETWYGDEVTPQLFKDELNAGNGNITVWINSPGGDVFAAAQIYNMLRDY 79

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
           K  ++    G AAS  S++  AG+       P A +++H P+    G+A D+++    + 
Sbjct: 80  KGSVTVKIDGIAASAASVIAMAGDTVC--VSPVAMMMIHNPATMAMGEAKDMQKAIAMLN 137

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           ++K  +   Y    G T   +   +D +   +A +A + G  DK+L
Sbjct: 138 EVKESILNAYEFKTGLTRARLSHMMDDETWFNAKKAVELGFADKIL 183


>gi|254242214|ref|ZP_04935536.1| hypothetical protein PA2G_02948 [Pseudomonas aeruginosa 2192]
 gi|126195592|gb|EAZ59655.1| hypothetical protein PA2G_02948 [Pseudomonas aeruginosa 2192]
          Length = 696

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 45/147 (30%), Positives = 77/147 (52%), Gaps = 4/147 (2%)

Query: 59  ICAQLL--FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
           I AQ     L+A      ISL ++SPGG V  G AIY+ ++     +  +  G AASM +
Sbjct: 56  ITAQQFARELKALGDLSLISLRVHSPGGDVFEGTAIYNLLKHHPARVEGYVDGLAASMAT 115

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
           ++L + +  +     NA +++H+P G   G+A D+ R+A  + KI+  +   Y+   GK+
Sbjct: 116 VVLMSCD--VIHIPENAMMMVHRPWGIQGGEADDMRRYADLLEKIEGTMVAAYMAKTGKS 173

Query: 177 YEEVEKTLDRDHIMSASEACDWGVVDK 203
            E+++  L  +  M   EA + G  D+
Sbjct: 174 EEDIKALLKAETWMDGREAVEAGFADQ 200


>gi|212292629|gb|ACJ24246.1| hypothetical protein [Dunaliella viridis]
          Length = 204

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 52/125 (41%), Positives = 78/125 (62%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           + P VV      E S D+++ LL++RI+F+ G + D +AT I   LL LEA + +++I +
Sbjct: 78  ITPDVVVGKGEEETSIDLFNYLLRQRIIFIAGYVNDKVATQIVGALLALEAIDEEEDIRI 137

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG   +   + D ++ IKP + T  +G   S  SL+L+AG KG RFA+ N RI++
Sbjct: 138 YINSPGGQPYSVFGVVDAIKSIKPDVQTLGLGACYSYASLILAAGSKGKRFAMKNTRIMM 197

Query: 138 HQPSG 142
            QP G
Sbjct: 198 TQPMG 202


>gi|325662072|ref|ZP_08150691.1| hypothetical protein HMPREF0490_01429 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471735|gb|EGC74954.1| hypothetical protein HMPREF0490_01429 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 275

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 81/178 (45%), Gaps = 5/178 (2%)

Query: 42  ERIVFVTGQIEDHMA--TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           ER + + G I +          Q+   E      +I+++INSPGG   A   IY+ +   
Sbjct: 25  ERTLELYGTIAEESWFDDDFTPQMFKDELNAGSGDITVWINSPGGDCVAAAQIYNMLANY 84

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
           K  ++    G AAS  S++  AG        P + +++H P+    G  +++E+  + + 
Sbjct: 85  KGNVTVKIDGIAASAASVIAMAGSTV--LMSPVSMMMIHNPATFAFGDHAEMEKAIEMLD 142

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS-RIDIEEKSK 216
            +K  +   Y    G +  ++ + +D +  M A++A + G  D ++       +E+SK
Sbjct: 143 GVKDSIINAYTLKTGMSRAKLSRLMDAETWMDATKAVELGFADNIITKNEFPKKEESK 200


>gi|313896528|ref|ZP_07830079.1| endopeptidase Clp [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312974952|gb|EFR40416.1| endopeptidase Clp [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 229

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/172 (25%), Positives = 75/172 (43%), Gaps = 4/172 (2%)

Query: 41  KERIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           ++RI+ + G+I  E      I  Q+   E    + +I L+INSPGG   A   IY+ +  
Sbjct: 14  EKRILLLDGEISDETWWGDEITPQMFRSELNAAEGDIDLWINSPGGDCYAAAQIYNMLME 73

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
            K  ++    G AAS  S    A         P   +++H P     G   ++ER    +
Sbjct: 74  YKGNVAVKIDGIAASAASA--VAMAGSNVEISPLGMLMIHNPMTVSIGDTHEMERTITFL 131

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
            +IK  +   Y    G +  ++ + +D +  M+A +A + G  D VL    +
Sbjct: 132 SEIKESIINAYELKTGLSRAKISRLMDAETWMNAKKAVELGFADSVLYENRE 183


>gi|323129300|gb|ADX16730.1| bacteriophage Clp protease involved in capsid processing
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 4/74]
          Length = 709

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 55/210 (26%), Positives = 93/210 (44%), Gaps = 11/210 (5%)

Query: 3   FEGCAKKDSEDVFLGLVPMVVEQTNRGE----RSYDIYSRLLKERIVFVTGQIEDHMATL 58
               ++  +    + + P++     RGE      Y I +       V +  +I       
Sbjct: 11  NRIMSEVKTTVAAIKMPPVMTAGNGRGEGSSNSWYSIRAAANNTAEVRIYDEIGGW---G 67

Query: 59  ICAQLL--FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
           I A+     L A      I+L+I+SPGG V  G+AIY+ ++      + +  G A SM S
Sbjct: 68  ISARWFAEELAALGQINRINLHIHSPGGAVLDGIAIYNLLKNHPAQKTVYIDGMACSMAS 127

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +   G         NA +++H+P G   G+A DI  +A  + KI+  +  IY +  GKT
Sbjct: 128 AIAMVGNPI--IMPENAMMMIHKPRGVAGGEAEDIREYADLLDKIESVIIPIYTEKTGKT 185

Query: 177 YEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
            E++   L ++  MS +E    G  DK++ 
Sbjct: 186 PEDIAAMLAKETWMSGAECVSEGFADKLIQ 215


>gi|224584460|ref|YP_002638258.1| Clp protease-like protein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224468987|gb|ACN46817.1| Clp protease-like protein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 684

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 55/195 (28%), Positives = 89/195 (45%), Gaps = 11/195 (5%)

Query: 18  LVPMVVEQTNRGE----RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLL--FLEAENP 71
           + P++     RGE      Y I +       V +  +I       I A+     L A   
Sbjct: 1   MPPVMTAGNGRGEGSSNSWYSIRAAANNTAEVRIYDEIGGW---GISARWFAEELAALGQ 57

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
              I+L+I+SPGG V  G+AIY+ ++      + +  G A SM S +   G         
Sbjct: 58  INRINLHIHSPGGAVLDGIAIYNLLKNHPAQKTVYIDGMACSMASAIAMVGNPI--IMPE 115

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           NA +++H+P G   G+A DI  +A  + KI+  +  IY +  GKT E++   L ++  MS
Sbjct: 116 NAMMMIHKPRGVAGGEAEDIREYADLLDKIESVIIPIYTEKTGKTPEDIAAMLAKETWMS 175

Query: 192 ASEACDWGVVDKVLM 206
            +E    G  DK++ 
Sbjct: 176 GAECVSEGFADKLIQ 190


>gi|169257302|ref|YP_001700678.1| bacteriophage Clp protease involved in capsid processing [Phage
           Gifsy-2]
          Length = 696

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 55/207 (26%), Positives = 92/207 (44%), Gaps = 11/207 (5%)

Query: 6   CAKKDSEDVFLGLVPMVVEQTNRGE----RSYDIYSRLLKERIVFVTGQIEDHMATLICA 61
             +  +    + + P++     RGE      Y I +       V +  +I       I A
Sbjct: 1   MPEVKTTVAAIKMPPVMTAGNGRGEGSSNSWYSIRAAANNTAEVRIYDEIGGW---GISA 57

Query: 62  QLL--FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
           +     L A      I+L+I+SPGG V  G+AIY+ ++      + +  G A SM S + 
Sbjct: 58  RWFAEELAALGQINRINLHIHSPGGAVLDGIAIYNLLKNHPAQKTVYIDGMACSMASAIA 117

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
             G         NA +++H+P G   G+A DI  +A  + KI+  +  IY +  GKT E+
Sbjct: 118 MVGNPI--IMPENAMMMIHKPRGVAGGEAEDIREYADLLDKIESVIIPIYTEKTGKTPED 175

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVLM 206
           +   L ++  MS +E    G  DK++ 
Sbjct: 176 IAAMLAKETWMSGAECVSEGFADKLIQ 202


>gi|205352451|ref|YP_002226252.1| ATP dependent Clp protease [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205272232|emb|CAR37094.1| ATP Dependent clp Protease [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326627504|gb|EGE33847.1| ATP Dependent clp Protease [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 709

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 55/210 (26%), Positives = 92/210 (43%), Gaps = 11/210 (5%)

Query: 3   FEGCAKKDSEDVFLGLVPMVVEQTNRGE----RSYDIYSRLLKERIVFVTGQIEDHMATL 58
                +  +    + + P++     RGE      Y I +       V +  +I       
Sbjct: 11  NRIMPEVKTTVAAIKMPPVMTAGNGRGEGSSNSWYSIRAAANNTAEVRIYDEIGGW---G 67

Query: 59  ICAQLL--FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
           I A+     L A      I+L+I+SPGG V  G+AIY+ ++      + +  G A SM S
Sbjct: 68  ISARWFAEELAALGQINRINLHIHSPGGAVLDGIAIYNLLKNHPAQKTVYIDGMACSMAS 127

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +   G         NA +++H+P G   G+A DI  +A  + KI+  +  IY +  GKT
Sbjct: 128 AIAMVGNPI--IMPENAMMMIHKPRGVAGGEAEDIREYADLLDKIESVIIPIYTEKTGKT 185

Query: 177 YEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
            E++   L ++  MS +E    G  DK++ 
Sbjct: 186 PEDIAAMLAKETWMSGAECVSEGFADKLIQ 215


>gi|168243819|ref|ZP_02668751.1| Clp protease domain protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194448205|ref|YP_002045037.1| ATP-dependent protease [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194406509|gb|ACF66728.1| ATP-dependent protease [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|205337092|gb|EDZ23856.1| Clp protease domain protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 683

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 45/141 (31%), Positives = 72/141 (51%), Gaps = 2/141 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+I+SPGG V  G+AIY+ ++      + +  G A SM S +   G   
Sbjct: 52  LAALGQINRINLHIHSPGGAVLDGIAIYNLLKNHPAQKTVYIDGMACSMASAIAMVGNPI 111

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 NA +++H+P G   G+A DI  +A  + KI+  +  IY +  GKT E++   L 
Sbjct: 112 --IMPENAMMMIHKPRGVAGGEAEDIREYADLLDKIESVIIPIYTEKTGKTPEDIAAMLA 169

Query: 186 RDHIMSASEACDWGVVDKVLM 206
           ++  MS +E    G  DK++ 
Sbjct: 170 KETWMSGAECVSEGFADKLIQ 190


>gi|167993401|ref|ZP_02574495.1| Clp protease domain protein [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|194443858|ref|YP_002040235.1| ATP-dependent protease [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|198242377|ref|YP_002215244.1| ATP-dependent protease [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|194402521|gb|ACF62743.1| ATP-dependent protease [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|197936893|gb|ACH74226.1| ATP-dependent protease [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|205328541|gb|EDZ15305.1| Clp protease domain protein [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|261246251|emb|CBG24056.1| Clp-like protease [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|312912023|dbj|BAJ35997.1| ATP-dependent Clp protease [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321223646|gb|EFX48709.1| Prophage Clp protease-like protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|326622990|gb|EGE29335.1| Clp protease-like protein [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 684

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 55/195 (28%), Positives = 89/195 (45%), Gaps = 11/195 (5%)

Query: 18  LVPMVVEQTNRGE----RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLL--FLEAENP 71
           + P++     RGE      Y I +       V +  +I       I A+     L A   
Sbjct: 1   MPPVMTAGNGRGEGSSNSWYSIRAAANNTAEVRIYDEIGGW---GISARWFAEELAALGQ 57

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
              I+L+I+SPGG V  G+AIY+ ++      + +  G A SM S +   G         
Sbjct: 58  INRINLHIHSPGGAVLDGIAIYNLLKNHPAQKTVYIDGMACSMASAIAMVGNPI--IMPE 115

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           NA +++H+P G   G+A DI  +A  + KI+  +  IY +  GKT E++   L ++  MS
Sbjct: 116 NAMMMIHKPRGVAGGEAEDIREYADLLDKIESVIIPIYTEKTGKTPEDIAAMLAKETWMS 175

Query: 192 ASEACDWGVVDKVLM 206
            +E    G  DK++ 
Sbjct: 176 GAECVSEGFADKLIQ 190


>gi|16764393|ref|NP_460008.1| Clp protease-like protein [Phage Gifsy-2]
 gi|16419547|gb|AAL19967.1| Gifsy-2 prophage Clp protease-like protein [Phage Gifsy-2]
 gi|267992782|gb|ACY87667.1| Clp protease-like protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301157578|emb|CBW17068.1| ATP Dependent clp Protease [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
          Length = 693

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 55/195 (28%), Positives = 89/195 (45%), Gaps = 11/195 (5%)

Query: 18  LVPMVVEQTNRGE----RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLL--FLEAENP 71
           + P++     RGE      Y I +       V +  +I       I A+     L A   
Sbjct: 10  MPPVMTAGNGRGEGSSNSWYSIRAAANNTAEVRIYDEIGGW---GISARWFAEELAALGQ 66

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
              I+L+I+SPGG V  G+AIY+ ++      + +  G A SM S +   G         
Sbjct: 67  INRINLHIHSPGGAVLDGIAIYNLLKNHPAQKTVYIDGMACSMASAIAMVGNPI--IMPE 124

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           NA +++H+P G   G+A DI  +A  + KI+  +  IY +  GKT E++   L ++  MS
Sbjct: 125 NAMMMIHKPRGVAGGEAEDIREYADLLDKIESVIIPIYTEKTGKTPEDIAAMLAKETWMS 184

Query: 192 ASEACDWGVVDKVLM 206
            +E    G  DK++ 
Sbjct: 185 GAECVSEGFADKLIQ 199


>gi|294788380|ref|ZP_06753623.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP
           [Simonsiella muelleri ATCC 29453]
 gi|294483811|gb|EFG31495.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP
           [Simonsiella muelleri ATCC 29453]
          Length = 277

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 79/170 (46%), Gaps = 2/170 (1%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPI 103
           ++ + G + D  +          E    + +I++ INSPGG    G+AIY+ ++     I
Sbjct: 42  VLLLYGVVGDDWSDTPVTPQAVAEFLKGKGDITVSINSPGGNYFDGIAIYNLLRAHPHKI 101

Query: 104 STFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKR 163
           +   +G AAS  S++  AG+         A +++H   G   G  +D+    + + ++  
Sbjct: 102 TVQVIGDAASAASVIAMAGD--NILMGEGAFMMIHNCWGVVVGNRADLAESIELMEQLDN 159

Query: 164 RLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
            + ++YV   GK   E+   +D +  ++A EA + G+    L ++ D + 
Sbjct: 160 AMTKLYVAQSGKDEAEIAAMMDAETWLNADEAVECGLATGHLHTKADKQP 209


>gi|304439217|ref|ZP_07399135.1| ATP-dependent Clp protease proteolytic subunit [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304372349|gb|EFM25937.1| ATP-dependent Clp protease proteolytic subunit [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 235

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 77/172 (44%), Gaps = 5/172 (2%)

Query: 41  KERIVFVTG--QIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
            E ++++ G    +      +  +L   E +N   +I+++INSPGG   A   IY  +  
Sbjct: 20  NENVLYIDGVIAEDSWFDDDVTPKLFASELKNKSGDITVWINSPGGDCIAASRIYTMLLE 79

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
            K  ++    G AAS  S++  AG +      P + I++H P     G + ++++    +
Sbjct: 80  HKGNVTIKIDGLAASAASVIAMAGTEV--LMSPTSLIMIHNPLTVAIGDSKEMQKAIDML 137

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK-VLMSRI 209
            ++K  +   Y    G + EE+   +D +     ++A + G  D  ++  R 
Sbjct: 138 KEVKESIINAYEIKTGLSREEISNLMDGETWFDKNKAIEMGFCDGTLIDKRT 189


>gi|32128420|ref|NP_858955.1| protease of the ClpP family [Xanthomonas phage Xp10]
 gi|31788483|gb|AAP58675.1| 8R [Xanthomonas phage Xp10]
          Length = 245

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 43/176 (24%), Positives = 87/176 (49%), Gaps = 12/176 (6%)

Query: 31  RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGM 90
           R  +I+S + ++   F  G    H+A+ +         E    +I++ I+SPGG + AG+
Sbjct: 41  RELNIFSVIGED--FFGEGTTSAHIASFL--------NEIGPGDITVNIDSPGGDMFAGL 90

Query: 91  AIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASD 150
           AIY+ +   K  ++   +G+AAS  S++  AG++      P+A I++H       G + +
Sbjct: 91  AIYNLLLAHKGRVTVNVIGRAASAASVIAMAGDQIN--MHPSAFIMIHNCHLVVGGNSKE 148

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           +   ++ +      + +IYV   G + + + + +D +  MSA E+   G  D ++ 
Sbjct: 149 LAEVSEMMKPFDSAMADIYVARTGMSKDTIVQMMDAETWMSAEESVKLGFADSIVT 204


>gi|331090181|ref|ZP_08339069.1| hypothetical protein HMPREF1025_02652 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330402127|gb|EGG81699.1| hypothetical protein HMPREF1025_02652 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 229

 Score =  125 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 45/177 (25%), Positives = 81/177 (45%), Gaps = 5/177 (2%)

Query: 42  ERIVFVTGQIEDHMA--TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           ER +F+ G I +       I  QL   E      +I+++INSPGG   A   IY+ +   
Sbjct: 2   ERTLFLNGTIAEESWFDDDITPQLFKEELMAGSGDITVWINSPGGDCVAAAQIYNMLMDY 61

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
           K  ++    G AAS  S++  AG K      P + +++H P     G  +++++  + + 
Sbjct: 62  KGNVTVKIDGIAASAASVIAMAGTKV--LVSPVSMMMIHNPMTVAMGDTAEMQKAIEMLG 119

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
            +K  +   Y    G +   +   +D +  M A +A + G  D+VL  R ++ E  +
Sbjct: 120 SVKDSIINAYEIKTGLSRTRLSHLMDAETWMDAGKAVELGFADEVL-KRSEVPEDME 175


>gi|189463031|ref|ZP_03011816.1| hypothetical protein BACCOP_03733 [Bacteroides coprocola DSM 17136]
 gi|198276521|ref|ZP_03209052.1| hypothetical protein BACPLE_02716 [Bacteroides plebeius DSM 17135]
 gi|237708586|ref|ZP_04539067.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|260642222|ref|ZP_05414941.2| putative prophage L54a, Clp protease [Bacteroides finegoldii DSM
           17565]
 gi|189430313|gb|EDU99297.1| hypothetical protein BACCOP_03733 [Bacteroides coprocola DSM 17136]
 gi|198270609|gb|EDY94879.1| hypothetical protein BACPLE_02716 [Bacteroides plebeius DSM 17135]
 gi|229457515|gb|EEO63236.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|260623181|gb|EEX46052.1| putative prophage L54a, Clp protease [Bacteroides finegoldii DSM
           17565]
          Length = 368

 Score =  125 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 9/166 (5%)

Query: 44  IVFVTGQIED--HMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP 101
            +F+ G I D   + +   AQ L  EAE   + I + INS GG V +G+AI++ ++  + 
Sbjct: 38  TIFLYGDIGDYTEVQSGRIAQELM-EAERVSRRIHVRINSNGGEVYSGIAIFNALRHSQA 96

Query: 102 PISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKI 161
            I  +  G AASM S++   G+         AR++LH  SGG  G   D++R  ++I  +
Sbjct: 97  DIRIYVDGIAASMASVIALCGKPVE--MSKYARLMLHSVSGGCYGNKQDLQRCMEEIESL 154

Query: 162 KRRLNEIYVKNCGKTYEEVEK---TLDRDHIMSASEACDWGVVDKV 204
           +  L+EIY +  G + EEV++     + DH ++A EA D G +D +
Sbjct: 155 EGSLSEIYAERLGMSKEEVKQTYFDGE-DHWLTAKEALDLGFIDDI 199


>gi|302876770|ref|YP_003845403.1| peptidase S14 ClpP [Clostridium cellulovorans 743B]
 gi|302579627|gb|ADL53639.1| peptidase S14 ClpP [Clostridium cellulovorans 743B]
          Length = 257

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 80/168 (47%), Gaps = 4/168 (2%)

Query: 42  ERIVFVTGQIEDHMA--TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           ER +F+ G I +       +  QL   E    + +I+++INSPGG   A   IY+ +   
Sbjct: 19  ERTLFLNGTIAEESWFDDDVTPQLFKDELNAGEGDITVWINSPGGDCVAAAQIYNMLSNY 78

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
           K  ++    G AAS  S++  AG++      P + +++H P     G  +++++    + 
Sbjct: 79  KGKVTVKIDGIAASAASVIAMAGKEV--LMSPVSMLMIHNPMTIAMGDHAEMQKAIDMLA 136

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           ++K  +   YV   G +  ++   +D +  M+A++A + G  D  L  
Sbjct: 137 EVKESIINAYVLKTGLSRAKLSHLMDSETWMNANKAVELGFADGTLTR 184


>gi|32364338|gb|AAP80272.1| ATP-dependent Clp protease proteolytic subunit [Malus x domestica]
          Length = 120

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 42/113 (37%), Positives = 67/113 (59%), Gaps = 1/113 (0%)

Query: 105 TFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRR 164
           T C+G A ++ + LL+AGEKG RFA+P +RI L  P+G   GQA DI+  A ++++I+  
Sbjct: 1   THCVGYAYNLAAFLLTAGEKGNRFAMPLSRIALQSPAGAARGQADDIQNEANELLRIRDY 60

Query: 165 LNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM-SRIDIEEKSK 216
           L        G+  E++ K L R    +A EA ++G++D+V+   RI  +   K
Sbjct: 61  LFNELAMKTGQPVEKINKDLSRMKRFNAQEALEYGLIDRVVRPPRIKADAPPK 113


>gi|148747731|ref|YP_001285810.1| putative Clp peptidase [Geobacillus virus E2]
 gi|113715673|gb|ABI36822.1| putative Clp peptidase [Geobacillus virus E2]
          Length = 243

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 67/143 (46%), Gaps = 2/143 (1%)

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           ++   K+I+++I+S GG V A   IY+ ++     I+     +A S  S++  AG++   
Sbjct: 55  SQYKGKDITVWIDSYGGSVFAAAGIYNALKEHNGKITVKIDSKAMSAASVIAMAGDEV-- 112

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
              P A +++H P     G   D+ + A  +  IK  +   Y    G++  ++ + +D +
Sbjct: 113 LMSPMAVMMIHNPLTAAYGNMHDLRKAADILDTIKESIVNAYALKTGRSRSKISQMMDDE 172

Query: 188 HIMSASEACDWGVVDKVLMSRID 210
             MSA+ A   G  D +L     
Sbjct: 173 TWMSANVAVKEGFADGILYQEDK 195


>gi|152999295|ref|YP_001364976.1| peptidase S14 ClpP [Shewanella baltica OS185]
 gi|151363913|gb|ABS06913.1| peptidase S14 ClpP [Shewanella baltica OS185]
          Length = 671

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 4/145 (2%)

Query: 59  ICAQLL--FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
           I AQ     L+A      I+  I+SPGG V  GMAIY+ ++        +  G AASM S
Sbjct: 39  ISAQQFARDLQALGKVGTITARIHSPGGDVFEGMAIYNMIKGHPAHKVCYIDGLAASMAS 98

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
           ++  A ++       NA +++H+P GG  G A D+ ++A  + K++  L   Y    G +
Sbjct: 99  VIAMAFDEV--IMPENAMMMVHKPWGGTLGDAEDMRKYADLLDKVEGNLVGAYQHKTGLS 156

Query: 177 YEEVEKTLDRDHIMSASEACDWGVV 201
            +E+   L  +  ++  EA + G  
Sbjct: 157 EDELHALLAAETWLTGREAVEKGFA 181


>gi|50914485|ref|YP_060457.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes MGAS10394]
 gi|40218571|gb|AAR83225.1| phage portal protein [Streptococcus pyogenes]
 gi|50261616|gb|AAT72384.1| protease [Streptococcus pyogenes]
 gi|50903559|gb|AAT87274.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes MGAS10394]
          Length = 228

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 45/177 (25%), Positives = 86/177 (48%), Gaps = 4/177 (2%)

Query: 42  ERIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           ER +F+ G I  E      +  QL   E  + Q +I+L+INSPGG V A   IY+ +   
Sbjct: 13  ERTLFLNGVIASESWFGDEVTPQLFKDELLSEQGDITLWINSPGGDVFAAAQIYNMLMDY 72

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
           K  ++    G AAS  S++  AG        P + +++H P+   SG   ++E+  Q + 
Sbjct: 73  KGAVTVNIDGIAASAASVIAMAGTIVN--MSPVSMMMIHNPATFASGDKREMEKAIQLLN 130

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           ++K  +   Y      + +++   +D +  ++A +A + G  D+++       ++S+
Sbjct: 131 EVKESIINAYEIKTSLSRQKLSNLMDGETWLNAKKAVELGFADQIIFDGTHDNDESQ 187


>gi|324999707|ref|ZP_08120819.1| ATP-dependent Clp protease proteolytic subunit [Pseudonocardia sp.
           P1]
          Length = 185

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 94/178 (52%), Gaps = 13/178 (7%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+  RLL ERIV ++ +++D +A   C +LL L AE+P+++++L + SPGG   A  A++
Sbjct: 9   DLADRLLGERIVLLSRELDDDVAAETCGRLLLLAAEDPRRDVTLQVLSPGGSPVAAAAVH 68

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS---- 149
           DT++ +   + T   G  A     L++AG  G RFALP+A   +  P    +GQA     
Sbjct: 69  DTIRALGVDVVTVANGSLAGPAPFLVAAGTPGKRFALPHASFRIPDPED--TGQAPVRGA 126

Query: 150 ---DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
              D+   A  + + +  ++ +  + CG +         R+  ++A +A   G+VD V
Sbjct: 127 HPGDVRVRADHLARRRAEIDALTERYCGGSL---PGD-ARERWLTAGDAAAAGLVDHV 180


>gi|160873909|ref|YP_001553225.1| peptidase S14 ClpP [Shewanella baltica OS195]
 gi|160859431|gb|ABX47965.1| peptidase S14 ClpP [Shewanella baltica OS195]
 gi|315266141|gb|ADT92994.1| peptidase S14 ClpP [Shewanella baltica OS678]
          Length = 668

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 4/145 (2%)

Query: 59  ICAQLL--FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
           I AQ     L+A      I+  I+SPGG V  GMAIY+ ++        +  G AASM S
Sbjct: 39  ISAQQFARDLQALGKVGTITARIHSPGGDVFEGMAIYNMIKGHPAHKVCYIDGLAASMAS 98

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
           ++  A ++       NA +++H+P GG  G A D+ ++A  + K++  L   Y    G +
Sbjct: 99  VIAMAFDEV--IMPENAMMMVHKPWGGTLGDAEDMRKYADLLDKVEGNLVSAYQHKTGLS 156

Query: 177 YEEVEKTLDRDHIMSASEACDWGVV 201
            +E+   L  +  ++  EA + G  
Sbjct: 157 EDELHALLAAETWLTGREAVEKGFA 181


>gi|296085709|emb|CBI29508.3| unnamed protein product [Vitis vinifera]
          Length = 169

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 8/148 (5%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
              + NS      + +AI    +++K  I T C+G      +LLL AG KG R ALP++ 
Sbjct: 10  CIFWSNSLLLFPISDLAIIFCCRYVKSLIFTLCVGNPWGEAALLLVAGAKGNRSALPSST 69

Query: 135 ILLHQ--------PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           I+L Q        P     GQA+DI+   +++  +K  L ++Y K+ GK+ E++E  + R
Sbjct: 70  IMLKQSCPPINLHPIARLQGQATDIDLARKEVKNVKAELVKLYAKHVGKSPEQIEADIRR 129

Query: 187 DHIMSASEACDWGVVDKVLMSRIDIEEK 214
               S SE  ++ ++DKVL +    E++
Sbjct: 130 PKYFSPSEGVEYSIIDKVLYNERSSEDR 157


>gi|295402312|ref|ZP_06812267.1| peptidase S14 ClpP [Geobacillus thermoglucosidasius C56-YS93]
 gi|294975585|gb|EFG51208.1| peptidase S14 ClpP [Geobacillus thermoglucosidasius C56-YS93]
          Length = 242

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 70/145 (48%), Gaps = 2/145 (1%)

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           ++   K+I+++I+S GG V A   IY+ ++     I+     +A S  S++  AG++   
Sbjct: 54  SQFKGKDITVWIDSYGGSVFAAAGIYNALKEHDGRITVKIDSKAMSAASVIAMAGDEV-- 111

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
              P A +++H P     G   D+ + A  +  +K  L   YV   G++  ++ + +D +
Sbjct: 112 LMSPMAVMMIHNPLTAAYGNMHDLRKIADILDTVKESLINAYVLKTGRSRSKISQMMDDE 171

Query: 188 HIMSASEACDWGVVDKVLMSRIDIE 212
             MSA+ A   G  D +L    + E
Sbjct: 172 TWMSANVAVKEGFADGILYQDNNPE 196


>gi|170723514|ref|YP_001751202.1| peptidase S14 ClpP [Pseudomonas putida W619]
 gi|169761517|gb|ACA74833.1| peptidase S14 ClpP [Pseudomonas putida W619]
          Length = 620

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 7/143 (4%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
            I++ INSPGG VT  +AIY  ++     ++    G  AS  +L+  A ++       ++
Sbjct: 26  PITVQINSPGGSVTDALAIYTVLRKHTGRVTAIVDGLCASAATLVALAADEI--VMAEHS 83

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H P    SG A ++ + A  +    R +  +Y +  G + E++   +  +   ++ 
Sbjct: 84  LMMVHNPWTVASGDADEMRKTADTLDVASREMTALYTERTGLSAEKITAIMGAETWFNSY 143

Query: 194 EACDWGVVDKVLMSRIDIEEKSK 216
           EA D G        R+D  E+SK
Sbjct: 144 EAVDAGFA-----HRVDNSERSK 161


>gi|297587079|ref|ZP_06945724.1| peptidase S14, ClpP [Finegoldia magna ATCC 53516]
 gi|297575060|gb|EFH93779.1| peptidase S14, ClpP [Finegoldia magna ATCC 53516]
          Length = 228

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 73/163 (44%), Gaps = 2/163 (1%)

Query: 51  IEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQ 110
            E      I  +L F E +N   +I+++INSPGG   A   IY  +   K  ++    G 
Sbjct: 25  EESWFDDEITPRLFFEELKNKSGDITVWINSPGGDCIAASRIYTMLLEHKGNVAIKIDGL 84

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYV 170
           AAS  S++  AG +      P + +++H P     G + ++++    + ++K  +   Y 
Sbjct: 85  AASAASVIAMAGTEV--LMSPTSLMMIHNPLTVAIGDSKEMQKAMDMLKEVKESIINAYE 142

Query: 171 KNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
              G + EE+   +D +     ++A + G  D  L  +   E+
Sbjct: 143 IKTGLSREEISNLMDGETWFDKNKAIEMGFCDGTLTDKRKDEK 185


>gi|163119655|ref|YP_080707.2| ATP-dependent protease proteolytic subunit [Bacillus licheniformis
           ATCC 14580]
 gi|145903165|gb|AAU25069.2| ATP-dependent protease proteolytic subunit (class III heat-shock
           protein) [Bacillus licheniformis ATCC 14580]
          Length = 230

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 45/145 (31%), Positives = 76/145 (52%), Gaps = 4/145 (2%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L++      I LYINSPGG V  G AI+  +Q  K  I+ +    A S+ S++  AG+K 
Sbjct: 35  LKSLGDVSSIDLYINSPGGDVFEGQAIHSMLQRHKAKINVYVDALAGSIASVIAMAGDKI 94

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYE--EVEKT 183
                 NA +++H P  G  G A++  + A D+ KI   +   Y+   G   +   + + 
Sbjct: 95  T--MPSNAMMMIHNPYMGMVGNAAEFRKAADDLDKITESIVSTYLAKAGDKLDDGTLRQL 152

Query: 184 LDRDHIMSASEACDWGVVDKVLMSR 208
           LD +  ++A EA ++G++D+V  S+
Sbjct: 153 LDEETWLTADEALNYGLIDEVSESK 177


>gi|126175793|ref|YP_001051942.1| peptidase S14 ClpP [Shewanella baltica OS155]
 gi|125998998|gb|ABN63073.1| peptidase S14, ClpP [Shewanella baltica OS155]
          Length = 640

 Score =  124 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 4/145 (2%)

Query: 59  ICAQLL--FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
           I AQ     L+A      I+  I+SPGG V  GMAIY+ ++        +  G AASM S
Sbjct: 11  ISAQQFARDLQALGKVGTITARIHSPGGDVFEGMAIYNMIKGHPAHKVCYIDGLAASMAS 70

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
           ++  A ++       NA +++H+P GG  G A D+ ++A  + K++  L   Y    G +
Sbjct: 71  VIAMAFDEV--IMPENAMMMVHKPWGGTLGDAEDMRKYADLLDKVEGNLVGAYQHKTGLS 128

Query: 177 YEEVEKTLDRDHIMSASEACDWGVV 201
            +E+   L  +  ++  EA + G  
Sbjct: 129 EDELHALLAAETWLTGREAVEKGFA 153


>gi|52787302|ref|YP_093131.1| hypothetical protein BLi03615 [Bacillus licheniformis ATCC 14580]
 gi|52349804|gb|AAU42438.1| ClpP [Bacillus licheniformis ATCC 14580]
          Length = 243

 Score =  124 bits (313), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 45/145 (31%), Positives = 76/145 (52%), Gaps = 4/145 (2%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L++      I LYINSPGG V  G AI+  +Q  K  I+ +    A S+ S++  AG+K 
Sbjct: 48  LKSLGDVSSIDLYINSPGGDVFEGQAIHSMLQRHKAKINVYVDALAGSIASVIAMAGDKI 107

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYE--EVEKT 183
                 NA +++H P  G  G A++  + A D+ KI   +   Y+   G   +   + + 
Sbjct: 108 T--MPSNAMMMIHNPYMGMVGNAAEFRKAADDLDKITESIVSTYLAKAGDKLDDGTLRQL 165

Query: 184 LDRDHIMSASEACDWGVVDKVLMSR 208
           LD +  ++A EA ++G++D+V  S+
Sbjct: 166 LDEETWLTADEALNYGLIDEVSESK 190


>gi|63055006|gb|AAY29041.1| predicted ATP-dependent Clp protease proteolytic subunit 2
           [Bifidobacterium dentium]
          Length = 160

 Score =  124 bits (313), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 62/127 (48%), Positives = 91/127 (71%), Gaps = 2/127 (1%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
            +D +  ++P   E+T  G +  D Y+RL ++RI+F+  Q++D  A  I AQLL LE+++
Sbjct: 36  PQDRY--VLPQFEEKTPYGFKRQDPYTRLFEDRIIFMGVQVDDTSADDIMAQLLVLESQD 93

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
           P +++ +YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL+AG KG R  L
Sbjct: 94  PNRDVMMYINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLAAGAKGKRLML 153

Query: 131 PNARILL 137
           PNAR+L+
Sbjct: 154 PNARVLI 160


>gi|115351925|ref|YP_773764.1| peptidase S14, ClpP [Burkholderia ambifaria AMMD]
 gi|115281913|gb|ABI87430.1| peptidase S14, ClpP [Burkholderia ambifaria AMMD]
          Length = 361

 Score =  124 bits (313), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 10/182 (5%)

Query: 28  RGERSYDIYSRL-----LKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSP 82
           R  + +DI ++      ++ RI    G      A     QL    A      I + INS 
Sbjct: 3   RNHKWWDIRAQANAAGEVEIRIYNEIGFWGTD-AQTFVTQL--DAAAANASTIVVAINSM 59

Query: 83  GGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSG 142
           GG V    AIY+ ++     +     G AAS  SL+  AG++       NA +++H    
Sbjct: 60  GGDVFDAFAIYNALRRHAGKVKVRVDGVAASAASLIAMAGDEI--VMPENALLMIHNAHT 117

Query: 143 GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
             +G+A D+ R A  +      +   Y    G++ +E+   +D +  ++A++A + G  D
Sbjct: 118 VTAGEAKDLRRIADLLDNAGDGILAAYAAKSGQSIDEIRGMMDAETWLTAAQAKEKGFCD 177

Query: 203 KV 204
            +
Sbjct: 178 TI 179


>gi|298386342|ref|ZP_06995898.1| protease [Bacteroides sp. 1_1_14]
 gi|298260719|gb|EFI03587.1| protease [Bacteroides sp. 1_1_14]
          Length = 358

 Score =  124 bits (313), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 80/158 (50%), Gaps = 5/158 (3%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM 108
           G  + ++ +   A+ L LEAE     I + INS GG V AG+AI++ ++  K  I+ +  
Sbjct: 37  GDYDGNVRSGDIAREL-LEAEALSGRIDVRINSNGGEVYAGIAIFNALKNSKADITIYVD 95

Query: 109 GQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           G AASM S++   G+         AR++LH   GG  G   ++    ++I  ++  L E+
Sbjct: 96  GIAASMASVIALCGKPVQ--MSRYARLMLHSVQGGCYGNKEEMRGCIREIESLEDTLCEM 153

Query: 169 YVKNCGKTYEEVEKTL--DRDHIMSASEACDWGVVDKV 204
           Y    GK  EE+       +DH + A EA   G++D +
Sbjct: 154 YAARMGKDKEEIRSLYFDGKDHWLRADEALALGLIDGI 191


>gi|63055016|gb|AAY29046.1| predicted ATP-dependent Clp protease proteolytic subunit 2
           [Bifidobacterium adolescentis]
          Length = 160

 Score =  124 bits (313), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 61/120 (50%), Positives = 88/120 (73%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           ++P   E+T  G +  D Y+RL ++RI+F+  Q++D  A  I AQLL LE+++P +++ +
Sbjct: 41  VLPQFEEKTPYGYKRQDPYTRLFEDRIIFMGVQVDDTSADDIMAQLLVLESQDPNRDVMM 100

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL+AG KG R  LPNAR+L+
Sbjct: 101 YINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLAAGAKGKRLMLPNARVLI 160


>gi|265750850|ref|ZP_06086913.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|315921429|ref|ZP_07917669.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|263237746|gb|EEZ23196.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|313695304|gb|EFS32139.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 339

 Score =  124 bits (312), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 84/158 (53%), Gaps = 5/158 (3%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM 108
           G+ +D++ +   A+ L LEAE    ++ + INS GG V +G+AI++ ++  K  I+ +  
Sbjct: 17  GEYDDNVRSGDIAREL-LEAEALTGKVDVRINSNGGEVYSGIAIFNALKNSKADITIYVD 75

Query: 109 GQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           G AASM S++   G+         AR++LH   GG  G   +++   ++I  ++  L E+
Sbjct: 76  GIAASMASVIALCGKPVQ--MSRYARLMLHSVQGGCYGNKDEMKDCIREIEALEDTLCEM 133

Query: 169 YVKNCGKTYEEVEKTL--DRDHIMSASEACDWGVVDKV 204
           Y    GK  EE+       +DH + A EA   G++D +
Sbjct: 134 YATRMGKDKEEIRAMYFDGKDHWLRADEALALGLIDGI 171


>gi|217971973|ref|YP_002356724.1| peptidase S14 ClpP [Shewanella baltica OS223]
 gi|217497108|gb|ACK45301.1| peptidase S14 ClpP [Shewanella baltica OS223]
          Length = 669

 Score =  124 bits (312), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 4/145 (2%)

Query: 59  ICAQLL--FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
           I AQ     L+A      I+  I+SPGG V  GMAIY+ ++        +  G AASM S
Sbjct: 39  ISAQQFARDLQALGKVGTITARIHSPGGDVFEGMAIYNMIKGHPAHKVCYIDGLAASMAS 98

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
           ++  A ++       NA +++H+P GG  G A D+ ++A  + K++  L   Y    G +
Sbjct: 99  VIAMAFDEV--IMPENAMMMVHKPWGGTLGDAEDMRKYADLLDKVEGNLVGAYQHKTGLS 156

Query: 177 YEEVEKTLDRDHIMSASEACDWGVV 201
            +E+   L  +  ++  EA + G  
Sbjct: 157 EDELHALLAAETWLTGREAVEKGFA 181


>gi|254884002|ref|ZP_05256712.1| clp protease [Bacteroides sp. 4_3_47FAA]
 gi|260173155|ref|ZP_05759567.1| peptidase S14, ClpP [Bacteroides sp. D2]
 gi|294778504|ref|ZP_06743927.1| Clp protease [Bacteroides vulgatus PC510]
 gi|319640506|ref|ZP_07995227.1| hypothetical protein HMPREF9011_00824 [Bacteroides sp. 3_1_40A]
 gi|254836795|gb|EET17104.1| clp protease [Bacteroides sp. 4_3_47FAA]
 gi|294447766|gb|EFG16343.1| Clp protease [Bacteroides vulgatus PC510]
 gi|317387884|gb|EFV68742.1| hypothetical protein HMPREF9011_00824 [Bacteroides sp. 3_1_40A]
          Length = 345

 Score =  124 bits (312), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 84/158 (53%), Gaps = 5/158 (3%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM 108
           G+ +D++ +   A+ L LEAE    ++ + INS GG V +G+AI++ ++  K  I+ +  
Sbjct: 23  GEYDDNVRSGDIAREL-LEAEALTGKVDVRINSNGGEVYSGIAIFNALKNSKADITIYVD 81

Query: 109 GQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           G AASM S++   G+         AR++LH   GG  G   +++   ++I  ++  L E+
Sbjct: 82  GIAASMASVIALCGKPVQ--MSRYARLMLHSVQGGCYGNKDEMKDCIREIEALEDTLCEM 139

Query: 169 YVKNCGKTYEEVEKTL--DRDHIMSASEACDWGVVDKV 204
           Y    GK  EE+       +DH + A EA   G++D +
Sbjct: 140 YATRMGKDKEEIRAMYFDGKDHWLRADEALALGLIDGI 177


>gi|254704398|ref|ZP_05166226.1| ATP-dependent Clp protease proteolytic subunit [Brucella suis bv. 3
           str. 686]
          Length = 95

 Score =  124 bits (312), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 71/94 (75%), Positives = 85/94 (90%)

Query: 9   KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           +D  +  + LVPMVVEQTNRGER+YDI+SRLLKERI+FV G +ED M+ L+CAQLLFLEA
Sbjct: 2   RDPIETVMNLVPMVVEQTNRGERAYDIFSRLLKERIIFVNGPVEDGMSMLVCAQLLFLEA 61

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           ENP+KEI++YINSPGGVVT+GMAIYDTMQFI+PP
Sbjct: 62  ENPKKEINMYINSPGGVVTSGMAIYDTMQFIRPP 95


>gi|229104552|ref|ZP_04235218.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock3-28]
 gi|228678888|gb|EEL33099.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock3-28]
          Length = 239

 Score =  124 bits (312), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 43/142 (30%), Positives = 76/142 (53%), Gaps = 4/142 (2%)

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E  N  + I+LYINSPGG V   MAI   +Q     + ++  G  AS  S+L    +K +
Sbjct: 40  ELGNGIETINLYINSPGGSVFETMAIIAMLQRHPAKVISYIDGIGASCASVLPMISDKII 99

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE--VEKTL 184
            +A  N+ +++H      SG A  + + A DI +I + + + Y+   G   +E  +++ L
Sbjct: 100 MYA--NSMLMVHNAWTYASGNADQLRKAADDIERINKSMVQHYLTRAGDKLDEDILKQLL 157

Query: 185 DRDHIMSASEACDWGVVDKVLM 206
           D +  +SA EA ++G+ D+++ 
Sbjct: 158 DAETWLSADEAMEYGLCDEIIS 179


>gi|148555105|ref|YP_001262687.1| peptidase S14, ClpP [Sphingomonas wittichii RW1]
 gi|148500295|gb|ABQ68549.1| peptidase S14, ClpP [Sphingomonas wittichii RW1]
          Length = 688

 Score =  124 bits (312), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 10/159 (6%)

Query: 46  FVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM---QFIKPP 102
            V    +   A  I   +          ++ + INSPGG V  G+AIY+ +   +     
Sbjct: 9   IVGDSWDGLDANTIVPLI-----SAGDDDLDVRINSPGGYVMEGLAIYNAIIRERGKGRK 63

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIK 162
           ++T   G AASMGS+L  AGE+       NA +++H P     G A ++ R A  + +++
Sbjct: 64  VTTHIDGLAASMGSILAMAGEEI--VMADNALLMIHNPWDCACGDAIELRRAADRLDQLR 121

Query: 163 RRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            ++  IY K  G   + +   LD +  M+A+EA     +
Sbjct: 122 DQMVGIYSKATGLEADALIPMLDAETWMTATEALALNFI 160


>gi|126668253|ref|ZP_01739213.1| putative protease/scaffold protein [Marinobacter sp. ELB17]
 gi|126627279|gb|EAZ97916.1| putative protease/scaffold protein [Marinobacter sp. ELB17]
          Length = 621

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 83/170 (48%), Gaps = 8/170 (4%)

Query: 39  LLKERIVFVTGQIEDH--MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           LL +  +++ G I +    A      L  L+     + +++ INS GG V+  +AIY+ +
Sbjct: 8   LLAQNEIYIYGPIGEGNVSAKAFVDALKTLD---TAQTVNVRINSEGGDVSHAIAIYNAL 64

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQ 156
             + P +     G AAS  S +  AG K       NA +++H+P  G  G +  + +  +
Sbjct: 65  NEL-PDVMIHIDGLAASSASFVAMAGNKT--LMAGNAILMIHRPWTGAVGDSDAMRQTGE 121

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
            + K +  L   Y K  G + +++ + L  +  ++A+EA + G VD+V+ 
Sbjct: 122 ILDKFQPILVSAYAKKTGLSDDKLNEMLAAETWLTAAEALELGFVDEVIE 171


>gi|304316281|ref|YP_003851426.1| peptidase S14 ClpP [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
 gi|302777783|gb|ADL68342.1| peptidase S14 ClpP [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
          Length = 242

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 78/165 (47%), Gaps = 4/165 (2%)

Query: 43  RIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           R +++ G I  E  +   +  +    E  + + +I+++INSPGG + A   IY+ +   K
Sbjct: 24  RTLYIDGPIAEESWLGDEVTPKQFKSELLSGEGDITIWINSPGGDIFAANQIYNMLMDYK 83

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
             ++    G AAS  S++  AG  G  F  P + +++H P     G   ++E+    + +
Sbjct: 84  GKVTVKIDGIAASAASVIAMAG--GDVFMSPVSMMMIHNPMTIAIGDTEEMEKAIAMLEE 141

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           IK  +   Y    G +  ++   +D +   +A +A + G  D +L
Sbjct: 142 IKESIINAYELKTGLSRAKISHLMDAESWFNARKAVELGFADGIL 186


>gi|256003556|ref|ZP_05428546.1| peptidase S14 ClpP [Clostridium thermocellum DSM 2360]
 gi|255992580|gb|EEU02672.1| peptidase S14 ClpP [Clostridium thermocellum DSM 2360]
 gi|316941379|gb|ADU75413.1| peptidase S14 ClpP [Clostridium thermocellum DSM 1313]
          Length = 241

 Score =  124 bits (311), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 78/165 (47%), Gaps = 4/165 (2%)

Query: 43  RIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           R +++ G I  E  +   +  +    E  + + +I+++INSPGG + A   IY+ +   K
Sbjct: 24  RTLYIDGPIAEESWLGDEVTPKQFKSELLSGEGDITIWINSPGGDIFAANQIYNMLMDYK 83

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
             ++    G AAS  S++  AG  G  F  P + +++H P     G   ++E+    + +
Sbjct: 84  GKVTVKIDGIAASAASVIAMAG--GDVFMSPVSMMMIHNPMTIAIGDTEEMEKAIAMLEE 141

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           IK  +   Y    G +  ++   +D +   +A +A + G  D +L
Sbjct: 142 IKESIINAYELKTGLSRAKISHLMDAESWFNARKAVELGFADGIL 186


>gi|281418279|ref|ZP_06249299.1| peptidase S14 ClpP [Clostridium thermocellum JW20]
 gi|281409681|gb|EFB39939.1| peptidase S14 ClpP [Clostridium thermocellum JW20]
          Length = 241

 Score =  124 bits (311), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 78/165 (47%), Gaps = 4/165 (2%)

Query: 43  RIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           R +++ G I  E  +   +  +    E  + + +I+++INSPGG + A   IY+ +   K
Sbjct: 24  RTLYIDGPIAEESWLGDEVTPKQFKSELLSGEGDITIWINSPGGDIFAANQIYNMLMDYK 83

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
             ++    G AAS  S++  AG  G  F  P + +++H P     G   ++E+    + +
Sbjct: 84  GKVTVKIDGIAASAASVIAMAG--GDVFMSPVSMMMIHNPMTIAIGDTEEMEKAIAMLEE 141

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           IK  +   Y    G +  ++   +D +   +A +A + G  D +L
Sbjct: 142 IKESIINAYELKTGLSRAKISHLMDAESWFNARKAVELGFADGIL 186


>gi|255013782|ref|ZP_05285908.1| serine protease [Bacteroides sp. 2_1_7]
          Length = 343

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 52/158 (32%), Positives = 80/158 (50%), Gaps = 6/158 (3%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM 108
           G+  D  A  I  +L+  EAE   K I + INS GG V  G+AI++ ++  K  I  +  
Sbjct: 23  GEYSDVTAAAIVRELM--EAEASGKRIDVRINSNGGDVYTGIAIFNALRGSKADIHIYVD 80

Query: 109 GQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           G AASM S++   G+         AR++LH  SGG  G  +++ R  +++  ++  L E+
Sbjct: 81  GIAASMASVIALCGKPVE--MSKYARLMLHSVSGGCYGNKTELRRCLEEVEALENTLCEM 138

Query: 169 YVKNCGKTYEEVEKTL--DRDHIMSASEACDWGVVDKV 204
           Y    G + EE+      D DH + A EA   G +D V
Sbjct: 139 YAPRLGTSVEEIRARYFDDADHWLKADEALALGFIDGV 176


>gi|125974136|ref|YP_001038046.1| peptidase S14, ClpP [Clostridium thermocellum ATCC 27405]
 gi|125714361|gb|ABN52853.1| peptidase S14, ClpP [Clostridium thermocellum ATCC 27405]
          Length = 242

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 78/165 (47%), Gaps = 4/165 (2%)

Query: 43  RIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           R +++ G I  E  +   +  +    E  + + +I+++INSPGG + A   IY+ +   K
Sbjct: 24  RTLYIDGPIAEESWLGDEVTPKQFKSELLSGEGDITIWINSPGGDIFAANQIYNMLMDYK 83

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
             ++    G AAS  S++  AG  G  F  P + +++H P     G   ++E+    + +
Sbjct: 84  GKVTVKIDGIAASAASVIAMAG--GDVFMSPVSMMMIHNPMTIAIGDTEEMEKAIAMLEE 141

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           IK  +   Y    G +  ++   +D +   +A +A + G  D +L
Sbjct: 142 IKESIINAYELKTGLSRAKISHLMDAESWFNARKAVELGFADGIL 186


>gi|2342674|gb|AAB70396.1| Similar to ATP-dependent Clp protease (gb|D90915). EST gb|N65461
           comes from this gene [Arabidopsis thaliana]
          Length = 292

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 53/197 (26%), Positives = 87/197 (44%), Gaps = 39/197 (19%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDH---------MATLICAQLLFLEAENPQKE 74
           E   R     D+ S LL  RIV++    +D          +  L+ A+L++L+  +P++ 
Sbjct: 112 EHRPRTPPP-DLPSMLLDGRIVYIGMPTDDDIFCFQLVPAVTELVVAELMYLQWLDPKEP 170

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I +YINS G             +     + T C+G A     LLLSAG KG RF +P+  
Sbjct: 171 IYIYINSTGTT-----------RDDGETVHTVCVGAAIGQACLLLSAGTKGKRFMMPH-- 217

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKI-------KRRLNEIYVKNCGKTYEEVEKTLDRD 187
                      G+ S+ +     I  +       +  L E+  K+ G + E V   + R 
Sbjct: 218 ---------AKGEESEFDYFIFLIPVMQLQVITNRDILVELLSKHTGNSVETVANVMRRP 268

Query: 188 HIMSASEACDWGVVDKV 204
           + M A +A ++GV+D+V
Sbjct: 269 YYMDAPKAKEFGVIDRV 285


>gi|297242697|ref|ZP_06926635.1| ATP-dependent Clp, protease subunit [Gardnerella vaginalis AMD]
 gi|296888908|gb|EFH27642.1| ATP-dependent Clp, protease subunit [Gardnerella vaginalis AMD]
          Length = 244

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 4/168 (2%)

Query: 42  ERIVFVTGQIEDHMA--TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           ER +F+ G I +       I  QL   E       I+++INSPGG   A   IY+ +   
Sbjct: 21  ERTLFLNGTIAEESWFDDDITPQLFKDELNAGSGNITVWINSPGGDCVAAAQIYNMLMDY 80

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
           K  ++    G AAS  S++  AG K   +  P + +++H P     G   ++E+    + 
Sbjct: 81  KGCVTVKIDGIAASAASVIAMAGTKV--YMSPVSMLMIHNPMTVAFGNRDEMEKAISMLD 138

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           ++K  +   Y    G    ++   +D +  M A++A + G  D VL  
Sbjct: 139 EVKESIINAYEIKTGLNRVKLSHLMDSETWMDANKAVELGFADGVLTR 186


>gi|120599284|ref|YP_963858.1| peptidase S14, ClpP [Shewanella sp. W3-18-1]
 gi|120559377|gb|ABM25304.1| peptidase S14, ClpP [Shewanella sp. W3-18-1]
          Length = 284

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/145 (26%), Positives = 76/145 (52%), Gaps = 6/145 (4%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L +   +K++++YINSPGG +  G+AIY+ ++  K  ++T  +G AAS  S++  AGE  
Sbjct: 63  LRSIGNEKDVTVYINSPGGDMFEGIAIYNRLREHKGKVTTKVLGLAASAASVIYMAGEDD 122

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
            RF   +A +++H       G    +   A D+ +    + ++YV+ CG++ + +   +D
Sbjct: 123 ARFVASSAFLMIHNCWVFAIGNRHALRNIADDMEEFDAAMVDLYVEGCGQSEKVIATMMD 182

Query: 186 RDHIMSASEACDWGV------VDKV 204
            +  +   +A + G        D++
Sbjct: 183 EETFIRGKKAVELGFAADTLSADEI 207


>gi|24374490|ref|NP_718533.1| ClpP protease family protein [Shewanella oneidensis MR-1]
 gi|24349072|gb|AAN55977.1|AE015735_11 ClpP protease family protein [Shewanella oneidensis MR-1]
          Length = 284

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 79/156 (50%), Gaps = 6/156 (3%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L +   +K++++YINSPGG +  G+AIY+ ++  K  ++T  +G AAS  S++  AGE  
Sbjct: 63  LRSIGNEKDVTVYINSPGGDMFEGIAIYNRLREHKGKVTTKVLGLAASAASVIYMAGEDD 122

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
            RF   +A +++H       G    +   A D+ +    + ++YV+ CG++ + +   +D
Sbjct: 123 ARFVASSAFLMIHNCWVFAIGNRHALRNIADDMEEFDAAMVDLYVEGCGQSEKVIATMMD 182

Query: 186 RDHIMSASEACDWGV------VDKVLMSRIDIEEKS 215
            +  +   +A + G        D++  +  +    S
Sbjct: 183 EETFIRGKKAVELGFAADTLSADEIGETTENTNANS 218


>gi|298385899|ref|ZP_06995456.1| protease [Bacteroides sp. 1_1_14]
 gi|298261127|gb|EFI03994.1| protease [Bacteroides sp. 1_1_14]
          Length = 339

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 82/158 (51%), Gaps = 5/158 (3%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM 108
           G+  D + +   A+ L LEAE    ++ + INS GG V +G+AI++ ++  K  I+ +  
Sbjct: 17  GEYGDGVRSGDIAREL-LEAEALTGKVDVRINSNGGEVYSGIAIFNALKNSKADITIYVD 75

Query: 109 GQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           G AASM S++   G+         AR++LH   GG  G   +++   ++I  ++  L E+
Sbjct: 76  GIAASMASVIALCGKPVQ--MSRYARLMLHSVQGGCYGNKDEMKDCIREIEALEDTLCEM 133

Query: 169 YVKNCGKTYEEVEKTL--DRDHIMSASEACDWGVVDKV 204
           Y    GK  EE+       +DH + A EA   G++D +
Sbjct: 134 YATRMGKDKEEIRAMYFDGKDHWLRADEALALGLIDGI 171


>gi|218891274|ref|YP_002440141.1| ClpP protease [Pseudomonas aeruginosa LESB58]
 gi|218771500|emb|CAW27267.1| ClpP protease [Pseudomonas aeruginosa LESB58]
          Length = 296

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 2/142 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L +     ++++ INSPGG V  G+AIY+ ++  K  ++   +G AAS  S +  AG++ 
Sbjct: 71  LRSIGSDIDVTVNINSPGGDVFEGLAIYNLLREHKGKVTVNIIGLAASAASFIAMAGDEI 130

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                  A +++H       G  +D+   A  +      L +IY +  G   +++ K +D
Sbjct: 131 R--IGRAAFLMIHNAWLIAMGNRNDLREIADWLEPFDMTLADIYAQRTGIDIDDIVKQMD 188

Query: 186 RDHIMSASEACDWGVVDKVLMS 207
            +  +   EA D G  D  L S
Sbjct: 189 AETWIGGREAVDKGWADAFLES 210


>gi|298253816|ref|ZP_06977405.1| ATP-dependent Clp, protease subunit [Gardnerella vaginalis 5-1]
 gi|297532152|gb|EFH71125.1| ATP-dependent Clp, protease subunit [Gardnerella vaginalis 5-1]
          Length = 244

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 4/168 (2%)

Query: 42  ERIVFVTGQIEDHMA--TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           ER +F+ G I +       I  QL   E       I+++INSPGG   A   IY+ +   
Sbjct: 21  ERTLFLNGTIAEESWFDDDITPQLFKDELNAGSGNITVWINSPGGDCVAAAQIYNMLMDY 80

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
           K  ++    G AAS  S++  AG K   +  P + +++H P     G   ++E+    + 
Sbjct: 81  KGCVTVKIDGIAASAASVIAMAGTKV--YMSPVSMLMIHNPMTVAFGNRDEMEKAISMLD 138

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           ++K  +   Y    G    ++   +D +  M A++A + G  D VL  
Sbjct: 139 EVKESIINAYEIKTGLNRVKLSHLMDSETWMDANKAVELGFADGVLTR 186


>gi|229092690|ref|ZP_04223838.1| Peptidase S14 ClpP [Bacillus cereus Rock3-42]
 gi|228690717|gb|EEL44494.1| Peptidase S14 ClpP [Bacillus cereus Rock3-42]
          Length = 247

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 6/158 (3%)

Query: 47  VTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTF 106
           + G   ++ A  +  ++  ++AE    +I ++INS GG    G+AI + ++     I   
Sbjct: 34  IGGWFSENNAEAVRRKIQDVKAE----KIHVHINSGGGSAFDGVAICNQLKQHSAEIIVH 89

Query: 107 CMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLN 166
             G AAS  S++  AG+K       N  +++HQ S    G A   E+ A+D+ KI   L 
Sbjct: 90  IDGWAASAASVIAMAGDKI--IMPSNTMMMIHQASTFEYGNADLFEKTARDLRKIDSALA 147

Query: 167 EIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             Y K    T EE+++ L  +  ++A EA   G+ D++
Sbjct: 148 ASYKKRFVGTDEELKQLLKDETWLTAEEAVALGLADEI 185


>gi|325674309|ref|ZP_08153998.1| Clp protease [Rhodococcus equi ATCC 33707]
 gi|325554989|gb|EGD24662.1| Clp protease [Rhodococcus equi ATCC 33707]
          Length = 376

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 73/158 (46%), Gaps = 6/158 (3%)

Query: 47  VTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTF 106
           +     +  A  I  Q+  + A+    EI++ INSPGG    G+AI + ++     +   
Sbjct: 25  IGSYWRETSAQAIAEQIKDITAD----EITVRINSPGGSAFDGIAIMNALRAHNARVVVH 80

Query: 107 CMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLN 166
             G AAS  S++  AG++      P +++++H+      G A+ +   A  + K+   + 
Sbjct: 81  VDGLAASAASVIAMAGDEI--VMGPGSQMMIHEAWVFTEGDAAFLRSEADRLDKMSDSIT 138

Query: 167 EIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            +Y +  G  ++E    +  +   +A EA   G+ D++
Sbjct: 139 SLYARRAGGDFDEWRALVAAETWFTAEEAVTAGLADRI 176


>gi|292491118|ref|YP_003526557.1| peptidase S14 ClpP [Nitrosococcus halophilus Nc4]
 gi|291579713|gb|ADE14170.1| peptidase S14 ClpP [Nitrosococcus halophilus Nc4]
          Length = 785

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 9/161 (5%)

Query: 47  VTGQIEDHM-ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIST 105
           + G  E+ + A      L  LEA    + I+  INS GG V  G+AI++ +      ++T
Sbjct: 44  IGGWDEESIDARRFVQDLASLEA----RLITARINSIGGSVYDGLAIHNALVRHPAQVTT 99

Query: 106 FCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRL 165
              G AAS+ SL+  AGE+  R    NA +++H P     G + +  R A  + K    +
Sbjct: 100 TIDGIAASIASLIAMAGEE--RTMASNALLMVHAPWTLAIGNSEEFRRMADMLDKHSEAM 157

Query: 166 NEIYVKNCGKTYEEVEKTL--DRDHIMSASEACDWGVVDKV 204
              Y +  G++ E++   L    DH  +A EA   G V  V
Sbjct: 158 TAAYAEATGQSAEDILALLTDGEDHYYTAEEAQALGFVHSV 198


>gi|114331459|ref|YP_747681.1| peptidase S14, ClpP [Nitrosomonas eutropha C91]
 gi|114308473|gb|ABI59716.1| peptidase S14, ClpP [Nitrosomonas eutropha C91]
          Length = 228

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 64/163 (39%), Gaps = 6/163 (3%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPI 103
            +          A     +L+ ++A      I L INSPGG V +  AI   ++     +
Sbjct: 18  TIVSDDFWGGVTAISFVKELMAIKAPV----IHLRINSPGGDVFSARAIETAIREHNSEV 73

Query: 104 STFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKR 163
                G AAS  S +  A +         A  ++H+      G A D+   A  + K+  
Sbjct: 74  IAHIDGVAASAASYIALAAD--NIVIAEGAFYMIHKAWSFAMGNADDLLEMAALLEKVDE 131

Query: 164 RLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
            L   Y K  G+  +++   +  +   SA+EA ++G  D V  
Sbjct: 132 SLVTTYAKRTGQAEDQIRDWMRNETWFSAAEAVEYGFADSVAE 174


>gi|293401151|ref|ZP_06645295.1| Clp protease [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305277|gb|EFE46522.1| Clp protease [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 241

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 43/173 (24%), Positives = 81/173 (46%), Gaps = 5/173 (2%)

Query: 42  ERIVFVTGQIEDHMA--TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           ER +F+ G I +       +  QL   E  +   +I+++INSPGG   A   IY+ +   
Sbjct: 13  ERTLFLNGTIAEESWFDDDVTPQLFKDELLSGSGDITVWINSPGGDCVAAAQIYNMLMDY 72

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
           K  ++    G AAS  S++  AG K      P + +++H P     G   ++E+    + 
Sbjct: 73  KGNVTVKIDGIAASAASVIAMAGTKV--LVSPVSMMMIHNPMTVAFGNTGEMEKAIAMLD 130

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
           ++K  +   Y    G +  ++   +D +  M+A+ A + G  D+V+  R + +
Sbjct: 131 EVKESIINAYEIKTGLSRAKLSHLMDAETWMNANMAVELGFADEVM-KREEAD 182


>gi|302344005|ref|YP_003808534.1| peptidase S14 ClpP [Desulfarculus baarsii DSM 2075]
 gi|301640618|gb|ADK85940.1| peptidase S14 ClpP [Desulfarculus baarsii DSM 2075]
          Length = 245

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 69/170 (40%), Gaps = 7/170 (4%)

Query: 47  VTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTF 106
           + G      A  +      L+       I L INSPGG V    A+   +Q     I   
Sbjct: 50  IGGWFGITAADFVR----DLQGITAS-TIHLRINSPGGGVFEAEAMQTALQQHPARIIAH 104

Query: 107 CMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLN 166
             G AAS    +  A ++        A  ++H   G   G A+++  +A  + K+   L 
Sbjct: 105 IDGLAASAAGFVALAADEIE--MADGAFFMIHNAWGVAVGDATEMLDYAAMLEKMDANLV 162

Query: 167 EIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
             Y +  G + E +   +  +  +SA+EA D G VD+V   +   +++ +
Sbjct: 163 RDYRRKTGHSAERIATWMQAETWLSAAEALDLGFVDRVFTPKSQKKDEDQ 212


>gi|229096954|ref|ZP_04227923.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock3-29]
 gi|228686564|gb|EEL40473.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock3-29]
          Length = 239

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 42/142 (29%), Positives = 76/142 (53%), Gaps = 4/142 (2%)

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E  +  + I+LYINSPGG V   MAI   +Q     + ++  G  AS  S+L    +K +
Sbjct: 40  ELGDGIETINLYINSPGGSVFETMAIIAMLQRHPAKVISYIDGIGASCASVLPMISDKII 99

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE--VEKTL 184
            +A  N+ +++H      SG A  + + A DI +I + + + Y+   G   +E  +++ L
Sbjct: 100 MYA--NSMLMVHNAWTYASGNADQLRKAADDIERINQSMVQHYLTRAGDKLDEDILKQLL 157

Query: 185 DRDHIMSASEACDWGVVDKVLM 206
           D +  +SA EA ++G+ D+++ 
Sbjct: 158 DAETWLSADEAMEYGLCDEIIS 179


>gi|307129028|ref|YP_003881044.1| Prophage Clp protease-like protein [Dickeya dadantii 3937]
 gi|306526557|gb|ADM96487.1| Prophage Clp protease-like protein [Dickeya dadantii 3937]
          Length = 643

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/150 (33%), Positives = 79/150 (52%), Gaps = 6/150 (4%)

Query: 59  ICAQLL--FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
           I AQ     L+A      I+L I+SPGG V  G+AIY+ +      I+    G AASM S
Sbjct: 31  ITAQKFSEDLKALGDISHITLNIHSPGGDVFDGIAIYNLLSKHPAKITVHIDGLAASMAS 90

Query: 117 LLLSAGEKGMRFALP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK 175
           ++  AG+   R  +P NA +++H+P G   G A+D+  +A+ + K++  L   Y +  GK
Sbjct: 91  VIAMAGD---RIVMPENALMMIHKPWGISGGNANDMRDYAELLDKVEHVLIPAYARKTGK 147

Query: 176 TYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           + EE+   L+ +  M   E    G  D++L
Sbjct: 148 SAEELAAMLEEETWMDGRECVAQGFADELL 177


>gi|324324387|gb|ADY19647.1| peptidase S14 ClpP [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 247

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 6/158 (3%)

Query: 47  VTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTF 106
           + G   ++ A  +  ++  ++AE    +I ++INS GG    G+AI + ++     I   
Sbjct: 34  IGGWFSENNAEAVRRKIQDVKAE----KIHVHINSGGGSAFDGVAICNQLKQHSAEIIVH 89

Query: 107 CMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLN 166
             G AAS  S++  AG+K       N  +++HQ S    G A   E+ A+D+ KI   L 
Sbjct: 90  IDGWAASAASVIAMAGDKI--IMPSNTMMMIHQASTFEYGNADLFEKTARDLRKIDSALA 147

Query: 167 EIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             Y K    T EE+++ L  +  ++A EA   G+ D++
Sbjct: 148 ASYKKRFVGTDEELKQLLKDETWLTAEEAVALGLADEI 185


>gi|168822022|ref|ZP_02834022.1| Clp protease domain protein [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205341497|gb|EDZ28261.1| Clp protease domain protein [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
          Length = 684

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 54/195 (27%), Positives = 88/195 (45%), Gaps = 11/195 (5%)

Query: 18  LVPMVVEQTNRGE----RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLL--FLEAENP 71
           + P++     RGE      Y I +       V +  +I       I A+     L A   
Sbjct: 1   MPPVMTAGNGRGEGSSNSWYSIRAAANNTAEVRIYDEIGGW---GISARWFAEELAALGQ 57

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
              I+L+I+SPGG V  G+AIY+ ++      + +  G A SM S +   G         
Sbjct: 58  INRINLHIHSPGGAVLDGIAIYNLLKNHPAQKTVYIDGMACSMASAIAMVGNPI--IMPE 115

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           NA +++H+P G   G+A DI  +A  + KI+  +  IY +  GK  E++   L ++  MS
Sbjct: 116 NAMMMIHKPRGVAGGEAEDIREYADLLDKIESVIIPIYTEKTGKMPEDIAAMLAKETWMS 175

Query: 192 ASEACDWGVVDKVLM 206
            +E    G  DK++ 
Sbjct: 176 GAECVSEGFADKLIQ 190


>gi|228912077|ref|ZP_04075797.1| Peptidase S14 ClpP [Bacillus thuringiensis IBL 200]
 gi|228847580|gb|EEM92514.1| Peptidase S14 ClpP [Bacillus thuringiensis IBL 200]
          Length = 247

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 6/158 (3%)

Query: 47  VTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTF 106
           + G   ++ A  +  ++  ++AE    +I ++INS GG    G+AI + ++     I   
Sbjct: 34  IGGWFSENNAEAVRRKIQDVKAE----KIHVHINSGGGSAFDGVAICNQLKQHDAEIIVH 89

Query: 107 CMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLN 166
             G AAS  S++  AG+K       N  +++HQ S    G A   E+ A+D+ KI   L 
Sbjct: 90  IDGWAASAASVIAMAGDKI--IMPSNTMMMIHQASTFEYGNADLFEKTARDLRKIDSALA 147

Query: 167 EIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             Y K    T EE+++ L  +  ++A EA   G+ D++
Sbjct: 148 ASYKKRFVGTDEELKQLLKDETWLTAEEAVALGLADEI 185


>gi|116630106|ref|YP_815278.1| protease subunit of ATP-dependent Clp protease [Lactobacillus
           gasseri ATCC 33323]
 gi|238854143|ref|ZP_04644490.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP
           [Lactobacillus gasseri 202-4]
 gi|116095688|gb|ABJ60840.1| Protease subunit of ATP-dependent Clp protease [Lactobacillus
           gasseri ATCC 33323]
 gi|238833219|gb|EEQ25509.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP
           [Lactobacillus gasseri 202-4]
          Length = 223

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 44/185 (23%), Positives = 83/185 (44%), Gaps = 4/185 (2%)

Query: 31  RSYDIYSRLLKERIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTA 88
           + +  +S    +R++ + G I  +  +   +  Q+   E    +  I L++NSPGG   A
Sbjct: 2   KRFWNWSGPQNQRVLTINGTIAEDSWVDDEVTPQVFQDELSQGKGPIDLWLNSPGGDCVA 61

Query: 89  GMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQA 148
              IY  +      ++    G AAS  S++  AG K     +P A I++H P     GQ 
Sbjct: 62  ASRIYTMLMNYPDNVNVKIDGIAASAASVIAMAGTKV--SMVPTAMIMIHNPLTIVGGQK 119

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
            D+++ AQ + + K  +   Y        E++   +D +  M+ ++A + G  D +L   
Sbjct: 120 EDLDQAAQMLAETKESIINAYELKTNLPREKISSMMDDETWMNVNKAIELGFADDMLGQN 179

Query: 209 IDIEE 213
            D+ +
Sbjct: 180 KDVTD 184


>gi|320085572|emb|CBY95351.1| ATP-dependent Clp protease proteolytic subunit Endopeptidase Clp
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
          Length = 696

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 54/207 (26%), Positives = 91/207 (43%), Gaps = 11/207 (5%)

Query: 6   CAKKDSEDVFLGLVPMVVEQTNRGE----RSYDIYSRLLKERIVFVTGQIEDHMATLICA 61
             +  +    + + P++     RGE      Y I +       V +  +I       I A
Sbjct: 1   MPEVKTTVAAIKMPPVMTAGNGRGEGSSNSWYSIRAAANNTAEVRIYDEIGGW---GISA 57

Query: 62  QLL--FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
           +     L A      I+L+I+SPGG V  G+AIY+ ++      + +  G A SM S + 
Sbjct: 58  RWFAEELAALGQINRINLHIHSPGGAVLDGIAIYNLLKNHPAQKTVYIDGMACSMASAIA 117

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
             G         NA +++H+P G   G+A DI  +A  + KI+  +  IY +  GK  E+
Sbjct: 118 MVGNPI--IMPENAMMMIHKPRGVAGGEAEDIREYADLLDKIESVIIPIYTEKTGKMPED 175

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVLM 206
           +   L ++  MS +E    G  DK++ 
Sbjct: 176 IAAMLAKETWMSGAECVSVGFADKLIQ 202


>gi|228959905|ref|ZP_04121572.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228799786|gb|EEM46736.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 260

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 2/132 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           ++ + INSPGG V  G  IY  ++     +    +G AAS  S++  AG+K      P A
Sbjct: 44  DLIVLINSPGGYVHEGSEIYTALKNYPGNVEVQIVGLAASAASVIAMAGDKVR--ISPTA 101

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           +I++H  S    G   D+E+ A+ +    R +   YV   GK+ EE+   +  +  M   
Sbjct: 102 QIMIHNASMWNGGDHRDMEKAAEMLKTTDRAIVNAYVIKSGKSEEELLNMMAEETWMGPQ 161

Query: 194 EACDWGVVDKVL 205
           +A +   VD+++
Sbjct: 162 QALENNFVDEIM 173


>gi|217958120|ref|YP_002336664.1| Clp protease [Bacillus cereus AH187]
 gi|217064485|gb|ACJ78735.1| Clp protease [Bacillus cereus AH187]
 gi|282765831|gb|ADA84954.1| Clp protease [Bacillus phage 11143]
          Length = 248

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 6/158 (3%)

Query: 47  VTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTF 106
           + G   ++ A  +  ++  ++AE    +I ++INS GG    G+AI + ++     I   
Sbjct: 35  IGGWFSENNAEAVRRKIQDVKAE----KIHVHINSGGGSAFDGVAICNQLKQHNAEIIVH 90

Query: 107 CMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLN 166
             G AAS  S++  AG+K       N  +++HQ S    G A   E+ A+D+ KI   L 
Sbjct: 91  IDGWAASAASVIAMAGDKI--IMPSNTMMMIHQASTFEYGNADLFEKTARDLRKIDSALA 148

Query: 167 EIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             Y K    T EE+++ L  +  ++A EA   G+ D++
Sbjct: 149 ASYKKRFVGTDEELKQLLKDETWLTAEEAVALGLADEI 186


>gi|296051584|ref|YP_003632258.1| peptidase S14 ClpP [Planctomyces limnophilus DSM 3776]
 gi|296016821|gb|ADG70059.1| peptidase S14 ClpP [Planctomyces limnophilus DSM 3776]
          Length = 179

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 2/139 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           E+ + INS GG V    AIY  ++     I     G+A S  S +  AG+K       + 
Sbjct: 14  EVVIRINSVGGYVGEASAIYQLLKEHPANIHVKIDGEAISCASWIAMAGDKIT--IAEHG 71

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H PS   SG A D+ + A+ +   K  +  IY    G   E+V+K +  +  M+A+
Sbjct: 72  LMMVHDPSTWISGTADDLRKEAEVLDSYKEVIAGIYAARSGTDVEDVKKMMSDETWMTAT 131

Query: 194 EACDWGVVDKVLMSRIDIE 212
           +A D G VD++  ++   E
Sbjct: 132 QAKDKGFVDEISANKSKPE 150


>gi|206975220|ref|ZP_03236134.1| prophage LambdaBa02, Clp protease family protein [Bacillus cereus
           H3081.97]
 gi|206746641|gb|EDZ58034.1| prophage LambdaBa02, Clp protease family protein [Bacillus cereus
           H3081.97]
          Length = 251

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 41/142 (28%), Positives = 77/142 (54%), Gaps = 4/142 (2%)

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E  +  + I+LYINSPGG V   MAI   +Q  +  + ++  G  AS  S+L    +K +
Sbjct: 51  ELGDDIETINLYINSPGGSVFETMAIIAMLQRHQAKVISYIDGIGASCASVLPMISDKII 110

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCG--KTYEEVEKTL 184
            +A  N+ +++H      SG A+ + + A DI +I + + + Y+   G     + +++ L
Sbjct: 111 MYA--NSMMMIHNAWTYASGNANQLRKAADDIERINQSMVQHYLTRAGDKLDEDTLKQLL 168

Query: 185 DRDHIMSASEACDWGVVDKVLM 206
           D +  +SA EA ++G+ D+++ 
Sbjct: 169 DAETWLSAEEAMNYGLCDEIIS 190


>gi|229122186|ref|ZP_04251401.1| Peptidase S14 ClpP [Bacillus cereus 95/8201]
 gi|228661312|gb|EEL16937.1| Peptidase S14 ClpP [Bacillus cereus 95/8201]
          Length = 247

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 6/158 (3%)

Query: 47  VTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTF 106
           + G   ++ A ++  ++  ++AE    +I ++INS GG    G+AI + ++     I   
Sbjct: 34  IGGWFSENNAEVVRRKIQDVKAE----KIHVHINSGGGSAFDGVAICNQLKQHSAEIIVH 89

Query: 107 CMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLN 166
             G AAS  S++  AG+K       N  +++HQ S    G A   E+ A+D+ KI   L 
Sbjct: 90  IDGWAASAASVIAMAGDKI--IMPSNTMMMIHQASTFEYGNADLFEKTARDLRKIDSALA 147

Query: 167 EIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             Y K    T EE+++ L  +  ++A EA   G+ D++
Sbjct: 148 ASYKKRFVGTDEELKQLLKDETWLTAEEAVALGLADEI 185


>gi|217959640|ref|YP_002338192.1| prophage LambdaBa02, Clp protease family protein [Bacillus cereus
           AH187]
 gi|217067295|gb|ACJ81545.1| prophage LambdaBa02, Clp protease family protein [Bacillus cereus
           AH187]
          Length = 251

 Score =  121 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 41/142 (28%), Positives = 77/142 (54%), Gaps = 4/142 (2%)

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E  +  + I+LYINSPGG V   MAI   +Q  +  + ++  G  AS  S+L    +K +
Sbjct: 51  ELGDDIETINLYINSPGGSVFETMAIIAMLQRHQAKVISYIDGIGASCASVLPMISDKII 110

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCG--KTYEEVEKTL 184
            +A  N+ +++H      SG A+ + + A DI +I + + + Y+   G     + +++ L
Sbjct: 111 MYA--NSMMMIHNAWTYASGNANQLRKAADDIERINQSMVQHYLTRAGDKLDEDTLKQLL 168

Query: 185 DRDHIMSASEACDWGVVDKVLM 206
           D +  +SA EA ++G+ D+++ 
Sbjct: 169 DAETWLSAEEAMNYGLCDEIIS 190


>gi|225863816|ref|YP_002749194.1| peptidase S14 ClpP [Bacillus cereus 03BB102]
 gi|228986816|ref|ZP_04146944.1| Peptidase S14 ClpP [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|225785756|gb|ACO25973.1| peptidase S14 ClpP [Bacillus cereus 03BB102]
 gi|228772898|gb|EEM21336.1| Peptidase S14 ClpP [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
          Length = 247

 Score =  121 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 6/158 (3%)

Query: 47  VTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTF 106
           + G   ++ A  +  ++  ++AE    +I ++INS GG    G+AI + ++     I   
Sbjct: 34  IGGWFSENNAEAVRRKIQDVKAE----KIHVHINSGGGSAFDGVAICNQLKQHSAEIIVH 89

Query: 107 CMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLN 166
             G AAS  S++  AG+K       N  +++HQ S    G A   E+ A+D+ KI   L 
Sbjct: 90  IDGWAASAASVIAMAGDKI--IMPSNTMMMIHQASTFEYGNADLFEKTARDLRKIDSALA 147

Query: 167 EIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             Y K    T EE+++ L  +  ++A EA   G+ D++
Sbjct: 148 ASYKKRFVGTDEELKQLLKDETWLTAEEAVALGLADEI 185


>gi|229181873|ref|ZP_04309181.1| Peptidase S14 ClpP [Bacillus cereus 172560W]
 gi|228601671|gb|EEK59184.1| Peptidase S14 ClpP [Bacillus cereus 172560W]
          Length = 247

 Score =  121 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 44/158 (27%), Positives = 78/158 (49%), Gaps = 6/158 (3%)

Query: 47  VTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTF 106
           + G   ++ A  +  ++  ++AE    +I ++INS GG    G+AI + ++     I   
Sbjct: 34  IGGWFSENNAEAVRRKIQDVKAE----KIHVHINSGGGSAFDGVAICNQLKQHSAEIIVH 89

Query: 107 CMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLN 166
             G AAS  S++  AG+K       N  +++HQ S    G A   E+ A+++ KI   L 
Sbjct: 90  IDGWAASAASVIAMAGDKI--IMPSNTMMMIHQASTFEYGNADLFEKTARNLRKIDSALA 147

Query: 167 EIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             Y K    T EE+++ L  +  ++A EA   G+ D++
Sbjct: 148 ASYKKRFVGTDEELKQLLKDETWLTAEEAVALGLADEI 185


>gi|323693294|ref|ZP_08107512.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           symbiosum WAL-14673]
 gi|323502777|gb|EGB18621.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           symbiosum WAL-14673]
          Length = 236

 Score =  121 bits (305), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 42/173 (24%), Positives = 76/173 (43%), Gaps = 4/173 (2%)

Query: 42  ERIVFVTGQIEDHMA--TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           ER +F+ G I +       +  +L   E      +I+++INSPGG   A   IY+ M   
Sbjct: 12  ERTLFLNGTIAEESWFDDDVTPKLFRDELFAGNGDITIWINSPGGDCVAAAQIYNMMIEY 71

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
              ++    G AAS  S++  AG K      P + +++H P     G  S++++    + 
Sbjct: 72  PGNVTVKIDGIAASAASVIAMAGTKV--LVSPVSMLMIHNPMTAAMGDTSEMQKAIAMLD 129

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
           ++K  +   Y    G +  ++   +D +  M A  A D G  D++L    +  
Sbjct: 130 EVKESIINAYEIKTGMSRAKLSHLMDAETWMDAHTAIDMGFADEILTRPAETP 182


>gi|229061293|ref|ZP_04198642.1| Peptidase S14 ClpP [Bacillus cereus AH603]
 gi|228718018|gb|EEL69660.1| Peptidase S14 ClpP [Bacillus cereus AH603]
          Length = 247

 Score =  121 bits (305), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 6/158 (3%)

Query: 47  VTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTF 106
           + G   ++ A  +  ++  ++AE    +I ++INS GG    G+AI + ++     I   
Sbjct: 34  IGGWFSENNAEAVRRKIQDVKAE----KIHVHINSGGGSAFDGVAICNLLKQHDAEIIVH 89

Query: 107 CMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLN 166
             G AAS  S++  AG+K       N  +++HQ S    G A   E+ A+D+ KI   L 
Sbjct: 90  IDGWAASAASVIAMAGDKI--VMPSNTMMMIHQASTIEYGNADLFEKTARDLRKIDSALA 147

Query: 167 EIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             Y K    T EE+ + L  +  ++A EA   G+ D++
Sbjct: 148 ASYKKRFVGTDEELRQLLKDETWLTAEEAVALGLADEI 185


>gi|226364131|ref|YP_002781913.1| peptidase S14 family protein [Rhodococcus opacus B4]
 gi|226242620|dbj|BAH52968.1| peptidase S14 family protein [Rhodococcus opacus B4]
          Length = 189

 Score =  121 bits (305), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 82/175 (46%), Gaps = 3/175 (1%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
            +  RL  +RIV +TG+++        A L   +A     E+ ++++     V A   + 
Sbjct: 13  WLAERLFDKRIVSLTGRLDAEATNRAAASLALFDASGDD-EVQVWLHGVDADVDAAATLL 71

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           DT+  +  P+   C G    +   LL+  ++  R A  +A   L +P    +G ASD+  
Sbjct: 72  DTLDLMGVPLHVHCRGDVRGVAVALLAPADR--RTAAAHATFHLREPRTSCTGPASDVAI 129

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
            A+   +  RRL +    +CG+  + V   +    I++A EA D+G++D +  +R
Sbjct: 130 AAEQHEQQLRRLQQRIADSCGRPLDTVIGDMREHRILTADEARDYGLIDTITGAR 184


>gi|227431752|ref|ZP_03913779.1| ATP-dependent Clp protease proteolytic subunit [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
 gi|227352435|gb|EEJ42634.1| ATP-dependent Clp protease proteolytic subunit [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
          Length = 235

 Score =  121 bits (305), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 36/129 (27%), Positives = 68/129 (52%), Gaps = 2/129 (1%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I+L INS GG V  G+AIY+ ++  K  ++ +  G AAS+ S++  AG+     +   + 
Sbjct: 50  INLSINSGGGSVFDGIAIYNMLKSHKATVNVYIEGLAASIASVIAMAGDTITMRS--GSM 107

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++H P     G A ++ + A  + K    + +IY +  G + +++   ++ +  +SA E
Sbjct: 108 IMVHMPWTLSQGNAEEMRKTADTLEKTGDSIVDIYSERTGISSDDIRNIMNDETWLSAEE 167

Query: 195 ACDWGVVDK 203
           A + G   K
Sbjct: 168 AVEQGWATK 176


>gi|269102625|ref|ZP_06155322.1| ATP-dependent protease [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268162523|gb|EEZ41019.1| ATP-dependent protease [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 658

 Score =  121 bits (305), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 83/163 (50%), Gaps = 6/163 (3%)

Query: 45  VFVTGQIE-DHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPI 103
           V++ G I    +A      +  L++    +++   I S GG V  G+A+Y+ ++  K   
Sbjct: 22  VWIHGDIGSYEIAA--IDLIKALQSI-GSQDVHFRIQSYGGSVYEGLAMYNAIKAHKGKT 78

Query: 104 STFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKR 163
                G  AS+ S  L A ++       NA++++H P+ G  G   ++E     +   K+
Sbjct: 79  VGIVDGLVASISSYFLMACDEV--HMPENAKLMIHDPAIGAWGGEDELESALTQLKNAKQ 136

Query: 164 RLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
            + E YV+  G++ ++V + + ++   +AS+A ++G++D+V+ 
Sbjct: 137 TIAEAYVERSGQSLDDVLEAMAKETWFTASQALEFGLIDQVID 179


>gi|225573279|ref|ZP_03782034.1| hypothetical protein RUMHYD_01470 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039411|gb|EEG49657.1| hypothetical protein RUMHYD_01470 [Blautia hydrogenotrophica DSM
           10507]
          Length = 223

 Score =  121 bits (305), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 73/163 (44%), Gaps = 3/163 (1%)

Query: 51  IEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQ 110
            E      +  QL   E      +I+++INSPGG   A   IY+ +      ++    G 
Sbjct: 7   EESWFDDDVTPQLFKEELMAGSGDITVWINSPGGDCVAAAQIYNMLMDYPHNVTVKIDGI 66

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYV 170
           AAS  S++  AG +      P + +++H P     G  +++++  + +  +K  +   Y 
Sbjct: 67  AASAASVIAMAGTRV--LVSPVSMMMIHNPMTVAMGDTAEMQKAIEMLGSVKDSIINAYE 124

Query: 171 KNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
              G +  ++   +D +  M A +A + G  D VL SR +I E
Sbjct: 125 IKTGLSRAKLSHLMDAETWMDAGKAVELGFADGVL-SRAEIPE 166


>gi|228987450|ref|ZP_04147569.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228772182|gb|EEM20629.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 240

 Score =  121 bits (305), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 41/142 (28%), Positives = 77/142 (54%), Gaps = 4/142 (2%)

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E  +  + I+LYINSPGG V   MAI   +Q  +  + ++  G  AS  S+L    +K +
Sbjct: 40  ELGDDIETINLYINSPGGSVFETMAIIAMLQRHQAKVISYIDGIGASCASVLPMISDKII 99

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCG--KTYEEVEKTL 184
            +A  N+ +++H      SG A+ + + A DI +I + + + Y+   G     + +++ L
Sbjct: 100 MYA--NSMMMIHNAWTYASGNANQLRKAADDIERINQSMVQHYLTRAGDKLDEDTLKQLL 157

Query: 185 DRDHIMSASEACDWGVVDKVLM 206
           D +  +SA EA ++G+ D+++ 
Sbjct: 158 DAETWLSAEEAMNYGLCDEIIS 179


>gi|296503172|ref|YP_003664872.1| phage protein [Bacillus thuringiensis BMB171]
 gi|296324224|gb|ADH07152.1| phage protein [Bacillus thuringiensis BMB171]
          Length = 260

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 2/132 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           ++ + INSPGG V  G  IY  ++     +    +G AAS  S++  AG+K      P A
Sbjct: 44  DLIVSINSPGGYVHEGSEIYTALKSYPGHVEVQIVGLAASAASVIAMAGDKVR--ISPTA 101

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           +I++H  S    G   D+E+ A+ +    R +   YV   GK+ EE+   +  +  M   
Sbjct: 102 QIMIHNASMWNGGDHRDMEKAAEMLKTTDRAIVNAYVIKSGKSEEELLHMMAEETWMGPQ 161

Query: 194 EACDWGVVDKVL 205
           +A +   VD+++
Sbjct: 162 QALENNFVDEIM 173


>gi|119898161|ref|YP_933374.1| endopeptidase Clp [Azoarcus sp. BH72]
 gi|119670574|emb|CAL94487.1| Endopeptidase Clp [Azoarcus sp. BH72]
          Length = 625

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 42/163 (25%), Positives = 77/163 (47%), Gaps = 7/163 (4%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           R   + G+I D  A  I A+L    A      + + INS GG V AG+ IY+ ++  +P 
Sbjct: 2   RTTEIIGEITDVTAREILAEL----ALAGDSPVVVRINSQGGSVQAGVTIYEALKAHRPS 57

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIK 162
           ++   +G A S  SL+  AG        P + +++H P    +G AS++   A  +  + 
Sbjct: 58  VTVEIVGWALSAASLIAMAGRPVR--MAPTSLLMVHAPWTSATGNASELRDTAAALDAVA 115

Query: 163 RRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           R +   +     +  + ++  L  +H  +A EA   G+ D+++
Sbjct: 116 RSMRAAFS-RTKQPPKTIDAWLTGEHWFTAEEAIAAGLADELI 157


>gi|30263954|ref|NP_846331.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. Ames]
 gi|47778244|ref|YP_020737.2| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49186802|ref|YP_030054.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. Sterne]
 gi|165872161|ref|ZP_02216800.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. A0488]
 gi|167640964|ref|ZP_02399221.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. A0193]
 gi|254683648|ref|ZP_05147508.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. CNEVA-9066]
 gi|254735992|ref|ZP_05193698.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. Western North America USA6153]
 gi|254743884|ref|ZP_05201567.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. Kruger B]
 gi|254754338|ref|ZP_05206373.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. Vollum]
 gi|254757970|ref|ZP_05209997.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. Australia 94]
 gi|30258598|gb|AAP27817.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. Ames]
 gi|47551949|gb|AAT33212.2| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49180729|gb|AAT56105.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. Sterne]
 gi|164712108|gb|EDR17646.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. A0488]
 gi|167511014|gb|EDR86403.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. A0193]
          Length = 251

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 43/141 (30%), Positives = 74/141 (52%), Gaps = 4/141 (2%)

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E  +  K I+LYINSPGG V   MAI   +Q     I ++  G  AS  S+L    +K +
Sbjct: 51  ELGDDIKTINLYINSPGGSVFETMAIIAMLQRHHAKIISYIDGIGASCASVLPMISDKII 110

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCG--KTYEEVEKTL 184
            +A  N+ +++H      SG A  + + A DI +I + + + Y+   G     + +++ L
Sbjct: 111 MYA--NSMMMIHNAWTYASGNADQLRKAADDIERINQSMVQHYLTRAGDKLDEDTLKQLL 168

Query: 185 DRDHIMSASEACDWGVVDKVL 205
           D +  +SA EA  +G+ D+++
Sbjct: 169 DAETWLSAEEAMGYGLCDEII 189


>gi|255646355|gb|ACU23657.1| unknown [Glycine max]
          Length = 124

 Score =  121 bits (304), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 46/109 (42%), Positives = 73/109 (66%)

Query: 26  TNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV 85
           T   E++  + +RL +ER++F+  +++  ++  + + +++L  E   K++ L+INSPGG 
Sbjct: 14  TALKEKNGILINRLYRERLLFLGQEVDSEISNQLISLMVYLSIEEENKDLYLFINSPGGW 73

Query: 86  VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           V  G+AIYDTMQF++P + T CMG AASMGS LL+ GE   R A P+A 
Sbjct: 74  VIPGIAIYDTMQFVQPDVQTVCMGLAASMGSFLLAGGEITKRLAFPHAW 122


>gi|163941505|ref|YP_001646389.1| peptidase S14 ClpP [Bacillus weihenstephanensis KBAB4]
 gi|163863702|gb|ABY44761.1| peptidase S14 ClpP [Bacillus weihenstephanensis KBAB4]
          Length = 247

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 6/158 (3%)

Query: 47  VTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTF 106
           + G   ++ A  +  ++  ++AE    +I ++INS GG    G+AI + ++     I   
Sbjct: 34  IGGWFSENNAEAVRRKIQDVKAE----KIHVHINSGGGSAFDGVAICNLLKQHDAEIIVH 89

Query: 107 CMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLN 166
             G AAS  S++  AG+K       N  +++HQ S    G A   E+ A+D+ KI   L 
Sbjct: 90  IDGWAASAASVIAMAGDKI--VMPSNTMMMIHQASTIEYGNADLFEKTARDLRKIDSALA 147

Query: 167 EIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             Y K    T EE+ + L  +  ++A EA   G+ D++
Sbjct: 148 ASYKKRFVGTDEELRQLLKDETWLTAEEAVALGLADEI 185


>gi|313111246|ref|ZP_07797064.1| ClpP protease [Pseudomonas aeruginosa 39016]
 gi|310883566|gb|EFQ42160.1| ClpP protease [Pseudomonas aeruginosa 39016]
          Length = 296

 Score =  121 bits (303), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 2/142 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L +     ++ + INSPGG V  G+AIY+ ++  K  ++   +G AAS  S +  AG++ 
Sbjct: 71  LRSIGNDVDVIVNINSPGGDVFEGLAIYNLLREHKGKVTVNIIGLAASAASFIAMAGDEI 130

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                  A +++H       G  +D+   A  +      L +IY +  G   +++ K ++
Sbjct: 131 R--IGRAAFLMIHNAWLIAMGNRNDLREIADWLEPFDMTLADIYAQRTGIDLDDIVKQMN 188

Query: 186 RDHIMSASEACDWGVVDKVLMS 207
            +  +   EA D G  D  L S
Sbjct: 189 AETWIGGREAVDKGWADAFLES 210


>gi|330430960|gb|AEC22293.1| peptidase S14 [Pusillimonas sp. T7-7]
          Length = 240

 Score =  121 bits (303), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 69/165 (41%), Gaps = 2/165 (1%)

Query: 42  ERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP 101
           E  +++ G I      +   +     A      I L I+SPGG V A  A+   +   K 
Sbjct: 28  EATIYLHGVIGGWWGDIDETEFAKTLAGIDADTIHLRIDSPGGDVFAARAMMTAISQHKA 87

Query: 102 PISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKI 161
            +     G AAS  + +  A ++        A  ++H       G  +D+ + ++ + KI
Sbjct: 88  KVIAHVDGLAASAATGICMACDEVE--ITQGAGFMIHNAWTIAIGNKADMGKTSELLGKI 145

Query: 162 KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
              L++ Y K  G+  E++   +D +   +A EA + G  D+ + 
Sbjct: 146 DAGLSDDYAKRTGQKSEQITSWMDEETWFTADEAVEHGFADRAVE 190


>gi|61807242|gb|AAX55773.1| hypothetical protein [Clostridium hathewayi]
          Length = 139

 Score =  121 bits (303), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 58/118 (49%), Positives = 86/118 (72%), Gaps = 2/118 (1%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           + LVP V+E T++GERSYD++SRLLK+RI+F+  ++ D  A L  AQ+LFLEAE+P K+I
Sbjct: 1   MSLVPNVIETTSKGERSYDLFSRLLKDRIIFLGEEVNDETARLAVAQMLFLEAEDPSKDI 60

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           S YINSPGG +TAG+AIYDTM++I+  ++   + +AA++  +LL   E+   +   N 
Sbjct: 61  SFYINSPGGSITAGLAIYDTMRYIR--VTYRHLYRAAAVSRILLRRYEETDAYYAENM 116


>gi|330989637|gb|EGH87740.1| peptidase S14 ClpP [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 280

 Score =  121 bits (303), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 38/144 (26%), Positives = 70/144 (48%), Gaps = 3/144 (2%)

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K  ++YINSPGG +  G+AIY+ ++    PI+T  +G AAS  S++  AG K  R    
Sbjct: 66  DKPATVYINSPGGDMFEGLAIYNRLREHSQPITTKVLGLAASAASVIYMAGAK--REVAS 123

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           +  +++H       G   D+   A  + +    + ++Y +  G+   ++ + +D +  + 
Sbjct: 124 SGFLMIHNCWTLAVGNRHDLRDVANTMEEFDAAMADLYAEGSGQAVADIAEMMDDETFIR 183

Query: 192 ASEACDWGVVDKVLMSRIDIEEKS 215
              A + G    VL S  +I E+ 
Sbjct: 184 GRRAVELGFATAVLSS-DEITERE 206


>gi|65321281|ref|ZP_00394240.1| COG0740: Protease subunit of ATP-dependent Clp proteases [Bacillus
           anthracis str. A2012]
 gi|167633728|ref|ZP_02392052.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. A0442]
 gi|170688767|ref|ZP_02879971.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. A0465]
 gi|170705747|ref|ZP_02896210.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. A0389]
 gi|177654334|ref|ZP_02936263.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. A0174]
 gi|190566076|ref|ZP_03018995.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis Tsiankovskii-I]
 gi|227813139|ref|YP_002813148.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. CDC 684]
 gi|229601615|ref|YP_002868186.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. A0248]
 gi|167531134|gb|EDR93821.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. A0442]
 gi|170129287|gb|EDS98151.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. A0389]
 gi|170667283|gb|EDT18042.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. A0465]
 gi|172080824|gb|EDT65905.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. A0174]
 gi|190562995|gb|EDV16961.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis Tsiankovskii-I]
 gi|227002833|gb|ACP12576.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. CDC 684]
 gi|229266023|gb|ACQ47660.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. A0248]
          Length = 240

 Score =  121 bits (303), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 44/141 (31%), Positives = 75/141 (53%), Gaps = 4/141 (2%)

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E  +  K I+LYINSPGG V   MAI   +Q     I ++  G  AS  S+L    +K +
Sbjct: 40  ELGDDIKTINLYINSPGGSVFETMAIIAMLQRHHAKIISYIDGIGASCASVLPMISDKII 99

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE--VEKTL 184
            +A  N+ +++H      SG A  + + A DI +I + + + Y+   G   +E  +++ L
Sbjct: 100 MYA--NSMMMIHNAWTYASGNADQLRKAADDIERINQSMVQHYLTRAGDKLDEDTLKQLL 157

Query: 185 DRDHIMSASEACDWGVVDKVL 205
           D +  +SA EA  +G+ D+++
Sbjct: 158 DAETWLSAEEAMGYGLCDEII 178


>gi|254298353|ref|ZP_04965805.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei 406e]
 gi|157808321|gb|EDO85491.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei 406e]
          Length = 366

 Score =  121 bits (303), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 5/156 (3%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMG 115
           A    +QL  + A+     I++ INS GG V    AIY+ ++     +     G AAS  
Sbjct: 37  AQNFVSQLDVVAADASS--ITVAINSMGGDVFDAFAIYNALRRHAGKVKGRVDGIAASAA 94

Query: 116 SLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK 175
           SL+L A ++       NA +++H P    +G++ D+ R A+ +      +   Y +  G 
Sbjct: 95  SLVLMACDEIE--MPENALLMIHHPHTVAAGESKDLRRVAELLDNASAGILAAYAQRSGL 152

Query: 176 TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           + ++V   +D +  ++A++A + G  D V+ + + +
Sbjct: 153 SEDDVRAMMDAETWLTAAQAKEKGFCD-VIEAPVKL 187


>gi|257899073|ref|ZP_05678726.1| serine protease [Enterococcus faecium Com15]
 gi|257836985|gb|EEV62059.1| serine protease [Enterococcus faecium Com15]
          Length = 241

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 77/153 (50%), Gaps = 4/153 (2%)

Query: 54  HMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAAS 113
              T   +    L+      +I+L+INSPGG V  G+AI + ++  K  +       AAS
Sbjct: 31  DTDTTAASFQKDLKELGEVSQINLHINSPGGSVFEGIAIGNMLRQHKARVVAHVDALAAS 90

Query: 114 MGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC 173
           + S+++++ ++       N+ +++H P     G A ++ + A D+ KI       Y+   
Sbjct: 91  IASVIVASCDEV--IMPENSMLMIHNPWTISMGNAKELRKQADDLDKIAESSVVTYLAKA 148

Query: 174 G--KTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           G   T E++++ +D +  MSA EA ++G+ D V
Sbjct: 149 GEKLTEEKIKQIMDEETWMSAQEAYNYGLCDVV 181


>gi|332174255|gb|AEE23509.1| peptidase S14 ClpP [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 241

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 2/146 (1%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I A+    E    +  I ++INS GGVVT G+AIY+ ++      +      AASM S
Sbjct: 25  DGITAKKFKDELNKQRGAIEVHINSAGGVVTEGIAIYNALKAYTGKKTVIIDSLAASMAS 84

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
           ++  AG+  +     N  +++H P G  SGQA++  + A  +  +K  +   Y+      
Sbjct: 85  VIAMAGD--VVQMPSNGLMMIHNPWGVSSGQATEHRKTADLLDVMKDAMLAAYMLKTNLD 142

Query: 177 YEEVEKTLDRDHIMSASEACDWGVVD 202
             ++ + +D +  M+  +    G +D
Sbjct: 143 EAQLSELMDGETWMNGEDCLKLGFID 168


>gi|228955763|ref|ZP_04117752.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228803918|gb|EEM50548.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
          Length = 234

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 2/135 (1%)

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
             +++ + INSPGG V  G  IY  ++     +    +G AAS  S++  AG+K      
Sbjct: 17  NSEDLIVSINSPGGYVDEGSEIYTALKNYPGHVEVQIVGLAASAASVIAMAGDKVR--IS 74

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           P A+I++H  +    G   D+E+ A+ +    R +   YV   GK+ EE+   +  +  M
Sbjct: 75  PTAKIMIHNAAKWHGGDHRDMEKAAEMLKITDRAIVNAYVIKSGKSEEELLNMMAEETWM 134

Query: 191 SASEACDWGVVDKVL 205
              +A +    D+++
Sbjct: 135 GPQQALENNFADEIM 149


>gi|326941533|gb|AEA17429.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 258

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 75/165 (45%), Gaps = 6/165 (3%)

Query: 41  KERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
            E  ++   +++      I  QL    +E    ++ + INSPGG V  G  IY  ++   
Sbjct: 15  DEAWIYDWFEMDATSPGKITKQLDNANSE----DLIVSINSPGGYVDEGSEIYTALKNYP 70

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
             +    +G AAS  S++  AG+K      P A+I++H  +    G   D+E+ A+ +  
Sbjct: 71  GHVEVQIVGLAASAASVIAMAGDKVR--ISPTAKIMIHNAAKWHGGDHRDMEKAAEMLKI 128

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
             R +   YV   GK+ EE+   +  +  M   +A +    D+++
Sbjct: 129 TDRAIVNAYVIKSGKSEEELLNMMAEETWMGPQQALENNFADEIM 173


>gi|134300444|ref|YP_001113940.1| peptidase S14, ClpP [Desulfotomaculum reducens MI-1]
 gi|134053144|gb|ABO51115.1| peptidase S14, ClpP [Desulfotomaculum reducens MI-1]
          Length = 258

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 75/153 (49%), Gaps = 4/153 (2%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L      KEI ++INS GG V  G AIY  ++      + +  G A S+ S++  AG++ 
Sbjct: 50  LAKYPDVKEIKIFINSYGGSVFEGTAIYSQLRRHPAQKTVYIDGFACSVASVIAMAGDRV 109

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC-GK-TYEEVEKT 183
                 N  +++H      +G A+ + + A D+  I     + Y++   GK T E++ + 
Sbjct: 110 --IMPKNTMMMIHNAWNIVAGNATQLRKAADDLDTIMAGNRQSYLQKSNGKITEEKLIEL 167

Query: 184 LDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           LD +  ++A +  ++G  D++L    D+ E  +
Sbjct: 168 LDAETWLTAEQCIEYGFADELLEKDADLTEAKQ 200


>gi|297583106|ref|YP_003698886.1| peptidase S14 ClpP [Bacillus selenitireducens MLS10]
 gi|297141563|gb|ADH98320.1| peptidase S14 ClpP [Bacillus selenitireducens MLS10]
          Length = 226

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 81/187 (43%), Gaps = 4/187 (2%)

Query: 31  RSYDIYSRLLKERIVFVTG--QIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTA 88
           R++  +      R + + G    E      +       +    + +I+++INSPGG V A
Sbjct: 2   RTFWNWENREDGRTLHLDGVIAEETWFGDEVTPAAFKEDLMADKGDITVWINSPGGDVFA 61

Query: 89  GMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQA 148
              IY+ +      ++    G AAS  S++  AG K      P + +++H P     G +
Sbjct: 62  ASQIYNMLMEYPGQVTVKIDGVAASAASVIAMAGTKV--LMSPVSMMMIHNPMTMAIGDS 119

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           S+++R  + + ++K  +   Y          + K +D +   +A +A + G  D+VL + 
Sbjct: 120 SEMKRAMEMLREVKESIMNAYELRTELPRTRLAKLMDDESWFNAKKAVELGFADEVLFTG 179

Query: 209 IDIEEKS 215
            +  E +
Sbjct: 180 EESPEPA 186


>gi|237803723|ref|ZP_04591308.1| peptidase S14 ClpP [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331025705|gb|EGI05761.1| peptidase S14 ClpP [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 280

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/144 (26%), Positives = 70/144 (48%), Gaps = 3/144 (2%)

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K  ++YINSPGG +  G+AIY+ ++    PI+T  +G AAS  S++  AG K  R    
Sbjct: 66  DKPATVYINSPGGDMFEGLAIYNRLREHSQPITTKVLGLAASAASVIYMAGAK--REVAS 123

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           +  +++H       G   D+   A  + +    + ++Y +  G+   ++ + +D +  + 
Sbjct: 124 SGFLMIHNCWTLAVGNRHDLRDVANTMEEFDAAMADLYAEGSGQAVADIAEMMDDETFIR 183

Query: 192 ASEACDWGVVDKVLMSRIDIEEKS 215
              A + G    VL S  +I E+ 
Sbjct: 184 GRRAVELGFATAVLSS-DEITERE 206


>gi|330817608|ref|YP_004361313.1| hypothetical protein bgla_1g27400 [Burkholderia gladioli BSR3]
 gi|327370001|gb|AEA61357.1| hypothetical protein bgla_1g27400 [Burkholderia gladioli BSR3]
          Length = 366

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 6/162 (3%)

Query: 45  VFVTGQIEDH--MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           + + G I      A    A+L   E       I + +NS GG V     IY+ ++     
Sbjct: 24  IRIYGDIGFWGTDAEQFAARL--DEVGPSAASIVVAVNSMGGDVFDAFTIYNLLRRYPGK 81

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIK 162
            +    G AAS  SLLL    +       NA +++H P    +G   ++ R A  +    
Sbjct: 82  TTGRVDGIAASAASLLLMGCSQI--VMPSNAMLMIHNPHTLAAGDEGELRRLADLLGSTS 139

Query: 163 RRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             +   Y +  G+T + V + +D +  ++A++A + G  D +
Sbjct: 140 ANMLTAYAERSGQTEDTVRELMDAETWLTAAQAVELGFCDTI 181


>gi|261209157|ref|ZP_05923553.1| serine protease [Enterococcus faecium TC 6]
 gi|289566715|ref|ZP_06447130.1| serine protease [Enterococcus faecium D344SRF]
 gi|260076870|gb|EEW64601.1| serine protease [Enterococcus faecium TC 6]
 gi|289161485|gb|EFD09370.1| serine protease [Enterococcus faecium D344SRF]
          Length = 241

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 77/153 (50%), Gaps = 4/153 (2%)

Query: 54  HMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAAS 113
              T   +    L+      +I+L+INSPGG V  G+AI + ++  K  +       AAS
Sbjct: 31  DTDTTAASFQKDLKELGEVSQINLHINSPGGSVFEGIAIGNMLRQHKARVVAHVDALAAS 90

Query: 114 MGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC 173
           + S+++++ ++       N+ +++H P     G A ++ + A D+ KI       Y+   
Sbjct: 91  IASVIVASCDEV--IMPENSMLMIHNPWTISMGNAKELRKQADDLDKIAESSVVTYLAKA 148

Query: 174 G--KTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           G   T E++++ +D +  MSA EA ++G+ D V
Sbjct: 149 GEKLTEEKIKQIMDEETWMSAQEAYNYGLCDVV 181


>gi|157362829|ref|YP_001471688.1| peptidase S14 ClpP [Serratia proteamaculans 568]
 gi|157324916|gb|ABV44012.1| peptidase S14 ClpP [Serratia proteamaculans 568]
          Length = 365

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 48/157 (30%), Positives = 80/157 (50%), Gaps = 8/157 (5%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM 108
           G+ +D  +  +  QL  + +    KEI + INS GG V    AI  T++     ++ F  
Sbjct: 31  GEWDDVNSRDVATQLKAVTS----KEIHVKINSYGGSVFTAQAILSTLKRHTAAVTVFID 86

Query: 109 GQAASMGSLLLSAGEKGMRFALP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNE 167
           G AAS  +++  AGE   R  +P NA +++H P     G A+D   +A  + +I+  +  
Sbjct: 87  GIAASAATIIAMAGE---RVVIPSNAMMMIHNPLTWADGNAADFREYADMLDRIRDSIIA 143

Query: 168 IYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            Y      T+E++ + +D +  MSA+EA D G  D+V
Sbjct: 144 AYQSKTSLTHEKLVELMDAETWMSATEAVDLGFADEV 180


>gi|84391274|ref|ZP_00991605.1| ATP-dependent protease [Vibrio splendidus 12B01]
 gi|84376563|gb|EAP93441.1| ATP-dependent protease [Vibrio splendidus 12B01]
          Length = 670

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 6/151 (3%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMG 115
           AT I A L         KE+ L + S GG V  G+A+Y+ ++  K  +     G AAS+ 
Sbjct: 33  ATEIIAALQV----ANGKEVELRMLSGGGSVYQGLAMYNALKAHKGKVVGIVDGMAASIA 88

Query: 116 SLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK 175
           + +L A +        NA +++H P+ G  G   +I    Q +    + ++E Y +  G+
Sbjct: 89  TYVLLACDSIR--MPENAMLMIHNPAIGAWGGEKEINSALQQLQAATKTISEAYAEKSGQ 146

Query: 176 TYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             EEV   ++ +   +A  A DWG+VD+V+ 
Sbjct: 147 PLEEVLTAMESETWFTAQAAKDWGLVDEVVE 177


>gi|218898920|ref|YP_002447331.1| Clp protease [Bacillus cereus G9842]
 gi|218544430|gb|ACK96824.1| Clp protease [Bacillus cereus G9842]
          Length = 247

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 80/159 (50%), Gaps = 8/159 (5%)

Query: 47  VTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTF 106
           + G   ++ A  +  ++  ++AE    +I ++INS GG    G+AI + ++     I   
Sbjct: 35  IGGWFSENNAEAVRRKIQDVKAE----KIHVHINSGGGSAFDGVAICNQLKQHSAEIIVH 90

Query: 107 CMGQAASMGSLLLSAGEKGMRFALP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRL 165
             G AAS  S++  AG+   R  +P N  +++HQ S    G A   E+ A+D+ KI   L
Sbjct: 91  IDGWAASAASVIAMAGD---RIIMPSNTMMMIHQASTFEYGNADLFEKTARDLRKIDSAL 147

Query: 166 NEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
              Y K    T EE+++ L  +  ++A EA   G+ D++
Sbjct: 148 AGSYKKRFVGTDEELKQLLKDETWLTAEEAVALGLADEI 186


>gi|229110059|ref|ZP_04239636.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock1-15]
 gi|228673412|gb|EEL28679.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock1-15]
          Length = 234

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 2/135 (1%)

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
             +++ + INSPGG V  G  IY  ++     +    +G AAS  S++  AG+K      
Sbjct: 17  NSEDLIVSINSPGGYVDEGSEIYTALKNYPGHVEVQIVGLAASAASVIAMAGDKVR--IS 74

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           P A+I++H  +    G   D+E+ A+ +    R +   YV   GK+ EE+   +  +  M
Sbjct: 75  PTAKIMIHNAAKWHGGDHRDMEKAAEMLKITDRAIVNAYVIKSGKSEEELLNMMAEETWM 134

Query: 191 SASEACDWGVVDKVL 205
              +A +    D+++
Sbjct: 135 GPQQALENNFADEIM 149


>gi|228960167|ref|ZP_04121825.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228799517|gb|EEM46476.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 240

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/142 (29%), Positives = 77/142 (54%), Gaps = 4/142 (2%)

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E  +  + I+LYINSPGG V   MAI   +Q  +  + ++  G  AS  S+L    +K +
Sbjct: 40  ELGDDIETINLYINSPGGSVFETMAIIAMLQRHQAKVISYIDGIGASCASVLPMISDKII 99

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE--VEKTL 184
            +A  N+ +++H      SG A  + + A DI +I + + + Y+   G+  +E  +++ L
Sbjct: 100 MYA--NSMMMIHNAWTYASGNADQLRKAADDIERINQSMVQHYLTRAGEKLDEDTLKQLL 157

Query: 185 DRDHIMSASEACDWGVVDKVLM 206
           D +  +SA EA  +G+ D+++ 
Sbjct: 158 DAETWLSAEEAMGYGLCDEIIS 179


>gi|228942974|ref|ZP_04105481.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228976599|ref|ZP_04137044.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228980374|ref|ZP_04140684.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis Bt407]
 gi|228779194|gb|EEM27451.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis Bt407]
 gi|228783116|gb|EEM31250.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228816700|gb|EEM62818.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar berliner ATCC 10792]
          Length = 234

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 2/135 (1%)

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
             +++ + INSPGG V  G  IY  ++     +    +G AAS  S++  AG+K      
Sbjct: 17  NSEDLIVSINSPGGYVDEGSEIYTALKNYPGHVEVQIVGLAASAASVIAMAGDKVR--IS 74

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           P A+I++H  +    G   D+E+ A+ +    R +   YV   GK+ EE+   +  +  M
Sbjct: 75  PTAKIMIHNAAKWHGGDHRDMEKAAEMLKITDRAIVNAYVIKSGKSEEELLNMMAEETWM 134

Query: 191 SASEACDWGVVDKVL 205
              +A +    D+++
Sbjct: 135 GPQQALENNFADEIM 149


>gi|217973756|ref|YP_002358507.1| peptidase S14 ClpP [Shewanella baltica OS223]
 gi|217498891|gb|ACK47084.1| peptidase S14 ClpP [Shewanella baltica OS223]
          Length = 284

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 69/136 (50%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L +    K++++YINSPGG +  G+AIY+ +   K  ++T  +G AAS  S++  AG   
Sbjct: 63  LRSIGADKDVTVYINSPGGDMFEGIAIYNRLLEHKGKVTTKVLGLAASAASVIYMAGADD 122

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
            RF   +A +++H       G    +   A D+ +    + ++YV+  G++ + +   +D
Sbjct: 123 ARFVASSAFLMIHNCWVFAIGNRHALRNIADDMEEFDAAMVDLYVEGSGQSEKAIATMMD 182

Query: 186 RDHIMSASEACDWGVV 201
            +  +   +A + G  
Sbjct: 183 EETFIRGKKAVELGFA 198


>gi|330954018|gb|EGH54278.1| peptidase S14 ClpP [Pseudomonas syringae Cit 7]
          Length = 287

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/144 (26%), Positives = 70/144 (48%), Gaps = 3/144 (2%)

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K  ++YINSPGG +  G+AIY+ ++    PI+T  +G AAS  S++  AG K  R    
Sbjct: 66  DKPATVYINSPGGDMFEGLAIYNRLREHSQPITTKVLGLAASAASVIYMAGAK--REVAS 123

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           +  +++H       G   D+   A  + +    + ++Y +  G+   ++ + +D +  + 
Sbjct: 124 SGFLMIHNCWTLAVGNRHDLRDVANTMEEFDAAMADLYAEGSGQAVADIAEMMDDETFIR 183

Query: 192 ASEACDWGVVDKVLMSRIDIEEKS 215
              A + G    VL S  +I E+ 
Sbjct: 184 GRRAVELGFATAVLSS-DEITERE 206


>gi|218550008|ref|YP_002383799.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
           of prophage [Escherichia fergusonii ATCC 35469]
 gi|218357549|emb|CAQ90188.1| putative ATP-dependent Clp protease proteolytic subunit
           (Endopeptidase Clp) of prophage [Escherichia fergusonii
           ATCC 35469]
          Length = 757

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/128 (31%), Positives = 69/128 (53%), Gaps = 1/128 (0%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I L+I+SPGG V  G AI++T+  +K  +  +  G AASM S+++      +     NA 
Sbjct: 140 IDLHIHSPGGDVMQGFAIFNTLSRLKAKVDIWVDGVAASMASMIVCLPGATV-HMPENAW 198

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           I++H+P GG +G + D+  +A  + + +  +   Y+   G   EE+E  L  +  +S +E
Sbjct: 199 IMVHKPWGGIAGDSDDMRDYADWLDRNEALMLSAYMNKTGLGQEELEAMLKSETWLSGAE 258

Query: 195 ACDWGVVD 202
           A + G  D
Sbjct: 259 AVEKGFAD 266


>gi|256617098|ref|ZP_05473944.1| peptidase S14 [Enterococcus faecalis ATCC 4200]
 gi|256596625|gb|EEU15801.1| peptidase S14 [Enterococcus faecalis ATCC 4200]
          Length = 198

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 2/136 (1%)

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
            + +  I+++INSPGG   A   IY+ ++     ++    G AAS  S++  AG+K    
Sbjct: 1   MSGEGNITVWINSPGGDCVAAAQIYNMLKEYSGDVTIKIDGLAASAASVIAMAGDKV--V 58

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
             P A +++H PS    G   D+++    + ++K  +   Y    G +  ++   +D + 
Sbjct: 59  MSPVAMMMIHNPSTVAFGDRVDMQKAMAMLDEVKESIINAYEIKTGMSRTKLAHMMDAET 118

Query: 189 IMSASEACDWGVVDKV 204
            M A  A D G  D V
Sbjct: 119 WMDARSAVDLGFADDV 134


>gi|254721484|ref|ZP_05183273.1| prophage LambdaBa02, Clp protease family protein [Bacillus
           anthracis str. A1055]
          Length = 251

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 42/141 (29%), Positives = 74/141 (52%), Gaps = 4/141 (2%)

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E  +  + I+LYINSPGG V   MAI   +Q     I ++  G  AS  S+L    +K +
Sbjct: 51  ELGDDIETINLYINSPGGSVFETMAIIAMLQRHHAKIISYIDGIGASCASVLPMISDKII 110

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCG--KTYEEVEKTL 184
            +A  N+ +++H      SG A  + + A DI +I + + + Y+   G     + +++ L
Sbjct: 111 MYA--NSMMMIHNAWTYASGNADQLRKAADDIERINQSMVQHYLTRAGDKLDEDTLKQLL 168

Query: 185 DRDHIMSASEACDWGVVDKVL 205
           D +  +SA EA  +G+ D+++
Sbjct: 169 DAETWLSAEEAMGYGLCDEII 189


>gi|160946055|ref|ZP_02093275.1| hypothetical protein PEPMIC_00010 [Parvimonas micra ATCC 33270]
 gi|158447859|gb|EDP24854.1| hypothetical protein PEPMIC_00010 [Parvimonas micra ATCC 33270]
          Length = 170

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 65/123 (52%), Gaps = 4/123 (3%)

Query: 86  VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS 145
           +  G+AI + ++  K  ++ +  G AAS+ S++  +G+    F   NA +++H P     
Sbjct: 1   MFDGIAIGNMIKQHKAQVNCYIDGVAASIASVIAMSGDAI--FMPSNAMLMVHNPWSFAY 58

Query: 146 GQASDIERHAQDIVKIKRRLNEIYVKNCG--KTYEEVEKTLDRDHIMSASEACDWGVVDK 203
           G ASD  + A ++  I   + + Y++  G     E + + +D +  MSA EA ++G+ D+
Sbjct: 59  GNASDFRKQADNLDHIADSIKQTYLEKAGDKLDLETITQLMDAETWMSAQEAFEYGLCDQ 118

Query: 204 VLM 206
           VL 
Sbjct: 119 VLS 121


>gi|255033736|ref|YP_003090180.1| protease/scaffold protein gp4 [Burkholderia phage KS9]
 gi|254832774|gb|ACT83017.1| protease/scaffold protein gp4 [Burkholderia phage KS9]
          Length = 251

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 63/154 (40%), Gaps = 3/154 (1%)

Query: 51  IEDHMATLICAQLLFLEAENPQKE-ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMG 109
           + D     + AQ           + I L INSPGG V A  A+   ++     +     G
Sbjct: 19  VTDEWWGGVSAQSFVQALAGITADTIHLRINSPGGDVFAARAMETAIRGHSARVIAHVDG 78

Query: 110 QAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIY 169
            AAS  S ++ A ++        A +++H       G A D+   A+ +  +   L   Y
Sbjct: 79  VAASAASFVMLAADEVE--ITDGAFVMIHNAWTFAMGNADDLRESAKLLDAVDASLVRTY 136

Query: 170 VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            K  G++ +++   +  +  MS+ EA   G  D+
Sbjct: 137 AKETGQSEDDISAWMAAETWMSSDEAVQRGFADR 170


>gi|228922537|ref|ZP_04085838.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228837132|gb|EEM82472.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 233

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 2/132 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           ++ + INSPGG V  G  IY  ++     +    +G AAS  S++  AG+K      P A
Sbjct: 20  DLIVSINSPGGYVHEGSEIYTALKNYPGNVEVQIVGLAASAASVIAMAGDKVR--ISPTA 77

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           +I++H  S    G   D+E+ A+ +    R +   YV   GK+ +E+   +  +  M   
Sbjct: 78  QIMIHNASMWNGGDHRDMEKAAEMLKTTDRAIVNAYVIKSGKSEKELLNMMAEETWMGPQ 137

Query: 194 EACDWGVVDKVL 205
           +A +   VD+++
Sbjct: 138 QALENNFVDEIM 149


>gi|224823664|ref|ZP_03696773.1| peptidase S14 ClpP [Lutiella nitroferrum 2002]
 gi|224604119|gb|EEG10293.1| peptidase S14 ClpP [Lutiella nitroferrum 2002]
          Length = 238

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 64/158 (40%), Gaps = 7/158 (4%)

Query: 47  VTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTF 106
           + G      A  +        A      I L+INSPGG V    A+   ++     +   
Sbjct: 40  IGGWWGITAADFV-----KDLAAITAPTIRLHINSPGGDVFDARAMATAIRNHPSKVVAQ 94

Query: 107 CMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLN 166
             G AAS  + +  + ++           ++H+      G A ++   A  + KI   ++
Sbjct: 95  IDGLAASAATYVALSADEVE--IADGGFFMIHRAWTLAMGNAGELRDTANLLDKIDASIS 152

Query: 167 EIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             Y +  G++ E+++  +  +   +A EA D G VD++
Sbjct: 153 ADYQRKTGESAEQIDAWMGAETWFTAQEALDHGFVDRI 190


>gi|167824886|ref|ZP_02456357.1| peptidase S14, ClpP [Burkholderia pseudomallei 9]
 gi|226198878|ref|ZP_03794441.1| peptidase S14, ClpP [Burkholderia pseudomallei Pakistan 9]
 gi|225928978|gb|EEH25002.1| peptidase S14, ClpP [Burkholderia pseudomallei Pakistan 9]
          Length = 364

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 87/188 (46%), Gaps = 9/188 (4%)

Query: 28  RGERSYDIYSRLL--KERIVFVTGQIEDH--MATLICAQLLFLEAENPQKEISLYINSPG 83
           R  + +DI ++    K   + +   I      A    +QL  + A+     I++ INS G
Sbjct: 3   RNRKWWDIRAQAGGGKVAEIRIYSDIGFWGTDAQNFVSQLDAVAADASS--ITVAINSMG 60

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           G V    AIY+ ++     +     G AAS  SL+L A ++       NA +++H P   
Sbjct: 61  GDVFDAFAIYNALRRYAGKVKGRVDGIAASAASLVLMACDEIE--MPENALLMIHHPHTV 118

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            +G++ D+ R A+ +      +   Y +  G + ++V   +D +  ++A++A + G  D 
Sbjct: 119 AAGESKDLRRVAELLDNASAGILAAYAQRSGLSEDDVRAMMDAETWLTAAQAKEKGFCD- 177

Query: 204 VLMSRIDI 211
           V+ + + +
Sbjct: 178 VIEAPVKL 185


>gi|168204793|ref|ZP_02630798.1| phage protein [Clostridium perfringens E str. JGS1987]
 gi|170663602|gb|EDT16285.1| phage protein [Clostridium perfringens E str. JGS1987]
          Length = 672

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 69/138 (50%), Gaps = 3/138 (2%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           +++++ INSPGG + A   IY  ++  K  I     G AAS  S++  AG        P 
Sbjct: 42  EKLTIKINSPGGDIFAASDIYTELREYKGEIEIKITGMAASAASVIAMAG---KSSMSPT 98

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A++++H  S G  G   D+E  A+ +      +   Y+   G + EE  + ++ +  +SA
Sbjct: 99  AQLMVHNVSTGTWGDYRDMEHTAEVLKNANDTIANAYMCKTGMSREEALELMNNETYLSA 158

Query: 193 SEACDWGVVDKVLMSRID 210
           ++A + G +D+++    +
Sbjct: 159 TKAKELGFIDEIMFEESN 176


>gi|167619474|ref|ZP_02388105.1| peptidase S14, ClpP [Burkholderia thailandensis Bt4]
          Length = 366

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 5/156 (3%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMG 115
           A    +QL  + A+     I++ INS GG V    AIY+ ++     +     G AAS  
Sbjct: 37  AQNFVSQLDAVAADASS--ITVAINSMGGDVFDAFAIYNALRRYAGKVKGRVDGIAASAA 94

Query: 116 SLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK 175
           SL+L A ++       NA +++H P    +G++ D+ R A+ +      +   Y +  G 
Sbjct: 95  SLVLMACDEIE--MPENALLMIHHPHTVAAGESKDLRRVAELLDNASAGILAAYAQRSGL 152

Query: 176 TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           + ++V   +D +  ++A++A + G  D V+ + + +
Sbjct: 153 SEDDVRAMMDAETWLTAAQAKEKGFCD-VIEAPVKL 187


>gi|237812956|ref|YP_002897407.1| peptidase S14, ClpP [Burkholderia pseudomallei MSHR346]
 gi|237505260|gb|ACQ97578.1| peptidase S14, ClpP [Burkholderia pseudomallei MSHR346]
          Length = 366

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 5/156 (3%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMG 115
           A    +QL  + A+     I++ INS GG V    AIY+ ++     +     G AAS  
Sbjct: 37  AQNFVSQLDAVAADASS--ITVAINSMGGDVFDAFAIYNALRRYAGKVKGRVDGIAASAA 94

Query: 116 SLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK 175
           SL+L A ++       NA +++H P    +G++ D+ R A+ +      +   Y +  G 
Sbjct: 95  SLVLMACDEIE--MPENALLMIHHPHTVAAGESKDLRRVAELLDNASAGILAAYARRSGL 152

Query: 176 TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           + ++V   +D +  ++A++A + G  D V+ + + +
Sbjct: 153 SEDDVRAMMDAETWLTAAQAKEKGFCD-VIEAPVKL 187


>gi|167744552|ref|ZP_02417326.1| peptidase S14, ClpP [Burkholderia pseudomallei 14]
          Length = 366

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 5/156 (3%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMG 115
           A    +QL  + A+     I++ INS GG V    AIY+ ++     +     G AAS  
Sbjct: 37  AQNFVSQLDAVAADASS--ITVAINSMGGDVFDAFAIYNALRRYAGKVKGRVDGIAASAA 94

Query: 116 SLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK 175
           SL+L A ++       NA +++H P    +G++ D+ R A+ +      +   Y +  G 
Sbjct: 95  SLVLMACDEIE--MPENALLMIHHPHTVAAGESKDLRRVAELLDNASAGILAAYAQRSGL 152

Query: 176 TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           + ++V   +D +  ++A++A + G  D V+ + + +
Sbjct: 153 SEDDVRAMMDAETWLTAAQAKEKGFCD-VIEAPVKL 187


>gi|227485897|ref|ZP_03916213.1| peptidase S14, ClpP [Anaerococcus lactolyticus ATCC 51172]
 gi|227236130|gb|EEI86145.1| peptidase S14, ClpP [Anaerococcus lactolyticus ATCC 51172]
          Length = 380

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 5/167 (2%)

Query: 47  VTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTF 106
           +  ++ +       + L +LE E+    I + INS GG V A  AIY  ++  K      
Sbjct: 32  IDWELGEINPEFFSSDLAYLEQEDINTLI-IRINSAGGDVFAATAIYSRLKEFKAKKIVK 90

Query: 107 CMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG--QASDIERHAQDIVKIKRR 164
             G AAS  +++  AG++      PN  +++H P  G  G   A D+ ++ + +  IK+ 
Sbjct: 91  IDGWAASAATIIAMAGDEIE--IAPNGSLMIHDPLFGLEGYFNAKDLIKYIEQLETIKKS 148

Query: 165 LNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           +   Y    GKT EE+ + ++ +   +  EA D G  D+++    D+
Sbjct: 149 IINAYKTKTGKTEEELAQLMEAETWYTGQEAVDAGFCDRLMFEEADV 195


>gi|325115097|emb|CBZ50653.1| atp-dependent Clp protease proteolytic subunit,related [Neospora
           caninum Liverpool]
          Length = 291

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 46/154 (29%), Positives = 77/154 (50%), Gaps = 22/154 (14%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
            + + INSPGG VTA + I D  Q +   + T C+GQAA + ++LL+AG  G R A P++
Sbjct: 121 PVDILINSPGGSVTAALGILDLFQSLPFDVHTTCVGQAAGVAAMLLAAGTPGCRRAFPSS 180

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKN-CGK----------------- 175
           R+ L Q  G   GQA  I+R   +I  ++R +         G+                 
Sbjct: 181 RLSLRQIEGRVEGQAEAIDRETLEIENVQRMVYRHLAAFCTGRQARRDEREQEREQERER 240

Query: 176 TYEE----VEKTLDRDHIMSASEACDWGVVDKVL 205
             E+    + +  +++  +SA EA  +G++D+V+
Sbjct: 241 QIEKREKAIREDCEKELFLSAGEAVKYGLIDRVI 274


>gi|228905162|ref|ZP_04069169.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis IBL 4222]
 gi|228854484|gb|EEM99135.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis IBL 4222]
          Length = 233

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 2/132 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           ++ + INSPGG V  G  IY  ++     +    +G AAS  S++  AG+K      P A
Sbjct: 20  DLIVSINSPGGYVHEGSEIYTALKNYPGNVEVQIVGLAASAASVIAMAGDKVQ--ISPTA 77

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           +I++H  S    G   D+E+ A+ +    R +   YV   GK+ +E+   +  +  M   
Sbjct: 78  QIMIHNASMWNGGDHRDMEKAAEMLKTTDRAIVNAYVIKSGKSEKELLNMMAEETWMGPQ 137

Query: 194 EACDWGVVDKVL 205
           +A +   VD+++
Sbjct: 138 QALENNFVDEIM 149


>gi|167725633|ref|ZP_02408869.1| peptidase S14, ClpP [Burkholderia pseudomallei DM98]
          Length = 366

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 5/156 (3%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMG 115
           A    +QL  + A+     I++ INS GG V    AIY+ ++     +     G AAS  
Sbjct: 37  AQNFVSQLDAVAADASS--ITVAINSMGGDVFDAFAIYNALRRYAGKVKGRVDGIAASAA 94

Query: 116 SLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK 175
           SL+L A ++       NA +++H P    +G++ D+ R A+ +      +   Y +  G 
Sbjct: 95  SLVLMACDEIE--MPENALLMIHHPHTVAAGESKDLRRVAELLDNASAGILAAYAQRSGL 152

Query: 176 TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           + ++V   +D +  ++A++A + G  D V+ + + +
Sbjct: 153 SEDDVRAMMDAETWLTAAQAKEKGFCD-VIETPVKL 187


>gi|121603870|ref|YP_981199.1| peptidase S14, ClpP [Polaromonas naphthalenivorans CJ2]
 gi|120592839|gb|ABM36278.1| ATP-dependent Clp protease proteolytic subunit ClpP [Polaromonas
           naphthalenivorans CJ2]
          Length = 641

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 75/153 (49%), Gaps = 7/153 (4%)

Query: 55  MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASM 114
            A  I +QL +++       + + INS GG V+  +AIY+ ++  K  ++   +G A S 
Sbjct: 17  TAENIRSQLSYID---DATPLIVEINSEGGSVSEAVAIYNLLRTWKGGVTVEIVGWALSA 73

Query: 115 GSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCG 174
            +++  AG++    A   + I++H P    SG A  +  +A  + ++   +   Y     
Sbjct: 74  ATVIAMAGQRIKAHAT--SLIMVHAPWTNASGNAGAMRENAALLDQVALTMQAAYA-RTR 130

Query: 175 KTYEEVEKTLD-RDHIMSASEACDWGVVDKVLM 206
           +  + +   +D +DH  +A EA   G+VD+++ 
Sbjct: 131 QPAKTLAAWMDGQDHWFTAQEALALGLVDEIIS 163


>gi|254245318|ref|ZP_04938639.1| Protease subunit of ATP-dependent Clp proteases [Burkholderia
           cenocepacia PC184]
 gi|124870094|gb|EAY61810.1| Protease subunit of ATP-dependent Clp proteases [Burkholderia
           cenocepacia PC184]
          Length = 251

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 63/154 (40%), Gaps = 3/154 (1%)

Query: 51  IEDHMATLICAQLLFLEAENPQKE-ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMG 109
           + D     + AQ           + I L INSPGG V A  A+   ++     +     G
Sbjct: 19  VTDDWWGGVSAQSFVQALAGITADTIHLRINSPGGDVFAARAMETAIRGHSARVIAHVDG 78

Query: 110 QAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIY 169
            AAS  S ++ A ++        A +++H       G A D+   A+ +  +   L   Y
Sbjct: 79  VAASAASFVMLAADEVE--ITDGAFVMIHNAWTFAMGNADDLRESAKLLDAVDASLVRTY 136

Query: 170 VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            K  G++ +++   +  +  MS+ EA   G  D+
Sbjct: 137 AKETGQSEDDISAWMAAETWMSSDEAVQRGFADR 170


>gi|238028274|ref|YP_002912505.1| hypothetical protein bglu_1g27310 [Burkholderia glumae BGR1]
 gi|237877468|gb|ACR29801.1| Hypothetical protein bglu_1g27310 [Burkholderia glumae BGR1]
          Length = 366

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 6/162 (3%)

Query: 45  VFVTGQIEDH--MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           + + G I      A    A+L   E  +    I + +NS GG V     IY+ ++     
Sbjct: 24  IRIYGDIGFWGTDAEQFAARL--DEVGSSAASIVVAVNSMGGDVFDAFTIYNLLRRYPGK 81

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIK 162
            +    G AAS  SLLL    +       NA +++H P    +G   ++ R A  +    
Sbjct: 82  TTGRVDGIAASAASLLLMGCSQI--VMPSNAMLMIHNPHTLAAGDEGELRRLADLLGSTS 139

Query: 163 RRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             +   Y +  G+T ++V + +D +  ++A++A + G  D +
Sbjct: 140 ANMLTAYAERSGQTEDKVRELMDVETWLTAAQAVELGFCDAI 181


>gi|229191943|ref|ZP_04318913.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           ATCC 10876]
 gi|228591494|gb|EEK49343.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           ATCC 10876]
          Length = 233

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 2/132 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           ++ + INSPGG V  G  IY  ++     +    +G AAS  S++  AG+K      P A
Sbjct: 20  DLIVSINSPGGYVHEGSEIYTALKNYPGNVEVQIVGLAASAASVIAMAGDKVR--ISPTA 77

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           +I++H  S    G   D+E+ A+ +    R +   YV   GK+ +E+   +  +  M   
Sbjct: 78  QIMIHNASMWNGGDHRDMEKAAEMLKTTDRAIVNAYVIKSGKSEKELLNMMAEETWMRPQ 137

Query: 194 EACDWGVVDKVL 205
           +A +   VD+++
Sbjct: 138 QALENNFVDEIM 149


>gi|134277934|ref|ZP_01764649.1| Clp protease domain protein [Burkholderia pseudomallei 305]
 gi|134251584|gb|EBA51663.1| Clp protease domain protein [Burkholderia pseudomallei 305]
          Length = 359

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 5/156 (3%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMG 115
           A    +QL  + A+     I++ INS GG V    AIY+ ++     +     G AAS  
Sbjct: 37  AQNFVSQLDAVAADASS--ITVAINSMGGDVFDAFAIYNALRRYAGKVKGRVDGIAASAA 94

Query: 116 SLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK 175
           SL+L A ++       NA +++H P    +G++ D+ R A+ +      +   Y +  G 
Sbjct: 95  SLVLMACDEIE--MPENALLMIHHPHTVAAGESKDLRRVAELLDNASAGILAAYAQRSGL 152

Query: 176 TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           + ++V   +D +  ++A++A + G  D V+ + + +
Sbjct: 153 SEDDVRAMMDAETWLTAAQAKEKGFCD-VIEAPVKL 187


>gi|111021596|ref|YP_704568.1| ATP-dependent Clp protease [Rhodococcus jostii RHA1]
 gi|110821126|gb|ABG96410.1| possible ATP-dependent Clp protease [Rhodococcus jostii RHA1]
          Length = 219

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 50/198 (25%), Positives = 85/198 (42%), Gaps = 4/198 (2%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYD-IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
            D      PM V          D +  RL  +RIV +TG+++        A L      +
Sbjct: 20  PDPRQPPAPMPVTSVPAPAPGPDWLAERLFDKRIVSLTGRLDSEATNRAAASLAL-LDAS 78

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
              E+ L+++     V A   + DT+  +  P+   C G    M    L+  ++  R A 
Sbjct: 79  GDGEVQLWLHGVDADVDAAATLLDTLDLMGVPLHVHCRGDVRGMAVAFLAPADR--RTAA 136

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
            +A   L +P    +G ASD+   A+   +  RRL +    +CG+  + V   +    I+
Sbjct: 137 SHATFHLREPQTSCTGPASDVAIAAEHHEQQLRRLQQRIADSCGRPVDAVSGDMRDHRIL 196

Query: 191 SASEACDWGVVDKVLMSR 208
           +A EA D+G++D V  +R
Sbjct: 197 TADEARDYGLIDAVTGAR 214


>gi|297585273|ref|YP_003701053.1| peptidase S14 ClpP [Bacillus selenitireducens MLS10]
 gi|297143730|gb|ADI00488.1| peptidase S14 ClpP [Bacillus selenitireducens MLS10]
          Length = 226

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 81/187 (43%), Gaps = 4/187 (2%)

Query: 31  RSYDIYSRLLKERIVFVTG--QIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTA 88
           R++  +      R + + G    E      +       +    + +I+++INSPGG V A
Sbjct: 2   RTFWNWENREDGRTLHLDGVIAEETWFGDEVTPAAFKEDLMADKGDITVWINSPGGDVFA 61

Query: 89  GMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQA 148
              IY+ +      ++    G AAS  S++  AG K      P + +++H P     G +
Sbjct: 62  ASQIYNMLMEYPGQVTVKIDGVAASAASVIAMAGTKV--LMGPTSLMMIHNPMTMAIGDS 119

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           ++++R  + + ++K  +   Y          + K +D +   +A +A + G  D+VL + 
Sbjct: 120 TEMKRAMEMLREVKESIMNAYELRTELPRNRLAKLMDDESWFNAKKAVELGFADEVLFTG 179

Query: 209 IDIEEKS 215
            +  E +
Sbjct: 180 EESSEPA 186


>gi|207724090|ref|YP_002254488.1| clpp-related protease protein [Ralstonia solanacearum MolK2]
 gi|206589299|emb|CAQ36261.1| putative clpp-related protease protein [Ralstonia solanacearum
           MolK2]
          Length = 255

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 6/159 (3%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
           +          AT    +L  + A+     I L +NSPGG V A  A+   ++     I 
Sbjct: 38  IVSDDWWGGVSATTFVKELAGITADV----IRLRVNSPGGDVFAARAMEAALRGHSAKII 93

Query: 105 TFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRR 164
               G AAS  S L+ A ++        A I++H+      G A D+   A+ + KI   
Sbjct: 94  VHVDGLAASAASFLIMAADEIE--IADGAFIMIHKAWTALWGNADDLRAEAELLDKIDST 151

Query: 165 LNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
           L   Y +  G++ +++   +  +  + A +A + G  D+
Sbjct: 152 LVNTYAQRTGQSADDIATWMAAETWLGADDAVERGFADR 190


>gi|167814835|ref|ZP_02446515.1| peptidase S14, ClpP [Burkholderia pseudomallei 91]
 gi|167911620|ref|ZP_02498711.1| peptidase S14, ClpP [Burkholderia pseudomallei 112]
          Length = 366

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 5/156 (3%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMG 115
           A    +QL  + A+     I++ INS GG V    AIY+ ++     +     G AAS  
Sbjct: 37  AQNFVSQLDAVAADASS--ITVAINSMGGDVFDAFAIYNALRRYAGKVKGRVDGIAASAA 94

Query: 116 SLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK 175
           SL+L A ++       NA +++H P    +G++ D+ R A+ +      +   Y +  G 
Sbjct: 95  SLVLMACDEIE--MPENALLMIHHPHTVAAGESKDLRRVAELLDNASAGILAAYAQRSGL 152

Query: 176 TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           + ++V   +D +  ++A++A + G  D V+ + + +
Sbjct: 153 SEDDVRAMMDAETWLTAAQAKEKGFCD-VIEAPVKL 187


>gi|302338498|ref|YP_003803704.1| peptidase S14 ClpP [Spirochaeta smaragdinae DSM 11293]
 gi|301635683|gb|ADK81110.1| peptidase S14 ClpP [Spirochaeta smaragdinae DSM 11293]
          Length = 277

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 2/137 (1%)

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AE   ++I + +NSPGG V  G+AIY+T+   +  +S    G AAS+ S++  +G +  R
Sbjct: 43  AEGNSRDIVVNLNSPGGDVFEGIAIYNTISAYRSRVSVRITGVAASIASVIALSGSR--R 100

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
                +  ++H P     G+A  +   AQ + KI  ++  IY ++   + +E+EK +D +
Sbjct: 101 IMGEGSFFMIHNPYAVVMGEADVLRSRAQTLDKIALQMVGIYERHSSLSKDEIEKAMDEE 160

Query: 188 HIMSASEACDWGVVDKV 204
                 EA   G  D +
Sbjct: 161 TWYGPDEAYAAGFADAI 177


>gi|9635590|ref|NP_061501.1| ClpP protease [Pseudomonas phage D3]
 gi|5059251|gb|AAD38956.1| ClpP protease [Pseudomonas phage D3]
          Length = 296

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 2/142 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L +     ++++ INSPGG V  G+AIY+ ++  K  ++   +G AAS  S +  AG++ 
Sbjct: 71  LRSIGNDVDVTVNINSPGGDVFEGLAIYNLLREHKGKVTVNIIGLAASAASFIAMAGDEI 130

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                  A +++H       G  +D+   A  +      L +IY +      +++ K +D
Sbjct: 131 R--IGRAAFLMIHNAWLIAMGNRNDLREIADWLEPFDMTLADIYAQRTEIDIDDIVKQMD 188

Query: 186 RDHIMSASEACDWGVVDKVLMS 207
            +  +   EA D G  D  L S
Sbjct: 189 AETWIGGREAVDKGWADAFLES 210


>gi|63055008|gb|AAY29042.1| predicted ATP-dependent Clp protease proteolytic subunit 2
           [Bifidobacterium pullorum]
          Length = 161

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 63/131 (48%), Positives = 93/131 (70%), Gaps = 2/131 (1%)

Query: 7   AKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFL 66
           A+   +D +  ++P   E+T  G +  D Y+RL ++RI+F+  Q++D  A  I AQLL L
Sbjct: 32  ARFAPQDRY--ILPQFEEKTPYGYKRQDPYTRLFEDRIIFMGVQVDDAAADDIMAQLLVL 89

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E+++P +++ +YINSPGG +TA  AIYDTMQ+IKP + T C+GQAAS  ++LL+AG KG 
Sbjct: 90  ESQDPNRDVMMYINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLAAGAKGK 149

Query: 127 RFALPNARILL 137
           R  LPNAR+L+
Sbjct: 150 RLILPNARVLI 160


>gi|229076635|ref|ZP_04209575.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock4-18]
 gi|228706461|gb|EEL58694.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock4-18]
          Length = 236

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 2/129 (1%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           + INSPGG V  G  IY  ++     +    +G AAS  S +  A  K      P A+I+
Sbjct: 23  VSINSPGGYVNEGSEIYTALKNYPGHVEVQIVGLAASAASFIAMAANKVR--ISPTAQIM 80

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +H  S    G   D+E+ A+ +    R +   YV   GK+ EE+   +  +  M   +A 
Sbjct: 81  IHNASMWNGGDHRDMEKAAEMLKITDRAIVNAYVIKSGKSEEELLNMMAEETWMGPQQAL 140

Query: 197 DWGVVDKVL 205
           +   VD+++
Sbjct: 141 ENNFVDEIM 149


>gi|323345140|ref|ZP_08085364.1| ATP-dependent Clp protease, protease subunit [Prevotella oralis
           ATCC 33269]
 gi|323094410|gb|EFZ36987.1| ATP-dependent Clp protease, protease subunit [Prevotella oralis
           ATCC 33269]
          Length = 352

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 56/169 (33%), Positives = 89/169 (52%), Gaps = 6/169 (3%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM 108
           G+ ED  +T I  +L  L+AE   K I + INS GG V AG+AI++ ++  K  +  F  
Sbjct: 25  GEYEDVRSTDITREL--LQAEATYKNIDVRINSIGGEVYAGIAIFNALKNCKADVRIFID 82

Query: 109 GQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           G AASM S++   G          AR++LH P GG  G  S++     D+  ++  L  +
Sbjct: 83  GIAASMASVIALCGRHVE--MSRYARLMLHSPYGGCWGNKSEMATCISDLEALEDTLCAM 140

Query: 169 YVKNCGKTYEEV-EKTLD-RDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
             K  G T EEV  +  D +DH ++A +A D G +D +  ++   E+++
Sbjct: 141 CAKRIGLTEEEVKARYFDGQDHWLTAQQALDAGFIDAIYDAQPVPEDQT 189


>gi|241894905|ref|ZP_04782201.1| ATP-dependent Clp protease proteolytic subunit [Weissella
           paramesenteroides ATCC 33313]
 gi|241871913|gb|EER75664.1| ATP-dependent Clp protease proteolytic subunit [Weissella
           paramesenteroides ATCC 33313]
          Length = 242

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 42/163 (25%), Positives = 77/163 (47%), Gaps = 6/163 (3%)

Query: 45  VFVTGQIEDH--MATLICAQLLF--LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           + + G+I       + + A      L+   P K I++ INSPGG V  G+AIY+ ++   
Sbjct: 15  IHIDGEIVSEKLWDSDVSATDFRDSLKELGPVKTINMSINSPGGSVFDGIAIYNMLKKNP 74

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
             ++    G AAS+ S++  AG+         + +++H P     G AS++   A  + +
Sbjct: 75  ATVNVTVEGLAASIASVIAMAGDTLT--MDTGSMLMIHNPFTMAVGNASELREMADTLDQ 132

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
           I+     IY +  G   E ++  +D +  ++A EA   G  D+
Sbjct: 133 IRESSVNIYHEKTGIDKEAIKSVMDNETWLTADEAITAGWADQ 175


>gi|326795110|ref|YP_004312930.1| peptidase S14 ClpP [Marinomonas mediterranea MMB-1]
 gi|326545874|gb|ADZ91094.1| peptidase S14 ClpP [Marinomonas mediterranea MMB-1]
          Length = 342

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 77/166 (46%)

Query: 46  FVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIST 105
            V G   D  A      +  +++     EI + + +PGG    G+AI + ++  K  +  
Sbjct: 27  TVGGSFFDPDAVAASEFIQAVQSMGDLDEIRVSLATPGGNFFDGLAIANFLKGHKAEVII 86

Query: 106 FCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRL 165
             + +A+S GS +      G   A P + +++H P  G  G A+D    A  +  +K  L
Sbjct: 87  EILSEASSAGSAIAMGASAGKLRAYPASFMMIHNPLTGMQGNANDFRAMADKLDILKSGL 146

Query: 166 NEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
             +Y +  G     + + LD++ +M+A EA   G VD+++++   +
Sbjct: 147 LRLYAERTGIEGATLWEMLDQETLMTAEEAVLKGFVDEIIVTEAPV 192


>gi|34762173|ref|ZP_00143180.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|27888134|gb|EAA25193.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
          Length = 344

 Score =  118 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 3/139 (2%)

Query: 66  LEAENPQKE-ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           LE      + I+LYINSPGG VT G AIY  ++  K   + +  GQ +S+ S++  AG+K
Sbjct: 41  LENFGNDIDTINLYINSPGGSVTEGCAIYSALKRHKAVKNVYIDGQCSSIASVIAMAGDK 100

Query: 125 GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
                 P A +++H P    +G A ++ + A  +  +K  +   YV     + EE+   +
Sbjct: 101 I--AMSPVATMMIHNPITALAGDAIELRKTAAILDIMKETIINAYVTKSHLSREEISALM 158

Query: 185 DRDHIMSASEACDWGVVDK 203
           D +   +A +A + G   +
Sbjct: 159 DTETYFTADQAIEKGFATE 177


>gi|15895167|ref|NP_348516.1| ClpP family serine protease [Clostridium acetobutylicum ATCC 824]
 gi|15024872|gb|AAK79856.1|AE007697_9 ClpP family serine protease, possible phage related [Clostridium
           acetobutylicum ATCC 824]
 gi|325509306|gb|ADZ20942.1| ClpP family serine protease, possible phage relted protein
           [Clostridium acetobutylicum EA 2018]
          Length = 256

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 43/160 (26%), Positives = 80/160 (50%), Gaps = 4/160 (2%)

Query: 47  VTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTF 106
           +T    D   T   +    L+A      I+L++NSPGG V  G+ I + ++     ++ +
Sbjct: 35  ITSYQWDDTDTTAASFKKDLDALGNLNTINLHLNSPGGSVFEGVTICNMLKQNSATVNVY 94

Query: 107 CMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLN 166
               AAS+ S++  AG+    F   NA +++H PS    G +SD+ + A D+ KI   + 
Sbjct: 95  VDALAASIASVIAMAGDTI--FMPKNAMLMVHNPSSVVWGNSSDMRKTADDLDKIGLSMQ 152

Query: 167 EIYVKNCGKTYEE--VEKTLDRDHIMSASEACDWGVVDKV 204
           + Y+   G   ++  +++ +D +  +SA E   +G+ D V
Sbjct: 153 QSYLAKAGDKLDQSTLQQLMDNETWLSADECFSYGLCDVV 192


>gi|167893326|ref|ZP_02480728.1| peptidase S14, ClpP [Burkholderia pseudomallei 7894]
          Length = 358

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 5/156 (3%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMG 115
           A    +QL  +  +     I++ INS GG V    AIY+ ++     +     G AAS  
Sbjct: 37  AQNFVSQLDAIATDASS--ITVAINSMGGDVFDAFAIYNALRRYAGKVKGRVDGIAASAA 94

Query: 116 SLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK 175
           SL+L A ++       NA +++H P    +G++ D+ R A+ +      +   Y +  G 
Sbjct: 95  SLVLMACDEIE--MPENALLMIHHPHTVAAGESKDLRRVAELLDNASAGILAAYAQRSGL 152

Query: 176 TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           + ++V   +D +  ++A++A + G  D V+ + + +
Sbjct: 153 SEDDVRAMMDAETWLTAAQAKEKGFCD-VIEAPVKL 187


>gi|294783245|ref|ZP_06748569.1| ATP-dependent Clp protease [Fusobacterium sp. 1_1_41FAA]
 gi|294480123|gb|EFG27900.1| ATP-dependent Clp protease [Fusobacterium sp. 1_1_41FAA]
          Length = 344

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 3/139 (2%)

Query: 66  LEAENPQKE-ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           LE      + I+LYINSPGG VT G AIY  ++  K   + +  GQ +S+ S++  AG+K
Sbjct: 41  LENFGNDIDTINLYINSPGGSVTEGCAIYSALKRHKAVKNVYIDGQCSSIASVIAMAGDK 100

Query: 125 GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
                 P A +++H P    +G A ++ + A  +  +K  +   YV     + EE+   +
Sbjct: 101 I--AMSPVATMMIHNPITALAGDAIELRKTAAILDIMKDTIINAYVTKSHLSREEISALM 158

Query: 185 DRDHIMSASEACDWGVVDK 203
           D +   +A +A + G   +
Sbjct: 159 DTETYFTADQAIEKGFATE 177


>gi|229083044|ref|ZP_04215449.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock4-2]
 gi|228700261|gb|EEL52842.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           Rock4-2]
          Length = 234

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 2/132 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           ++ + INSPGG V  G  IY  ++     +    +G AAS  S++  A +K      P A
Sbjct: 20  DLVVSINSPGGYVHEGSEIYTALKNYPGHVEVQIVGLAASAASVIAMAADKVR--ISPTA 77

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           +I++H  S    G   D+ + A+ +    R +   YV   GK+ EE+   +  +  M   
Sbjct: 78  QIMIHNASMWNGGDHRDMSKAAEMLKTTDRAIVNAYVIKSGKSEEELLNMMAEETWMGPQ 137

Query: 194 EACDWGVVDKVL 205
           +A +   VD+++
Sbjct: 138 QALENNFVDEIM 149


>gi|167758211|ref|ZP_02430338.1| hypothetical protein CLOSCI_00549 [Clostridium scindens ATCC 35704]
 gi|167664108|gb|EDS08238.1| hypothetical protein CLOSCI_00549 [Clostridium scindens ATCC 35704]
          Length = 251

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 74/135 (54%), Gaps = 5/135 (3%)

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFI--KPPISTFCMGQAASMGSLLLSAGEKG 125
           +E   K++++Y+NS GG V AG+AIY+ ++    K  +  F  G A S+ S+L  AG + 
Sbjct: 48  SEQEGKDLNVYVNSGGGSVFAGIAIYNMLKRHAAKNNVKVFVDGLAGSIASVLAFAGSEA 107

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC--GKTYEEVEKT 183
                 NA +++H P     G ++D+ + A D+ +IK  +  +Y ++   G T +++   
Sbjct: 108 PEIPS-NAFLMIHNPWSYCEGNSADMRKMADDLDQIKTGILNVYAEHLKEGVTIDQISAL 166

Query: 184 LDRDHIMSASEACDW 198
           +D +  ++  +A ++
Sbjct: 167 MDAETWLNGQQAAEY 181


>gi|86136200|ref|ZP_01054779.1| putative protease/scaffold protein [Roseobacter sp. MED193]
 gi|85827074|gb|EAQ47270.1| putative protease/scaffold protein [Roseobacter sp. MED193]
          Length = 326

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 43/144 (29%), Positives = 69/144 (47%), Gaps = 2/144 (1%)

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           L  L        I L +NSPGG V   +AIY+ ++     I+ +  G AAS  S +  AG
Sbjct: 33  LAELGVLPEDAAIDLRLNSPGGSVFDAVAIYNALKRHAGEITVWIDGIAASAASYIAMAG 92

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
           +        NA +++H PSG   G A D+   A+ + K+K  L + Y    GK  +E+  
Sbjct: 93  DAI--VMPENAFLMIHDPSGLVMGTAEDMRATAEALDKVKGSLIQGYAGKSGKPDDEIAA 150

Query: 183 TLDRDHIMSASEACDWGVVDKVLM 206
            +  +  + A +A D G +D++  
Sbjct: 151 LMAAETWLDAKDALDLGFIDRIAE 174


>gi|312984199|ref|ZP_07791545.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP
           [Lactobacillus crispatus CTV-05]
 gi|310894418|gb|EFQ43494.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP
           [Lactobacillus crispatus CTV-05]
          Length = 236

 Score =  118 bits (296), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 40/144 (27%), Positives = 70/144 (48%), Gaps = 2/144 (1%)

Query: 62  QLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSA 121
           QL    +    ++I+L INSPGG + AG  +Y  ++     ++   +GQA S  S +  A
Sbjct: 31  QLNEALSNANGQDITLEINSPGGYIDAGSEMYTALKKYPGNVTAQVVGQACSAASWIALA 90

Query: 122 GEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVE 181
            +K      P A++++H+ SGG  G   D     Q +  + +   ++Y K  G   +EV 
Sbjct: 91  ADKVE--MSPTAQMMIHRVSGGVEGNVDDFASAMQSLDSMDQAYVDLYSKRTGLDKQEVY 148

Query: 182 KTLDRDHIMSASEACDWGVVDKVL 205
           + +     M+A +A D G  D ++
Sbjct: 149 RMMCETTWMNAKQAVDKGFADSIM 172


>gi|308756016|gb|ADO51062.1| ATP-dependent Clp protease subunit [Lactobacillus acidophilus]
          Length = 223

 Score =  118 bits (296), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 82/185 (44%), Gaps = 4/185 (2%)

Query: 31  RSYDIYSRLLKERIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTA 88
           + +  ++    +R + ++G I  +  +   I  Q+   E    Q  I L++NSPGG  TA
Sbjct: 2   KRFWNWNHDGDQRQLSISGVIAPDSWVNDDISPQVFQDELNEDQGPIDLWLNSPGGDCTA 61

Query: 89  GMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQA 148
              IY  +      ++    G AAS  S++  AG        P A +++H P     GQ 
Sbjct: 62  ASRIYTMLMNYPNDVNVKVDGIAASAASVIAMAGTTV--SMAPTAMLMIHNPLTIVGGQK 119

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
            D+++ AQ + + K  +   Y         ++   +D +  M+ ++A + G  D++L   
Sbjct: 120 KDLDQAAQMLTETKESIVNAYELKTNLPRAKISTMMDNETWMNVNKAIELGFADEMLGQN 179

Query: 209 IDIEE 213
            ++ +
Sbjct: 180 KNVTD 184


>gi|268611147|ref|ZP_06144874.1| ATP-dependent Clp protease, proteolytic subunit ClpP, putative
           [Ruminococcus flavefaciens FD-1]
          Length = 306

 Score =  118 bits (296), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 4/165 (2%)

Query: 43  RIVFVTGQIEDH--MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           R++ + G I+        I  Q    E      +++L+INSPGG V A   IY  ++   
Sbjct: 15  RVLRLEGPIDSDSFWGDEITPQDFRDELYAEDGDLTLWINSPGGNVFAAAEIYTMIRDYP 74

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
             ++      AAS  S++  AG        P A ++++ PS    G A D+E+    + +
Sbjct: 75  HNVTVRIASIAASAASVIAMAGNTVQ--MSPTALLMINDPSTIAFGNAKDMEKAIATLNE 132

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           +K  +   Y    G +   + K +  +  ++A +A + G  D++L
Sbjct: 133 VKESIINAYAAKTGLSRNRISKLMSDETWINAKKAVELGFADEIL 177


>gi|186914928|gb|ACC95221.1| ClpP [Eudianthe laeta]
          Length = 99

 Score =  118 bits (296), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 38/96 (39%), Positives = 58/96 (60%), Gaps = 1/96 (1%)

Query: 110 QAASMGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIERHAQDIVKIKRRLNEI 168
            AASMGS +L  GE   R A P+AR+++HQP S  +  Q  +    A++++K++  L  +
Sbjct: 1   LAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFILEAEELLKLRETLTRV 60

Query: 169 YVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           YV+  GK    V + ++RD  MSA+EA   G+VD V
Sbjct: 61  YVQRTGKPIWVVSEDMERDVFMSAAEAQAHGIVDLV 96


>gi|170017407|ref|YP_001728326.1| protease subunit of ATP-dependent Clp protease [Leuconostoc citreum
           KM20]
 gi|169804264|gb|ACA82882.1| Protease subunit of ATP-dependent Clp protease [Leuconostoc citreum
           KM20]
          Length = 229

 Score =  118 bits (296), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 66/134 (49%), Gaps = 2/134 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
            ++ + INS GG V A   IY  ++     + T     A S  S++  AG+K      P 
Sbjct: 41  SDLEIGINSGGGEVDAANEIYTALRNYPGKVITQIESSAYSAASIIAMAGDKVQ--ISPV 98

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A++++H  S    G  +D+++ +  +    + + + Y    G+  EE    +D++  ++A
Sbjct: 99  AQLMIHNASTYAGGNHNDLDKTSNALKSTDKAIAKAYSVKTGRPVEEFLALMDKETWINA 158

Query: 193 SEACDWGVVDKVLM 206
            +A + G+VD+V+ 
Sbjct: 159 DDALELGLVDEVMT 172


>gi|221195242|ref|ZP_03568298.1| ATP-dependent Clp protease proteolytic subunit [Atopobium rimae
           ATCC 49626]
 gi|221185145|gb|EEE17536.1| ATP-dependent Clp protease proteolytic subunit [Atopobium rimae
           ATCC 49626]
          Length = 260

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 2/138 (1%)

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E  +  K + ++INS GG V  G+AIY+ ++     + T C G A S+ S++  AG +  
Sbjct: 56  ELSDDVKTVEVHINSYGGEVMQGVAIYNALRDCGREVVTVCDGFACSIASVIFMAGSR-- 113

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           R   P + ++LH P     G A D+ + A  +  I       Y+       E ++  +D 
Sbjct: 114 RIMRPASLLMLHNPWVSARGNAQDLRKQADTLDTIAELSKTAYMTGTSLDRETLDAVMDA 173

Query: 187 DHIMSASEACDWGVVDKV 204
           +  +S  +A +WG+  +V
Sbjct: 174 ETWVSPEQALEWGLATEV 191


>gi|157325221|ref|YP_001468643.1| gp4 [Listeria phage B025]
 gi|255520628|ref|ZP_05387865.1| Clp protease domain protein [Listeria monocytogenes FSL J1-175]
 gi|66733227|gb|AAY53044.1| gp4 [Listeria phage B025]
          Length = 249

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 69/153 (45%), Gaps = 2/153 (1%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +    +    ++  +   + INS GG V AG  IY T++     ++   +G AAS  S
Sbjct: 25  DSVSPNDISEALKDTFEPAEVVINSGGGDVYAGSEIYSTLKEYAGDVTVKIVGLAASAAS 84

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
           ++  AG        P A++++H  S   SG   D +  +  +    + +   Y+   GK 
Sbjct: 85  VIAMAGNTVK--IAPTAQLMIHNVSSVVSGDFRDFQHESDVLENYNKSIASAYMLKSGKA 142

Query: 177 YEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
             EV + ++ +   +A +A + G VD+++ +  
Sbjct: 143 ESEVLEFMNAETWFTAEQAKEHGFVDEIMFAEK 175


>gi|218897608|ref|YP_002446019.1| phage protein [Bacillus cereus G9842]
 gi|218544209|gb|ACK96603.1| phage protein [Bacillus cereus G9842]
          Length = 260

 Score =  118 bits (295), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 2/132 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           ++ + INSPGG V  G  IY  ++     +    +G AAS  S++  A +K      P A
Sbjct: 44  DLVVSINSPGGYVHEGSEIYTALKNYPGHVEVQIVGLAASAASVIAMAADKVR--ISPTA 101

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           +I++H  S    G   D+ + A+ +    R +   YV   GK+ EE+   +  +  M   
Sbjct: 102 QIMIHNASMWNGGDHRDMSKAAEMLKTTDRAIVNAYVIKSGKSEEELLNMMAEETWMGPQ 161

Query: 194 EACDWGVVDKVL 205
           +A +   VD+++
Sbjct: 162 QALENNFVDEIM 173


>gi|282921759|ref|ZP_06329476.1| phage protease [Staphylococcus aureus A9765]
 gi|282594021|gb|EFB99010.1| phage protease [Staphylococcus aureus A9765]
          Length = 257

 Score =  118 bits (295), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 38/141 (26%), Positives = 71/141 (50%), Gaps = 3/141 (2%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L+      EI ++INS GG V  G AIY+ ++     I+ +    AAS+ S++  +G+  
Sbjct: 45  LDELGDISEIDVHINSSGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTI 104

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC-GKTYEEVEKTL 184
             F   N+ +++H       G A ++ + A  + K     N  Y+        E++++ L
Sbjct: 105 --FMHKNSFLMIHNSWVMTVGNAEELRKTADLLDKTDAVSNSAYLDKAKNLDQEQLKQML 162

Query: 185 DRDHIMSASEACDWGVVDKVL 205
           D +  ++A EA  +G++D+VL
Sbjct: 163 DAETWLTAEEALSFGLIDEVL 183


>gi|188590464|ref|YP_001921498.1| peptidase S14, ClpP [Clostridium botulinum E3 str. Alaska E43]
 gi|188500745|gb|ACD53881.1| peptidase S14, ClpP [Clostridium botulinum E3 str. Alaska E43]
          Length = 263

 Score =  118 bits (295), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 73/153 (47%), Gaps = 4/153 (2%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L   +   +I++++NS GG V   MAI + +      I+    G AAS  S +L+     
Sbjct: 51  LSKYSGINQINVFVNSYGGSVYEAMAIRNQLMRHSANITGIVDGFAASAASFILTGCNYV 110

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC-GKTYEEVE-KT 183
             ++  N   ++H       G A+++ + A D+ KI     + Y++   GK  EE+  + 
Sbjct: 111 KMYS--NTMQMIHNMWMPACGNANELRKSADDLDKIMEGNRQAYLQKSNGKLTEEILIEL 168

Query: 184 LDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           L+ +  ++A +   +G+ D+V+   +D+E    
Sbjct: 169 LENETWLTAEDCLKYGLCDEVIEESVDLEAAKN 201


>gi|194366275|ref|YP_002028885.1| peptidase S14 ClpP [Stenotrophomonas maltophilia R551-3]
 gi|194349079|gb|ACF52202.1| peptidase S14 ClpP [Stenotrophomonas maltophilia R551-3]
          Length = 280

 Score =  118 bits (295), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 68/145 (46%), Gaps = 2/145 (1%)

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K++ + INSPGG    G+AIY+ ++  +  ++   MG AAS  S++  AG++       
Sbjct: 73  DKDVVVNINSPGGDFFEGVAIYNLLREHQGRVTVQVMGLAASAASVIAMAGDEI--LMGD 130

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
            + +++H       G   D+   A+ +      + ++Y    G T  E  + +D +  + 
Sbjct: 131 GSFLMIHNAWAVAIGNRHDMADAAKLLEPFDTAMAKVYAARSGVTEAEAARMMDEETWIG 190

Query: 192 ASEACDWGVVDKVLMSRIDIEEKSK 216
           A++A + G  D +L      ++  +
Sbjct: 191 AAQAVEDGFADGLLDGAAATKDAKQ 215


>gi|325276103|ref|ZP_08141914.1| peptidase S14 ClpP [Pseudomonas sp. TJI-51]
 gi|324098767|gb|EGB96802.1| peptidase S14 ClpP [Pseudomonas sp. TJI-51]
          Length = 291

 Score =  118 bits (295), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 2/142 (1%)

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K+I++ INSPGG V  G+AIY+ ++  K  ++   +G AAS  S +  AG++       
Sbjct: 75  DKDITVKINSPGGDVFEGLAIYNLLREHKGKVTVQVLGLAASAASFIAMAGDEIQ--IAR 132

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
              +++H      +G  +D    A  + +I   L +IY    G     +   +D +  M 
Sbjct: 133 AGFMMIHNAWTIAAGDRNDFTEVADFLDQIDATLADIYSVRTGDEVSAMRALMDVETWMG 192

Query: 192 ASEACDWGVVDKVLMSRIDIEE 213
            S A + G  D +L S    E+
Sbjct: 193 GSGAVEAGFADGLLPSDAAQED 214


>gi|148544339|ref|YP_001271709.1| peptidase S14, ClpP [Lactobacillus reuteri DSM 20016]
 gi|148531373|gb|ABQ83372.1| peptidase S14, ClpP [Lactobacillus reuteri DSM 20016]
          Length = 243

 Score =  118 bits (295), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 64/148 (43%), Gaps = 2/148 (1%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +    +     N  ++I + I S GG V A   IY  ++     +     G AAS  S
Sbjct: 25  DCVSPNQVEDVLNNSDEDIEVDIASGGGSVFAASEIYTMLKAYSGKVVVNIQGLAASAAS 84

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
           ++  AG++      P +++++H+ S    G A D    ++ +  + + +   Y    G  
Sbjct: 85  VIAMAGDEIN--MSPTSQMMIHKASTISMGNADDFAHDSKMLDVMDQSIVNAYEAKTGMD 142

Query: 177 YEEVEKTLDRDHIMSASEACDWGVVDKV 204
            +++ + +  +  M+A +A D G  D +
Sbjct: 143 RDDILQLMANETWMTAQDAVDKGFADNI 170


>gi|163800611|ref|ZP_02194512.1| putative protease/scaffold protein [Vibrio sp. AND4]
 gi|159176054|gb|EDP60848.1| putative protease/scaffold protein [Vibrio sp. AND4]
          Length = 670

 Score =  118 bits (295), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 45/151 (29%), Positives = 76/151 (50%), Gaps = 6/151 (3%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMG 115
           AT I A L   +     KE+ L + S GG V  G+A+Y+ ++  K  +     G AAS+ 
Sbjct: 33  ATEIIAALQVADG----KEVELRMLSGGGSVYQGLAMYNALKAHKGKVVGIVDGMAASIA 88

Query: 116 SLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK 175
           + +L A +        NA +++H PS G  G   +I    Q +    + ++E YV+  G+
Sbjct: 89  TYVLLACDSIR--MPENAMLMIHNPSIGAWGGEKEINSALQQLQAATKTISEAYVEKSGQ 146

Query: 176 TYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             E+V   ++ +   +A  A DWG+VD+V+ 
Sbjct: 147 PLEDVLTAMESETWFTAQAAKDWGLVDEVVE 177


>gi|114562854|ref|YP_750367.1| peptidase S14, ClpP [Shewanella frigidimarina NCIMB 400]
 gi|114334147|gb|ABI71529.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella
           frigidimarina NCIMB 400]
          Length = 656

 Score =  118 bits (295), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 6/164 (3%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
           + + G +         A    L A     +I+ YI S GG V  GMAIY+ +       S
Sbjct: 11  LILYGDVGWDFTAKQIA--TDLRAMGKVSQINAYIQSGGGDVMDGMAIYNILARWPCQKS 68

Query: 105 TFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRR 164
                 AASM S++  A +        NA +++H   GG  G A D+  +A  + K +  
Sbjct: 69  ICIESVAASMASVICMAFDTV--IMPSNAFLMIHSNWGGAVGTADDLREYADLLDKWRSS 126

Query: 165 LNEIYVKNCG--KTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           + + Y    G   + E++ +    D  +SA EA D G+ D+V+ 
Sbjct: 127 MGKAYQDKAGGKLSDEQLGQFFKEDTWLSAQEAVDLGLADEVIE 170


>gi|298486633|ref|ZP_07004691.1| Prophage Clp protease-like protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298158848|gb|EFH99910.1| Prophage Clp protease-like protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 199

 Score =  118 bits (295), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 2/135 (1%)

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K  ++YINSPGG +  G+AIY+ ++    PI+T  +G AAS  S++  AG K  R    
Sbjct: 66  DKPATVYINSPGGDMFEGLAIYNRLREHSQPITTKVLGLAASAASVIYMAGAK--REVAS 123

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           +  +++H       G   D+   A  + +    + ++Y +  G+   ++ + +D +  + 
Sbjct: 124 SGFLMIHNCWTLAVGNRHDLRDVANTMEEFDAAMADLYAEGSGQAVADIAEMMDDETFIR 183

Query: 192 ASEACDWGVVDKVLM 206
              A + G    VL 
Sbjct: 184 GRRAVELGFATAVLS 198


>gi|46579912|ref|YP_010720.1| ClpP protease family protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46449328|gb|AAS95979.1| ClpP protease family protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311234088|gb|ADP86942.1| peptidase S14 ClpP [Desulfovibrio vulgaris RCH1]
          Length = 244

 Score =  118 bits (295), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 6/158 (3%)

Query: 50  QIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMG 109
                 A     +L  + A      I L INSPGG V A   +   ++     +     G
Sbjct: 42  YWGGVSAEAFVRELNAITA----STIHLRINSPGGEVFAARCMEAAIKGHPAKVIAHVDG 97

Query: 110 QAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIY 169
            AAS  S +  A +       P A +++H+     +G + D+ + A  + K+   L E Y
Sbjct: 98  YAASAASFVAIACDDV--LMAPGAFMMIHKAWVFTAGNSDDLIQTASLLEKLDGTLAETY 155

Query: 170 VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
            + CGK+  ++ + +  +   +A EA + G+ D +  S
Sbjct: 156 SQKCGKSVSDMAEMMAAETWFTAQEAVEAGLADSIEES 193


>gi|256392039|ref|YP_003113603.1| peptidase S14 ClpP [Catenulispora acidiphila DSM 44928]
 gi|256358265|gb|ACU71762.1| peptidase S14 ClpP [Catenulispora acidiphila DSM 44928]
          Length = 564

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 3/145 (2%)

Query: 59  ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLL 118
           + AQ    E +     I L++NSPGG V  G+AI+  +   +  ++T+    AAS+ S++
Sbjct: 46  VTAQDFIDEMKQVDGPIDLHLNSPGGEVWDGIAIHAYLSG-RGGVTTYVDALAASIASVI 104

Query: 119 LSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYE 178
             AGE+       NA +++H   G   G A+D+   A+ + ++   +  IY    GK  +
Sbjct: 105 AMAGEQI--VMGRNASLMIHDGWGLVIGNAADMREQAELLDRVSDNIASIYADRTGKPKD 162

Query: 179 EVEKTLDRDHIMSASEACDWGVVDK 203
           +    +  +      EA D G+ D+
Sbjct: 163 DWRAAMLAETWYIGQEAVDAGLADR 187


>gi|331270735|ref|YP_004397329.1| caseinolytic protease (Clp) [Clostridium botulinum BKT015925]
 gi|329127698|gb|AEB77639.1| caseinolytic protease (Clp) [Clostridium botulinum BKT015925]
          Length = 258

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 47/195 (24%), Positives = 94/195 (48%), Gaps = 4/195 (2%)

Query: 24  EQTNRGERSYDIY--SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS 81
           E TN  E S DIY   +++ E+ V      E+    +    +  L  E   KEI+L+INS
Sbjct: 20  ELTNETESSADIYLYGQIVDEKPVNWWTGKEEEGEFIYPENIRKLVNEAGDKEINLHINS 79

Query: 82  PGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
            GG + A ++I++ ++  K  I+ +  G AAS  S++  A +K   F   N  +++H+ +
Sbjct: 80  TGGSIYASISIHNFLKQAKNKINVYIDGIAASGASIIAMAADKI--FMPENTTMMIHRAA 137

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            G  G    + + A  + K    +   Y +       E++  ++ +  ++A+E    G+ 
Sbjct: 138 VGVYGNVETLRKVANTLEKFDETVLNSYKERFVGEIGELKALIEDETYLTATECKSLGLC 197

Query: 202 DKVLMSRIDIEEKSK 216
           D++L  + + ++  +
Sbjct: 198 DEILNEQPEPKQPKQ 212


>gi|254523177|ref|ZP_05135232.1| peptidase S14, ClpP [Stenotrophomonas sp. SKA14]
 gi|219720768|gb|EED39293.1| peptidase S14, ClpP [Stenotrophomonas sp. SKA14]
          Length = 245

 Score =  117 bits (294), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 67/166 (40%), Gaps = 2/166 (1%)

Query: 41  KERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           KE  +++ G I      +         A      I L I+SPGG V A  ++   +   K
Sbjct: 27  KEATIYLHGVIGGWWGDIDETMFAQAMAGIDADVIHLRIDSPGGDVFAARSMMTAIAQHK 86

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
             +     G AAS  + +  A +K        A  ++H       G  +D+ +  + + K
Sbjct: 87  ATVIAHIDGLAASAMTGVCMACDKVE--ISQGAGFMIHNAWTITVGNKADMIKTGELLAK 144

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           I   L   Y +  GK   ++ + +D +   +A EA + G  D+V+ 
Sbjct: 145 IDAGLAGDYTRRTGKDQSQIVQWMDEETWFTADEAKEHGFADEVVE 190


>gi|184153715|ref|YP_001842056.1| phage Clp-protease [Lactobacillus reuteri JCM 1112]
 gi|227365058|ref|ZP_03849093.1| S14 family endopeptidase ClpP [Lactobacillus reuteri MM2-3]
 gi|325681598|ref|ZP_08161119.1| ATP-dependent Clp protease, protease subunit [Lactobacillus reuteri
           MM4-1A]
 gi|183225059|dbj|BAG25576.1| phage clp-protease [Lactobacillus reuteri JCM 1112]
 gi|227069908|gb|EEI08296.1| S14 family endopeptidase ClpP [Lactobacillus reuteri MM2-3]
 gi|324979063|gb|EGC16009.1| ATP-dependent Clp protease, protease subunit [Lactobacillus reuteri
           MM4-1A]
          Length = 244

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 64/148 (43%), Gaps = 2/148 (1%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +    +     N  ++I + I S GG V A   IY  ++     +     G AAS  S
Sbjct: 26  DCVSPNQVEDVLNNSDEDIEVDIASGGGSVFAASEIYTMLKAYSGKVVVNIQGLAASAAS 85

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
           ++  AG++      P +++++H+ S    G A D    ++ +  + + +   Y    G  
Sbjct: 86  VIAMAGDEIN--MSPTSQMMIHKASTISMGNADDFAHDSKMLDVMDQSIVNAYEAKTGMD 143

Query: 177 YEEVEKTLDRDHIMSASEACDWGVVDKV 204
            +++ + +  +  M+A +A D G  D +
Sbjct: 144 RDDILQLMANETWMTAQDAVDKGFADNI 171


>gi|229150843|ref|ZP_04279055.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           m1550]
 gi|228632632|gb|EEK89249.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           m1550]
          Length = 254

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 2/132 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           ++ + INSPGG V  G  IY  ++     +    +G AAS  S++  A +K      P A
Sbjct: 38  DLVVSINSPGGYVHEGSEIYTALKNYPGHVEVQIVGLAASAASVIAMAADKVR--ISPTA 95

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           +I++H  S    G   D+ + A+ +    R +   YV   GK+ EE+   +  +  M   
Sbjct: 96  QIMIHNASMWNGGDYRDMSKAAEMLKTTDRAIVNAYVIKSGKSEEELLNMMAEETWMGPQ 155

Query: 194 EACDWGVVDKVL 205
           +A +   VD+++
Sbjct: 156 QALENNFVDEIM 167


>gi|194247899|dbj|BAG55404.1| ATP-dependent Clp protease-like protein [chlorophyte sp. MBIC11204]
          Length = 131

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 51/82 (62%), Positives = 66/82 (80%)

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           I+ PIST C+GQAASM SLLL+AGEKG R +LPN+RI+LHQPSGGF GQASDI  HA++I
Sbjct: 1   IRNPISTLCVGQAASMASLLLAAGEKGQRRSLPNSRIMLHQPSGGFQGQASDIRIHAEEI 60

Query: 159 VKIKRRLNEIYVKNCGKTYEEV 180
            ++ +RLN+IY K+ G+    +
Sbjct: 61  TRLSKRLNQIYAKHTGQPENLI 82


>gi|220927070|ref|YP_002502372.1| peptidase S14 ClpP [Methylobacterium nodulans ORS 2060]
 gi|219951677|gb|ACL62069.1| peptidase S14 ClpP [Methylobacterium nodulans ORS 2060]
          Length = 237

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 67/157 (42%), Gaps = 7/157 (4%)

Query: 47  VTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTF 106
           +        A     +L  +EA      I L +NSPGG V A  A+   ++  K  +   
Sbjct: 38  IGSYYGID-AQTFVRELAAIEAGT----IHLRLNSPGGDVFAARAMKTALEQHKAKVVAH 92

Query: 107 CMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLN 166
             G AAS  S L+ A ++        A +++H+P     G A ++   A  + K+   + 
Sbjct: 93  IDGVAASAASFLMLAADEI--AIADGAFVMIHEPWSLALGTADEMRASADLLDKVGEAIA 150

Query: 167 EIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
             Y +  GK+ EEV   +  +   SA EA + G  D+
Sbjct: 151 ADYQRRTGKSAEEVAAWMKAETWFSADEAIENGFADR 187


>gi|227544633|ref|ZP_03974682.1| protease subunit of ATP-dependent Clp protease [Lactobacillus
           reuteri CF48-3A]
 gi|256847819|ref|ZP_05553264.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           coleohominis 101-4-CHN]
 gi|259502590|ref|ZP_05745492.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
 gi|300909450|ref|ZP_07126911.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           reuteri SD2112]
 gi|68160762|gb|AAY86827.1| lr0867 [Lactobacillus reuteri]
 gi|227185358|gb|EEI65429.1| protease subunit of ATP-dependent Clp protease [Lactobacillus
           reuteri CF48-3A]
 gi|256715508|gb|EEU30484.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           coleohominis 101-4-CHN]
 gi|259169405|gb|EEW53900.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
 gi|300893315|gb|EFK86674.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           reuteri SD2112]
          Length = 223

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 81/185 (43%), Gaps = 4/185 (2%)

Query: 31  RSYDIYSRLLKERIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTA 88
           + +  + +   +R + ++G I  +  +   +  Q+   E    Q  I L++NSPGG  TA
Sbjct: 2   KRFWNWKQNGDQRQLAISGVIAPDSWVHDDVSPQVFQDELNESQDPIDLWLNSPGGDCTA 61

Query: 89  GMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQA 148
              IY  +      ++    G AAS  S++  AG        P A +++H P     GQ 
Sbjct: 62  ASQIYTMLMNYPNEVNVKISGIAASAASVIAMAGTTV--SMAPAAMLMIHNPLTIVGGQE 119

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
            D++  AQ + + K  +   Y        E++   +D +  M+ ++A + G  D +L   
Sbjct: 120 RDLDHAAQMLAETKESIINAYELKTNLPREKISTMMDNETWMNVNKAIELGFADAMLGDN 179

Query: 209 IDIEE 213
            ++ +
Sbjct: 180 KNVTD 184


>gi|307943763|ref|ZP_07659107.1| ClpP protease [Roseibium sp. TrichSKD4]
 gi|307773393|gb|EFO32610.1| ClpP protease [Roseibium sp. TrichSKD4]
          Length = 283

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 68/144 (47%), Gaps = 3/144 (2%)

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            +++++ INSPGG +  G AIY+ ++     ++   +G AAS GS++    ++      P
Sbjct: 74  DEDVTVQINSPGGDLFEGTAIYNLLREHPAKVTVEVVGWAASAGSIIAMGSDEIR--MGP 131

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
             ++++H   G   G   D +   +   K    + +IY    G    ++ + +D +  +S
Sbjct: 132 GTKMMVHNAWGAVVGNRHDFKAGMELFEKFDAGIVDIYEARTGADRADIVRLMDEETFLS 191

Query: 192 ASEACDWGVVDKVLMSRIDIEEKS 215
             +A   G  D V+ + + I E +
Sbjct: 192 PEDAKKLGFAD-VVDNGLSIPEAN 214


>gi|167746043|ref|ZP_02418170.1| hypothetical protein ANACAC_00738 [Anaerostipes caccae DSM 14662]
 gi|167654558|gb|EDR98687.1| hypothetical protein ANACAC_00738 [Anaerostipes caccae DSM 14662]
          Length = 222

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 2/157 (1%)

Query: 51  IEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQ 110
            E      +  QL   E      +I+++INSPGG   A   IY+ +   K  +     G 
Sbjct: 9   EESWFDDDVTPQLFRDELNAGSGDITVWINSPGGDCIAAAQIYNMLMEYKGNVIVKIDGI 68

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYV 170
           AAS  S++  AG K      P + +++H PS G  G  + +++  + + ++K  +   Y 
Sbjct: 69  AASAASVIAMAGTKVC--VSPVSMLMIHNPSAGIYGNTAVMQKAIEMLDEVKESIVNAYE 126

Query: 171 KNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
              G +  ++   +D +  M A+ A + G  D++L  
Sbjct: 127 IKTGMSRAKISHLMDAETWMDANSAVEMGFADEILQR 163


>gi|229824181|ref|ZP_04450250.1| hypothetical protein GCWU000282_01485 [Catonella morbi ATCC 51271]
 gi|229786535|gb|EEP22649.1| hypothetical protein GCWU000282_01485 [Catonella morbi ATCC 51271]
          Length = 250

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 2/148 (1%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             + A+L+    E   K I + +NSPGG V  G+ IY+ ++     ++    G AAS  S
Sbjct: 37  DAVSAKLVRDSLEGVDKPILIKLNSPGGDVFEGIEIYNYLKNHNQSVTVEITGVAASAAS 96

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
           ++    +K          +++H+ S    G  +DI++    +  I   L  IY +  G  
Sbjct: 97  IIAMGADKI--IMNTGTTLMIHEASSFAFGNKTDIQKVLNALETIDASLVAIYAERTGID 154

Query: 177 YEEVEKTLDRDHIMSASEACDWGVVDKV 204
            +E++  L+ +  ++A EA D G  D+V
Sbjct: 155 TDEIKDLLNAETWLTAEEAVDKGFADEV 182


>gi|300704547|ref|YP_003746150.1| phage-related clp protease [Ralstonia solanacearum CFBP2957]
 gi|299072211|emb|CBJ43543.1| phage-related Clp protease [Ralstonia solanacearum CFBP2957]
          Length = 255

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 6/159 (3%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
           +          AT    +L  + A+     I L +NSPGG V A  A+   ++     I 
Sbjct: 38  IVSDDWWGGVSATTFVKELAGITADV----IRLRVNSPGGDVFAARAMEAALRGHSAKII 93

Query: 105 TFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRR 164
               G AAS  S L+ A ++        A I++H+      G A D+   A+ + KI   
Sbjct: 94  VHVDGLAASAASFLIMAADEIE--IADGAFIMIHKAWTALWGNADDLRAEAELLDKIDST 151

Query: 165 LNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
           L   Y +  G++ +++   +  +  + A +A + G  D+
Sbjct: 152 LVNTYAQRTGQSADDIATWMATETWLGADDAVERGFADR 190


>gi|167039898|ref|YP_001662883.1| peptidase S14, ClpP [Thermoanaerobacter sp. X514]
 gi|300915295|ref|ZP_07132609.1| peptidase S14 ClpP [Thermoanaerobacter sp. X561]
 gi|307724778|ref|YP_003904529.1| peptidase S14 ClpP [Thermoanaerobacter sp. X513]
 gi|166854138|gb|ABY92547.1| peptidase S14, ClpP [Thermoanaerobacter sp. X514]
 gi|300888571|gb|EFK83719.1| peptidase S14 ClpP [Thermoanaerobacter sp. X561]
 gi|307581839|gb|ADN55238.1| peptidase S14 ClpP [Thermoanaerobacter sp. X513]
          Length = 226

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 77/169 (45%), Gaps = 4/169 (2%)

Query: 41  KERIVFVTGQIEDHMA--TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           + R +++ G I +       +       E  + + +I ++INSPGG   A   IY+ +  
Sbjct: 14  QTRTLYLNGAIAEESWFEDDVTPAAFREELMSGEGDIVVWINSPGGDCIAASQIYNMLMD 73

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
            K  ++    G AAS  S++  AG +      P + +++H P     G + ++++  Q +
Sbjct: 74  YKGNVTVKIDGIAASAASVIAMAGTEV--LMSPTSLMMIHNPFTIAIGDSEEMQKAIQML 131

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
            ++K  +   Y    G +   +   +D +  ++A++A + G  D ++  
Sbjct: 132 DEVKESIINAYELKTGLSRTRLSHLMDAETWLNANKAVELGFADDIMFK 180


>gi|326800870|ref|YP_004318689.1| peptidase S14 ClpP [Sphingobacterium sp. 21]
 gi|326551634|gb|ADZ80019.1| peptidase S14 ClpP [Sphingobacterium sp. 21]
          Length = 373

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 5/162 (3%)

Query: 46  FVTGQIED-HMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
           F+    E  + AT    +   LE ++ + +I  YINSPGG V  G+ I++T++  +  I 
Sbjct: 24  FIGDYWEKANTATNFEREFRALEEKHDRIDI--YINSPGGSVWEGLPIFNTIRSSQKEIH 81

Query: 105 TFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRR 164
           T+  G A SMG +LL + + G R A   +  + H  S    G A  + + A ++ K    
Sbjct: 82  TYVNGIAFSMGFMLLLSAKNGRRHAFKGSIGMAHNVSTYDYGNAKQLRKSADELDKYDDV 141

Query: 165 LNEIYVKNCGKTYEEV-EKTLD-RDHIMSASEACDWGVVDKV 204
           L+ +  +  GKT E+V  + L+  DH  +  E    G V+ +
Sbjct: 142 LSALIAECSGKTVEQVKSEWLNYEDHFFTPDEMKAEGFVNHI 183


>gi|268610677|ref|ZP_06144404.1| peptidase s14, clpp [Ruminococcus flavefaciens FD-1]
          Length = 250

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 73/155 (47%), Gaps = 2/155 (1%)

Query: 51  IEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQ 110
            +      I   +   E      ++++++NSPGG V A   IY  ++  K  ++    G 
Sbjct: 26  EDTWFGDEITPAMFRNELSKVSGDLTVWLNSPGGDVFAASQIYTMLRNHKGKVTVKIDGI 85

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYV 170
           AAS  S++  AG++      P   +++H PS    G    +++  + + ++K  +   Y 
Sbjct: 86  AASAASVVAMAGDET--LIAPTGMLMIHNPSTVAFGNKEAMQKAIELLDEVKESIINAYE 143

Query: 171 KNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           +  G +  ++ + +D +  ++A +A   G+VD +L
Sbjct: 144 EKSGLSRSKIARMMDEETWLNAKKAQSLGLVDGIL 178


>gi|257428232|ref|ZP_05604630.1| protease [Staphylococcus aureus subsp. aureus 65-1322]
 gi|258445568|ref|ZP_05693750.1| prophage protease [Staphylococcus aureus A6300]
 gi|258455562|ref|ZP_05703519.1| conserved hypothetical protein [Staphylococcus aureus A5937]
 gi|282905858|ref|ZP_06313713.1| phage protease [Staphylococcus aureus subsp. aureus Btn1260]
 gi|257275073|gb|EEV06560.1| protease [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257855615|gb|EEV78548.1| prophage protease [Staphylococcus aureus A6300]
 gi|257862250|gb|EEV85021.1| conserved hypothetical protein [Staphylococcus aureus A5937]
 gi|282331150|gb|EFB60664.1| phage protease [Staphylococcus aureus subsp. aureus Btn1260]
          Length = 257

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 71/141 (50%), Gaps = 3/141 (2%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L+      EI ++INS GG V  G AIY+ ++     I+ +    AAS+ S++  +G+  
Sbjct: 45  LDELGDISEIDVHINSSGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTI 104

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCG-KTYEEVEKTL 184
             F   N+ +++H       G A ++ + A  + K     N  Y+        E++++ L
Sbjct: 105 --FMHKNSFLMIHNSWVMTVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEQLKQML 162

Query: 185 DRDHIMSASEACDWGVVDKVL 205
           D +  ++A EA  +G++D++L
Sbjct: 163 DAETWLTAEEALSFGLIDEIL 183


>gi|146308985|ref|YP_001189450.1| peptidase S14, ClpP [Pseudomonas mendocina ymp]
 gi|145577186|gb|ABP86718.1| peptidase S14, ClpP [Pseudomonas mendocina ymp]
          Length = 216

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 68/161 (42%), Gaps = 6/161 (3%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM 108
           G      A  +   L  L+     ++++L INSPGG V  G A+   +   K  ++ +  
Sbjct: 17  GDWYGIGAEQVAQALRDLQG----RDVALRINSPGGDVFDGRAMATAISQHKGKVTAYID 72

Query: 109 GQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           G AAS  + +  A ++        A  ++H       G A D    A  + K+   +   
Sbjct: 73  GLAASAATYVALAADEVE--IAGGAFFMIHNAWTLNMGNADDFRETASLLDKVDDSIVAD 130

Query: 169 YVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           Y++   +  E+V   +  +   SA EA + G VD++  S+ 
Sbjct: 131 YIRKTSQADEQVRAWMKAETWFSAEEAVEHGFVDRLSQSKK 171


>gi|298693635|gb|ADI96857.1| Prophage Clp protease-like protein [Staphylococcus aureus subsp.
           aureus ED133]
          Length = 257

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 75/157 (47%), Gaps = 5/157 (3%)

Query: 52  EDHMATLICAQLLF--LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMG 109
           +  + + + A      L+      EI ++INS GG V  G AIY+ ++     I+ +   
Sbjct: 29  DKWVESDVTATDFKNKLDELGDISEIDVHINSSGGSVFEGHAIYNMLKMHPAKINIYVDA 88

Query: 110 QAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIY 169
            AAS+ S++  +G+    F   N+ +++H       G A ++ + A  + K     N  Y
Sbjct: 89  LAASIASVIAMSGDTI--FMHKNSFLMIHNSWVMTVGNAEELRKTADLLEKTDAVSNSAY 146

Query: 170 VKNCG-KTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           +        E +++ LD +  ++A EA  +G++D+VL
Sbjct: 147 LDKAKDLDQEHLKQMLDAETWLTAEEALSFGLIDEVL 183


>gi|217965838|ref|YP_002351516.1| serine protease [Listeria monocytogenes HCC23]
 gi|217335108|gb|ACK40902.1| serine protease [Listeria monocytogenes HCC23]
 gi|307569613|emb|CAR82792.1| phage protein, Clp family [Listeria monocytogenes L99]
          Length = 276

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 2/139 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L+A     +I + INS GG V  G AIY+ +      I     G AAS+ S++  AG+  
Sbjct: 49  LDALGDVSKIYVNINSNGGFVYEGQAIYNQLVRHPAQIHVRIDGMAASIASVIAMAGDII 108

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
              A  NA++++H+P+GG  G  SD+E   + +   K+ +   Y  +      E+E  + 
Sbjct: 109 EMPA--NAQMMIHEPAGGAFGNKSDLESAIRALDASKQSIIAAYRTHTTLEVSEIESMMA 166

Query: 186 RDHIMSASEACDWGVVDKV 204
            +  MS  EA + G    V
Sbjct: 167 EEKWMSGQEAYELGFATLV 185


>gi|254195020|ref|ZP_04901449.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei S13]
 gi|254195945|ref|ZP_04902371.1| Clp protease [Burkholderia pseudomallei S13]
 gi|254197217|ref|ZP_04903639.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei S13]
 gi|169651768|gb|EDS84461.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei S13]
 gi|169652690|gb|EDS85383.1| Clp protease [Burkholderia pseudomallei S13]
 gi|169653958|gb|EDS86651.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
           pseudomallei S13]
          Length = 366

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 5/156 (3%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMG 115
           A    +QL    A      I++ INS GG V    AIY+ ++     +     G AAS  
Sbjct: 37  AQNFVSQLDA--AAADASSITVAINSMGGDVFDAFAIYNALRRYAGKVKGRVDGIAASAA 94

Query: 116 SLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK 175
           SL+L A ++       NA +++H P    +G++ D+ R A+ +      +   YV+  G 
Sbjct: 95  SLVLMACDEIE--MPENALLMIHHPHTVAAGESKDLRRVAELLDNASAGILAAYVQRSGL 152

Query: 176 TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           + ++V   +D +  ++A++A + G  D V+ + + +
Sbjct: 153 SEDDVRAMMDAETWLTAAQAKEKGFCD-VIEAPVKL 187


>gi|323442648|gb|EGB00276.1| phiSLT ORF257-like protein, putative prophage protease
           [Staphylococcus aureus O46]
          Length = 255

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 75/157 (47%), Gaps = 5/157 (3%)

Query: 52  EDHMATLICAQLLF--LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMG 109
           +  + + + A      L+      EI ++INS GG V  G AIY+ ++     I+ +   
Sbjct: 27  DKWVESDVTATDFKNKLDELGDISEIDVHINSSGGSVFEGHAIYNMLKMHPAKINIYVDA 86

Query: 110 QAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIY 169
            AAS+ S++  +G+    F   N+ +++H       G A ++ + A  + K     N  Y
Sbjct: 87  LAASIASVIAMSGDTI--FMHKNSFLMIHNSWVMTVGNAEELRKTADLLEKTDAVSNSAY 144

Query: 170 VKNCG-KTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           +        E +++ LD +  ++A EA  +G++D+VL
Sbjct: 145 LDKAKDLDQEHLKQMLDAETWLTAEEALSFGLIDEVL 181


>gi|288927924|ref|ZP_06421771.1| ATP-dependent Clp protease proteolytic subunit [Prevotella sp. oral
           taxon 317 str. F0108]
 gi|288330758|gb|EFC69342.1| ATP-dependent Clp protease proteolytic subunit [Prevotella sp. oral
           taxon 317 str. F0108]
          Length = 369

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/149 (29%), Positives = 82/149 (55%), Gaps = 6/149 (4%)

Query: 58  LICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSL 117
            + A+L+ L+++  +  I + INS GG V +G+AIY+ ++  K  I+ +  G AAS+  +
Sbjct: 33  RVVAELMALQSQYSK--IDVRINSRGGDVFSGIAIYNALRTSKADITVYIDGVAASIAGI 90

Query: 118 LLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTY 177
           +   G+    +  P A+++LH  SGG  G AS++ + A+ +  ++  L  +    CG   
Sbjct: 91  IALCGKPL--YMSPYAKLMLHAVSGGTWGNASELRQMAEVMENLQGDLASMIAGRCGMKK 148

Query: 178 EEVEKTL--DRDHIMSASEACDWGVVDKV 204
           +EV      ++DH +SA EA    ++D +
Sbjct: 149 DEVLAKYFDEKDHWISAQEALSMKLIDGI 177


>gi|108773081|ref|YP_635990.1| ATP-dependent Clp protease proteolytic subunit [Scenedesmus
           obliquus]
 gi|88696647|gb|ABD48273.1| proteolytic subunit 2 of clp protease [Scenedesmus obliquus]
          Length = 537

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/141 (37%), Positives = 83/141 (58%)

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           E   K++ + INS GG V  G+ I+D +QFIK    T  +G AAS  SL L+ G  G R+
Sbjct: 358 EEESKKVFMVINSFGGSVGNGITIHDALQFIKAGSMTLGLGVAASAASLALAGGTIGERY 417

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
                 +++HQP GG SGQASDI   +Q+I+KI+  + EIY  +  +   ++ + LDRD 
Sbjct: 418 VTEGCHVMMHQPEGGLSGQASDIWIDSQEILKIRLDVAEIYSLSTYRPRHKILRDLDRDF 477

Query: 189 IMSASEACDWGVVDKVLMSRI 209
            ++A E   +G+ D++  + +
Sbjct: 478 YLTAMETIYYGLADEIATNEV 498



 Score = 36.4 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 25/44 (56%)

Query: 31 RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
          +  DIY+ + + R+VF+   ++D +   IC  L+ +  E+  KE
Sbjct: 19 QWTDIYNFIFRRRMVFLMQYLDDELCNQICGLLINIHMEDRSKE 62


>gi|258427137|ref|ZP_05688059.1| scaffolding protease [Staphylococcus aureus A9299]
 gi|257849915|gb|EEV73874.1| scaffolding protease [Staphylococcus aureus A9299]
          Length = 257

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/141 (26%), Positives = 71/141 (50%), Gaps = 3/141 (2%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L+      EI ++INS GG V  G AIY+ ++     I+ +    AAS+ S++  +G+  
Sbjct: 45  LDELGDISEIDVHINSSGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTI 104

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC-GKTYEEVEKTL 184
             F   N+ +++H       G A ++ + A  + K     N  Y+        E++++ L
Sbjct: 105 --FKPKNSFLMIHNSWVMTVGNAEELRKTADLLDKTDAVSNSAYLDKAKNLDQEQLKQML 162

Query: 185 DRDHIMSASEACDWGVVDKVL 205
           D +  ++A EA  +G++D+VL
Sbjct: 163 DAETWLTAEEALSFGLIDEVL 183


>gi|28211745|ref|NP_782689.1| phage protein [Clostridium tetani E88]
 gi|28204187|gb|AAO36626.1| phage protein [Clostridium tetani E88]
          Length = 226

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 72/142 (50%), Gaps = 2/142 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L      + + + INS GG V AG  IY  ++  K  ++   +G AAS  S++  AG+K 
Sbjct: 35  LSNSKNNEGLEVEINSGGGSVFAGSEIYTLLKDYKGNVTVKIVGLAASAASVIAMAGDKV 94

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                P  +I++H  SG FSG   ++E+ ++ +  +   ++  Y    G + EE+   ++
Sbjct: 95  --LISPTGQIMIHNASGCFSGDYRNMEKGSEILKNVNITISNAYKLKTGLSSEELLDMMN 152

Query: 186 RDHIMSASEACDWGVVDKVLMS 207
           ++  ++   A D   VD+++ +
Sbjct: 153 KETWLTPQNALDNKFVDEIMFT 174


>gi|168186894|ref|ZP_02621529.1| serine protease [Clostridium botulinum C str. Eklund]
 gi|169295178|gb|EDS77311.1| serine protease [Clostridium botulinum C str. Eklund]
          Length = 246

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 78/164 (47%), Gaps = 7/164 (4%)

Query: 55  MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASM 114
            A  I  Q   LE+ N    I+++INS GG V  G+AIY+ ++      + +  G A S+
Sbjct: 43  SANYIQKQ---LESINNVSNINIFINSYGGEVKEGLAIYNQLKRHPAQKTVYVDGFACSI 99

Query: 115 GSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCG 174
            S++  AG+K       N  +++H  + G  G A ++ + A D+  I +     Y+   G
Sbjct: 100 ASVIAMAGDKV--IMGTNTLMMIHHAAMGAWGNAEELRKAANDVEVIDKASCSSYLTKAG 157

Query: 175 --KTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
              + E + + LD    ++A +   +G+ D++     D   K++
Sbjct: 158 DKLSEETLNQLLDNQTWLNAEQCLQYGLCDEIAGKEDDNVSKAQ 201


>gi|290475060|ref|YP_003467944.1| ClpP protease [Xenorhabdus bovienii SS-2004]
 gi|289174377|emb|CBJ81171.1| ClpP protease [Xenorhabdus bovienii SS-2004]
          Length = 283

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 64/137 (46%), Gaps = 2/137 (1%)

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
              +++ + INSPGG V  G+AIY+ ++     ++   +G AAS  S++  AG++     
Sbjct: 70  MGDQDVIVNINSPGGDVFEGIAIYNLLRNHSGQVTVNVLGLAASAASVIAMAGDEIN--M 127

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
              A +++H       G  +++   A+ +      L +IY    G     + + +D +  
Sbjct: 128 GRGAFLMIHNAWTCCCGNKNELVAVAEALRPFDDSLIDIYAARTGIDKASIAQMMDDETF 187

Query: 190 MSASEACDWGVVDKVLM 206
           ++ +EA   G  D +L 
Sbjct: 188 INHTEAIAQGFADGLLT 204


>gi|213517391|gb|ACJ50097.1| ATP-dependent Clp protease proteolytic subunit [Chlamydomonas
           reinhardtii]
          Length = 524

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 51/141 (36%), Positives = 82/141 (58%)

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           E   K++ + INS GG V  G+ ++D +QFIK    T  +G AAS  SL L+ G  G R+
Sbjct: 343 EEESKKVFMIINSFGGSVGNGITVHDALQFIKAGSLTLALGVAASAASLALAGGTIGERY 402

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
                  ++HQP GG +GQASDI   +Q+I+KI+  + EIY  +  +   ++ + LDRD 
Sbjct: 403 VTEGCHTMIHQPEGGLNGQASDIWIDSQEIMKIRLDVAEIYSLSTYRPRHKILRDLDRDF 462

Query: 189 IMSASEACDWGVVDKVLMSRI 209
            ++A E   +G+ D++  + +
Sbjct: 463 YLTAMETIYYGLADEIATNEV 483



 Score = 34.8 bits (79), Expect = 7.8,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 23/42 (54%)

Query: 31 RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
          +  DIY+ + + R+VF+   ++D +   IC  L+ +  E+  
Sbjct: 19 QWTDIYNFIFRRRMVFLMQYLDDELCNQICGLLINIHMEDRS 60


>gi|187933949|ref|YP_001886447.1| peptidase S14, ClpP [Clostridium botulinum B str. Eklund 17B]
 gi|187722102|gb|ACD23323.1| peptidase S14, ClpP [Clostridium botulinum B str. Eklund 17B]
          Length = 247

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 84/171 (49%), Gaps = 6/171 (3%)

Query: 48  TGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFC 107
             ++E   +     Q+  LE+     EI+LYINS GG V  G+ IY+ ++     ++ + 
Sbjct: 36  GEKMESETSANYIKQV--LESNQSTSEINLYINSYGGEVKEGLGIYNQLKRHPAQVNVYI 93

Query: 108 MGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNE 167
            G A S+ S++   G+K       NA +++H  S G  G A ++ + A D+  I +    
Sbjct: 94  DGFACSIASVIAMVGDKV--VMGTNALMMIHHASIGCYGNAEELRKAANDVEVIDQASCS 151

Query: 168 IYVKNCGKTYEE--VEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
            Y+   G+  +E  +++ LD    ++AS+  ++G+ D++        E ++
Sbjct: 152 SYLTKAGEKLDEATLKQLLDNQTWLNASQCLEYGLCDEIAGQEDKTIEAAQ 202


>gi|41179009|ref|NP_958364.1| ATP-dependent Clp protease proteolytic subunit [Chlamydomonas
           reinhardtii]
 gi|1168976|sp|P42380|CLPP_CHLRE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp
 gi|567775|gb|AAA53086.1| Clp protease [Chlamydomonas reinhardtii]
 gi|28269732|tpg|DAA00910.1| TPA_inf: Clp protease proteolytic subunit [Chlamydomonas
           reinhardtii]
          Length = 524

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 51/141 (36%), Positives = 82/141 (58%)

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           E   K++ + INS GG V  G+ ++D +QFIK    T  +G AAS  SL L+ G  G R+
Sbjct: 343 EEESKKVFMIINSFGGSVGNGITVHDALQFIKAGSLTLALGVAASAASLALAGGTIGERY 402

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
                  ++HQP GG +GQASDI   +Q+I+KI+  + EIY  +  +   ++ + LDRD 
Sbjct: 403 VTEGCHTMIHQPEGGLNGQASDIWIDSQEIMKIRLDVAEIYSLSTYRPRHKILRDLDRDF 462

Query: 189 IMSASEACDWGVVDKVLMSRI 209
            ++A E   +G+ D++  + +
Sbjct: 463 YLTAMETIYYGLADEIATNEV 483



 Score = 34.8 bits (79), Expect = 7.8,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 23/42 (54%)

Query: 31 RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
          +  DIY+ + + R+VF+   ++D +   IC  L+ +  E+  
Sbjct: 19 QWTDIYNFIFRRRMVFLMQYLDDELCNQICGLLINIHMEDRS 60


>gi|148807233|gb|ABR13326.1| putative ATP-dependent protease proteolytic subunit [Prunus dulcis]
          Length = 111

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 44/98 (44%), Positives = 66/98 (67%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           +RL +ER++F+   ++  ++  +   +++L  E+  K++ L+INSPGG V  G+AIYDTM
Sbjct: 12  NRLYRERLLFLGQGVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTM 71

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           QF++P I T CMG AASMGS +L  GE   R A P+A 
Sbjct: 72  QFVRPDIQTICMGLAASMGSFILVGGEITKRLAFPHAW 109


>gi|156306210|ref|XP_001617564.1| hypothetical protein NEMVEDRAFT_v1g157296 [Nematostella vectensis]
 gi|156194583|gb|EDO25464.1| predicted protein [Nematostella vectensis]
          Length = 87

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 38/81 (46%), Positives = 54/81 (66%)

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           +RI++HQP GG  GQASDIE  A++I K+K+ L EI   + G+   +VEK  DRD+ M+A
Sbjct: 1   SRIMIHQPLGGAEGQASDIEITAREIGKLKKELYEIIAHHSGQKLAKVEKDSDRDYWMTA 60

Query: 193 SEACDWGVVDKVLMSRIDIEE 213
            EA D+G++D+VL       E
Sbjct: 61  QEAKDYGMIDEVLERNPRKAE 81


>gi|77409464|ref|ZP_00786157.1| Clp protease [Streptococcus agalactiae COH1]
 gi|77171931|gb|EAO75107.1| Clp protease [Streptococcus agalactiae COH1]
          Length = 106

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 41/102 (40%), Positives = 62/102 (60%), Gaps = 2/102 (1%)

Query: 108 MGQAASMGSLLLSAGEKGMRFALPNARILLHQP--SGGFSGQASDIERHAQDIVKIKRRL 165
           MG AASMG+++ S+G KG RF LPNA  ++HQP    G   Q SD+   A+ ++K +  L
Sbjct: 1   MGMAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQSDMAIAAEHLLKTRHTL 60

Query: 166 NEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
            +I   N G++ E+V    +RD  MSA E  D+G +D ++ +
Sbjct: 61  EKILADNSGQSIEKVHDDAERDRWMSAQETLDYGFIDAIMEN 102


>gi|331699529|ref|YP_004335768.1| peptidase S14 ClpP [Pseudonocardia dioxanivorans CB1190]
 gi|326954218|gb|AEA27915.1| peptidase S14 ClpP [Pseudonocardia dioxanivorans CB1190]
          Length = 433

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 7/161 (4%)

Query: 46  FVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIST 105
            + G      A      +  L+ +     I L++NSPGG    G+AI + ++  +  +  
Sbjct: 54  TIGGWWGM-TADDFVRDVATLDVDQ----IVLHLNSPGGDAFEGVAIANVLRAHRARVVV 108

Query: 106 FCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRL 165
              G AAS  S++  AG++ +      +++++H  SG   G A++IE   + +      L
Sbjct: 109 RVDGMAASAASVIAMAGDEVVMGI--GSQMMVHDASGYTWGNAAEIEAFLRRLNATSDSL 166

Query: 166 NEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
              Y    G T  E    +  +   +  EA   G+ D+V  
Sbjct: 167 AGTYAARAGGTVAEWRAVMQAETWYTPEEAVAAGLADRVAT 207


>gi|323439020|gb|EGA96753.1| phiSLT ORF257-like protein, putative prophage protease
           [Staphylococcus aureus O11]
          Length = 255

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 70/141 (49%), Gaps = 3/141 (2%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L+      EI ++INS GG V  G AIY+ ++     I+ +    AAS+ S++  +G+  
Sbjct: 43  LDELGDISEIDVHINSSGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTI 102

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCG-KTYEEVEKTL 184
             F   N+ +++H       G A ++ + A  + K     N  Y+        E +++ L
Sbjct: 103 --FMHKNSFLMIHNSWVMTVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQML 160

Query: 185 DRDHIMSASEACDWGVVDKVL 205
           D +  ++A EA  +G++D++L
Sbjct: 161 DAETWLTAEEALSFGLIDEIL 181


>gi|224159711|ref|XP_002338112.1| predicted protein [Populus trichocarpa]
 gi|222870927|gb|EEF08058.1| predicted protein [Populus trichocarpa]
          Length = 99

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 43/99 (43%), Positives = 67/99 (67%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           + +RL +ER++F+   I+  ++  +   +++L  E+  K++ L+INSPGG V  G+AIYD
Sbjct: 1   LINRLYRERLLFLGQDIDSEISNQLIGLMVYLSTESEIKDLYLFINSPGGWVIPGIAIYD 60

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           TMQF++P + T CMG AASMGS +L  G+   R A P+A
Sbjct: 61  TMQFVRPDVQTVCMGLAASMGSFILVGGKITKRLAFPHA 99


>gi|84662599|ref|YP_453564.1| ClpP family protein [Xanthomonas phage OP1]
 gi|84570648|dbj|BAE72711.1| ClpP family protein [Xanthomonas oryzae phage OP1]
          Length = 245

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 84/191 (43%), Gaps = 6/191 (3%)

Query: 20  PMVVEQTNRGERSYDIYSRLL--KERIVFVTGQIEDHMATL--ICAQLLFLEAENPQKEI 75
           P  + ++   +  +DI  R      R + +   I           AQ+          ++
Sbjct: 16  PDTISKSKEIQAKWDIAPRAAWRDGREINIFSVIGRDDLNDGTTSAQIGSFLEAMGPGDV 75

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           ++ I+SPGG + AG+AIY+ +   +  ++   +G+AAS  S++  +G++       +A +
Sbjct: 76  TVNIDSPGGDMFAGLAIYNQLIAHQGKVTVNVVGRAASAASVIAMSGDQIN--MHTSAFL 133

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++H       G A ++   A  +      + +IYV    +  + V + +D +  M+A EA
Sbjct: 134 MIHNCHLVIGGNAKELMSVAAMMEPFDSAMADIYVARSSQAKDTVVQMMDNETWMNAEEA 193

Query: 196 CDWGVVDKVLM 206
              G  D ++ 
Sbjct: 194 VKMGFADSIVT 204


>gi|188589670|ref|YP_001921112.1| peptidase S14, ClpP [Clostridium botulinum E3 str. Alaska E43]
 gi|188499951|gb|ACD53087.1| peptidase S14, ClpP [Clostridium botulinum E3 str. Alaska E43]
          Length = 377

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 6/152 (3%)

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
            L+    +  I++ INS GG V    AIY  ++  K  I+    G A S  +++  AG+K
Sbjct: 43  QLDLYKDRDNITVRINSNGGDVFTASAIYTLLKDCKASITVKIDGMAMSAATVVAMAGDK 102

Query: 125 GMRFALPNARI-LLHQPSGGFSG--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVE 181
                +P+  I ++H P  G  G    SD+E+    +  +K  +   Y+    KT EE+E
Sbjct: 103 ---VLIPSTSIFMIHDPLAGLCGYYNVSDLEKVINRLSVVKNTIINAYINKTDKTKEEIE 159

Query: 182 KTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
             +  +  ++  +A + G  D+V+ S  D E 
Sbjct: 160 DLMTNELWLTGEDAVNEGFCDEVMFSETDNEP 191


>gi|237744773|ref|ZP_04575254.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           7_1]
 gi|229432002|gb|EEO42214.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           7_1]
          Length = 367

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 72/151 (47%), Gaps = 6/151 (3%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI----KPPISTFCMGQAASMGSLLLSA 121
           L+      +I+L +NSPGG V    AIY+ ++         I+ +  G AAS  S L+  
Sbjct: 48  LQNYKNVSQINLRVNSPGGDVFEASAIYNLLKDFAKVNNIQITGYIDGLAASAASFLILC 107

Query: 122 GEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVE 181
             K +      A  ++H P     G + ++++  + +  +K  + +IY      + EE+ 
Sbjct: 108 ASKIVMGI--GALFMIHNPLTYAYGNSIELQKQIELLDTVKESILDIYCTKSKLSREEIA 165

Query: 182 KTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
           + ++ +    A+EA + G +D+++ +   +E
Sbjct: 166 EKMNNEKWFRANEALEAGFIDEIVENDNSLE 196


>gi|110804048|ref|YP_699942.1| putative endopeptidase [Clostridium phage phiSM101]
 gi|110684549|gb|ABG87916.1| putative endopeptidase [Clostridium phage phiSM101]
          Length = 243

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 2/139 (1%)

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
            +    +++ + INS GG V  G  IY  ++     +    +G AAS  S++   G+K  
Sbjct: 37  NSVQQGEQLEVIINSNGGYVDEGSEIYTLLKDYNGEVVIKIVGMAASAASVIAMGGDKVK 96

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
               P  RI++H  +GG  G    +E  A+ +      +   Y    G + EE+   +++
Sbjct: 97  --ISPTGRIMIHNAAGGVCGDYRQMEHGAEVLKDCNEAIANAYALKTGMSKEELLDLMNK 154

Query: 187 DHIMSASEACDWGVVDKVL 205
           +  M+A +A   G VD+++
Sbjct: 155 ETFMNAQKAKQLGFVDEIM 173


>gi|325109862|ref|YP_004270930.1| peptidase S14 ClpP [Planctomyces brasiliensis DSM 5305]
 gi|324970130|gb|ADY60908.1| peptidase S14 ClpP [Planctomyces brasiliensis DSM 5305]
          Length = 205

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 44/154 (28%), Positives = 76/154 (49%), Gaps = 8/154 (5%)

Query: 51  IEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQ 110
              +    +  QL  L        I + INSPGG +  G+ IY+ ++     ++T  +G 
Sbjct: 11  EGQNTTEAVSRQLQGL------GNIEVVINSPGGSLIEGLGIYNLLKSHGGHVTTRTVGA 64

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYV 170
           A S GS++L AG++  R     A +++H P+G F G  +D+ +  + +    R+L ++YV
Sbjct: 65  AWSAGSIVLLAGKR--RVMGGGASLMVHLPAGEFRGNVNDLAKFREALDVAGRQLVDVYV 122

Query: 171 KNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
              G   E+VE+ L  +   +A EA D G    +
Sbjct: 123 AETGTAREQVEQWLHDETWFTAQEAVDAGFAHAI 156


>gi|294665723|ref|ZP_06730997.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|292604507|gb|EFF47884.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
          Length = 215

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 66/160 (41%), Gaps = 6/160 (3%)

Query: 47  VTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTF 106
           + G   D   T     L  ++A+     I L I+SPGG V A  A+   +   K  +   
Sbjct: 7   IGGWWGDIDETEFVKALAAIDADT----IHLRIDSPGGDVFAARAMMTAIAQHKATVIAH 62

Query: 107 CMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLN 166
             G AAS  + +  A ++        A  ++H       G  +D+ +  + + KI   L 
Sbjct: 63  VDGLAASAATGICMACDEVE--ITQGAGFMIHNAWTIAIGNKADMAKTGELLGKIDDGLA 120

Query: 167 EIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             Y +  G    +V + ++ +   +A EA + G  D+V+ 
Sbjct: 121 GDYTRRTGNEVAQVVQWMNDETWFTADEAKEHGFADRVIE 160


>gi|148245175|ref|YP_001219868.1| ClpP-like phage protease [Clostridium kluyveri DSM 555]
 gi|219684075|ref|YP_002470457.1| hypothetical protein CKR_P47 [Clostridium kluyveri NBRC 12016]
 gi|146337055|gb|ABQ23666.1| predicted ClpP-like phage protease [Clostridium kluyveri DSM 555]
 gi|219570583|dbj|BAH08566.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 255

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 81/170 (47%), Gaps = 8/170 (4%)

Query: 41  KERIVFVTGQIEDHMATLI----CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           K+  +F+ G+I  +          +    L+       I+L+INSPGG V  G+AI + +
Sbjct: 18  KQADIFIYGEIVSYKWDDTDTTAASFKKDLDDLGDVNTINLHINSPGGNVFEGVAIGNML 77

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQ 156
           +  K  ++ +    AAS+ S++  +G         N+ +++H P     G A D  + A 
Sbjct: 78  KQHKAQVNVYVDALAASIASIIAMSGNTI--LMPKNSMMMIHNPLSIAWGNAKDFRKKAD 135

Query: 157 DIVKIKRRLNEIYVKNCGKTYEE--VEKTLDRDHIMSASEACDWGVVDKV 204
           D+ KI   +   Y+   G   ++  ++K +D D  +SA +A  +G+ D V
Sbjct: 136 DLDKIGLSMQTTYLNKAGDKLDQDTLQKLMDNDTWLSADDAYSYGLCDVV 185


>gi|75762668|ref|ZP_00742509.1| ATP-dependent endopeptidase clp proteolytic subunit clpP [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|74489848|gb|EAO53223.1| ATP-dependent endopeptidase clp proteolytic subunit clpP [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
          Length = 227

 Score =  115 bits (288), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 2/132 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           ++ + INSPGG V  G  IY  ++     +    +G AAS  S++  AG+K      P A
Sbjct: 48  DLIVSINSPGGYVHEGSEIYTALKNYPGNVEVQIVGLAASAASVIAMAGDKVQ--ISPTA 105

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           +I++H  S    G   D+E+ A+ +    R +   YV   GK+ +E+   +  +  M   
Sbjct: 106 QIMIHNASMWNGGDHRDMEKAAEMLKTTDRAIVNAYVIKSGKSEKELLNMMAEETWMGPQ 165

Query: 194 EACDWGVVDKVL 205
           +A +   VD+++
Sbjct: 166 QALENNFVDEIM 177


>gi|320140399|gb|EFW32254.1| Clp protease [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320142757|gb|EFW34560.1| Clp protease [Staphylococcus aureus subsp. aureus MRSA177]
          Length = 255

 Score =  115 bits (288), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 70/141 (49%), Gaps = 3/141 (2%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L+      EI ++INS GG V  G AIY+ ++     I+ +    AAS+ S++  +G+  
Sbjct: 43  LDELGDISEIDVHINSSGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTI 102

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCG-KTYEEVEKTL 184
             F   N+ +++H       G A ++ + A  + K     N  Y+        E +++ L
Sbjct: 103 --FMHKNSFLMIHNSWVMTVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQML 160

Query: 185 DRDHIMSASEACDWGVVDKVL 205
           D +  ++A EA  +G++D++L
Sbjct: 161 DAETWLTAEEALSFGLIDEIL 181


>gi|160897080|ref|YP_001562662.1| peptidase S14 ClpP [Delftia acidovorans SPH-1]
 gi|160362664|gb|ABX34277.1| peptidase S14 ClpP [Delftia acidovorans SPH-1]
          Length = 287

 Score =  115 bits (288), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 49/218 (22%), Positives = 90/218 (41%), Gaps = 19/218 (8%)

Query: 1   MSFEGCAK----KDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDH-- 54
           MS +        + S  V   ++P   E+ N G R+    S   ++R + V   I     
Sbjct: 1   MSIKALPGAPMGRPSASVRSEILPRAFERWNPGLRAALEESE--EDRSISVYDVIGYDYW 58

Query: 55  -----MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMG 109
                 A  I   L  L       ++++ INSPGG +  G+AIY+ ++  K  ++   +G
Sbjct: 59  TGDGVTARRIAGALRSL----GPGDVTVNINSPGGDMFEGLAIYNLLREHKGQVTVKVLG 114

Query: 110 QAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIY 169
            AAS  S++  +G+           +++H      +G  +D    A  +      + +IY
Sbjct: 115 LAASAASVIAMSGDTVQ--IARAGFLMIHNAWVIAAGNRNDFREIADWLEPFDSAMADIY 172

Query: 170 VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
               G   + + K +D +  +  S A + G  D++L S
Sbjct: 173 AARTGAEQKAMAKLMDAESWLGGSSAVEQGFADELLPS 210


>gi|288957681|ref|YP_003448022.1| Clp protease [Azospirillum sp. B510]
 gi|288958877|ref|YP_003449218.1| ATP-dependent Clp protease [Azospirillum sp. B510]
 gi|288909989|dbj|BAI71478.1| Clp protease [Azospirillum sp. B510]
 gi|288911185|dbj|BAI72674.1| ATP-dependent Clp protease [Azospirillum sp. B510]
          Length = 287

 Score =  115 bits (288), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 75/159 (47%), Gaps = 6/159 (3%)

Query: 47  VTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTF 106
           + G  +   A     ++  L  +     I++ +NSPGGVV  G+AIY  +   K  I   
Sbjct: 27  IGGWWDGIQAEEFAKEIDALSVDT----INVRLNSPGGVVFDGVAIYQALARHKANIVIH 82

Query: 107 CMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLN 166
             G AAS+ S++  AG++ +R A   A +++H+P     G A  + + A  + +++  + 
Sbjct: 83  IDGIAASIASVIAMAGDE-IRIA-EGAHVMIHKPWSFAIGDAEVMRKEADILDQLESGIV 140

Query: 167 EIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           +IY    G+  + +   +  +    A  A D G  D V+
Sbjct: 141 DIYAARTGQERKALVDWVAAETWFGAQAAKDAGFADTVV 179


>gi|160898878|ref|YP_001564460.1| peptidase S14 ClpP [Delftia acidovorans SPH-1]
 gi|160364462|gb|ABX36075.1| peptidase S14 ClpP [Delftia acidovorans SPH-1]
          Length = 345

 Score =  114 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 50/163 (30%), Positives = 81/163 (49%), Gaps = 10/163 (6%)

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP---ISTFCMGQAASMGSL 117
           A+    +  N   +I + +N+PGG V AG+ I++ ++        ++T  MG AAS+GS+
Sbjct: 31  AKDFRDQLANVAGDIDVELNTPGGDVFAGLGIFNMLRAHAAKGFQVTTRVMGVAASIGSV 90

Query: 118 LLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTY 177
           LL AG+K  R    N   + H  + G  G A ++  HA  + K+K +L  IYV   G   
Sbjct: 91  LLLAGDK--REMPKNTMAMTHNVASGIWGTADELRDHADTMDKVKGQLRGIYVDRLGVDE 148

Query: 178 EEVEKTLDRDHIMSASEACDWGVVDKVL-----MSRIDIEEKS 215
              +  L +D+ M+A EA   G    +L      ++ D+E  S
Sbjct: 149 ATADAMLGKDNWMTADEALATGFATDLLAEVQMQAKFDVERAS 191


>gi|148267495|ref|YP_001246438.1| peptidase S14, ClpP [Staphylococcus aureus subsp. aureus JH9]
 gi|150393549|ref|YP_001316224.1| peptidase S14 ClpP [Staphylococcus aureus subsp. aureus JH1]
 gi|282927349|ref|ZP_06334967.1| peptidase S14, ClpP [Staphylococcus aureus A10102]
 gi|147740564|gb|ABQ48862.1| peptidase S14, ClpP [Staphylococcus aureus subsp. aureus JH9]
 gi|149946001|gb|ABR51937.1| peptidase S14 ClpP [Staphylococcus aureus subsp. aureus JH1]
 gi|282590673|gb|EFB95749.1| peptidase S14, ClpP [Staphylococcus aureus A10102]
          Length = 257

 Score =  114 bits (287), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 70/141 (49%), Gaps = 3/141 (2%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L+      EI ++INS GG V  G AIY+ ++     I+ +    AAS+ S++  +G+  
Sbjct: 45  LDELGDISEIDVHINSSGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTI 104

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCG-KTYEEVEKTL 184
             F   N+ +++H       G A ++ + A  + K     N  Y+        E +++ L
Sbjct: 105 --FMHKNSFLMIHNSWVMTVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQML 162

Query: 185 DRDHIMSASEACDWGVVDKVL 205
           D +  ++A EA  +G++D++L
Sbjct: 163 DAETWLTAEEALSFGLIDEIL 183


>gi|66395603|ref|YP_239937.1| ORF015 [Staphylococcus phage 3A]
 gi|62635949|gb|AAX91060.1| ORF015 [Staphylococcus phage 3A]
          Length = 257

 Score =  114 bits (287), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 70/141 (49%), Gaps = 3/141 (2%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L+      EI ++INS GG V  G AIY+ ++     I+ +    AAS+ S++  +G+  
Sbjct: 45  LDELGDISEIDVHINSSGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTI 104

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCG-KTYEEVEKTL 184
             F   N+ +++H       G A ++ + A  + K     N  Y+        E +++ L
Sbjct: 105 --FMHKNSFLMIHNSWVMTVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQML 162

Query: 185 DRDHIMSASEACDWGVVDKVL 205
           D +  ++A EA  +G++D++L
Sbjct: 163 DAETWLTAEEALSFGLIDEIL 183


>gi|269203617|ref|YP_003282886.1| phage Clp protease [Staphylococcus aureus subsp. aureus ED98]
 gi|262075907|gb|ACY11880.1| phage Clp protease [Staphylococcus aureus subsp. aureus ED98]
          Length = 257

 Score =  114 bits (287), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 70/141 (49%), Gaps = 3/141 (2%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L+      EI ++INS GG V  G AIY+ ++     I+ +    AAS+ S++  +G+  
Sbjct: 45  LDELGDISEIDVHINSSGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDAI 104

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCG-KTYEEVEKTL 184
             F   N+ +++H       G A ++ + A  + K     N  Y+        E +++ L
Sbjct: 105 --FMHKNSFLMIHNSWVMTVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQML 162

Query: 185 DRDHIMSASEACDWGVVDKVL 205
           D +  ++A EA  +G++D++L
Sbjct: 163 DAETWLTAEEALSFGLIDEIL 183


>gi|303239123|ref|ZP_07325653.1| peptidase S14 ClpP [Acetivibrio cellulolyticus CD2]
 gi|302593461|gb|EFL63179.1| peptidase S14 ClpP [Acetivibrio cellulolyticus CD2]
          Length = 232

 Score =  114 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 76/170 (44%), Gaps = 4/170 (2%)

Query: 43  RIVFVTGQIEDHMA--TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           R +++ G I +       +  +    +    + +I ++INSPGG   A   IY  +   K
Sbjct: 16  RTLYLDGTIAEESWFDDDVTPKAFKTDLIAGEGDIVIWINSPGGDCIAASQIYTMLMDYK 75

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
             ++    G AAS  S++  AG +      P A +++H P     G + ++++    + +
Sbjct: 76  GRVTVKIDGIAASAASVIAMAGTEV--LMAPTALMMVHNPLTIAIGDSEEMQKAISMLDE 133

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           +K  +   Y    G++  ++   +D +  ++A++A + G  D +L     
Sbjct: 134 VKESIINAYEIKTGQSRAKLSHLMDAETWLNANKAIELGFADGLLEDEKK 183


>gi|283469602|emb|CAQ48813.1| protease [Staphylococcus aureus subsp. aureus ST398]
 gi|283470729|emb|CAQ49940.1| protease [Staphylococcus aureus subsp. aureus ST398]
          Length = 257

 Score =  114 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 70/141 (49%), Gaps = 3/141 (2%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L+      EI ++INS GG V  G AIY+ ++     I+ +    AAS+ S++  +G+  
Sbjct: 45  LDELGDISEIDVHINSSGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTI 104

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCG-KTYEEVEKTL 184
             F   N+ +++H       G A ++ + A  + K     N  Y+        E +++ L
Sbjct: 105 --FMHKNSFLMIHNSWVMTVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQML 162

Query: 185 DRDHIMSASEACDWGVVDKVL 205
           D +  ++A EA  +G++D++L
Sbjct: 163 DAETWLTAEEALSFGLIDEIL 183


>gi|12719432|ref|NP_075503.1| protease [Staphylococcus phage phiSLT]
 gi|21283128|ref|NP_646216.1| protease [Staphylococcus aureus subsp. aureus MW2]
 gi|29028649|ref|NP_803338.1| scaffolding protease [Staphylococcus phage phi 12]
 gi|49485840|ref|YP_043061.1| phage protease [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57651296|ref|YP_185261.1| prophage L54a, Clp protease, putative [Staphylococcus aureus subsp.
           aureus COL]
 gi|66395523|ref|YP_239858.1| ORF015 [Staphylococcus phage 42E]
 gi|66395672|ref|YP_240004.1| ORF016 [Staphylococcus phage 47]
 gi|87161020|ref|YP_494099.1| phiSLT ORF257-like protein, putative prophage protease
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|88195249|ref|YP_500052.1| scaffolding protease [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|156603996|ref|YP_001429942.1| putative protease [Staphylococcus phage tp310-2]
 gi|161509680|ref|YP_001575339.1| bacteriophage protease [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|209363589|ref|YP_002268007.1| prohead protease [Staphylococcus phage phi2958PVL]
 gi|215401148|ref|YP_002332403.1| putative scaffold protein [Staphylococcus phage phiSauS-IPLA35]
 gi|253315475|ref|ZP_04838688.1| phiSLT ORF257-like protein, putative prophage protease
           [Staphylococcus aureus subsp. aureus str. CF-Marseille]
 gi|257432454|ref|ZP_05608817.1| scaffolding protease [Staphylococcus aureus subsp. aureus E1410]
 gi|258420298|ref|ZP_05683245.1| scaffolding protease [Staphylococcus aureus A9719]
 gi|258448837|ref|ZP_05696947.1| scaffolding protease [Staphylococcus aureus A6224]
 gi|282911087|ref|ZP_06318889.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282919223|ref|ZP_06326958.1| phage protease [Staphylococcus aureus subsp. aureus C427]
 gi|284024509|ref|ZP_06378907.1| phiSLT ORF257-like protein, putative prophage protease
           [Staphylococcus aureus subsp. aureus 132]
 gi|294848478|ref|ZP_06789224.1| phage protease [Staphylococcus aureus A9754]
 gi|295407559|ref|ZP_06817352.1| phage protease [Staphylococcus aureus A8819]
 gi|296276330|ref|ZP_06858837.1| phiSLT ORF257-like protein, putative prophage protease
           [Staphylococcus aureus subsp. aureus MR1]
 gi|297207829|ref|ZP_06924263.1| bacteriophage protease [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297246589|ref|ZP_06930422.1| phage protease [Staphylococcus aureus A8796]
 gi|297591011|ref|ZP_06949649.1| bacteriophage protease [Staphylococcus aureus subsp. aureus MN8]
 gi|300911915|ref|ZP_07129358.1| bacteriophage protease [Staphylococcus aureus subsp. aureus TCH70]
 gi|12697862|dbj|BAB21734.1| protease [Staphylococcus phage phiSLT]
 gi|18920573|gb|AAL82313.1| scaffolding protease [Staphylococcus phage phi 12]
 gi|21204568|dbj|BAB95264.1| protease [Staphylococcus aureus subsp. aureus MW2]
 gi|49244283|emb|CAG42710.1| phage protease [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57285482|gb|AAW37576.1| prophage L54a, Clp protease, putative [Staphylococcus aureus subsp.
           aureus COL]
 gi|62636016|gb|AAX91127.1| ORF015 [Staphylococcus phage 42E]
 gi|62636096|gb|AAX91207.1| ORF016 [Staphylococcus phage 47]
 gi|87126994|gb|ABD21508.1| phiSLT ORF257-like protein, putative prophage protease
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|87202807|gb|ABD30617.1| scaffolding protease [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|154818082|gb|ABS87509.1| putative protease [Staphylococcus phage tp310-2]
 gi|160368489|gb|ABX29460.1| bacteriophage protease [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|208973090|dbj|BAG74406.1| prohead protease [Staphylococcus phage phi2958PVL]
 gi|215260499|gb|ACJ64629.1| gp40 [Staphylococcus phage phiSauS-IPLA35]
 gi|257283333|gb|EEV13465.1| scaffolding protease [Staphylococcus aureus subsp. aureus E1410]
 gi|257843723|gb|EEV68125.1| scaffolding protease [Staphylococcus aureus A9719]
 gi|257857874|gb|EEV80765.1| scaffolding protease [Staphylococcus aureus A6224]
 gi|282317033|gb|EFB47407.1| phage protease [Staphylococcus aureus subsp. aureus C427]
 gi|282324782|gb|EFB55092.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|294824504|gb|EFG40927.1| phage protease [Staphylococcus aureus A9754]
 gi|294967578|gb|EFG43614.1| phage protease [Staphylococcus aureus A8819]
 gi|296887545|gb|EFH26444.1| bacteriophage protease [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297176547|gb|EFH35812.1| phage protease [Staphylococcus aureus A8796]
 gi|297575897|gb|EFH94613.1| bacteriophage protease [Staphylococcus aureus subsp. aureus MN8]
 gi|300886161|gb|EFK81363.1| bacteriophage protease [Staphylococcus aureus subsp. aureus TCH70]
 gi|302333119|gb|ADL23312.1| caseinolytic phage protease [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|312438083|gb|ADQ77154.1| bacteriophage protease [Staphylococcus aureus subsp. aureus TCH60]
 gi|315128434|gb|EFT84442.1| bacteriophage protease [Staphylococcus aureus subsp. aureus CGS03]
 gi|315197736|gb|EFU28070.1| bacteriophage protease [Staphylococcus aureus subsp. aureus CGS01]
 gi|329729413|gb|EGG65818.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus 21189]
 gi|329730627|gb|EGG67012.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 257

 Score =  114 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 70/141 (49%), Gaps = 3/141 (2%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L+      EI ++INS GG V  G AIY+ ++     I+ +    AAS+ S++  +G+  
Sbjct: 45  LDELGDISEIDVHINSSGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTI 104

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCG-KTYEEVEKTL 184
             F   N+ +++H       G A ++ + A  + K     N  Y+        E +++ L
Sbjct: 105 --FMHKNSFLMIHNSWVMTVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQML 162

Query: 185 DRDHIMSASEACDWGVVDKVL 205
           D +  ++A EA  +G++D++L
Sbjct: 163 DAETWLTAEEALSFGLIDEIL 183


>gi|227543567|ref|ZP_03973616.1| peptidase S14, ClpP [Lactobacillus reuteri CF48-3A]
 gi|300909404|ref|ZP_07126865.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           reuteri SD2112]
 gi|77745343|gb|ABB02572.1| ATP-dependent Clp protease [Lactobacillus reuteri]
 gi|227186407|gb|EEI66478.1| peptidase S14, ClpP [Lactobacillus reuteri CF48-3A]
 gi|300893269|gb|EFK86628.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           reuteri SD2112]
          Length = 220

 Score =  114 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 2/154 (1%)

Query: 52  EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQA 111
           +  +   +  Q+   E       I +++NSPGG   A   IY  +      ++    G A
Sbjct: 25  DSWIDDEVSPQVFQDELNQSCGPIDVWLNSPGGDCVAASQIYTMLMSYPNDVNVKIAGIA 84

Query: 112 ASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVK 171
           AS  S++  AG K      P A +++H P    +G  SD+ +  Q + + K  +   Y  
Sbjct: 85  ASAASVIAMAGTKV--SMAPTALMMIHNPLTIAAGNRSDMAKAIQQLDETKESIINAYEI 142

Query: 172 NCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
             G    ++   +D    M+ ++A + G  D+VL
Sbjct: 143 KTGLPRGKIAALMDEQTWMNPNKAIELGFADEVL 176


>gi|237742125|ref|ZP_04572606.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           4_1_13]
 gi|229429773|gb|EEO39985.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
           4_1_13]
          Length = 367

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 38/151 (25%), Positives = 70/151 (46%), Gaps = 6/151 (3%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI----KPPISTFCMGQAASMGSLLLSA 121
           LE      +I+L INSPGG V     IY+ ++         I+ +  G AAS  S L+  
Sbjct: 48  LENYKNVSQINLRINSPGGDVFEASTIYNLLKDFAKVNNIQITGYIDGLAASAASFLVLC 107

Query: 122 GEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVE 181
             K +      A  ++H P     G  +++++  Q +  +K  + +IY        EE+ 
Sbjct: 108 ASKVVMGI--GALFMIHNPLTYAYGNTAELQKQIQLLDTVKESILDIYCTKSKLNREEIA 165

Query: 182 KTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
           + ++ +    A+EA + G VD+++ +   +E
Sbjct: 166 EKMNNEKWFRANEALEAGFVDEIVENDNSLE 196


>gi|2245061|emb|CAB10484.1| Clp proteinase like protein [Arabidopsis thaliana]
 gi|7268455|emb|CAB80975.1| Clp proteinase like protein [Arabidopsis thaliana]
          Length = 241

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 57/159 (35%), Positives = 83/159 (52%), Gaps = 16/159 (10%)

Query: 11  SEDVFLGLVPMVVE---QTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE 67
           S     G+V MV+     +   +   D+ S L K RIV++   +   +  LI A+ L+L+
Sbjct: 79  SSKPKRGVVTMVIPFSKGSAHEQPPPDLASYLFKNRIVYLGMSLVPSVTELILAEFLYLQ 138

Query: 68  AENPQKEISLYINSPG--------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
            E+ +K I LYINS G        G  T   AIYD M ++KPPI T C+G A    +LLL
Sbjct: 139 YEDEEKPIYLYINSTGTTKNGEKLGYDTEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLL 198

Query: 120 SAGEKGMRFALPNARILLHQP-----SGGFSGQASDIER 153
           +AG KG R ALP++ I++ Q           G  SD+++
Sbjct: 199 TAGAKGNRSALPSSTIMIKQVVYNERGSQDRGVVSDLKK 237


>gi|254474347|ref|ZP_05087733.1| peptidase S14, ClpP [Ruegeria sp. R11]
 gi|214028590|gb|EEB69425.1| peptidase S14, ClpP [Ruegeria sp. R11]
          Length = 377

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 66/139 (47%), Gaps = 2/139 (1%)

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           L  LE      +I++ +NS GG    G+AIY+ ++     ++    G AAS  SL+  AG
Sbjct: 31  LEALEELGDDADITVRVNSGGGYTDQGIAIYNALKAHGGEVTVVVDGVAASAASLISMAG 90

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
           ++        A ++LH PSG  SG A +I    + + +I   +  IY +  G   +++ K
Sbjct: 91  DQI--IMRRGATMMLHDPSGFASGMADEIAIAVRALDRIGAVMASIYAEQSGDDPDDLRK 148

Query: 183 TLDRDHIMSASEACDWGVV 201
            +  +  ++  EA   G  
Sbjct: 149 EMKAELWLTGEEAVKRGFA 167


>gi|148727186|ref|YP_001285678.1| p08 [Xanthomonas phage Xop411]
 gi|116583486|gb|ABK00156.1| p08 [Xanthomonas phage Xop411]
          Length = 245

 Score =  114 bits (286), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 76/174 (43%), Gaps = 4/174 (2%)

Query: 43  RIVFVTGQIEDHMATL--ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           R + +   I           AQ+          ++++ I+SPGG + AG+AIY+ +   +
Sbjct: 41  REINIFSVIGRDDLNDGTTSAQIGSFLEAMGPGDVTVNIDSPGGDMFAGLAIYNQLIAHQ 100

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
             ++   +G+AAS  S++  +G++       +A +++H       G A ++   A  +  
Sbjct: 101 GKVTVNVVGRAASAASVIAMSGDQIN--MHTSAFLMIHNCHLVIGGNAKELMSVAAMMRP 158

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
               + +IYV    +  + V + +D +  M+A EA   G  D ++        K
Sbjct: 159 FDSAMADIYVARSSQAKDTVVQMMDNETWMNAEEAVKMGFADSIVTPAAKQPAK 212


>gi|325687744|gb|EGD29765.1| peptidase s14, clpp [Streptococcus sanguinis SK72]
          Length = 232

 Score =  114 bits (286), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 75/165 (45%), Gaps = 4/165 (2%)

Query: 43  RIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           R++ + G I  E  +   +  Q+   E  +    ++L+INSPGG V A   IY+ +   K
Sbjct: 19  RVLHLNGTIASESWVDDDVTPQIFKNELMSGTGPLTLWINSPGGDVFAAAQIYNMLMDYK 78

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
             ++    G AAS  S++  AG        P A +++H P     G + ++E+    + +
Sbjct: 79  DDVTVNIDGIAASAASVIAMAGTTVN--MSPVAMMMIHNPMTVAIGDSKEMEKAIAMLSE 136

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           +K  +   Y      +  ++   +D +   +A +A + G  D +L
Sbjct: 137 VKESILNAYEIKTSLSRVQLSHLMDAESWFNAKKALELGFADSIL 181


>gi|225467642|ref|XP_002267289.1| PREDICTED: similar to ATP-dependent Clp protease proteolytic
           subunit, putative, partial [Vitis vinifera]
          Length = 137

 Score =  114 bits (286), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 42/125 (33%), Positives = 69/125 (55%), Gaps = 8/125 (6%)

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ--------PSGGFSGQAS 149
           ++K  I T C+G      +LLL AG KG R ALP++ I+L Q        P     GQA+
Sbjct: 1   YVKSLIFTLCVGNPWGEAALLLVAGAKGNRSALPSSTIMLKQSCPPINLHPIARLQGQAT 60

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           DI+   +++  +K  L ++Y K+ GK+ E++E  + R    S SE  ++ ++DKVL +  
Sbjct: 61  DIDLARKEVKNVKAELVKLYAKHVGKSPEQIEADIRRPKYFSPSEGVEYSIIDKVLYNER 120

Query: 210 DIEEK 214
             E++
Sbjct: 121 SSEDR 125


>gi|327461145|gb|EGF07478.1| peptidase s14, clpp [Streptococcus sanguinis SK1057]
          Length = 227

 Score =  114 bits (286), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 75/165 (45%), Gaps = 4/165 (2%)

Query: 43  RIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           R++ + G I  E  +   +  Q+   E  +    ++L+INSPGG V A   IY+ +   K
Sbjct: 14  RVLHLNGTIASESWVDDDVTPQIFKNELMSGSGPLTLWINSPGGDVFAAAQIYNMLMDYK 73

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
             ++    G AAS  S++  AG        P A +++H P     G + ++E+    + +
Sbjct: 74  DDVTVNIDGIAASAASVIAMAGTTVN--MSPVAMMMIHNPMTVAIGDSKEMEKAIAMLSE 131

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           +K  +   Y      +  ++   +D +   +A +A + G  D +L
Sbjct: 132 VKESILNAYEIKTSLSRVQLSHLMDAESWFNAKKALELGFADSIL 176


>gi|261880976|ref|ZP_06007403.1| ATP-dependent Clp protease proteolytic subunit [Prevotella
           bergensis DSM 17361]
 gi|270332280|gb|EFA43066.1| ATP-dependent Clp protease proteolytic subunit [Prevotella
           bergensis DSM 17361]
          Length = 346

 Score =  114 bits (286), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 47/165 (28%), Positives = 83/165 (50%), Gaps = 6/165 (3%)

Query: 44  IVFVTGQIEDHMATLICAQLLF--LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP 101
            + + G I D+   +   Q+    + AE+  K I + INS GG V  G+AI++ ++  K 
Sbjct: 15  CILLYGDIGDNYGAVTSGQITRELMAAESAYKNIDIRINSVGGEVYTGIAIFNALRASKA 74

Query: 102 PISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKI 161
            I+ +  G AASM S++   G+    +    AR++LH  SGG  G   D++   + +  +
Sbjct: 75  NITLYVDGVAASMASVIALCGKPV--YMSRYARLMLHSVSGGCYGNKKDLKEVLEQMESL 132

Query: 162 KRRLNEIYVKNCGKTYEEVEKTL--DRDHIMSASEACDWGVVDKV 204
           +  L ++Y +  GK    V+       DH ++A EA   G++D +
Sbjct: 133 EDTLCQMYAERLGKDAAAVKAAYFDGTDHWLTADEALSLGLIDGI 177


>gi|325271030|ref|ZP_08137615.1| hypothetical protein HMPREF9141_2825 [Prevotella multiformis DSM
           16608]
 gi|324986628|gb|EGC18626.1| hypothetical protein HMPREF9141_2825 [Prevotella multiformis DSM
           16608]
          Length = 348

 Score =  114 bits (286), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 6/176 (3%)

Query: 44  IVFVTGQIEDHMATLICAQLLF--LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP 101
            + + G I D   T+  AQ+    + AE   K I + INS GG V  G+AI++ ++  K 
Sbjct: 17  CILLYGDIGDSYGTITSAQITRELMAAEATYKNIDVRINSIGGEVYTGIAIFNALRASKA 76

Query: 102 PISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKI 161
            I+ +  G AASM S++   G+    +    AR++LH  SGG  G   D++     +  +
Sbjct: 77  NITIYVDGVAASMASVIALCGKPV--YMSRYARLMLHSVSGGCYGNTRDMKDMISQMESL 134

Query: 162 KRRLNEIYVKNCGKTYEEVEKTL--DRDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
           +  L ++Y    GK   E++ +     DH ++A EA   G +D +  +    EE +
Sbjct: 135 EDTLCDMYADKLGKDKAEIKSSYFDGTDHWLTAEEAKISGFIDGIYDADPVPEEST 190


>gi|208751271|gb|ACI31244.1| ATP-dependent Clp protease proteolytic subunit [Volvox carteri]
 gi|261888159|gb|ACY06014.1| ATP-dependent Clp protease proteolytic subunit [Volvox carteri f.
           nagariensis]
          Length = 530

 Score =  114 bits (286), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 51/141 (36%), Positives = 82/141 (58%)

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           E   K++ + INS GG V  G+ ++D +QFIK    T  +G AAS  SL L+ G  G R+
Sbjct: 351 EEESKKVFMIINSFGGSVGNGITVHDALQFIKAGSLTLALGVAASAASLALAGGTIGERY 410

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
                  ++HQP GG +GQASDI   +Q+I+KI+  + EIY  +  +   ++ + LDRD 
Sbjct: 411 VTEGCHTMIHQPEGGLNGQASDIWIDSQEIMKIRLDVAEIYSLSTYRPRHKILRDLDRDF 470

Query: 189 IMSASEACDWGVVDKVLMSRI 209
            ++A E   +G+ D++  + +
Sbjct: 471 YLTAMETIYYGLADEIATNEV 491


>gi|315656915|ref|ZP_07909802.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315492870|gb|EFU82474.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 292

 Score =  114 bits (286), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 73/170 (42%), Gaps = 4/170 (2%)

Query: 43  RIVFVTGQIEDHMA--TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           R++ ++G I +       I   +   E       + +++NSPGG V A   IY+ +    
Sbjct: 23  RVLHISGTIAEESWFDDDITPSIFAAELNAGSGPVKIWLNSPGGDVVAAAQIYNMLIDYP 82

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
             ++    G AAS  S+   A         P + +++H P+    G   ++ R    +  
Sbjct: 83  GTVTVNIDGIAASAASV--IAMAATKVAMSPVSMLMIHNPATMAVGDKDELARAMNMLDS 140

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           +K  +   Y +  G +  ++ K +D +  M A  A D G  D++L ++ D
Sbjct: 141 VKESILNAYQEKTGMSRAKLSKLMDAETWMDARAAIDMGFADELLTNQRD 190


>gi|296159099|ref|ZP_06841926.1| peptidase S14 ClpP [Burkholderia sp. Ch1-1]
 gi|295890660|gb|EFG70451.1| peptidase S14 ClpP [Burkholderia sp. Ch1-1]
          Length = 226

 Score =  114 bits (286), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 77/184 (41%), Gaps = 15/184 (8%)

Query: 25  QTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG 84
           + +      DIY  L       + G         I  Q +  E ++ +  ++L INSPGG
Sbjct: 17  RVSNAADGTDIY--LYD----TIGGWYG------IAVQDVIKELKDAKGAVNLRINSPGG 64

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
               G A+   +Q     ++    G AAS  + +  A +         A +++H      
Sbjct: 65  DAFDGRALATAIQQHG-NVTAHIDGLAASAATYVALAAKSVN--IAEGAFMMVHNAWTVA 121

Query: 145 SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            G A+++      + KI   +   Y    GKT +EV+  +D +   +A EA D G+VD +
Sbjct: 122 VGNAAELGDTIAMLQKIDTSIANDYAAKTGKTLDEVKAWMDAETWFTAQEAKDAGLVDNI 181

Query: 205 LMSR 208
           + ++
Sbjct: 182 VAAK 185


>gi|229199634|ref|ZP_04326284.1| Clp protease [Bacillus cereus m1293]
 gi|228583836|gb|EEK42004.1| Clp protease [Bacillus cereus m1293]
          Length = 198

 Score =  114 bits (286), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 66/130 (50%), Gaps = 2/130 (1%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I+++INSPGG V   +AI++ ++  K  ++ +  G AAS GS++  A +K       N  
Sbjct: 13  INIHINSPGGDVFESIAIHNLLKNHKAKVNVYIDGLAASGGSVIAMAADKI--VMPKNTM 70

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           +++H+     +G + D+ + A  + KI   + E Y         E+E  L  +  ++A E
Sbjct: 71  MMIHKAWTYAAGNSEDLRKVANQLEKIDTAVTESYTTRFVGEKNELETLLAEETWLTAEE 130

Query: 195 ACDWGVVDKV 204
              +G  D++
Sbjct: 131 CKTFGFCDEI 140


>gi|153810555|ref|ZP_01963223.1| hypothetical protein RUMOBE_00936 [Ruminococcus obeum ATCC 29174]
 gi|149833734|gb|EDM88815.1| hypothetical protein RUMOBE_00936 [Ruminococcus obeum ATCC 29174]
          Length = 223

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 39/142 (27%), Positives = 73/142 (51%), Gaps = 5/142 (3%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L +    +EI + +NS GG V AG  IY  ++  K  +       A S   ++  AG   
Sbjct: 36  LNSAAVDEEIEVLVNSGGGSVMAGQEIYSALKQKK-NVVIKIQSMAGSAAGVIAMAG--- 91

Query: 126 MRFALPNARILLHQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
                P A I++H  S  G SG   D++++A+ + ++   L   Y +  G++ +E+ K +
Sbjct: 92  KCQMSPVAMIMIHNVSMSGASGDYHDMQKNAEILKQMNSALAAAYTEKSGRSLDEILKLM 151

Query: 185 DRDHIMSASEACDWGVVDKVLM 206
           DR+  ++A++  D+G VD+++ 
Sbjct: 152 DRETWLTANQCLDYGFVDEIMS 173


>gi|325690442|gb|EGD32445.1| peptidase s14, clpp [Streptococcus sanguinis SK115]
          Length = 227

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 75/165 (45%), Gaps = 4/165 (2%)

Query: 43  RIVFVTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           R++ + G I  E  +   +  Q+   E  +    ++L+INSPGG V A   IY+ +   K
Sbjct: 14  RVLHLNGTIASESWVDDDVTPQIFKNELMSGSGPLTLWINSPGGDVFAAAQIYNMLMDYK 73

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
             ++    G AAS  S++  AG        P A +++H P     G + ++ER    + +
Sbjct: 74  DDVTVNIDGIAASAASVIAMAGTTVN--MSPVAMMMIHNPMTVAIGDSKEMERAIAMLSE 131

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           +K  +   Y      +  ++   +D +   +A +A + G  D +L
Sbjct: 132 VKESILNAYEIKTSLSRVQLSHLMDAESWFNAKKALELGFADSIL 176


>gi|126461414|ref|YP_001042528.1| peptidase S14, ClpP [Rhodobacter sphaeroides ATCC 17029]
 gi|126103078|gb|ABN75756.1| peptidase S14, ClpP [Rhodobacter sphaeroides ATCC 17029]
          Length = 282

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 2/142 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           +++ + INSPGG V  G+AIY  ++  K  ++   +G AAS  S++  A +         
Sbjct: 75  RDVVVNINSPGGDVFEGLAIYSLLREHKGHVTVKVLGLAASAASVIAMAADDL--LIARA 132

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
             +++H    G +G    +   A  +      L +IY    G +  E+   LD++  M  
Sbjct: 133 GFLMIHNTWVGAAGDRHALREAADLLEPFDAALADIYAARSGVSAAEISAMLDKETWMGG 192

Query: 193 SEACDWGVVDKVLMSRIDIEEK 214
           SEA   G  D +L S    E++
Sbjct: 193 SEAIAAGFADGLLSSDAVAEDE 214


>gi|260577759|ref|ZP_05845694.1| ClpP protease family protein [Corynebacterium jeikeium ATCC 43734]
 gi|258604154|gb|EEW17396.1| ClpP protease family protein [Corynebacterium jeikeium ATCC 43734]
          Length = 473

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 68/174 (39%), Gaps = 4/174 (2%)

Query: 45  VFVTGQIEDHMA---TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP 101
           + + G I          I A+ +  +      ++++ I+S GG V  G+ I   ++    
Sbjct: 4   ILMYGPIGPDFWEPENAITAKSVMAQLSEISGDVTVRISSGGGDVYEGVDIMTALKNHDG 63

Query: 102 PISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKI 161
            ++      AAS  S +   G         ++ ++LH+      G A D+ +   D+ + 
Sbjct: 64  EVTVIVESLAASAASFIAVGGA-DRVLMRKSSEMMLHRAWTLAEGNADDVRKTLGDLERQ 122

Query: 162 KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
             +L  IY    G   ++    +  +   +A EA   G+ D ++  +    E S
Sbjct: 123 DNKLAAIYAGKAGGEVQDWLDAMSAETWYTAEEAVAAGLADGIVAEKSSAPEPS 176


>gi|116618740|ref|YP_819111.1| protease subunit of ATP-dependent Clp protease [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|116097587|gb|ABJ62738.1| Protease subunit of ATP-dependent Clp protease [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 229

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 65/134 (48%), Gaps = 2/134 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
            ++ + INS GG V A   IY  ++     + T     A S  S++  AG+       P 
Sbjct: 41  SDLEIGINSGGGEVDAANEIYTALRNYPGKVITQIESSAYSAASIIAMAGDTVQ--ISPV 98

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A++++H  S    G  +D+++ +  +    + + + Y    G+  +E    +D++  ++A
Sbjct: 99  AQLMIHNASTYAGGNHNDLDKTSNALKSTDKAIAKAYSVKTGRPVDEFLALMDKETWINA 158

Query: 193 SEACDWGVVDKVLM 206
            +A + G+VD+V+ 
Sbjct: 159 DDALELGLVDEVMT 172


>gi|49483694|ref|YP_040918.1| phage protease [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49241823|emb|CAG40515.1| phage protease [Staphylococcus aureus subsp. aureus MRSA252]
          Length = 257

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 70/141 (49%), Gaps = 3/141 (2%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L+      EI ++INS GG V  G AIY+ ++     I+ +    AAS+ S++  +G+  
Sbjct: 45  LDELGDISEIDVHINSSGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTI 104

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCG-KTYEEVEKTL 184
             F   N+ +++H       G A ++ + A  + K     N  Y+        E +++ L
Sbjct: 105 --FMHKNSFLMIHNSWVMTVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQML 162

Query: 185 DRDHIMSASEACDWGVVDKVL 205
           D +  ++A EA  +G++D++L
Sbjct: 163 DTETWLTAEEALSFGLIDEIL 183


>gi|313499018|gb|ADR60384.1| Peptidase S14 ClpP [Pseudomonas putida BIRD-1]
          Length = 285

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 79/144 (54%), Gaps = 3/144 (2%)

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           ++++++YINSPGG +  G+AIY+ +Q     ++T  +G AAS  S++  AG+K  R    
Sbjct: 66  ERDVTVYINSPGGDMFEGIAIYNRLQEHSHEVTTKVLGMAASAASIVFLAGKK--REVAS 123

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           +A +++H      +G  + +   A D+ +    + ++Y +  G++ E++ + +D +  + 
Sbjct: 124 SAFLMIHNCWTWLAGNRNYLRDIANDMEEFDAAMADLYAETSGQSAEDMAELMDDETYIR 183

Query: 192 ASEACDWGVVDKVLMSRIDIEEKS 215
              A + G+   +L S  ++ E+ 
Sbjct: 184 GKRAVELGLATGLLSS-TEVTERE 206


>gi|149882820|ref|YP_001294799.1| Clp protease [Microbacterium phage Min1]
 gi|148763451|gb|ABR10469.1| Clp protease [Microbacterium phage Min1]
          Length = 399

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 73/159 (45%), Gaps = 3/159 (1%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQ-KEISLYINSPGGVVTAGMAIYDTMQFIKPPI 103
           V++  +I +     I  + L  E       E++++INSPGG    G+ I + ++  K  +
Sbjct: 32  VYIYDEIGESWWGGIAPKALVDEITALDVAEMTVHINSPGGAAWDGITIMNALRAHKAQV 91

Query: 104 STFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKR 163
                G AAS  S++   G+         A++++H  SGG  G A+++E  A  + K+  
Sbjct: 92  HVVVDGLAASAASVIAMGGDTIT--MNRGAQMMIHDASGGVWGNAAEVEAVATILHKLSD 149

Query: 164 RLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
            + + Y    G T E+    +  +   +A EA   G+ D
Sbjct: 150 SIADTYAARTGGTREQWRAVMKDEAWYTAEEAVAAGLAD 188


>gi|227875044|ref|ZP_03993189.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mobiluncus
           mulieris ATCC 35243]
 gi|306817331|ref|ZP_07451076.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mobiluncus
           mulieris ATCC 35239]
 gi|227844322|gb|EEJ54486.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mobiluncus
           mulieris ATCC 35243]
 gi|304649772|gb|EFM47052.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mobiluncus
           mulieris ATCC 35239]
          Length = 292

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 73/170 (42%), Gaps = 4/170 (2%)

Query: 43  RIVFVTGQIEDHMA--TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           R++ ++G I +       I   +   E       +++++NSPGG V A   IY+ +    
Sbjct: 22  RVLRISGTIAEESWFDDDITPSIFASELNAGSGPVTIWLNSPGGDVVAAAQIYNMLIDYP 81

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
             ++    G AAS  S+   A         P + +++H P+    G   ++ R    +  
Sbjct: 82  GEVTVNIDGIAASAASV--IAMAATKVAMSPVSMLMIHNPATMAVGDKDELARAMSMLDS 139

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           +K  +   Y +    +  ++ K +D +  M A  A D G  D++L ++ D
Sbjct: 140 VKESILNAYQEKTNLSRAKLSKLMDAETWMDARAAIDMGFADELLTNQRD 189


>gi|115468790|ref|NP_001057994.1| Os06g0598200 [Oryza sativa Japonica Group]
 gi|21327370|gb|AAM48275.1|AC122148_28 Putative ATP-dependent Clp protease proteolytic subunit [Oryza
           sativa Japonica Group]
 gi|31431491|gb|AAP53264.1| ATP-dependent Clp protease proteolytic subunit, putative [Oryza
           sativa Japonica Group]
 gi|113596034|dbj|BAF19908.1| Os06g0598200 [Oryza sativa Japonica Group]
          Length = 115

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 1/98 (1%)

Query: 114 MGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKN 172
           M S +L  GE   R A P+ARI+LHQP S  +  +  +     +++ K++  +  +Y   
Sbjct: 1   MASFILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFLLEVEELHKVREMITRVYALR 60

Query: 173 CGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
            GK +  V + ++RD  MSA EA  +G+VD V    +D
Sbjct: 61  TGKPFWVVSEDMERDVFMSADEAKAYGLVDIVGDEMLD 98


>gi|119383115|ref|YP_914171.1| peptidase S14, ClpP [Paracoccus denitrificans PD1222]
 gi|119383741|ref|YP_914797.1| peptidase S14, ClpP [Paracoccus denitrificans PD1222]
 gi|119372882|gb|ABL68475.1| peptidase S14, ClpP [Paracoccus denitrificans PD1222]
 gi|119373508|gb|ABL69101.1| peptidase S14, ClpP [Paracoccus denitrificans PD1222]
          Length = 280

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 69/161 (42%), Gaps = 8/161 (4%)

Query: 47  VTGQI--EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
           +      E   A  + A L     +  ++++ + INSPGG    G+AIY+T++     ++
Sbjct: 51  IGQDWWGEGVTAKRVAAALR----QIGKRDVVVNINSPGGDFFEGLAIYNTLREHPAKVT 106

Query: 105 TFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRR 164
              +G AAS  S++  AG++          +++H      +G    +   A  +      
Sbjct: 107 VKILGLAASAASVIAMAGDEV--LIGRAGFLMIHNTWVVAAGDRHALREVADWLEPFDSA 164

Query: 165 LNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
             +IY    G   +++ + LDR+  +    A D G  D +L
Sbjct: 165 SVDIYAARTGLDGKKLGQMLDRETWIGGQSAVDQGFADSLL 205


>gi|167753873|ref|ZP_02426000.1| hypothetical protein ALIPUT_02158 [Alistipes putredinis DSM 17216]
 gi|167658498|gb|EDS02628.1| hypothetical protein ALIPUT_02158 [Alistipes putredinis DSM 17216]
          Length = 335

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 4/142 (2%)

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           E    EI + I S GG V   + IY+ +  +   I T C G  AS  +++  A  +G R 
Sbjct: 94  EIDAPEIVVNIRSTGGDVNDALLIYEALSSLDGHIVTRCYGYTASAATVIAQAASEGCRE 153

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD- 187
              +A  L+H       G A ++      + K   RL E+Y    G+T EE    +  + 
Sbjct: 154 ISAHALYLIHNSICTAEGNAEELATRIDLLRKTDARLAEVYAARSGRTPEEFTLLMAENN 213

Query: 188 ---HIMSASEACDWGVVDKVLM 206
                +S  EA   G+VD+++ 
Sbjct: 214 GSGRWLSPQEALAAGLVDRIIE 235


>gi|257870381|ref|ZP_05650034.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
 gi|257804545|gb|EEV33367.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
          Length = 238

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 80/178 (44%), Gaps = 7/178 (3%)

Query: 42  ERIVFVTGQIEDHMATL---ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           + I+ ++G I+    +    I A+L+    +    ++ + +NS GG V  G+ IY+ ++ 
Sbjct: 23  KHILTLSGVIQKRYWSDDKYIDAKLIRDNLDGVTDDVVIRLNSNGGDVFQGVEIYNYLKN 82

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
               I+   M  AAS  + + +  ++           ++H+      G  +DI++  Q +
Sbjct: 83  HSSHITVEVMATAASAATFICAGADEV--IMNVGTSFMIHEAETVGWGNKTDIKKTLQAL 140

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
             I   +  IY    G++ +++   ++     +A EA  +G  D V   R + +E+ +
Sbjct: 141 ETIDDSILSIYADKTGQSKDQITTWINEARWFTADEAVKFGFADSV--KRAEPQEEPQ 196


>gi|295428018|ref|ZP_06820650.1| phage protease [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|295128376|gb|EFG58010.1| phage protease [Staphylococcus aureus subsp. aureus EMRSA16]
          Length = 261

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 70/141 (49%), Gaps = 3/141 (2%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L+      EI ++INS GG V  G AIY+ ++     I+ +    AAS+ S++  +G+  
Sbjct: 49  LDELGDISEIDVHINSSGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTI 108

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCG-KTYEEVEKTL 184
             F   N+ +++H       G A ++ + A  + K     N  Y+        E +++ L
Sbjct: 109 --FMHKNSFLMIHNSWVMTVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQML 166

Query: 185 DRDHIMSASEACDWGVVDKVL 205
           D +  ++A EA  +G++D++L
Sbjct: 167 DTETWLTAEEALSFGLIDEIL 187


>gi|167757874|ref|ZP_02430001.1| hypothetical protein CLOSCI_00205 [Clostridium scindens ATCC 35704]
 gi|167664528|gb|EDS08658.1| hypothetical protein CLOSCI_00205 [Clostridium scindens ATCC 35704]
          Length = 199

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 3/143 (2%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I+++INSPGG   A   IY+ +      ++    G AAS  S++  AG K      P +
Sbjct: 6   DITVWINSPGGDCVAAAQIYNMLMDYPHNVTVKIDGIAASAASVIAMAGTKV--LVSPVS 63

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H P     G  +++++    +  +K  +   Y    G +  ++   +D +  M A+
Sbjct: 64  MMMIHNPMTVAMGDTAEMQKAIDMLGSVKDSIINAYEIKTGLSRAKLSHLMDAETWMDAN 123

Query: 194 EACDWGVVDKVLMSRIDIEEKSK 216
           +A + G  D++L  R D+ E  +
Sbjct: 124 KAVELGFADEIL-KRSDVLEDME 145


>gi|264679702|ref|YP_003279609.1| peptidase S14, ClpP [Comamonas testosteroni CNB-2]
 gi|262210215|gb|ACY34313.1| peptidase S14, ClpP [Comamonas testosteroni CNB-2]
          Length = 697

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 69/166 (41%), Gaps = 4/166 (2%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKE-ISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           I+      E        A+    E      + I++ INS GG V  G+AIY+ M+  K  
Sbjct: 30  ILIYGDIGESWWDETTSAKSFLAELSALDVDAITVRINSLGGSVPDGIAIYNAMKRHKAT 89

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIK 162
           I+    G A S+ SL+   G+     +  NA +++H P    +G ++++   A  +    
Sbjct: 90  ITVEVDGIAYSIASLIAMGGDTVNMAS--NALMMIHAPWTYAAGNSAELRELADQLDTWA 147

Query: 163 RRLNEIYVKNCGKTYEEVEKTLD-RDHIMSASEACDWGVVDKVLMS 207
             ++  Y    G     +    D +DH  +A EA     +D +  S
Sbjct: 148 NAMSTSYAAKTGDQAGALALLTDGKDHFFTAEEALALKFIDAITDS 193


>gi|304390288|ref|ZP_07372241.1| protease subunit of ATP-dependent Clp protease family protein
           [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|304326044|gb|EFL93289.1| protease subunit of ATP-dependent Clp protease family protein
           [Mobiluncus curtisii subsp. curtisii ATCC 35241]
          Length = 290

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 74/170 (43%), Gaps = 4/170 (2%)

Query: 43  RIVFVTGQIEDHMA--TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           R++ ++G I +       I   +   E       +++++NSPGG V A   IY+ +    
Sbjct: 22  RVLRISGTIAEESWFDDDITPSIFASELNAGSGPVTIWLNSPGGDVVAAAQIYNMLIDYP 81

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
             ++    G AAS  S+   A         P + +++H P+    G   ++ R    +  
Sbjct: 82  SHVTVNIDGIAASAASV--IAMAASTVAMSPVSMLMIHNPATMAVGDKDELARAMSMLDS 139

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           +K  +   Y +  G +  ++ K +D +  M A  A D G  D++L ++ D
Sbjct: 140 VKESILNAYQEKTGMSRAKLSKLMDAETWMDARAAIDMGFADELLTNQRD 189


>gi|91794597|ref|YP_564248.1| peptidase S14, ClpP [Shewanella denitrificans OS217]
 gi|91716599|gb|ABE56525.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella
           denitrificans OS217]
          Length = 667

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 4/143 (2%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A     ++  YI S GG V  GMAIY+ +       S      AASM S++  A +  
Sbjct: 40  LRAMGKITQLKAYIQSGGGDVMDGMAIYNILARWPCQKSICIESVAASMASVICMAFDTV 99

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKN-CGK-TYEEVEKT 183
                 NA +++H   GG  G A D+  +A  + K +  + + Y     GK + E++ + 
Sbjct: 100 --IMPSNAFLMIHSNWGGAVGTADDLREYADLLDKWRSSMGKAYQDKAAGKLSDEQLAQF 157

Query: 184 LDRDHIMSASEACDWGVVDKVLM 206
              D  ++A EA   G+ D+V+ 
Sbjct: 158 FKEDTWLTAQEAVALGLADEVIE 180


>gi|294795017|ref|ZP_06760152.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP
           [Veillonella sp. 3_1_44]
 gi|294454379|gb|EFG22753.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP
           [Veillonella sp. 3_1_44]
          Length = 363

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 71/157 (45%), Gaps = 6/157 (3%)

Query: 52  EDHMATLICAQLLFLEAENPQ-KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQ 110
                  I  +    +  +    ++++ INS GG V A  AI++ ++     ++    G 
Sbjct: 33  TSWWGDEITPREFASDLASCNGNDLTMRINSGGGDVFAAQAIHNMIKAYAGKVTAHIDGL 92

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG--QASDIERHAQDIVKIKRRLNEI 168
            AS  +++  A +K       NA  ++H PS        A  + + A  +  +K+ +  +
Sbjct: 93  CASAATIIACAADKV--IMPRNALYMIHNPSVYLGDSFDADGLTKMANYLASVKQTIANV 150

Query: 169 YVKNCG-KTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           Y+      T E+V+  +D +  ++A EA  +G++D+V
Sbjct: 151 YLSRSDVLTSEQVKTLMDDETWLTADEAKSYGLIDEV 187


>gi|255974949|ref|ZP_05425535.1| clp protease domain-containing protein [Enterococcus faecalis T2]
 gi|255967821|gb|EET98443.1| clp protease domain-containing protein [Enterococcus faecalis T2]
          Length = 253

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 3/147 (2%)

Query: 64  LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           L L   N  +++ + INS GG+V  G  IY  ++  +  +    +  A S  S++  AG 
Sbjct: 32  LDLLPANHNEDVEVTINSYGGLVDMGNEIYTALRSYEGHVKVNVV-MAGSAASIIAMAGN 90

Query: 124 KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
                  P  +I++H  + G  G    +++ ++ + K    L   YV   GK  EE+   
Sbjct: 91  TV--AISPVGQIMIHNVAMGAGGDYHTMDKASEILQKANNSLANAYVSKTGKAKEEILAL 148

Query: 184 LDRDHIMSASEACDWGVVDKVLMSRID 210
           +D++  ++A EA + G VD+++    +
Sbjct: 149 MDKETWLTAEEAVENGFVDEIMFENTE 175


>gi|161899389|ref|XP_001712921.1| Clp Protease copy 4 [Bigelowiella natans]
 gi|75756415|gb|ABA27309.1| Clp Protease copy 4 [Bigelowiella natans]
          Length = 183

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 43/177 (24%), Positives = 88/177 (49%), Gaps = 8/177 (4%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD-- 94
           + LL++ I++++ +I+ +      + +L+L+ +N  + I+LYIN  G       + YD  
Sbjct: 7   TFLLEKNILYLSTEIDFNSTKSFISTILYLKNKNSNETINLYINGKGSSYYNLFSRYDQI 66

Query: 95  -----TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG-QA 148
                 +  +K  +ST  +G A +   L+ S G K  R+ALP++ + +          Q 
Sbjct: 67  ISMHDIINSMKSKLSTLVLGIAFNEMCLISSYGSKDYRYALPSSLLYIDVFMNSIGSSQT 126

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           SDI     ++ K    +  I+ K+  +   E+   + R   M++ EA ++G++DK++
Sbjct: 127 SDIGIKKSELYKFNNLIINIFSKHTMRHPTEITSYMTRPFHMTSVEALNYGIIDKII 183


>gi|300766160|ref|ZP_07076125.1| ClpP protease [Listeria monocytogenes FSL N1-017]
 gi|300513118|gb|EFK40200.1| ClpP protease [Listeria monocytogenes FSL N1-017]
          Length = 265

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 69/155 (44%), Gaps = 2/155 (1%)

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
           CA+ +     N   E+ ++INS GG V AG  IY  ++     +    +G AAS  S++ 
Sbjct: 28  CAKDINEALANASGEVEVWINSNGGDVFAGSEIYTALKSYNGNVVVKIVGMAASAASVIA 87

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
            AG +      P  ++++H    G  G   ++++ ++        +   Y    GKT EE
Sbjct: 88  MAGNEV--LISPTGQMMIHNVQYGGRGDYRELKKASEIAQNANISIANAYQLKTGKTLEE 145

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           +   +  +  +++ +A + G+ D V+        K
Sbjct: 146 LLNMMGEETWLNSQQAVELGLADGVMFQENSETPK 180


>gi|307285457|ref|ZP_07565596.1| Clp protease [Enterococcus faecalis TX0860]
 gi|306502681|gb|EFM71946.1| Clp protease [Enterococcus faecalis TX0860]
          Length = 257

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 3/147 (2%)

Query: 64  LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           L L   N  +++ + INS GG+V  G  IY  ++  +  +    +  A S  S++  AG 
Sbjct: 36  LDLLPANHNEDVEVTINSYGGLVDMGNEIYTALRSYEGHVKVNVV-MAGSAASIIAMAGN 94

Query: 124 KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
                  P  +I++H  + G  G    +++ ++ + K    L   YV   GK  EE+   
Sbjct: 95  TV--AISPVGQIMIHNVAMGAGGDYHTMDKASEILQKANNSLANAYVSKTGKAKEEILAL 152

Query: 184 LDRDHIMSASEACDWGVVDKVLMSRID 210
           +D++  ++A EA + G VD+++    +
Sbjct: 153 MDKETWLTAEEAVENGFVDEIMFENTE 179


>gi|262047939|ref|ZP_06020882.1| phage Clp-protease [Lactobacillus crispatus MV-3A-US]
 gi|260571752|gb|EEX28330.1| phage Clp-protease [Lactobacillus crispatus MV-3A-US]
          Length = 241

 Score =  111 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 2/149 (1%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
            L    L     +   ++I+L INSPGG + AG  +Y  ++     ++   +GQA S  S
Sbjct: 32  NLTPDDLKQSLNDANGQDITLEINSPGGYIDAGSEMYTDLKKYPGNVTAQVVGQACSAAS 91

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +  A +K      P A++++H+ S G  G   D+    Q +  + +   ++Y K  G  
Sbjct: 92  WIALAADKVE--MSPTAQMMIHRVSVGVEGNVDDLTSALQSLDSMDQTYVDLYSKRTGLD 149

Query: 177 YEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            +E+ + +     M+A +A D G  D ++
Sbjct: 150 KQEIYRMMCATTWMNAKQAVDKGFADSIM 178


>gi|253795704|ref|YP_003038800.1| putative ATP-dependent Clp protease proteolytic subunit [Candidatus
           Hodgkinia cicadicola Dsem]
 gi|253740012|gb|ACT34347.1| putative ATP-dependent Clp protease proteolytic subunit [Candidatus
           Hodgkinia cicadicola Dsem]
          Length = 160

 Score =  111 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 51/162 (31%), Positives = 89/162 (54%), Gaps = 2/162 (1%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPI 103
           ++ V G+I    A    ++LL   +    + + L I+SPGG + AGM +YD +Q +   +
Sbjct: 1   MLMVAGEITSKRALEARSKLLKTASTR--RVLKLLIDSPGGEIDAGMGLYDALQAVAADV 58

Query: 104 STFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKR 163
            T C+GQA S+ SLLL+ G++G R+   +  + LH P+    G A  + +HA   ++ + 
Sbjct: 59  ETGCVGQAHSIASLLLACGKRGKRWCAASCSVSLHWPTSSAFGSADCVLQHASSALEARA 118

Query: 164 RLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
              + Y+K+C +   E+E+ +      SA  A  WG+VD+V+
Sbjct: 119 LAVKAYMKHCNRRLAEIEEAMSAGTCASAWRAAAWGLVDRVV 160


>gi|42391864|dbj|BAD08696.1| putative ClpP protease [Delftia acidovorans]
          Length = 281

 Score =  111 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 12/188 (6%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P V    +  E S  IY  + +        +     A  I A L  + A    +++++ +
Sbjct: 32  PEVRASASDAETSISIYDSIGEN------WEGTGVTAKRIGAALRNIGA----RDVTVNL 81

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG    GMAIY+ ++  K  ++   +G AAS+ S++  AG++        + +++H 
Sbjct: 82  NSPGGDFFEGMAIYNLLREHKAKVTIRVLGVAASVASVIAMAGDEI--LMGDGSFLMIHN 139

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
                 G   D+   A  +      +  +Y    G T  E    +DR+  + A +A D G
Sbjct: 140 AWAVAVGNRHDMTDTAAVLAPFDAAMAALYAHRSGITEAEAAMLMDRETWIGAQQAVDDG 199

Query: 200 VVDKVLMS 207
               +L S
Sbjct: 200 FASGLLPS 207


>gi|326692818|ref|ZP_08229823.1| protease subunit of ATP-dependent Clp protease [Leuconostoc
           argentinum KCTC 3773]
          Length = 240

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 64/146 (43%), Gaps = 4/146 (2%)

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
            AQ+  L   +   ++ + I S GG V +   IY  ++  K  ++    G AAS  S++ 
Sbjct: 33  VAQI--LNDGDDDDDVEVNIASNGGDVFSASEIYTMLRQSKANVTVNIQGLAASAASVIA 90

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
            AG K      P A++++HQ S    G   D+      +  I + +   Y    G    +
Sbjct: 91  MAGNKVN--ISPTAQLMIHQASSYGGGNKDDLAHEINVLDGIDKSIASAYESKTGMPQGD 148

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVL 205
           +   + ++  + A EA D G  D+++
Sbjct: 149 LLNMMAQETWIGAQEAVDKGFADEIM 174


>gi|315654944|ref|ZP_07907849.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
 gi|315490905|gb|EFU80525.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
          Length = 288

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 71/166 (42%), Gaps = 4/166 (2%)

Query: 42  ERIVFVTGQIEDHMA--TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           ER++ + G I +       I   L   E       +++++NSPGG V A   IY+ +   
Sbjct: 21  ERVLRINGVIAEESWLDDDITPTLFASELNAGSGPVTIWLNSPGGDVVAAARIYNMLLDY 80

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
              ++    G AAS  S  + A         P + +++H P+    G  +++ R    + 
Sbjct: 81  PGKVTVNIDGIAASAAS--VIAMAASTVAMSPVSMLMIHNPATLAMGDKTELSRALDMLE 138

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            +K  +   Y    G +  ++ K +D +  M A  A D G  D++L
Sbjct: 139 SVKDSIINAYQLKTGLSRAKLSKLMDAETWMDARAAIDLGFADELL 184


>gi|307271305|ref|ZP_07552584.1| Clp protease [Enterococcus faecalis TX0855]
 gi|306512054|gb|EFM81045.1| Clp protease [Enterococcus faecalis TX0855]
          Length = 254

 Score =  111 bits (278), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 68/140 (48%), Gaps = 3/140 (2%)

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
             +++ + INS GG+V  G  IY  ++  +  +    +  A S  S++  AG K      
Sbjct: 40  NNEDVEVTINSNGGLVDMGNEIYTALRSYEGHVKVNIV-MAGSAASIIAMAGNKV--AIS 96

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           P  +I++H  + G  G    +++ ++ + K  + L   YV   GK  EE+   +D++  +
Sbjct: 97  PVGQIMIHNVAMGAGGDYHTMDKASEILQKANKSLANAYVSKTGKAKEEILALMDKETWL 156

Query: 191 SASEACDWGVVDKVLMSRID 210
           +A EA + G  D+++    +
Sbjct: 157 TAEEAVENGFADEIMFENTE 176


>gi|187763126|ref|YP_001876601.1| ATP-dependent clp protease proteolytic subunit [Welwitschia
           mirabilis]
 gi|163311656|gb|ABY26814.1| ATP-dependent clp protease proteolytic subunit [Welwitschia
           mirabilis]
          Length = 254

 Score =  111 bits (278), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 56/183 (30%), Positives = 100/183 (54%), Gaps = 5/183 (2%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE----AENPQKEISLYINSPGGVVTAG 89
           D+   +  +R VF+ G + +    +I A L +      AE   + + +YINS GG    G
Sbjct: 6   DLMDLMTVQRCVFMFGPLTEEGGGVILATLFYYFFNDVAEYRNRPVFVYINSLGGAFMMG 65

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQ-A 148
           + I+DTM  IK  + T  +G  AS G+L L+AG +G+R A PN+ I+LHQPS       A
Sbjct: 66  LTIHDTMILIKERVFTIALGMVASTGTLTLTAGTRGIRHAAPNSLIMLHQPSADLDNTSA 125

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           S+  + ++++ +++R++ + Y    G + + ++  LD+   MS   A +  +VD V + +
Sbjct: 126 SEFVKESEEVNQLRRKMVQSYAIRTGHSEQFIDICLDKPLFMSPRTAWNLNLVDNVFVPK 185

Query: 209 IDI 211
            ++
Sbjct: 186 WEL 188


>gi|257078066|ref|ZP_05572427.1| phage protein [Enterococcus faecalis JH1]
 gi|256986096|gb|EEU73398.1| phage protein [Enterococcus faecalis JH1]
          Length = 253

 Score =  111 bits (278), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 70/147 (47%), Gaps = 3/147 (2%)

Query: 64  LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           L L   N  +++ + INS GG+V  G  IY  ++  +  +    +  A S  S++  AG 
Sbjct: 32  LDLLPANHNEDVEVTINSNGGLVDMGNEIYTALRSYEGHVKVNIV-MAGSAASIIAMAGN 90

Query: 124 KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
                  P  +I++H  + G  G    +++ ++ + K  + L   YV   GK  EE+   
Sbjct: 91  TV--AISPVGQIMIHNVAMGAGGDYHTMDKASEILQKANKSLANAYVSKTGKAKEEILAL 148

Query: 184 LDRDHIMSASEACDWGVVDKVLMSRID 210
           +D++  ++A EA + G  D+++    +
Sbjct: 149 MDKETWLTAEEAVENGFADEIMFENTE 175


>gi|125624869|ref|YP_001033352.1| hypothetical protein llmg_2097 [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|290891540|ref|ZP_06554597.1| hypothetical protein AWRIB429_1987 [Oenococcus oeni AWRIB429]
 gi|124493677|emb|CAL98664.1| conserved hypothetical protein [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|290478793|gb|EFD87460.1| hypothetical protein AWRIB429_1987 [Oenococcus oeni AWRIB429]
 gi|300071664|gb|ADJ61064.1| ATP dependent Clp protease [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 234

 Score =  111 bits (278), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 2/135 (1%)

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
             +EI L I S GG V A   IY  ++    P++    G AAS  S++  AG+       
Sbjct: 40  DDEEIVLNIASNGGDVFAASEIYTAIKMNGKPVTVNIQGLAASAASVIAMAGDTVN--IS 97

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           P A++++H+   G  G A D E+ A+ +  + + +   Y    G    ++ + +  +  M
Sbjct: 98  PTAQLMIHKAMSGSQGNADDFEQEAKVLNGVDQSIAAAYELKTGMKQSDLLQLMSNETWM 157

Query: 191 SASEACDWGVVDKVL 205
           +A +A D G  D ++
Sbjct: 158 TAQDAVDKGFADNIM 172


>gi|331701878|ref|YP_004398837.1| peptidase S14 ClpP [Lactobacillus buchneri NRRL B-30929]
 gi|329129221|gb|AEB73774.1| peptidase S14 ClpP [Lactobacillus buchneri NRRL B-30929]
          Length = 233

 Score =  111 bits (278), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 67/138 (48%), Gaps = 2/138 (1%)

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           +    + I   INSPGG V AG  IY  ++     +    +G AAS  S++  AG+    
Sbjct: 37  STANGQNIVAEINSPGGDVFAGSEIYTALKNYTGNVEVDIVGLAASAASVIAMAGDTIK- 95

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
              P A++++H+ S    G A D+    Q +    + +  +YV+  G   + V + + ++
Sbjct: 96  -ISPTAQLMIHRASTVSQGNADDLSSDLQGLNSTDQSIANVYVQRTGLDPQTVMQMMAKE 154

Query: 188 HIMSASEACDWGVVDKVL 205
             ++A +A + G  D+++
Sbjct: 155 TYINAKDAVEQGFADEMM 172


>gi|220983435|dbj|BAH11204.1| ATP-dependent Clp protease proteolytic subunit [Welwitschia
           mirabilis]
          Length = 254

 Score =  111 bits (278), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 56/183 (30%), Positives = 100/183 (54%), Gaps = 5/183 (2%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE----AENPQKEISLYINSPGGVVTAG 89
           D+   +  +R VF+ G + +    +I A L +      AE   + + +YINS GG    G
Sbjct: 6   DLMDLMTVQRCVFMFGPLTEEGGGVILATLFYYFFNDVAEYRNRPVFVYINSLGGAFMMG 65

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQ-A 148
           + I+DTM  IK  + T  +G  AS G+L L+AG +G+R A PN+ I+LHQPS       A
Sbjct: 66  LTIHDTMILIKERVFTIALGMVASTGTLTLTAGTRGIRHAAPNSLIMLHQPSADLDNTSA 125

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           S+  + ++++ +++R++ + Y    G + + ++  LD+   MS   A +  +VD V + +
Sbjct: 126 SEFVKESEEVNQLRRKMVQSYAIRTGHSEQFIDICLDKPLFMSPRTAWNLNLVDNVFVPK 185

Query: 209 IDI 211
            ++
Sbjct: 186 WEL 188


>gi|218235172|ref|YP_002367332.1| Clp protease [Bacillus cereus B4264]
 gi|218163129|gb|ACK63121.1| Clp protease [Bacillus cereus B4264]
          Length = 197

 Score =  111 bits (278), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 77/136 (56%), Gaps = 6/136 (4%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L   + +  +++Y+NS GG V AG+AIY+ ++  K   + +  G AAS+ S++  AG+  
Sbjct: 9   LGQLDDKSNLNIYVNSGGGSVFAGLAIYNMLKRNKAQKTVYVDGVAASIASVIALAGD-- 66

Query: 126 MRFALP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC--GKTYEEVEK 182
            R  +P NA +++H+P    +G A D  + A+D+  I+  +  +Y +N   G   EE+++
Sbjct: 67  -RVVVPSNAFLMIHKPWTYAAGNAIDFRKAAEDLDNIESGIMNVYKENLKEGIEIEEIQQ 125

Query: 183 TLDRDHIMSASEACDW 198
            +D +  +S  EA  +
Sbjct: 126 LVDAETWLSGEEAEKY 141


>gi|260579082|ref|ZP_05846980.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Corynebacterium jeikeium ATCC 43734]
 gi|258602767|gb|EEW16046.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Corynebacterium jeikeium ATCC 43734]
          Length = 255

 Score =  111 bits (278), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 66/156 (42%), Gaps = 2/156 (1%)

Query: 51  IEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQ 110
            E      I   L   E      +++++INSPGG V A   IY+ +      +     G 
Sbjct: 9   EESWFDDDITPALFASELAAGSGDVTVWINSPGGDVVAAAQIYNMLLDYPGHVKVCIDGI 68

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYV 170
           AAS  S++  AGE  +    P + +++H P+    G A ++ R    +  +K  +   Y 
Sbjct: 69  AASAASVIAMAGE--VVSMSPVSMLMIHNPATLAVGDADELGRAIDMLAAVKESIINAYE 126

Query: 171 KNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
              G +  ++ + +D++  M A  A   G  D  L 
Sbjct: 127 LKTGMSRAKLARLMDQETWMDARAAIAMGFADDYLT 162


>gi|150391721|ref|YP_001321770.1| peptidase S14, ClpP [Alkaliphilus metalliredigens QYMF]
 gi|149951583|gb|ABR50111.1| peptidase S14, ClpP [Alkaliphilus metalliredigens QYMF]
          Length = 232

 Score =  111 bits (278), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 75/176 (42%), Gaps = 7/176 (3%)

Query: 43  RIVFVTG--QIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           R +++ G    +      +  +    E    + +I +++NSPGG   A   IY  +   K
Sbjct: 16  RTLYLDGVIAEDSWFDDDVTPKAFKAELTAGEGDIVIWLNSPGGDCIAASQIYAMLMDYK 75

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
             ++    G AAS  S++  AG        P A +++H P     G + ++++    + +
Sbjct: 76  GTVTVKIDGIAASAASVIAMAGTTV--LMAPTALMMVHNPLTVAIGDSEEMKKAIAMLSE 133

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM---SRIDIEE 213
           +K  +   Y    G++  ++   +D +  ++  +A + G  D +L     R   E+
Sbjct: 134 VKESIINAYEIKTGQSRTKLSHLMDAETWLNGKKAIELGFADGILEDEKKRNQTED 189


>gi|311107208|ref|YP_003980061.1| Clp protease family protein [Achromobacter xylosoxidans A8]
 gi|310761897|gb|ADP17346.1| Clp protease family protein [Achromobacter xylosoxidans A8]
          Length = 279

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 63/134 (47%), Gaps = 2/134 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           +++++ +NSPGG    G+AIY+ ++  K  ++   +G AAS  S++  AG+         
Sbjct: 75  RDVTVNVNSPGGNFFEGVAIYNALREHKAKVTIKVLGLAASAASVIAMAGDDI--LMGQG 132

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           + +++H       G   D+   A  +      + ++Y    G T ++    +D++  + A
Sbjct: 133 SFLMIHNAWAVAIGNRHDLVDAAAKLEPFDEAMAQVYAARTGLTSKQAAALMDKETWIGA 192

Query: 193 SEACDWGVVDKVLM 206
            +A + G    +L 
Sbjct: 193 DQAVEDGFATGLLD 206


>gi|227522327|ref|ZP_03952376.1| S14 family endopeptidase ClpP [Lactobacillus hilgardii ATCC 8290]
 gi|227090534|gb|EEI25846.1| S14 family endopeptidase ClpP [Lactobacillus hilgardii ATCC 8290]
          Length = 235

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 67/138 (48%), Gaps = 2/138 (1%)

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           +    + I   INSPGG V AG  IY  ++     +    +G AAS  S++  AG+    
Sbjct: 39  STANGQNIVAEINSPGGDVFAGSEIYTALKNYTGNVEVDIVGLAASAASVIAMAGDTIK- 97

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
              P A++++H+ S    G A D+    Q +    + +  +YV+  G   + V + + ++
Sbjct: 98  -ISPTAQLMIHRASTVSQGNADDLSSDLQGLNSTDQSIANVYVQRTGLDPQTVMQMMAKE 156

Query: 188 HIMSASEACDWGVVDKVL 205
             ++A +A + G  D+++
Sbjct: 157 TYINAKDAVEQGFADEMM 174


>gi|256843130|ref|ZP_05548618.1| ATP-dependent Clp protease, proteolytic subunit [Lactobacillus
           crispatus 125-2-CHN]
 gi|256614550|gb|EEU19751.1| ATP-dependent Clp protease, proteolytic subunit [Lactobacillus
           crispatus 125-2-CHN]
          Length = 239

 Score =  111 bits (277), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 70/167 (41%), Gaps = 3/167 (1%)

Query: 48  TGQIEDHMATLICAQLLFLEAENPQKE-ISLYINSPGGVVTAGMAIYDTMQFIKPPISTF 106
               +      +  Q++    +  Q + + L I S GG V A   IY  +      ++  
Sbjct: 19  GQFFDYWGMQCVSPQMVKDSLDKAQGDEVELDIASYGGDVFAASEIYSMINQYSGKVTGV 78

Query: 107 CMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLN 166
             G AAS  +++  A +       P  ++++H+ S   +G + D    A  +    R + 
Sbjct: 79  IQGMAASAATIIAEACDHL--VISPAGQMMIHKASTAGAGNSDDFTHTAGVLNTTDRTIA 136

Query: 167 EIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
            IY    GK+ EEV   + ++  ++A +A + G  D+++     + +
Sbjct: 137 GIYQNRTGKSEEEVLNLMKQETYLTAKDAVEQGFADEIMKKSDKVPQ 183


>gi|298346364|ref|YP_003719051.1| ATP-dependent Clp protease proteolytic subunit ClpP [Mobiluncus
           curtisii ATCC 43063]
 gi|298236425|gb|ADI67557.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mobiluncus
           curtisii ATCC 43063]
          Length = 294

 Score =  111 bits (277), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 79/196 (40%), Gaps = 12/196 (6%)

Query: 22  VVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMA--TLICAQLLFLEAENPQKEISLYI 79
           +  +T   +   D+       R++ + G I +       +   +   E       +++++
Sbjct: 8   IPPETTNPDTQEDV-------RVLRINGAIAEESWLDDDVTPAIFASELNAGSGPVTVWL 60

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ 139
           NSPGG V A   IY+ +      +     G AAS  S  + A         P + +++H 
Sbjct: 61  NSPGGDVVAAARIYNMLLDYPGQVRVNIDGIAASAAS--VIAMAASNVAMSPVSMLMIHN 118

Query: 140 PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
           P+    G  +++ R    +  +K  +   Y    G +  ++ K +D +  M A+ A + G
Sbjct: 119 PATLAMGDKTELSRALDMLESVKDSIINAYQLKTGLSRAKLSKLMDAETWMDATAAIELG 178

Query: 200 VVDKVLM-SRIDIEEK 214
             D++L   R    +K
Sbjct: 179 FADELLTGKRAPTPDK 194


>gi|168211352|ref|ZP_02636977.1| serine protease [Clostridium perfringens B str. ATCC 3626]
 gi|170710641|gb|EDT22823.1| serine protease [Clostridium perfringens B str. ATCC 3626]
          Length = 255

 Score =  111 bits (277), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 44/187 (23%), Positives = 81/187 (43%), Gaps = 13/187 (6%)

Query: 23  VEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSP 82
           ++         DIY   L   I    G    H A     +   LE+      +++YINSP
Sbjct: 8   IKAKANNPSEADIY---LYIEIASWGGGYCAHSAQSFTEE---LESLGDISTLNVYINSP 61

Query: 83  GGVVTAGMAIYDTM--QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           GG V  G AI++ +  +     I+ +  G AAS+ S++  AG         NA +++H+ 
Sbjct: 62  GGDVFEGYAIFNVLRRKADNCQINVYIDGMAASIASVIAMAGTHI--SMPSNAVMMIHRA 119

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT---LDRDHIMSASEACD 197
           S G  G +  + +  + + KI   + + Y+       ++        + D  ++A E  +
Sbjct: 120 SIGIYGNSDVLAKGIKFLEKIDNNMKQTYINRSNGKLDDSTLDFLFSNGDTWLTAQECLE 179

Query: 198 WGVVDKV 204
           +G+ D+V
Sbjct: 180 YGLCDEV 186


>gi|290894026|ref|ZP_06557000.1| serine protease [Listeria monocytogenes FSL J2-071]
 gi|290556370|gb|EFD89910.1| serine protease [Listeria monocytogenes FSL J2-071]
          Length = 235

 Score =  111 bits (277), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 85/165 (51%), Gaps = 7/165 (4%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPI 103
           IV      ED  A+     L  L      + I+L++NSPGG V  G+AI + ++  K  +
Sbjct: 24  IVSFKWDEEDTTASSFQKDLKEL---GNIETINLHVNSPGGNVFEGIAISNMIKAHKAKV 80

Query: 104 STFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKR 163
             +    AAS+ S++++  +K + +   N+  ++H P+   SG ++++ +HA D+  I +
Sbjct: 81  IAYVDALAASIASVIVAGADKVVMY--ENSMQMIHNPTWNVSGNSTELRKHADDLDAIAQ 138

Query: 164 RLNEIYVKNCG--KTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
                Y+   G   + E++++ +  +  +SA +A   G+ D++L 
Sbjct: 139 ASVLTYLSKAGDKLSEEKIKQIMAEETWLSAKDALGHGLCDEILE 183


>gi|13095787|ref|NP_076678.1| protease [Lactococcus phage bIL286]
 gi|15673378|ref|NP_267552.1| ATP dependent Clp protease [Lactococcus lactis subsp. lactis
           Il1403]
 gi|30089895|ref|NP_839925.1| putative ClpP protease [Lactococcus phage P335 sensu lato]
 gi|12724383|gb|AAK05494.1|AE006371_8 prophage pi3 protein 23, ATP dependent Clp protease [Lactococcus
           lactis subsp. lactis Il1403]
 gi|12830976|gb|AAK08331.1|AF323669_44 protease [Lactococcus phage bIL286]
 gi|21954684|gb|AAM83073.1|AF489521_34 putative ClpP protease [Lactococcus phage 4268]
          Length = 235

 Score =  111 bits (277), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 2/135 (1%)

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
             +EI L I S GG V A   IY  ++    P++    G AAS  S++  AG+       
Sbjct: 41  DDEEIVLNIASNGGDVFAASEIYTAIKMNGKPVTVNIQGLAASAASVIAMAGDTVN--IS 98

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           P A++++H+   G  G A D E+ A+ +  + + +   Y    G    ++ + +  +  M
Sbjct: 99  PTAQLMIHKAMSGSQGNADDFEQEAKVLNGVDQSIAAAYELKTGMKQSDLLQLMSNETWM 158

Query: 191 SASEACDWGVVDKVL 205
           +A +A D G  D ++
Sbjct: 159 TAQDAVDKGFADNIM 173


>gi|256026839|ref|ZP_05440673.1| putative Clp protease [Fusobacterium sp. D11]
 gi|289764832|ref|ZP_06524210.1| hypothetical protein PSAG_00434 [Fusobacterium sp. D11]
 gi|289716387|gb|EFD80399.1| hypothetical protein PSAG_00434 [Fusobacterium sp. D11]
          Length = 370

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 76/173 (43%), Gaps = 8/173 (4%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI---- 99
           I     +    +++   A+   L+       I+L +NSPGG V    AIY+ ++      
Sbjct: 28  ITKWAWEEYGEVSSANFAK--ELQKLKNISHINLRVNSPGGDVFEASAIYNLLKDYAKVN 85

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
              I+ +  G AAS  S L+    K        A  ++H P     G A  +++  + + 
Sbjct: 86  NIEITGYIDGLAASAASFLVLCATKV--IMGTGALYMIHNPLTSAYGNAEKLKKQIELLD 143

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
            +K  + +IY      + EE+ + ++ +    ASEA + G VD+++ +   +E
Sbjct: 144 TVKEAILDIYCTKSKLSREEISEKMNGEKWYRASEALEAGFVDEIVENDNSLE 196


>gi|300933367|ref|ZP_07148623.1| peptidase S14 ClpP [Corynebacterium resistens DSM 45100]
          Length = 277

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 72/166 (43%), Gaps = 4/166 (2%)

Query: 43  RIVFVTGQIEDHMA--TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           R++ + G I +       I   L   E      +++++INSPGG V A   IY+ +    
Sbjct: 24  RVLRINGVIAEESWFDDDITPALFASELAAGSGDVTVWINSPGGDVVAAAQIYNMLIDYP 83

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
             +     G AAS  S++  AGE  +    P + +++H P+    G A ++ R    +  
Sbjct: 84  GHVRVCIDGIAASAASVIAMAGE--VVAMSPVSMLMIHNPATLAVGDADELGRAIDMLAA 141

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           +K  +   Y    G +  ++ + +D++  M A  A   G  D  L 
Sbjct: 142 VKESIINAYELKTGMSRAKLARLMDQETWMDARAAIAMGFADDYLT 187


>gi|297572087|ref|YP_003697861.1| peptidase S14 ClpP [Arcanobacterium haemolyticum DSM 20595]
 gi|296932434|gb|ADH93242.1| peptidase S14 ClpP [Arcanobacterium haemolyticum DSM 20595]
          Length = 277

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 72/166 (43%), Gaps = 4/166 (2%)

Query: 43  RIVFVTGQIEDHMA--TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           R++ + G I +       I   L   E      +++++INSPGG V A   IY+ +    
Sbjct: 24  RVLRINGVIAEESWFDDDITPALFASELAAGSGDVTVWINSPGGDVVAAAQIYNMLIDYP 83

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
             +     G AAS  S++  AGE  +    P + +++H P+    G A ++ R    +  
Sbjct: 84  GHVKVCIDGIAASAASVIAMAGE--VVAMSPVSMLMIHNPATLAVGDAEELGRVIDMLAA 141

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           +K  +   Y    G +  ++ + +D++  M A  A   G  D  L 
Sbjct: 142 VKESIINAYELKTGMSRAKLARLMDQETWMDARAAIAMGFADDYLT 187


>gi|83718056|ref|YP_439243.1| ClpP protease [Burkholderia thailandensis E264]
 gi|83651881|gb|ABC35945.1| ClpP protease [Burkholderia thailandensis E264]
          Length = 280

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 6/147 (4%)

Query: 55  MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASM 114
            A  I A L  + A    +++++ +NSPGG    G+AIY+ ++  K  ++   MG AAS 
Sbjct: 61  TAKRISAALRNIGA----RDVAVNVNSPGGDFFEGVAIYNLLREHKAKVTINVMGLAASA 116

Query: 115 GSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCG 174
            S++  AG++        A +++H       G   D+   A  +      + ++Y +  G
Sbjct: 117 ASVIAMAGDEI--LMGDGAFLMIHNAWAVAIGNRHDMTAAAATLAPFDAAMAKLYAQRAG 174

Query: 175 KTYEEVEKTLDRDHIMSASEACDWGVV 201
                    +DR+  + A +A D G  
Sbjct: 175 IPEATAAAMMDRETWIGADQAVDDGFA 201


>gi|315162197|gb|EFU06214.1| Clp protease [Enterococcus faecalis TX0645]
          Length = 257

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 70/147 (47%), Gaps = 3/147 (2%)

Query: 64  LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           L L   N  +++ + INS GG+V  G  IY  ++  +  +    +  A S  S++  AG 
Sbjct: 36  LDLLPANHNEDVEVTINSNGGLVDMGNEIYTALRSYEGHVKVSIV-MAGSAASIIAMAGN 94

Query: 124 KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
                  P  +I++H  + G  G    +++ ++ + K  + L   YV   GK  EE+   
Sbjct: 95  TV--AISPVGQIMIHNVAMGAGGDYHTMDKASEILQKANKSLANAYVSKTGKAKEEILAL 152

Query: 184 LDRDHIMSASEACDWGVVDKVLMSRID 210
           +D++  ++A EA + G  D+++    +
Sbjct: 153 MDKETWLTAEEAVENGFADEIMFENTE 179


>gi|228915237|ref|ZP_04078832.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228950451|ref|ZP_04112611.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228809266|gb|EEM55727.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228844468|gb|EEM89524.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 197

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 76/136 (55%), Gaps = 6/136 (4%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L   + +  +++Y+NS GG V AG+AIY+ ++  K   + +  G AAS+ S++  AG+  
Sbjct: 9   LGQLDDKSNLNIYVNSGGGSVFAGLAIYNMLKRNKAQKTVYVDGVAASIASVIALAGD-- 66

Query: 126 MRFALP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC--GKTYEEVEK 182
            R  +P NA +++H+P     G A D  + A+D+  I+  +  +Y +N   G   EE+++
Sbjct: 67  -RVVIPSNAFLMIHKPWTYAVGNAIDFRKAAEDLDNIESGIMNVYKENLKEGIEIEEIQQ 125

Query: 183 TLDRDHIMSASEACDW 198
            +D +  +S  EA  +
Sbjct: 126 LVDAETWLSGEEAEKY 141


>gi|228987127|ref|ZP_04147251.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|229156200|ref|ZP_04284297.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           ATCC 4342]
 gi|228627271|gb|EEK84001.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           ATCC 4342]
 gi|228772581|gb|EEM21023.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 197

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 77/136 (56%), Gaps = 6/136 (4%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L   + +  +++Y+NS GG V AG+AIY+ ++  K   + +  G AAS+ S++  AG+  
Sbjct: 9   LGQLDDKSNLNIYVNSGGGSVFAGLAIYNMLKRNKAQKTVYVDGVAASIASVIALAGD-- 66

Query: 126 MRFALP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC--GKTYEEVEK 182
            R  +P NA +++H+P    +G A D  + A+D+  I+  +  +Y +N   G   EE+++
Sbjct: 67  -RVVVPSNAFLMIHKPWTYAAGNAIDFRKAAEDLDNIESGIMNVYKENLKEGVEIEEIQQ 125

Query: 183 TLDRDHIMSASEACDW 198
            +D +  +S  EA  +
Sbjct: 126 LVDAETWLSGEEAEKY 141


>gi|9633042|ref|NP_050150.1| ClpP-like protease [Lactobacillus phage phiadh]
 gi|5730299|emb|CAB52520.1| ClpP-like protease [Lactobacillus phage phiadh]
          Length = 242

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 66/145 (45%), Gaps = 2/145 (1%)

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
            E    +++L INSPGG V AG  IY  ++  +  +     GQA S  S +  A ++   
Sbjct: 40  NEANGSDVTLEINSPGGYVDAGSEIYTALKEYQGQVIAKITGQACSAASWIALAADRIE- 98

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
              P A++++H+ S    G + D+      +  + +   ++Y +  G   +EV + +   
Sbjct: 99  -MSPTAQMMIHRASTISIGNSDDLASDLNALNSLDKSFVDLYSQRTGLDAQEVYRLMCNT 157

Query: 188 HIMSASEACDWGVVDKVLMSRIDIE 212
             M+A EA D G  D+++       
Sbjct: 158 TWMNAKEAVDKGFADEIMFQNDKKP 182


>gi|228926947|ref|ZP_04090013.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228832682|gb|EEM78253.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
          Length = 197

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 76/136 (55%), Gaps = 6/136 (4%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L   + +  +++Y+NS GG V AG+AIY+ ++  K   + +  G AAS+ S++  AG+  
Sbjct: 9   LGQLDDKSNLNIYVNSGGGSVFAGLAIYNMLKRNKAQKTVYVDGVAASIASVIALAGD-- 66

Query: 126 MRFALP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC--GKTYEEVEK 182
            R  +P NA +++H+P     G A D  + A+D+  I+  +  +Y +N   G   EE+++
Sbjct: 67  -RVVVPSNAFLMIHKPWTYAVGNAIDFRKAAEDLDNIESGIMNVYKENLKEGIEIEEIQQ 125

Query: 183 TLDRDHIMSASEACDW 198
            +D +  +S  EA  +
Sbjct: 126 LVDAETWLSGEEAEKY 141


>gi|71276662|ref|ZP_00652933.1| Peptidase S14, ClpP [Xylella fastidiosa Dixon]
 gi|71899159|ref|ZP_00681322.1| Peptidase S14, ClpP [Xylella fastidiosa Ann-1]
 gi|71162534|gb|EAO12265.1| Peptidase S14, ClpP [Xylella fastidiosa Dixon]
 gi|71731017|gb|EAO33085.1| Peptidase S14, ClpP [Xylella fastidiosa Ann-1]
          Length = 771

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/175 (28%), Positives = 79/175 (45%), Gaps = 17/175 (9%)

Query: 41  KERIVFVTGQIEDH------MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           K+  + + G I D        A  I AQL    +      I + INS GGVV+ G+AIY+
Sbjct: 41  KQAELLLYGPIGDDFWEEGVTAASIIAQL----STVTAPLIHVRINSNGGVVSDGLAIYN 96

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            +      I     G AAS+ SL+  AG    R   PN+ +++H P  G  G A D+   
Sbjct: 97  ALTAHPATIHVTIDGVAASIASLIAQAGTT--RRVYPNSLMMIHGPQTGGWGFAEDLRHT 154

Query: 155 AQDIVKIKRRLNEIYVKNCGKT-YEEVEKTLD--RDHIMSASEACDWGVVDKVLM 206
           A  +  +   ++  Y    G T  E + + L+   DH ++A +    G+ D ++ 
Sbjct: 155 AAMLDTMAAAMHTAY--TTGATHPEAIRRMLNDGHDHWLTAQDMIAAGLADTIID 207


>gi|239625900|ref|ZP_04668931.1| ATP-dependent endopeptidase clp proteolytic subunit clpP
           [Clostridiales bacterium 1_7_47_FAA]
 gi|239520130|gb|EEQ59996.1| ATP-dependent endopeptidase clp proteolytic subunit clpP
           [Clostridiales bacterium 1_7_47FAA]
          Length = 257

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 69/133 (51%), Gaps = 3/133 (2%)

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AE   +++++YINS GG V AG+AIY+ ++  +     F    A S+ S L    +    
Sbjct: 63  AEANGRDLNIYINSGGGSVFAGIAIYNMLKRYQGKKHCFVDALAGSIAS-LFPFVDSDKP 121

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC--GKTYEEVEKTLD 185
               NA +++H+P     G A+++ + A  +  I+  +  IY ++   G T E++++ ++
Sbjct: 122 TIPKNAYLMIHKPWCDCEGNANELRKMADTLEAIEAGIWSIYEEHLAEGVTIEQIKELME 181

Query: 186 RDHIMSASEACDW 198
            +  +S  EA  +
Sbjct: 182 AETWLSGEEAAKY 194


>gi|121605153|ref|YP_982482.1| peptidase S14, ClpP [Polaromonas naphthalenivorans CJ2]
 gi|120594122|gb|ABM37561.1| ATP-dependent Clp protease proteolytic subunit ClpP [Polaromonas
           naphthalenivorans CJ2]
          Length = 674

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 71/163 (43%), Gaps = 5/163 (3%)

Query: 45  VFVTGQIEDHM-ATLICAQLLFLEAENPQKE-ISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           +++ G I +      + A     E  +     I++ INS GG V  G+AIY+ ++  K  
Sbjct: 30  IYIYGDIGESWYEETVSAATFVKELNDIDATAITVRINSIGGSVPDGLAIYNALRRHKAE 89

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIK 162
           ++    G A S+ SL+  AG+K       NA +++H P    SG + ++   A  +    
Sbjct: 90  VTIEIDGMALSVASLIAMAGDKVN--MANNAMLMIHGPWSYVSGNSVELRDMADQLDTWA 147

Query: 163 RRLNEIYVKNCGKTYEEVEKTLD-RDHIMSASEACDWGVVDKV 204
             ++  Y    G     +    D +DH  +A +A     VD +
Sbjct: 148 AAMSNSYAARTGDQPAMLALLTDGKDHFYTAEQALAEKFVDAI 190


>gi|225466368|ref|XP_002276419.1| PREDICTED: similar to ATP-dependent Clp protease proteolytic
           subunit, putative, partial [Vitis vinifera]
          Length = 129

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/117 (37%), Positives = 74/117 (63%)

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
           ++K PI T C+G A    +LLL+AG KG R ALP++ I++ QP   F GQA+DI+   ++
Sbjct: 1   YVKSPIFTLCVGNAWGEAALLLAAGAKGNRSALPSSTIMIKQPIARFQGQATDIDLARKE 60

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           +  +K  L ++Y K+ GK+ +++E  + R    S SEA ++G++DKV  +    E++
Sbjct: 61  VKNVKAELVKLYAKHIGKSPDQIEADIRRPKYFSPSEAVEYGIIDKVQYNERSSEDR 117


>gi|261883798|ref|ZP_06007837.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
          fetus subsp. venerealis str. Azul-94]
          Length = 85

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 55/81 (67%), Positives = 71/81 (87%)

Query: 19 VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
          +P VVE+T++GERSYDIYSRLLK+RI+ ++G+IED MA+ I AQ+LFLEAE+P K+I LY
Sbjct: 5  IPYVVERTSKGERSYDIYSRLLKDRIIMLSGEIEDAMASAIVAQMLFLEAEDPDKDIYLY 64

Query: 79 INSPGGVVTAGMAIYDTMQFI 99
          INS GGVVT+G +IYDTM +I
Sbjct: 65 INSTGGVVTSGFSIYDTMNYI 85


>gi|160938986|ref|ZP_02086337.1| hypothetical protein CLOBOL_03880 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437949|gb|EDP15709.1| hypothetical protein CLOBOL_03880 [Clostridium bolteae ATCC
           BAA-613]
          Length = 259

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 69/133 (51%), Gaps = 3/133 (2%)

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AE   +++++YINS GG V AG+AIY+ ++  +     F    A S+ S L    +    
Sbjct: 65  AEANGRDLNIYINSGGGSVFAGIAIYNMLKRYQGKKHCFVDALAGSIAS-LFPFVDSDKP 123

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC--GKTYEEVEKTLD 185
               NA +++H+P     G A+++ + A  +  I+  +  IY ++   G T E++++ ++
Sbjct: 124 TIPKNAYLMIHKPWCDCEGNANELRKMADTLEAIEAGIWSIYEEHLAEGVTIEQIKELME 183

Query: 186 RDHIMSASEACDW 198
            +  +S  EA  +
Sbjct: 184 AETWLSGEEAAKY 196


>gi|291525012|emb|CBK90599.1| Protease subunit of ATP-dependent Clp proteases [Eubacterium
           rectale DSM 17629]
          Length = 259

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 69/133 (51%), Gaps = 3/133 (2%)

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AE   +++++YINS GG V AG+AIY+ ++  +     F    A S+ S L    +    
Sbjct: 65  AEANGRDLNIYINSGGGSVFAGIAIYNMLKRYQGKKHCFVDALAGSIAS-LFPFVDSDKP 123

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC--GKTYEEVEKTLD 185
               NA +++H+P     G A+++ + A  +  I+  +  IY ++   G T E++++ ++
Sbjct: 124 TIPKNAYLMIHKPWCDCEGNANELRKMADTLEAIEAGIWSIYEEHLAEGVTIEQIKELME 183

Query: 186 RDHIMSASEACDW 198
            +  +S  EA  +
Sbjct: 184 AETWLSGEEAAKY 196


>gi|257142364|ref|ZP_05590626.1| ClpP protease [Burkholderia thailandensis E264]
          Length = 243

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 6/147 (4%)

Query: 55  MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASM 114
            A  I A L  + A    +++++ +NSPGG    G+AIY+ ++  K  ++   MG AAS 
Sbjct: 24  TAKRISAALRNIGA----RDVAVNVNSPGGDFFEGVAIYNLLREHKAKVTINVMGLAASA 79

Query: 115 GSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCG 174
            S++  AG++        A +++H       G   D+   A  +      + ++Y +  G
Sbjct: 80  ASVIAMAGDEI--LMGDGAFLMIHNAWAVAIGNRHDMTAAAATLAPFDAAMAKLYAQRAG 137

Query: 175 KTYEEVEKTLDRDHIMSASEACDWGVV 201
                    +DR+  + A +A D G  
Sbjct: 138 IPEATAAAMMDRETWIGADQAVDDGFA 164


>gi|315573877|gb|EFU86068.1| Clp protease [Enterococcus faecalis TX0309B]
 gi|315580361|gb|EFU92552.1| Clp protease [Enterococcus faecalis TX0309A]
          Length = 254

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 68/140 (48%), Gaps = 3/140 (2%)

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
             +++ + INS GG+V  G  IY  ++  +  +    +  A S  S++  AG+       
Sbjct: 40  NNEDVEVTINSNGGLVDMGNEIYTALRSYEGHVKVNIV-MAGSAASIIAMAGKTV--AIS 96

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           P  +I++H  + G  G    +++ ++ + K  + L   YV   GK  EE+   +D++  +
Sbjct: 97  PVGQIMIHNVAMGAGGDYHTMDKASEILQKANKSLANAYVSKTGKAKEEILALMDKETWL 156

Query: 191 SASEACDWGVVDKVLMSRID 210
           +A EA + G  D+++    +
Sbjct: 157 TAEEAVENGFADEIMFENTE 176


>gi|227878727|ref|ZP_03996639.1| S14 family endopeptidase ClpP [Lactobacillus crispatus JV-V01]
 gi|227861696|gb|EEJ69303.1| S14 family endopeptidase ClpP [Lactobacillus crispatus JV-V01]
          Length = 230

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 40/133 (30%), Positives = 70/133 (52%), Gaps = 2/133 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           ++I + INS GG V AG  IY  ++  +  I    +G A S  S +  AG+       P 
Sbjct: 44  QDIVVEINSRGGYVDAGSEIYTELKKYQGNIDIQIVGYACSAASWIALAGDTVE--MSPT 101

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A++++H+ SGG  G   D+    Q + ++ + L ++Y K  GK+ +EV + + ++  M+A
Sbjct: 102 AQLMIHRASGGADGNVDDLASAMQGLDQMDQALVDLYAKRTGKSAQEVYQLMAKESWMNA 161

Query: 193 SEACDWGVVDKVL 205
             A   G VD ++
Sbjct: 162 KTAVANGFVDSIM 174


>gi|221504262|gb|EEE29937.1| ATP-dependent Clp protease proteolytic subunit, putative
           [Toxoplasma gondii VEG]
          Length = 310

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 28/161 (17%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
            + L INSPGG VTA +++ D    +   + T  +GQA  + +LLL+AG  G R A P+ 
Sbjct: 143 PVDLLINSPGGSVTAALSLLDLRHSLPFEVHTTSIGQAGGVAALLLAAGTPGHRRAFPSC 202

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC-------------------- 173
           R  L Q  G   GQA  IER   +I  ++R +       C                    
Sbjct: 203 RFSLRQIEGRVEGQAETIERETAEIESVQRLVYRHLAAFCTRRGPGDRGSERESHSERGE 262

Query: 174 -GKTYE-------EVEKTLDRDHIMSASEACDWGVVDKVLM 206
            G+  E       E+++  + +  +SA +  ++G++D+V+ 
Sbjct: 263 AGEDRERLAKREKEIQEDCENELFLSAEQGVEYGLIDQVIQ 303


>gi|237840947|ref|XP_002369771.1| ATP-dependent Clp protease proteolytic subunit, putative
           [Toxoplasma gondii ME49]
 gi|211967435|gb|EEB02631.1| ATP-dependent Clp protease proteolytic subunit, putative
           [Toxoplasma gondii ME49]
 gi|221483722|gb|EEE22034.1| ATP-dependent Clp protease proteolytic subunit, putative
           [Toxoplasma gondii GT1]
          Length = 310

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 28/161 (17%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
            + L INSPGG VTA +++ D    +   + T  +GQA  + +LLL+AG  G R A P+ 
Sbjct: 143 PVDLLINSPGGSVTAALSLLDLRHSLPFEVHTTSIGQAGGVAALLLAAGTPGHRRAFPSC 202

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC-------------------- 173
           R  L Q  G   GQA  IER   +I  ++R +       C                    
Sbjct: 203 RFSLRQIEGRVEGQAETIERETAEIESVQRLVYRHLAAFCTRRGPGDRGSERESHSERGE 262

Query: 174 -GKTYE-------EVEKTLDRDHIMSASEACDWGVVDKVLM 206
            G+  E       E+++  + +  +SA +  ++G++D+V+ 
Sbjct: 263 AGEDRERLAKREKEIQEDCENELFLSAEQGVEYGLIDQVIQ 303


>gi|300933461|ref|ZP_07148717.1| peptidase S14 ClpP [Corynebacterium resistens DSM 45100]
          Length = 275

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 72/166 (43%), Gaps = 4/166 (2%)

Query: 43  RIVFVTGQIEDHMA--TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           R++ + G I +       I   L   E      +++++INSPGG V A   IY+ +    
Sbjct: 24  RVLRINGVIAEESWFDDDITPALFASELAAGSGDVTVWINSPGGDVVAAAQIYNMLIDYP 83

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
             +     G AAS  S++  AGE  +    P + +++H P+    G A ++ R    +  
Sbjct: 84  GHVRVHIDGIAASAASVIAMAGE--VVAMSPVSMLMIHNPATLAVGDADELGRAIDMLAA 141

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           +K  +   Y    G +  ++ + +D++  M A  A   G  D  L 
Sbjct: 142 VKESIINAYELKTGMSRAKLARLMDQETWMDARAAISMGFADDYLT 187


>gi|71898021|ref|ZP_00680226.1| Peptidase S14, ClpP [Xylella fastidiosa Ann-1]
 gi|71732265|gb|EAO34320.1| Peptidase S14, ClpP [Xylella fastidiosa Ann-1]
          Length = 771

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 78/175 (44%), Gaps = 17/175 (9%)

Query: 41  KERIVFVTGQIEDH------MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           K+  + + G I D        A  + AQL    +      I + INS GGVV+ G+AIY+
Sbjct: 41  KQAELLLYGPIGDDFWEEGVTAASLIAQL----STVTAPLIHVRINSNGGVVSDGLAIYN 96

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            +      I     G AAS+ SL+  AG    R   PN+ +++H P     G A D+   
Sbjct: 97  ALTAHPATIHVTIDGVAASIASLIAQAGTT--RRVYPNSLMMIHGPQTSGWGFAEDLRHT 154

Query: 155 AQDIVKIKRRLNEIYVKNCGKT-YEEVEKTLD--RDHIMSASEACDWGVVDKVLM 206
           A  +  +   ++  Y    G T  E + + L+   DH ++A +    G+ D ++ 
Sbjct: 155 AAMLDTMAAAMHTAY--TTGATHPEAIRRMLNDGHDHWLTAQDMIAAGLADTIID 207


>gi|19745487|ref|NP_606623.1| hypothetical protein spyM18_0371 [Streptococcus pyogenes MGAS8232]
 gi|21910248|ref|NP_664516.1| hypothetical protein SpyM3_0712 [Streptococcus pyogenes MGAS315]
 gi|28876177|ref|NP_795404.1| head maturation protease [Streptococcus pyogenes phage 315.1]
 gi|28896052|ref|NP_802402.1| scaffolding protein [Streptococcus pyogenes SSI-1]
 gi|19747603|gb|AAL97122.1| hypothetical phage protein [Streptococcus pyogenes MGAS8232]
 gi|21904443|gb|AAM79319.1| conserved hypothetical protein - phage-associated [Streptococcus
           pyogenes phage 315.1]
 gi|28811302|dbj|BAC64235.1| putative scaffolding protein [Streptococcus pyogenes SSI-1]
          Length = 268

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 69/137 (50%), Gaps = 2/137 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           ++I + +NS GG V  G  IY  ++     +     G AAS+ S+++ AG+     A P 
Sbjct: 42  EDIQVRLNSGGGEVFVGSEIYSALKDYPGNVEVVITGLAASIASIIMLAGDVIK--ASPM 99

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A+I++H  S G  G    ++  ++ +      L  +Y +  GK   E+ + LD +   +A
Sbjct: 100 AQIMIHNASWGSYGDYRQLKHDSEVVENASISLAGMYAQKTGKQETEIRELLDAETWFTA 159

Query: 193 SEACDWGVVDKVLMSRI 209
           + A + G++D +L + +
Sbjct: 160 NSAKEIGLIDDILYNEM 176


>gi|256849988|ref|ZP_05555419.1| Clp protease [Lactobacillus crispatus MV-1A-US]
 gi|262046764|ref|ZP_06019724.1| Clp protease [Lactobacillus crispatus MV-3A-US]
 gi|256713477|gb|EEU28467.1| Clp protease [Lactobacillus crispatus MV-1A-US]
 gi|260572746|gb|EEX29306.1| Clp protease [Lactobacillus crispatus MV-3A-US]
          Length = 231

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 40/133 (30%), Positives = 70/133 (52%), Gaps = 2/133 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           ++I + INS GG V AG  IY  ++  +  I    +G A S  S +  AG+       P 
Sbjct: 45  QDIVVEINSRGGYVDAGSEIYTELKKYQGNIDIQIVGYACSAASWIALAGDTVE--MSPT 102

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A++++H+ SGG  G   D+    Q + ++ + L ++Y K  GK+ +EV + + ++  M+A
Sbjct: 103 AQLMIHRASGGADGNVDDLASAMQGLDQMDQALVDLYAKRTGKSAQEVYQLMAKESWMNA 162

Query: 193 SEACDWGVVDKVL 205
             A   G VD ++
Sbjct: 163 KTAVANGFVDSIM 175


>gi|126011097|ref|YP_001039922.1| head maturation protease [Streptococcus phage phi3396]
 gi|124389366|gb|ABN10808.1| head maturation protease [Streptococcus phage phi3396]
          Length = 268

 Score =  108 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 69/137 (50%), Gaps = 2/137 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           ++I + +NS GG V  G  IY  ++     +     G AAS+ S+++ AG+     A P 
Sbjct: 42  EDIQVRLNSGGGEVFVGSEIYSALKDYPGNVEVVITGLAASIASIIMLAGDVIK--ASPM 99

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A+I++H  S G  G    ++  ++ +      L  +Y +  GK   E+ + LD +   +A
Sbjct: 100 AQIMIHNASWGSYGDYRQLKHDSEVVENASISLAGMYARKTGKQETEIRELLDAETWFTA 159

Query: 193 SEACDWGVVDKVLMSRI 209
           + A + G++D +L + +
Sbjct: 160 NSAKEIGLIDDILYNEM 176


>gi|218901725|ref|YP_002449559.1| Clp protease [Bacillus cereus AH820]
 gi|218538595|gb|ACK90993.1| Clp protease [Bacillus cereus AH820]
          Length = 247

 Score =  108 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 70/166 (42%), Gaps = 6/166 (3%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           L     +      +   ++ +  QL  + A    K I+++INS GG V   +AI + ++ 
Sbjct: 26  LYMYGSISAYSWYDGISSSKVREQLKNVTA----KTINVHINSGGGDVFESIAISNLLKN 81

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
               I     G AAS  S++  A +K       N  +++H+     +G A  + + A  +
Sbjct: 82  HSATIVVHIDGLAASGASVIAMAADKI--VMPKNTMMMIHKAWTYAAGNAEGLRKVADRL 139

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            KI   + E Y         E+E  L  +  ++A E   +G  D++
Sbjct: 140 DKIDNAVTESYTSRFVGEKSELESLLAEETWLTAEECKTFGFCDEI 185


>gi|116492765|ref|YP_804500.1| protease subunit of ATP-dependent Clp protease [Pediococcus
           pentosaceus ATCC 25745]
 gi|116102915|gb|ABJ68058.1| Protease subunit of ATP-dependent Clp protease [Pediococcus
           pentosaceus ATCC 25745]
          Length = 251

 Score =  108 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 2/127 (1%)

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           I S GG V A   IY  ++     ++    G AAS  S++  AG+       P A+I++H
Sbjct: 57  IASNGGDVFAASEIYTMLKNYAGNVTVNIQGLAASAASVIAMAGDHIN--ISPTAQIMIH 114

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           +     +G A D+E  A  +  I + +   Y    G    ++ + +  +  ++AS+A D 
Sbjct: 115 KAWSQPAGNADDLEHEASVLNGIDQSIASAYEAKTGMDQADLLQLMANETWLTASDAVDK 174

Query: 199 GVVDKVL 205
           G  D+++
Sbjct: 175 GFADEIM 181


>gi|257470301|ref|ZP_05634392.1| peptidase S14, ClpP [Fusobacterium ulcerans ATCC 49185]
 gi|317064512|ref|ZP_07928997.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           ulcerans ATCC 49185]
 gi|313690188|gb|EFS27023.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           ulcerans ATCC 49185]
          Length = 367

 Score =  108 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 74/164 (45%), Gaps = 7/164 (4%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF--IKP 101
           I     +     ++LI   +  LE     +++S+ INSPGG ++  +AIY  ++      
Sbjct: 25  ITRWAWEEFGQTSSLI--FIKQLEKIKNARKVSIKINSPGGDISETLAIYHELKRLSQTK 82

Query: 102 PISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS-GQASDIERHAQDIVK 160
            I+ +  G A S  +L+  A +K           ++H P          +++   + + K
Sbjct: 83  EITAYIDGMACSAATLIAIAAKKT--VMGKGCYFMIHNPMIYMGYSNTGEMQEAIEHLNK 140

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            K  + ++Y +    + E++ K +D +   +A EA + G +D++
Sbjct: 141 TKENMIDLYEEKSSLSREDIAKKMDEETYFTAQEALEAGFIDEI 184


>gi|257467083|ref|ZP_05631394.1| prophage LambdaBa02, Clp protease family protein [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315918215|ref|ZP_07914455.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313692090|gb|EFS28925.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 371

 Score =  108 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 73/173 (42%), Gaps = 9/173 (5%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI---- 99
           I     +    +++   A+   L+      +I+L +NS GG V    AI++ ++      
Sbjct: 26  ITKWAWEEVGEVSSHSFAK--ELKNLKNISKINLRVNSGGGDVFEANAIFNLLKSYAKEN 83

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
              I  +  G AAS  S L+    K           ++H P     G   ++ +    + 
Sbjct: 84  NVEIIGYIDGLAASAASFLVLCAHKV--IMGVGCLFMIHNPWTYTKGNVKELGQTIDFLN 141

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
           KIK  + +IY      T +E+ + +D +   SASEA + G VD+ +    D+E
Sbjct: 142 KIKESILDIYETKTKLTRQEISQKMDEEKWFSASEALESGFVDE-MSEMEDVE 193


>gi|254503874|ref|ZP_05116025.1| Clp protease domain protein [Labrenzia alexandrii DFL-11]
 gi|222439945|gb|EEE46624.1| Clp protease domain protein [Labrenzia alexandrii DFL-11]
          Length = 342

 Score =  108 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 2/138 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L     Q ++++ +NS GG V  G +IY+ ++     ++ F  G AAS  SL+  AG+K 
Sbjct: 33  LAEHGSQNDLTVRLNSGGGYVDDGRSIYNALKVHGGDVTVFVDGVAASSASLIAMAGDKI 92

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
           +  +   A +++H P+    G A D +   Q + +      + Y    G   ++V   + 
Sbjct: 93  VMRS--GALMMIHDPATITVGTADDHDVSKQALERTAESFADTYAARSGNDAKDVRAAMK 150

Query: 186 RDHIMSASEACDWGVVDK 203
               M+A EA   G  D+
Sbjct: 151 ATTWMTADEAVAAGYADE 168


>gi|294839797|ref|ZP_06784480.1| ClpP protease [Acinetobacter sp. 6013113]
 gi|294860199|ref|ZP_06797968.1| ClpP protease [Acinetobacter sp. 6013150]
          Length = 279

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 64/134 (47%), Gaps = 2/134 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           ++ + INSPGG V  G+ IY+ ++  +  ++   +G AAS  S +  A ++         
Sbjct: 74  DVVVNINSPGGDVFEGLTIYNLLREYEGHVTVRVLGLAASAASFIAMAADEIQ--IARAG 131

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
             ++H    G  G  +D+   A  + +I   + +IY    G + +E++  +D++  ++  
Sbjct: 132 FFMIHNAWTGVWGNRNDMRETADFLEQIDETIADIYSIRTGLSIDELKAQMDKESWINGK 191

Query: 194 EACDWGVVDKVLMS 207
            + + G  D  L S
Sbjct: 192 NSVEQGFADSYLDS 205


>gi|255647150|gb|ACU24043.1| unknown [Glycine max]
          Length = 230

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 48/96 (50%), Positives = 66/96 (68%), Gaps = 6/96 (6%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           G  PMV E      R   + S+L + RI+   G ++D MA +I AQLL+L+A +P K+I 
Sbjct: 99  GPPPMVAE------RFQSVISQLFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPNKDIV 152

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAA 112
           +Y+NSPGG VTAGMAI+DTM+ I+P +ST C+G AA
Sbjct: 153 MYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAA 188


>gi|229828941|ref|ZP_04455010.1| hypothetical protein GCWU000342_01026 [Shuttleworthia satelles DSM
           14600]
 gi|229792104|gb|EEP28218.1| hypothetical protein GCWU000342_01026 [Shuttleworthia satelles DSM
           14600]
          Length = 224

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 74/155 (47%), Gaps = 4/155 (2%)

Query: 50  QIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMG 109
           +      T   A L  LE  + +K + + INS GG V A   IY  +Q  K  +    +G
Sbjct: 29  EYFGEKCTSPSAVLRQLEEASGEK-VDIDINSAGGNVFAASEIYAAIQGYKGDVKIHVVG 87

Query: 110 QAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIY 169
            AAS  S++  AG          A++++H  S   +G   D+   ++ + +  R + E Y
Sbjct: 88  LAASAASMIACAG---KSDITRTAQMMVHNVSAYTAGDYRDMNHASEVLKQANRAIAEAY 144

Query: 170 VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           V   G + ++    +D +  ++A +A D+G++D++
Sbjct: 145 VAKSGMSEKDALDLMDAETWITAQDAVDYGLIDEI 179


>gi|270291371|ref|ZP_06197593.1| ATP-dependent Clp protease, protease subunit [Pediococcus
           acidilactici 7_4]
 gi|270280217|gb|EFA26053.1| ATP-dependent Clp protease, protease subunit [Pediococcus
           acidilactici 7_4]
          Length = 243

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 2/127 (1%)

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           I S GG V A   IY  ++     ++    G AAS  S++  AG+       P A+I++H
Sbjct: 49  IASNGGDVFAASEIYTMLKNYAGNVTVNIQGLAASAASVIAMAGDHIN--ISPTAQIMIH 106

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           +     +G A D+E  A  +  I + +   Y    G    ++ + +  +  ++AS+A D 
Sbjct: 107 KAWSQPAGNADDLEHEASILNGIDQSIASAYEAKTGMDQADLLQLMANETWLTASDAVDK 166

Query: 199 GVVDKVL 205
           G  D+++
Sbjct: 167 GFADEIM 173


>gi|153931022|ref|YP_001385267.1| putative Clp protease [Clostridium botulinum A str. ATCC 19397]
 gi|152927066|gb|ABS32566.1| putative Clp protease [Clostridium botulinum A str. ATCC 19397]
          Length = 247

 Score =  108 bits (270), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 68/159 (42%), Gaps = 2/159 (1%)

Query: 48  TGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFC 107
               +D    +   ++    A+   K+++++INS GG V   +AI + ++     I+   
Sbjct: 35  GYWWDDEDDCISAKRVKNALADLRDKDVNIHINSGGGDVFESIAICNLLKQHGGNITITI 94

Query: 108 MGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNE 167
              AAS  S++  A  K       N+ +++H+      G A D+ + A D+ K+   +  
Sbjct: 95  DALAASGASVICMAANKI--VMPKNSMMMIHKAWTWTDGNADDLRKVAADLDKMDSAVLA 152

Query: 168 IYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
            Y      T EE++  +      +A E    G  D++L 
Sbjct: 153 SYKDRFIGTEEELKALIKESSWFTAEECKSLGFCDEILD 191


>gi|153941045|ref|YP_001392481.1| putative Clp protease [Clostridium botulinum F str. Langeland]
 gi|152936941|gb|ABS42439.1| putative Clp protease [Clostridium botulinum F str. Langeland]
 gi|295320466|gb|ADG00844.1| putative Clp protease [Clostridium botulinum F str. 230613]
          Length = 266

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 47/202 (23%), Positives = 93/202 (46%), Gaps = 15/202 (7%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           + F+   K+  ++  +G +    E  N+ E   ++Y     +     +           C
Sbjct: 5   LQFKNKNKQTGKEEVVGTM----EIKNQTEEKAELY--FYGD---ICSSTWGCWEEEDKC 55

Query: 61  AQLL--FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLL 118
            Q +  FL+  +  KE+ +YINS GG V AG+AIY  ++      +    G AAS+ S++
Sbjct: 56  PQDVSNFLKEIDNNKELDIYINSGGGSVFAGLAIYHQLKRHNGFKTVHVDGLAASITSVI 115

Query: 119 LSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC--GKT 176
              G+K +  A   A+ ++H+P     G A++  + A D+   +  + +IY  N   G  
Sbjct: 116 ALVGDKVVIPAP--AQFMIHKPWTIALGNANEFRKQANDLDIAEESILKIYEANLNEGVN 173

Query: 177 YEEVEKTLDRDHIMSASEACDW 198
            E +++ +  +  M+  +A ++
Sbjct: 174 IETIKQLMADETWMTGEKAAEY 195


>gi|229017470|ref|ZP_04174371.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           AH1273]
 gi|229023686|ref|ZP_04180178.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           AH1272]
 gi|228737611|gb|EEL88115.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           AH1272]
 gi|228743794|gb|EEL93895.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           AH1273]
          Length = 197

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 76/136 (55%), Gaps = 6/136 (4%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L   + +  +++Y+NS GG V AG+AIY+ ++  K   + +  G AAS+ S++  AG+  
Sbjct: 9   LGQLDDKSNLNIYVNSGGGSVFAGLAIYNMLKRNKAQKTVYVDGVAASIASVIALAGD-- 66

Query: 126 MRFALP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC--GKTYEEVEK 182
            R  +P NA +++H+P     G + D  + A+D+  I+  +  +Y +N   G   EE+++
Sbjct: 67  -RVVVPSNAFLMIHKPWTYADGNSIDFRKAAEDLDNIESGIMNVYKENLKEGIEIEEIQQ 125

Query: 183 TLDRDHIMSASEACDW 198
            +D +  +S  EA  +
Sbjct: 126 LVDAETWLSGEEAEKY 141


>gi|220931198|ref|YP_002508106.1| peptidase S14 ClpP [Halothermothrix orenii H 168]
 gi|219992508|gb|ACL69111.1| peptidase S14 ClpP [Halothermothrix orenii H 168]
          Length = 234

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 74/147 (50%), Gaps = 7/147 (4%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I +++NS GG +   +AI++  +  K  I     G AAS GS++L AG+K   +  PN+
Sbjct: 55  KIIVHLNSTGGDLFQSVAIHNLFKDHKAEIIMINDGIAASGGSIILMAGDKIKFY--PNS 112

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H       G A      A+ + KI + L E Y +      +E+EK +  +  ++A 
Sbjct: 113 IMMIHAAHTITYGDAKYHREVARKLDKIDKSLKENYSQRFTGAEKELEKLIQEETWLTAK 172

Query: 194 EACDWGVVDKVL-----MSRIDIEEKS 215
           EA + G  D+++      SR + +  +
Sbjct: 173 EAKEKGFCDEIISDNTEESRAENKSNN 199


>gi|77864703|ref|YP_355413.1| gp77 [Burkholderia phage Bcep176]
 gi|161520414|ref|YP_001583841.1| peptidase S14 ClpP [Burkholderia multivorans ATCC 17616]
 gi|189353395|ref|YP_001949022.1| bacteriophage ATP-dependent Clp protease [Burkholderia multivorans
           ATCC 17616]
 gi|76885889|gb|ABA60079.1| gp77 [Burkholderia phage Bcep176]
 gi|160344464|gb|ABX17549.1| peptidase S14 ClpP [Burkholderia multivorans ATCC 17616]
 gi|189337417|dbj|BAG46486.1| bacteriophage ATP-dependent Clp protease [Burkholderia multivorans
           ATCC 17616]
          Length = 280

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 67/147 (45%), Gaps = 6/147 (4%)

Query: 55  MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASM 114
            A  I A L  + A    +E+++ +NSPGG    G+AIY+ ++  K  ++   MG AAS 
Sbjct: 61  TAKRISAALRNIGA----REVTVNVNSPGGDFFEGVAIYNLLREHKAKVTVNVMGLAASA 116

Query: 115 GSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCG 174
            S++  AG++        A +++H       G   D+   A  +      + ++Y +  G
Sbjct: 117 ASVIAMAGDEI--LMGDGAFLMIHNAWAVAIGNRHDMAAAAATLAPFDAAMAKLYAQRAG 174

Query: 175 KTYEEVEKTLDRDHIMSASEACDWGVV 201
            + E     +D++  + A +A   G  
Sbjct: 175 ISEETAAAMMDKETWIGADQAVKDGFA 201


>gi|296110489|ref|YP_003620870.1| ATP-dependent Clp protease proteolytic subunit [Leuconostoc kimchii
           IMSNU 11154]
 gi|295832020|gb|ADG39901.1| ATP-dependent Clp protease proteolytic subunit [Leuconostoc kimchii
           IMSNU 11154]
          Length = 229

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 64/134 (47%), Gaps = 2/134 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
            ++ + INS GG V A   IY  ++  +  +       A S  S++  AG+       P 
Sbjct: 41  SDLEIAINSGGGEVDAANEIYTGLRNYQGRVIIQVESSAYSAASIIAMAGDTVQ--ISPV 98

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A++++H  S    G  +D+++ +  +    + + + Y    G+  +E    +D++  ++A
Sbjct: 99  AQLMIHNASTYAGGNHNDLDKTSNALKSTDKAIAKAYAVKTGRPVDEFLAMMDKETWINA 158

Query: 193 SEACDWGVVDKVLM 206
            +A + G+ D+++ 
Sbjct: 159 DDAIELGLADEIMT 172


>gi|237747841|ref|ZP_04578321.1| ClpP protease [Oxalobacter formigenes OXCC13]
 gi|229379203|gb|EEO29294.1| ClpP protease [Oxalobacter formigenes OXCC13]
          Length = 277

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 59/129 (45%), Gaps = 2/129 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
            +I + INSPGG    G+AIY+ ++  K  ++   +  AAS  S++  AG++        
Sbjct: 74  SDIVVDINSPGGNFFEGVAIYNQLREHKGKVTCRVLSLAASAASVIAMAGDEI--LMGEG 131

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A +++H       G   D+   +  +      +  +Y    G   + V + +D++  +SA
Sbjct: 132 AFLMIHNAWAVAVGNRHDLAEASALMTPFDDAMASLYASRSGLDKKFVSEMMDKETWLSA 191

Query: 193 SEACDWGVV 201
            +A + G  
Sbjct: 192 DQAIEDGFA 200


>gi|291514745|emb|CBK63955.1| Protease subunit of ATP-dependent Clp proteases [Alistipes shahii
           WAL 8301]
          Length = 290

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 4/143 (2%)

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AE    E+ + I S GG V   + I+D ++ +   ++T C G  AS  +++  A  +G R
Sbjct: 51  AEIEAPEVVVNIRSTGGDVNDALLIHDALRQLPARVTTRCYGYTASAATIIAQAASEGCR 110

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
               NA  L+H       G A++I      + +   R+  +Y    G+   E E  +  +
Sbjct: 111 LLSANALYLIHTAICSTEGNAAEIAGKIDLLHQTDARIAAVYASRSGRPAAEFEALMAEN 170

Query: 188 ----HIMSASEACDWGVVDKVLM 206
                 ++  EA   G+ DKV+ 
Sbjct: 171 NGNGRWLAPEEAVAAGLADKVVE 193


>gi|295112635|emb|CBL31272.1| Protease subunit of ATP-dependent Clp proteases [Enterococcus sp.
           7L76]
          Length = 254

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 66/140 (47%), Gaps = 3/140 (2%)

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
             +++ + INS GG+V  G  IY  ++  +  +    +  A S  S++  AG        
Sbjct: 40  NNEDVEVTINSNGGLVDMGNEIYTALRSYEGHVKVNIV-MAGSAASIIAMAGNTV--AIS 96

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           P  +I++H  + G  G    +++ ++ + K  + L   YV   GK  EE+   +D+   +
Sbjct: 97  PVGQIMIHNVAMGAGGDYHTMDKASEILQKANKSLANAYVSKTGKAKEEILALMDKQTWL 156

Query: 191 SASEACDWGVVDKVLMSRID 210
           +A EA + G  D+++    +
Sbjct: 157 TAEEAVENGFADEIMFENTE 176


>gi|118588978|ref|ZP_01546385.1| probable Clp protease protein [Stappia aggregata IAM 12614]
 gi|118438307|gb|EAV44941.1| probable Clp protease protein [Stappia aggregata IAM 12614]
          Length = 347

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 71/141 (50%), Gaps = 2/141 (1%)

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           L  L       ++++ +NS GG    G+AIY+ ++  K  ++      AAS  S++  AG
Sbjct: 30  LQALAEHGTDNDLTVLLNSGGGYAFEGIAIYNALKAHKGTVTVKIDAIAASAASVIALAG 89

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
           +  +  A   + +++H PSG   G ASD ++ +  + K+  +++ +Y    GK   EV +
Sbjct: 90  DSIVMRA--GSELMIHDPSGSTYGTASDHDKTSAALNKLAEQMSSLYSARSGKDLAEVRQ 147

Query: 183 TLDRDHIMSASEACDWGVVDK 203
            +  +   +A EA + G  D+
Sbjct: 148 IMKDETWFTAEEAVEAGFADE 168


>gi|304389877|ref|ZP_07371836.1| ATP-dependent Clp protease proteolytic subunit [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|304327053|gb|EFL94292.1| ATP-dependent Clp protease proteolytic subunit [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
          Length = 221

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 71/166 (42%), Gaps = 4/166 (2%)

Query: 43  RIVFVTGQIEDHMA--TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           R++ ++G I +       +   +   E       +++++NSPGG V A   IY+ +    
Sbjct: 23  RVLRISGTIAEESWFDDDVTPSIFASELNAGSGPVTIWLNSPGGDVVAAAQIYNMLIDYP 82

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
             ++    G AAS  S+   A         P + +++H P+    G   ++ R    +  
Sbjct: 83  SHVTVNIDGIAASAASV--IAMAASTVAMSPVSMLMIHNPATMAVGDKDELARAMSMLDS 140

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           +K  +   Y +  G +  ++ K +D +  M A  A D G  D++L 
Sbjct: 141 VKESILNAYQEKTGMSRAKLSKLMDAETWMDARAAIDMGFADELLT 186


>gi|229120181|ref|ZP_04249432.1| Clp protease [Bacillus cereus 95/8201]
 gi|228663222|gb|EEL18811.1| Clp protease [Bacillus cereus 95/8201]
          Length = 236

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 71/157 (45%), Gaps = 6/157 (3%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM 108
           G   D  ++ I  +L  + AE     I ++INSPGG V   +AI++  +     I     
Sbjct: 20  GWFADISSSEIRRKLGNINAET----IHVHINSPGGDVFESIAIHNLFKNHNATIIIHID 75

Query: 109 GQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           G AAS  S++  A +K       N  +++H+     +G A  + + A D+ KI   + E 
Sbjct: 76  GLAASGASVIAMAADKV--IMPKNTMLMIHKAWTFAAGNAEQLRKVANDLEKIDTAVTES 133

Query: 169 YVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           Y         E+E  L  +  ++A E    G+ D+++
Sbjct: 134 YTSRFVGERSELETLLAEETWLTAEECLALGLCDEIV 170


>gi|296447012|ref|ZP_06888946.1| peptidase S14 ClpP [Methylosinus trichosporium OB3b]
 gi|296255455|gb|EFH02548.1| peptidase S14 ClpP [Methylosinus trichosporium OB3b]
          Length = 287

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 66/131 (50%), Gaps = 2/131 (1%)

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K +++ INSPGG +  G+AI++ ++  K  ++   MG AAS  SL+  AG++       
Sbjct: 78  EKPVTVSINSPGGDMFEGLAIFNMLKDHKAEVTVKVMGLAASAASLIAMAGDQI--LMGQ 135

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
            + +++H   G   G   D+   A         + EIY    G+T +++   +D +  ++
Sbjct: 136 GSFLMIHNAWGVVVGNRHDMRAGADMFEPFDSAMAEIYAARSGQTGDKIAAMMDAETFIN 195

Query: 192 ASEACDWGVVD 202
           A +A D G  D
Sbjct: 196 AKDARDLGFSD 206


>gi|154482770|ref|ZP_02025218.1| hypothetical protein EUBVEN_00447 [Eubacterium ventriosum ATCC
           27560]
 gi|149736365|gb|EDM52251.1| hypothetical protein EUBVEN_00447 [Eubacterium ventriosum ATCC
           27560]
          Length = 385

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 5/142 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           EI++ INS GG V A +AIY  ++  K  IS    G  AS  +++  AG+          
Sbjct: 66  EITVRINSGGGDVFAAVAIYTRLKEHKAKISVKIDGWCASAATIIAMAGDTIE--ISVGG 123

Query: 134 RILLHQPSGGFSG--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD-HIM 190
             ++H P  G  G    +D+E   +++  IK+ +   Y+    K+ EE++  +  +    
Sbjct: 124 VFMIHDPLAGLIGYYNTTDLENIVKELETIKQSIVNCYMTVTDKSEEEIKSLMTNEGEWF 183

Query: 191 SASEACDWGVVDKVLMSRIDIE 212
           +  EA + G    V+ + +D E
Sbjct: 184 TGEEAVEAGFCTAVMFTDVDTE 205


>gi|85716877|ref|ZP_01047842.1| peptidase S14, ClpP [Nitrobacter sp. Nb-311A]
 gi|85696257|gb|EAQ34150.1| peptidase S14, ClpP [Nitrobacter sp. Nb-311A]
          Length = 283

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 6/150 (4%)

Query: 55  MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASM 114
            A  I A L  +      ++I++ INSPGG +  G++IY+ ++     ++   +G AAS 
Sbjct: 62  TANRISAALRSI----GNRDITVRINSPGGDMFEGISIYNMLRGHPAKVTIEVIGWAASA 117

Query: 115 GSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCG 174
            S++  AG++          +++H   G   G   D+   A         + +IY    G
Sbjct: 118 ASIIAMAGDEIR--MGLGTFMMVHNAWGAVVGNRHDMRETADMFDGFDAAIADIYEARTG 175

Query: 175 KTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
                +EK +D +  M  SEA   G  D V
Sbjct: 176 MKRASIEKLMDAETFMGPSEAVKNGFADVV 205


>gi|15837113|ref|NP_297801.1| hypothetical protein XF0511 [Xylella fastidiosa 9a5c]
 gi|9105364|gb|AAF83321.1|AE003899_13 hypothetical protein XF_0511 [Xylella fastidiosa 9a5c]
          Length = 752

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 71/162 (43%), Gaps = 15/162 (9%)

Query: 50  QIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMG 109
             +   A  + AQL    +      I + INS GGVV+ G+AIY+ +      I     G
Sbjct: 39  WEDGVTAASVIAQL----STVTAPLIHVRINSNGGVVSDGLAIYNALTAHPATIHVTIDG 94

Query: 110 QAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIY 169
            AAS+ SL+  AG    R   PN+ +++H P  G  G A D+   A  +  +   ++  Y
Sbjct: 95  VAASIASLIAQAGTT--RRVYPNSLMMIHGPQTGGWGFAEDLRDTAAMLDTMAAAMHTAY 152

Query: 170 ---VKNCGKTYEEVEKTLD--RDHIMSASEACDWGVVDKVLM 206
                +     E + + L    DH ++A +    G+ D ++ 
Sbjct: 153 TSGATH----PEAIRRMLSDGHDHWLTAQDMIAVGLADTIID 190


>gi|300214157|gb|ADJ78573.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           salivarius CECT 5713]
          Length = 239

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 2/137 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I + I S GG V     IY  ++  K  +     G AAS  S++  AG+       P A
Sbjct: 45  DIVVDIASNGGDVFVASEIYSMLKNNKSNVKVNVTGLAASAASVIAMAGDTV--SIAPTA 102

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           +I++H+      G A D+   A  +  I + +   Y    G    ++ + +  +  ++A 
Sbjct: 103 QIMIHKAWTNMDGNADDLNHEAGVLNNIDKSIASAYELKTGMKQSDLLQMMSNETWLTAQ 162

Query: 194 EACDWGVVDKVLMSRID 210
           +A D G  D+++    D
Sbjct: 163 DAVDKGFADEIMFVNED 179


>gi|153811342|ref|ZP_01964010.1| hypothetical protein RUMOBE_01734 [Ruminococcus obeum ATCC 29174]
 gi|149832469|gb|EDM87553.1| hypothetical protein RUMOBE_01734 [Ruminococcus obeum ATCC 29174]
          Length = 252

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 8/165 (4%)

Query: 51  IEDHMATLICAQLL--FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM 108
            E       C Q +  F+    P  E+++YINS GG V AG+AI+  +       +    
Sbjct: 46  WEAWCDEDTCPQDISDFMNQIEPGAELTVYINSGGGDVFAGIAIHSILSRHTGHKTGIVD 105

Query: 109 GQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           G AAS+ S++L A +  +  +   A+I++H+P     G A D +R   ++ K ++ + +I
Sbjct: 106 GMAASIASVILMACDSIVMSS--GAQIMIHKPLSWAYGNADDFQRLISELDKCQKSITDI 163

Query: 169 YVKNC--GKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           Y+     G T E+V   ++ +  M+A EA +  + D  +  R  +
Sbjct: 164 YMGRVKEGVTEEQVTDLINAETWMTAEEAKE--IFDVQIEERPAV 206


>gi|9634652|ref|NP_038326.1| ORF25 [Streptococcus phage 7201]
 gi|7248482|gb|AAF43518.1|AF145054_26 ORF25 [Streptococcus phage 7201]
          Length = 221

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 4/148 (2%)

Query: 67  EAENPQKE--ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           EA    K+  I+L I S GG V A   IY  ++     I     G AAS  S++  AG+ 
Sbjct: 34  EAIENDKDEEITLNIASNGGDVFAASEIYTMLKASGKRIVVNVQGLAASAASVISMAGDT 93

Query: 125 GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
                 P A+I++H+ S G  G + D+E  +  +  I   +   Y    G    E+   +
Sbjct: 94  VR--ISPTAQIMIHKASTGIRGNSDDLEHQSAVLSSIDESIALAYEMKTGLKQTELLDLM 151

Query: 185 DRDHIMSASEACDWGVVDKVLMSRIDIE 212
            ++  ++A  A D G  D+++ S  + E
Sbjct: 152 AKETWLNAKTAVDKGFADEIMFSDTEEE 179


>gi|257421724|ref|ZP_05598714.1| predicted protein [Enterococcus faecalis X98]
 gi|257163548|gb|EEU93508.1| predicted protein [Enterococcus faecalis X98]
          Length = 230

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 66/140 (47%), Gaps = 3/140 (2%)

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
             +++ + INS GG+V  G  IY  ++  +  +    +  A S  S++  AG        
Sbjct: 16  NNEDVEVTINSNGGLVDMGNEIYTALRSYEGHVKVNIV-MAGSAASIIAMAGNTV--AIS 72

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           P  +I++H  + G  G    +++ ++ + K  + L   YV   GK  EE+   +D+   +
Sbjct: 73  PVGQIMIHNVAMGAGGDYHTMDKASEILQKANKSLANAYVSKTGKAKEEILALMDKQTWL 132

Query: 191 SASEACDWGVVDKVLMSRID 210
           +A EA + G  D+++    +
Sbjct: 133 TAEEAVESGFADEIMFENTE 152


>gi|257081786|ref|ZP_05576147.1| gp4 [Enterococcus faecalis E1Sol]
 gi|256989816|gb|EEU77118.1| gp4 [Enterococcus faecalis E1Sol]
          Length = 230

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 66/140 (47%), Gaps = 3/140 (2%)

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
             +++ + INS GG+V  G  IY  ++  +  +    +  A S  S++  AG        
Sbjct: 16  NNEDVEVTINSNGGLVDMGNEIYTALRSYEGHVKVNIV-MAGSAASIIAMAGNTV--AIS 72

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           P  +I++H  + G  G    +++ ++ + K  + L   YV   GK  EE+   +D+   +
Sbjct: 73  PVGQIMIHNVAMGAGGDYHTMDKASEILQKANKSLANAYVSKTGKAKEEILALMDKQTWL 132

Query: 191 SASEACDWGVVDKVLMSRID 210
           +A EA + G  D+++    +
Sbjct: 133 TAEEAVESGFADEIMFENTE 152


>gi|255973197|ref|ZP_05423783.1| predicted protein [Enterococcus faecalis T1]
 gi|255964215|gb|EET96691.1| predicted protein [Enterococcus faecalis T1]
          Length = 252

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 66/140 (47%), Gaps = 3/140 (2%)

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
             +++ + INS GG+V  G  IY  ++  +  +    +  A S  S++  AG        
Sbjct: 38  NNEDVEVTINSNGGLVDMGNEIYTALRSYEGHVKVNIV-MAGSAASIIAMAGNTV--AIS 94

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           P  +I++H  + G  G    +++ ++ + K  + L   YV   GK  EE+   +D+   +
Sbjct: 95  PVGQIMIHNVAMGAGGDYHTMDKASEILQKANKSLANAYVSKTGKAKEEILALMDKQTWL 154

Query: 191 SASEACDWGVVDKVLMSRID 210
           +A EA + G  D+++    +
Sbjct: 155 TAEEAVESGFADEIMFENTE 174


>gi|255591869|ref|XP_002535618.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis]
 gi|223522515|gb|EEF26765.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis]
          Length = 95

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 37/90 (41%), Positives = 60/90 (66%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           +RL +ER++F+   ++  ++  +   +++L  E+  K++ L+INSPGG V  G+AIYDTM
Sbjct: 6   NRLYRERLLFLGQDVDSEISNQLIGLMVYLSIESETKDLYLFINSPGGWVIPGIAIYDTM 65

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           QF++P + T CMG AASM S +L  G+   
Sbjct: 66  QFVRPDVQTVCMGLAASMASFILVGGKITK 95


>gi|237738215|ref|ZP_04568696.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           mortiferum ATCC 9817]
 gi|229420095|gb|EEO35142.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
           mortiferum ATCC 9817]
          Length = 361

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 70/164 (42%), Gaps = 7/164 (4%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI--KP 101
           I     +     +++  ++   L      K++ L INSPGG V   +A+Y  ++      
Sbjct: 27  ICKWAWEEYGETSSVTFSK--QLANLKNVKKLELKINSPGGDVFEAVAMYHEIKRFAQGK 84

Query: 102 PISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS-GQASDIERHAQDIVK 160
            ++ +  G AAS  ++L  A  K           ++H P          ++    + + K
Sbjct: 85  EVTAYIDGMAASAATILTLAANKT--IMGKGCYFMIHNPLMYMGYANVEEMNEAIEHLNK 142

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            K  L ++Y + C  + +E+ + +D+    +A EA   G +D++
Sbjct: 143 TKDNLLDLYEEKCKLSRDEIAEKMDKTTWYTAEEALQAGFIDEI 186


>gi|90961265|ref|YP_535181.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus phage
           Sal2]
 gi|90820459|gb|ABD99098.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus phage
           Sal2]
          Length = 239

 Score =  104 bits (261), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 2/137 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I + I S GG V     IY  ++     +     G AAS  S++  AG+       P A
Sbjct: 45  DIVVDIASNGGDVFVASEIYSMLKNNASNVKVNVTGLAASAASVIAMAGDTV--SIAPTA 102

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           +I++H+      G A D+   A  +  I + +   Y    G    ++ + +  +  ++A 
Sbjct: 103 QIMIHKAWTNMDGNADDLNHEAGVLNNIDKSIASAYELKTGMKQSDLLQMMSNETWLTAQ 162

Query: 194 EACDWGVVDKVLMSRID 210
           +A D G  D+++    D
Sbjct: 163 DAVDKGFADEIMFVNED 179


>gi|301299543|ref|ZP_07205809.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300852844|gb|EFK80462.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 239

 Score =  104 bits (261), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 60/140 (42%), Gaps = 2/140 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I + I S GG V     IY  ++     +     G AAS  S++  AG+       P A
Sbjct: 45  DIVVDIASNGGDVFVASEIYSMLKNNASNVKVNVTGLAASAASVIAMAGDTV--SIAPTA 102

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           +I++H+      G A D+   A  +  I + +   Y    G    ++ + +  +  ++A 
Sbjct: 103 QIMIHKAWTNMDGNADDLNHEAGVLNNIDKSIASAYELKTGMKQSDLLQMMSNETWLTAQ 162

Query: 194 EACDWGVVDKVLMSRIDIEE 213
           +A D G  D+++    + E 
Sbjct: 163 DAVDKGFADEIMFVNEEDEP 182


>gi|217961372|ref|YP_002339940.1| Clp protease [Bacillus cereus AH187]
 gi|217065025|gb|ACJ79275.1| Clp protease [Bacillus cereus AH187]
          Length = 230

 Score =  104 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 37/128 (28%), Positives = 69/128 (53%), Gaps = 4/128 (3%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K++++YINS GG V AGMAIY+ ++  +   +    G   S+ S++  AG+K       N
Sbjct: 50  KDLNIYINSGGGSVFAGMAIYNMIKRHEGYKTVHIDGLGGSIASVIAFAGDKL--IVPSN 107

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC--GKTYEEVEKTLDRDHIM 190
           A +++H+P  G  G A+D  + A D+  I+  +  +Y  N   G   EE+ + +  +  +
Sbjct: 108 AYLMIHKPWNGTYGNANDFRKMADDLDAIEEGIINVYKDNLKEGVDIEEIREMVQNETWL 167

Query: 191 SASEACDW 198
           +  +A ++
Sbjct: 168 NGLKASEY 175


>gi|298290031|ref|YP_003691970.1| peptidase S14 ClpP [Starkeya novella DSM 506]
 gi|296926542|gb|ADH87351.1| peptidase S14 ClpP [Starkeya novella DSM 506]
          Length = 293

 Score =  104 bits (260), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 79/163 (48%), Gaps = 7/163 (4%)

Query: 55  MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASM 114
            A  + +QL  +      + + + INSPGG +  G+AI++ ++     I+   MG AAS 
Sbjct: 71  TAKKVASQLKAI----GDRPVEVQINSPGGDMFEGIAIFNVLREHPQDITVKVMGMAASA 126

Query: 115 GSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCG 174
            S++  AG+     A   + +++H       G   D+   A+ +    + + ++Y     
Sbjct: 127 ASIIAMAGDHVEMGAA--SFLMIHNCWVLAIGNRHDMRETAEWLEPFDQAMVDLYAARTS 184

Query: 175 KTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS-RIDIEEKSK 216
           +   ++ K +D +  MS S+A + G  D +L S +I  +EK++
Sbjct: 185 QKPADIAKWMDAETYMSGSQAVERGFADALLASDQITTDEKAQ 227


>gi|92117911|ref|YP_577640.1| peptidase S14, ClpP [Nitrobacter hamburgensis X14]
 gi|91800805|gb|ABE63180.1| peptidase S14, ClpP [Nitrobacter hamburgensis X14]
          Length = 351

 Score =  104 bits (260), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 63/137 (45%), Gaps = 2/137 (1%)

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           L  L       ++++ +NS GG+V   +AIY+ +   K  ++      AAS  +++  AG
Sbjct: 30  LAALAEHGRDNDLTVRLNSGGGIVNDAIAIYNALSTHKGKVTIQVDAIAASAATVIAMAG 89

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
           ++ +      + +++H P     G   D E+  + +     ++  IY +  G   ++V  
Sbjct: 90  QEIVMRV--GSIMMIHDPMNVTFGNIEDHEKTIEQLTAYANQMASIYAERSGNELDDVRS 147

Query: 183 TLDRDHIMSASEACDWG 199
            +  +  ++A +A + G
Sbjct: 148 DMKAEIWLTAEQAVEKG 164


>gi|307687451|ref|ZP_07629897.1| peptidase S14 ClpP [Clostridium cellulovorans 743B]
          Length = 202

 Score =  104 bits (260), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 64/131 (48%), Gaps = 2/131 (1%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           ++INSPGG   A   IY+ +   K  ++    G AAS  S++  AG++      P + ++
Sbjct: 1   MWINSPGGDCVAAAQIYNMLSNYKGKVTVKIDGIAASAASVIAMAGKEV--LMSPVSMLM 58

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +H P     G  +++++    + ++K  +   YV   G +  ++   +D +  M+A++A 
Sbjct: 59  IHNPMTIAMGDHAEMQKAIDMLAEVKESIINAYVLKTGLSRAKLSHLMDSETWMNANKAV 118

Query: 197 DWGVVDKVLMS 207
           + G  D  L  
Sbjct: 119 ELGFADGTLTR 129


>gi|228899164|ref|ZP_04063435.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis IBL 4222]
 gi|228860497|gb|EEN04886.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis IBL 4222]
          Length = 197

 Score =  104 bits (260), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 76/136 (55%), Gaps = 6/136 (4%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L   + +  +++Y+NS GG V AG+AIY+ ++  K   + +  G AAS+ S++  AG+  
Sbjct: 9   LGQLDDKSNLNIYVNSGGGSVFAGLAIYNMLKRNKAQKTVYVDGVAASIASVIALAGD-- 66

Query: 126 MRFALP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC--GKTYEEVEK 182
            R  +P NA +++H+P     G A+ + + A+D+  ++  +  +Y +N   G   E +++
Sbjct: 67  -RVVVPSNAFLMVHKPWTVSRGNANVLRKMAEDLDNLEAGIMNVYKENLKEGIEMEVIQQ 125

Query: 183 TLDRDHIMSASEACDW 198
            +D +  +S  EA  +
Sbjct: 126 LVDAETWLSGEEAEKY 141


>gi|281416390|ref|YP_003347414.1| scaffolding protein [Streptococcus phage Abc2]
 gi|226823041|gb|ACO83168.1| scaffolding protein [Streptococcus phage Abc2]
          Length = 222

 Score =  104 bits (260), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 2/146 (1%)

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           A +  +EI+L I S GG V A   IY  ++     I     G AAS  S++  AG     
Sbjct: 37  ANDEDEEITLNIASNGGDVFAASEIYTMLRDSGKRIVVNIQGLAASAASVISMAGNTVR- 95

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
              P A I++H+ S GF G + D+E  +  +  I   +   Y    G    E+ + + ++
Sbjct: 96  -ISPTAHIMIHKASSGFVGNSDDMEHQSVVLNSIDESIALAYEMKTGLKQSELLELMAKE 154

Query: 188 HIMSASEACDWGVVDKVLMSRIDIEE 213
             ++A  A D G  D+++    D E+
Sbjct: 155 TWLNAKTAVDKGFADEIMFFGDDEEQ 180


>gi|291550140|emb|CBL26402.1| Protease subunit of ATP-dependent Clp proteases [Ruminococcus
           torques L2-14]
          Length = 252

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 71/170 (41%), Gaps = 2/170 (1%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I+  + K           D   T        L+A     EI +Y NS GG V  G AIY+
Sbjct: 21  IFDEIRKIGPFNWDTWQYDDSETSAKHFKELLDAIPETDEIKIYFNSNGGSVDQGTAIYN 80

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            +Q      +   MG   S+   +L A +K  R        ++H      +G A+D+   
Sbjct: 81  MLQQHGSYKTGIVMGGCHSIAFTILQACDK--RIMGQGTTAIIHDMWETVTGNAADLRAE 138

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           A ++         ++++    + EE+ + + +   +S  +A ++G++D++
Sbjct: 139 ADNLDVAMDSCVALFMQRATVSEEELREMMHKTTTLSPQKALEYGLIDEI 188


>gi|327439480|dbj|BAK15845.1| protease subunit of ATP-dependent Clp protease [Solibacillus
           silvestris StLB046]
          Length = 245

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 65/128 (50%), Gaps = 2/128 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +I + +NSPGG    G+AIY+ ++     ++    G A S  S++  AG++        A
Sbjct: 67  DIVVRLNSPGGSAFDGIAIYNRLKEHPGKVTIHVDGWACSAASIIAMAGDEV--IMGTGA 124

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H+ S    G  +D+ + A  + +++  + ++Y+     + EE+ + ++ +   SA 
Sbjct: 125 MMMIHEASNIVWGTKNDMRKVADMLEELEAGIVDVYMTKAKISREEITEQMNAETWFSAL 184

Query: 194 EACDWGVV 201
           +A + G  
Sbjct: 185 KAVEIGFA 192


>gi|13477031|ref|NP_108601.1| ClpP protease [Mesorhizobium loti MAFF303099]
 gi|14027794|dbj|BAB54387.1| mlr8523 [Mesorhizobium loti MAFF303099]
          Length = 281

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 67/157 (42%), Gaps = 10/157 (6%)

Query: 48  TGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFC 107
            G     MA  + +            +I + INSPGG +  G+AIY+ ++  K  +S   
Sbjct: 59  GGFTAKRMANALRS--------IGTNDIVVKINSPGGDMFEGIAIYNLLREHKAKVSVQV 110

Query: 108 MGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNE 167
           MG AAS  S++  AG++          +++H   G   G   D+   A         + +
Sbjct: 111 MGWAASAASIIAMAGDEI--SMGLGTFMMVHNAWGMVVGNRHDMRDAATLFDGFDSAIAD 168

Query: 168 IYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           IY    G    ++EK +D +  M  ++A   G  DKV
Sbjct: 169 IYQARTGLARADIEKLMDAETFMGPTDAVAKGFADKV 205


>gi|302385169|ref|YP_003820991.1| peptidase S14 ClpP [Clostridium saccharolyticum WM1]
 gi|302195797|gb|ADL03368.1| peptidase S14 ClpP [Clostridium saccharolyticum WM1]
          Length = 252

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 70/151 (46%), Gaps = 2/151 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L      + I L+INS GG V  G+AIY+ ++           G A S+  L+L A ++ 
Sbjct: 54  LGEIPDGQTIELHINSNGGSVKEGVAIYNLLKQKSNHKIGIVDGVAHSVAFLILQACDER 113

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                     L+H      +G A+ + ++A D+  +     +++++    T EE+   ++
Sbjct: 114 KMCL--GTTALVHNMWMHCAGNATQLRKYADDLDDMMEANRQVFLERASITEEELTTLME 171

Query: 186 RDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
            +  ++  +A ++G++D++   +    +  K
Sbjct: 172 AETYLTPDKAIEYGLIDEIYGKKSAAPQNEK 202


>gi|317129435|ref|YP_004095717.1| peptidase S14 ClpP [Bacillus cellulosilyticus DSM 2522]
 gi|315474383|gb|ADU30986.1| peptidase S14 ClpP [Bacillus cellulosilyticus DSM 2522]
          Length = 250

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/145 (30%), Positives = 71/145 (48%), Gaps = 2/145 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L  E   +++ + INS GG V AG  IY  ++  K  +    MG AAS  S+    G K 
Sbjct: 34  LIEEANGEDLEVEINSGGGSVWAGSEIYTLLKSCKQNVVVNIMGIAASAASVAAMGG-KL 92

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
           +R A P  +I++H    G SG   ++E  A+ +  + R +   Y+   GK  EE+   + 
Sbjct: 93  IRIA-PTGQIMIHNSMSGASGDHRELEHAAEMLKGVDRSIANAYILKTGKNMEELLSLMA 151

Query: 186 RDHIMSASEACDWGVVDKVLMSRID 210
           ++  M A EA + G  D+++    D
Sbjct: 152 KETYMGAKEAKELGFADEIMFDEDD 176


>gi|225076698|ref|ZP_03719897.1| hypothetical protein NEIFLAOT_01749 [Neisseria flavescens
           NRL30031/H210]
 gi|224951974|gb|EEG33183.1| hypothetical protein NEIFLAOT_01749 [Neisseria flavescens
           NRL30031/H210]
          Length = 281

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 65/142 (45%), Gaps = 6/142 (4%)

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            KE+ + INSPGG    G++IY+ +      ++   +G AAS  S++  AG++       
Sbjct: 74  DKEVVVNINSPGGDYFEGISIYNLLAQHPAKVTVQIVGLAASAASVIAMAGDEI--LMGE 131

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
            + +++H       G   D+      + +I   + ++Y      +  E+   +DR+  + 
Sbjct: 132 GSFLMIHNAWSLAIGNRHDLAGSIDTLSQIDDAMADLYAARSSLSKAEIVGMMDRESWIG 191

Query: 192 ASEACDWGVVDKVLMSRIDIEE 213
            S+A + G  D      ID++E
Sbjct: 192 KSKALEDGFADG----EIDVKE 209


>gi|315221880|ref|ZP_07863792.1| Clp protease [Streptococcus anginosus F0211]
 gi|315189113|gb|EFU22816.1| Clp protease [Streptococcus anginosus F0211]
          Length = 227

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 2/134 (1%)

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
            P + + + INS GG V     IY  ++  K  ++   +G AAS  S++  AG+      
Sbjct: 36  FPSEPLEVRINSSGGDVYTANEIYAKLRGHKGKVTVKIVGLAASAASVIAMAGDVIE--M 93

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
            P A +++H  S    G +  ++R  + +      L   Y +  G   E++++ ++R+  
Sbjct: 94  NPIALMMIHNVSTLTYGNSQQLKRQIETMDVANDALATAYQERTGLAKEKIKEMMERETW 153

Query: 190 MSASEACDWGVVDK 203
           +S   A   G  DK
Sbjct: 154 LSCDTAISLGFADK 167


>gi|319939551|ref|ZP_08013911.1| hypothetical protein HMPREF9459_00899 [Streptococcus anginosus
           1_2_62CV]
 gi|319811537|gb|EFW07832.1| hypothetical protein HMPREF9459_00899 [Streptococcus anginosus
           1_2_62CV]
          Length = 227

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 2/134 (1%)

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
            P + + + INS GG V     IY  ++  K  ++   +G AAS  S++  AG+      
Sbjct: 36  FPSEPLEVRINSSGGDVYTANEIYAKLRGHKGKVTVKIVGLAASAASVIAMAGDVIE--M 93

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
            P A +++H  S    G +  ++R  + +      L   Y +  G   E++++ ++R+  
Sbjct: 94  NPIALMMIHNVSTLTYGNSQQLKRQIETMDVANDALATAYQERTGLAKEKIKEMMERETW 153

Query: 190 MSASEACDWGVVDK 203
           +S   A   G  DK
Sbjct: 154 LSCDTAISLGFADK 167


>gi|75675735|ref|YP_318156.1| peptidase S14, ClpP [Nitrobacter winogradskyi Nb-255]
 gi|74420605|gb|ABA04804.1| peptidase S14, ClpP [Nitrobacter winogradskyi Nb-255]
          Length = 281

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 2/133 (1%)

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            +++++ INSPGG +  G+AIY+ ++     ++   +G AAS  S++  AG++       
Sbjct: 75  DRDVTVKINSPGGDMFEGIAIYNLLRGHPARVTVEVLGWAASAASIIAMAGDEIR--MGL 132

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
              +++H   G   G   D+   A+        + +IY    G     +EK +D +  M 
Sbjct: 133 GTFMMVHNAWGVVIGNRHDMRESAELFDGFDSAIVDIYEARTGLKRSAIEKLMDAETFMG 192

Query: 192 ASEACDWGVVDKV 204
            SEA   G  D V
Sbjct: 193 PSEAVKNGFADLV 205


>gi|9632423|ref|NP_049395.1| putative scaffolding protein [Streptococcus phage DT1]
 gi|4530143|gb|AAD21883.1| putative scaffolding protein [Streptococcus phage DT1]
          Length = 222

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 2/145 (1%)

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
            +  +EI+L I S GG V A   IY  ++     I     G AAS  S++  AG      
Sbjct: 38  NDEDEEITLNIASNGGDVFAASEIYTMLRDSGKRIVVNIQGLAASAASVISMAGNTVR-- 95

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
             P A I++H+ S GF G + D+E  +  +  I   +   Y    G    E+ + + ++ 
Sbjct: 96  ISPTAHIMIHKASSGFVGNSDDMEHQSVVLNSIDESIALAYEMKTGLKQSELLELMAKET 155

Query: 189 IMSASEACDWGVVDKVLMSRIDIEE 213
            ++A  A D G  D+++    D E+
Sbjct: 156 WLNAKTAVDKGFADEIMFFGDDEEQ 180


>gi|312886089|ref|ZP_07745712.1| peptidase S14 ClpP [Mucilaginibacter paludis DSM 18603]
 gi|311301439|gb|EFQ78485.1| peptidase S14 ClpP [Mucilaginibacter paludis DSM 18603]
          Length = 378

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 71/145 (48%), Gaps = 13/145 (8%)

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
            A+L+ L+A  P K I ++INSPGGVV  G  IY  +      + T  +G  AS+ +++ 
Sbjct: 38  MAELMALDAMRP-KSIEIWINSPGGVVMDGYNIYAAILKSVTKVDTVGVGCMASIAAVIF 96

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
            AG    R  +  + ++ H P   F G  +      + +  ++  ++++     GK   E
Sbjct: 97  QAGRT--RTMMDYSWLMYHNP---FGGDDT------KVLEVMRESISKMVA-RSGKPEAE 144

Query: 180 VEKTLDRDHIMSASEACDWGVVDKV 204
           +   + ++  ++A EA ++G  D +
Sbjct: 145 ILAMMQKETYITAQEALEYGFADAI 169


>gi|75764057|ref|ZP_00743661.1| ATP-dependent endopeptidase clp proteolytic subunit clpP [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|74488455|gb|EAO52067.1| ATP-dependent endopeptidase clp proteolytic subunit clpP [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
          Length = 244

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 76/136 (55%), Gaps = 6/136 (4%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L   + +  +++Y+NS GG V AG+AIY+ ++  K   + +  G AAS+ S++  AG+  
Sbjct: 56  LGQLDDKSNLNIYVNSGGGSVFAGLAIYNMLKRNKAQKTVYVDGVAASIASVIALAGD-- 113

Query: 126 MRFALP-NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC--GKTYEEVEK 182
            R  +P NA +++H+P     G A+ + + A+D+  ++  +  +Y +N   G   E +++
Sbjct: 114 -RVVVPSNAFLMVHKPWTVSRGNANVLRKMAEDLDNLEAGIMNVYKENLKEGIEMEVIQQ 172

Query: 183 TLDRDHIMSASEACDW 198
            +D +  +S  EA  +
Sbjct: 173 LVDAETWLSGEEAEKY 188


>gi|17488507|ref|NP_510985.1| Clp protease [Listeria phage 2389]
 gi|254933557|ref|ZP_05266916.1| clp protease [Listeria monocytogenes HPB2262]
 gi|17402412|emb|CAC85560.1| Clp protease [Listeria phage PSA]
 gi|293585121|gb|EFF97153.1| clp protease [Listeria monocytogenes HPB2262]
          Length = 248

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 74/168 (44%), Gaps = 5/168 (2%)

Query: 47  VTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTF 106
           +     D + +      L   + +    I++++NS GG V   +AI++ ++     IS +
Sbjct: 33  IGSGWFDDITSSEVQNFLKTSSVSQ---INVHVNSGGGDVFESIAIHNLLKAHPAKISIY 89

Query: 107 CMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLN 166
               A S  S++  AG++       NA +++H+     +G A +  + A D+ KI   + 
Sbjct: 90  IDALAGSGASVIAMAGDEI--IMPSNAMMMIHKAWTIAAGNADEFRKVANDMDKIDHAVT 147

Query: 167 EIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           E Y +      EE+   L  +  ++A E    G  D +    ++ EE+
Sbjct: 148 ESYTERFVGEREELVTLLTNEEWLTAEECVTLGFCDSIGEIELNEEEQ 195


>gi|254555672|ref|YP_003062089.1| Clp protease domain protein [Lactobacillus plantarum JDM1]
 gi|254044599|gb|ACT61392.1| Clp protease domain protein [Lactobacillus plantarum JDM1]
          Length = 247

 Score =  101 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 68/149 (45%), Gaps = 2/149 (1%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
                + +     +    + + INS GG++ AG  IY  +   +  +    +G AAS  S
Sbjct: 25  DSTAPKDVIDALPDDGSTVEVDINSGGGLMDAGTEIYTALMAYQGKVMVNIVGMAASSAS 84

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
           L+  AG        P  +I++H  +GG  G   D  + ++ + +    +   Y    G +
Sbjct: 85  LIAMAGNPTR--ISPVGQIMIHNVAGGLRGDYRDQAKLSEILKQSSEAIANAYHLKTGLS 142

Query: 177 YEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            E+++  +D +  ++A +A + G VD+++
Sbjct: 143 MEDLQAKMDSETYLNADQAKELGFVDEIM 171


>gi|239638102|ref|ZP_04679061.1| serine protease [Staphylococcus warneri L37603]
 gi|239596385|gb|EEQ78923.1| serine protease [Staphylococcus warneri L37603]
          Length = 258

 Score =  101 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 38/144 (26%), Positives = 71/144 (49%), Gaps = 3/144 (2%)

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
            L+A     E+ + INS GG V +G+ IY+ ++     I+    G AAS+ S++  AG+ 
Sbjct: 30  QLKAMGDVDEVVVNINSNGGDVFSGVTIYNMLRRFDAHITVNVDGLAASIASVIAMAGDT 89

Query: 125 GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYV-KNCGKTYEEVEKT 183
                  NA +++H       G A   ++ A+D+ +I   +   YV KN    +  ++  
Sbjct: 90  IN--MPGNAMLMVHNAWTVNEGDARSFKKRAEDLERINSVVFNSYVDKNPDIDHALLQDY 147

Query: 184 LDRDHIMSASEACDWGVVDKVLMS 207
           +D +  ++A EA   G++D +  +
Sbjct: 148 MDEETWLTAKEAKKLGLIDNITEN 171


>gi|169829216|ref|YP_001699374.1| phage protein [Lysinibacillus sphaericus C3-41]
 gi|168993704|gb|ACA41244.1| phage protein [Lysinibacillus sphaericus C3-41]
          Length = 355

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 70/146 (47%), Gaps = 2/146 (1%)

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
             Q +     N +KE+ + INSPGG V A   I+  ++       +   G  AS  S++ 
Sbjct: 32  IMQQIDRAINNQEKELVVNINSPGGSVYAASEIWTHIKKYPGNSVSEISGVCASAASIIA 91

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
            A +K      P   +++H  S    G   ++E   Q +++    + + Y +   K+ EE
Sbjct: 92  LASKKV--VIAPVGALMIHNASVIAEGDYREMESMKQLLIQTNDAIMQTYKEKTKKSDEE 149

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVL 205
           +++ +D +  M+A +A + G VD+++
Sbjct: 150 LKQMMDAETWMNAQQAVENGFVDEIM 175


>gi|320540565|ref|ZP_08040215.1| Clp protease domain-containing protein [Serratia symbiotica str.
           Tucson]
 gi|320029496|gb|EFW11525.1| Clp protease domain-containing protein [Serratia symbiotica str.
           Tucson]
          Length = 285

 Score =  101 bits (251), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 68/159 (42%), Gaps = 8/159 (5%)

Query: 46  FVTGQIEDH--MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPI 103
            +          A  I A L  LE     K+I++ INSPGG +  G+ I++ +      +
Sbjct: 49  TIGQDWAGEGITAKRIGAILRSLE----DKDITVNINSPGGDLFEGLTIFNQLLEYAGKV 104

Query: 104 STFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKR 163
           +   +G AAS  S++  +G++       +A +++H   G   G   D    A+ +     
Sbjct: 105 TVKILGLAASAASIIAMSGDEIQ--IGRSAFLMIHNTWGMAVGNRHDFADIAEKMTPFDF 162

Query: 164 RLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
            L +IYV   G   + +   +D +  +   EA + G  D
Sbjct: 163 ALRDIYVARTGMDEKTITAMMDNETWIHGGEAVEKGFAD 201


>gi|260587185|ref|ZP_05853098.1| ClpP protease family protein [Blautia hansenii DSM 20583]
 gi|260542380|gb|EEX22949.1| ClpP protease family protein [Blautia hansenii DSM 20583]
          Length = 416

 Score =  101 bits (251), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 85/190 (44%), Gaps = 5/190 (2%)

Query: 26  TNRGERSYDIYSRLLKERIV-FVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG 84
           T   E    +Y  ++ ++ V + TG+ E  +       +  L A   +  I++ +NS GG
Sbjct: 30  TGDDEGEITLYGDVMSQQPVDWWTGEPEPGLFITPEGFMEDLAAVKDKGHITVKLNSCGG 89

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
            +  G+AI++ ++ +   ++    G AAS  S+++ AG+    +  P + I++H  S   
Sbjct: 90  DLYTGIAIHNALKALSGEVNVIVEGIAASAASVIMCAGDTVTVY--PGSLIMIHGVSVML 147

Query: 145 SG--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
                  D+++  + +   +R + EIY    G   + +   + ++   +  EA + G  D
Sbjct: 148 WDYMNMQDMKQLMKGMDASERAVAEIYNSKTGIEVDTLRSMMTKETWFTGREALEKGFAD 207

Query: 203 KVLMSRIDIE 212
            +     D E
Sbjct: 208 AIKEDEDDPE 217


>gi|257439336|ref|ZP_05615091.1| ClpP protease family protein [Faecalibacterium prausnitzii A2-165]
 gi|283798244|ref|ZP_06347397.1| ClpP protease family protein [Clostridium sp. M62/1]
 gi|257198211|gb|EEU96495.1| ClpP protease family protein [Faecalibacterium prausnitzii A2-165]
 gi|291074025|gb|EFE11389.1| ClpP protease family protein [Clostridium sp. M62/1]
          Length = 416

 Score =  101 bits (251), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 85/190 (44%), Gaps = 5/190 (2%)

Query: 26  TNRGERSYDIYSRLLKERIV-FVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGG 84
           T   E    +Y  ++ ++ V + TG+ E  +       +  L A   +  I++ +NS GG
Sbjct: 30  TGDDEGEITLYGDVMSQQPVDWWTGEPEPGLFITPEGFMEDLAAVKDKGHITVKLNSCGG 89

Query: 85  VVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
            +  G+AI++ ++ +   ++    G AAS  S+++ AG+    +  P + I++H  S   
Sbjct: 90  DLYTGIAIHNALKALSGEVNVIVEGIAASAASVIMCAGDTVTVY--PGSLIMIHGVSVML 147

Query: 145 SG--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
                  D+++  + +   +R + EIY    G   + +   + ++   +  EA + G  D
Sbjct: 148 WDYMNMQDMKQLMKGMDASERAVAEIYNSKTGIEVDTLRSMMTKETWFTGREALEKGFAD 207

Query: 203 KVLMSRIDIE 212
            +     D E
Sbjct: 208 AIKEDEDDPE 217


>gi|33600679|ref|NP_888239.1| phage-related Clp protease [Bordetella bronchiseptica RB50]
 gi|33568279|emb|CAE32191.1| phage-related Clp protease [Bordetella bronchiseptica RB50]
          Length = 291

 Score =  101 bits (251), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 47/199 (23%), Positives = 93/199 (46%), Gaps = 20/199 (10%)

Query: 18  LVPMVVEQTNRG---------ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68
           + P  +E+ + G         ER+  +Y  +  +   + TG+     A  I + L  + A
Sbjct: 22  MSPRALERWDSGVRAAVEDDAERTISVYDVIGYD---WWTGE--GVTAKRIASALRSMGA 76

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
                 +++ +NSPGG +  G+AIY+ ++  +  ++   +G AAS  S++  AG+K  R 
Sbjct: 77  ----GPVTVNVNSPGGDMFEGLAIYNLLREHQGEVTVKVLGLAASAASIIAMAGDK--RQ 130

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
                 +++H       G   D+   A  +      + +IYV + G+   EV++ +D + 
Sbjct: 131 IARAGFLMVHNCWVNAQGNRHDLREFADTMEPFDAAMADIYVASSGQDLGEVQRQMDGET 190

Query: 189 IMSASEACDWGVVDKVLMS 207
            +  S+A + G  D++L S
Sbjct: 191 WIGGSQAIEQGYADELLPS 209


>gi|297275903|ref|XP_001087805.2| PREDICTED: putative ATP-dependent Clp protease proteolytic subunit,
           mitochondrial [Macaca mulatta]
          Length = 179

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/80 (55%), Positives = 59/80 (73%)

Query: 13  DVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ 72
              L L+P+VVEQT RGER+YDIYSRLL+ERIV V G I+D +A+L+ AQLLFL++E+ +
Sbjct: 53  ARALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNK 112

Query: 73  KEISLYINSPGGVVTAGMAI 92
           K I +YINSP   +     +
Sbjct: 113 KPIHMYINSPESAMERDRYM 132



 Score = 46.0 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 19/27 (70%)

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMS 207
           E  ++RD  MS  EA ++G++DKVL+ 
Sbjct: 123 ESAMERDRYMSPMEAQEFGILDKVLVH 149


>gi|55792477|gb|AAV65338.1| plastid catalytic subunit of ClpP5 protease [Prototheca
           wickerhamii]
          Length = 251

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/117 (35%), Positives = 64/117 (54%), Gaps = 9/117 (7%)

Query: 26  TNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG-- 83
              G    D+ S LL  RI ++   +   +  L+ ++LL+L   +P K + +YINS G  
Sbjct: 135 RAPGRAPPDLPSLLLDGRICYIGMPLVPAVTELVISELLWLNYSSPTKPVYVYINSTGSQ 194

Query: 84  -------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
                  G  T   AI DTM +I+P I T  +GQA    ++LL++G+KG RFALP++
Sbjct: 195 REGGESVGFETEATAIMDTMAYIRPDIYTLVIGQACGNAAMLLASGKKGHRFALPHS 251


>gi|54308549|ref|YP_129569.1| protease/scaffold protein [Photobacterium profundum SS9]
 gi|46912978|emb|CAG19767.1| hypothetical protease/scaffold protein [Photobacterium profundum
           SS9]
          Length = 267

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 2/132 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           + I L INSPGG V A   +   ++  K  ++    G AAS  S L  AG++        
Sbjct: 76  QNIHLRINSPGGSVFAARTMEQALREHKATVTVHIDGLAASAASFLAMAGDEI--IMSDG 133

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A +++H+      G A D+   A  + K+   L + Y K  G         +  +   +A
Sbjct: 134 AMMMIHKAWTVSWGNADDLLAEATLLEKLDGTLAKTYAKRAGGDESTFADYMRNETWFTA 193

Query: 193 SEACDWGVVDKV 204
            EA   G+ D +
Sbjct: 194 EEAVSAGLADTI 205


>gi|48697263|ref|YP_025030.1| putative ClpP-like protease [Lactobacillus phage phiAT3]
 gi|47607154|gb|AAT36490.1| putative ClpP-like protease [Lactobacillus phage phiAT3]
          Length = 228

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 60/131 (45%), Gaps = 2/131 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
            +++L I S GG V     I + ++  +  ++   M  A S  S++     K      P 
Sbjct: 41  SDVTLEITSNGGEVDPATEICNALRSYQGNVTAKVMSNAYSAASIVAMGANKVQ--MAPG 98

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A++++H+ S   SG + +++  +  +      +  +Y    GK  ++    +D++  + A
Sbjct: 99  AKMMIHRASSDASGNSHEMDAASGMLQTTDSAIASLYSAKTGKPADDFLALMDKETWLDA 158

Query: 193 SEACDWGVVDK 203
            +A + G+ D+
Sbjct: 159 DQAIELGLADE 169


>gi|229176194|ref|ZP_04303685.1| Peptidase S14 ClpP [Bacillus cereus MM3]
 gi|228607289|gb|EEK64620.1| Peptidase S14 ClpP [Bacillus cereus MM3]
          Length = 241

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/210 (23%), Positives = 89/210 (42%), Gaps = 16/210 (7%)

Query: 6   CAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF 65
             K D+   +L L      +  + E   DIY        +  +   E   A  I  +L  
Sbjct: 1   MYKNDAFKKYLNL------ERPKNEGENDIYV----YGTIGESWWEESVSANAIKRKL-- 48

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
             +     +I LYINS GG V  G++IY+ ++     +     G AAS  SL+  AG++ 
Sbjct: 49  --SNVKDGDIHLYINSFGGSVFDGISIYNQLKRHSSKVIVHVDGIAASAASLIAMAGDEI 106

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N+ +++H+ S    G     E+    + KI + +   Y+K       E+E+ L 
Sbjct: 107 --IMPANSMLMVHRASTFAWGNREVFEQQLNALDKIDQSVTNTYMKRFVGERSEMEELLK 164

Query: 186 RDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
            +  ++A E   +G+ D++     +  E+S
Sbjct: 165 NETWLTAEECKAFGLCDEIADETEEPNEQS 194


>gi|325914956|ref|ZP_08177288.1| protease subunit of ATP-dependent protease [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325538849|gb|EGD10513.1| protease subunit of ATP-dependent protease [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 728

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 5/169 (2%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLE--AENPQKEISLYINSPGGVVTAGMAI 92
           I +R      V + G I D + +   + L   E   +     I + INS GGVV  G+AI
Sbjct: 19  IEARANDVAEVMIYGTIGDSLWSESVSALELAEQINQITASTIHVRINSGGGVVADGIAI 78

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIE 152
           Y+ +         F  GQAAS+ SL+  AG + + +A   + +++H P    +G AS   
Sbjct: 79  YNALSQHAAHKVVFVDGQAASIASLIAMAGNEVVMYAS--SLLMVHAPHTIAAGNASSFR 136

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD-RDHIMSASEACDWGV 200
           ++A  +      + E Y    GK  E  +   D  DH  + ++A ++G 
Sbjct: 137 QYATALDAHAGAMLEAYATKTGKRSEVEQLLTDGADHWYTGAQAVEFGF 185


>gi|229193795|ref|ZP_04320727.1| Peptidase S14 ClpP [Bacillus cereus ATCC 10876]
 gi|228589678|gb|EEK47565.1| Peptidase S14 ClpP [Bacillus cereus ATCC 10876]
          Length = 241

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/209 (23%), Positives = 87/209 (41%), Gaps = 16/209 (7%)

Query: 6   CAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF 65
             K D+   +L L      +  + E   DIY        +  +   E   A  I  +L  
Sbjct: 1   MYKNDAFKKYLNL------EKPKNEGENDIYV----YGTIGESWWEESVSANAIKRKL-- 48

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
                   +I LYINS GG V  G++IY+ ++     +     G AAS  SL+  AG++ 
Sbjct: 49  --NNVKDGDIHLYINSFGGSVFDGISIYNQLKRHSSKVIVHVDGIAASAASLIAMAGDEI 106

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                 N+ +++H+ S    G     E+    + KI + +   Y+K       E+E  L 
Sbjct: 107 --IMPANSMLMVHRASTFAWGNREVFEQQLNALDKIDQSVTNTYMKRFVGERSEMEDLLK 164

Query: 186 RDHIMSASEACDWGVVDKVLMSRIDIEEK 214
            +  ++A E   +G+ D++   + D  E+
Sbjct: 165 NETWLTAEECKAFGLCDEIADEKEDPNEE 193


>gi|21910478|ref|NP_664746.1| putative ClpP protease ATP-dependent protease proteolytic subunit -
           phage associated [Streptococcus pyogenes MGAS315]
 gi|28876226|ref|NP_795465.1| putative ClpP protease ATP-dependent protease proteolytic subunit
           [Streptococcus pyogenes phage 315.2]
 gi|28895825|ref|NP_802175.1| ClpP-like protease [Streptococcus pyogenes SSI-1]
 gi|21904677|gb|AAM79549.1| putative ClpP protease ATP-dependent protease proteolytic subunit -
           phage-associated [Streptococcus pyogenes MGAS315]
 gi|28811074|dbj|BAC64008.1| putative ClpP-like protease [Streptococcus pyogenes SSI-1]
          Length = 221

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 75/157 (47%), Gaps = 3/157 (1%)

Query: 51  IEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQ 110
            + +    + A+ +  +      +I L +NS GG+VT G  IY  ++  K  ++    G 
Sbjct: 20  YDYYGMEAVSAKSIIEKLPEDNSDIVLEVNSNGGLVTVGSEIYTALRNYKGKVTAEITGM 79

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQPS-GGFSGQASDIERHAQDIVKIKRRLNEIY 169
           AAS  S+ +   +K      P A++++H+      +G + D+++ +  +    + +   Y
Sbjct: 80  AASAASVAVMGADKV--VMSPTAQMMVHKALFNWVAGNSDDLDKASNALKSSDKAIVNAY 137

Query: 170 VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           V   GK+ +E+   +  +  MSA EA + G  D+V+ 
Sbjct: 138 VAKTGKSEDEIMDLMRNETFMSAQEAVENGFADEVMT 174


>gi|329295807|ref|ZP_08253143.1| peptidase S14 ClpP [Plautia stali symbiont]
          Length = 268

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 70/159 (44%), Gaps = 8/159 (5%)

Query: 46  FVTGQIEDH--MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPI 103
            +          A  I A L  LE     K+I++ INSPGG +  G+ I++ ++     +
Sbjct: 32  TIGQDWAGEGITAKRIGAILRSLEG----KDITVNINSPGGDLFEGLTIFNQLREYAGKV 87

Query: 104 STFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKR 163
           +   +G AAS  S++  +G++       +A +++H   G   G   D    A+ +     
Sbjct: 88  TVKILGLAASAASIIAMSGDEIQ--IGRSAFLMIHNTWGMAVGNRHDFADIAEKMTPFDF 145

Query: 164 RLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
            + ++YV   G   + V   +D +  ++  EA + G  D
Sbjct: 146 AMRDVYVARTGMDEKTVTAMMDNETWINGGEAVEKGFAD 184


>gi|330963905|gb|EGH64165.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 381

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 70/164 (42%), Gaps = 9/164 (5%)

Query: 45  VFVTGQIEDH--MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           +++ G+I      A      L  ++  +    I +  N+ GG +  G+AI++ +  +   
Sbjct: 40  IYIYGEIGGWGITANQFIQDLKAID--DGVSPIVVAFNTIGGDLFDGLAIHNALNRLGER 97

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIK 162
            +      AAS GS+      +       NA +++H P    +G A D+ + A  + +  
Sbjct: 98  CTARIDALAASAGSVAACGAHR--MVMASNAMLMIHNPWTYTAGDAEDLRKVADVLDQTL 155

Query: 163 RRLNEIYVKNCGKTYEEVE--KTLDRDHIMSASEACDWGVVDKV 204
             +   Y        +EVE  + ++ +  ++A EA   G+ D++
Sbjct: 156 EAIIAAYKAKS-PDIDEVELRRMVNAETWLTAPEALALGLADEI 198


>gi|325914991|ref|ZP_08177323.1| protease subunit of ATP-dependent protease [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325538884|gb|EGD10548.1| protease subunit of ATP-dependent protease [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 233

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 5/169 (2%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLE--AENPQKEISLYINSPGGVVTAGMAI 92
           I +R      V + G I D + +   + L   E   +     I + INS GGVV  G+AI
Sbjct: 19  IEARANDVAEVMIYGTIGDSLWSESVSALELAEQINQITASTIHVRINSGGGVVADGIAI 78

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIE 152
           Y+ +         F  GQAAS+ SL+  AG + + +A   + +++H P    +G AS   
Sbjct: 79  YNALSQHAAHKVVFVDGQAASIASLIAMAGNEVVMYAS--SLLMVHAPHTIAAGNASSFR 136

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD-RDHIMSASEACDWGV 200
           ++A  +      + E Y    GK  E  +   D  DH  + ++A ++G 
Sbjct: 137 QYATALDAHAGAMLEAYATKTGKRSEVEQLLTDGADHWYTGAQAVEFGF 185


>gi|259908701|ref|YP_002649057.1| ATP-dependent Clp protease proteolytic subunit [Erwinia pyrifoliae
           Ep1/96]
 gi|224964323|emb|CAX55832.1| ATP-dependent Clp protease proteolytic subunit [Erwinia pyrifoliae
           Ep1/96]
          Length = 282

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 77/162 (47%), Gaps = 8/162 (4%)

Query: 47  VTGQIEDH--MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
           +     D    A+ I A L  +  E    ++++ INSPGG +  G+AIY+ ++  +  ++
Sbjct: 50  IGADWYDEGVTASRIAAALRSIGGE----DVTVNINSPGGDMFEGLAIYNLLREYEGKVT 105

Query: 105 TFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRR 164
              +G AAS  S++  AG++        A +++H       G   ++ + A ++    R 
Sbjct: 106 VKVLGLAASAASIIAMAGDEVQ--IGRAAFLMIHNCWTFAMGNRHEMAKIAAELEPFDRA 163

Query: 165 LNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           +N+IY    G     +E  ++ +  +  SE+ + G  D++L 
Sbjct: 164 MNDIYGARTGLDAATIETMMNAETYIGGSESVEKGFADRLLT 205


>gi|54302965|ref|YP_132958.1| hypothetical protein PBPRB1287 [Photobacterium profundum SS9]
 gi|46916393|emb|CAG23158.1| hypothetical ClpP family serine protease, possible phage related
           [Photobacterium profundum SS9]
          Length = 270

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 59/144 (40%), Gaps = 2/144 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K I L INSPGG V A   +   ++  K  ++    G AAS  S L   G++        
Sbjct: 75  KNIHLRINSPGGSVFAARTMEQALREHKATVTVHIDGLAASAASFLAMVGDEI--IIGEG 132

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A +++H+      G A D+   A  + K+   L + Y K  G         +  +   +A
Sbjct: 133 AMMMIHKAWTVSWGNADDLLAEATLLEKLDGTLAKTYAKRAGGDESTFADYMRNETWFTA 192

Query: 193 SEACDWGVVDKVLMSRIDIEEKSK 216
            EA   G+ D +  +    +++  
Sbjct: 193 EEAVTAGLADTIYDAEPAPKKEDN 216


>gi|257469574|ref|ZP_05633666.1| putative Clp protease [Fusobacterium ulcerans ATCC 49185]
 gi|317063812|ref|ZP_07928297.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313689488|gb|EFS26323.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 252

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 76/166 (45%), Gaps = 12/166 (7%)

Query: 41  KERIVFVTGQIEDHMATLICA--QLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           K  ++       D  A       ++  L  E   KE+ +YINS GG V AG+AIY+ ++ 
Sbjct: 27  KAELLIYGDIESDKWADSDVTPKEIKDLLDEANGKELDIYINSGGGSVFAGIAIYNMLKR 86

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
                + +  G AAS  S +  AG+        NA +++H+      G  +D+    + +
Sbjct: 87  YSGVKTVYVDGLAASAASFIAMAGDTI--IVPKNAYLMIHRAMTIAFGNINDMHSAIELL 144

Query: 159 VKIKRRLNEIYVKNCGKTY-EEVEK-----TLDRDHIMSASEACDW 198
            K    + +IY++   K   E++EK      +D++  ++ +EA  +
Sbjct: 145 EKTDNTIADIYMEK--KAENEDIEKETFINLMDKETWLTGTEAVKY 188


>gi|227534657|ref|ZP_03964706.1| ClpP family protease [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|227187704|gb|EEI67771.1| ClpP family protease [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
          Length = 228

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 60/131 (45%), Gaps = 2/131 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
            +++L I S GG V     I + ++  +  ++   +  A S  +++     K      P 
Sbjct: 41  SDVTLEIASDGGEVDPATEICNALRSYRGNVTAKIVSNAYSAATIVAMGANKVQ--MAPG 98

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A++++H+ S   SG + +++  +  +      +  IY    GK  ++    +D++  + A
Sbjct: 99  AKMMIHRASSDASGNSREMDAASGMLKTTDSAIANIYGAKTGKPADDFLALMDKETWLDA 158

Query: 193 SEACDWGVVDK 203
            +A + G+ D+
Sbjct: 159 DQAVELGLADE 169


>gi|56479550|ref|YP_161139.1| hypothetical protein ebA7261 [Aromatoleum aromaticum EbN1]
 gi|56315593|emb|CAI10238.1| similar to Fels-1 prophage protease subunits of ATP-dependent
           protease [Aromatoleum aromaticum EbN1]
          Length = 421

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 76/168 (45%), Gaps = 7/168 (4%)

Query: 41  KERIVFVTGQIEDHMATLICAQL-LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           +   + V G+I D        Q+   L       +I++ I S GG +  G+A+++ ++  
Sbjct: 72  RSATIAVRGKIGDWWEGKSIEQIDYDLANIGAVDQITVRITSFGGKLDHGLAMHNALRRH 131

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIERHAQDI 158
              I T   G AAS GS++  AG++   +A  N+ +++H  +     G   ++E      
Sbjct: 132 PARIITVVEGVAASAGSIVAMAGDEIHMYA--NSTMMVHGVTLRDDEGN--EVEDD-DAT 186

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             +   + E Y    GKT +EV   +  D  M+A EA   G  D+V+ 
Sbjct: 187 RALNASIVETYSARTGKTADEVAALIATDTWMTAREALAAGFADRVIE 234


>gi|317128807|ref|YP_004095089.1| peptidase S14 ClpP [Bacillus cellulosilyticus DSM 2522]
 gi|315473755|gb|ADU30358.1| peptidase S14 ClpP [Bacillus cellulosilyticus DSM 2522]
          Length = 243

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 79/159 (49%), Gaps = 7/159 (4%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP-- 102
           +      +   + ++  ++  L   +  K+I+LY+NS GG V +G+++ + ++  +    
Sbjct: 22  IVSDTDWKWDDSDVMPKEIRELLDNHVGKKINLYVNSGGGSVFSGLSMLNMLKRAREKGS 81

Query: 103 -ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKI 161
            I+ +  G A S+ S+L+    K   +   N+ I++H+   G  G A+D  + A+D+ KI
Sbjct: 82  YITAYVDGLAGSIASVLIFGANKI--YCPSNSYIMIHRAWTGMYGNATDFLKMAEDLEKI 139

Query: 162 KRRLNEIYVKNC--GKTYEEVEKTLDRDHIMSASEACDW 198
              +   Y  N   G   E +++ +D++  ++  +A  +
Sbjct: 140 DEGILNTYKDNLREGVDIETIKEMVDKETWLTGEDASKY 178


>gi|229006052|ref|ZP_04163740.1| Clp protease [Bacillus mycoides Rock1-4]
 gi|228755128|gb|EEM04485.1| Clp protease [Bacillus mycoides Rock1-4]
          Length = 221

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 72/163 (44%), Gaps = 6/163 (3%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPI 103
            +      +   ++ +  QL  + A    K I++++NS GG V   +AI + ++     I
Sbjct: 4   TISAYSWYDGISSSKVREQLKNITA----KTINVHVNSGGGDVFESIAISNLLKNHSAQI 59

Query: 104 STFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKR 163
                G AAS  S++  A +K       N  +++H+     +G A D+ + A  + KI  
Sbjct: 60  VIHIDGLAASGASVIAMAADKI--IMPKNTMMMIHRAWTYAAGNAEDLRKVADRLDKIDT 117

Query: 164 RLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
            + E Y         E+E+ L  +  ++A E   +G  D+++ 
Sbjct: 118 AVTESYTSRFVGERNELEELLAEETWLTAEECKTFGFCDEIVD 160


>gi|90411695|ref|ZP_01219704.1| hypothetical ClpP family serine protease, possible phage related
           [Photobacterium profundum 3TCK]
 gi|90327257|gb|EAS43621.1| hypothetical ClpP family serine protease, possible phage related
           [Photobacterium profundum 3TCK]
          Length = 261

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 2/142 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K I L INSPGG V A   +   ++  K  ++    G AAS  S L  AG++        
Sbjct: 70  KNIHLRINSPGGSVFAARTMEQALREHKATVTVHIDGLAASAASFLAMAGDEI--IIGEG 127

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A +++H+      G A D+   A  + K+   L + Y K  G   +     +  +   +A
Sbjct: 128 AMMMIHKAWTVSWGNADDLLAEAALLEKLDGTLAKTYAKRAGGDEKTFSDYMRNETWFTA 187

Query: 193 SEACDWGVVDKVLMSRIDIEEK 214
            EA   G+ D V  +    +++
Sbjct: 188 DEAVAAGIADTVYDAEPAPKKE 209


>gi|217964655|ref|YP_002350333.1| Clp protease domain protein [Listeria monocytogenes HCC23]
 gi|217333925|gb|ACK39719.1| Clp protease domain protein [Listeria monocytogenes HCC23]
 gi|307570780|emb|CAR83959.1| clpP protease family protein [Listeria monocytogenes L99]
          Length = 238

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 2/170 (1%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPI 103
           I+    +    M  +       +      + + + INS GG V AG  IY T++     +
Sbjct: 9   IISSNQKWIYDMLDMESTSPRDIILPENNEPVDVIINSGGGDVYAGSEIYTTLKGYNGTV 68

Query: 104 STFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKR 163
           +   +G AAS  S++  AG+K      P A+I++H  + G  G   D+E  A+       
Sbjct: 69  NVQVVGIAASAASVIAMAGDKVE--ISPTAQIMVHNVASGVFGDYRDLEHEAKVSKGFNV 126

Query: 164 RLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
            +   Y+   GK  +E+   +      +A +A + G  D+V+ S     +
Sbjct: 127 SVANAYMDKTGKNMDELLNLMGETTWFNAQQAVEAGFADEVMFSNEKAPQ 176


>gi|222107095|ref|YP_002547886.1| ClpP-type protease [Agrobacterium vitis S4]
 gi|221738274|gb|ACM39170.1| ClpP-type protease [Agrobacterium vitis S4]
          Length = 284

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 73/178 (41%), Gaps = 11/178 (6%)

Query: 27  NRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVV 86
             GE    I+  + ++   +  G      A     Q+         KE+ + +NSPGG +
Sbjct: 39  ATGENIISIFDVIGED--YWSGGGFTAKRAAAALRQI-------GNKEVIVQVNSPGGDM 89

Query: 87  TAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG 146
             G+AIY+ ++     ++   +G AAS  S++  A ++        + +++H   G   G
Sbjct: 90  FEGIAIYNMLRAHPGKVTVNVLGWAASAASIIAMAADEI--VMGLGSFMMVHNAWGAVIG 147

Query: 147 QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
              D+             L +IY    G   +++   +D +  MS S+A   G  D+V
Sbjct: 148 NQHDLRTATDLFAGFDSALADIYEARTGAKRKDIVALMDAETFMSPSDAVKNGFADRV 205


>gi|322832526|ref|YP_004212553.1| peptidase S14 ClpP [Rahnella sp. Y9602]
 gi|321167727|gb|ADW73426.1| peptidase S14 ClpP [Rahnella sp. Y9602]
          Length = 282

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 73/152 (48%), Gaps = 6/152 (3%)

Query: 55  MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASM 114
            A  I   L  +  E    ++++ INSPGG +  G+AIY+ ++     ++   +G AAS 
Sbjct: 60  TANRIAGALRSMNGE----DVTVSINSPGGDMFEGLAIYNQLREYSGKVTVKVLGIAASA 115

Query: 115 GSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCG 174
            S++  AG++        A +++H       G   D+ R AQD+    R + +IY    G
Sbjct: 116 ASIIAMAGDEVQ--IGRGAFLMIHNCWVYAVGNRHDLARAAQDMEPFDRAMQDIYSARSG 173

Query: 175 KTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
               +V + +D +  +  ++A + G  D++L 
Sbjct: 174 LDASDVSEMMDNETYIGGNDAVEKGFADRLLS 205


>gi|224501839|ref|ZP_03670146.1| Clp protease domain protein [Listeria monocytogenes FSL R2-561]
          Length = 238

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 2/170 (1%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPI 103
           I+    +    M  +       +      + + + INS GG V AG  IY T++     +
Sbjct: 9   IISSNQKWIYDMLDMESTSPRDIILPENNEPVDVIINSGGGDVYAGSEIYTTLKGYNGTV 68

Query: 104 STFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKR 163
           +   +G AAS  S++  AG+K      P A+I++H  + G  G   D+E  A+       
Sbjct: 69  NVQVVGIAASAASVIAMAGDKVE--ISPTAQIMVHNVASGVFGDYRDLEHEAKVSKGFNV 126

Query: 164 RLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
            +   Y+   GK  +E+   +      +A +A + G  D+V+ S     +
Sbjct: 127 SVANAYMDKTGKNMDELLNLMGETTWFNAQQAVEAGFADEVMFSNEKAPQ 176


>gi|254991945|ref|ZP_05274135.1| Clp protease domain protein [Listeria monocytogenes FSL J2-064]
          Length = 238

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 2/144 (1%)

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
              + I + INS GG V AG  IY T++     ++   +G AAS  S++  AG+K     
Sbjct: 35  ENNEPIDVIINSGGGDVYAGSEIYTTLKGYNGTVNVKVVGIAASAASVIAMAGDKVE--I 92

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
            P A+I++H  + G  G   D+E  A+        +   Y+   GK  +E+   +     
Sbjct: 93  SPTAQIMVHNVASGVFGDYRDLEHEAKVSKGFNVSVANAYMDKTGKNMDELLNLMGETTW 152

Query: 190 MSASEACDWGVVDKVLMSRIDIEE 213
            +A +A + G  D+V+ S     +
Sbjct: 153 FNAQQAVEAGFADEVMFSNEKAPQ 176


>gi|313156843|gb|EFR56283.1| endopeptidase Clp [Alistipes sp. HGB5]
          Length = 293

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 4/141 (2%)

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           AE    E+ + I S GG V   + I+D +  +   I+T C G  AS  +++  A   G R
Sbjct: 51  AEIDAPEVVVNIRSTGGDVNDALLIHDALTALDAHITTRCYGYTASAATIIAQAASPGCR 110

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
               NA  L+H       G A+++      + +   R+  +Y    G+   E E  +  +
Sbjct: 111 EISANALYLIHTAVCATEGNAAELSGKLDLLRQTDTRIAAVYAARSGRPAAEFETLMAEN 170

Query: 188 ----HIMSASEACDWGVVDKV 204
                 +S  EA   G+ D V
Sbjct: 171 NGSGRWLSPEEAVAAGLADVV 191


>gi|319892557|ref|YP_004149432.1| Prophage Clp protease-like protein [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162253|gb|ADV05796.1| Prophage Clp protease-like protein [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 240

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 66/142 (46%), Gaps = 2/142 (1%)

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
            + +       +++I + INS GG V +G  IY  ++  +  +     G AAS  S++  
Sbjct: 28  PKDVIDALPKNKEDIEVIINSGGGDVFSGSEIYTALKEYQGKVIVKVYGVAASAASVVAM 87

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG+       P A++++H  S    G   ++   ++ +    + +   YVK  G + EE+
Sbjct: 88  AGDHIE--MSPTAQMMIHNASTLAYGDNRNMNSASKMLSSTDKGIANAYVKKTGMSEEEI 145

Query: 181 EKTLDRDHIMSASEACDWGVVD 202
              ++ +  M+A EA + G  D
Sbjct: 146 LNLMNDETWMNAQEAVEKGFAD 167


>gi|237738073|ref|ZP_04568554.1| ATP-dependent endopeptidase clp proteolytic subunit clpP
           [Fusobacterium mortiferum ATCC 9817]
 gi|229419953|gb|EEO35000.1| ATP-dependent endopeptidase clp proteolytic subunit clpP
           [Fusobacterium mortiferum ATCC 9817]
          Length = 257

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 72/150 (48%), Gaps = 5/150 (3%)

Query: 52  EDHMATLICA-QLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQ 110
           +      +   ++  L      K+++++INS GG V AG+AIY  ++  +     +  G 
Sbjct: 46  DKWWGDEVTPTEIKELLDTVKNKDLNIFINSSGGNVFAGLAIYHMLKRHEGKKKVYVDGV 105

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYV 170
           AAS+ S++  AG++       NA +++H+     +G  +D+      + K+   + +IY 
Sbjct: 106 AASIASIIAMAGDEI--HIPKNAYLMIHRSWICTAGNKNDLLETISMLEKMDINMADIYK 163

Query: 171 KN--CGKTYEEVEKTLDRDHIMSASEACDW 198
                  + E++ + +D +  ++  EA ++
Sbjct: 164 TKALTDISNEKILELMDNETWLTGIEAQNY 193


>gi|237803423|ref|ZP_04591008.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331025405|gb|EGI05461.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 381

 Score = 99.2 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 67/163 (41%), Gaps = 7/163 (4%)

Query: 45  VFVTGQIEDH--MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           +++ G+I      A      L  ++  +    I    N+ GG +  G+AI++ +  +   
Sbjct: 40  IYIYGEIGGWGITANQFIQDLKAID--DGVSPIIAAFNTIGGDLFDGLAIHNALNRLGER 97

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIK 162
            +      AAS GS+      +       NA +++H P    +G A D+ + A  + +  
Sbjct: 98  CTARIDALAASAGSVAACGAHR--MVMASNAMLMIHNPWTYTAGDAEDLRKVADVLDQTL 155

Query: 163 RRLNEIYVKNC-GKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             +   Y          E+ + ++ +  ++A EA   G+ D++
Sbjct: 156 EAIIAAYKAKSPNIDEVELRRMVNAETWLTAPEALALGLADEI 198


>gi|296085707|emb|CBI29506.3| unnamed protein product [Vitis vinifera]
          Length = 159

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/132 (36%), Positives = 77/132 (58%), Gaps = 9/132 (6%)

Query: 88  AGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ-------- 139
           + +AI    +++K PI T C+G A    +LLL+AG KG R ALP++ I++ Q        
Sbjct: 26  SELAIIFCSRYVKSPIFTLCIGNAWGEAALLLAAGAKGNRSALPSSTIVIKQSCPPINLH 85

Query: 140 PSGGFSGQASDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           P   F GQA+DI+  A+ ++  +K  L ++Y K  GK+ E++E  + R    S S A ++
Sbjct: 86  PIARFQGQATDIDHLARKEVKNVKAELVKLYAKPMGKSPEQIEADIRRPKYFSPSGAVEY 145

Query: 199 GVVDKVLMSRID 210
           G++DKVL + I 
Sbjct: 146 GIIDKVLYNEIK 157


>gi|210621038|ref|ZP_03292423.1| hypothetical protein CLOHIR_00366 [Clostridium hiranonis DSM 13275]
 gi|210155022|gb|EEA86028.1| hypothetical protein CLOHIR_00366 [Clostridium hiranonis DSM 13275]
          Length = 244

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 73/134 (54%), Gaps = 7/134 (5%)

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
              K++ ++INS GG V AG+ IY+ ++  K   + +  G AAS+ S++  AG++     
Sbjct: 56  CEDKDLEIHINSGGGSVFAGITIYNMLKNFKGHKTVYVDGLAASIASVIALAGDEV--VM 113

Query: 130 LPNARILLHQPSGGFSGQ---ASDIERHAQDIVKIKRRLNEIYVKNCGK--TYEEVEKTL 184
              + +++H+PS     Q   A +++  ++ + K++  + +IY +N       EE+E  +
Sbjct: 114 RTGSSMMIHKPSVYIYNQSLNADELKGMSETLDKLQECIMQIYRENLKDKSKLEEIETMV 173

Query: 185 DRDHIMSASEACDW 198
           + +  M++ EA D+
Sbjct: 174 NAETWMTSEEAMDY 187


>gi|189501545|ref|YP_001957262.1| peptidase S14 ClpP [Candidatus Amoebophilus asiaticus 5a2]
 gi|189496986|gb|ACE05533.1| peptidase S14 ClpP [Candidatus Amoebophilus asiaticus 5a2]
          Length = 455

 Score = 98.8 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 8/178 (4%)

Query: 40  LKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI-NSPGGVVTAGMAIYDTMQF 98
           L +R V + G +    A  I  ++ +   ++  K I + I NSPGG   AG+ I   MQ 
Sbjct: 220 LSDRAVSLDGVVTSWKANYITDRIKYFNNKDKTKPIFIVIENSPGGSALAGLHIVQAMQN 279

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
            + P+       AASM +L+ +  +K   +A PNA +L HQP     G   +++   + +
Sbjct: 280 SQAPVYVVLKTFAASMAALITTLAKK--SYAYPNAILLHHQPWSFTGGNLRELKEEIEFM 337

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTL----DRDHIMS-ASEACDWGVVDKVLMSRIDI 211
            ++ +RL     K  G + ++++K L     R      A  A     VD V+ +  D 
Sbjct: 338 KELWKRLGGQVAKKMGISLDKLDKQLYEKASRGDWTEFADNAKKIKWVDHVITNINDT 395


>gi|28870573|ref|NP_793192.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28853821|gb|AAO56887.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 381

 Score = 98.8 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 69/164 (42%), Gaps = 9/164 (5%)

Query: 45  VFVTGQIEDH--MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           +++ G+I      A      L  ++  +    I    N+ GG +  G+AI++ +  +   
Sbjct: 40  IYIYGEIGGWGITANQFIQDLKAID--DGVSPIVAAFNTIGGDLFDGLAIHNALNRLGER 97

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIK 162
            +      AAS GS+      +       NA +++H P    +G A D+ + A  + +  
Sbjct: 98  CTARIDALAASAGSVAACGAHR--MVMASNAMLMIHNPWTYTAGDAEDLRKVADVLDQTL 155

Query: 163 RRLNEIYVKNCGKTYEEVE--KTLDRDHIMSASEACDWGVVDKV 204
             +   Y        +EVE  + ++ +  ++A EA   G+ D++
Sbjct: 156 EAIIAAYKAKS-PDIDEVELRRMVNAETWLTAPEALALGLADEI 198


>gi|126464072|ref|YP_001045185.1| peptidase S14, ClpP [Rhodobacter sphaeroides ATCC 17029]
 gi|126105883|gb|ABN78413.1| peptidase S14, ClpP [Rhodobacter sphaeroides ATCC 17029]
          Length = 279

 Score = 98.8 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 71/146 (48%), Gaps = 3/146 (2%)

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            +++ + INSPGG    G+AIY+ ++     ++   +G AAS  S++  AG++ +R A  
Sbjct: 73  DRDVVVNINSPGGDFFEGLAIYNALREHPAKVTVRVLGVAASAASVIAMAGDE-IRIARA 131

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
              +++H      +G    +   AQ +        +IY    G   +++   LDR+  +S
Sbjct: 132 -GFLMIHNTWVLAAGDRHALTEVAQWLEPFDAVSADIYAARSGIDAKKIAAMLDRETWIS 190

Query: 192 ASEACDWGVVDKVLMS-RIDIEEKSK 216
             +A + G  D +L +  +D+ +  +
Sbjct: 191 GGQAVEQGFADGLLSADELDLSDADE 216


>gi|213968226|ref|ZP_03396370.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
           syringae pv. tomato T1]
 gi|301385994|ref|ZP_07234412.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
           syringae pv. tomato Max13]
 gi|302058876|ref|ZP_07250417.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
           syringae pv. tomato K40]
 gi|213926864|gb|EEB60415.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
           syringae pv. tomato T1]
          Length = 383

 Score = 98.8 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 69/164 (42%), Gaps = 9/164 (5%)

Query: 45  VFVTGQIEDH--MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           +++ G+I      A      L  ++  +    I    N+ GG +  G+AI++ +  +   
Sbjct: 40  IYIYGEIGGWGITANQFIQDLKAID--DGVSPIVAAFNTIGGDLFDGLAIHNALNRLGER 97

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIK 162
            +      AAS GS+      +       NA +++H P    +G A D+ + A  + +  
Sbjct: 98  CTARIDALAASAGSVAACGAHR--MVMASNAMLMIHNPWTYTAGDAEDLRKVADVLDQTL 155

Query: 163 RRLNEIYVKNCGKTYEEVE--KTLDRDHIMSASEACDWGVVDKV 204
             +   Y        +EVE  + ++ +  ++A EA   G+ D++
Sbjct: 156 EAIIAAYKAKS-PDIDEVELRRMVNAETWLTAPEALALGLADEI 198


>gi|77462616|ref|YP_352120.1| putative ClpP-like protease [Rhodobacter sphaeroides 2.4.1]
 gi|77387034|gb|ABA78219.1| putative ClpP-like protease [Rhodobacter sphaeroides 2.4.1]
          Length = 279

 Score = 98.8 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 71/146 (48%), Gaps = 3/146 (2%)

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            +++ + INSPGG    G+AIY+ ++     ++   +G AAS  S++  AG++ +R A  
Sbjct: 73  DRDVVVNINSPGGDFFEGLAIYNALREHPAKVTVRVLGVAASAASVIAMAGDE-IRIARA 131

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
              +++H      +G    +   AQ +        +IY    G   +++   LDR+  +S
Sbjct: 132 -GFLMIHNTWVLAAGDRHALTEVAQWLEPFDAVSADIYAARSGIDAKKISAMLDRETWIS 190

Query: 192 ASEACDWGVVDKVLMS-RIDIEEKSK 216
             +A + G  D +L +  +D+ +  +
Sbjct: 191 GGQAVEQGFADGLLSADELDLSDADE 216


>gi|289423867|ref|ZP_06425660.1| serine protease [Peptostreptococcus anaerobius 653-L]
 gi|289155644|gb|EFD04316.1| serine protease [Peptostreptococcus anaerobius 653-L]
          Length = 248

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 69/159 (43%), Gaps = 5/159 (3%)

Query: 48  TGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFC 107
                + M     + +  + +E   K +++YINS GG + AG+AI + ++          
Sbjct: 26  GWSWGEDM-DTYPSDIRDMLSEANNKTVNVYINSGGGDLFAGIAIANMLKRHNASTKAII 84

Query: 108 MGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNE 167
            G A S  S++    +        NA +++H+PS   SG A D ++ A  +  ++  +  
Sbjct: 85  DGLAGSAASIIAFGCDTIE--MPENAYLMIHKPSSWCSGNADDFKKMADTLDTLQEGIVN 142

Query: 168 IYVKNC--GKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            Y+     G   E +   ++ +  ++   A D+  VD V
Sbjct: 143 TYMAKVVEGVDSETINSMINNETWLTGKSAKDYFKVDIV 181


>gi|156933216|ref|YP_001437132.1| hypothetical protein ESA_01027 [Cronobacter sakazakii ATCC BAA-894]
 gi|156531470|gb|ABU76296.1| hypothetical protein ESA_01027 [Cronobacter sakazakii ATCC BAA-894]
          Length = 284

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 73/152 (48%), Gaps = 6/152 (3%)

Query: 55  MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASM 114
            A+ I   L  L       ++++ INSPGG +  G+AIY+ ++     ++   +G AAS 
Sbjct: 60  TASRIAGALRSLNGA----DVTVNINSPGGDMFEGLAIYNLLREYDGKVTVKVLGLAASA 115

Query: 115 GSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCG 174
            S++  AG++        A +++H       G   D+ + A D+    + +++IY    G
Sbjct: 116 ASIIAMAGDEVQ--IGRGAFLMIHNCWVYAMGNRHDLAQIAADMAPFDKAMSDIYQARSG 173

Query: 175 KTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
              E V++ +D +  +  SEA + G  D +L 
Sbjct: 174 LDAETVDRMMDGETYIGGSEAVEKGFADSLLS 205


>gi|331017560|gb|EGH97616.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 335

 Score = 98.4 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 69/164 (42%), Gaps = 9/164 (5%)

Query: 45  VFVTGQIEDH--MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           +++ G+I      A      L  ++  +    I    N+ GG +  G+AI++ +  +   
Sbjct: 40  IYIYGEIGGWGITANQFIQDLKAID--DGVSPIVAAFNTIGGDLFDGLAIHNALNRLGER 97

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIK 162
            +      AAS GS+      +       NA +++H P    +G A D+ + A  + +  
Sbjct: 98  CTARIDALAASAGSVAACGAHR--MVMASNAMLMIHNPWTYTAGDAEDLRKVADVLDQTL 155

Query: 163 RRLNEIYVKNCGKTYEEVE--KTLDRDHIMSASEACDWGVVDKV 204
             +   Y        +EVE  + ++ +  ++A EA   G+ D++
Sbjct: 156 EAIIAAYKAKS-PDIDEVELRRMVNAETWLTAPEALALGLADEI 198


>gi|257884250|ref|ZP_05663903.1| ClpP protease [Enterococcus faecium 1,231,501]
 gi|257820088|gb|EEV47236.1| ClpP protease [Enterococcus faecium 1,231,501]
          Length = 235

 Score = 98.4 bits (244), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 64/143 (44%), Gaps = 2/143 (1%)

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
              + + + INS GG V AG  IY  ++  +  ++   +G AAS  S++  AG       
Sbjct: 36  ENNEPLEVVINSGGGDVYAGSEIYTALRAYQGDVTVKIVGIAASAASVIAMAGNTIE--I 93

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
            P A+I++H  S   +G    +   A+ +      +   Y+   G    E+ + ++ +  
Sbjct: 94  SPTAQIMIHNVSSAAAGDHRTLAHEAEVLKNYNSSIANAYIAKTGIEEAELLELMNHETW 153

Query: 190 MSASEACDWGVVDKVLMSRIDIE 212
           ++A +A + G  DKV+    +  
Sbjct: 154 LTAEQAVENGFADKVMFENNEAP 176


>gi|296085762|emb|CBI29573.3| unnamed protein product [Vitis vinifera]
          Length = 91

 Score = 98.4 bits (244), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 49/79 (62%)

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++ QP   F GQA+DI+   +++  +K  L ++Y K+ GK+ EE+E  + R    S SEA
Sbjct: 1   MIKQPIARFQGQATDIDLARKEVKNVKAELVKLYAKHIGKSPEEIEADIRRPKYFSPSEA 60

Query: 196 CDWGVVDKVLMSRIDIEEK 214
            ++G++DKVL +    E++
Sbjct: 61  VEYGIIDKVLYNERSSEDR 79


>gi|284801601|ref|YP_003413466.1| hypothetical protein LM5578_1354 [Listeria monocytogenes 08-5578]
 gi|284994743|ref|YP_003416511.1| hypothetical protein LM5923_1307 [Listeria monocytogenes 08-5923]
 gi|284057163|gb|ADB68104.1| hypothetical protein LM5578_1354 [Listeria monocytogenes 08-5578]
 gi|284060210|gb|ADB71149.1| hypothetical protein LM5923_1307 [Listeria monocytogenes 08-5923]
          Length = 238

 Score = 98.0 bits (243), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 2/144 (1%)

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
              + I + INS GG V AG  IY T++     ++   +G AAS  S++  AG+K     
Sbjct: 35  ENNESIDVIINSGGGDVYAGSEIYTTLKGYNGTVNVKVVGIAASAASVIAMAGDKVE--I 92

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
            P A+I++H  + G  G   D+E  A+        +   Y+   GK  +E+   +     
Sbjct: 93  SPTAQIMVHNVASGVFGDYRDLEHEAKVSKGFNVSVANAYMDKTGKNMDELLNLMGETTW 152

Query: 190 MSASEACDWGVVDKVLMSRIDIEE 213
            +A +A + G  D+V+ S     +
Sbjct: 153 FNAQQAVEAGFADEVMFSNEKAPQ 176


>gi|50914353|ref|YP_060325.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes MGAS10394]
 gi|50903427|gb|AAT87142.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes MGAS10394]
          Length = 221

 Score = 98.0 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 8/157 (5%)

Query: 51  IEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQ 110
           +E   A  I  +L          +I L +NS GG+VT G  IY  ++  K  ++    G 
Sbjct: 25  MEAASAKSIIEKL-----PEDNSDIILEVNSNGGLVTVGSEIYTALRNYKGKVTAEITGM 79

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQPS-GGFSGQASDIERHAQDIVKIKRRLNEIY 169
           AAS  S+ +   +K      P A++++H+ S    +G + D+++ +  +    + +   Y
Sbjct: 80  AASAASVAVMGVDKV--VMSPTAQMMVHKASFNWVAGNSDDLDKASNALKSSDKAIVNAY 137

Query: 170 VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           V   G   +E+ + +  +  MSA +A + G  D+V+ 
Sbjct: 138 VAKTGLPEDEIMELMKNETFMSAQDAVEKGFADEVMS 174


>gi|293369840|ref|ZP_06616413.1| Clp protease [Bacteroides ovatus SD CMC 3f]
 gi|292635017|gb|EFF53536.1| Clp protease [Bacteroides ovatus SD CMC 3f]
          Length = 353

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 8/135 (5%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP- 131
           K++ +YINSPGG       I + ++     I+       AS  + +         F++P 
Sbjct: 43  KDVHIYINSPGGECFEANEIVNVIKRFPGKITGEGGALVASAATYIAINCT---SFSMPA 99

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKR-RLNEIYVKNCGKTYEEVEKTLDR-DHI 189
           N   ++HQ SGG  G+ +DIE   + + K+    LN    K   K  ++++   D  D+ 
Sbjct: 100 NGLFMIHQVSGGACGKVADIESTLEVMRKLNEHYLNAFLSKCTDK--KKIKDAWDNGDYW 157

Query: 190 MSASEACDWGVVDKV 204
           MSA EA + G V +V
Sbjct: 158 MSAQEAKENGFVTEV 172


>gi|9632942|ref|NP_049970.1| Predicted clp-protease [Streptococcus phage Sfi21]
 gi|5230830|gb|AAD41032.1|AF112470_7 clp-protease [Streptococcus phage Sfi21]
 gi|5524037|gb|AAD44089.1|AF115103_5 orf221 gp [Streptococcus phage Sfi21]
          Length = 224

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 2/145 (1%)

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           A +  +EI+L I S GG V A   IY  ++     I     G AAS  S++  A +    
Sbjct: 40  ANDEGEEITLNIASNGGDVFAASEIYTMLKSCGKRIVANVQGLAASAASVISMAADTVR- 98

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
              P A +++H+ S G  G + D+E  +  +  I   +   Y    G    E+   + ++
Sbjct: 99  -ISPTAHMMIHKASSGLVGNSDDMEHQSVVLNSIDESIALAYEMKTGLKQTELLDLMAKE 157

Query: 188 HIMSASEACDWGVVDKVLMSRIDIE 212
             ++A  A D G  D+++    D E
Sbjct: 158 TWLNAKTAVDKGFADEIMFFGNDEE 182


>gi|26989764|ref|NP_745189.1| ClpP protease, putative [Pseudomonas putida KT2440]
 gi|24984659|gb|AAN68653.1|AE016495_5 ClpP protease, putative [Pseudomonas putida KT2440]
          Length = 387

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 72/163 (44%), Gaps = 7/163 (4%)

Query: 45  VFVTGQIEDH--MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           V+V G+I      A      L  ++  +    I +  N+ GG +  G+AI++ +  +   
Sbjct: 42  VYVYGEIGAWGITANQFIQDLKAID--DGTSPIVVAFNTNGGDLFEGLAIHNALSRLGER 99

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIK 162
            +      AAS GS+ +    + +  +  NA +++H P     G A D+ R A  + +  
Sbjct: 100 CTGRVDALAASAGSVAVCGAHRVVMAS--NAMLMIHNPYTWVGGDAEDLRRVADVLDQAF 157

Query: 163 RRLNEIY-VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             +   Y  K       E+ + ++ +  ++ASEA   G+ D+V
Sbjct: 158 EAMIAAYKAKAPNIDDAELRRLVNAESWLTASEAVALGLADEV 200


>gi|282917312|ref|ZP_06325067.1| Clp protease [Staphylococcus aureus subsp. aureus D139]
 gi|282318939|gb|EFB49294.1| Clp protease [Staphylococcus aureus subsp. aureus D139]
          Length = 245

 Score = 97.2 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/146 (27%), Positives = 72/146 (49%), Gaps = 2/146 (1%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
              C + +  + E   +++ + INS GG + AG  IY  ++  K  ++      AAS  S
Sbjct: 24  DSTCPKDVLTQLEFSDEDVDIIINSNGGNLVAGSEIYTHLRAHKGKVNVRITAIAASAAS 83

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
           L+  AG+       P AR+++H PS    G+A D+   A+ +  + + + E Y    GK 
Sbjct: 84  LIAMAGDHIE--MSPVARMMIHNPSSIAQGEAKDLNHAAETLEHVGQIMAEAYAVRAGKN 141

Query: 177 YEEVEKTLDRDHIMSASEACDWGVVD 202
            +E+ + + R+  ++A EA + G  D
Sbjct: 142 KQELVEMMARETWLNADEAIEQGFAD 167


>gi|290891498|ref|ZP_06554556.1| hypothetical protein AWRIB429_1946 [Oenococcus oeni AWRIB429]
 gi|290478847|gb|EFD87513.1| hypothetical protein AWRIB429_1946 [Oenococcus oeni AWRIB429]
          Length = 256

 Score = 97.2 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 4/141 (2%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L +    ++I L INS GG V+A   IY  ++  +  ++ F  G AAS  S++  AG+K 
Sbjct: 40  LNSAASGEDIQLNINSNGGDVSAASTIYSMLKAYQGKVNVFIQGMAASAASVIAMAGDKV 99

Query: 126 MRFALPNARILLHQPSGGFSG--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
                P A++++H+   G S    +  + + A     +   +   Y+   G    ++ + 
Sbjct: 100 --SMSPTAQLMIHKCLAGVSDPLNSDQLRQIAAQNDSVDLGIANAYMAKTGMNQSDLLQL 157

Query: 184 LDRDHIMSASEACDWGVVDKV 204
           +     M A  A D G VD+V
Sbjct: 158 MSNQTFMDAKTAADKGFVDEV 178


>gi|258429955|ref|ZP_05688325.1| conserved hypothetical protein [Staphylococcus aureus A9299]
 gi|257849549|gb|EEV73517.1| conserved hypothetical protein [Staphylococcus aureus A9299]
          Length = 245

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/146 (27%), Positives = 72/146 (49%), Gaps = 2/146 (1%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
              C + +  + E   +++ + INS GG + AG  IY  ++  K  ++      AAS  S
Sbjct: 24  DSTCPKDVLTQLEFSDEDVDIIINSNGGNLVAGSEIYTHLRAHKGKVNVRITAIAASAAS 83

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
           L+  AG+       P AR+++H PS    G+A D+   A+ +  + + + E Y    GK 
Sbjct: 84  LIAMAGDHIE--MSPVARMMIHNPSSIAQGEAKDLNHAAETLEHVGQIMAEAYAVRAGKN 141

Query: 177 YEEVEKTLDRDHIMSASEACDWGVVD 202
            +E+ + + R+  ++A EA + G  D
Sbjct: 142 KQELVEMMARETWLNADEAIEQGFAD 167


>gi|221140568|ref|ZP_03565061.1| endopeptidase ClpP [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|257136405|ref|YP_003169679.1| protease/scaffold protein [Staphylococcus phage P954]
 gi|258450637|ref|ZP_05698698.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|282909284|ref|ZP_06317100.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|283958726|ref|ZP_06376172.1| putative Clp protease [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|284025012|ref|ZP_06379410.1| phi77 ORF015-like protein, putative protease [Staphylococcus aureus
           subsp. aureus 132]
 gi|256681247|gb|ACV04990.1| protease/scaffold protein [Staphylococcus phage P954]
 gi|257861637|gb|EEV84437.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|269941434|emb|CBI49831.1| putative Clp protease [Staphylococcus aureus subsp. aureus TW20]
 gi|282326852|gb|EFB57149.1| ATP-dependent Clp protease, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|283789766|gb|EFC28588.1| putative Clp protease [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|302333628|gb|ADL23821.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus JKD6159]
 gi|329314644|gb|AEB89057.1| S14 family endopeptidase ClpP [Staphylococcus aureus subsp. aureus
           T0131]
          Length = 245

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/146 (27%), Positives = 72/146 (49%), Gaps = 2/146 (1%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
              C + +  + E   +++ + INS GG + AG  IY  ++  K  ++      AAS  S
Sbjct: 24  DSTCPKDVLTQLEFSDEDVDIIINSNGGNLVAGSEIYTHLRAHKGKVNVRITAIAASAAS 83

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
           L+  AG+       P AR+++H PS    G+A D+   A+ +  + + + E Y    GK 
Sbjct: 84  LIAMAGDHIE--MSPVARMMIHNPSSIAQGEAKDLNHAAETLEHVGQIMAEAYAVRAGKN 141

Query: 177 YEEVEKTLDRDHIMSASEACDWGVVD 202
            +E+ + + R+  ++A EA + G  D
Sbjct: 142 KQELVEMMARETWLNADEAIEQGFAD 167


>gi|15924954|ref|NP_372488.1| phiN315 scaffolding protein-like protein [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|15927540|ref|NP_375073.1| hypothetical protein SA1775 [Staphylococcus aureus subsp. aureus
           N315]
 gi|30043952|ref|NP_835555.1| hypothetical protein, similar to scaffolding protein
           [Staphylococcus phage phiN315]
 gi|49484207|ref|YP_041431.1| Clp protease [Staphylococcus aureus subsp. aureus MRSA252]
 gi|87162394|ref|YP_494590.1| phi77 ORF015-like protein, putative protease [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|118725094|ref|YP_908830.1| putative Clp protease [Staphylococcus phage phiNM3]
 gi|151222109|ref|YP_001332931.1| phage Clp-like protease [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|156980281|ref|YP_001442540.1| hypothetical protein SAHV_1950 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161510188|ref|YP_001575847.1| endopeptidase ClpP [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253316780|ref|ZP_04839993.1| phi77 ORF015-like protein, putative protease [Staphylococcus aureus
           subsp. aureus str. CF-Marseille]
 gi|255006752|ref|ZP_05145353.2| phi77 ORF015-like protein, putative protease [Staphylococcus aureus
           subsp. aureus Mu50-omega]
 gi|257426118|ref|ZP_05602534.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428771|ref|ZP_05605166.1| endopeptidase ClpP [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257431384|ref|ZP_05607758.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257434097|ref|ZP_05610448.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257437005|ref|ZP_05613046.1| endopeptidase ClpP [Staphylococcus aureus subsp. aureus M876]
 gi|258413640|ref|ZP_05681914.1| conserved hypothetical protein [Staphylococcus aureus A9763]
 gi|258423045|ref|ZP_05685944.1| conserved hypothetical protein [Staphylococcus aureus A9635]
 gi|258447952|ref|ZP_05696086.1| conserved hypothetical protein [Staphylococcus aureus A6224]
 gi|282914818|ref|ZP_06322600.1| putative Clp protease [Staphylococcus aureus subsp. aureus M899]
 gi|282925262|ref|ZP_06332920.1| Clp protease [Staphylococcus aureus subsp. aureus C101]
 gi|282928145|ref|ZP_06335752.1| Clp protease [Staphylococcus aureus A10102]
 gi|283771122|ref|ZP_06344013.1| endopeptidase ClpP [Staphylococcus aureus subsp. aureus H19]
 gi|293507840|ref|ZP_06667682.1| Clp protease [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510803|ref|ZP_06669504.1| endopeptidase ClpP [Staphylococcus aureus subsp. aureus M809]
 gi|293545403|ref|ZP_06672080.1| putative Clp protease [Staphylococcus aureus subsp. aureus M1015]
 gi|294849516|ref|ZP_06790258.1| Clp protease [Staphylococcus aureus A9754]
 gi|295428547|ref|ZP_06821174.1| Clp protease [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296276195|ref|ZP_06858702.1| phi77 ORF015-like protein, putative protease [Staphylococcus aureus
           subsp. aureus MR1]
 gi|13701759|dbj|BAB43052.1| SA1775 [Staphylococcus aureus subsp. aureus N315]
 gi|14247737|dbj|BAB58126.1| phiN315 scaffolding protein-like protein [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|49242336|emb|CAG41046.1| putative Clp protease [Staphylococcus aureus subsp. aureus MRSA252]
 gi|87128368|gb|ABD22882.1| phi77 ORF015-like protein, putative protease [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|104641859|gb|ABF73201.1| putative Clp protease [Staphylococcus phage phiNM3]
 gi|150374909|dbj|BAF68169.1| phage Clp-like protease [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|156722416|dbj|BAF78833.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|160368997|gb|ABX29968.1| S14 family endopeptidase ClpP [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|257271026|gb|EEV03195.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274415|gb|EEV05927.1| endopeptidase ClpP [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257277830|gb|EEV08494.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281023|gb|EEV11167.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257283599|gb|EEV13725.1| endopeptidase ClpP [Staphylococcus aureus subsp. aureus M876]
 gi|257839593|gb|EEV64063.1| conserved hypothetical protein [Staphylococcus aureus A9763]
 gi|257846832|gb|EEV70847.1| conserved hypothetical protein [Staphylococcus aureus A9635]
 gi|257858884|gb|EEV81753.1| conserved hypothetical protein [Staphylococcus aureus A6224]
 gi|282313050|gb|EFB43449.1| Clp protease [Staphylococcus aureus subsp. aureus C101]
 gi|282321313|gb|EFB51642.1| putative Clp protease [Staphylococcus aureus subsp. aureus M899]
 gi|282590209|gb|EFB95290.1| Clp protease [Staphylococcus aureus A10102]
 gi|283459716|gb|EFC06807.1| endopeptidase ClpP [Staphylococcus aureus subsp. aureus H19]
 gi|285817650|gb|ADC38137.1| Prophage Clp protease-like protein [Staphylococcus aureus 04-02981]
 gi|290919816|gb|EFD96887.1| putative Clp protease [Staphylococcus aureus subsp. aureus M1015]
 gi|291094903|gb|EFE25171.1| Clp protease [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466376|gb|EFF08901.1| endopeptidase ClpP [Staphylococcus aureus subsp. aureus M809]
 gi|294823653|gb|EFG40080.1| Clp protease [Staphylococcus aureus A9754]
 gi|295127529|gb|EFG57168.1| Clp protease [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|312830339|emb|CBX35181.1| clp protease family protein [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315196577|gb|EFU26925.1| S14 family endopeptidase ClpP [Staphylococcus aureus subsp. aureus
           CGS01]
          Length = 245

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/146 (27%), Positives = 72/146 (49%), Gaps = 2/146 (1%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
              C + +  + E   +++ + INS GG + AG  IY  ++  K  ++      AAS  S
Sbjct: 24  DSTCPKDVLTQLEFSDEDVDIIINSNGGNLVAGSEIYTHLRAHKGKVNVRITAIAASAAS 83

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
           L+  AG+       P AR+++H PS    G+A D+   A+ +  + + + E Y    GK 
Sbjct: 84  LIAMAGDHIE--MSPVARMMIHNPSSIAQGEAKDLNHAAETLEHVGQIMAEAYAVRAGKN 141

Query: 177 YEEVEKTLDRDHIMSASEACDWGVVD 202
            +E+ + + R+  ++A EA + G  D
Sbjct: 142 KQELVEMMARETWLNADEAIEQGFAD 167


>gi|254244966|ref|ZP_04938288.1| hypothetical protein PA2G_05845 [Pseudomonas aeruginosa 2192]
 gi|126198344|gb|EAZ62407.1| hypothetical protein PA2G_05845 [Pseudomonas aeruginosa 2192]
          Length = 390

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 70/164 (42%), Gaps = 7/164 (4%)

Query: 45  VFVTGQIEDH--MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           +++ G+I      +      L  ++  +    + ++ ++ GG +  G+AI++ ++ +   
Sbjct: 62  IYIYGEIGFWGITSADFIRDLKAVD--DGTSPVLVHFDTIGGDLFDGIAIHNALRALGER 119

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIK 162
            +    G   S GS+      +       NA  ++H P    +G + D+ + A  + +  
Sbjct: 120 CTARIDGACFSAGSVAACGAHRVE--MADNALFMIHNPWTLAAGDSEDLRKVADMMDQAF 177

Query: 163 RRLNEIYVKNC-GKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
             +   Y          E+ + +D +  ++A EA D G VD+VL
Sbjct: 178 EGIVASYQHRTLNVDDAELRRMIDDETWLTAPEAKDKGFVDEVL 221


>gi|302751864|gb|ADL66041.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
           aureus subsp. aureus str. JKD6008]
          Length = 243

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/146 (27%), Positives = 72/146 (49%), Gaps = 2/146 (1%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
              C + +  + E   +++ + INS GG + AG  IY  ++  K  ++      AAS  S
Sbjct: 22  DSTCPKDVLTQLEFSDEDVDIIINSNGGNLVAGSEIYTHLRAHKGKVNVRITAIAASAAS 81

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
           L+  AG+       P AR+++H PS    G+A D+   A+ +  + + + E Y    GK 
Sbjct: 82  LIAMAGDHIE--MSPVARMMIHNPSSIAQGEAKDLNHAAETLEHVGQIMAEAYAVRAGKN 139

Query: 177 YEEVEKTLDRDHIMSASEACDWGVVD 202
            +E+ + + R+  ++A EA + G  D
Sbjct: 140 KQELVEMMARETWLNADEAIEQGFAD 165


>gi|314940339|ref|ZP_07847503.1| Clp protease [Enterococcus faecium TX0133a04]
 gi|314942078|ref|ZP_07848935.1| Clp protease [Enterococcus faecium TX0133C]
 gi|314949459|ref|ZP_07852797.1| Clp protease [Enterococcus faecium TX0082]
 gi|314953607|ref|ZP_07856504.1| Clp protease [Enterococcus faecium TX0133A]
 gi|314994363|ref|ZP_07859655.1| Clp protease [Enterococcus faecium TX0133B]
 gi|314997914|ref|ZP_07862814.1| Clp protease [Enterococcus faecium TX0133a01]
 gi|313588077|gb|EFR66922.1| Clp protease [Enterococcus faecium TX0133a01]
 gi|313591228|gb|EFR70073.1| Clp protease [Enterococcus faecium TX0133B]
 gi|313594379|gb|EFR73224.1| Clp protease [Enterococcus faecium TX0133A]
 gi|313599143|gb|EFR77988.1| Clp protease [Enterococcus faecium TX0133C]
 gi|313640458|gb|EFS05038.1| Clp protease [Enterococcus faecium TX0133a04]
 gi|313644157|gb|EFS08737.1| Clp protease [Enterococcus faecium TX0082]
          Length = 225

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 76/151 (50%), Gaps = 2/151 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L++   Q+EI + INS GG V  G+AI + ++  K  ++    G AAS  S++  AG+  
Sbjct: 40  LDSLGDQEEIEVVINSNGGDVFQGIAIGNLLKSNKAKVNVVINGLAASAASIIAMAGDTI 99

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
             +   NA++++H+ S    G   D    A  +  I + +   Y      T E +++ L+
Sbjct: 100 KIY--NNAQLMIHRASTYGEGNVDDFRTIADQLESIDKSVKASYKTRFNGTDEALQELLE 157

Query: 186 RDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           ++  M A  A  +G+VD+++ +      ++K
Sbjct: 158 KESFMDAETALSYGLVDEIIDAENSSGTEAK 188


>gi|282904631|ref|ZP_06312506.1| putative Clp protease [Staphylococcus aureus subsp. aureus C160]
 gi|282594880|gb|EFB99856.1| putative Clp protease [Staphylococcus aureus subsp. aureus C160]
          Length = 245

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/146 (27%), Positives = 72/146 (49%), Gaps = 2/146 (1%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
              C + +  + E   +++ + INS GG + AG  IY  ++  K  ++      AAS  S
Sbjct: 24  DSTCPKDVLTQLEFSDEDVDIIINSNGGNLVAGSEIYTHLRAHKGKVNVRITAIAASAAS 83

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
           L+  AG+       P AR+++H PS    G+A D+   A+ +  + + + E Y    GK 
Sbjct: 84  LIAMAGDHIE--MSPVARMMIHNPSSIAQGEAKDLNHAAETLEHVGQIMAEAYAVRAGKN 141

Query: 177 YEEVEKTLDRDHIMSASEACDWGVVD 202
            +E+ + + R+  ++A EA + G  D
Sbjct: 142 KQELVEMMARETWLNADEAIEQGFAD 167


>gi|260597538|ref|YP_003210109.1| hypothetical protein CTU_17460 [Cronobacter turicensis z3032]
 gi|260216715|emb|CBA30102.1| hypothetical protein CTU_17460 [Cronobacter turicensis z3032]
          Length = 284

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 6/152 (3%)

Query: 55  MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASM 114
            A+ I   L  L       ++++ INSPGG +  G+AIY+ ++     ++   +G AAS 
Sbjct: 60  TASRIAGALRSLNGA----DVTVNINSPGGDMFEGLAIYNLLREYDGKVTVKVLGLAASA 115

Query: 115 GSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCG 174
            S++  AG++        A +++H       G   D+ + A D+    + ++ IY    G
Sbjct: 116 ASIIAMAGDEVQ--IGRGAFLMIHNCWVCAMGNRHDLAQIATDMAPFDKAMSGIYQARSG 173

Query: 175 KTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
                V+K +D +  +  SEA + G  D +L 
Sbjct: 174 LDASTVDKMMDSETYIGGSEAVEKGFADSLLS 205


>gi|304379157|ref|ZP_07361902.1| S14 family endopeptidase ClpP [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|304342272|gb|EFM08166.1| S14 family endopeptidase ClpP [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
          Length = 247

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/146 (27%), Positives = 72/146 (49%), Gaps = 2/146 (1%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
              C + +  + E   +++ + INS GG + AG  IY  ++  K  ++      AAS  S
Sbjct: 26  DSTCPKDVLTQLEFSDEDVDIIINSNGGNLVAGSEIYTHLRAHKGKVNVRITAIAASAAS 85

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
           L+  AG+       P AR+++H PS    G+A D+   A+ +  + + + E Y    GK 
Sbjct: 86  LIAMAGDHIE--MSPVARMMIHNPSSIAQGEAKDLNHAAETLEHVGQIMAEAYAVRAGKN 143

Query: 177 YEEVEKTLDRDHIMSASEACDWGVVD 202
            +E+ + + R+  ++A EA + G  D
Sbjct: 144 KQELVEMMARETWLNADEAIEQGFAD 169


>gi|253734912|ref|ZP_04869077.1| S14 family endopeptidase ClpP [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|297589979|ref|ZP_06948619.1| S14 family endopeptidase ClpP [Staphylococcus aureus subsp. aureus
           MN8]
 gi|253727094|gb|EES95823.1| S14 family endopeptidase ClpP [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|297577107|gb|EFH95821.1| S14 family endopeptidase ClpP [Staphylococcus aureus subsp. aureus
           MN8]
 gi|320142431|gb|EFW34245.1| Clp protease [Staphylococcus aureus subsp. aureus MRSA177]
          Length = 247

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/146 (27%), Positives = 72/146 (49%), Gaps = 2/146 (1%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
              C + +  + E   +++ + INS GG + AG  IY  ++  K  ++      AAS  S
Sbjct: 26  DSTCPKDVLTQLEFSDEDVDIIINSNGGNLVAGSEIYTHLRAHKGKVNVRITAIAASAAS 85

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
           L+  AG+       P AR+++H PS    G+A D+   A+ +  + + + E Y    GK 
Sbjct: 86  LIAMAGDHIE--MSPVARMMIHNPSSIAQGEAKDLNHAAETLEHVGQIMAEAYAVRAGKN 143

Query: 177 YEEVEKTLDRDHIMSASEACDWGVVD 202
            +E+ + + R+  ++A EA + G  D
Sbjct: 144 KQELVEMMARETWLNADEAIEQGFAD 169


>gi|70726774|ref|YP_253688.1| hypothetical protein SH1773 [Staphylococcus haemolyticus JCSC1435]
 gi|68447498|dbj|BAE05082.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 288

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/178 (24%), Positives = 87/178 (48%), Gaps = 5/178 (2%)

Query: 41  KERIVFVTGQIED--HMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
            + I+ ++G I +   +   I A+ +    +N +++I + +NS GG V  G+ IY+ ++ 
Sbjct: 20  NKHILTLSGTIANLSFLDDTISAKAVKDSLDNVKEDIVIRLNSGGGDVFEGIEIYNYLKS 79

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           +   I+      AAS  SL+  AG+K        A +++H+ S    G  SDI++    +
Sbjct: 80  LSNHITIEVTALAASAASLVAMAGDKI--IIRTGANMMVHEASTMAFGNKSDIQKTLNAL 137

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
             I   + +IY    G   +E+   +  +  ++A EA + G  D+   SR  ++++ +
Sbjct: 138 TAIDTSIVDIYHDRTGLDRDEIVNLITNETWLTADEAINKGFADE-KSSRKSVDKQKE 194


>gi|327393420|dbj|BAK10842.1| putative peptidase S14 ClpP [Pantoea ananatis AJ13355]
          Length = 282

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 69/133 (51%), Gaps = 2/133 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           ++++ INSPGG +  G+AIY+ ++  +  ++   +G AAS  S++  AG+         A
Sbjct: 75  DVTVNINSPGGDMFEGLAIYNLLREYEGKVTVKVLGLAASAASIIAMAGDDIQ--IGRGA 132

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H       G   D+ + A D+    + + +IY    G + E++ + +D +  +  S
Sbjct: 133 FLMIHNCWVYAMGNRHDLSQIAADMEPFDKAMGDIYSYRSGLSAEDIAEMMDGETYIGGS 192

Query: 194 EACDWGVVDKVLM 206
           +A D G  D++L 
Sbjct: 193 DAVDKGFADRLLS 205


>gi|253729750|ref|ZP_04863915.1| S14 family endopeptidase ClpP [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253726485|gb|EES95214.1| S14 family endopeptidase ClpP [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 247

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/146 (27%), Positives = 72/146 (49%), Gaps = 2/146 (1%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
              C + +  + E   +++ + INS GG + AG  IY  ++  K  ++      AAS  S
Sbjct: 26  DSTCPKDVLTQLEFSDEDVDIIINSNGGNLVAGSEIYTHLRAHKGKVNVRITAIAASAAS 85

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
           L+  AG+       P AR+++H PS    G+A D+   A+ +  + + + E Y    GK 
Sbjct: 86  LIAMAGDHIE--MSPVARMMIHNPSSIAQGEAKDLNHAAETLEHVGQIMAEAYAVRAGKN 143

Query: 177 YEEVEKTLDRDHIMSASEACDWGVVD 202
            +E+ + + R+  ++A EA + G  D
Sbjct: 144 KQELVEMMARETWLNADEAIEQGFAD 169


>gi|69244669|ref|ZP_00602933.1| Peptidase S14, ClpP [Enterococcus faecium DO]
 gi|258615840|ref|ZP_05713610.1| peptidase S14 ClpP [Enterococcus faecium DO]
 gi|293560412|ref|ZP_06676904.1| Clp protease [Enterococcus faecium E1162]
 gi|294616024|ref|ZP_06695848.1| Clp protease [Enterococcus faecium E1636]
 gi|68196260|gb|EAN10689.1| Peptidase S14, ClpP [Enterococcus faecium DO]
 gi|291591104|gb|EFF22789.1| Clp protease [Enterococcus faecium E1636]
 gi|291605560|gb|EFF35002.1| Clp protease [Enterococcus faecium E1162]
          Length = 228

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 76/151 (50%), Gaps = 2/151 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L++   Q+EI + INS GG V  G+AI + ++  K  ++    G AAS  S++  AG+  
Sbjct: 43  LDSLGDQEEIEVVINSNGGDVFQGIAIGNLLKSNKAKVNVVINGLAASAASIIAMAGDTI 102

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
             +   NA++++H+ S    G   D    A  +  I + +   Y      T E +++ L+
Sbjct: 103 KIY--NNAQLMIHRASTYGEGNVDDFRTIADQLESIDKSVKASYKTRFNGTDEALQELLE 160

Query: 186 RDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           ++  M A  A  +G+VD+++ +      ++K
Sbjct: 161 KESFMDAETALSYGLVDEIIDAENSSGTEAK 191


>gi|304395848|ref|ZP_07377730.1| peptidase S14 ClpP [Pantoea sp. aB]
 gi|304356217|gb|EFM20582.1| peptidase S14 ClpP [Pantoea sp. aB]
          Length = 282

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 69/133 (51%), Gaps = 2/133 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           ++++ INSPGG +  G+AIY+ ++  +  ++   +G AAS  S++  AG+         A
Sbjct: 75  DVTVNINSPGGDMFEGLAIYNLLREYEGKVTVKVLGLAASAASIIAMAGDDIQ--IGRGA 132

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H       G   D+E+ A D+    + + +IY    G +  +V K +D +  +  S
Sbjct: 133 FLMIHNCWVYAMGNRHDLEQIAADMEPFDKAMGDIYSHRSGLSTGDVAKMMDSETYIGGS 192

Query: 194 EACDWGVVDKVLM 206
           +A D G  D++L 
Sbjct: 193 DAVDKGFADRLLS 205


>gi|298387203|ref|ZP_06996756.1| ATP-dependent Clp protease [Bacteroides sp. 1_1_14]
 gi|298259872|gb|EFI02743.1| ATP-dependent Clp protease [Bacteroides sp. 1_1_14]
          Length = 353

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 8/135 (5%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP- 131
           K++ +YINSPGG       I + ++     I+       AS  + +         F++P 
Sbjct: 43  KDVHIYINSPGGECFEANEIVNVIKKFPGKITGEGGALVASAATYIAINCT---SFSMPA 99

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKR-RLNEIYVKNCGKTYEEVEKTLDR-DHI 189
           N   ++HQ SGG  G+ +DIE   + + K+    LN    K   K  +++    ++ D+ 
Sbjct: 100 NGLFMIHQVSGGACGRVADIESTLEVMRKLNEHYLNAFLSKCTDK--KKIRDAWEKGDYW 157

Query: 190 MSASEACDWGVVDKV 204
           MSA EA + G V +V
Sbjct: 158 MSAQEAKENGFVTEV 172


>gi|257881814|ref|ZP_05661467.1| peptidase S14 [Enterococcus faecium 1,231,502]
 gi|257891949|ref|ZP_05671602.1| peptidase S14 [Enterococcus faecium 1,231,410]
 gi|260562287|ref|ZP_05832801.1| peptidase S14 [Enterococcus faecium C68]
 gi|257817472|gb|EEV44800.1| peptidase S14 [Enterococcus faecium 1,231,502]
 gi|257828309|gb|EEV54935.1| peptidase S14 [Enterococcus faecium 1,231,410]
 gi|260073211|gb|EEW61552.1| peptidase S14 [Enterococcus faecium C68]
          Length = 231

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 76/151 (50%), Gaps = 2/151 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L++   Q+EI + INS GG V  G+AI + ++  K  ++    G AAS  S++  AG+  
Sbjct: 46  LDSLGDQEEIEVVINSNGGDVFQGIAIGNLLKSNKAKVNVVINGLAASAASIIAMAGDTI 105

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
             +   NA++++H+ S    G   D    A  +  I + +   Y      T E +++ L+
Sbjct: 106 KIY--NNAQLMIHRASTYGEGNVDDFRTIADQLESIDKSVKASYKTRFNGTDEALQELLE 163

Query: 186 RDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           ++  M A  A  +G+VD+++ +      ++K
Sbjct: 164 KESFMDAETALSYGLVDEIIDAENSSGTEAK 194


>gi|313891822|ref|ZP_07825427.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP-like
           protein [Dialister microaerophilus UPII 345-E]
 gi|313119816|gb|EFR43003.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP-like
           protein [Dialister microaerophilus UPII 345-E]
          Length = 249

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 69/128 (53%), Gaps = 4/128 (3%)

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           +K I++YINS GG V AG+AI + ++  K   +    G   S+ + +  + ++  R    
Sbjct: 49  EKPITVYINSDGGSVPAGVAIANMLKRHKAKTTAVIDGWCCSIATQIFFSCQE--RQIPK 106

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIY--VKNCGKTYEEVEKTLDRDHI 189
           NA +++H+PS    G A+++ + A+ +  I++ L E+Y        T E++ K ++++  
Sbjct: 107 NAYLMIHKPSCTTVGDANELRKTAEALDTIQKGLEEVYRAAAKEHITDEDITKYVNQESW 166

Query: 190 MSASEACD 197
            +  EA +
Sbjct: 167 FTGEEASE 174


>gi|329954258|ref|ZP_08295352.1| endopeptidase Clp [Bacteroides clarus YIT 12056]
 gi|328527964|gb|EGF54950.1| endopeptidase Clp [Bacteroides clarus YIT 12056]
          Length = 438

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 3/140 (2%)

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           +     I + I+S GG    G AIYD ++     IS   +G+ ASM +++L +     R 
Sbjct: 101 DPADPTIDIEIHSCGGDTVEGYAIYDALRASGKEISCTVVGRCASMATIILLSAPLERRK 160

Query: 129 ALPNARILLHQPSGGFSGQASD---IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
           A P+A+ L+H+P         D   IE     +   K ++  +YV+  G     +E  ++
Sbjct: 161 AYPHAKFLIHKPYLAKYDDVLDLETIETLKSSLETEKAKMLAVYVERTGTEPNVLETQMN 220

Query: 186 RDHIMSASEACDWGVVDKVL 205
           ++       A   G +  VL
Sbjct: 221 KETWFGGEVAKQLGFISAVL 240


>gi|261209692|ref|ZP_05924019.1| peptidase S14 [Enterococcus faecium TC 6]
 gi|289566819|ref|ZP_06447230.1| peptidase S14 [Enterococcus faecium D344SRF]
 gi|260076352|gb|EEW64152.1| peptidase S14 [Enterococcus faecium TC 6]
 gi|289161396|gb|EFD09285.1| peptidase S14 [Enterococcus faecium D344SRF]
          Length = 231

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 41/151 (27%), Positives = 76/151 (50%), Gaps = 2/151 (1%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L++   Q+EI + INS GG V  G+AI + ++  K  I+    G AAS  S++  AG+  
Sbjct: 46  LDSLGDQEEIEVVINSNGGDVFQGIAIGNLLKSNKAKINVVINGLAASAASIIAMAGDTV 105

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
             +   NA++++H+ S    G   D    A  +  I + +   Y      T E +++ L+
Sbjct: 106 KIY--NNAQLMIHRASTYGEGNVDDFRTIADQLESIDKSVKASYKTRFNGTDEALQELLE 163

Query: 186 RDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           ++  M A  A  +G+VD+++ +      ++K
Sbjct: 164 KESFMDAETALSYGLVDEIIDAENSTGTEAK 194


>gi|191637887|ref|YP_001987053.1| Clp protease domain protein [Lactobacillus casei BL23]
 gi|190712189|emb|CAQ66195.1| Clp protease domain protein [Lactobacillus casei BL23]
 gi|327381956|gb|AEA53432.1| ClpP protease [Lactobacillus casei LC2W]
          Length = 235

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 2/141 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           ++S+ INS GG+V AG  IY  ++  K P++   +G A S  SL+  AG+  +    P  
Sbjct: 44  DLSVEINSGGGIVDAGSEIYTMLRAYKGPVNVNVVGVAYSAASLIAMAGD--VVAMSPAG 101

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H  SGG  G   D+E  A  + K    +   Y+   G +  E+   +D  + +   
Sbjct: 102 MMMIHNVSGGQMGDYHDMENAADLLKKSNTAIANAYMAKTGLSQAEILDLMDSTYWLDPQ 161

Query: 194 EACDWGVVDKVLMSRIDIEEK 214
            A + G  DK++    +   K
Sbjct: 162 TAIEKGFADKMMFDNAEKPGK 182


>gi|239631128|ref|ZP_04674159.1| phage protein [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|239525593|gb|EEQ64594.1| phage protein [Lactobacillus paracasei subsp. paracasei 8700:2]
          Length = 232

 Score = 95.3 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 2/141 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           ++S+ INS GG+V AG  IY  ++  K P++   +G A S  SL+  AG+  +    P  
Sbjct: 41  DLSVEINSGGGIVDAGSEIYTMLRAYKGPVNVNVVGVAYSAASLIAMAGD--VVAMSPAG 98

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H  SGG  G   D+E  A  + K    +   Y+   G +  E+   +D  + +   
Sbjct: 99  MMMIHNVSGGQMGDYHDMENAADLLKKSNTAMANAYMAKTGLSQTEILDLMDSTYWLDPQ 158

Query: 194 EACDWGVVDKVLMSRIDIEEK 214
            A + G  DK++    +   K
Sbjct: 159 TAIEKGFADKMMFDNAEKPGK 179


>gi|77999991|ref|YP_358763.1| putative protease [Lactobacillus phage Lc-Nu]
 gi|37826007|gb|AAR04628.1| putative protease [Lactobacillus phage Lc-Nu]
          Length = 228

 Score = 95.3 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 58/131 (44%), Gaps = 2/131 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
            ++ L I S GG V     + + ++  K  ++   +  A S  +++     K      P 
Sbjct: 41  SDVVLEIASDGGEVDPATEVCNALRDYKGNVTAKIVSNAYSAATIVAMGANKVQ--MAPG 98

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A++++H+ S   SG + +++  +  +      +  +Y    GK   E    +D++  + A
Sbjct: 99  AKMMIHRASSDASGNSHEMDAASGMLQTTDSAIASLYSAKTGKPANEFLALMDKETWLDA 158

Query: 193 SEACDWGVVDK 203
            +A + G+ D+
Sbjct: 159 DDAINLGLADE 169


>gi|306827690|ref|ZP_07460966.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes ATCC 10782]
 gi|304430120|gb|EFM33153.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes ATCC 10782]
          Length = 221

 Score = 95.3 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 72/157 (45%), Gaps = 8/157 (5%)

Query: 51  IEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQ 110
           +E   A  I  QL          +I L +NS GG+VT G  +Y  ++  K  ++    G 
Sbjct: 25  MEATSAKSIINQL-----PEDSSDIILEVNSNGGLVTVGSEVYTALRNYKGKVTAEITGM 79

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQPS-GGFSGQASDIERHAQDIVKIKRRLNEIY 169
           AAS  S+ +   +K      P A++++H+       G + D+++ +  +    + +   Y
Sbjct: 80  AASAASVAVMGADKV--VMSPTAQMMVHKALFNWVCGNSDDLDKASNALKSSDKAIVNAY 137

Query: 170 VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           V   G + +E+   +  +  MSA +A + G  D+V+ 
Sbjct: 138 VAKTGLSEDEIMNLMRNETFMSAQDAVEKGFADEVMS 174


>gi|124009662|ref|ZP_01694334.1| Clp protease domain protein [Microscilla marina ATCC 23134]
 gi|123984712|gb|EAY24697.1| Clp protease domain protein [Microscilla marina ATCC 23134]
          Length = 429

 Score = 94.9 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 70/142 (49%), Gaps = 10/142 (7%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKP-----PISTFCMGQAASMGSLLLSAGEKGMR 127
           + I++ INSPGG +T G++I   +  I        I T+  G A S+  L+   G+K   
Sbjct: 51  RRINVRINSPGGKITDGLSICAAILNINQSTPNVRIDTYVDGLALSIAGLIAVCGKKVGM 110

Query: 128 FALPNARILLHQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                A+++LH P   G    Q   IE+H + ++++K  L  +     G+  E++   ++
Sbjct: 111 CNF--AKLMLHNPFIGGKNGTQNGGIEQH-ETLMQVKEMLLTLLATRTGQKVEDLSLMMN 167

Query: 186 RDHIMSASEACDWGVVDKVLMS 207
           +   +SA+EA   G VD+V   
Sbjct: 168 QTTWLSAAEAKRQGFVDEVFEH 189


>gi|283478672|emb|CAY74588.1| prophage LambdaSa04, ClpP endopeptidase (S14) family, non-peptidase
           homologue, putative [Erwinia pyrifoliae DSM 12163]
          Length = 282

 Score = 94.9 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 76/162 (46%), Gaps = 8/162 (4%)

Query: 47  VTGQIEDH--MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
           +     D    A+ I A L  +  E    ++++ INSPGG +  G+AIY+ ++  +  ++
Sbjct: 50  IGADWYDEGVTASRIAAALRSIGGE----DVTVNINSPGGDMFEGLAIYNLLREYEGKVT 105

Query: 105 TFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRR 164
              +G AAS  S++  AG++        A +++H       G   ++ + A ++    R 
Sbjct: 106 VKVLGLAASAASIIAMAGDEVQ--IGRAAFLMIHNCWTFAMGNRHEMAKIAAELEPFDRA 163

Query: 165 LNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           +N+IY    G     +E  ++ +  +  SE+ +    D++L 
Sbjct: 164 MNDIYGARTGLDAATIETMMNAETYIGGSESVEKXFADRLLT 205


>gi|253570517|ref|ZP_04847925.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251839466|gb|EES67549.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 353

 Score = 94.9 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 8/135 (5%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP- 131
           K++ +YINSPGG       I + ++     I+       AS  + +         F++P 
Sbjct: 43  KDVHIYINSPGGECFEANEIVNVIKKFPGKITGEGGALVASAATYIAINCT---SFSMPA 99

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKR-RLNEIYVKNCGKTYEEVEKTLDR-DHI 189
           N   ++HQ SGG  G+ +DIE   + + K+    LN    K   K  +++    ++ D+ 
Sbjct: 100 NGLFMIHQVSGGACGRVADIESALEVMRKLNEHYLNAFLSKCTDK--KKIRDAWEKGDYW 157

Query: 190 MSASEACDWGVVDKV 204
           MSA EA + G V +V
Sbjct: 158 MSAQEAKENGFVTEV 172


>gi|167759143|ref|ZP_02431270.1| hypothetical protein CLOSCI_01490 [Clostridium scindens ATCC 35704]
 gi|167663261|gb|EDS07391.1| hypothetical protein CLOSCI_01490 [Clostridium scindens ATCC 35704]
          Length = 275

 Score = 94.9 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 80/171 (46%), Gaps = 8/171 (4%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLL--FLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           L     +              C Q +  FL   +  ++I +Y NS GG V AG+AIY+ +
Sbjct: 38  LYFYGDIVSATWESMWFEEDRCPQDIADFLNQLDGYEDIDIYFNSGGGDVFAGLAIYNQL 97

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQ 156
           +        +  G AAS+ S+++ A ++   FA   A+ ++H+P     G A D +   +
Sbjct: 98  KRYSGHKVGYVDGMAASIASVIMFACDELH-FAT-GAQAMIHKPLCMAWGNADDFKEVIK 155

Query: 157 DIVKIKRRLNEIYVKNC--GKTYEEVEKTLDRDHIMSASEACDWG--VVDK 203
            +   +  + ++Y ++   G T ++++  + ++   S +E  ++   ++D+
Sbjct: 156 QLDLCEDSILDVYEEHLKEGVTRDKIKSFMAKEKWFSGAELAEYFDVLIDE 206


>gi|19745790|ref|NP_606926.1| putative ClpP protease [Streptococcus pyogenes MGAS8232]
 gi|94988204|ref|YP_596305.1| ATP-dependent endopeptidase Clp proteolytic subunit [Streptococcus
           phage 9429.1]
 gi|94990086|ref|YP_598186.1| ATP-dependent endopeptidase Clp proteolytic subunit clpP
           [Streptococcus phage 10270.1]
 gi|94993998|ref|YP_602096.1| ATP-dependent endopeptidase clp proteolytic subunit clpP
           [Streptococcus phage 10750.1]
 gi|139474106|ref|YP_001128822.1| putative phage ClpP protease [Streptococcus pyogenes str. Manfredo]
 gi|19747933|gb|AAL97425.1| putative ClpP protease [Streptococcus pyogenes MGAS8232]
 gi|94541712|gb|ABF31761.1| ATP-dependent endopeptidase clp proteolytic subunit [Streptococcus
           phage 9429.1]
 gi|94543594|gb|ABF33642.1| ATP-dependent endopeptidase clp proteolytic subunit clpP
           [Streptococcus phage 10270.1]
 gi|94547506|gb|ABF37552.1| ATP-dependent endopeptidase clp proteolytic subunit clpP
           [Streptococcus phage 10750.1]
 gi|134272353|emb|CAM30609.1| putative phage ClpP protease [Streptococcus pyogenes str. Manfredo]
          Length = 221

 Score = 94.9 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 73/157 (46%), Gaps = 8/157 (5%)

Query: 51  IEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQ 110
           +E   A  I  QL          +I L +NS GG+VT G  +Y  ++  K  ++    G 
Sbjct: 25  MEATSAKSIINQL-----PEDSSDIILEVNSNGGLVTVGSEVYTALRNYKGKVTAEITGM 79

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQPS-GGFSGQASDIERHAQDIVKIKRRLNEIY 169
           AAS  S+ +   +K      P A++++H+      +G + D+++ +  +    + +   Y
Sbjct: 80  AASAASVAVMGADKV--VMSPTAQMMVHKALFNWVAGNSDDLDKASNALKSSDKAIVNAY 137

Query: 170 VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           V   G + +E+   +  +  MSA +A + G  D+V+ 
Sbjct: 138 VAKTGLSEDEIMNLMRNETFMSAQDAVEKGFADEVMS 174


>gi|323691287|ref|ZP_08105562.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           symbiosum WAL-14673]
 gi|323504627|gb|EGB20414.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           symbiosum WAL-14673]
          Length = 275

 Score = 94.5 bits (234), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 78/171 (45%), Gaps = 8/171 (4%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLL--FLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           L     +              C Q +  FL   +  ++I +Y NS GG V AG+AIY+ +
Sbjct: 38  LYFYGDIVSATWESMWFEEDRCPQDIADFLNQLDGYEDIDIYFNSGGGDVFAGLAIYNQL 97

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQ 156
           +        +  G AAS+ S+++ A ++        A+ ++H+P     G A D +   +
Sbjct: 98  KRYSGHKVGYVDGMAASIASVIMFACDEL--HFATGAQAMIHKPLCMAWGNADDFKEVIK 155

Query: 157 DIVKIKRRLNEIYVKNC--GKTYEEVEKTLDRDHIMSASEACDWG--VVDK 203
            +   +  + ++Y ++   G T ++++  + ++   S +E  ++   ++D+
Sbjct: 156 QLDLCEDSILDVYEEHLKEGVTRDKIKSFMAKEKWFSGAELAEYFDVLIDE 206


>gi|224143118|ref|XP_002335992.1| predicted protein [Populus trichocarpa]
 gi|222837882|gb|EEE76247.1| predicted protein [Populus trichocarpa]
          Length = 229

 Score = 94.5 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 2/122 (1%)

Query: 86  VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS 145
           +  G+AIY+ ++  +  ++   +G AAS GS++  AG+           +++H       
Sbjct: 34  MFEGLAIYNLLREHEGEVNVKVLGLAASAGSVIAMAGDTVQ--IARAGFLMIHNAWVVAM 91

Query: 146 GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           G  +D+   A  +      + +IY    G   + + K +D +  +  + A + G  D++L
Sbjct: 92  GNRNDLRELAAWLEPFDAAMGDIYASRTGLEAKAIAKLMDSESWIGGAAAVEQGFADELL 151

Query: 206 MS 207
            S
Sbjct: 152 AS 153


>gi|251781097|ref|ZP_04824017.1| serine protease [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243085412|gb|EES51302.1| serine protease [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 253

 Score = 94.5 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 73/156 (46%), Gaps = 9/156 (5%)

Query: 50  QIEDHMATLICAQLL--FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFC 107
           Q         C Q +  FL+  N    + +Y+NS GG V AG+AIY  ++      + + 
Sbjct: 44  QWGKWSDDDTCPQDIADFLKELNSFDSLDIYVNSGGGSVFAGIAIYHQLKRHNGFKTVYV 103

Query: 108 MGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG---QASDIERHAQDIVKIKRR 164
            G AAS+ S++  AG+K       +A+ ++H+P+  +      A ++ + A  +   +  
Sbjct: 104 DGIAASIASVISCAGDKV--IIPKSAQFMIHKPTASYFWTSLNADELRKEADTLDVCQDS 161

Query: 165 LNEIYVKNC--GKTYEEVEKTLDRDHIMSASEACDW 198
           +  IY++N   G T EE+   +D +   +     D+
Sbjct: 162 IRNIYMENVKEGITEEEINNLIDSETWFTGETVTDY 197


>gi|313113728|ref|ZP_07799303.1| Clp protease [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310623949|gb|EFQ07329.1| Clp protease [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 406

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 63/160 (39%), Gaps = 6/160 (3%)

Query: 52  EDHMATLICAQLL--FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMG 109
                  +  Q     L       ++++ I S GG V A  AI   ++     ++    G
Sbjct: 52  TSWWGDEVTPQAFAADLATIPAMDDLTVRICSGGGDVWAAQAIGAMLENRLGTVTAQIEG 111

Query: 110 QAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG--QASDIERHAQDIVKIKRRLNE 167
             AS  +++ S  +     A  +A  ++H      +G      +++    +  ++  +  
Sbjct: 112 ICASAATIVASHCKVVK--AAEDATYMIHPIKVNPNGFVDMEGLKQLMDALTVMRTNVLN 169

Query: 168 IYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
            Y K  G T EEV   +D     +A+EA + G +D++  S
Sbjct: 170 QYAKKTGHTVEEVAAWMDATSWWTAAEAKENGFIDEITES 209


>gi|148268438|ref|YP_001247381.1| peptidase S14, ClpP [Staphylococcus aureus subsp. aureus JH9]
 gi|150394499|ref|YP_001317174.1| peptidase S14 ClpP [Staphylococcus aureus subsp. aureus JH1]
 gi|257793350|ref|ZP_05642329.1| conserved hypothetical protein [Staphylococcus aureus A9781]
 gi|258421077|ref|ZP_05684008.1| peptidase S14 ClpP [Staphylococcus aureus A9719]
 gi|258454503|ref|ZP_05702470.1| peptidase S14 ClpP [Staphylococcus aureus A5937]
 gi|295407473|ref|ZP_06817268.1| peptidase S14 [Staphylococcus aureus A8819]
 gi|297246299|ref|ZP_06930146.1| peptidase S14 [Staphylococcus aureus A8796]
 gi|147741507|gb|ABQ49805.1| peptidase S14, ClpP [Staphylococcus aureus subsp. aureus JH9]
 gi|149946951|gb|ABR52887.1| peptidase S14 ClpP [Staphylococcus aureus subsp. aureus JH1]
 gi|257787322|gb|EEV25662.1| conserved hypothetical protein [Staphylococcus aureus A9781]
 gi|257843025|gb|EEV67443.1| peptidase S14 ClpP [Staphylococcus aureus A9719]
 gi|257863360|gb|EEV86121.1| peptidase S14 ClpP [Staphylococcus aureus A5937]
 gi|294967676|gb|EFG43710.1| peptidase S14 [Staphylococcus aureus A8819]
 gi|297176784|gb|EFH36043.1| peptidase S14 [Staphylococcus aureus A8796]
 gi|315129217|gb|EFT85211.1| peptidase S14 ClpP [Staphylococcus aureus subsp. aureus CGS03]
 gi|329728115|gb|EGG64558.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Staphylococcus aureus subsp. aureus 21172]
          Length = 245

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/146 (26%), Positives = 72/146 (49%), Gaps = 2/146 (1%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
              C + +  + E   +++ + INS GG + AG  IY  ++  K  ++      AAS  S
Sbjct: 24  DSTCPKDVLTQLEFSDEDVDIIINSNGGNLVAGSEIYTHLRAHKGKVNVRITAIAASAAS 83

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
           L+  AG+       P AR+++H PS    G+A D+   A+ +  + + + E Y    GK 
Sbjct: 84  LIAMAGDHIE--MSPVARMMIHNPSSIAQGEAKDLNHAAETLEHVGQIMAEAYAVRAGKN 141

Query: 177 YEEVEKTLDRDHIMSASEACDWGVVD 202
            +E+ + + ++  ++A EA + G  D
Sbjct: 142 KQELIEMMAKETWLNADEAIEQGFAD 167


>gi|306828094|ref|ZP_07461357.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes ATCC 10782]
 gi|304429631|gb|EFM32677.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pyogenes ATCC 10782]
          Length = 238

 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 95/197 (48%), Gaps = 13/197 (6%)

Query: 10  DSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
            ++++FL  +P  +E +++ + +  +Y          + G +      +   ++    +E
Sbjct: 1   MTKNIFLS-IPKRIEASSQADGTAKLY----------LAGTVGAWYDGITFKEVRQAMSE 49

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
                + ++INS GG +  G+AI + ++ +   +     G AAS  S++  AG+      
Sbjct: 50  ISSDTVEVHINSYGGDMFEGIAIKNYLKQLDKTVIVVIDGIAASAASVIAMAGDTIK--M 107

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
             + +I++H P    +G A ++ + A D+ K +  + E Y+ +   T +E++  LD +  
Sbjct: 108 PKDTQIMIHNPWTWAAGNAKELRKIADDLEKSQTSIEESYLAHFKGTRDELKALLDEETS 167

Query: 190 MSASEACDWGVVDKVLM 206
           ++A EA   G+ D+++ 
Sbjct: 168 LTAEEAVMLGLADELIE 184


>gi|308180862|ref|YP_003924990.1| protease subunit of ATP-dependent Clp protease [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|308046353|gb|ADN98896.1| protease subunit of ATP-dependent Clp protease [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 251

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 2/127 (1%)

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           I S GG V A   IY  ++     ++    G AAS  S++  AG+       P A+I++H
Sbjct: 57  IASNGGDVFAASEIYTMLKNYAGDVTVNIQGLAASAASVVAMAGDHIN--ISPTAQIMIH 114

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           +     +G A D+E  A  +  I + +   Y    G    ++ + +  +  ++AS+A D 
Sbjct: 115 KAWSQPAGNADDLEHEASILNGIDQSIASAYEAKTGMDQADLLQLMANETWLTASDAVDK 174

Query: 199 GVVDKVL 205
           G  D+++
Sbjct: 175 GFADEIM 181


>gi|300766684|ref|ZP_07076601.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|300495784|gb|EFK30935.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
          Length = 247

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 2/129 (1%)

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           I S GG V A   IY  ++     ++    G AAS  S++  AG+       P A+I++H
Sbjct: 58  IASNGGDVFAASEIYTMLKNYAGNVTVNIQGLAASAASVVAMAGDHIN--ISPTAQIMIH 115

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           +     +G A D+E  A  +  I + +   Y    G    ++ + +  +  ++AS+A D 
Sbjct: 116 KAWSQPAGNADDLEHEASILNGIDQSIASAYEAKTGMDQADLLQLMANETWLTASDAVDK 175

Query: 199 GVVDKVLMS 207
           G  D+++ +
Sbjct: 176 GFADEIMFT 184


>gi|239834255|ref|ZP_04682583.1| ClpP protease [Ochrobactrum intermedium LMG 3301]
 gi|239822318|gb|EEQ93887.1| ClpP protease [Ochrobactrum intermedium LMG 3301]
          Length = 291

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 8/136 (5%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
            +++ +N PGG +  G+AIY+ +      ++   MG AAS  S++  AG++        +
Sbjct: 76  PVTVNVNPPGGDMFEGLAIYNLLASHPGKVTVNVMGYAASAASIIAMAGDRV--IMSTGS 133

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD------ 187
            +++H+  G   G   D    A         + +IY    G   + V   LD        
Sbjct: 134 MMMIHRAWGLAVGNTHDFTDAATLFQSFDSSMADIYAARTGLAQDVVLSLLDGPSKASDG 193

Query: 188 HIMSASEACDWGVVDK 203
             +SA EA + G  D+
Sbjct: 194 TWLSADEAIEKGFADE 209


>gi|160700656|ref|YP_001552336.1| gp7 [Mycobacterium phage Giles]
 gi|159136606|gb|ABW88402.1| gp7 [Mycobacterium phage Giles]
          Length = 396

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 72/175 (41%), Gaps = 7/175 (4%)

Query: 45  VFVTGQIEDHMATL-ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPI 103
           +++ G I        + AQ    +       +++ +NSPGG    GMAI + +       
Sbjct: 19  IYIYGDIGQTFWDDGVSAQSFIDQLAEVSGPVNIRVNSPGGSAWDGMAIANAIIRHPAKT 78

Query: 104 STFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKR 163
           +TF  G AAS  S++  AG++ +       R +LH       G A D+   A  +  +  
Sbjct: 79  TTFIDGLAASAASIVAFAGDEVVVSKW--GRAMLHNAHAMVMGTADDMREVATQLDALNA 136

Query: 164 RLNEIYVKNC--GKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS--RIDIEEK 214
            +   Y      G   +     + ++   SA E  + G+V ++  S  R ++E+ 
Sbjct: 137 NMAAYYADRSTGGDDAKAFAAAMAKETWYSADELLEAGLVTRIDNSGVREEVEKA 191


>gi|289608536|emb|CBI60575.1| unnamed protein product [Sordaria macrospora]
          Length = 99

 Score = 93.0 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 54/90 (60%), Gaps = 9/90 (10%)

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT-------YEEVEKTLDRDH 188
           ++HQP GG  GQASDI  +A  I +I+ ++N+I   +  K+          +   ++RD 
Sbjct: 1   MVHQPLGGTRGQASDILIYANQIQRIREQINKIVQSHINKSFGFEKYDLAAISDMMERDK 60

Query: 189 IMSASEACDWGVVDKVLMSRI--DIEEKSK 216
            ++A EA + GVVD++L  R+  ++E+K+K
Sbjct: 61  YLTAEEAVELGVVDQILDRRVKDEVEKKTK 90


>gi|225870213|ref|YP_002746160.1| phage ClpP protease [Streptococcus equi subsp. equi 4047]
 gi|225699617|emb|CAW93272.1| putative phage ClpP protease [Streptococcus equi subsp. equi 4047]
          Length = 221

 Score = 93.0 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 71/157 (45%), Gaps = 8/157 (5%)

Query: 51  IEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQ 110
           +E   A  I  Q           +I L +NS GG+VT G  IY  ++  K  ++    G 
Sbjct: 25  MEAASAKSIIEQF-----PEDNSDIVLEVNSNGGLVTVGSEIYTALRNYKGKVTAEITGM 79

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQPSG-GFSGQASDIERHAQDIVKIKRRLNEIY 169
           AAS  S+ +   +K      P A++++H+      SG + D+++ +  +    + +   Y
Sbjct: 80  AASAASVAVMGADKV--VMSPTAQMMVHKALFKWVSGNSDDLDKASNALKSSDKAIVSAY 137

Query: 170 VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           V   G + + +   +  +  MSA +A + G  D+V+ 
Sbjct: 138 VAKTGLSEDAIMDLMRNETFMSAQDAVEKGFADEVMS 174


>gi|315611967|ref|ZP_07886885.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           sanguinis ATCC 49296]
 gi|315315956|gb|EFU63990.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           sanguinis ATCC 49296]
          Length = 239

 Score = 93.0 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 65/133 (48%), Gaps = 2/133 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           +++ ++INS GG V AG  IY  ++     ++   +G AAS  S++  AG+       P 
Sbjct: 39  EDVEIHINSGGGDVYAGSEIYTALRAYSGRVTVKIVGIAASAASVIAMAGDSVE--ISPT 96

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A+I++H  S G  G  + +E  A  +    + +   YV   GK   ++ + +++     A
Sbjct: 97  AQIMIHNVSSGVYGDHNALEHEAAVLKGFNKSIASAYVHKTGKALNDLLELMNQTTWFDA 156

Query: 193 SEACDWGVVDKVL 205
             A + G  DKV+
Sbjct: 157 EAAVENGFADKVM 169


>gi|293396799|ref|ZP_06641074.1| ClpP protease [Serratia odorifera DSM 4582]
 gi|291420706|gb|EFE93960.1| ClpP protease [Serratia odorifera DSM 4582]
          Length = 214

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 63/132 (47%), Gaps = 2/132 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           ++++ INSPGG +  G+AIY+ ++  +  ++   +G AAS  S++  AG+         A
Sbjct: 5   DVTVNINSPGGDMFEGLAIYNLLREYQGKVTVKVLGLAASAASIIAMAGDDIQ--IGRGA 62

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H       G   D       +      + +IY    G   E V++ +D +  +  S
Sbjct: 63  FLMIHNCWVVALGNRHDFASMVDYLEPFDNAMADIYSARSGLDSEAVKQMMDGETYIGGS 122

Query: 194 EACDWGVVDKVL 205
           +A + G+ D +L
Sbjct: 123 DAIEKGLADGLL 134


>gi|327385116|gb|AEA56590.1| ClpP protease [Lactobacillus casei BD-II]
          Length = 235

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 2/141 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           ++S+ INS GG+V AG  IY  ++  K P++   +G A S  SL+  AG+  +    P  
Sbjct: 44  DLSVEINSGGGIVDAGSEIYTMLRAYKGPVNVNVVGVAYSAASLIAMAGD--VVAMSPAG 101

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H  S G  G   D++  A  + K    +   Y+   G +  E+   +D  + +   
Sbjct: 102 MMMIHNVSSGQMGDYHDMQNAADSLKKSNIAIANAYMAKTGLSQAEILDLMDSTYWLDPQ 161

Query: 194 EACDWGVVDKVLMSRIDIEEK 214
            A + G  DK++    +   K
Sbjct: 162 TAIEKGFADKMMFDNAEKPGK 182


>gi|237795138|ref|YP_002862690.1| serine protease [Clostridium botulinum Ba4 str. 657]
 gi|229260557|gb|ACQ51590.1| serine protease [Clostridium botulinum Ba4 str. 657]
          Length = 253

 Score = 92.6 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 73/156 (46%), Gaps = 9/156 (5%)

Query: 50  QIEDHMATLICAQLL--FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFC 107
           Q         C Q +  FL+  N    + +Y+NS GG V AG+AIY+ ++      +   
Sbjct: 44  QWSKWSDDDTCPQDIADFLKELNSFDNLDIYVNSGGGSVFAGIAIYNQLKRHNGFKTVHV 103

Query: 108 MGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG---QASDIERHAQDIVKIKRR 164
            G AAS+ S++  AG+K       +A+ ++H+P+  +      A ++ + A  +   +  
Sbjct: 104 DGIAASITSVISCAGDKV--IIHKSAQFMIHKPTASYFWTSLNADELRKEADTLDICQDS 161

Query: 165 LNEIYVKNC--GKTYEEVEKTLDRDHIMSASEACDW 198
           +  IY++N   G T EE+   ++ +   +     D+
Sbjct: 162 IRNIYMENVKEGITEEEINNLINAETWFTGETVTDY 197


>gi|270265270|ref|ZP_06193531.1| hypothetical protein SOD_m00020 [Serratia odorifera 4Rx13]
 gi|270040674|gb|EFA13777.1| hypothetical protein SOD_m00020 [Serratia odorifera 4Rx13]
          Length = 284

 Score = 92.6 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 65/134 (48%), Gaps = 2/134 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           ++++ INSPGG +  G+AIY+ ++  +  ++   +G AAS  S++  AG+         A
Sbjct: 75  DVTVNINSPGGDMFEGLAIYNLLREYRGQVTVKVLGLAASAASIIAMAGDDIQ--IGRGA 132

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H       G   D     + +      + +IY    G   + V++ +D +  +  S
Sbjct: 133 FLMIHNCWVVAIGNRHDFSAMVEYLEPFDNAMADIYSARSGLDSDSVKQMMDGETYIGGS 192

Query: 194 EACDWGVVDKVLMS 207
           +A + G+ D +L S
Sbjct: 193 DAIEKGLADSLLSS 206


>gi|221127124|ref|XP_002165386.1| PREDICTED: similar to Putative ATP-dependent Clp protease
          proteolytic subunit, mitochondrial [Hydra
          magnipapillata]
          Length = 95

 Score = 92.6 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/65 (61%), Positives = 56/65 (86%)

Query: 19 VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
          VP+VVEQ+ R ER+YDIYSRLLKERIV + G I+D++++++ AQLLFL++E+ +K I +Y
Sbjct: 30 VPIVVEQSGRTERAYDIYSRLLKERIVCLFGGIDDNVSSVVVAQLLFLQSESRKKPIHMY 89

Query: 79 INSPG 83
          INSPG
Sbjct: 90 INSPG 94


>gi|237836623|ref|XP_002367609.1| ATP-dependent Clp protease proteolytic subunit, putative
           [Toxoplasma gondii ME49]
 gi|211965273|gb|EEB00469.1| ATP-dependent Clp protease proteolytic subunit, putative
           [Toxoplasma gondii ME49]
          Length = 131

 Score = 92.6 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/120 (34%), Positives = 78/120 (65%)

Query: 86  VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS 145
           V AG+A++D +  ++ P+ T  +G AAS  SLLL+AG  G RFA+  + +LLHQP+G  +
Sbjct: 2   VVAGLALFDALSTLQAPVYTVNLGLAASAASLLLAAGSGGRRFAVEQSSVLLHQPAGSLA 61

Query: 146 GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           G+ S+++   +++ K+  ++  +Y +  G+    V + +  + +++A +AC++G+VD VL
Sbjct: 62  GRDSELQDERREVEKLHEKVVRLYSEVTGRPEARVRRDIKEEKVLTAEQACEYGLVDAVL 121


>gi|320006269|gb|ADW01298.1| protease subunit of ATP-dependent Clp protease [Lactobacillus phage
           Sha1]
          Length = 245

 Score = 92.6 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 68/146 (46%), Gaps = 3/146 (2%)

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
            A +L  ++    + + + I S GG V A   IY  ++     ++    G AAS  S++ 
Sbjct: 33  VADILNDDS-GDDEALEVDIASNGGDVFAASEIYTMLKNYAGNVTINIQGLAASAASVVA 91

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
            AG+       P A+I++H+     +G A D+E  A  +  I + +   Y    G    +
Sbjct: 92  MAGDHIN--ISPTAQIMIHKAWSQPAGNADDLEHEASILNGIDQSIASAYEAKTGMDQAD 149

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVL 205
           + + +  +  ++AS+A D G  D+++
Sbjct: 150 LLQLMANETWLTASDAVDKGFADEIM 175


>gi|298694394|gb|ADI97616.1| Prophage Clp protease-like protein [Staphylococcus aureus subsp.
           aureus ED133]
          Length = 245

 Score = 92.6 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/146 (26%), Positives = 71/146 (48%), Gaps = 2/146 (1%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
              C + +  + E   +++ + INS GG + AG  IY  ++  K  ++      AAS  S
Sbjct: 24  DSTCPKDVLTQLEFSDEDVDIIINSNGGNLVAGSEIYTHLRAHKGKVNVRITAIAASAAS 83

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
           L+  AG+       P AR+++H PS    G+  D+   A+ +  + + + E Y    GK 
Sbjct: 84  LIAMAGDHIE--MSPVARMMIHNPSSIAQGEVKDLNHAAETLEHVGQIMAEAYAVRAGKN 141

Query: 177 YEEVEKTLDRDHIMSASEACDWGVVD 202
            +E+ + + ++  ++A EA + G  D
Sbjct: 142 KQELVEMMAKETWLNADEAIEQGFAD 167


>gi|242243098|ref|ZP_04797543.1| bacteriophage protease [Staphylococcus epidermidis W23144]
 gi|242233446|gb|EES35758.1| bacteriophage protease [Staphylococcus epidermidis W23144]
          Length = 248

 Score = 92.6 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 71/155 (45%), Gaps = 6/155 (3%)

Query: 48  TGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFC 107
               E   AT +   L  +EA    K I + +NSPGG    G+ IY+ ++ +   +    
Sbjct: 33  GYFYEGTSATDVRKALENVEA----KTIRIKLNSPGGNAFDGLEIYNYLKDLDAHVIVEV 88

Query: 108 MGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNE 167
              AAS  S++    ++        + +++H  S    G   ++ +  + + KI   + +
Sbjct: 89  TALAASAASIIAMGADEV--IMRTGSTMMIHNASTITYGNKDEMLKVYEYLAKIDTSIID 146

Query: 168 IYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
           +Y +  G + +E+++ L+ +   +ASEA + G  D
Sbjct: 147 VYKEKTGLSTDEIKEMLNNETWFTASEAVEKGFAD 181


>gi|41189530|ref|NP_958605.1| 77ORF015 [Staphylococcus phage 77]
 gi|40557231|gb|AAR87887.1| 77ORF015 [Staphylococcus phage 77]
          Length = 245

 Score = 92.6 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/146 (26%), Positives = 71/146 (48%), Gaps = 2/146 (1%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
              C + +  + E   +++ + INS GG + AG  IY  ++  K  ++      AAS  S
Sbjct: 24  DSTCPKDVLTQLEFSDEDVDIIINSNGGNLVAGSEIYTHLRAHKGKVNVRITAIAASAAS 83

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
           L+  AG+       P AR+++H PS    G+  D+   A+ +  + + + E Y    GK 
Sbjct: 84  LIAMAGDHIE--MSPVARMMIHNPSSIAQGEVKDLNHAAETLEHVGQIMAEAYAVRAGKN 141

Query: 177 YEEVEKTLDRDHIMSASEACDWGVVD 202
            +E+ + + ++  ++A EA + G  D
Sbjct: 142 KQELIEMMAKETWLNADEAIEQGFAD 167


>gi|21359778|gb|AAM49612.1|AF513857_3 phiN315 scaffolding protein-like protein [Staphylococcus phage
           phi77]
          Length = 245

 Score = 92.6 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/146 (26%), Positives = 71/146 (48%), Gaps = 2/146 (1%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
              C + +  + E   +++ + INS GG + AG  IY  ++  K  ++      AAS  S
Sbjct: 24  DSTCPKDVLTQLEFSDEDVDIIINSNGGNLVAGSEIYTHLRAHKGKVNVRITAIAASAAS 83

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
           L+  AG+       P AR+++H PS    G+  D+   A+ +  + + + E Y    GK 
Sbjct: 84  LIAMAGDHIE--MSPVARMMIHNPSSIAQGEVKDLNHAAETLEHVGQIMAEAYAVRAGKN 141

Query: 177 YEEVEKTLDRDHIMSASEACDWGVVD 202
            +E+ + + ++  ++A EA + G  D
Sbjct: 142 KQELIEMMAKETWLNADEAIEQGFAD 167


>gi|254503204|ref|ZP_05115355.1| Clp protease domain protein [Labrenzia alexandrii DFL-11]
 gi|222439275|gb|EEE45954.1| Clp protease domain protein [Labrenzia alexandrii DFL-11]
          Length = 267

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 6/134 (4%)

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
           Q+++++ INSPGG   +G+A+Y+ ++     ++   +GQA+S  S++  AG++       
Sbjct: 58  QRDVTVNINSPGGNFFSGLAVYNLLRMHSAKVTVNVIGQASSAASVVAMAGDEI--LMAD 115

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR----D 187
            A +++H  SG   G   D +     +  I   + EIY    G     V   +DR     
Sbjct: 116 GATLMVHNASGVTIGNKFDTQDATDILTDIDAVMAEIYAARSGADPSTVSGWMDRGRGAG 175

Query: 188 HIMSASEACDWGVV 201
              S   A + G+ 
Sbjct: 176 TCFSVKRALEAGLA 189


>gi|254224908|ref|ZP_04918523.1| Protease subunit of ATP-dependent Clp proteases [Vibrio cholerae
           V51]
 gi|125622596|gb|EAZ50915.1| Protease subunit of ATP-dependent Clp proteases [Vibrio cholerae
           V51]
          Length = 292

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 71/148 (47%), Gaps = 5/148 (3%)

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K +++YINSPGG +  G+AI++ +Q     ++   +G AAS  S++  A +   R    
Sbjct: 73  DKPVTVYINSPGGDMWEGIAIHNRLQEHSQKVTIKVIGIAASAASIIAMASDD--RQIAT 130

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           ++ +++H       G    +   A  + +    + ++Y    G+  EE+ + +D +  + 
Sbjct: 131 SSFLMIHNCWTCICGNRHFMREMADTMEEFDMAMADVYADTSGQPVEEMSRMMDAESYIR 190

Query: 192 ASEACDWGVVDKVLMS---RIDIEEKSK 216
             +A + G+   ++     +   +E+SK
Sbjct: 191 GKKAVELGLCTSIIDPSEVKETNDEESK 218


>gi|299533259|ref|ZP_07046643.1| peptidase S14 ClpP [Comamonas testosteroni S44]
 gi|298718789|gb|EFI59762.1| peptidase S14 ClpP [Comamonas testosteroni S44]
          Length = 292

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 82/189 (43%), Gaps = 12/189 (6%)

Query: 20  PMVVEQTNRGE-RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           P V    + GE RS  IY  +  +   + TG  +   A  I   L  L A      +++ 
Sbjct: 32  PGVQAAVDEGEDRSISIYDVIGYD---YWTG--DGVTARRIAGALRSLGA----GPVTVN 82

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           +NSPGG V  G+AIY+ ++  +  ++   +G AAS  S++  AG+            ++H
Sbjct: 83  VNSPGGDVFEGLAIYNLLREHQGEVTVKVLGLAASAASIIAMAGDTVQ--IARAGFFMVH 140

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
                 +G  +D    A  +      L +IY    G   + + K +D +  +  S A D 
Sbjct: 141 NVWTVAAGNRNDYRELADWLEPFDSALADIYAARTGADVKAMGKLMDAESWIGGSSAIDQ 200

Query: 199 GVVDKVLMS 207
           G  D++L S
Sbjct: 201 GFADELLPS 209


>gi|238568809|ref|XP_002386506.1| hypothetical protein MPER_15208 [Moniliophthora perniciosa FA553]
 gi|215438682|gb|EEB87436.1| hypothetical protein MPER_15208 [Moniliophthora perniciosa FA553]
          Length = 80

 Score = 92.2 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 7/71 (9%)

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT-------YEEVEKTLDRDHIMSASEAC 196
            SGQA+DI  HA++I++I++ L  IY K+CGK         +  EK L+RD+ M+A EA 
Sbjct: 2   ASGQATDIAIHAKEILRIRKLLTSIYQKHCGKPGESVADGLDRFEKALERDYFMTAQEAV 61

Query: 197 DWGVVDKVLMS 207
           D+G+VD +L  
Sbjct: 62  DFGIVDAILEK 72


>gi|83944470|ref|ZP_00956923.1| putative ClpP-like protease [Sulfitobacter sp. EE-36]
 gi|83844672|gb|EAP82556.1| putative ClpP-like protease [Sulfitobacter sp. EE-36]
          Length = 284

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 2/132 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
            +++ +NSPGG    G+AIY+ ++    P++   +G AAS  S++  AG++ +R A    
Sbjct: 75  PVTVNVNSPGGDYFEGLAIYNLLREHPEPVTVNILGIAASAASVIAMAGDE-VRIARA-G 132

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H    G +G    +   A  +        EIY    G    ++   LDR+  +   
Sbjct: 133 FLMIHNTWIGAAGDRHGLREVADWLEPFDATAVEIYAARTGIATADLATMLDRETWIGGQ 192

Query: 194 EACDWGVVDKVL 205
            A D G  D +L
Sbjct: 193 SAIDQGFADTLL 204


>gi|225223|prf||1211235BE ORF 74B
          Length = 74

 Score = 91.8 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 38/72 (52%), Positives = 51/72 (70%)

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           +++L  E+  K++ L+INSPGG V  G+AIYDTMQF++P + T CMG AASMGS +L  G
Sbjct: 1   MVYLSIEDETKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVHTICMGLAASMGSFILVGG 60

Query: 123 EKGMRFALPNAR 134
           E   R A P+A 
Sbjct: 61  EITKRLAFPHAW 72


>gi|167032211|ref|YP_001667442.1| peptidase S14 ClpP [Pseudomonas putida GB-1]
 gi|166858699|gb|ABY97106.1| peptidase S14 ClpP [Pseudomonas putida GB-1]
          Length = 383

 Score = 91.8 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 71/163 (43%), Gaps = 7/163 (4%)

Query: 45  VFVTGQIEDH--MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           +++ G+I      A      L  ++  +    + +  N+ GG +  G+AI++ ++ +   
Sbjct: 46  IYIYGEIGGWGITANQFLRDLKAID--DGVSPVHVAFNTSGGDLFEGVAIHNALRRLGER 103

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIK 162
            +      AAS GS+ +    +    A   A +++H P     G A ++ R A  + +  
Sbjct: 104 CTGRIDALAASAGSVAVCGAHRV--VAASTAILMIHNPYTWIEGDAEELRRVADVLDQAF 161

Query: 163 RRLNEIYVKNC-GKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             +   Y          E+ + ++ +  ++A EA D G+VD++
Sbjct: 162 EVIIAAYKAKSPEIDEAELRRLVNDESWLTAQEALDLGLVDEI 204


>gi|83955408|ref|ZP_00964039.1| putative ClpP-like protease [Sulfitobacter sp. NAS-14.1]
 gi|83840052|gb|EAP79227.1| putative ClpP-like protease [Sulfitobacter sp. NAS-14.1]
          Length = 284

 Score = 91.8 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 2/132 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
            +++ +NSPGG    G+AIY+ ++    P++   +G AAS  S++  AG++ +R A    
Sbjct: 75  PVTVNVNSPGGDYFEGLAIYNLLREHPEPVTVNILGIAASAASVIAMAGDE-VRIARA-G 132

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H    G +G    +   A  +        EIY    G    ++   LDR+  +   
Sbjct: 133 FLMIHNTWIGAAGDRHGLREVADWLEPFDATAVEIYAARTGIATADLAMMLDRETWIGGQ 192

Query: 194 EACDWGVVDKVL 205
            A D G  D +L
Sbjct: 193 SAIDQGFADTLL 204


>gi|167768863|ref|ZP_02440916.1| hypothetical protein ANACOL_00180 [Anaerotruncus colihominis DSM
           17241]
 gi|167669035|gb|EDS13165.1| hypothetical protein ANACOL_00180 [Anaerotruncus colihominis DSM
           17241]
          Length = 432

 Score = 91.8 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 85/212 (40%), Gaps = 10/212 (4%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIV-FVTGQIEDHMATLI 59
           MS    +K  + ++   +    +  T+       +Y  + +E+ V + TG+  +    L+
Sbjct: 21  MSNPSKSKGPAVNIQRSV--YTMATTDGSSAEIVMYGDIYEEQPVDWWTGKPVEGKYILL 78

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ---FIKPPISTFCMGQAASMGS 116
              L  LE     K I++ +NS GG       I++ ++        +     G A S GS
Sbjct: 79  SEFLDDLEQIAKCKSITIRMNSYGGDAGVSNTIHNRLRELARNGAELICVVDGVAMSGGS 138

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSG--QASDIERHAQDIVKIKRRLNEIYVKNCG 174
           L++ A +       P++ I++H+      G   A ++ + A       +    IY +  G
Sbjct: 139 LIMCACDTVR--VNPSSLIMIHKCWSYIWGDYNADELRQMADQNDAWDKMQITIYKRKTG 196

Query: 175 KTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
            +   +   +     M+  EA D G  D+VL 
Sbjct: 197 LSDTVLSHMMADTTYMTGKEAVDKGFADEVLE 228


>gi|220925602|ref|YP_002500904.1| peptidase S14 ClpP [Methylobacterium nodulans ORS 2060]
 gi|219950209|gb|ACL60601.1| peptidase S14 ClpP [Methylobacterium nodulans ORS 2060]
          Length = 400

 Score = 91.5 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 2/142 (1%)

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           +L L      +++++ +NS GG+ T G AI+  +   +   +    G AAS  S++  AG
Sbjct: 31  ILALAQVGRGQDVTIRLNSGGGIATEGAAIHAALCAHRGRKTIIVEGVAASAASVIAMAG 90

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
           ++        A +++H PSG   G  S+ E   + +  +   +  IY +  GKT E    
Sbjct: 91  DEI--VMARGAVMMIHDPSGFTFGPVSEHEVAIRMLTSLATAMAGIYAERSGKTPEAARA 148

Query: 183 TLDRDHIMSASEACDWGVVDKV 204
            +  +  M+  EA   G  D+V
Sbjct: 149 DMQAELWMAPEEAVAAGYADRV 170


>gi|124005680|ref|ZP_01690519.1| fels-1 prophage protease subunits of ATP-dependent proteases
           [Microscilla marina ATCC 23134]
 gi|123988748|gb|EAY28354.1| fels-1 prophage protease subunits of ATP-dependent proteases
           [Microscilla marina ATCC 23134]
          Length = 399

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 12/143 (8%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPP-----ISTFCMGQAASMGSLLLSAGEKGMR 127
           + +++ INSPGG +T G++I   +  I        I T+  G A S+  L+   G+K   
Sbjct: 51  RRLNVRINSPGGKITDGLSICAAILNINQTTPGVRIDTYVDGLALSIAGLIAVCGKKVGM 110

Query: 128 FALPNARILLHQPSGGFSG-QASDIERHAQD--IVKIKRRLNEIYVKNCGKTYEEVEKTL 184
                A+++LH P     G  ++D     Q   ++++K  L  +     G+  + +   +
Sbjct: 111 CNF--AKLMLHNP--FIGGKNSTDPNEAGQHETLMQVKEMLLTLLATRTGQKVDTLSAMM 166

Query: 185 DRDHIMSASEACDWGVVDKVLMS 207
           ++   +SA+EA   G VD+V   
Sbjct: 167 NQTTWLSAAEAKRQGFVDEVFEH 189


>gi|225222|prf||1211235BD ORF 73
          Length = 73

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 136 LLHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           ++HQP S  +  Q  +    A++++K++  L  +YV+  GK    V + ++RD  MSA+E
Sbjct: 1   MIHQPASSFYEAQTGEFVLEAEELLKLRETLTRVYVQRTGKPLWVVSEDMERDVFMSATE 60

Query: 195 ACDWGVVDKV 204
           A  +G+VD V
Sbjct: 61  AQAYGIVDLV 70


>gi|124004284|ref|ZP_01689130.1| Clp protease domain protein [Microscilla marina ATCC 23134]
 gi|123990354|gb|EAY29853.1| Clp protease domain protein [Microscilla marina ATCC 23134]
          Length = 425

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 12/143 (8%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPP-----ISTFCMGQAASMGSLLLSAGEKGMR 127
           + +++ INSPGG +T G+++   +  I        I T+  G A S+  L+   G+K   
Sbjct: 51  RRLNVRINSPGGKITDGLSVCAAILNINQTTPNVRIDTYVDGLALSIAGLIAVCGKKVGM 110

Query: 128 FALPNARILLHQPSGGFSG-QASDIERHAQD--IVKIKRRLNEIYVKNCGKTYEEVEKTL 184
                A+++LH P     G  ++D     Q   ++++K  L  +     G+  E +   +
Sbjct: 111 CNF--AKLMLHNP--FIGGKNSTDPNEAGQHETLMQVKEMLLTLLATRTGQKIETLSAMM 166

Query: 185 DRDHIMSASEACDWGVVDKVLMS 207
           ++   +SA+EA   G VD+V   
Sbjct: 167 NQTTWLSAAEAKRQGFVDEVFEH 189


>gi|29565981|ref|NP_817552.1| gp103 [Mycobacterium phage Cjw1]
 gi|109302855|ref|YP_654857.1| gp102 [Mycobacterium phage 244]
 gi|29424706|gb|AAN01717.1| gp103 [Mycobacterium phage Cjw1]
 gi|88910146|gb|ABD58077.1| gp102 [Mycobacterium phage 244]
 gi|255928421|gb|ACU42037.1| gp103 [Mycobacterium phage Pumpkin]
          Length = 286

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 18/170 (10%)

Query: 51  IEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK---------- 100
           + D+       QL     E+P  ++ + +NSPGG V AGM ++D +              
Sbjct: 118 VNDYSVEACLNQLALWHREDPNCDMHIVMNSPGGSVIAGMHLFDQIAAYSTRPWDTSDRP 177

Query: 101 ---PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
                 +    G AASMG +LL + ++  R   P A +++H+ S G  G+  +IE     
Sbjct: 178 KGTHKTTMTVRGMAASMGGILLQSVDE--RIIGPEAYLMIHEISAGTGGKIGEIEDMVGW 235

Query: 158 IVKIKRRLNEIYVKNCG--KTYEEVEKTLDR-DHIMSASEACDWGVVDKV 204
              +  R+ +++V   G   T EE +    R D  + + EA  +G VD++
Sbjct: 236 YRHLCARIAKVFVHRAGGKITAEEFDAGWKRTDWWLDSDEALRYGFVDRI 285


>gi|298375375|ref|ZP_06985332.1| ATP-dependent Clp protease proteolytic subunit 2 (Endopeptidase Clp
           2) [Bacteroides sp. 3_1_19]
 gi|298267875|gb|EFI09531.1| ATP-dependent Clp protease proteolytic subunit 2 (Endopeptidase Clp
           2) [Bacteroides sp. 3_1_19]
          Length = 438

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 75/162 (46%), Gaps = 8/162 (4%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
           + +   I+++ A    ++ L++E+     +I + INS GG V  GM+I+  ++    P  
Sbjct: 21  IRLFCDIDEYTANSFNSEFLWVESYIKPSKIRVLINSSGGSVLYGMSIFSVIRNSSIPTE 80

Query: 105 TFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRR 164
               G AASMGS++ +AG+K        A +++H P         D E     +   +++
Sbjct: 81  CINEGLAASMGSIVWAAGDK--SLMRDYAILMIHNPFDSTEDN-KDTEGEPDYVKAFRQQ 137

Query: 165 LNEIYVKNCGKTYEEVEKTLD-----RDHIMSASEACDWGVV 201
           +  IY+K  G    +V++ +           +A EA   G++
Sbjct: 138 IEMIYMKRWGFNKTKVKELMSGKEGTDGTFFTAEEAVKAGII 179


>gi|217069988|gb|ACJ83354.1| unknown [Medicago truncatula]
          Length = 216

 Score = 90.3 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/132 (37%), Positives = 76/132 (57%), Gaps = 11/132 (8%)

Query: 17  GLVPMVVE---QTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQK 73
           G+V MV+     T   +   D+ S L K RIV++   +   +  L+ A+ L+L+ ++  K
Sbjct: 84  GVVTMVIPFSRGTAWEQPPPDLASYLYKNRIVYLGMSLVPSVTELMVAEFLYLQYDDETK 143

Query: 74  EISLYINSPG--------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
            I +YINS G        G  T  +A+YD M++IKPPI T C+G A    +LLL+AG KG
Sbjct: 144 PIYMYINSTGTTKGGEKLGYETEALAVYDLMRYIKPPIFTLCVGNAWGEAALLLAAGAKG 203

Query: 126 MRFALPNARILL 137
            R ALP++ I++
Sbjct: 204 NRSALPSSTIMI 215


>gi|226948757|ref|YP_002803848.1| serine protease [Clostridium botulinum A2 str. Kyoto]
 gi|226843453|gb|ACO86119.1| serine protease [Clostridium botulinum A2 str. Kyoto]
          Length = 253

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 9/156 (5%)

Query: 50  QIEDHMATLICAQLL--FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFC 107
           Q         C Q +  FL+  N    + +YINS GG V AG+AIY  ++      +   
Sbjct: 44  QWGKWSDDDTCPQDVANFLKELNSFDNLDIYINSGGGSVFAGIAIYHQLKRHNGFKTVHI 103

Query: 108 MGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG---QASDIERHAQDIVKIKRR 164
            G AAS+ S++  AG+K       +A+ ++H+P+  +      A ++ + A  +   +  
Sbjct: 104 DGIAASITSVISCAGDKV--IIPKSAQFMIHKPTASYFWTSLNADELRKEADTLDICQDS 161

Query: 165 LNEIYVKNCG--KTYEEVEKTLDRDHIMSASEACDW 198
           +  IY++N     T EE+   ++ +   +     D+
Sbjct: 162 IRNIYMENVKEDITEEEINNLINAETWFTGETVTDY 197


>gi|194303154|ref|YP_002014569.1| gp101 [Mycobacterium phage Kostya]
 gi|194153202|gb|ACF34268.1| gp101 [Mycobacterium phage Kostya]
          Length = 268

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 18/170 (10%)

Query: 51  IEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK---------- 100
           + D+       QL     E+P  ++ + +NSPGG V AGM ++D +              
Sbjct: 100 VNDYSVEACLNQLALWHREDPNCDMHIVMNSPGGSVIAGMHLFDQIAAYSTRPWDTSDRP 159

Query: 101 ---PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
                 +    G AASMG +LL + ++  R   P A +++H+ S G  G+  +IE     
Sbjct: 160 KGTHKTTMTVRGMAASMGGILLQSVDE--RIIGPEAYLMIHEISAGTGGKIGEIEDMVGW 217

Query: 158 IVKIKRRLNEIYVKNCG--KTYEEVEKTLDR-DHIMSASEACDWGVVDKV 204
              +  R+ +++V   G   T EE +    R D  + + EA  +G VD++
Sbjct: 218 YRHLCARIAKVFVHRAGGKITAEEFDAGWKRTDWWLDSDEALRYGFVDRI 267


>gi|168236909|ref|ZP_02661967.1| ClpP protease [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194734371|ref|YP_002117151.1| ClpP protease [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194709873|gb|ACF89094.1| ClpP protease [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197290051|gb|EDY29410.1| ClpP protease [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 282

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 63/133 (47%), Gaps = 2/133 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           ++++ INSPGG +  G+AIY+ ++  +  ++   +G AAS  S++  AG+         A
Sbjct: 75  DVTVNINSPGGDMFEGLAIYNLLREYQGKVTVKVLGIAASAASVIAMAGDDIQ--IGRGA 132

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H       G   D    +  +      + +IY    G     V+K +D +  +  S
Sbjct: 133 FLMIHNCWVVAMGNRHDFAELSASLEPFDNAMADIYAARSGLDMVTVQKLMDAESYIGGS 192

Query: 194 EACDWGVVDKVLM 206
           +A + G+ D +L 
Sbjct: 193 DAVEKGLADSLLS 205


>gi|220916410|ref|YP_002491714.1| peptidase S14 ClpP [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954264|gb|ACL64648.1| peptidase S14 ClpP [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 260

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 67/150 (44%), Gaps = 11/150 (7%)

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP-PISTFCMGQAASMGSLLLSAGE 123
            L+  +  + ++++INSPGG V  G A+   ++ ++         G AAS  +++    +
Sbjct: 70  QLKQADGARRVNVHINSPGGDVDQGKAMLSGLRSLRAGEKVAVVEGLAASAATVVAMGAD 129

Query: 124 KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
           +      P A  ++H+ SGG  G A+D E+ A+ +      +  +Y K  G     + + 
Sbjct: 130 RV--VMEPEAVFMIHEASGGMWGSAADHEKFAEILRMDNAAVRALYAKKTGLDDGRIAEL 187

Query: 184 LDRD--------HIMSASEACDWGVVDKVL 205
           +             M A+ A + G  D+VL
Sbjct: 188 MAAQEPGGTVPGTYMDAARARELGFADEVL 217


>gi|294783567|ref|ZP_06748891.1| ClpP protease family protein [Fusobacterium sp. 1_1_41FAA]
 gi|294480445|gb|EFG28222.1| ClpP protease family protein [Fusobacterium sp. 1_1_41FAA]
          Length = 238

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 62/127 (48%), Gaps = 4/127 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           E+ ++INS GG V AG+AI + ++  K     +  G +AS  S++     +       NA
Sbjct: 59  EVHVHINSYGGDVFAGLAISNMLKNHKAKTVAYVDGLSASSASIIAFGCNEI--VIPSNA 116

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC--GKTYEEVEKTLDRDHIMS 191
            +++H+ S G  G A D  +  + + KI+  + + Y++    G T E++   +  +   +
Sbjct: 117 YLMIHRVSCGLFGNADDFLKQVEVMEKIEEGIVDTYMEKAVEGVTKEQIYDLMKAETWFT 176

Query: 192 ASEACDW 198
             +  ++
Sbjct: 177 GKDCLNY 183


>gi|194303396|ref|YP_002014421.1| gp100 [Mycobacterium phage Porky]
 gi|194150881|gb|ACF33917.1| gp100 [Mycobacterium phage Porky]
          Length = 259

 Score = 89.5 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 18/170 (10%)

Query: 51  IEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK---------- 100
           + D+       QL     E+P  ++ + +NSPGG V AGM ++D +              
Sbjct: 91  VNDYSVEACLNQLALWHREDPNCDMHIVMNSPGGSVIAGMHLFDQIAAYSTRPWDTSDRP 150

Query: 101 ---PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
                 +    G AASMG +LL + ++  R   P A +++H+ S G  G+  +IE     
Sbjct: 151 KGTHKTTMTVRGMAASMGGILLQSVDE--RIIGPEAYLMIHEISAGTGGKIGEIEDMVGW 208

Query: 158 IVKIKRRLNEIYVKNCG--KTYEEVEKTLDR-DHIMSASEACDWGVVDKV 204
              +  R+ +++V   G   T EE +    R D  + + EA  +G VD++
Sbjct: 209 YRHLCARIAKVFVHRAGGKITAEEFDAGWKRTDWWLDSDEALRYGFVDRI 258


>gi|281491948|ref|YP_003353928.1| phage ATP-dependent endopeptidase ClpP [Lactococcus lactis subsp.
           lactis KF147]
 gi|281375657|gb|ADA65161.1| Phage protein, ATP-dependent endopeptidase ClpP, proteolytic
           subunit clpP [Lactococcus lactis subsp. lactis KF147]
          Length = 237

 Score = 89.5 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 2/135 (1%)

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
             +E+ L I+S GG V +   IY  ++     I     G AAS  S++  AG+       
Sbjct: 43  EDEEVILNISSNGGDVFSASEIYTKLKNSNKNIVVNIEGIAASAASVIAMAGDTVN--IS 100

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           P A++++H+ S G  G A D E  A+ +  + + +   Y    G    ++ + +  +  M
Sbjct: 101 PTAQLMIHKASSGGQGNADDFEHEAKVLNGVDQSITAAYELKTGMKQSDLLQLMSNETWM 160

Query: 191 SASEACDWGVVDKVL 205
           +A +A D G  D ++
Sbjct: 161 TAQDAVDKGFADNIM 175


>gi|228943756|ref|ZP_04106155.1| Clp protease [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228976688|ref|ZP_04137118.1| Clp protease [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228982345|ref|ZP_04142620.1| Clp protease [Bacillus thuringiensis Bt407]
 gi|228777391|gb|EEM25683.1| Clp protease [Bacillus thuringiensis Bt407]
 gi|228783035|gb|EEM31184.1| Clp protease [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228815908|gb|EEM62134.1| Clp protease [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|326940367|gb|AEA16263.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 210

 Score = 89.5 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 71/159 (44%), Gaps = 5/159 (3%)

Query: 58  LICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSL 117
            I +Q +    +    +I ++INS GG    G+AI + ++     ++    G AAS  SL
Sbjct: 12  DISSQGVREMLDGVTNDIEIHINSNGGDAFEGIAICNYLKNHPSNVTAVIDGIAASAASL 71

Query: 118 LLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTY 177
           +     K       N  +++H+ S    G A  +E+ A+ +  +   L + Y       +
Sbjct: 72  IAMGANKIE--MPSNTTMMVHRASTYAFGNADSLEKQAKMLRDVDEALIQSYNSRFNGEF 129

Query: 178 EEVEKTLDRDHIMSASEACDWGVVDKV---LMSRIDIEE 213
            ++E  LD +  M+A +A  +G  D +   + S +D E 
Sbjct: 130 FQLETLLDNETYMTAEKAKSFGFCDVITDSIQSSVDSES 168


>gi|315497375|ref|YP_004086179.1| peptidase s14 clpp [Asticcacaulis excentricus CB 48]
 gi|315415387|gb|ADU12028.1| peptidase S14 ClpP [Asticcacaulis excentricus CB 48]
          Length = 274

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 75/192 (39%), Gaps = 13/192 (6%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
             DV     P   E  N G+ +  IY         ++     D            L +  
Sbjct: 23  PSDVLAKWTPQAAE--NEGDATISIYD--------YIGYDYWDGGGFTAARAAAALRSIG 72

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
           P   + + INS GG +  G+AIY+  +     ++   MG AAS  S++  + ++      
Sbjct: 73  PN-PVEVRINSGGGDMFEGLAIYNLFREHPAKVTVKVMGMAASAASIIAMSADEL--VMA 129

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
             + +++H   G   G  +++   A+   +    + EIY         +++  +D++  +
Sbjct: 130 TGSFLMIHNAWGVVVGNRNEMRAAAETFDEFDLAMAEIYQHRSNIDLADIQAMMDKETWL 189

Query: 191 SASEACDWGVVD 202
            ASEA   G  D
Sbjct: 190 RASEAVKQGFAD 201


>gi|191637762|ref|YP_001986928.1| Clp protease domain protein [Lactobacillus casei BL23]
 gi|190712064|emb|CAQ66070.1| Clp protease domain protein [Lactobacillus casei BL23]
 gi|327381829|gb|AEA53305.1| ClpP protease [Lactobacillus casei LC2W]
 gi|327384991|gb|AEA56465.1| ClpP protease [Lactobacillus casei BD-II]
          Length = 235

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 2/141 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           ++S+ INS GG++ AG  IY  ++  K P++   +G A S  SL+  AG+  +    P  
Sbjct: 44  DLSVEINSGGGILDAGSEIYTMLRAYKGPVNVNVVGVAYSAASLIAMAGD--VVAVSPAG 101

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            +++H  S G  G   D++  A  + K    +   Y+   G +  E+   +D  + +   
Sbjct: 102 MMMIHNVSSGQMGDYHDMQNAADSLKKSNIAIANAYMAKTGLSQTEILDLMDSTYWLDPQ 161

Query: 194 EACDWGVVDKVLMSRIDIEEK 214
            A + G  DK++    +   K
Sbjct: 162 TAIEKGFADKMMFDNAEKPGK 182


>gi|304383262|ref|ZP_07365731.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
 gi|304335616|gb|EFM01877.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
          Length = 369

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 86/173 (49%), Gaps = 14/173 (8%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM 108
           G+ +   +  +  +L+ L A  P+  I + INS GG V +GMAI++ ++  K  I+ +  
Sbjct: 25  GEGQQVDSKAVVEELITLAARYPK--IDVRINSCGGDVFSGMAIFNALKTSKADITVYID 82

Query: 109 GQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           G AAS+ +++   G+    +  P A+++LH    G  G A  +E+  Q I ++   L+ +
Sbjct: 83  GVAASIAAIVALCGKPL--YMAPYAKLMLHSVKAGGYGDAKQLEQTIQLINQLHGDLSNM 140

Query: 169 YVKNCGKTYEEVEKTLDR-----DHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
                  T EEVE+   R     DH ++A EA    +++ +  +  D  E  K
Sbjct: 141 VSARLNITPEEVEQ---RFFDGTDHWLTAQEALQMKLINGIYET--DTAEAPK 188


>gi|296102063|ref|YP_003612209.1| putative protease [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295056522|gb|ADF61260.1| putative protease [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 550

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 38/69 (55%)

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++H+P G   G A+D+  +A  + K++  L   Y +  GK+ EE+   L+ +  MS SE 
Sbjct: 1   MIHKPWGFAGGDATDMRDYADLLDKVESVLIPAYAQKTGKSTEEIAAMLEDETWMSGSEC 60

Query: 196 CDWGVVDKV 204
            + G  D+V
Sbjct: 61  LELGFADQV 69


>gi|77415230|ref|ZP_00791222.1| Clp protease [Streptococcus agalactiae 515]
 gi|77158720|gb|EAO70039.1| Clp protease [Streptococcus agalactiae 515]
          Length = 85

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%)

Query: 129 ALPNARILLHQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
            LPNA  ++HQP    G   Q SD+   A+ ++K +  L +I   N G++ E+V    +R
Sbjct: 1   MLPNAEYMIHQPMGGTGGGTQQSDMAIAAEHLLKTRHTLEKILADNSGQSIEKVHDDAER 60

Query: 187 DHIMSASEACDWGVVDKVLMS 207
           D  MSA E  D+G +D ++ +
Sbjct: 61  DRWMSAQETLDYGFIDAIMEN 81


>gi|124009870|ref|ZP_01694537.1| Clp protease domain protein [Microscilla marina ATCC 23134]
 gi|123984106|gb|EAY24472.1| Clp protease domain protein [Microscilla marina ATCC 23134]
          Length = 425

 Score = 89.2 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 76/166 (45%), Gaps = 11/166 (6%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP-----PI 103
            +    ++    A+ L+       + +++ INSPGG +T G++I   +  I        I
Sbjct: 28  NEEGKGISEQRFAKELY-SLARRYRRLNVRINSPGGKITDGLSICAAILNINQSTPGVRI 86

Query: 104 STFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP--SGGFSGQASDIERHAQDIVKI 161
            T+  G A S+  L+   G+K        A+++LH P   G  S   ++  +H + ++++
Sbjct: 87  DTYVDGLALSIAGLIAVCGKKVGMCNF--AKLMLHNPFIGGKNSTNPNEAGQH-ETLMQV 143

Query: 162 KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           K  L  +     G+  + +   +++   +SA+EA   G VD+V   
Sbjct: 144 KEMLLTLLATRTGQKVDTLSAMMNQTTWLSAAEAKRQGFVDEVFEH 189


>gi|260588232|ref|ZP_05854145.1| Clp protease [Blautia hansenii DSM 20583]
 gi|260541370|gb|EEX21939.1| Clp protease [Blautia hansenii DSM 20583]
          Length = 207

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/175 (24%), Positives = 80/175 (45%), Gaps = 9/175 (5%)

Query: 38  RLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQ------KEISLYINSPGGVVTAGMA 91
           + L +R + +   +++ +   +   +     E+        K I LY+NSPGG VT G+ 
Sbjct: 25  QYLAQRKIILNDIVDEDIVRNVTLNIFQWNKEDKDIPIEKRKPIWLYLNSPGGDVTEGLN 84

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           + D ++  + P+ T C    ASM   +  AG K  R+   N+ +L+H      S  +S  
Sbjct: 85  VIDVIKASQTPVYTVCFATCASMAFHIFIAGHK--RYCFKNSILLIHDGEVSISNSSSKA 142

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA-SEACDWGVVDKVL 205
           +   + I  +  R+ +  ++N   T E  E   D ++ + A  +  + G VD ++
Sbjct: 143 KDTMKFIESLDERIKQHILENTKITAEFYESIYDTEYYLFANDKGKELGCVDYII 197


>gi|76798617|ref|ZP_00780844.1| phage protein [Streptococcus agalactiae 18RS21]
 gi|76586016|gb|EAO62547.1| phage protein [Streptococcus agalactiae 18RS21]
          Length = 243

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 2/134 (1%)

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
               +I + INS GG V AG  IY T++  +  ++   +G AAS  S++  AG+  +   
Sbjct: 36  QDNSDIEVLINSGGGDVYAGSEIYTTLKSYQGNVTVKIVGIAASAASVIAMAGD--VVEI 93

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
            P A++++H  S   SG    +   A  +      +   YV   G    E+   +  +  
Sbjct: 94  SPTAQLMIHNVSTTVSGDHKQMLHEAGVLENYNISIANAYVNKTGLEMNELLDLMSTETW 153

Query: 190 MSASEACDWGVVDK 203
            +A +A + G  DK
Sbjct: 154 FNAQQAVEKGFADK 167


>gi|124002916|ref|ZP_01687767.1| Clp protease domain protein [Microscilla marina ATCC 23134]
 gi|123991566|gb|EAY30974.1| Clp protease domain protein [Microscilla marina ATCC 23134]
          Length = 425

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 10/142 (7%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKP-----PISTFCMGQAASMGSLLLSAGEKGMR 127
           + +++ INSPGG +T G++I   +  I        I T+  G A S+  L+   G+K   
Sbjct: 51  RRLNVRINSPGGKITDGLSICAAILNINQSTPNVRIDTYVDGLALSIAGLIAVCGKKVGM 110

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQD--IVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
                A+++LH P    S  ++D     Q   ++++K  L  +     G+  E++   ++
Sbjct: 111 CNF--AKLMLHNPF-IGSKNSTDPNEAGQHETLMQVKEMLLTLLATRTGQKVEDLSFMMN 167

Query: 186 RDHIMSASEACDWGVVDKVLMS 207
           +   +SA+EA   G VD+V   
Sbjct: 168 QTTWLSAAEAKRQGFVDEVFEH 189


>gi|228962824|ref|ZP_04124079.1| Clp protease [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|228796861|gb|EEM44216.1| Clp protease [Bacillus thuringiensis serovar pakistani str. T13001]
          Length = 210

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 66/150 (44%), Gaps = 2/150 (1%)

Query: 58  LICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSL 117
            I +Q +    +    +I ++INS GG    G+AI + ++     ++    G AAS  SL
Sbjct: 12  DISSQGVREMLDGVTNDIEIHINSNGGDAFEGIAICNYLKNHPSNVTAVIDGIAASAASL 71

Query: 118 LLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTY 177
           +     K       N  +++H+ S    G A  +E+ A  +  +   L + Y       +
Sbjct: 72  IAMGANKIE--MPSNTTMMVHRASTYAFGNADSLEKQANMLRGVDEALIQSYNSRFNGEF 129

Query: 178 EEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
            ++E  LD +  M+A +A  +G  D +  S
Sbjct: 130 FQLETLLDNETYMTAEKAKSFGFCDVITDS 159


>gi|293570878|ref|ZP_06681924.1| Clp protease [Enterococcus faecium E980]
 gi|291609052|gb|EFF38328.1| Clp protease [Enterococcus faecium E980]
          Length = 225

 Score = 88.8 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 62/138 (44%), Gaps = 2/138 (1%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           E+ L I+S GG V A   IY  ++     +S   +  AAS  S++  A E       P A
Sbjct: 43  EVELDISSNGGDVLAASEIYTAIRAYPGKVSGNIVSIAASAASVIACACEPLR--ISPTA 100

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            I++H      SG A +++ +A+ +  +   +   Y    G   +++   + +D  ++A 
Sbjct: 101 HIMIHNAWVTTSGNAEELKANAEMLSSVDESIVNAYEIKTGLDRKKLADLMAKDTWLNAQ 160

Query: 194 EACDWGVVDKVLMSRIDI 211
            A   G  D+++ +   +
Sbjct: 161 TAVAEGFADEIMFAEAPV 178


>gi|313898167|ref|ZP_07831706.1| endopeptidase Clp [Clostridium sp. HGF2]
 gi|312957195|gb|EFR38824.1| endopeptidase Clp [Clostridium sp. HGF2]
          Length = 178

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 52/125 (41%), Gaps = 2/125 (1%)

Query: 88  AGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQ 147
           A   IY+ M      ++    G AAS  S++  AG K      P + +++H P     G 
Sbjct: 2   AAAQIYNMMMEYPGNVTVKIDGIAASAASVIAMAGTKV--LVSPVSMLMIHNPMTAAMGD 59

Query: 148 ASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
            S++++    + ++K  +   Y    G +  ++   +D +  M A  A D G  D +L  
Sbjct: 60  TSEMQKAIAMLAEVKESIINAYEIKTGMSRAKLSHLMDAETWMDAHTAIDMGFADGILAK 119

Query: 208 RIDIE 212
             +  
Sbjct: 120 PAETP 124


>gi|239631906|ref|ZP_04674937.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|239526371|gb|EEQ65372.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
           paracasei subsp. paracasei 8700:2]
          Length = 241

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 2/133 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           +++ L INSPGG V AG  +   ++     I T  +G AAS  S++  AG+K      P 
Sbjct: 46  QDVVLEINSPGGDVFAGSEMATAIKNYSGSIITNIVGLAASAASVVALAGDKVE--MAPT 103

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A++++H+ S   +G    +    Q +  I + L ++YV   G +  +V   +  +  ++A
Sbjct: 104 AQLMIHRASTSANGNVDVLNSAGQSLDSIDQSLVDVYVAKTGMSPSDVYNMMVNETWINA 163

Query: 193 SEACDWGVVDKVL 205
            EA + G  D ++
Sbjct: 164 KEAVEKGFADDIM 176


>gi|330975103|gb|EGH75169.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
           syringae pv. aptata str. DSM 50252]
          Length = 61

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 38/57 (66%)

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           + HA++I+ I+ RLN +   + G++ E +E+  +RD+ MSA  A ++G++D V+  R
Sbjct: 1   DIHAKEILHIRHRLNSLLAHHTGQSLETIERDTERDNFMSAERAAEYGLIDSVINKR 57


>gi|168490153|ref|ZP_02714352.1| peptidase S14, ClpP [Streptococcus pneumoniae SP195]
 gi|168494827|ref|ZP_02718970.1| peptidase S14, ClpP [Streptococcus pneumoniae CDC3059-06]
 gi|168494909|ref|ZP_02719052.1| peptidase S14, ClpP [Streptococcus pneumoniae CDC3059-06]
 gi|168494962|ref|ZP_02719105.1| peptidase S14, ClpP [Streptococcus pneumoniae CDC3059-06]
 gi|168494989|ref|ZP_02719132.1| peptidase S14, ClpP [Streptococcus pneumoniae CDC3059-06]
 gi|183571470|gb|EDT91998.1| peptidase S14, ClpP [Streptococcus pneumoniae SP195]
 gi|183575135|gb|EDT95663.1| peptidase S14, ClpP [Streptococcus pneumoniae CDC3059-06]
 gi|183575170|gb|EDT95698.1| peptidase S14, ClpP [Streptococcus pneumoniae CDC3059-06]
 gi|183575218|gb|EDT95746.1| peptidase S14, ClpP [Streptococcus pneumoniae CDC3059-06]
 gi|183575291|gb|EDT95819.1| peptidase S14, ClpP [Streptococcus pneumoniae CDC3059-06]
          Length = 240

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 66/140 (47%), Gaps = 2/140 (1%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           +++ ++INS GG V AG  IY  ++  +  ++   +G AAS  S++  AG++      P 
Sbjct: 39  EDVEVHINSGGGDVYAGSEIYTALRAYQGHVTVKIVGIAASAASVIAMAGDQVE--ISPT 96

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A+I++H  S G  G    +   A  +    + +   Y+   GK  +++   ++ +    A
Sbjct: 97  AQIMIHNVSAGVRGDHKALLHEAGVLEGFNKSIAYAYIDKTGKALDDLLDLMEGETWFDA 156

Query: 193 SEACDWGVVDKVLMSRIDIE 212
             A + G  DKV+    +  
Sbjct: 157 RSAVNHGFADKVMFESQEAP 176


>gi|14251131|ref|NP_116498.1| putative ATP-dependent ClpP protein [Lactococcus phage BK5-T]
 gi|14209623|gb|AAK56806.1|AF176025_6 putative ATP-dependent ClpP protein [Lactococcus phage BK5-T]
 gi|26005527|emb|CAC80147.1| hypothetical protein [Lactococcus phage BK5-T]
          Length = 237

 Score = 88.0 bits (217), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 66/145 (45%), Gaps = 2/145 (1%)

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           +++  +      +E+ L I S GG V +   IY  ++     I     G AAS  S++  
Sbjct: 33  SKVKNILNNAEDEEVILNIASNGGDVFSASEIYTKLKNSNKNIVVNIEGIAASAASVIAM 92

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AG+       P A++++H+   G  G A D E+ A+ +  + + +   Y    G    ++
Sbjct: 93  AGDTVN--ISPTAQLMIHKAMSGSQGNADDFEQEAKVLNGVDQSIAAAYELKTGMKQSDL 150

Query: 181 EKTLDRDHIMSASEACDWGVVDKVL 205
            + +  +  M+A +A D G  D ++
Sbjct: 151 LQLMSNETWMTAQDAVDKGFADNIM 175


>gi|317062810|ref|ZP_07927295.1| ATP-dependent endopeptidase clp proteolytic subunit clpP
           [Fusobacterium ulcerans ATCC 49185]
 gi|313688486|gb|EFS25321.1| ATP-dependent endopeptidase clp proteolytic subunit clpP
           [Fusobacterium ulcerans ATCC 49185]
          Length = 251

 Score = 88.0 bits (217), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 77/167 (46%), Gaps = 7/167 (4%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           DI +    + I+   G  + ++  L   + L   AE   KE+ ++INS GG V AG+AI 
Sbjct: 27  DIENDAYNDGIMEWFGLKDTNVYPLEVKKAL---AEANNKEVHVHINSYGGEVFAGVAIC 83

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           + ++  K     +  G AAS  S++    ++       NA +++H+ S G  G A D+  
Sbjct: 84  NMLKNYKGKTVAYVDGLAASAASIIAFGCDEV--IIPNNAYLMIHRVSCGIWGNADDLRT 141

Query: 154 HAQDIVKIKRRLNEIYVKNC--GKTYEEVEKTLDRDHIMSASEACDW 198
             + + K++  +   Y +    G T E++   +  +   +  EA  +
Sbjct: 142 QIEVLEKLEDGIANTYEEKAVEGVTREDILNLMKEETWFTGEEAAKF 188


>gi|257468552|ref|ZP_05632646.1| Clp protease [Fusobacterium ulcerans ATCC 49185]
          Length = 246

 Score = 88.0 bits (217), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 77/167 (46%), Gaps = 7/167 (4%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           DI +    + I+   G  + ++  L   + L   AE   KE+ ++INS GG V AG+AI 
Sbjct: 22  DIENDAYNDGIMEWFGLKDTNVYPLEVKKAL---AEANNKEVHVHINSYGGEVFAGVAIC 78

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           + ++  K     +  G AAS  S++    ++       NA +++H+ S G  G A D+  
Sbjct: 79  NMLKNYKGKTVAYVDGLAASAASIIAFGCDEV--IIPNNAYLMIHRVSCGIWGNADDLRT 136

Query: 154 HAQDIVKIKRRLNEIYVKNC--GKTYEEVEKTLDRDHIMSASEACDW 198
             + + K++  +   Y +    G T E++   +  +   +  EA  +
Sbjct: 137 QIEVLEKLEDGIANTYEEKAVEGVTREDILNLMKEETWFTGEEAAKF 183


>gi|262113741|emb|CAR95408.1| hypothetical protein [Streptococcus phage phi-m46.1]
          Length = 139

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 4/128 (3%)

Query: 43  RIVFVTGQIEDHMA--TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           R + + GQI D       +  Q+   +      +I+L+INSPGG V A   IY+ +   K
Sbjct: 14  RTLRIEGQIGDETWFGDEVMPQVFKNDLHAGSGDITLWINSPGGDVFAAAPIYNMLMDYK 73

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
             +     G AAS  S++  AG        P A + +  P     G+  D ++  +   +
Sbjct: 74  GDVHVVIDGLAASAASVISMAGATV--SMSPVAMMRMSNPWSTSQGEVKDTQKVLEMFGE 131

Query: 161 IKRRLNEI 168
           IK  L + 
Sbjct: 132 IKESLIKA 139


>gi|228955834|ref|ZP_04117808.1| hypothetical protein bthur0006_51730 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228803843|gb|EEM50488.1| hypothetical protein bthur0006_51730 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 217

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 66/156 (42%), Gaps = 6/156 (3%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM 108
              +   A  + + L     E     + + +NS GG    G+ IY+ ++ +   +     
Sbjct: 12  WWYDAISAESVRSALK----EVRASTVKIKLNSGGGDADQGVEIYNYLKDLDKKVIVEVT 67

Query: 109 GQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEI 168
             AAS  S++  A ++        +R+++H+ S    G   DI++    +      +  I
Sbjct: 68  SLAASAASIIAMAADEI--VMRTGSRMMIHEASTIAYGNKQDIQKTLNALEAYDESIVSI 125

Query: 169 YVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           Y +  GK+ EE+   L+ +   +A +A   G  DKV
Sbjct: 126 YQQKTGKSREEITDLLEAETWFTAEQAVQEGFADKV 161


>gi|148257821|ref|YP_001242406.1| putative peptidase S14, ClpP [Bradyrhizobium sp. BTAi1]
 gi|146409994|gb|ABQ38500.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bradyrhizobium
           sp. BTAi1]
          Length = 684

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/160 (27%), Positives = 69/160 (43%), Gaps = 10/160 (6%)

Query: 48  TGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFC 107
            G  +   A  +   L+ L       + ++ INS GG+ T GMAIY  ++     I+   
Sbjct: 23  WGWGDGFTAEQVAKALVEL----GGGDATVRINSGGGIATEGMAIYSLLKAHPGKITVAI 78

Query: 108 MGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNE 167
            G AAS  SL+  AG++        A +++H PSG   G A   E  A  + K+      
Sbjct: 79  DGIAASAASLIAMAGDEIE--MRTGAMMMIHDPSGYTRGPAKVHEDAAAFLHKLADNYAS 136

Query: 168 IYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV----VDK 203
           +Y    G   +EV K +     ++A EA   G     +D+
Sbjct: 137 VYAIRAGMDAKEVRKLMLATTWLTAGEAVTQGFATKQIDE 176


>gi|86358529|ref|YP_470421.1| Clp protease protein [Rhizobium etli CFN 42]
 gi|86282631|gb|ABC91694.1| probable Clp protease protein [Rhizobium etli CFN 42]
          Length = 694

 Score = 87.2 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 78/189 (41%), Gaps = 18/189 (9%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDH--------MATLICAQLLFLEAENPQKEI 75
            Q NR E      S+L+ +  + + G +            ++ +   L  L       ++
Sbjct: 26  PQVNRIEAGM---SKLIVDGELMLYGPVGFTDFWDESGFTSSQVIEALSAL-----SGDV 77

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            + +NS GG+   G AI++ ++     +       AAS  SL+  AG++          +
Sbjct: 78  VVRLNSGGGIAMEGSAIHNALKRHDGKVIVKIDAIAASAASLIAMAGDEIE--MPLGTLL 135

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++H+PSG   G A D  R A  +  +     ++Y +  G + +E+ + +  +  M+  EA
Sbjct: 136 MIHEPSGMTLGPADDHRRTAGVLDTMTGVFAQVYAERTGLSEKEIRQMMKDETWMAPQEA 195

Query: 196 CDWGVVDKV 204
              G    V
Sbjct: 196 LANGFATSV 204


>gi|254304018|ref|ZP_04971376.1| endopeptidase Clp [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
 gi|148324210|gb|EDK89460.1| endopeptidase Clp [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
          Length = 236

 Score = 87.2 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 71/167 (42%), Gaps = 15/167 (8%)

Query: 45  VFVTGQIEDHMATLICAQLLFLE-----------AENPQKEISLYINSPGGVVTAGMAIY 93
           +++ G I          +   LE           A     E+ ++INS GG V AG+AI 
Sbjct: 17  IYINGDIVSDSDNDGFYEFFDLENPNVYPLDVANALKEAGEVHVHINSYGGDVFAGVAIS 76

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           + ++  K     +  G +AS  S++    ++       NA +++H+ S G  G A D  +
Sbjct: 77  NMLKNHKGKTIAYVDGLSASSASIIAFGCKEI--VIPDNAYLMIHRVSCGMFGNADDFLK 134

Query: 154 HAQDIVKIKRRLNEIYVKNC--GKTYEEVEKTLDRDHIMSASEACDW 198
             + + KI+  +   Y++    G T E++   +  +   +  +  ++
Sbjct: 135 QIEVMEKIEDGIINTYMEKAIEGVTREQIYDLMKSETWFTGKDCLNY 181


>gi|73852602|ref|YP_293886.1| putative ATP-dependent protease proteolytic subunit [Emiliania
           huxleyi virus 86]
 gi|72415318|emb|CAI65555.1| putative ATP-dependent protease proteolytic subunit [Emiliania
           huxleyi virus 86]
          Length = 238

 Score = 86.8 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 71/133 (53%), Gaps = 2/133 (1%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYI+S GG + AG + +  ++    P+ T   G  AS  + LL AG    R+ +P++ +L
Sbjct: 107 LYIHSCGGDLFAGFSAFSLIRRNVIPVVTIADGYVASAATFLLLAGS--YRYIVPSSHVL 164

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQ S G  G+  +IE   ++  +I  R++ +Y +        ++K L  +  ++  +  
Sbjct: 165 IHQLSTGGYGKFQEIEDDYKNCKRIMERMHALYKEETWLPSAILKKLLKSELDLTDDKCV 224

Query: 197 DWGVVDKVLMSRI 209
            +G+V+++L + +
Sbjct: 225 KYGIVNELLPTEL 237


>gi|295096776|emb|CBK85866.1| Protease subunit of ATP-dependent Clp proteases [Enterobacter
          cloacae subsp. cloacae NCTC 9394]
          Length = 69

 Score = 86.8 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/61 (73%), Positives = 56/61 (91%)

Query: 16 LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
          + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI AQ+LFLEAENP+K  
Sbjct: 1  MALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKTF 60

Query: 76 S 76
          +
Sbjct: 61 T 61


>gi|171913657|ref|ZP_02929127.1| ATP-dependent Clp protease proteolytic subunit [Verrucomicrobium
           spinosum DSM 4136]
          Length = 462

 Score = 86.8 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 3/146 (2%)

Query: 40  LKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN-SPGGVVTAGMAIYDTMQF 98
           + +R + + G I    A  + A++ +    + +  I L I+ SPGG V AG  I   MQ 
Sbjct: 215 MSDRRIALNGPISMRTADNVIARINYFNNRDAKLPIFLVIDDSPGGSVMAGYKIVKAMQG 274

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
            + P+       AASM + + +  +    +A  N  IL HQ      G  +  +   +++
Sbjct: 275 SQAPVHVVVKSFAASMAACIATVAKH--SYAYSNTVILHHQIHSFAGGNLTQQQEWLKEM 332

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTL 184
            +  RRL +      G + EE+ K +
Sbjct: 333 EEWWRRLADPVAVKMGISREELIKQM 358


>gi|307692908|ref|ZP_07635145.1| peptidase S14, ClpP [Ruminococcaceae bacterium D16]
          Length = 406

 Score = 86.8 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 77/163 (47%), Gaps = 4/163 (2%)

Query: 46  FVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIST 105
           + TG+ E  +     + +  L A   +  I++ INS GG +  G+AI++ ++ +      
Sbjct: 49  WWTGEPEPGLYIAPESFMEDLAAVKGKSNITIKINSCGGDLYTGIAIHNAIKGLTGHKVV 108

Query: 106 FCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS--DIERHAQDIVKIKR 163
              G AAS  S++  AG++   +  P + +++H  +G      +  D+++  +D    +R
Sbjct: 109 VVEGIAASAASVIACAGDEVQVY--PGSMVMIHGVAGLLYDYYTLADLKKLQKDFDASER 166

Query: 164 RLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
            + EIY    G   +++   + R+  M   EA D G  D +L 
Sbjct: 167 AIAEIYHAKTGLEVDQLRSMMTRETWMVGQEAIDNGFADTLLT 209


>gi|283481346|emb|CAZ69462.1| putative ATP-dependent protease proteolytic subunit [Emiliania
           huxleyi virus 99B1]
          Length = 238

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 71/133 (53%), Gaps = 2/133 (1%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYI+S GG + AG + +  ++    P+ T   G  AS  + +L AG    R+ +P++ +L
Sbjct: 107 LYIHSCGGDLFAGFSAFSLIRRNVIPVVTIADGYVASAATFMLLAGS--YRYIVPSSHVL 164

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEAC 196
           +HQ S G  G+  +IE   ++  +I  R++ +Y +        ++K L  +  ++  +  
Sbjct: 165 IHQLSTGGYGKFQEIEDDYKNCKRIMERMHALYKEETWLPPAILKKLLKSELDLTDDKCV 224

Query: 197 DWGVVDKVLMSRI 209
            +G+V+++L + +
Sbjct: 225 KYGIVNELLPTEL 237


>gi|242345576|ref|YP_002995462.1| hypothetical protein M102_gp05 [Streptococcus phage M102]
 gi|154238317|emb|CAO77355.1| hypothetical protein [Streptococcus phage M102]
          Length = 298

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 81/175 (46%), Gaps = 7/175 (4%)

Query: 41  KERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
            E  + + G  +  +A  I +     +  N + +I+L +NS GG   AG  IY  ++   
Sbjct: 15  NEASMLLGGITDYTIAEDIIS-----DIRNSEDDITLILNSGGGSYFAGAEIYSELKASN 69

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
              + +    A S  ++L     K  R    +A+++ HQ + G  G++ D++  +Q +  
Sbjct: 70  QKSTAYIASLAGSASAILAMGATK--RVISESAQLMFHQSAIGAFGKSQDLKEVSQMLDS 127

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
           I   + E+   N   T +E +  +  D+ + A  A D  +VD++ + +++ E + 
Sbjct: 128 IDAGIAEVLTANSSLTKDEAKDFISTDNFVDAQRALDLKLVDEIGLVKVNAEAQD 182


>gi|228998550|ref|ZP_04158137.1| Clp protease [Bacillus mycoides Rock3-17]
 gi|228761018|gb|EEM09977.1| Clp protease [Bacillus mycoides Rock3-17]
          Length = 221

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 71/163 (43%), Gaps = 6/163 (3%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPI 103
            +      +   ++ +  QL  + A    K I++++NS GG V   +AI + ++     I
Sbjct: 4   TISAYSWYDGISSSKVREQLKNITA----KTINVHVNSGGGDVFESIAISNLLKNHSAQI 59

Query: 104 STFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKR 163
                G AAS  S++  A +K       N  +++H+     +G A  + + A  + KI  
Sbjct: 60  VIHIDGLAASGASVIAMAADKI--IMPKNTMMMIHRAWTYAAGNAEGLRKVADRLDKIDT 117

Query: 164 RLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
            + E Y         E+E+ L  +  ++A E   +G  D+++ 
Sbjct: 118 AVTESYTSRFVGERTELEELLAEETWLTAEECKTFGFCDEIVD 160


>gi|134299068|ref|YP_001112564.1| peptidase S14, ClpP [Desulfotomaculum reducens MI-1]
 gi|134051768|gb|ABO49739.1| peptidase S14, ClpP [Desulfotomaculum reducens MI-1]
          Length = 300

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 38/78 (48%)

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
           +  P   +++H P    +G+A D+   A  + +IK  +   Y    G++  ++ K +D +
Sbjct: 7   YMSPVGIMMIHNPWTRVAGEAKDMNHAADVLNEIKDSIITAYQMKTGRSRSKISKMMDNE 66

Query: 188 HIMSASEACDWGVVDKVL 205
             MSA  A   G +D +L
Sbjct: 67  TWMSAKTAMAEGFIDGIL 84


>gi|228966919|ref|ZP_04127959.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228792772|gb|EEM40334.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar sotto str. T04001]
          Length = 184

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 64/130 (49%), Gaps = 2/130 (1%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I++ +NSPGG V  G+AIY+ ++     I     G AAS  S++  A ++        + 
Sbjct: 9   ININLNSPGGDVFDGIAIYNQLKNHPAKIIINVDGLAASAASIIAMAADEL--IMNTGSM 66

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           +++H+ S    G   DI +    +  I + L +IY+        E+E  +  +   +A+E
Sbjct: 67  LMIHEASTWTWGTKLDIRKTLNALEGIDKSLADIYMTRYQGERSEIETMIANETWFTANE 126

Query: 195 ACDWGVVDKV 204
           A ++G+  KV
Sbjct: 127 AVEFGLAHKV 136


>gi|229061550|ref|ZP_04198894.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           AH603]
 gi|228717784|gb|EEL69434.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           AH603]
          Length = 184

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 64/130 (49%), Gaps = 2/130 (1%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I++ +NSPGG V  G+AIY+ ++     I     G AAS  S++  A ++        + 
Sbjct: 9   ININLNSPGGDVFDGIAIYNQLKNHPAKIIINVDGLAASAASIIAMAADEL--IMNTGSM 66

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           +++H+ S    G   DI +    +  I + L +IY+        E+E  +  +   +A+E
Sbjct: 67  LMIHEASTWTWGTKLDIRKTLNALEGIDKSLADIYMTRYQGERTEIETMIANETWFTANE 126

Query: 195 ACDWGVVDKV 204
           A ++G+  KV
Sbjct: 127 AVEFGLAHKV 136


>gi|242373431|ref|ZP_04819005.1| S14 family endopeptidase ClpP [Staphylococcus epidermidis
           M23864:W1]
 gi|242348794|gb|EES40396.1| S14 family endopeptidase ClpP [Staphylococcus epidermidis
           M23864:W1]
          Length = 249

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 64/132 (48%), Gaps = 2/132 (1%)

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
             +++ + INS GG V +G  IY T++     ++   +G AAS  S++  AG+       
Sbjct: 39  DNEDLEVIINSGGGDVYSGSEIYTTLKAYPGKVNVKVVGVAASAASVIAMAGDHVE--MS 96

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           P A++++H       G ++ + + ++ +    R +   Y+   G + E +   ++ +  +
Sbjct: 97  PTAQMMIHNAWTVAIGDSNGMSKASEMLSGTNRGIANAYIAKTGLSEETILNLMNEETWL 156

Query: 191 SASEACDWGVVD 202
           +A +A + G  D
Sbjct: 157 NAQDAVEKGFAD 168


>gi|196232547|ref|ZP_03131399.1| peptidase S14 ClpP [Chthoniobacter flavus Ellin428]
 gi|196223309|gb|EDY17827.1| peptidase S14 ClpP [Chthoniobacter flavus Ellin428]
          Length = 439

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 42/174 (24%), Positives = 75/174 (43%), Gaps = 12/174 (6%)

Query: 40  LKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN-SPGGVVTAGMAIYDTMQF 98
           L +R + + G I    A  +C+++ +   +N    I + I+ SPGG V AG  I ++M  
Sbjct: 202 LTDRRIPLNGLISPATADFVCSRIDYFNNKNKDWPIFIVIDDSPGGSVMAGNKILESMHS 261

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
              P+       AASM + + +   +   +A PNA IL HQ S G  G  ++     +++
Sbjct: 262 STAPVYVVVKTFAASMAATIATLAPR--SYAYPNAVILHHQISNGMMGNLTEQREGLKNL 319

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTL-------DRDHIMSASEACDWGVVDKVL 205
            +  +R+        G + ++  K +       D        EA     +D V+
Sbjct: 320 EQWWKRMATPIAAKMGISTDDFVKQMYTHAASGDWQEF--GDEAVKLKWIDMVV 371


>gi|70729377|ref|YP_259115.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
           fluorescens Pf-5]
 gi|68343676|gb|AAY91282.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
           fluorescens Pf-5]
          Length = 380

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 71/163 (43%), Gaps = 7/163 (4%)

Query: 45  VFVTGQIEDH--MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           VFV G+I      A      L  L+  +    + +  NS GG +  G+A+++ +  +   
Sbjct: 40  VFVYGEIGAWGVTANQFVQDLRALD--DGVSPVVVAFNSIGGDLFDGLAMHNALSRLGER 97

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIK 162
            +      AAS  S+ +    + +  A  NA +++H P    +G A D  + A  + +  
Sbjct: 98  CTGRVDALAASAASVAVCGAHRVVIAA--NAMLMIHNPWTYAAGDAGDFRKVADVLDQTL 155

Query: 163 RRLNEIY-VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             +   Y  K       E+ + +D +  ++A+EA   G+ D+V
Sbjct: 156 EAIIAAYKSKAPDIDDAELRRLVDAETWLTANEAVALGLADEV 198


>gi|313768387|ref|YP_004062067.1| hypothetical protein MpV1_184c [Micromonas sp. RCC1109 virus MpV1]
 gi|312599083|gb|ADQ91107.1| hypothetical protein MpV1_184c [Micromonas sp. RCC1109 virus MpV1]
          Length = 189

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 68/163 (41%), Gaps = 11/163 (6%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQK---------EISLYINSPGGVVTAGMAIYDT 95
           +   G I+   A     +   LE +  +K         +I ++I S GG + AG+ + + 
Sbjct: 22  ILFYGDIDRENALEFVEKFKKLEIDLLKKMAELVGYEPQIRVHIMSDGGDIFAGLNMMNV 81

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           ++  +  + T   G   S  + +   G +  R    NA +L+HQ S  F G   +++   
Sbjct: 82  LERSRVKVITIAQGSCCSAATFVFLGGSE--RRMGRNAYLLIHQISTEFWGNFQELKTEM 139

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           +   K    L ++Y+       ++ ++ + +D  ++  +   +
Sbjct: 140 KSTEKFMNMLKKMYLSKTKIPEKKFKRLMKKDIYLTPEKCIKY 182


>gi|66395463|ref|YP_239801.1| ORF013 [Staphylococcus phage 2638A]
 gi|62635890|gb|AAX91001.1| ORF013 [Staphylococcus phage 2638A]
          Length = 299

 Score = 84.9 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 72/164 (43%), Gaps = 3/164 (1%)

Query: 41  KERIVFVTGQI-EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
             +I+ + G +  D     I  + +    +   K I + + S GG    G+ IY+ ++ +
Sbjct: 42  DTQILTLNGVVASDDFENTISHKKIEAALKGSDKNIVIKLASGGGDAFEGINIYNYLKSL 101

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIV 159
           K  ++      AAS  S++  AG+K +     N  +++H+ S    G  +DI +    + 
Sbjct: 102 KNHVTIEITSIAASAASIIAMAGDKIVMHTGSN--MMIHEASTFAFGSKTDIRKTLNALE 159

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            + + + ++Y    G    E+   + ++  M+A EA      D+
Sbjct: 160 SVDKSIVDVYYNRTGVDKNEIIDMMAKETWMTADEAIKQKFADE 203


>gi|83641941|emb|CAJ46674.1| ATP-dependent Clp protease proteolytic subunit [Nicotiana
           glutinosa]
          Length = 66

 Score = 84.5 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 36/63 (57%)

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
             +  Q  +    A++++K++  L  +YV+  GK    V + ++RD  MSA+EA  +G+V
Sbjct: 1   SFYEAQTGEFVLEAEELLKLRETLTRVYVQRTGKPLWVVSEDMERDVFMSATEAQAYGIV 60

Query: 202 DKV 204
           D V
Sbjct: 61  DLV 63


>gi|254510472|ref|ZP_05122539.1| peptidase S14, ClpP [Rhodobacteraceae bacterium KLH11]
 gi|221534183|gb|EEE37171.1| peptidase S14, ClpP [Rhodobacteraceae bacterium KLH11]
          Length = 342

 Score = 84.5 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 64/143 (44%), Gaps = 5/143 (3%)

Query: 55  MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASM 114
            A  +   L  L       ++++ INS GG    G+AIY+ +   +  +       AAS 
Sbjct: 25  TAMQVIDALAML---GRDADVTVRINSGGGYTDDGIAIYNALTAHRGSVDVIVDAIAASS 81

Query: 115 GSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCG 174
            S++  AG+     +   A +++H P+    G A D E+  + + K+   + +IY +  G
Sbjct: 82  ASIIAMAGDTITMRS--GALMMIHDPARFTWGDAGDHEKSTEQLNKLADLMADIYAEQTG 139

Query: 175 KTYEEVEKTLDRDHIMSASEACD 197
           +   ++ K +  +  ++  EA  
Sbjct: 140 EDAADIRKEMKDELWLTGKEAVA 162


>gi|167754301|ref|ZP_02426428.1| hypothetical protein ALIPUT_02594 [Alistipes putredinis DSM 17216]
 gi|167658926|gb|EDS03056.1| hypothetical protein ALIPUT_02594 [Alistipes putredinis DSM 17216]
          Length = 418

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 75/179 (41%), Gaps = 17/179 (9%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
           +   G+I +  A        FLE       I + INS GG V  GM +Y  +Q    P  
Sbjct: 21  IRFFGRITEESAGRFSEAFDFLENIVRPSLIRVLINSEGGSVLHGMTVYAAIQNASVPTE 80

Query: 105 TFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS--GQASDIERHAQDIVKIK 162
               G AASMGS++ +AG+K   F      +++H P       G+ S++ +         
Sbjct: 81  CVIEGMAASMGSVIWAAGDK--SFMRDYGILMIHNPFLPDENDGEPSELVKA------FT 132

Query: 163 RRLNEIYVKNCGKTYEEVEKTLD-----RDHIMSASEACDWGVV--DKVLMSRIDIEEK 214
            ++  IY K  G ++E+V   +D           A+ A   G++    VL +   + +K
Sbjct: 133 AQIETIYRKRFGLSHEKVRAIMDGAAGQDGTFFDAAAAVKAGIIPESHVLRTSKQLRDK 191


>gi|320161811|ref|YP_004175036.1| peptidase S14, ClpP family protein [Anaerolinea thermophila UNI-1]
 gi|319995665|dbj|BAJ64436.1| peptidase S14, ClpP family protein [Anaerolinea thermophila UNI-1]
          Length = 196

 Score = 84.1 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 78/169 (46%), Gaps = 6/169 (3%)

Query: 41  KERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           +ER V     +      L+   LL     +  + + L +++PGG V+ G+ +Y  ++ + 
Sbjct: 3   RERWVQFFAPVNGESFGLLV-NLLQNAVLDGTERVHLLLSTPGGTVSYGLTLYALLRGLP 61

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG---QASDIERHAQD 157
             + T+ +GQ  S+G ++  AG++  R A P  R LLH               +     +
Sbjct: 62  IEVWTYNVGQVDSIGVVVYCAGKR--RLAAPQTRFLLHGIRTPLERGVYTTEQLREIVGE 119

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           +   +R +  +  ++ G+  E+VE+ L     +   +A ++ +VD+++ 
Sbjct: 120 METDQRNICRVLAESTGQALEKVERDLFHALTLLPEQAREYRLVDEIVT 168


>gi|213621477|ref|ZP_03374260.1| hypothetical protein SentesTyp_29737 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 51

 Score = 84.1 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 35/50 (70%)

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           +K+K R+NE+   + G++ E++E+  +RD  +SA EA ++G+VD +L  R
Sbjct: 1   MKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHR 50


>gi|145295969|ref|YP_001138790.1| hypothetical protein cgR_1893 [Corynebacterium glutamicum R]
 gi|57158127|dbj|BAD84096.1| ClpP protease family protein [Corynebacterium glutamicum]
 gi|140845889|dbj|BAF54888.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 459

 Score = 84.1 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 1/138 (0%)

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           ++   +  +++ INS GG V  G  I   +      ++    G AAS  S++  AG   +
Sbjct: 20  DSLPDEGPVTVRINSFGGAVDVGHTIRHLLADHPGHVTCVVDGVAASAASIIAIAGSDEL 79

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
                 + +++HQ S G  G +S +   A+ + K+   L  +Y    G   E     +  
Sbjct: 80  -VMREGSELMIHQASLGMDGNSSSLRSMAERLEKMDAELANVYASKAGGDAEHWLGLMAA 138

Query: 187 DHIMSASEACDWGVVDKV 204
           +   SA++A D G+ D+V
Sbjct: 139 ETWFSAADAVDAGLADRV 156


>gi|77413458|ref|ZP_00789649.1| ClpP protease family protein [Streptococcus agalactiae 515]
 gi|77160473|gb|EAO71593.1| ClpP protease family protein [Streptococcus agalactiae 515]
          Length = 243

 Score = 83.8 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 2/134 (1%)

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
               +I + INS GG V AG  IY  ++  +  ++   +G AAS  S++  AG+  +   
Sbjct: 36  QDNSDIEVLINSGGGDVYAGSEIYTALKSYQGNVTVKIVGIAASAASVIAMAGD--VVEI 93

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
            P A++++H  S   SG    +   A  +      +   YV        E+   +  +  
Sbjct: 94  SPTAQLMIHNVSTTVSGDHKQMLHEAGVLENYNISIANAYVNKTDLEMNELLDLMSTETW 153

Query: 190 MSASEACDWGVVDK 203
            +A +A + G  DK
Sbjct: 154 FNAQQAVEKGFADK 167


>gi|225159289|ref|ZP_03725589.1| peptidase S14 ClpP [Opitutaceae bacterium TAV2]
 gi|224802142|gb|EEG20414.1| peptidase S14 ClpP [Opitutaceae bacterium TAV2]
          Length = 478

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/181 (24%), Positives = 81/181 (44%), Gaps = 9/181 (4%)

Query: 42  ERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN-SPGGVVTAGMAIYDTMQFIK 100
           +R + + G I    A  I  ++ +   +N +  I + I+ SPGG V AG  I   M+   
Sbjct: 244 DRRIPLNGPISMRTADRIQERIDYFNNQNTEYPIFIVIDASPGGSVMAGYKILKAMEGSA 303

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
            P+ T     AASM + + +  ++   +A PNA +L HQ      G  ++     +++ +
Sbjct: 304 APVYTVVKSFAASMAAGITTLSKQ--SYAYPNAILLHHQIWTSSGGNLTEQREGVRELEE 361

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTL--DR---DHIMSASEACDWGVVDKVLMS-RIDIEEK 214
             RRL        G   E+  K +  +R   D I    +A D   VD ++ + R +  ++
Sbjct: 362 WWRRLAAPIAAKMGIGLEDFIKQMYANRSTGDWIAFGDKARDLKWVDHIVTTIREESYDR 421

Query: 215 S 215
           +
Sbjct: 422 N 422


>gi|255565800|ref|XP_002523889.1| conserved hypothetical protein [Ricinus communis]
 gi|223536819|gb|EEF38458.1| conserved hypothetical protein [Ricinus communis]
          Length = 78

 Score = 83.0 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 134 RILLHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           R+++HQP +G +  Q  +    A++++K+   L  IY +  GK    V + ++RD  MSA
Sbjct: 4   RVMIHQPIAGFYEAQIGEFVLEAEELLKLHEILTRIYAQRMGKPLWVVSEDMERDVFMSA 63

Query: 193 SEACDWGVVDKV 204
           +EA   G+VD V
Sbjct: 64  AEAQAHGIVDLV 75


>gi|229140600|ref|ZP_04269155.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           BDRD-ST26]
 gi|228643161|gb|EEK99437.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           BDRD-ST26]
          Length = 164

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 55/111 (49%), Gaps = 4/111 (3%)

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
           MAIY+ ++  +   +    G   S+ S++  AG+K       NA +++H+P  G  G A+
Sbjct: 1   MAIYNMIKRHEGYKTVHIDGLGGSIASVIAFAGDKL--IVPSNAYLMIHKPWNGTYGNAN 58

Query: 150 DIERHAQDIVKIKRRLNEIYVKNC--GKTYEEVEKTLDRDHIMSASEACDW 198
           D  + A D+  I+  +  +Y  N   G   EE+ + +  +  ++  +A ++
Sbjct: 59  DFRKMADDLDAIEEGIINVYKDNLKEGVDIEEIREMVQNETWLNGLKASEY 109


>gi|319745831|gb|EFV98124.1| S14 family endopeptidase ClpP [Streptococcus agalactiae ATCC 13813]
          Length = 243

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 2/134 (1%)

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
               +I + INS GG V AG  IY  ++  +  ++   +G AAS  S++  AG+  +   
Sbjct: 36  QDNSDIEVLINSGGGDVYAGSEIYTALKSYQGNVTVKIVGIAASAASVIAMAGD--VVEI 93

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
            P A++++H  S   SG    +   A  +      +   YV        E+   +  +  
Sbjct: 94  SPTAQLMIHNVSTTVSGDHKQMLHEAGVLENYNISIANAYVNKTDLEMNELLDLMSTETW 153

Query: 190 MSASEACDWGVVDK 203
            +A +A + G  DK
Sbjct: 154 FNAQQAIEKGFADK 167


>gi|218889559|ref|YP_002438423.1| chaperone with DnaK; heat shock protein [Pseudomonas aeruginosa
           LESB58]
 gi|218769782|emb|CAW25542.1| chaperone with DnaK; heat shock protein [Pseudomonas aeruginosa
           LESB58]
          Length = 578

 Score = 82.6 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 40/72 (55%)

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           NA +++H+P G   G+A D+ R+A  + KI+  +   Y+   GK+ E+++  L  +  M 
Sbjct: 11  NAMMMVHRPWGIQGGEADDMRRYADLLEKIEGTMVAAYMAKTGKSEEDIKALLKAETWMD 70

Query: 192 ASEACDWGVVDK 203
             EA + G  D+
Sbjct: 71  GREAVEAGFADQ 82


>gi|149192589|ref|ZP_01870749.1| ATP-dependent Clp protease proteolytic subunit [Vibrio shilonii
          AK1]
 gi|148833577|gb|EDL50654.1| ATP-dependent Clp protease proteolytic subunit [Vibrio shilonii
          AK1]
          Length = 69

 Score = 82.6 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 48/71 (67%), Positives = 58/71 (81%), Gaps = 2/71 (2%)

Query: 1  MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
          MS++   K     +   LVPMVVEQT+RGERSYDIYSRLLKERI+F+TGQ+ED+MA LI 
Sbjct: 1  MSYQ--EKNAMSPIMNALVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDNMANLIV 58

Query: 61 AQLLFLEAENP 71
          AQ+LFLE+ENP
Sbjct: 59 AQMLFLESENP 69


>gi|325281222|ref|YP_004253764.1| peptidase S14 ClpP [Odoribacter splanchnicus DSM 20712]
 gi|324313031|gb|ADY33584.1| peptidase S14 ClpP [Odoribacter splanchnicus DSM 20712]
          Length = 357

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 60/161 (37%), Gaps = 26/161 (16%)

Query: 67  EAENPQKEISLYIN------------SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASM 114
           E     + I  Y+N            S GG     + I D        ++    G AAS 
Sbjct: 14  EWGYSNRYIKSYLNAAGKNPVICHVCSGGGDFLMAINIKDQFAAHGS-VTVDISGYAASA 72

Query: 115 GSLLLSAGEKGMRFALPNARILLH--QPSGGFSG-----QASDI----ERHAQDIVKIKR 163
            +L+   G K  R +  ++  L+H         G     Q SD+    E+   +  K+  
Sbjct: 73  ATLI-GLGAKHTRISN-SSFYLIHKVMSWVNAWGGMNEDQISDLITHLEKVKDENEKMTL 130

Query: 164 RLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
              + Y    GK   E+   +  +  ++A EA +WG VD+V
Sbjct: 131 VAAKAYADRSGKPVLEILNLMKEEKWLTADEAKEWGFVDEV 171


>gi|187933709|ref|YP_001885481.1| Clp protease [Clostridium botulinum B str. Eklund 17B]
 gi|187721862|gb|ACD23083.1| Clp protease family protein [Clostridium botulinum B str. Eklund
           17B]
          Length = 232

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  QL+ LE  +  K I + +N+ GG V AG+AI + ++ +  P  +   G   S+G 
Sbjct: 66  EHIIPQLIDLEQNDNVKGILIVLNTVGGDVEAGLAIAEMIRSMSKPTVSIVTGGGHSIGV 125

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L +A +    F  P+A +++H      +G    + +  +   K++ R+NE   +     
Sbjct: 126 PLATASD--YSFITPSATMIVHPVR--MNGFIIGVAQTFEYFKKMQERINEFITRTSHIK 181

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
            EE+EK +        D   I+   +A D G++D+V
Sbjct: 182 EEELEKFMLQTNELLNDVGTILIGKQAVDCGLIDEV 217


>gi|258644603|dbj|BAI39853.1| ATP-dependent protease subunit-like [Oryza sativa Indica Group]
          Length = 144

 Score = 81.4 bits (200), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 34/70 (48%)

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
              +  +  +     +++ K++  +  +Y    GK +  V + ++RD  MSA EA  +G+
Sbjct: 58  RAYYRARTPEFLLEVEELHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEAKAYGL 117

Query: 201 VDKVLMSRID 210
           VD V    +D
Sbjct: 118 VDIVGDEMLD 127


>gi|299142816|ref|ZP_07035944.1| ClpP protease [Prevotella oris C735]
 gi|298575684|gb|EFI47562.1| ClpP protease [Prevotella oris C735]
          Length = 365

 Score = 81.4 bits (200), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 79/160 (49%), Gaps = 17/160 (10%)

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
            E+  +E+ + ++SPGG V AG+ IY  ++     ++   +G  AS  + L + G K + 
Sbjct: 34  NEHQDEEVDIAVSSPGGYVDAGLEIYQMIKDHG-KVNIHILGMTASAATFL-TMGAKSV- 90

Query: 128 FALPNARILLHQPSGGFS-GQASD-------IERHAQD---IVKIKRRLNEIYVKNCGKT 176
             +  + +L+H  S      Q+++       I ++ ++   +  I + +  +Y K  GK+
Sbjct: 91  DMVDGSLMLIHNASTAVREWQSANKEQLDALIAKYQKERDDLNTIDKVIASLYAKKNGKS 150

Query: 177 YEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
            +E    + +   +S S+A ++G++DK+   R D +   K
Sbjct: 151 VDECMDKMQKAAWLSPSDALEFGLIDKI---REDDDAARK 187


>gi|323449361|gb|EGB05250.1| hypothetical protein AURANDRAFT_9147 [Aureococcus anophagefferens]
          Length = 57

 Score = 81.4 bits (200), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 44/56 (78%)

Query: 54  HMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMG 109
            +A ++ AQLL+L  ++P K+I+LYINSPGG V+AGMAIYDTMQF+   +ST C G
Sbjct: 2   EVANVLVAQLLYLANDDPTKDITLYINSPGGSVSAGMAIYDTMQFVPCDVSTVCFG 57


>gi|308311770|gb|ADO27656.1| clpP [Rhizanthella gardneri]
          Length = 74

 Score = 81.4 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 134 RILLHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           R+++HQP S  +  Q  +    A++ +K++  + ++YV+   K    + K ++RD  MSA
Sbjct: 1   RVMIHQPASSFYESQVGEFILEAEEFLKLRETILKVYVQRTSKPLLVISKDIERDVFMSA 60

Query: 193 SEACDWGVVDKV 204
           +EA  +G+VD V
Sbjct: 61  NEALVYGIVDLV 72


>gi|153941528|ref|YP_001391156.1| putative Clp protease [Clostridium botulinum F str. Langeland]
 gi|152937424|gb|ABS42922.1| putative Clp protease [Clostridium botulinum F str. Langeland]
 gi|295319197|gb|ADF99574.1| putative Clp protease [Clostridium botulinum F str. 230613]
          Length = 247

 Score = 81.4 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 85/199 (42%), Gaps = 17/199 (8%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLL-FLEAENPQKEISLYI 79
              E  NR + + DIY  +  E    + G  +   + +        LE     + I++YI
Sbjct: 3   KFYEFKNRTDNNIDIY--VYGE---IIGGSEKWDESNVTFNDFKDNLEGLTGNETINMYI 57

Query: 80  NSPGGVVTAGMAIYDTMQFIKPP---ISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           NS GG VT    I   +Q  K     I+    G  AS  S L    +    +A  ++ ++
Sbjct: 58  NSVGGSVTTTQGIIAMLQRAKEKGVTINATIDGIGASCASFLPLVAD--NVYAYKSSLLM 115

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRR-LNEIYVKNC--GKTYEEVEKTLDRDHIMSAS 193
           +H P     G   ++++    + KI+   +  +Y+     G T ++++  +D++  ++A 
Sbjct: 116 VHHPYTLCIGNVDELQKQIDLLNKIENSVMMPLYLNKAKEGITKDKIKNLVDKETWLNAK 175

Query: 194 EACD-WGVVDKVLMSRIDI 211
           E  + + +  ++L    D+
Sbjct: 176 EMSEIFNI--EILEDDKDL 192


>gi|255557516|ref|XP_002519788.1| conserved hypothetical protein [Ricinus communis]
 gi|223541027|gb|EEF42584.1| conserved hypothetical protein [Ricinus communis]
          Length = 82

 Score = 81.4 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 127 RFALPNARILLHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
            F     R+++HQP +G +  Q  +     ++++K+   L  IY +  GK    V + ++
Sbjct: 1   MFLFDKKRVMIHQPIAGFYEAQIGEFVLEVEELMKLCEILTRIYAQRMGKPLWVVSEDME 60

Query: 186 RDHIMSASEACDWGVVDKV 204
           +D  MSA EA   G+VD V
Sbjct: 61  KDVFMSAVEAQAHGIVDLV 79


>gi|295108195|emb|CBL22148.1| Protease subunit of ATP-dependent Clp proteases [Ruminococcus obeum
           A2-162]
          Length = 87

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 3/68 (4%)

Query: 136 LLHQPSGG---FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           ++HQPS       GQA+DI+  +  + K K RLN I  +N G+T EEV    +R + +SA
Sbjct: 1   MIHQPSIHRNGVQGQATDIKIVSDQLQKSKLRLNRILAENTGRTIEEVVMATERYNFLSA 60

Query: 193 SEACDWGV 200
            EA D+G+
Sbjct: 61  GEALDFGL 68


>gi|251780299|ref|ZP_04823219.1| Clp protease family protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243084614|gb|EES50504.1| Clp protease family protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 232

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 74/156 (47%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  QL+ LE  +  K + + +N+ GG V AG+AI + ++ +  P  +   G   S+G 
Sbjct: 66  EHIIPQLIDLEQNDNVKGVLIVLNTVGGDVEAGLAIAEMIRSMSKPTVSIVTGGGHSIGV 125

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L +A +    F  P+A +++H      +G    + +  +   K++ R+NE   +     
Sbjct: 126 PLATASD--YSFITPSATMIVHPVR--MNGFIIGVAQTFEYFKKMQERINEFITRTSHIK 181

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
            EE+EK +        D   I+   +A + G++D+V
Sbjct: 182 EEELEKFMLQTNELLNDVGTILIGKQAVECGLIDEV 217


>gi|188589517|ref|YP_001920628.1| Clp protease [Clostridium botulinum E3 str. Alaska E43]
 gi|188499798|gb|ACD52934.1| Clp protease family protein [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 232

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 74/156 (47%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  QL+ LE  +  K + + +N+ GG V AG+AI + ++ +  P  +   G   S+G 
Sbjct: 66  EHIIPQLIDLEQNDNVKGVLIVLNTVGGDVEAGLAIAEMIRSMSKPTVSIVTGGGHSIGV 125

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L +A +    F  P+A +++H      +G    + +  +   K++ R+NE   +     
Sbjct: 126 PLATASD--YSFITPSATMIVHPVR--MNGFIIGVAQTFEYFKKMQERINEFITRTSHIK 181

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
            EE+EK +        D   I+   +A + G++D+V
Sbjct: 182 EEELEKFMLQTNELLNDVGTILIGKQAVECGLIDEV 217


>gi|297619361|ref|YP_003707466.1| peptidase S14 ClpP [Methanococcus voltae A3]
 gi|297378338|gb|ADI36493.1| peptidase S14 ClpP [Methanococcus voltae A3]
          Length = 190

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 71/133 (53%), Gaps = 8/133 (6%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L I+SPGG VTAG++ Y+ ++ I   ++T   G   S+G ++  AG++  R+A P +R L
Sbjct: 46  LLISSPGGDVTAGLSAYNYLKGIPAYVTTHNFGSVDSIGIVIFCAGQE--RYASPQSRFL 103

Query: 137 LHQPSGGFSGQAS----DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK-TLDRDHIMS 191
           +H     FS  ++    DIE   + +      ++++   N      ++++  L+R   ++
Sbjct: 104 IHDVRSVFSSTSNLGEKDIEERLKSLKVDMENISKVISSNSNLEASQIQEFMLERTT-LN 162

Query: 192 ASEACDWGVVDKV 204
             EA + G++ ++
Sbjct: 163 PEEAVNMGLITEI 175


>gi|149010630|ref|ZP_01832001.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae SP19-BS75]
 gi|149013225|ref|ZP_01834011.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           pneumoniae SP19-BS75]
 gi|147762976|gb|EDK69921.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptococcus
           pneumoniae SP19-BS75]
 gi|147765111|gb|EDK72040.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae SP19-BS75]
          Length = 61

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 35/57 (61%)

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           +   A+ ++K +  L +I  +N G++ E+V    +RD+ MSA E  ++G +D+++ +
Sbjct: 1   MAIAAEHLLKTRNTLEKILAENSGQSMEKVHADAERDNWMSAQETLEYGFIDEIMAN 57


>gi|1168975|sp|P42379|CLPP_CHLMO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
           AltName: Full=Endopeptidase Clp; Contains: RecName:
           Full=Ceu clpP intein; AltName: Full=Insertion IS2
 gi|575471|gb|AAA84150.1| clpP subunit of Clp protease [Chlamydomonas moewusii]
          Length = 1010

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 39/68 (57%)

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
               GQASDI   +Q+I+KI+  + EIY     +   ++ + LDRD  ++A+E   +G+ 
Sbjct: 904 SSIQGQASDIWIDSQEIMKIRLDVAEIYSLATYRPRHKILRDLDRDFYLTATETIHYGLA 963

Query: 202 DKVLMSRI 209
           D++  + +
Sbjct: 964 DEIASNEV 971



 Score = 43.7 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 42/77 (54%)

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           E   K++ + INS GG V  G+ ++D +QFIK    T  +G AAS  SL L+ G  G R+
Sbjct: 375 EEESKKVFVIINSFGGSVGNGITVHDALQFIKAGSLTLALGVAASAASLALAGGTIGERY 434

Query: 129 ALPNARILLHQPSGGFS 145
                 +++HQP    S
Sbjct: 435 VTEGCHVMIHQPECLTS 451



 Score = 37.2 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 25/44 (56%)

Query: 31 RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
          +  DIY+ + + R+VF+   ++D +   IC  L+ +  E+  KE
Sbjct: 19 QWTDIYNFIFRRRMVFLMQYLDDELCNQICGLLINIHMEDRSKE 62


>gi|126470033|dbj|BAF48118.1| hypothetical protein [Rhodococcus rhodochrous]
          Length = 133

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 54/109 (49%), Gaps = 2/109 (1%)

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
           +   I   C+G+    G  LL+A ++  R +  +    L +P   +SG A+D   + +  
Sbjct: 23  MGVEIHAICLGELVGAGVALLTAADR--RDSGVHTVFHLREPRTRYSGYAADAAAYTERQ 80

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
            +  + L+E     CG++ +E+   +    I++A +A D+G++D V  S
Sbjct: 81  QRHLQTLHERLAHICGRSVDEIAADMRNQRILTAEQARDYGLIDTVTES 129


>gi|156619231|gb|ABU88294.1| clp protease proteolytic subunit 2 [Chlamydomonas moewusii]
          Length = 1010

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 39/68 (57%)

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
               GQASDI   +Q+I+KI+  + EIY     +   ++ + LDRD  ++A+E   +G+ 
Sbjct: 904 SSIQGQASDIWIDSQEIMKIRLDVAEIYSLATYRPRHKILRDLDRDFYLTATETIHYGLA 963

Query: 202 DKVLMSRI 209
           D++  + +
Sbjct: 964 DEIASNEV 971



 Score = 43.7 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 42/77 (54%)

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           E   K++ + INS GG V  G+ ++D +QFIK    T  +G AAS  SL L+ G  G R+
Sbjct: 375 EEESKKVFVIINSFGGSVGNGITVHDALQFIKAGSLTLALGVAASAASLALAGGTIGERY 434

Query: 129 ALPNARILLHQPSGGFS 145
                 +++HQP    S
Sbjct: 435 VTEGCHVMIHQPECLTS 451



 Score = 37.2 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 25/44 (56%)

Query: 31 RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE 74
          +  DIY+ + + R+VF+   ++D +   IC  L+ +  E+  KE
Sbjct: 19 QWTDIYNFIFRRRMVFLMQYLDDELCNQICGLLINIHMEDRSKE 62


>gi|317480215|ref|ZP_07939322.1| hypothetical protein HMPREF1007_02439 [Bacteroides sp. 4_1_36]
 gi|316903597|gb|EFV25444.1| hypothetical protein HMPREF1007_02439 [Bacteroides sp. 4_1_36]
          Length = 478

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 78/178 (43%), Gaps = 16/178 (8%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
            + E ++ + G I+ +        L +   +   + + L ++S GG V   +A+   +  
Sbjct: 106 FMNETVITLFGTIDRYWYNK--NYLKYFLDKAKGQPVRLKVSSYGGDVAEAVAM-SALMA 162

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS--GGFSGQ--ASDIERH 154
               ++   +   AS  ++L + G K +     +   L H+ S      GQ  A  +E  
Sbjct: 163 EHGNVTVEFISFNASAATVL-AFGAKSIE-MHEDGMWLAHKCSLGVDIWGQLNADQLEDT 220

Query: 155 AQDIVKIKRR-------LNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            +++   K+        + + Y+   GK+ +++   ++ +  M A+EA +WG +DK++
Sbjct: 221 IKELQNKKKSAEAIDLMIAQKYINRSGKSLKDIITLMEEERWMPAAEAKEWGFIDKII 278


>gi|73658420|emb|CAI99002.1| ATP-dependent protease, catalytic subunit [Arabidopsis thaliana]
 gi|73658422|emb|CAI99003.1| ATP-dependent protease, catalytic subunit [Arabidopsis thaliana]
          Length = 63

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 35/61 (57%)

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
           +  Q  +    A++++K++  +  +YV+  GK    + + ++RD  MSA+EA   G+VD 
Sbjct: 1   YEAQTGEFILEAEELLKLRETITRVYVQRTGKPIWVISEDMERDVFMSATEAQAHGIVDL 60

Query: 204 V 204
           V
Sbjct: 61  V 61


>gi|229194208|ref|ZP_04321063.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           ATCC 10876]
 gi|228589269|gb|EEK47233.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           ATCC 10876]
          Length = 173

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 2/126 (1%)

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           +NSPGG V  G+AIY+ ++     I     G AAS  S++  A ++        + +++H
Sbjct: 1   MNSPGGDVFDGIAIYNQLKNHPAKIIINVDGLAASAASIIAMAADEL--IMNTGSMLMIH 58

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           + S    G   DI +    +  I + L +IY+        E+E  +  +   +A+EA + 
Sbjct: 59  EASTWTWGTKLDIRKTLNALEGIDKSLADIYMTRYQGERSEIETMIANETWFTANEAVEI 118

Query: 199 GVVDKV 204
           G+  KV
Sbjct: 119 GLAHKV 124


>gi|33337390|gb|AAQ13361.1|U68753_1 putative ATP-dependent protease proteolytic subunit, ClpP
           [Streptococcus pyogenes]
          Length = 77

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 37/58 (63%)

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           D+   A+ ++K + RL +I  +N GKT +++ K  +RD+ MSA E   +G +D+++ +
Sbjct: 16  DMAIAAEHLLKTRHRLEKILAQNAGKTIKQIHKDAERDYWMSAEETLAYGFIDEIMEN 73


>gi|224475988|ref|YP_002633594.1| putative Clp protease, phage associated [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|222420595|emb|CAL27409.1| putative Clp protease, phage associated [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 238

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 64/132 (48%), Gaps = 2/132 (1%)

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
             +++ + INS GG V +G  IY  ++     ++   +G AAS  S++  AG+       
Sbjct: 38  TNEDVEVIINSGGGEVMSGSEIYTALKSYAGNVNVKVVGVAASAASVIAMAGDTIE--MS 95

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           P A++++H  S    G    +   ++ +  + R +   Y+   GK+ +E+   ++ +  M
Sbjct: 96  PTAQMMIHNASTLAYGDDRAMASASKMLNSVNRGIANAYMNKTGKSEQEILDLMNEESWM 155

Query: 191 SASEACDWGVVD 202
           SA +A D G  D
Sbjct: 156 SAQDAVDLGFAD 167


>gi|109521505|ref|YP_655933.1| gp68 [Mycobacterium phage Wildcat]
 gi|91980957|gb|ABE67673.1| gp68 [Mycobacterium phage Wildcat]
          Length = 185

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 72/174 (41%), Gaps = 20/174 (11%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK---- 100
           + V+G++         A L   + E+P+    + IN PGG   +G A+Y+ +        
Sbjct: 17  LIVSGELNAESVDFYLATLFEWDQEDPEATWKILINCPGGETESGTALYEELCAYSRRGG 76

Query: 101 --PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
               I T   GQ ASM +LL+ AG+   R +      L H P  G       +   A D+
Sbjct: 77  GTHEIVTVAAGQCASMATLLMQAGD--WRVSGEATTWLFHMPETGVGETMQTMADAAADL 134

Query: 159 VKIKRRL---NEIYVKNCGKTYE----EVEKTLDRDHI-MSASEACDWGVVDKV 204
             +K+ +   + + ++    T +    ++   +      ++   A  +G VD+V
Sbjct: 135 DHLKKWMKITDAMLLERTNLTPDCYYKQITGGM----WLLTGHAAKTYGFVDEV 184


>gi|289578373|ref|YP_003477000.1| peptidase S14 ClpP [Thermoanaerobacter italicus Ab9]
 gi|297544650|ref|YP_003676952.1| peptidase S14 ClpP [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
 gi|289528086|gb|ADD02438.1| peptidase S14 ClpP [Thermoanaerobacter italicus Ab9]
 gi|296842425|gb|ADH60941.1| peptidase S14 ClpP [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
          Length = 233

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 69/156 (44%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  QL+ +E     K + + +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 62  EHIIPQLVAIEENPNIKGVLILLNTVGGDVEAGLAIAEMIASLSKPTVSIVLGGGHSIGV 121

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L  +      + +P+A + +H      +G    + +      K++ R+ E  V+N    
Sbjct: 122 PLAVSA--NYSYIVPSATMTIHPIR--MTGMVVGVPQTFDYFNKMQDRIVEFIVRNSKIK 177

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
            E   + +        D   I+   EA D+G++D++
Sbjct: 178 RETFMELMLKTGELANDIGTILVGKEAVDYGLIDEI 213


>gi|312599320|gb|ADQ91343.1| hypothetical protein BpV2_176c [Bathycoccus sp. RCC1105 virus BpV2]
          Length = 191

 Score = 78.4 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 60/131 (45%), Gaps = 3/131 (2%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           + +++ S GG + AG++  + ++  +  + T   G   S  + LL  G +  R    NA 
Sbjct: 62  MYVHVCSEGGDLFAGISAMNIIEKSRVKVVTIAQGVCCSAATFLLLGGHE--RRIGKNAH 119

Query: 135 ILLHQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           +L+HQ S   F G+  +++   +   K+   + + Y +      ++ +K + RD  +   
Sbjct: 120 VLIHQISTNGFWGKYEELKDEMKSCDKLMDMVTKTYKEKTTIPQKQFKKIMKRDVYLDPQ 179

Query: 194 EACDWGVVDKV 204
           E   + VV  +
Sbjct: 180 ECIKYNVVHSI 190


>gi|330974400|gb|EGH74466.1| peptidase S14, ClpP [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 148

 Score = 78.4 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            K  ++YINSPGG +  G+AIY+ ++    PI+T  +G AAS  S++  AG K  R    
Sbjct: 66  DKPATVYINSPGGDMFEGLAIYNRLREHSQPITTKVLGLAASAASVIYMAGAK--REVAS 123

Query: 132 NARILLHQPSGGFSGQASDIERHAQ 156
           +  +++H       G   D+   A 
Sbjct: 124 SGFLMIHNCWTLAVGNRHDLRDVAN 148


>gi|313768170|ref|YP_004061601.1| hypothetical protein BpV1_171c [Bathycoccus sp. RCC1105 virus BpV1]
 gi|312599777|gb|ADQ91798.1| hypothetical protein BpV1_171c [Bathycoccus sp. RCC1105 virus BpV1]
          Length = 191

 Score = 78.0 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 60/131 (45%), Gaps = 3/131 (2%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           + L++ S GG + AG++  + ++  +  + T   G   S  + LL  G +  R    NA 
Sbjct: 62  MYLHVCSEGGDLFAGISAMNIIEKSRVKVVTIAQGVCCSAATFLLLGGHE--RRIGKNAH 119

Query: 135 ILLHQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           +L+HQ S   F G+  +++   +   K+   + + Y +      ++ +K + RD  +   
Sbjct: 120 VLIHQISTNGFWGKYEELKDEMKSCDKLMDMVTKTYKEKTTIPQKQFKKIMKRDMYLDPQ 179

Query: 194 EACDWGVVDKV 204
           E   + VV  +
Sbjct: 180 ECIKYNVVHSI 190


>gi|312898086|ref|ZP_07757484.1| Clp protease [Megasphaera micronuciformis F0359]
 gi|310620819|gb|EFQ04381.1| Clp protease [Megasphaera micronuciformis F0359]
          Length = 159

 Score = 78.0 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 2/91 (2%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K++++YINS GG V AGMAI + ++           G AAS+ S++  A +    +   N
Sbjct: 65  KDLTIYINSDGGSVPAGMAIANMIKRHDGHTVGVVDGWAASIASVIFMACDDL--YMPKN 122

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKR 163
             +++H+PS    G + D+ R A+ +++ K+
Sbjct: 123 TFLMIHKPSAMAMGDSDDMLRVARCLIRCKK 153


>gi|255655334|ref|ZP_05400743.1| translocation-enhancing protein TepA [Clostridium difficile
           QCD-23m63]
          Length = 244

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 74/156 (47%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I   L  +E  N  K + + +N+ GG + AG+AI + +      + T  +G + S+G 
Sbjct: 69  EHIIPMLYSIEESNDVKGVLVVLNTVGGDIEAGLAIAELLNSTSKKVVTLVLGGSHSIGV 128

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L +AG+    F  P A +++H      +G    I    +   K++ R+ +  ++     
Sbjct: 129 PLATAGD--YSFIAPTATMIIHPVRT--TGLVIGINETFEYFKKMQDRIIQFIIRTSNIK 184

Query: 177 YEEVEKTL-DRDHIMS-------ASEACDWGVVDKV 204
            + +EK + ++D ++S         EA D+G++D+V
Sbjct: 185 KDVLEKLMHEKDELVSDVGSVLIGKEAVDYGLIDEV 220


>gi|296451320|ref|ZP_06893060.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile NAP08]
 gi|296880328|ref|ZP_06904291.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile NAP07]
 gi|296259926|gb|EFH06781.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile NAP08]
 gi|296428569|gb|EFH14453.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
           difficile NAP07]
          Length = 252

 Score = 77.6 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 74/156 (47%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I   L  +E  N  K + + +N+ GG + AG+AI + +      + T  +G + S+G 
Sbjct: 77  EHIIPMLYSIEESNDVKGVLVVLNTVGGDIEAGLAIAELLNSTSKKVVTLVLGGSHSIGV 136

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L +AG+    F  P A +++H      +G    I    +   K++ R+ +  ++     
Sbjct: 137 PLATAGD--YSFIAPTATMIIHPVRT--TGLVIGINETFEYFKKMQDRIIQFIIRTSNIK 192

Query: 177 YEEVEKTL-DRDHIMS-------ASEACDWGVVDKV 204
            + +EK + ++D ++S         EA D+G++D+V
Sbjct: 193 KDVLEKLMHEKDELVSDVGSVLIGKEAVDYGLIDEV 228


>gi|126698922|ref|YP_001087819.1| translocation-enhancing protein TepA [Clostridium difficile 630]
 gi|254974868|ref|ZP_05271340.1| translocation-enhancing protein TepA [Clostridium difficile
           QCD-66c26]
 gi|255092255|ref|ZP_05321733.1| translocation-enhancing protein TepA [Clostridium difficile CIP
           107932]
 gi|255100344|ref|ZP_05329321.1| translocation-enhancing protein TepA [Clostridium difficile
           QCD-63q42]
 gi|255306281|ref|ZP_05350452.1| translocation-enhancing protein TepA [Clostridium difficile ATCC
           43255]
 gi|255313995|ref|ZP_05355578.1| translocation-enhancing protein TepA [Clostridium difficile
           QCD-76w55]
 gi|255516675|ref|ZP_05384351.1| translocation-enhancing protein TepA [Clostridium difficile
           QCD-97b34]
 gi|255649774|ref|ZP_05396676.1| translocation-enhancing protein TepA [Clostridium difficile
           QCD-37x79]
 gi|260682931|ref|YP_003214216.1| translocation-enhancing protein TepA [Clostridium difficile CD196]
 gi|260686529|ref|YP_003217662.1| translocation-enhancing protein TepA [Clostridium difficile R20291]
 gi|306519879|ref|ZP_07406226.1| translocation-enhancing protein TepA [Clostridium difficile
           QCD-32g58]
 gi|115250359|emb|CAJ68181.1| Protein export-enhancing factor [Clostridium difficile]
 gi|260209094|emb|CBA62253.1| translocation-enhancing protein TepA [Clostridium difficile CD196]
 gi|260212545|emb|CBE03509.1| translocation-enhancing protein TepA [Clostridium difficile R20291]
          Length = 244

 Score = 77.6 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 74/156 (47%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I   L  +E  N  K + + +N+ GG + AG+AI + +      + T  +G + S+G 
Sbjct: 69  EHIIPMLYSIEESNDVKGVLVVLNTVGGDIEAGLAIAELLNSTSKKVVTLVLGGSHSIGV 128

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L +AG+    F  P A +++H      +G    I    +   K++ R+ +  ++     
Sbjct: 129 PLATAGD--YSFIAPTATMIIHPVRT--TGLVIGINETFEYFKKMQDRIIQFIIRTSNIK 184

Query: 177 YEEVEKTL-DRDHIMS-------ASEACDWGVVDKV 204
            + +EK + ++D ++S         EA D+G++D+V
Sbjct: 185 KDVLEKLMHEKDELVSDVGSVLIGKEAVDYGLIDEV 220


>gi|163311880|gb|ABY26953.1| Clp protease 2 proteolytic subunit [Capsicum annuum]
          Length = 99

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 51/77 (66%), Gaps = 6/77 (7%)

Query: 17 GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
          G  PMV E      R   + S+L + RI+   G ++D MA +I AQLL+L+A +P K+I 
Sbjct: 29 GPPPMVQE------RFQSVISQLFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPTKDIV 82

Query: 77 LYINSPGGVVTAGMAIY 93
          +Y+NSPGG VTAGMA++
Sbjct: 83 MYVNSPGGSVTAGMAVF 99


>gi|226949137|ref|YP_002804228.1| serine protease [Clostridium botulinum A2 str. Kyoto]
 gi|226844288|gb|ACO86954.1| serine protease [Clostridium botulinum A2 str. Kyoto]
          Length = 247

 Score = 77.2 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 83/198 (41%), Gaps = 15/198 (7%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
              E  N+ + + DIY  +  E  +    +  D            LE     + I++YIN
Sbjct: 3   KFYEFKNKTDNNIDIY--VYGE--IIGGSEKWDESDVTFNDFKDNLEGLTGNETINMYIN 58

Query: 81  SPGGVVTAGMAIYDTMQFIKPP---ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           S GG VT    I   +Q  K     I+    G  AS  S L    +    +A  ++ +++
Sbjct: 59  SIGGSVTTTQGIIAMLQRAKGKGVTINATIDGIGASCASFLPLVAD--NVYAYKSSLLMV 116

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRR-LNEIYVKNCGKTY--EEVEKTLDRDHIMSASE 194
           H P     G   ++++    + KI+   +  +Y+    ++   ++++  +D++  ++A E
Sbjct: 117 HHPYTLCIGNVDELQKQIDLLNKIENSVMMPLYLNKAKESITKDKIKNLVDKETWLNAKE 176

Query: 195 ACD-WGVVDKVLMSRIDI 211
             + + +  ++L    D+
Sbjct: 177 MSEIFNI--EILEDDKDL 192


>gi|160890235|ref|ZP_02071238.1| hypothetical protein BACUNI_02675 [Bacteroides uniformis ATCC 8492]
 gi|156859967|gb|EDO53398.1| hypothetical protein BACUNI_02675 [Bacteroides uniformis ATCC 8492]
          Length = 372

 Score = 77.2 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 78/177 (44%), Gaps = 16/177 (9%)

Query: 40  LKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           + E ++ + G I+ +        L +   +   + + L ++S GG V   +A+   +   
Sbjct: 1   MNETVITLFGTIDRYWYNK--NYLKYFLDKAKGQPVRLKVSSYGGDVAEAVAM-SALMAE 57

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS--GGFSGQ--ASDIERHA 155
              ++   +   AS  ++L + G K +     +   L H+ S      GQ  A  +E   
Sbjct: 58  HGNVTVEFISFNASAATVL-AFGAKSIE-MHEDGMWLAHKCSLGVDIWGQLNADQLEDTI 115

Query: 156 QDIVKIKRR-------LNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           +++   K+        + + Y+   GK+ +++   ++ +  M A+EA +WG +DK++
Sbjct: 116 KELQNKKKSAEAIDLMIAQKYINRSGKSLKDIITLMEEERWMPAAEAKEWGFIDKII 172


>gi|166031789|ref|ZP_02234618.1| hypothetical protein DORFOR_01490 [Dorea formicigenerans ATCC
           27755]
 gi|166028242|gb|EDR46999.1| hypothetical protein DORFOR_01490 [Dorea formicigenerans ATCC
           27755]
          Length = 228

 Score = 77.2 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 84/199 (42%), Gaps = 22/199 (11%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMA----------TLICAQLLFLEAENPQK 73
           E    G    D  +R    R++ + G+IE H A            +   L  +E      
Sbjct: 17  EMKETGSMKLDSNNRKHNVRLLTIIGEIEGHEAVSGNTKATKYEHLLPMLAEVEDSEEID 76

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
            + + +N+ GG V AG++I + +  I  P  +  +G + S+G  L  A +    F +P+ 
Sbjct: 77  GLLILLNTMGGDVEAGLSIAEMIASISKPTVSLVLGGSHSIGGPLAVAAD--YSFIVPSG 134

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------D 185
            +++H       G    +++  Q++++ ++R+      +     E +E+ +        D
Sbjct: 135 TMIIHPVRSN--GMFIGVQQSLQNMIRTQKRITGFLAAHSHMNEERIEELMLNPTELVKD 192

Query: 186 RDHIMSASEACDWGVVDKV 204
              ++   +A   G++D+V
Sbjct: 193 VGTLLEGEDAVREGLIDEV 211


>gi|168182333|ref|ZP_02616997.1| serine protease [Clostridium botulinum Bf]
 gi|182674431|gb|EDT86392.1| serine protease [Clostridium botulinum Bf]
          Length = 247

 Score = 77.2 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 77/180 (42%), Gaps = 12/180 (6%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
              E  N+ +++ DIY  +  E  +    +  D            LE    ++ I++YIN
Sbjct: 3   KFYEFKNKTDKNIDIY--VYGE--IIGGSEKWDESDVTFNDFRDNLERLTGKETINMYIN 58

Query: 81  SPGGVVTAGMAIYDTMQFIKPP---ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           S GG VT    I   ++  K     I+    G  AS  S L    +    +A  ++ +++
Sbjct: 59  SVGGSVTTTQGIIAMLKRAKEKGVTINATIDGIGASCASFLPLVAD--NVYAYNSSLLMV 116

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRR-LNEIYVKNC--GKTYEEVEKTLDRDHIMSASE 194
           H P     G   ++++    + KI+   +  +Y+     G T +E++  +D++  ++A E
Sbjct: 117 HHPYTLCIGNVDELQKQIDLLNKIENSVMMPLYLNKAKEGITKDEIKDLVDKETWLNAKE 176


>gi|296102050|ref|YP_003612196.1| hypothetical protein ECL_01689 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295056509|gb|ADF61247.1| hypothetical protein ECL_01689 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 172

 Score = 77.2 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 2/99 (2%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L A      I+L+INSPGG V  G+AIY+ ++     I+    G AASM S++   G   
Sbjct: 31  LRALGDITHINLHINSPGGDVFDGIAIYNALKHHGAAITVHIDGLAASMASVIAMVGNPV 90

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRR 164
                 N  +++H PS    G   + +     ++ +K++
Sbjct: 91  --IMPENTMMMIHYPSHYLMGTHEEPDSFINSLLTMKKK 127


>gi|161899459|ref|XP_001712963.1| Clp protease [Bigelowiella natans]
 gi|1401209|gb|AAD05370.1| ATP-dependent clp protease proteolytic subunit homolog
           [Bigelowiella natans]
 gi|75756458|gb|ABA27351.1| Clp protease [Bigelowiella natans]
          Length = 226

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/180 (25%), Positives = 83/180 (46%), Gaps = 10/180 (5%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           I  ++ K + +F+ G + D ++  I + LLF      ++ ISL +NS G  +T  + I +
Sbjct: 46  IAQKMSKTKSIFIYGYLNDSLSIQIISNLLFFNG-KNEQGISLILNSNGSNITDSININE 104

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            M +I P + T  +G       L+L+ G+K  R   PNA+I + +      G+ + I+  
Sbjct: 105 CMNYIYPEVYTVGIGNIMDSIILILANGKKDSRAIFPNAKISISKKLLRSYGKYNTIQEK 164

Query: 155 AQDIVK---IKRRLNEIYVKNCGKTY--EEVEKTL--DRDHIMSA--SEACDWGVVDKVL 205
              +V    +  R+          +   +  +  L  D++   S    EA  +G++DKVL
Sbjct: 165 CVFLVHASFLFSRILNHIALETHYSAVNDRKKNDLFIDKNRFFSISNKEALSYGIIDKVL 224


>gi|255524218|ref|ZP_05391177.1| peptidase S14 ClpP [Clostridium carboxidivorans P7]
 gi|296185339|ref|ZP_06853749.1| Clp protease [Clostridium carboxidivorans P7]
 gi|255512043|gb|EET88324.1| peptidase S14 ClpP [Clostridium carboxidivorans P7]
 gi|296050173|gb|EFG89597.1| Clp protease [Clostridium carboxidivorans P7]
          Length = 229

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 75/156 (48%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  QL+ +E +   + + + +N+ GG V AG+AI + ++ +  P  +  +G   S+G 
Sbjct: 61  EHVIPQLINIENDQNIEGLLIVLNTVGGDVEAGLAIAEMIRSLSKPTVSLVIGGGHSIGV 120

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L +A +    F  P+A +++H      +G    + +  +   K++ R+ E  V+     
Sbjct: 121 PLATAAD--YSFISPSATMIIHPIR--MNGLVIGVPQTFEYFNKMQERITEFIVRTSKIK 176

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
            E+V+K +        D   I+   +A + G++D+V
Sbjct: 177 REQVQKLMVQTDELLNDMGTILIGEQAVEAGLIDQV 212


>gi|167040270|ref|YP_001663255.1| peptidase S14, ClpP [Thermoanaerobacter sp. X514]
 gi|256750804|ref|ZP_05491689.1| peptidase S14 ClpP [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914354|ref|ZP_07131670.1| peptidase S14 ClpP [Thermoanaerobacter sp. X561]
 gi|307724410|ref|YP_003904161.1| peptidase S14 ClpP [Thermoanaerobacter sp. X513]
 gi|166854510|gb|ABY92919.1| peptidase S14, ClpP [Thermoanaerobacter sp. X514]
 gi|256750387|gb|EEU63406.1| peptidase S14 ClpP [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889289|gb|EFK84435.1| peptidase S14 ClpP [Thermoanaerobacter sp. X561]
 gi|307581471|gb|ADN54870.1| peptidase S14 ClpP [Thermoanaerobacter sp. X513]
          Length = 238

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 69/156 (44%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  QL+ +E     K + + +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 63  EHIIPQLVAIEENPNIKGVLILLNTVGGDVEAGLAIAEMIASLSKPTVSIVLGGGHSIGV 122

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L  +      + +P+A + +H      +G    + +      K++ R+ E  V+N    
Sbjct: 123 PLAVSA--NYSYIVPSATMTIHPIR--MTGLIVGVPQTFDYFNKMQDRIVEFIVRNSKIK 178

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
            +   K +        D   I+   EA D+G++D++
Sbjct: 179 RDTFMKLMLKTGELANDIGTILVGKEAVDYGLIDEI 214


>gi|254479114|ref|ZP_05092466.1| Clp protease [Carboxydibrachium pacificum DSM 12653]
 gi|214034963|gb|EEB75685.1| Clp protease [Carboxydibrachium pacificum DSM 12653]
          Length = 238

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 68/156 (43%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  QL+ +E     K + + +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 64  EHIIPQLVAIEENPSIKGVLVLLNTVGGDVEAGLAIAEMIASLSKPTVSIVLGGGHSIGV 123

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L  +      + +P+A + +H      +G    + +      K++ R+ E  V+N    
Sbjct: 124 PLAVSA--NYSYIVPSATMTIHPIR--MTGLVVGVPQTFDYFNKMQDRIVEFIVRNSKIK 179

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
            E     +        D   I+   EA D+G++D++
Sbjct: 180 RETFMSLMLKTGELANDIGTILVGKEAVDYGLIDEI 215


>gi|229605031|ref|YP_002875730.1| putative scaffolding protein/Clp protease [Lactococcus phage P087]
 gi|227826014|gb|ACP41738.1| putative scaffolding protein/Clp protease [Lactococcus phage P087]
          Length = 346

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 68/163 (41%), Gaps = 8/163 (4%)

Query: 49  GQIEDHMATLICAQLLFLEA----ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
           G+    M   +       EA        +++ + + + GG V    A+   +  ++    
Sbjct: 15  GKWLREMGEDVILPDDVKEAVTKANELGEDLEIDLTTNGGSVMDAGAMVSELNKLEGKSK 74

Query: 105 TFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG--QASDIERHAQDIVKIK 162
               G  AS G++L S  ++        +  L+H P   + G  +  ++E   Q +  I 
Sbjct: 75  VHIQGMVASAGTVLASVFDEV--SMSDFSYFLIHYPRQQYYGILRPQELEELTQQLGAIT 132

Query: 163 RRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           ++  +IY    G   + +E  + ++ + SAS+A D G VD ++
Sbjct: 133 QQSIDIYEAKTGLDRDVIEDYMAKESMFSASQAKDLGFVDSIV 175


>gi|167037609|ref|YP_001665187.1| peptidase S14, ClpP [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|307264928|ref|ZP_07546490.1| peptidase S14 ClpP [Thermoanaerobacter wiegelii Rt8.B1]
 gi|320116024|ref|YP_004186183.1| peptidase S14 ClpP [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|326389423|ref|ZP_08210990.1| peptidase S14 ClpP [Thermoanaerobacter ethanolicus JW 200]
 gi|166856443|gb|ABY94851.1| peptidase S14, ClpP [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|306920186|gb|EFN50398.1| peptidase S14 ClpP [Thermoanaerobacter wiegelii Rt8.B1]
 gi|319929115|gb|ADV79800.1| peptidase S14 ClpP [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|325994428|gb|EGD52853.1| peptidase S14 ClpP [Thermoanaerobacter ethanolicus JW 200]
          Length = 238

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 69/156 (44%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  QL+ +E     K + + +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 63  EHIIPQLVAIEENPNIKGVLILLNTVGGDVEAGLAIAEMIASLSKPTVSIVLGGGHSIGV 122

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L  +      + +P+A + +H      +G    + +      K++ R+ E  V+N    
Sbjct: 123 PLAVSA--NYSYIVPSATMTIHPIR--MTGLIVGVPQTFDYFNKMQDRIVEFIVRNSKIK 178

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
            +   K +        D   I+   EA D+G++D++
Sbjct: 179 RDTFMKLMLKTGELANDIGTILVGKEAVDYGLIDEI 214


>gi|215433747|gb|ACJ66732.1| putative ATP-dependent Clp protease proteolytic subunit
           [Arabidopsis thaliana]
          Length = 99

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 2/72 (2%)

Query: 136 LLHQPSGGFSG--QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           ++ QP    SG   ASD+   A++++  +  L E+  K+ G + E V   + R + M A 
Sbjct: 1   MIQQPRVPSSGLMPASDVLIRAKEVITNRDILVELLSKHTGNSVETVANVMRRPYYMDAP 60

Query: 194 EACDWGVVDKVL 205
           +A ++GV+D++L
Sbjct: 61  KAKEFGVIDRIL 72


>gi|164688506|ref|ZP_02212534.1| hypothetical protein CLOBAR_02151 [Clostridium bartlettii DSM
           16795]
 gi|164602919|gb|EDQ96384.1| hypothetical protein CLOBAR_02151 [Clostridium bartlettii DSM
           16795]
          Length = 321

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 72/156 (46%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +   L  +E +   K I + +N+ GG V AG+A+ + +  I   + T  +G + S+G 
Sbjct: 147 EHVIPMLYSIEEDPEIKGILIILNTVGGDVEAGLAMAELINSISKKVVTLVLGGSHSIGV 206

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L +AG+    F  P+A +++H       G    +    +   K++ R+NE   +    +
Sbjct: 207 PLATAGD--YSFIAPSATMIVHPIRTN--GLVIGVNETFEYFKKMQERINEFITRTSNIS 262

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
            EE+ + +        D   ++   EA D G++++V
Sbjct: 263 EEELTRLMHAKDELVSDVGSVLIGKEAVDCGLINEV 298


>gi|146319205|ref|YP_001198917.1| putative ATP-dependent Clp protease, proteolytic subunit
          [Streptococcus suis 05ZYH33]
 gi|145690011|gb|ABP90517.1| putative ATP-dependent Clp protease, proteolytic subunit
          [Streptococcus suis 05ZYH33]
          Length = 57

 Score = 76.4 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/54 (66%), Positives = 47/54 (87%)

Query: 18 LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
          ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  I AQLLFL+A  P
Sbjct: 1  MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAPRP 54


>gi|89894720|ref|YP_518207.1| hypothetical protein DSY1974 [Desulfitobacterium hafniense Y51]
 gi|89334168|dbj|BAE83763.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 209

 Score = 76.4 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 71/156 (45%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  QL  +E     + I L +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 38  EHVIPQLFAVEQNPKVEGILLILNTAGGDVEAGLAISELVSSLSKPSVSIVLGGGHSIGI 97

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +  + ++   F  P   + LH     ++G   +  +    + K++ R+N   +++   T
Sbjct: 98  PIAVSCDR--SFIAPTGTMTLHPIR--YTGLVINGHQQFDYLQKMQERINSFIIQHSRIT 153

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
            E+++K +        D   I+   +A D G++D V
Sbjct: 154 EEQLKKLMFATGELAQDIGTILIGQDAVDIGLIDAV 189


>gi|20807828|ref|NP_622999.1| protease subunit of ATP-dependent Clp protease [Thermoanaerobacter
           tengcongensis MB4]
 gi|20516388|gb|AAM24603.1| Protease subunit of ATP-dependent Clp proteases [Thermoanaerobacter
           tengcongensis MB4]
          Length = 239

 Score = 76.4 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 68/156 (43%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  QL+ +E     K + + +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 65  EHIIPQLVAIEENPSIKGVLVLLNTVGGDVEAGLAIAEMIASLSKPTVSIVLGGGHSIGV 124

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L  +      + +P+A + +H      +G    + +      K++ R+ E  V+N    
Sbjct: 125 PLAVSA--NYSYIVPSATMTIHPIR--MTGLVVGVPQTFDYFNKMQDRIVEFIVRNSKIK 180

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
            E     +        D   I+   EA D+G++D++
Sbjct: 181 RETFMSLMLKTGELANDIGTILVGKEAVDYGLIDEI 216


>gi|303239710|ref|ZP_07326234.1| peptidase S14 ClpP [Acetivibrio cellulolyticus CD2]
 gi|302592647|gb|EFL62371.1| peptidase S14 ClpP [Acetivibrio cellulolyticus CD2]
          Length = 93

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 53/91 (58%), Gaps = 2/91 (2%)

Query: 114 MGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC 173
           M + LLS+G KG R AL N++I++   SG  +   SD ++ + + V  K  +NEI++KN 
Sbjct: 1   MAAFLLSSGTKGKRIALENSKIVMAPLSGKNTSDLSDAQKKSIETVINK--MNEIWLKNT 58

Query: 174 GKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           G+    +    +   + +  EA D+G++D++
Sbjct: 59  GQDIARIINDSENLRVFNQHEARDYGIIDRI 89


>gi|169830994|ref|YP_001716976.1| peptidase S14, ClpP [Candidatus Desulforudis audaxviator MP104C]
 gi|169637838|gb|ACA59344.1| peptidase S14, ClpP [Candidatus Desulforudis audaxviator MP104C]
          Length = 266

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  QL+ LE     + I + +N+ GG V AG+AI + +  I  P  +  +G   S+G 
Sbjct: 83  EHILPQLVALEQHPDIEGILVILNTVGGDVEAGLAIAEMLSSISKPTVSLVLGGGHSIGV 142

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +         +    A + +H      +GQ   + +  + + K++ R+    VK+   T
Sbjct: 143 PIAVC--TSYSYIAETASMTIHPIR--ITGQILTVPQTFEYLEKMQDRVVRFVVKHSRIT 198

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            E   + +       RD   ++   EA D G++D+V
Sbjct: 199 EERFRELMFRTGELARDIGTVLIGKEAVDCGLIDEV 234


>gi|300854510|ref|YP_003779494.1| putative protease [Clostridium ljungdahlii DSM 13528]
 gi|300434625|gb|ADK14392.1| predicted protease [Clostridium ljungdahlii DSM 13528]
          Length = 221

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 80/168 (47%), Gaps = 12/168 (7%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
           V ++ + +      +   L+ +E +   + + + +N+ GG V AG+AI + ++ +  P  
Sbjct: 42  VNLSSETKTTKYEHVIPNLIAIENDKRVEGLLVVLNTVGGDVEAGLAIAEMIRSLSKPTV 101

Query: 105 TFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRR 164
           +  +G   S+G  L +A +    F  P+A +++H      SG    + +  +   K++ R
Sbjct: 102 SLVIGGGHSIGVPLATASD--YSFISPSATMIIHPIR--MSGMVIGVPQTFEYFNKMQER 157

Query: 165 LNEIYVKNCGKTYEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
           +NE  V+    T E++ + +        D   I+   +A + G++D+V
Sbjct: 158 INEFIVRTSKITGEKLTELMLQTDELLNDMGTILIGKQAVEQGLIDEV 205


>gi|169841259|ref|ZP_02874372.1| ATP-dependent Clp protease, proteolytic subunit [candidate division
           TM7 single-cell isolate TM7a]
          Length = 62

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 34/51 (66%)

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           +++I ++K   ++I  +  GK+ EE+    +RD+ MS  EA ++G++DK+L
Sbjct: 12  SKEIERMKEITSKILSEATGKSVEEIYADTERDNFMSPEEAVNYGLIDKIL 62


>gi|182417555|ref|ZP_02948881.1| Clp protease [Clostridium butyricum 5521]
 gi|237668635|ref|ZP_04528619.1| Clp protease family protein [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182378568|gb|EDT76096.1| Clp protease [Clostridium butyricum 5521]
 gi|237656983|gb|EEP54539.1| Clp protease family protein [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 241

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 74/156 (47%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  QL+ +E  +  K + + +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 74  EHIIPQLIEIEQNDSVKGVLIVLNTVGGDVEAGLAIAEMINSMSKPTVSIVIGGGHSIGV 133

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L ++ +    F  P+A +++H      +G    I +  +   K++ R+N+  V+     
Sbjct: 134 PLATSSD--FSFITPSATMIVHPVR--MNGFVIGIAQTFEYFKKMQERINDFIVRTSNIK 189

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
            E +EK +        D   ++   +A D G++D+V
Sbjct: 190 SETLEKFMLQTDDLLNDVGTMLIGKQAVDCGLIDEV 225


>gi|161899095|ref|XP_001712774.1| Clp protease [Bigelowiella natans]
 gi|75756267|gb|ABA27162.1| Clp protease [Bigelowiella natans]
          Length = 237

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 75/193 (38%), Gaps = 22/193 (11%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG--GVVTAG 89
           + D+ S L +  I+F+   + +    L+  QLL+   +  +K I+  INS G     T  
Sbjct: 53  APDVPSFLFENSIIFIGMPLTEITIELLFCQLLWQNNKKSKKYINFIINSYGSHSSYTDI 112

Query: 90  MAIY-------DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSG 142
             I+       D ++F     ++  +G++      L        R AL N+      P  
Sbjct: 113 NNIFGSYLTLIDLIEFNSYQTNSIVIGKSFGTALFLFLTSSTNKRIALENSSFSFETPFL 172

Query: 143 GFSGQ-----ASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
             S +     ++ I      I  +K + N  Y  +   +       L      ++ EA +
Sbjct: 173 YSSTRSLSNLSNSIIEFNTFINYMKEKFN--YSLHYNNSL------LQSKRYFNSKEALE 224

Query: 198 WGVVDKVLMSRID 210
            G++D++  S+ +
Sbjct: 225 IGIIDEIFTSKNN 237


>gi|219669156|ref|YP_002459591.1| peptidase S14 ClpP [Desulfitobacterium hafniense DCB-2]
 gi|219539416|gb|ACL21155.1| peptidase S14 ClpP [Desulfitobacterium hafniense DCB-2]
          Length = 230

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 71/156 (45%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  QL  +E     + I L +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 59  EHVIPQLFAVEQNPKVEGILLILNTAGGDVEAGLAISELVSSLSKPSVSIVLGGGHSIGI 118

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +  + ++   F  P   + LH     ++G   +  +    + K++ R+N   +++   T
Sbjct: 119 PIAVSCDR--SFIAPTGTMTLHPIR--YTGLVINGHQQFDYLQKMQERINSFIIQHSQIT 174

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
            E+++K +        D   I+   +A D G++D V
Sbjct: 175 EEQLKKLMFATGELAQDIGTILIGQDAVDIGLIDAV 210


>gi|255571636|ref|XP_002526763.1| conserved hypothetical protein [Ricinus communis]
 gi|223533890|gb|EEF35617.1| conserved hypothetical protein [Ricinus communis]
          Length = 78

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 134 RILLHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           R+++HQP +G +  +  +    A++++K+   L  IY +   K    V + ++RD  MSA
Sbjct: 4   RVMIHQPIAGFYEDKIGEFVLEAKELLKLCEILTRIYAQRTRKHLWVVSEDMERDVFMSA 63

Query: 193 SEACDWGVVDKV 204
            EA   G+VD V
Sbjct: 64  VEAQAHGIVDLV 75


>gi|114566793|ref|YP_753947.1| peptidase S14, ClpP [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114337728|gb|ABI68576.1| ATP-dependent Clp protease proteolytic subunit ClpP [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
          Length = 267

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 83/191 (43%), Gaps = 22/191 (11%)

Query: 32  SYDIYSRLLKERIVFVTGQIEDHMA----------TLICAQLLFLEAENPQKEISLYINS 81
             ++ S       + ++GQ+E HM             I  QL+ +E     K + + +N+
Sbjct: 59  QLEVPSFKSDIHCLTISGQVEGHMVLPPQNKTTKYEHIIPQLVAVEENPQIKGLLVALNT 118

Query: 82  PGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
            GG V AG+A+ + +  +  P  +  +G   S+GS +         F  P+A + +H   
Sbjct: 119 VGGDVEAGLALAEMIASLSKPTVSIVLGGGHSIGSTIAVC--TNYSFIAPSATMTIHPIR 176

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK------TLDRD--HIMSAS 193
              +G    + +  + + K++ R+    V++   + E+  +       L RD   ++   
Sbjct: 177 L--TGLVIGVPQTYEYLDKMQDRVVRFVVEHSNISEEKFRELMFRMGDLARDIGTVLVGK 234

Query: 194 EACDWGVVDKV 204
           +A D G++D+V
Sbjct: 235 DAVDCGLIDQV 245


>gi|300933496|ref|ZP_07148752.1| Endopeptidase Clp [Corynebacterium resistens DSM 45100]
          Length = 74

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/73 (47%), Positives = 50/73 (68%)

Query: 89  GMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQA 148
            +AIYDTM+FIKP I+T C+ QA S+G++LL+AG  G R ALP+ARI+LHQP+    G  
Sbjct: 1   MLAIYDTMKFIKPSIATTCVAQAVSVGAVLLTAGAPGKRAALPHARIVLHQPAAQSRGTI 60

Query: 149 SDIERHAQDIVKI 161
             + R    + ++
Sbjct: 61  PHLIRDVNVLPRL 73


>gi|226313002|ref|YP_002772896.1| translocation-enhancing protein [Brevibacillus brevis NBRC 100599]
 gi|226095950|dbj|BAH44392.1| translocation-enhancing protein [Brevibacillus brevis NBRC 100599]
          Length = 274

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 68/160 (42%), Gaps = 20/160 (12%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  QL+  E  N  + + + +N+ GG V AG+AI + +  +  P+ T  +G   S+G 
Sbjct: 98  EHLIPQLVAAEQNNKIEGVLVILNTVGGDVEAGLAIAEMVASLSKPVVTLVLGGGHSIGV 157

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +  AG     F    A + +H      +G    + +  + + K++ R+     ++   +
Sbjct: 158 PIAVAGS--YSFIAETATMTIHPIRL--TGLVIGVPQTFEYLDKMQDRVVSFIARHSKVS 213

Query: 177 YEEVEKTLDRDHIMSAS------------EACDWGVVDKV 204
            E+  + + R    +              +A  +G++D+V
Sbjct: 214 EEKFRELMTR----TGELTRDIGTNVIGVDAVKYGLIDEV 249


>gi|260893129|ref|YP_003239226.1| peptidase S14 ClpP [Ammonifex degensii KC4]
 gi|260865270|gb|ACX52376.1| peptidase S14 ClpP [Ammonifex degensii KC4]
          Length = 234

 Score = 75.3 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 71/165 (43%), Gaps = 12/165 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  QL+ LE     + I + +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 57  EHVLPQLVALEQHPEIEGILVILNTVGGDVEAGLAIAEMLASLSKPTVSLVLGGGHSIGV 116

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +  A      F    A + +H      +GQ   + +  + + K++ R+ +  V++    
Sbjct: 117 PIAVAAR--YSFITETASMTIHPIRL--TGQVIGVPQTWEYLEKMQDRVIKFVVRHSRIE 172

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKVLMSRIDIEE 213
                + +       RD   ++   EA D G++D+V   R  + +
Sbjct: 173 EWRFRELMFRSGELARDIGTVLVGREAVDCGLIDEVGGVRKALAK 217


>gi|295100235|emb|CBK97780.1| Protease subunit of ATP-dependent Clp proteases [Faecalibacterium
           prausnitzii L2-6]
          Length = 410

 Score = 75.3 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 63/149 (42%), Gaps = 7/149 (4%)

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP---ISTFCMGQAASMGSLLL 119
           L  L+      +I + ++S GG     + I++ ++ +      ++    G A S GSL++
Sbjct: 60  LSDLQQVENCPQIIIRMDSLGGDAGVSILIHNRLRELAAKGTKLTCIVDGVAMSGGSLIM 119

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSG--QASDIERHAQDIVKIKRRLNEIYVKNCGKTY 177
            A +       P++ +++H+      G   A ++ + A+      +    IY +  G + 
Sbjct: 120 CACDTVK--VNPSSLVMIHKCWTPIRGALNADELRKAAEANDAWDKSQVAIYKRKTGLSE 177

Query: 178 EEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             +   +     M+  EA + G  +++L 
Sbjct: 178 TVLLHMMSDTTYMTGKEAIEKGFANELLD 206


>gi|295110105|emb|CBL24058.1| Protease subunit of ATP-dependent Clp proteases [Ruminococcus obeum
           A2-162]
          Length = 240

 Score = 74.9 bits (183), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 88/197 (44%), Gaps = 22/197 (11%)

Query: 26  TNRGERSYDIYSRLLKERIVFVTGQIEDHMA----------TLICAQLLFLEAENPQKEI 75
              G+ + D   R  +  ++ + G++E H +            +  +L  +E +     +
Sbjct: 23  RETGQLTLDQNKRKHRIELLTIIGEVEGHDSAPSQSKTTKYEHVLPKLALIEDDKDVDGL 82

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            + +N+ GG V AG+AI + +  +  P  +  +G   S+G  +  + +    FA+P+A +
Sbjct: 83  LILLNTVGGDVEAGLAIAEMIASLSIPTVSLVLGGGHSIGVPMAVSAD--YSFAVPSATM 140

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRD 187
           ++H      SG    + +  ++I KI+ R+      + G T E +E+ +        D  
Sbjct: 141 VIHPVRS--SGMFIGVAQSYRNIEKIQDRITGFIAAHSGTTQERLEELMLDTSQLVKDVG 198

Query: 188 HIMSASEACDWGVVDKV 204
            ++   EA   G+++++
Sbjct: 199 TMLEGREAVKEGLINEI 215


>gi|153812753|ref|ZP_01965421.1| hypothetical protein RUMOBE_03160 [Ruminococcus obeum ATCC 29174]
 gi|149831113|gb|EDM86202.1| hypothetical protein RUMOBE_03160 [Ruminococcus obeum ATCC 29174]
          Length = 243

 Score = 74.9 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 88/197 (44%), Gaps = 22/197 (11%)

Query: 26  TNRGERSYDIYSRLLKERIVFVTGQIEDHMA----------TLICAQLLFLEAENPQKEI 75
              GE + D   +  +  ++ + G++E H A            +  +L  +E +   + +
Sbjct: 30  REMGELTLDQNVKRHRIELLTIIGEVEGHDAAPSQSKTTKYEHVLPKLAMIEDDENVEGL 89

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            + +N+ GG V AG+AI + +  +  P  +  +G   S+G  +  + +    FA+P+A +
Sbjct: 90  LILLNTVGGDVEAGLAIAEMIASLSIPTVSLVLGGGHSIGVPMAVSAD--YSFAVPSATM 147

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRD 187
           ++H      SG    + +  +++ KI+ R+      +   + E +E+ +        D  
Sbjct: 148 VIHPVRS--SGMFIGVAQTYRNMEKIQDRITGFIAAHSRASQERLEELMLDTSQLVKDVG 205

Query: 188 HIMSASEACDWGVVDKV 204
            ++   EA   G++D++
Sbjct: 206 TLLEGEEAVKEGLIDEI 222


>gi|153873549|ref|ZP_02002095.1| secreted protein [Beggiatoa sp. PS]
 gi|152069984|gb|EDN67904.1| secreted protein [Beggiatoa sp. PS]
          Length = 476

 Score = 74.5 bits (182), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 63/144 (43%), Gaps = 3/144 (2%)

Query: 42  ERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN-SPGGVVTAGMAIYDTMQFIK 100
           +R + + G I    A  I  ++ +   ++ +  I L I+  PGG V  G  I   M+  +
Sbjct: 250 DRKIVLDGIIWPGTANNIVERIQYYNNKSTEYPIFLVIDYCPGGSVMEGTRIVKAMKKSR 309

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
            P+       AASM +++ +  +    +ALP+A I+ HQ  G   G  ++     + I +
Sbjct: 310 APVYVVVKALAASMAAVITTLADH--SYALPDAIIVHHQVWGMSFGNRTEQREQLKIIDE 367

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTL 184
              R+     +    T  ++ K +
Sbjct: 368 WSERIMGPVAEKMDMTLNDLVKKM 391


>gi|325263865|ref|ZP_08130598.1| Clp protease [Clostridium sp. D5]
 gi|324030903|gb|EGB92185.1| Clp protease [Clostridium sp. D5]
          Length = 242

 Score = 74.5 bits (182), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 80/183 (43%), Gaps = 22/183 (12%)

Query: 40  LKERIVFVTGQIEDHMA----------TLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
              +++ + G+IE H A            +  +L   E  +  + I + +N+ GG V AG
Sbjct: 35  HNIQLMTIIGEIEGHEAVSGNTKATKYEHLIPRLAEAEDNDDIEGILILLNTLGGDVEAG 94

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
           +AI + +  +  P  +  +G + S+G  L  + +    F +P+  +++H      +G   
Sbjct: 95  LAIAEMIASLSKPTVSLVLGGSHSIGGPLAVSAD--YSFIVPSGTMIVHPVRS--TGMFI 150

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDHIMSASEACDWGVV 201
            + +  +++ K + R+      +   T E +EK +        D   ++   EA   G++
Sbjct: 151 GVIQSYRNMEKTQDRITRFIASHSNITQERLEKLMLDSSQLVKDVGTLLEGEEAVKEGLI 210

Query: 202 DKV 204
           D+V
Sbjct: 211 DEV 213


>gi|150016096|ref|YP_001308350.1| peptidase S14, ClpP [Clostridium beijerinckii NCIMB 8052]
 gi|149902561|gb|ABR33394.1| peptidase S14, ClpP [Clostridium beijerinckii NCIMB 8052]
          Length = 235

 Score = 74.5 bits (182), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 75/156 (48%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  QL+ +E  +  K + + +N+ GG V AG+AI + ++ +  P  +  +G   S+G 
Sbjct: 68  EHIIPQLIDIEQNDDAKGLLIVLNTVGGDVEAGLAISEMIRSMSKPTVSIVIGGGHSIGV 127

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L ++ +    F  P+A +++H      +G    + +  +   K++ R+NE  V+     
Sbjct: 128 PLATSAD--FSFITPSATMIVHPVR--MNGFVIGVSQTFEYFKKMQERINEFIVRTSNIK 183

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
            + +E+ +        D   ++   +A D G++D+V
Sbjct: 184 PDTLERFMLQTDDLLNDVGTMLIGKQAVDCGLIDQV 219


>gi|229142709|ref|ZP_04271182.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           BDRD-ST26]
 gi|228640752|gb|EEK97110.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           BDRD-ST26]
          Length = 136

 Score = 74.1 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 41/75 (54%), Gaps = 2/75 (2%)

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCG--KTYEEVEKTLDRDHIMS 191
            +++H      SG A+ + + A DI +I + + + Y+   G     + +++ LD +  +S
Sbjct: 1   MMMIHNAWTYASGNANQLRKAADDIERINQSMVQHYLTRAGDKLDEDTLKQLLDAETWLS 60

Query: 192 ASEACDWGVVDKVLM 206
           A EA ++G+ D+++ 
Sbjct: 61  AEEAMNYGLCDEIIS 75


>gi|218660752|ref|ZP_03516682.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli
           IE4771]
          Length = 45

 Score = 74.1 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 30/45 (66%)

Query: 167 EIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           +I  +  G+  +++ K  DRD+ +SA EA D+G+V +++ S+ DI
Sbjct: 1   KIMAEATGQPLDKIAKDTDRDYWLSAEEAKDYGLVSRIVTSQADI 45


>gi|29566898|ref|NP_818463.1| gp163 [Mycobacterium phage Omega]
 gi|29425623|gb|AAN12805.1| gp163 [Mycobacterium phage Omega]
          Length = 236

 Score = 73.7 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 71/145 (48%), Gaps = 11/145 (7%)

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP------PISTFCMGQAASMGSLLLSAG 122
           ++P+ + +L ++SPGG   +G    D +            I+    G AASMG ++L A 
Sbjct: 93  QDPESKWNLIVDSPGGYCNSGFHAIDQLIEYSAWGGGSHYITMTVRGMAASMGGIILQAA 152

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK--TYEEV 180
           ++  R    NA+IL+H  S G  G   ++  +   I  +  +  +++    GK    +++
Sbjct: 153 DE--RVMGRNAQILIHPISSGLYGGRGELHDYMGRIEMLTAQAEKLFKHRAGKKLPRKKL 210

Query: 181 E-KTLDRDHIMSASEACDWGVVDKV 204
           +   + ++  + A EA ++ +VD++
Sbjct: 211 KNALMYKNWWIGAEEALEYALVDRI 235


>gi|312959274|ref|ZP_07773792.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
           fluorescens WH6]
 gi|311286534|gb|EFQ65097.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
           fluorescens WH6]
          Length = 384

 Score = 73.4 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 74/169 (43%), Gaps = 11/169 (6%)

Query: 42  ERIV--FVTGQIEDH--MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97
           ER++  FV G+I      A      L  ++  +    +    NS GG +  G+A+++ + 
Sbjct: 35  ERVIEVFVYGEIGAWGITANQFVQDLRAMD--DGVSPVIAAFNSIGGDLFDGLAMHNALS 92

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
            +    +      AAS  S+ +    + +  A  NA +++H P    +G A D  + A  
Sbjct: 93  RLGERCTGRIDALAASAASVAVCGAHRVVIAA--NAMLMIHNPWTYAAGDAEDFRKVADV 150

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVE--KTLDRDHIMSASEACDWGVVDKV 204
           + +    +   Y        +EVE  + +D +  ++A+EA   G+ D+V
Sbjct: 151 LDQTMEAIIAAYKAKA-PDIDEVELRRLVDAETWLTANEAVALGLADEV 198


>gi|167771987|ref|ZP_02444040.1| hypothetical protein ANACOL_03360 [Anaerotruncus colihominis DSM
           17241]
 gi|167665785|gb|EDS09915.1| hypothetical protein ANACOL_03360 [Anaerotruncus colihominis DSM
           17241]
          Length = 409

 Score = 73.4 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/185 (24%), Positives = 80/185 (43%), Gaps = 11/185 (5%)

Query: 29  GERSYDI--YSRLLKERIV-FVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV 85
           GE   +I  Y  ++  R V + TG+ E  +       L  L     +  +++ INS GG 
Sbjct: 32  GEDEAEITMYGEIVDRRPVDWWTGEPEPGLFISPEGFLEDLAQVKGKSRVTIRINSIGGD 91

Query: 86  VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NARILLHQPSGGF 144
           +  GMAIY+ ++ +    +    G AAS  S++  AG+      +P    +++H+PS  F
Sbjct: 92  LYTGMAIYNQLKALPGQKTVVIDGIAASAASVIAMAGD---VIQIPVGGTVMIHEPSA-F 147

Query: 145 SGQASDIERHAQDIVKIK---RRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
              + D ++    +  +    R   E+Y    G   + V   + +   M   EA D G  
Sbjct: 148 LADSYDQQQLKGVLKMLDAASRSAAEVYAGKTGLEVDAVRSMMAKTTWMIGQEAVDKGFA 207

Query: 202 DKVLM 206
            ++L 
Sbjct: 208 TELLE 212


>gi|153954066|ref|YP_001394831.1| protease [Clostridium kluyveri DSM 555]
 gi|146346947|gb|EDK33483.1| Predicted protease [Clostridium kluyveri DSM 555]
          Length = 229

 Score = 73.4 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/182 (23%), Positives = 84/182 (46%), Gaps = 22/182 (12%)

Query: 41  KERIVFVTGQIEDHMA----------TLICAQLLFLEAENPQKEISLYINSPGGVVTAGM 90
           K +I+ + GQIE H+             +   L+ +E +   + + + +N+ GG V AG+
Sbjct: 35  KIQILPIIGQIEGHVTLPPETKATKYEHVIPNLILMENDPRVEGVLVVLNTVGGDVEAGL 94

Query: 91  AIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASD 150
           AI + ++ +  P  +  +G   S+G  L +A +    F  P A +++H      +G    
Sbjct: 95  AIAEMIRSLSKPTVSLVIGGGHSIGVPLATASD--YSFISPTATMIVHPIR--MNGLIIG 150

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDHIMSASEACDWGVVD 202
           + +  Q   K++ R+NE  V+    T E++   +        D   I+   +A + G++D
Sbjct: 151 VPQTFQYFNKMQERINEFIVRTSRITREKLSDLMLQSDDLLNDMGTILIGKQAVEQGLID 210

Query: 203 KV 204
           KV
Sbjct: 211 KV 212


>gi|83589919|ref|YP_429928.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moorella
           thermoacetica ATCC 39073]
 gi|83572833|gb|ABC19385.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moorella
           thermoacetica ATCC 39073]
          Length = 259

 Score = 73.4 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 71/156 (45%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  QL+ +E +   K + + +N+ GG V AG+AI + +  +  P+ +  +G   S+G 
Sbjct: 83  EHIIPQLVAVEQDPSIKGLLVVLNTVGGDVEAGLAIAEMLVSMSKPVVSLVLGGGHSIGV 142

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +  A      F    A + +H      +G    + +  + + K++ R+    V++   +
Sbjct: 143 PISVAA--NYSFIAETATMTIHPIRL--TGLVIGVPQTYEYLDKMQDRVIRFIVEHANIS 198

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            +E+ + +       RD   I+   +A   G++D+V
Sbjct: 199 EQELRRLMFQTGELARDIGTILVGQDAVRVGLIDEV 234


>gi|229142384|ref|ZP_04270901.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           BDRD-ST26]
 gi|228641076|gb|EEK97390.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           BDRD-ST26]
          Length = 136

 Score = 73.4 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE--VEKTLDRDHIMS 191
            +++H      SG A  + + A DI +I + + + Y+   G   +E  +++ LD +  +S
Sbjct: 1   MMMIHNAWTYASGNADQLRKAADDIERINKSMVQHYLTRAGDKLDEDTLKQLLDAETWLS 60

Query: 192 ASEACDWGVVDKVLM 206
           A EA  +G+ D+++ 
Sbjct: 61  AEEAMGYGLCDEIIS 75


>gi|147677625|ref|YP_001211840.1| protease subunit of ATP-dependent Clp proteases [Pelotomaculum
           thermopropionicum SI]
 gi|146273722|dbj|BAF59471.1| protease subunit of ATP-dependent Clp proteases [Pelotomaculum
           thermopropionicum SI]
          Length = 286

 Score = 73.0 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 67/156 (42%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  QL+ LE     + I + +N+ GG V AG+AI + +  I  P  +  +G   S+G 
Sbjct: 102 EHVIPQLVALEQAPEVEGILIVLNTVGGDVEAGLAIAEVIASISKPTVSVVLGGGHSIGV 161

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +    +    F    A + +H       G    + +  + + K++ R+    V++   +
Sbjct: 162 PIAVGAQ--YSFIAATASMTIHPIRLN--GLVIGVPQTYEYLDKMQDRVVRFVVEHSKIS 217

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            E+  + +       RD   ++   EA + G++D V
Sbjct: 218 EEKFRELMFRTGELARDIGTVLIGREAVEVGLIDAV 253


>gi|149392599|gb|ABR26102.1| ATP-dependent clp protease proteolytic subunit [Oryza sativa Indica
           Group]
          Length = 77

 Score = 73.0 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 30/43 (69%)

Query: 167 EIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           +IY K+ G+  +++E+ ++RD  M   EA DWG++D+V+ +R 
Sbjct: 1   KIYQKHTGQEIDKIEQCMERDLFMDPEEARDWGLIDEVIENRP 43


>gi|314055266|ref|YP_004063604.1| putative ATP-dependent protease proteolytic subunit [Ostreococcus
           tauri virus 2]
 gi|313575157|emb|CBI70170.1| putative ATP-dependent protease proteolytic subunit [Ostreococcus
           tauri virus 2]
          Length = 210

 Score = 73.0 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 68/169 (40%), Gaps = 11/169 (6%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQK---------EISLYINSPGGVVTAGMAIYDT 95
           +   G+I              LE    ++         EI ++I S GG + +G  + + 
Sbjct: 43  IHFYGEITPENTLEFVESFRKLEIHLLKQKADLIGYEPEIRIHIMSEGGDMFSGFTLKNV 102

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           ++  +  + T   G   S  + +   G +  R    NA +L+HQ S  F G+  D++   
Sbjct: 103 LEKSRVKVVTIAQGACCSAATFMFLGGSE--RRMGENAYLLIHQLSTDFWGKYQDLKNEM 160

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           +   K    L  +Y+       ++ +K + +D  +SAS+   + +   +
Sbjct: 161 KSCDKFMASLKNMYMTKTEIPEKKFKKLMKKDLFLSASKCLKYKIAHAI 209


>gi|167748876|ref|ZP_02421003.1| hypothetical protein ANACAC_03650 [Anaerostipes caccae DSM 14662]
 gi|317470284|ref|ZP_07929678.1| Clp protease [Anaerostipes sp. 3_2_56FAA]
 gi|167651846|gb|EDR95975.1| hypothetical protein ANACAC_03650 [Anaerostipes caccae DSM 14662]
 gi|316902257|gb|EFV24177.1| Clp protease [Anaerostipes sp. 3_2_56FAA]
          Length = 239

 Score = 73.0 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 70/156 (44%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +   L   E  +  K I + +N+ GG V  G+A+ + +  +  P  T  +G + S+G 
Sbjct: 68  EHMIPALAKAEYSDDIKGILILLNTVGGDVECGLALAEMIASLSKPTVTLVLGGSHSIGV 127

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L  + +    F + +A +++H      SG    + +  ++I KI+ R+      +    
Sbjct: 128 PLAVSSD--YSFIVKSATMMIHPVRS--SGTFIGVLQSYRNIEKIQDRITRFISDHSDIA 183

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
            ++VE+ +        D   ++   +A + G+++++
Sbjct: 184 EDKVEELMLHIGEQVKDAGTVLEGEQAVELGLINEI 219


>gi|229136614|ref|ZP_04265295.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           BDRD-ST196]
 gi|228646846|gb|EEL03000.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
           BDRD-ST196]
          Length = 159

 Score = 73.0 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 52/106 (49%), Gaps = 4/106 (3%)

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            ++  +   +    G A S+ S++  AG+K       NA +++H+P  G  G A ++ + 
Sbjct: 1   MIKRHQGMKTVHVDGLAGSIASIIALAGDKL--IVPSNAYLMIHKPWSGAYGNAKELRKM 58

Query: 155 AQDIVKIKRRLNEIYVKNC--GKTYEEVEKTLDRDHIMSASEACDW 198
           A+D+  I+  +  +Y +N   G   E + + +  +  ++  +A ++
Sbjct: 59  AEDLDAIEEGIINVYKENLKDGVDIEVIREMVQNETWLNGLKASEY 104


>gi|299145813|ref|ZP_07038881.1| ATP-dependent Clp protease proteolytic subunit 2 (Endopeptidase Clp
           2) [Bacteroides sp. 3_1_23]
 gi|298516304|gb|EFI40185.1| ATP-dependent Clp protease proteolytic subunit 2 (Endopeptidase Clp
           2) [Bacteroides sp. 3_1_23]
          Length = 423

 Score = 72.6 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 69/157 (43%), Gaps = 9/157 (5%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM 108
           G+I++        + L+++      +I + INS GG V  GM  +  +Q     + T   
Sbjct: 25  GKIDEESTRNFNDEFLWIQDYVKPSKIVISINSEGGSVLYGMGTFSIIQQCPIEVETIVE 84

Query: 109 GQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           G AASM S+L +AG +   +    + +++H P      + S    + Q +   ++++  I
Sbjct: 85  GLAASMASVLWAAGTR--SYMRDYSILMIHNP--FIRDEKSCNPDNEQIVNAFQKQIETI 140

Query: 169 YVKNCGKTYEEVEKTLD-----RDHIMSASEACDWGV 200
           Y K  G T  +V + +D           A  A + G+
Sbjct: 141 YHKRFGLTKAKVREIMDGKEGCDGTYFDAKSAVNAGI 177


>gi|219854679|ref|YP_002471801.1| hypothetical protein CKR_1336 [Clostridium kluyveri NBRC 12016]
 gi|219568403|dbj|BAH06387.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 241

 Score = 72.6 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/182 (23%), Positives = 84/182 (46%), Gaps = 22/182 (12%)

Query: 41  KERIVFVTGQIEDHMA----------TLICAQLLFLEAENPQKEISLYINSPGGVVTAGM 90
           K +I+ + GQIE H+             +   L+ +E +   + + + +N+ GG V AG+
Sbjct: 47  KIQILPIIGQIEGHVTLPPETKATKYEHVIPNLILMENDPRVEGVLVVLNTVGGDVEAGL 106

Query: 91  AIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASD 150
           AI + ++ +  P  +  +G   S+G  L +A +    F  P A +++H      +G    
Sbjct: 107 AIAEMIRSLSKPTVSLVIGGGHSIGVPLATASD--YSFISPTATMIVHPIR--MNGLIIG 162

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDHIMSASEACDWGVVD 202
           + +  Q   K++ R+NE  V+    T E++   +        D   I+   +A + G++D
Sbjct: 163 VPQTFQYFNKMQERINEFIVRTSRITREKLSDLMLQSDDLLNDMGTILIGKQAVEQGLID 222

Query: 203 KV 204
           KV
Sbjct: 223 KV 224


>gi|28210969|ref|NP_781913.1| ATP-dependent Clp protease proteolytic subunit [Clostridium tetani
           E88]
 gi|28203408|gb|AAO35850.1| ATP-dependent clp protease proteolytic subunit [Clostridium tetani
           E88]
          Length = 255

 Score = 72.6 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 22/179 (12%)

Query: 44  IVFVTGQIEDHMA----------TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           I+ + GQ+E H A            +  QL+ ++ ++  + + + +N+ GG V AG+AI 
Sbjct: 62  ILPIIGQVEGHAAVPPQNKSTKYEHVIPQLVNIQMDDNIEGVLVILNTVGGDVEAGLAIA 121

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIER 153
           + +  +  P  +  +G   S+G  L +A      F  P A +++H      +G    + +
Sbjct: 122 EMIGSLGKPTVSLVIGGGHSIGVPLATAS--NYSFISPTATMIIHPIR--MNGLILGVPQ 177

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
             +   K++ R+ E  V+      E ++  +        D   I+   EA D G++D+V
Sbjct: 178 TFEYFDKMQDRIIEFIVRTSKMDKETIKDMMIKTDNLLNDMGTILIGKEAVDCGLIDEV 236


>gi|265763489|ref|ZP_06092057.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263256097|gb|EEZ27443.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 423

 Score = 72.6 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 69/157 (43%), Gaps = 9/157 (5%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM 108
           G+I++        + L+++      +I + INS GG V  GM  +  +Q     + T   
Sbjct: 25  GKIDEESTRNFNDEFLWIQDYVKPSKIIISINSEGGSVLYGMGTFSIIQQCPIEVETIVE 84

Query: 109 GQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           G AASM S+L +AG +   +    + +++H P      + S    + Q +   ++++  I
Sbjct: 85  GLAASMASVLWAAGTR--SYMRDYSILMIHNP--FIRDEKSCNPDNEQIVNAFQKQIETI 140

Query: 169 YVKNCGKTYEEVEKTLD-----RDHIMSASEACDWGV 200
           Y K  G T  +V + +D           A  A + G+
Sbjct: 141 YHKRFGLTKAKVREIMDGKEGCDGTYFDAKSAVNAGI 177


>gi|167758267|ref|ZP_02430394.1| hypothetical protein CLOSCI_00605 [Clostridium scindens ATCC 35704]
 gi|167664164|gb|EDS08294.1| hypothetical protein CLOSCI_00605 [Clostridium scindens ATCC 35704]
          Length = 241

 Score = 72.2 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 82/183 (44%), Gaps = 22/183 (12%)

Query: 40  LKERIVFVTGQIEDHMA----------TLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
            + +++ + G+IE H A            +   L  +E     + + + +N+ GG V AG
Sbjct: 38  HRIKLLTIIGEIEGHEAVAGNTKATKYEHLLPMLAEVEDSEEIEGVLILLNTMGGDVEAG 97

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
           ++I + +  +  P  +  +G + S+G  L  + +    F +P+  +++H       G   
Sbjct: 98  LSIAEMIASLSKPTVSLVLGGSHSIGGPLAVSAK--YSFIVPSGTMIIHPVRSN--GMFI 153

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDHIMSASEACDWGVV 201
            +E+  +++++ + R+     ++   T E +E+ +        D   ++   EA   G++
Sbjct: 154 GVEQSLRNMIRTQDRITRFLSQHSHMTQERIEELMLNPTELVKDVGTLLEGEEAVKEGLI 213

Query: 202 DKV 204
           D+V
Sbjct: 214 DEV 216


>gi|210612604|ref|ZP_03289395.1| hypothetical protein CLONEX_01597 [Clostridium nexile DSM 1787]
 gi|210151529|gb|EEA82536.1| hypothetical protein CLONEX_01597 [Clostridium nexile DSM 1787]
          Length = 236

 Score = 72.2 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 80/187 (42%), Gaps = 22/187 (11%)

Query: 36  YSRLLKERIVFVTGQIEDHMA----------TLICAQLLFLEAENPQKEISLYINSPGGV 85
            +R    +++ + G+IE H A            +  +L  +E     + + + +N+ GG 
Sbjct: 26  NNRKHNIQLLTIIGEIEGHEAVSGNTKATKYEHLLPKLAEVEDNEEIEGLLILLNTLGGD 85

Query: 86  VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS 145
           V AG+AI + +  +  P  +  +G + S+G  L  + +    F +P+  +++H       
Sbjct: 86  VEAGLAIAEMIASLSKPTVSLVLGGSHSIGGPLAVSAD--YSFIVPSGTMIIHPVRSN-- 141

Query: 146 GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDHIMSASEACD 197
           G    + +  +++ + + R+      +   T E +E+ +        D   ++   EA  
Sbjct: 142 GMFIGVIQSYRNMERTQDRIIRFLAGHSHMTQERIEELMLDSTQLVKDVGTLLEGEEAVK 201

Query: 198 WGVVDKV 204
            G++D V
Sbjct: 202 EGLIDAV 208


>gi|226949979|ref|YP_002805070.1| Clp protease [Clostridium botulinum A2 str. Kyoto]
 gi|226842902|gb|ACO85568.1| Clp protease [Clostridium botulinum A2 str. Kyoto]
          Length = 241

 Score = 72.2 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 8/136 (5%)

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP---ISTFCMGQAASMGSLLLSA 121
            LE    ++ I++YINS GG V A   I   +Q  K     I+    G  AS  S L   
Sbjct: 43  NLERLTGKETINMYINSCGGSVIATQGIIAMLQRAKDKGVTINATIDGLGASCSSFLPLI 102

Query: 122 GEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKI-KRRLNEIYVKNC--GKTYE 178
            +    +A  ++ +++H+P     G + +++   + + KI    +  IY+     G T +
Sbjct: 103 AD--NVYAYNSSMLMIHKPFTFAIGNSDELKAQIEMLDKIENNVMMPIYMSKVKEGITED 160

Query: 179 EVEKTLDRDHIMSASE 194
            ++  + ++  +SA E
Sbjct: 161 YIKDLVAKETWLSAKE 176


>gi|304316850|ref|YP_003851995.1| peptidase S14 ClpP [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
 gi|302778352|gb|ADL68911.1| peptidase S14 ClpP [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
          Length = 233

 Score = 72.2 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 67/156 (42%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  QL+ +E     K + + +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 61  EHIIPQLVAIEENPQIKGLLILLNTVGGDVEAGLAIAEMISSLSKPTVSIVLGGGHSIGV 120

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L         F +P+A + +H      +G    + +      K++ R+ E  ++N    
Sbjct: 121 PLAV--SSNYSFIVPSATMTIHPIR--MTGLVIGVPQTFDYFNKMQDRIVEFVIRNSRIK 176

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
            +     +        D   I+   EA D+G++D+V
Sbjct: 177 RDAFMNLMLKIGELANDVGTILVGKEAVDYGLIDEV 212


>gi|118442934|ref|YP_878200.1| ATP-dependent Clp protease proteolytic subunit [Clostridium novyi
           NT]
 gi|118133390|gb|ABK60434.1| ATP-dependent clp protease proteolytic subunit [Clostridium novyi
           NT]
          Length = 233

 Score = 71.8 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 85/192 (44%), Gaps = 24/192 (12%)

Query: 33  YDIYSRLLKER--IVFVTGQIEDHMA----------TLICAQLLFLEAENPQKEISLYIN 80
            D    + K+R  ++ + GQIE H A            +  QL+ +E  +  + + + +N
Sbjct: 24  QDPSKIIGKQRFQVLPIIGQIEGHSALPPQSKATKYEHLIPQLVDIETNDSIEGVLIILN 83

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           + GG V AG+AI + +  +  P  +  +G   S+G  L ++ +    F  P+A +++H  
Sbjct: 84  TVGGDVEAGLAIAEMINSLSKPSVSLVIGGGHSIGVPLATSAD--YSFISPSATMIIHPI 141

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDHIMSA 192
               +G    + +  +   K++ R+ +   +      E   K +        D   I+  
Sbjct: 142 R--MNGLVLGVPQTFEYFNKMQERIIDFITRTSKMKNETFRKLMLQTDDLLNDMGTILIG 199

Query: 193 SEACDWGVVDKV 204
            +A D+G++D+V
Sbjct: 200 KQAVDYGLIDEV 211


>gi|302392320|ref|YP_003828140.1| peptidase S49 [Acetohalobium arabaticum DSM 5501]
 gi|302204397|gb|ADL13075.1| peptidase S49 [Acetohalobium arabaticum DSM 5501]
          Length = 282

 Score = 71.8 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 73/177 (41%), Gaps = 21/177 (11%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  QL+ +E     K + + +N+ GG + AG+AI + +  +  P  +  +G   S+G 
Sbjct: 83  EHLIPQLVAVEQNPKVKGVIITLNTVGGDIEAGLAISEMLSSLSKPTVSLVLGGGHSIGG 142

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +         F    A + +H      +G+   + +    + K++ R+     ++   +
Sbjct: 143 PIAV--ATDKSFIAETATMTIHPIRL--TGKVIGVPQTYDYLDKMQDRVINFVSRHSNIS 198

Query: 177 YEEVEKTLDRD--------HIMSASEACDWGVVDKV---------LMSRIDIEEKSK 216
            E+    + R          ++   EA D G++D+V         L  +ID EE +K
Sbjct: 199 NEDFRNLMFRTGELVRDVGTVLIGEEAVDKGMIDEVGGLSQAIKALKEKIDAEEDNK 255


>gi|167766697|ref|ZP_02438750.1| hypothetical protein CLOSS21_01203 [Clostridium sp. SS2/1]
 gi|317497526|ref|ZP_07955845.1| Clp protease [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167711634|gb|EDS22213.1| hypothetical protein CLOSS21_01203 [Clostridium sp. SS2/1]
 gi|291558361|emb|CBL37161.1| Protease subunit of ATP-dependent Clp proteases [butyrate-producing
           bacterium SSC/2]
 gi|316895209|gb|EFV17372.1| Clp protease [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 216

 Score = 71.8 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 70/155 (45%), Gaps = 12/155 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +   L  +E +   K I + IN+ GG V  G+AI + +  +  P  +  +G + S+G 
Sbjct: 45  EHMIPALAKVEQDESIKGILILINTIGGDVECGLAIAELIASLSKPTVSLVLGGSHSIGV 104

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L  A +    F + +A +++H      SG    + +  ++I KI+ R+      +C   
Sbjct: 105 PLAVAAD--HSFIVKSATMMIHPVRS--SGTFIGVIQSYRNIEKIQDRITTFISDHCKMK 160

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDK 203
            E VE+ +        D   I+S  EA   G++D+
Sbjct: 161 KERVEELMLHIGQQVKDVGMILSGEEAVKEGLIDE 195


>gi|290343654|ref|YP_003495021.1| hypothetical protein OTV1_182 [Ostreococcus tauri virus 1]
 gi|260161069|emb|CAY39770.1| hypothetical protein OTV1_182 [Ostreococcus tauri virus 1]
          Length = 204

 Score = 71.8 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 68/169 (40%), Gaps = 11/169 (6%)

Query: 45  VFVTGQIEDHMATLICAQLLFLE---------AENPQKEISLYINSPGGVVTAGMAIYDT 95
           +   G+I              LE             + EI ++I S GG + +G  + + 
Sbjct: 37  IHFYGEITPENTLEFVENFRKLETSLLKQKADLIGYEPEIRIHIMSEGGDMFSGFTLKNV 96

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           ++  +  + T   G   S  + +   G +  R    NA +L+HQ S  F G+  D++   
Sbjct: 97  IEKSRVKVITIAQGACCSAATFMFLGGSE--RRMGENAYLLIHQLSTDFWGKYQDLKNEM 154

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           +   K    L ++Y+       ++ +K + +D  +SAS+   + +   +
Sbjct: 155 KSCDKFMASLKKMYMTKTEIPEKKFKKLMKKDLFLSASKCLKYKIAHAI 203


>gi|161899607|ref|XP_001713029.1| Clp protease [Bigelowiella natans]
 gi|75756524|gb|ABA27417.1| Clp protease [Bigelowiella natans]
          Length = 204

 Score = 71.8 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 76/162 (46%), Gaps = 7/162 (4%)

Query: 28  RGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSP----- 82
             ++ YDI S++ ++ I+F+   I   +  L+ +Q++FL      ++  ++IN+P     
Sbjct: 29  NTKKFYDISSKIYEKNIIFIGQPINTFIVQLLISQVIFLFMNRKNEKNRIFINTPYQTKN 88

Query: 83  GGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL--HQP 140
             + T+ + +Y+ +Q I+   S++ +G       L+LS+G K  R+ L N+ +L    + 
Sbjct: 89  NFLYTSDLYLYNFLQTIRFEYSSYNIGLCNYDIGLILSSGIKSNRYGLKNSIVLFTETEI 148

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
           +        D     +D++  +  +     K      E ++K
Sbjct: 149 NSKRISNKKDTVTFWKDLLYKQNLIIYNISKETQLKPETIKK 190


>gi|224025320|ref|ZP_03643686.1| hypothetical protein BACCOPRO_02059 [Bacteroides coprophilus DSM
           18228]
 gi|237711831|ref|ZP_04542312.1| predicted protein [Bacteroides sp. 9_1_42FAA]
 gi|317475026|ref|ZP_07934295.1| hypothetical protein HMPREF1016_01274 [Bacteroides eggerthii
           1_2_48FAA]
 gi|224018556|gb|EEF76554.1| hypothetical protein BACCOPRO_02059 [Bacteroides coprophilus DSM
           18228]
 gi|229454526|gb|EEO60247.1| predicted protein [Bacteroides sp. 9_1_42FAA]
 gi|316908929|gb|EFV30614.1| hypothetical protein HMPREF1016_01274 [Bacteroides eggerthii
           1_2_48FAA]
          Length = 412

 Score = 71.4 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 68/165 (41%), Gaps = 15/165 (9%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPI 103
           ++   G++ +   +    +  FLE       I + INS GG V  GM+ Y T+       
Sbjct: 20  VIRFFGRVTEETTSRFNDEFDFLENIIRPSCIRVLINSEGGSVLYGMSTYSTIANATVDT 79

Query: 104 STFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS--GGFSGQASDIERHAQDIVKI 161
                G AASM S++ +AG++        A +++H P       G+ SD+      +   
Sbjct: 80  ECIIEGVAASMASIIWAAGKR--SLMRDYAILMIHNPMLPDDDGGEPSDM------VTAF 131

Query: 162 KRRLNEIYVKNCGKTYEEVEKTLD----RD-HIMSASEACDWGVV 201
            +++  IY K  G   E V   +D    +D     A  A   G++
Sbjct: 132 TKQIETIYRKRFGLKAEHVRAIMDGQAGKDGTYFDAQAAVKAGII 176


>gi|331091074|ref|ZP_08339916.1| hypothetical protein HMPREF9477_00559 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405296|gb|EGG84832.1| hypothetical protein HMPREF9477_00559 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 226

 Score = 71.4 bits (174), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 86/199 (43%), Gaps = 22/199 (11%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMA----------TLICAQLLFLEAENPQK 73
           E    G  S     +    +++ + G+IE H A            +  +L  +E     +
Sbjct: 11  EIKEMGTLSLSHNKKRHNIQLLTIIGEIEGHEAVSGNTKATKYEHLLPKLAEVEDSEEIE 70

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
            + + +N+ GG V AG+AI + +  +  P  +  +G + S+G  L  + +    F +P+ 
Sbjct: 71  GLLILLNTLGGDVEAGLAIAEMIASLSKPSVSLVLGGSHSIGGPLAVSAD--YSFIVPSG 128

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------D 185
            +++H      SG    + +  +++ + + R+ +   ++   + E +E+ +        D
Sbjct: 129 TMVIHPVRS--SGTFIGVMQSYRNMERTQNRITKFISEHANISQERIEELMLDPTQLVKD 186

Query: 186 RDHIMSASEACDWGVVDKV 204
              ++   EA   G++D+V
Sbjct: 187 VGTMLEGEEAVKEGLIDEV 205


>gi|237795844|ref|YP_002863396.1| Clp protease family protein [Clostridium botulinum Ba4 str. 657]
 gi|229262404|gb|ACQ53437.1| Clp protease family protein [Clostridium botulinum Ba4 str. 657]
          Length = 226

 Score = 71.4 bits (174), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 74/156 (47%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  QL+ LE     + + + +N+ GG V AG+AI + ++ +  P  +  +G   S+G 
Sbjct: 55  EHLIPQLIALETSKDVEGVFIILNTVGGDVEAGLAIAEMIRSLSKPTVSLVIGGGHSIGV 114

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L ++ +    F  P A +++H      +G    + +  +   K++ R+ E  V+    +
Sbjct: 115 PLATSAD--YSFISPTATMIVHPIR--MNGLIIGVPQTFEYFNKMQERIIEFIVRTSKIS 170

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
            E++++ +        D   I+   +A + G++++V
Sbjct: 171 KEKLKEFMLQSDELLNDMGTILIGKQAVESGIINEV 206


>gi|323705387|ref|ZP_08116962.1| peptidase S14 ClpP [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535289|gb|EGB25065.1| peptidase S14 ClpP [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 232

 Score = 71.4 bits (174), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 67/156 (42%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  QL+ +E     K + + +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 61  EHIIPQLVAIEENPQIKGLLILLNTVGGDVEAGLAIAEMISSLSKPTVSIVLGGGHSIGV 120

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L         F +P+A + +H      +G    + +      K++ R+ E  ++N    
Sbjct: 121 PLAV--SSNYSFIVPSATMTIHPIR--MTGLVIGVPQTFDYFNKMQDRIVEFVIRNSRIK 176

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
            +     +        D   I+   EA D+G++D+V
Sbjct: 177 RDAFMNLMLKIGELANDVGTILVGKEAVDYGLIDEV 212


>gi|170754867|ref|YP_001781951.1| Clp protease [Clostridium botulinum B1 str. Okra]
 gi|169120079|gb|ACA43915.1| clp protease [Clostridium botulinum B1 str. Okra]
          Length = 230

 Score = 71.4 bits (174), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 74/156 (47%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  QL+ LE     + + + +N+ GG V AG+AI + ++ +  P  +  +G   S+G 
Sbjct: 55  EHLIPQLIALETSKEVEGVFIILNTVGGDVEAGLAIAEMIRSLSKPTVSLVIGGGHSIGV 114

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L ++ +    F  P A +++H      +G    + +  +   K++ R+ E  V+    +
Sbjct: 115 PLATSAD--YSFISPTATMIVHPIR--MNGLIIGVPQTFEYFNKMQERIIEFIVRTSKIS 170

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
            E++++ +        D   I+   +A + G++++V
Sbjct: 171 KEKLKEFMLQSDELLNDMGTILIGKQAVESGIINEV 206


>gi|168184614|ref|ZP_02619278.1| Clp protease [Clostridium botulinum Bf]
 gi|182672304|gb|EDT84265.1| Clp protease [Clostridium botulinum Bf]
          Length = 226

 Score = 71.4 bits (174), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 74/156 (47%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  QL+ LE     + + + +N+ GG V AG+AI + ++ +  P  +  +G   S+G 
Sbjct: 55  EHLIPQLIALETSKDVEGVFIILNTVGGDVEAGLAIAEMIRSLSKPTVSLVIGGGHSIGV 114

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L ++ +    F  P A +++H      +G    + +  +   K++ R+ E  V+    +
Sbjct: 115 PLATSAD--YSFISPTATMIVHPIR--MNGLIIGVPQTFEYFNKMQERIIEFIVRTSKIS 170

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
            E++++ +        D   I+   +A + G++++V
Sbjct: 171 KEKLKEFMLQSDELLNDMGTILIGKQAVESGIINEV 206


>gi|225567906|ref|ZP_03776931.1| hypothetical protein CLOHYLEM_03979 [Clostridium hylemonae DSM
           15053]
 gi|225163194|gb|EEG75813.1| hypothetical protein CLOHYLEM_03979 [Clostridium hylemonae DSM
           15053]
          Length = 232

 Score = 71.0 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 87/199 (43%), Gaps = 22/199 (11%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMA----------TLICAQLLFLEAENPQK 73
           E    G  + D      + +++ + G+IE H A            +   L  +E     +
Sbjct: 13  EIKEMGSINLDENKSSHRIKLLTIIGEIEGHEAVSGNTKATKYEHLLPMLAEVEDSEEIE 72

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
            + + +N+ GG V AG++I + +  +  P  +  +G + S+G  L  + +    F +P+ 
Sbjct: 73  GMLILLNTLGGDVEAGLSIAEMIASLSKPTVSLVLGGSHSIGGPLAVSAQ--YSFIVPSG 130

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------D 185
            +++H      SG    +E+  +++++ + R+     K+   + E +EK +        D
Sbjct: 131 TMIIHPVRS--SGMFIGVEQSLRNMLRTQDRITRFLSKHSNMSQERIEKLMLNPTELVKD 188

Query: 186 RDHIMSASEACDWGVVDKV 204
              ++   +A   G++D+V
Sbjct: 189 VGTLLEGEDAVKEGLIDEV 207


>gi|331269619|ref|YP_004396111.1| peptidase S14, ClpP [Clostridium botulinum BKT015925]
 gi|329126169|gb|AEB76114.1| peptidase S14, ClpP [Clostridium botulinum BKT015925]
          Length = 231

 Score = 71.0 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 70/156 (44%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  QL+ +E  +  + + + +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 58  EHVIPQLVDIEMNDDIEGVLIILNTVGGDVEAGLAIAEMISSLSKPSVSLVIGGGHSIGV 117

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L +  +    F  P+A +++H      +G    + +  +   K++ R+ +   +     
Sbjct: 118 PLATCAD--YSFISPSATMIVHPIR--MNGLVLGVPQTFEYFNKMQERIIDFIKRTSKIN 173

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
            + +   +        D   I+   +A D+G++D+V
Sbjct: 174 KDTLRSLMLQTDELLNDMGTILIGKQAVDYGLIDEV 209


>gi|187778999|ref|ZP_02995472.1| hypothetical protein CLOSPO_02594 [Clostridium sporogenes ATCC
           15579]
 gi|187772624|gb|EDU36426.1| hypothetical protein CLOSPO_02594 [Clostridium sporogenes ATCC
           15579]
          Length = 231

 Score = 71.0 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 74/156 (47%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  QL+ LE     + + + +N+ GG V AG+AI + ++ +  P  +  +G   S+G 
Sbjct: 60  EHLIPQLIALETSKEVEGVFIILNTVGGDVEAGLAIAEMIRSLSKPTVSLVIGGGHSIGV 119

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L ++ +    F  P A +++H      +G    + +  +   K++ R+ E  V+    +
Sbjct: 120 PLATSAD--YSFISPTATMIVHPIR--MNGLIIGVPQTFEYFNKMQERIIEFIVRTSKIS 175

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
            E++++ +        D   I+   +A + G++++V
Sbjct: 176 KEKLKEFMLQSDELLNDMGTILIGKQAVESGIINEV 211


>gi|313844152|ref|YP_004061815.1| hypothetical protein OlV1_183c [Ostreococcus lucimarinus virus
           OlV1]
 gi|312599537|gb|ADQ91559.1| hypothetical protein OlV1_183c [Ostreococcus lucimarinus virus
           OlV1]
          Length = 209

 Score = 71.0 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 70/169 (41%), Gaps = 11/169 (6%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQK---------EISLYINSPGGVVTAGMAIYDT 95
           +   G+I              LE    ++         EI ++I S GG + +G  + + 
Sbjct: 42  IHFYGEITPENTLEFVESFRKLETHLLKQKADLIGYEPEIRIHIMSEGGDMFSGFTLKNV 101

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           ++  +  + T   G   S  + +   G +  R    NA IL+HQ S  F G+  +++   
Sbjct: 102 IEKSRVKVVTIAQGACCSAATFMFLGGSE--RRMGENAYILIHQLSTDFWGKYHELKTEM 159

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           +   +  + L ++Y+       ++ +K + +D  +SAS+   + +   +
Sbjct: 160 KSCDEFMKSLKKMYMTKTEIPEKKFKKLMKKDLFLSASKCLKYKIAHAI 208


>gi|148380363|ref|YP_001254904.1| Clp protease [Clostridium botulinum A str. ATCC 3502]
 gi|153932771|ref|YP_001384583.1| Clp protease [Clostridium botulinum A str. ATCC 19397]
 gi|153934679|ref|YP_001388099.1| Clp protease [Clostridium botulinum A str. Hall]
 gi|153941144|ref|YP_001391706.1| Clp protease [Clostridium botulinum F str. Langeland]
 gi|168180713|ref|ZP_02615377.1| clp protease [Clostridium botulinum NCTC 2916]
 gi|170759121|ref|YP_001787719.1| Clp protease [Clostridium botulinum A3 str. Loch Maree]
 gi|226949761|ref|YP_002804852.1| Clp protease family protein [Clostridium botulinum A2 str. Kyoto]
 gi|148289847|emb|CAL83955.1| translocation-enhancing protein TepA [Clostridium botulinum A str.
           ATCC 3502]
 gi|152928815|gb|ABS34315.1| Clp protease family protein [Clostridium botulinum A str. ATCC
           19397]
 gi|152930593|gb|ABS36092.1| Clp protease family protein [Clostridium botulinum A str. Hall]
 gi|152937040|gb|ABS42538.1| clp protease [Clostridium botulinum F str. Langeland]
 gi|169406110|gb|ACA54521.1| Clp protease family protein [Clostridium botulinum A3 str. Loch
           Maree]
 gi|182668575|gb|EDT80554.1| clp protease [Clostridium botulinum NCTC 2916]
 gi|226841950|gb|ACO84616.1| Clp protease family protein [Clostridium botulinum A2 str. Kyoto]
 gi|295319734|gb|ADG00112.1| clp protease [Clostridium botulinum F str. 230613]
 gi|322806674|emb|CBZ04243.1| translocation-enhancing protein TepA [Clostridium botulinum H04402
           065]
          Length = 230

 Score = 71.0 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 74/156 (47%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  QL+ LE     + + + +N+ GG V AG+AI + ++ +  P  +  +G   S+G 
Sbjct: 55  EHLIPQLIALETSKEVEGVFIILNTVGGDVEAGLAIAEMIRSLSKPTVSLVIGGGHSIGV 114

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L ++ +    F  P A +++H      +G    + +  +   K++ R+ E  V+    +
Sbjct: 115 PLATSAD--YSFISPTATMIVHPIR--MNGLIIGVPQTFEYFNKMQERIIEFIVRTSKIS 170

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
            E++++ +        D   I+   +A + G++++V
Sbjct: 171 KEKLKEFMLQSDELLNDMGTILIGKQAVESGIINEV 206


>gi|254519174|ref|ZP_05131230.1| peptidase S14 [Clostridium sp. 7_2_43FAA]
 gi|226912923|gb|EEH98124.1| peptidase S14 [Clostridium sp. 7_2_43FAA]
          Length = 246

 Score = 71.0 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 70/155 (45%), Gaps = 12/155 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  QL+ +E  +  K + + +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 72  EHVIPQLIAMERNDNVKGVLIILNTVGGDVEAGLAIAEMINSLSKPTVSIVIGGGHSIGV 131

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L ++      F  P+A +++H      +G    + +      K++ R++   V+     
Sbjct: 132 PLATSSS--YSFITPSATMIVHPIR--MNGFVIGVAQTFNYFQKMQERIDNFIVRTSKIK 187

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDK 203
            +E+ + +        D   I+   +A + G++D+
Sbjct: 188 KDELRQMMLKSDELLNDMGTILIGKQAVECGLIDE 222


>gi|110803390|ref|YP_698964.1| Clp protease [Clostridium perfringens SM101]
 gi|168207521|ref|ZP_02633526.1| clp protease [Clostridium perfringens E str. JGS1987]
 gi|169342742|ref|ZP_02863782.1| clp protease [Clostridium perfringens C str. JGS1495]
 gi|110683891|gb|ABG87261.1| putative endopeptidase [Clostridium perfringens SM101]
 gi|169299248|gb|EDS81318.1| clp protease [Clostridium perfringens C str. JGS1495]
 gi|170661146|gb|EDT13829.1| clp protease [Clostridium perfringens E str. JGS1987]
          Length = 229

 Score = 71.0 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 73/156 (46%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  QL+ +E  +  K I   +N+ GG V AG+AI + ++ +K P  +  +G   S+G 
Sbjct: 57  EHMIPQLIDIEQNDRIKGILFVLNTVGGDVEAGLAIAEMIRSLKKPTVSLVIGGGHSIGV 116

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L +A +    F  P+A +++H      +G    + +      K++ R+N+  ++     
Sbjct: 117 PLATASK--YSFISPSATMIIHPIR--MNGLVIGVPQTFNYFNKMQERINDFIIRTSEIK 172

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
            + ++K +        D   I+   EA   G++++V
Sbjct: 173 LDVLKKMMMQTDELLNDMGTILVGEEAVKCGLINEV 208


>gi|18310659|ref|NP_562593.1| Clp protease [Clostridium perfringens str. 13]
 gi|18145340|dbj|BAB81383.1| conserved hypothetical protein [Clostridium perfringens str. 13]
          Length = 247

 Score = 71.0 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 73/156 (46%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  QL+ +E  +  K I   +N+ GG V AG+AI + ++ +K P  +  +G   S+G 
Sbjct: 75  EHMIPQLIDIEQNDRIKGILFVLNTVGGDVEAGLAIAEMIRSLKKPTVSLVIGGGHSIGV 134

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L +A +    F  P+A +++H      +G    + +      K++ R+N+  ++     
Sbjct: 135 PLATASQ--YSFISPSATMIIHPIR--MNGLVIGVPQTFNYFNKMQERINDFIIRTSEIK 190

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
            + ++K +        D   I+   EA   G++++V
Sbjct: 191 LDVLKKMMMQTDELLNDMGTILVGEEAVKCGLINEV 226


>gi|15895087|ref|NP_348436.1| periplasmic serine protease [Clostridium acetobutylicum ATCC 824]
 gi|15024785|gb|AAK79776.1|AE007690_3 Periplasmic serine protease, YMFB B.subtilis ortholog [Clostridium
           acetobutylicum ATCC 824]
 gi|325509225|gb|ADZ20861.1| Periplasmic serine protease [Clostridium acetobutylicum EA 2018]
          Length = 226

 Score = 71.0 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 69/156 (44%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  +L+ +E     K + + +N+ GG V AG+AI + ++ +  P  +  +G   S+G 
Sbjct: 56  EEIIPRLMNVEYNPEIKGVLIILNTIGGDVEAGLAIAEMIRSLSKPTVSLVIGGGHSIGV 115

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L +       F  P A +++H      +G    + +  Q   K++ R++E  V+     
Sbjct: 116 PLAT--SSNYSFISPTATMIIHPIR--MNGLIIGVPQTFQYFNKMQERISEFIVRTSKIK 171

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
            E + + +        D   I+   +A  +G++D V
Sbjct: 172 KETLTELMLKTDELLNDMGTILIGKQAVKYGLIDSV 207


>gi|110799331|ref|YP_696364.1| Clp protease [Clostridium perfringens ATCC 13124]
 gi|168211435|ref|ZP_02637060.1| clp protease [Clostridium perfringens B str. ATCC 3626]
 gi|168214490|ref|ZP_02640115.1| clp protease [Clostridium perfringens CPE str. F4969]
 gi|168216964|ref|ZP_02642589.1| clp protease [Clostridium perfringens NCTC 8239]
 gi|182626367|ref|ZP_02954121.1| clp protease [Clostridium perfringens D str. JGS1721]
 gi|110673978|gb|ABG82965.1| clp protease [Clostridium perfringens ATCC 13124]
 gi|170710555|gb|EDT22737.1| clp protease [Clostridium perfringens B str. ATCC 3626]
 gi|170714034|gb|EDT26216.1| clp protease [Clostridium perfringens CPE str. F4969]
 gi|177908318|gb|EDT70866.1| clp protease [Clostridium perfringens D str. JGS1721]
 gi|182380948|gb|EDT78427.1| clp protease [Clostridium perfringens NCTC 8239]
          Length = 229

 Score = 70.7 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 73/156 (46%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  QL+ +E  +  K I   +N+ GG V AG+AI + ++ +K P  +  +G   S+G 
Sbjct: 57  EHMIPQLIDIEQNDRIKGILFVLNTVGGDVEAGLAIAEMIRSLKKPTVSLVIGGGHSIGV 116

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L +A +    F  P+A +++H      +G    + +      K++ R+N+  ++     
Sbjct: 117 PLATASQ--YSFISPSATMIIHPIR--MNGLVIGVPQTFNYFNKMQERINDFIIRTSEIK 172

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
            + ++K +        D   I+   EA   G++++V
Sbjct: 173 LDVLKKMMMQTDELLNDMGTILVGEEAVKCGLINEV 208


>gi|125973612|ref|YP_001037522.1| ATP-dependent Clp protease proteolytic subunit ClpP [Clostridium
           thermocellum ATCC 27405]
 gi|256003432|ref|ZP_05428423.1| peptidase S14 ClpP [Clostridium thermocellum DSM 2360]
 gi|281417817|ref|ZP_06248837.1| peptidase S14 ClpP [Clostridium thermocellum JW20]
 gi|125713837|gb|ABN52329.1| ATP-dependent Clp protease proteolytic subunit ClpP [Clostridium
           thermocellum ATCC 27405]
 gi|255992722|gb|EEU02813.1| peptidase S14 ClpP [Clostridium thermocellum DSM 2360]
 gi|281409219|gb|EFB39477.1| peptidase S14 ClpP [Clostridium thermocellum JW20]
 gi|316940146|gb|ADU74180.1| peptidase S14 ClpP [Clostridium thermocellum DSM 1313]
          Length = 257

 Score = 70.7 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 79/202 (39%), Gaps = 24/202 (11%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMA----------TLICAQLLFLEAE 69
           P   E    G+ S  I S       + V GQIE HM             +  QL+ +E  
Sbjct: 25  PEFEEIKELGKTS--ISSSKGNIHCLTVIGQIEGHMVLPPQNKTTKYEHVIPQLVAIEES 82

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
                + L +N+ GG V AG+AI + +  +  P  +  +G   S+G  +         F 
Sbjct: 83  EEIDGLLLILNTVGGDVEAGLAIAEMIASMSKPTVSLVLGGGHSIGVPMAV--ATNYSFI 140

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL----- 184
            P+A + +H       G    + +  +   +++ R+ +   KN   + E   + +     
Sbjct: 141 APSATMTIHPIRLN--GMVIGVPQTYEYFDRMQDRVVQFVTKNSNISKERFRELMLKTGE 198

Query: 185 ---DRDHIMSASEACDWGVVDK 203
              D   I+   EA  +G++D+
Sbjct: 199 LANDVGTILFGEEAVKYGLIDE 220


>gi|116050125|ref|YP_791059.1| hypothetical protein PA14_36350 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115585346|gb|ABJ11361.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 184

 Score = 70.7 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/172 (25%), Positives = 75/172 (43%), Gaps = 14/172 (8%)

Query: 41  KERIVFVTGQIEDHM-ATLI--CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97
           K+ I+  TG I       LI  CA++L  EAE    E+ + I + GG  + G  +Y+ ++
Sbjct: 3   KQHIIHFTGPINSSTCGNLINTCAKILQQEAE----ELRINIATMGGECSYGFTLYNFLR 58

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG--QASDIERHA 155
            +  PI T  +G   SMG++L  AGE+  R A  +++ L H       G    + +  +A
Sbjct: 59  ALPVPIHTHNLGTVESMGNILFLAGER--RSASAHSKFLFHPFHWTLHGAVDHARMAEYA 116

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEK---TLDRDHIMSASEACDWGVVDKV 204
             +         I  +N     E ++     +    I+   +A   G++  V
Sbjct: 117 MSLDYDLELYARIVAENTRDAPERLDIPSYLMAYPRILGPEDALACGLIHTV 168


>gi|253682717|ref|ZP_04863514.1| putative Clp protease [Clostridium botulinum D str. 1873]
 gi|253562429|gb|EES91881.1| putative Clp protease [Clostridium botulinum D str. 1873]
          Length = 231

 Score = 70.7 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 69/156 (44%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  QL+ +E  +  + + + +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 58  EHVIPQLVDIEMNDAIEGVLIILNTVGGDVEAGLAIAEMISSLSKPSVSLVIGGGHSIGV 117

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L +       F  P+A +++H      +G    + +  +   K++ R+ +   +     
Sbjct: 118 PLATCA--NYSFISPSATMIVHPIR--MNGLVLGVPQTFEYFNKMQERIIDFIKRTSKIN 173

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
            + +   +        D   I+   +A D+G++D+V
Sbjct: 174 KDTLRSLMLQTDELLNDMGTILIGKQAVDYGLIDEV 209


>gi|253578408|ref|ZP_04855680.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850726|gb|EES78684.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 234

 Score = 70.7 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 89/197 (45%), Gaps = 22/197 (11%)

Query: 26  TNRGERSYDIYSRLLKERIVFVTGQIEDHMA----------TLICAQLLFLEAENPQKEI 75
            + G+   +  SR  K  ++ + G++E H +            +  +L  +E +   + +
Sbjct: 24  KDMGQVVLNSNSRKHKVELLTIIGEVEGHESAPSHSKTTKYEHVLPKLAIIEDDEEIEGL 83

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            + +N+ GG V AG+AI + +  +  P  +  +G   S+G  +  + +    FA+P+A +
Sbjct: 84  LILLNTVGGDVEAGLAIAEMIASLSIPTVSLVLGGGHSIGVPMAVSAD--YSFAVPSATM 141

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRD 187
           ++H       G    + +  +++ KI+ R+     ++   + + +E+ +        D  
Sbjct: 142 VIHPVRSN--GMFIGVAQTYRNMEKIQDRITTFISEHSKASQKRLEELMLDTSQLVKDVG 199

Query: 188 HIMSASEACDWGVVDKV 204
            ++   EA   G++D+V
Sbjct: 200 TMLEGKEAVKEGLIDEV 216


>gi|260642126|ref|ZP_05859260.1| ATP-dependent Clp protease proteolytic subunit [Bacteroides
           finegoldii DSM 17565]
 gi|260623285|gb|EEX46156.1| ATP-dependent Clp protease proteolytic subunit [Bacteroides
           finegoldii DSM 17565]
          Length = 239

 Score = 70.3 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--DRDHIMSAS 193
           +LH   GG  G   +++   ++I  ++  L E+Y    GK  EE+       +DH + A 
Sbjct: 1   MLHSVQGGCYGNKDEMKDCIREIEALEDTLCEMYATRMGKDKEEIRAMYFDGKDHWLRAD 60

Query: 194 EACDWGVVDKV 204
           EA   G++D +
Sbjct: 61  EALALGLIDGI 71


>gi|312961447|ref|ZP_07775950.1| clp protease (protease subunit) [Pseudomonas fluorescens WH6]
 gi|311284342|gb|EFQ62920.1| clp protease (protease subunit) [Pseudomonas fluorescens WH6]
          Length = 183

 Score = 70.3 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 67/167 (40%), Gaps = 8/167 (4%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
            ++  TG +     + +  +   L  +     + L I + GG  + G  +Y+ +  +  P
Sbjct: 4   HVINFTGPVSASTCSQLIEK-ASLAVQRDASGLVLNIATMGGECSYGFTMYNFLLSLPIP 62

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG--QASDIERHAQDIVK 160
           + T  +G   SMG+++  AGE+  R A  +++ L H       G    S +  +A  +  
Sbjct: 63  VHTHNLGTVESMGNIIFLAGER--RTACRHSKFLFHPFHWHLQGAVDHSRMSEYAMSLDY 120

Query: 161 IKRRLNEIYVKNCGKTYEEVEK---TLDRDHIMSASEACDWGVVDKV 204
             +    I  +      E++E     +    I+   +A   G++  +
Sbjct: 121 DLQLYARIVAERTPDAAEKLETEKYLIAAPRILDPQQALAAGLIHGI 167


>gi|152985368|ref|YP_001348470.1| hypothetical protein PSPA7_3110 [Pseudomonas aeruginosa PA7]
 gi|150960526|gb|ABR82551.1| putative Clp protease [Pseudomonas aeruginosa PA7]
          Length = 184

 Score = 70.3 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 75/169 (44%), Gaps = 14/169 (8%)

Query: 41  KERIVFVTGQIEDHM-ATLI--CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97
           K+ I+  TG I       LI  CA+ L  EAE    E+ + I + GG  + G  +Y+ ++
Sbjct: 3   KQHIIHFTGPINSSTCGNLINTCAKALQQEAE----ELRINIATMGGECSYGFTLYNFLR 58

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG--QASDIERHA 155
            +  P+ T  +G   SMG++L  AGE+  R A  +++ L H       G    + +  +A
Sbjct: 59  ALPVPVHTHNLGTVESMGNILFLAGER--RSACAHSKFLFHPFHWTLHGAVDHARMAEYA 116

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEK---TLDRDHIMSASEACDWGVV 201
             +    +   +I  ++     E ++     +    I+   +A   G++
Sbjct: 117 MSLDYDLQLYAQIVAEHTRDAPERLDIPRYLMAYPRILGPDDALACGLI 165


>gi|254240611|ref|ZP_04933933.1| hypothetical protein PA2G_01270 [Pseudomonas aeruginosa 2192]
 gi|296389396|ref|ZP_06878871.1| hypothetical protein PaerPAb_14651 [Pseudomonas aeruginosa PAb1]
 gi|313110977|ref|ZP_07796817.1| hypothetical protein PA39016_002870053 [Pseudomonas aeruginosa
           39016]
 gi|126193989|gb|EAZ58052.1| hypothetical protein PA2G_01270 [Pseudomonas aeruginosa 2192]
 gi|310883319|gb|EFQ41913.1| hypothetical protein PA39016_002870053 [Pseudomonas aeruginosa
           39016]
          Length = 184

 Score = 70.3 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/172 (25%), Positives = 75/172 (43%), Gaps = 14/172 (8%)

Query: 41  KERIVFVTGQIEDHM-ATLI--CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97
           K+ I+  TG I       LI  CA++L  EAE    E+ + I + GG  + G  +Y+ ++
Sbjct: 3   KQHIIHFTGPINSSTCGNLINTCAKVLQQEAE----ELRINIATMGGECSYGFTLYNFLR 58

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG--QASDIERHA 155
            +  PI T  +G   SMG++L  AGE+  R A  +++ L H       G    + +  +A
Sbjct: 59  ALPVPIHTHNLGTVESMGNILFLAGER--RSASAHSKFLFHPFHWTLHGAVDHARMAEYA 116

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEK---TLDRDHIMSASEACDWGVVDKV 204
             +         I  +N     E ++     +    I+   +A   G++  V
Sbjct: 117 MSLDYDLELYARIVAENTRDAPERLDIPSYLMAYPRILGPEDALACGLIHTV 168


>gi|193875740|gb|ACF24506.1| chloroplast ATP-dependent Clp protease proteolytic subunit 4
           [Gymnochlora stellata]
          Length = 184

 Score = 70.3 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 68/172 (39%), Gaps = 8/172 (4%)

Query: 42  ERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY-------INSPGGVVTAGMAIYD 94
           + I+++  QI          +L++ +    +  I++Y              +    +IYD
Sbjct: 12  KNIIYLNDQINIENLKFFTGKLIYFKKNKTKGIINIYHGKTNNKFAISDNKIDVVTSIYD 71

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIER 153
            M      I T C+G A     L++S G+K  R++L N+    +  S  +    A  +  
Sbjct: 72  LMNIYGNQIHTTCLGIAEDEFGLIMSFGKKKSRYSLINSTFYFNNLSMYYKYDNALSLGL 131

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           +  +I K    +  I      K    + +       +S+ EA + G++D ++
Sbjct: 132 YKSEIQKQFFVMLNILSSQTSKPVVYLWEYYSYPKFLSSIEAKELGIIDTII 183


>gi|295696208|ref|YP_003589446.1| peptidase S14 ClpP [Bacillus tusciae DSM 2912]
 gi|295411810|gb|ADG06302.1| peptidase S14 ClpP [Bacillus tusciae DSM 2912]
          Length = 257

 Score = 70.3 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 81/198 (40%), Gaps = 29/198 (14%)

Query: 25  QTNRGERSYDIYSRLLKERIVFVTGQIEDHMA----------TLICAQLLFLEAENPQKE 74
           QT   E   D+Y        + + GQIE H+             +  QL+  E  +  K 
Sbjct: 41  QTQVPEVDSDLY-------CITIIGQIEGHIILPPQNKTTKYEHVIPQLVAAEQNDKVKG 93

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           + + +N+ GG V AG+AI + +  +  P  T  +G   S+G  +  AG+    F   +A 
Sbjct: 94  VLIVLNTVGGDVEAGLAIAEMIATLTKPTVTLVLGGGHSIGVPIAVAGQ--YSFIAESAT 151

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL------DRD- 187
           + +H      +G         + + +++ R+    V +   +  +  + +       RD 
Sbjct: 152 MTIHPIRL--TGMVIGAPASWEYLERMQERVVRFVVDHSKISEAQFRELMMKTGELARDI 209

Query: 188 -HIMSASEACDWGVVDKV 204
              +   +A  +G++D++
Sbjct: 210 GTTVVGKDAVRYGLIDEI 227


>gi|15597385|ref|NP_250879.1| hypothetical protein PA2189 [Pseudomonas aeruginosa PAO1]
 gi|107101615|ref|ZP_01365533.1| hypothetical protein PaerPA_01002659 [Pseudomonas aeruginosa PACS2]
 gi|218891858|ref|YP_002440725.1| hypothetical protein PLES_31361 [Pseudomonas aeruginosa LESB58]
 gi|254235215|ref|ZP_04928538.1| hypothetical protein PACG_01105 [Pseudomonas aeruginosa C3719]
 gi|9948210|gb|AAG05577.1|AE004645_11 hypothetical protein PA2189 [Pseudomonas aeruginosa PAO1]
 gi|126167146|gb|EAZ52657.1| hypothetical protein PACG_01105 [Pseudomonas aeruginosa C3719]
 gi|218772084|emb|CAW27863.1| hypothetical protein PLES_31361 [Pseudomonas aeruginosa LESB58]
          Length = 184

 Score = 70.3 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/172 (25%), Positives = 75/172 (43%), Gaps = 14/172 (8%)

Query: 41  KERIVFVTGQIEDHM-ATLI--CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97
           K+ I+  TG I       LI  CA++L  EAE    E+ + I + GG  + G  +Y+ ++
Sbjct: 3   KQHIIHFTGPINSSTCGNLINTCAKVLQQEAE----ELRINIATMGGECSYGFTLYNFLR 58

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG--QASDIERHA 155
            +  PI T  +G   SMG++L  AGE+  R A  +++ L H       G    + +  +A
Sbjct: 59  ALPVPIHTHNLGTVESMGNILFLAGER--RSASAHSKFLFHPFHWTLHGAVDHARMAEYA 116

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEK---TLDRDHIMSASEACDWGVVDKV 204
             +         I  +N     E ++     +    I+   +A   G++  V
Sbjct: 117 MSLDYDLELYARIVAENTRDAPERLDIPRYLMAYPRILGPEDALACGLIHTV 168


>gi|311030070|ref|ZP_07708160.1| protein export-enhancing factor [Bacillus sp. m3-13]
          Length = 252

 Score = 69.9 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 86/199 (43%), Gaps = 29/199 (14%)

Query: 25  QTNRGERSYDIYSRLLKERIVFVTGQIEDHMA----------TLICAQLLFLEAENPQKE 74
           QTN  +   D      K   + + GQIE H+             +  Q++ +E     + 
Sbjct: 35  QTNVAQMPPDS-----KIHCLTIVGQIEGHVQLPPQNKTTKYEHVIPQIVAIEQNPNIEG 89

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           + + +N+ GG V AG+AI + +  +  P  +  +G   S+G  +  + +    F    A 
Sbjct: 90  LLVILNTVGGDVEAGLAISEMLASLSKPTVSLVLGGGHSIGVPIAVSCD--YSFIAETAT 147

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL------DRD- 187
           + +H      +G    + +  + + K++ R+     KN G   E+ ++ +       RD 
Sbjct: 148 MTIHPVRL--TGLVIGVPQTFEYLDKMQDRVINFVTKNSGIPEEKFKELMLSKGNLTRDI 205

Query: 188 --HIMSASEACDWGVVDKV 204
             +++ A  A ++G++D+V
Sbjct: 206 GTNVVGAD-AVEYGLIDQV 223


>gi|291542999|emb|CBL16109.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ruminococcus
           bromii L2-63]
          Length = 269

 Score = 69.9 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 76/174 (43%), Gaps = 18/174 (10%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +   L+ +E +     + + IN+ GG V AG+AI + +  +K P  +  +G   S+G 
Sbjct: 84  EHVIPLLVSVEEDERIDGLLVLINTVGGDVEAGLAIAEVISGMKKPTVSIVLGGGHSIGI 143

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L  A +K   F   +A + +H      +G    + +  +   +++ R+     +N   T
Sbjct: 144 PLAVAAKK--SFIAKSASMTVHPVRT--TGLTLGVPQTFEYFQRMQDRITTFVAENSNIT 199

Query: 177 YEEVEKT--------LDRDHIMSASEACDWGVVDKV------LMSRIDIEEKSK 216
            +   +         +D   I+   EA + G++D+V      + +  D+ ++SK
Sbjct: 200 KDRYNQLVLNTGELVMDIGTILEGEEAVEEGLIDEVGTVSDAIDALYDLIKESK 253


>gi|313618496|gb|EFR90497.1| peptidase S14, ClpP [Listeria innocua FSL S4-378]
          Length = 132

 Score = 69.9 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 35/70 (50%)

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++H P+    G   D++R  + + ++K  +   Y    G +  ++   +D +  M+A++A
Sbjct: 1   MIHNPATITMGDHEDMKRAIEMLDEVKESIINAYEIKTGVSRIKLSHLMDAETWMNANKA 60

Query: 196 CDWGVVDKVL 205
            + G  D VL
Sbjct: 61  IELGFADDVL 70


>gi|158320570|ref|YP_001513077.1| peptidase S14 ClpP [Alkaliphilus oremlandii OhILAs]
 gi|158140769|gb|ABW19081.1| peptidase S14 ClpP [Alkaliphilus oremlandii OhILAs]
          Length = 245

 Score = 69.5 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  QL+ +E +   K + + +N+ GG V AG+AI + +  +  P  T  +G   S+G 
Sbjct: 76  EHIIPQLVAVEEDPKIKGLLVILNTMGGDVEAGLAIAELIGSLSKPTVTLVIGGGHSIGV 135

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L +AG+    F  P A + +H      +G    I +  +  +K++ R+    ++     
Sbjct: 136 PLATAGD--YSFIAPTATMTIHPIR--MNGLVIGIPQTFRYFLKMQERIINFVLRTSNVE 191

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
            E     +        D   I+   EA   G++D+V
Sbjct: 192 RETFTSLMNATDELANDVGTILIGEEAVHHGLIDEV 227


>gi|168187899|ref|ZP_02622534.1| Clp protease [Clostridium botulinum C str. Eklund]
 gi|169294242|gb|EDS76375.1| Clp protease [Clostridium botulinum C str. Eklund]
          Length = 232

 Score = 69.5 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 70/156 (44%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  QL+ +E  +  + + + +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 60  EHLIPQLVDIETNDAIEGVLIILNTVGGDVEAGLAIAEMINSLSKPSVSLVIGGGHSIGV 119

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L ++ +    F  P+A +++H      +G    + +  +   K++ R+ +   +     
Sbjct: 120 PLATSAD--YSFISPSATMIIHPIR--MNGLVLGVPQTFEYFNKMQERIIDFITRTSKMK 175

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
            E     +        D   I+   +A D+G++D+V
Sbjct: 176 NETFRSLMLQTDELLNDMGTILIGKQAVDYGLIDEV 211


>gi|213161814|ref|ZP_03347524.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
          enterica subsp. enterica serovar Typhi str. E00-7866]
          Length = 87

 Score = 69.5 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/52 (61%), Positives = 44/52 (84%), Gaps = 2/52 (3%)

Query: 1  MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIE 52
          MS+ G  ++D+    + LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+E
Sbjct: 37 MSYSG--ERDNLAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVE 86


>gi|212639505|ref|YP_002316025.1| protease subunit of ATP-dependent Clp protease [Anoxybacillus
           flavithermus WK1]
 gi|212560985|gb|ACJ34040.1| Protease subunit of ATP-dependent Clp protease [Anoxybacillus
           flavithermus WK1]
          Length = 237

 Score = 69.1 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 72/156 (46%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  Q++ +E     + + + +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 61  EHLIPQIVAIEQNPNIEGLLVVLNTVGGDVEAGLAIAEMLASMSKPTVSIVLGGGHSIGV 120

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +  + +    F    A + +H      +G    + +  + + K++ R+    VK+   +
Sbjct: 121 PIAVSCD--YSFIAETATMTIHPIRL--TGLVIGVPQTFEYLDKMQERVVNFVVKHSNIS 176

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            E++++ +       RD    +  ++A  +G++D+V
Sbjct: 177 EEKLKELMFSKGNLTRDIGTNVVGTDAVKYGLIDEV 212


>gi|169334787|ref|ZP_02861980.1| hypothetical protein ANASTE_01193 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257525|gb|EDS71491.1| hypothetical protein ANASTE_01193 [Anaerofustis stercorihominis DSM
           17244]
          Length = 272

 Score = 69.1 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 70/156 (44%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I   ++ +E ++  K + L +N+ GG V AG+AI + +  +  P  T  +G + S+G 
Sbjct: 70  EHIIPMIIDVEEKDEIKGVLLILNTMGGDVEAGLAISELISGMSKPCVTLVLGGSHSIGV 129

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L  +G     F +P A +++H      +G    + +      K++ R+ E  V++    
Sbjct: 130 PLAVSGS--YSFIVPTATMMIHPIRT--TGLVIGVLQSFLYFQKMQERITEFVVEHSNVD 185

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
            E   K +        D   ++   +A + G++D V
Sbjct: 186 KELFNKIMLNTDELVNDMGSVLVGEQAVEIGLIDAV 221


>gi|323701887|ref|ZP_08113557.1| peptidase S14 ClpP [Desulfotomaculum nigrificans DSM 574]
 gi|323533191|gb|EGB23060.1| peptidase S14 ClpP [Desulfotomaculum nigrificans DSM 574]
          Length = 272

 Score = 68.7 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 70/168 (41%), Gaps = 12/168 (7%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
           + +  Q +      I  QL+ +E     + + L +N+ GG V AG+AI + +  +  P  
Sbjct: 83  IMLPSQNKTTKYEHIIPQLVGIEQAEDIEGVLLILNTVGGDVEAGLAIAEVIATMTKPTV 142

Query: 105 TFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRR 164
           +  +G   S+G  +         F  P A + +H       G    + +    + K++ R
Sbjct: 143 SLVLGGGHSIGVPIAV--SSNYSFIAPTASMTIHPIRLN--GLVIGVPQTYDYLDKMQDR 198

Query: 165 LNEIYVKNCGKTYEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
           +     ++   + ++    +       RD   ++   +A ++G++D+V
Sbjct: 199 VIRFVTEHSKISEQKFRDLMFKTGELARDIGTVVIGKDAVEYGLIDEV 246


>gi|291545835|emb|CBL18943.1| Protease subunit of ATP-dependent Clp proteases [Ruminococcus sp.
           SR1/5]
          Length = 237

 Score = 68.7 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 88/199 (44%), Gaps = 26/199 (13%)

Query: 26  TNRGERSYDIYSRLLKERIVFVTGQIEDHMA----------TLICAQLLFLEAENPQKEI 75
              G+   D  SR  K  ++ V G+IE H +            +  +L  +E +   + +
Sbjct: 24  RETGQAVLDGNSRKHKVELLTVIGEIEGHESAPSHSKTTKYEHVLPKLALIEDDEEIEGL 83

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            + +N+ GG V AG+AI + +  +  P  +  +G   S+G  +  + +    F +P+A +
Sbjct: 84  LILLNTVGGDVEAGLAIAEMIASLSIPTVSLVLGGGHSIGVPMAVSAD--YSFIVPSATM 141

Query: 136 LLHQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------D 185
           ++H     G F G A    +  +++ KI+ R+      +   T E +E+ +        D
Sbjct: 142 VVHPVRQNGMFIGVA----QSYRNMEKIQDRIIAFVSGHSHITAERMEELMLDTSQLVKD 197

Query: 186 RDHIMSASEACDWGVVDKV 204
              ++   EA   G++D+V
Sbjct: 198 VGTMLEGEEAVKEGLIDEV 216


>gi|193875744|gb|ACF24508.1| chloroplast ATP-dependent Clp protease proteolytic subunit 6
           [Gymnochlora stellata]
          Length = 207

 Score = 68.7 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 83/194 (42%), Gaps = 8/194 (4%)

Query: 19  VPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLY 78
           +P V +          I S+L +  ++++   I  +++ LI + + + +       +S++
Sbjct: 15  LPKVYKSFRYMRNKSYITSQLFENDLIYICLPINSNVSRLIMSPVFWYKHSKV-PLLSIF 73

Query: 79  INSPGGVVTAGM--AIY--DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           +NSP  +    +   IY  + +  +    +T  +G      SLLL+AG    R+ L N++
Sbjct: 74  LNSPEYLNKEILFNEIYLINFILTLNIQFTTTNLGLCYGDLSLLLAAGNINDRYMLKNSK 133

Query: 135 ILLHQPS---GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
            +LH        +    +  +++ ++ +    ++   Y +     Y  +     R     
Sbjct: 134 CILHNIHNKHTIYEMYHTFFKKYWKEYIINHHKIMLYYQQFTSLGYNNINNITARKLYFK 193

Query: 192 ASEACDWGVVDKVL 205
           A E   +G++DK++
Sbjct: 194 AIECKQYGIIDKII 207


>gi|251797382|ref|YP_003012113.1| peptidase S14 ClpP [Paenibacillus sp. JDR-2]
 gi|247545008|gb|ACT02027.1| peptidase S14 ClpP [Paenibacillus sp. JDR-2]
          Length = 247

 Score = 68.7 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 69/156 (44%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  QL+  E  +  + I + +N+ GG V AG+AI + +  +  P  T  +G   S+G 
Sbjct: 69  EHLIPQLVAAEQNSKIEGILIVLNTVGGDVEAGLAIAEMISSLSKPTVTLVLGGGHSIGV 128

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +  AG   M F    A + +H       G    + +  + + K++ R+ +    +   T
Sbjct: 129 PIAVAG--NMSFIAATATMTIHPIRLN--GLVIGVPQTFEYLDKMQERILKFVTMHSNVT 184

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            E+ ++ +       RD    +  S+A  +G++D V
Sbjct: 185 EEKFKELMFKTGELTRDIGTTVIGSDAVKYGLIDAV 220


>gi|170758843|ref|YP_001786833.1| prophage LambdaBa02, Clp protease family protein [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169405832|gb|ACA54243.1| prophage LambdaBa02, Clp protease family protein [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 187

 Score = 68.4 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 8/124 (6%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPP---ISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           +YINS GG V A   I   +Q  K     I++   G  AS  S L    +    +A  ++
Sbjct: 1   MYINSCGGSVIATQGIIAMLQRAKDKGVTINSTIDGLGASCSSFLPLIAD--NVYAYNSS 58

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKI-KRRLNEIYVKNC--GKTYEEVEKTLDRDHIM 190
            +++H+P     G A +++   + + KI    +  IY+     G T + ++  + ++  +
Sbjct: 59  MLMIHKPFTFAVGNADELKAQIEVLDKIENNVMMPIYMSKAKEGITEDHIKDLVAKETWL 118

Query: 191 SASE 194
           SA E
Sbjct: 119 SAKE 122


>gi|325661480|ref|ZP_08150105.1| hypothetical protein HMPREF0490_00839 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472196|gb|EGC75409.1| hypothetical protein HMPREF0490_00839 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 232

 Score = 68.4 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 82/197 (41%), Gaps = 22/197 (11%)

Query: 26  TNRGERSYDIYSRLLKERIVFVTGQIEDHMA----------TLICAQLLFLEAENPQKEI 75
              G    D      + +++ + G+IE H A            +  +L  +E       +
Sbjct: 21  KEMGALELDKDREKHRIQLLTIIGEIEGHEAVSGNTKATKYEHLLPKLAEIEDNEEIDGV 80

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            + +N+ GG V AG+AI + +  +  P  +  +G + S+G  L  + +    F +P+  +
Sbjct: 81  LILLNTMGGDVEAGLAIAEMIASLSKPTVSLVLGGSHSIGGPLAVSAD--YSFIVPSGTM 138

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRD 187
           ++H      +G    + +  +++ + + R+     ++   + E VE+ +        D  
Sbjct: 139 IVHPVRS--TGMFIGVLQSYKNMERTQDRITRFLAEHSRISQERVEELMLDSTQLVKDVG 196

Query: 188 HIMSASEACDWGVVDKV 204
            ++   +A   G++D V
Sbjct: 197 TLLEGEDAVREGLIDAV 213


>gi|331084073|ref|ZP_08333180.1| hypothetical protein HMPREF0992_02104 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330402435|gb|EGG82005.1| hypothetical protein HMPREF0992_02104 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 234

 Score = 68.4 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 67/155 (43%), Gaps = 12/155 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  +L  +E       + + +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 61  EHVLPKLAMIEDSKETDGLLILLNTVGGDVEAGLAIAEMIASLSKPTVSLVLGGGHSIGV 120

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +  + +    + +P+A +++H       G    + +  +++ KI+ R+      +    
Sbjct: 121 PMAVSAD--YSYIVPSATMVIHPVRSN--GMFIGVMQTYRNMEKIQDRITRFIASHSKMP 176

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDK 203
            + +E+ +        D   ++   EA   G++D+
Sbjct: 177 QKRIEQLMLDTSQLVKDVGTMLEGEEAVKEGLIDE 211


>gi|110633689|ref|YP_673897.1| peptidase S14, ClpP [Mesorhizobium sp. BNC1]
 gi|110284673|gb|ABG62732.1| peptidase S14, ClpP [Chelativorans sp. BNC1]
          Length = 234

 Score = 68.4 bits (166), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 72/166 (43%), Gaps = 10/166 (6%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQ-KEISLYINSPGGVVTAGMAIYDTMQFIKP 101
           ++ FV    E  +A  + + L  L +E+   + I LYINSPGG + +  A Y  ++    
Sbjct: 42  KVFFVGEVTERKVA-ELVSVLDRLNSEHKALQSIYLYINSPGGDMDSAQAAYWAIKSSPI 100

Query: 102 PISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG---FSGQASDIERHAQDI 158
           P+    +   AS+ +++     +  R A PN   +L   S      S Q    E   + +
Sbjct: 101 PVIAVNISTVASVAAVMFCGAAE--RAAFPNTYFILKPASVTLPEMSMQPVHFELSRELL 158

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLD-RDHIM--SASEACDWGVV 201
                    +Y +    + +E+   ++  D+ +   ASEA + G++
Sbjct: 159 KSYNEVFESVYRECTSLSADEISAVIESEDNRLLVRASEAREKGII 204


>gi|260587637|ref|ZP_05853550.1| translocation-enhancing protein TepA [Blautia hansenii DSM 20583]
 gi|260541902|gb|EEX22471.1| translocation-enhancing protein TepA [Blautia hansenii DSM 20583]
          Length = 256

 Score = 68.4 bits (166), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 67/155 (43%), Gaps = 12/155 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  +L  +E       + + +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 83  EHVLPKLAMIEDSKETDGLLILLNTVGGDVEAGLAIAEMIASLSKPTVSLVLGGGHSIGV 142

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +  + +    + +P+A +++H       G    + +  +++ KI+ R+      +    
Sbjct: 143 PMAVSAD--YSYIVPSATMVIHPVRSN--GMFIGVMQTYRNMEKIQDRITRFIASHSKMP 198

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDK 203
            + +E+ +        D   ++   EA   G++D+
Sbjct: 199 QKRIEQLMLDTSQLVKDVGTMLEGEEAVKEGLIDE 233


>gi|313901853|ref|ZP_07835274.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Thermaerobacter subterraneus DSM 13965]
 gi|313467896|gb|EFR63389.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Thermaerobacter subterraneus DSM 13965]
          Length = 324

 Score = 68.0 bits (165), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 71/156 (45%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  QL+ +E     K + + +N+ GG V AG+A+ + ++ +  P  +  +G   S+G 
Sbjct: 95  EHIIPQLVAVEQNPAIKGLLVILNTVGGDVEAGLALAELIRSLSKPKVSIVLGGGHSIGV 154

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +  A +  + F  P A + +H      +G    + +  + + K++ R+    V+N   +
Sbjct: 155 PIAVAAD--VSFIAPTATMTIHPIRL--TGLVIGVPQSYEYLDKMQERIIRFVVENSRIS 210

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            +   + +       RD   ++   +A   G++D+V
Sbjct: 211 RDRFRELMFRTGELARDIGTVLVGEDAVREGLIDEV 246


>gi|169838667|ref|ZP_02871855.1| ATP-dependent Clp protease proteolytic subunit [candidate
          division TM7 single-cell isolate TM7a]
          Length = 65

 Score = 68.0 bits (165), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 34/52 (65%), Positives = 44/52 (84%)

Query: 20 PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENP 71
          P+V+E   RGERSYDIYSRLLK+RI+FV+G++ED MA  I AQLLFL+A++ 
Sbjct: 14 PVVIENDGRGERSYDIYSRLLKDRIIFVSGEVEDGMANAIVAQLLFLDAQDN 65


>gi|317121875|ref|YP_004101878.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Thermaerobacter marianensis DSM 12885]
 gi|315591855|gb|ADU51151.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Thermaerobacter marianensis DSM 12885]
          Length = 347

 Score = 68.0 bits (165), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 71/156 (45%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  QL+ +E     K + + +N+ GG V AG+A+ + ++ +  P  +  +G   S+G 
Sbjct: 94  EHIIPQLVAVEQNPAIKGLLVILNTVGGDVEAGLALAELIRSLSKPKVSIVLGGGHSIGV 153

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +  A +  + F  P A + +H      +G    + +  + + K++ R+    V+N   +
Sbjct: 154 PIAVAAD--ISFIAPTATMTIHPIRL--TGLVIGVPQSYEYLDKMQERIIRFVVENSRIS 209

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            +   + +       RD   ++   +A   G++D+V
Sbjct: 210 RDRFRELMFRTGELARDIGTVLVGEDAVREGLIDEV 245


>gi|331084957|ref|ZP_08334044.1| hypothetical protein HMPREF0987_00347 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408657|gb|EGG88122.1| hypothetical protein HMPREF0987_00347 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 229

 Score = 67.6 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 82/197 (41%), Gaps = 22/197 (11%)

Query: 26  TNRGERSYDIYSRLLKERIVFVTGQIEDHMA----------TLICAQLLFLEAENPQKEI 75
              G    D      + +++ + G+IE H A            +  +L  +E       +
Sbjct: 18  KEMGALELDKDREKHRIQLLTIIGEIEGHEAVSGNTKATKYEHLLPKLAEIEDNEEIDGV 77

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            + +N+ GG V AG+AI + +  +  P  +  +G + S+G  L  + +    F +P+  +
Sbjct: 78  LILLNTMGGDVEAGLAIAEMIASLSKPTVSLVLGGSHSIGGPLAVSAD--YSFIVPSGTM 135

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRD 187
           ++H      +G    + +  +++ + + R+     ++   + + VE+ +        D  
Sbjct: 136 IVHPVRS--TGMFIGVLQSYKNMERTQDRITRFLAEHSRISQDRVEELMLDSTQLVKDVG 193

Query: 188 HIMSASEACDWGVVDKV 204
            ++   +A   G++D V
Sbjct: 194 TLLEGEDAVREGLIDAV 210


>gi|294673677|ref|YP_003574293.1| putative Clp protease [Prevotella ruminicola 23]
 gi|294473420|gb|ADE82809.1| putative Clp protease [Prevotella ruminicola 23]
          Length = 365

 Score = 67.6 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 69/147 (46%), Gaps = 14/147 (9%)

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           +++   E+++ I+S GG  +  ++I+   +     ++   +G  AS  + + S G K + 
Sbjct: 33  SKHKDTEVNVLIDSLGGQSSTALSIFSAFKLHG-NVNVHFVGMNASAAT-IASLGAKHI- 89

Query: 128 FALPNARILLHQPSGGF--SGQ---------ASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
               +A  L+H+ S GF   GQ          ++IE    D+ K+   + ++Y   C K 
Sbjct: 90  TMDSSAMYLVHKCSVGFFEWGQLNSDGLQALIANIEHQKADLDKLDANIAQMYATRCKKE 149

Query: 177 YEEVEKTLDRDHIMSASEACDWGVVDK 203
            E +   +     ++A EA +WG VD+
Sbjct: 150 PEALLALMKEGGWLTAKEALEWGFVDE 176


>gi|296132914|ref|YP_003640161.1| peptidase S49 [Thermincola sp. JR]
 gi|296031492|gb|ADG82260.1| peptidase S49 [Thermincola potens JR]
          Length = 270

 Score = 67.2 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 68/156 (43%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  QL+ LE     + + + +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 93  EHIIPQLVALEENPEIEGVLVVLNTIGGDVEAGLAIAEMITSMSKPTVSLVLGGGHSIGV 152

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +         F    A + +H      +G    + +  + + K++ R+    +K+   +
Sbjct: 153 PIAV--ATDYSFIAETAGMTVHPIRL--TGLVIGVPQTYEYLDKMQDRVVNFIIKHSKIS 208

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
             ++ + +       RD   ++   +A D G++D+V
Sbjct: 209 EAKLRELMFRTGELARDIGAVLIGKDAVDVGLIDEV 244


>gi|288556926|ref|YP_003428861.1| hypothetical protein BpOF4_19650 [Bacillus pseudofirmus OF4]
 gi|288548086|gb|ADC51969.1| hypothetical protein BpOF4_19650 [Bacillus pseudofirmus OF4]
          Length = 249

 Score = 66.8 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 70/156 (44%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  QL+ +E     + + L +N+ GG V AG+AI + +  +  P  T  +G   S+G 
Sbjct: 70  EHIIPQLVAVEQNPKIEGLLLILNTVGGDVEAGLAISEMVASMSKPSVTLVLGGGHSIGV 129

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +  A      F    A + +H      +G    + +  + + K++ R+     +  G +
Sbjct: 130 PIAVAA--NYSFIAKTATMTIHPVRL--TGLVIGVPQTFEYLDKMQERVISFVTQQSGIS 185

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            E+ ++ +       RD    +  ++A ++G++D+V
Sbjct: 186 EEKFKELMLSKGNLTRDIGTNVVGTDAVEYGLIDEV 221


>gi|757799|emb|CAA59932.1| ATP dependent casein protease [Campylobacter jejuni]
          Length = 49

 Score = 66.4 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/48 (60%), Positives = 40/48 (83%)

Query: 18 LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF 65
           +P V+E+++RGERSYDIYSRLLK+RI+ ++G+I D +A  I AQLLF
Sbjct: 2  FIPYVIEKSSRGERSYDIYSRLLKDRIIMLSGEIHDELAASIVAQLLF 49


>gi|229544380|ref|ZP_04433439.1| peptidase S14 ClpP [Bacillus coagulans 36D1]
 gi|229325519|gb|EEN91195.1| peptidase S14 ClpP [Bacillus coagulans 36D1]
          Length = 245

 Score = 66.4 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 68/157 (43%), Gaps = 14/157 (8%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  QL+ +E     + + + +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 66  EHMIPQLVAIEQNPKIEGVLVILNTVGGDVEAGLAISEMLASLSKPTVSIVLGGGHSIGV 125

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +  +      F    A + +H      +G    + +  + + K++ R+ +   ++    
Sbjct: 126 PIAVSCS--YSFIAETATMTIHPIRL--TGLVIGVPQTFEYLDKMQERVIKFVTRHS-HV 180

Query: 177 YEEVEKT-------LDRD--HIMSASEACDWGVVDKV 204
            EEV K        L RD    +   EA  +G++D+V
Sbjct: 181 EEEVFKDLMFAKGNLTRDIGTNIVGQEAVQYGLIDEV 217


>gi|315648078|ref|ZP_07901179.1| peptidase S14 ClpP [Paenibacillus vortex V453]
 gi|315276724|gb|EFU40067.1| peptidase S14 ClpP [Paenibacillus vortex V453]
          Length = 258

 Score = 66.0 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 68/156 (43%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  QL+  E     + + + +N+ GG V AG+AI + +  +  P  T  +G   S+G 
Sbjct: 80  EHMIPQLVAAEQNPRIEGLLIILNTVGGDVEAGLAIAEMIASLSKPTVTVVIGGGHSIGV 139

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +  A +        +A + +H      SG    + +  + + K++ R+      + G T
Sbjct: 140 PIAVAADH--SIIAESATMTIHPIR--MSGLVIGVPQTFEYMEKMQERVVRFVTSHSGIT 195

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            E  +  +      +RD    +S  +A  +G++D+V
Sbjct: 196 EERFKNLMFATGELNRDIGTAVSGVDAVKYGLMDEV 231


>gi|193875742|gb|ACF24507.1| chloroplast ATP-dependent Clp protease proteolytic subunit 5
           [Gymnochlora stellata]
          Length = 183

 Score = 66.0 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 81/178 (45%), Gaps = 3/178 (1%)

Query: 29  GERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTA 88
            + +  +++    + I+F+   I++H++ +I +++ +L  ++    ++  INS GG +  
Sbjct: 7   NQIAMKVFNMKSFDNIIFIKSYIDNHISKIILSKVFYLVNQDITNNMNFLINSSGGDIKE 66

Query: 89  GMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQA 148
            + + + +  +    ++  +G+     + +L+      R   PNA + +           
Sbjct: 67  ILILLEYLDSLSLMYTSVGLGKIIGGSAFILATAN-NNRILYPNAILGMQIMKDNSVNNE 125

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKT-YEEVEKTLDRDHIMSASEACDWGVVDKVL 205
             +  ++ D+ ++   L   YV+   K  + ++ +   R+   +  EA   G++D+V+
Sbjct: 126 ETLVNYSNDLARL-SLLFSRYVRITKKAQFTKIIEKHQRNVYFTPKEALQLGIIDRVI 182


>gi|160934088|ref|ZP_02081475.1| hypothetical protein CLOLEP_02951 [Clostridium leptum DSM 753]
 gi|156866761|gb|EDO60133.1| hypothetical protein CLOLEP_02951 [Clostridium leptum DSM 753]
          Length = 291

 Score = 66.0 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 67/155 (43%), Gaps = 12/155 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  QL+ +E E     + + +N+ GG V AG+AI + +  +K P  +  +G   S+G 
Sbjct: 86  EHVLPQLVAIEEEPRIDGLLVLLNTVGGDVEAGLAIAELLAGMKKPTVSMVLGGGHSIGV 145

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L  A +K   F   +A + +H      SG    + +  +   +++ R+     +N   T
Sbjct: 146 PLAVAAKK--SFIAKSASMTIHPVR--MSGLVLGVPQTLEYFQRMQDRITSFVAENSNIT 201

Query: 177 YEEVEKT--------LDRDHIMSASEACDWGVVDK 203
            E   +         +D   ++   +A   G++D+
Sbjct: 202 PERFYELSMNTEELVMDVGTVLDGEDAVKEGLIDR 236


>gi|303239203|ref|ZP_07325732.1| peptidase S49 [Acetivibrio cellulolyticus CD2]
 gi|302593248|gb|EFL62967.1| peptidase S49 [Acetivibrio cellulolyticus CD2]
          Length = 269

 Score = 66.0 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 61/154 (39%), Gaps = 12/154 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  QL+ +E       + L +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 85  EHVIPQLVAIEESKEIDGLLLILNTVGGDVEAGLAIAEMIASMSKPTVSLVLGGGHSIGV 144

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +         F  P+A + +H       G    + +  +   K++ R+ +   KN   +
Sbjct: 145 PMAV--STKYSFIAPSATMTIHPIRLN--GMVIGVPQTFEYFDKMQERVVQFVAKNSNIS 200

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVD 202
            E     +        D   I+   EA   G++D
Sbjct: 201 KETFRSLMLKTGELANDVGTILFGEEAVTQGLID 234


>gi|197303368|ref|ZP_03168407.1| hypothetical protein RUMLAC_02090 [Ruminococcus lactaris ATCC
           29176]
 gi|197297366|gb|EDY31927.1| hypothetical protein RUMLAC_02090 [Ruminococcus lactaris ATCC
           29176]
          Length = 259

 Score = 66.0 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 68/156 (43%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  +L   E  +  + + + +N+ GG V AG+ I + +  +  P  +  +G + S+G 
Sbjct: 72  EHLLPRLAEAEENDEIEGVLILLNTMGGDVEAGLGIAEMIASLGKPTVSLVLGGSHSIGG 131

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L  + +    F +P+  +++H      SG    + +  +++ + + R+      +   +
Sbjct: 132 PLAVSAD--YSFIVPSGTMIIHPVRS--SGMFIGVIQSYRNMERTQDRITRFIASHSHIS 187

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
            E + + +        D   ++   EA   G++D+V
Sbjct: 188 QERIVELMLDSTQLVKDVGTMLEGEEAVREGMIDEV 223


>gi|154502755|ref|ZP_02039815.1| hypothetical protein RUMGNA_00569 [Ruminococcus gnavus ATCC 29149]
 gi|153796638|gb|EDN79058.1| hypothetical protein RUMGNA_00569 [Ruminococcus gnavus ATCC 29149]
          Length = 229

 Score = 66.0 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 71/156 (45%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  +L  +E ++    + + +N+ GG V AG+AI + +  +  P  +  +G + S+G 
Sbjct: 59  EHLIPRLAEVEDDDEVDGVLILLNTLGGDVEAGLAIAEMIASLSKPTVSLVLGGSHSIGG 118

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L  + +    F +P+  +++H      SG    + +  +++ K + R+      +   T
Sbjct: 119 PLAVSAD--YSFIVPSGTMIVHPVRS--SGMFIGVIQSYRNMEKTQDRITRFIAAHSQIT 174

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
            E +E+ +        D   ++   +A   G++D+V
Sbjct: 175 KERLEELMLDSTQLVKDVGTMLEGEDAVREGMIDEV 210


>gi|253573584|ref|ZP_04850927.1| peptidase S14 ClpP [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251847112|gb|EES75117.1| peptidase S14 ClpP [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 253

 Score = 65.7 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 68/156 (43%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  QL+  E     + + + +N+ GG V AG+AI + +  +  P  T  +G   S+G 
Sbjct: 74  EHVIPQLVAAEQNPRIEGLLIILNTVGGDVEAGLAIAEMIASLSKPTVTVVIGGGHSIGV 133

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +  A +        +A + +H      +G    + +  + I K++ R+      +   +
Sbjct: 134 PIAVASD--YSLIAESATMTIHPIR--MTGLVIGVPQTFEYIEKMQERVVRFVTTHSKIS 189

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            E+ ++ +      +RD    +  S+A  +G++D +
Sbjct: 190 EEKFKELMFKTGELNRDIGTAVGGSDAVKYGLIDAI 225


>gi|326791245|ref|YP_004309066.1| peptidase S14 ClpP [Clostridium lentocellum DSM 5427]
 gi|326542009|gb|ADZ83868.1| peptidase S14 ClpP [Clostridium lentocellum DSM 5427]
          Length = 279

 Score = 65.7 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 76/179 (42%), Gaps = 22/179 (12%)

Query: 43  RIVFVTGQIEDHMA----------TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI 92
             + + GQ+E HM+            I  Q++ L  +   K I + +N+ GG V AG+A+
Sbjct: 82  HCITIIGQVEGHMSLPPQNKTTKYEHIIPQMVGLCDDPKIKGILIILNTVGGDVEAGLAL 141

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIE 152
            + +  +  P  +  +G A S+G  +  A +    F  P A + +H      +G    ++
Sbjct: 142 AELIASVNKPTVSLVLGGAHSIGVPIAVASD--YSFITPTATMTIHPVR--MNGTVIGVQ 197

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL------DRD--HIMSASEACDWGVVDK 203
           +  +   +++ R+     +N        ++ +       RD   I+   EA D  ++D+
Sbjct: 198 QTFEFFDQMQERIVAFVARNSHIEETRFKELMLSVGKLARDVGTILVGQEAVDEKIIDE 256


>gi|160892565|ref|ZP_02073355.1| hypothetical protein CLOL250_00094 [Clostridium sp. L2-50]
 gi|156865606|gb|EDO59037.1| hypothetical protein CLOL250_00094 [Clostridium sp. L2-50]
          Length = 219

 Score = 65.7 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 72/156 (46%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  +L  ++ +   K + + +N+ GG V AG+AI + +  I  P+ T  +G + S+G 
Sbjct: 53  EHVLPELAVVQDDESIKGVLVLLNTVGGDVEAGLAIAEMLASISKPVVTLVLGGSHSIGV 112

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L  +G+  + F +P A +++H      S     + ++ + I +++ R+ +    +    
Sbjct: 113 PLAVSGD--VSFIVPTATMVVHPLR--VSDTVLGVRQNYEYIERMQDRIIQFTSCHSKID 168

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
            + +   +        D   ++   EA   G++D++
Sbjct: 169 EDSLRSIMFNTQELSKDIGSVLVGKEAVKCGIIDRI 204


>gi|153853239|ref|ZP_01994648.1| hypothetical protein DORLON_00633 [Dorea longicatena DSM 13814]
 gi|149754025|gb|EDM63956.1| hypothetical protein DORLON_00633 [Dorea longicatena DSM 13814]
          Length = 250

 Score = 65.7 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 79/183 (43%), Gaps = 22/183 (12%)

Query: 40  LKERIVFVTGQIEDHMA----------TLICAQLLFLEAENPQKEISLYINSPGGVVTAG 89
            + +++ + G+IE H A            +   L  +E  +    + + +N+ GG V AG
Sbjct: 47  HRIKLLTIVGEIEGHEAVSGNTKATKYEHLLPMLAEVEDSSKIDGLLILLNTLGGDVEAG 106

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
           ++I + +  +  P  +  +G + S+G  L  + +    F +P+  +++H       G   
Sbjct: 107 LSIAEMIASLSKPTVSLVLGGSHSIGGPLAVSAD--YSFIVPSGTMVIHPVRSN--GMFI 162

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDHIMSASEACDWGVV 201
            +++   ++++ + R+     ++     E +E+ +        D   ++   +A   G++
Sbjct: 163 GVQQSLDNMIRTQDRITRFLSEHSSMKQERIEELMLNPTELVKDVGTLLEGKDAVREGLI 222

Query: 202 DKV 204
           D V
Sbjct: 223 DAV 225


>gi|153816437|ref|ZP_01969105.1| hypothetical protein RUMTOR_02690 [Ruminococcus torques ATCC 27756]
 gi|317500190|ref|ZP_07958422.1| translocation-enhancing protein TepA [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331087582|ref|ZP_08336512.1| hypothetical protein HMPREF1025_00095 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145846225|gb|EDK23143.1| hypothetical protein RUMTOR_02690 [Ruminococcus torques ATCC 27756]
 gi|316898405|gb|EFV20444.1| translocation-enhancing protein TepA [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330400453|gb|EGG80086.1| hypothetical protein HMPREF1025_00095 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 235

 Score = 65.3 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 78/177 (44%), Gaps = 21/177 (11%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  +L  +E ++    + + +N+ GG V AG+AI + +  +  P  +  +G + S+G 
Sbjct: 57  EHLLPRLAQIEEDDETDGVLILLNTLGGDVEAGLAIAEMIASLSKPTVSLVLGGSHSIGG 116

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L  + +    F +P   +++H      +G    + +  +++ K + R+ +    +   T
Sbjct: 117 PLAVSAD--YSFIVPTGTMIVHPVRS--TGMFIGVMQSYRNMEKTQDRITKFIASHSNIT 172

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDKV---------LMSRIDIEEKSK 216
            + + + +        D   ++   +A   G++D+V         L S ID E++ +
Sbjct: 173 QDRLLELMLDSSQLVKDVGTMLEGEQAVKEGMIDEVGGIKEAFAKLHSLIDKEKEKQ 229


>gi|319902220|ref|YP_004161948.1| peptidase S14 ClpP [Bacteroides helcogenes P 36-108]
 gi|319417251|gb|ADV44362.1| peptidase S14 ClpP [Bacteroides helcogenes P 36-108]
          Length = 378

 Score = 65.3 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 62/154 (40%), Gaps = 15/154 (9%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
            + L + S GG V   +AI + +      ++   +G  AS  + + + G + +       
Sbjct: 60  PVRLKVTSYGGDVAEAVAISNLLAEHG-DVTVEFIGFNASAATWM-AFGARSIEIHEDAM 117

Query: 134 RILLHQPSG-GFSG--QASDIERHAQDIVKIKR-------RLNEIYVKNCGKTYEEVEKT 183
            +      G    G      +E   +++   ++        + + Y   C KT ++V   
Sbjct: 118 WLAHKSSIGVDIYGSLNVDQLEEKIRELENARKNAEAIDLMIAKKYADRCKKTVKDVIGL 177

Query: 184 LDRDHIMSASEACDWGVVDKV---LMSRIDIEEK 214
           +     M +SEA DWG VDKV   +  RI I ++
Sbjct: 178 MSESRWMPSSEAKDWGFVDKVIPGINKRIQITDE 211


>gi|299131681|ref|ZP_07024876.1| peptidase S14 ClpP [Afipia sp. 1NLS2]
 gi|298591818|gb|EFI52018.1| peptidase S14 ClpP [Afipia sp. 1NLS2]
          Length = 193

 Score = 65.3 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 57/133 (42%), Gaps = 3/133 (2%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K I L   + GG +  G+++Y+  +     I  + +G  +S+G +      +  R A  +
Sbjct: 44  KRIHLLFQTTGGGIGEGISLYNLFRSSPVEIHLYNVGSVSSIGVIAYLGATR--RIASKH 101

Query: 133 ARILLHQPS-GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           +  ++H+      +  A  +   A+ +     R   I  ++      + E+    D  +S
Sbjct: 102 SAFMIHRSYLSPVAANADRMAASAEYLAIEDTRTESILKEHTKIPPTKWEQHKFSDVWIS 161

Query: 192 ASEACDWGVVDKV 204
           + EA  +G+ +++
Sbjct: 162 SEEAKSFGIAEEI 174


>gi|225572062|ref|ZP_03780926.1| hypothetical protein RUMHYD_00356 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040497|gb|EEG50743.1| hypothetical protein RUMHYD_00356 [Blautia hydrogenotrophica DSM
           10507]
          Length = 248

 Score = 65.3 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 86/197 (43%), Gaps = 22/197 (11%)

Query: 26  TNRGERSYDIYSRLLKERIVFVTGQIEDHMA----------TLICAQLLFLEAENPQKEI 75
            + G+ + +  S   +  ++ + G++E H +            +  +L  +E +     +
Sbjct: 21  KDMGQVTLEENSGKHRIHLLTIIGEVEGHESAPNHSKTTKYEHVLPKLAMIEDDQNVDGL 80

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            + +N+ GG V AG+AI + +  +  P  +  +G   S+G  +  + +    F +P+A +
Sbjct: 81  LVLLNTVGGDVEAGLAIAEMIASLSVPTVSLVLGGGHSIGVPMAVSAD--YSFVVPSATM 138

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRD 187
           ++H       G    + +  +++ KI+ R+      +   T + +E+ +        D  
Sbjct: 139 VIHPVRSN--GMFIGVAQTYRNMEKIQDRITSFIAGHSHITQQRLEELMLDTSQLVKDVG 196

Query: 188 HIMSASEACDWGVVDKV 204
            ++   +A   G++D+V
Sbjct: 197 TMLEGEDAVREGLIDEV 213


>gi|295399870|ref|ZP_06809851.1| peptidase S14 ClpP [Geobacillus thermoglucosidasius C56-YS93]
 gi|312111618|ref|YP_003989934.1| peptidase S14 ClpP [Geobacillus sp. Y4.1MC1]
 gi|294978273|gb|EFG53870.1| peptidase S14 ClpP [Geobacillus thermoglucosidasius C56-YS93]
 gi|311216719|gb|ADP75323.1| peptidase S14 ClpP [Geobacillus sp. Y4.1MC1]
          Length = 243

 Score = 65.3 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 69/156 (44%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  Q++ +E     + + + +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 66  EHVIPQIVAIEQNQNIEGLLVILNTVGGDVEAGLAIAEMLASLSKPTVSIVLGGGHSIGV 125

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +  + +    F    A + +H      +G    + +  + + K++ R+     K+   T
Sbjct: 126 PIAVSCD--YSFITETATMTIHPIRL--TGLVIGVPQTFEYLDKMQERVVRFVTKHSKIT 181

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            E+ ++ +       RD    +   +A  +G++D+V
Sbjct: 182 EEKFKELMFSKGNLTRDIGTNVVGPDAVKYGLIDEV 217


>gi|134299785|ref|YP_001113281.1| peptidase S14, ClpP [Desulfotomaculum reducens MI-1]
 gi|134052485|gb|ABO50456.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Desulfotomaculum reducens MI-1]
          Length = 276

 Score = 65.3 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 73/168 (43%), Gaps = 12/168 (7%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
           + +  Q +      I  QL+ +E ++  + + L +N+ GG V AG+AI + +  +  P  
Sbjct: 87  IMLPAQNKTTKYEHIIPQLVGIEQDDNVEGVLLVLNTVGGDVEAGLAIAEVVATMTKPTV 146

Query: 105 TFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRR 164
           T  +G   S+G  +  + +    +  P A + +H       G    + +    + K++ R
Sbjct: 147 TLVLGGGHSIGVPIAVSSK--YSYIAPTASMTIHPIRLN--GLVIGVPQTYDYLDKMQDR 202

Query: 165 LNEIYVKNCGKTYEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
           +     ++   T E+  + +       RD   ++   +A + G++D V
Sbjct: 203 VIRFVTEHSRVTEEKFRQLMFKTGELARDIGTVVIGKDAVETGLIDAV 250


>gi|239826674|ref|YP_002949298.1| peptidase S14 ClpP [Geobacillus sp. WCH70]
 gi|239806967|gb|ACS24032.1| peptidase S14 ClpP [Geobacillus sp. WCH70]
          Length = 245

 Score = 65.3 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 69/156 (44%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  Q++ +E     + + + +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 68  EHVIPQIVAIEQNQNIEGLLVILNTVGGDVEAGLAIAEMLASLSKPTVSIVLGGGHSIGV 127

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +  + +    F    A + +H      +G    + +  + + K++ R+     K+   T
Sbjct: 128 PIAVSCD--YSFITETATMTIHPVRL--TGLVIGVPQTFEYLDKMQERVVRFVTKHSKIT 183

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            E+ ++ +       RD    +   +A  +G++D+V
Sbjct: 184 EEKFKELMFSKGNLTRDIGTNVVGPDAVKYGLIDEV 219


>gi|188586087|ref|YP_001917632.1| ATP-dependent Clp protease proteolytic subunit ClpP [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179350774|gb|ACB85044.1| ATP-dependent Clp protease proteolytic subunit ClpP [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 280

 Score = 64.9 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 66/156 (42%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  QL+  E     + I + +N+ GG V AG+AI + +  I  P  +  +G   S+G 
Sbjct: 72  EHVLPQLVAAEQNPQVEGILVILNTVGGDVEAGLAIAEMLDSISKPSVSLVLGGGHSIGV 131

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +         +    A + +H      +GQ   + +    + K++ R+     ++ G  
Sbjct: 132 PIAV--ATDYSYIAQTATMTIHPIRL--TGQLIGVPQTYDYLEKMQDRVLSFVTQHSGIH 187

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            E++ + +       RD   ++   +A   G++++V
Sbjct: 188 PEQLRRLMFNSGQLARDIGTVLVGEDAVREGLINEV 223


>gi|293115362|ref|ZP_05791142.2| Clp protease [Butyrivibrio crossotus DSM 2876]
 gi|292810238|gb|EFF69443.1| Clp protease [Butyrivibrio crossotus DSM 2876]
          Length = 211

 Score = 64.9 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 67/155 (43%), Gaps = 12/155 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  +L+ +E  +    +   IN+ GG V+AG+AI + +  +  P  +  +G++ S+G 
Sbjct: 39  DEIIPRLVSIENNDDVDGVLFVINTMGGDVSAGLAIAEMIAGLSKPTVSLVIGESHSIGV 98

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +  A      F + +A +++H      +G      +  +    I+ R+     ++    
Sbjct: 99  PIAVAA--NYSFIVKSATVVIHPVR--MTGTILGTRQTYRQFRSIQDRIVRFISEHSRCG 154

Query: 177 YEEVEKTLDR--------DHIMSASEACDWGVVDK 203
            E +EK +            I+   EA + G++D+
Sbjct: 155 EESIEKMMMDTSMMSSDLGTILVGEEAVEAGLIDE 189


>gi|138894799|ref|YP_001125252.1| translocation-enhancing protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|196247576|ref|ZP_03146278.1| peptidase S14 ClpP [Geobacillus sp. G11MC16]
 gi|134266312|gb|ABO66507.1| Translocation-enhancing protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|196212360|gb|EDY07117.1| peptidase S14 ClpP [Geobacillus sp. G11MC16]
          Length = 245

 Score = 64.9 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 69/157 (43%), Gaps = 14/157 (8%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  Q++ +E     + + + +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 68  EHVIPQIVAIEQNPKIEGLLVILNTVGGDVEAGLAIAEMLASLSKPTVSVVLGGGHSIGV 127

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +  +      F    A + +H      +G    + +  + + K++ R+     K+   +
Sbjct: 128 PIAVSC--NYSFITETATMTIHPIRL--TGLVIGVPQTFEYLDKMQERVVRFVTKHSNIS 183

Query: 177 YEEVEKTL------DRD---HIMSASEACDWGVVDKV 204
            E+ ++ +       RD   +++    A  +G++D+V
Sbjct: 184 EEKFKELMFSKGNLTRDIGTNVIGPD-AVQYGLIDEV 219


>gi|238917241|ref|YP_002930758.1| ATP-dependent Clp protease, protease subunit [Eubacterium eligens
           ATCC 27750]
 gi|238872601|gb|ACR72311.1| ATP-dependent Clp protease, protease subunit [Eubacterium eligens
           ATCC 27750]
          Length = 236

 Score = 64.5 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 68/156 (43%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  +L  +E +   K +   +N+ GG V+AG+A+ + +  +K P  +  +G + S+G 
Sbjct: 68  EHMLPKLAEIEMDKDIKGVLFIMNTVGGDVSAGLALAEMIASMKKPTVSLIIGDSHSIGV 127

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L         F +P A +++H      +G    +++      +I  R+      +   +
Sbjct: 128 PLAV--STDYSFIVPTATMIIHPVR--MNGTLIGVQQTYDYFERISDRITSFIATHSNVS 183

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
            E VEK +        D   ++   +A + G++ +V
Sbjct: 184 KERVEKMMVDTTQLSKDLGTVLVGRQAVEEGLICEV 219


>gi|319649503|ref|ZP_08003659.1| TepA protein [Bacillus sp. 2_A_57_CT2]
 gi|317398665|gb|EFV79347.1| TepA protein [Bacillus sp. 2_A_57_CT2]
          Length = 246

 Score = 64.5 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 71/157 (45%), Gaps = 14/157 (8%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  Q++ +E     + + + +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 69  EHLIPQIVAIEQNPKIEGLLVILNTVGGDVEAGLAISEMLASLSKPTVSIVLGGGHSIGV 128

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +  + +    F    A + +H      +G    + +  + + K++ R+     K+   +
Sbjct: 129 PIAVSCD--YSFIAETATMTIHPIRL--TGLVIGVPQTFEYMDKMQDRVINFVTKHSNIS 184

Query: 177 YEEVEKTL-DRDHIMS--------ASEACDWGVVDKV 204
            ++ +  + D+ + ++          +A ++G++D+V
Sbjct: 185 EQKFKDLMFDKGN-LTRDIGTNVVGRDAVEYGLIDEV 220


>gi|291536145|emb|CBL09257.1| Protease subunit of ATP-dependent Clp proteases [Roseburia
           intestinalis M50/1]
          Length = 217

 Score = 64.1 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 67/156 (42%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  +L  LE     + + L +N+ GG V +G+AI + +  I+ P  +  +G + S+G 
Sbjct: 49  EHVLPKLAELEDNPDTEGLLLLLNTVGGDVESGLAIAEMIASIRKPTVSLVLGGSHSIGV 108

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L         F +P+  +++H      SG     +       +++ R+      +   +
Sbjct: 109 PLAV--STDYSFIVPSGTMVIHPVR--MSGTVIGAKPTYDYFKQMQDRIVHFISTHSKAS 164

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
            + +E+ +        D   I+   EA + G++++V
Sbjct: 165 EKRLEELMMNTGILTKDLGTILVGKEAVEEGLINEV 200


>gi|154686096|ref|YP_001421257.1| TepA [Bacillus amyloliquefaciens FZB42]
 gi|154351947|gb|ABS74026.1| TepA [Bacillus amyloliquefaciens FZB42]
          Length = 245

 Score = 64.1 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 89/219 (40%), Gaps = 28/219 (12%)

Query: 4   EGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMA------- 56
           +   K D++D  +  +         GE S    S+      + + GQIE H+        
Sbjct: 11  QQPEKSDAKDSIMSKI------QQLGETSLPQMSQDTNIHCLTIIGQIEGHVQLPPQNKT 64

Query: 57  ---TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAAS 113
                +  Q++ +E     + + + +N+ GG V AG+AI + +  +  P  +  +G   S
Sbjct: 65  TKYEHVIPQIVAIEQNPKIEGLLIILNTVGGDVEAGLAIAEMLASLSKPTVSIVLGGGHS 124

Query: 114 MGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC 173
           +G  +  + +    F    A + +H      +G    + +  + + K++ R+      + 
Sbjct: 125 IGVPIAVSCDH--SFIAETATMTIHPVRL--TGLVIGVPQTFEYLDKMQERVVNFVTHHS 180

Query: 174 GKTYEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
             + E+ ++ +       RD    +   +A D+G++D V
Sbjct: 181 NISEEKFKELMFSKGNLTRDIGTNVVGKDAADYGLIDAV 219


>gi|257414294|ref|ZP_04745868.2| Clp protease [Roseburia intestinalis L1-82]
 gi|257200551|gb|EEU98835.1| Clp protease [Roseburia intestinalis L1-82]
 gi|291538992|emb|CBL12103.1| Protease subunit of ATP-dependent Clp proteases [Roseburia
           intestinalis XB6B4]
          Length = 252

 Score = 64.1 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 67/156 (42%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  +L  LE     + + L +N+ GG V +G+AI + +  I+ P  +  +G + S+G 
Sbjct: 84  EHVLPKLAELEDNPDTEGLLLLLNTVGGDVESGLAIAEMIASIRKPTVSLVLGGSHSIGV 143

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L         F +P+  +++H      SG     +       +++ R+      +   +
Sbjct: 144 PLAV--STDYSFIVPSGTMVIHPVR--MSGTVIGAKPTYDYFKQMQDRIVHFISTHSKAS 199

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
            + +E+ +        D   I+   EA + G++++V
Sbjct: 200 EKRLEELMMNTGILTKDLGTILVGKEAVEEGLINEV 235


>gi|167630380|ref|YP_001680879.1| peptidase s14, clpp [Heliobacterium modesticaldum Ice1]
 gi|167593120|gb|ABZ84868.1| peptidase s14, clpp [Heliobacterium modesticaldum Ice1]
          Length = 255

 Score = 64.1 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 69/156 (44%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  QL+ LE     + + L +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 79  EHILPQLVALEQSKDIEGVLLILNTVGGDVEAGLAIAEMVASLSKPSVSIVLGGGHSIGV 138

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +  + +  M  +     I   + +G   G  +  E     + K++ R+     +N   T
Sbjct: 139 PIAVSADYSMIASTATMTIHPIRLTGLVIGVPATFE----YLEKMQDRVVAFVTRNSRIT 194

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            E+ ++ +       RD   ++   EA ++G++D V
Sbjct: 195 PEKFKELMFKTGELTRDIGTVVVGKEAVEYGLIDAV 230


>gi|329929297|ref|ZP_08283050.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Paenibacillus sp. HGF5]
 gi|328936666|gb|EGG33109.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Paenibacillus sp. HGF5]
          Length = 258

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 70/156 (44%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  QL+  E     + + + +N+ GG V AG+AI + +  +  P  T  +G   S+G 
Sbjct: 80  EHMIPQLVAAEQNPRIEGLLIILNTVGGDVEAGLAIAEMIASLSKPTVTVVIGGGHSIGV 139

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +  A +        +A + +H      SG    + +  + + K++ R+      + G T
Sbjct: 140 PIAVAADH--SIIAESATMTIHPIR--MSGLVIGVPQTFEYMEKMQERVVRFVTSHSGIT 195

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            E+ +  +      +RD    +S ++A  +G++++V
Sbjct: 196 EEQFKDLMFKTGELNRDIGTAVSGTDAVKYGLMNEV 231


>gi|261407921|ref|YP_003244162.1| peptidase S14 ClpP [Paenibacillus sp. Y412MC10]
 gi|261284384|gb|ACX66355.1| peptidase S14 ClpP [Paenibacillus sp. Y412MC10]
          Length = 258

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 70/156 (44%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  QL+  E     + + + +N+ GG V AG+AI + +  +  P  T  +G   S+G 
Sbjct: 80  EHMIPQLVAAEQNPRIEGLLIILNTVGGDVEAGLAIAEMIASLSKPTVTVVIGGGHSIGV 139

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +  A +        +A + +H      SG    + +  + + K++ R+      + G T
Sbjct: 140 PIAVAADH--SIIAESATMTIHPIR--MSGLVIGVPQTFEYMEKMQERVVRFVTSHSGIT 195

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            E+ +  +      +RD    +S ++A  +G++++V
Sbjct: 196 EEQFKDLMFKTGELNRDIGTAVSGADAVKYGLMNEV 231


>gi|261367425|ref|ZP_05980308.1| Clp protease [Subdoligranulum variabile DSM 15176]
 gi|282570193|gb|EFB75728.1| Clp protease [Subdoligranulum variabile DSM 15176]
          Length = 239

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 67/155 (43%), Gaps = 12/155 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  QL+ +E +   + + + +N+ GG V AG+A+ + +  +  P +T  +G   S+G 
Sbjct: 70  EHVIPQLVDIEEDPEIEGLLVILNTVGGDVEAGLALAELIAGVSKPSATLVLGGGHSIGI 129

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L  +  +   F +P A + +H      SG    + +  +   +++ R+      + G T
Sbjct: 130 PLAVSARR--SFIVPTATMTVHPVRH--SGMVLGVPQTLRYFEQMQERIVGFVAGHSGIT 185

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDK 203
                  +        D   ++   +A + G++D+
Sbjct: 186 ARRFTTLMHNTGELVMDMGTVLDGRQAVEEGLIDE 220


>gi|310641612|ref|YP_003946370.1| peptidase s14 clpp [Paenibacillus polymyxa SC2]
 gi|309246562|gb|ADO56129.1| Peptidase S14 ClpP [Paenibacillus polymyxa SC2]
          Length = 282

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 67/156 (42%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  QL+  E     + + + +N+ GG V AG+AI + +  +  P  T  +G   S+G 
Sbjct: 74  EHIIPQLVAAEQNPRIEGLMILLNTVGGDVEAGLAIAEMIASMSKPTVTIVIGGGHSIGV 133

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +  +      +   +A + +H      SG    + +  + + K++ R+    V +   T
Sbjct: 134 PIAVSST--YSYIAESATMTIHPIR--MSGLVIGVPQTFEYMEKMQERVVRFVVSHSRIT 189

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            E  ++ +      +RD    +   +A  +G++D V
Sbjct: 190 EERFKELMFKTGELNRDIGTAVGGIDAVKYGLMDAV 225


>gi|317132346|ref|YP_004091660.1| peptidase S14 ClpP [Ethanoligenens harbinense YUAN-3]
 gi|315470325|gb|ADU26929.1| peptidase S14 ClpP [Ethanoligenens harbinense YUAN-3]
          Length = 319

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 65/155 (41%), Gaps = 12/155 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  Q++ +E +   + + + +N+ GG V AG+AI + +  +K P  +  +G   S+G 
Sbjct: 90  EHVIPQIVAVEEDPRIEGLLIVLNTVGGDVEAGLAIAELISGMKKPTVSLVLGGGHSIGV 149

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L     +   F  P A + +H      +G    + +      K++ R+ +   +N    
Sbjct: 150 PLAICASE--SFIAPTATMTIHPVR--MNGIVVGVPQTLSYFDKMQDRIGKFVAQNSHIA 205

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDK 203
            E  ++ +        D   ++   EA   G++D 
Sbjct: 206 PERFKELMMHTGELVLDVGTVLEGEEAVREGLIDH 240


>gi|284992263|ref|YP_003410817.1| peptidase S14 ClpP [Geodermatophilus obscurus DSM 43160]
 gi|284065508|gb|ADB76446.1| peptidase S14 ClpP [Geodermatophilus obscurus DSM 43160]
          Length = 128

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/52 (50%), Positives = 39/52 (75%), Gaps = 1/52 (1%)

Query: 35 IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVV 86
          ++  LL+ERIV +  Q++D +A  ICAQ+L L A++P +++ LYINSPGG V
Sbjct: 27 VFHCLLRERIVSLGSQVDDDIANQICAQML-LSADDPHRDVHLYINSPGGSV 77


>gi|213616068|ref|ZP_03371894.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella
          enterica subsp. enterica serovar Typhi str. E98-2068]
          Length = 80

 Score = 63.3 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/46 (60%), Positives = 38/46 (82%), Gaps = 2/46 (4%)

Query: 1  MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVF 46
          MS+ G  ++D+    + LVPMV+EQT+RGERS+DIYSRLLKER++F
Sbjct: 37 MSYSG--ERDNLAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIF 80


>gi|108708098|gb|ABF95893.1| ATP-dependent Clp protease proteolytic subunit, putative, expressed
           [Oryza sativa Japonica Group]
          Length = 230

 Score = 63.3 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 9/75 (12%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS---------PGGVVTAGMAIY 93
           RIV++   +   +  L+ AQL++LE  N ++ + +YINS         P G+ + G AIY
Sbjct: 139 RIVYIGMPLVPAVTELVVAQLMYLEWMNSKEPVYIYINSTGTARDDGEPVGMESEGFAIY 198

Query: 94  DTMQFIKPPISTFCM 108
           D M  +K  +     
Sbjct: 199 DAMMRMKTEVHILHQ 213


>gi|302389784|ref|YP_003825605.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Thermosediminibacter oceani DSM 16646]
 gi|302200412|gb|ADL07982.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Thermosediminibacter oceani DSM 16646]
          Length = 236

 Score = 63.3 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 71/156 (45%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  QL+ +E     + + + +N+ GG V AG+A+ + +  +  P  +  +G   S+G 
Sbjct: 63  EHIIPQLVAIEQNPKIEGLLVILNTIGGDVEAGLALAEIIASMTKPTVSLVLGGGHSIGV 122

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +  A +    F    A + +H      +G    + +  + + K++ R+ +  V++    
Sbjct: 123 PIAVASD--YSFIAETATMTIHPIRL--TGLVIGVPQTFEYLDKMQDRVIKFVVEHSKIE 178

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            E + + +       RD   ++  ++A  +G++++V
Sbjct: 179 EETLRRLMFNTGQLARDIGTVLVGADAVRYGLINEV 214


>gi|308173642|ref|YP_003920347.1| protein export-enhancing factor [Bacillus amyloliquefaciens DSM 7]
 gi|307606506|emb|CBI42877.1| protein export-enhancing factor [Bacillus amyloliquefaciens DSM 7]
 gi|328553426|gb|AEB23918.1| protein export-enhancing factor [Bacillus amyloliquefaciens TA208]
          Length = 245

 Score = 63.3 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 89/219 (40%), Gaps = 28/219 (12%)

Query: 4   EGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMA------- 56
           +   K D++D  +  +         GE S    S+      + + GQIE H+        
Sbjct: 11  QQPEKSDAKDSLMSKI------QQLGETSLPQMSQDTNIHCLTIIGQIEGHVQLPPQNKT 64

Query: 57  ---TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAAS 113
                +  Q++ +E     + + + +N+ GG V AG+AI + +  +  P  +  +G   S
Sbjct: 65  TKYEHVIPQIVAIEQNPKIEGLLIILNTVGGDVEAGLAIAEMLASLSKPTVSIVLGGGHS 124

Query: 114 MGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC 173
           +G  +  + +    F    A + +H      +G    + +  + + K++ R+      + 
Sbjct: 125 IGVPIAVSCDH--SFIAETATMTIHPVRL--TGLVIGVPQTFEYLDKMQERVVNFVTNHS 180

Query: 174 GKTYEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
             + E+ ++ +       RD    +   +A D+G++D V
Sbjct: 181 NISEEKFKELMFSKGNLTRDIGTNVVGKDAADYGLIDAV 219


>gi|297617218|ref|YP_003702377.1| peptidase S14 ClpP [Syntrophothermus lipocalidus DSM 12680]
 gi|297145055|gb|ADI01812.1| peptidase S14 ClpP [Syntrophothermus lipocalidus DSM 12680]
          Length = 236

 Score = 63.0 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 66/156 (42%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  QL+ +E     + + + +N+ GG V AG+A+ + +  +  P  +  +G   S+G 
Sbjct: 64  EHVIPQLVAVEENPDIRGLLVILNTVGGDVEAGLALAEMIASMSKPSVSIVLGGGHSIGV 123

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L         F    A + +H      +G    + +  + + K++ R+     ++   +
Sbjct: 124 TLAV--STSYSFIAHTATMTIHPIRL--TGLVIGVPQTYEYLDKMQDRVVRFVTEHSKVS 179

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
             +  + +       RD   ++   +A D G++D+V
Sbjct: 180 ESQFRELMFRTGELARDIGTVLVGKDAVDIGLIDEV 215


>gi|220931715|ref|YP_002508623.1| peptidase S14 ClpP [Halothermothrix orenii H 168]
 gi|219993025|gb|ACL69628.1| peptidase S14 ClpP [Halothermothrix orenii H 168]
          Length = 264

 Score = 63.0 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 65/156 (41%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  QL+ +E     K + + +N+ GG + AG+AI + +  +  P  +  +G   S+G 
Sbjct: 90  EHIIPQLVAVEENPKIKGLLVILNTVGGDIEAGLAISEMINSMTKPTVSVVLGGGHSIGV 149

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +         + +  A + +H      +G    + +  + + K++ R+     ++    
Sbjct: 150 PIAV--STDYSYIVATASMTIHPIRL--TGMVIGVPQTYEYLDKMQDRVISFVTQHSRIL 205

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
            +   + +        D   ++   EA + G++D+V
Sbjct: 206 PDHFRQLMFQTGELVRDVGTVLVGEEAVNHGIIDEV 241


>gi|56419814|ref|YP_147132.1| hypothetical protein GK1279 [Geobacillus kaustophilus HTA426]
 gi|56379656|dbj|BAD75564.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 246

 Score = 63.0 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 68/156 (43%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  Q++ +E     + + + +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 69  EHVIPQIVAIEQNPKIEGLLVILNTVGGDVEAGLAIAEMLASLSKPTVSVVLGGGHSIGV 128

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +  +      F    A + +H      +G    + +  + + K++ R+     K+   +
Sbjct: 129 PIAVSC--NYSFITETATMTIHPIRL--TGLVIGVPQTFEYLDKMQERVVRFVTKHSKIS 184

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            E+ ++ +       RD    +   +A  +G++D+V
Sbjct: 185 EEKFKELMFSKGNLTRDIGTNVVGPDAVRYGLIDEV 220


>gi|297530546|ref|YP_003671821.1| peptidase S14 ClpP [Geobacillus sp. C56-T3]
 gi|297253798|gb|ADI27244.1| peptidase S14 ClpP [Geobacillus sp. C56-T3]
          Length = 246

 Score = 63.0 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 68/156 (43%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  Q++ +E     + + + +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 69  EHVIPQIVAIEQNPKIEGLLVILNTVGGDVEAGLAIAEMLASLSKPTVSVVLGGGHSIGV 128

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +  +      F    A + +H      +G    + +  + + K++ R+     K+   +
Sbjct: 129 PIAVSC--NYSFITETATMTIHPIRL--TGLVIGVPQTFEYLDKMQERVVRFVTKHSKIS 184

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            E+ ++ +       RD    +   +A  +G++D+V
Sbjct: 185 EEKFKELMFSKGNLTRDIGTNVVGPDAVRYGLIDEV 220


>gi|15614960|ref|NP_243263.1| hypothetical protein BH2397 [Bacillus halodurans C-125]
 gi|14548276|sp|Q9KA93|TEPA_BACHD RecName: Full=Translocation-enhancing protein TepA
 gi|10175017|dbj|BAB06116.1| BH2397 [Bacillus halodurans C-125]
          Length = 256

 Score = 63.0 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 68/156 (43%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  QL+  E     + + + +N+ GG V AG+AI + +  +  P  T  +G   S+G 
Sbjct: 77  EHIIPQLVAAEQNKKIEGLLIILNTVGGDVEAGLAIAEMVATMSKPTVTLVLGGGHSIGV 136

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +  A      F    A + +H      +G    + +  + + K++ R+     K+   +
Sbjct: 137 PIAVAA--NYSFIAETATMTIHPVRL--TGLVIGVPQTFEYLDKMQERVVSFVTKHSHIS 192

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            E+ ++ +       RD    +  ++A  +G++D+V
Sbjct: 193 EEKFKELMFSKGNLTRDIGTNVIGTDAVTYGLIDEV 228


>gi|328911782|gb|AEB63378.1| protein export-enhancing factor [Bacillus amyloliquefaciens LL3]
          Length = 249

 Score = 63.0 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 81/194 (41%), Gaps = 22/194 (11%)

Query: 29  GERSYDIYSRLLKERIVFVTGQIEDHMA----------TLICAQLLFLEAENPQKEISLY 78
           GE S    S+      + + GQIE H+             +  Q++ +E     + + + 
Sbjct: 34  GETSLPQMSQDTNIHCLTIIGQIEGHVQLPPQNKTTKYEHVIPQIVAIEQNPKIEGLLII 93

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           +N+ GG V AG+AI + +  +  P  +  +G   S+G  +  + +    F    A + +H
Sbjct: 94  LNTVGGDVEAGLAIAEMLASLSKPTVSIVLGGGHSIGVPIAVSCDH--SFIAETATMTIH 151

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL------DRD--HIM 190
                 +G    + +  + + K++ R+      +   + E+ ++ +       RD    +
Sbjct: 152 PVRL--TGLVIGVPQTFEYLDKMQERVVNFVTNHSNISEEKFKELMFSKGNLTRDIGTNV 209

Query: 191 SASEACDWGVVDKV 204
              +A D+G++D V
Sbjct: 210 VGKDAADYGLIDAV 223


>gi|291522433|emb|CBK80726.1| Protease subunit of ATP-dependent Clp proteases [Coprococcus catus
           GD/7]
          Length = 233

 Score = 63.0 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 65/156 (41%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  QL   E       I + +N+ GG V AG+AI + +  I  P  +  +G + S+G 
Sbjct: 60  EHVLPQLAMAEDSCDIDGILVLLNTMGGDVEAGLAIAEMIASISKPTVSLVLGGSHSIGV 119

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L  + +    F +P+  +++H      +G    + +  +   +I+ R+    V N    
Sbjct: 120 PLAVSAD--YSFIVPSGTMIIHPVR--MNGMVIGVIQTYEYFERIQERILNFIVTNSRIA 175

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
              ++K +        D   ++   E  D G++D +
Sbjct: 176 KSHLKKLMLDTSKLAKDVGTVLDGQETVDCGLIDAI 211


>gi|261419480|ref|YP_003253162.1| peptidase S14 ClpP [Geobacillus sp. Y412MC61]
 gi|319766296|ref|YP_004131797.1| peptidase S14 ClpP [Geobacillus sp. Y412MC52]
 gi|261375937|gb|ACX78680.1| peptidase S14 ClpP [Geobacillus sp. Y412MC61]
 gi|317111162|gb|ADU93654.1| peptidase S14 ClpP [Geobacillus sp. Y412MC52]
          Length = 246

 Score = 63.0 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 68/156 (43%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  Q++ +E     + + + +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 69  EHVIPQIVAIEQNPKIEGLLVILNTVGGDVEAGLAIAEMLASLSKPTVSVVLGGGHSIGV 128

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +  +      F    A + +H      +G    + +  + + K++ R+     K+   +
Sbjct: 129 PIAVSC--NYSFITETATMTIHPIRL--TGLVIGVPQTFEYLDKMQERVVRFVTKHSKIS 184

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            E+ ++ +       RD    +   +A  +G++D+V
Sbjct: 185 EEKFKELMFSKGNLTRDIGTNVVGPDAVRYGLIDEV 220


>gi|225416613|ref|ZP_03761802.1| hypothetical protein CLOSTASPAR_05837 [Clostridium asparagiforme
           DSM 15981]
 gi|225041859|gb|EEG52105.1| hypothetical protein CLOSTASPAR_05837 [Clostridium asparagiforme
           DSM 15981]
          Length = 293

 Score = 63.0 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 83/195 (42%), Gaps = 22/195 (11%)

Query: 28  RGERSYDIYSRLLKERIVFVTGQIEDHMA----------TLICAQLLFLEAENPQKEISL 77
            G+ + +   R  K  ++ + G++E H              +  QL  +E ++    + +
Sbjct: 85  YGQMTLEENRRHRKIHLITIIGEVEGHENLSGNSKATKYDHVLPQLAQIEDDDTVDGLLV 144

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
            +N+ GG V AG+AI + +  +  P  +  +G + S+G  L         F +P+  +++
Sbjct: 145 LLNTSGGDVDAGLAIAEMIASLSMPTVSLVLGGSHSIGVPLAV--STNYSFIVPSGTMMI 202

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD------RD--HI 189
           H      SG      +  +    I+ R+      +    Y+++++ +       RD   +
Sbjct: 203 HPVR--MSGMVIGSSQTYEYFAMIEDRILNFVESHARIAYDQLKELMHNTEMLTRDLGTV 260

Query: 190 MSASEACDWGVVDKV 204
           +   EA + G++D+V
Sbjct: 261 LVGKEAVEAGLIDEV 275


>gi|296330894|ref|ZP_06873369.1| protein export-enhancing factor [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674412|ref|YP_003866084.1| protein export-enhancing factor [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296151899|gb|EFG92773.1| protein export-enhancing factor [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305412656|gb|ADM37775.1| protein export-enhancing factor [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 245

 Score = 63.0 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 68/156 (43%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  Q++ +E     + + + +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 68  EHVIPQIVAIEQNPKIEGLLIILNTVGGDVEAGLAIAEMLASLSKPTVSIVLGGGHSIGV 127

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +  + +    +    A + +H      +G    + +  + + K++ R+ +    +    
Sbjct: 128 PIAVSCD--YSYIAETATMTIHPVRL--TGLVIGVPQTFEYLDKMQERVVKFVTSHSNVN 183

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            ++ ++ +       RD    +   +A ++G++D V
Sbjct: 184 EDKFKELMFSKGNLTRDIGTNVVGKDAVEYGLIDHV 219


>gi|167033633|ref|YP_001668864.1| peptidase S14 ClpP [Pseudomonas putida GB-1]
 gi|166860121|gb|ABY98528.1| peptidase S14 ClpP [Pseudomonas putida GB-1]
          Length = 183

 Score = 62.6 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 67/167 (40%), Gaps = 8/167 (4%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
            I+  TG I       + +       +   + + L I + GG  + G  +Y+ ++ +   
Sbjct: 4   HIIHFTGPINSSTCGNLISTCSR-ALQQGAEVLQLNIATMGGECSYGFTLYNFLRALPVE 62

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG--QASDIERHAQDIVK 160
           + T  +G   SMG++L  AGE+  R A   ++ L H       G    S +  +A  +  
Sbjct: 63  VHTHNLGTVESMGNILFLAGER--RTACSFSKFLFHPFHWTLHGSVDHSRMAEYAMSLDY 120

Query: 161 IKRRLNEIYVKNCGKTYEEVEK---TLDRDHIMSASEACDWGVVDKV 204
             R   +I  +      E ++     +    I+   EA + G++D +
Sbjct: 121 DLRLYAQIVTERTEGAAEVLDVPRYLMAYPRILGPREAMENGLIDAI 167


>gi|240143579|ref|ZP_04742180.1| ClpP protease family protein [Roseburia intestinalis L1-82]
 gi|257204444|gb|EEV02729.1| ClpP protease family protein [Roseburia intestinalis L1-82]
          Length = 419

 Score = 62.6 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 55/144 (38%), Gaps = 4/144 (2%)

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           L  L     + +I++ INS GG +   + I + ++ +         G AAS  +++    
Sbjct: 69  LEDLAQVKDKAKITVRINSVGGDLYTALGICNRLKELNGDTVAVIDGIAASAATIIAMGC 128

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASD--IERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           +   R     A  ++H+      G  +   +    + +    +   E Y    G   E++
Sbjct: 129 KT--REIAEGALFMVHEALLTLVGNYNHKALLEVNKRLEAANKAAAETYDAATGLGTEKI 186

Query: 181 EKTLDRDHIMSASEACDWGVVDKV 204
            + + ++   +  EA + G    +
Sbjct: 187 RQIMAKETWYTGREAVENGFCTSI 210


>gi|268608938|ref|ZP_06142665.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ruminococcus
           flavefaciens FD-1]
          Length = 228

 Score = 62.6 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 68/159 (42%), Gaps = 22/159 (13%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I   L+ +E +   + + + +N+ GG V AG+AI + +  +K P  +  +G   S+G 
Sbjct: 55  EHIIPALVAVEQDRSVEGLLIILNTVGGDVEAGLAIAELISGMKTPTVSLVVGGGHSIGV 114

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L  + +K   F +P+A + +H      +G    + +      +++ R+    V N G +
Sbjct: 115 PLAVSAKK--SFIVPSASMTIHPVR--MNGTVLGVPQTLSYFQRMQDRIVRFVVGNSGIS 170

Query: 177 YEEVEKTLDRDHIMSASE-------------ACDWGVVD 202
            E+    +     M+  E             A + G++D
Sbjct: 171 EEDFRSLM-----MNTEELVLDVGSVVEGEKAVELGLID 204


>gi|282863188|ref|ZP_06272248.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sp. ACTE]
 gi|282562170|gb|EFB67712.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Streptomyces
           sp. ACTE]
          Length = 54

 Score = 62.6 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 28/49 (57%)

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           ++     +  ++ G+  ++V+  L+RD ++ A  A  +G++D V+ +R 
Sbjct: 1   MRETFTAMPARHTGRPAQDVDADLERDTVLDAQAAQAYGLIDHVIENRT 49


>gi|283779627|ref|YP_003370382.1| hypothetical protein Psta_1848 [Pirellula staleyi DSM 6068]
 gi|283438080|gb|ADB16522.1| hypothetical protein Psta_1848 [Pirellula staleyi DSM 6068]
          Length = 195

 Score = 62.2 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 63/159 (39%), Gaps = 8/159 (5%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
           + V G++ +H    +C +LL   A  P  E++LY NSPGG   A M++   ++      +
Sbjct: 14  IAVMGELTEHEPD-LCEKLL---AVPPGGEVTLYFNSPGGSAYAAMSLASIIKLRNLQAT 69

Query: 105 TFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQA--SDIERHAQDIVKIK 162
               G+ +S    L        R   P++  L H            ++    A+    ++
Sbjct: 70  GVVTGECSSAA--LWPFAACIKRLVTPHSVALFHPMKWESEEHVGIAEAAEWARHFSLLE 127

Query: 163 RRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
           + ++++     G + E +   +     +S  E    G+ 
Sbjct: 128 KEMDQLLADLFGISLEVIAPWMRPGRYVSGRELAAAGLA 166


>gi|225181409|ref|ZP_03734853.1| peptidase S14 ClpP [Dethiobacter alkaliphilus AHT 1]
 gi|225167990|gb|EEG76797.1| peptidase S14 ClpP [Dethiobacter alkaliphilus AHT 1]
          Length = 255

 Score = 62.2 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 68/156 (43%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  QL+ +E     + + + +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 81  EHVIPQLVAIEQNPKIEGLLIILNTVGGDVEAGLAIAEMVDTLSKPTVSLVLGGGHSIGV 140

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +  + +    F    A + +H      SG    + +  + + K++ R+ +   K+   T
Sbjct: 141 PIAVSAD--YSFITETATMTVHPIRL--SGLVIGVPQTYEYLDKMQDRVIKFVTKHSRVT 196

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            ++    +       RD   +M   +A   G++D+V
Sbjct: 197 EDKFRHLMFCTDQLARDIGTVMVGPDAVKDGLIDEV 232


>gi|326202158|ref|ZP_08192028.1| peptidase S49 [Clostridium papyrosolvens DSM 2782]
 gi|325987953|gb|EGD48779.1| peptidase S49 [Clostridium papyrosolvens DSM 2782]
          Length = 251

 Score = 62.2 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 65/156 (41%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  QL+ +E     + + L +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 69  EHIIPQLVAIEESKQIEGLLLVLNTVGGDVEAGLAISEMVSSLSKPTVSLVLGGGHSIGV 128

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +  +      F   +A + +H      +G    + +  +   K++ R+      + G  
Sbjct: 129 PMAVSA--NHSFIASSATMTIHPIR--MNGLVIGVPQTYEYFDKMQERVVNFVCSHSGIK 184

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
            E+  + +        D   ++   EA   G++D+V
Sbjct: 185 REKFRELMLKTGELANDVGTVLFGEEATQSGLIDQV 220


>gi|169842312|ref|ZP_02875417.1| Protease subunit of ATP-dependent Clp protease [candidate division
           TM7 single-cell isolate TM7a]
          Length = 55

 Score = 62.2 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/44 (68%), Positives = 38/44 (86%)

Query: 83  GGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           GGV+TAG+AIYDTM+ IK  +ST C+GQAASMG++LL+AG KG 
Sbjct: 1   GGVITAGLAIYDTMRHIKSDVSTVCVGQAASMGAVLLAAGAKGK 44


>gi|325115976|emb|CBZ51530.1| conserved hypothetical protein [Neospora caninum Liverpool]
          Length = 278

 Score = 61.8 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 52/132 (39%), Gaps = 26/132 (19%)

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS-GGFSGQASDIERHAQDI 158
            P  +T  +G A    +LLL+ G +G R A  NA I L  P      G+ +++   A+ +
Sbjct: 147 PPFCATVAVGLAWGTAALLLACGTRGFRAATRNASIALRFPRVSLGQGKTAELRSRAEAV 206

Query: 159 VKIKRRLNEIYVKNCGK-------------------------TYEEVEKTLDRDHIMSAS 193
           +  +R   E+     G                          T  ++ + + +   ++  
Sbjct: 207 LSGQRAQAELLASLLGNAEKEKKREGGENEAQTESRTSDSNATVSDLLRLMRKGAFLTPE 266

Query: 194 EACDWGVVDKVL 205
           EA D G++D +L
Sbjct: 267 EAQDLGIIDHIL 278


>gi|167769170|ref|ZP_02441223.1| hypothetical protein ANACOL_00493 [Anaerotruncus colihominis DSM
           17241]
 gi|167668810|gb|EDS12940.1| hypothetical protein ANACOL_00493 [Anaerotruncus colihominis DSM
           17241]
          Length = 240

 Score = 61.8 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 69/154 (44%), Gaps = 12/154 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  QLL +E +   + + + +N+ GG V AG+AI + +  ++ P  +  +G   S+G 
Sbjct: 70  EHVIPQLLAVEQDPEIEGLVVILNTVGGDVEAGLAIAELLSGMRKPTVSLVLGGGHSIGV 129

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L  +  +   F +P+A + +H      +G    + +      +++ R+ +    N   +
Sbjct: 130 PLAVSARR--SFIVPSATMTVHPVR--MNGLVLGVPQTLSYFDRMQERIVKFVTDNSRIS 185

Query: 177 YEEVEK-TLDRD-------HIMSASEACDWGVVD 202
            E   +  +++D        ++    A D G++D
Sbjct: 186 PERFRQLMMNKDELVMDVGTVLDGQAAVDEGLID 219


>gi|307102716|gb|EFN50985.1| hypothetical protein CHLNCDRAFT_141635 [Chlorella variabilis]
          Length = 91

 Score = 61.8 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 27/54 (50%)

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             A ++    +   +   +  G+  EEV + + R+   +  +A ++G++DKV+ 
Sbjct: 2   IKANELENSTQTYVDFMSRFTGRDKEEVRRDVGRNRYFTPDQAVEYGIIDKVMQ 55


>gi|143581|gb|AAA22783.1| ORF X [Bacillus subtilis]
          Length = 244

 Score = 61.8 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 67/155 (43%), Gaps = 12/155 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  Q++ +E     + + + +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 67  EHVIPQIVAIEQNPKIEGLLIILNTVGGDVEAGLAIAEMLASLSKPTVSIVLGGGHSIGV 126

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +  + +    +    + + +H      +G    + +  + + K++ R+ +    +   T
Sbjct: 127 PIAVSCD--YSYIAETSTVTIHPVRL--TGLVIGVPQTFEYLDKMQERVVKFVTSHSNIT 182

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDK 203
            E+ ++ +       RD    +   +A  +G++D 
Sbjct: 183 EEKFKELMFSKGNLTRDIGTNVVGKDAVKYGLIDH 217


>gi|52080286|ref|YP_079077.1| translocation-enhancing protein [Bacillus licheniformis ATCC 14580]
 gi|52785663|ref|YP_091492.1| TepA [Bacillus licheniformis ATCC 14580]
 gi|319645933|ref|ZP_08000163.1| TepA protein [Bacillus sp. BT1B_CT2]
 gi|52003497|gb|AAU23439.1| translocation-enhancing protein [Bacillus licheniformis ATCC 14580]
 gi|52348165|gb|AAU40799.1| TepA [Bacillus licheniformis ATCC 14580]
 gi|317391683|gb|EFV72480.1| TepA protein [Bacillus sp. BT1B_CT2]
          Length = 248

 Score = 61.8 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 68/155 (43%), Gaps = 12/155 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  Q++ +E     + + + +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 71  EHVIPQIVAVEQNPKIEGLLIILNTVGGDVEAGLAIAEMLASLSKPTVSIVLGGGHSIGV 130

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +  + +    +    A + +H      +G    + +  + + K++ R+      +   +
Sbjct: 131 PIAVSCDH--SYIAETATMTIHPVRL--TGLVIGVPQTFEYLDKMQERVINFVTSHSNIS 186

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDK 203
            E+ ++ +       RD    +  ++A  +G++D+
Sbjct: 187 EEKFKELMFSKGNLTRDIGTNVVGNDAVKYGLIDE 221


>gi|218290114|ref|ZP_03494276.1| peptidase S14 ClpP [Alicyclobacillus acidocaldarius LAA1]
 gi|218239823|gb|EED07012.1| peptidase S14 ClpP [Alicyclobacillus acidocaldarius LAA1]
          Length = 259

 Score = 61.8 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 85/212 (40%), Gaps = 43/212 (20%)

Query: 20  PMVVEQTNRGERSY----DIYSRLLKERIVFVTGQIEDHMA----------TLICAQLLF 65
           P  VE     E +     DIY        + V GQIE HMA            +  QL+ 
Sbjct: 28  PSSVESLGANEPAAVVTGDIY-------CLTVIGQIEGHMALPPQNKTTKYEHVIPQLVA 80

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           +E  +    + + +N+ GG V AG+AI + +  +  P  +  +G   S+G  +  A +  
Sbjct: 81  VEESDKIDGLLIILNTVGGDVEAGLAIAELVASMSKPKVSVVLGGGHSIGVPIAVAAD-- 138

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
             F   +A + +H       G    +++  + + K++ R+    V++       + + + 
Sbjct: 139 YTFIAESASMTIHPIRLN--GLVIGVQQSFEYLEKMQDRVIRFVVEHS-----RISEDMF 191

Query: 186 RDHIMS-------------ASEACDWGVVDKV 204
           R  +++               +A  +G+ D+V
Sbjct: 192 RHLMLNTGEMAKDIGTTVVGRDAVKYGLCDEV 223


>gi|150390425|ref|YP_001320474.1| peptidase S14, ClpP [Alkaliphilus metalliredigens QYMF]
 gi|149950287|gb|ABR48815.1| peptidase S14, ClpP [Alkaliphilus metalliredigens QYMF]
          Length = 254

 Score = 61.4 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 68/156 (43%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  QL+ +E     + + + +N+ GG V AG+A+ + +  +  P  T  +G   S+G 
Sbjct: 78  EHVIPQLMTVEQNPNVEGMLVILNTAGGDVEAGLALSELINTLSKPTVTLVLGGGHSIGV 137

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L +AG+    F  P+A + +H      +G    + +  Q   K++ R+ +  V N    
Sbjct: 138 PLATAGD--YSFIAPSATMTIHPIR--MTGLVIGVPQTFQYFSKMQDRIIDFVVNNSNVD 193

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
            +   + +        D   I+   +A    ++D+V
Sbjct: 194 KDIFIELMNTTDELANDVGTILIGEDAVKHKLIDEV 229


>gi|308068716|ref|YP_003870321.1| Translocation-enhancing protein tepA [Paenibacillus polymyxa E681]
 gi|305857995|gb|ADM69783.1| Translocation-enhancing protein tepA [Paenibacillus polymyxa E681]
          Length = 282

 Score = 61.4 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 69/156 (44%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  QL+  E     + + + +N+ GG V AG+AI + +  +  P  T  +G   S+G 
Sbjct: 74  EHIIPQLVAAEQNPRIEGLMILLNTVGGDVEAGLAIAEMIASMSKPTVTIVIGGGHSIGV 133

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +  +      +   +A + +H      +G    + +  + + K++ R+    V +   T
Sbjct: 134 PIAVSST--YSYIAESATMTIHPIR--MNGLVIGVPQTFEYMEKMQERVVRFVVSHSRIT 189

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            ++ ++ +      +RD    +  ++A  +G++D V
Sbjct: 190 EKQFKELMFKTGELNRDIGTAVGGADAVKYGLMDAV 225


>gi|255767379|ref|NP_389561.3| protein export-enhancing factor [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|321315446|ref|YP_004207733.1| protein export-enhancing factor [Bacillus subtilis BSn5]
 gi|238054399|sp|Q99171|TEPA_BACSU RecName: Full=Translocation-enhancing protein TepA
 gi|225185006|emb|CAB13552.3| protein export-enhancing factor [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|291484234|dbj|BAI85309.1| translocation-enhancing protein [Bacillus subtilis subsp. natto
           BEST195]
 gi|320021720|gb|ADV96706.1| protein export-enhancing factor [Bacillus subtilis BSn5]
          Length = 245

 Score = 61.4 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 67/155 (43%), Gaps = 12/155 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  Q++ +E     + + + +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 68  EHVIPQIVAIEQNPKIEGLLIILNTVGGDVEAGLAIAEMLASLSKPTVSIVLGGGHSIGV 127

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +  + +    +    A + +H      +G    + +  + + K++ R+ +    +   T
Sbjct: 128 PIAVSCD--YSYIAETATMTIHPVRL--TGLVIGVPQTFEYLDKMQERVVKFVTSHSNIT 183

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDK 203
            E+ ++ +       RD    +   +A  +G++D 
Sbjct: 184 EEKFKELMFSKGNLTRDIGTNVVGKDAVKYGLIDH 218


>gi|221309558|ref|ZP_03591405.1| TepA [Bacillus subtilis subsp. subtilis str. 168]
 gi|221318805|ref|ZP_03600099.1| TepA [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221323077|ref|ZP_03604371.1| TepA [Bacillus subtilis subsp. subtilis str. SMY]
          Length = 245

 Score = 61.4 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 66/155 (42%), Gaps = 12/155 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  Q++ +E     + + + +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 68  EHVIPQIVAIEQNPKIEGLLIILNTVGGDVEAGLAIAEMLASLSKPTVSIVLGGGHSIGV 127

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +  + +    +      + +H      +G    + +  + + K++ R+ +    +   T
Sbjct: 128 PIAVSCD--YSYIAETGTVTIHPVRL--TGLVIGVPQTFEYLDKMQERVVKFVTSHSNIT 183

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDK 203
            E+ ++ +       RD    +   +A  +G++D 
Sbjct: 184 EEKFKELMFSKGNLTRDIGTNVVGKDAVKYGLIDH 218


>gi|291563562|emb|CBL42378.1| Protease subunit of ATP-dependent Clp proteases [butyrate-producing
           bacterium SS3/4]
          Length = 224

 Score = 61.4 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 67/154 (43%), Gaps = 12/154 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  +L  +E++     + + +N+ GG V+ G+A+ + +  +  P  +  +G + S+G 
Sbjct: 56  EHILPELAKVESDEKIGGVLILVNTIGGDVSCGLALAEMIASLSKPTVSLVIGDSHSIGV 115

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L  A +    F +P   +L+H      SG      +  +    I+ R+     ++    
Sbjct: 116 PLAVASD--YSFIVPTGTMLVHPVR--MSGMVIGTAQTYEYFEMIEERIISFVSEHSRID 171

Query: 177 YEEVEKTLDRDHIMS--------ASEACDWGVVD 202
            E++++ +    +++          EA + G++D
Sbjct: 172 REKMKRLMHNTKMLTKDLGTVLVGKEAVECGLID 205


>gi|295091960|emb|CBK78067.1| Protease subunit of ATP-dependent Clp proteases [Clostridium cf.
           saccharolyticum K10]
          Length = 262

 Score = 61.4 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 75/174 (43%), Gaps = 18/174 (10%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  +L  +E ++    + + IN+ GG V+ G+A+ + +  +  P  +  +G + S+G 
Sbjct: 91  EHILPKLAEIEDDDQVDGMLILINTVGGDVSCGLALAEMIASLSRPTVSLVIGDSHSIGV 150

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L  A +    F +P   +++H      +G      +       I+ R+     ++    
Sbjct: 151 PLAVASD--YSFIVPTGTMMIHPVR--MTGMVIGAVQTYDYFEMIQDRILSFVSEHARIA 206

Query: 177 YEEVE------KTLDRD--HIMSASEACDWGVVDKV------LMSRIDIEEKSK 216
           Y++++      K L +D   ++   EA   G++D+V      L    ++ EK K
Sbjct: 207 YDQLKGLMLNTKMLTKDLGTVLVGEEAVKEGLIDEVGGIHEALTKLNELIEKKK 260


>gi|26989985|ref|NP_745410.1| Clp protease, putative [Pseudomonas putida KT2440]
 gi|24984904|gb|AAN68874.1|AE016519_7 clp protease, putative [Pseudomonas putida KT2440]
          Length = 198

 Score = 61.4 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 69/168 (41%), Gaps = 10/168 (5%)

Query: 43  RIVFVTGQIEDHM-ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP 101
            I+  TG I       LI      L+     + + L I + GG  + G  +Y+ ++ +  
Sbjct: 19  HIIHFTGPINSSTCGNLITTCSRALQ--QGAELLQLNIATMGGECSYGFTLYNFLRALPV 76

Query: 102 PISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG--QASDIERHAQDIV 159
            + T  +G   SMG++L  AGE+  R A   ++ L H       G    S +  +A  + 
Sbjct: 77  EVHTHNLGTVESMGNILFLAGER--RTACSFSKFLFHPFHWTLHGSVDHSRMSEYAMSLD 134

Query: 160 KIKRRLNEIYVKNCGKTYEEVEK---TLDRDHIMSASEACDWGVVDKV 204
              R   +I  +      E ++     +    I++  EA + G++ ++
Sbjct: 135 YDLRLYAQIVAERTKGAAEVLDVPRYLMAYPRILAPREALENGMIHEI 182


>gi|221313882|ref|ZP_03595687.1| TepA [Bacillus subtilis subsp. subtilis str. NCIB 3610]
          Length = 245

 Score = 61.4 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 67/155 (43%), Gaps = 12/155 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  Q++ +E     + + + +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 68  EHVIPQIVAIEQNPKIEGLLIILNTVGGDVEAGLAIAEMLASLSKPTVSIVLGGGHSIGV 127

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +  + +    +    A + +H      +G    + +  + + K++ R+ +    +   T
Sbjct: 128 PIAVSCD--YSYIAETATVTIHPVRL--TGLVIGVPQTFEYLDKMQERVVKFVTSHSNIT 183

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDK 203
            E+ ++ +       RD    +   +A  +G++D 
Sbjct: 184 EEKFKELMFSKGNLTRDIGTNVVGKDAVKYGLIDH 218


>gi|311068202|ref|YP_003973125.1| TepA protein [Bacillus atrophaeus 1942]
 gi|310868719|gb|ADP32194.1| TepA [Bacillus atrophaeus 1942]
          Length = 245

 Score = 61.0 bits (147), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 69/156 (44%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  Q++ +E     + + + +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 68  EHVIPQIVAIEQNPKIEGLLIILNTVGGDVEAGLAIAEMLASLSKPTVSIVLGGGHSIGV 127

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +  + +    +    A + +H      +G    + +  + + K++ R+ +    +   T
Sbjct: 128 PIAVSCD--YSYIAETATMTIHPVRL--TGLVIGVPQTFEYLDKMQDRVVKFVTSHSNVT 183

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            E+ ++ +       RD    +   +A D+G++D V
Sbjct: 184 EEKFKELMFSKGNLTRDIGTNVVGKDAADYGLIDDV 219


>gi|170721816|ref|YP_001749504.1| peptidase S14 ClpP [Pseudomonas putida W619]
 gi|169759819|gb|ACA73135.1| peptidase S14 ClpP [Pseudomonas putida W619]
          Length = 183

 Score = 61.0 bits (147), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 66/167 (39%), Gaps = 8/167 (4%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
            I+  TG I       + +    +  +     + L I + GG  + G  +Y+ ++ +  P
Sbjct: 4   HIIHFTGPINSSTCGNLISTCSKVMQQGAD-LLQLNIATMGGECSYGFTLYNFLRALPVP 62

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG--QASDIERHAQDIVK 160
           + T  +G   SMG++L  AGE   R A   ++ L H       G    + +  +A  +  
Sbjct: 63  VHTHNLGTVESMGNILFLAGEH--RTACAMSKFLFHPFHWTLHGAVDHARMAEYAMSLDY 120

Query: 161 IKRRLNEIYVKNCGKTYEEVEK---TLDRDHIMSASEACDWGVVDKV 204
             R   +I  +    + E ++     +    I+   EA   G++  V
Sbjct: 121 DLRLYAQIVAERTAGSAEVLDVQRYLMADPRILDPQEALGSGLIHAV 167


>gi|291087633|ref|ZP_06346979.2| translocation-enhancing protein TepA [Clostridium sp. M62/1]
 gi|291074513|gb|EFE11877.1| translocation-enhancing protein TepA [Clostridium sp. M62/1]
          Length = 264

 Score = 61.0 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 75/174 (43%), Gaps = 18/174 (10%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  +L  +E ++    + + IN+ GG V+ G+A+ + +  +  P  +  +G + S+G 
Sbjct: 93  EHILPKLAEIEDDDQVDGMLILINTVGGDVSCGLALAEMIASLSRPTVSLVIGDSHSIGV 152

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L  A +    F +P   +++H      +G      +       I+ R+     ++    
Sbjct: 153 PLAVASD--YSFIVPTGTMMIHPVR--MTGMVIGAVQTYDYFEMIQDRILSFVSEHARIA 208

Query: 177 YEEVE------KTLDRD--HIMSASEACDWGVVDKV------LMSRIDIEEKSK 216
           Y++++      K L +D   ++   EA   G++D+V      L    ++ EK K
Sbjct: 209 YDQLKGLMLNTKMLTKDLGTVLVGEEAVKEGLIDEVGGIHEALTKLNELIEKKK 262


>gi|213621307|ref|ZP_03374090.1| hypothetical protein SentesTyp_28867 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 37

 Score = 60.6 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/36 (61%), Positives = 30/36 (83%)

Query: 122 GEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
           G KG RF LPN+R+++HQP GG+ GQA+DIE HA++
Sbjct: 2   GAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHARE 37


>gi|104782139|ref|YP_608637.1| Clp protease (protease subunit) [Pseudomonas entomophila L48]
 gi|95111126|emb|CAK15846.1| putative clp protease (protease subunit) [Pseudomonas entomophila
           L48]
          Length = 183

 Score = 60.6 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 63/168 (37%), Gaps = 10/168 (5%)

Query: 43  RIVFVTGQIEDHM-ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP 101
            I+  TG I       LI      L+       + L I + GG  + G  +Y+ +  +  
Sbjct: 4   HIIHYTGPINSSTCGNLINTCSRALQ--QGADLLQLNIATMGGECSYGFTLYNFLLSLPV 61

Query: 102 PISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG--QASDIERHAQDIV 159
           P+ T  +G   SMG++L  AG    R A   ++ L H       G    + +  +A  + 
Sbjct: 62  PVHTHNLGTVESMGNILFLAGSH--RTACACSKFLFHPFHWTLHGSVDHARMAEYAMSLD 119

Query: 160 KIKRRLNEIYVKNCGKTYEEVEK---TLDRDHIMSASEACDWGVVDKV 204
              R   +I  +      E ++     +    I+   EA   G++  +
Sbjct: 120 YDLRLYAQIVAERTAGAVEALDVPRYLMAHPRILDPQEALACGLIHAI 167


>gi|258511441|ref|YP_003184875.1| peptidase S14 ClpP [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478167|gb|ACV58486.1| peptidase S14 ClpP [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 259

 Score = 60.6 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 68/161 (42%), Gaps = 22/161 (13%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  QL+ +E  +    + + +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 72  EHVIPQLVAVEESDKIDGLLIILNTVGGDVEAGLAIAELVASMSKPKVSVVLGGGHSIGV 131

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +  A +    F   +A + +H       G    +++  + + K++ R+    V++    
Sbjct: 132 PIAVAAD--YTFIAESASMTIHPIRLN--GLVIGVQQSFEYLEKMQDRVIRFVVEHS--- 184

Query: 177 YEEVEKTLDRDHIMS-------------ASEACDWGVVDKV 204
              + + + R  +++               +A  +G+ D+V
Sbjct: 185 --RISEDMFRHLMLNTGEMAKDIGTTVVGRDAVKYGLCDEV 223


>gi|30316458|gb|AAP31400.1| hypothetical protein [Pseudomonas putida]
          Length = 183

 Score = 60.3 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 55/133 (41%), Gaps = 7/133 (5%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L I + GG  + G  +Y+ ++ +   + T  +G   SMG++L  AGE+  R A   ++ L
Sbjct: 37  LNIATMGGECSYGFTLYNFLRALPVAVHTHNLGTVESMGNILFLAGER--RTACSFSKFL 94

Query: 137 LHQPSGGFSG--QASDIERHAQDIVKIKRRLNEIYVKNC---GKTYEEVEKTLDRDHIMS 191
            H       G    + +  +A  +        +I  +      +  +     +    I+S
Sbjct: 95  FHPFHWTLHGSVDHARMAEYAMSLDYDLELYAQIVAERTEGAAQVLDVPRYLMAHPRILS 154

Query: 192 ASEACDWGVVDKV 204
             EA + G++  V
Sbjct: 155 PREALENGMIHSV 167


>gi|160880890|ref|YP_001559858.1| peptidase S14 ClpP [Clostridium phytofermentans ISDg]
 gi|160429556|gb|ABX43119.1| peptidase S14 ClpP [Clostridium phytofermentans ISDg]
          Length = 316

 Score = 60.3 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 82/205 (40%), Gaps = 22/205 (10%)

Query: 27  NRGERSYDIYSRLLKERIVFVTGQIEDHMA----------TLICAQLLFLEAENPQKEIS 76
           + G+ + +   +  K  ++ + G+IE H              +  QL  +E +     + 
Sbjct: 104 DYGQATLEDNGKNHKIHLLSIIGEIEGHECLSQNAKTTKYEHVLPQLATIEDDTETDGLL 163

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           + IN+ GG V+ G+A+ + +  +  P  +  +G + S+G  L         F +P   ++
Sbjct: 164 ILINTVGGDVSCGLALAEMIASLSKPTVSLVIGDSHSIGVPLAV--ATNYSFIVPTGTMI 221

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL--------DRDH 188
           +H      SG      +       I+ R+      +     E++E+ +        D   
Sbjct: 222 VHPVR--MSGMVIGAPQTYDYFKLIQDRIVGFVSSHSKIKKEKLEQLMLNTGMLSKDLGT 279

Query: 189 IMSASEACDWGVVDKVLMSRIDIEE 213
           I+   EA   G++++V   +  IE+
Sbjct: 280 ILVGDEAVAEGIINEVGGIKQAIEK 304


>gi|148547710|ref|YP_001267812.1| peptidase S14, ClpP [Pseudomonas putida F1]
 gi|148511768|gb|ABQ78628.1| peptidase S14, ClpP [Pseudomonas putida F1]
          Length = 183

 Score = 59.9 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 68/168 (40%), Gaps = 10/168 (5%)

Query: 43  RIVFVTGQIEDHM-ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP 101
            I+  TG I       LI      L+     + + L I + GG  + G  +Y+ ++ +  
Sbjct: 4   HIIHFTGPINSSTCGNLITTCSRALQ--QGAELLQLNIATMGGECSYGFTLYNFLRGLPV 61

Query: 102 PISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG--QASDIERHAQDIV 159
            + T  +G   SMG++L  AGE+  R A   ++ L H       G    S +  +A  + 
Sbjct: 62  EVHTHNLGTVESMGNILFLAGER--RTACSFSKFLFHPFHWTLHGSVDHSRMSEYAMSLD 119

Query: 160 KIKRRLNEIYVKNCGKTYEEVEK---TLDRDHIMSASEACDWGVVDKV 204
              R   +I  +      E ++     +    I++  EA + G++  +
Sbjct: 120 YDLRLYAQIVAERTKGAAEVLDVPRYLMAYPRILAPREALENGMIHAI 167


>gi|291545120|emb|CBL18229.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ruminococcus
           sp. 18P13]
          Length = 243

 Score = 59.9 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 67/154 (43%), Gaps = 12/154 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I   L+ +E +   + + + +N+ GG V AG+AI + +  +K P  +  +G   S+G 
Sbjct: 66  EHIIPALVAIEQDRSIEGLLIILNTVGGDVEAGLAIAELLAGMKTPTVSLVVGGGHSIGV 125

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L  + ++   F +P+A + +H      +G    + +      K++ R+      N G +
Sbjct: 126 PLAVSAKR--SFIVPSATMTIHPVR--MNGMIVGVPQTLSYFKKMQDRIVNFVTANSGIS 181

Query: 177 YEEVEKT--------LDRDHIMSASEACDWGVVD 202
            ++            +D   ++    A + G++D
Sbjct: 182 EQQFRALMMETEELVMDVGTVVDGERAVELGLID 215


>gi|313498767|gb|ADR60133.1| Clp protease, putative [Pseudomonas putida BIRD-1]
          Length = 183

 Score = 59.5 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 68/168 (40%), Gaps = 10/168 (5%)

Query: 43  RIVFVTGQIEDHM-ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP 101
            I+  TG I       LI      L+     + + L I + GG  + G  +Y+ ++ +  
Sbjct: 4   HIIHFTGPINSSTCGNLITTCSRALQ--QGAELLQLNIATMGGECSYGFTLYNFLRALPV 61

Query: 102 PISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG--QASDIERHAQDIV 159
            + T  +G   SMG++L  AGE+  R A   ++ L H       G    S +  +A  + 
Sbjct: 62  EVHTHNLGTVESMGNILFLAGER--RTACSFSKFLFHPFHWTLHGSVDHSRMSEYAMSLD 119

Query: 160 KIKRRLNEIYVKNCGKTYEEVEK---TLDRDHIMSASEACDWGVVDKV 204
              R   +I  +      E ++     +    I++  EA + G++  +
Sbjct: 120 YDLRLYAQIVAERTKGAAEVLDVPRYLMAYPRILAPREALENGMIHAI 167


>gi|298682279|gb|ADI95342.1| putative Clp protease [Pseudomonas putida]
          Length = 198

 Score = 59.5 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 67/168 (39%), Gaps = 10/168 (5%)

Query: 43  RIVFVTGQIEDHM-ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP 101
            I+  TG I       LI      L+     + + L I + GG  + G  +Y+ ++ +  
Sbjct: 19  HIIHFTGPINSSTCGNLITTCSRALQ--QGAELLQLNIATMGGECSYGFTLYNFLRGLPV 76

Query: 102 PISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG--QASDIERHAQDIV 159
            + T  +G   SMG++L  AG +  R A   ++ L H       G    S +  +A  + 
Sbjct: 77  EVHTHNLGTVESMGNILFLAGAR--RTACSFSKFLFHPFHWTLHGSVDHSRMSEYAMSLD 134

Query: 160 KIKRRLNEIYVKNCGKTYEEVEK---TLDRDHIMSASEACDWGVVDKV 204
              R   +I  +      E ++     +    I++  EA + G++  +
Sbjct: 135 YDLRLYAQIVAERTKGAAEVLDVPRYLMAYPRILAPREALENGMIHAI 182


>gi|224826601|ref|ZP_03699702.1| peptidase S14 ClpP [Lutiella nitroferrum 2002]
 gi|224601202|gb|EEG07384.1| peptidase S14 ClpP [Lutiella nitroferrum 2002]
          Length = 217

 Score = 59.1 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 45/173 (26%), Positives = 82/173 (47%), Gaps = 17/173 (9%)

Query: 28  RGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF-LEAENPQKEISLYINSPGGVV 86
           +G   Y+I S+L +    ++ G+I+   A+     L + L + +    I L++N+ GG  
Sbjct: 23  QGLSRYEIRSQLSEI-SFYLCGEIQ---ASHFYTNLFYTLRSASETDIIYLHLNTTGGDF 78

Query: 87  TAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG 146
             GM I + MQ     + T    +A SMG+L+  AG++       N +++ H  SG F+G
Sbjct: 79  DTGMQIINNMQSSCAHVITVLEARAYSMGALIFLAGDELE--VQDNCQLMFHIYSGTFAG 136

Query: 147 ----QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD-RDHIMSASE 194
               Q + I+  +    K+ +R+ + +      +  EV+K L   D  M + E
Sbjct: 137 RGTEQQAQIQAVSSWFEKVMQRICQPF-----LSTAEVDKVLKGADVWMDSDE 184


>gi|117624540|ref|YP_853453.1| hypothetical protein APECO1_4214 [Escherichia coli APEC O1]
 gi|218559264|ref|YP_002392177.1| Clp protease [Escherichia coli S88]
 gi|300935777|ref|ZP_07150741.1| Clp protease [Escherichia coli MS 21-1]
 gi|301029851|ref|ZP_07192883.1| Clp protease [Escherichia coli MS 196-1]
 gi|115513664|gb|ABJ01739.1| hypothetical protein APECO1_4214 [Escherichia coli APEC O1]
 gi|218366033|emb|CAR03778.1| putative Clp protease [Escherichia coli S88]
 gi|299877308|gb|EFI85519.1| Clp protease [Escherichia coli MS 196-1]
 gi|300459048|gb|EFK22541.1| Clp protease [Escherichia coli MS 21-1]
 gi|323948766|gb|EGB44665.1| hypothetical protein ERKG_04777 [Escherichia coli H252]
          Length = 178

 Score = 59.1 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 69/139 (49%), Gaps = 6/139 (4%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           E++++I+S GG   AG   Y+ ++ +   + T  +    S+ +++  AG +  RFA P +
Sbjct: 33  ELNIHISSQGGETAAGFTAYNFLKSLPVTVRTHNISNVESIANIVFLAGSE--RFANPLS 90

Query: 134 RILLHQPSGGFSGQASD---IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           R LLH     F+  A+D   +  + + +     R  E +  + G T+      +    I+
Sbjct: 91  RFLLHPLLWCFASPAADHARLREYGKCLDNDLDRFVETFNIDIG-THIRWASLIADSTIL 149

Query: 191 SASEACDWGVVDKVLMSRI 209
            A++A + G+++ +  +R+
Sbjct: 150 DANKALEHGIINSIKTARL 168


>gi|23099067|ref|NP_692533.1| translocation enhancing protein [Oceanobacillus iheyensis HTE831]
 gi|22777295|dbj|BAC13568.1| translocation enhancing protein [Oceanobacillus iheyensis HTE831]
          Length = 244

 Score = 59.1 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 71/157 (45%), Gaps = 14/157 (8%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  QL+ +E     + + + +N+ GG V AG+A+ + +  +  P  +  +G   S+G 
Sbjct: 68  EHLLPQLIAIEQNPKIEGLVILLNTVGGDVEAGLALAEMISSLSKPTVSIVLGGGHSIGV 127

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +         F +P A + +H      +G    + +  + + K++ R+ +  V +    
Sbjct: 128 PIAV--ATDHSFIVPTATMTIHPIRL--TGLVIGVPQTFEYLDKMQERVIDFVVHHSNIK 183

Query: 177 YEEVEKTL------DRD---HIMSASEACDWGVVDKV 204
            E+ ++ +       RD   +++ A  A ++G+++ V
Sbjct: 184 EEKFKELMFAQGNLTRDIGTNVVGAD-AVEFGLINDV 219


>gi|304404310|ref|ZP_07385972.1| peptidase S14 ClpP [Paenibacillus curdlanolyticus YK9]
 gi|304347288|gb|EFM13120.1| peptidase S14 ClpP [Paenibacillus curdlanolyticus YK9]
          Length = 249

 Score = 59.1 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 65/157 (41%), Gaps = 14/157 (8%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  QL+  E     + I + +N+ GG V AG+AI + +  +  P  T  +G   S+G 
Sbjct: 71  EHLIPQLVAAEQNPKIEGILIVLNTVGGDVEAGLAIAEMISSLTKPTVTLVLGGGHSIGV 130

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +  +  +   F   +A + +H       G    + +  + + K++ R+      +   +
Sbjct: 131 PIAVSANR--SFIAESATMTIHPIRLN--GLVIGVPQTFEYLDKMQERVVRFVTSHSNIS 186

Query: 177 YEEVEKTL------DRD---HIMSASEACDWGVVDKV 204
            +  ++ +       RD    ++ A  A   G++D V
Sbjct: 187 EQLFKELMFKTGELTRDIGTTVIGAD-AVKHGLIDAV 222


>gi|255280960|ref|ZP_05345515.1| Clp protease [Bryantella formatexigens DSM 14469]
 gi|255268408|gb|EET61613.1| Clp protease [Bryantella formatexigens DSM 14469]
          Length = 221

 Score = 59.1 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 68/156 (43%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  QL  +E     + + + +N+ GG V AG+AI + +  +  P  +  +G + S+G 
Sbjct: 56  EHILPQLAAIEDSREIEGVLILLNTVGGDVEAGLAIAEMIASLSKPTVSLVLGGSHSIGV 115

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +  + +    F +    +++H      SG      +      +++ R+      +C  T
Sbjct: 116 PIAVSAD--YSFIVETGTMVIHPVR--MSGTVIGAPQTYDYFRQMQDRILGFISGHCSAT 171

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
            + +E+ +        D   I+  S+A + G++++V
Sbjct: 172 RDRLEELMLDTGMLTKDLGTILVGSQAVEEGIINQV 207


>gi|220929125|ref|YP_002506034.1| peptidase S14 ClpP [Clostridium cellulolyticum H10]
 gi|219999453|gb|ACL76054.1| peptidase S14 ClpP [Clostridium cellulolyticum H10]
          Length = 254

 Score = 59.1 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 65/156 (41%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  QL+ +E     + + L +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 69  EHIIPQLVAIEESKQIEGLLLVLNTVGGDVEAGLAISEMVSSLSKPTVSLVLGGGHSIGV 128

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +  +      F   +A + +H      +G    + +  +   K++ R+      + G  
Sbjct: 129 PMAVSA--NYSFIASSATMTIHPIR--MNGLVIGVPQTYEYFDKMQERVVNFVCSHSGIK 184

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
            E+  + +        D   ++   EA   G++++V
Sbjct: 185 KEKFRELMLKTGELANDVGTVLFGEEATQTGLINQV 220


>gi|325680800|ref|ZP_08160338.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Ruminococcus albus 8]
 gi|324107580|gb|EGC01858.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
           [Ruminococcus albus 8]
          Length = 229

 Score = 58.7 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 63/154 (40%), Gaps = 12/154 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I   L+ +E ++  + + + +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 56  EHIIPALVAVEQDSDIEGLLIVLNTVGGDVEAGLAIAELIAGMSTPTVSLVVGGGHSIGV 115

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L    ++   F +P A + +H      SG    + +      K++ R+      N    
Sbjct: 116 PLAVCADR--SFIVPTATMTIHPVR--MSGTVLGVPQTMSYFYKMQERIVSFVCGNSSIK 171

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVD 202
            E   + +        D   ++   EA   G++D
Sbjct: 172 PERFRELMMSTGELMTDIGTVLEGDEAVKEGLID 205


>gi|239626582|ref|ZP_04669613.1| peptidase S14 ClpP [Clostridiales bacterium 1_7_47_FAA]
 gi|239516728|gb|EEQ56594.1| peptidase S14 ClpP [Clostridiales bacterium 1_7_47FAA]
          Length = 252

 Score = 58.7 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 68/156 (43%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  +L  +E ++    + + +N+ GG V AG+AI + +  +  P  +  +G + S+G 
Sbjct: 80  DHILPKLAEIEDDDSVDGLLVLLNTSGGDVDAGLAIAEMIASLSLPTVSLVLGGSHSIGV 139

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L         F +P+  +++H      +G      +  +    I+ R+      +    
Sbjct: 140 PLAV--STNYSFIVPSGTMMIHPVR--MTGMVIGTAQTYEYFEMIQDRILTFVASHADIA 195

Query: 177 YEEVE------KTLDRD--HIMSASEACDWGVVDKV 204
           Y+++       K L RD   ++   +A + G++++V
Sbjct: 196 YDQLRDLMHNTKMLTRDLGTVLVGEQAVEAGLINQV 231


>gi|330896142|gb|EGH28363.1| peptidase S14 ClpP [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 183

 Score = 58.7 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 66/158 (41%), Gaps = 10/158 (6%)

Query: 55  MATLICAQLLF---LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQA 111
           + +  C QL+    L  E     +++ I + GG  + G  +Y+ +  +  P+ T  +G  
Sbjct: 12  ITSATCGQLIDRSSLAIERGASCLAVNIATMGGECSYGFTMYNFLLSLPIPVHTHNLGTV 71

Query: 112 ASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG--QASDIERHAQDIVKIKRRLNEIY 169
            SMG+++  AGE+  R A  +++ L H      SG    S +  +A  +    +    I 
Sbjct: 72  ESMGNIVFLAGER--RTACVHSKFLFHPFHWHVSGSVDHSRMSEYAMSLDYDLQLYARIV 129

Query: 170 VKNCGKTYEE--VEK-TLDRDHIMSASEACDWGVVDKV 204
            +      E   +EK       I+   +A   GV+  V
Sbjct: 130 AERTVDAREVLDIEKYLTAAPRIIDPQQALVTGVIHAV 167


>gi|228956403|ref|ZP_04118222.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228803274|gb|EEM50074.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
          Length = 121

 Score = 58.7 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 2/65 (3%)

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC--GKTYEEVEKTLDRDHIMSAS 193
           ++H+P    +G A D+ + A+D+  I+  +  +Y +N   G   EE+++ +D +  +S  
Sbjct: 1   MIHKPWTYAAGNAIDLRKAAEDLDNIETGIMNVYKENLKEGIEIEEIQQLVDAETWLSGE 60

Query: 194 EACDW 198
           EA  +
Sbjct: 61  EAEKY 65


>gi|56963977|ref|YP_175708.1| translocation-enhancing protein TepA [Bacillus clausii KSM-K16]
 gi|56910220|dbj|BAD64747.1| translocation-enhancing protein TepA [Bacillus clausii KSM-K16]
          Length = 243

 Score = 58.7 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 70/156 (44%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  QL+ +E     + + + +N+ GG V AG+A+ + +  I  P  T  +G   S+G 
Sbjct: 67  EHMIPQLVAVEQNPKIEGLLIILNTVGGDVEAGLALSEMIASISKPTVTLVLGGGHSIGV 126

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            + +A      F    A + +H      +G    + +  + + K++ R+      +   +
Sbjct: 127 PIATAAS--YSFIAETATMTIHPVRL--TGLVIGVPQTFEYLDKMQDRVIRFVTSHSQIS 182

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            E+ ++ +       RD    +  ++A ++G++++V
Sbjct: 183 EEKFKELMFSKGNLTRDIGTNVIGTDAVEYGLINEV 218


>gi|329769509|ref|ZP_08260919.1| hypothetical protein HMPREF0433_00683 [Gemella sanguinis M325]
 gi|328838724|gb|EGF88322.1| hypothetical protein HMPREF0433_00683 [Gemella sanguinis M325]
          Length = 322

 Score = 58.3 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 66/193 (34%), Gaps = 34/193 (17%)

Query: 45  VFVTGQIEDHMATL-----ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           + V G+I   M        I  Q+    A+   K I L +N+PGG V     IY+ ++  
Sbjct: 67  ISVEGEIGSEMTNTYSRGSIINQIKVASADPNVKAILLSVNTPGGGVYETAEIYNALKNS 126

Query: 100 KPPISTFCMGQAASMGSLLLSAGEK--------------GMRFALPNARILLHQPSGGF- 144
              +      QA S G  +  A +K               M +      +  H       
Sbjct: 127 GKDVYVAMKKQATSGGYYISMAAKKIYANSETTTGSIGVIMSYVSAQKFLNEHGIKQETI 186

Query: 145 --------SGQASDI-----ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
                    G A D+     + + +   +   R  +   +    + +EV+K  D     S
Sbjct: 187 RSGDQKAIGGLAEDLPESTRKIYQEQNKEAYDRFVKAIAEGRNMSEDEVKKLADGRTY-S 245

Query: 192 ASEACDWGVVDKV 204
             +A +  +VDK+
Sbjct: 246 GKQAVENKLVDKI 258


>gi|317129147|ref|YP_004095429.1| peptidase S14 ClpP [Bacillus cellulosilyticus DSM 2522]
 gi|315474095|gb|ADU30698.1| peptidase S14 ClpP [Bacillus cellulosilyticus DSM 2522]
          Length = 248

 Score = 58.3 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 73/174 (41%), Gaps = 18/174 (10%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  QL+  E     + + + +N+ GG V AG+A+ + +  +  P  T  +G   S+G 
Sbjct: 70  EHIIPQLVAAEQNPKIEGLLIILNTVGGDVEAGLALSEMISSLSKPTVTLVLGGGHSIGV 129

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +  A      F    A + +H      +G    + +  + + K++ R+     ++   +
Sbjct: 130 PIAVAA--NYSFIAETATMTIHPVRL--TGLVIGVPQTFEYLDKMQDRVINFVTRHSSIS 185

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV------LMSRIDIEEKSK 216
            E  ++ +       RD    +   +A  +G++++V      +    ++ E+SK
Sbjct: 186 EENFKELMLSKGNLTRDIGTNVIGKDAVSYGLINEVGGIGQAIKKLNELIEQSK 239


>gi|218689445|ref|YP_002397657.1| putative Clp protease [Escherichia coli ED1a]
 gi|218690202|ref|YP_002398414.1| putative Clp protease [Escherichia coli ED1a]
 gi|218427009|emb|CAR07883.2| putative Clp protease [Escherichia coli ED1a]
 gi|218427766|emb|CAR08677.2| putative Clp protease [Escherichia coli ED1a]
          Length = 178

 Score = 58.3 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 69/139 (49%), Gaps = 6/139 (4%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           E++++I+S GG   AG   Y+ ++ +   + T  +    S+ +++  AG +  RFA P +
Sbjct: 33  ELNIHISSQGGETAAGFTAYNFLKSLPVTVRTHNISNVESIANIVFLAGSE--RFANPLS 90

Query: 134 RILLHQPSGGFSGQASD---IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           R LLH     F+  A+D   +  + + +     R  E +  + G T+      +    I+
Sbjct: 91  RFLLHPLLWVFATPAADHARLREYGKCLDNDLDRFVETFNIDIG-THIRWASLIADSTIL 149

Query: 191 SASEACDWGVVDKVLMSRI 209
            A++A + G+++ +  +R+
Sbjct: 150 DANKALEHGIINSIKTARL 168


>gi|218132895|ref|ZP_03461699.1| hypothetical protein BACPEC_00756 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991768|gb|EEC57772.1| hypothetical protein BACPEC_00756 [Bacteroides pectinophilus ATCC
           43243]
          Length = 212

 Score = 58.3 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 61/149 (40%), Gaps = 12/149 (8%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  QL  +E  +    +   +N+ GG V+AG+A+ + +  +  P  +  +G + S+G 
Sbjct: 59  EHILPQLAAVEDNSDIDGVLFLLNTVGGDVSAGLALAEMISSLSKPTVSLVLGDSHSIGV 118

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L  A +    F  P   +++H      SG      +       I+ R+     ++   +
Sbjct: 119 PLAVACD--YSFITPTGTMIIHPVR--MSGTVIGAPQTYDYFKLIQDRIAGFIERHTECS 174

Query: 177 YEEVEKTL--------DRDHIMSASEACD 197
            E++E+ +        D   I+   EA D
Sbjct: 175 REQIEQMMMNTGILTKDLGTILVGEEAVD 203


>gi|226942392|ref|YP_002797465.1| clp protease [Azotobacter vinelandii DJ]
 gi|226717319|gb|ACO76490.1| clp protease [Azotobacter vinelandii DJ]
          Length = 142

 Score = 58.3 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 56/128 (43%), Gaps = 7/128 (5%)

Query: 82  PGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
            GG  + G ++Y+ +  +  P++T  +G   SMG+++  AG++  R A  +++ L H   
Sbjct: 1   MGGECSYGFSLYNFLVSLPIPVNTHNLGTVESMGNIIFLAGQR--RTACQHSKFLFHPFH 58

Query: 142 GGFSG--QASDIERHAQDIVKIKRRLNEIYVKNC--GKTYEEVEKTLDRD-HIMSASEAC 196
               G    + +  +A  +   +     I  +         +V + L  D  I++  EA 
Sbjct: 59  WTIHGSVDHARMSEYAMSLDFDRVLYARIVAERTLGAMDPLDVSQYLTADSKILTPDEAL 118

Query: 197 DWGVVDKV 204
             G++  V
Sbjct: 119 AAGLIHAV 126


>gi|194015072|ref|ZP_03053689.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP
           [Bacillus pumilus ATCC 7061]
 gi|194014098|gb|EDW23663.1| putative ATP-dependent Clp protease, proteolytic subunit ClpP
           [Bacillus pumilus ATCC 7061]
          Length = 242

 Score = 58.3 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 69/156 (44%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  Q++ +E     + + + +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 65  EHVIPQIVAVEQNPKIEGLLIILNTVGGDVEAGLAIAEMLASLSKPTVSIVLGGGHSIGV 124

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +  + +    +    A + +H      +G    + +  + + K++ R+      +   T
Sbjct: 125 PIAVSCD--YSYIAETATMTIHPVRL--TGLVIGVPQTFEYLDKMQERVINFVTSHSNIT 180

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            E+ ++ +       RD    +   EA ++G++++V
Sbjct: 181 EEKFKELMFSKGNLTRDIGTNVVGHEAAEYGLMNEV 216


>gi|225018528|ref|ZP_03707720.1| hypothetical protein CLOSTMETH_02475 [Clostridium methylpentosum
           DSM 5476]
 gi|224948729|gb|EEG29938.1| hypothetical protein CLOSTMETH_02475 [Clostridium methylpentosum
           DSM 5476]
          Length = 262

 Score = 58.3 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 65/154 (42%), Gaps = 12/154 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +   L+ +E     K + + +N+ GG V AG+AI + +  I  P  +  +G   S+G 
Sbjct: 75  EHVIPALVAIEQSPDIKGLVVILNTVGGDVEAGLAIAELIAGINKPTVSLVLGGGHSIGV 134

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L  + +K   F +P+A + +H      SG    + +      +++ R+      N    
Sbjct: 135 PLAVSAKK--SFIVPSASMTVHPVR--MSGLVLGVPQTLSYFDRMQERIVRFVTDNSNIE 190

Query: 177 YEEVEKT--------LDRDHIMSASEACDWGVVD 202
            +  ++         +D   ++   +A + G++D
Sbjct: 191 ADRFKQLMMTTGELVMDVGTVLDGQKAVEEGLID 224


>gi|226311643|ref|YP_002771537.1| hypothetical protein BBR47_20560 [Brevibacillus brevis NBRC 100599]
 gi|226094591|dbj|BAH43033.1| conserved hypothetical membrane protein [Brevibacillus brevis NBRC
           100599]
          Length = 447

 Score = 58.0 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 56/150 (37%), Gaps = 20/150 (13%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           L+IN+PGG V A   I   ++     +  +   QA S G+ +     +      P + + 
Sbjct: 75  LHINTPGGEVNAADQIGQLIRQAPMHVIAYIDNQAFSAGTYIALNANEI--IMTPGSSMG 132

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH-I------ 189
              P     G A+DI+  +    K+K        +   +  +     ++ D         
Sbjct: 133 AATPIDLA-GNAADIKFISGWSNKMKAA-----AELNNRNPDVARAMVEIDTEFPGLKPK 186

Query: 190 -----MSASEACDWGVVDKVLMSRIDIEEK 214
                + A +A   G  D V+ ++ ++ +K
Sbjct: 187 GTVLSLDAQQAKRLGYADDVVSNKEELLKK 216


>gi|157692363|ref|YP_001486825.1| endopeptidase ClpP [Bacillus pumilus SAFR-032]
 gi|157681121|gb|ABV62265.1| S14 family endopeptidase ClpP [Bacillus pumilus SAFR-032]
          Length = 249

 Score = 58.0 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 69/156 (44%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  Q++ +E     + + + +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 72  EHVIPQIVAVEQNPKIEGLLIILNTVGGDVEAGLAIAEMLASLSKPTVSIVLGGGHSIGV 131

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +  + +    +    A + +H      +G    + +  + + K++ R+      +   T
Sbjct: 132 PIAVSCD--YSYIAETATMTIHPVRL--TGLVIGVPQTFEYLDKMQERVINFVTSHSNIT 187

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            E+ ++ +       RD    +   EA ++G++++V
Sbjct: 188 EEKFKELMFSKGNLTRDIGTNVVGHEAAEYGLMNEV 223


>gi|257440282|ref|ZP_05616037.1| Clp protease [Faecalibacterium prausnitzii A2-165]
 gi|257197316|gb|EEU95600.1| Clp protease [Faecalibacterium prausnitzii A2-165]
          Length = 228

 Score = 58.0 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 66/155 (42%), Gaps = 12/155 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  QL+ ++ +   + + + IN+ GG V AG+A+ + +  I  P +T  +G   S+G 
Sbjct: 59  EHVIPQLVAVQEDPAVEGLLVLINTVGGDVEAGLALAELIASISKPSATVVLGGGHSIGI 118

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L  +  +   F +P A + +H      SG    + +  +   +++ R+      + G T
Sbjct: 119 PLAVSARR--SFIVPTATMTVHPVRH--SGMILGVPQTMRWFEQMQERITGFVAGHSGIT 174

Query: 177 YEEVEKTLDRD--------HIMSASEACDWGVVDK 203
                + + R          ++   +A    ++D+
Sbjct: 175 AARYSELMLRTGELVMDVGTMLDGKKAVKEKLIDQ 209


>gi|302874673|ref|YP_003843306.1| peptidase S49 [Clostridium cellulovorans 743B]
 gi|307690713|ref|ZP_07633159.1| peptidase S49 [Clostridium cellulovorans 743B]
 gi|302577530|gb|ADL51542.1| peptidase S49 [Clostridium cellulovorans 743B]
          Length = 274

 Score = 58.0 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 78/182 (42%), Gaps = 22/182 (12%)

Query: 41  KERIVFVTGQIEDHMA----------TLICAQLLFLEAENPQKEISLYINSPGGVVTAGM 90
           +  I+ + GQIE HM             I  Q++ +E  +  +   + +N+ GG V AG+
Sbjct: 31  RIAILPIIGQIEGHMVAPPQHKTTKYEHIIPQVVGIETNDKIEGALIILNTIGGDVEAGL 90

Query: 91  AIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASD 150
           AI + +  I  P  +  +G   S+G  L +A +    +   +A +++H      +G    
Sbjct: 91  AIAEMITSISKPTVSLVIGGGHSIGVPLATAAK--YSYITTSATMIVHPIR--MNGTVIG 146

Query: 151 IERHAQDIVKIKRRLNEIYVKNCG-KTYEEVEKTLDRD-------HIMSASEACDWGVVD 202
           + +      K++ R+ E  V+    +    +   +  D        I+   +A + G++D
Sbjct: 147 VPQTFDYFNKMQERIVEFVVRTSKVQRDSFISMMMKTDELLNDMGTILIGKQAVEKGLID 206

Query: 203 KV 204
           +V
Sbjct: 207 EV 208


>gi|237704834|ref|ZP_04535315.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|226901200|gb|EEH87459.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|315288226|gb|EFU47625.1| Clp protease [Escherichia coli MS 110-3]
          Length = 178

 Score = 58.0 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 70/139 (50%), Gaps = 6/139 (4%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           E++++I+S GG   AG   Y+ ++ +   + T  +    S+ +++  AG +  RFA P +
Sbjct: 33  ELNIHISSQGGETAAGFTAYNFLKSLPVTVRTHNISNVESIANIVFLAGSE--RFANPLS 90

Query: 134 RILLHQPSGGFSGQASD---IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           R LLH    GF+  A+D   +  + + +     R  E +  + G T+      +    I+
Sbjct: 91  RFLLHPLLWGFASPAADHARLREYGKCLDNDLDRFVETFNIDIG-THIRWASLIADSTIL 149

Query: 191 SASEACDWGVVDKVLMSRI 209
            A++A + G+++ +  +R+
Sbjct: 150 DANKALEHGIINSIKTARL 168


>gi|194397675|ref|YP_002037393.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae G54]
 gi|194357342|gb|ACF55790.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus
           pneumoniae G54]
          Length = 43

 Score = 58.0 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 24/39 (61%)

Query: 169 YVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
             +N  ++ E+V    +RD+ MSA E  ++G +D+++ +
Sbjct: 1   MAENSXQSMEKVHADAERDNWMSAQETLEYGFIDEIMAN 39


>gi|323976874|gb|EGB71962.1| hypothetical protein ERFG_02663 [Escherichia coli TW10509]
          Length = 186

 Score = 58.0 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 13/140 (9%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           EI LYI+S GG   +G   Y+ ++ +   ++T  +    S+ +++  AGE  +R A P +
Sbjct: 36  EIKLYISSKGGDTVSGFTAYNFLKSLGVKVTTHNLSNVESIANVIYMAGE--VRTANPLS 93

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYV----KNCGKTYEEVEKTLDRD-- 187
           R LLH    GF+  ++D  R  +    +   LN        +   K   E+     +D  
Sbjct: 94  RFLLHPLHWGFAAPSADHLRLREWASCLDDDLNRFIQIMDIETKKKNPSEIADW--KDLI 151

Query: 188 ---HIMSASEACDWGVVDKV 204
               I+    A + G+V +V
Sbjct: 152 TSATILHPGRASELGIVHQV 171


>gi|228947517|ref|ZP_04109807.1| Translocation-enhancing protein tepA [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229123310|ref|ZP_04252514.1| Translocation-enhancing protein tepA [Bacillus cereus 95/8201]
 gi|228660086|gb|EEL15722.1| Translocation-enhancing protein tepA [Bacillus cereus 95/8201]
 gi|228812037|gb|EEM58368.1| Translocation-enhancing protein tepA [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 249

 Score = 58.0 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 65/156 (41%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  Q++ +E     + + L +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 70  EHIIPQIVAIEQNPKIEGLLLVLNTVGGDVEAGLAISEMVASLSKPTVSLVLGGGHSIGV 129

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +         F    A + +H      +G    + +  + + K++ R+     K+   T
Sbjct: 130 PIAV--STDYSFIAETATMTIHPIRL--TGLVIGVPQTFEYLDKMQERVIRFVTKHSKVT 185

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            +  ++ +       RD    +   +A  +G++D V
Sbjct: 186 EDRFKELMFAKGNLTRDIGTNVIGGDAVKYGLIDDV 221


>gi|229117283|ref|ZP_04246661.1| Translocation-enhancing protein tepA [Bacillus cereus Rock1-3]
 gi|228666183|gb|EEL21647.1| Translocation-enhancing protein tepA [Bacillus cereus Rock1-3]
          Length = 249

 Score = 58.0 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 65/156 (41%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  Q++ +E     + + L +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 70  EHIIPQIVAIEQNPKIEGLLLILNTVGGDVEAGLAIAEMVASLSKPTVSLVLGGGHSIGV 129

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +         F    A + +H      +G    + +  + + K++ R+     K+   T
Sbjct: 130 PIAV--STDYSFIAETATMTIHPIRL--TGLVIGVPQTFEYLDKMQERVIRFVTKHSKVT 185

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            +  ++ +       RD    +   +A  +G++D V
Sbjct: 186 EDRFKELMFAKGNLTRDIGTNVIGGDAVKYGLIDDV 221


>gi|229032762|ref|ZP_04188721.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
          AH1271]
 gi|228728557|gb|EEL79574.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
          AH1271]
          Length = 39

 Score = 57.6 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/37 (62%), Positives = 31/37 (83%)

Query: 16 LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIE 52
          + L+P V+EQTNRGER+YDIYSRLLK+RI+ +  Q+ 
Sbjct: 1  MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGRQLM 37


>gi|42782881|ref|NP_980128.1| hypothetical protein BCE_3831 [Bacillus cereus ATCC 10987]
 gi|42738808|gb|AAS42736.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
 gi|324327690|gb|ADY22950.1| hypothetical protein YBT020_18610 [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 249

 Score = 57.6 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 65/156 (41%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  Q++ +E     + + L +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 70  EHIIPQIVAIEQNPKIEGLLLVLNTVGGDVEAGLAISEMVASLSKPTVSLVLGGGHSIGV 129

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +         F    A + +H      +G    + +  + + K++ R+     K+   T
Sbjct: 130 PIAV--STDYSFIAETATMTIHPIRL--TGLVIGVPQTFEYLDKMQERVIRFVTKHSKVT 185

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            +  ++ +       RD    +   +A  +G++D V
Sbjct: 186 EDRFKELMFAKGNLTRDIGTNVIGGDAVKYGLIDDV 221


>gi|229098266|ref|ZP_04229213.1| Translocation-enhancing protein tepA [Bacillus cereus Rock3-29]
 gi|228685164|gb|EEL39095.1| Translocation-enhancing protein tepA [Bacillus cereus Rock3-29]
          Length = 249

 Score = 57.6 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 65/156 (41%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  Q++ +E     + + L +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 70  EHIIPQIVAIEQNPKIEGLLLILNTVGGDVEAGLAISEMVASLSKPTVSLVLGGGHSIGV 129

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +         F    A + +H      +G    + +  + + K++ R+     K+   T
Sbjct: 130 PIAV--STDYSFIAETATMTIHPIRL--TGLVIGVPQTFEYLDKMQERVIRFVTKHSKVT 185

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            +  ++ +       RD    +   +A  +G++D V
Sbjct: 186 EDRFKELMFAKGNLTRDIGTNVIGGDAVKYGLIDDV 221


>gi|229104359|ref|ZP_04235028.1| Translocation-enhancing protein tepA [Bacillus cereus Rock3-28]
 gi|228679057|gb|EEL33265.1| Translocation-enhancing protein tepA [Bacillus cereus Rock3-28]
          Length = 249

 Score = 57.6 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 65/156 (41%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  Q++ +E     + + L +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 70  EHIIPQIVAIEQNPKIEGLLLILNTVGGDVEAGLAISEMVASLSKPTVSLVLGGGHSIGV 129

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +         F    A + +H      +G    + +  + + K++ R+     K+   T
Sbjct: 130 PIAV--STDYSFIAETATMTIHPIRL--TGLVIGVPQTFEYLDKMQERVIRFVTKHSKVT 185

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            +  ++ +       RD    +   +A  +G++D V
Sbjct: 186 EDRFKELMFAKGNLTRDIGTNVIGGDAVKYGLIDDV 221


>gi|163941483|ref|YP_001646367.1| peptidase S14 ClpP [Bacillus weihenstephanensis KBAB4]
 gi|229012979|ref|ZP_04170144.1| Translocation-enhancing protein tepA [Bacillus mycoides DSM 2048]
 gi|229061399|ref|ZP_04198744.1| Translocation-enhancing protein tepA [Bacillus cereus AH603]
 gi|229134603|ref|ZP_04263413.1| Translocation-enhancing protein tepA [Bacillus cereus BDRD-ST196]
 gi|229168535|ref|ZP_04296258.1| Translocation-enhancing protein tepA [Bacillus cereus AH621]
 gi|163863680|gb|ABY44739.1| peptidase S14 ClpP [Bacillus weihenstephanensis KBAB4]
 gi|228614941|gb|EEK72043.1| Translocation-enhancing protein tepA [Bacillus cereus AH621]
 gi|228648864|gb|EEL04889.1| Translocation-enhancing protein tepA [Bacillus cereus BDRD-ST196]
 gi|228717822|gb|EEL69470.1| Translocation-enhancing protein tepA [Bacillus cereus AH603]
 gi|228748233|gb|EEL98093.1| Translocation-enhancing protein tepA [Bacillus mycoides DSM 2048]
          Length = 249

 Score = 57.6 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 65/156 (41%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  Q++ +E     + + L +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 70  EHIIPQIVAIEQNPKIEGLLLILNTVGGDVEAGLAISEMVASLSKPTVSLVLGGGHSIGV 129

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +         F    A + +H      +G    + +  + + K++ R+     K+   T
Sbjct: 130 PIAV--STDYSFIAETATMTIHPIRL--TGLVIGVPQTFEYLDKMQERVIRFVTKHSKVT 185

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            +  ++ +       RD    +   +A  +G++D V
Sbjct: 186 EDRFKELMFAKGNLTRDIGTNVIGGDAVKYGLIDGV 221


>gi|49479417|ref|YP_037857.1| translocation-enhancing protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|225865776|ref|YP_002751154.1| clp protease [Bacillus cereus 03BB102]
 gi|228935095|ref|ZP_04097923.1| Translocation-enhancing protein tepA [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|49330973|gb|AAT61619.1| translocation-enhancing protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|225788341|gb|ACO28558.1| clp protease [Bacillus cereus 03BB102]
 gi|228824565|gb|EEM70369.1| Translocation-enhancing protein tepA [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 249

 Score = 57.6 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 65/156 (41%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  Q++ +E     + + L +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 70  EHIIPQIVAIEQNPKIEGLLLVLNTVGGDVEAGLAISEMVASLSKPTVSLVLGGGHSIGV 129

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +         F    A + +H      +G    + +  + + K++ R+     K+   T
Sbjct: 130 PIAV--STDYSFIAETATMTIHPIRL--TGLVIGVPQTFEYLDKMQERVIRFVTKHSKVT 185

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            +  ++ +       RD    +   +A  +G++D V
Sbjct: 186 EDRFKELMFAKGNLTRDIGTNVIGGDAVKYGLIDDV 221


>gi|228943547|ref|ZP_04105982.1| Translocation-enhancing protein tepA [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228973794|ref|ZP_04134371.1| Translocation-enhancing protein tepA [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228980349|ref|ZP_04140660.1| Translocation-enhancing protein tepA [Bacillus thuringiensis Bt407]
 gi|228779454|gb|EEM27710.1| Translocation-enhancing protein tepA [Bacillus thuringiensis Bt407]
 gi|228785946|gb|EEM33948.1| Translocation-enhancing protein tepA [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228816134|gb|EEM62324.1| Translocation-enhancing protein tepA [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326941508|gb|AEA17404.1| translocation-enhancing protein tepA [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 249

 Score = 57.6 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 65/156 (41%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  Q++ +E     + + L +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 70  EHIIPQIVAIEQNPKIEGLLLILNTVGGDVEAGLAISEMVASLSKPTVSLVLGGGHSIGV 129

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +         F    A + +H      +G    + +  + + K++ R+     K+   T
Sbjct: 130 PIAV--STDYSFIAETATMTIHPIRL--TGLVIGVPQTFEYLDKMQERVIRFVTKHSKVT 185

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            +  ++ +       RD    +   +A  +G++D V
Sbjct: 186 EDRFKELMFAKGNLTRDIGTNVIGGDAVKYGLIDDV 221


>gi|52141692|ref|YP_085137.1| translocation-enhancing protein [Bacillus cereus E33L]
 gi|118479016|ref|YP_896167.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bacillus
           thuringiensis str. Al Hakam]
 gi|196034190|ref|ZP_03101600.1| clp protease [Bacillus cereus W]
 gi|196038350|ref|ZP_03105659.1| clp protease [Bacillus cereus NVH0597-99]
 gi|196044682|ref|ZP_03111917.1| clp protease [Bacillus cereus 03BB108]
 gi|206978174|ref|ZP_03239055.1| clp protease [Bacillus cereus H3081.97]
 gi|217961217|ref|YP_002339785.1| clp protease [Bacillus cereus AH187]
 gi|218904924|ref|YP_002452758.1| clp protease [Bacillus cereus AH820]
 gi|222097242|ref|YP_002531299.1| translocation-enhancing protein [Bacillus cereus Q1]
 gi|228916434|ref|ZP_04080001.1| Translocation-enhancing protein tepA [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228928846|ref|ZP_04091878.1| Translocation-enhancing protein tepA [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|229092838|ref|ZP_04223972.1| Translocation-enhancing protein tepA [Bacillus cereus Rock3-42]
 gi|229140438|ref|ZP_04268993.1| Translocation-enhancing protein tepA [Bacillus cereus BDRD-ST26]
 gi|229186034|ref|ZP_04313204.1| Translocation-enhancing protein tepA [Bacillus cereus BGSC 6E1]
 gi|229197907|ref|ZP_04324623.1| Translocation-enhancing protein tepA [Bacillus cereus m1293]
 gi|301055286|ref|YP_003793497.1| peptidase S14 ClpP [Bacillus anthracis CI]
 gi|51975161|gb|AAU16711.1| translocation-enhancing protein [Bacillus cereus E33L]
 gi|118418241|gb|ABK86660.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bacillus
           thuringiensis str. Al Hakam]
 gi|195993264|gb|EDX57222.1| clp protease [Bacillus cereus W]
 gi|196024717|gb|EDX63389.1| clp protease [Bacillus cereus 03BB108]
 gi|196030758|gb|EDX69356.1| clp protease [Bacillus cereus NVH0597-99]
 gi|206743591|gb|EDZ55017.1| clp protease [Bacillus cereus H3081.97]
 gi|217066012|gb|ACJ80262.1| clp protease [Bacillus cereus AH187]
 gi|218538614|gb|ACK91012.1| clp protease [Bacillus cereus AH820]
 gi|221241300|gb|ACM14010.1| translocation-enhancing protein [Bacillus cereus Q1]
 gi|228585625|gb|EEK43727.1| Translocation-enhancing protein tepA [Bacillus cereus m1293]
 gi|228597453|gb|EEK55103.1| Translocation-enhancing protein tepA [Bacillus cereus BGSC 6E1]
 gi|228642999|gb|EEK99275.1| Translocation-enhancing protein tepA [Bacillus cereus BDRD-ST26]
 gi|228690460|gb|EEL44243.1| Translocation-enhancing protein tepA [Bacillus cereus Rock3-42]
 gi|228830653|gb|EEM76258.1| Translocation-enhancing protein tepA [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228843237|gb|EEM88318.1| Translocation-enhancing protein tepA [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|300377455|gb|ADK06359.1| peptidase S14 ClpP [Bacillus cereus biovar anthracis str. CI]
          Length = 249

 Score = 57.6 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 65/156 (41%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  Q++ +E     + + L +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 70  EHIIPQIVAIEQNPKIEGLLLVLNTVGGDVEAGLAISEMVASLSKPTVSLVLGGGHSIGV 129

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +         F    A + +H      +G    + +  + + K++ R+     K+   T
Sbjct: 130 PIAV--STDYSFIAETATMTIHPIRL--TGLVIGVPQTFEYLDKMQERVIRFVTKHSKVT 185

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            +  ++ +       RD    +   +A  +G++D V
Sbjct: 186 EDRFKELMFAKGNLTRDIGTNVIGGDAVKYGLIDDV 221


>gi|229162732|ref|ZP_04290689.1| Translocation-enhancing protein tepA [Bacillus cereus R309803]
 gi|228620614|gb|EEK77483.1| Translocation-enhancing protein tepA [Bacillus cereus R309803]
          Length = 249

 Score = 57.6 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 65/156 (41%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  Q++ +E     + + L +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 70  EHIIPQIVAIEQNPKIEGLLLILNTVGGDVEAGLAISEMVASLSKPTVSLVLGGGHSIGV 129

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +         F    A + +H      +G    + +  + + K++ R+     K+   T
Sbjct: 130 PIAV--STDYSFIAETATMTIHPIRL--TGLVIGVPQTFEYLDKMQERVIRFVTKHSKVT 185

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            +  ++ +       RD    +   +A  +G++D V
Sbjct: 186 EDRFKELMFAKGNLTRDIGTNVIGGDAVKYGLIDDV 221


>gi|229018991|ref|ZP_04175833.1| Translocation-enhancing protein tepA [Bacillus cereus AH1273]
 gi|229025236|ref|ZP_04181658.1| Translocation-enhancing protein tepA [Bacillus cereus AH1272]
 gi|228736064|gb|EEL86637.1| Translocation-enhancing protein tepA [Bacillus cereus AH1272]
 gi|228742319|gb|EEL92477.1| Translocation-enhancing protein tepA [Bacillus cereus AH1273]
          Length = 249

 Score = 57.6 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 65/156 (41%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  Q++ +E     + + L +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 70  EHIIPQIVAIEQNPKIEGLLLILNTVGGDVEAGLAISEMVASLSKPTVSLVLGGGHSIGV 129

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +         F    A + +H      +G    + +  + + K++ R+     K+   T
Sbjct: 130 PIAV--STDYSFIAETATMTIHPIRL--TGLVIGVPQTFEYLDKMQERVIRFVTKHSKVT 185

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            +  ++ +       RD    +   +A  +G++D V
Sbjct: 186 EDRFKELMFAKGNLTRDIGTNVIGGDAVKYGLIDDV 221


>gi|229031427|ref|ZP_04187427.1| Translocation-enhancing protein tepA [Bacillus cereus AH1271]
 gi|228729716|gb|EEL80696.1| Translocation-enhancing protein tepA [Bacillus cereus AH1271]
          Length = 249

 Score = 57.6 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 65/156 (41%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  Q++ +E     + + L +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 70  EHIIPQIVAIEQNPKIEGLLLILNTVGGDVEAGLAISEMVASLSKPTVSLVLGGGHSIGV 129

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +         F    A + +H      +G    + +  + + K++ R+     K+   T
Sbjct: 130 PIAV--STDYSFIAETATMTIHPIRL--TGLVIGVPQTFEYLDKMQERVIRFVTKHSKVT 185

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            +  ++ +       RD    +   +A  +G++D V
Sbjct: 186 EDRFKELMFAKGNLTRDIGTNVIGGDAVKYGLIDDV 221


>gi|30021886|ref|NP_833517.1| translocation-enhancing protein tepA [Bacillus cereus ATCC 14579]
 gi|218234620|ref|YP_002368598.1| clp protease [Bacillus cereus B4264]
 gi|228922511|ref|ZP_04085812.1| Translocation-enhancing protein tepA [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228954073|ref|ZP_04116102.1| Translocation-enhancing protein tepA [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228960002|ref|ZP_04121667.1| Translocation-enhancing protein tepA [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229047482|ref|ZP_04193072.1| Translocation-enhancing protein tepA [Bacillus cereus AH676]
 gi|229071295|ref|ZP_04204518.1| Translocation-enhancing protein tepA [Bacillus cereus F65185]
 gi|229081051|ref|ZP_04213562.1| Translocation-enhancing protein tepA [Bacillus cereus Rock4-2]
 gi|229111268|ref|ZP_04240821.1| Translocation-enhancing protein tepA [Bacillus cereus Rock1-15]
 gi|229129072|ref|ZP_04258045.1| Translocation-enhancing protein tepA [Bacillus cereus BDRD-Cer4]
 gi|229151996|ref|ZP_04280192.1| Translocation-enhancing protein tepA [Bacillus cereus m1550]
 gi|229180074|ref|ZP_04307418.1| Translocation-enhancing protein tepA [Bacillus cereus 172560W]
 gi|29897442|gb|AAP10718.1| Translocation-enhancing protein tepA [Bacillus cereus ATCC 14579]
 gi|218162577|gb|ACK62569.1| clp protease [Bacillus cereus B4264]
 gi|228603283|gb|EEK60760.1| Translocation-enhancing protein tepA [Bacillus cereus 172560W]
 gi|228631551|gb|EEK88184.1| Translocation-enhancing protein tepA [Bacillus cereus m1550]
 gi|228654309|gb|EEL10174.1| Translocation-enhancing protein tepA [Bacillus cereus BDRD-Cer4]
 gi|228672044|gb|EEL27335.1| Translocation-enhancing protein tepA [Bacillus cereus Rock1-15]
 gi|228702255|gb|EEL54730.1| Translocation-enhancing protein tepA [Bacillus cereus Rock4-2]
 gi|228711749|gb|EEL63701.1| Translocation-enhancing protein tepA [Bacillus cereus F65185]
 gi|228723729|gb|EEL75084.1| Translocation-enhancing protein tepA [Bacillus cereus AH676]
 gi|228799745|gb|EEM46697.1| Translocation-enhancing protein tepA [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228805639|gb|EEM52229.1| Translocation-enhancing protein tepA [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228837106|gb|EEM82446.1| Translocation-enhancing protein tepA [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 249

 Score = 57.6 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 65/156 (41%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  Q++ +E     + + L +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 70  EHIIPQIVAIEQNPKIEGLLLILNTVGGDVEAGLAISEMVASLSKPTVSLVLGGGHSIGV 129

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +         F    A + +H      +G    + +  + + K++ R+     K+   T
Sbjct: 130 PIAV--STDYSFIAETATMTIHPIRL--TGLVIGVPQTFEYLDKMQERVIRFVTKHSKVT 185

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            +  ++ +       RD    +   +A  +G++D V
Sbjct: 186 EDRFKELMFAKGNLTRDIGTNVIGGDAVKYGLIDDV 221


>gi|75764280|ref|ZP_00743823.1| Translocation-enhancing protein tepA [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218898895|ref|YP_002447306.1| clp protease [Bacillus cereus G9842]
 gi|228902298|ref|ZP_04066457.1| Translocation-enhancing protein tepA [Bacillus thuringiensis IBL
           4222]
 gi|228909621|ref|ZP_04073444.1| Translocation-enhancing protein tepA [Bacillus thuringiensis IBL
           200]
 gi|228966741|ref|ZP_04127785.1| Translocation-enhancing protein tepA [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|74488232|gb|EAO51905.1| Translocation-enhancing protein tepA [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218544679|gb|ACK97073.1| clp protease [Bacillus cereus G9842]
 gi|228792840|gb|EEM40398.1| Translocation-enhancing protein tepA [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228849910|gb|EEM94741.1| Translocation-enhancing protein tepA [Bacillus thuringiensis IBL
           200]
 gi|228857335|gb|EEN01836.1| Translocation-enhancing protein tepA [Bacillus thuringiensis IBL
           4222]
          Length = 249

 Score = 57.6 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 65/156 (41%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  Q++ +E     + + L +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 70  EHIIPQIVAIEQNPKIEGLLLILNTVGGDVEAGLAISEMVASLSKPTVSLVLGGGHSIGV 129

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +         F    A + +H      +G    + +  + + K++ R+     K+   T
Sbjct: 130 PIAV--STDYSFIAETATMTIHPIRL--TGLVIGVPQTFEYLDKMQERVIRFVTKHSKVT 185

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            +  ++ +       RD    +   +A  +G++D V
Sbjct: 186 EDRFKELMFAKGNLTRDIGTNVIGGDAVKYGLIDDV 221


>gi|227356909|ref|ZP_03841288.1| peptidase S14, ClpP [Proteus mirabilis ATCC 29906]
 gi|227162979|gb|EEI47924.1| peptidase S14, ClpP [Proteus mirabilis ATCC 29906]
          Length = 179

 Score = 57.6 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 4/143 (2%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           EI ++I+S GG + AG   Y+ ++ +   ++T  +    S+ +++  AG K  R   P A
Sbjct: 33  EIKIHISSQGGDIAAGFTAYNFLKSLPVNVTTHNISNVESIANIIYLAGSK--RLINPMA 90

Query: 134 RILLHQPSGGFSG-QASDIERHAQDIVKIKRRLNEIY-VKNCGKTYEEVEKTLDRDHIMS 191
           R LLH    G  G Q+ D ER  + ++ +   L     V N   + ++    +    I +
Sbjct: 91  RFLLHPFHWGLGGLQSVDHERLREWVLSLDNDLERFINVMNTECSQQDWRGIIKASTIYN 150

Query: 192 ASEACDWGVVDKVLMSRIDIEEK 214
           +S+A +  +  ++  + I+  +K
Sbjct: 151 SSDAIELNIASEISDASIESTDK 173


>gi|167464750|ref|ZP_02329839.1| peptidase S14 ClpP [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322382330|ref|ZP_08056237.1| protein export-enhancing factor-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321153683|gb|EFX46058.1| protein export-enhancing factor-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 248

 Score = 57.6 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 70/176 (39%), Gaps = 23/176 (13%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  QL+  E     + +   +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 70  EHIIPQLVAAEQSTKIEGVLFILNTVGGDVEAGLAIAEMIATMSKPTVSIVLGGGHSIGV 129

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +         F    A + +H      +G    + +  + + K++ R+     K+   T
Sbjct: 130 PIAV--STDFTFIAETATMTIHPIRL--TGLVIGVPQTFEYLDKMQDRVVRFVTKHSNVT 185

Query: 177 YEEVEKTL------DRD---HIMSASEACDWGVVDKV---------LMSRIDIEEK 214
            E+ +  +       RD    ++ A  A  +G+++ V         L  RID ++ 
Sbjct: 186 EEQFKHLMFKTGELTRDIGTTVIGAD-AVRYGLINAVGGIGEAMRELYRRIDEKKA 240


>gi|229191921|ref|ZP_04318891.1| Translocation-enhancing protein tepA [Bacillus cereus ATCC 10876]
 gi|228591472|gb|EEK49321.1| Translocation-enhancing protein tepA [Bacillus cereus ATCC 10876]
          Length = 249

 Score = 57.6 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 65/156 (41%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  Q++ +E     + + L +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 70  EHIIPQIVAIEQNPKIEGLLLILNTVGGDVEAGLAISEMVASLSKPTVSLVLGGGHSIGV 129

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +         F    A + +H      +G    + +  + + K++ R+     K+   T
Sbjct: 130 PIAV--STDYSFIAETATMTIHPIRL--TGLVIGVPQTFEYLDKMQERVIRFVTKHSKVT 185

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            +  ++ +       RD    +   +A  +G++D V
Sbjct: 186 EDRFKELMFAKGNLTRDIGTNVIGGDAVKYGLIDDV 221


>gi|170706783|ref|ZP_02897241.1| clp protease [Bacillus anthracis str. A0389]
 gi|170128201|gb|EDS97070.1| clp protease [Bacillus anthracis str. A0389]
          Length = 249

 Score = 57.6 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 65/156 (41%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  Q++ +E     + + + +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 70  EHIIPQIVAIEQNPKIEGLLIVLNTVGGDVEAGLAISEMVASLSKPTVSLVLGGGHSIGV 129

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +         F    A + +H      +G    + +  + + K++ R+     K+   T
Sbjct: 130 PIAV--STDYSFIAETATMTIHPIRL--TGLVIGVPQTFEYLDKMQERVIRFVTKHSKVT 185

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            +  ++ +       RD    +   +A  +G++D V
Sbjct: 186 EDRFKELMFAKGNLTRDIGTNVIGGDAVKYGLIDDV 221


>gi|47569067|ref|ZP_00239756.1| translocation-enhancing protein tepA [Bacillus cereus G9241]
 gi|228986940|ref|ZP_04147066.1| Translocation-enhancing protein tepA [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229157374|ref|ZP_04285452.1| Translocation-enhancing protein tepA [Bacillus cereus ATCC 4342]
 gi|47554229|gb|EAL12591.1| translocation-enhancing protein tepA [Bacillus cereus G9241]
 gi|228626101|gb|EEK82850.1| Translocation-enhancing protein tepA [Bacillus cereus ATCC 4342]
 gi|228772718|gb|EEM21158.1| Translocation-enhancing protein tepA [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 249

 Score = 57.2 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 65/156 (41%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  Q++ +E     + + L +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 70  EHIIPQIVAIEQNPKIEGLLLILNTVGGDVEAGLAISEMVASLSKPTVSLVLGGGHSIGV 129

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +         F    A + +H      +G    + +  + + K++ R+     K+   T
Sbjct: 130 PIAV--STDYSFIAETATMTIHPIRL--TGLVIGVPQTFEYLDKMQERVIRFVTKHSKVT 185

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            +  ++ +       RD    +   +A  +G++D V
Sbjct: 186 EDRFKELMFAKGNLTRDIGTNVIGGDAVKYGLIDDV 221


>gi|229146367|ref|ZP_04274738.1| Translocation-enhancing protein tepA [Bacillus cereus BDRD-ST24]
 gi|296504293|ref|YP_003665993.1| translocation-enhancing protein TepA [Bacillus thuringiensis
           BMB171]
 gi|228637000|gb|EEK93459.1| Translocation-enhancing protein tepA [Bacillus cereus BDRD-ST24]
 gi|296325345|gb|ADH08273.1| translocation-enhancing protein tepA [Bacillus thuringiensis
           BMB171]
          Length = 249

 Score = 57.2 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 65/156 (41%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  Q++ +E     + + L +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 70  EHIIPQIVAIEQNPKIEGLLLILNTVGGDVEAGLAISEMVASLSKPTVSLVLGGGHSIGV 129

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +         F    A + +H      +G    + +  + + K++ R+     K+   T
Sbjct: 130 PIAV--STDYSFIAETATMTIHPIRL--TGLVIGVPQTFEYLDKMQERVIRFVTKHSKVT 185

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            +  ++ +       RD    +   +A  +G++D V
Sbjct: 186 EDRFKELMFAKGNLTRDIGTNVIGGDAVKYGLIDDV 221


>gi|229174462|ref|ZP_04301994.1| Translocation-enhancing protein tepA [Bacillus cereus MM3]
 gi|228609022|gb|EEK66312.1| Translocation-enhancing protein tepA [Bacillus cereus MM3]
          Length = 249

 Score = 57.2 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 65/156 (41%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  Q++ +E     + + L +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 70  EHIIPQIVAIEQNPKIEGLLLILNTVGGDVEAGLAISEMVASLSKPTVSLVLGGGHSIGV 129

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +         F    A + +H      +G    + +  + + K++ R+     K+   T
Sbjct: 130 PIAV--STDYSFIAETATMTIHPIRL--TGLVIGVPQTFEYLDKMQERVIRFVTKHSKVT 185

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            +  ++ +       RD    +   +A  +G++D V
Sbjct: 186 EDRFKELMFAKGNLTRDIGTNVIGGDAVKYGLIDDV 221


>gi|152976162|ref|YP_001375679.1| peptidase S14 ClpP [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152024914|gb|ABS22684.1| peptidase S14 ClpP [Bacillus cytotoxicus NVH 391-98]
          Length = 250

 Score = 57.2 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 65/156 (41%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  Q++ +E     + + L +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 70  EHIIPQIVAIEQNPKIEGLLLILNTVGGDVEAGLAISEMVASLSKPTVSLVLGGGHSIGV 129

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +         +    A + +H      +G    + +  + + K++ R+     K+   T
Sbjct: 130 PIAV--STDYSYIAETATMTIHPIRL--TGLVIGVPQTFEYLDKMQERVIRFVTKHSKVT 185

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            +  ++ +       RD    +   +A  +G++D V
Sbjct: 186 EDRFKELMFAKGNLTRDIGTNVIGGDAVKYGLIDDV 221


>gi|30263799|ref|NP_846176.1| hypothetical protein BA_3932 [Bacillus anthracis str. Ames]
 gi|47529224|ref|YP_020573.1| hypothetical protein GBAA_3932 [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186646|ref|YP_029898.1| hypothetical protein BAS3647 [Bacillus anthracis str. Sterne]
 gi|65321124|ref|ZP_00394083.1| COG0740: Protease subunit of ATP-dependent Clp proteases [Bacillus
           anthracis str. A2012]
 gi|165872618|ref|ZP_02217249.1| clp protease [Bacillus anthracis str. A0488]
 gi|167635861|ref|ZP_02394170.1| clp protease [Bacillus anthracis str. A0442]
 gi|167639876|ref|ZP_02398145.1| clp protease [Bacillus anthracis str. A0193]
 gi|170687843|ref|ZP_02879057.1| clp protease [Bacillus anthracis str. A0465]
 gi|177652109|ref|ZP_02934655.1| clp protease [Bacillus anthracis str. A0174]
 gi|190568387|ref|ZP_03021294.1| clp protease [Bacillus anthracis Tsiankovskii-I]
 gi|227813295|ref|YP_002813304.1| clp protease [Bacillus anthracis str. CDC 684]
 gi|229601887|ref|YP_002868036.1| clp protease [Bacillus anthracis str. A0248]
 gi|254683496|ref|ZP_05147356.1| clp protease [Bacillus anthracis str. CNEVA-9066]
 gi|254722017|ref|ZP_05183806.1| clp protease [Bacillus anthracis str. A1055]
 gi|254735835|ref|ZP_05193541.1| clp protease [Bacillus anthracis str. Western North America
           USA6153]
 gi|254739639|ref|ZP_05197333.1| clp protease [Bacillus anthracis str. Kruger B]
 gi|254755988|ref|ZP_05208019.1| clp protease [Bacillus anthracis str. Vollum]
 gi|254759351|ref|ZP_05211376.1| clp protease [Bacillus anthracis str. Australia 94]
 gi|30258443|gb|AAP27662.1| clp protease [Bacillus anthracis str. Ames]
 gi|47504372|gb|AAT33048.1| clp protease [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180573|gb|AAT55949.1| conserved hypothetical protein [Bacillus anthracis str. Sterne]
 gi|164711650|gb|EDR17196.1| clp protease [Bacillus anthracis str. A0488]
 gi|167512277|gb|EDR87654.1| clp protease [Bacillus anthracis str. A0193]
 gi|167528818|gb|EDR91576.1| clp protease [Bacillus anthracis str. A0442]
 gi|170668159|gb|EDT18908.1| clp protease [Bacillus anthracis str. A0465]
 gi|172082478|gb|EDT67543.1| clp protease [Bacillus anthracis str. A0174]
 gi|190560391|gb|EDV14369.1| clp protease [Bacillus anthracis Tsiankovskii-I]
 gi|227006134|gb|ACP15877.1| clp protease [Bacillus anthracis str. CDC 684]
 gi|229266295|gb|ACQ47932.1| clp protease [Bacillus anthracis str. A0248]
          Length = 249

 Score = 57.2 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 65/156 (41%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  Q++ +E     + + + +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 70  EHIIPQIVAIEQNPKIEGLLIVLNTVGGDVEAGLAISEMVASLSKPTVSLVLGGGHSIGV 129

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +         F    A + +H      +G    + +  + + K++ R+     K+   T
Sbjct: 130 PIAV--STDYSFIAETATMTIHPIRL--TGLVIGVPQTFEYLDKMQERVIRFVTKHSKVT 185

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            +  ++ +       RD    +   +A  +G++D V
Sbjct: 186 EDRFKELMFAKGNLTRDIGTNVIGGDAVKYGLIDDV 221


>gi|221483965|gb|EEE22269.1| hypothetical protein TGGT1_017590 [Toxoplasma gondii GT1]
          Length = 387

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 68/122 (55%), Gaps = 1/122 (0%)

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
           E         +++NS GG + AG+A++D +  ++ P+ T  +G AAS  SLLL+AG  G 
Sbjct: 207 ERTADADPFVIFVNSAGGSLNAGLALFDALSTLQAPVYTVNLGLAASAASLLLAAGSGGR 266

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
           RFA+  + +LLHQP+G  +G+ S+++   +++ K+  ++  +Y            +  +R
Sbjct: 267 RFAVEQSSVLLHQPAGSLAGRDSELQDERREVEKLHEKVVRLYRCETA-EEATRSEGTER 325

Query: 187 DH 188
           D 
Sbjct: 326 DT 327


>gi|160939827|ref|ZP_02087174.1| hypothetical protein CLOBOL_04718 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437261|gb|EDP15026.1| hypothetical protein CLOBOL_04718 [Clostridium bolteae ATCC
           BAA-613]
          Length = 315

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 69/156 (44%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I  +L  +E ++    + + +N+ GG V AG+AI + +  +  P  +  +G + S+G 
Sbjct: 143 DHILPKLAEIEDDDSVDGLLVLLNTSGGDVDAGLAIAEMIASLSLPTVSLVLGGSHSIGV 202

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L         F +P+  +++H      +G      +  +    I+ R+      +    
Sbjct: 203 PLAV--STNYSFIVPSGTMMIHPVR--MTGMVIGTSQTYEYFEMIQDRILTFVSNHADIA 258

Query: 177 YEEVEKTLD------RD--HIMSASEACDWGVVDKV 204
           Y+++ + +       RD   ++  ++A + G++++V
Sbjct: 259 YDQLRELMHNTKMLTRDLGTVLVGTQAVEAGLINQV 294


>gi|228992486|ref|ZP_04152413.1| Translocation-enhancing protein tepA [Bacillus pseudomycoides DSM
           12442]
 gi|229002772|ref|ZP_04160674.1| Translocation-enhancing protein tepA [Bacillus mycoides Rock3-17]
 gi|229008526|ref|ZP_04165954.1| Translocation-enhancing protein tepA [Bacillus mycoides Rock1-4]
 gi|228752750|gb|EEM02350.1| Translocation-enhancing protein tepA [Bacillus mycoides Rock1-4]
 gi|228758487|gb|EEM07632.1| Translocation-enhancing protein tepA [Bacillus mycoides Rock3-17]
 gi|228767120|gb|EEM15756.1| Translocation-enhancing protein tepA [Bacillus pseudomycoides DSM
           12442]
          Length = 249

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 65/156 (41%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  Q++ +E     + + L +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 70  EHVIPQIVAIEQNPKIEGLLLLLNTVGGDVEAGLAISEMVASLSKPTVSLVLGGGHSIGV 129

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +         F    A + +H      +G    + +  + + K++ R+     K+   T
Sbjct: 130 PIAV--STDYSFIAETATMTIHPVRL--TGLVIGVPQTFEYLDKMQERVIRFVTKHSKVT 185

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            +  ++ +       RD    +   +A  +G++D V
Sbjct: 186 EDRFKELMFAKGNLTRDIGTNVIGIDAVKYGLIDDV 221


>gi|294500881|ref|YP_003564581.1| translocation-enhancing protein TepA [Bacillus megaterium QM B1551]
 gi|295706227|ref|YP_003599302.1| translocation-enhancing protein TepA [Bacillus megaterium DSM 319]
 gi|294350818|gb|ADE71147.1| translocation-enhancing protein TepA [Bacillus megaterium QM B1551]
 gi|294803886|gb|ADF40952.1| translocation-enhancing protein TepA [Bacillus megaterium DSM 319]
          Length = 250

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 67/156 (42%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  Q++ +E     + + + +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 73  EHVIPQIVAIEQNPKIEGLLIILNTVGGDVEAGLAIAEMIASLSKPSVSIVLGGGHSIGV 132

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +         +    A + +H      +G    + +  + + K++ R+     ++   +
Sbjct: 133 PIAV--STDYSYIAGTATMTIHPIRL--TGLVIGVPQTFEYLDKMQERVINFVREHSHIS 188

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            E+ ++ +       RD    +   +A  +G++++V
Sbjct: 189 EEKFKELMFSKGNLTRDIGTNVVGGDAVSYGLINEV 224


>gi|229086348|ref|ZP_04218525.1| Translocation-enhancing protein tepA [Bacillus cereus Rock3-44]
 gi|228696960|gb|EEL49768.1| Translocation-enhancing protein tepA [Bacillus cereus Rock3-44]
          Length = 249

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 65/156 (41%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  Q++ +E     + + L +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 70  EHVIPQIVAIEQNPKIEGLLLLLNTVGGDVEAGLAISEMVASLSKPTVSLVLGGGHSIGV 129

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +         F    A + +H      +G    + +  + + K++ R+     K+   T
Sbjct: 130 PIAV--STDYSFIAETATMTIHPVRL--TGLVIGVPQTFEYLDKMQERVIRFVTKHSKVT 185

Query: 177 YEEVEKTL------DRD--HIMSASEACDWGVVDKV 204
            +  ++ +       RD    +   +A  +G++D V
Sbjct: 186 EDRFKELMFAKGNLTRDIGTNVIGIDAVKYGLIDDV 221


>gi|325278016|ref|ZP_08143542.1| Clp protease, putative [Pseudomonas sp. TJI-51]
 gi|324096845|gb|EGB95165.1| Clp protease, putative [Pseudomonas sp. TJI-51]
          Length = 183

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 68/170 (40%), Gaps = 14/170 (8%)

Query: 43  RIVFVTGQIEDHM-ATLI--CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
            I+  TG I       LI  C++ L   AE  Q    L I + GG  + G  +Y+ ++ +
Sbjct: 4   HIIHFTGPINSSTCGNLINTCSKALQQGAEVLQ----LNIATMGGECSYGFTLYNFLRAL 59

Query: 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG--QASDIERHAQD 157
             P+ T  +G   SMG++L  AGE   R A   ++ L H       G    S +  +   
Sbjct: 60  PVPVHTHNLGTVESMGNILFLAGE--WRTACSYSKFLFHPFHWTLHGSVDHSRMAEYTMS 117

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEK---TLDRDHIMSASEACDWGVVDKV 204
           +    +   +I  +      E ++     +    I+   EA   GV+  V
Sbjct: 118 LDYDLQLYAQIVAERTQGAPEVLDVPRYLMAYPRILGPQEALQSGVIHAV 167


>gi|320587789|gb|EFX00264.1| ATP-dependent clp protease proteolytic subunit [Grosmannia
          clavigera kw1407]
          Length = 148

 Score = 56.8 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 15/79 (18%)

Query: 6  CAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF 65
           +   S  V    +P + E T               ERI+ + G ++D ++  I AQLL+
Sbjct: 27 SSATLSRPVASVPMPYITEVT---------------ERIICLNGPVDDTVSAAIVAQLLW 71

Query: 66 LEAENPQKEISLYINSPGG 84
          LE++ P+K I++YINSPGG
Sbjct: 72 LESDAPEKPITMYINSPGG 90



 Score = 54.5 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 32/58 (55%), Gaps = 7/58 (12%)

Query: 159 VKIKRRLNEIYVKNCGK-------TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
            +I+ ++NEI   +  K         + +   ++RD+ ++A E+ + G+VD++L+ R 
Sbjct: 91  ERIRGQVNEIVRSHLNKAFGHEKYDLQSINDMMERDNYLTAEESKEHGIVDEILVKRP 148


>gi|225028438|ref|ZP_03717630.1| hypothetical protein EUBHAL_02712 [Eubacterium hallii DSM 3353]
 gi|224954236|gb|EEG35445.1| hypothetical protein EUBHAL_02712 [Eubacterium hallii DSM 3353]
          Length = 228

 Score = 56.8 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 68/175 (38%), Gaps = 21/175 (12%)

Query: 47  VTGQIEDHMATLIC-----AQLLFLEAENPQKE----ISLYINSPGGVVTAGMAIYDTMQ 97
           +      H+++          LL L  +    +    + L IN+ GG  + G+A  + + 
Sbjct: 33  IGEIEGHHLSSDRIKTTKYEHLLPLLTQVQDNQEIDGLFLLINTVGGDCSCGLAAAEMIA 92

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
            IK P  +  +G + S+G  L  A ++   F  P A ++LH       G      +  + 
Sbjct: 93  SIKKPTVSLVIGDSHSIGVPLSVAADRT--FIAPTATMILHPVRLN--GTIIGAPQTFEY 148

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRD--------HIMSASEACDWGVVDKV 204
              I+ R+      + G     +E+ + R          I+    A + G++D+V
Sbjct: 149 FRLIQDRIVTFVEAHTGVAKSRLERMMIRQGMMVKDLGTILVGKMAVEEGIIDEV 203


>gi|281418096|ref|ZP_06249116.1| signal peptide peptidase SppA, 36K type [Clostridium thermocellum
           JW20]
 gi|281409498|gb|EFB39756.1| signal peptide peptidase SppA, 36K type [Clostridium thermocellum
           JW20]
          Length = 326

 Score = 56.8 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 74/194 (38%), Gaps = 38/194 (19%)

Query: 46  FVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK----P 101
           F++          +   +    +    K I LY+NSPGG V     +Y  ++  K     
Sbjct: 70  FLSNGYNHKETLKLIEDMKNSAS---NKGILLYVNSPGGGVYESDELYLKLKEYKEETGR 126

Query: 102 PISTFCMGQAASMGSLLLSAGEK------------GMRFALPNAR----------ILLHQ 139
           P+ T+   QA S G  +  A +K            G+  +L N +          I +  
Sbjct: 127 PVWTYMSNQACSGGYYISMASDKVFSNRNAWTGSIGVIISLTNLKGLYDNLGIKGIYITS 186

Query: 140 PSGGFSGQASDIERHAQD-------IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
                 G A+D+E   +        + +   +  EI  +    T EEV++  D   I+SA
Sbjct: 187 GRNKAMG-AADLELTDEQRDILQSLVDEAYEQFVEIVAEGRKMTVEEVKRIAD-GRILSA 244

Query: 193 SEACDWGVVDKVLM 206
            +A +  ++D++  
Sbjct: 245 KQALELNLIDEIAT 258


>gi|125973935|ref|YP_001037845.1| signal peptide peptidase SppA, 36K type [Clostridium thermocellum
           ATCC 27405]
 gi|256005058|ref|ZP_05430029.1| signal peptide peptidase SppA, 36K type [Clostridium thermocellum
           DSM 2360]
 gi|125714160|gb|ABN52652.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49
           [Clostridium thermocellum ATCC 27405]
 gi|255991026|gb|EEU01137.1| signal peptide peptidase SppA, 36K type [Clostridium thermocellum
           DSM 2360]
 gi|316939864|gb|ADU73898.1| signal peptide peptidase SppA, 36K type [Clostridium thermocellum
           DSM 1313]
          Length = 326

 Score = 56.8 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 74/194 (38%), Gaps = 38/194 (19%)

Query: 46  FVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK----P 101
           F++          +   +    +    K I LY+NSPGG V     +Y  ++  K     
Sbjct: 70  FLSNGYNHKETLKLIEDMKNSAS---NKGILLYVNSPGGGVYESDELYLKLKEYKEETGR 126

Query: 102 PISTFCMGQAASMGSLLLSAGEK------------GMRFALPNAR----------ILLHQ 139
           P+ T+   QA S G  +  A +K            G+  +L N +          I +  
Sbjct: 127 PVWTYMSNQACSGGYYISMASDKVFSNRNAWTGSIGVIISLTNLKGLYDNLGIKGIYITS 186

Query: 140 PSGGFSGQASDIERHAQD-------IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
                 G A+D+E   +        + +   +  EI  +    T EEV++  D   I+SA
Sbjct: 187 GRNKAMG-AADLELTDEQRDILQSLVDEAYEQFVEIVAEGRKMTVEEVKRIAD-GRILSA 244

Query: 193 SEACDWGVVDKVLM 206
            +A +  ++D++  
Sbjct: 245 KQALELNLIDEIAT 258


>gi|89101082|ref|ZP_01173920.1| TepA [Bacillus sp. NRRL B-14911]
 gi|89084194|gb|EAR63357.1| TepA [Bacillus sp. NRRL B-14911]
          Length = 256

 Score = 56.8 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 68/157 (43%), Gaps = 14/157 (8%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  Q++ +E     + + + +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 79  EHLIPQIVAIEQNPKIEGLLVILNTVGGDVEAGLAISEMLASLSKPTVSIVLGGGHSIGV 138

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            +  + +    F    A + +H      +G    + +  + + K++ R+      +   +
Sbjct: 139 PIAVSCD--YSFIAETATMTIHPIRL--TGLVIGVPQTFEYLDKMQDRVINFVTGHSKVS 194

Query: 177 YEEVEKTL------DRD---HIMSASEACDWGVVDKV 204
            ++ +  +       RD   +++ A  A  +G++D V
Sbjct: 195 EQQFKDLMFAKGNLTRDIGTNVVGAD-AVSYGLIDAV 230


>gi|229162598|ref|ZP_04290558.1| hypothetical protein bcere0009_33700 [Bacillus cereus R309803]
 gi|228620861|gb|EEK77727.1| hypothetical protein bcere0009_33700 [Bacillus cereus R309803]
          Length = 136

 Score = 56.0 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 34/74 (45%)

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
                + +++H+ S    G  + + + A  + K++  + +IY+       EE+   ++ +
Sbjct: 7   IMGAGSMMMIHEASTIVWGSKTLMRKEADMLEKLEDGIIDIYMTRANVEREEIRNMVNEE 66

Query: 188 HIMSASEACDWGVV 201
              SA+E+ + G  
Sbjct: 67  TWFSANESVEIGFA 80


>gi|51892696|ref|YP_075387.1| ATP-dependent Clp protease proteolytic subunit [Symbiobacterium
           thermophilum IAM 14863]
 gi|51856385|dbj|BAD40543.1| ATP-dependent clp protease proteolytic subunit [Symbiobacterium
           thermophilum IAM 14863]
          Length = 260

 Score = 56.0 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 75/182 (41%), Gaps = 22/182 (12%)

Query: 41  KERIVFVTGQIEDHMA----------TLICAQLLFLEAENPQKEISLYINSPGGVVTAGM 90
              ++ + GQ+E H+A            I  QL+ +E     + + L +N+ GG V AG+
Sbjct: 57  NIHLLTIIGQVEGHLALPPQNKTTKYEHIIPQLVAVEQSPEIEGLLLVLNTVGGDVEAGL 116

Query: 91  AIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASD 150
           AI + +  +  P  +  +G   S+G  +         F    A + +H      +G    
Sbjct: 117 AIAEMVASLSKPSVSLVLGGGHSIGVPIAV--STTYSFIAATATMTIHPIRL--TGLVIG 172

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL------DRD--HIMSASEACDWGVVD 202
           + +  + + K++ R+    V N   + E   + +       RD   ++   +A   G++D
Sbjct: 173 VPQTYEYLDKMQDRVVRFVVSNSRISEERFRELMFRTGELARDVGTVVVGPDAVREGLID 232

Query: 203 KV 204
           +V
Sbjct: 233 EV 234


>gi|291280462|ref|YP_003497297.1| signal peptide peptidase SppA [Deferribacter desulfuricans SSM1]
 gi|290755164|dbj|BAI81541.1| signal peptide peptidase SppA [Deferribacter desulfuricans SSM1]
          Length = 285

 Score = 56.0 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 70/190 (36%), Gaps = 31/190 (16%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMG 115
           +  I  +L   E  +  K + + INSPGG V     IY  ++ +K P+        AS G
Sbjct: 53  SEKIVRELRKAEENDFVKGVIIRINSPGGAVAPSQEIYKAIRKVKKPVYAAISTLGASGG 112

Query: 116 SLLLSAGEK----GMRFALPNARILLHQP------------SGGFSGQASDIERHAQDIV 159
             + +A +K    G         I+                    SG+  DI   ++++ 
Sbjct: 113 YYVAAACDKIYVLGGSITGSIGVIMRFSNFKELYDKIGVKFESIKSGKFKDIGSSSREMS 172

Query: 160 K-------------IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           K              K+ +N+I       + + ++K  D   I++  +A   G VDK+  
Sbjct: 173 KEERELLQKAIDNVYKQFVNDILKTR-HISKDIIKKYAD-GRILTGEQALKLGFVDKIGT 230

Query: 207 SRIDIEEKSK 216
                E+  K
Sbjct: 231 YYDAFEDMKK 240


>gi|239928540|ref|ZP_04685493.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
           ghanaensis ATCC 14672]
          Length = 45

 Score = 56.0 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 26/38 (68%)

Query: 172 NCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
           +  +  +++ + ++RD I++A +A  +G++D+++ +R 
Sbjct: 1   HSTRPIDKIREDIERDKILTAEDALQYGLIDQIITTRK 38


>gi|312144009|ref|YP_003995455.1| protein of unknown function DUF107 [Halanaerobium sp.
           'sapolanicus']
 gi|311904660|gb|ADQ15101.1| protein of unknown function DUF107 [Halanaerobium sp.
           'sapolanicus']
          Length = 445

 Score = 56.0 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 76/181 (41%), Gaps = 26/181 (14%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
           + + G+I     + I   L   EAE  ++ I + INS GG V   + I D +      I 
Sbjct: 47  IQLEGEINIAQYSFINDALTKAEAEGAEEFI-IEINSLGGYVDPALRIRDRIFNSPLRII 105

Query: 105 TFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRR 164
           TF  G+A S  +LL   G++            ++  SG   G A    +  + I  +++ 
Sbjct: 106 TFVNGRAWSAAALLALTGDE------------IYISSGSSIGAAETRPQEEKYISALRKE 153

Query: 165 LNEIYVKNCGK----------TYEEVEKTLDRDHI--MSASEACDWGVVDKVLMSRIDIE 212
                 +  G+          +  E+E  ++R+ +  ++A EA + G+ D +  +  ++ 
Sbjct: 154 FA-ATAERTGRNGQIAEAMVDSDLEIESIIEREKLLTLTAREAVELGMADFIAENLNELS 212

Query: 213 E 213
           E
Sbjct: 213 E 213


>gi|238782645|ref|ZP_04626676.1| Peptidase S14, ClpP [Yersinia bercovieri ATCC 43970]
 gi|238716572|gb|EEQ08553.1| Peptidase S14, ClpP [Yersinia bercovieri ATCC 43970]
          Length = 224

 Score = 55.6 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 61/147 (41%), Gaps = 7/147 (4%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           +I ++    E  +  LI +           K + LYINS GG + +G   Y+ ++  + P
Sbjct: 37  KIYYIGDVTEKSVTELISSIDEINANYPTLKHLYLYINSNGGDMDSGYMAYEAVRSSRAP 96

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSG-----GFSGQASDIERHAQD 157
           I+T      AS  ++   A ++  R A+P +  LLH  S          Q + I++  Q 
Sbjct: 97  ITTINSAMVASAATMFYCAAKE--RLAMPLSSFLLHPASASNDTRKGYLQPNHIDQIKQY 154

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTL 184
           +         IY +      E++ K L
Sbjct: 155 VDSSNNVFKNIYKQCTSYNDEDLSKIL 181


>gi|163814155|ref|ZP_02205547.1| hypothetical protein COPEUT_00309 [Coprococcus eutactus ATCC 27759]
 gi|158450604|gb|EDP27599.1| hypothetical protein COPEUT_00309 [Coprococcus eutactus ATCC 27759]
          Length = 237

 Score = 55.6 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 66/141 (46%), Gaps = 20/141 (14%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K + + IN+ GG V +G+AI +    +  P+ T  +G   S+G  L ++G+    F +P 
Sbjct: 79  KGVLVLINTVGGDVESGLAISEMFASLSKPVVTLVLGGGHSIGVPLATSGDA--SFIVPT 136

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           A +++H      +     ++++ + I K++ R+ +  V +   ++++ +K +      +A
Sbjct: 137 ATMVVHPIRTSTA--VLGVKQNFEYIEKMQDRIIDFTVVHSDISHDDFKKYM----FNTA 190

Query: 193 S------------EACDWGVV 201
                        EA   G++
Sbjct: 191 ELTKDVGSVLVGNEAVRAGII 211


>gi|91203949|emb|CAJ71602.1| similar to signal peptide peptidase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 328

 Score = 55.6 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 71/190 (37%), Gaps = 34/190 (17%)

Query: 48  TGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI----KPPI 103
               E  M + +  +L   + +   K I L INSPGG VTA   +Y  +       K  +
Sbjct: 70  GLTEELDMVSRVKEELTLAKMDKQVKAILLRINSPGGKVTASDMMYYEIMRFKEETKKKV 129

Query: 104 STFCMGQAASMGSLLLSAGEKGM-----------RFALPNARILLHQPSGGF-----SGQ 147
               M   AS G  + ++ +K +              +  +   L Q  G       +G+
Sbjct: 130 IACIMDIGASGGYYVAASADKIIAHPTTVTGSIGVIMINLSIEGLLQKVGIADASVKTGE 189

Query: 148 ASDI------------ERHAQDIVKIKRRLNEIYVK-NCGKTYEEVEKTLDRDHIMSASE 194
             D+               ++ +  +  R   +  +   G + E++ +  D   I SA +
Sbjct: 190 HKDMGSPLKKMTEEDRRIFSEILNAMYERFLCVIEENREGISMEKIRELAD-GRIYSAQQ 248

Query: 195 ACDWGVVDKV 204
           A + G++D++
Sbjct: 249 ALENGLIDQI 258


>gi|297619020|ref|YP_003707125.1| hypothetical protein Mvol_0492 [Methanococcus voltae A3]
 gi|297377997|gb|ADI36152.1| hypothetical protein Mvol_0492 [Methanococcus voltae A3]
          Length = 170

 Score = 55.6 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 74/170 (43%), Gaps = 9/170 (5%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           +  F+ G+IE+ M   +       E ++  +E +L+++S GG +   M++ + ++     
Sbjct: 3   KTFFLNGRIEEEMVDKLIK--FIAENDDVAQECTLWLHSQGGGIAHSMSVINLIESSGIF 60

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIK 162
               C G+  S    ++ +  K  RFA  N     H       G   +    A+   ++ 
Sbjct: 61  KKVVCSGEVGSAALNIILSFPKDARFAYDNTVFFTHGICYENGGTVEEYSTLAK-FKELY 119

Query: 163 RRLNEIYVKNCGKTYEEVEKTLDRDH-----IMSASEACDWGVVDKVLMS 207
             +   Y+KN     ++  +  ++++      +S++EA + G++  ++ +
Sbjct: 120 DNITNKYLKNESNDLKKWIED-NKEYNLKLNYISSNEALNMGLITNIIDN 168


>gi|121535282|ref|ZP_01667096.1| peptidase S14, ClpP [Thermosinus carboxydivorans Nor1]
 gi|121306167|gb|EAX47095.1| peptidase S14, ClpP [Thermosinus carboxydivorans Nor1]
          Length = 260

 Score = 55.3 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 65/163 (39%), Gaps = 28/163 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  Q+  +E     + + L +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 84  EHVMPQIAAIEQNPDIEGLLLLLNTVGGDVEAGLAIAELIASLSKPTVSLVLGGGHSIGV 143

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA----QDIVKIKRRLNEIYVKN 172
            +  +      F + +A + +H          + +   A      + K++ R+N   V +
Sbjct: 144 PIAVSA--NYSFIVESASMTIHPIRL------TGLVIGAPSSFDYLEKMQERINRFVVSH 195

Query: 173 CGKTYEEVEKTLDRDHIMSAS------------EACDWGVVDK 203
              T ++ ++ L      +              +A  +G++D+
Sbjct: 196 SKITEKKWKELL----FKTGELSRDIGTNVVGRDAVRYGLIDE 234


>gi|302386512|ref|YP_003822334.1| peptidase S14 ClpP [Clostridium saccharolyticum WM1]
 gi|302197140|gb|ADL04711.1| peptidase S14 ClpP [Clostridium saccharolyticum WM1]
          Length = 260

 Score = 55.3 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 81/195 (41%), Gaps = 22/195 (11%)

Query: 28  RGERSYDIYSRLLKERIVFVTGQIEDHMA----------TLICAQLLFLEAENPQKEISL 77
            G+ + D  +   K  ++ + G++E H              I  +L  +E ++  + + +
Sbjct: 51  YGQVTLDDNANKRKIHLITIIGEVEGHENLSGNSKATKYDHILPKLAEIEDDDSVEGLLV 110

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
            +N+ GG V AG+AI + +  +  P  +  +G + S+G  L         F +P   +++
Sbjct: 111 LLNTSGGDVDAGLAIAEMIASLSIPTVSLVLGGSHSIGVPLAVC--TDYSFIVPTGTMMI 168

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL------DRD--HI 189
           H      +G      +  +    I+ R+      +    Y+++++ +       RD   +
Sbjct: 169 HPVR--MTGMVIGASQTYEYFEMIQDRILSFVSNHAKIAYDQLKRLMLNTEMLTRDLGTV 226

Query: 190 MSASEACDWGVVDKV 204
           +   E    G++++V
Sbjct: 227 LVGEETVKEGLINEV 241


>gi|205373589|ref|ZP_03226392.1| TepA [Bacillus coahuilensis m4-4]
          Length = 250

 Score = 54.9 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 96/240 (40%), Gaps = 28/240 (11%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMA---- 56
           M+         E+      P++ +    G+ +    S       + + GQIE HM     
Sbjct: 7   MNQSPDKNTGKEEKSSSPSPLMEKIQQLGQTNVPQMSNDSNIHCLTIVGQIEGHMQLPPQ 66

Query: 57  ------TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQ 110
                   +  QL+ +E     + + + +N+ GG V AG+AI + +  +  P  +  +G 
Sbjct: 67  NKTTKYEHMIPQLVAIEQNPKIEGLLVILNTVGGDVEAGLAIAEMLASLSKPTVSIVLGG 126

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYV 170
             S+G  + +A +    F    A + +H      +G    + +  + + K++ R+ +   
Sbjct: 127 GHSIGVPIATACD--YSFIAETATMTIHPVRL--TGLVIGVPQTFEYMDKMQDRVVKFVT 182

Query: 171 KNCGKTYEEVEKTL------DRD--HIMSASEACDWGVVDKV------LMSRIDIEEKSK 216
            +   + E+ +  +       RD    +   +A  +G++++V      +    ++ E+SK
Sbjct: 183 GHSNISEEDFKDLMFAKGNLTRDIGTNVVGDDAVKYGLMNEVGGLGAAMKKLNELIEQSK 242


>gi|330503383|ref|YP_004380252.1| peptidase S14, ClpP [Pseudomonas mendocina NK-01]
 gi|328917669|gb|AEB58500.1| peptidase S14, ClpP [Pseudomonas mendocina NK-01]
          Length = 183

 Score = 54.9 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 69/168 (41%), Gaps = 10/168 (5%)

Query: 40  LKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE-ISLYINSPGGVVTAGMAIYDTMQF 98
           ++  +V  T  I  +    +  +    +A +   + + L I + GG  + G ++Y+ +  
Sbjct: 1   MRTHVVHFTAPINSYTCGQLIDK--CSQAIHQGADELVLKIATMGGECSYGFSLYNFLIS 58

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG--QASDIERHAQ 156
           +  P+ T  +G   SMG+++  AGE   R A  +++ L H      +G    + +  +A 
Sbjct: 59  LPVPVKTHNLGTVESMGNIIFLAGET--RTACQHSKFLFHPFHWTVNGAVDHARMSEYAM 116

Query: 157 DIVKIKRRLNEIYVKNCG---KTYEEVEKTLDRDHIMSASEACDWGVV 201
            +    +   +I  +           +E  +    I+   +A   GV+
Sbjct: 117 SLDYDLQLYADIVAERTAGAETPLNVMECLMSAPRILDVEQALAAGVI 164


>gi|146307288|ref|YP_001187753.1| peptidase S14, ClpP [Pseudomonas mendocina ymp]
 gi|145575489|gb|ABP85021.1| peptidase S14, ClpP [Pseudomonas mendocina ymp]
          Length = 183

 Score = 54.9 bits (131), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 58/134 (43%), Gaps = 9/134 (6%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           + I + GG  + G ++Y+ +  +  P+ T  +G   SMG+++  AG+   R A  +++ L
Sbjct: 37  IKIATMGGECSYGFSLYNFLISLPVPVKTHNLGTVESMGNIIFLAGQT--RTACQHSKFL 94

Query: 137 LHQPSGGFSG--QASDIERHAQDIVKIKRRLNEIYVKNCGK----TYEEVEKTLDRDHIM 190
            H      +G    + +  +A  +     +L    V  C +      + ++       I+
Sbjct: 95  FHPFHWTVNGAVDHTRMSEYAMSLDY-DLQLYAAIVDECTQGAQAPLDVLDCLTAAPRIL 153

Query: 191 SASEACDWGVVDKV 204
           +  EA   G++  V
Sbjct: 154 NVEEALAAGIIHSV 167


>gi|255568672|ref|XP_002525308.1| conserved hypothetical protein [Ricinus communis]
 gi|223535403|gb|EEF37076.1| conserved hypothetical protein [Ricinus communis]
          Length = 75

 Score = 54.5 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 134 RILLHQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
            +++HQP   F   Q  +     ++++K++  L  IY +   K    V + ++ D  MSA
Sbjct: 1   MVMIHQPIADFYEAQIREFLLEVEELLKLREILTRIYAQRTEKPLWVVFEEIETDVFMSA 60

Query: 193 SEACDWGVVDKV 204
           +EA   G+VD +
Sbjct: 61  AEAQAHGIVDLI 72


>gi|195650143|gb|ACG44539.1| hypothetical protein [Zea mays]
          Length = 95

 Score = 54.5 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 150 DIERHAQDIVK-IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           D+ +H   I+    +++++++    G+  + V++  +RD  MS+SEA D+G++D +L +R
Sbjct: 35  DVPKHRSHIMHDHLQKVDKMFAAFTGQLLDMVQQWTERDQFMSSSEAMDFGLLDALLETR 94


>gi|194172975|ref|YP_002003619.1| ClpP ATP-dependent protease subunit [Escherichia phage rv5]
 gi|114796013|gb|ABI79187.1| ClpP ATP-dependent protease subunit [Escherichia phage rv5]
          Length = 349

 Score = 54.5 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 8/138 (5%)

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
            ++L  +    P++ I + INSPGG V   MA     +  +  +     G   S G++L 
Sbjct: 61  MSRLQTIRMAQPEESIRVIINSPGGCVHIAMAYLQAFRESQASVVAHAEGMCCSAGTILW 120

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCG--KTY 177
              ++  R   P+   + H   GG  G   ++      +   K+R   +  K  G   T 
Sbjct: 121 LGCKE--RTVAPDTEFMFHYYQGGTYGNGVNMN---TQVSYWKKRFERLIEKYYGGVLTE 175

Query: 178 EEVEKTLD-RDHIMSASE 194
           +E+       +  +   E
Sbjct: 176 DEIASITAGGEVWLDGEE 193


>gi|222083135|ref|YP_002542500.1| hypothetical protein Arad_9986 [Agrobacterium radiobacter K84]
 gi|221727814|gb|ACM30903.1| hypothetical protein Arad_9986 [Agrobacterium radiobacter K84]
          Length = 295

 Score = 54.5 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 72/164 (43%), Gaps = 7/164 (4%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
           ++ + QI+D     +   L+ L ++   K I L INS GG +++G+++Y  +  +   I+
Sbjct: 115 LYFSQQIDDKSTLELTGGLINLRSQ-GYKTIYLMINSAGGDISSGISLYHLLCSLDVTIN 173

Query: 105 TFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG---QASDIERHAQDIVKI 161
           T+ +    S   LL  AG++  R A   +    H     F+       +I      +   
Sbjct: 174 TYAISNVESAAILLFLAGKE--RVANKESIFAFHSGRLSFNNEKLTPDEINERYTALQND 231

Query: 162 KRRLNEIYVKNCGKTYEEVEKTLDRD-HIMSASEACDWGVVDKV 204
             R+ EIY +    + ++    L      + ASEA + G+  ++
Sbjct: 232 DDRMKEIYKERLSISDKQYGDLLGSQLRFVRASEALNIGLATRI 275


>gi|78356487|ref|YP_387936.1| signal peptide peptidase A [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78218892|gb|ABB38241.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 320

 Score = 54.5 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 62/184 (33%), Gaps = 46/184 (25%)

Query: 59  ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS-- 116
           + A+L   E +   + + L ++SPGG VT+   +Y+ +   K    T  +     M +  
Sbjct: 72  VVARLRMAEMDPAVRAVILTVDSPGGSVTSSDVLYNEIMRFKQRTGTRVVALQMDMATSG 131

Query: 117 ----------LLL----SAGEKGMRFALPNARILLH----QPSGGFSGQASDI------- 151
                     ++       G  G  F  PN   L+     Q     SG   DI       
Sbjct: 132 GYYVSIAADRIIAHPSTITGSIGTIFMRPNVTGLMEKIGVQAVTTKSGAHKDIGSPFREN 191

Query: 152 -----ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD------HIMSASEACDWGV 200
                      +  +  R  ++  +          +   R+       IM+A EA + G+
Sbjct: 192 TPEEQAILQNMVTTLNSRFIKLVSER--------RELQGRESSYSDARIMTAQEALELGL 243

Query: 201 VDKV 204
           VD +
Sbjct: 244 VDSI 247


>gi|269121370|ref|YP_003309547.1| signal peptide peptidase SppA, 36K type [Sebaldella termitidis ATCC
           33386]
 gi|268615248|gb|ACZ09616.1| signal peptide peptidase SppA, 36K type [Sebaldella termitidis ATCC
           33386]
          Length = 584

 Score = 54.5 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 77/202 (38%), Gaps = 32/202 (15%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMA---TLICAQLLFLEAENPQKEISLYINSPGGVVTAGM 90
           D  + +  E  +       +++A     I  ++  L+  N  K + L INSPGG   +  
Sbjct: 304 DKIAVIYAEGPIMYDENTGNNIAITPVSIAEKIKQLKKVNNLKGVVLRINSPGGSALSAE 363

Query: 91  AIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK------------GMRFALPNARILLH 138
            IY     +  P+       AAS G  +  AG+K            G+   +P  +    
Sbjct: 364 LIYQMFSEMPVPVYVSMGSTAASGGYYIAMAGDKIFADKSTITGSVGVVSTIPKIKKAAG 423

Query: 139 Q----PSGGFSGQASDI-----ERHAQDIVKIKRRLNEIY-------VKNCGKTYEEVEK 182
                 S    G+ SD+     +   +   +++  + + Y        KN G + +++E+
Sbjct: 424 NLGIDSSSITKGKYSDLYDPFVDLSEESTERLRTSMQDTYKEFKSRVEKNRGISADKLEE 483

Query: 183 TLDRDHIMSASEACDWGVVDKV 204
                  +   EA + G+VD++
Sbjct: 484 YAQGKVWL-GDEAKEIGLVDQI 504


>gi|224123592|ref|XP_002330159.1| predicted protein [Populus trichocarpa]
 gi|222871615|gb|EEF08746.1| predicted protein [Populus trichocarpa]
          Length = 109

 Score = 54.1 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 5/79 (6%)

Query: 87  TAGMAIYDTMQFIKPPISTFCMGQAASM---GSLLLSAGEKGMRFALPNARILLHQPSGG 143
           T G AI+D+M  +K    T  +G A +      LLL+AG KG R  +P+A+ ++ QP   
Sbjct: 3   TEGFAIHDSMMQLKNEKHTVAVGAAGAAGGQACLLLAAGTKGKRHMMPHAKAVIQQPRVP 62

Query: 144 FSG--QASDIERHAQDIVK 160
            SG   ASD+   A++I+ 
Sbjct: 63  SSGLMPASDVLIRAKEILW 81


>gi|160945600|ref|ZP_02092826.1| hypothetical protein FAEPRAM212_03129 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443331|gb|EDP20336.1| hypothetical protein FAEPRAM212_03129 [Faecalibacterium prausnitzii
           M21/2]
          Length = 227

 Score = 54.1 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 64/155 (41%), Gaps = 12/155 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  QL+ ++ +   + + + +N+ GG V AG+A+ + +  I  P +T  +G   S+G 
Sbjct: 59  EHVIPQLVAVQEDPRIEGLLVLLNTVGGDVEAGLALAELIASISKPSATLVLGGGHSIGI 118

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L  +      F +P A + +H      SG    + +      ++++R+      + G  
Sbjct: 119 PLAVSARH--SFIVPTATMTVHPVRH--SGLILGVPQTMHCFEQMQQRITGFVAAHSGMP 174

Query: 177 YEEVEKT--------LDRDHIMSASEACDWGVVDK 203
            +   +         +D   ++    A    ++D+
Sbjct: 175 EKRYTQLMLHTGELVMDMGTVLDGRRAVKEKLIDE 209


>gi|325171179|ref|YP_004251154.1| ClpP ATP-dependent protease subunit [Vibrio phage ICP1]
 gi|323512574|gb|ADX88029.1| ClpP ATP-dependent protease subunit [Vibrio phage ICP1]
 gi|323512801|gb|ADX88255.1| ClpP ATP-dependent protease subunit [Vibrio phage ICP1_2006_D]
 gi|323513029|gb|ADX88482.1| ClpP ATP-dependent protease subunit [Vibrio phage ICP1_2006_C]
 gi|323513254|gb|ADX88706.1| ClpP ATP-dependent protease subunit [Vibrio phage ICP1_2006_B]
 gi|323513481|gb|ADX88932.1| ClpP ATP-dependent protease subunit [Vibrio phage ICP1_2006_A]
 gi|323513943|gb|ADX89392.1| ClpP ATP-dependent protease subunit [Vibrio phage ICP1_2001_A]
 gi|323514171|gb|ADX89619.1| ClpP ATP-dependent protease subunit [Vibrio phage ICP1_2004_A]
          Length = 326

 Score = 54.1 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 63/143 (44%), Gaps = 10/143 (6%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           + + INS GG      A  +TM      I T       S  +++   G++       +A 
Sbjct: 47  VHIIINSGGGRDDTMKAFLNTMNQSPAHIITEIESDCCSAVTMIFLNGDEFR--VSDDAE 104

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD-RDHIMSAS 193
            ++H  + G  G+ +++ +  +   K   RL   Y K+   T EE+E  ++ +D  M++ 
Sbjct: 105 FMIHTGAYGTRGKENNVRQQVEFFAKSNARLMYKYYKHF-LTPEEIEAAIEGKDFWMNSD 163

Query: 194 EACDWGVVDKVLMSRIDIEEKSK 216
           E     ++++ L  R  + E+ +
Sbjct: 164 E-----IIER-LEQRQKLFEEEE 180


>gi|300717741|ref|YP_003742544.1| Clp protease [Erwinia billingiae Eb661]
 gi|299063577|emb|CAX60697.1| Clp protease [Erwinia billingiae Eb661]
          Length = 180

 Score = 54.1 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 66/156 (42%), Gaps = 12/156 (7%)

Query: 59  ICAQLLFLEAENPQKEI-------SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQA 111
           + AQ + L  +   + I       +++I+S GG + +G   Y  ++ +  P+ T  +   
Sbjct: 11  VTAQTVSLFQQCCLQAIGNGATSLNVHISSGGGDLISGFTAYHFLKSLSIPVITHNISNV 70

Query: 112 ASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIK---RRLNEI 168
            S+ +++  AG +  R   P +R LLH    GFS  A+D  R A+    +     R  EI
Sbjct: 71  ESVANIIFMAGSE--RRTNPGSRFLLHPLHWGFSTPAADHARIAEWSKCLDNDFERFVEI 128

Query: 169 YVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
                 ++       ++   I+ A  A   G+   V
Sbjct: 129 LNSETQRSDINWGDMINAATILDADAATSSGMATSV 164


>gi|225378146|ref|ZP_03755367.1| hypothetical protein ROSEINA2194_03806 [Roseburia inulinivorans DSM
           16841]
 gi|225209952|gb|EEG92306.1| hypothetical protein ROSEINA2194_03806 [Roseburia inulinivorans DSM
           16841]
          Length = 231

 Score = 54.1 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 65/156 (41%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  +L  +E       + L +N+ GG V +G+AI + +  I  P  +  +G + S+G 
Sbjct: 55  EHVLPKLAEVEENKNVDGLLLLLNTVGGDVESGLAIAEMVASIDKPTVSLVLGGSHSIGV 114

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L         F +P+  +++H      +G     +       +++ R+ +  V++    
Sbjct: 115 PLAV--STDYSFIVPSGTMVIHPVR--MNGTVIGAQPTYDYFKQMQDRILKFVVQHSKAE 170

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
              +E+ +        D   I+   +A + G++D +
Sbjct: 171 QNRLEELMMNTGILTKDLGTILVGGQAVEEGLIDSI 206


>gi|323513712|gb|ADX89162.1| ClpP ATP-dependent protease subunit [Vibrio phage ICP1_2005_A]
          Length = 326

 Score = 54.1 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 63/143 (44%), Gaps = 10/143 (6%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           + + INS GG      A  +TM      I T       S  +++   G++       +A 
Sbjct: 47  VHIIINSGGGRDDTMKAFLNTMNQSPAHIITEIESDCCSAVTMIFLNGDEFR--VSDDAE 104

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD-RDHIMSAS 193
            ++H  + G  G+ +++ +  +   K   RL   Y K+   T EE+E  ++ +D  M++ 
Sbjct: 105 FMIHTGAYGTRGKENNVRQQVEFFAKSNARLMYKYYKHF-LTPEEIEAAIEGKDFWMNSD 163

Query: 194 EACDWGVVDKVLMSRIDIEEKSK 216
           E     ++++ L  R  + E+ +
Sbjct: 164 E-----IIER-LEQRQKLFEEEE 180


>gi|308800044|ref|XP_003074803.1| Clp protease 2 proteolytic subunit (ISS) [Ostreococcus tauri]
 gi|116061343|emb|CAL52061.1| Clp protease 2 proteolytic subunit (ISS) [Ostreococcus tauri]
          Length = 87

 Score = 54.1 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 9/89 (10%)

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF-------IKPPISTFCMGQAASMG 115
           + +L      ++I+LYINSPGG VTAGMA++DTM+          P I+  C        
Sbjct: 1   MKYLAHSARCRDITLYINSPGGSVTAGMAVFDTMRHVHASLTPFSPTINLCCKS--CDPP 58

Query: 116 SLLLSAGEKGMRFALPNARILLHQPSGGF 144
              LS   +  R   P   I  H+ S  F
Sbjct: 59  RFALSCNSRKKRKKRPLHEITSHEWSHHF 87


>gi|154484793|ref|ZP_02027241.1| hypothetical protein EUBVEN_02511 [Eubacterium ventriosum ATCC
           27560]
 gi|149734641|gb|EDM50558.1| hypothetical protein EUBVEN_02511 [Eubacterium ventriosum ATCC
           27560]
          Length = 217

 Score = 54.1 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 66/156 (42%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I   L  +E +     + + +N+ GG V  G+AI + +  +  P  +  +G + S+G 
Sbjct: 46  EHILPMLAKIEDDQDIDGLLIILNTVGGDVECGLAIAEMIASLSKPTVSLVLGGSHSIGV 105

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L  + +    F +P   +++H      +G    + +  +   KI+ R+N+  + +C   
Sbjct: 106 PLAVSAD--YSFIVPTGTMVIHPVR--MNGMFIGVPQTYEYFKKIQERINDFVINHCHIR 161

Query: 177 YEEVEKTLDRDHIMS--------ASEACDWGVVDKV 204
                + ++   I++          +    G++D++
Sbjct: 162 ENRFSELMNETEILTKDVGSILVGKQTVKEGIIDEI 197


>gi|307692099|ref|ZP_07634336.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Ruminococcaceae bacterium D16]
          Length = 236

 Score = 53.7 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 62/156 (39%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +   L  +E       + + +N+ GG V AG+ I + +  +  P  +  +G   S+G 
Sbjct: 61  EHVMPLLAMVEESEAIDGLLVLLNTVGGDVEAGLGIAELIAGMSKPTVSLVLGGGHSIGV 120

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L  + ++   F  P+A + +H       G    + +      +++ R+ +    N    
Sbjct: 121 PLAVSAKR--SFIAPSAAMTIHPVRLN--GLVIGVPQTFYYFERVQERITQFVTANSKIK 176

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
            E   + +        D   ++   EA + G++D++
Sbjct: 177 RETFTELMLKTGELAADVGSVIYGQEAVELGLIDEI 212


>gi|329910999|ref|ZP_08275428.1| hypothetical protein IMCC9480_360 [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546015|gb|EGF31093.1| hypothetical protein IMCC9480_360 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 186

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 69/165 (41%), Gaps = 9/165 (5%)

Query: 41  KERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           ++    + G I   M   +   L  + A++      + + S GG V+ G+ +Y+T++   
Sbjct: 10  RDGYFTLAGDINSDMVRRVFDALEKMTADDVD-TAHILLQSNGGYVSDGICLYNTLRNAP 68

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS-GQASD-IERHAQDI 158
             +  +  G  AS+   +  AG++  R A   AR ++H+       G   + ++  A  +
Sbjct: 69  LDLVMYNGGAVASIAVTVFLAGQR--RIASDTARFMIHKSHATAGVGARPETLQIIADGL 126

Query: 159 VKIKRRLNEIYVKNCG--KTYEEVEKTLDRDHIMSASEACDWGVV 201
           +   RR   I  ++    +   +V      D  +S  +A D  ++
Sbjct: 127 MADDRRTEAILRRHIKLTQRMWDVHAHS--DLHLSPQDALDTRLI 169


>gi|291557791|emb|CBL34908.1| ATP-dependent Clp protease proteolytic subunit ClpP [Eubacterium
           siraeum V10Sc8a]
          Length = 306

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 63/154 (40%), Gaps = 12/154 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I   L+ +E +     + + +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 65  EHIMPALVAIEQDMSIDGLLIILNTVGGDVEAGLAISELIAGMSKPTVSIVVGGGHSIGV 124

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L  +  K   F +P+A + +H      +G    I +      +++ R+     KN    
Sbjct: 125 PLAVSARK--SFIVPSATMTIHPVR--MNGLLLGIPQTLSYFERMQERIINFVSKNSRIK 180

Query: 177 YEEVEKT--------LDRDHIMSASEACDWGVVD 202
            E   +         +D   ++    A + G++D
Sbjct: 181 PERFRELMMKKDELVMDVGSVLDGETAVNEGLID 214


>gi|167750805|ref|ZP_02422932.1| hypothetical protein EUBSIR_01787 [Eubacterium siraeum DSM 15702]
 gi|167656240|gb|EDS00370.1| hypothetical protein EUBSIR_01787 [Eubacterium siraeum DSM 15702]
          Length = 320

 Score = 53.3 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 63/154 (40%), Gaps = 12/154 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             I   L+ +E +     + + +N+ GG V AG+AI + +  +  P  +  +G   S+G 
Sbjct: 79  EHIMPALVAIEQDMSIDGLLIILNTVGGDVEAGLAISELIAGMSKPTVSIVVGGGHSIGV 138

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L  +  K   F +P+A + +H      +G    I +      +++ R+     KN    
Sbjct: 139 PLAVSARK--SFIVPSATMTIHPVR--MNGLLLGIPQTLSYFERMQERIINFVSKNSRIK 194

Query: 177 YEEVEKT--------LDRDHIMSASEACDWGVVD 202
            E   +         +D   ++    A + G++D
Sbjct: 195 PERFRELMMKKDELVMDVGSVLDGETAVNEGLID 228


>gi|228969755|ref|ZP_04130523.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228789948|gb|EEM37762.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar sotto str. T04001]
          Length = 138

 Score = 53.3 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 21/49 (42%)

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            +    R +   YV   GK+ EE+   +  +  M   +A +    D+++
Sbjct: 1   MLKITDRAIVNAYVIKSGKSEEELLNMMAEETWMGPQQALENNFADEIM 49


>gi|163782343|ref|ZP_02177341.1| nodulation competitiveness protein NfeD [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159882376|gb|EDP75882.1| nodulation competitiveness protein NfeD [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 439

 Score = 53.3 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 12/148 (8%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCM---GQAASMGSLLLSAGEKGMRFALPNA 133
           L +N+PGG+  +   +    Q    P+  F     G+AAS G+++  + E       P  
Sbjct: 53  LQLNTPGGLAESMRRVVQRFQRSPLPVVVFVYPPGGRAASAGAIITVSAEVA--AMAPGT 110

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRL-------NEIYVKNCGKTYEEVEKTLDR 186
            I    P     G   D + + ++   +K ++            K  G+  + VEK +  
Sbjct: 111 NIGAAHPVQIGGGMPGDKKENKEEKDVMKEKILQDMLAFVRSIAKEKGRNVKVVEKMVKE 170

Query: 187 DHIMSASEACDWGVVDKVLMSRIDIEEK 214
              +SA EA   GV+D +     ++ +K
Sbjct: 171 SLSLSAEEALREGVIDLIARDMKELLKK 198


>gi|312961504|ref|ZP_07776005.1| clp protease [Pseudomonas fluorescens WH6]
 gi|311284183|gb|EFQ62763.1| clp protease [Pseudomonas fluorescens WH6]
          Length = 185

 Score = 53.3 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 63/153 (41%), Gaps = 21/153 (13%)

Query: 65  FLEA-ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
            L+A E     + L +++ GG    G  +Y  ++ +  P+     G   SMG +L  A  
Sbjct: 24  CLDAIEEGASSLLLNLSTTGGSTNFGFTLYTFLKALPVPLCAINAGNIESMGIILFLAAN 83

Query: 124 KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRL---NEIYVKNCGKTYEEV 180
           +  R   P++R L+H  +  FS  + D +R  + +  +   L    +IY        E +
Sbjct: 84  R--RITAPHSRFLIHPMNWYFSQNSVDHQRLREYLSSLDNDLARYVKIYE------LETL 135

Query: 181 EKTLDRDHI--MSAS-------EACDWGVVDKV 204
           +     D    +SA        E+  +G+  +V
Sbjct: 136 QAETQLDIFKCLSAEEKVIAAHESLAYGIAHEV 168


>gi|228956209|ref|ZP_04118090.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228803468|gb|EEM50206.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
          Length = 121

 Score = 53.3 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 34/65 (52%), Gaps = 2/65 (3%)

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC--GKTYEEVEKTLDRDHIMSAS 193
           ++H+P     G A+ + + A+D+  ++  +  +Y +N   G   E +++ +D +  +S  
Sbjct: 1   MVHKPWTVSRGNANVLRKMAEDLDNLEAGIMNVYKENLKEGIEIEVIQQLVDAETWLSGE 60

Query: 194 EACDW 198
           EA  +
Sbjct: 61  EAEKY 65


>gi|118197645|ref|YP_874038.1| ClpP protease [Thermus phage phiYS40]
 gi|116266336|gb|ABJ91419.1| ClpP protease [Thermus phage phiYS40]
          Length = 237

 Score = 52.9 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 53/136 (38%), Gaps = 13/136 (9%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
            I +  ++ GG V   M + + ++  +  +        AS G  +  + ++  RF   N+
Sbjct: 73  PIIVQFSTFGGDVMQAMRVINLIKGFERDVIFVANSIIASAGVYIFLSAKESNRFVTSNS 132

Query: 134 RILLH-------QPSGGFSGQASDI-ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
             ++H       QP G     + DI E   +    +K      ++K  G   + + K   
Sbjct: 133 FFIMHDFLVNHPQPIG-----SKDIVENLDKQYKVLKTIFENEFIKKIGLKKKVIGKGAH 187

Query: 186 RDHIMSASEACDWGVV 201
           +D  ++  EA  + + 
Sbjct: 188 KDIYITPEEAIKYNIA 203


>gi|167037548|ref|YP_001665126.1| hypothetical protein Teth39_1135 [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115963|ref|YP_004186122.1| hypothetical protein Thebr_1163 [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166856382|gb|ABY94790.1| protein of unknown function DUF107 [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319929054|gb|ADV79739.1| protein of unknown function DUF107 [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 436

 Score = 52.9 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 54/145 (37%), Gaps = 25/145 (17%)

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           IN+PGG+V A + I  T+     P + +   QA S G L+  + E             L+
Sbjct: 71  INTPGGLVDAAVEISQTILNSPVPTAAYVNSQATSAGVLIAISCEN------------LY 118

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH---------- 188
              G   G A  + +  + I   + +L     +  G+    V    D D           
Sbjct: 119 MAPGSTIGAAETVPKEEKTISYWRSKLEGA-AERRGRDPRIVAAMADADVEIEGLKERGK 177

Query: 189 --IMSASEACDWGVVDKVLMSRIDI 211
              ++A +A +  + D +   R ++
Sbjct: 178 ILSLTAKKALELKLADGIAADRKEL 202


>gi|194017679|ref|ZP_03056289.1| YqeZ [Bacillus pumilus ATCC 7061]
 gi|194010579|gb|EDW20151.1| YqeZ [Bacillus pumilus ATCC 7061]
          Length = 414

 Score = 52.9 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 10/139 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
           +    +          K I L IN+PGG V A + I DT++    P++ F   +A S G+
Sbjct: 24  SQFIERSFEQAKSERAKHIILDINTPGGAVDAALEIADTIRASDIPVTAFVNHRALSAGA 83

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L    ++   +  PN ++          G A+D +  +  + ++         +  G+ 
Sbjct: 84  FLALNADQI--YMTPNGKMGAA-AIIDGEGNAADQKSESLWLAEMSDA-----AEKQGRD 135

Query: 177 YEEVEKTLDRDHIMSASEA 195
            +      D D  + A EA
Sbjct: 136 PKYALAMADVD--IDAKEA 152


>gi|212722416|ref|NP_001132797.1| hypothetical protein LOC100194286 [Zea mays]
 gi|194695418|gb|ACF81793.1| unknown [Zea mays]
          Length = 158

 Score = 52.9 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 6/57 (10%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQK 73
           G  PMV+E      R   + S+L + RI+   G +ED MA +I AQLL+L+A +P K
Sbjct: 85  GPSPMVME------RFQSVVSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAIDPNK 135


>gi|147770313|emb|CAN66990.1| hypothetical protein VITISV_005166 [Vitis vinifera]
          Length = 176

 Score = 52.9 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 23/39 (58%)

Query: 169 YVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
              + G+++E++ +  DRD  +S  EA ++   D V+++
Sbjct: 119 LSYHIGQSFEKINQNTDRDFFISTKEAKEYRFTDGVILN 157


>gi|284161288|ref|YP_003399911.1| hypothetical protein Arcpr_0167 [Archaeoglobus profundus DSM 5631]
 gi|284011285|gb|ADB57238.1| protein of unknown function DUF107 [Archaeoglobus profundus DSM
           5631]
          Length = 416

 Score = 52.9 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 76/176 (43%), Gaps = 18/176 (10%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
           + + G+I       +  Q   L      + + + +++PGG++++   I  T+     P+ 
Sbjct: 25  IDIKGEINQGTV-ELVRQGFDLAMRENAQAVLIVLDTPGGLLSSTKEIVSTIMNSGIPVI 83

Query: 105 TFCM--GQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIK 162
           T+      +AS G+++L +G             +    +G   G A+ +    ++  K  
Sbjct: 84  TYVPKGAFSASAGTIILLSGH------------ISAMANGTSLGSATPVGLSEEEKNKTI 131

Query: 163 RRLN---EIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
             +    E   +  G+  E V+K +     ++A EA + GV+D +  SR ++ EK+
Sbjct: 132 NYVASYLESIAEARGRPKEIVKKFVTEGISLTAREAYEKGVIDILADSREELFEKA 187


>gi|228966617|ref|ZP_04127665.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228793088|gb|EEM40642.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
           thuringiensis serovar sotto str. T04001]
          Length = 134

 Score = 52.6 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 21/49 (42%)

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            +    R +   YV   GK+ EE+   +  +  M   +A +    D+++
Sbjct: 1   MLKITDRAIVNAYVIKSGKSEEELLNMMAEETWMGPQQALENNFADEIM 49


>gi|310815708|ref|YP_003963672.1| phage terminase GpA [Ketogulonicigenium vulgare Y25]
 gi|308754443|gb|ADO42372.1| phage terminase GpA [Ketogulonicigenium vulgare Y25]
          Length = 709

 Score = 52.6 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 5/130 (3%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
            +++ +NS GG+ T G AIY  ++     ++    G AAS  SL+  AG+         A
Sbjct: 35  PLTVNLNSGGGIATEGQAIYTLLKEYPGEVTIVVNGIAASAASLIAMAGDHI--IMPEGA 92

Query: 134 RILLHQPSGGF---SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
            +++H P+       G  +D  + A+ +  I      IY    G + E   K +  +   
Sbjct: 93  IMMIHDPASWAVEGRGTEADHLKAAKHLGVIANAYAAIYAARAGISPEAARKIMQVETYY 152

Query: 191 SASEACDWGV 200
              +A   G 
Sbjct: 153 DGPQAVRAGF 162


>gi|242240064|ref|YP_002988245.1| peptidase S14 ClpP [Dickeya dadantii Ech703]
 gi|242132121|gb|ACS86423.1| peptidase S14 ClpP [Dickeya dadantii Ech703]
          Length = 226

 Score = 52.6 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 68/158 (43%), Gaps = 9/158 (5%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQ-KEISLYINSPGGVVTAGMAIYDTMQFIKPPI 103
           ++ TG +  H  T +   L          + I LYINS GG + +G + Y  ++  + P+
Sbjct: 38  MYFTGAVNQHNITELTTALDEANMRFKNAQAIYLYINSRGGEMDSGHSGYLAIRSSRIPV 97

Query: 104 STFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQ--ASDI-ERHAQDIVK 160
           +T  +    S  ++L    +   R  L +  I++H P  G   +  A D+ + H Q +  
Sbjct: 98  TTVDLSVVGSAATMLFCGAQ--NRVMLKDTLIMIHAPKVGIGEKEAAPDMLDSHHQWMDN 155

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTL---DRDHIMSASEA 195
               L  IY +    + +E+ + L   D    ++  +A
Sbjct: 156 YVGMLKNIYRECTSLSDDELRQRLYSEDNHLFLNNQDA 193


>gi|153868794|ref|ZP_01998537.1| hypothetical protein BGP_1871 [Beggiatoa sp. PS]
 gi|152074637|gb|EDN71473.1| hypothetical protein BGP_1871 [Beggiatoa sp. PS]
          Length = 190

 Score = 52.6 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 2/99 (2%)

Query: 86  VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS 145
           V  G  I + M     P+       AAS+ +++ +  E+   +A PNA IL HQ  G   
Sbjct: 5   VMEGAKILEAMHSSHAPVYVVVKTMAASLAAVITTLAEE--SYAYPNAIILHHQLFGSAE 62

Query: 146 GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
           G    I+   +   +  +R+        G T E+  + +
Sbjct: 63  GNPQQIKEQLEIAQEWTQRIMRPVAGKMGVTVEKFVQQM 101


>gi|296133921|ref|YP_003641168.1| protein of unknown function DUF107 [Thermincola sp. JR]
 gi|296032499|gb|ADG83267.1| protein of unknown function DUF107 [Thermincola potens JR]
          Length = 450

 Score = 52.2 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 75/176 (42%), Gaps = 26/176 (14%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
           + + G+IE  MA+ +   L   E +   K++   I++PGG++ +   I   +   + P  
Sbjct: 45  IPIKGEIEPGMASFVERSLDKAE-QMGAKKVVFEIDTPGGLIDSAQRIKTRIFNAQVPTV 103

Query: 105 TFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRR 164
            F  G+A S G L+  A E+            ++   G   G A  +  + + +   +  
Sbjct: 104 AFINGEAKSAGVLIALAAEE------------IYMTPGTAIGAAEPVPNNPKILASWRSD 151

Query: 165 LNEIYVKNCGKTYEEVEKTLDR----DHI--------MSASEACDWGVVDKVLMSR 208
           L E   +  G+  + V    DR    ++I        ++A +A + G+ DK++  +
Sbjct: 152 LEEA-AEARGRNPKIVAGMADRNVVIENIKEKGEILSLTAKKAVELGIADKIVPDK 206


>gi|18314240|ref|NP_560907.1| protease IV, conjectural [Pyrobaculum aerophilum str. IM2]
 gi|18161836|gb|AAL65089.1| protease IV, conjectural [Pyrobaculum aerophilum str. IM2]
          Length = 608

 Score = 52.2 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 69/186 (37%), Gaps = 33/186 (17%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPI 103
           IV V   I D+    +   +  L+ +N    + L INSPGG V A   +Y T++ +   +
Sbjct: 89  IVPVDQPIFDYYVDFLIKYVKKLQFDNKTAGVILLINSPGGAVGATERLYSTIKGLNKTV 148

Query: 104 STFCMGQAASMGSLLLSAGEKGMRFALPNARI--------------LLHQP-------SG 142
                G AAS      +A   G  +A P++ +              L+  P         
Sbjct: 149 YAVVAGLAASGA--YYTAVAAGRIYATPSSWVGSIGVVALLWPDEYLIDLPDYIYTTGPF 206

Query: 143 GFSGQASDIERHAQDIVKIKRRLNEIYVK-NCGK---TYEEVEKTLDRDHIMSASEACDW 198
            + G   D+     DI K +       +K   G+     E  E       I +A  A   
Sbjct: 207 KYYGM--DLTEFYNDIEKTRANFVAAVLKGRAGRLKADPEVFETA----KIFNAETALRL 260

Query: 199 GVVDKV 204
           G++DK+
Sbjct: 261 GLIDKI 266


>gi|295103105|emb|CBL00649.1| ATP-dependent Clp protease proteolytic subunit ClpP
           [Faecalibacterium prausnitzii SL3/3]
          Length = 227

 Score = 51.8 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 63/155 (40%), Gaps = 12/155 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  QL+ ++ +   + + + +N+ GG V  G+A+ + +  I  P +T  +G   S+G 
Sbjct: 59  EHVIPQLVAVQEDPRIEGLLVLLNTVGGDVETGLALAELIASISKPSATLVLGGGHSIGI 118

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L  +      F +P A + +H      SG    + +      ++++R+      + G  
Sbjct: 119 PLAVSARH--SFIVPTATMTVHPVRH--SGLILGVPQTMHCFEQMQQRITGFVAAHSGMP 174

Query: 177 YEEVEKT--------LDRDHIMSASEACDWGVVDK 203
            +   +         +D   ++    A    ++D+
Sbjct: 175 EKRYTQLMLHTGELVMDMGTVLDGRRAVKEKLIDE 209


>gi|70732065|ref|YP_261821.1| Clp protease [Pseudomonas fluorescens Pf-5]
 gi|68346364|gb|AAY93970.1| clp protease, putative [Pseudomonas fluorescens Pf-5]
          Length = 185

 Score = 51.8 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 69/176 (39%), Gaps = 23/176 (13%)

Query: 42  ERIVFVTGQIEDHMATLICAQLLFLEA-ENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           E IV    QI+   +     +   L+A E     + L +++ GG    G  +Y  ++ + 
Sbjct: 3   EHIVHFHCQIDQSTSERF--RDSCLQAIEEGASSLLLNLSTTGGSTNFGFTLYTFLKSLP 60

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
            P+     G   SMG +L  A  +  R   P++R L+H  +  FS  + D +R  + +  
Sbjct: 61  VPLCAINAGNIESMGIILFLAANR--RITTPHSRFLIHPMNWYFSQNSVDHQRLREYLSS 118

Query: 161 IKRRL---NEIYVKNCGKTYEEVEKTLDRDHI--MSAS-------EACDWGVVDKV 204
           +   L    +IY        E        D    +SA        E+  +G+  +V
Sbjct: 119 LDNDLARYVKIYE------IETAAAETQLDIFKCLSAEEKVIAAHESLAYGIAHEV 168


>gi|323487027|ref|ZP_08092339.1| translocation-enhancing protein TepA [Clostridium symbiosum
           WAL-14163]
 gi|323692069|ref|ZP_08106316.1| peptidase S14 ClpP [Clostridium symbiosum WAL-14673]
 gi|323399675|gb|EGA92061.1| translocation-enhancing protein TepA [Clostridium symbiosum
           WAL-14163]
 gi|323503869|gb|EGB19684.1| peptidase S14 ClpP [Clostridium symbiosum WAL-14673]
          Length = 269

 Score = 51.8 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 72/179 (40%), Gaps = 12/179 (6%)

Query: 46  FVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIST 105
            ++G  +      I  +L  +E       + + IN+ GG V+ G+A+ + +  +  P  +
Sbjct: 87  NLSGNTKTTKYEHILPKLAEIEDSREVDGVLVMINTVGGDVSCGLALAEMIASLSKPTVS 146

Query: 106 FCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRL 165
             +G + S+G  L         F +P   +++H      SG      +       I+ R+
Sbjct: 147 LVIGDSHSIGVPLAV--ATDYSFIVPTGTMMIHPVR--MSGTVIGAVQTYDYFEMIQDRI 202

Query: 166 NEIYVKNCGKTYEEVEKTL--------DRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
                 +    Y+++ + +        D   ++  S+A   G++ +V   R  +++ ++
Sbjct: 203 LNFVSGHSQIAYDQLRRLMLNTEMLTKDLGTVLVGSDAVKEGLICEVGGIREALQKLNR 261


>gi|71907555|ref|YP_285142.1| hypothetical protein Daro_1926 [Dechloromonas aromatica RCB]
 gi|71847176|gb|AAZ46672.1| conserved hypothetical protein [Dechloromonas aromatica RCB]
          Length = 207

 Score = 51.8 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 57/134 (42%), Gaps = 12/134 (8%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           L + +    + ++INS GG    G+ I + +      + T    +A SM +L+  +G++ 
Sbjct: 56  LRSASETDLVYIHINSSGGDFNTGLQIINNIFSSNARVVTILEARAYSMAALIFLSGDEL 115

Query: 126 MRFALPNARILLHQPSGGFSG----QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVE 181
                 N +++ H  SG F+G    Q +++        K+  RL   ++ +      E+ 
Sbjct: 116 --IVHDNCQLMFHIYSGIFAGKGNEQQAEVAAVGNWFEKVMSRLCSPFLSDT-----EIT 168

Query: 182 KTLD-RDHIMSASE 194
             L   D  M + E
Sbjct: 169 NILKGSDVWMDSDE 182


>gi|257468386|ref|ZP_05632480.1| protease IV [Fusobacterium ulcerans ATCC 49185]
 gi|317062659|ref|ZP_07927144.1| protease IV [Fusobacterium ulcerans ATCC 49185]
 gi|313688335|gb|EFS25170.1| protease IV [Fusobacterium ulcerans ATCC 49185]
          Length = 584

 Score = 51.8 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 54/240 (22%), Positives = 92/240 (38%), Gaps = 48/240 (20%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFV----TGQIEDHMA 56
           +SFE      S++  LG        ++  +R   I + +  E  +++     G   +   
Sbjct: 287 LSFESYNSFLSKNSLLG--------SSTNKRKDKI-ALIYAEGTMYMDSPSGGISGNTTP 337

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP--PISTFCMGQAASM 114
            ++  ++     ++  K I L INSPGG   +   I + +       PI     G AAS 
Sbjct: 338 NVLIEEINKALKDDGVKGIVLRINSPGGSALSANIISNKIIEANKIKPIYVSIGGVAASG 397

Query: 115 GSLLLSAGEK------------GMRFALPNARILLHQPSGGFS----GQASDIERHAQDI 158
           G  L ++GEK            G+   +PN + +L   S        G+ SDI    +D 
Sbjct: 398 GYYLAASGEKIYADKESLTGSIGVVSIIPNIKKMLGNVSINVDEVKKGEYSDIYSMVKDF 457

Query: 159 VKIKRRLNEIYVKN------------CGKTYEE--VEKTLDRDHIMSASEACDWGVVDKV 204
              KR  +++Y  N             G+      VEK       +   EA + G+VD++
Sbjct: 458 DADKR--DKLYASNLKVYNEFIDTVSFGRKLNRQHVEKIAQGKVWL-GEEALELGLVDEI 514


>gi|160898904|ref|YP_001564486.1| hypothetical protein Daci_3465 [Delftia acidovorans SPH-1]
 gi|160364488|gb|ABX36101.1| hypothetical protein Daci_3465 [Delftia acidovorans SPH-1]
          Length = 140

 Score = 51.8 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 2/75 (2%)

Query: 125 GMRFALPNARILLHQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
           G R       I+   P       G   D+   A  +      +  +Y    G    E   
Sbjct: 45  GRRRDPDGRWIVSDDPQRLAVAVGNRHDMTDTAAVLAPFDAAMAALYAHRSGIAEAEAAM 104

Query: 183 TLDRDHIMSASEACD 197
            +DR+  + A +A D
Sbjct: 105 LMDRETWIGAQQAVD 119


>gi|18313592|ref|NP_560259.1| protease IV, conjectural [Pyrobaculum aerophilum str. IM2]
 gi|18161137|gb|AAL64441.1| protease IV, conjectural [Pyrobaculum aerophilum str. IM2]
          Length = 548

 Score = 51.4 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 64/171 (37%), Gaps = 29/171 (16%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             + + L+ +        I L INSPGG V+A  A+Y T+  I         G AAS   
Sbjct: 57  DKLISALIAVAQRGDVAGIVLLINSPGGTVSATEALYTTVAGINKTKYAVVNGLAASGAY 116

Query: 117 LLLSAGEKGMRFALPNAR------ILLHQPSGGFSGQAS-------------DIERHAQD 157
            +         +A P++       I +  P   F                  ++  +  D
Sbjct: 117 YVAV--ATERIYATPSSWVGSIGVIAVMWPEEYFYDIPDYIYTTGPLKYYGRELTDYYND 174

Query: 158 IVKIKRRLNEIYVK-NCGK---TYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           I +++    +  +K   G+   + +  E       I +A +A + G+VD++
Sbjct: 175 IERVRLNFVQAVLKGRAGRIKASPDVFETAS----IFTADQAKELGLVDEI 221


>gi|221133367|ref|ZP_03559672.1| hypothetical protein GHTCC_00435 [Glaciecola sp. HTCC2999]
          Length = 201

 Score = 51.0 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 2/88 (2%)

Query: 64  LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
             L        I L+IN+PGG++ +   I D +   K  +     G  AS G+++  A  
Sbjct: 51  FILHTAEIDTTIILHINTPGGIIDSAFMIVDAIHHSKAKVIGKLSGTVASAGTIIAMACH 110

Query: 124 KGMRFALPNARILLHQPSGGFSGQASDI 151
                   +   ++H  SGG +G+  ++
Sbjct: 111 DLE--VSEHLSFMIHNYSGGMAGKGHEM 136


>gi|291279199|ref|YP_003496034.1| membrane-bound serine protease [Deferribacter desulfuricans SSM1]
 gi|290753901|dbj|BAI80278.1| membrane-bound serine protease [Deferribacter desulfuricans SSM1]
          Length = 426

 Score = 51.0 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 60/141 (42%), Gaps = 13/141 (9%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCM---GQAASMGSLLLSAGEKGMRFALPNA 133
           LY+N+PGG++T+   I  ++   + P+ T       +A S GS ++ A    + F   N 
Sbjct: 69  LYLNTPGGLLTSTREIVQSIFTSQIPVITVVSPPGARAGSAGSFIVLASHYAIMFEGTN- 127

Query: 134 RILLHQPSGGFSGQAS-DIERHAQD--IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
            I    P   F      D+ +  ++  I  +K        +   +  E+    +      
Sbjct: 128 -IGAAHPVSIFGKDIDGDMRKKIENDTIAFMKS-----IAEKRNRNIEKAISMVKDSKSY 181

Query: 191 SASEACDWGVVDKVLMSRIDI 211
           +A EA  + ++DKV+ +  ++
Sbjct: 182 TAQEALKFKLIDKVVKNNQEL 202


>gi|327394887|dbj|BAK12309.1| crotonase/enoyl-coenzyme A (CoA) hydratase superfamily [Pantoea
           ananatis AJ13355]
          Length = 222

 Score = 51.0 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 9/132 (6%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYI+SPGG + AG   Y  ++    P++T       S  +++    +K  R  + ++  L
Sbjct: 73  LYISSPGGDIDAGKIGYQVVKNSPIPVTTVNASSVESSATMIYCGAQK--RQVMGDSIFL 130

Query: 137 LHQPS--GGFSGQASD--IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL---DRDHI 189
           LH P+         S+  ++   +   + +  +  IY      T E++EK     D   +
Sbjct: 131 LHAPTVGNAPRSNVSENMLDEKTEFTSRYRNVIKTIYQSCTHLTDEQIEKITYSEDNHKL 190

Query: 190 MSASEACDWGVV 201
           +   +A   G+ 
Sbjct: 191 LDNKQALATGIA 202


>gi|260494495|ref|ZP_05814625.1| signal peptide peptidase SppA, 67K type [Fusobacterium sp. 3_1_33]
 gi|260197657|gb|EEW95174.1| signal peptide peptidase SppA, 67K type [Fusobacterium sp. 3_1_33]
          Length = 551

 Score = 51.0 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 76/195 (38%), Gaps = 36/195 (18%)

Query: 44  IVFVTGQIEDHMA-------TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           I+ + G+I+   +         +  +L  LE     K + L INSPGG       IY  +
Sbjct: 287 IINLEGEIDTRESKESIINYDNVVEKLDELEDIKNLKGLVLRINSPGGSALESEKIYQKL 346

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEK------------GMRFALPNARILLHQPSGGF 144
           + ++ PI        AS G  + + G+K            G+    P     +++     
Sbjct: 347 KKLEIPIYVSMGDLCASGGYYIATVGKKLFANPVTLTGSIGVVVLYPEFTETINKLKVNM 406

Query: 145 SGQAS----DI-ERHAQDIVKIKRR----LNEIYVKNC-------GKTYEEVEKTLDRDH 188
            G +     DI +  ++   + K +    +NE+Y +           + E++EK      
Sbjct: 407 EGFSKGKGFDIFDIFSKLSEESKEKIIYSMNEVYSEFKEHVIQARNISEEDLEKIAGGRV 466

Query: 189 IMSASEACDWGVVDK 203
            +  S+A + G+VD+
Sbjct: 467 WL-GSQAKENGLVDE 480


>gi|206900657|ref|YP_002250483.1| YqeZ [Dictyoglomus thermophilum H-6-12]
 gi|206739760|gb|ACI18818.1| YqeZ [Dictyoglomus thermophilum H-6-12]
          Length = 423

 Score = 50.6 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 68/175 (38%), Gaps = 8/175 (4%)

Query: 35  IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           IY++     I+ + G IE  +A+ +   +         K     I++ GG V A + I D
Sbjct: 18  IYAQNQNVYIIPIKGTIELGLASFVERSIRE---HPNAKAFIFEIDTFGGRVDAAIKIRD 74

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           T+         F   +A S G+L+  + EK      P+  I   +P        S ++  
Sbjct: 75  TILATPTLTIAFIKDRAWSAGALIALSCEKI--VISPSGSIGAAEPRPADEKTISALKAE 132

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS--ASEACDWGVVDKVLMS 207
            +   K + R N           E +     +  I++  A EA  W + D++L +
Sbjct: 133 FESTAKKRNR-NPKIAAAMVDADEVIPGLKQKGKILTLYAEEAKKWKIADEILEN 186


>gi|145591098|ref|YP_001153100.1| peptidase S49 [Pyrobaculum arsenaticum DSM 13514]
 gi|145282866|gb|ABP50448.1| peptidase S49 [Pyrobaculum arsenaticum DSM 13514]
          Length = 552

 Score = 50.6 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 68/184 (36%), Gaps = 29/184 (15%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPI 103
           +V +   ++      +   L+ L        + L INSPGG V+A  A+Y  +  +    
Sbjct: 47  LVPIDFVLDSSPVDGVIRDLVSLAQRKDVAGVVLVINSPGGTVSATEALYSALAGLNKTK 106

Query: 104 STFCMGQAASMGSLLLSAGEKGMRFALPNARI------LLHQPSGGFSGQAS-------- 149
                G AAS    +  A EK   +A P++ +       +  P   F             
Sbjct: 107 YAVVNGLAASGAYYVAMAAEKI--YATPSSWVGSIGVVAVMWPDEYFYDIPDYVYTTGPL 164

Query: 150 -----DIERHAQDIVKIKRRLNEIYVK-NCGKTYEEVEKT---LDRDHIMSASEACDWGV 200
                ++  +  DI +++    +  ++   G+    ++      +   I +A +A   G+
Sbjct: 165 KYYGKELTDYYNDIERVRMNFVQAVLRGRAGR----IKADPQVFETAAIFTAEDALRLGL 220

Query: 201 VDKV 204
           VD V
Sbjct: 221 VDAV 224


>gi|288931153|ref|YP_003435213.1| hypothetical protein Ferp_0768 [Ferroglobus placidus DSM 10642]
 gi|288893401|gb|ADC64938.1| protein of unknown function DUF107 [Ferroglobus placidus DSM 10642]
          Length = 424

 Score = 50.2 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 65/158 (41%), Gaps = 9/158 (5%)

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM---GQAASMGS 116
             +   +  E     I + +++PGG+V +   I   +   K P+ T+       +AS GS
Sbjct: 38  IERAFKIAEEENADAILITLDTPGGLVKSTEKIVSMILSSKIPVVTYVYPQGAFSASAGS 97

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
           ++L AG          +       + G  G   + E+  + +        +   +  G+ 
Sbjct: 98  IILIAGHVAAMSEGT-SVGAATPIAVGVEGTKVE-EKAVKYL----ASYVKSIAEKRGRN 151

Query: 177 YEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
              +EK +   + +SA EA  + V+D +  S+ ++ EK
Sbjct: 152 ATAIEKFVTEAYSLSAKEALKYNVIDVIANSKEELFEK 189


>gi|237744633|ref|ZP_04575114.1| protease IV [Fusobacterium sp. 7_1]
 gi|229431862|gb|EEO42074.1| protease IV [Fusobacterium sp. 7_1]
          Length = 551

 Score = 50.2 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 76/195 (38%), Gaps = 36/195 (18%)

Query: 44  IVFVTGQIEDHMA-------TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           I+ + G+I+   +         +  +L  LE     K + L INSPGG       IY  +
Sbjct: 287 IINLEGEIDTRESKESIINYDNVVEKLDELEDIKNLKGLVLRINSPGGSALESEKIYQKL 346

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEK------------GMRFALPNARILLHQPSGGF 144
           + ++ PI        AS G  + + G+K            G+    P     +++     
Sbjct: 347 KKLEIPIYVSMGDLCASGGYYIATVGKKLFANPVTLTGSIGVVVLYPEFTETINKLKVNM 406

Query: 145 SGQAS----DI-ERHAQDIVKIKRR----LNEIYVKNC-------GKTYEEVEKTLDRDH 188
            G +     DI +  ++   + K +    +NE+Y +           + E++EK      
Sbjct: 407 EGFSKGKGFDIFDIFSKLSEESKEKIIYSMNEVYSEFKEHVIQARNISEEDLEKIAGGRV 466

Query: 189 IMSASEACDWGVVDK 203
            +  S+A + G+VD+
Sbjct: 467 WL-GSQAKENGLVDE 480


>gi|209965644|ref|YP_002298559.1| ATP-dependent Clp protease proteolytic subunit 2, putative
           [Rhodospirillum centenum SW]
 gi|209959110|gb|ACI99746.1| ATP-dependent Clp protease proteolytic subunit 2, putative
           [Rhodospirillum centenum SW]
          Length = 208

 Score = 50.2 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 6/118 (5%)

Query: 88  AGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQ 147
           AG+A ++ ++ +    +T+ +G   S+  L    G +  R A P +  L H  S  F+  
Sbjct: 76  AGLAAFNQLRGLPLRFTTYNLGSVDSVAILPFLLGRE--RVADPWSTFLFHGVSWAFAAN 133

Query: 148 ----ASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
                S +      I   +R L+ I     G   E+V +      I++A EA   G+ 
Sbjct: 134 GEVAPSQVADAHACIASHERVLSGITAACTGLPLEDVRRMRAASTIVAAEEAVALGIA 191


>gi|157693039|ref|YP_001487501.1| serine peptidase [Bacillus pumilus SAFR-032]
 gi|157681797|gb|ABV62941.1| possible S49 family serine peptidase [Bacillus pumilus SAFR-032]
          Length = 437

 Score = 50.2 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 55/139 (39%), Gaps = 10/139 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
           +    +          K I L IN+PGG V A + I DT++    P++ F   +A S G+
Sbjct: 47  SKFIERSFEHAKSERAKHIILDINTPGGAVDAALEIADTIRASDIPVTAFVNHRALSAGA 106

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L    ++   +  PN ++          G A+D +  +  + ++         +  G+ 
Sbjct: 107 FLALNADQI--YMTPNGKMGAA-AIIDGEGNAADQKSESLWLAEMSDA-----AEKQGRD 158

Query: 177 YEEVEKTLDRDHIMSASEA 195
            +      D D  + A +A
Sbjct: 159 PKYALAMADPD--IDAKDA 175


>gi|225175869|ref|ZP_03729862.1| signal peptide peptidase SppA, 36K type [Dethiobacter alkaliphilus
           AHT 1]
 gi|225168793|gb|EEG77594.1| signal peptide peptidase SppA, 36K type [Dethiobacter alkaliphilus
           AHT 1]
          Length = 304

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 69/176 (39%), Gaps = 30/176 (17%)

Query: 58  LICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDT---MQFIKPPISTFCMGQAASM 114
            I  QL    A+     + L INSPGG   A   +Y+    ++    P+       AAS 
Sbjct: 69  QIIGQLQDAAADRDVAAVVLRINSPGGTPAASQEVYNEVQRLKESGKPVVVSVGEMAASG 128

Query: 115 GSLLLSAGEKGM-----------RFALPNARILLHQPSG-----GFSGQASDIERHAQDI 158
           G  + SA ++ +                   + L++  G       SGQ  D+   A+ +
Sbjct: 129 GYWIASAADEIVANPASVTGSIGVIMETTNFVELYEMLGIESEVFKSGQYKDMGSAARPL 188

Query: 159 VKIKRRLNEIYVKN-CGKTYEEVE--KTLDRD--------HIMSASEACDWGVVDK 203
              +R + +  V +   +  + V   ++LDR+         I +  +A + G+VD+
Sbjct: 189 SDDEREIIQSMVDDIFQQFVDVVASGRSLDREAVLEVADGRIFTGRQAKELGLVDR 244


>gi|296120521|ref|YP_003628299.1| hypothetical protein Plim_0248 [Planctomyces limnophilus DSM 3776]
 gi|296012861|gb|ADG66100.1| hypothetical protein Plim_0248 [Planctomyces limnophilus DSM 3776]
          Length = 227

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 60/158 (37%), Gaps = 8/158 (5%)

Query: 50  QIEDHMATLICAQ----LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIST 105
           + E  +A  +  Q    L  L     +    +YI+S GG    G+A+   ++      + 
Sbjct: 35  EWEMTIAGDLFEQQTELLEKLVELPRRSAGLIYIDSCGGNAYVGLALASIIRLRGLRAAA 94

Query: 106 FCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQ--ASDIERHAQDIVKIKR 163
              G+ +S   + L+A  +  R+  P+A +L H        Q    +    A+    ++ 
Sbjct: 95  VVTGECSSAALMPLAACRE--RYVTPHASLLFHPIRWQSDDQLKLEEAVEWARHFRWMES 152

Query: 164 RLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
             +++  +    + E + +       +S  E  D G+ 
Sbjct: 153 DQDQLLARLFNCSVELITEWSRPGRFLSGRELADAGLA 190


>gi|291618509|ref|YP_003521251.1| Hypothetical Protein PANA_2956 [Pantoea ananatis LMG 20103]
 gi|291153539|gb|ADD78123.1| Hypothetical Protein PANA_2956 [Pantoea ananatis LMG 20103]
          Length = 178

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 9/132 (6%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LYI+SPGG + AG   Y  ++    P++T       S  +++    +K  R  + ++  L
Sbjct: 29  LYISSPGGDIDAGKIGYQVVKNSPIPVTTVNASSVESSATMIYCGAQK--RQVMGDSIFL 86

Query: 137 LHQPS--GGFSGQASD--IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL---DRDHI 189
           LH P+         S+  ++   +   + +  +  IY      T E++EK     D   +
Sbjct: 87  LHAPTVGNAPRSNVSENMLDEKTEFTSRYRNMIKTIYQSCTHLTDEQIEKITYSEDNHKL 146

Query: 190 MSASEACDWGVV 201
           +   +A   G+ 
Sbjct: 147 LDNKQALATGIA 158


>gi|296122406|ref|YP_003630184.1| signal peptide peptidase SppA, 36K type [Planctomyces limnophilus
           DSM 3776]
 gi|296014746|gb|ADG67985.1| signal peptide peptidase SppA, 36K type [Planctomyces limnophilus
           DSM 3776]
          Length = 338

 Score = 49.9 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 50/215 (23%), Positives = 84/215 (39%), Gaps = 41/215 (19%)

Query: 31  RSYDIYSRLLK------ERI--VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSP 82
           RS ++  R L       +RI  + V+G I   +   I  Q+     +   K + L I+SP
Sbjct: 50  RSPEVSERFLSGNSSTTQRIAVLRVSGTIMPPLTERIIRQIEVAAEDERVKGVLLTIDSP 109

Query: 83  GGVVTAGMAIYDTMQ--FIKPPISTFCMGQAASMGSLLLS-AGEKGMRFALPNAR---IL 136
           GG V     IY  ++    K PIS      AAS G  +   AG KG  FA P      I 
Sbjct: 110 GGFVADSHQIYHALEKLRAKKPISIQMKRLAASGGYYIAMGAGTKGQIFAEPTTWTGSIG 169

Query: 137 LHQPSGGFS------GQASDIERHAQD------IVKIKRRLNEIYVKNCGKTYEEVEK-- 182
           +  P    S      G +SD  +  +          +     +++ +   +++E+  +  
Sbjct: 170 VIIPRYDMSELVEKIGVSSDPLKTGEFKDALSPFHPLTEAERKVWEEILNQSFEQFIELI 229

Query: 183 TLDRDH-------------IMSASEACDWGVVDKV 204
             +RD              I +A +A   G++D++
Sbjct: 230 DTNRDTLDREQARKLATGQIYTARDARANGMIDEI 264


>gi|170289952|ref|YP_001736768.1| Short-chain alcohol dehydrogenase [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170174032|gb|ACB07085.1| Short-chain alcohol dehydrogenase [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 425

 Score = 49.9 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 68/166 (40%), Gaps = 17/166 (10%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPI 103
           +  +TG I       +  +L    AEN    + L IN+ GG   A  +I D +   K P+
Sbjct: 27  VTNITGYISPATVEQV--KLAVKTAENGYSALVLQINTFGGQSDATFSIIDLILASKVPV 84

Query: 104 STFCM---GQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
             +     GQA S G+ +L A +       P + I   QP  G++         ++ +  
Sbjct: 85  IGYVYPEGGQALSAGTYILMATDYA--AMSPYSTIGSAQPVVGYTP-----LNESKYLNA 137

Query: 161 IKRRLNEIYVKNCG--KTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
              ++   Y    G  ++  E+    ++ + M A EA   G++D V
Sbjct: 138 YATKM-RSYAAMHGRNQSAAELMVLSNK-NFM-ADEALKVGLIDSV 180


>gi|319644956|ref|ZP_07999189.1| YqeZ protein [Bacillus sp. BT1B_CT2]
 gi|317392765|gb|EFV73559.1| YqeZ protein [Bacillus sp. BT1B_CT2]
          Length = 439

 Score = 49.9 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 52/131 (39%), Gaps = 13/131 (9%)

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           +   K I L IN+PGG V A + + DT+     P++ +   +A S G+ L    +    +
Sbjct: 61  DMNAKHIILDINTPGGAVDAVLDMADTIHNSDIPVTAYVNRRALSAGAYLALNADDI--Y 118

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
             P  ++          G A+D +  +  + +++        K  G+  +      D D 
Sbjct: 119 MAPGGKMGAA-AIIDTQGNAADKKSESLWLAEMEDA-----AKKNGRDPKYALAMADADV 172

Query: 189 IMSASEACDWG 199
                +A + G
Sbjct: 173 -----DAKEVG 178


>gi|328949699|ref|YP_004367034.1| protein of unknown function DUF114 [Marinithermus hydrothermalis
           DSM 14884]
 gi|328450023|gb|AEB10924.1| protein of unknown function DUF114 [Marinithermus hydrothermalis
           DSM 14884]
          Length = 280

 Score = 49.5 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 66/179 (36%), Gaps = 26/179 (14%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
           + ++  I    +  +   L  +   +    I L +++PGG+V A   I + ++     ++
Sbjct: 60  IPLSRFINIDDSEQV---LRAIRMTDKDVPIDLVLHTPGGLVLAAEQIAEALKRHPAKVT 116

Query: 105 TFCMGQAASMGSLLLSAGEKGMR----FALPNARILLHQPSGGF-----SGQASDIERHA 155
            F    A S G+L+  A ++ +        P    L   P+        +    DIE   
Sbjct: 117 VFVPHYAMSGGTLIALAADEIVMDENAVLGPVDPQLGQYPAASILKVLETKDPKDIEDQT 176

Query: 156 --------QDIVKIKRRLNEIYVKNCG-KTYEEVEKTLDRDHI-----MSASEACDWGV 200
                   + + ++KR +  +     G +  EEV   L +        +S  EA   G+
Sbjct: 177 LILADVARKALDQVKRTVKGLLADKFGEEKAEEVAALLSQGTWTHDYPISVEEARAMGL 235


>gi|241889101|ref|ZP_04776405.1| putative signal peptide peptidase SppA [Gemella haemolysans ATCC
           10379]
 gi|241864350|gb|EER68728.1| putative signal peptide peptidase SppA [Gemella haemolysans ATCC
           10379]
          Length = 325

 Score = 49.5 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 62/193 (32%), Gaps = 34/193 (17%)

Query: 45  VFVTGQIEDHMATL-----ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           + + G+I   M        +  Q+   +     K I L +NSPGG V     +Y+ ++  
Sbjct: 70  ISIDGEINAEMTNTYSRGSVLNQIKEAKGNPNVKAILLSVNSPGGGVYETAELYNALKNS 129

Query: 100 KPPISTFCMGQAASMGSLLLSAGEK--------------GMRFALPNARILLHQPSGG-- 143
              +       AAS G  + +  +K               M +      +  H       
Sbjct: 130 GKDVYVSMKKTAASGGYYVSTPAKKIFVNTETTTGSLGVIMSYVSAQKFLNDHGIKQETI 189

Query: 144 -------FSGQASDI-----ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
                    G   D+     +   +   +   R  +   +    + +EV+K  D     +
Sbjct: 190 RSGEQKAVGGLTEDLPESTRKILQEQNKEAYERFVKAIAEGRHLSEDEVKKLADGRTY-T 248

Query: 192 ASEACDWGVVDKV 204
            ++A    + DKV
Sbjct: 249 GTQAVANKLADKV 261


>gi|119872893|ref|YP_930900.1| peptidase S49 [Pyrobaculum islandicum DSM 4184]
 gi|119674301|gb|ABL88557.1| peptidase S49 [Pyrobaculum islandicum DSM 4184]
          Length = 550

 Score = 49.5 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 71/199 (35%), Gaps = 42/199 (21%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
             + G         +   L  L   +    I L INSPGG V+    +Y T+  +     
Sbjct: 49  FVIGGPET----DKLVKALTELSQRDDVAGIVLVINSPGGTVSGTETLYTTLLGLNKTKY 104

Query: 105 TFCMGQAASMGSLLLSAGEKGMRFALPNAR----------------------ILLHQPSG 142
              +G  AS       A E+   +A P++                       I    P  
Sbjct: 105 AVIVGLGASGAYYTAVAAERI--YAAPSSWVGSIGVVAVIWPDLYLYDAADYIYTTGPLK 162

Query: 143 GFSGQASDIERHAQDIVKIKRRLNEIYVK-NCGKTYEEVEKT---LDRDHIMSASEACDW 198
            +     D+  +  D+ KI++   E  ++   G+    ++     L+   + +A EA   
Sbjct: 163 YYG---EDLHGYYDDVEKIRQNFVEAVLRGRAGR----IKADPAVLETAGLFTAEEALKL 215

Query: 199 GVVDK---VLMSRIDIEEK 214
           G+VDK   VL +  D+ E+
Sbjct: 216 GLVDKIGGVLDAARDMAEE 234


>gi|317051372|ref|YP_004112488.1| signal peptide peptidase SppA, 36K type [Desulfurispirillum indicum
           S5]
 gi|316946456|gb|ADU65932.1| signal peptide peptidase SppA, 36K type [Desulfurispirillum indicum
           S5]
          Length = 277

 Score = 49.5 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 61/158 (38%), Gaps = 33/158 (20%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           + +NSPGGVVT    +Y  ++    P+  F  G AAS G+L  + G    R    +  I 
Sbjct: 69  VRVNSPGGVVTPSQELYSLIRHYPKPVWAFHDGLAAS-GALFATIGAD--RIGTQSTTIT 125

Query: 137 LHQPSGGFSGQASDI--ERHAQDIV----KIKRRLN----------EIYVKNCGKTYEEV 180
                   S  A ++  +   ++I       K  L+           I  +  G +Y+E 
Sbjct: 126 GSIGVIIRSINARELYEKIGIEEITVKTGPFKNILSTNQPLGDDERRILEELIGDSYDEF 185

Query: 181 ------EKTLDRD--------HIMSASEACDWGVVDKV 204
                  + +D+          I S   A ++G+ D++
Sbjct: 186 VNAIASSRDMDKQLLIDIADGRIFSGLRAVEYGLADEI 223


>gi|217967156|ref|YP_002352662.1| protein of unknown function DUF107 [Dictyoglomus turgidum DSM 6724]
 gi|217336255|gb|ACK42048.1| protein of unknown function DUF107 [Dictyoglomus turgidum DSM 6724]
          Length = 423

 Score = 49.1 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 64/165 (38%), Gaps = 8/165 (4%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPI 103
           ++ + G IE  +A+ +      L+     K     I++ GG V A + I D +       
Sbjct: 27  VIPIKGTIELGLASFVER---SLKENPNAKAFIFEIDTFGGRVDAAIRIRDAILSTPNLT 83

Query: 104 STFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKR 163
             F   +A S G+L+  + EK      P+  I   +P        S ++   +   K ++
Sbjct: 84  IAFIKDRAWSAGALIALSCEKI--IISPSGSIGAAEPRPAEEKTISALKAEFESTAKKRQ 141

Query: 164 RLNEIYVKNCGKTYEEVEKTLDRDHIMS--ASEACDWGVVDKVLM 206
           R N           E +     +  I++  A EA  W + D++L 
Sbjct: 142 R-NPKIAAAMVDADEVIPGLKQKGKILTLYAEEAKKWKIADEILE 185


>gi|34419242|ref|NP_899255.1| ClpP [Vibrio phage KVP40]
 gi|34332923|gb|AAQ64078.1| ClpP [Vibrio phage KVP40]
          Length = 239

 Score = 49.1 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 6/141 (4%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFC-MGQAASMG 115
                 L  L   +    + L++N+PGG   A   I D +   K      C  G+  S G
Sbjct: 30  NDYEEMLQILHTASETDLVYLHLNTPGGNFAAACQICDAIMQSKAGAVIACAEGEVCSAG 89

Query: 116 SLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK 175
           +++  A         P A  + H  SGG  G+  D  + A+   +   R+  +  +    
Sbjct: 90  TMIFLACNGW--HVSPFATFMFHTSSGGQIGKMPDTLKQAKAHEEHLNRVCGLLYEPF-F 146

Query: 176 TYEEVEKTLDR--DHIMSASE 194
             +E+++ ++   D  ++  E
Sbjct: 147 DADEIDEIINHNQDLWLTPDE 167


>gi|147921090|ref|YP_685099.1| putative periplasmic serine protease [uncultured methanogenic
           archaeon RC-I]
 gi|110620495|emb|CAJ35773.1| putative periplasmic serine protease [uncultured methanogenic
           archaeon RC-I]
          Length = 318

 Score = 49.1 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 60/182 (32%), Gaps = 31/182 (17%)

Query: 51  IEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCM 108
           +    +  I   L   E +   K I L INSPGG   A   IY  +       PI     
Sbjct: 74  LGYASSNSIVKHLRKAEEDKSIKAIVLRINSPGGTPVAAQEIYRQINKTSQVKPIVVSMG 133

Query: 109 GQAASMGSLLLSAGEK------------GMRFALPNARILLHQPSGGFS----GQASDIE 152
             A S    + +   K            G+ +   N   L  +    +     G   D+ 
Sbjct: 134 DIATSAAYYISAPCTKIVANPDTFTGSIGVIWTFENKSGLYEKEGIQYYVAKSGPYKDVG 193

Query: 153 RHAQDIV-----KIKRRLNEIYVKN-----CGK--TYEEVEKTLDRDHIMSASEACDWGV 200
              + +       +   +N+ Y +       G+    EEV++  D     +  EA D G+
Sbjct: 194 ADWRGLNENEKAYVNNIINQSYSRFVDAVASGRHMDREEVQRLADGRVY-TGYEARDLGL 252

Query: 201 VD 202
           VD
Sbjct: 253 VD 254


>gi|52786465|ref|YP_092294.1| YqeZ [Bacillus licheniformis ATCC 14580]
 gi|163119554|ref|YP_079877.2| intermembrane protease YqeZ [Bacillus licheniformis ATCC 14580]
 gi|52348967|gb|AAU41601.1| YqeZ [Bacillus licheniformis ATCC 14580]
 gi|145903062|gb|AAU24239.2| intermembrane protease YqeZ [Bacillus licheniformis ATCC 14580]
          Length = 439

 Score = 49.1 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 13/127 (10%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132
           K I L IN+PGG V A + + DT+     P++ +   +A S G+ L    +    +  P 
Sbjct: 65  KHIILDINTPGGAVDAVLDMADTIHNSDIPVTAYVNRRALSAGAYLALNADDI--YMAPG 122

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
            ++          G A+D +  +  + +++        K  G+  +      D D     
Sbjct: 123 GKMGAA-AIIDTQGNAADKKSESLWLAEMEDA-----AKKNGRDPKYALAMADADV---- 172

Query: 193 SEACDWG 199
            +A + G
Sbjct: 173 -DAKEVG 178


>gi|206890313|ref|YP_002249833.1| periplasmic serine protease [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206742251|gb|ACI21308.1| periplasmic serine protease [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 280

 Score = 49.1 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 72/181 (39%), Gaps = 30/181 (16%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
             +   I+ H +  +   L  +   +    I L +++PGG+  A   I   +   K  ++
Sbjct: 61  FPIMRYIDIHDSEEV---LRAIHLTDDDTPIDLVVHTPGGLAIAATQIARALSRQKAKVT 117

Query: 105 TFCMGQAASMGSLLLSAGEKGMRF----ALPNARILLHQPSGGF-----SGQASDIE--- 152
            F    A S G+L+  + ++ +        P    +  QP+            SDI+   
Sbjct: 118 VFVPHYAMSGGTLIALSADEIVMCEHAVLGPLDPQIGQQPAVSVLSVLQKKPLSDIDDNT 177

Query: 153 -RHAQD----IVKIKRRLNEIYVKNCGKTYEEVEKTLDR--------DHIMSASEACDWG 199
              A      I ++K+ + EI   N  ++ E+ E+  ++        D+ +SA EA + G
Sbjct: 178 LILADQAEKAIRQMKQTIIEILSHN--QSSEKAEEIAEKLVSGKWTHDYPISAEEAKELG 235

Query: 200 V 200
           +
Sbjct: 236 L 236


>gi|258592126|emb|CBE68431.1| Signal peptide peptidase SppA, 36K type precursor [NC10 bacterium
           'Dutch sediment']
          Length = 290

 Score = 49.1 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 47/199 (23%), Positives = 72/199 (36%), Gaps = 31/199 (15%)

Query: 36  YSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD- 94
           + RL   ++  +T       +  I  QL         K I L INSPGG V     I++ 
Sbjct: 29  WERLGGSKVALITVDGVILDSKEIIEQLEKYRTNPSVKAIVLRINSPGGGVAPSQEIHEE 88

Query: 95  ---TMQFIKPPISTFCMGQAASMGSLLLS------------AGEKGMRFALPNARILLHQ 139
              T Q  K PI       AAS G  + S             G  G+   +PN   L+ +
Sbjct: 89  VLKTRQTDKKPIVASMGSVAASGGYYIASATDLIVANPGTITGSIGVVLQVPNISGLMQK 148

Query: 140 PSGGF----SGQASDIERHAQDIVKI-KRRLNEIYVKNCGKTYEEVE--KTLDR------ 186
                    SG   D+    +++    ++ L  +     G+  + V   + +DR      
Sbjct: 149 IGVKSVVVKSGLHKDLASPTREMTDAERQILQGMLDDVHGQFIDAVAMGRRIDRKKVETM 208

Query: 187 --DHIMSASEACDWGVVDK 203
               I S  EA   G+VD+
Sbjct: 209 ADGRIFSGREAQSLGLVDQ 227


>gi|154500232|ref|ZP_02038270.1| hypothetical protein BACCAP_03896 [Bacteroides capillosus ATCC
           29799]
 gi|150270964|gb|EDM98238.1| hypothetical protein BACCAP_03896 [Bacteroides capillosus ATCC
           29799]
          Length = 245

 Score = 49.1 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 63/156 (40%), Gaps = 12/156 (7%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +   L  +E  +    + + +N+ GG + AG+ I + +  ++ P  +  +G   S+G 
Sbjct: 67  EHVMPLLAAIEESSEVDGVLILLNTVGGDIEAGLGIAELIASMRKPTVSLVLGGGHSIGV 126

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            L  + +    F  P+A + +H       G    + +      +I+ R+ +   KN    
Sbjct: 127 PLAVSAKT--SFIAPSAAMTIHPVRLN--GLVIGVPQTFYYFERIQDRIIQFVTKNSHVD 182

Query: 177 YEEVEKTL--------DRDHIMSASEACDWGVVDKV 204
            E   + +        D   ++   EA   G++D++
Sbjct: 183 RETFTRMMLQTGELAADVGSVIYGEEAVKIGLIDRI 218


>gi|317496118|ref|ZP_07954478.1| signal peptide peptidase SppA [Gemella moribillum M424]
 gi|316913693|gb|EFV35179.1| signal peptide peptidase SppA [Gemella moribillum M424]
          Length = 323

 Score = 48.7 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 66/193 (34%), Gaps = 34/193 (17%)

Query: 45  VFVTGQIEDHMATL-----ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           + + G+I   M        I  Q+   ++ +  K I L +N+PGG V     +Y+ ++  
Sbjct: 68  ISIEGEIGAEMTNTYSRASIINQIKEAKSNSNVKAILLSVNTPGGGVYETAELYNELKNS 127

Query: 100 KPPISTFCMGQAASMGSLLLSAGEK--------------GMRFALPNARILLHQPSGGF- 144
              +      QA S G  +  A +K               M F      +  H       
Sbjct: 128 GKDVYVSMKKQATSGGYYVSMAAKKIFANTETTTGSLGVIMSFVSAQKYLNDHGIKQETI 187

Query: 145 --------SGQASDI-----ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
                    G   D+     + + +   +   R  +   +    + +EV K  D     +
Sbjct: 188 RSGEQKAIGGLLEDLPESTRKIYQEQNKEAYDRFVKAIAQGRNMSEDEVRKLADGRTY-T 246

Query: 192 ASEACDWGVVDKV 204
            ++A +  ++DK+
Sbjct: 247 GTQAVENKLIDKI 259


>gi|147821750|emb|CAN70440.1| hypothetical protein VITISV_011901 [Vitis vinifera]
          Length = 278

 Score = 48.7 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 22/39 (56%)

Query: 169 YVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
              + G+++E++ +  DR   +S  EA ++   D V+++
Sbjct: 221 LSYHIGQSFEKINQNTDRGFFISTKEAKEYRFTDGVILN 259


>gi|255580841|ref|XP_002531240.1| conserved hypothetical protein [Ricinus communis]
 gi|223529159|gb|EEF31137.1| conserved hypothetical protein [Ricinus communis]
          Length = 85

 Score = 48.7 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 127 RFALPNARILLHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
            F     R+++HQP +G +  Q  +    A++++K++  L  IY +  G T
Sbjct: 1   MFLFDKKRVMIHQPIAGFYEAQIEEFVLEAEELLKLREILTRIYAQRTGIT 51


>gi|297741666|emb|CBI32798.3| unnamed protein product [Vitis vinifera]
          Length = 70

 Score = 48.7 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 22/39 (56%)

Query: 169 YVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
              + G+++E++ +  DR   +S  EA ++   D V+++
Sbjct: 13  LSYHIGQSFEKINQNTDRGFFISTKEAKEYRFTDGVILN 51


>gi|167629015|ref|YP_001679514.1| signal peptide peptidase sppa, 36k type [Heliobacterium
           modesticaldum Ice1]
 gi|167591755|gb|ABZ83503.1| signal peptide peptidase sppa, 36k type [Heliobacterium
           modesticaldum Ice1]
          Length = 310

 Score = 48.7 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 67/177 (37%), Gaps = 32/177 (18%)

Query: 58  LICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAASM 114
            +   L  L+ +   K + L INSPGG   A   I    D ++     +       AAS 
Sbjct: 70  QVLEALRRLQQDKQIKAVVLRINSPGGTSAASQEIGREVDRLRESGKVVVASMGDVAASG 129

Query: 115 GSLLLSAGEK------------GMRFALPNARILL----HQPSGGFSGQASDIERHAQDI 158
           G  + +  +K            G+   L N   L     ++P+   SG   DI   A+++
Sbjct: 130 GYWVAARADKIVANAATTTGSIGVILDLANLTELYQKIGYRPNVIKSGPYKDIASSAREM 189

Query: 159 VKIKRRLNEIYVKNCGK------------TYEEVEKTLDRDHIMSASEACDWGVVDK 203
              +R + +  V +  +             +E+V    D   + +  +A + G+VD+
Sbjct: 190 TPEERAILQGMVDDIYQQFIDVVAEGRHMPHEQVRALAD-GRVFTGRQAKELGLVDE 245


>gi|167040210|ref|YP_001663195.1| hypothetical protein Teth514_1572 [Thermoanaerobacter sp. X514]
 gi|300914294|ref|ZP_07131610.1| protein of unknown function DUF107 [Thermoanaerobacter sp. X561]
 gi|307724470|ref|YP_003904221.1| hypothetical protein Thet_1330 [Thermoanaerobacter sp. X513]
 gi|166854450|gb|ABY92859.1| protein of unknown function DUF107 [Thermoanaerobacter sp. X514]
 gi|300889229|gb|EFK84375.1| protein of unknown function DUF107 [Thermoanaerobacter sp. X561]
 gi|307581531|gb|ADN54930.1| protein of unknown function DUF107 [Thermoanaerobacter sp. X513]
          Length = 436

 Score = 48.7 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 53/145 (36%), Gaps = 25/145 (17%)

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           IN+PGG+V A + I  T+     P + +   QA S G L+  + E             L+
Sbjct: 71  INTPGGLVDAAVEISQTILNSPVPTAAYVNSQATSAGVLIAISCEN------------LY 118

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH---------- 188
              G   G A  + +  + I   + +L     +  G+    V    D D           
Sbjct: 119 MAPGSTIGAAETVPKEEKTISYWRSKLEGA-AERRGRDPRIVAAMADADVEIEGLKERGK 177

Query: 189 --IMSASEACDWGVVDKVLMSRIDI 211
              ++  +A +  + D +   R ++
Sbjct: 178 ILSLTDKKALELKLADGIAADRKEL 202


>gi|126459873|ref|YP_001056151.1| peptidase S49 [Pyrobaculum calidifontis JCM 11548]
 gi|126249594|gb|ABO08685.1| peptidase S49 [Pyrobaculum calidifontis JCM 11548]
          Length = 522

 Score = 48.7 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 67/172 (38%), Gaps = 29/172 (16%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMG 115
           A  +  +L+ L        + L INSPGG V+   A+Y T++ +  P      G AAS  
Sbjct: 49  AGALAQRLVELSQRGDVAGVVLVINSPGGTVSDTEALYATLRGLGKPKYAVVYGLAASGA 108

Query: 116 SLLLSAGEKGMRFALPNARI---------------------LLHQPSGGFSGQASDIERH 154
             + +A +K   +A P++ +                     +       + G   D+   
Sbjct: 109 YYVAAAADKI--YATPSSWVGSIGVIAVIWPDEYLYDAPDYVYTTGPLKYYGM--DLTSF 164

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH--IMSASEACDWGVVDKV 204
              + +++    +   +  G+         + +   + +AS+A + G+VDK+
Sbjct: 165 YNAVEEVRNNFVKAVAE--GRRGRLRVNATELETAALYTASQALEMGLVDKI 214


>gi|325279621|ref|YP_004252163.1| peptidase S49 [Odoribacter splanchnicus DSM 20712]
 gi|324311430|gb|ADY31983.1| peptidase S49 [Odoribacter splanchnicus DSM 20712]
          Length = 467

 Score = 48.3 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 64/184 (34%), Gaps = 31/184 (16%)

Query: 58  LICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSL 117
            +  +   L  +     I +++N+ GG+V    ++   +   + P+  F    AAS G+L
Sbjct: 47  RLARKSFDLAGQEKADYILIHMNTYGGMVVYADSLRSMILNSRKPVWVFIDNNAASAGAL 106

Query: 118 LLSAGEKGMRF----------------ALPNAR--ILLHQPSGGFSGQASD-IERHAQDI 158
           +  A +K                    A+P+     +          Q  D + +    +
Sbjct: 107 ISIACDKIYMREGANIGAATVVNQTGEAMPDKYQSYMRSMIRSTAEAQGRDTLVQGRDTV 166

Query: 159 VKIKRR--LNEIYVKNC----GKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212
            + KR   + E  V       G T         R    +A EA  +G  D +  S  ++ 
Sbjct: 167 YRWKRNPHIAEAMVDQSIYIQGIT------DSGRVVTFTAREAMKYGFCDGMAESVEEVL 220

Query: 213 EKSK 216
           +K +
Sbjct: 221 KKEQ 224


>gi|327401777|ref|YP_004342616.1| hypothetical protein Arcve_1908 [Archaeoglobus veneficus SNP6]
 gi|327317285|gb|AEA47901.1| protein of unknown function DUF107 [Archaeoglobus veneficus SNP6]
          Length = 427

 Score = 48.3 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 72/174 (41%), Gaps = 19/174 (10%)

Query: 47  VTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTF 106
           + G I +  A  + +    L  E     + + I++PGG+VT+  +I   +     P+ T+
Sbjct: 33  IKGDINEGTAIQV-SNAFKLAEEVNADAVLIVIDTPGGLVTSMKSIVTEILQSDIPVITY 91

Query: 107 C---MGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI-ERHAQDIVKIK 162
                  +AS GS +L +G         +   + +   G   G A+ I    A +   I 
Sbjct: 92  VHPPGAFSASAGSFILISG---------HIAAMSN---GTSVGAATPITPIGAAENKTIN 139

Query: 163 --RRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
                 +   +  G+  +  E+ +     ++A EA + GVVD +  S+ ++  K
Sbjct: 140 YLANYAKSIAEVRGRPVDIAERFVTEGLSLTAREAYEKGVVDVIADSKGELFSK 193


>gi|148657205|ref|YP_001277410.1| hypothetical protein RoseRS_3097 [Roseiflexus sp. RS-1]
 gi|148569315|gb|ABQ91460.1| protein of unknown function DUF114 [Roseiflexus sp. RS-1]
          Length = 282

 Score = 48.3 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 61/163 (37%), Gaps = 23/163 (14%)

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           A L  ++  +    I L +++PGG+V A   I   ++     ++ F    A S G+L+  
Sbjct: 72  AVLRAIKMTDRDVPIDLVLHTPGGLVLAAEQIASALRKHPAKVTVFVPHYAMSGGTLIAL 131

Query: 121 AGEKGMR----FALPNARILLHQPSGGF-----SGQASDI--------ERHAQDIVKIKR 163
           A ++ +        P    L  QP+            S+I        +   + I ++K 
Sbjct: 132 AADEIVMDENAVLGPVDPQLGQQPAASILKVLERKPISEIDDETLIMADIAEKAIRQVKA 191

Query: 164 RLNEIYVKNCG-KTYEEVEKTLDRDHI-----MSASEACDWGV 200
            + E+     G +  E +   L          +S  EA + G+
Sbjct: 192 TVIELLADRMGAEPAEHIATMLATGVWTHDYPISVREARELGL 234


>gi|329768602|ref|ZP_08260088.1| hypothetical protein HMPREF0428_01785 [Gemella haemolysans M341]
 gi|328836476|gb|EGF86137.1| hypothetical protein HMPREF0428_01785 [Gemella haemolysans M341]
          Length = 327

 Score = 48.3 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 62/193 (32%), Gaps = 34/193 (17%)

Query: 45  VFVTGQIEDHMATL-----ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           + + G+I   M        +  Q+   +     K I L +NSPGG V     +Y+ ++  
Sbjct: 72  ISIEGEINSEMTNTYSRGSVLNQIKEAKGNPNVKAILLSVNSPGGGVYETAELYNALKNS 131

Query: 100 KPPISTFCMGQAASMGSLLLSAGEK--------------GMRFALPNARILLHQPSGG-- 143
              +       AAS G  + +  +K               M +      +  H       
Sbjct: 132 GKDVYVSMKKTAASGGYYVSTPAKKIFVNTETTTGSLGVIMSYVSAQKFLNDHGIKQETV 191

Query: 144 -------FSGQASDI-----ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
                    G   D+     +   +   +   R  +   +    + +EV+K  D     +
Sbjct: 192 RSGDQKAVGGLTEDLPESTRKILQEQNKEAYERFVKAIAEGRHLSEDEVKKLADGRTY-T 250

Query: 192 ASEACDWGVVDKV 204
            ++A    + DK+
Sbjct: 251 GTQAVANKLADKI 263


>gi|296328845|ref|ZP_06871356.1| S49 family protease IV [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
 gi|296153966|gb|EFG94773.1| S49 family protease IV [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
          Length = 551

 Score = 48.3 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 73/195 (37%), Gaps = 36/195 (18%)

Query: 44  IVFVTGQIEDHMA-------TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           I+ + G+I+   +         +  +L  LE     K + L INSPGG       IY  +
Sbjct: 287 IINLEGEIDTRESKESIINYDNVVEKLDELEDIKNLKGLVLRINSPGGSALESEKIYQKL 346

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEK------------GMRFALPNARILLHQPSGGF 144
           + +  PI        AS G  + + G++            G+    P     +++     
Sbjct: 347 KKLDIPIYISMGDLCASGGYYIATVGKRLFANPVTLTGSIGVVILYPEFTETINKLKVNM 406

Query: 145 SGQAS----DIERHAQDI-----VKIKRRLNEIYVKNC-------GKTYEEVEKTLDRDH 188
            G +     DI   +  +      KI   +NE+Y +           + E++EK      
Sbjct: 407 EGFSKGKGFDIFDVSSKLSEESKEKIIYSMNEVYSEFKEHVMEARNISEEDLEKIAGGRV 466

Query: 189 IMSASEACDWGVVDK 203
            +  S+A + G+VD+
Sbjct: 467 WL-GSQAKENGLVDE 480


>gi|256026400|ref|ZP_05440234.1| protease IV [Fusobacterium sp. D11]
          Length = 334

 Score = 48.3 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 73/195 (37%), Gaps = 36/195 (18%)

Query: 44  IVFVTGQIEDHMA-------TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           I+ + G+I+   +         +  +L  LE     K + L INSPGG       IY  +
Sbjct: 70  IINLEGEIDTRESKESIINYDNVVEKLDELEDIKNLKGLVLRINSPGGSALESEKIYQKL 129

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEK------------GMRFALPNARILLHQPSGGF 144
           + ++ PI        AS G  + + G+K            G+    P     +++     
Sbjct: 130 KKLEIPIYVSMGDLCASGGYYIATVGKKLFANPVTLTGSIGVVVLYPEFTETINKLKVNM 189

Query: 145 SGQAS----DIERHAQDI-----VKIKRRLNEIYVKNC-------GKTYEEVEKTLDRDH 188
            G +     DI      +      KI   +NE+Y +           + E++EK      
Sbjct: 190 EGFSKGKGFDIFDVFSKLSEESKEKIIYSMNEVYSEFKEHVIQARNISEEDLEKIAGGRV 249

Query: 189 IMSASEACDWGVVDK 203
            +  S+A + G+VD+
Sbjct: 250 WL-GSQAKENGLVDE 263


>gi|309388926|gb|ADO76806.1| protein of unknown function DUF107 [Halanaerobium praevalens DSM
           2228]
          Length = 427

 Score = 48.3 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 74/181 (40%), Gaps = 26/181 (14%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           R + + G+I +     I   L   E +     I + INS GG V   + I D++   +  
Sbjct: 28  RHLNLEGEINNAQYKFIEDNLEQAEKDGVDLFI-IEINSLGGFVDPALKIRDSIFAAEIE 86

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIK 162
           + TF  G+A S  +L+  AG++   +  P+A I          G A    +  + I  ++
Sbjct: 87  VITFVKGRAWSAAALIALAGDEL--YISPSASI----------GAAETRPKEEKYISALR 134

Query: 163 RRLNEIYVKNCGKTYEEVEKTLDR----------DHI--MSASEACDWGVVDKVLMSRID 210
           +    +  ++  K  E  E  +D           D +  ++A EA   G+ D  L S  +
Sbjct: 135 KEFA-VTAEHRNKNPEIAEAMVDSSLEIEGIIGVDKLLTLTAKEAITTGIADYRLSSLAE 193

Query: 211 I 211
           I
Sbjct: 194 I 194


>gi|206889350|ref|YP_002249562.1| signal peptide peptidase SppA, 36K type [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741288|gb|ACI20345.1| signal peptide peptidase SppA, 36K type [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 285

 Score = 48.3 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 63/175 (36%), Gaps = 31/175 (17%)

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI--KPPISTFCMGQAASMGSL 117
             ++     +   K I L ++SPGG V     IY+ ++      P+       AAS G  
Sbjct: 51  IDEIKQYRKDPSIKAIVLRVDSPGGAVVPSQEIYEEIKRTIKSKPVVVSMGSIAASGGYY 110

Query: 118 LLSAGEK------------GMRFALPNARILLHQPSGGF----SGQASDI---------- 151
           +     K            G+   +PN + LL +         SG+  DI          
Sbjct: 111 ISCPATKIIANPGTLTGSIGVLIEIPNIKGLLDKIGVKAEVIKSGKYKDITSPFKPLQNE 170

Query: 152 --ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             E   +    +  +  +   +      E+++K  D   + +  +A + G+VD++
Sbjct: 171 EKEILQKLTNDVHEQFIKAVAEGRKVPVEDIKKIAD-GRVFTGLKAKELGLVDEI 224


>gi|294785545|ref|ZP_06750833.1| protease IV [Fusobacterium sp. 3_1_27]
 gi|294487259|gb|EFG34621.1| protease IV [Fusobacterium sp. 3_1_27]
          Length = 551

 Score = 48.3 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 65/175 (37%), Gaps = 29/175 (16%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  +L  LE     K + L INSPGG       IY  ++ ++ PI        AS G 
Sbjct: 307 DNVVEKLDELEDIKNLKGLVLRINSPGGSALESEKIYQKLKKLEVPIYISMGDLCASGGY 366

Query: 117 LLLSAGEK------------GMRFALPNARILLHQPSGGFSGQAS----DIERHAQDI-- 158
            + + G+K            G+    P     +++      G +     DI      +  
Sbjct: 367 YIATVGKKLFANPVTLTGSIGVVVLYPEFTETINKLKVNMEGFSKGKGFDIFDVFSKLSE 426

Query: 159 ---VKIKRRLNEIYVKNC-------GKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
               KI   +NE+Y +           + E++EK       +  ++A + G+VD+
Sbjct: 427 ESKEKIIYSMNEVYSEFKEHVIQARNISEEDLEKIAGGRVWL-GNQAKENGLVDE 480


>gi|237741816|ref|ZP_04572297.1| protease IV [Fusobacterium sp. 4_1_13]
 gi|229429464|gb|EEO39676.1| protease IV [Fusobacterium sp. 4_1_13]
          Length = 551

 Score = 47.9 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 65/175 (37%), Gaps = 29/175 (16%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  +L  LE     K + L INSPGG       IY  ++ ++ PI        AS G 
Sbjct: 307 DNVVEKLDELEDIKNLKGLVLRINSPGGSALESEKIYQKLKKLEVPIYISMGDLCASGGY 366

Query: 117 LLLSAGEK------------GMRFALPNARILLHQPSGGFSGQAS----DIERHAQDI-- 158
            + + G+K            G+    P     +++      G +     DI      +  
Sbjct: 367 YIATVGKKLFANPVTLTGSIGVVVLYPEFTETINKLKVNMEGFSKGKGFDIFDVFSKLSE 426

Query: 159 ---VKIKRRLNEIYVKNC-------GKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
               KI   +NE+Y +           + E++EK       +  ++A + G+VD+
Sbjct: 427 ESKEKIIYSMNEVYSEFKEHVIQARNISEEDLEKIAGGRVWL-GNQAKENGLVDE 480


>gi|294338123|emb|CBJ93961.1| Probable phage ClpP protease [Campylobacter phage CP220]
          Length = 295

 Score = 47.9 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 53/146 (36%), Gaps = 15/146 (10%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQ-FIKPPISTFCMGQAASMGSLLLSAGEK 124
           L        I ++I S GG         + ++      ++T       S G++L   G  
Sbjct: 60  LNDAAEGDSIQIFIASVGGFADELNRFTNIIRTKFYGNVTTVLNPFGYSCGAMLFLIG-- 117

Query: 125 GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK-----IKRRLNEIYVKNCGKTYEE 179
             R    N+ I+ H  S G SG+ SD++       K     +K  LN    K       E
Sbjct: 118 NSRVIYENSSIMFHSVSFGVSGKHSDVKTQFDFSNKYWNEYMKSLLNPYLTKK------E 171

Query: 180 VEKTLDR-DHIMSASEACDWGVVDKV 204
           +E  +D  +    A E C  G+   +
Sbjct: 172 IELLIDGVEFWFDAYEMCKRGIATHI 197


>gi|119503764|ref|ZP_01625846.1| signal peptide peptidase SppA, 67K type [marine gamma
           proteobacterium HTCC2080]
 gi|119460272|gb|EAW41365.1| signal peptide peptidase SppA, 67K type [marine gamma
           proteobacterium HTCC2080]
          Length = 609

 Score = 47.9 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 62/179 (34%), Gaps = 31/179 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM---QFIKPPISTFCMGQAA 112
           A  +  Q+     +   K I   +NSPGG + A   + D +   +     +       AA
Sbjct: 347 ANGVVKQIRKAHEDEDTKAIVFRVNSPGGSIIASEMMRDELLAAKRKGIKVIVSMGDYAA 406

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSG------------QA 148
           S G  + +             G  G+  ALP     +      F G            QA
Sbjct: 407 SGGVYISTPADYIFAEPTTITGSIGVAIALPTLENAMDYIGVNFDGVVTSKHGGWDPTQA 466

Query: 149 --SDIE-RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
              D++   A        R      ++  +TY++++        + A+ A D G+VD++
Sbjct: 467 IDDDLDKIFASWGSAAYDRFINFVAESRSQTYDDIKAVAGGRVWI-ATSAKDIGLVDEI 524


>gi|332180395|gb|AEE16083.1| signal peptide peptidase SppA, 36K type [Treponema brennaborense
           DSM 12168]
          Length = 370

 Score = 47.9 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 64/177 (36%), Gaps = 44/177 (24%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK----PPISTFCMGQAASMGSLLLSA 121
           L A++    I LYI+SPGG V     +Y  +   K     P+  +    AAS G  +  A
Sbjct: 119 LAADSKNVGILLYIDSPGGGVYQSDEVYLELVKYKETTGNPVLAYLGPLAASGGYYIACA 178

Query: 122 GEKGMRFALPNARILLHQPSGGFSGQASD---------IERHAQDIVKIKRRL------- 165
            +    + + N   L     G  SGQ+ D         I+ +     + K  L       
Sbjct: 179 AD----YLIANRNTLTGSI-GVISGQSVDLSALMDKYGIKMNTFTAGRNKDMLSINRPLT 233

Query: 166 ------------------NEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
                               I  ++ G   E+V    D     +A++A + G++D++
Sbjct: 234 EEQRSIMQSIADECYDQFTGIVAESRGLDIEQVTALADGRVY-TAAQALEHGLIDEI 289


>gi|304396127|ref|ZP_07378009.1| signal peptide peptidase SppA, 67K type [Pantoea sp. aB]
 gi|304356496|gb|EFM20861.1| signal peptide peptidase SppA, 67K type [Pantoea sp. aB]
          Length = 620

 Score = 47.9 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 60/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM---QFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA  AI + +   Q    PI     G AA
Sbjct: 351 GDTTAAQIRDARLDPKIKAIILRVNSPGGSVTASEAIREELAAAQAAGKPIVVSMGGMAA 410

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DI----- 151
           S G  + +             G  G+   +      L        G A+    DI     
Sbjct: 411 SGGYWISTPASYIVANPSTLTGSIGIFGVINTLENSLDSIGVHTDGVATSPLADISTTKA 470

Query: 152 ------ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
                 +     I    R    +  K+  KT E+++         + S+A   G+VD
Sbjct: 471 LPAEVQQMMQLTIENGYRNFVGLVAKSRHKTPEQIDAIAQGHVW-TGSDAKANGLVD 526


>gi|311069140|ref|YP_003974063.1| putative membrane bound hydrolase [Bacillus atrophaeus 1942]
 gi|310869657|gb|ADP33132.1| putative membrane bound hydrolase [Bacillus atrophaeus 1942]
          Length = 438

 Score = 47.9 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 54/139 (38%), Gaps = 13/139 (9%)

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           A+      +N  K I L IN+PGG V + + I DT+     P++ +   +A S G+ +  
Sbjct: 52  ARAFQEAEDNHAKHIILNINTPGGAVESALEIADTINHADIPVTAYVNKRALSAGAYIAL 111

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
             +    +  P  ++           QA    + A+ +      L +   KN G+  +  
Sbjct: 112 QADDL--YMAPGGKMGAAAIIDMNGNQAD---KKAESL--WLAELEDAAAKN-GRDPKYA 163

Query: 181 EKTLDRDHIMSASEACDWG 199
               D D      +A + G
Sbjct: 164 RAMADADV-----DAKEVG 177


>gi|209966605|ref|YP_002299520.1| hypothetical protein RC1_3348 [Rhodospirillum centenum SW]
 gi|209960071|gb|ACJ00708.1| conserved hypothetical protein [Rhodospirillum centenum SW]
          Length = 204

 Score = 47.9 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 15/130 (11%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM---QFIK 100
           +V + G I   +     A +   +A  P + + L +NSPGG  +AG A+ D +   +   
Sbjct: 43  VVRIDGIITPELGDRFAAVM---DALPPGRPLLLELNSPGGYTSAGYAMIDRLLAERDRG 99

Query: 101 PPISTFCMG--QAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
             I+T   G     SM   L  AG    R+A  +A  ++H P G +SG  +      +  
Sbjct: 100 RRIATRVKGGENCESMCVGLFLAGRP--RYASADAVFMVHAPRGLYSGTVT-----VKST 152

Query: 159 VKIKRRLNEI 168
            ++  RL  +
Sbjct: 153 GRMIERLVGL 162


>gi|289764414|ref|ZP_06523792.1| protease IV [Fusobacterium sp. D11]
 gi|289715969|gb|EFD79981.1| protease IV [Fusobacterium sp. D11]
          Length = 306

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 73/195 (37%), Gaps = 36/195 (18%)

Query: 44  IVFVTGQIEDHMA-------TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           I+ + G+I+   +         +  +L  LE     K + L INSPGG       IY  +
Sbjct: 42  IINLEGEIDTRESKESIINYDNVVEKLDELEDIKNLKGLVLRINSPGGSALESEKIYQKL 101

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEK------------GMRFALPNARILLHQPSGGF 144
           + ++ PI        AS G  + + G+K            G+    P     +++     
Sbjct: 102 KKLEIPIYVSMGDLCASGGYYIATVGKKLFANPVTLTGSIGVVVLYPEFTETINKLKVNM 161

Query: 145 SGQAS----DIERHAQDI-----VKIKRRLNEIYVKNC-------GKTYEEVEKTLDRDH 188
            G +     DI      +      KI   +NE+Y +           + E++EK      
Sbjct: 162 EGFSKGKGFDIFDVFSKLSEESKEKIIYSMNEVYSEFKEHVIQARNISEEDLEKIAGGRV 221

Query: 189 IMSASEACDWGVVDK 203
            +  S+A + G+VD+
Sbjct: 222 WL-GSQAKENGLVDE 235


>gi|291276786|ref|YP_003516558.1| protease [Helicobacter mustelae 12198]
 gi|290963980|emb|CBG39819.1| protease [Helicobacter mustelae 12198]
          Length = 286

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 76/193 (39%), Gaps = 39/193 (20%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ--FIKPP 102
           +++ G I D  +  I  Q+  ++A    K   L INSPGG V+A + I D ++    + P
Sbjct: 49  IYLHGPIIDSTS--IYEQIKKIKANPNIKGALLLINSPGGAVSASVEISDMIRELNQRIP 106

Query: 103 ISTFCMGQAAS------------MGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQA-- 148
           +  +  G  AS              +     G  G+ F+  N + L+ +      G +  
Sbjct: 107 VVAYVQGVMASGSYYGGMYSKQIFANRGALIGSIGVIFSSMNIQNLMQKIGVSQQGVSAG 166

Query: 149 ------SDIERHA-QDIVKIKRRLNEIYVKNCGKTYEEV--EKTLDRDHI--------MS 191
                 + + +   ++   IK  + E Y        ++V   + LD+ +          +
Sbjct: 167 AYKEVGTPLRKWTPEEYAYIKNLIQEEYQMF----IDDVSDARKLDKHNYKSFAEGKIFT 222

Query: 192 ASEACDWGVVDKV 204
           A  A   G++D++
Sbjct: 223 AKNAQKLGLIDEI 235


>gi|183219875|ref|YP_001837871.1| peptidase PfaP [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|189910003|ref|YP_001961558.1| periplasmic serine protease [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167774679|gb|ABZ92980.1| Periplasmic serine protease [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167778297|gb|ABZ96595.1| Peptidase PfaP (Periplasmic flagella-associated protein;
           PF-associated peptidase) [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 321

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 72/199 (36%), Gaps = 37/199 (18%)

Query: 51  IEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCM 108
            +   A  +  QL  L+ +   K I + INSPGG V A   I++ +  ++    I     
Sbjct: 67  FDSTGADTVLRQLRELDEDTNVKGILIEINSPGGTVAASQEIFNELLHLRKSKKIVVSMK 126

Query: 109 GQAASMGSLLLS------------AGEKGMRFALPNARILLHQ----PSGGFSGQASDI- 151
             AAS G  + +             G  G+    PN + LL +         +G+  D+ 
Sbjct: 127 DVAASGGYYIAAASDYIFAENGTITGSIGVISFAPNVKGLLDRYGVGVRTYKAGKYKDMY 186

Query: 152 -----------ERHAQDIVKIKRRLNEIYVK---NCGKTYEEVEKTLDRDHIMSASEACD 197
                      +   + +    R+  E   K      K+ EE+ +      I S  +A  
Sbjct: 187 SPFRDSTNEEDDMIGKQLQDTYRKFVEDVAKGRNKTVKSIEELAE----GKIYSGEDAFR 242

Query: 198 WGVVDKVLMSRIDIEEKSK 216
             +VD +   R   ++ S+
Sbjct: 243 NKLVDDIGGRREAHKKLSE 261


>gi|19704208|ref|NP_603770.1| protease IV [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
 gi|19714432|gb|AAL95069.1| Protease IV [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
          Length = 494

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 73/195 (37%), Gaps = 36/195 (18%)

Query: 44  IVFVTGQIEDHMA-------TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           I+ + G+I+   +         +  +L  LE     K + L INSPGG       IY  +
Sbjct: 230 IINLEGEIDTRESKESIINYDNVVEKLDELEDIKNLKGLVLRINSPGGSALESEKIYQKL 289

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEK------------GMRFALPNARILLHQPSGGF 144
           + +  PI        AS G  + + G++            G+    P     +++     
Sbjct: 290 KKLDIPIYISMGDLCASGGYYIATVGKRLFANPVTLTGSIGVVILYPEFTETINKLKVNM 349

Query: 145 SGQAS----DIERHAQDI-----VKIKRRLNEIYVKNC-------GKTYEEVEKTLDRDH 188
            G +     DI   +  +      KI   +NE+Y +           + E++EK      
Sbjct: 350 EGFSKGKGFDIFDVSSKLSEESKEKIIYSMNEVYSEFKEHVMEARNISEEDLEKIAGGRV 409

Query: 189 IMSASEACDWGVVDK 203
            +  S+A + G+VD+
Sbjct: 410 WL-GSQAKENGLVDE 423


>gi|283785012|ref|YP_003364877.1| protease IV [Citrobacter rodentium ICC168]
 gi|282948466|emb|CBG88055.1| protease IV [Citrobacter rodentium ICC168]
          Length = 618

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 58/177 (32%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM---QFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I   +   +    P+     G AA
Sbjct: 349 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRSELAAAKAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DI----- 151
           S G  + +             G  G+   +      L        G A+    DI     
Sbjct: 409 SGGYWISTPASYIVANPSTLTGSIGIFGVINTVENSLDSIGVHTDGVATSPLADISMTKA 468

Query: 152 ------ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
                 +     I    +R   +  ++   T E+V+K        +  +A   G+VD
Sbjct: 469 LPPEVQQIMQLSIENGYKRFITLVAESRKSTPEQVDKIAQGHVW-TGQDAKANGLVD 524


>gi|308751714|gb|ADO45197.1| protein of unknown function DUF107 [Hydrogenobacter thermophilus
           TK-6]
          Length = 430

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 55/138 (39%), Gaps = 7/138 (5%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCM---GQAASMGSLLLSAGEKGMRFALPNA 133
           L +N+PGG+ ++   I    Q    P+  F     G+AAS G+++  + +       P  
Sbjct: 59  LELNTPGGLESSMREIVQEFQRTPLPVVVFVYPSGGRAASAGAIITISADIA--VMSPGT 116

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            I    P     G+   + +  + +++          K  G+  E VEK +     ++  
Sbjct: 117 NIGAAHPVQMGGGEQDSVMK--EKVLQDALAFVRSIAKEKGRNVEVVEKMVKESISLTPE 174

Query: 194 EACDWGVVDKVLMSRIDI 211
           EA    V+D +     ++
Sbjct: 175 EALKSRVIDMIATDMTEL 192


>gi|24214825|ref|NP_712306.1| periplasmic serine protease [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45657659|ref|YP_001745.1| endopeptidase IV [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|24195838|gb|AAN49324.1| periplasmic serine protease [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45600899|gb|AAS70382.1| signal peptide peptidase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 328

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 49/190 (25%), Positives = 75/190 (39%), Gaps = 36/190 (18%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK-----PPI 103
           G  ED +   +  QL   E +   K + L INSPGG VTA   IY  +   K     P +
Sbjct: 69  GGQEDSILVEVKKQLELAELDPEIKAVILKINSPGGSVTASDIIYREILQFKTKKKIPVV 128

Query: 104 STFCMGQAA-----SMGSLLL------SAGEKGMRFALPN-----ARILLHQPSGGFSGQ 147
           S F    A+     SM + LL        G  G+  +  N      ++ +   S    G 
Sbjct: 129 SLFMDTAASGAYYISMATDLLIAHPTSVTGSIGVILSGINVKEGLDKLGIKDQSIRSGGN 188

Query: 148 ASDIERHAQDIVKIKRRLNEIYVK-------------NCGKTYEEVEKTLDRDHIMSASE 194
            + I    +++   +R+L +  V                GK   E+ K  D   I +AS+
Sbjct: 189 KT-IGSPLEELSPEQRKLLQSIVDDLFEKFFDIVKKGRPGKNPSELRKVAD-GRIFTASQ 246

Query: 195 ACDWGVVDKV 204
           A   G++DK+
Sbjct: 247 ALQHGLIDKI 256


>gi|288818113|ref|YP_003432461.1| membrane-bound serine protease ClpP class [Hydrogenobacter
           thermophilus TK-6]
 gi|288787513|dbj|BAI69260.1| membrane-bound serine protease ClpP class [Hydrogenobacter
           thermophilus TK-6]
          Length = 438

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 55/138 (39%), Gaps = 7/138 (5%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCM---GQAASMGSLLLSAGEKGMRFALPNA 133
           L +N+PGG+ ++   I    Q    P+  F     G+AAS G+++  + +       P  
Sbjct: 67  LELNTPGGLESSMREIVQEFQRTPLPVVVFVYPSGGRAASAGAIITISADIA--VMSPGT 124

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            I    P     G+   + +  + +++          K  G+  E VEK +     ++  
Sbjct: 125 NIGAAHPVQMGGGEQDSVMK--EKVLQDALAFVRSIAKEKGRNVEVVEKMVKESISLTPE 182

Query: 194 EACDWGVVDKVLMSRIDI 211
           EA    V+D +     ++
Sbjct: 183 EALKSRVIDMIATDMTEL 200


>gi|330810297|ref|YP_004354759.1| hypothetical protein PSEBR_a3432 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378405|gb|AEA69755.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 187

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 11/148 (7%)

Query: 65  FLEAENPQKE-ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
            LEA     + + L +++ GG    G  +Y  ++ +  P+     G   SMG ++  A  
Sbjct: 24  CLEAIEKGADSLMLNLSTVGGSTNFGFTLYTFIKSLPVPVRAVNAGNIESMGIVMYLAAS 83

Query: 124 KGMRFALPNARILLHQPSGGFSGQAS-DIERHAQDIVKIKR---RLNEIYVKNCGKTYEE 179
              R   P++R L+H P   + GQ S D  R  + +  +     R  EIYVK       +
Sbjct: 84  D--RTTTPHSRFLIH-PMNWYFGQKSVDHSRLREYLSSLDNDVARYVEIYVKETAGAATQ 140

Query: 180 VEK---TLDRDHIMSASEACDWGVVDKV 204
           ++        + ++ A  +  +G+  +V
Sbjct: 141 LDIFKCLCAEERVIPAENSLAFGIAHRV 168


>gi|294782115|ref|ZP_06747441.1| protease IV [Fusobacterium sp. 1_1_41FAA]
 gi|294480756|gb|EFG28531.1| protease IV [Fusobacterium sp. 1_1_41FAA]
          Length = 551

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 68/175 (38%), Gaps = 29/175 (16%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  +L  LE     K + L INSPGG       IY  ++ ++ PI        AS G 
Sbjct: 307 DNVVEKLEVLEDIKNLKGLVLRINSPGGSALESEKIYQKLKKLEIPIYISMGDLCASGGY 366

Query: 117 LLLSAGEK------------GMRFALPNARILLHQPSGGFSGQAS----DIERHAQDI-- 158
            + + G+K            G+    P    ++++      G +     DI      +  
Sbjct: 367 YIATVGKKLFATSVTLTGSIGVVILYPEFTEIINKLKVNMEGFSKGKGFDIFDVFSKLSE 426

Query: 159 ---VKIKRRLNEIYV---KNCGK----TYEEVEKTLDRDHIMSASEACDWGVVDK 203
               KI   +NE+Y    ++  +    + E++EK       +  S+A + G+VD+
Sbjct: 427 ESKEKIIYSMNEVYSEFKEHVMQARNISEEDLEKIAGGRVWL-GSQAKENGLVDE 480


>gi|297584649|ref|YP_003700429.1| hypothetical protein Bsel_2361 [Bacillus selenitireducens MLS10]
 gi|297143106|gb|ADH99863.1| protein of unknown function DUF107 [Bacillus selenitireducens
           MLS10]
          Length = 442

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 65/151 (43%), Gaps = 11/151 (7%)

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           E     I   +++PGG V A   I   ++  +P  + F + +A S G+ +    ++ +  
Sbjct: 62  EEGASHIIFEVDTPGGFVDAAGGIASLIRNAEPDTTAFIVERALSAGAYISLNADQIVMA 121

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKR--RLNE---IYV-KNCGKTYEEVEK 182
              N   +         G A+D +  +  +  ++    LN+   +Y      ++ E  E 
Sbjct: 122 PGSN---MGSATVVDGGGSAADDKAQSAWLANMREAAELNDRDPVYALAMADRSIEIPEL 178

Query: 183 TLDRDHIMS--ASEACDWGVVDKVLMSRIDI 211
            +  D+I++    +A + G  ++VL +R ++
Sbjct: 179 DITDDNILTLTPGQALEVGYAEEVLSTREEV 209


>gi|170768773|ref|ZP_02903226.1| protease 4 [Escherichia albertii TW07627]
 gi|170122321|gb|EDS91252.1| protease 4 [Escherichia albertii TW07627]
          Length = 618

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 61/177 (34%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM---QFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I   +   +    P+     G AA
Sbjct: 349 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRSELAAARAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L+       G ++    DI     
Sbjct: 409 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLNSIGVHTDGVSTSPLADISITKA 468

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 469 LPPEAQQMMQLSIENGYKRFITLVADARKSTPEQIDKIAQGHVW-TGQDAKANGLVD 524


>gi|153853725|ref|ZP_01995081.1| hypothetical protein DORLON_01072 [Dorea longicatena DSM 13814]
 gi|149753475|gb|EDM63406.1| hypothetical protein DORLON_01072 [Dorea longicatena DSM 13814]
          Length = 327

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 62/167 (37%), Gaps = 29/167 (17%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI----KPPISTFCMGQAASMGSLLLSA 121
           L  ++  K I LY++SPGG V     +Y  ++      K PI  +    AAS G ++  A
Sbjct: 94  LMDDSNNKGILLYVDSPGGTVYESEELYQKLKEYKETTKRPIWDYMAHYAASGGYMVSMA 153

Query: 122 GEKGM-----------RFALPNARILLHQPSG-----GFSGQASD--------IERHAQD 157
            +K                       L++  G       SG+  D        I  +   
Sbjct: 154 SDKIYANSNTTTGSIGVIMSGYDMSGLYKKLGIRYVSITSGKNKDSSKFTDEQIAIYQDQ 213

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           I +       I       + E+V+K  D     +A +A + G++D++
Sbjct: 214 INEAYEEFVNIVADGRDMSVEDVKKLADGRTY-TAKQAKNNGLIDEI 259


>gi|294998920|gb|ADF58234.1| putative protease subunit [Pseudomonas phage JG004]
          Length = 182

 Score = 47.2 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 50/148 (33%), Gaps = 7/148 (4%)

Query: 50  QIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMG 109
                    +  +L  LE      E+ + IN  GG V    AI   ++  + P+     G
Sbjct: 18  PYVIKSLEELTEELWTLENAGQNDEVYITINGCGGQVETANAIIRAIKECQAPVHARLEG 77

Query: 110 QAASMGSLLLSAGEKGMRFALPNARILLHQPS-GGFSGQASD-IERHAQDIVKIKRRLNE 167
           + AS  + +  A +            ++H PS G  S    + +   A       + ++ 
Sbjct: 78  ECASAMTAIALACDSVE--IDQFTYFMIHAPSFGVVSADFRNSLRNAAFSSAWCDKWVDH 135

Query: 168 IYVKN-CGKTYEEVEKTLDRDHIMSASE 194
           +Y      K  E V+     +  +   E
Sbjct: 136 VYSDFLTEKELERVKA--GEELYIGGEE 161


>gi|237740732|ref|ZP_04571213.1| protease IV [Fusobacterium sp. 2_1_31]
 gi|229422749|gb|EEO37796.1| protease IV [Fusobacterium sp. 2_1_31]
          Length = 294

 Score = 47.2 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 65/175 (37%), Gaps = 29/175 (16%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  +L  LE     K + L INSPGG       IY  ++ ++ PI        AS G 
Sbjct: 50  DNVVEKLETLEDIKNLKGLVLRINSPGGSALESEKIYQKLKKLEIPIYISMGDFCASGGY 109

Query: 117 LLLSAGEK------------GMRFALPNARILLHQPSGGFSGQAS----DIERHAQDI-- 158
            + + G+K            G+    P     +++      G +     DI      +  
Sbjct: 110 YIATVGKKLFATPVTLTGSIGVVILYPEFSETINKLKVNMEGFSKGKGFDIFDVFSKLSE 169

Query: 159 ---VKIKRRLNEIYVKNC-------GKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
               KI   +NE+Y +           + E++EK       +  S+A + G+VD+
Sbjct: 170 ESKEKIVYSMNEVYSEFKAHVMEARNISEEDLEKIAGGRVWL-GSQAKENGLVDE 223


>gi|294338322|emb|CBJ94361.1| Probable phage ClpP protease [Campylobacter phage CPt10]
          Length = 290

 Score = 47.2 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 54/146 (36%), Gaps = 15/146 (10%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQ-FIKPPISTFCMGQAASMGSLLLSAGEK 124
           L   N    I ++I S GG         + ++      ++T       S G+++   G  
Sbjct: 60  LNGANEGDSIQIFIASVGGFADELNRFTNIIRTKFYGNVTTVLNPFGYSCGAMMFLIG-- 117

Query: 125 GMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK-----IKRRLNEIYVKNCGKTYEE 179
             R    N+ I+ H  S G SG+ SD++       K     +K  LN    K       E
Sbjct: 118 NSRVIYENSSIMFHSVSFGVSGKHSDVKTQFDFSNKYWNEYMKSLLNPYLTKK------E 171

Query: 180 VEKTLDR-DHIMSASEACDWGVVDKV 204
           +E  +D  +    A E C  G+   +
Sbjct: 172 IELLIDGVEFWFDAYEMCKRGIATHI 197


>gi|57281900|emb|CAD19142.1| hypothetical protein [Oenococcus phage fOg44]
          Length = 89

 Score = 47.2 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 26/49 (53%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASM 114
           L +    ++I L INS GG V+A   IY  ++  +  ++ F  G AAS 
Sbjct: 41  LNSAASGEDIQLNINSNGGDVSAASTIYSMLKAYQGKVNVFIQGMAASA 89


>gi|258648041|ref|ZP_05735510.1| signal peptide peptidase SppA [Prevotella tannerae ATCC 51259]
 gi|260851896|gb|EEX71765.1| signal peptide peptidase SppA [Prevotella tannerae ATCC 51259]
          Length = 587

 Score = 47.2 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 70/193 (36%), Gaps = 32/193 (16%)

Query: 55  MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDT--MQFIKPPISTFCMGQAA 112
           +   +   L  L  ++  K + L +NS GG   A   I+    +   K P+     G AA
Sbjct: 327 VGNQVIQDLDELANDDNIKAVVLRVNSGGGSAYASEQIWHAVELLKKKKPVVVSMGGTAA 386

Query: 113 SMGSLLLSAGEK------------GMRFALPNARILLHQPSG-----GFSGQASDIE--- 152
           S G  +    +K            G+   +P+   L+ +  G       + +ASD     
Sbjct: 387 SGGYYISCGADKIIADPTTVTGSIGIFGMIPDFSGLMTEKLGLHFDIVKTNEASDFGAMG 446

Query: 153 --RHAQDIVKIKRRLNEIY-------VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
               A +   ++  +N  Y            KT E++ +        +  +A   G++D+
Sbjct: 447 RGMTAAEGEALQNYVNRGYGLFLKRVANGRNKTVEQINQVAQGRVW-TGRQALKLGLIDQ 505

Query: 204 VLMSRIDIEEKSK 216
           +      I+E ++
Sbjct: 506 LGTLEDAIKEAAR 518


>gi|332157739|ref|YP_004423018.1| nfeD protein [Pyrococcus sp. NA2]
 gi|331033202|gb|AEC51014.1| nfeD protein [Pyrococcus sp. NA2]
          Length = 439

 Score = 47.2 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 60/145 (41%), Gaps = 7/145 (4%)

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM---GQAASMGSLLLSAGEKG 125
           EN  + I + +++PGG   A M I   +Q  K P+  F       AAS G+ +       
Sbjct: 51  ENNARAIIIELDTPGGRADAMMNIIQRIQQAKVPVIVFVYPPGAIAASAGTYIALGSH-- 108

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185
           +    P   I   +P  G++   S I +    IV       +   +  G+     EK + 
Sbjct: 109 LIAMAPGTSIGACRPILGYAQNGS-IIQAPPKIVNHYIAYIKSLAQESGRNVTIAEKFIT 167

Query: 186 RDHIMSASEACDWGVVDKVLMSRID 210
            D  ++  EA  +GV+ +V+   ++
Sbjct: 168 EDLSLTPEEALKYGVI-EVIARDVN 191


>gi|188585819|ref|YP_001917364.1| protein of unknown function DUF107 [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350506|gb|ACB84776.1| protein of unknown function DUF107 [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 458

 Score = 47.2 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 59/153 (38%), Gaps = 21/153 (13%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I L IN+PGG + A   I D +   + P+  F   QA S GS L  A ++   +  P   
Sbjct: 74  IVLDINTPGGALDASFEIKDLIVNEEIPVYAFVNSQAISAGSYLALASDEI--YMRPTGT 131

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD------- 187
           +   +   G        E   + ++ +         K   +  +     + R+       
Sbjct: 132 MGAAEARMGT-------EVADEKVMSVWETEMRTVAKERDRDPDIAAAMVRREMEIEGLV 184

Query: 188 -----HIMSASEACDWGVVDKVLMSRIDIEEKS 215
                  +SA EA + G+ + ++ +  ++ EK+
Sbjct: 185 SENQLLTLSAEEAKEHGMAEGIVNNYDELLEKT 217


>gi|297583628|ref|YP_003699408.1| signal peptide peptidase SppA, 36K type [Bacillus selenitireducens
           MLS10]
 gi|297142085|gb|ADH98842.1| signal peptide peptidase SppA, 36K type [Bacillus selenitireducens
           MLS10]
          Length = 328

 Score = 47.2 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 71/186 (38%), Gaps = 35/186 (18%)

Query: 63  LLFLEAENPQKEIS---LYINSPGGVVTAGMAIYDTM----QFIKPPISTFCMGQAASMG 115
           L  LE      +I    L +N+PGG V     +++ +    +    P+     GQAAS G
Sbjct: 85  LRQLEYAAESTDIYGVILQVNTPGGGVVESDELHNRIVAIQEEFDKPVYAVMGGQAASGG 144

Query: 116 SLLLSAGEK------------GMRFALPNARILLH----QPSGGFSGQASDIERHAQDI- 158
             + +  +K            G+     N   L            SG+  DI    +++ 
Sbjct: 145 YYISAPADKIYANAQTFTGSIGVIIQSLNVAGLAEEWGVSLETFTSGEFKDILSPTKEVT 204

Query: 159 VKIKRRLNEIYVKNCGKTYEEV---EKTLDRD--------HIMSASEACDWGVVDKVLMS 207
              +  LNEI + +  +  + V    + L RD         I + ++A + G+VD++   
Sbjct: 205 DDERELLNEIVMDSYEQFVDVVDNGRENLSRDEVYELADGRIFTGNQAVENGLVDEIGNR 264

Query: 208 RIDIEE 213
              IE+
Sbjct: 265 DAAIED 270


>gi|115379446|ref|ZP_01466546.1| signal peptide peptidase SppA, 67K type [Stigmatella aurantiaca
           DW4/3-1]
 gi|310821059|ref|YP_003953417.1| peptidase s49, protease iv [Stigmatella aurantiaca DW4/3-1]
 gi|115363555|gb|EAU62690.1| signal peptide peptidase SppA, 67K type [Stigmatella aurantiaca
           DW4/3-1]
 gi|309394131|gb|ADO71590.1| Peptidase S49, protease IV [Stigmatella aurantiaca DW4/3-1]
          Length = 592

 Score = 47.2 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 67/196 (34%), Gaps = 41/196 (20%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD--TMQFIKP 101
           IV   G+        I  +L  L  +   K + L +NSPGG  +A   I     +     
Sbjct: 318 IVNGEGRPSQTGGDRISRELRKLRLDEDVKAVVLRVNSPGGSASASDLIQREVIVTRKVK 377

Query: 102 PISTFCMGQAASMGSLLLSAGEK------------GMRFALPNARILLHQPSGGFSGQAS 149
           P+       AAS G  + + G++            G+   LPN      Q      G   
Sbjct: 378 PVVISMGSYAASGGYWISTYGDRIFAQPTTITGSIGVFGMLPNV-----QKLANTHGITF 432

Query: 150 DIERHAQ--------------DIVKIKRRLNEIYVKNCGK-------TYEEVEKTLDRDH 188
           D  + A+              ++ +I+  ++ IY +   K         E V +      
Sbjct: 433 DSVQTAKMANPATLARPKTEAELARIQHMVDRIYEQFLSKVAEGRKLPRERVHEIAQGRV 492

Query: 189 IMSASEACDWGVVDKV 204
             S  EA   G+VD+V
Sbjct: 493 W-SGEEARKLGLVDEV 507


>gi|62184771|ref|YP_219556.1| putative exported protease [Chlamydophila abortus S26/3]
 gi|62147838|emb|CAH63584.1| putative exported protease [Chlamydophila abortus S26/3]
          Length = 335

 Score = 47.2 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 70/178 (39%), Gaps = 31/178 (17%)

Query: 54  HMATLICAQLLFLEAENPQ---KEISLYINSPGGVVTAGMAIYDTMQFIK----PPISTF 106
           H A +I   +  L++   +   K I + ++ PGG V     +Y T+QF K     P+  F
Sbjct: 80  HTAKIIQEAITTLDSPPYKDRVKGIIIDMDCPGGEVFEISRVYSTIQFWKQRTQCPVYVF 139

Query: 107 CMGQAASMGSLLLSAGEKGM--RFALPNARILLHQPSGGF------SGQASDIERHAQDI 158
             G  AS G  +  A +K      +L  +  +L  P           G  SD+    +D 
Sbjct: 140 VNGLCASGGYYVACAADKIYSTSSSLIGSIGVLSGPYFNVKEGLSRYGVQSDLLIAGKD- 198

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG-VVDKVLMSRIDIEEKS 215
              K  +N  Y +   K  E  ++ +D    +       +G  VD V+ +R  + +  
Sbjct: 199 ---KAPMNP-YTEWTAKDREIRQEIID---YL-------YGQFVDVVVTNRPLLTKDK 242


>gi|325925728|ref|ZP_08187103.1| signal peptide peptidase SppA, 67K type [Xanthomonas perforans
           91-118]
 gi|325543856|gb|EGD15264.1| signal peptide peptidase SppA, 67K type [Xanthomonas perforans
           91-118]
          Length = 642

 Score = 47.2 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 61/161 (37%), Gaps = 32/161 (19%)

Query: 73  KEISLYINSPGGVVTAGMAIYD---TMQFIKPPISTFCMGQAASMGSLLLSA-------- 121
           K + L ++SPGG V A   I      ++    P+       AAS G  +           
Sbjct: 383 KAVVLRVDSPGGEVFASEQIRREVVALKQAGKPVVVSMGDLAASGGYWISMNADRIYADP 442

Query: 122 ----GEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK---------IKRRLNEI 168
               G  G+   +PN    L +      G A+     A DI +         I+  +N+ 
Sbjct: 443 STISGSIGIFGMVPNLTRALDKIGVHTDGVATTRFAGAFDITRPLDPAAGQVIQAVINKG 502

Query: 169 YVKNCG-------KTYEEVEKTLDRDHIMSASEACDWGVVD 202
           Y    G       ++ E ++K + R  + S ++A + G+VD
Sbjct: 503 YADFTGKVAQARHQSVEAIDK-VARGRVWSGAQAKERGLVD 542


>gi|78049494|ref|YP_365669.1| protease IV [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78037924|emb|CAJ25669.1| protease IV [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 633

 Score = 47.2 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 61/161 (37%), Gaps = 32/161 (19%)

Query: 73  KEISLYINSPGGVVTAGMAIYD---TMQFIKPPISTFCMGQAASMGSLLLSA-------- 121
           K + L ++SPGG V A   I      ++    P+       AAS G  +           
Sbjct: 374 KAVVLRVDSPGGEVFASEQIRREVVALKQAGKPVVVSMGDLAASGGYWISMNADRIYADP 433

Query: 122 ----GEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK---------IKRRLNEI 168
               G  G+   +PN    L +      G A+     A DI +         I+  +N+ 
Sbjct: 434 STISGSIGIFGMVPNLTRALDKIGVHTDGVATTRFAGAFDITRPLDPAAGQVIQAVINKG 493

Query: 169 YVKNCG-------KTYEEVEKTLDRDHIMSASEACDWGVVD 202
           Y    G       ++ E ++K + R  + S ++A + G+VD
Sbjct: 494 YADFTGKVAQARHQSVEAIDK-VARGRVWSGAQAKERGLVD 533


>gi|167761166|ref|ZP_02433293.1| hypothetical protein CLOSCI_03571 [Clostridium scindens ATCC 35704]
 gi|167660832|gb|EDS04962.1| hypothetical protein CLOSCI_03571 [Clostridium scindens ATCC 35704]
          Length = 325

 Score = 46.8 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 62/171 (36%), Gaps = 37/171 (21%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK----PPISTFCMGQAASMGSLLLSA 121
           L  ++  K I LY++SPGG V     +Y  ++  K     P+  +    AAS G ++  A
Sbjct: 92  LMEDSNNKGILLYVDSPGGTVYESEELYLKLKDYKEATGRPVWDYMAHYAASGGYMVSMA 151

Query: 122 GEKGMRFALPNARILLHQPSGGFSG--------------------------QASD--IER 153
            +K       N+  +        SG                          Q +D  +  
Sbjct: 152 SDK----IYANSNTVTGSIGVIMSGFDMTGLYEKLGIRYFSITSGEYKDSSQMTDEQMAI 207

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           + + + +   +   I  +  G + E V    D     +A +A D G++D +
Sbjct: 208 YQEQVDEYYNKFVSIVAEGRGMSEEAVRGLADGRTY-TAEQAIDNGLIDSI 257


>gi|256845156|ref|ZP_05550614.1| signal peptide peptidase SppA, 67K type [Fusobacterium sp.
           3_1_36A2]
 gi|256718715|gb|EEU32270.1| signal peptide peptidase SppA, 67K type [Fusobacterium sp.
           3_1_36A2]
          Length = 551

 Score = 46.8 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 65/175 (37%), Gaps = 29/175 (16%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  +L  LE     K + L INSPGG       IY  ++ ++ PI        AS G 
Sbjct: 307 DNVVEKLDELEDIKNLKGLVLRINSPGGSALESEKIYQKLKKLEVPIYISMGDLCASGGY 366

Query: 117 LLLSAGEK------------GMRFALPNARILLHQPSGGFSGQAS----DIERHAQDI-- 158
            + + G+K            G+    P     +++      G +     DI      +  
Sbjct: 367 YIATVGKKLFANPVTLTGSIGVVVLYPEFTETINKLKVNMEGFSKGKGFDIFDVFSKLSE 426

Query: 159 ---VKIKRRLNEIYVKNC-------GKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
               KI   +NE+Y +           + E++EK       +  ++A + G+VD+
Sbjct: 427 ESKEKIIYSMNEVYSEFKEHVIQARNISEEDLEKIAGGRVWL-GNKAKENGLVDE 480


>gi|331091470|ref|ZP_08340308.1| hypothetical protein HMPREF9477_00951 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330404026|gb|EGG83576.1| hypothetical protein HMPREF9477_00951 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 327

 Score = 46.8 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 64/166 (38%), Gaps = 33/166 (19%)

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFI----KPPISTFCMGQAASMGSLLLSAGEK 124
           ++  K I L ++SPGG V     +Y  ++        P+ T+    AAS G  + +  +K
Sbjct: 96  DSSNKGILLRVDSPGGTVYESEELYLKLKEYQKETNRPVWTYMEHYAASGGYYISAPSDK 155

Query: 125 GMRFALPNARI------------------LLHQPSGGFSGQASDIERHAQDIVKIKRRLN 166
              +A PN                     L  +     SG+  D+ +  ++   I + + 
Sbjct: 156 I--YANPNTTTGSIGVIISGFDMTGLYEKLGIRSYSITSGKNKDMSQMNEEQTAIYQSIV 213

Query: 167 --------EIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
                   EI       + EEV K  D   I SA +A   G+VD++
Sbjct: 214 DESYGRFVEIVADGRKMSEEEVRKLAD-GRIYSAKQAKANGLVDEI 258


>gi|308187053|ref|YP_003931184.1| protease IV [Pantoea vagans C9-1]
 gi|308057563|gb|ADO09735.1| protease IV [Pantoea vagans C9-1]
          Length = 620

 Score = 46.8 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 60/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM---QFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA  AI + +   Q    PI     G AA
Sbjct: 351 GDTTAAQIRDARLDPKIKAIILRVNSPGGSVTASEAIREELAAAQAAGKPIVVSMGGMAA 410

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DI----- 151
           S G  + +             G  G+   +      L        G A+    DI     
Sbjct: 411 SGGYWISTPASYIVANPSTLTGSIGIFGVINTLENSLDSIGVHTDGVATSPLADISTTKA 470

Query: 152 ------ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
                 +     I    R    +  K+  KT E+++         + S+A   G+VD
Sbjct: 471 LPAEVQQLMHLTIENGYRNFVGLVAKSRHKTPEQIDAIAQGHVW-TGSDAKANGLVD 526


>gi|189466890|ref|ZP_03015675.1| hypothetical protein BACINT_03271 [Bacteroides intestinalis DSM
           17393]
 gi|189435154|gb|EDV04139.1| hypothetical protein BACINT_03271 [Bacteroides intestinalis DSM
           17393]
          Length = 589

 Score = 46.8 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 67/178 (37%), Gaps = 31/178 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP--PISTFCMGQAAS 113
           +  +   L  L+     K + L +NSPGG       I+  +  +K   P+       AAS
Sbjct: 330 SEKVIRDLRKLKENEDVKAVVLRVNSPGGSAFGSEQIWYAVTELKKEKPVIVSMGDYAAS 389

Query: 114 MGSLLLSA------------GEKGMRFALPNARILLHQPSGGF----SGQASDIERHAQD 157
            G  +               G  G+    PN + L  +    F    +   SD     + 
Sbjct: 390 GGYYISCNADSIVADPTTLTGSIGIFGMFPNVKGLTDKIGLSFDVVKTNTYSDFGMMGRA 449

Query: 158 IVKIKRRL--------NEIYVKNC----GKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
           +   ++ L         E++VK C    G T +E++K  +     + ++A + G+VD+
Sbjct: 450 LNDGEKALMQNMVNEGYELFVKRCAEGRGMTTDEIKKIAEGRVW-TGAKAKELGLVDE 506


>gi|212224206|ref|YP_002307442.1| nodulation protein nfeD [Thermococcus onnurineus NA1]
 gi|212009163|gb|ACJ16545.1| nodulation protein nfeD [Thermococcus onnurineus NA1]
          Length = 441

 Score = 46.8 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 61/139 (43%), Gaps = 7/139 (5%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM---GQAASMGSLLLSAGEKGMRFALP 131
           I + +N+PGG   A   I   +Q  K P+  +     G AAS G+ +       +    P
Sbjct: 59  IIIELNTPGGRADAMQEIVMRIQNAKVPVIIYVYPSGGMAASAGTYIALGSH--LIAMAP 116

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
              I   +P  G+    S +E  A+ +      L E   +  G+     E+ +  D  ++
Sbjct: 117 GTVIGACRPILGYGANGSIVEAPAKIVNFYITYLRE-LAEMSGRNATLAEQFITEDRSVT 175

Query: 192 ASEACDWGVVDKVLMSRID 210
           + EA ++GV+ +V+ + ++
Sbjct: 176 SQEALEYGVI-EVVATDVN 193


>gi|325294625|ref|YP_004281139.1| signal peptide peptidase SppA, 36K type [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065073|gb|ADY73080.1| signal peptide peptidase SppA, 36K type [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 292

 Score = 46.4 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/180 (23%), Positives = 61/180 (33%), Gaps = 35/180 (19%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI--KPPISTFCMGQAAS 113
           +      L  LE     K I L ++SPGGVV A   IYD ++ I  K PI       AAS
Sbjct: 51  SDTYVKLLDKLERNKEIKAIVLRVDSPGGVVGACQEIYDKVKEITKKKPIVVSMGSIAAS 110

Query: 114 MGSLLLSAGEKGMRFALPNARI----LLHQPS--------------GGFSGQASD----- 150
            G  L  +       A P        ++ Q                   SG+  D     
Sbjct: 111 GG--LYISVPATKIVANPGTITGSIGVILQAYNVKELADKVGIKVITVKSGKFKDLLNPF 168

Query: 151 -------IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
                  ++     I     +  E   K      E+V+K  D   + +  +A   G+VD+
Sbjct: 169 REPDKGSLQILQALINDSYEQFVEAVAKGRKLPIEKVKKFAD-GRVFTGRQAKKLGLVDE 227


>gi|34496600|ref|NP_900815.1| hypothetical protein CV_1145 [Chromobacterium violaceum ATCC 12472]
 gi|34102454|gb|AAQ58820.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 208

 Score = 46.4 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 62/150 (41%), Gaps = 24/150 (16%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMG 115
           A      L  L   +    + L++N+PGG   AG+ I + +   +  + T    +A SMG
Sbjct: 41  AIHYTDLLYTLRTASSTDIVYLHLNTPGGNFDAGLQIINNITASQAHVVTILEARAYSMG 100

Query: 116 SLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK 175
           +L+  AG++         +++ H  S    G+ ++                +  V   GK
Sbjct: 101 ALIFLAGDEL--VVHDTCQLMFHNYSSALIGKGNE---------------QQAQVAASGK 143

Query: 176 TYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            +E+V + + R   ++  E      +D++L
Sbjct: 144 WFEKVMRHVCRP-FLTDEE------LDRIL 166


>gi|329942445|ref|ZP_08291255.1| peptidase S49 family protein [Chlamydophila psittaci Cal10]
 gi|325506439|gb|ADZ18077.1| putative exported protease [Chlamydophila psittaci 6BC]
 gi|328815355|gb|EGF85343.1| peptidase S49 family protein [Chlamydophila psittaci Cal10]
 gi|328914320|gb|AEB55153.1| peptidase, U7 family protein, putative [Chlamydophila psittaci 6BC]
          Length = 333

 Score = 46.4 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 69/178 (38%), Gaps = 31/178 (17%)

Query: 54  HMATLICAQLLFLEAENPQ---KEISLYINSPGGVVTAGMAIYDTMQFIK----PPISTF 106
           H A +I   +  L++   +   K I + ++ PGG V     +Y  +QF K     P+  F
Sbjct: 78  HTAKIIQDAITTLDSAPYKDRVKGIIIDMDCPGGEVFEISRVYSIIQFWKQRTQCPVYVF 137

Query: 107 CMGQAASMGSLLLSAGEKGM--RFALPNARILLHQPSGGF------SGQASDIERHAQDI 158
             G  AS G  +  A +K      +L  +  +L  P           G  SD+    +D 
Sbjct: 138 VNGLCASGGYYVACAADKIYSTSSSLIGSVGVLSGPYFNVKEGLSRYGVQSDLLIAGKD- 196

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG-VVDKVLMSRIDIEEKS 215
              K  +N  Y +   K  E  ++ +D    +       +G  VD V+ +R  + +  
Sbjct: 197 ---KAPMNP-YTEWTAKDREIRQEIID---YL-------YGQFVDVVVTNRPRLTKDK 240


>gi|327311349|ref|YP_004338246.1| protease IV [Thermoproteus uzoniensis 768-20]
 gi|326947828|gb|AEA12934.1| protease IV, putative [Thermoproteus uzoniensis 768-20]
          Length = 533

 Score = 46.4 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 65/185 (35%), Gaps = 24/185 (12%)

Query: 41  KERI--VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           KERI  + +T  +       +   +L L + +    I LYI+SPGG + A  A+Y  ++ 
Sbjct: 44  KERIVVIPITAPLTSCWVNPLLPYILRLNSSDVAG-IILYIDSPGGTLDATEALYGALKG 102

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG----FSGQASDIERH 154
           +  P+     G  AS    +  A EK   +A P + +                   +E  
Sbjct: 103 LGKPVYAVVSGLDASGAFYVSMAAEKI--YASPGSLVGNIGAWAVINPAVFWTPIPLEIF 160

Query: 155 AQDIVKI--------KRRLNEIYVKNC-------GKTYEEVEKTLDRDHIMSASEACDWG 199
                K+           +++             G         L    + +A EA   G
Sbjct: 161 PSGYEKLFGMSLFGYYDSVDQAAASFLSVVLKSRGDRLNASADLLATGRLFTAQEALRIG 220

Query: 200 VVDKV 204
           ++DK+
Sbjct: 221 LIDKI 225


>gi|91204301|emb|CAJ71954.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 362

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 69/188 (36%), Gaps = 41/188 (21%)

Query: 53  DHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM----QFIKPPISTFCM 108
             +  ++  QL     +   K + L I SPGG +TA   +Y  +    +  +  I  +  
Sbjct: 105 PSIVEIVKEQLEHAANDVQVKAVLLEIESPGGGITASDIMYHQIIKFKKNTQKKIVVYME 164

Query: 109 GQAASMGSLLLSAGEKGMRFALPNARILLHQPS--------------------GGFSGQA 148
             AAS G  + SA +    F + +   +                            SG  
Sbjct: 165 DIAASGGYYIASAAD----FIVAHPTTITGSIGVIMPLINISEFINRHGVVDNSIASGDM 220

Query: 149 SDI-----ERHAQDIVKIKRRLNEIYVKNC-------GKTYEEVEKTLDRDHIMSASEAC 196
            +I     +   ++   ++  +NE+Y++             EEV+K  D   I +  +A 
Sbjct: 221 KEIGSPLKQMTEEETEILQNIINEMYMQFVEVVSIGRNLDVEEVKKIAD-GRIYTGKQAL 279

Query: 197 DWGVVDKV 204
           + G+VDK+
Sbjct: 280 EAGLVDKI 287


>gi|291533785|emb|CBL06898.1| hypothetical protein MHY_22570 [Megamonas hypermegale ART12/1]
          Length = 26

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/26 (80%), Positives = 25/26 (96%)

Query: 21 MVVEQTNRGERSYDIYSRLLKERIVF 46
          MVVEQ+ RGER+YDIYSRLLK+RI+F
Sbjct: 1  MVVEQSGRGERAYDIYSRLLKDRIIF 26


>gi|313847682|emb|CBY16670.1| putative exported protease [Chlamydophila psittaci RD1]
          Length = 335

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 69/178 (38%), Gaps = 31/178 (17%)

Query: 54  HMATLICAQLLFLEAENPQ---KEISLYINSPGGVVTAGMAIYDTMQFIK----PPISTF 106
           H A +I   +  L++   +   K I + ++ PGG V     +Y  +QF K     P+  F
Sbjct: 80  HTAKIIQDAITTLDSAPYKDRVKGIIIDMDCPGGEVFEISRVYSIIQFWKQRTQCPVYVF 139

Query: 107 CMGQAASMGSLLLSAGEKGM--RFALPNARILLHQPSGGF------SGQASDIERHAQDI 158
             G  AS G  +  A +K      +L  +  +L  P           G  SD+    +D 
Sbjct: 140 VNGLCASGGYYVACAADKIYSTSSSLIGSVGVLSGPYFNVKEGLSRYGVQSDLLIAGKD- 198

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG-VVDKVLMSRIDIEEKS 215
              K  +N  Y +   K  E  ++ +D    +       +G  VD V+ +R  + +  
Sbjct: 199 ---KAPMNP-YTEWTAKDREIRQEIID---YL-------YGQFVDVVVTNRPRLTKDK 242


>gi|294663994|ref|ZP_06729409.1| protease IV [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292606238|gb|EFF49474.1| protease IV [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 633

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 69/190 (36%), Gaps = 33/190 (17%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQ-KEISLYINSPGGVVTAGMAIYD---TMQFIK 100
           +    Q    +     A LL    ++   K + L ++SPGG V A   I      ++   
Sbjct: 345 ISGGEQPAGRIGGESTAALLRQARDDDDVKAVVLRVDSPGGEVFASEQIRREVVALKQAG 404

Query: 101 PPISTFCMGQAASMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQA 148
            P+       AAS G  +               G  G+   +PN    L +      G A
Sbjct: 405 KPVVVSMGDLAASGGYWISMNADRIYADPSTISGSIGIFGMVPNLTRALDKIGVHTDGVA 464

Query: 149 SDIERHAQDIVK---------IKRRLNEIYVKNCG-------KTYEEVEKTLDRDHIMSA 192
           +     A DI +         I+  +N+ Y    G       ++ + ++K + R  + S 
Sbjct: 465 TTRFAGAFDITRPLDPAAGQVIQAVINKGYADFTGKVAQARHQSVDAIDK-VARGRVWSG 523

Query: 193 SEACDWGVVD 202
           ++A + G+VD
Sbjct: 524 AQAKERGLVD 533


>gi|294624143|ref|ZP_06702878.1| protease IV [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292601561|gb|EFF45563.1| protease IV [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 633

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 69/190 (36%), Gaps = 33/190 (17%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQ-KEISLYINSPGGVVTAGMAIYD---TMQFIK 100
           +    Q    +     A LL    ++   K + L ++SPGG V A   I      ++   
Sbjct: 345 ISGGEQPAGRIGGESTAALLRQARDDDDVKAVVLRVDSPGGEVFASEQIRREVVALKQAG 404

Query: 101 PPISTFCMGQAASMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQA 148
            P+       AAS G  +               G  G+   +PN    L +      G A
Sbjct: 405 KPVVVSMGDLAASGGYWISMNADRIYADPSTISGSIGIFGMVPNLTRALDKIGVHTDGVA 464

Query: 149 SDIERHAQDIVK---------IKRRLNEIYVKNCG-------KTYEEVEKTLDRDHIMSA 192
           +     A DI +         I+  +N+ Y    G       ++ + ++K + R  + S 
Sbjct: 465 TTRFAGAFDITRPLDPAAGQVIQAVINKGYADFTGKVAQARHQSVDAIDK-VARGRVWSG 523

Query: 193 SEACDWGVVD 202
           ++A + G+VD
Sbjct: 524 AQAKERGLVD 533


>gi|21244537|ref|NP_644119.1| protease IV [Xanthomonas axonopodis pv. citri str. 306]
 gi|21110210|gb|AAM38655.1| protease IV [Xanthomonas axonopodis pv. citri str. 306]
          Length = 633

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 69/190 (36%), Gaps = 33/190 (17%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQ-KEISLYINSPGGVVTAGMAIYD---TMQFIK 100
           +    Q    +     A LL    ++   K + L ++SPGG V A   I      ++   
Sbjct: 345 ISGGEQPAGRIGGESTAALLRQARDDDDVKAVVLRVDSPGGEVFASEQIRREVVALKQAG 404

Query: 101 PPISTFCMGQAASMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQA 148
            P+       AAS G  +               G  G+   +PN    L +      G A
Sbjct: 405 KPVVVSMGDLAASGGYWISMNADRIYADPSTISGSIGIFGMVPNLTRALDKIGVHTDGVA 464

Query: 149 SDIERHAQDIVK---------IKRRLNEIYVKNCG-------KTYEEVEKTLDRDHIMSA 192
           +     A DI +         I+  +N+ Y    G       ++ + ++K + R  + S 
Sbjct: 465 TTRFAGAFDITRPLDPAAGQVIQAVINKGYADFTGKVAQARHQSVDAIDK-VARGRVWSG 523

Query: 193 SEACDWGVVD 202
           ++A + G+VD
Sbjct: 524 AQAKERGLVD 533


>gi|305662677|ref|YP_003858965.1| protein of unknown function DUF107 [Ignisphaera aggregans DSM
           17230]
 gi|304377246|gb|ADM27085.1| protein of unknown function DUF107 [Ignisphaera aggregans DSM
           17230]
          Length = 447

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 60/139 (43%), Gaps = 7/139 (5%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
            + + +NS GG + + + I D +   K P+  F   +A S  S+++      +    P  
Sbjct: 70  PLIIIVNSYGGYLESTINIADILLNAKVPVIGFIADKAFSAASIVVQ--PMHIVAITPYG 127

Query: 134 RILLHQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
            I   QP      +GQ   +   ++ I  I   L   Y +  G+    VE  + R+ ++ 
Sbjct: 128 VIGAAQPIQINPVTGQYEYVN-ESKVINSIVA-LATRYAEARGRNKTAVEMFIRRNLVLR 185

Query: 192 ASEACDWGVVDKVLMSRID 210
             EA  + VVD ++ + +D
Sbjct: 186 GEEAVKYHVVD-IIANDLD 203


>gi|331085365|ref|ZP_08334451.1| hypothetical protein HMPREF0987_00754 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408148|gb|EGG87638.1| hypothetical protein HMPREF0987_00754 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 329

 Score = 46.0 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 69/184 (37%), Gaps = 36/184 (19%)

Query: 51  IEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK----PPISTF 106
            +  +      +++  E     + I L ++SPGG V     +Y  +   K     P+ T+
Sbjct: 84  YQHDITLDYIDRMMEDE---KNQGILLRVDSPGGTVYESEELYRKLVAYKEETGRPVWTY 140

Query: 107 CMGQAASMGSLLLSAGEKGMRFALPNAR-------ILLHQPSGGF-----------SGQA 148
               AAS G  + +  +K   +A PN         +  +  SG +           SG+ 
Sbjct: 141 MEHYAASGGYYISAPSDKI--YANPNTTTGSIGVIMSGYDMSGLYEKLGIRSVSITSGKN 198

Query: 149 SDIERHAQDIVKIK--------RRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            D+ +  ++ + I          R  EI       T E V +  D     +A +A   G+
Sbjct: 199 KDMSKLTEEQIAIYQSSVDESFDRFVEIVADGRKMTEETVREIADGRTY-TAKQAKANGL 257

Query: 201 VDKV 204
           +D++
Sbjct: 258 IDEI 261


>gi|326804384|ref|YP_004327188.1| hypothetical protein PsPhPAKP1_gp043 [Pseudomonas phage PAK_P1]
 gi|290873797|gb|ADD65000.1| hypothetical protein ORF_0043 [Pseudomonas phage PAK_P1]
          Length = 182

 Score = 46.0 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 50/148 (33%), Gaps = 7/148 (4%)

Query: 50  QIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMG 109
                    +  +L  LE      E+ + IN  GG V    AI   ++  + P+     G
Sbjct: 18  PYVIKSLEELTEELWTLENAGQNDEVYITINGCGGQVETANAIIRAIKECQAPVHARLEG 77

Query: 110 QAASMGSLLLSAGEKGMRFALPNARILLHQPS-GGFSGQASD-IERHAQDIVKIKRRLNE 167
           + AS  + +  A +            ++H PS G  S    + +   A       + ++ 
Sbjct: 78  ECASAMTAIALACDSVE--IDQFTYFMIHAPSFGVVSADFRNSLRNAAFSSAWCDKWVDH 135

Query: 168 IYVKN-CGKTYEEVEKTLDRDHIMSASE 194
           +Y      K  E V+     +  +   E
Sbjct: 136 VYSGFLTEKELERVKA--GEELYIGGEE 161


>gi|51893930|ref|YP_076621.1| putative proteinase IV [Symbiobacterium thermophilum IAM 14863]
 gi|51857619|dbj|BAD41777.1| putative proteinase IV [Symbiobacterium thermophilum IAM 14863]
          Length = 312

 Score = 46.0 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 63/181 (34%), Gaps = 36/181 (19%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI---KPPISTFCMGQAA 112
           +  I   L     +   K + L +NSPGG V A   I + ++ +     P+       AA
Sbjct: 71  SETIVKHLDRAAEDPAVKAVVLRVNSPGGSVVASWEIAEAVRRVQDAGKPVVVSMGESAA 130

Query: 113 SMGSLLLSAGEKGMRFALPNARILL------------------HQPSGGFSGQASDIERH 154
           S G  + +  ++    A P+                       ++     SG   D+   
Sbjct: 131 SGGYWISAGADRI--IASPDTMTGSIGVILQVGNLSEVYEKVGYKTYTFKSGPFKDMGSP 188

Query: 155 AQDIVKIKRRLNEIYVKNC------------GKTYEEVEKTLDRDHIMSASEACDWGVVD 202
            +++   +R L +  V               G    +V K  D   I++  +A + G+VD
Sbjct: 189 DREMTDAERDLLQDLVDETYEAFVPVVAEGRGMDEAQVRKIAD-GRILTGRKALELGLVD 247

Query: 203 K 203
           +
Sbjct: 248 E 248


>gi|229584316|ref|YP_002842817.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Sulfolobus islandicus
           M.16.27]
 gi|228019365|gb|ACP54772.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Sulfolobus islandicus
           M.16.27]
          Length = 657

 Score = 46.0 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 54/168 (32%), Gaps = 40/168 (23%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           R V + G+     A      + + E      E S  I+SP         + DT+     P
Sbjct: 449 RAVIIMGEGRAFCAGDDIEMMHYWENTASVIEWSQKISSP---------LIDTLTDYPKP 499

Query: 103 ISTFCMGQAASMGSLLL-----SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
           I     G A   G  LL         +   FA+P   I    P     G           
Sbjct: 500 IIAEVNGLAFGGGMELLILFDIVIASEDATFAIPEGLIGALPPLASSIG----------- 548

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           +  I R++   Y    G+              +SA +A + G+VD V+
Sbjct: 549 VGFISRKIAR-YAL-TGE-------------WLSAKQAKELGLVDTVV 581


>gi|34762510|ref|ZP_00143508.1| Putative signal peptide peptidase sppA [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|27887843|gb|EAA24913.1| Putative signal peptide peptidase sppA [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 502

 Score = 46.0 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 72/195 (36%), Gaps = 36/195 (18%)

Query: 44  IVFVTGQIEDHMA-------TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           I+ + G+I+   +         +  +L  LE     K + L INSPGG       IY  +
Sbjct: 238 IINLEGEIDTRESKESIINYDNVVEKLDELEDIKNLKGLVLRINSPGGSALESEKIYQKL 297

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEK------------GMRFALPNARILLHQPSGGF 144
           + ++ PI        AS G  + + G+K            G+    P     +++     
Sbjct: 298 KKLEIPIYISMGDLCASGGYYIATIGKKLFANPVTLTGSIGVVILYPEFTETINKLKVNM 357

Query: 145 SGQAS----DIERHAQDI-----VKIKRRLNEIYVKNC-------GKTYEEVEKTLDRDH 188
            G +     DI      +      KI   +NE+Y +           + E++EK      
Sbjct: 358 EGFSKGKGFDIFDVFSKLSEESKEKIIYSMNEVYSEFKEHVMEARNISEEDLEKIAGGRV 417

Query: 189 IMSASEACDWGVVDK 203
            +  S+A   G+VD+
Sbjct: 418 WL-GSQAKANGLVDE 431


>gi|325116827|emb|CBZ52380.1| hypothetical protein NCLIV_021680 [Neospora caninum Liverpool]
          Length = 771

 Score = 46.0 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 20/33 (60%)

Query: 173 CGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            G+    +   ++++ +++A EA  +G+VD VL
Sbjct: 729 TGRPEASLRLDIEKEKLLTAEEARVYGLVDAVL 761


>gi|317128309|ref|YP_004094591.1| hypothetical protein Bcell_1597 [Bacillus cellulosilyticus DSM
           2522]
 gi|315473257|gb|ADU29860.1| protein of unknown function DUF107 [Bacillus cellulosilyticus DSM
           2522]
          Length = 444

 Score = 46.0 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 70/173 (40%), Gaps = 13/173 (7%)

Query: 50  QIEDHMATLICAQL---LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTF 106
            +E  +   + A L   +    E+    I   IN+PGG+V A   I   ++    P + F
Sbjct: 39  PVEQEVERGLVAFLQRSINTALEDGADHIVFEINTPGGLVAAANEIAALIENTPTPTTAF 98

Query: 107 CMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLN 166
            + +A S G+ +    ++     +P AR+   Q   G  G A+D + H+  +  +K    
Sbjct: 99  VIDEAMSAGAYISLKADQI--VMVPGARMGAAQVISGGDGNAADDKAHSAWLATMKAAAE 156

Query: 167 E-----IYVKNCGKT---YEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
                 +Y            E    +D    ++ASEA + G  + +  +R ++
Sbjct: 157 GNDRDPLYALAMADPSIDLPEYRAGVDDLLSLTASEALEVGYAEAIASNREEL 209


>gi|192290809|ref|YP_001991414.1| hypothetical protein Rpal_2425 [Rhodopseudomonas palustris TIE-1]
 gi|192284558|gb|ACF00939.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1]
          Length = 263

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 7/130 (5%)

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           ++ +NSPGG V+  +A+   ++  K           AS   L+L  G +  R     A +
Sbjct: 128 TVVLNSPGGSVSDALAMGRLIREHKLATEVEAGKYCASSCPLMLFGGTE--RRVGAKAAV 185

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL----DRDHIMS 191
            +HQ     S + +       D  +I  R    Y+++ G   E   + +    DR  +  
Sbjct: 186 GVHQVFAVKSTEVAAPRDQMSDAQRISARCQR-YLRDMGIDLEVWIRAMETPKDRLFVFK 244

Query: 192 ASEACDWGVV 201
             E   +G+V
Sbjct: 245 PEELTRYGIV 254


>gi|39935202|ref|NP_947478.1| hypothetical protein RPA2133 [Rhodopseudomonas palustris CGA009]
 gi|39649053|emb|CAE27574.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
          Length = 263

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 7/130 (5%)

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           ++ +NSPGG V+  +A+   ++  K           AS   L+L  G +  R     A +
Sbjct: 128 TVVLNSPGGSVSDALAMGRLIREHKLATEVEAGKYCASSCPLMLFGGTE--RRVGAKAAV 185

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL----DRDHIMS 191
            +HQ     S + +       D  +I  R    Y+++ G   E   + +    DR  +  
Sbjct: 186 GVHQVFAVKSTEVAAPRDQMSDAQRISARCQR-YLRDMGIDLEVWIRAMETPKDRLFVFK 244

Query: 192 ASEACDWGVV 201
             E   +G+V
Sbjct: 245 PEELTRYGIV 254


>gi|227827149|ref|YP_002828928.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Sulfolobus islandicus
           M.14.25]
 gi|227458944|gb|ACP37630.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Sulfolobus islandicus
           M.14.25]
          Length = 657

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 54/168 (32%), Gaps = 40/168 (23%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           R V + G+     A      + + E      E S  I+SP         + DT+     P
Sbjct: 449 RAVIIMGEGRAFCAGDDIEMMHYWENTASVIEWSQKISSP---------LIDTLTDYPKP 499

Query: 103 ISTFCMGQAASMGSLLL-----SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
           I     G A   G  LL         +   FA+P   I    P     G           
Sbjct: 500 IIAEVNGLAFGGGMELLILFDIVIASEDATFAIPEGLIGALPPLASSIG----------- 548

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           +  I R++   Y    G+              +SA +A + G+VD V+
Sbjct: 549 VGFISRKIAR-YAL-TGE-------------WLSAKQAKELGLVDTVV 581


>gi|227829710|ref|YP_002831489.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Sulfolobus islandicus
           L.S.2.15]
 gi|227456157|gb|ACP34844.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Sulfolobus islandicus
           L.S.2.15]
          Length = 657

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 54/168 (32%), Gaps = 40/168 (23%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           R V + G+     A      + + E      E S  I+SP         + DT+     P
Sbjct: 449 RAVIIMGEGRAFCAGDDIEMMHYWENTASVIEWSQKISSP---------LIDTLTDYPKP 499

Query: 103 ISTFCMGQAASMGSLLL-----SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
           I     G A   G  LL         +   FA+P   I    P     G           
Sbjct: 500 IIAEVNGLAFGGGMELLILFDIVIASEDATFAIPEGLIGALPPLASSIG----------- 548

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           +  I R++   Y    G+              +SA +A + G+VD V+
Sbjct: 549 VGFISRKIAR-YAL-TGE-------------WLSAKQAKELGLVDTVV 581


>gi|229578615|ref|YP_002837013.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Sulfolobus islandicus
           Y.G.57.14]
 gi|284173446|ref|ZP_06387415.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein [Sulfolobus
           solfataricus 98/2]
 gi|228009329|gb|ACP45091.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Sulfolobus islandicus
           Y.G.57.14]
          Length = 657

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 54/168 (32%), Gaps = 40/168 (23%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           R V + G+     A      + + E      E S  I+SP         + DT+     P
Sbjct: 449 RAVIIMGEGRAFCAGDDIEMMHYWENTASVIEWSQKISSP---------LIDTLTDYPKP 499

Query: 103 ISTFCMGQAASMGSLLL-----SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
           I     G A   G  LL         +   FA+P   I    P     G           
Sbjct: 500 IIAEVNGLAFGGGMELLILFDIVIASEDATFAIPEGLIGALPPLASSIG----------- 548

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           +  I R++   Y    G+              +SA +A + G+VD V+
Sbjct: 549 VGFISRKIAR-YAL-TGE-------------WLSAKQAKELGLVDTVV 581


>gi|284997311|ref|YP_003419078.1| 3-hydroxyacyl-CoA dehydrogenase, NAD-binding protein [Sulfolobus
           islandicus L.D.8.5]
 gi|284445206|gb|ADB86708.1| 3-hydroxyacyl-CoA dehydrogenase, NAD-binding protein [Sulfolobus
           islandicus L.D.8.5]
          Length = 657

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 54/168 (32%), Gaps = 40/168 (23%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           R V + G+     A      + + E      E S  I+SP         + DT+     P
Sbjct: 449 RAVIIMGEGRAFCAGDDIEMMHYWENTASVIEWSQKISSP---------LIDTLTDYPKP 499

Query: 103 ISTFCMGQAASMGSLLL-----SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
           I     G A   G  LL         +   FA+P   I    P     G           
Sbjct: 500 IIAEVNGLAFGGGMELLILFDIVIASEDATFAIPEGLIGALPPLASSIG----------- 548

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           +  I R++   Y    G+              +SA +A + G+VD V+
Sbjct: 549 VGFISRKIAR-YAL-TGE-------------WLSAKQAKELGLVDTVV 581


>gi|229582604|ref|YP_002841003.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Sulfolobus islandicus
           Y.N.15.51]
 gi|228013320|gb|ACP49081.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Sulfolobus islandicus
           Y.N.15.51]
          Length = 657

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 54/168 (32%), Gaps = 40/168 (23%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           R V + G+     A      + + E      E S  I+SP         + DT+     P
Sbjct: 449 RAVIIMGEGRAFCAGDDIEMMHYWENTASVIEWSQKISSP---------LIDTLTDYPKP 499

Query: 103 ISTFCMGQAASMGSLLL-----SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
           I     G A   G  LL         +   FA+P   I    P     G           
Sbjct: 500 IIAEVNGLAFGGGMELLILFDIVIASEDATFAIPEGLIGALPPLASSIG----------- 548

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           +  I R++   Y    G+              +SA +A + G+VD V+
Sbjct: 549 VGFISRKIAR-YAL-TGE-------------WLSAKQAKELGLVDTVV 581


>gi|238619310|ref|YP_002914135.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Sulfolobus islandicus
           M.16.4]
 gi|238380379|gb|ACR41467.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Sulfolobus islandicus
           M.16.4]
          Length = 657

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 54/168 (32%), Gaps = 40/168 (23%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           R V + G+     A      + + E      E S  I+SP         + DT+     P
Sbjct: 449 RAVIIMGEGRAFCAGDDIEMMHYWENTASVIEWSQKISSP---------LIDTLTDYPKP 499

Query: 103 ISTFCMGQAASMGSLLL-----SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
           I     G A   G  LL         +   FA+P   I    P     G           
Sbjct: 500 IIAEVNGLAFGGGMELLILFDIVIASEDATFAIPEGLIGALPPLASSIG----------- 548

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           +  I R++   Y    G+              +SA +A + G+VD V+
Sbjct: 549 VGFISRKIAR-YAL-TGE-------------WLSAKQAKELGLVDTVV 581


>gi|156742893|ref|YP_001433022.1| hypothetical protein Rcas_2943 [Roseiflexus castenholzii DSM 13941]
 gi|156234221|gb|ABU59004.1| protein of unknown function DUF114 [Roseiflexus castenholzii DSM
           13941]
          Length = 279

 Score = 45.6 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 61/163 (37%), Gaps = 23/163 (14%)

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           A L  ++  +    I L +++PGG+V A   I   ++     ++ F    A S G+L+  
Sbjct: 72  AVLRAIKMTDKDVPIDLVLHTPGGLVLAAEQIASALRKHPAKVTVFVPHYAMSGGTLIAL 131

Query: 121 AGEKGMR----FALPNARILLHQPSGGF-----SGQASDI--------ERHAQDIVKIKR 163
           A ++ +        P    L  QP+            S+I        +   + I ++K 
Sbjct: 132 AADEIVMDENAVLGPVDPQLGQQPAASILKVLERKPISEIDDETLIMADIAEKAIRQVKA 191

Query: 164 RLNEIYVKNCG-KTYEEVEKTLDRDHI-----MSASEACDWGV 200
            + E+     G +  E +   L          +S  EA + G+
Sbjct: 192 TVIELLADRIGAEKAEHIATMLATGVWTHDYPISVREARELGL 234


>gi|91773747|ref|YP_566439.1| nodulation efficiency protein NfeD [Methanococcoides burtonii DSM
           6242]
 gi|91712762|gb|ABE52689.1| protein with NfeD-like domain [Methanococcoides burtonii DSM 6242]
          Length = 437

 Score = 45.6 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 66/165 (40%), Gaps = 11/165 (6%)

Query: 55  MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM---GQA 111
           +A  +    L L  +N  + + + +N+PGG V   + I + +     P+  +      +A
Sbjct: 43  VADDLVIDALQLAEQNEYEALIITLNTPGGGVDETLKIIEAIDRSDIPVIGYVYPGGTKA 102

Query: 112 ASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIE-RHAQDIVKIKRRLNEIY 169
            S G+L+L   +       PN  I   QP      G    IE      IV     L +  
Sbjct: 103 WSAGTLILIGTDIA--AMSPNTIIGSAQPVSVSPQG----IEPIEDDKIVNALVALAKTK 156

Query: 170 VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
            K  G+     EK +  +  ++  EA + G+++ V     D+ E+
Sbjct: 157 AKQHGRNETTAEKFITENLNLNDEEALEAGIIEYVASDIDDLLEQ 201


>gi|149177713|ref|ZP_01856313.1| hypothetical protein PM8797T_08609 [Planctomyces maris DSM 8797]
 gi|148843363|gb|EDL57726.1| hypothetical protein PM8797T_08609 [Planctomyces maris DSM 8797]
          Length = 207

 Score = 45.6 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 61/159 (38%), Gaps = 8/159 (5%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
           + ++G + D  +  + ++++ L         +++ +SPGG V AG+ +   ++  K  ++
Sbjct: 37  IALSGDLGDKESD-LVSRVVEL---PRGSRGTIFFDSPGGSVYAGLTLASLIRLRKLNVA 92

Query: 105 TFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS--DIERHAQDIVKIK 162
              +G+ +S    +L       RF      +L H             +    A+    ++
Sbjct: 93  GVALGECSSAA--ILPFAACRHRFVTTYTTLLFHPIRWQSEDDVRFEEAAEWARHFKIME 150

Query: 163 RRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
              + +  +  G     +++       +S  E  D G+ 
Sbjct: 151 SDFDRLQAQLFGCEQSLLDQWTRPGKFVSGQELVDAGLA 189


>gi|328950648|ref|YP_004367983.1| protein of unknown function DUF107 [Marinithermus hydrothermalis
           DSM 14884]
 gi|328450972|gb|AEB11873.1| protein of unknown function DUF107 [Marinithermus hydrothermalis
           DSM 14884]
          Length = 422

 Score = 45.6 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 69/174 (39%), Gaps = 24/174 (13%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPI 103
           ++ + G+I   +A  +  Q L    +     + L++++PGG V A + + DT+     P 
Sbjct: 21  VIPIEGEIGPALADFL-EQSLERAEQEGASGVVLFVDTPGGRVDAAIRMSDTILSTPIPT 79

Query: 104 STFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG---QASDIERHAQDIVK 160
                  A S G+L+  + ++     LP + I    P     G   QA+D +  +    K
Sbjct: 80  LAVVQ-NAFSAGALITLSADQI--AMLPGSEIGAALPITVLPGTQPQAADRKIISGLRGK 136

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRD------------HIMSASEACDWGVVD 202
            +        +  G+  E  E  +D D              +S ++A + G+ D
Sbjct: 137 FRAV-----AEARGRPAELAEAMVDPDIEIEGLAAKGEPLTLSGAKAVELGLAD 185


>gi|119713115|gb|ABL97184.1| protease IV a signal peptide peptidase [uncultured marine bacterium
           EB0_49D07]
          Length = 608

 Score = 45.6 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 60/179 (33%), Gaps = 31/179 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM---QFIKPPISTFCMGQAA 112
           ++ +  Q+         K I   +NSPGG + A   + D +   +     +       AA
Sbjct: 346 SSGVIKQIRSAHENENTKAIVFRVNSPGGSIIASEMMRDELFAAKTKGIKVVVSMGDYAA 405

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----------- 149
           S G  + +             G  G+  ALP     +      F G  +           
Sbjct: 406 SGGVYISTPADYIFAEPTTITGSIGVAIALPTLENAMDYIGVNFDGVVTSKHGGWDPTQA 465

Query: 150 ---DIE-RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
              D++   A        R       +  ++YE+++        + A+ A + G+VD++
Sbjct: 466 IDEDLDKIFASWGADAYDRFVNFVADSRSQSYEDIKAIAGGRVWI-ATSAKEIGLVDEI 523


>gi|325660920|ref|ZP_08149547.1| hypothetical protein HMPREF0490_00279 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472427|gb|EGC75638.1| hypothetical protein HMPREF0490_00279 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 339

 Score = 45.6 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 68/184 (36%), Gaps = 36/184 (19%)

Query: 51  IEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK----PPISTF 106
            +         +++  E     + I L ++SPGG V     +Y  +   K     P+ T+
Sbjct: 94  YQHDTTLDYIDRMMEDE---KNQGILLRVDSPGGTVYESEELYRKLVAYKEETGRPVWTY 150

Query: 107 CMGQAASMGSLLLSAGEKGMRFALPNAR-------ILLHQPSGGF-----------SGQA 148
               AAS G  + +  +K   +A PN         +  +  SG +           SG+ 
Sbjct: 151 MEHYAASGGYYISAPSDKI--YANPNTTTGSIGVIMSGYDMSGLYEKLGIRSVSITSGKN 208

Query: 149 SDIERHAQDIVKIK--------RRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            D+ +  ++ + I          R  EI       T E V +  D     +A +A   G+
Sbjct: 209 KDMSKLTEEQIAIYQSSVDESFDRFVEIVADGRKMTEETVREIADGRTY-TAKQAKANGL 267

Query: 201 VDKV 204
           +D++
Sbjct: 268 IDEI 271


>gi|171186306|ref|YP_001795225.1| peptidase S49 [Thermoproteus neutrophilus V24Sta]
 gi|170935518|gb|ACB40779.1| peptidase S49 [Thermoproteus neutrophilus V24Sta]
          Length = 550

 Score = 45.6 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 62/197 (31%), Gaps = 38/197 (19%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
             + G         +   L+ L        + L INSPGG V+   A+Y  ++ +     
Sbjct: 51  FVIGGPET----DRVVKALVELSQRRDVAGVILIINSPGGTVSGTEALYTALRGLNKTKY 106

Query: 105 TFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG-----QASDIERHAQDIV 159
              +G  AS       A E+   +A P++ +                 A D       + 
Sbjct: 107 AVVVGLGASGAYYTAVAAERI--YAAPSSWVGSIGVVAVIWPDLYLYDAGDYVYTTGPLK 164

Query: 160 KIKRRLNEIYVKNCGKTYEEVEKTL-------DRDHI------------MSASEACDWGV 200
                L   Y        E++ +          R  I             +A EA   G+
Sbjct: 165 YYGEDLLSYY-----DDVEKIRQNFVKAVLEGRRGRIKANPAVFETAGLFTAEEALRLGL 219

Query: 201 VDK---VLMSRIDIEEK 214
           VDK   VL +  D+ E+
Sbjct: 220 VDKVGGVLDAARDMAEE 236


>gi|257126290|ref|YP_003164404.1| signal peptide peptidase SppA, 36K type [Leptotrichia buccalis
           C-1013-b]
 gi|257050229|gb|ACV39413.1| signal peptide peptidase SppA, 36K type [Leptotrichia buccalis
           C-1013-b]
          Length = 549

 Score = 45.6 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 81/212 (38%), Gaps = 29/212 (13%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
            +V   ++ E++ D  + +  E ++ +    ++     +C +L  L+     K + L IN
Sbjct: 270 YIVMTKDKKEKAKDTIAVINLEGVIDMKNPNKNITYDNVCEKLEELKEIKNLKGLVLRIN 329

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK------------GMRF 128
           SPGG       IY  ++ +  PI        AS G  + + G+K            G+  
Sbjct: 330 SPGGSALVSEKIYKKLKKLTVPIYVSMGDLCASGGYYIATTGKKLFANNFTLTGSIGVVM 389

Query: 129 ALPNARILLH----QPSGGFSGQASDIERHAQDI-----VKIKRRLNEIYVKNC------ 173
             P     +        G   G   D+    +++      K+   +NE+Y +        
Sbjct: 390 MYPEVVGTMKKLDVNLEGFGKGAGFDMLNPFEELGEDSKEKLIHNMNEVYGEFKEHVMVA 449

Query: 174 -GKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            G   EE+EK       +  SEA +  +VD++
Sbjct: 450 RGMNDEELEKIAQGRVWL-GSEAKNINLVDEI 480


>gi|147918877|ref|YP_687397.1| putative protease IV [uncultured methanogenic archaeon RC-I]
 gi|110622793|emb|CAJ38071.1| putative protease IV [uncultured methanogenic archaeon RC-I]
          Length = 299

 Score = 45.6 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 64/183 (34%), Gaps = 31/183 (16%)

Query: 52  EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP--PISTFCMG 109
               ++ +   +    A++  K I L +NSPGG   A   I   +   K   P+      
Sbjct: 85  GAAFSSEVVRAIRKATADDSIKAIVLRVNSPGGTPVAAEEIIAQINRTKAKKPVIVSMGD 144

Query: 110 QAASMGSLLLSAGEK------------GMRFALPNARILLHQPSGGFS----GQASDIER 153
            A S    + ++ +K            G+ +   N     ++    F     G   D+  
Sbjct: 145 SATSAAYYVSASADKIFANPDTFTGSIGVIWVFKNKTRYYNEEGINFYIAKSGNYKDVGA 204

Query: 154 HAQDIV-----KIKRRLNEIYVKN-----CGK--TYEEVEKTLDRDHIMSASEACDWGVV 201
             + +       I+  +NE Y +       G+     ++    D   +M+ + A   G+V
Sbjct: 205 DWRGLSENEKSYIQSIINESYERFVTAVATGRNLPENQIRAIAD-GRVMTGTSAKSMGLV 263

Query: 202 DKV 204
           D++
Sbjct: 264 DEI 266


>gi|282599624|ref|ZP_05971253.2| signal peptide peptidase SppA [Providencia rustigianii DSM 4541]
 gi|282567989|gb|EFB73524.1| signal peptide peptidase SppA [Providencia rustigianii DSM 4541]
          Length = 635

 Score = 45.6 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 64/190 (33%), Gaps = 33/190 (17%)

Query: 46  FVTGQIEDHMA--TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM---QFIK 100
            + G     +A    I AQ+      +  K I L +NSPGG V+A   I + +   +   
Sbjct: 357 IMDGPQTPGIAGGETIAAQIRDARLNDDIKAIVLRVNSPGGSVSASDLIRNELAAAKASG 416

Query: 101 PPISTFCMGQAAS------------MGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQA 148
            P+     G AAS            + S     G  G+   +      L        G +
Sbjct: 417 KPVVVSMGGMAASGGYWISTPADYIIASPSTLTGSIGIFGVINTFENSLESIGVYTDGVS 476

Query: 149 S----DIE----RHAQDIVKIKRRLNEIYVKNCG-------KTYEEVEKTLDRDHIMSAS 193
           +    DI        +    ++  +   Y    G       KT  E++K        +  
Sbjct: 477 TSPLADISLTKGISPEFADMMQITIENGYETFIGLVAKSRNKTPAEIDKIAQGRVW-TGQ 535

Query: 194 EACDWGVVDK 203
           +A + G+VDK
Sbjct: 536 DALNIGLVDK 545


>gi|163747434|ref|ZP_02154786.1| periplasmic protein-like protein [Oceanibulbus indolifex HEL-45]
 gi|161379287|gb|EDQ03704.1| periplasmic protein-like protein [Oceanibulbus indolifex HEL-45]
          Length = 258

 Score = 45.6 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 70/176 (39%), Gaps = 32/176 (18%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           R   + G IE   A  I  QL  L     +    LY+NSPGG V   + +   ++     
Sbjct: 100 RAALLEGAIEAGDAERIVKQLSELTPAPEE----LYLNSPGGSVRDALELGRYLRREGFN 155

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS---------DIER 153
            +        S    LL+AGE   R    +A + +HQ    + G+++         DI+R
Sbjct: 156 TTLRDGDICYSACPYLLAAGET--RKVPDSASVGVHQ---HYFGKSTLLPAFVAVEDIQR 210

Query: 154 HAQDIVKIKRRL--NEIYVKN---CGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
              ++++    +  + + +++        +E+       +++   E   +G + +V
Sbjct: 211 GQGEVMRYLDDMGIDPLVMQHALVT--PPDEI-------YVLLPEELRRYGFIPEV 257


>gi|14520866|ref|NP_126341.1| nodulation protein nfed [Pyrococcus abyssi GE5]
 gi|5458083|emb|CAB49572.1| nfeD nodulation protein homolog, probable membrane protein
           [Pyrococcus abyssi GE5]
          Length = 440

 Score = 45.6 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 60/149 (40%), Gaps = 15/149 (10%)

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM---GQAASMGSLLLSAGEKG 125
           EN  + I +  ++PGG   A M I   +Q  K P+  +       AAS G+ +       
Sbjct: 50  ENNAEAIIIEFDTPGGRADAMMNIIQRIQQSKVPVIIYVYPPGATAASAGTYIALGSH-- 107

Query: 126 MRFALPNARILLHQPSGGFSGQASDIE----RHAQDIVKIKRRLNEIYVKNCGKTYEEVE 181
           +    P   I   +P  G+S   S IE         I  IK        +  G+     E
Sbjct: 108 LIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNHFIAYIKS-----LAQESGRNETIAE 162

Query: 182 KTLDRDHIMSASEACDWGVVDKVLMSRID 210
           + + +D  ++  EA  +GV+ +V+   ++
Sbjct: 163 EFITKDLSLTPEEALKYGVI-EVIARDVN 190


>gi|261418196|ref|YP_003251878.1| signal peptide peptidase SppA, 36K type [Geobacillus sp. Y412MC61]
 gi|319767844|ref|YP_004133345.1| signal peptide peptidase SppA, 36K type [Geobacillus sp. Y412MC52]
 gi|261374653|gb|ACX77396.1| signal peptide peptidase SppA, 36K type [Geobacillus sp. Y412MC61]
 gi|317112710|gb|ADU95202.1| signal peptide peptidase SppA, 36K type [Geobacillus sp. Y412MC52]
          Length = 335

 Score = 45.6 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 46/177 (25%), Positives = 68/177 (38%), Gaps = 38/177 (21%)

Query: 62  QLLFLEAENPQ-KEISLYINSPGGVVTAGMAIYDTMQFIK----PPISTFCMGQAASMGS 116
           Q++    E+   K I L INSPGG V     IYD +  +K     PI       AAS G 
Sbjct: 93  QMIKQAKEDQDVKAIILRINSPGGGVAESAEIYDQLMKLKKKTNKPIYVSMGAMAASGGY 152

Query: 117 LLLSAGEKGMRFALP---NARILLHQPSGGFSGQA---------------SDIERHAQDI 158
            + +AG+K   FA P      I +   S  + G A                DI   A+ +
Sbjct: 153 YIAAAGDKI--FASPETITGSIGVIMQSVNYEGLAKKYGVELVTIKSGPYKDIMNPARKM 210

Query: 159 VK-----IKRRLNEIY-------VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            +     ++R +N+ Y        K      + V K  D   I    +A +  +VD+
Sbjct: 211 TEAEREILQRLINDSYDAFVDVVAKGRKLPEDTVRKLAD-GRIYDGRQAKELRLVDE 266


>gi|257067187|ref|YP_003153443.1| signal peptide peptidase SppA, 36K type [Anaerococcus prevotii DSM
           20548]
 gi|256799067|gb|ACV29722.1| signal peptide peptidase SppA, 36K type [Anaerococcus prevotii DSM
           20548]
          Length = 327

 Score = 45.6 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 72/196 (36%), Gaps = 33/196 (16%)

Query: 41  KERIVFVTGQIEDHMATL-ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           K ++V V G I  + A   +  +L   + +   K + L +NSPGG V A   I + ++ +
Sbjct: 62  KIKVVDVDGVISSNDANDFVVEELKNAKEDPLVKGVILNVNSPGGSVYASERIANQIKAL 121

Query: 100 K---PPISTFCMGQAASMGSLLLS---------------AGEKGMRFALP--------NA 133
           K    P+ T     AAS G  + +                G     ++L           
Sbjct: 122 KEAEKPVYTVMGEMAASGGYYISALTDRIYASNETWTGSIGVIIQSYSLQGLFEKYGIKE 181

Query: 134 RILLHQPSGGFSGQASDIERHAQD-----IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
           + +          Q  D+ +  ++     +     R  +I  +  G +  EV K  D   
Sbjct: 182 QNITTGKMKDAGSQGRDMSKEEKEYFQGLVDSAFDRFVKIVAEGRGLSEREVRKLADGRV 241

Query: 189 IMSASEACDWGVVDKV 204
               S+A   G+VDK+
Sbjct: 242 Y-DGSQALANGLVDKI 256


>gi|197106190|ref|YP_002131567.1| signal peptide peptidase SppA [Phenylobacterium zucineum HLK1]
 gi|196479610|gb|ACG79138.1| signal peptide peptidase SppA [Phenylobacterium zucineum HLK1]
          Length = 590

 Score = 45.6 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 57/163 (34%), Gaps = 33/163 (20%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKP---PISTFCMGQAASMGSLLL---------- 119
           K I L +NSPGG  TA   I D ++  K    P+       AAS G  +           
Sbjct: 341 KAIVLRVNSPGGSDTASEQILDAVRAAKAKGKPVVVSMSSYAASGGYWIASEASAIVAQP 400

Query: 120 --------------SAGEKGMRFALPNARILLHQPSGGFSG-----QASDIERHAQDIVK 160
                         + G+   RF +   +  +  P  G         A      ++ + +
Sbjct: 401 TTLTGSIGVFGGKFALGDALARFGVDVRQTDVGGPYTGAFNLAEPFTAPQRAAFSRWMDR 460

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
           I     E   +      E V + + R  + + ++A + G+VD+
Sbjct: 461 IYANFLERVARGRNLPPERVAE-IARGRVWTGAQARELGLVDE 502


>gi|56963436|ref|YP_175167.1| hypothetical protein ABC1671 [Bacillus clausii KSM-K16]
 gi|56909679|dbj|BAD64206.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
          Length = 454

 Score = 45.2 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 3/94 (3%)

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           EN    I L IN+PGG V A   I + +     P++ F   +A S G+ +    ++    
Sbjct: 61  ENGADHIILNINTPGGAVDAAGHIANIINSTDIPVTAFINSEAISAGAYIALNADEI--I 118

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIK 162
            +PN +I       G  G A++ +  +  I ++K
Sbjct: 119 MVPNGQIGSAGVIDGA-GNAAEEKTQSLWISRMK 151


>gi|21233189|ref|NP_639106.1| protease IV [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66770130|ref|YP_244892.1| protease IV [Xanthomonas campestris pv. campestris str. 8004]
 gi|188993338|ref|YP_001905348.1| protease IV [Xanthomonas campestris pv. campestris str. B100]
 gi|21115040|gb|AAM43018.1| protease IV [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66575462|gb|AAY50872.1| protease IV [Xanthomonas campestris pv. campestris str. 8004]
 gi|167735098|emb|CAP53310.1| protease IV [Xanthomonas campestris pv. campestris]
          Length = 633

 Score = 45.2 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 60/161 (37%), Gaps = 32/161 (19%)

Query: 73  KEISLYINSPGGVVTAGMAIYD---TMQFIKPPISTFCMGQAASMGSLLLSA-------- 121
           K + L ++SPGG V A   I      ++    P+       AAS G  +           
Sbjct: 374 KAVVLRVDSPGGEVFASEQIRREVVALKQAGKPVVVSMGDLAASGGYWISMNADRIYADP 433

Query: 122 ----GEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK---------IKRRLNEI 168
               G  G+   +PN    L +      G  +     A DI +         I+  +N+ 
Sbjct: 434 STISGSIGIFGMVPNLTRALDKIGVHTDGVGTTRFAGAFDITRPLDPAAGQVIQAVINKG 493

Query: 169 YVKNCG-------KTYEEVEKTLDRDHIMSASEACDWGVVD 202
           Y    G       ++ E ++K + R  + S ++A D G+VD
Sbjct: 494 YADFTGKVAQARHQSVEAIDK-VARGRVWSGAQAKDHGLVD 533


>gi|262039550|ref|ZP_06012849.1| protease IV [Leptotrichia goodfellowii F0264]
 gi|261746428|gb|EEY33968.1| protease IV [Leptotrichia goodfellowii F0264]
          Length = 549

 Score = 45.2 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 73/196 (37%), Gaps = 36/196 (18%)

Query: 44  IVFVTGQIEDHMATLI-------CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           I+ + G IE   +  +       C +L  LE     K + L INSPGG       I+  +
Sbjct: 286 IINLEGIIEPKKSNKVNITYKNVCEKLDKLEDIKNLKGLVLRINSPGGSALESEKIHQKL 345

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEK------------GMRFALPNARILLHQPSGGF 144
           + +  PI        AS G  + SAG+K            G+    P     L++     
Sbjct: 346 KKLDVPIYISMGDVCASGGYYIASAGKKIFADSMTLTGSIGVVLMYPELSETLNKIDVNI 405

Query: 145 SGQAS----DIERHAQDI-----VKIKRRLNEIYVKNCGK-------TYEEVEKTLDRDH 188
            G       DI    + +      KI   +NE+Y +           + EE+EK      
Sbjct: 406 EGFEKGKGFDIFNIFETLSEESKEKIIHTMNEVYSEFKSHVIAAREMSEEELEKIAGGRV 465

Query: 189 IMSASEACDWGVVDKV 204
            +  SEA +  ++D++
Sbjct: 466 WL-GSEAVNINLIDEI 480


>gi|317048414|ref|YP_004116062.1| signal peptide peptidase SppA, 67K type [Pantoea sp. At-9b]
 gi|316950031|gb|ADU69506.1| signal peptide peptidase SppA, 67K type [Pantoea sp. At-9b]
          Length = 618

 Score = 45.2 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 58/177 (32%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP---PISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA  AI + +        P+     G AA
Sbjct: 349 GDTTAAQIRDARLDPKIKAIILRVNSPGGSVTASEAIREELAAAHAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DI----- 151
           S G  + +             G  G+   +      L        G A+    D+     
Sbjct: 409 SGGYWISTPADYIVANPSTLTGSIGIFGVINTVENSLSTIGVHTDGVATSPLADVATTKA 468

Query: 152 ------ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
                 +     I    R    +   +  KT E++ +        + S+A   G+VD
Sbjct: 469 LPTEVQQLMQLTIENGYRNFVGLVAASRHKTPEQINEIAQGHVW-TGSDAKANGLVD 524


>gi|296116410|ref|ZP_06835024.1| signal peptide peptidase SppA, 36K type [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295977003|gb|EFG83767.1| signal peptide peptidase SppA, 36K type [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 314

 Score = 45.2 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 69/191 (36%), Gaps = 34/191 (17%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI--KPP 102
           + + G +       + A +    +    K + L IN+PGG VT G  ++D +     + P
Sbjct: 55  LRIDGVVGSDTTDTL-ALIRRARSNPAVKGMLLDINTPGGAVTGGETLHDAIAEFARQKP 113

Query: 103 ISTFCMGQAASMGSLLL------------SAGEKGMRFALPNARILL--------HQPSG 142
           ++      AAS G ++               G  G+    P+   LL           SG
Sbjct: 114 VAVSMGSLAASAGYMIAVPAQRLFAHHSTLTGSIGVIMQAPDVSGLLDKVGVRVDQLVSG 173

Query: 143 GFSGQASDI--------ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD-RDHIMSAS 193
              GQ S +        E     I  +      +  +      E+V +  D R +  + S
Sbjct: 174 PMKGQPSAVQPLSPQGREMLQGVIADLYDMFVTMVAQGRHLPREKVLELADGRPY--TGS 231

Query: 194 EACDWGVVDKV 204
           +A   G+VD++
Sbjct: 232 QALSLGLVDQI 242


>gi|254410663|ref|ZP_05024442.1| signal peptide peptidase SppA, 67K type [Microcoleus chthonoplastes
           PCC 7420]
 gi|196182869|gb|EDX77854.1| signal peptide peptidase SppA, 67K type [Microcoleus chthonoplastes
           PCC 7420]
          Length = 593

 Score = 45.2 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 68/181 (37%), Gaps = 35/181 (19%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ--FIKPPISTFCMGQAAS 113
                AQ+  L  ++  K + L +NSPGG  TA   I   ++      P+       AAS
Sbjct: 329 GESFAAQMRKLRLDDSVKAVVLRVNSPGGSATASEIIQREVKLTRDSKPVIISMGDIAAS 388

Query: 114 MGSLLLSAGEKGMRFALPNAR---------ILLHQPSGGFSGQASDIE------------ 152
            G  + + G +   FA PN           ++  Q     +G   D+             
Sbjct: 389 GGYWISTYGNRI--FAEPNTVTGSIGVFGLLMNVQQIANENGITWDVVKTGRFADTQTVS 446

Query: 153 --RHAQDIVKIKRRLNEIYVKNCGK-------TYEEVEKTLDRDHIMSASEACDWGVVDK 203
             +  Q++  I++ ++++Y K   K         ++V +        S  +A   G+VD+
Sbjct: 447 RPKTTQELALIQKIVDQVYSKFLDKVAESRKLPKDKVAQIAQGRVW-SGIDAKQLGLVDE 505

Query: 204 V 204
           +
Sbjct: 506 I 506


>gi|154494952|ref|ZP_02033957.1| hypothetical protein PARMER_03998 [Parabacteroides merdae ATCC
           43184]
 gi|154085502|gb|EDN84547.1| hypothetical protein PARMER_03998 [Parabacteroides merdae ATCC
           43184]
          Length = 460

 Score = 45.2 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 57/161 (35%), Gaps = 33/161 (20%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR--------- 127
           +++N+ GG V A  ++   + +   P+  F    AAS G+L+  A +K            
Sbjct: 64  IHMNTYGGQVDAADSMRTAILYNPIPVYVFIDNNAASAGALISIACKKIYMRKGANIGAA 123

Query: 128 -FALPNARIL----------LHQPSGGFSGQASDIERHAQDIVKIKR--RLNEIYVKNCG 174
               P    +          + + +    GQ + I +    + K KR   + E  V    
Sbjct: 124 TVVNPTGEAMPDKYQSYMRSMMRSTAEAHGQDT-IVQKNDTLYKWKRDPLIAEAMVD--- 179

Query: 175 KTYEEVE----KTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
              E V         +    +A EA  WG  D +  +  ++
Sbjct: 180 ---ERVAIPNLIDTGKVLTFTAQEAQKWGYCDGIAENPDEV 217


>gi|218262799|ref|ZP_03477157.1| hypothetical protein PRABACTJOHN_02837 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223131|gb|EEC95781.1| hypothetical protein PRABACTJOHN_02837 [Parabacteroides johnsonii
           DSM 18315]
          Length = 460

 Score = 45.2 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 59/161 (36%), Gaps = 33/161 (20%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR--------- 127
           +++N+ GG V A  ++   + +   P+  F    AAS G+L+  A +K            
Sbjct: 64  IHMNTYGGQVDAADSMRTAILYNSIPVYVFIDNNAASAGALISIACKKIYMRKGANIGAA 123

Query: 128 -------FALPNARI----LLHQPSGGFSGQASDIERHAQDIVKIKR--RLNEIYVKNCG 174
                   A+P+        + + +    GQ + I +    + K KR   + E  V    
Sbjct: 124 TVVNQTGAAMPDKYQSYMRSMMRSTAEAHGQDT-IIQKNDTLYKWKRDPLIAEAMVD--- 179

Query: 175 KTYEEVE----KTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
              E V         +    +A EA  WG  D +  +  ++
Sbjct: 180 ---ERVAIPNLIDTGKVLTFTAQEAQKWGYCDGIAENPDEV 217


>gi|166032602|ref|ZP_02235431.1| hypothetical protein DORFOR_02317 [Dorea formicigenerans ATCC
           27755]
 gi|166026959|gb|EDR45716.1| hypothetical protein DORFOR_02317 [Dorea formicigenerans ATCC
           27755]
          Length = 325

 Score = 45.2 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 61/178 (34%), Gaps = 29/178 (16%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK----PPISTFCMGQAA 112
                 +  L  ++  K I LY++SPGG V     ++D +   K     PI T+    AA
Sbjct: 83  NTTMDYIDNLMDDSDNKGILLYVDSPGGAVYESEELHDKLIEYKETTGRPIWTYMAHYAA 142

Query: 113 SMGSLLLSAGEKGM-----------RFALPNARILLHQPSGG-----FSGQASD------ 150
           S G +    G+K                       L++  G       SG   D      
Sbjct: 143 SGGYMTSVTGDKIYANKNTVTGSIGVIMSGYDMSGLYEKLGIRYVSITSGVNKDSSKLTD 202

Query: 151 --IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             +  +   + +  +    I       + ++V+   D     +A +A   G++D++  
Sbjct: 203 EQVAIYQSQVDECYQEFVNIVADGRDMSADQVKALADGRTY-TAKQAKANGLIDEIAT 259


>gi|253688357|ref|YP_003017547.1| signal peptide peptidase SppA, 67K type [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251754935|gb|ACT13011.1| signal peptide peptidase SppA, 67K type [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 616

 Score = 45.2 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 65/191 (34%), Gaps = 33/191 (17%)

Query: 46  FVTGQIEDHM--ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD---TMQFIK 100
            + G     M       AQ+     +   K + L +NSPGG VTA   I      ++   
Sbjct: 335 IIDGPETPGMVGGDTTAAQIRAARLDPKVKALVLRVNSPGGSVTASELIRSELMALRLAG 394

Query: 101 PPISTFCMGQAASMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQA 148
            PI     G AAS G  + +             G  G+   +      L        G A
Sbjct: 395 KPIVVSMGGMAASGGYWISTPANAIISSASTLTGSIGIFGVITTFENSLESLGVHTDGVA 454

Query: 149 S----DIERHAQD-----------IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           +    D+                 I +  +   +I  +   KT E++++       +  S
Sbjct: 455 TSPLADLSITKSLPPEFSQMMQLSIERGYKNFIDIVAQARKKTPEQIDQIAQGHVWV-GS 513

Query: 194 EACDWGVVDKV 204
           +A + G+VD++
Sbjct: 514 DAKENGLVDQI 524


>gi|20807332|ref|NP_622503.1| periplasmic serine protease (ClpP class) [Thermoanaerobacter
           tengcongensis MB4]
 gi|20515846|gb|AAM24107.1| Periplasmic serine proteases (ClpP class) [Thermoanaerobacter
           tengcongensis MB4]
          Length = 305

 Score = 45.2 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 58/175 (33%), Gaps = 32/175 (18%)

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK---PPISTFCMGQAASMGS 116
             Q+   + +N  K I + INSPGG     + IY  ++ +K     +       AAS G 
Sbjct: 67  VEQIRRAQEDNTVKAIVVKINSPGGSAAKSVEIYTELKRLKETGKKVIVSMGDAAASGGY 126

Query: 117 LLLSAGEK------------GMRFALPNARILLHQ-----------PSGGFSGQASDI-- 151
           +    G+             G+     N   L  +           P         D+  
Sbjct: 127 MAACGGDIIVANPATITGSIGVIMQYTNYEGLYDKLGLKEITIKSGPYKDMGSPTRDLTP 186

Query: 152 ---ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
              +     I     +  EI  +      E+V++  D   I +  +A   G+VDK
Sbjct: 187 EEKKILQGIIDDTYEQFVEIVSEGRKMPIEKVKELAD-GRIFTGRQALKVGLVDK 240


>gi|325262473|ref|ZP_08129210.1| peptidase, U7 family [Clostridium sp. D5]
 gi|324032305|gb|EGB93583.1| peptidase, U7 family [Clostridium sp. D5]
          Length = 335

 Score = 44.9 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 59/168 (35%), Gaps = 31/168 (18%)

Query: 66  LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK----PPISTFCMGQAASMGSLLLSA 121
           +  +     I L ++SPGG    G+ +YD +   +     P+ T+     AS    + + 
Sbjct: 100 MMYDPNNSGILLDVDSPGGTTYEGVELYDKIVEYRDATGRPVWTYMNHYGASAAYYIAAP 159

Query: 122 GE-----KGMRFALPNARILLHQPSGGFS-----------GQASDI--------ERHAQD 157
            +     K          +  +  SG +            G   D+        E +   
Sbjct: 160 SDRIGANKSTMTGSIGVIMSGYDLSGLYEKLGIKYYSVTTGDNKDMSSPNEEQLEIYQDI 219

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLD-RDHIMSASEACDWGVVDKV 204
           I +   R      +  G   + V +  D R +  SA +A D G++D++
Sbjct: 220 IAEEYDRFVGAVAEGRGMPDKAVRELADGRPY--SAQQAVDNGLIDEI 265


>gi|18977905|ref|NP_579262.1| nodulation protein nfeD [Pyrococcus furiosus DSM 3638]
 gi|18893669|gb|AAL81657.1| nodulation protein nfeD [Pyrococcus furiosus DSM 3638]
          Length = 447

 Score = 44.9 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 7/141 (4%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM---GQAASMGSLLLSAGEKGMRFA 129
           + I + +++PGG   A M I   +Q  K P+  +       AAS G+ +       +   
Sbjct: 60  RAIIIELDTPGGRGDAMMEIIQRIQQAKVPVIIYVYPPGASAASAGTYIALGAH--LIAM 117

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189
            P   I   +P  G+S   S I      IV       +   +  G+     EK +  D  
Sbjct: 118 APGTSIGACRPILGYSQNGS-IVEAPPKIVNHYIAYIKSLAEESGRNATIAEKFITEDLS 176

Query: 190 MSASEACDWGVVDKVLMSRID 210
           ++  EA  +GV+ +V+   +D
Sbjct: 177 LTPEEALKYGVI-EVIARDVD 196


>gi|325283414|ref|YP_004255955.1| peptidase S49 [Deinococcus proteolyticus MRP]
 gi|324315223|gb|ADY26338.1| peptidase S49 [Deinococcus proteolyticus MRP]
          Length = 534

 Score = 44.9 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 61/178 (34%), Gaps = 34/178 (19%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAAS-- 113
           +  + A L   + +     I LY+NS GG   A   I+  +Q  + P+       AAS  
Sbjct: 292 SDTVVAALRHAKEDRTTAAIVLYVNSGGGSALASDLIWREVQTSEKPVVAVMGAFAASGG 351

Query: 114 ----------MGSLLLSAGEKGMRFALPNAR------------------ILLHQPSGGFS 145
                     + S     G  G+    P                     ++ H       
Sbjct: 352 YYVLAAADRVIASPYSMTGSIGVVAGRPITEEFNRRHGLNPEQLGREEALMFHSSHPLTE 411

Query: 146 GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            Q   + R   +      R  +   +  G + E+V++ L R  I S ++A + G+VD+
Sbjct: 412 RQRDYLRRAIAETY---ARFVDRVAQGRGLSTEQVDE-LGRGRIWSGADALERGLVDE 465


>gi|224536205|ref|ZP_03676744.1| hypothetical protein BACCELL_01072 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522189|gb|EEF91294.1| hypothetical protein BACCELL_01072 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 589

 Score = 44.9 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 68/185 (36%), Gaps = 31/185 (16%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP--PISTF 106
           G  +   +  +   L  L+ +   K + L +NSPGG       I+  +  +K   P+   
Sbjct: 323 GSEDGINSDKVIRDLRKLKDDKDVKAVVLRVNSPGGSAFGSEQIWYAVTELKKEKPVIVS 382

Query: 107 CMGQAASMGSLLLSA------------GEKGMRFALPNARILLHQPSGGF----SGQASD 150
               AAS G  +               G  G+    PN + L  +    F    +   +D
Sbjct: 383 MGDYAASGGYYISCNADSIVADPTTLTGSIGIFGMFPNVKGLTDKIGLSFDVVKTNTYAD 442

Query: 151 IERHAQ--------DIVKIKRRLNEIYVKNC----GKTYEEVEKTLDRDHIMSASEACDW 198
                +         +  +     E++VK C    G T +E++K  +     + ++A + 
Sbjct: 443 FGAMGRPLNDGEKALMQNMVNEGYELFVKRCAEGRGMTTDEIKKIAEGRVW-TGTKAKEL 501

Query: 199 GVVDK 203
           G+VD+
Sbjct: 502 GLVDE 506


>gi|299822749|ref|ZP_07054635.1| signal peptide peptidase SppA [Listeria grayi DSM 20601]
 gi|299816278|gb|EFI83516.1| signal peptide peptidase SppA [Listeria grayi DSM 20601]
          Length = 338

 Score = 44.9 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 70/177 (39%), Gaps = 35/177 (19%)

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM----QFIKPPISTFCMGQAASMG 115
             QL  +EA+   K I +Y+NSPGG V     I D +    +  K P+       AAS G
Sbjct: 94  MRQLKQIEADKSVKGILMYVNSPGGGVMESAQIRDKLLEIKKKRKLPVYVSMGSMAASGG 153

Query: 116 SLLLSAGEK-----------------GMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
             + +A +K                 G  ++    ++ +       SG   DI   ++ +
Sbjct: 154 YYISTAADKIFASKETLTGSLGVIMQGYDYSGLMKKVGISDN-TIKSGAHKDIMSSSRPM 212

Query: 159 VK-----IKRRLNEIYVKN-----CGK--TYEEVEKTLDRDHIMSASEACDWGVVDK 203
            K     +++ +N+ Y +       G+  + E+V K  D        +A   G++D+
Sbjct: 213 TKEEKKIMQQMINDSYDEFVNVIATGRHMSKEKVRKIADGRVY-DGRQAKKIGLIDQ 268


>gi|169832316|ref|YP_001718298.1| signal peptide peptidase SppA, 36K type [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169639160|gb|ACA60666.1| signal peptide peptidase SppA, 36K type [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 299

 Score = 44.9 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 60/200 (30%), Gaps = 36/200 (18%)

Query: 39  LLKERIVFVTGQIEDHM----ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD 94
           L++   + + G          A  I AQ+         + + L +NSPGG   A   I +
Sbjct: 42  LIRIEGMIIGGTEGSFFGLGGAEEITAQIQEAADNPNIRAVVLRLNSPGGSAAASQEISE 101

Query: 95  T---MQFIKPPISTFCMGQAASMGSLLLS------------AGEKGMRFALPNARILLHQ 139
               ++    P+       +AS    +               G  G+     +   L   
Sbjct: 102 AVVRLREAGKPVVVSMGDTSASGAYWIACHADAIVANPATITGSIGVIIQTTHLTDLYDM 161

Query: 140 ----PSGGFSGQASDI------------ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
                    SG   D+                  +  I  +   +  +      ++V K 
Sbjct: 162 LGIETETFKSGPHKDMGSPDRVPTPEERAIFQGMVDDIYAQFVAVVARGRNMPEDQVRKL 221

Query: 184 LDRDHIMSASEACDWGVVDK 203
            D   I +  +A + G+VD+
Sbjct: 222 AD-GRIFTGRQAYELGLVDQ 240


>gi|254478286|ref|ZP_05091666.1| signal peptide peptidase SppA, 36K type [Carboxydibrachium
           pacificum DSM 12653]
 gi|214035751|gb|EEB76445.1| signal peptide peptidase SppA, 36K type [Carboxydibrachium
           pacificum DSM 12653]
          Length = 306

 Score = 44.9 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 58/182 (31%), Gaps = 32/182 (17%)

Query: 53  DHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK---PPISTFCMG 109
               +    Q+   + +N  K + + INSPGG     + IY  ++ +K     +      
Sbjct: 61  PQFTSDPVEQIRRAQEDNTVKAVVVKINSPGGSAAKSVEIYTELKRLKETGKKVIVSMGD 120

Query: 110 QAASMGSLLLSAGEK------------GMRFALPNARILLHQ-----------PSGGFSG 146
            AAS G +    G+             G+     N   L  +           P      
Sbjct: 121 AAASGGYMAACGGDIIVANPATITGSIGVIMQYTNYEGLYDKLGLKEITIKSGPYKDMGS 180

Query: 147 QASDI-----ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
              D+           I     +  EI  +      E+V++  D   I +  +A   G+V
Sbjct: 181 PTRDLTPEEKRILQGIIDDTYEQFVEIVSEGRKMPIEKVKELAD-GRIFTGRQALKVGLV 239

Query: 202 DK 203
           DK
Sbjct: 240 DK 241


>gi|158335227|ref|YP_001516399.1| signal peptide peptidase SppA, 36K type [Acaryochloris marina
           MBIC11017]
 gi|158305468|gb|ABW27085.1| signal peptide peptidase SppA, 36K type [Acaryochloris marina
           MBIC11017]
          Length = 315

 Score = 44.9 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 65/179 (36%), Gaps = 33/179 (18%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK-----------PPIS 104
           A  + + +     ++  K I L INSPGG   A  A+Y+ +   +             ++
Sbjct: 65  ANKLISNIKKAREDDGIKAILLRINSPGGTAAASQAVYEELMRTRKDTDIKIVASLGDVA 124

Query: 105 TFCMGQAASMGSLLLSA-----GEKGMRFALPNARILLH----QPSGGFSGQASDIERHA 155
                  AS    +++      G  G+     N   LL     Q +   SG   DI    
Sbjct: 125 ASGGYYIASAADHIVANPSSITGSIGVIVQTQNVTSLLDKVGVQTNTFTSGPLKDILSPF 184

Query: 156 QDIVKIKRRLNEIYVKNC------------GKTYEEVEKTLDRDHIMSASEACDWGVVD 202
           ++    +R++ +  V +             G   E+++   D   I + ++A D  +VD
Sbjct: 185 RETKPEERKILQSIVDDSYQQFLDAIVAGRGMPLEKLKPLAD-GRIYTGTQAKDNKLVD 242


>gi|222823269|ref|YP_002574842.1| protease IV [Campylobacter lari RM2100]
 gi|222538490|gb|ACM63591.1| protease IV [Campylobacter lari RM2100]
          Length = 297

 Score = 44.9 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 82/209 (39%), Gaps = 44/209 (21%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP--P 102
           + + G+I D  A+ +  Q+  L+ +N  K +  YI+SPGG     M I   +Q +K   P
Sbjct: 52  INLKGEIND--ASTLLEQIYKLKDDNAIKGVLFYIDSPGGAFAPSMEIALAIQDLKAKKP 109

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG-QASD----------- 150
           +  +  G  AS GS L + G       + N    +        G  AS+           
Sbjct: 110 VVAYAGGTIAS-GSYLSAVGAN---MIIANPASFVGSIGVIMQGFNASELAQKIGISDQT 165

Query: 151 ------------IERHAQDIVKIKRRL-NEIY-------VKNCGKTYEEVEKTLDRDHIM 190
                       + + +++  +  + L N+ Y        KN      + +   D    +
Sbjct: 166 IKAGTYKEAGTFMRKWSKEEKEFLQNLANQSYILFTNFVAKNRNLDLNQTKSWADAKVFL 225

Query: 191 SASEACDWGVVDKVLM---SRIDIEEKSK 216
            A+EA    ++DKV     ++ ++E+ +K
Sbjct: 226 -ANEALKLKLIDKVGNYELAKKEVEKLAK 253


>gi|293405264|ref|ZP_06649256.1| protease 4 [Escherichia coli FVEC1412]
 gi|298380907|ref|ZP_06990506.1| protease IV [Escherichia coli FVEC1302]
 gi|300898997|ref|ZP_07117286.1| signal peptide peptidase SppA [Escherichia coli MS 198-1]
 gi|291427472|gb|EFF00499.1| protease 4 [Escherichia coli FVEC1412]
 gi|298278349|gb|EFI19863.1| protease IV [Escherichia coli FVEC1302]
 gi|300357394|gb|EFJ73264.1| signal peptide peptidase SppA [Escherichia coli MS 198-1]
          Length = 666

 Score = 44.9 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 60/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM---QFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I   +   +    P+     G AA
Sbjct: 397 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARSAGKPVVVSMGGMAA 456

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 457 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 516

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 517 LPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 572


>gi|284921686|emb|CBG34758.1| protease IV [Escherichia coli 042]
          Length = 618

 Score = 44.9 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 60/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM---QFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I   +   +    P+     G AA
Sbjct: 349 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARSAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 409 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITKA 468

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 469 LPQEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 524


>gi|218705264|ref|YP_002412783.1| protease 4 [Escherichia coli UMN026]
 gi|218432361|emb|CAR13251.1| protease IV (signal peptide peptidase) [Escherichia coli UMN026]
          Length = 618

 Score = 44.9 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 60/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM---QFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I   +   +    P+     G AA
Sbjct: 349 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARSAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 409 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 468

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 469 LPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 524


>gi|254303887|ref|ZP_04971245.1| S49 family protease IV [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148324079|gb|EDK89329.1| S49 family protease IV [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 551

 Score = 44.5 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 71/195 (36%), Gaps = 36/195 (18%)

Query: 44  IVFVTGQIEDHMA-------TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           I+ + G+I+   +         +  +L  LE     K + L INSPGG       IY  +
Sbjct: 287 IINLEGEIDTRESKEANINYDNVIEKLDELEDIKNLKGLVLRINSPGGSALESEKIYQKL 346

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEK------------GMRFALPNARILLHQPSGGF 144
           + +  PI        AS G  + + G+K            G+    P     +++     
Sbjct: 347 KKLDIPIYISMGDLCASGGYYIATVGKKLFANSVTLTGSIGVVVLYPEFTEAINKLKVNM 406

Query: 145 SGQAS----DIERHAQDI-----VKIKRRLNEIYVKNC-------GKTYEEVEKTLDRDH 188
            G +     DI      +      KI   +NE+Y +           + E++EK      
Sbjct: 407 EGFSKGKGFDIFDVTSKLSKESKEKIIYSMNEVYNEFKEHVMKARNISEEDLEKIAGGRV 466

Query: 189 IMSASEACDWGVVDK 203
            +  S+A   G+VD+
Sbjct: 467 WL-GSQAKANGLVDE 480


>gi|160884948|ref|ZP_02065951.1| hypothetical protein BACOVA_02940 [Bacteroides ovatus ATCC 8483]
 gi|156109298|gb|EDO11043.1| hypothetical protein BACOVA_02940 [Bacteroides ovatus ATCC 8483]
          Length = 592

 Score = 44.5 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 70/189 (37%), Gaps = 33/189 (17%)

Query: 55  MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF--IKPPISTFCMGQAA 112
           + + +   L  L+  +  K + L +NSPGG   A   I+  ++    K P+       AA
Sbjct: 332 VGSKVIRDLRKLKDNDDVKAVVLRVNSPGGSAFASEQIWHAVKELKTKKPVIVSMGDYAA 391

Query: 113 SMGSLLLS------------AGEKGMRFALPNARILLHQPSGGF----SGQASDIERHAQ 156
           S G  +               G  G+   +PN + L  +    +    + + +D     +
Sbjct: 392 SGGYYISCVADTIVAEPTTLTGSIGIFGMIPNVKGLTDKIGLSYDVVKTNKYADFGNIMR 451

Query: 157 DIVKIKRRLNEIY------------VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
              + ++ L ++              +    T E +EK  +     +   A + G+VD++
Sbjct: 452 PFNEDEKSLLQMMITEGYDTFVTRCAEGRHMTKEAIEKIAEGRVW-TGETAKELGLVDEL 510

Query: 205 --LMSRIDI 211
             +   +DI
Sbjct: 511 GGIDKALDI 519


>gi|284102428|ref|ZP_06386046.1| signal peptide peptidase SppA (protease IV) [Candidatus
           Poribacteria sp. WGA-A3]
 gi|283830320|gb|EFC34553.1| signal peptide peptidase SppA (protease IV) [Candidatus
           Poribacteria sp. WGA-A3]
          Length = 322

 Score = 44.5 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 64/165 (38%), Gaps = 34/165 (20%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKP----PISTFCMGQAASMGSLLLSAGEK---- 124
           K I L I++PGG VTA   +Y  +Q +K     P+    M    S G  +  A ++    
Sbjct: 87  KAIVLRISTPGGTVTASDILYHEIQEMKKTRKVPVIASIMDLGTSGGYYVAMAADRVVAH 146

Query: 125 --------GMRFALPNARILLHQPS----GGFSGQASDIERHAQDIVKIKRRLNE----- 167
                   G+     NA  L+ +         SG   D+    + +    R + +     
Sbjct: 147 PSSVTGSLGVIMLTLNASGLMEKIGVRADAVMSGPHKDMGSPFRTMTDQDRAIFQGVIDS 206

Query: 168 IYVKNC-----GKT---YEEVEKTLDRDHIMSASEACDWGVVDKV 204
           +Y +       G+     E + +  D   I SA++A D G++D +
Sbjct: 207 LYARFLRVIEQGRPDLKPETIRQLAD-GRIYSATQAKDHGLIDGI 250


>gi|237722788|ref|ZP_04553269.1| protease IV [Bacteroides sp. 2_2_4]
 gi|293371818|ref|ZP_06618228.1| signal peptide peptidase SppA, 67K type [Bacteroides ovatus SD CMC
           3f]
 gi|229447310|gb|EEO53101.1| protease IV [Bacteroides sp. 2_2_4]
 gi|292633270|gb|EFF51841.1| signal peptide peptidase SppA, 67K type [Bacteroides ovatus SD CMC
           3f]
          Length = 592

 Score = 44.5 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 70/189 (37%), Gaps = 33/189 (17%)

Query: 55  MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF--IKPPISTFCMGQAA 112
           + + +   L  L+  +  K + L +NSPGG   A   I+  ++    K P+       AA
Sbjct: 332 VGSKVIRDLRKLKDNDDVKAVVLRVNSPGGSAFASEQIWHAVKELKTKKPVIVSMGDYAA 391

Query: 113 SMGSLLLS------------AGEKGMRFALPNARILLHQPSGGF----SGQASDIERHAQ 156
           S G  +               G  G+   +PN + L  +    +    + + +D     +
Sbjct: 392 SGGYYISCVADTIVAEPTTLTGSIGIFGMIPNVKGLTDKIGLSYDVVKTNKYADFGNIMR 451

Query: 157 DIVKIKRRLNEIY------------VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
              + ++ L ++              +    T E +EK  +     +   A + G+VD++
Sbjct: 452 PFNEDEKSLLQMMITEGYDTFVTRCAEGRHMTKEAIEKIAEGRVW-TGETAKELGLVDEL 510

Query: 205 --LMSRIDI 211
             +   +DI
Sbjct: 511 GGIDKALDI 519


>gi|313672173|ref|YP_004050284.1| signal peptide peptidase sppa, 36k type [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312938929|gb|ADR18121.1| signal peptide peptidase SppA, 36K type [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 284

 Score = 44.5 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 76/207 (36%), Gaps = 34/207 (16%)

Query: 41  KERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           K+ IV +  +     +  +  +L   E ++    + L INSPGG V     IY  ++ + 
Sbjct: 36  KKMIVLLDLEGIILESDTLIEKLKKYEKDSNVVGVILRINSPGGAVAPSQEIYRFIKRMS 95

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF---------------- 144
            P+       AAS G  + SA ++   +A+P            F                
Sbjct: 96  KPVYASMSTVAASGGYYVASACDRI--YAMPGTITGSIGVIMKFTDLSKIYDKIGVRTET 153

Query: 145 --SGQASDIERHAQDIVKIKRR-------------LNEIYVKNCGKTYEEVEKTLDRDHI 189
             SG+  DI    + + + ++              + +I  K      EE+ K  D   I
Sbjct: 154 IKSGKFKDIGSTTRSMTEEEKSILKQSVDDVYNQFIEDILSKRTFLNKEELLKYAD-GRI 212

Query: 190 MSASEACDWGVVDKVLMSRIDIEEKSK 216
           ++  EA +  +VDK+       E+  K
Sbjct: 213 ITGREAKNLKLVDKLGSYEDAYEDMKK 239


>gi|188586359|ref|YP_001917904.1| protein of unknown function DUF107 [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351046|gb|ACB85316.1| protein of unknown function DUF107 [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 462

 Score = 44.5 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 6/124 (4%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCM---GQAASMGSLLLSAGEKGMRFALPNA 133
           + +N+PGG+V A + I   +     P+ TF       AAS G+ +L +G        P +
Sbjct: 77  IVLNTPGGLVDATLDIMGKIVNSPIPVITFVSPSGAIAASAGTFILVSGHVA--AMTPGS 134

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
                 P     G+    E   + I  +   L  +  +  G+  E VEK +  +  ++AS
Sbjct: 135 TCGAAMPVTMQPGEEGTQEADQKTINFLAGHLKSV-AREQGRPEEVVEKFVTENLTLNAS 193

Query: 194 EACD 197
           EA +
Sbjct: 194 EALE 197


>gi|262068058|ref|ZP_06027670.1| protease IV [Fusobacterium periodonticum ATCC 33693]
 gi|291378237|gb|EFE85755.1| protease IV [Fusobacterium periodonticum ATCC 33693]
          Length = 551

 Score = 44.5 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 63/175 (36%), Gaps = 29/175 (16%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  +L  LE     K + L INSPGG       IY  ++ ++ PI        AS G 
Sbjct: 307 DNVVEKLDALEDIKNLKGLVLRINSPGGSALESEKIYQKLKKLEIPIYISMGDLCASGGY 366

Query: 117 LLLSAGEK------------GMRFALPNARILLHQPSGGFSGQAS----DIERHAQDI-- 158
            + + G+K            G+    P     + +      G +     DI      +  
Sbjct: 367 YIATVGKKLFASPVTLTGSIGVVILYPEFSEAIDKLKVNMEGFSKGKGFDIFDVFSKLSE 426

Query: 159 ---VKIKRRLNEIYVKNC-------GKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
               KI   +NE+Y +             E++EK       +  S+A + G+VD+
Sbjct: 427 ESKEKIVYSMNEVYSEFKAHVMEARNINEEDLEKIAGGRVWL-GSQAKENGLVDE 480


>gi|153809450|ref|ZP_01962118.1| hypothetical protein BACCAC_03765 [Bacteroides caccae ATCC 43185]
 gi|149127910|gb|EDM19132.1| hypothetical protein BACCAC_03765 [Bacteroides caccae ATCC 43185]
          Length = 592

 Score = 44.5 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 73/189 (38%), Gaps = 33/189 (17%)

Query: 55  MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF--IKPPISTFCMGQAA 112
           + + +   L  L+  +  K + L +NSPGG   A   I+  ++    K P+       AA
Sbjct: 332 VGSKVSRDLRKLKDNDDVKAVVLRVNSPGGSAFASEQIWHAVKELKTKKPVIVSMSDYAA 391

Query: 113 SMGSLLLS------------AGEKGMRFALPNARILLHQPSGGF----SGQASD---IER 153
           S G  +               G  G+   +PN + L  +    +    + + SD   I R
Sbjct: 392 SGGYYISCAADTIVAEPTTLTGSIGIFGMVPNVKGLTDKIGLTYDVVKTNKYSDFGNIMR 451

Query: 154 HAQDIVK--IKRRLNEIYVKNCGK-------TYEEVEKTLDRDHIMSASEACDWGVVDKV 204
              +  K  ++  + E Y    G+       T E +EK  +     +   A + G+VD++
Sbjct: 452 PFNEGEKALLQMTITEGYNTFIGRCAEGRHMTKEAIEKIAEGRVW-TGEAAKELGLVDEL 510

Query: 205 --LMSRIDI 211
             +   +DI
Sbjct: 511 GGIDKALDI 519


>gi|326789880|ref|YP_004307701.1| signal peptide peptidase SppA, 36K type [Clostridium lentocellum
           DSM 5427]
 gi|326540644|gb|ADZ82503.1| signal peptide peptidase SppA, 36K type [Clostridium lentocellum
           DSM 5427]
          Length = 315

 Score = 44.5 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 64/174 (36%), Gaps = 30/174 (17%)

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK----PPISTFCMGQAASMG 115
             ++  L  +   K I LY+NSPGG +     +Y  ++  K     P+  +    AAS G
Sbjct: 73  INRINELMYDKQNKGIFLYVNSPGGGIYESDELYLKLKEYKEVTERPVYAYMAQTAASGG 132

Query: 116 SLLLSAGEKGM--RFALPNARILLHQPSGGFSGQ------ASDI---------------- 151
             +  A +K    R  +  +  ++   +     Q        +I                
Sbjct: 133 LYVCMAADKIYANRMTMTGSIGVIMSMTDTTGLQELLGIKTENIVSGENKAMGNPLTDEQ 192

Query: 152 -ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            +     I +      ++  +N   T  +V++  D     SA +A D G++D+V
Sbjct: 193 RQILQTMIDESYNIFVDVVAENRSLTEAKVKELADGRVY-SALQAKDLGLIDEV 245


>gi|56421326|ref|YP_148644.1| protease [Geobacillus kaustophilus HTA426]
 gi|56381168|dbj|BAD77076.1| protease IV (signal peptide peptidase) [Geobacillus kaustophilus
           HTA426]
          Length = 335

 Score = 44.5 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 38/177 (21%)

Query: 62  QLLFLEAENPQ-KEISLYINSPGGVVTAGMAIYDTMQFIK----PPISTFCMGQAASMGS 116
           Q++    E+   K I L INSPGG V     IYD +  +K     PI       AAS G 
Sbjct: 93  QMIKQAKEDQDVKAIILRINSPGGGVAESAEIYDQLMKLKKKTNKPIYVSMGAMAASGGY 152

Query: 117 LLLSAGEKGMRFALP---NARILLHQPSGGFSGQA---------------SDIERHAQDI 158
            + +AG+K   FA P      I +   S  + G A                DI   A+ +
Sbjct: 153 YIAAAGDKI--FASPETITGSIGVIMQSVNYEGLAKKYGVELVTIKSGPYKDIMNPARKM 210

Query: 159 VKIKRRLNEIY------------VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            + +R++ +               K      + V K  D   I    +A    +VD+
Sbjct: 211 TEAERKILQRLINDSYDAFVDVVAKGRKLPEDTVRKLAD-GRIYDGRQAKALRLVDE 266


>gi|253582352|ref|ZP_04859575.1| protease IV [Fusobacterium varium ATCC 27725]
 gi|251835891|gb|EES64429.1| protease IV [Fusobacterium varium ATCC 27725]
          Length = 584

 Score = 44.5 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 85/240 (35%), Gaps = 48/240 (20%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFV----TGQIEDHMA 56
           +SFE      S+D  LG+            +  D  + +  E  +F+     G   +   
Sbjct: 287 LSFEDYNTFLSKDNILGITEN---------KKKDKIAVIYAEGTIFMDSTSGGISGNVTP 337

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP--PISTFCMGQAASM 114
            ++  ++     ++  K I L INSPGG   A   I + +       PI     G  AS 
Sbjct: 338 NVMIEEINKALKDDTVKGIVLRINSPGGSALAANIISNKIVEANGIKPIYVSIGGVGASG 397

Query: 115 GSLLLS------------AGEKGMRFALPNARILLHQPSGGFS----GQASDIERHAQDI 158
           G  + S             G  G+   +PN + +L   S        G+ SD   ++   
Sbjct: 398 GYYIASVTEKIYADKDSLTGSIGVVSIIPNIKKMLGNVSINVDEVKKGEYSD--IYSMVK 455

Query: 159 VKIKRRLNEIYVKN------------CGKTYEE--VEKTLDRDHIMSASEACDWGVVDKV 204
              K + +++Y  N             G+      VE+       +   EA + G+VD++
Sbjct: 456 DFDKDKRDKLYASNLKVYNEFLDTVSFGRKLNRQHVERIAQGKVWL-GEEALELGLVDEI 514


>gi|327313455|ref|YP_004328892.1| signal peptide peptidase SppA, 67K type [Prevotella denticola
           F0289]
 gi|326946213|gb|AEA22098.1| signal peptide peptidase SppA, 67K type [Prevotella denticola
           F0289]
          Length = 592

 Score = 44.1 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 40/179 (22%), Positives = 70/179 (39%), Gaps = 32/179 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP--PISTFCMGQAAS 113
           A  +C  L  L  +   K + L INS GG   A   I+  +  +K   P+     G AAS
Sbjct: 332 AQTVCKDLEALGKDKDVKAVVLRINSGGGSAYASEQIWHQIMKLKKLKPVVVSMGGMAAS 391

Query: 114 MGSLLLSA------------GEKGMRFALPNARILLHQPSGGF-----SGQASDIERHA- 155
            G  + +             G  G+    P+A  L  +  G       + Q SD    A 
Sbjct: 392 GGYYMSAPANWIVAEPTTITGSIGIFGMFPDASGLFAEKLGVKFDEVKTNQHSDFGTQAR 451

Query: 156 ----QDIVKIKRRLNEIY-------VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
               +++  + + ++  Y        +    T E++EK + + H+ +  +A   G+VD+
Sbjct: 452 PFTEEEMAFLGQYVDRGYRLFRHRVAEGRRMTDEQIEK-IAQGHVFTGQDARKIGLVDQ 509


>gi|196231671|ref|ZP_03130528.1| signal peptide peptidase SppA, 36K type [Chthoniobacter flavus
           Ellin428]
 gi|196224143|gb|EDY18656.1| signal peptide peptidase SppA, 36K type [Chthoniobacter flavus
           Ellin428]
          Length = 345

 Score = 44.1 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 75/191 (39%), Gaps = 30/191 (15%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ-------FIKP 101
           G + + M   +  QL     +   K + LY++SPGG VTA  +IYD ++         K 
Sbjct: 84  GALGESMVDDLKIQLEQAATDEKVKAVVLYVDSPGGEVTASDSIYDAVRKVREGGYGKKK 143

Query: 102 PISTFCMGQAAS------------MGSLLLSAGEKGMRFALPNARILLH----QPSGGFS 145
           P+  +    AAS            M +     G  G+     N + L      Q     S
Sbjct: 144 PVVVYMGSLAASGGYYISCAGTWLMANETTLTGSIGVIMQSLNYKELFGKLGLQTVTFKS 203

Query: 146 GQASDIERHAQDI-VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD-K 203
           GQ  D+   ++D+  + +  + ++ +   GK    V K    +  ++  E    G+ D +
Sbjct: 204 GQFKDMLSGSRDLTQEERDYIQKMVMDTYGKFVGIVAK----ERKLNEDE-LRHGLADGR 258

Query: 204 VLMSRIDIEEK 214
           V+  +  +  K
Sbjct: 259 VISGKDALAAK 269


>gi|187250455|ref|YP_001874937.1| signal peptide peptidase SppA, 36K type [Elusimicrobium minutum
           Pei191]
 gi|186970615|gb|ACC97600.1| Signal peptide peptidase SppA, 36K type [Elusimicrobium minutum
           Pei191]
          Length = 371

 Score = 44.1 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 68/187 (36%), Gaps = 38/187 (20%)

Query: 51  IEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM----QFIKPPISTF 106
             D  A+ I  ++     ++  K I + INSPGG V A   IY+ +    Q     +   
Sbjct: 123 WRDQSASSIARRIRTTADKDNVKAIIIDINSPGGTVAAVQDIYNAILYARQVKNKKVVAL 182

Query: 107 CMGQAASMGSLLLSAGEK------------GMRFALPNARILLHQPSGGF----SGQASD 150
               +AS G  +  A +K            G+ F   N   L+++    F    SGQ  D
Sbjct: 183 FRDVSASGGYYIAVACDKIVAQPGTLTGSIGVIFQTGNFEGLMNKIGVSFSTIKSGQHKD 242

Query: 151 IERHAQDIVKIKRRLNEIYVK----------NCGK----TYE-EVEKTLDRDHIMSASEA 195
           I    + + + +R L +  +             G+      E +V        I +  +A
Sbjct: 243 IGSPYRKMTEEERTLLQELIDDSYNQFLDVVKTGRPNMNPVELKVYAD---GRIFTGRKA 299

Query: 196 CDWGVVD 202
              G++D
Sbjct: 300 FSIGLID 306


>gi|302348710|ref|YP_003816348.1| Nodulation protein NfeD related protein [Acidilobus saccharovorans
           345-15]
 gi|302329122|gb|ADL19317.1| Nodulation protein NfeD related protein [Acidilobus saccharovorans
           345-15]
          Length = 436

 Score = 44.1 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 49/137 (35%), Gaps = 12/137 (8%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTM---QFIKPPISTFCM--GQAASMGSLLLSAGEKGMR 127
           K I + +N+PGG ++  + I   +   Q    P+ T+    G AAS GS +  A      
Sbjct: 69  KAIVIVMNTPGGYLSDMLKIVSYIEQAQAAGIPVYTYVPPDGMAASAGSYIAMA---TNS 125

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
             + N   +         G   +       ++     L        G+     +  +  D
Sbjct: 126 IIMDNGTFIGPSTPIVVGGTPLEQNHTEDAMIAFMESL----ASKWGRNATAAKIMVVDD 181

Query: 188 HIMSASEACDWGVVDKV 204
              +A EA  + +++ V
Sbjct: 182 RAFTAEEALRYHLINNV 198


>gi|316934714|ref|YP_004109696.1| hypothetical protein Rpdx1_3392 [Rhodopseudomonas palustris DX-1]
 gi|315602428|gb|ADU44963.1| hypothetical protein Rpdx1_3392 [Rhodopseudomonas palustris DX-1]
          Length = 262

 Score = 44.1 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 9/132 (6%)

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           ++ +NSPGG V+  +AI   ++  +           AS   L+L  G +  R     A +
Sbjct: 125 TVVLNSPGGSVSDALAIGRMIREHRLATEVEAGKYCASSCPLVLFGGTE--RRVGAKAAV 182

Query: 136 LLHQPSGGFSGQ--ASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL----DRDHI 189
            +HQ     +G+  AS       D  +I  R      +  G   E   + +    DR  +
Sbjct: 183 GVHQVFAVNAGETAASPPRDQMSDAQRISARCQRYLSE-MGIDLEVWIRAMETPKDRLFV 241

Query: 190 MSASEACDWGVV 201
               E   + +V
Sbjct: 242 FKPEELNKYRIV 253


>gi|163739148|ref|ZP_02146560.1| periplasmic protein-like protein [Phaeobacter gallaeciensis BS107]
 gi|161387548|gb|EDQ11905.1| periplasmic protein-like protein [Phaeobacter gallaeciensis BS107]
          Length = 248

 Score = 44.1 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 9/106 (8%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPI 103
           ++ +TG+I +  AT     L  LEA   Q    +Y+NSPGG V+  + I   ++      
Sbjct: 88  VLTLTGRISEGDATRFSDYLETLEALPSQ----VYLNSPGGSVSDALTIGRALRARDMNT 143

Query: 104 STFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
                    S    +L+AG    R A  +A I +HQ    + GQ +
Sbjct: 144 VMSASDICLSACPYILAAG--VSRIADADAMIGVHQ---HYFGQNT 184


>gi|260175077|ref|ZP_05761489.1| protease IV [Bacteroides sp. D2]
 gi|299147649|ref|ZP_07040713.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. 3_1_23]
 gi|315923305|ref|ZP_07919545.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|298514436|gb|EFI38321.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. 3_1_23]
 gi|313697180|gb|EFS34015.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 592

 Score = 44.1 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 70/189 (37%), Gaps = 33/189 (17%)

Query: 55  MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF--IKPPISTFCMGQAA 112
           + + +   L  L+  +  K + L +NSPGG   A   I+  ++    K P+       AA
Sbjct: 332 VGSKVIRDLRKLKDNDDVKAVVLRVNSPGGSAFASEQIWHAVKELKTKKPVIVSMGDYAA 391

Query: 113 SMGSLLLS------------AGEKGMRFALPNARILLHQPSGGF----SGQASDIERHAQ 156
           S G  +               G  G+   +PN + L  +    +    + + +D     +
Sbjct: 392 SGGYYISCVADTIVAEPTTLTGSIGIFGMIPNVKGLTDKIGLSYDVVKTNKFADFGNIMR 451

Query: 157 DIVKIKRRLNEIY------------VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
              + ++ L ++              +    T E +EK  +     +   A + G+VD++
Sbjct: 452 PFNEDEKSLLQMMITEGYDTFVTRCAEGRHMTKEAIEKIAEGRVW-TGETAKELGLVDEL 510

Query: 205 --LMSRIDI 211
             +   +DI
Sbjct: 511 GGIDKALDI 519


>gi|156934334|ref|YP_001438250.1| protease 4 [Cronobacter sakazakii ATCC BAA-894]
 gi|156532588|gb|ABU77414.1| hypothetical protein ESA_02165 [Cronobacter sakazakii ATCC BAA-894]
          Length = 616

 Score = 44.1 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 61/177 (34%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM---QFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I   +   +    P+     G AA
Sbjct: 347 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASETIRQELAAAKEAGKPVVVSMGGMAA 406

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----------- 149
           S G  + +             G  G+   +      L        G A+           
Sbjct: 407 SGGYWISTPANYIVANPSTLTGSIGIFGVINTVENSLDAIGVHTDGVATSPLAEVSVTKA 466

Query: 150 ---DIERHAQD-IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
              ++++  Q  I    +R   +  ++  KT +++++        +  +A   G+VD
Sbjct: 467 LPPEVQKLMQLTIENGYQRFIGLVAQSRNKTPQQIDQIAQGHVW-TGEDAKQNGLVD 522


>gi|53714736|ref|YP_100728.1| protease IV [Bacteroides fragilis YCH46]
 gi|52217601|dbj|BAD50194.1| protease IV [Bacteroides fragilis YCH46]
          Length = 592

 Score = 44.1 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 67/179 (37%), Gaps = 31/179 (17%)

Query: 55  MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP--PISTFCMGQAA 112
           + + +   L  L+ ++  K + L +NSPGG   A   I+  ++ +K   P+       AA
Sbjct: 332 IGSKMIRDLRKLKEDDDVKAVVLRVNSPGGSAFASEQIWHAVKELKAKKPVIVSMGDYAA 391

Query: 113 SMGSLLLS------------AGEKGMRFALPNARILLHQPSGGF----SGQASDIERHAQ 156
           S G  +               G  G+   +PN + L  +    +    + Q SD     +
Sbjct: 392 SGGYYISCAADSIIAEPTTLTGSIGIFGMIPNVKGLTEKIGLTYDVVKTNQFSDFGNLMR 451

Query: 157 DIVKIKRRLNEIY------------VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            +   +R L ++              +    + +++EK  +     +   A   G+VD+
Sbjct: 452 PVNSDERALLQMMIGQGYDLFVSRCAEGRHMSKDKIEKIAEGRVW-TGEMAKKIGLVDE 509


>gi|158521750|ref|YP_001529620.1| signal peptide peptidase SppA, 36K type [Desulfococcus oleovorans
           Hxd3]
 gi|158510576|gb|ABW67543.1| signal peptide peptidase SppA, 36K type [Desulfococcus oleovorans
           Hxd3]
          Length = 319

 Score = 44.1 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 63/184 (34%), Gaps = 31/184 (16%)

Query: 52  EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY----DTMQFIKPPISTFC 107
              M     AQL   + +   K + L +NSPGG +TA   +Y    D  Q    P+    
Sbjct: 56  HPGMLDEFVAQLALAKEDPSIKALVLKVNSPGGTITASDIMYKELMDFKQQTGKPVVAAL 115

Query: 108 MGQAASMGSLLLSA------------GEKGMRFALPNARILLHQPSGGF----SGQASDI 151
           M  AAS G  +               G  G+ F  P    L+ +         SG+  D+
Sbjct: 116 MDVAASGGYYISLPADHILAHPTTLTGSVGVIFVTPRVSGLMDKLGLDMKIRKSGKHKDM 175

Query: 152 ----ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT----LDR---DHIMSASEACDWGV 200
                    +   +   + +          E+        +++     I +A +A   G+
Sbjct: 176 GSPFRDTTAEEDALFDGIIDDMAGRFAGLVEKHRADQKPDMEKIKTARIFTADDALSAGL 235

Query: 201 VDKV 204
           VD+V
Sbjct: 236 VDQV 239


>gi|322511328|gb|ADX06637.1| putative protease subunit [Organic Lake phycodnavirus]
          Length = 51

 Score = 44.1 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 25/48 (52%)

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           +  +   +  IY+ +    Y E++  L +D  ++A     +G+VD++L
Sbjct: 4   MKILMDMIETIYLNHTFIPYNELDTLLKKDIWLNAETCLKYGLVDEIL 51


>gi|119473463|ref|ZP_01614970.1| ATP-dependent Clp protease proteolytic subunit [Alteromonadales
          bacterium TW-7]
 gi|119444459|gb|EAW25792.1| ATP-dependent Clp protease proteolytic subunit [Alteromonadales
          bacterium TW-7]
          Length = 32

 Score = 44.1 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/27 (74%), Positives = 21/27 (77%)

Query: 12 EDVFLGLVPMVVEQTNRGERSYDIYSR 38
           D    LVPMVVEQT +GERSYDIYSR
Sbjct: 6  TDPLNALVPMVVEQTPKGERSYDIYSR 32


>gi|255011818|ref|ZP_05283944.1| putative protease IV [Bacteroides fragilis 3_1_12]
 gi|313149656|ref|ZP_07811849.1| protease IV [Bacteroides fragilis 3_1_12]
 gi|313138423|gb|EFR55783.1| protease IV [Bacteroides fragilis 3_1_12]
          Length = 592

 Score = 44.1 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 67/179 (37%), Gaps = 31/179 (17%)

Query: 55  MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP--PISTFCMGQAA 112
           + + +   L  L+ ++  K + L +NSPGG   A   I+  ++ +K   P+       AA
Sbjct: 332 IGSKMIRDLRKLKEDDDVKAVVLRVNSPGGSAFASEQIWHAVKELKAKKPVIVSMGDYAA 391

Query: 113 SMGSLLLS------------AGEKGMRFALPNARILLHQPSGGF----SGQASDIERHAQ 156
           S G  +               G  G+   +PN + L  +    +    + Q SD     +
Sbjct: 392 SGGYYISCAADSIIAEPTTLTGSIGIFGMIPNVKGLTEKIGLTYDVVKTNQFSDFGNLMR 451

Query: 157 DIVKIKRRLNEIY------------VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            +   +R L ++              +    + +++EK  +     +   A   G+VD+
Sbjct: 452 PVNSDERALLQMMIGQGYDLFVSRCAEGRHMSKDKIEKIAEGRVW-TGEMAKKIGLVDE 509


>gi|60682742|ref|YP_212886.1| putative protease IV [Bacteroides fragilis NCTC 9343]
 gi|60494176|emb|CAH08968.1| putative protease IV [Bacteroides fragilis NCTC 9343]
          Length = 592

 Score = 44.1 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 67/179 (37%), Gaps = 31/179 (17%)

Query: 55  MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP--PISTFCMGQAA 112
           + + +   L  L+ ++  K + L +NSPGG   A   I+  ++ +K   P+       AA
Sbjct: 332 IGSKMIRDLRKLKEDDDVKAVVLRVNSPGGSAFASEQIWHAVKELKAKKPVIVSMGDYAA 391

Query: 113 SMGSLLLS------------AGEKGMRFALPNARILLHQPSGGF----SGQASDIERHAQ 156
           S G  +               G  G+   +PN + L  +    +    + Q SD     +
Sbjct: 392 SGGYYISCAADSIIAEPTTLTGSIGIFGMIPNVKGLTEKIGLTYDVVKTNQFSDFGNLMR 451

Query: 157 DIVKIKRRLNEIY------------VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            +   +R L ++              +    + +++EK  +     +   A   G+VD+
Sbjct: 452 PVNSDERALLQMMIGQGYDLFVSRCAEGRHMSKDKIEKIAEGRVW-TGEMAKKIGLVDE 509


>gi|300864377|ref|ZP_07109249.1| signal peptide peptidase A [Oscillatoria sp. PCC 6506]
 gi|300337603|emb|CBN54395.1| signal peptide peptidase A [Oscillatoria sp. PCC 6506]
          Length = 601

 Score = 44.1 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 63/181 (34%), Gaps = 35/181 (19%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD--TMQFIKPPISTFCMGQAAS 113
              I  +L  L      K + L +NSPGG  TA   I     +   K P+       AAS
Sbjct: 336 GDRIAKELRELRENENVKAVVLRVNSPGGSATASEVIGREVVLTRKKKPVIVSMGNLAAS 395

Query: 114 MGSLLLSAGEKGMRFALPNAR---------ILLHQPSGGFSGQASDIERHAQ-------- 156
            G  +     +   FA PN           ++  Q     +G + D  +  +        
Sbjct: 396 GGYWISMNANRI--FAEPNTITGSIGVFGLLMNAQRLANNNGISWDTVKTGRYADSETIS 453

Query: 157 ------DIVKIKRRLNEIYVKNCGK-------TYEEVEKTLDRDHIMSASEACDWGVVDK 203
                 ++  I+R ++ IY +   K          +V++        S S A   G+VD+
Sbjct: 454 RPKTPQELANIQRVVDRIYDRFTQKVAQSRKLPLAKVQEIAQGRVW-SGSAAKQLGLVDE 512

Query: 204 V 204
           +
Sbjct: 513 I 513


>gi|87312380|ref|ZP_01094470.1| hypothetical protein DSM3645_05869 [Blastopirellula marina DSM
           3645]
 gi|87284908|gb|EAQ76852.1| hypothetical protein DSM3645_05869 [Blastopirellula marina DSM
           3645]
          Length = 173

 Score = 44.1 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 57/159 (35%), Gaps = 8/159 (5%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
           + ++G++ + M+ L       L A     E +LY +SPGG   A  A+   ++  +   +
Sbjct: 16  IAISGELGEDMSELY----EKLIAVPEGGECTLYFDSPGGSSYAASALVSLIKLRRLKAT 71

Query: 105 TFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQA--SDIERHAQDIVKIK 162
              +G+ +S      +A     R+    + +L H            ++     +    + 
Sbjct: 72  GIVIGECSSAAIWPFAACY--QRYVTRWSVLLFHPMRWQSEENIPLAEAREWVRHYKFLH 129

Query: 163 RRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
             ++ +     G   E + +       +   E  + G+ 
Sbjct: 130 EEMDVLLANLFGADEELINRWTHPGKFVIGPELAEAGLA 168


>gi|310643050|ref|YP_003947808.1| protein [Paenibacillus polymyxa SC2]
 gi|309248000|gb|ADO57567.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2]
          Length = 455

 Score = 44.1 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 54/155 (34%), Gaps = 26/155 (16%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I L IN+PGG V     +   ++    P   +  G+AAS GS +  +  K    A+    
Sbjct: 75  ILLDINTPGGRVDTAEKLGKLIKDSPIPTVAYIKGEAASAGSYIALSANK---IAMKPGS 131

Query: 135 ILLHQPSGGFSGQA-SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD-------- 185
           I+         G A +D     + I   K  +     +  G+  +     +D        
Sbjct: 132 IIGAAALVDGRGNAITD----PKTIAWWKSSMASA-AEAGGRNPDIARGMVDSKTTVSIP 186

Query: 186 RDHI---------MSASEACDWGVVDKVLMSRIDI 211
             +          +++ EA   G  D +  S  ++
Sbjct: 187 EMNFNKENGQIISLTSEEALKLGYADHIASSEQEV 221


>gi|253565829|ref|ZP_04843283.1| protease IV [Bacteroides sp. 3_2_5]
 gi|251944933|gb|EES85371.1| protease IV [Bacteroides sp. 3_2_5]
 gi|301164217|emb|CBW23775.1| putative protease IV [Bacteroides fragilis 638R]
          Length = 592

 Score = 44.1 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 67/179 (37%), Gaps = 31/179 (17%)

Query: 55  MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP--PISTFCMGQAA 112
           + + +   L  L+ ++  K + L +NSPGG   A   I+  ++ +K   P+       AA
Sbjct: 332 IGSKMIRDLRKLKEDDDVKAVVLRVNSPGGSAFASEQIWHAVKELKAKKPVIVSMGDYAA 391

Query: 113 SMGSLLLS------------AGEKGMRFALPNARILLHQPSGGF----SGQASDIERHAQ 156
           S G  +               G  G+   +PN + L  +    +    + Q SD     +
Sbjct: 392 SGGYYISCAADSIIAEPTTLTGSIGIFGMIPNVKGLTEKIGLTYDVVKTNQFSDFGNLMR 451

Query: 157 DIVKIKRRLNEIY------------VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            +   +R L ++              +    + +++EK  +     +   A   G+VD+
Sbjct: 452 PVNSDERALLQMMIGQGYDLFVSRCAEGRHMSKDKIEKIAEGRVW-TGEMAKKIGLVDE 509


>gi|284007469|emb|CBA72932.1| protease IV (signal peptide peptidase) [Arsenophonus nasoniae]
          Length = 626

 Score = 44.1 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 36/91 (39%), Gaps = 5/91 (5%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM---QFIK 100
           I+    +     +    AQ+         K I L +NSPGG VTA  AI + +   +   
Sbjct: 348 IIDGPQEPGMVGSETTVAQIRKARLNPDIKAIVLRVNSPGGSVTASEAIRNELVAARDAN 407

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
            PI     G AAS G  + +       FA P
Sbjct: 408 KPIVVSMGGMAASGGYWISTPA--NYIFASP 436


>gi|118431752|ref|NP_148417.2| serine protease [Aeropyrum pernix K1]
 gi|116063074|dbj|BAA81162.2| serine protease [Aeropyrum pernix K1]
          Length = 503

 Score = 43.7 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 72/172 (41%), Gaps = 11/172 (6%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPI 103
           I+ + G I++ M   +   +    AE     + + +N+PGG V A   +  ++   + P+
Sbjct: 91  IIRIEGTIDNAMMDYLKQSIER--AEEENAVLIVELNTPGGFVDAATEMVVSISKARIPV 148

Query: 104 STFCMG-QAASMGSLLLSAGEKGMRFALPNARILLHQPSGG--FSGQASDIERHAQDIVK 160
             + +   A S G+++L      +    P   I   QP      +G    +   ++ I  
Sbjct: 149 VGYVVEKWAESAGTMILM--STHIAAMQPGTIIGSVQPIAYDPTTGSYQPV-LDSKIINP 205

Query: 161 IKRRLNEIYVKNCGKTYEEVEKT-LDRDHIMSASEACDWGVVDKVLMSRIDI 211
           I + L E      G+  E + +  L  D+   A EA + GV+D +   R ++
Sbjct: 206 IVKTLCEHGATR-GRNPEALVRFVLYNDNY-GAEEALEKGVIDLIARDRSEL 255


>gi|319902957|ref|YP_004162685.1| signal peptide peptidase A [Bacteroides helcogenes P 36-108]
 gi|319417988|gb|ADV45099.1| signal peptide peptidase A [Bacteroides helcogenes P 36-108]
          Length = 591

 Score = 43.7 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 72/188 (38%), Gaps = 32/188 (17%)

Query: 46  FVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF--IKPPI 103
            +TG+   + +  +   L  L+ +   K + L +NSPGG       I+  +     K P+
Sbjct: 323 TLTGEEGIN-SEKVIKDLRKLKDDKDVKAVVLRVNSPGGSAYGSEQIWYAVSELKKKKPV 381

Query: 104 STFCMGQAASMGSLLLSA------------GEKGMRFALPNARILLHQPSGGF----SGQ 147
                  AAS G  +               G  G+    PNA+ L  +    F    + +
Sbjct: 382 IVSMGDYAASGGYYISCNADTIVAEPTTLTGSIGIFGMFPNAKGLADKIGISFDVVKTNR 441

Query: 148 ASDIERHAQDIVKIKRRLNEIY---------VKNC---GKTYEEVEKTLDRDHIMSASEA 195
            SD     + + + ++ L ++Y          +     G + EE++K        + S+A
Sbjct: 442 YSDFGMITRPMNEGEKGLLQMYINQGYDTFLARCSEGRGISKEELDKIAQGRVW-TGSKA 500

Query: 196 CDWGVVDK 203
            + G+VD+
Sbjct: 501 KELGLVDE 508


>gi|242398488|ref|YP_002993912.1| Putative protease [Thermococcus sibiricus MM 739]
 gi|242264881|gb|ACS89563.1| Putative protease [Thermococcus sibiricus MM 739]
          Length = 335

 Score = 43.7 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ--FIKP 101
           I+ V G I++  A  + +++  +  ++    + L+I SPGG V   + IY  ++    + 
Sbjct: 95  ILPVVGPIDETAAFDVISKIREIRNDDNIGGVVLWIESPGGYVGPVITIYKELKKLSYEK 154

Query: 102 PISTFCMGQAASMGSLLLSAGEK 124
           PI  +  G AAS G L+  A +K
Sbjct: 155 PIVAYTGGMAASGGYLIACAADK 177


>gi|183599305|ref|ZP_02960798.1| hypothetical protein PROSTU_02769 [Providencia stuartii ATCC 25827]
 gi|188021539|gb|EDU59579.1| hypothetical protein PROSTU_02769 [Providencia stuartii ATCC 25827]
          Length = 622

 Score = 43.7 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 65/192 (33%), Gaps = 37/192 (19%)

Query: 46  FVTGQIEDHMA--TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM---QFIK 100
            + G     +A   LI +Q+         K I L +NSPGG VTA   I + +   +   
Sbjct: 344 IMDGPQSPGIASGDLISSQIREARLNENIKAIILRVNSPGGSVTASDLIRNELASARAAG 403

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI--------------LLHQPSGGFSG 146
            P+     G AAS G  + +        A PN                  L        G
Sbjct: 404 KPVVVSMGGMAASGGYWVSTPA--NYIVASPNTITGSIGIFGVINTFENALDSVGVYTDG 461

Query: 147 QAS----DIE----RHAQDIVKIKRRLNEIYVKNCG-------KTYEEVEKTLDRDHIMS 191
            ++    DI        +    ++  +   Y    G       KT EE++K       + 
Sbjct: 462 VSTTPLADISATKGISPEFSDMMQITIENGYKTFIGLVAKSRNKTPEEIDKIAQGRVWI- 520

Query: 192 ASEACDWGVVDK 203
            S+A   G+VD+
Sbjct: 521 GSDAKKIGLVDQ 532


>gi|225182027|ref|ZP_03735459.1| protein of unknown function DUF114 [Dethiobacter alkaliphilus AHT
           1]
 gi|225167312|gb|EEG76131.1| protein of unknown function DUF114 [Dethiobacter alkaliphilus AHT
           1]
          Length = 277

 Score = 43.7 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 3/80 (3%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
           + +T  I    +  +   L  +        I L I++PGG+V A   I + ++     ++
Sbjct: 63  IPLTRYINIEDSEQV---LRAIRYTPDDMPIDLLIHTPGGLVLASEQIANALKNHPSKVT 119

Query: 105 TFCMGQAASMGSLLLSAGEK 124
            F    A S G+++  A ++
Sbjct: 120 VFVPHYAMSGGTMIALAADE 139


>gi|260891981|ref|YP_003238078.1| signal peptide peptidase SppA, 36K type [Ammonifex degensii KC4]
 gi|260864122|gb|ACX51228.1| signal peptide peptidase SppA, 36K type [Ammonifex degensii KC4]
          Length = 296

 Score = 43.7 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 63/176 (35%), Gaps = 32/176 (18%)

Query: 59  ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI---KPPISTFCMGQAASMG 115
           +   L   E +   K + L I+SPGG   A   I D ++ +      +       AAS  
Sbjct: 67  VIEALGRAEEDPSIKAVVLRIDSPGGSAAASQEISDAVRRVQKAGKKVVVSMGDTAASGA 126

Query: 116 SLLLSAGEK------------GMRFALPNARILLH----QPSGGFSGQASDIERHAQ--- 156
             + +  +K            G+ F   N   L H    Q     SG   D+   ++   
Sbjct: 127 YWVAAGADKIVALPSTITGSIGVIFETANLSGLYHKLGIQKEILKSGPFKDMGSESRPLT 186

Query: 157 -----DIVKIKRRLNEIYVKNCGK----TYEEVEKTLDRDHIMSASEACDWGVVDK 203
                 +  +   + + +V +  +      ++V +  D   + +  +A + G+VD+
Sbjct: 187 PEERAILQGMVDDIYQQFVDHVAQGRHLPRQKVLELAD-GRVFTGRQAKELGLVDE 241


>gi|166368609|ref|YP_001660882.1| protease IV [Microcystis aeruginosa NIES-843]
 gi|166090982|dbj|BAG05690.1| protease IV [Microcystis aeruginosa NIES-843]
          Length = 604

 Score = 43.7 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 68/210 (32%), Gaps = 38/210 (18%)

Query: 29  GERSYDIYSRLLKERIVFVTGQIEDHMA-TLICAQLLFLEAENPQKEISLYINSPGGVVT 87
           G  S D  + +  E  +         +    +  +L  L+ +   K + L INSPGG  T
Sbjct: 311 GGDSSDQIAIVYAEGTIVEGQGDRGEIGGDKLAKELRKLQGKEEVKAVVLRINSPGGSAT 370

Query: 88  AGMAIYDTMQF--IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI--------LL 137
           A   I   ++    K P+       AAS G  +   G+   R    N  I        LL
Sbjct: 371 ASEVILREIKRLDAKKPVIISLGDVAASGGYWIAMGGQ---RIFADNDTITGSIGVFGLL 427

Query: 138 HQPSGGF-----------SGQASDI------------ERHAQDIVKIKRRLNEIYVKNCG 174
                             +GQ +DI            E +   + +      E   K   
Sbjct: 428 LNIQKIANNNGIDWDTVKTGQLADISTITRPKNPQELEIYQAAVNRFYDLFIETVAKGRK 487

Query: 175 KTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            + ++V          +  +A   G+VD++
Sbjct: 488 LSPDKVRTVAQGRVW-TGKDAVKIGLVDQI 516


>gi|330444147|ref|YP_004377133.1| proteinase IV [Chlamydophila pecorum E58]
 gi|328807257|gb|AEB41430.1| proteinase IV [Chlamydophila pecorum E58]
          Length = 303

 Score = 43.7 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 65/192 (33%), Gaps = 46/192 (23%)

Query: 54  HMATLICAQLLFLEAENPQ---KEISLYINSPGGVVTAGMAIYDTMQFIKP----PISTF 106
             A  +   LL LE E  +   K + L +N PGG V     IY T+ F K     P+  F
Sbjct: 52  SSAKSLEEALLALEKEPFKDRVKGVILDMNCPGGEVFEVSRIYATLNFWKQKSSLPLYVF 111

Query: 107 CMGQAASMGSLLLSAGEKGM-------------------------RFALPNARILLH--- 138
             G  AS G  +    +K                           R  + +  +      
Sbjct: 112 VNGLCASGGYYIACTADKIYTSPASLIGSVGVLSGPYFNVKEGLNRHGIESDVLTAGEEK 171

Query: 139 ---QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTY---EEVEKTLDRDHIMSA 192
               P   ++ QA   +     I  +  +  ++   +  +     +++E+TL    I   
Sbjct: 172 APLNPYTPWTAQAR--KERQGVIDFLYGQFVDVVASH--RPLLTKDKLERTLGA-RIFPP 226

Query: 193 SEACDWGVVDKV 204
            +A + G VD +
Sbjct: 227 QQALEEGFVDVI 238


>gi|265766569|ref|ZP_06094398.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. 2_1_16]
 gi|263252946|gb|EEZ24422.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. 2_1_16]
          Length = 592

 Score = 43.7 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 67/179 (37%), Gaps = 31/179 (17%)

Query: 55  MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP--PISTFCMGQAA 112
           + + +   L  L+ ++  K + L +NSPGG   A   I+  ++ +K   P+       AA
Sbjct: 332 IGSKMIRDLRKLKEDDDVKAVVLRVNSPGGSAFASEQIWHAVKELKAKKPVIVSMGDYAA 391

Query: 113 SMGSLLLS------------AGEKGMRFALPNARILLHQPSGGF----SGQASDIERHAQ 156
           S G  +               G  G+   +PN + L  +    +    + Q SD     +
Sbjct: 392 SGGYYISCAADSIIAEPTTLTGSIGIFGMIPNVKGLTEKIGLTYDVVKTNQFSDFGNLMR 451

Query: 157 DIVKIKRRLNEIY------------VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            +   +R L ++              +    + +++EK  +     +   A   G+VDK
Sbjct: 452 PVNSDERALLQMMIGQGYDLFVSRCAEGRHMSKDKIEKIAEGRVW-TGEMAKKIGLVDK 509


>gi|222055988|ref|YP_002538350.1| signal peptide peptidase SppA, 36K type [Geobacter sp. FRC-32]
 gi|221565277|gb|ACM21249.1| signal peptide peptidase SppA, 36K type [Geobacter sp. FRC-32]
          Length = 298

 Score = 43.7 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 70/189 (37%), Gaps = 31/189 (16%)

Query: 58  LICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ--FIKPPISTFCMGQAASMG 115
               QL  L      K + L I+SPGGVV     I+D ++   +K  +       AAS G
Sbjct: 57  ETVKQLQALRKNEKVKAVVLRIDSPGGVVGPSQEIHDAVKKLNMKKKVVVSMGSLAASGG 116

Query: 116 SLLLSAGEK------------GMRFALPNARILLHQPSGGF----SGQASDIERHAQDIV 159
             +     K            G+     N   L+ +         +G+  D+   A+ + 
Sbjct: 117 YYIAVPATKIFANPGTITGSIGVLMKFSNIEGLMDKVGMKAFTLKTGKFKDVGSPARTMT 176

Query: 160 KIKRRLNEIYVKNC-GK-----------TYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
             ++ + +  + +  G+             EEV ++L    I S  +A    ++D++   
Sbjct: 177 DQEKEMLQSVIDSTHGQFIKAVAEGRKLPVEEV-RSLANGRIYSGEQALALKLIDQLGTL 235

Query: 208 RIDIEEKSK 216
           +  +EE  +
Sbjct: 236 QDAVEEAGR 244


>gi|260597600|ref|YP_003210171.1| protease 4 [Cronobacter turicensis z3032]
 gi|260216777|emb|CBA30223.1| Protease 4 [Cronobacter turicensis z3032]
          Length = 616

 Score = 43.7 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 61/177 (34%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM---QFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I   +   +    PI     G AA
Sbjct: 347 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASETIRQELAAAKEAGKPIVVSMGGMAA 406

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----------- 149
           S G  + +             G  G+   +      L        G A+           
Sbjct: 407 SGGYWISTPASYIVANPSTLTGSIGIFGVINTVENSLDSIGVHTDGVATSPLADVSVTKA 466

Query: 150 ---DIERHAQD-IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
              ++++  Q  I    +R   +  ++  KT +++++        +  +A   G+VD
Sbjct: 467 LPPEVQKLMQLTIENGYQRFIGLVAQSRHKTPQQIDQIAQGHVW-TGEDAKQNGLVD 522


>gi|317123138|ref|YP_004103141.1| signal peptide peptidase A [Thermaerobacter marianensis DSM 12885]
 gi|315593118|gb|ADU52414.1| signal peptide peptidase A [Thermaerobacter marianensis DSM 12885]
          Length = 311

 Score = 43.7 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 65/179 (36%), Gaps = 32/179 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
           A  + AQL     +   + + + +N+PGG   A   I      ++    P+        A
Sbjct: 67  ADEVVAQLQKARDDPAVRAVVIRMNTPGGSAAAAQEIGVAVQRLRDAGKPVVASIADLGA 126

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLH----QPSGGFSGQASDIERHAQ 156
           S G  + +             G  G+   + +   L            SG   DI    +
Sbjct: 127 SGGYWIAAMADRIVANPASLTGSIGVIMEVTHYEDLYQKLGIDVETIKSGPYKDIGSATR 186

Query: 157 DIVKIKRRL-----NEIYVKNC-----GK--TYEEVEKTLDRDHIMSASEACDWGVVDK 203
            + + +RRL     N+IY +       G+  + E V +  D   + +  +A + G+VD+
Sbjct: 187 PLTEEERRLLQGLVNDIYQQFVDVVARGRKLSRERVLELAD-GRVFTGRQAKEAGLVDE 244


>gi|18977955|ref|NP_579312.1| protease IV [Pyrococcus furiosus DSM 3638]
 gi|18893729|gb|AAL81707.1| protease iv [Pyrococcus furiosus DSM 3638]
          Length = 329

 Score = 43.7 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ--FIKP 101
           IV + G I+++MA  +  +L  ++++   + + L+I+SPGG +    AIY  ++      
Sbjct: 89  IVPIFGLIDENMALEVVKKLEVIKSDPSIRGVLLWIDSPGGYIGPVRAIYKEVKELAYIK 148

Query: 102 PISTFCMGQAASMGSLLLSAGEK 124
           PI  +  G A S G  +    +K
Sbjct: 149 PIVAYISGYATSGGYYIACGADK 171


>gi|262043079|ref|ZP_06016219.1| signal peptide peptidase SppA [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039567|gb|EEW40698.1| signal peptide peptidase SppA [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 617

 Score = 43.3 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM---QFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I + +   +    P+     G AA
Sbjct: 348 GDTTAAQIRDARLDPKIKAIVLRVNSPGGSVTASEIIREELAAAKAAGKPVVVSMGGMAA 407

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----------- 149
           S G  + +             G  G+   +      L        G A+           
Sbjct: 408 SGGYWISTPADYIVANPSTLTGSIGIFGVINTVENTLGSIGVHTDGVATSPLADVSSTKA 467

Query: 150 ---DIERHAQD-IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
              ++++  Q  I    +R   +       T E++++        +  +A   G+VD
Sbjct: 468 LPPEVQQLMQLSIENGYQRFITLVANARKSTPEKIDQIAQGHVW-TGEDAKANGLVD 523


>gi|257452656|ref|ZP_05617955.1| protease IV [Fusobacterium sp. 3_1_5R]
 gi|317059195|ref|ZP_07923680.1| protease IV [Fusobacterium sp. 3_1_5R]
 gi|313684871|gb|EFS21706.1| protease IV [Fusobacterium sp. 3_1_5R]
          Length = 564

 Score = 43.3 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 72/192 (37%), Gaps = 40/192 (20%)

Query: 47  VTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI--KPPIS 104
           +  +      TL   ++  ++ +   K I L INSPGG       +Y  ++ +  K P+ 
Sbjct: 307 LNLEGTIEDETLFLDEVKAIQKDQNVKGIILRINSPGGSALVADTMYHAVKKLREKIPVY 366

Query: 105 TFCMGQAASMGSLLLSAGEK------------GMRFALPNARILLHQPSGGFS----GQA 148
               G AAS G  + +AGEK            G+   +PN   L  + +        G+ 
Sbjct: 367 VSISGTAASGGYYVAAAGEKIFASPLSVTGSIGVVSMIPNFSNLEKKANVTTESISKGKY 426

Query: 149 SDI-----ERHAQDIVKIKRRLNEIYVKNCGKTYEEVE--KTLDRDH----------IMS 191
           +D+         ++  +I+     +Y        E V   + + +D            + 
Sbjct: 427 ADLYSYLQPLSEENYNRIREGNLGVYQDF----LEVVSSNRNIKKDFLDKNLAQGRVWL- 481

Query: 192 ASEACDWGVVDK 203
             EA + G++D+
Sbjct: 482 GIEAKENGLIDE 493


>gi|238894259|ref|YP_002918993.1| protease 4 [Klebsiella pneumoniae NTUH-K2044]
 gi|238546575|dbj|BAH62926.1| protease IV, a signal peptide peptidase [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
          Length = 617

 Score = 43.3 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM---QFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I + +   +    P+     G AA
Sbjct: 348 GDTTAAQIRDARLDPKIKAIVLRVNSPGGSVTASEIIREELAAAKAAGKPVVVSMGGMAA 407

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----------- 149
           S G  + +             G  G+   +      L        G A+           
Sbjct: 408 SGGYWISTPADYIVANPSTLTGSIGIFGVINTVENTLGSIGVHTDGVATSPLADVSSTKA 467

Query: 150 ---DIERHAQD-IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
              ++++  Q  I    +R   +       T E++++        +  +A   G+VD
Sbjct: 468 LPPEVQQLMQLSIENGYQRFITLVANARKSTPEKIDQIAQGHVW-TGEDAKANGLVD 523


>gi|206577621|ref|YP_002239066.1| protease 4 [Klebsiella pneumoniae 342]
 gi|288935968|ref|YP_003440027.1| signal peptide peptidase SppA, 67K type [Klebsiella variicola
           At-22]
 gi|290512774|ref|ZP_06552139.1| signal peptide peptidase SppA, 67K type [Klebsiella sp. 1_1_55]
 gi|206566679|gb|ACI08455.1| protease 4 [Klebsiella pneumoniae 342]
 gi|288890677|gb|ADC58995.1| signal peptide peptidase SppA, 67K type [Klebsiella variicola
           At-22]
 gi|289774657|gb|EFD82660.1| signal peptide peptidase SppA, 67K type [Klebsiella sp. 1_1_55]
          Length = 617

 Score = 43.3 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM---QFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I + +   +    P+     G AA
Sbjct: 348 GDTTAAQIRDARLDPKIKAIVLRVNSPGGSVTASEIIREELAAAKAAGKPVVVSMGGMAA 407

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----------- 149
           S G  + +             G  G+   +      L        G A+           
Sbjct: 408 SGGYWISTPADYIVANPSTLTGSIGIFGVINTVENTLGSIGVHTDGVATSPLADVSSTKA 467

Query: 150 ---DIERHAQD-IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
              ++++  Q  I    +R   +       T E++++        +  +A   G+VD
Sbjct: 468 LPPEVQQLMQLSIENGYQRFITLVANARKSTPEKIDQIAQGHVW-TGEDAKANGLVD 523


>gi|152969758|ref|YP_001334867.1| protease 4 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|150954607|gb|ABR76637.1| protease IV, a signal peptide peptidase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
          Length = 617

 Score = 43.3 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM---QFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I + +   +    P+     G AA
Sbjct: 348 GDTTAAQIRDARLDPKIKAIVLRVNSPGGSVTASEIIREELAAAKAAGKPVVVSMGGMAA 407

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----------- 149
           S G  + +             G  G+   +      L        G A+           
Sbjct: 408 SGGYWISTPADYIVANPSTLTGSIGIFGVINTVENTLGSIGVHTDGVATSPLADVSSTKA 467

Query: 150 ---DIERHAQD-IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
              ++++  Q  I    +R   +       T E++++        +  +A   G+VD
Sbjct: 468 LPPEVQQLMQLSIENGYQRFITLVANARKSTPEKIDQIAQGHVW-TGEDAKANGLVD 523


>gi|116327402|ref|YP_797122.1| periplasmic serine protease [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116331960|ref|YP_801678.1| periplasmic serine protease [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116120146|gb|ABJ78189.1| Periplasmic serine protease [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116125649|gb|ABJ76920.1| Periplasmic serine protease [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 317

 Score = 43.3 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 70/191 (36%), Gaps = 31/191 (16%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP--PISTFCMGQAAS 113
           +  I  +L  +E     K I + INSPGG V A   +Y+ +  ++    I       AAS
Sbjct: 72  SESILQKLRDIEQNPNIKGILIEINSPGGTVGASQEVYNELMRLRKTRKIVVSMKDMAAS 131

Query: 114 MGSLLLSAGEK------------GMRFALPNARILLH----QPSGGFSGQASDI------ 151
            G  + S+ +K            G+    PN + LL     +      G+  D       
Sbjct: 132 GGYYIASSADKIFALSGTITGSIGVIAMAPNIKGLLDRYGVKMRTYKEGKYKDSLSLFRD 191

Query: 152 ------ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
                 E   + +        +   K   +T + V+   +   I S  +A    +VD++ 
Sbjct: 192 STPEEDEMIQKMLSDTYNEFVQDVAKGRNQTVKSVQNLAE-GRIYSGQDAFRNKLVDEIG 250

Query: 206 MSRIDIEEKSK 216
             +  +EE S+
Sbjct: 251 GRKEALEELSR 261


>gi|325913830|ref|ZP_08176189.1| signal peptide peptidase SppA, 67K type [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325539905|gb|EGD11542.1| signal peptide peptidase SppA, 67K type [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 633

 Score = 43.3 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 59/161 (36%), Gaps = 32/161 (19%)

Query: 73  KEISLYINSPGGVVTAGMAIYD---TMQFIKPPISTFCMGQAASMGSLLLSA-------- 121
           K + L ++SPGG V A   I      ++    P+       AAS G  +           
Sbjct: 374 KAVVLRVDSPGGEVFASEQIRREVVALKQAGKPVVVSMGDLAASGGYWISMNADRIYADP 433

Query: 122 ----GEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK---------IKRRLNEI 168
               G  G+   +PN    L +      G  +     A DI +         I+  +N+ 
Sbjct: 434 STISGSIGIFGMVPNLTRALDKIGVHTDGVGTTRFAGAFDITRPLDPAAGQVIQAVINKG 493

Query: 169 YVKNCG-------KTYEEVEKTLDRDHIMSASEACDWGVVD 202
           Y    G       ++ E ++K + R  + S ++A   G+VD
Sbjct: 494 YADFTGKVAQARHQSVEAIDK-VARGRVWSGAQAKQHGLVD 533


>gi|189218092|ref|YP_001938734.1| Periplasmic serine protease, ClpP class [Methylacidiphilum
           infernorum V4]
 gi|189184950|gb|ACD82135.1| Periplasmic serine protease, ClpP class [Methylacidiphilum
           infernorum V4]
          Length = 331

 Score = 43.3 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 70/199 (35%), Gaps = 32/199 (16%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKE- 74
           +  VP+  E  +    + D    L+  R +    +        +    + L+A    K+ 
Sbjct: 37  IAPVPLEEEFVSGDFSTKDSKIALIHLRGLISQDEAGSFTQNSVEDIKVQLKAAREDKKV 96

Query: 75  --ISLYINSPGGVVTAGMAIYDTMQFIKP--PISTFCMGQAASMGSLLLSAGEKGMRFAL 130
             I + INSPGG V A   IY  ++  +   P+  +    AAS G      G     + +
Sbjct: 97  KGIIVAINSPGGEVNASDVIYHEIRLTRNVKPVVIYMESMAASGGYYSAVGGS----YLM 152

Query: 131 PNARILLHQPSGGFSGQASDIERHAQDIVK--IKRRLNEIYVKNCGKTYEEVEKTL---D 185
            N   +                     +VK  + +   + +V   GK      K L    
Sbjct: 153 ANDLTITGSIGV----------IMESFLVKDLMDKVGIKAFVFKSGK-----MKDLLNPT 197

Query: 186 RDHIMSASE-ACDWGVVDK 203
           R+  M+  E A   G++D+
Sbjct: 198 RE--MTPEEQAFVQGLIDE 214


>gi|330007634|ref|ZP_08305981.1| signal peptide peptidase SppA [Klebsiella sp. MS 92-3]
 gi|328535428|gb|EGF61902.1| signal peptide peptidase SppA [Klebsiella sp. MS 92-3]
          Length = 617

 Score = 43.3 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM---QFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I + +   +    P+     G AA
Sbjct: 348 GDTTAAQIRDARLDPKIKAIVLRVNSPGGSVTASEIIREELAAAKTAGKPVVVSMGGMAA 407

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----------- 149
           S G  + +             G  G+   +      L        G A+           
Sbjct: 408 SGGYWISTPADYIVANPSTLTGSIGIFGVINTVENTLGSIGVHTDGVATSPLADVSSTKA 467

Query: 150 ---DIERHAQD-IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
              ++++  Q  I    +R   +       T E++++        +  +A   G+VD
Sbjct: 468 LPPEVQQLMQLSIENGYQRFITLVANARKSTPEKIDQIAQGHVW-TGEDAKANGLVD 523


>gi|260592220|ref|ZP_05857678.1| signal peptide peptidase SppA, 67K type [Prevotella veroralis
           F0319]
 gi|260535854|gb|EEX18471.1| signal peptide peptidase SppA, 67K type [Prevotella veroralis
           F0319]
          Length = 612

 Score = 43.3 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 64/184 (34%), Gaps = 42/184 (22%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP--PISTFCMGQAAS 113
           A ++C  L  L  +   K + L +NS GG   A   I+  +  +K   P+     G AAS
Sbjct: 352 AQVVCKDLEKLTNDKDVKAVVLRVNSGGGSAYASEQIWHQIMELKKLKPVVVSMGGMAAS 411

Query: 114 MGSLLLSA------------GEKGMRFALPNARILLHQPSGG------------FSGQAS 149
               + +             G  G+    P+   LL +  G             F  Q+ 
Sbjct: 412 GAYYISAPSNWIVAEPTTLTGSIGIFGMFPDFSGLLTEKLGIKFDEVKTNKFSGFGTQSR 471

Query: 150 DIERHAQDIVKIKRRLNEIYV----------KNCGKTYEEVEKTLDRDHIMSASEACDWG 199
                 +++  + + +N  Y           K      E++ +     H+ S  +A   G
Sbjct: 472 PF--SEEEMAYLNQYINRGYKLFRHRVAEGRKKTDNQIEKIAQ----GHVYSGQDAMKIG 525

Query: 200 VVDK 203
           +VD+
Sbjct: 526 LVDQ 529


>gi|254466373|ref|ZP_05079784.1| enoyl-CoA hydratase/isomerase family protein [Rhodobacterales
           bacterium Y4I]
 gi|206687281|gb|EDZ47763.1| enoyl-CoA hydratase/isomerase family protein [Rhodobacterales
           bacterium Y4I]
          Length = 203

 Score = 43.3 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 46/114 (40%), Gaps = 21/114 (18%)

Query: 94  DTMQFIKP-PISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIE 152
           + M  +    ++      A     ++L+     +R A+P+A++       G+  Q SD  
Sbjct: 79  NAMAAVPCLKVAALNGTLAGGANGMVLAC---DIRIAVPSAKVFYPVMKLGYLPQPSDAG 135

Query: 153 RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           R A  I   + ++  I     G+               SA EA D+G+VD+++ 
Sbjct: 136 RMAALIGPARTKM--ILAA--GQKI-------------SAQEAYDYGLVDRIVE 172


>gi|161503605|ref|YP_001570717.1| protease 4 [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160864952|gb|ABX21575.1| hypothetical protein SARI_01684 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 618

 Score = 43.3 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 60/178 (33%), Gaps = 31/178 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM---QFIKPPISTFCMGQAA 112
                +Q+     +   K I L +NSPGG V A   I   +   +    P+     G AA
Sbjct: 349 GDTTASQIRDARLDPKVKAIVLRVNSPGGSVNASEVIRAELAAVKAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----------- 149
           S G  + +             G  G+   +      L        G ++           
Sbjct: 409 SGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLSSIGVHSDGVSTSPLAEISMTKA 468

Query: 150 ---DIERHAQD-IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
              ++++  Q  I    +R   +  +   +T E+++K        +  +A   G+VDK
Sbjct: 469 LSPEVQQMMQLSIEYGYKRFITLVAEARKRTPEQIDKIAQGHVW-TGQDAKANGLVDK 525


>gi|330997115|ref|ZP_08320968.1| signal peptide peptidase SppA [Paraprevotella xylaniphila YIT
           11841]
 gi|329570910|gb|EGG52617.1| signal peptide peptidase SppA [Paraprevotella xylaniphila YIT
           11841]
          Length = 587

 Score = 43.3 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 62/180 (34%), Gaps = 36/180 (20%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP--PISTFCMGQAAS 113
           A  +C  L  L  +   K + L INS GG   A   I+  ++ ++   P+     G AAS
Sbjct: 327 AETVCHDLRTLREDESVKAVVLRINSGGGSAYASEQIWHEVKLLRKAKPVVVSMGGMAAS 386

Query: 114 MGSLLLS------------AGEKGMRFALP------------NARILLHQPSGGFSGQA- 148
            G  +               G  G+   +P            +  ++       F   A 
Sbjct: 387 GGYYISCAANYIVAEPTTLTGSIGIFGLIPDASQLLSDKLGLHFDVVKTNAHADFGTPAR 446

Query: 149 ----SDIERHAQDIVKIKRRLNEIYVKNCGKTYE--EVEKTLDRDHIMSASEACDWGVVD 202
               S+ +     I +  +   E   +  G+  E  +VEK  +     +  +A + G+ D
Sbjct: 447 PFNPSEAQMMQGYIQRGYKLFTERVAE--GRNMETSQVEKLAEGRVW-TGQQAVENGLAD 503


>gi|325856625|ref|ZP_08172263.1| signal peptide peptidase SppA, 67K type [Prevotella denticola CRIS
           18C-A]
 gi|325483339|gb|EGC86314.1| signal peptide peptidase SppA, 67K type [Prevotella denticola CRIS
           18C-A]
          Length = 592

 Score = 43.3 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 41/179 (22%), Positives = 66/179 (36%), Gaps = 32/179 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP--PISTFCMGQAAS 113
           A  +C  L  L  +   K + L INS GG   A   I+  +  +K   P+     G AAS
Sbjct: 332 AQTVCKDLEALGKDKDVKAVVLRINSGGGSAYASEQIWHQIMKLKKLKPVVVSMGGMAAS 391

Query: 114 MGSLLLSA------------GEKGMRFALPNARILLHQPSG------------GFSGQAS 149
            G  + +             G  G+    P+A  L  +  G             F  QA 
Sbjct: 392 GGYYMSAPANWIVAEPTTITGSIGIFGMFPDASGLFAEKLGVKFDEVKTNRHSDFGTQAR 451

Query: 150 -----DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
                ++    Q + +  R       +    T E+VEK + + H+ +  +A   G+VD+
Sbjct: 452 PFTEEEMAFLGQYVDRGYRLFRHRVAEGRRMTDEQVEK-IAQGHVFTGQDARKIGLVDQ 509


>gi|194367369|ref|YP_002029979.1| signal peptide peptidase SppA, 67K type [Stenotrophomonas
           maltophilia R551-3]
 gi|194350173|gb|ACF53296.1| signal peptide peptidase SppA, 67K type [Stenotrophomonas
           maltophilia R551-3]
          Length = 640

 Score = 43.3 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 60/165 (36%), Gaps = 32/165 (19%)

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYD---TMQFIKPPISTFCMGQAASMGSLLLSA---- 121
           +   K + L +NSPGG V A   I      +Q    P+       AAS G  +       
Sbjct: 377 DENVKSVVLRVNSPGGEVFASEQIRREVVALQAAGKPVVVSMGDLAASGGYWISMNADRI 436

Query: 122 --------GEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK---------IKRR 164
                   G  G+   +PN    L +      G  +     A D+ +         I+  
Sbjct: 437 YADPSTITGSIGIFGMVPNFSRALDKIGVHTDGVGTTRFAGAFDVTRPMDPAVGQVIQSV 496

Query: 165 LNEIYVKNCG-------KTYEEVEKTLDRDHIMSASEACDWGVVD 202
           +N+ Y    G       K  E V++ + R  + S ++A + G+VD
Sbjct: 497 INKGYADFTGRVADARKKPVEAVDE-VARGRVWSGAQAKERGLVD 540


>gi|258645667|ref|ZP_05733136.1| signal peptide peptidase SppA [Dialister invisus DSM 15470]
 gi|260403034|gb|EEW96581.1| signal peptide peptidase SppA [Dialister invisus DSM 15470]
          Length = 315

 Score = 43.3 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 62/186 (33%), Gaps = 43/186 (23%)

Query: 56  ATLICAQLLFLEAENPQKEIS-----LYINSPGGVVTAGMAI---YDTMQFIKPPISTFC 107
           +  + ++ +  E E  +K+       L INSPGG   A   I    D ++    PI    
Sbjct: 64  SEGVSSEQVMYEMEQARKDNRVKGVLLRINSPGGSTGATQEIAEEMDKIKNAGKPIVVSM 123

Query: 108 MGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF--------------------SGQ 147
               AS G  L S G+    +   N   L                            SG 
Sbjct: 124 GDMCASAGYWLASKGD----YVFANPATLTGSIGVYMDYTNVEELMDKLGVKNEKIKSGA 179

Query: 148 ASDIE-----RHAQDIVKIKRRLNEIYVK--NC---GKTYEEVEKTLDRD-HIMSASEAC 196
             DI          +   ++  +++IY +       G+  EE       D  I++  +A 
Sbjct: 180 HKDILSMYRPMTGDEQKMLQTMVDDIYSQFVKTVADGRRMEESRVRSVADGRILTGQQAM 239

Query: 197 DWGVVD 202
           + G+VD
Sbjct: 240 ELGLVD 245


>gi|15607772|ref|NP_215146.1| enoyl-CoA hydratase [Mycobacterium tuberculosis H37Rv]
 gi|15840033|ref|NP_335070.1| enoyl-CoA hydratase [Mycobacterium tuberculosis CDC1551]
 gi|31791814|ref|NP_854307.1| enoyl-CoA hydratase [Mycobacterium bovis AF2122/97]
 gi|148660404|ref|YP_001281927.1| enoyl-CoA hydratase [Mycobacterium tuberculosis H37Ra]
 gi|148821834|ref|YP_001286588.1| enoyl-CoA hydratase [Mycobacterium tuberculosis F11]
 gi|167969060|ref|ZP_02551337.1| enoyl-CoA hydratase [Mycobacterium tuberculosis H37Ra]
 gi|215402405|ref|ZP_03414586.1| enoyl-CoA hydratase [Mycobacterium tuberculosis 02_1987]
 gi|215410177|ref|ZP_03418985.1| enoyl-CoA hydratase [Mycobacterium tuberculosis 94_M4241A]
 gi|215429465|ref|ZP_03427384.1| enoyl-CoA hydratase [Mycobacterium tuberculosis EAS054]
 gi|215444749|ref|ZP_03431501.1| enoyl-CoA hydratase [Mycobacterium tuberculosis T85]
 gi|218752278|ref|ZP_03531074.1| enoyl-CoA hydratase [Mycobacterium tuberculosis GM 1503]
 gi|219556474|ref|ZP_03535550.1| enoyl-CoA hydratase [Mycobacterium tuberculosis T17]
 gi|224989023|ref|YP_002643710.1| enoyl-CoA hydratase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253797570|ref|YP_003030571.1| enoyl-CoA hydratase echA3 [Mycobacterium tuberculosis KZN 1435]
 gi|254230964|ref|ZP_04924291.1| enoyl-CoA hydratase echA3 [Mycobacterium tuberculosis C]
 gi|254363585|ref|ZP_04979631.1| enoyl-CoA hydratase echA3 [Mycobacterium tuberculosis str. Haarlem]
 gi|254549590|ref|ZP_05140037.1| enoyl-CoA hydratase [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260185511|ref|ZP_05762985.1| enoyl-CoA hydratase [Mycobacterium tuberculosis CPHL_A]
 gi|260199637|ref|ZP_05767128.1| enoyl-CoA hydratase [Mycobacterium tuberculosis T46]
 gi|260203800|ref|ZP_05771291.1| enoyl-CoA hydratase [Mycobacterium tuberculosis K85]
 gi|289442024|ref|ZP_06431768.1| enoyl-CoA hydratase echA3 [Mycobacterium tuberculosis T46]
 gi|289446187|ref|ZP_06435931.1| enoyl-CoA hydratase echA3 [Mycobacterium tuberculosis CPHL_A]
 gi|289552884|ref|ZP_06442094.1| enoyl-CoA hydratase echA3 [Mycobacterium tuberculosis KZN 605]
 gi|289568569|ref|ZP_06448796.1| enoyl-CoA hydratase echA3 [Mycobacterium tuberculosis T17]
 gi|289573234|ref|ZP_06453461.1| enoyl-CoA hydratase echA3 [Mycobacterium tuberculosis K85]
 gi|289744348|ref|ZP_06503726.1| enoyl-CoA hydratase/isomerase [Mycobacterium tuberculosis 02_1987]
 gi|289752674|ref|ZP_06512052.1| enoyl-CoA hydratase echA3 [Mycobacterium tuberculosis EAS054]
 gi|289756714|ref|ZP_06516092.1| enoyl-CoA hydratase/isomerase [Mycobacterium tuberculosis T85]
 gi|289760755|ref|ZP_06520133.1| enoyl-CoA hydratase echA3 [Mycobacterium tuberculosis GM 1503]
 gi|294996148|ref|ZP_06801839.1| enoyl-CoA hydratase [Mycobacterium tuberculosis 210]
 gi|297633128|ref|ZP_06950908.1| enoyl-CoA hydratase [Mycobacterium tuberculosis KZN 4207]
 gi|297730108|ref|ZP_06959226.1| enoyl-CoA hydratase [Mycobacterium tuberculosis KZN R506]
 gi|298524122|ref|ZP_07011531.1| enoyl-CoA hydratase [Mycobacterium tuberculosis 94_M4241A]
 gi|306774740|ref|ZP_07413077.1| enoyl-CoA hydratase echA3 [Mycobacterium tuberculosis SUMu001]
 gi|306781530|ref|ZP_07419867.1| enoyl-CoA hydratase echA3 [Mycobacterium tuberculosis SUMu002]
 gi|306783278|ref|ZP_07421600.1| enoyl-CoA hydratase echA3 [Mycobacterium tuberculosis SUMu003]
 gi|306787647|ref|ZP_07425969.1| enoyl-CoA hydratase echA3 [Mycobacterium tuberculosis SUMu004]
 gi|306794413|ref|ZP_07432715.1| enoyl-CoA hydratase echA3 [Mycobacterium tuberculosis SUMu005]
 gi|306796383|ref|ZP_07434685.1| enoyl-CoA hydratase echA3 [Mycobacterium tuberculosis SUMu006]
 gi|306802243|ref|ZP_07438911.1| enoyl-CoA hydratase echA3 [Mycobacterium tuberculosis SUMu008]
 gi|306806451|ref|ZP_07443119.1| enoyl-CoA hydratase echA3 [Mycobacterium tuberculosis SUMu007]
 gi|306966651|ref|ZP_07479312.1| enoyl-CoA hydratase echA3 [Mycobacterium tuberculosis SUMu009]
 gi|306970844|ref|ZP_07483505.1| enoyl-CoA hydratase echA3 [Mycobacterium tuberculosis SUMu010]
 gi|307078569|ref|ZP_07487739.1| enoyl-CoA hydratase echA3 [Mycobacterium tuberculosis SUMu011]
 gi|307083133|ref|ZP_07492246.1| enoyl-CoA hydratase echA3 [Mycobacterium tuberculosis SUMu012]
 gi|313657435|ref|ZP_07814315.1| enoyl-CoA hydratase [Mycobacterium tuberculosis KZN V2475]
 gi|1877369|emb|CAB07121.1| PROBABLE ENOYL-CoA HYDRATASE ECHA3 (ENOYL HYDRASE) (UNSATURATED
           ACYL-CoA HYDRATASE) (CROTONASE) [Mycobacterium
           tuberculosis H37Rv]
 gi|3114219|gb|AAC15848.1| enoyl-coA hydratase homolog [Mycobacterium tuberculosis]
 gi|13880178|gb|AAK44884.1| enoyl-CoA hydratase/isomerase family protein [Mycobacterium
           tuberculosis CDC1551]
 gi|31617401|emb|CAD93511.1| PROBABLE ENOYL-COA HYDRATASE ECHA3 (ENOYL HYDRASE) (UNSATURATED
           ACYL-COA HYDRATASE) (CROTONASE) [Mycobacterium bovis
           AF2122/97]
 gi|124600023|gb|EAY59033.1| enoyl-CoA hydratase echA3 [Mycobacterium tuberculosis C]
 gi|134149099|gb|EBA41144.1| enoyl-CoA hydratase echA3 [Mycobacterium tuberculosis str. Haarlem]
 gi|148504556|gb|ABQ72365.1| enoyl-CoA hydratase EchA3 [Mycobacterium tuberculosis H37Ra]
 gi|148720361|gb|ABR04986.1| enoyl-CoA hydratase echA3 [Mycobacterium tuberculosis F11]
 gi|224772136|dbj|BAH24942.1| enoyl-CoA hydratase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253319073|gb|ACT23676.1| enoyl-CoA hydratase echA3 [Mycobacterium tuberculosis KZN 1435]
 gi|289414943|gb|EFD12183.1| enoyl-CoA hydratase echA3 [Mycobacterium tuberculosis T46]
 gi|289419145|gb|EFD16346.1| enoyl-CoA hydratase echA3 [Mycobacterium tuberculosis CPHL_A]
 gi|289437516|gb|EFD20009.1| enoyl-CoA hydratase echA3 [Mycobacterium tuberculosis KZN 605]
 gi|289537665|gb|EFD42243.1| enoyl-CoA hydratase echA3 [Mycobacterium tuberculosis K85]
 gi|289542323|gb|EFD45971.1| enoyl-CoA hydratase echA3 [Mycobacterium tuberculosis T17]
 gi|289684876|gb|EFD52364.1| enoyl-CoA hydratase/isomerase [Mycobacterium tuberculosis 02_1987]
 gi|289693261|gb|EFD60690.1| enoyl-CoA hydratase echA3 [Mycobacterium tuberculosis EAS054]
 gi|289708261|gb|EFD72277.1| enoyl-CoA hydratase echA3 [Mycobacterium tuberculosis GM 1503]
 gi|289712278|gb|EFD76290.1| enoyl-CoA hydratase/isomerase [Mycobacterium tuberculosis T85]
 gi|298493916|gb|EFI29210.1| enoyl-CoA hydratase [Mycobacterium tuberculosis 94_M4241A]
 gi|308216633|gb|EFO76032.1| enoyl-CoA hydratase echA3 [Mycobacterium tuberculosis SUMu001]
 gi|308325699|gb|EFP14550.1| enoyl-CoA hydratase echA3 [Mycobacterium tuberculosis SUMu002]
 gi|308331939|gb|EFP20790.1| enoyl-CoA hydratase echA3 [Mycobacterium tuberculosis SUMu003]
 gi|308335724|gb|EFP24575.1| enoyl-CoA hydratase echA3 [Mycobacterium tuberculosis SUMu004]
 gi|308337303|gb|EFP26154.1| enoyl-CoA hydratase echA3 [Mycobacterium tuberculosis SUMu005]
 gi|308343160|gb|EFP32011.1| enoyl-CoA hydratase echA3 [Mycobacterium tuberculosis SUMu006]
 gi|308347099|gb|EFP35950.1| enoyl-CoA hydratase echA3 [Mycobacterium tuberculosis SUMu007]
 gi|308351042|gb|EFP39893.1| enoyl-CoA hydratase echA3 [Mycobacterium tuberculosis SUMu008]
 gi|308355674|gb|EFP44525.1| enoyl-CoA hydratase echA3 [Mycobacterium tuberculosis SUMu009]
 gi|308359629|gb|EFP48480.1| enoyl-CoA hydratase echA3 [Mycobacterium tuberculosis SUMu010]
 gi|308363485|gb|EFP52336.1| enoyl-CoA hydratase echA3 [Mycobacterium tuberculosis SUMu011]
 gi|308367140|gb|EFP55991.1| enoyl-CoA hydratase echA3 [Mycobacterium tuberculosis SUMu012]
 gi|323720987|gb|EGB30052.1| enoyl-CoA hydratase echA3 [Mycobacterium tuberculosis CDC1551A]
 gi|326905147|gb|EGE52080.1| enoyl-CoA hydratase echA3 [Mycobacterium tuberculosis W-148]
 gi|328457351|gb|AEB02774.1| enoyl-CoA hydratase echA3 [Mycobacterium tuberculosis KZN 4207]
          Length = 231

 Score = 43.3 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 45/120 (37%), Gaps = 24/120 (20%)

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           +     P+   C G A +MG+ LLS G+   R A     I  ++ + G +     I   A
Sbjct: 89  LLSYPKPVVMACTGHAIAMGAFLLSCGDH--RVAAHAYNIQANEVAIGMT-----IPYAA 141

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD-----KVLMSRID 210
            +I+K++      Y +  G                    A   G +D     +V++SR +
Sbjct: 142 LEIMKLRLT-RSAYQQATGLAK----------TFF-GETALAAGFIDEIALPEVVVSRAE 189


>gi|313204613|ref|YP_004043270.1| signal peptide peptidase a [Paludibacter propionicigenes WB4]
 gi|312443929|gb|ADQ80285.1| signal peptide peptidase A [Paludibacter propionicigenes WB4]
          Length = 587

 Score = 43.3 bits (101), Expect = 0.024,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 75/199 (37%), Gaps = 36/199 (18%)

Query: 41  KERIVFVTGQIEDHMATLICAQLLFLEAENPQKE-----ISLYINSPGGVVTAGMAIYDT 95
           K  +++  G+I D     I A+ +     +  K+     + L ++SPGG   A   I+  
Sbjct: 309 KVAVIYAIGEITDTEGDEIVARDMVKTINDVAKDSAVKAVVLRVSSPGGSAYASEQIWHA 368

Query: 96  --MQFIKPPISTFCMGQAASMGSLLLSAGEK------------GMRFALPNARILLHQPS 141
             M   K P+       AAS G  +    +K            G+  A+PN + L  +  
Sbjct: 369 LSMLKAKKPLIVSMGDYAASGGYYISCLADKIIAQPNTITGSIGIFGAIPNIKGLNEKLG 428

Query: 142 GGFSG-----QASDIERHAQDIVKIKRRL-------NEIYVKNCGK----TYEEVEKTLD 185
             + G      +  I  +     + +  +        E++VK C +      E+++   +
Sbjct: 429 LTYDGVKTNKMSDGISINRSFTPEERDLMQNYVNRGYELFVKRCAQGRKMKVEQIKAIAE 488

Query: 186 RDHIMSASEACDWGVVDKV 204
                +  +A   G+VDK+
Sbjct: 489 GRVW-TGEDAIKIGLVDKI 506


>gi|215425867|ref|ZP_03423786.1| enoyl-CoA hydratase [Mycobacterium tuberculosis T92]
 gi|289749133|ref|ZP_06508511.1| enoyl-CoA hydratase echA3 [Mycobacterium tuberculosis T92]
 gi|289689720|gb|EFD57149.1| enoyl-CoA hydratase echA3 [Mycobacterium tuberculosis T92]
          Length = 231

 Score = 43.3 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 45/120 (37%), Gaps = 24/120 (20%)

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           +     P+   C G A +MG+ LLS G+   R A     I  ++ + G +     I   A
Sbjct: 89  LLSYPKPVVMACTGHAIAMGAFLLSCGDH--RVAAHAYNIQANEVAIGMT-----IPYAA 141

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD-----KVLMSRID 210
            +I+K++      Y +  G                    A   G +D     +V++SR +
Sbjct: 142 LEIMKLRLT-RSAYQQATGLAK----------TFF-GETALAAGFIDEIALPEVVVSRAE 189


>gi|331683273|ref|ZP_08383874.1| signal peptide peptidase SppA, 67K type [Escherichia coli H299]
 gi|331079488|gb|EGI50685.1| signal peptide peptidase SppA, 67K type [Escherichia coli H299]
          Length = 618

 Score = 43.3 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 349 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    DI     
Sbjct: 409 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADISITKA 468

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 469 LPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 524


>gi|331663248|ref|ZP_08364158.1| signal peptide peptidase SppA, 67K type [Escherichia coli TA143]
 gi|331059047|gb|EGI31024.1| signal peptide peptidase SppA, 67K type [Escherichia coli TA143]
          Length = 622

 Score = 42.9 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 353 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 412

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    DI     
Sbjct: 413 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADISITKA 472

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 473 LPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 528


>gi|121636551|ref|YP_976774.1| enoyl-CoA hydratase [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|121492198|emb|CAL70665.1| Probable enoyl-CoA hydratase echA3 [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
          Length = 231

 Score = 42.9 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 45/120 (37%), Gaps = 24/120 (20%)

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           +     P+   C G A +MG+ LLS G+   R A     I  ++ + G +     I   A
Sbjct: 89  LLSYPKPVVMACTGHAIAMGAFLLSCGDH--RVAAHAYNIQANEVAIGMT-----IPYAA 141

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD-----KVLMSRID 210
            +I+K++      Y +  G                    A   G +D     +V++SR +
Sbjct: 142 LEIMKLRLT-RSAYQQATGLAK----------TFF-GETALAAGFIDEIALPEVMVSRAE 189


>gi|147828564|emb|CAN59881.1| hypothetical protein VITISV_014403 [Vitis vinifera]
          Length = 443

 Score = 42.9 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 2/47 (4%)

Query: 83  GGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           GG VTAGMAI+DTM+ I+P + T C+G AA   +++   G +  ++ 
Sbjct: 218 GGXVTAGMAIFDTMRHIRPDVPTVCVGLAA--VAMIAKRGPRHGKYM 262


>gi|310767792|gb|ADP12742.1| protease 4 [Erwinia sp. Ejp617]
          Length = 618

 Score = 42.9 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 58/164 (35%), Gaps = 31/164 (18%)

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTM---QFIKPPISTFCMGQAAS------------ 113
           +   K I   +NSPGG VTA   I + +   +    P+     G AAS            
Sbjct: 362 DPKIKAIVFRVNSPGGSVTASETIREELAAAKEAGKPVVVSMGGMAASGGYWVSTPANYI 421

Query: 114 MGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS--------------DIERHAQD-I 158
           + S     G  G+   +      L        G A+              ++++  Q  I
Sbjct: 422 IASPNTLTGSIGIFGVINTVESSLDAIGVHTDGVATSPLADVASTKALPPEVQQMMQLSI 481

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
            K  +    +  K+  KT EE++K        + S+A   G++D
Sbjct: 482 DKGYQNFIGLVAKSRNKTSEEIDKIAQGHVW-TGSDAKAKGLID 524


>gi|299144162|ref|ZP_07037242.1| nodulation efficiency protein D (NfeD) [Peptoniphilus sp. oral
           taxon 386 str. F0131]
 gi|298518647|gb|EFI42386.1| nodulation efficiency protein D (NfeD) [Peptoniphilus sp. oral
           taxon 386 str. F0131]
          Length = 426

 Score = 42.9 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 69/183 (37%), Gaps = 26/183 (14%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPI 103
           I+ +  +I   MAT +   +   E +     I   I++ GG + A   I + +   K P 
Sbjct: 28  IIPIKSEINSAMATYVRDSIKNAE-DKKSPLIIFEIDTYGGSIIAAEKIKNYIIDSKIPT 86

Query: 104 STFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKR 163
             F   +A S G L+  A +             ++       G A  I +  ++I   K 
Sbjct: 87  VAFVNNKAESAGVLITIACKN------------VYMSKTATIGSAETIPKTEKNISFWKG 134

Query: 164 RLNEIYVKNCGKTYEEVEKTLDRDHI------------MSASEACDWGVVDKVLMSRIDI 211
            L +   +  G+  + +E   D D              +++ E+ D G+ D V  +  DI
Sbjct: 135 MLRDT-AQYRGRNEQIIESMADSDIYIPMIIEKGKLTNLTSKESLDLGISDGVANNYEDI 193

Query: 212 EEK 214
            ++
Sbjct: 194 LKQ 196


>gi|259908290|ref|YP_002648646.1| protease 4 [Erwinia pyrifoliae Ep1/96]
 gi|224963912|emb|CAX55416.1| Protease IV [Erwinia pyrifoliae Ep1/96]
 gi|283478224|emb|CAY74140.1| protease IV [Erwinia pyrifoliae DSM 12163]
          Length = 618

 Score = 42.9 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 58/164 (35%), Gaps = 31/164 (18%)

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTM---QFIKPPISTFCMGQAAS------------ 113
           +   K I   +NSPGG VTA   I + +   +    P+     G AAS            
Sbjct: 362 DPKIKAIVFRVNSPGGSVTASETIREELAAAKEAGKPVVVSMGGMAASGGYWVSTPANYI 421

Query: 114 MGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS--------------DIERHAQD-I 158
           + S     G  G+   +      L        G A+              ++++  Q  I
Sbjct: 422 IASPNTLTGSIGIFGVINTVESSLDAIGVHTDGVATSPLADVASTKALPPEVQQMMQLSI 481

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
            K  +    +  K+  KT EE++K        + S+A   G++D
Sbjct: 482 DKGYQNFIGLVAKSRNKTSEEIDKIAQGHVW-TGSDAKAKGLID 524


>gi|78779664|ref|YP_397776.1| signal peptide peptidase A [Prochlorococcus marinus str. MIT 9312]
 gi|78713163|gb|ABB50340.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49
           [Prochlorococcus marinus str. MIT 9312]
          Length = 269

 Score = 42.9 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 69/205 (33%), Gaps = 35/205 (17%)

Query: 33  YDIYSRLLKERI--VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGM 90
              + R  K+R+  + +   I       +   L  +E       I + I+SPGG V    
Sbjct: 2   IWPFRRKSKKRMARILIDEPITSSTRVSVLKALKQIEDREFPALI-VRIDSPGGTVGDSQ 60

Query: 91  AIYDTMQFIK---PPISTFCMGQAASMGSLL------------LSAGEKGMRFALPNARI 135
            IY  ++ +K     +       +AS G  +               G  G+     N   
Sbjct: 61  EIYSAIKRLKDKGCKVIASFGNISASGGVYIGVASDKIVANPGTITGSIGVIIRGNNLSE 120

Query: 136 LLHQPSGGF----SGQASDI------------ERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
           LL +    F    SG   DI                  I +  ++  E   +      EE
Sbjct: 121 LLDKVGIKFETVKSGVFKDILSPDKPLSEEGRRLLQGLIDESYKQFTEAVAEGRNLPVEE 180

Query: 180 VEKTLDRDHIMSASEACDWGVVDKV 204
           V K  D   I + ++A + G+VD++
Sbjct: 181 VRKFSD-GRIFTGTQAKELGLVDEI 204


>gi|146319204|ref|YP_001198916.1| ATP-dependent Clp protease proteolytic subunit [Streptococcus suis
           05ZYH33]
 gi|145690010|gb|ABP90516.1| ATP-dependent CLP protease proteolytic subunit [Streptococcus suis
           05ZYH33]
          Length = 51

 Score = 42.9 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 2/49 (4%)

Query: 114 MGSLLLSAGEKGMRFALPNARILLHQP--SGGFSGQASDIERHAQDIVK 160
           MG+++ S+G KG RF LPNA  ++HQP    G   Q +D+   A+ + K
Sbjct: 1   MGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLFK 49


>gi|256810518|ref|YP_003127887.1| signal peptide peptidase SppA, 36K type [Methanocaldococcus fervens
           AG86]
 gi|256793718|gb|ACV24387.1| signal peptide peptidase SppA, 36K type [Methanocaldococcus fervens
           AG86]
          Length = 311

 Score = 42.9 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 71/188 (37%), Gaps = 31/188 (16%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAG--MAIYDTMQFIKPPISTFCMGQAAS 113
           A      L  LE ++  K + L +NSPGG V A   +A        K P+  +  G  AS
Sbjct: 69  ARYYINLLDDLEKDDSVKGVLLVVNSPGGEVIASEKLARKVEELANKKPVVVYVEGLDAS 128

Query: 114 MGSLLLSA------------GEKGMRFALPNARILLH----QPSGGFSGQASDI-----E 152
              ++ +             G  G+R  + +   L+       +   +G+  DI      
Sbjct: 129 GAYMVSAPADYIVAEKHSIVGSIGVRMDVMHYYGLMKKLGVNVTTIKAGKYKDIGSPFRP 188

Query: 153 RHAQDIVKIKRRLNEIY-------VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
              ++   +++ +NE Y        ++ G +     K  D   I S  +A   G+VD+V 
Sbjct: 189 MTEEEREYLQKMINETYMDFVEWVAEHRGLSINYTLKIAD-GKIYSGEDAKKVGLVDEVG 247

Query: 206 MSRIDIEE 213
                +++
Sbjct: 248 TEETALKK 255


>gi|212710743|ref|ZP_03318871.1| hypothetical protein PROVALCAL_01811 [Providencia alcalifaciens DSM
           30120]
 gi|212686440|gb|EEB45968.1| hypothetical protein PROVALCAL_01811 [Providencia alcalifaciens DSM
           30120]
          Length = 617

 Score = 42.9 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 66/192 (34%), Gaps = 37/192 (19%)

Query: 46  FVTGQIEDHMA--TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM---QFIK 100
            + G     +A    + AQ+      +  K I L +NSPGG V+A   I + +   +  K
Sbjct: 339 IMDGPQTPGIAGGETLAAQIRDARLNDNIKAIVLRVNSPGGSVSASDLIRNELAAARAAK 398

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNA---------RILLHQPSGGFSGQASDI 151
            P+     G AAS G  + +  +     A P+           I   + S    G  +D 
Sbjct: 399 KPVVVSMGGMAASGGYWISTPAD--YIIASPSTLTGSIGIFGVINTFENSLESIGVYTDG 456

Query: 152 E-------------RHAQDIVKIKRRLNEIYVKNCG-------KTYEEVEKTLDRDHIMS 191
                            Q    ++  +   Y    G       KT EE++K       + 
Sbjct: 457 VSTSPLAGVSVTKGISPQFADMMQITIENGYQTFIGLVAQSRHKTPEEIDKIAQGRVWI- 515

Query: 192 ASEACDWGVVDK 203
             +A   G+VD+
Sbjct: 516 GKDALKIGLVDQ 527


>gi|126458778|ref|YP_001055056.1| peptidase S49 [Pyrobaculum calidifontis JCM 11548]
 gi|126248499|gb|ABO07590.1| peptidase S49 [Pyrobaculum calidifontis JCM 11548]
          Length = 612

 Score = 42.9 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 64/183 (34%), Gaps = 28/183 (15%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPI 103
           +V V   I D+    +   +  LE ++    + L INSPGG V A   +Y T+  +    
Sbjct: 90  VVPVDFAIYDYEVDFLVKYVKRLEFDDRVAGVVLLINSPGGAVGATERLYSTIAGLNKTK 149

Query: 104 STFCMGQAASMGSLLLSAGEKGMRFALPN----------------------ARILLHQPS 141
                G  AS       A EK   +A P+                        I    P 
Sbjct: 150 YAVIAGLGASGAYYTAVAAEKI--YATPSSWVGSVGVIALIAPEDYLAEVPDWIYTTGPW 207

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
             +     D+     D+ K +       +K  G   +++ K ++   I  A EA   G++
Sbjct: 208 KYYG---KDLLALYDDVEKTRENFVNAVLKGRGDRLKDL-KAVETAEIFRADEALRIGLI 263

Query: 202 DKV 204
           D +
Sbjct: 264 DAI 266


>gi|315230248|ref|YP_004070684.1| protease IV [Thermococcus barophilus MP]
 gi|315183276|gb|ADT83461.1| protease IV [Thermococcus barophilus MP]
          Length = 338

 Score = 42.9 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 2/83 (2%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ--FIKP 101
           I+ + G I+++MA  + +++  ++       + L+I SPGG V     IY  ++      
Sbjct: 98  ILPIMGPIDENMALDVVSKIRQIKENESIGGVLLWIESPGGYVGPVRVIYKELKKLSYSK 157

Query: 102 PISTFCMGQAASMGSLLLSAGEK 124
           P+  +  G A S G  +  A +K
Sbjct: 158 PVVAYTGGYADSGGYFIACAADK 180


>gi|24216571|ref|NP_714052.1| periplasmic serine protease [Leptospira interrogans serovar Lai
           str. 56601]
 gi|24197892|gb|AAN51070.1| periplasmic serine protease [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 317

 Score = 42.9 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 70/191 (36%), Gaps = 31/191 (16%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP--PISTFCMGQAAS 113
           +  I  +L  +E     K I + INSPGG V A   +Y+ +  ++    I       AAS
Sbjct: 72  SESILQKLRDIEQNPNIKGILIEINSPGGTVGASQEVYNELMRLRKTRKIVVSMKDMAAS 131

Query: 114 MGSLLLSAGEK------------GMRFALPNARILLH----QPSGGFSGQASDI------ 151
            G  + SA +K            G+    PN + LL     +      G+  D       
Sbjct: 132 GGYYIASAADKIFALSGTITGSIGVIAMAPNIKGLLDRYGVKMRTYKEGKYKDSLSLFRD 191

Query: 152 ------ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
                 E   + +        +   K   +T + V+   +   I S  +A    +VD++ 
Sbjct: 192 STPEEDEMIQKMLSDTYNEFIQDVAKGRNQTVKSVQNLAE-GKIYSGQDAFRNKLVDEIG 250

Query: 206 MSRIDIEEKSK 216
             +  +EE S+
Sbjct: 251 GRKEALEELSR 261


>gi|257386269|ref|YP_003176042.1| peptidase S49 [Halomicrobium mukohataei DSM 12286]
 gi|257168576|gb|ACV46335.1| peptidase S49 [Halomicrobium mukohataei DSM 12286]
          Length = 307

 Score = 42.9 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 65/189 (34%), Gaps = 43/189 (22%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI--KPP 102
           V + G I    A  +  QL  L  ++    + L I+S GG V A  A Y  ++ +  + P
Sbjct: 50  VTIQGPISGPTADEVTRQLRTLRTDDSIDAVVLRIDSGGGSVAASEAQYRAVKRLAREKP 109

Query: 103 ISTFCMGQAASMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSG---- 146
           + T   G AAS                    G  G+R  +P    +   P    +G    
Sbjct: 110 VVTSVRGVAASGAYYTALPSDEIYATPGGLVGSVGVRALIPQPDGV---PRSVTTGPDKA 166

Query: 147 ---QASDIERHAQDIVKIKRRLNEIYVKN--------CGKTYEEVEKTLDRDHIMSASEA 195
                 DI    + +   +  ++ +Y +            T  +V          S + A
Sbjct: 167 GGLTGDDIRGQVETLK--RSFVDSVYAERGDRLSLSRTELTNAKVY---------SGAAA 215

Query: 196 CDWGVVDKV 204
            D G+ D++
Sbjct: 216 VDNGLADEI 224


>gi|218888246|ref|YP_002437567.1| signal peptide peptidase SppA, 36K type [Desulfovibrio vulgaris
           str. 'Miyazaki F']
 gi|218759200|gb|ACL10099.1| signal peptide peptidase SppA, 36K type [Desulfovibrio vulgaris
           str. 'Miyazaki F']
          Length = 335

 Score = 42.9 bits (100), Expect = 0.031,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 67/199 (33%), Gaps = 40/199 (20%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           S L +ER           M   + AQL     +   K + + I+SPGG VTA   +Y  +
Sbjct: 71  SGLFRER---------PGMVQEVVAQLRLAAEDPDVKAVIVAIDSPGGGVTASDVLYHEL 121

Query: 97  QFIK----PPISTFCMGQAASMGSLLLS------------AGEKGMRFALPNARILLHQP 140
              +      +    M  AAS G                  G  G+ F  P    L+ + 
Sbjct: 122 MRHRERTGQKVVALMMDTAASGGYYTALAADRIVAHPSTVTGSIGVIFLRPEVAGLMDKI 181

Query: 141 SGGF----SGQASDIERHAQD-IVKIKRRLNEIYVKNCGKTYEEV----------EKTLD 185
                   SG+  D+    ++   + +     I     G+    V          E    
Sbjct: 182 GVRAVVSKSGEHKDMGSPFREGTDEERALFQSIIADMNGRFQGLVRERRPASHGHEAAFA 241

Query: 186 RDHIMSASEACDWGVVDKV 204
              I++A +A   G+VD++
Sbjct: 242 DARILTARQALAAGLVDRI 260


>gi|313892633|ref|ZP_07826220.1| signal peptide peptidase SppA, 36K type [Dialister microaerophilus
           UPII 345-E]
 gi|313119030|gb|EFR42235.1| signal peptide peptidase SppA, 36K type [Dialister microaerophilus
           UPII 345-E]
          Length = 316

 Score = 42.9 bits (100), Expect = 0.032,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 68/189 (35%), Gaps = 35/189 (18%)

Query: 46  FVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPP 102
            + G +    +  I  +L     +   K + L INSPGG   A   I    D ++    P
Sbjct: 62  MLGG-VSGSSSEDIMYELREATRDPNAKAVLLRINSPGGTTGATQEIAEEIDKVRNSGKP 120

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALP-------NARILLHQPSGGF----------- 144
           +        AS G  L S G+    FA P          +     S              
Sbjct: 121 VIVSMGDTCASAGYWLASKGD--YIFASPATITGSIGVYMDYTNVSELMDKLGVKNEKIK 178

Query: 145 SGQASDIE-----RHAQDIVKIKRRLNEIYVKNC-----GKTYEEVE-KTLDRDHIMSAS 193
           SG   DI         ++   +++ +++IY +       G+  EE + + +    I++  
Sbjct: 179 SGTHKDILSMYRPITDEEKTILQKMVDDIYNQFVQTIADGRHLEEAKVREIADGRILTGK 238

Query: 194 EACDWGVVD 202
           +A  +G+VD
Sbjct: 239 QAQAYGLVD 247


>gi|311745841|ref|ZP_07719626.1| signal peptide peptidase SppA, 67K type [Algoriphagus sp. PR1]
 gi|126576044|gb|EAZ80322.1| signal peptide peptidase SppA, 67K type [Algoriphagus sp. PR1]
          Length = 588

 Score = 42.9 bits (100), Expect = 0.032,   Method: Composition-based stats.
 Identities = 45/176 (25%), Positives = 72/176 (40%), Gaps = 33/176 (18%)

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP--PISTFCMGQAASMGSLLLSA----- 121
           ++  K I L +NSPGG V A   I+  M   K   P+       AAS G  + +      
Sbjct: 341 DDNIKAIVLRVNSPGGSVLASEVIWREMTEAKKAKPLYVSMGEVAASGGYYISAPADTIV 400

Query: 122 -------GEKGMRFALPNARILLHQPSGGFS-----GQASDIERHAQDIVKIKRRLNEIY 169
                  G  G+     NA+ LL++  G  S     GQ SD     +++  I+R++ +  
Sbjct: 401 AQPNTITGSIGIFGIWFNAQELLNEKLGITSDVVETGQLSDFMNPTRELTDIERKIVQTN 460

Query: 170 VKN---C---------GKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
           V+              G + E V++        + ++A + G+VD VL S  D  E
Sbjct: 461 VEKGYETFISRVSEGRGMSAEAVKEVASGRVW-TGNQAKERGLVD-VLGSLDDTIE 514


>gi|163742342|ref|ZP_02149729.1| periplasmic protein-like protein [Phaeobacter gallaeciensis 2.10]
 gi|161384292|gb|EDQ08674.1| periplasmic protein-like protein [Phaeobacter gallaeciensis 2.10]
          Length = 177

 Score = 42.5 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 9/106 (8%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPI 103
           ++ +TG+I +  AT     L  LEA   Q    +Y+NSPGG V+  + I   ++      
Sbjct: 17  VLTLTGRISEGDATRFSDYLETLEALPSQ----VYLNSPGGSVSDALTIGRALRARDMNT 72

Query: 104 STFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
                    S    +L+AG    R A  +A I +HQ    + GQ +
Sbjct: 73  VMSASDICLSACPYILAAG--VSRIADADAMIGVHQ---HYFGQNT 113


>gi|325108414|ref|YP_004269482.1| hypothetical protein Plabr_1850 [Planctomyces brasiliensis DSM
           5305]
 gi|324968682|gb|ADY59460.1| hypothetical protein Plabr_1850 [Planctomyces brasiliensis DSM
           5305]
          Length = 208

 Score = 42.5 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 46/128 (35%), Gaps = 6/128 (4%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +Y +S GG V   +++   ++      +   +G+ +S    LL       R+  P + +L
Sbjct: 60  IYFDSNGGSVYTSLSLMSLIRLRNLDATGVVLGECSSAA--LLPFAACRRRYVTPFSTLL 117

Query: 137 LHQPSGGFSGQA--SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
            H             +    A+    I++  + +  +      + ++   +    +S  E
Sbjct: 118 FHAMKWESEENVRLHEAAEWARHFQAIEKHFDGLLAQLFDADPQLLQSWTEPGRFISGEE 177

Query: 195 -ACDWGVV 201
            A   G+ 
Sbjct: 178 LAKA-GLA 184


>gi|114705946|ref|ZP_01438849.1| hypothetical protein FP2506_15809 [Fulvimarina pelagi HTCC2506]
 gi|114538792|gb|EAU41913.1| hypothetical protein FP2506_15809 [Fulvimarina pelagi HTCC2506]
          Length = 332

 Score = 42.5 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 5/99 (5%)

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            L+++SPGG V   + +   ++           G  AS   L+ + G    R A  ++ +
Sbjct: 148 RLFLHSPGGSVEDALQMARDLRADGISTEVPADGYCASACPLVFAGGLT--RLAGASSWV 205

Query: 136 LLHQPSG---GFSGQASDIERHAQDIVKIKRRLNEIYVK 171
            LHQ           A D++R   DI +   R  ++   
Sbjct: 206 GLHQVYAAEIPGMPNARDLDRSISDIQQTIARAQQLLAD 244


>gi|226356235|ref|YP_002785975.1| peptidase S49 [Deinococcus deserti VCD115]
 gi|226318225|gb|ACO46221.1| putative peptidase S49, Signal peptide peptidase (SPPase)
           [Deinococcus deserti VCD115]
          Length = 533

 Score = 42.5 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 70/189 (37%), Gaps = 34/189 (17%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPI 103
           +  + G +    +  + A L   + +   K I +Y+NS GG   A   ++  +   + P+
Sbjct: 282 LPLMGGPMAG--SDTVVAALKRAKEDKKTKAIVVYVNSGGGSALASDLMWREIATSEKPV 339

Query: 104 STFCMGQAASMGSLLLS-------------------AGEKGMR-FALPNA---------R 134
                  AAS G  L +                   +G+  MR F   +          R
Sbjct: 340 VVVMGEYAASGGYYLATHARHIVASPYTLTGSIGVVSGKPIMREFNARHGLKPERVGRER 399

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
            L+H  S  ++    + +   + I ++  R      +    + E V + + R  I +  +
Sbjct: 400 ALMHSASQPYT--VEERQHVERAIAEVYDRFITRVAEGRKLSKERVNE-IGRGRIWAGQD 456

Query: 195 ACDWGVVDK 203
           A + G+VD+
Sbjct: 457 ALELGLVDE 465


>gi|304570504|ref|YP_003004.2| PfaP [Leptospira interrogans serovar Copenhageni str. Fiocruz
           L1-130]
          Length = 290

 Score = 42.5 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 70/191 (36%), Gaps = 31/191 (16%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP--PISTFCMGQAAS 113
           +  I  +L  +E     K I + INSPGG V A   +Y+ +  ++    I       AAS
Sbjct: 45  SESILQKLRDIEQNPNIKGILIEINSPGGTVGASQEVYNELMRLRKTRKIVVSMKDMAAS 104

Query: 114 MGSLLLSAGEK------------GMRFALPNARILLH----QPSGGFSGQASDI------ 151
            G  + SA +K            G+    PN + LL     +      G+  D       
Sbjct: 105 GGYYIASAADKIFALSGTITGSIGVIAMAPNIKGLLDRYGVKMRTYKEGKYKDSLSLFRD 164

Query: 152 ------ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
                 E   + +        +   K   +T + V+   +   I S  +A    +VD++ 
Sbjct: 165 STPEEDEMIQKMLSDTYNEFIQDVAKGRNQTVKSVQNLAE-GKIYSGQDAFRNKLVDEIG 223

Query: 206 MSRIDIEEKSK 216
             +  +EE S+
Sbjct: 224 GRKEALEELSR 234


>gi|319760105|ref|YP_004124044.1| peptidase S49 [Alicycliphilus denitrificans BC]
 gi|317119711|gb|ADV02199.1| peptidase S49 [Alicycliphilus denitrificans BC]
          Length = 315

 Score = 42.5 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 69/196 (35%), Gaps = 39/196 (19%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM----QFIKPPIS 104
            +I       + A+    ++ +    + LYI+SPGG       I   +    Q    P+ 
Sbjct: 78  TKINADSVNKLLAKAFDDDSASA---VVLYIDSPGGSPAEADRIGSFIARKKQETGKPLY 134

Query: 105 TFCMGQAASMGSLLLSAGEKG----MRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
           + C    AS G ++   G++              IL         G+   ++ +A    K
Sbjct: 135 SVCANMCASAGYMIAMHGDEIYASKYSLIGSIGAILSSWNFSQAIGKVG-VQHNAYASGK 193

Query: 161 IKRRLN-------------EIYVKNCGKTY-EEVE-----KTLDR------DHIMSASEA 195
           +K  LN             +  V   GK + E+V      K   +      +   S  EA
Sbjct: 194 LKAMLNPYAPVKAGDVEKAQELVDGMGKVFAEQVRFYRKGKLTSKVDLFTGEVW-SGEEA 252

Query: 196 CDWGVVDKVLMSRIDI 211
             +G+VD V+ +  D+
Sbjct: 253 KTYGLVD-VIGTLDDV 267


>gi|291288840|ref|YP_003505656.1| signal peptide peptidase SppA, 36K type [Denitrovibrio acetiphilus
           DSM 12809]
 gi|290886000|gb|ADD69700.1| signal peptide peptidase SppA, 36K type [Denitrovibrio acetiphilus
           DSM 12809]
          Length = 288

 Score = 42.5 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 62/171 (36%), Gaps = 27/171 (15%)

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL-------- 119
           A    K I L INSPGGV+     IY+ +  +K P+       AAS G  +         
Sbjct: 65  ANEKVKGIILEINSPGGVIAPTQVIYNRIMKMKKPVYAVMESVAASGGYYIAVAADEVYA 124

Query: 120 ----SAGEKGMRFALPNARILLHQPSGGF----SGQASDIERHAQDIVKI-KRRLNEIYV 170
               + G  G+     N   L+ +         SG+  D+    +D+    K  +  +  
Sbjct: 125 LESTTTGSIGVIMQYSNVEELMSKIGIKSVVFKSGKLKDVPSPTRDLSYSEKEYMQAMIS 184

Query: 171 KNCGKTYEE------VEKTLDRD----HIMSASEACDWGVVDKVLMSRIDI 211
           +   +   +      + +   RD     + S  +A +  ++DK+      +
Sbjct: 185 EFYEQFLRDVLKRRSISEDKLRDLADGRVFSGRQAVELKLIDKIGTREEAV 235


>gi|73662359|ref|YP_301140.1| putative protease [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72494874|dbj|BAE18195.1| putative protease [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 330

 Score = 42.5 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 62/178 (34%), Gaps = 35/178 (19%)

Query: 61  AQLLFLEAENPQKEIS---LYINSPGGVVTAGMAIYDTMQFIK---PPISTFCMGQAASM 114
           A L  L+       I    L +N+PGG       IY+ ++ IK     I       AAS 
Sbjct: 85  AFLKQLDNVKKDDSIKGVLLTVNTPGGGTYPSDEIYEKIKEIKQKHKKIYVHMDSMAASG 144

Query: 115 GSLLLSAGEKGM-----------RFALPNARILLHQPSGGFS-----GQASDIERHAQDI 158
           G  + +  +K                       L +  G        G+  DI   ++++
Sbjct: 145 GYYISAPADKIYAGPQTMTGSIGVIMSSIDYSGLQKNLGIKQNVIKSGEHKDILSSSREM 204

Query: 159 VKIKRRLNEIYVKNC----------GK--TYEEVEKTLDRDHIMSASEACDWGVVDKV 204
              +R + +  + +           G+     +V K  D   I SA +A   G++D++
Sbjct: 205 TSEERDILQSVLDDSFNRFVNIVKDGRDMPESKVRKLAD-GRIYSAQQAKSNGLIDEI 261


>gi|29347289|ref|NP_810792.1| protease IV [Bacteroides thetaiotaomicron VPI-5482]
 gi|29339188|gb|AAO76986.1| protease IV [Bacteroides thetaiotaomicron VPI-5482]
          Length = 592

 Score = 42.5 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 65/178 (36%), Gaps = 31/178 (17%)

Query: 55  MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAA 112
           + T +   L  L+ +   K + L +NSPGG   A   I+  ++ +K   P+       AA
Sbjct: 332 VGTKVIRDLRKLKDDEDVKAVVLRVNSPGGSAFASEQIWHAVKELKTEKPVIVSMGDYAA 391

Query: 113 SMGSLLLS------------AGEKGMRFALPNARILLHQPSGGF----SGQASDIERHAQ 156
           S G  +               G  G+   +PN + L  +    +    + + SD     +
Sbjct: 392 SGGYYISCVADTIVAEPTTLTGSIGIFGMVPNVKELSEKIGLTYDVVKTNKFSDFGNIMR 451

Query: 157 DIVKIKRRLNEIY------------VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
              + ++ L ++              +    + E +EK  +     +   A + G+VD
Sbjct: 452 PFNQDEKTLMQMMITQGYDTFVNRCAEGRHMSKEAIEKIAEGRVW-TGEAAKELGLVD 508


>gi|324113514|gb|EGC07489.1| signal peptide peptidase SppA [Escherichia fergusonii B253]
          Length = 618

 Score = 42.5 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 58/177 (32%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM---QFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I   +   +    P+     G AA
Sbjct: 349 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRSELAAAKAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQA------------ 148
           S G  + +             G  G+   +      L        G +            
Sbjct: 409 SGGYWISTPANYIIANPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLANMSVTQS 468

Query: 149 --SDIERHAQD-IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
             +++++  Q  I    +R   +       T E+V+K        +  +A   G+VD
Sbjct: 469 LPTEVQQMMQLSIENGYKRFITLVADARKSTPEQVDKIAQGHVW-TGEDAKANGLVD 524


>gi|225569105|ref|ZP_03778130.1| hypothetical protein CLOHYLEM_05185 [Clostridium hylemonae DSM
           15053]
 gi|225161904|gb|EEG74523.1| hypothetical protein CLOHYLEM_05185 [Clostridium hylemonae DSM
           15053]
          Length = 325

 Score = 42.5 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 61/170 (35%), Gaps = 33/170 (19%)

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK----PPISTFCMGQAASMGSLLLS 120
           FL +++    I LY++SPGG V     +Y  +   K     PI  +    AAS G  +  
Sbjct: 91  FLMSDSDNTGILLYVDSPGGTVYESEELYQKLNEYKDATGRPIWGYMAHYAASGGYYVSM 150

Query: 121 AGEKGMRFALPNA---RILLHQPSGGFSG-----------------------QASDIERH 154
           A +    +A PN     I +       SG                           I  +
Sbjct: 151 AAD--NIYANPNTVTGSIGVIMAGYDMSGLYEKLGIRYVSITSGKNKDSSKLDEDQIAIY 208

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
              + +   R  +I       + +EV+K  D     +A +A + G++D +
Sbjct: 209 QTQVDESFGRFVDIVADGRDMSSDEVKKLADGRTY-TAKQAKENGLIDNI 257


>gi|218548665|ref|YP_002382456.1| protease 4 [Escherichia fergusonii ATCC 35469]
 gi|218356206|emb|CAQ88823.1| protease IV (signal peptide peptidase) [Escherichia fergusonii ATCC
           35469]
          Length = 711

 Score = 42.5 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 58/177 (32%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM---QFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I   +   +    P+     G AA
Sbjct: 442 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRSELAAAKAAGKPVVVSMGGMAA 501

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQA------------ 148
           S G  + +             G  G+   +      L        G +            
Sbjct: 502 SGGYWISTPANYIIANPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLANMSVTQS 561

Query: 149 --SDIERHAQD-IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
             +++++  Q  I    +R   +       T E+V+K        +  +A   G+VD
Sbjct: 562 LPTEVQQMMQLSIENGYKRFITLVADARKSTPEQVDKIAQGHVW-TGEDAKANGLVD 617


>gi|298385314|ref|ZP_06994873.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. 1_1_14]
 gi|298262458|gb|EFI05323.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. 1_1_14]
          Length = 593

 Score = 42.5 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 65/178 (36%), Gaps = 31/178 (17%)

Query: 55  MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAA 112
           + T +   L  L+ +   K + L +NSPGG   A   I+  ++ +K   P+       AA
Sbjct: 332 VGTKVIRDLRKLKDDEDVKAVVLRVNSPGGSAFASEQIWHAVKELKTEKPVIVSMGDYAA 391

Query: 113 SMGSLLLS------------AGEKGMRFALPNARILLHQPSGGF----SGQASDIERHAQ 156
           S G  +               G  G+   +PN + L  +    +    + + SD     +
Sbjct: 392 SGGYYISCVADTIVAEPTTLTGSIGIFGMVPNVKELSEKIGLTYDVVKTNKFSDFGNIMR 451

Query: 157 DIVKIKRRLNEIY------------VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
              + ++ L ++              +    + E +EK  +     +   A + G+VD
Sbjct: 452 PFNQDEKTLMQMMITQGYDTFVNRCAEGRHMSKEAIEKIAEGRVW-TGEAAKELGLVD 508


>gi|325497076|gb|EGC94935.1| protease 4 [Escherichia fergusonii ECD227]
          Length = 594

 Score = 42.5 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 58/177 (32%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM---QFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I   +   +    P+     G AA
Sbjct: 325 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRSELAAAKAAGKPVVVSMGGMAA 384

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQA------------ 148
           S G  + +             G  G+   +      L        G +            
Sbjct: 385 SGGYWISTPANYIIANPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLANMSVTQS 444

Query: 149 --SDIERHAQD-IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
             +++++  Q  I    +R   +       T E+V+K        +  +A   G+VD
Sbjct: 445 LPTEVQQMMQLSIENGYKRFITLVADARKSTPEQVDKIAQGHVW-TGEDAKANGLVD 500


>gi|114567921|ref|YP_755075.1| periplasmic serine protease [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114338856|gb|ABI69704.1| signal peptide peptidase A. Serine peptidase. MEROPS family S49
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 297

 Score = 42.5 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 61/181 (33%), Gaps = 32/181 (17%)

Query: 54  HMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQ 110
             A  I   +         K + + I+SPGG   A   I    + ++    P+ T     
Sbjct: 61  STAGDIMEAIRKAGKREDIKAVVVRIDSPGGSAGASQEIAMELERLREKGKPVVTSMGDV 120

Query: 111 AASMGSLLLS------------AGEKGMRFALPNARILLHQ----PSGGFSGQASDIERH 154
            AS G  +               G  G+   L N   L  +         SG+  D+   
Sbjct: 121 CASGGYWIACSTDHIVANGASLTGSIGVIMQLSNLEGLYGKLGIRNQTIKSGEHKDMGST 180

Query: 155 AQDIVKIKRRLNEIYVKNCGKTY---------EEVEKT----LDRDHIMSASEACDWGVV 201
           ++++   + ++ +  V +  + +         E++       +    I +  +A + G+V
Sbjct: 181 SRELSAEEEKILQDLVDDSYQQFLEQVQKGRQEKIAADKLLEIADGRIFTGKQALELGLV 240

Query: 202 D 202
           D
Sbjct: 241 D 241


>gi|329121217|ref|ZP_08249844.1| signal peptide peptidase [Dialister micraerophilus DSM 19965]
 gi|327470151|gb|EGF15614.1| signal peptide peptidase [Dialister micraerophilus DSM 19965]
          Length = 322

 Score = 42.5 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 68/189 (35%), Gaps = 35/189 (18%)

Query: 46  FVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPP 102
            + G +    +  I  +L     +   K + L INSPGG   A   I    D ++    P
Sbjct: 68  MLGG-VSGSSSEDIMYELREATRDPNAKAVLLRINSPGGTTGATQEIAEEIDKVRNSGKP 126

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALP-------NARILLHQPSGGF----------- 144
           +        AS G  L S G+    FA P          +     S              
Sbjct: 127 VIVSMGDTCASAGYWLASKGD--YIFASPATITGSIGVYMDYTNVSELMDKLGVKNEKIK 184

Query: 145 SGQASDIE-----RHAQDIVKIKRRLNEIYVKNC-----GKTYEEVE-KTLDRDHIMSAS 193
           SG   DI         ++   +++ +++IY +       G+  EE + + +    I++  
Sbjct: 185 SGTHKDILSMYRPITDEEKTILQKMVDDIYNQFVQTIADGRHLEEAKVREIADGRILTGK 244

Query: 194 EACDWGVVD 202
           +A  +G+VD
Sbjct: 245 QAQAYGLVD 253


>gi|70607917|ref|YP_256787.1| 3-hydroxybutyryl-CoA dehydrogenase [Sulfolobus acidocaldarius DSM
           639]
 gi|68568565|gb|AAY81494.1| 3-hydroxybutyryl-CoA dehydrogenase [Sulfolobus acidocaldarius DSM
           639]
          Length = 657

 Score = 42.5 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 60/187 (32%), Gaps = 46/187 (24%)

Query: 41  KERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           + R V +TG+     A      + +  +     E +   +SP         + + +    
Sbjct: 447 EIRAVVITGEGRAFCAGDDIEMMNYWGSVAGAMEWNEKFSSP---------LINLLLNYP 497

Query: 101 PPISTFCMGQAASMGSLL-----LSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
            P+ +   G A   G  L     +        FA+P   I    P     G         
Sbjct: 498 KPVISAVNGLAFGGGMELNILFDIIVASDDAMFAIPEGLIGALPPLASSMG--------- 548

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR------I 209
             +  I R++   Y    G               MSA +A + G+VD V+         +
Sbjct: 549 --VGFISRKIAR-YAL-TGD-------------WMSAKQAKELGLVDIVVPHDQLEIATV 591

Query: 210 DIEEKSK 216
           +I EK+K
Sbjct: 592 EIVEKAK 598


>gi|313902826|ref|ZP_07836223.1| signal peptide peptidase A [Thermaerobacter subterraneus DSM 13965]
 gi|313466946|gb|EFR62463.1| signal peptide peptidase A [Thermaerobacter subterraneus DSM 13965]
          Length = 318

 Score = 42.5 bits (99), Expect = 0.040,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 61/179 (34%), Gaps = 32/179 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
           A  I +QL     +     + + +N+PGG   A   I      ++    P+        A
Sbjct: 74  ADDIVSQLQQAREDPAVAAVVIRMNTPGGSAAAAQEIGVAVQRLREAGKPVVVSIGDLGA 133

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLH----QPSGGFSGQASDI----- 151
           S G  + +             G  G+   + +   L            SG   DI     
Sbjct: 134 SGGYWIAAMADRIVANPASLTGSIGVIMEVTHYEDLYEKLGIDVETIKSGPFKDIGSATR 193

Query: 152 ERHAQDIVKIKRRLNEIY-------VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
              A++   ++  +N+IY        +  G + E V +  D   + +  +A   G+VD+
Sbjct: 194 PLTAEERRLLQGLVNDIYQQFVDVVARGRGMSRERVLELAD-GRVFTGRQAKAEGLVDQ 251


>gi|237713852|ref|ZP_04544333.1| protease IV [Bacteroides sp. D1]
 gi|262409239|ref|ZP_06085783.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. 2_1_22]
 gi|294647614|ref|ZP_06725184.1| signal peptide peptidase SppA, 67K type [Bacteroides ovatus SD CC
           2a]
 gi|294810039|ref|ZP_06768712.1| signal peptide peptidase SppA, 67K type [Bacteroides xylanisolvens
           SD CC 1b]
 gi|298482326|ref|ZP_07000513.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. D22]
 gi|229446008|gb|EEO51799.1| protease IV [Bacteroides sp. D1]
 gi|262352986|gb|EEZ02082.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. 2_1_22]
 gi|292637046|gb|EFF55494.1| signal peptide peptidase SppA, 67K type [Bacteroides ovatus SD CC
           2a]
 gi|294442755|gb|EFG11549.1| signal peptide peptidase SppA, 67K type [Bacteroides xylanisolvens
           SD CC 1b]
 gi|295085355|emb|CBK66878.1| signal peptide peptidase A. Serine peptidase. MEROPS family S49
           [Bacteroides xylanisolvens XB1A]
 gi|298271613|gb|EFI13187.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. D22]
          Length = 592

 Score = 42.5 bits (99), Expect = 0.040,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 70/189 (37%), Gaps = 33/189 (17%)

Query: 55  MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF--IKPPISTFCMGQAA 112
           + + +   L  L+ +N  K + L +NSPGG   A   I+  ++    K P+       AA
Sbjct: 332 VGSKVIRDLRKLKDDNDVKAVVLRVNSPGGSAFASEQIWHAVKELKTKKPVIVSMGDYAA 391

Query: 113 SMGSLLLS------------AGEKGMRFALPNARILLHQPSGGF----SGQASDIERHAQ 156
           S G  +               G  G+   +PN + L  +    +    + + +D     +
Sbjct: 392 SGGYYISCVADTIVAEPTTLTGSIGIFGIIPNVKGLTDKIGLSYDVVKTNKYADFGNIMR 451

Query: 157 DIVKIKRRLNEIY------------VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
              + +R L ++              +    T E +EK  +     +   A   G+VD++
Sbjct: 452 PFNEDERSLLQMMITEGYDTFVSRCAEGRHMTKEAIEKIAEGRVW-TGETAKKLGLVDEL 510

Query: 205 --LMSRIDI 211
             +   +DI
Sbjct: 511 GGIDKALDI 519


>gi|266626161|ref|ZP_06119096.1| translocation-enhancing protein TepA [Clostridium hathewayi DSM
           13479]
 gi|288861931|gb|EFC94229.1| translocation-enhancing protein TepA [Clostridium hathewayi DSM
           13479]
          Length = 138

 Score = 42.5 bits (99), Expect = 0.040,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 49/123 (39%), Gaps = 12/123 (9%)

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS 149
           MAI + +  +  P  +  +G + S+G  L         F +P   +++H      +G   
Sbjct: 1   MAIAEMIASLSIPTVSLVLGGSHSIGVPLAV--STDYSFIVPTGTMMVHPVR--MTGMVI 56

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL------DRD--HIMSASEACDWGVV 201
              +  +    I+ R+      +    Y+++++ +       RD   ++   E    G++
Sbjct: 57  GASQTYEYFEMIQDRILSFVSGHATIAYDQLKRLMLNTEMLTRDLGTVLVGEETVKEGLI 116

Query: 202 DKV 204
           D+V
Sbjct: 117 DEV 119


>gi|220905589|ref|YP_002480901.1| signal peptide peptidase SppA, 36K type [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219869888|gb|ACL50223.1| signal peptide peptidase SppA, 36K type [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 383

 Score = 42.5 bits (99), Expect = 0.041,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 63/161 (39%), Gaps = 31/161 (19%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQF--IKPPISTFCMGQAASMGSLLLSAGEK------ 124
           K + + ++SPGG   A   +YD ++    K P++      AAS G ++  AG++      
Sbjct: 144 KGVLVRVDSPGGGAAASQEVYDALKNLAQKMPVAVSMGSMAASGGLMVSMAGQRVFANPS 203

Query: 125 ------GMRFALPNARILLHQPS----GGFSGQ----ASDIERHAQD--------IVKIK 162
                 G+R  +P  + L+ +          GQ    AS +     +        +  + 
Sbjct: 204 TVTGSIGVRMDVPQLQGLMDKVGVGQETLVVGQYKDAASYMRPMTAEQRAYFQGVLTNMY 263

Query: 163 RRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            +  +I  +  G   +   K L    + +  EA   G+VD+
Sbjct: 264 DQFVDIVAQGRGMPRDRALK-LANGKVYTGQEALGLGLVDE 303


>gi|218694224|ref|YP_002401891.1| Minor capsid protein C from bacteriophage origin [Escherichia coli
           55989]
 gi|218350956|emb|CAU96660.1| Minor capsid protein C from bacteriophage origin [Escherichia coli
           55989]
          Length = 484

 Score = 42.5 bits (99), Expect = 0.041,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 153 NGIIARLQQAASDPIVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 212

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 213 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 272

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   +R   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 273 PDDVRETLQSRMDATRRMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 330

Query: 207 S 207
           S
Sbjct: 331 S 331


>gi|289549221|ref|YP_003474209.1| signal peptide peptidase SppA, 36K type [Thermocrinis albus DSM
           14484]
 gi|289182838|gb|ADC90082.1| signal peptide peptidase SppA, 36K type [Thermocrinis albus DSM
           14484]
          Length = 282

 Score = 42.5 bits (99), Expect = 0.042,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 71/194 (36%), Gaps = 32/194 (16%)

Query: 42  ERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY---DTMQF 98
           +RI  V  +        + +++     +   K + L + SPGG V A   IY   +  + 
Sbjct: 32  DRIAVVKVEGVITDPQAVVSKMEKARLDPSVKALVLRVESPGGSVGASQEIYREVERFRQ 91

Query: 99  IKPPISTFCMGQAASMGSLLLSA------------GEKGMRFALPNARILLHQPSGGF-- 144
              P+       AAS G  + +             G  G+     + + LL +       
Sbjct: 92  SGKPVVVSMGNVAASGGYYISAPANVIYANPGTITGSIGVIIQHTDVQQLLEKLGIKTTA 151

Query: 145 --SGQASDI-----ERHAQDIVKIKRRLNEIYVK--------NCGKTYEEVEKTLDRDHI 189
             +G+  D      E   ++   ++  + + Y +          GK  E++ + +    I
Sbjct: 152 IKTGKFKDTLSPFRELTPEERQYLQNLVEDAYSQFIEAILRYRKGKVQEDILRQIADGRI 211

Query: 190 MSASEACDWGVVDK 203
           ++  +A + G+VD+
Sbjct: 212 LTGKQAKELGLVDE 225


>gi|289192538|ref|YP_003458479.1| signal peptide peptidase SppA, 36K type [Methanocaldococcus sp.
           FS406-22]
 gi|288938988|gb|ADC69743.1| signal peptide peptidase SppA, 36K type [Methanocaldococcus sp.
           FS406-22]
          Length = 314

 Score = 42.5 bits (99), Expect = 0.043,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 70/194 (36%), Gaps = 31/194 (15%)

Query: 50  QIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG--MAIYDTMQFIKPPISTFC 107
                 A      L  LE ++  K + L +NSPGG V A   +A        K P+  + 
Sbjct: 63  PETKKDARYYINLLDKLEKDDSVKGVLLIVNSPGGEVIASEKLARKVEELAKKKPVVVYV 122

Query: 108 MGQAASMGSLLLSA------------GEKGMRFALPNARILLH----QPSGGFSGQASDI 151
            G  AS   ++ +             G  G+R  L +   L+       +   +G+  DI
Sbjct: 123 EGLDASGAYMVSAPADYIVAEKHSIVGSIGVRMDLIHYYGLMKKLGINVTTIKAGKYKDI 182

Query: 152 -----ERHAQDIVKIKRRLNEIY-------VKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
                    ++   +++ +NE Y        ++   +     K  D   I +  +A   G
Sbjct: 183 GSPFRPMTKEEKEYLQKMINETYMDFVKWVAEHRHLSINYTLKIAD-GKIYTGEDAKKVG 241

Query: 200 VVDKVLMSRIDIEE 213
           +VD+V      +++
Sbjct: 242 LVDEVGTEETALKK 255


>gi|15839274|ref|NP_299962.1| protease IV [Xylella fastidiosa 9a5c]
 gi|9107924|gb|AAF85482.1|AE004074_6 protease IV [Xylella fastidiosa 9a5c]
          Length = 633

 Score = 42.5 bits (99), Expect = 0.043,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 69/179 (38%), Gaps = 32/179 (17%)

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYD---TMQFIKPPISTFCMGQAASMGSLLLS----- 120
           E+  K + L +NSPGG V A   I      ++ +  P+       AAS G  +       
Sbjct: 370 EDAVKAVVLRVNSPGGEVFASEQIRREVVALRKVGKPVVVSMGDMAASGGYWISMDADRI 429

Query: 121 -------AGEKGMRFALPNARILLHQPSGGFSG-------QASDIERHAQ--DIVKIKRR 164
                  +G  G+   +PN    L +      G        A DI R         ++  
Sbjct: 430 YADPSTISGSIGIFGLMPNITRTLDKMGVHTDGVGTTRFAGALDITRTLDPQVGQMLQNV 489

Query: 165 LNEIYVKNCGK-------TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           +++ Y     K       + +E++  + R  + S ++A + G+VD++   R  I + +K
Sbjct: 490 IDKGYADFTSKVAQARHRSVQEIDS-IARGRVWSGAQAKERGLVDELGGVREAITDAAK 547


>gi|307154935|ref|YP_003890319.1| hypothetical protein Cyan7822_5161 [Cyanothece sp. PCC 7822]
 gi|306985163|gb|ADN17044.1| protein of unknown function DUF114 [Cyanothece sp. PCC 7822]
          Length = 336

 Score = 42.2 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 43/117 (36%), Gaps = 2/117 (1%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
           S +  +   P+  E+T        +  +L    +V+ T  +       + A    L+   
Sbjct: 6   SSNKKVNQPPVFFEETQN--LISHLQEKLNSTVLVYWTSPVGSICQNDVEALQDILQKIG 63

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
            QKEI L++ S GG   A + I   ++     +        AS  +++    ++   
Sbjct: 64  FQKEIYLFLKSNGGSGLASLRIVHLLRHYTECLKILIPLGCASAATMIALGADEIYM 120


>gi|29839895|ref|NP_829001.1| protease IV, putative [Chlamydophila caviae GPIC]
 gi|29834242|gb|AAP04879.1| protease IV, putative [Chlamydophila caviae GPIC]
          Length = 332

 Score = 42.2 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 71/179 (39%), Gaps = 31/179 (17%)

Query: 53  DHMATLICAQLLFLEAENPQ---KEISLYINSPGGVVTAGMAIYDTMQFIK----PPIST 105
            H   +I   ++ L++   +   K + + ++ PGG V     +Y T++F K     P+  
Sbjct: 76  RHTEKVIQEAIIALDSAPYKGRVKGLIIDMDCPGGEVFEIARVYSTIKFWKQCTKCPVYV 135

Query: 106 FCMGQAASMGSLLLSAGEKGM--RFALPNARILLHQPSGGF------SGQASDIERHAQD 157
           F  G  AS G  +  A +K      +L  +  +L  P           G  SD+    +D
Sbjct: 136 FVNGLCASGGYYVACAADKIYSTSSSLIGSVGVLSGPYFNVKEGLSRHGVQSDLLISGKD 195

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG-VVDKVLMSRIDIEEKS 215
               K  +N  Y +   K  E  ++ +D    +       +G  VD V+ +R  + ++ 
Sbjct: 196 ----KAPMNP-YTEWTAKDREIRQEIID---YL-------YGQFVDIVVTNRPLLTKEK 239


>gi|325924321|ref|ZP_08185865.1| signal peptide peptidase SppA, 67K type [Xanthomonas gardneri ATCC
           19865]
 gi|325545186|gb|EGD16496.1| signal peptide peptidase SppA, 67K type [Xanthomonas gardneri ATCC
           19865]
          Length = 632

 Score = 42.2 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 59/161 (36%), Gaps = 32/161 (19%)

Query: 73  KEISLYINSPGGVVTAGMAIYD---TMQFIKPPISTFCMGQAASMGSLLLSA-------- 121
           K + L ++SPGG V A   I      ++    P+       AAS G  +           
Sbjct: 373 KAVVLRVDSPGGEVFASEQIRREVVALKQAGKPVVVSMGDLAASGGYWISMNADRIYADP 432

Query: 122 ----GEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK---------IKRRLNEI 168
               G  G+   +PN    L +      G  +     A DI +         I+  +N+ 
Sbjct: 433 STISGSIGIFGMVPNLTRALDKIGVHTDGVGTTRFAGAFDITRPLDPAAGQVIQAVINKG 492

Query: 169 YVKNCG-------KTYEEVEKTLDRDHIMSASEACDWGVVD 202
           Y    G       ++ + ++K + R  + S ++A   G+VD
Sbjct: 493 YADFTGKVAQARHQSVDAIDK-VARGRVWSGAQAKQHGLVD 532


>gi|302345567|ref|YP_003813920.1| signal peptide peptidase SppA, 67K type [Prevotella melaninogenica
           ATCC 25845]
 gi|302149332|gb|ADK95594.1| signal peptide peptidase SppA, 67K type [Prevotella melaninogenica
           ATCC 25845]
          Length = 592

 Score = 42.2 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 70/191 (36%), Gaps = 38/191 (19%)

Query: 47  VTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP--PIS 104
           +  Q     A ++C  L  L  +   K + + +NS GG   A   I+  +  +K   P+ 
Sbjct: 323 LFSQGHQIDAQVVCKDLEELAKDKDVKAVVVRVNSGGGSAYASEQIWHQIMELKKLKPVV 382

Query: 105 TFCMGQAASMGSLLLSA------------GEKGMRFALPNARILLHQPSG-----GFSGQ 147
               G AAS G  + +             G  G+    P+   LL +  G       + +
Sbjct: 383 VSMGGMAASGGYYMSAPANWIVAEPTTITGSIGIFGMFPDVSGLLREKLGLKFDEVKTNK 442

Query: 148 ASDIERHA-----QDIVKIKRRLNEIYV----------KNCGKTYEEVEKTLDRDHIMSA 192
            +D    A     +++  + + +N  Y           K   K  E+V +     H+ + 
Sbjct: 443 YADFGTRARPFTEEEMSYLSQYVNRGYKLFRHRVAEGRKMTEKQVEKVAQ----GHVFTG 498

Query: 193 SEACDWGVVDK 203
            +A   G+VD+
Sbjct: 499 QDAQKIGLVDQ 509


>gi|242398666|ref|YP_002994090.1| NfeD nodulation like protein, probable membrane protein
           [Thermococcus sibiricus MM 739]
 gi|242265059|gb|ACS89741.1| NfeD nodulation like protein, probable membrane protein
           [Thermococcus sibiricus MM 739]
          Length = 451

 Score = 42.2 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 8/145 (5%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM---GQAASMGSLLLSAGEKGMRFALP 131
           I + +++PGG   A   I + ++  + P+ T+     G AAS G+ +       +    P
Sbjct: 59  IIILLDTPGGRADAMQNIIERIKSAEVPVITYVYPPGGMAASAGTYIALGSH--LIAMAP 116

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
              I   +P  G+S   S I      +V       +   K  G+    VEK +  D  + 
Sbjct: 117 GTSIGACRPILGYSQNGS-IIEAPPKVVNFYASYIKSLAKASGRNETMVEKFITEDLAID 175

Query: 192 ASEACDWGVVDKVLMSRI-DIEEKS 215
             EA + GV+ +V+ + + D+ EK+
Sbjct: 176 PEEALNSGVI-EVIANDVNDLLEKA 199


>gi|163791443|ref|ZP_02185852.1| hypothetical protein CAT7_03184 [Carnobacterium sp. AT7]
 gi|159873307|gb|EDP67402.1| hypothetical protein CAT7_03184 [Carnobacterium sp. AT7]
          Length = 345

 Score = 42.2 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 65/188 (34%), Gaps = 33/188 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM----QFIKPPISTFCMGQAA 112
                QL  +  ++  K I L +NSPGG       I D +    +  K PI       AA
Sbjct: 92  NGFLQQLEQILVDDTIKGIILSVNSPGGGTYESAQIKDKLVEIQEKTKKPIYVSMGSMAA 151

Query: 113 SMGSLLLSAGEK------------GMRFALPNARILLHQP----SGGFSGQASDIERHAQ 156
           S G  + +  EK            G+  +  N   L  +     +   SG+  DI    +
Sbjct: 152 SGGYYISAPAEKIFAAEETLTGSIGVIMSGTNLTELFEKIGIDDTTIKSGKFKDIGSTTR 211

Query: 157 DIVKIKRRLNEIYVKNC------------GKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           ++ +    + +  V               G   + V    D   I   ++A + G+VD++
Sbjct: 212 EMTEEDAAILQTMVNTSFDRFVDVIVKGRGMDEDVVRTIAD-GRIYDGAQAVELGLVDEI 270

Query: 205 LMSRIDIE 212
                 +E
Sbjct: 271 GYQEDALE 278


>gi|188574921|ref|YP_001911850.1| signal peptide peptidase SppA, 67K type [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188519373|gb|ACD57318.1| signal peptide peptidase SppA, 67K type [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 629

 Score = 42.2 bits (98), Expect = 0.047,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 60/161 (37%), Gaps = 32/161 (19%)

Query: 73  KEISLYINSPGGVVTAGMAIYD---TMQFIKPPISTFCMGQAASMGSLLLSA-------- 121
           K + L ++SPGG V A   I      ++    P+       AAS G  +           
Sbjct: 370 KAVVLRVDSPGGEVFASEQIRREVVALKQAGKPVVVSMGDLAASGGYWISMNADRIYADP 429

Query: 122 ----GEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK---------IKRRLNEI 168
               G  G+   +PN    L +      G  +     A DI +         I+  +N+ 
Sbjct: 430 STISGSIGIFGMVPNLTRALDKIGVHTDGVGTTRFAGAFDITRPLDPAAGQVIQALINKG 489

Query: 169 YVKNCG-------KTYEEVEKTLDRDHIMSASEACDWGVVD 202
           Y    G       ++ + ++K + R  + S ++A + G+VD
Sbjct: 490 YADFTGKVAQARHQSVDAIDK-VARGRVWSGAQAKERGLVD 529


>gi|166713751|ref|ZP_02244958.1| protease IV [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 633

 Score = 42.2 bits (98), Expect = 0.047,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 60/161 (37%), Gaps = 32/161 (19%)

Query: 73  KEISLYINSPGGVVTAGMAIYD---TMQFIKPPISTFCMGQAASMGSLLLSA-------- 121
           K + L ++SPGG V A   I      ++    P+       AAS G  +           
Sbjct: 374 KAVVLRVDSPGGEVFASEQIRREVVALKQAGKPVVVSMGDLAASGGYWISMNADRIYADP 433

Query: 122 ----GEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK---------IKRRLNEI 168
               G  G+   +PN    L +      G  +     A DI +         I+  +N+ 
Sbjct: 434 STISGSIGIFGMVPNLTRALDKIGVHTDGVGTTRFAGAFDITRPLDPAAGQVIQALINKG 493

Query: 169 YVKNCG-------KTYEEVEKTLDRDHIMSASEACDWGVVD 202
           Y    G       ++ + ++K + R  + S ++A + G+VD
Sbjct: 494 YADFTGKVAQARHQSVDAIDK-VARGRVWSGAQAKERGLVD 533


>gi|159476306|ref|XP_001696252.1| signal peptide peptidase [Chlamydomonas reinhardtii]
 gi|158282477|gb|EDP08229.1| signal peptide peptidase [Chlamydomonas reinhardtii]
          Length = 744

 Score = 42.2 bits (98), Expect = 0.048,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 69/182 (37%), Gaps = 38/182 (20%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP---PISTFCMGQAA 112
           AT + AQL  L  +   + + + +NSPGG   A  +IY  +Q ++    P+       AA
Sbjct: 435 ATKLSAQLNQLLEDPDVRAVVVRVNSPGGSALASDSIYHELQRLRAAGKPVVVSMGDVAA 494

Query: 113 SMGSLLL--------SAGEKGMRFALPNARI-----------------------LLHQPS 141
           S G  +           G       +   +I                       +L   +
Sbjct: 495 SGGYYIAAAADAVVAQPGTVTGSIGVVAGKINVGRTLEDVGVRSEGVTVGRNADMLSPFT 554

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
           G    QA+ +E     +      L+++  K+ G+   EV + L +  + +  +A D G+V
Sbjct: 555 GLAPEQAAQVEALVDHVY--DDFLDKV-AKSRGRPVSEVRQ-LAKGRVYTGQQAYDIGLV 610

Query: 202 DK 203
           D+
Sbjct: 611 DQ 612


>gi|331646437|ref|ZP_08347540.1| minor capsid protein C (GPC) [Escherichia coli M605]
 gi|331045189|gb|EGI17316.1| minor capsid protein C (GPC) [Escherichia coli M605]
          Length = 484

 Score = 42.2 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 153 NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 212

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 213 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 272

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   +R   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 273 PDDVRETLQSRMDATRRMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 330

Query: 207 S 207
           S
Sbjct: 331 S 331


>gi|289667892|ref|ZP_06488967.1| protease IV [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 583

 Score = 42.2 bits (98), Expect = 0.051,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 60/161 (37%), Gaps = 32/161 (19%)

Query: 73  KEISLYINSPGGVVTAGMAIYD---TMQFIKPPISTFCMGQAASMGSLLLSA-------- 121
           K + L ++SPGG V A   I      ++    P+       AAS G  +           
Sbjct: 324 KAVVLRVDSPGGEVFASEQIRREVVALKQAGKPVVVSMGDLAASGGYWISMNADRIYADP 383

Query: 122 ----GEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK---------IKRRLNEI 168
               G  G+   +PN    L +      G  +     A DI +         I+  +N+ 
Sbjct: 384 STISGSIGIFGMVPNLTRALDKIGVHTDGVGTTRFAGAFDITRPLDPAAGQVIQAVINKG 443

Query: 169 YVKNCG-------KTYEEVEKTLDRDHIMSASEACDWGVVD 202
           Y    G       ++ + ++K + R  + S ++A + G+VD
Sbjct: 444 YADFTGKVAQARHQSVDAIDK-VARGRVWSGAQAKERGLVD 483


>gi|289664822|ref|ZP_06486403.1| protease IV [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 633

 Score = 42.2 bits (98), Expect = 0.051,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 60/161 (37%), Gaps = 32/161 (19%)

Query: 73  KEISLYINSPGGVVTAGMAIYD---TMQFIKPPISTFCMGQAASMGSLLLSA-------- 121
           K + L ++SPGG V A   I      ++    P+       AAS G  +           
Sbjct: 374 KAVVLRVDSPGGEVFASEQIRREVVALKQAGKPVVVSMGDLAASGGYWISMNADRIYADP 433

Query: 122 ----GEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK---------IKRRLNEI 168
               G  G+   +PN    L +      G  +     A DI +         I+  +N+ 
Sbjct: 434 STISGSIGIFGMVPNLTRALDKIGVHTDGVGTTRFAGAFDITRPLDPAAGQVIQAVINKG 493

Query: 169 YVKNCG-------KTYEEVEKTLDRDHIMSASEACDWGVVD 202
           Y    G       ++ + ++K + R  + S ++A + G+VD
Sbjct: 494 YADFTGKVAQARHQSVDAIDK-VARGRVWSGAQAKERGLVD 533


>gi|58580196|ref|YP_199212.1| protease IV [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58424790|gb|AAW73827.1| protease IV [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 642

 Score = 42.2 bits (98), Expect = 0.051,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 60/161 (37%), Gaps = 32/161 (19%)

Query: 73  KEISLYINSPGGVVTAGMAIYD---TMQFIKPPISTFCMGQAASMGSLLLSA-------- 121
           K + L ++SPGG V A   I      ++    P+       AAS G  +           
Sbjct: 383 KAVVLRVDSPGGEVFASEQIRREVVALKQAGKPVVVSMGDLAASGGYWISMNADRIYADP 442

Query: 122 ----GEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK---------IKRRLNEI 168
               G  G+   +PN    L +      G  +     A DI +         I+  +N+ 
Sbjct: 443 STISGSIGIFGMVPNLTRALDKIGVHTDGVGTTRFAGAFDITRPLDPAAGQVIQAVINKG 502

Query: 169 YVKNCG-------KTYEEVEKTLDRDHIMSASEACDWGVVD 202
           Y    G       ++ + ++K + R  + S ++A + G+VD
Sbjct: 503 YADFTGKVAQARHQSVDAIDK-VARGRVWSGAQAKERGLVD 542


>gi|84622191|ref|YP_449563.1| protease IV [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|84366131|dbj|BAE67289.1| protease IV [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 633

 Score = 42.2 bits (98), Expect = 0.051,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 60/161 (37%), Gaps = 32/161 (19%)

Query: 73  KEISLYINSPGGVVTAGMAIYD---TMQFIKPPISTFCMGQAASMGSLLLSA-------- 121
           K + L ++SPGG V A   I      ++    P+       AAS G  +           
Sbjct: 374 KAVVLRVDSPGGEVFASEQIRREVVALKQAGKPVVVSMGDLAASGGYWISMNADRIYADP 433

Query: 122 ----GEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK---------IKRRLNEI 168
               G  G+   +PN    L +      G  +     A DI +         I+  +N+ 
Sbjct: 434 STISGSIGIFGMVPNLTRALDKIGVHTDGVGTTRFAGAFDITRPLDPAAGQVIQAVINKG 493

Query: 169 YVKNCG-------KTYEEVEKTLDRDHIMSASEACDWGVVD 202
           Y    G       ++ + ++K + R  + S ++A + G+VD
Sbjct: 494 YADFTGKVAQARHQSVDAIDK-VARGRVWSGAQAKERGLVD 533


>gi|15668832|ref|NP_247635.1| protease IV SppA [Methanocaldococcus jannaschii DSM 2661]
 gi|3915936|sp|Q58067|Y651_METJA RecName: Full=Putative protease MJ0651
 gi|2826302|gb|AAB98642.1| protease IV (sppA) [Methanocaldococcus jannaschii DSM 2661]
          Length = 311

 Score = 42.2 bits (98), Expect = 0.051,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 71/194 (36%), Gaps = 31/194 (15%)

Query: 50  QIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG--MAIYDTMQFIKPPISTFC 107
             +   A      L  LE ++  K + L +NSPGG V A   +A        K P+  + 
Sbjct: 63  PQQKKDARYYINLLDDLEKDDSVKGVLLVVNSPGGEVIASEKLARKVEELAKKKPVVVYV 122

Query: 108 MGQAASMGSLLLSA------------GEKGMRFALPNARILLH----QPSGGFSGQASDI 151
            G  AS   ++ +             G  G+R  L +   L+       +   +G+  DI
Sbjct: 123 EGLDASGAYMVSAPADYIVAEKHSIVGSIGVRMDLMHYYGLMKKLGINVTTIKAGKYKDI 182

Query: 152 -----ERHAQDIVKIKRRLNEIY-------VKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
                    ++   +++ +NE Y        ++   +     K  D   I S  +A   G
Sbjct: 183 GSPFRPMTKEEKEYLQKMINETYMDFVKWVAEHRHLSINYTLKIAD-GKIYSGEDAKKVG 241

Query: 200 VVDKVLMSRIDIEE 213
           +VD+V      +++
Sbjct: 242 LVDEVGTEEDALKK 255


>gi|9626248|ref|NP_040584.1| capsid component [Enterobacteria phage lambda]
 gi|238903122|ref|YP_002928918.1| Minor capsid protein C (GPC) [Escherichia coli BW2952]
 gi|253774242|ref|YP_003037073.1| peptidase S49 [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|137565|sp|P03711|VCAC_LAMBD RecName: Full=Minor capsid protein C; AltName: Full=Putative
           peptidase GPC; Short=GPC; Contains: RecName: Full=Capsid
           assembly protein NU3
 gi|215109|gb|AAA96537.1| C (capsid component;439) [Enterobacteria phage lambda]
 gi|194021578|gb|ACF32387.1| capsid component [Enterobacteria phage DE3]
 gi|238861774|gb|ACR63772.1| Minor capsid protein C (GPC) [Escherichia coli BW2952]
 gi|242376543|emb|CAQ31251.1| enterobacteria phage lambda, capsid component [Escherichia coli
           BL21(DE3)]
 gi|253325286|gb|ACT29888.1| peptidase S49 [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253976951|gb|ACT42621.1| capsid component [Escherichia coli BL21(DE3)]
          Length = 439

 Score = 42.2 bits (98), Expect = 0.053,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 108 NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 167

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 168 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 227

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   ++   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 228 PDDVRETLQSRMDATRQMFAQKVSAYTGLSVQVVL-DTEAAVY-SGQEAIDAGLADELVN 285

Query: 207 S 207
           S
Sbjct: 286 S 286


>gi|331672678|ref|ZP_08373467.1| minor capsid protein C (GPC) [Escherichia coli TA280]
 gi|331070321|gb|EGI41687.1| minor capsid protein C (GPC) [Escherichia coli TA280]
          Length = 484

 Score = 42.2 bits (98), Expect = 0.053,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 153 NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 212

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 213 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 272

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   +R   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 273 PDDVRETLQSRMDATRRMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 330

Query: 207 S 207
           S
Sbjct: 331 S 331


>gi|94969556|ref|YP_591604.1| nodulation efficiency protein NfeD [Candidatus Koribacter
           versatilis Ellin345]
 gi|94551606|gb|ABF41530.1| Nodulation efficiency protein NfeD [Candidatus Koribacter
           versatilis Ellin345]
          Length = 438

 Score = 42.2 bits (98), Expect = 0.053,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 59/167 (35%), Gaps = 17/167 (10%)

Query: 55  MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM---GQA 111
           ++    ++ +   AE+  + + + +++PGG+VT+  AI   +   K P+  +       A
Sbjct: 33  VSEEYISRGIDYAAEHNAQAVLIELHTPGGLVTSTRAIISKILGSKVPVIIYVYPTGANA 92

Query: 112 ASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVK 171
           AS G  +L + +       P        P     G A       ++   +K ++      
Sbjct: 93  ASAGFFILESADIA--AMAPGTNTGSAHPVSLAFGVA-----QTKEDDTMKAKIENDLAA 145

Query: 172 NC-------GKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
                    G+     E  +      S  EA    ++D +     D+
Sbjct: 146 FLRSYVSKRGRNVALAETGVRESKAFSDQEALSQNLIDVIAKDEQDL 192


>gi|297529049|ref|YP_003670324.1| signal peptide peptidase SppA, 36K type [Geobacillus sp. C56-T3]
 gi|297252301|gb|ADI25747.1| signal peptide peptidase SppA, 36K type [Geobacillus sp. C56-T3]
          Length = 335

 Score = 42.2 bits (98), Expect = 0.053,   Method: Composition-based stats.
 Identities = 45/177 (25%), Positives = 67/177 (37%), Gaps = 38/177 (21%)

Query: 62  QLLFLEAENPQ-KEISLYINSPGGVVTAGMAIYDTMQFIK----PPISTFCMGQAASMGS 116
           Q++    E+   K I L INSPGG V     IYD +  +K     PI       AAS G 
Sbjct: 93  QMIKQAKEDQDVKAIILRINSPGGGVAESAEIYDQLMKLKKKTNKPIYVSMGAMAASGGY 152

Query: 117 LLLSAGEKGMRFALP---NARILLHQPSGGFSGQA---------------SDIERHAQDI 158
            + +AG+K   FA P      I +   S  + G A                DI   A+ +
Sbjct: 153 YIAAAGDKI--FASPETITGSIGVIMQSVNYEGLAKKYGVELVTIKSGPYKDIMNPARKM 210

Query: 159 VK-----IKRRLNEIY-------VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            +     +++ +N+ Y        K      + V K  D   I    +A    +VD+
Sbjct: 211 TEAEREILQQLINDSYDAFVDVVAKGRKLPEDTVRKLAD-GRIYDGRQAKALLLVDE 266


>gi|331676489|ref|ZP_08377186.1| minor capsid protein C (GPC) [Escherichia coli H591]
 gi|331075982|gb|EGI47279.1| minor capsid protein C (GPC) [Escherichia coli H591]
          Length = 484

 Score = 42.2 bits (98), Expect = 0.054,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 153 NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 212

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 213 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 272

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   +R   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 273 PDDVRETLQSRMDATRRMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 330

Query: 207 S 207
           S
Sbjct: 331 S 331


>gi|218703860|ref|YP_002411379.1| Minor capsid protein C from bacteriophage origin [Escherichia coli
           UMN026]
 gi|218430957|emb|CAR11831.1| Minor capsid protein C from bacteriophage origin [Escherichia coli
           UMN026]
          Length = 481

 Score = 42.2 bits (98), Expect = 0.054,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 146 NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 205

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 206 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 265

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   +R   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 266 PDDVRETLQSRMDATRRMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 323

Query: 207 S 207
           S
Sbjct: 324 S 324


>gi|309797023|ref|ZP_07691422.1| putative signal peptide peptidase SppA [Escherichia coli MS 145-7]
 gi|308119306|gb|EFO56568.1| putative signal peptide peptidase SppA [Escherichia coli MS 145-7]
          Length = 426

 Score = 42.2 bits (98), Expect = 0.056,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 95  NGIIARLQQAASDPIVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 154

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 155 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 214

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   +R   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 215 PDDVRETLQSRMDATRRMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 272

Query: 207 S 207
           S
Sbjct: 273 S 273


>gi|295695466|ref|YP_003588704.1| protein of unknown function DUF114 [Bacillus tusciae DSM 2912]
 gi|295411068|gb|ADG05560.1| protein of unknown function DUF114 [Bacillus tusciae DSM 2912]
          Length = 276

 Score = 42.2 bits (98), Expect = 0.056,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 67/166 (40%), Gaps = 20/166 (12%)

Query: 25  QTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF-LEAENPQKEISLYINSPG 83
           +T +G R   + +R  +E + F+   + +++      Q+L  +        I L +++PG
Sbjct: 35  ETRQGTRMITLINR--QETLSFLGVPLRNYINIEDSEQVLRAIRLTPDDMPIDLVLHTPG 92

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR----FALPNARILLHQ 139
           G+V A   I   ++     ++ +    A S G+L+  A ++ +        P    L   
Sbjct: 93  GLVLAAEQIAAALKAHPADVTVYVPHYAMSGGTLIALAADRIVMDENAVLGPVDPQLGQW 152

Query: 140 PSGGF-----SGQASDIE----RHAQD----IVKIKRRLNEIYVKN 172
           P+        + +A DI+      A      I +++  +  +  ++
Sbjct: 153 PAASILRLTRTKEAKDIDDETWIMADMAEKAIHQVREFVANLLREH 198


>gi|317121883|ref|YP_004101886.1| periplasmic serine protease [Thermaerobacter marianensis DSM 12885]
 gi|315591863|gb|ADU51159.1| periplasmic serine protease [Thermaerobacter marianensis DSM 12885]
          Length = 280

 Score = 41.8 bits (97), Expect = 0.058,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 5/110 (4%)

Query: 21  MVVEQ--TNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF-LEAENPQKEISL 77
            V+ Q    RG R   +  R  +E + F+   +  ++      Q+L  +    P   I L
Sbjct: 37  QVIRQLERERGSRVITLIHR--QESLSFLGIPLTRYITVDDSEQVLRAIRYTPPNMPIDL 94

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
            +++PGG+V A   I + ++  + P++      A S G+L+  A ++   
Sbjct: 95  IVHTPGGLVLAAEQIAEAIRRHRGPVTVMVPHYAMSGGTLIALAADQIWM 144


>gi|15802177|ref|NP_288199.1| protease 4 [Escherichia coli O157:H7 EDL933]
 gi|12515791|gb|AAG56752.1|AE005399_6 protease IV, a signal peptide peptidase [Escherichia coli O157:H7
           str. EDL933]
          Length = 618

 Score = 41.8 bits (97), Expect = 0.058,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 349 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 409 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVZNSLDSIGVHTDGVSTSPLADVSITRA 468

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 469 LPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 524


>gi|218554104|ref|YP_002387017.1| Minor capsid protein C from bacteriophage origin [Escherichia coli
           IAI1]
 gi|218360872|emb|CAQ98442.2| Minor capsid protein C from bacteriophage origin [Escherichia coli
           IAI1]
          Length = 484

 Score = 41.8 bits (97), Expect = 0.058,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 153 NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 212

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 213 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 272

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   +R   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 273 PDDVRETLQSRMDATRRMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 330

Query: 207 S 207
           S
Sbjct: 331 S 331


>gi|46581551|ref|YP_012359.1| signal peptide peptidase SppA, 36K type [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|46450973|gb|AAS97619.1| signal peptide peptidase SppA, 36K type [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|311235195|gb|ADP88049.1| signal peptide peptidase SppA, 36K type [Desulfovibrio vulgaris
           RCH1]
          Length = 296

 Score = 41.8 bits (97), Expect = 0.058,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 68/171 (39%), Gaps = 31/171 (18%)

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP--ISTFCMGQAASMGSLLLS 120
           +  L  +   + + + ++SPGG V     ++D ++ +     +       AAS G ++ +
Sbjct: 69  MRKLAEDRTVRGVLVRVDSPGGAVAPSQELHDAVKRLAADKPVVVSMGSLAASGGLMVST 128

Query: 121 ------------AGEKGMRFALPNARILLHQP----SGGFSGQ----------ASDIERH 154
                        G  G++  +PN + L+ +         SG            S+ ER 
Sbjct: 129 GATRIVANPATITGSIGVKMEMPNVQGLMDKIGVARQTLVSGDLKDAGSPFRAMSEAERA 188

Query: 155 AQD--IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
                I+++  +   +  ++     E+V    D   I++ S+A + G+VDK
Sbjct: 189 YFQSIIMEMYGQFVSMIAEDRNIPVEKVRSFAD-GRILTGSQALELGLVDK 238


>gi|221633251|ref|YP_002522476.1| protease IV, signal peptide peptidase [Thermomicrobium roseum DSM
           5159]
 gi|221155784|gb|ACM04911.1| protease IV, signal peptide peptidase [Thermomicrobium roseum DSM
           5159]
          Length = 321

 Score = 41.8 bits (97), Expect = 0.059,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 74/215 (34%), Gaps = 41/215 (19%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI 79
           P V E   RG  +       L+     +TG+     A  I  QL         + + L +
Sbjct: 46  PHVAEIRVRGPIA-------LRGGAGLLTGE--SASAERIVEQLERARQNPNARVVLLRV 96

Query: 80  NSPGGVVTAGMAIYDTM---QFIKPPISTFCMGQAASMGSLLLSA------------GEK 124
           +SPGG V A   I+  +   Q    P+  F    AAS G  + +             G  
Sbjct: 97  DSPGGGVNAAREIWAAVRRVQESGKPVVAFFEDTAASGGYYISAPADRIVAMPDTITGSI 156

Query: 125 GMRFALPNARILLHQPSGGFS----GQASDIERHAQDIVKIKRRLNEIYVKNC------- 173
           G+   +P+   L  +          G   D+    + +   +R L E  V          
Sbjct: 157 GVILIIPDLSGLYEKLGIRMQVVKSGTFKDMASSDRPLTPEERALLEQLVHEAYDEFVRV 216

Query: 174 ---GK--TYEEVEKTLDRDHIMSASEACDWGVVDK 203
              G+    E V +  D   I +  +A + G+VD+
Sbjct: 217 VAEGRAMPPERVRELAD-GRIYTGRQAKELGLVDE 250


>gi|293403702|ref|ZP_06647790.1| head protein [Escherichia coli FVEC1412]
 gi|298383397|ref|ZP_06992983.1| minor capsid protein C bacteriophage origin [Escherichia coli
           FVEC1302]
 gi|291429117|gb|EFF02140.1| head protein [Escherichia coli FVEC1412]
 gi|298276193|gb|EFI17720.1| minor capsid protein C bacteriophage origin [Escherichia coli
           FVEC1302]
          Length = 472

 Score = 41.8 bits (97), Expect = 0.060,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 141 NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 200

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 201 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 260

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   +R   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 261 PDDVRETLQSRMDATRRMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 318

Query: 207 S 207
           S
Sbjct: 319 S 319


>gi|260890123|ref|ZP_05901386.1| hypothetical protein GCWU000323_01285 [Leptotrichia hofstadii
           F0254]
 gi|260860146|gb|EEX74646.1| signal peptide peptidase SppA, 36K type [Leptotrichia hofstadii
           F0254]
          Length = 262

 Score = 41.8 bits (97), Expect = 0.060,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 64/176 (36%), Gaps = 29/176 (16%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +C +L  L+     K + L INSPGG       IY  ++ +  PI        AS G 
Sbjct: 19  ENVCEKLEELKEIKNLKGLVLRINSPGGSALVSEKIYKKLKKLTVPIYVSMGDVCASGGY 78

Query: 117 LLLSAGEK------------GMRFALPNARILLH----QPSGGFSGQASDIERHAQDI-- 158
            + + G+K            G+    P     +        G   G   D+    + +  
Sbjct: 79  YIATTGKKLFANNFTLTGSIGVVMMYPEVTGTMKKLDINLEGFGKGAGFDMLNPFEKLGE 138

Query: 159 ---VKIKRRLNEIYVKNC-------GKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
               K+   +NE+Y +         G   EE+EK       +  SEA +  +VD++
Sbjct: 139 DSKEKLIHNMNEVYGEFKEHVMVARGMNDEELEKIAQGRVWL-GSEAKNINLVDEI 193


>gi|322832766|ref|YP_004212793.1| signal peptide peptidase SppA, 67K type [Rahnella sp. Y9602]
 gi|321167967|gb|ADW73666.1| signal peptide peptidase SppA, 67K type [Rahnella sp. Y9602]
          Length = 617

 Score = 41.8 bits (97), Expect = 0.061,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 63/180 (35%), Gaps = 35/180 (19%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM---QFIKPPISTFCMGQAA 112
                 Q+     +   K I L +NSPGG V+A   I   +   +    P+     G AA
Sbjct: 348 GDTTAQQIRDARLDPKVKAIVLRVNSPGGSVSASEVIRSELAAAKAAGKPVVVSMGGMAA 407

Query: 113 SMGSLLLSAGEKGMRFALPNA---------RILLHQPSGGFSGQASD------IERHA-- 155
           S G  + +        A P+           I  +Q +  ++G  +D      +   A  
Sbjct: 408 SGGYWISTPA--NYIIASPSTLTGSIGIFGVINTYQNTLDYAGVHTDGVATSPLADIAST 465

Query: 156 -----QDIVKIKRRLNEIYVKNCG-------KTYEEVEKTLDRDHIMSASEACDWGVVDK 203
                +    ++  +   Y    G       KT E++++       +  S+A   G+VD+
Sbjct: 466 KALPPEFSQMMQLNIENGYKTFLGLVADSRHKTPEQIDQIAQGHVWI-GSDAKANGLVDE 524


>gi|195339587|ref|XP_002036399.1| GM17787 [Drosophila sechellia]
 gi|194130279|gb|EDW52322.1| GM17787 [Drosophila sechellia]
          Length = 287

 Score = 41.8 bits (97), Expect = 0.061,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 19/116 (16%)

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            +     P +    G + + G +L +A E   R  LPN  I +H     F          
Sbjct: 121 ALHLCGLPTAAAINGHSPAAGCVLATACE--YRVMLPNLFIGIHATRFSF---------- 168

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
                 I + +   Y          VE+ L++  + +  EA D G+VD++  S+ +
Sbjct: 169 -----VISKWMMNSY--QSVLPRRVVERALNQGKLFTTQEALDVGLVDEIACSKEE 217


>gi|149197052|ref|ZP_01874104.1| protease IV [Lentisphaera araneosa HTCC2155]
 gi|149139598|gb|EDM27999.1| protease IV [Lentisphaera araneosa HTCC2155]
          Length = 587

 Score = 41.8 bits (97), Expect = 0.062,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 74/207 (35%), Gaps = 37/207 (17%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPI 103
           +V + G I+  M   +   ++     +  K + L INSPGG   A   I    +  K   
Sbjct: 291 LVNLDGTIDTRMGEALRRYIMRASQNDKVKAMVLRINSPGGSALASEMICQATEEFKKTG 350

Query: 104 STFCMGQ---AAS-------------------MGSLLLSAGEKGMRFALPNARILLHQPS 141
            TF +     AAS                    GS+ +  G+  M        I  H+  
Sbjct: 351 KTFVVSMSNVAASGGYYSAVFGEPIYAESATITGSIGVLGGKLVMSKMFDKIGISTHEFK 410

Query: 142 GGFSGQASDIERHAQDIV-----KIKRRLNEIYVKNCGKTYE----EVEKTLDRD---HI 189
               G+ SDI             KI   +N +Y    G+  +    +++  L+      +
Sbjct: 411 I---GKYSDINSSTSFFNEDQRAKITESMNRVYDVFKGRIIQGREGKLKGDLEAMAGGRV 467

Query: 190 MSASEACDWGVVDKVLMSRIDIEEKSK 216
            +  +A + G+VDK+   R  I +  +
Sbjct: 468 YTGLQAKELGLVDKIGGLREAINDAKE 494


>gi|301063986|ref|ZP_07204451.1| signal peptide peptidase SppA, 36K type [delta proteobacterium
           NaphS2]
 gi|300441897|gb|EFK06197.1| signal peptide peptidase SppA, 36K type [delta proteobacterium
           NaphS2]
          Length = 294

 Score = 41.8 bits (97), Expect = 0.062,   Method: Composition-based stats.
 Identities = 48/196 (24%), Positives = 72/196 (36%), Gaps = 35/196 (17%)

Query: 39  LLKERI--VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           L KE+I  V + G         I +QL     +   + I L INSPGG V A   IY  +
Sbjct: 32  LFKEKIGVVAING--TISSGKKISSQLAKFARDENIRAIILRINSPGGGVGATQEIYREV 89

Query: 97  QFI--KPPISTFCMGQAASMGSLLLSAGEK------------GMRFALPNARILLHQPSG 142
           Q    + P+       AAS G  + +   K            G+         LL +   
Sbjct: 90  QKTIRQKPVIVSMGSVAASGGYYVAAPATKIVSNPGTITGSIGVFIQFVRLEKLLSKIGV 149

Query: 143 GF----SGQASDIERHAQDIVKIKRRLNEIY----------VKNCGK--TYEEVEKTLDR 186
            F    SG+  D+    + + +  R + E                G+  + +EV+K  D 
Sbjct: 150 DFEIVKSGEFKDMGSPDRKLTRRDREIIEALIEDLQGQFVSAVASGRHLSVQEVQKFAD- 208

Query: 187 DHIMSASEACDWGVVD 202
             I S + A   G+VD
Sbjct: 209 GRIFSGARAKQLGLVD 224


>gi|300924815|ref|ZP_07140755.1| signal peptide peptidase SppA [Escherichia coli MS 182-1]
 gi|301327503|ref|ZP_07220736.1| signal peptide peptidase SppA [Escherichia coli MS 78-1]
 gi|309793539|ref|ZP_07687966.1| signal peptide peptidase SppA [Escherichia coli MS 145-7]
 gi|331653170|ref|ZP_08354175.1| signal peptide peptidase SppA, 67K type [Escherichia coli M718]
 gi|300419022|gb|EFK02333.1| signal peptide peptidase SppA [Escherichia coli MS 182-1]
 gi|300845934|gb|EFK73694.1| signal peptide peptidase SppA [Escherichia coli MS 78-1]
 gi|308123126|gb|EFO60388.1| signal peptide peptidase SppA [Escherichia coli MS 145-7]
 gi|323378358|gb|ADX50626.1| signal peptide peptidase SppA, 67K type [Escherichia coli KO11]
 gi|331049268|gb|EGI21340.1| signal peptide peptidase SppA, 67K type [Escherichia coli M718]
          Length = 666

 Score = 41.8 bits (97), Expect = 0.063,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 397 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 456

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 457 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 516

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 517 LPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 572


>gi|300917670|ref|ZP_07134319.1| signal peptide peptidase SppA [Escherichia coli MS 115-1]
 gi|300415071|gb|EFJ98381.1| signal peptide peptidase SppA [Escherichia coli MS 115-1]
          Length = 666

 Score = 41.8 bits (97), Expect = 0.063,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 397 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 456

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 457 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 516

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 517 LPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 572


>gi|300904625|ref|ZP_07122461.1| signal peptide peptidase SppA [Escherichia coli MS 84-1]
 gi|301303940|ref|ZP_07210058.1| signal peptide peptidase SppA [Escherichia coli MS 124-1]
 gi|300403456|gb|EFJ86994.1| signal peptide peptidase SppA [Escherichia coli MS 84-1]
 gi|300840737|gb|EFK68497.1| signal peptide peptidase SppA [Escherichia coli MS 124-1]
 gi|315257426|gb|EFU37394.1| signal peptide peptidase SppA [Escherichia coli MS 85-1]
          Length = 666

 Score = 41.8 bits (97), Expect = 0.063,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 397 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 456

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 457 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITKA 516

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 517 LPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 572


>gi|293415083|ref|ZP_06657726.1| signal peptide peptidase SppA [Escherichia coli B185]
 gi|291432731|gb|EFF05710.1| signal peptide peptidase SppA [Escherichia coli B185]
          Length = 666

 Score = 41.8 bits (97), Expect = 0.063,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 397 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 456

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 457 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITKA 516

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 517 LPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 572


>gi|293446138|ref|ZP_06662560.1| signal peptide peptidase SppA [Escherichia coli B088]
 gi|300823176|ref|ZP_07103309.1| signal peptide peptidase SppA [Escherichia coli MS 119-7]
 gi|331677647|ref|ZP_08378322.1| signal peptide peptidase SppA, 67K type [Escherichia coli H591]
 gi|291322968|gb|EFE62396.1| signal peptide peptidase SppA [Escherichia coli B088]
 gi|300524330|gb|EFK45399.1| signal peptide peptidase SppA [Escherichia coli MS 119-7]
 gi|324016441|gb|EGB85660.1| signal peptide peptidase SppA [Escherichia coli MS 117-3]
 gi|331074107|gb|EGI45427.1| signal peptide peptidase SppA, 67K type [Escherichia coli H591]
          Length = 666

 Score = 41.8 bits (97), Expect = 0.064,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 397 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 456

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 457 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 516

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 517 LPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 572


>gi|320194522|gb|EFW69153.1| Protease IV [Escherichia coli WV_060327]
          Length = 618

 Score = 41.8 bits (97), Expect = 0.065,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 349 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 409 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 468

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 469 LPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 524


>gi|320184010|gb|EFW58833.1| Protease IV [Shigella flexneri CDC 796-83]
 gi|332096360|gb|EGJ01361.1| signal peptide peptidase SppA, 67K type [Shigella boydii 3594-74]
          Length = 618

 Score = 41.8 bits (97), Expect = 0.065,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 349 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 409 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 468

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 469 LPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 524


>gi|306814983|ref|ZP_07449139.1| protease 4 [Escherichia coli NC101]
 gi|305851631|gb|EFM52084.1| protease 4 [Escherichia coli NC101]
          Length = 618

 Score = 41.8 bits (97), Expect = 0.065,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 39/181 (21%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 349 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 409 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 468

Query: 154 ---HAQDIVKIKRRLNEIY---------VKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
               AQ ++++   +   Y          ++   T E+++K        +  +A   G+V
Sbjct: 469 LPPEAQQMMQL--SIENGYKRFITLVANARHS--TPEQIDKIAQGHVW-TGQDAKANGLV 523

Query: 202 D 202
           D
Sbjct: 524 D 524


>gi|301026499|ref|ZP_07189929.1| signal peptide peptidase SppA [Escherichia coli MS 69-1]
 gi|300395517|gb|EFJ79055.1| signal peptide peptidase SppA [Escherichia coli MS 69-1]
          Length = 618

 Score = 41.8 bits (97), Expect = 0.065,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 349 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 409 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 468

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 469 LPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 524


>gi|222033518|emb|CAP76259.1| Protease 4 [Escherichia coli LF82]
 gi|312946365|gb|ADR27192.1| protease 4 [Escherichia coli O83:H1 str. NRG 857C]
          Length = 618

 Score = 41.8 bits (97), Expect = 0.065,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 349 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 409 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 468

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 469 LPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 524


>gi|218554334|ref|YP_002387247.1| protease 4 [Escherichia coli IAI1]
 gi|218361102|emb|CAQ98685.1| protease IV (signal peptide peptidase) [Escherichia coli IAI1]
          Length = 618

 Score = 41.8 bits (97), Expect = 0.065,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 349 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 409 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 468

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 469 LPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 524


>gi|170683467|ref|YP_001743483.1| protease 4 [Escherichia coli SMS-3-5]
 gi|170521185|gb|ACB19363.1| protease 4 [Escherichia coli SMS-3-5]
          Length = 622

 Score = 41.8 bits (97), Expect = 0.065,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 353 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 412

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 413 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 472

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 473 LPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 528


>gi|159026476|emb|CAO86448.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 603

 Score = 41.8 bits (97), Expect = 0.065,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 64/194 (32%), Gaps = 37/194 (19%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP-- 101
           IV   G   +     +  +L  L+ +   K + L INSPGG  TA   I   ++ +    
Sbjct: 326 IVEGQGDRGEIGGDKLAKELRKLQGKEEVKAVVLRINSPGGSATASEVILREIKRLDATK 385

Query: 102 PISTFCMGQAASMGSLLLSAGEKGMRFALPNARI--------LLHQPSGGF--------- 144
           P+       AAS G  +   G+   R    N  I        LL                
Sbjct: 386 PVIISMGDVAASGGYWIAMGGQ---RIFADNDTITGSIGVFGLLLNIQKIANNNGIDWDT 442

Query: 145 --SGQASDI------------ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
             +GQ +DI            E +   + +      E   +    + ++V          
Sbjct: 443 VKTGQLADISTITRPKNPQELEIYQAAVNRFYDLFIETVARGRKLSPDKVRTVAQGRVW- 501

Query: 191 SASEACDWGVVDKV 204
           +  +A   G+VD++
Sbjct: 502 TGKDAVKIGLVDQI 515


>gi|117623937|ref|YP_852850.1| protease 4 [Escherichia coli APEC O1]
 gi|218558634|ref|YP_002391547.1| protease 4 [Escherichia coli S88]
 gi|237705717|ref|ZP_04536198.1| protease IV [Escherichia sp. 3_2_53FAA]
 gi|115513061|gb|ABJ01136.1| protease IV [Escherichia coli APEC O1]
 gi|218365403|emb|CAR03126.1| protease IV (signal peptide peptidase) [Escherichia coli S88]
 gi|226900474|gb|EEH86733.1| protease IV [Escherichia sp. 3_2_53FAA]
 gi|315286440|gb|EFU45875.1| signal peptide peptidase SppA [Escherichia coli MS 110-3]
 gi|323952272|gb|EGB48145.1| signal peptide peptidase SppA [Escherichia coli H252]
 gi|323956534|gb|EGB52275.1| signal peptide peptidase SppA [Escherichia coli H263]
          Length = 618

 Score = 41.8 bits (97), Expect = 0.065,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 349 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 409 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 468

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 469 LPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 524


>gi|82776787|ref|YP_403136.1| protease 4 [Shigella dysenteriae Sd197]
 gi|81240935|gb|ABB61645.1| protease IV [Shigella dysenteriae Sd197]
          Length = 618

 Score = 41.8 bits (97), Expect = 0.065,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 349 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 409 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 468

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 469 LPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 524


>gi|82543829|ref|YP_407776.1| protease 4 [Shigella boydii Sb227]
 gi|81245240|gb|ABB65948.1| protease IV [Shigella boydii Sb227]
          Length = 618

 Score = 41.8 bits (97), Expect = 0.065,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 349 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 409 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 468

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 469 LPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 524


>gi|74311916|ref|YP_310335.1| protease 4 [Shigella sonnei Ss046]
 gi|73855393|gb|AAZ88100.1| protease IV, a signal peptide peptidase [Shigella sonnei Ss046]
          Length = 618

 Score = 41.8 bits (97), Expect = 0.065,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 349 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 409 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 468

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 469 LPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 524


>gi|157161228|ref|YP_001458546.1| protease 4 [Escherichia coli HS]
 gi|170019887|ref|YP_001724841.1| protease 4 [Escherichia coli ATCC 8739]
 gi|312969795|ref|ZP_07783978.1| signal peptide peptidase SppA, 67K type [Escherichia coli 1827-70]
 gi|157066908|gb|ABV06163.1| protease 4 [Escherichia coli HS]
 gi|169754815|gb|ACA77514.1| signal peptide peptidase SppA, 67K type [Escherichia coli ATCC
           8739]
 gi|310338080|gb|EFQ03169.1| signal peptide peptidase SppA, 67K type [Escherichia coli 1827-70]
          Length = 618

 Score = 41.8 bits (97), Expect = 0.065,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 349 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 409 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 468

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 469 LPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 524


>gi|188493917|ref|ZP_03001187.1| signal peptide peptidase SppA, 67K type [Escherichia coli 53638]
 gi|188489116|gb|EDU64219.1| signal peptide peptidase SppA, 67K type [Escherichia coli 53638]
          Length = 618

 Score = 41.8 bits (97), Expect = 0.065,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 349 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 409 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 468

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 469 LPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 524


>gi|26248024|ref|NP_754064.1| protease 4 [Escherichia coli CFT073]
 gi|91210983|ref|YP_540969.1| protease 4 [Escherichia coli UTI89]
 gi|110641888|ref|YP_669618.1| protease 4 [Escherichia coli 536]
 gi|215486982|ref|YP_002329413.1| protease 4 [Escherichia coli O127:H6 str. E2348/69]
 gi|218699668|ref|YP_002407297.1| protease 4 [Escherichia coli IAI39]
 gi|300938898|ref|ZP_07153600.1| signal peptide peptidase SppA [Escherichia coli MS 21-1]
 gi|300975717|ref|ZP_07173137.1| signal peptide peptidase SppA [Escherichia coli MS 200-1]
 gi|300994367|ref|ZP_07180872.1| signal peptide peptidase SppA [Escherichia coli MS 45-1]
 gi|301050891|ref|ZP_07197742.1| signal peptide peptidase SppA [Escherichia coli MS 185-1]
 gi|312966966|ref|ZP_07781184.1| signal peptide peptidase SppA, 67K type [Escherichia coli 2362-75]
 gi|331657804|ref|ZP_08358766.1| signal peptide peptidase SppA, 67K type [Escherichia coli TA206]
 gi|26108427|gb|AAN80629.1|AE016761_204 Protease IV [Escherichia coli CFT073]
 gi|91072557|gb|ABE07438.1| protease IV, a signal peptide peptidase [Escherichia coli UTI89]
 gi|110343480|gb|ABG69717.1| protease IV [Escherichia coli 536]
 gi|215265054|emb|CAS09441.1| protease IV (signal peptide peptidase) [Escherichia coli O127:H6
           str. E2348/69]
 gi|218369654|emb|CAR17423.1| protease IV (signal peptide peptidase) [Escherichia coli IAI39]
 gi|294489545|gb|ADE88301.1| protease 4 [Escherichia coli IHE3034]
 gi|300297410|gb|EFJ53795.1| signal peptide peptidase SppA [Escherichia coli MS 185-1]
 gi|300308679|gb|EFJ63199.1| signal peptide peptidase SppA [Escherichia coli MS 200-1]
 gi|300406213|gb|EFJ89751.1| signal peptide peptidase SppA [Escherichia coli MS 45-1]
 gi|300456158|gb|EFK19651.1| signal peptide peptidase SppA [Escherichia coli MS 21-1]
 gi|307553787|gb|ADN46562.1| protease IV [Escherichia coli ABU 83972]
 gi|307626750|gb|ADN71054.1| protease 4 [Escherichia coli UM146]
 gi|312288430|gb|EFR16332.1| signal peptide peptidase SppA, 67K type [Escherichia coli 2362-75]
 gi|315290471|gb|EFU49846.1| signal peptide peptidase SppA [Escherichia coli MS 153-1]
 gi|315299847|gb|EFU59087.1| signal peptide peptidase SppA [Escherichia coli MS 16-3]
 gi|324007104|gb|EGB76323.1| signal peptide peptidase SppA [Escherichia coli MS 57-2]
 gi|324011509|gb|EGB80728.1| signal peptide peptidase SppA [Escherichia coli MS 60-1]
 gi|331056052|gb|EGI28061.1| signal peptide peptidase SppA, 67K type [Escherichia coli TA206]
          Length = 618

 Score = 41.8 bits (97), Expect = 0.065,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 349 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 409 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 468

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 469 LPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 524


>gi|332090582|gb|EGI95679.1| signal peptide peptidase SppA, 67K type [Shigella boydii 5216-82]
          Length = 618

 Score = 41.8 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 349 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 409 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 468

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 469 LPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 524


>gi|331668455|ref|ZP_08369303.1| signal peptide peptidase SppA, 67K type [Escherichia coli TA271]
 gi|331063649|gb|EGI35560.1| signal peptide peptidase SppA, 67K type [Escherichia coli TA271]
          Length = 622

 Score = 41.8 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 353 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 412

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 413 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 472

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 473 LPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 528


>gi|323978052|gb|EGB73138.1| signal peptide peptidase SppA [Escherichia coli TW10509]
          Length = 622

 Score = 41.8 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 353 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 412

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 413 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITKA 472

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 473 LPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 528


>gi|323186946|gb|EFZ72264.1| signal peptide peptidase SppA, 67K type [Escherichia coli RN587/1]
          Length = 618

 Score = 41.8 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 349 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 409 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 468

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 469 LPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 524


>gi|323186216|gb|EFZ71568.1| signal peptide peptidase SppA, 67K type [Escherichia coli 1357]
          Length = 618

 Score = 41.8 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 349 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 409 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 468

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 469 LPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 524


>gi|320181201|gb|EFW56120.1| Protease IV [Shigella boydii ATCC 9905]
          Length = 618

 Score = 41.8 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 349 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 409 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 468

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 469 LPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 524


>gi|291282945|ref|YP_003499763.1| Protease 4 [Escherichia coli O55:H7 str. CB9615]
 gi|209768384|gb|ACI82504.1| protease IV [Escherichia coli]
 gi|290762818|gb|ADD56779.1| Protease 4 [Escherichia coli O55:H7 str. CB9615]
 gi|320658432|gb|EFX26126.1| protease 4 [Escherichia coli O55:H7 str. USDA 5905]
          Length = 618

 Score = 41.8 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 349 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 409 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 468

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 469 LPPEAQQMMQLSIKNGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 524


>gi|218689707|ref|YP_002397919.1| protease 4 [Escherichia coli ED1a]
 gi|218427271|emb|CAR08161.2| protease IV (signal peptide peptidase) [Escherichia coli ED1a]
          Length = 618

 Score = 41.8 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 349 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 409 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 468

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 469 LPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 524


>gi|209919128|ref|YP_002293212.1| protease 4 [Escherichia coli SE11]
 gi|218695325|ref|YP_002402992.1| protease 4 [Escherichia coli 55989]
 gi|209912387|dbj|BAG77461.1| protease IV [Escherichia coli SE11]
 gi|218352057|emb|CAU97794.1| protease IV (signal peptide peptidase) [Escherichia coli 55989]
          Length = 618

 Score = 41.8 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 349 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 409 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 468

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 469 LPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 524


>gi|193068967|ref|ZP_03049926.1| protease 4 [Escherichia coli E110019]
 gi|192957762|gb|EDV88206.1| protease 4 [Escherichia coli E110019]
          Length = 622

 Score = 41.8 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 353 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 412

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 413 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 472

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 473 LPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 528


>gi|193065780|ref|ZP_03046843.1| protease 4 [Escherichia coli E22]
 gi|192926552|gb|EDV81183.1| protease 4 [Escherichia coli E22]
 gi|320197951|gb|EFW72559.1| Protease IV [Escherichia coli EC4100B]
          Length = 622

 Score = 41.8 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 353 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 412

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 413 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 472

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 473 LPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 528


>gi|191171758|ref|ZP_03033305.1| protease 4 [Escherichia coli F11]
 gi|227885806|ref|ZP_04003611.1| S49 family peptidase IV [Escherichia coli 83972]
 gi|190908088|gb|EDV67680.1| protease 4 [Escherichia coli F11]
 gi|227837379|gb|EEJ47845.1| S49 family peptidase IV [Escherichia coli 83972]
          Length = 622

 Score = 41.8 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 353 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 412

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 413 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 472

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 473 LPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 528


>gi|187776034|ref|ZP_02992803.1| protease 4 [Escherichia coli O157:H7 str. EC4196]
 gi|189010434|ref|ZP_03006318.1| protease 4 [Escherichia coli O157:H7 str. EC4076]
 gi|189402336|ref|ZP_03006680.1| protease 4 [Escherichia coli O157:H7 str. EC4401]
 gi|189403499|ref|ZP_03007105.1| protease 4 [Escherichia coli O157:H7 str. EC4486]
 gi|189405098|ref|ZP_03007686.1| protease 4 [Escherichia coli O157:H7 str. EC869]
 gi|189406058|ref|ZP_03008051.1| protease 4 [Escherichia coli O157:H7 str. EC508]
 gi|208816614|ref|ZP_03257734.1| protease 4 [Escherichia coli O157:H7 str. EC4045]
 gi|208818606|ref|ZP_03258926.1| protease 4 [Escherichia coli O157:H7 str. EC4042]
 gi|217328805|ref|ZP_03444886.1| protease 4 [Escherichia coli O157:H7 str. TW14588]
 gi|187769467|gb|EDU33311.1| protease 4 [Escherichia coli O157:H7 str. EC4196]
 gi|189000232|gb|EDU69218.1| protease 4 [Escherichia coli O157:H7 str. EC4076]
 gi|189356179|gb|EDU74598.1| protease 4 [Escherichia coli O157:H7 str. EC4401]
 gi|189360401|gb|EDU78820.1| protease 4 [Escherichia coli O157:H7 str. EC4486]
 gi|189372021|gb|EDU90437.1| protease 4 [Escherichia coli O157:H7 str. EC869]
 gi|189376761|gb|EDU95177.1| protease 4 [Escherichia coli O157:H7 str. EC508]
 gi|208730957|gb|EDZ79646.1| protease 4 [Escherichia coli O157:H7 str. EC4045]
 gi|208738729|gb|EDZ86411.1| protease 4 [Escherichia coli O157:H7 str. EC4042]
 gi|217318152|gb|EEC26579.1| protease 4 [Escherichia coli O157:H7 str. TW14588]
 gi|326343685|gb|EGD67447.1| Protease IV [Escherichia coli O157:H7 str. 1125]
          Length = 622

 Score = 41.8 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 353 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 412

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 413 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 472

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 473 LPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 528


>gi|15831726|ref|NP_310499.1| protease 4 [Escherichia coli O157:H7 str. Sakai]
 gi|168749412|ref|ZP_02774434.1| protease 4 [Escherichia coli O157:H7 str. EC4113]
 gi|168762162|ref|ZP_02787169.1| protease 4 [Escherichia coli O157:H7 str. EC4501]
 gi|195937452|ref|ZP_03082834.1| protease 4 [Escherichia coli O157:H7 str. EC4024]
 gi|208810557|ref|ZP_03252433.1| protease 4 [Escherichia coli O157:H7 str. EC4206]
 gi|209400845|ref|YP_002270837.1| protease 4 [Escherichia coli O157:H7 str. EC4115]
 gi|254793384|ref|YP_003078221.1| protease 4 [Escherichia coli O157:H7 str. TW14359]
 gi|261227739|ref|ZP_05942020.1| protease 4 [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258095|ref|ZP_05950628.1| protease 4 [Escherichia coli O157:H7 str. FRIK966]
 gi|13361939|dbj|BAB35895.1| protease IV [Escherichia coli O157:H7 str. Sakai]
 gi|188016236|gb|EDU54358.1| protease 4 [Escherichia coli O157:H7 str. EC4113]
 gi|189367493|gb|EDU85909.1| protease 4 [Escherichia coli O157:H7 str. EC4501]
 gi|208725073|gb|EDZ74780.1| protease 4 [Escherichia coli O157:H7 str. EC4206]
 gi|209162245|gb|ACI39678.1| protease 4 [Escherichia coli O157:H7 str. EC4115]
 gi|209768380|gb|ACI82502.1| protease IV [Escherichia coli]
 gi|209768382|gb|ACI82503.1| protease IV [Escherichia coli]
 gi|209768386|gb|ACI82505.1| protease IV [Escherichia coli]
 gi|254592784|gb|ACT72145.1| protease IV (signal peptide peptidase) [Escherichia coli O157:H7
           str. TW14359]
 gi|320188454|gb|EFW63116.1| Protease IV [Escherichia coli O157:H7 str. EC1212]
 gi|326342134|gb|EGD65915.1| Protease IV [Escherichia coli O157:H7 str. 1044]
          Length = 618

 Score = 41.8 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 349 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 409 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 468

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 469 LPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 524


>gi|187733275|ref|YP_001880563.1| protease 4 [Shigella boydii CDC 3083-94]
 gi|194428542|ref|ZP_03061081.1| protease 4 [Escherichia coli B171]
 gi|194433484|ref|ZP_03065762.1| protease 4 [Shigella dysenteriae 1012]
 gi|260844115|ref|YP_003221893.1| protease IV [Escherichia coli O103:H2 str. 12009]
 gi|260855631|ref|YP_003229522.1| protease IV [Escherichia coli O26:H11 str. 11368]
 gi|260868291|ref|YP_003234693.1| protease IV [Escherichia coli O111:H- str. 11128]
 gi|307310662|ref|ZP_07590308.1| signal peptide peptidase SppA, 67K type [Escherichia coli W]
 gi|187430267|gb|ACD09541.1| protease 4 [Shigella boydii CDC 3083-94]
 gi|194413420|gb|EDX29703.1| protease 4 [Escherichia coli B171]
 gi|194418247|gb|EDX34338.1| protease 4 [Shigella dysenteriae 1012]
 gi|209768378|gb|ACI82501.1| protease IV [Escherichia coli]
 gi|257754280|dbj|BAI25782.1| protease IV [Escherichia coli O26:H11 str. 11368]
 gi|257759262|dbj|BAI30759.1| protease IV [Escherichia coli O103:H2 str. 12009]
 gi|257764647|dbj|BAI36142.1| protease IV [Escherichia coli O111:H- str. 11128]
 gi|306908840|gb|EFN39336.1| signal peptide peptidase SppA, 67K type [Escherichia coli W]
 gi|315061069|gb|ADT75396.1| protease IV (signal peptide peptidase) [Escherichia coli W]
 gi|320176722|gb|EFW51758.1| Protease IV [Shigella dysenteriae CDC 74-1112]
 gi|320641615|gb|EFX11003.1| protease 4 [Escherichia coli O157:H7 str. G5101]
 gi|320646975|gb|EFX15808.1| protease 4 [Escherichia coli O157:H- str. 493-89]
 gi|320652257|gb|EFX20555.1| protease 4 [Escherichia coli O157:H- str. H 2687]
 gi|320657858|gb|EFX25620.1| protease 4 [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320668330|gb|EFX35157.1| protease 4 [Escherichia coli O157:H7 str. LSU-61]
 gi|323152988|gb|EFZ39257.1| signal peptide peptidase SppA, 67K type [Escherichia coli EPECa14]
 gi|323158527|gb|EFZ44542.1| signal peptide peptidase SppA, 67K type [Escherichia coli E128010]
 gi|323166270|gb|EFZ52045.1| signal peptide peptidase SppA, 67K type [Shigella sonnei 53G]
 gi|323175160|gb|EFZ60774.1| signal peptide peptidase SppA, 67K type [Escherichia coli LT-68]
 gi|323180545|gb|EFZ66090.1| signal peptide peptidase SppA, 67K type [Escherichia coli 1180]
 gi|323948173|gb|EGB44162.1| signal peptide peptidase SppA [Escherichia coli H120]
 gi|324119252|gb|EGC13140.1| signal peptide peptidase SppA [Escherichia coli E1167]
 gi|332085809|gb|EGI90973.1| signal peptide peptidase SppA, 67K type [Shigella dysenteriae
           155-74]
          Length = 618

 Score = 41.8 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 349 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 409 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 468

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 469 LPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 524


>gi|300930753|ref|ZP_07146126.1| signal peptide peptidase SppA [Escherichia coli MS 187-1]
 gi|300461386|gb|EFK24879.1| signal peptide peptidase SppA [Escherichia coli MS 187-1]
          Length = 666

 Score = 41.8 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 397 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 456

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 457 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 516

Query: 154 ---HAQDIVKIK-----RRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 517 LPPEAQLMMQLNIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 572


>gi|324017645|gb|EGB86864.1| putative signal peptide peptidase SppA [Escherichia coli MS 117-3]
          Length = 426

 Score = 41.8 bits (97), Expect = 0.067,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 95  NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 154

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 155 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 214

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   +R   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 215 PDDVRETLQSRMDATRRMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 272

Query: 207 S 207
           S
Sbjct: 273 S 273


>gi|309788853|ref|ZP_07683448.1| signal peptide peptidase SppA, 67K type [Shigella dysenteriae 1617]
 gi|308923124|gb|EFP68636.1| signal peptide peptidase SppA, 67K type [Shigella dysenteriae 1617]
          Length = 594

 Score = 41.8 bits (97), Expect = 0.068,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 325 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 384

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 385 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 444

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 445 LPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 500


>gi|2129226|pir||C64381 proteinase IV (EC 3.4.-.-) - Methanococcus jannaschii
          Length = 315

 Score = 41.8 bits (97), Expect = 0.068,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 71/194 (36%), Gaps = 31/194 (15%)

Query: 50  QIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG--MAIYDTMQFIKPPISTFC 107
             +   A      L  LE ++  K + L +NSPGG V A   +A        K P+  + 
Sbjct: 67  PQQKKDARYYINLLDDLEKDDSVKGVLLVVNSPGGEVIASEKLARKVEELAKKKPVVVYV 126

Query: 108 MGQAASMGSLLLSA------------GEKGMRFALPNARILLH----QPSGGFSGQASDI 151
            G  AS   ++ +             G  G+R  L +   L+       +   +G+  DI
Sbjct: 127 EGLDASGAYMVSAPADYIVAEKHSIVGSIGVRMDLMHYYGLMKKLGINVTTIKAGKYKDI 186

Query: 152 -----ERHAQDIVKIKRRLNEIY-------VKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
                    ++   +++ +NE Y        ++   +     K  D   I S  +A   G
Sbjct: 187 GSPFRPMTKEEKEYLQKMINETYMDFVKWVAEHRHLSINYTLKIAD-GKIYSGEDAKKVG 245

Query: 200 VVDKVLMSRIDIEE 213
           +VD+V      +++
Sbjct: 246 LVDEVGTEEDALKK 259


>gi|262039165|ref|ZP_06012485.1| signal peptide peptidase SppA, 67K type [Leptotrichia goodfellowii
           F0264]
 gi|261746781|gb|EEY34300.1| signal peptide peptidase SppA, 67K type [Leptotrichia goodfellowii
           F0264]
          Length = 595

 Score = 41.8 bits (97), Expect = 0.070,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 29/68 (42%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  +L  L      K + L +NSPGG   A   IY  +  I  P+       AAS G 
Sbjct: 335 DNMAEKLKELSKIKDLKGVVLRVNSPGGSALASEMIYQMLSKINVPVYVSMSEVAASGGY 394

Query: 117 LLLSAGEK 124
            +  +G+K
Sbjct: 395 YISMSGKK 402


>gi|14591292|ref|NP_143370.1| nfeD protein [Pyrococcus horikoshii OT3]
 gi|3257935|dbj|BAA30618.1| 441aa long hypothetical nfeD protein [Pyrococcus horikoshii OT3]
          Length = 441

 Score = 41.8 bits (97), Expect = 0.072,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 58/143 (40%), Gaps = 15/143 (10%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM---GQAASMGSLLLSAGEKGMRFALP 131
           I + +++PGG   A M I   +Q  K P+  +       AAS G+ +       +    P
Sbjct: 56  IIIELDTPGGRADAMMNIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSH--LIAMAP 113

Query: 132 NARILLHQPSGGFSGQASDIE----RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
              I   +P  G+S   S IE         I  IK        +  G+     E+ + +D
Sbjct: 114 GTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKS-----LAQESGRNATIAEEFITKD 168

Query: 188 HIMSASEACDWGVVDKVLMSRID 210
             ++  EA  +GV+ +V+   I+
Sbjct: 169 LSLTPEEALKYGVI-EVVARDIN 190


>gi|300771388|ref|ZP_07081264.1| signal peptide peptidase SppA [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300762058|gb|EFK58878.1| signal peptide peptidase SppA [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 589

 Score = 41.8 bits (97), Expect = 0.072,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 76/212 (35%), Gaps = 37/212 (17%)

Query: 26  TNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQ-LLFLEAENPQKEISLYINSPGG 84
           T+ GE    +   L  E  +         +A+   ++ L  L  ++  K +   +NSPGG
Sbjct: 301 TSEGEGRVAV---LYAEGDIVSGEGESGQIASDKVSRELRKLREDDRVKAVVFRVNSPGG 357

Query: 85  VVTAGMAIYD--TMQFIKPPISTFCMGQAASMGSLLLS------------AGEKGMRFAL 130
              A   I+    +     PI       AAS G  + +             G  G+   +
Sbjct: 358 SALASDVIWREVVLTKKVKPIIVSMGDYAASGGYYISAAADSIFAEKNTITGSIGVFGLI 417

Query: 131 PNARILLHQPSGGF-----SGQASDIE------RHAQDIVKIKRRLNEIYVKNCGK---- 175
           PN + LL+   G       +G  +D+         A++   I+  +N+ Y     K    
Sbjct: 418 PNFKGLLNDKLGIHFDGVKTGTYADLMSSPDRPLTAEERNIIQLEVNKTYGSFTKKVAEG 477

Query: 176 ---TYEEVEKTLDRDHIMSASEACDWGVVDKV 204
              +   V+         +  +A + G+VD++
Sbjct: 478 RKLSVANVDSIGQGRVW-TGEQAVEIGLVDRI 508


>gi|149915902|ref|ZP_01904426.1| hypothetical protein RAZWK3B_07479 [Roseobacter sp. AzwK-3b]
 gi|149810225|gb|EDM70071.1| hypothetical protein RAZWK3B_07479 [Roseobacter sp. AzwK-3b]
          Length = 275

 Score = 41.8 bits (97), Expect = 0.072,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 66/179 (36%), Gaps = 26/179 (14%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
           V V+  I+   A  I + +    A      I L +++PGG+V A M I   ++     ++
Sbjct: 61  VNVSRMIDLEDAQSIISAIK---ATPANTPIDLVLHTPGGLVLAAMQIARAVETHPAKVT 117

Query: 105 TFCMGQAASMGSLLLS------AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
            F    A S G+L+         GE  M   +    + +   S   +  A  IE  +   
Sbjct: 118 VFVPIYAMSGGTLIALAADEIVMGEFSMLGPIDPQIMGISAASIIAARDAKPIEHVSDVA 177

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDR-----------------DHIMSASEACDWGV 200
           + +    ++   +      E +   ++R                 D+ ++ +EA + G+
Sbjct: 178 LVLADVSDKAIAQVVRGAVEIMTPRMERGKAEELAKTLASGTWTHDYALTPAEARELGL 236


>gi|89100078|ref|ZP_01172947.1| signal peptide peptidase [Bacillus sp. NRRL B-14911]
 gi|89085168|gb|EAR64300.1| signal peptide peptidase [Bacillus sp. NRRL B-14911]
          Length = 358

 Score = 41.8 bits (97), Expect = 0.073,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 66/177 (37%), Gaps = 37/177 (20%)

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM----QFIKPPISTFCMGQAASMG 115
             +L  ++ ++  K + L +NSPGG V     I+D +    +  K P+       AAS G
Sbjct: 114 MKKLDHVKEDDSVKAVILRVNSPGGGVVESSEIHDKIVEIQKEAKKPVYISMGSMAASGG 173

Query: 116 SLLLSAGEKGMRFALP----NARILLHQPSGGFS--------------GQASDIERHAQD 157
             + +  EK   +A P     +  ++ Q                    G   DI   +++
Sbjct: 174 YYISAPAEKI--YASPETLTGSLGVIMQGYNYAGLAEKYGVEFVTIKSGPYKDIMSPSRE 231

Query: 158 IVKIKRRLNEIYVKNC------------GKTYEEVEKTLDRDHIMSASEACDWGVVD 202
           + + +R + +  + N             G   ++V K  D   I    +A +  ++D
Sbjct: 232 MTEEEREILQSMIDNSYEGFVKVISEGRGIPADQVRKIAD-GRIYDGRQAKELNLID 287


>gi|301307482|ref|ZP_07213470.1| putative signal peptide peptidase SppA [Escherichia coli MS 124-1]
 gi|300837352|gb|EFK65112.1| putative signal peptide peptidase SppA [Escherichia coli MS 124-1]
          Length = 445

 Score = 41.4 bits (96), Expect = 0.075,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 114 NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 173

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 174 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 233

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   +R   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 234 PDDVRETLQSRMDATRRMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 291

Query: 207 S 207
           S
Sbjct: 292 S 292


>gi|74312884|ref|YP_311303.1| putative minor capsid protein [Shigella sonnei Ss046]
 gi|73856361|gb|AAZ89068.1| putative minor capsid protein precursor [Shigella sonnei Ss046]
          Length = 426

 Score = 41.4 bits (96), Expect = 0.075,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 95  NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 154

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 155 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 214

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   +R   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 215 PDDVRETLQSRMDATRRMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 272

Query: 207 S 207
           S
Sbjct: 273 S 273


>gi|283833434|ref|ZP_06353175.1| signal peptide peptidase SppA [Citrobacter youngae ATCC 29220]
 gi|291071088|gb|EFE09197.1| signal peptide peptidase SppA [Citrobacter youngae ATCC 29220]
          Length = 618

 Score = 41.4 bits (96), Expect = 0.075,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 58/179 (32%), Gaps = 35/179 (19%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY---DTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG V+A   I       +    P+     G AA
Sbjct: 349 GDTTAAQIREARLDPKVKAIVLRVNSPGGSVSASEVIRAELAAAKAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIERHAQ 156
           S G  + +             G  G+   +      L        G A+    DI     
Sbjct: 409 SGGYWISTPASYIVANPSTLTGSIGIFGVINTVENSLDSIGVHTDGVATSPLADISITKA 468

Query: 157 ---DIVKIKR-RLNEIY---------VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
              ++ ++ +  +   Y          +    T E+++K        +  +A   G+VD
Sbjct: 469 LPPEVQQMMQLSIENGYKRFITLVADARKT--TPEQIDKIAQGHVW-TGQDAKANGLVD 524


>gi|237731223|ref|ZP_04561704.1| protease 4 [Citrobacter sp. 30_2]
 gi|226906762|gb|EEH92680.1| protease 4 [Citrobacter sp. 30_2]
          Length = 618

 Score = 41.4 bits (96), Expect = 0.075,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 58/179 (32%), Gaps = 35/179 (19%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY---DTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG V+A   I       +    P+     G AA
Sbjct: 349 GDTTAAQIREARLDPKVKAIVLRVNSPGGSVSASEVIRAELAAAKAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIERHAQ 156
           S G  + +             G  G+   +      L        G A+    DI     
Sbjct: 409 SGGYWISTPASYIVANPSTLTGSIGIFGVINTVENSLDSIGVHTDGVATSPLADISITKA 468

Query: 157 ---DIVKIKR-RLNEIY---------VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
              ++ ++ +  +   Y          +    T E+++K        +  +A   G+VD
Sbjct: 469 LPPEVQQMMQLSIENGYKRFITLVADARKT--TPEQIDKIAQGHVW-TGQDAKANGLVD 524


>gi|126696719|ref|YP_001091605.1| signal peptide peptidase SppA (protease IV) [Prochlorococcus
           marinus str. MIT 9301]
 gi|126543762|gb|ABO18004.1| signal peptide peptidase SppA (protease IV) [Prochlorococcus
           marinus str. MIT 9301]
          Length = 269

 Score = 41.4 bits (96), Expect = 0.075,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 66/205 (32%), Gaps = 35/205 (17%)

Query: 33  YDIYSRLLKERI--VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGM 90
              + R  K+R+  + +   I       +   L  +E       I + I+SPGG V    
Sbjct: 2   IWPFRRKSKKRMARIVIDEPITSSTRVSVLKALKQIEDREFPALI-VRIDSPGGTVGDSQ 60

Query: 91  AIYDTMQFIKPPISTFCMGQA---ASMGSLL------------LSAGEKGMRFALPNARI 135
            IY  ++ +K              AS G  +               G  G+     N   
Sbjct: 61  EIYSAIKRLKNKGCKVIASFGNISASGGVYIGVASDKIVANPGTITGSIGVIIRGNNLSE 120

Query: 136 LLHQPSGGF----SGQASDI------------ERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
           LL +    F    SG   DI                  I +  ++  E          EE
Sbjct: 121 LLDKVGIKFETVKSGVFKDILSPDKPLSEEGRRLLQGLIDESYKQFTEAVADGRNLPVEE 180

Query: 180 VEKTLDRDHIMSASEACDWGVVDKV 204
           V K  D   I + ++A + G+VD+V
Sbjct: 181 VRKFAD-GRIFTGTQAKELGLVDEV 204


>gi|331651533|ref|ZP_08352553.1| minor capsid protein C (GPC) [Escherichia coli M718]
 gi|331050806|gb|EGI22863.1| minor capsid protein C (GPC) [Escherichia coli M718]
          Length = 484

 Score = 41.4 bits (96), Expect = 0.077,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 153 NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 212

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 213 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 272

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   ++   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 273 PDDVRETLQSRMDATRQMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 330

Query: 207 S 207
           S
Sbjct: 331 S 331


>gi|329957885|ref|ZP_08298360.1| signal peptide peptidase SppA [Bacteroides clarus YIT 12056]
 gi|328522762|gb|EGF49871.1| signal peptide peptidase SppA [Bacteroides clarus YIT 12056]
          Length = 588

 Score = 41.4 bits (96), Expect = 0.077,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 66/178 (37%), Gaps = 31/178 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP--PISTFCMGQAAS 113
           +  +   L  L+ +   K + L +NSPGG       I+  +  +K   P+       AAS
Sbjct: 329 SEKVIKDLRKLKDDENVKAVVLRVNSPGGSAYGSEQIWYAVNQLKKEKPVIVSMGDYAAS 388

Query: 114 MGSLLLSA------------GEKGMRFALPNARILL-----------HQPSGGFSGQASD 150
            G  +               G  G+   +PNA+ L              P   F      
Sbjct: 389 GGYYIACNADTIVAEPTTLTGSIGIFGMMPNAKGLTEKLGVNFDVVKTNPYADFGNLTRP 448

Query: 151 IERHAQDIVKIK-RRLNEIYVKNC----GKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
           +    + ++++   +  E+++  C    G + EE++K        + S A + G+VD+
Sbjct: 449 MNDGEKGLMQMYVNKGYELFLTRCSDGRGISMEELDKIAQGRVW-TGSTAKELGLVDE 505


>gi|309701424|emb|CBJ00728.1| Minor capsid protein [Escherichia coli ETEC H10407]
          Length = 439

 Score = 41.4 bits (96), Expect = 0.077,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 61/182 (33%), Gaps = 34/182 (18%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVV---TAGMAIYDTMQFIKPPISTFCMGQAAS 113
             I A+L    ++     I L +++PGG+V        I   M+ IKP +         S
Sbjct: 108 NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARMRDIKP-VWALANDMNCS 166

Query: 114 MGSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA--- 148
            G LL S             G  G+  A  N             L++  S    G     
Sbjct: 167 AGQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSH 226

Query: 149 --SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
              D+    Q  +   ++   +      G + + V    +     S  EA D G+ D+++
Sbjct: 227 LPDDVRETLQSRMDATRQMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELV 284

Query: 206 MS 207
            S
Sbjct: 285 NS 286


>gi|26249012|ref|NP_755052.1| putative capsid protein of prophage [Escherichia coli CFT073]
 gi|26109419|gb|AAN81622.1|AE016765_24 Putative capsid protein of prophage [Escherichia coli CFT073]
          Length = 477

 Score = 41.4 bits (96), Expect = 0.077,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 146 NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 205

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 206 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 265

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   ++   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 266 PDDVRETLQSRMDATRQMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 323

Query: 207 S 207
           S
Sbjct: 324 S 324


>gi|329298719|ref|ZP_08256055.1| protease 4 [Plautia stali symbiont]
          Length = 618

 Score = 41.4 bits (96), Expect = 0.078,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 3/71 (4%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM---QFIKPPISTFCMGQAA 112
                AQ+     ++  K I L +NSPGG VTA  AI + +        P+     G AA
Sbjct: 349 GDTTAAQIRDARLDDKIKAIVLRVNSPGGSVTASEAIREELAAAHDAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSAGE 123
           S G  + +  +
Sbjct: 409 SGGYWISTPAD 419


>gi|300825402|ref|ZP_07105476.1| putative signal peptide peptidase SppA [Escherichia coli MS 119-7]
 gi|300522129|gb|EFK43198.1| putative signal peptide peptidase SppA [Escherichia coli MS 119-7]
          Length = 426

 Score = 41.4 bits (96), Expect = 0.078,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 95  NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 154

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 155 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 214

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   +R   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 215 PDDVRETLQSRMDATRRMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 272

Query: 207 S 207
           S
Sbjct: 273 S 273


>gi|320194281|gb|EFW68913.1| Head-tail preconnector protein GP5 [Escherichia coli WV_060327]
          Length = 439

 Score = 41.4 bits (96), Expect = 0.080,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 108 NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 167

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 168 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 227

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   +R   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 228 PDDVRETLQSRMDATRRMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 285

Query: 207 S 207
           S
Sbjct: 286 S 286


>gi|229521906|ref|ZP_04411323.1| protease IV [Vibrio cholerae TM 11079-80]
 gi|229340831|gb|EEO05836.1| protease IV [Vibrio cholerae TM 11079-80]
          Length = 616

 Score = 41.4 bits (96), Expect = 0.080,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 63/192 (32%), Gaps = 35/192 (18%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY---DTMQFIK 100
           I+  +          +   L     ++  K + L ++SPGG   A   I    + ++   
Sbjct: 336 IMDGSQPRGTVGGDTVAGLLREARNDSNVKAVVLRVDSPGGSAFASEVIRHEVEALKAAG 395

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNA---RILLHQPSGGF------------- 144
            P+       AAS G  +  + +K    A P      I +      F             
Sbjct: 396 KPVVVSMSSLAASGGYWISMSADKI--VAQPTTLTGSIGIFSVITTFEKGLNNLGIYTDG 453

Query: 145 --------SGQASDIERHAQD-----IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
                    G  + + + A++     I    +R   +  +  G T + V++        +
Sbjct: 454 VGTTPFSGQGMTTGLTQGAKEAIQLGIEHGYQRFISLVAEKRGLTLKAVDELAQGRVW-T 512

Query: 192 ASEACDWGVVDK 203
           A +A   G+VD+
Sbjct: 513 AQDAQTLGLVDQ 524


>gi|109821899|sp|P84723|CLPP_PINST RecName: Full=Putative ATP-dependent Clp protease proteolytic
           subunit; AltName: Full=Endopeptidase Clp; AltName:
           Full=PS7/PS12
          Length = 80

 Score = 41.4 bits (96), Expect = 0.080,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 24/71 (33%)

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
           R+++HQP+  +   A+++   A+                     E +   LDRD  MSA 
Sbjct: 15  RVMIHQPASSYY--AAEMHNEAK----------------TDNPEEVL--DLDRDVFMSA- 53

Query: 194 EACDWGVVDKV 204
               +G+VD V
Sbjct: 54  ---AYGIVDTV 61


>gi|331682243|ref|ZP_08382862.1| minor capsid protein C (GPC) [Escherichia coli H299]
 gi|331079874|gb|EGI51053.1| minor capsid protein C (GPC) [Escherichia coli H299]
          Length = 439

 Score = 41.4 bits (96), Expect = 0.080,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 108 NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 167

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 168 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 227

Query: 149 -SDIERHAQD-IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   +R   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 228 PDDVRETLQYRMDATRRMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 285

Query: 207 S 207
           S
Sbjct: 286 S 286


>gi|120601287|ref|YP_965687.1| signal peptide peptidase SppA, 36K type [Desulfovibrio vulgaris
           DP4]
 gi|120561516|gb|ABM27260.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49
           [Desulfovibrio vulgaris DP4]
          Length = 296

 Score = 41.4 bits (96), Expect = 0.080,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 76/193 (39%), Gaps = 33/193 (17%)

Query: 41  KERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           +  IV + G I D  A      +  L  +   + + + ++SPGG V     ++D ++ + 
Sbjct: 49  RIGIVRIEGMIGD--ARKTLEWMRKLAEDRTVRGVLVRVDSPGGAVAPSQELHDAVKRLA 106

Query: 101 PP--ISTFCMGQAASMGSLLLS------------AGEKGMRFALPNARILLHQP----SG 142
               +       AAS G ++ +             G  G++  +PN + L+ +       
Sbjct: 107 ADKPVVVSMGSLAASGGLMVSTGATRIVANPATITGSIGVKMEMPNVQGLMDKLGVARQT 166

Query: 143 GFSGQ----------ASDIERHAQD--IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
             SG            S+ ER      I+++  +   +  ++     E+V    D   I+
Sbjct: 167 LVSGDLKDAGSPFRAMSEAERAYFQSIIMEMYGQFVSMIAEDRNIPVEKVRSFAD-GRIL 225

Query: 191 SASEACDWGVVDK 203
           + S+A + G+VDK
Sbjct: 226 TGSQALELGLVDK 238


>gi|327252651|gb|EGE64308.1| minor capsid protein C [Escherichia coli STEC_7v]
          Length = 439

 Score = 41.4 bits (96), Expect = 0.081,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 108 NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 167

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 168 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 227

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   +R   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 228 PDDVRETLQSRMDATRRMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 285

Query: 207 S 207
           S
Sbjct: 286 S 286


>gi|323168446|gb|EFZ54126.1| minor capsid C protein [Shigella sonnei 53G]
          Length = 439

 Score = 41.4 bits (96), Expect = 0.081,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 108 NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 167

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 168 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 227

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   +R   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 228 PDDVRETLQSRMDATRRMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 285

Query: 207 S 207
           S
Sbjct: 286 S 286


>gi|330910981|gb|EGH39491.1| head-tail preconnector protein GP5 [Escherichia coli AA86]
          Length = 439

 Score = 41.4 bits (96), Expect = 0.081,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 108 NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 167

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 168 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 227

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   +R   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 228 PDDVRETLQSRMDATRRMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 285

Query: 207 S 207
           S
Sbjct: 286 S 286


>gi|320180588|gb|EFW55518.1| Head-tail preconnector protein GP5 [Shigella boydii ATCC 9905]
          Length = 439

 Score = 41.4 bits (96), Expect = 0.082,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 108 NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 167

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 168 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 227

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   +R   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 228 PDDVRETLQSRMDATRRMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 285

Query: 207 S 207
           S
Sbjct: 286 S 286


>gi|315252353|gb|EFU32321.1| putative signal peptide peptidase SppA [Escherichia coli MS 85-1]
          Length = 426

 Score = 41.4 bits (96), Expect = 0.082,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 95  NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 154

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 155 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 214

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   +R   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 215 PDDVRETLQSRMDATRRMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 272

Query: 207 S 207
           S
Sbjct: 273 S 273


>gi|320654518|gb|EFX22546.1| Minor capsid protein C from bacteriophage origin [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
          Length = 439

 Score = 41.4 bits (96), Expect = 0.082,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 108 NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 167

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 168 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 227

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   +R   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 228 PDDVRETLQSRMDATRRMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 285

Query: 207 S 207
           S
Sbjct: 286 S 286


>gi|300929060|ref|ZP_07144554.1| putative signal peptide peptidase SppA [Escherichia coli MS 187-1]
 gi|300462933|gb|EFK26426.1| putative signal peptide peptidase SppA [Escherichia coli MS 187-1]
          Length = 426

 Score = 41.4 bits (96), Expect = 0.082,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 95  NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 154

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 155 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 214

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   +R   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 215 PDDVRETLQSRMDATRRMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 272

Query: 207 S 207
           S
Sbjct: 273 S 273


>gi|323190876|gb|EFZ76143.1| minor capsid protein C [Escherichia coli RN587/1]
          Length = 439

 Score = 41.4 bits (96), Expect = 0.082,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 108 NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 167

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 168 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 227

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   +R   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 228 PDDVRETLQSRMDATRRMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 285

Query: 207 S 207
           S
Sbjct: 286 S 286


>gi|293418637|ref|ZP_06661072.1| capsid protein [Escherichia coli B088]
 gi|291325165|gb|EFE64580.1| capsid protein [Escherichia coli B088]
          Length = 439

 Score = 41.4 bits (96), Expect = 0.082,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 108 NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 167

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 168 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 227

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   +R   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 228 PDDVRETLQSRMDATRRMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 285

Query: 207 S 207
           S
Sbjct: 286 S 286


>gi|300917751|ref|ZP_07134397.1| putative signal peptide peptidase SppA [Escherichia coli MS 115-1]
 gi|300415028|gb|EFJ98338.1| putative signal peptide peptidase SppA [Escherichia coli MS 115-1]
          Length = 426

 Score = 41.4 bits (96), Expect = 0.083,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 95  NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 154

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 155 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 214

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   +R   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 215 PDDVRETLQSRMDATRRMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 272

Query: 207 S 207
           S
Sbjct: 273 S 273


>gi|300716991|ref|YP_003741794.1| Protease IV [Erwinia billingiae Eb661]
 gi|299062827|emb|CAX59947.1| Protease IV [Erwinia billingiae Eb661]
          Length = 618

 Score = 41.4 bits (96), Expect = 0.084,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 54/164 (32%), Gaps = 31/164 (18%)

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTM---QFIKPPISTFCMGQAAS------------ 113
           +   K I   +NSPGG VTA   I + +   +    P+     G AAS            
Sbjct: 362 DPKIKAIVFRVNSPGGSVTASETIREELAAAKEAGKPVVVSMGGMAASGGYWISTPANYI 421

Query: 114 MGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS----DI-----------ERHAQDI 158
           + S     G  G+   +      L        G ++    DI           +     I
Sbjct: 422 IASPSTLTGSIGIFGVINTVENTLDSIGVHTDGVSTSPLADISTTKALPPEVQQMMQMSI 481

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               +    +   +  KT E++++        + ++A   G+VD
Sbjct: 482 ENGYKNFLGLVAHSRNKTPEQIDQIAQGHVW-TGTDAKANGLVD 524


>gi|284921449|emb|CBG34518.1| phage minor capsid protein [contains: capsid assembly protein]
           [Escherichia coli 042]
          Length = 439

 Score = 41.4 bits (96), Expect = 0.084,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 108 NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 167

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 168 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 227

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   +R   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 228 PDDVRETLQSRMDATRRMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 285

Query: 207 S 207
           S
Sbjct: 286 S 286


>gi|193063327|ref|ZP_03044417.1| minor capsid protein C [Escherichia coli E22]
 gi|192930911|gb|EDV83515.1| minor capsid protein C [Escherichia coli E22]
          Length = 439

 Score = 41.4 bits (96), Expect = 0.084,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 108 NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 167

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 168 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 227

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   +R   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 228 PDDVRETLQSRMDATRRMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 285

Query: 207 S 207
           S
Sbjct: 286 S 286


>gi|294490182|gb|ADE88938.1| minor capsid protein C (GPC) [Escherichia coli IHE3034]
          Length = 439

 Score = 41.4 bits (96), Expect = 0.085,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 108 NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 167

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 168 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 227

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   +R   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 228 PDDVRETLQSRMDATRRMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 285

Query: 207 S 207
           S
Sbjct: 286 S 286


>gi|285019630|ref|YP_003377341.1| periplasmic serine protease [Xanthomonas albilineans GPE PC73]
 gi|283474848|emb|CBA17347.1| putative periplasmic serine protease protein [Xanthomonas
           albilineans]
          Length = 630

 Score = 41.4 bits (96), Expect = 0.085,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 67/185 (36%), Gaps = 35/185 (18%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD---TMQFIKPPIST 105
           G+I       +  Q    +A    K + L ++SPGG V A   I      ++    P+  
Sbjct: 351 GRIGGESTVQLLRQAREDDAV---KAVVLRVDSPGGEVFASEQIRREVVALKAAGKPVVV 407

Query: 106 FCMGQAASMGSLLLS------------AGEKGMRFALPNARILLHQPSGGFSG------- 146
                AAS G  +               G  G+   +PN    L +      G       
Sbjct: 408 SMGDYAASGGYWISMSADRIYADPSTITGSIGIFGMVPNIARALDKIGVHTDGVGTTRYA 467

Query: 147 QASDIERHAQDI--VKIKRRLNEIYVKNCGK-------TYEEVEKTLDRDHIMSASEACD 197
            A DI R    I    I+  +N+ Y    GK       + E +++ + R  + S ++A +
Sbjct: 468 GAFDISRPMDPIVGQLIQSAINKGYADFTGKVAQARGKSVEAIDQ-VARGRVWSGAQAKE 526

Query: 198 WGVVD 202
            G+VD
Sbjct: 527 RGLVD 531


>gi|150007180|ref|YP_001301923.1| putative membrane-bound serine protease [Parabacteroides distasonis
           ATCC 8503]
 gi|255015205|ref|ZP_05287331.1| putative membrane-bound serine protease [Bacteroides sp. 2_1_7]
 gi|298377605|ref|ZP_06987557.1| serine protease, ClpP class [Bacteroides sp. 3_1_19]
 gi|149935604|gb|ABR42301.1| conserved hypothetical protein, putative membrane-bound serine
           protease [Parabacteroides distasonis ATCC 8503]
 gi|298265624|gb|EFI07285.1| serine protease, ClpP class [Bacteroides sp. 3_1_19]
          Length = 459

 Score = 41.4 bits (96), Expect = 0.085,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 23/154 (14%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR------- 127
           I L++N+ GG++ +  ++   + +   P+  F    AAS G+L+  A +K          
Sbjct: 61  ILLHMNTYGGLLESADSMRTAILYSPIPVYVFIDNNAASAGALISIACKKIYMRKGANIG 120

Query: 128 ---------FALPNAR--ILLHQPSGGFSGQASD-IERHAQDIVKIKRRLNEIYVKNCGK 175
                     ALP+     +          Q  D + ++   I K KR  + +  +    
Sbjct: 121 AATVVNQTGAALPDKYQSYMRSMIRSTAEAQGKDTLIQNGDTIYKWKR--DPLIAEAMVD 178

Query: 176 TYEEVEKTLDRDHI--MSASEACDWGVVDKVLMS 207
               V   +D   +  +++ EA  WG  D +  S
Sbjct: 179 DRVIVPNLIDSGKVLTLTSQEALKWGYCDGIAES 212


>gi|257466515|ref|ZP_05630826.1| protease IV [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917670|ref|ZP_07913910.1| protease IV [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691545|gb|EFS28380.1| protease IV [Fusobacterium gonidiaformans ATCC 25563]
          Length = 564

 Score = 41.4 bits (96), Expect = 0.085,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 72/192 (37%), Gaps = 40/192 (20%)

Query: 47  VTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI--KPPIS 104
           +  +      TL   ++  ++ +   K + L INSPGG       +Y  ++ +  K P+ 
Sbjct: 307 LNLEGTIEDETLFLDEVKAIQKDQNVKGVILRINSPGGSALVADTMYHAVKKLREKIPVY 366

Query: 105 TFCMGQAASMGSLLLSAGEK------------GMRFALPNARILLHQPSGGFS----GQA 148
               G AAS G  + +AGEK            G+   +PN   L  + +        G+ 
Sbjct: 367 VSISGTAASGGYYVAAAGEKIFASPLSVTGSIGVVSMIPNFSNLEKKANVVTESISKGKY 426

Query: 149 SDI-----ERHAQDIVKIKRRLNEIYVKNCGKTYEEVE--KTLDRDH----------IMS 191
           +D+         ++  +I+     +Y        E V   + + +D            + 
Sbjct: 427 ADLYSYLQPLSEENYNRIREGNLGVYQDF----LEVVSSNRNIKKDFLDKNLAQGRVWL- 481

Query: 192 ASEACDWGVVDK 203
             EA + G++D+
Sbjct: 482 GIEAKENGLIDE 493


>gi|256840555|ref|ZP_05546063.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737827|gb|EEU51153.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 459

 Score = 41.4 bits (96), Expect = 0.085,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 23/154 (14%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR------- 127
           I L++N+ GG++ +  ++   + +   P+  F    AAS G+L+  A +K          
Sbjct: 61  ILLHMNTYGGLLESADSMRTAILYSPIPVYVFIDNNAASAGALISIACKKIYMRKGANIG 120

Query: 128 ---------FALPNAR--ILLHQPSGGFSGQASD-IERHAQDIVKIKRRLNEIYVKNCGK 175
                     ALP+     +          Q  D + ++   I K KR  + +  +    
Sbjct: 121 AATVVNQTGAALPDKYQSYMRSMIRSTAEAQGKDTLIQNGDTIYKWKR--DPLIAEAMVD 178

Query: 176 TYEEVEKTLDRDHI--MSASEACDWGVVDKVLMS 207
               V   +D   +  +++ EA  WG  D +  S
Sbjct: 179 DRVIVPNLIDSGKVLTLTSQEALKWGYCDGIAES 212


>gi|262381176|ref|ZP_06074314.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262296353|gb|EEY84283.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 459

 Score = 41.4 bits (96), Expect = 0.086,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 23/154 (14%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR------- 127
           I L++N+ GG++ +  ++   + +   P+  F    AAS G+L+  A +K          
Sbjct: 61  ILLHMNTYGGLLESADSMRTAILYSPIPVYVFIDNNAASAGALISIACKKIYMRKGANIG 120

Query: 128 ---------FALPNAR--ILLHQPSGGFSGQASD-IERHAQDIVKIKRRLNEIYVKNCGK 175
                     ALP+     +          Q  D + ++   I K KR  + +  +    
Sbjct: 121 AATVVNQTGAALPDKYQSYMRSMIRSTAEAQGKDTLIQNGDTIYKWKR--DPLIAEAMVD 178

Query: 176 TYEEVEKTLDRDHI--MSASEACDWGVVDKVLMS 207
               V   +D   +  +++ EA  WG  D +  S
Sbjct: 179 DRVIVPNLIDSGKVLTLTSQEALKWGYCDGIAES 212


>gi|218699885|ref|YP_002407514.1| minor capsid protein C from bacteriophage origin [Escherichia coli
           IAI39]
 gi|218369871|emb|CAR17645.1| Minor capsid protein C from bacteriophage origin [Escherichia coli
           IAI39]
          Length = 488

 Score = 41.4 bits (96), Expect = 0.087,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 153 NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 212

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 213 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 272

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   ++   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 273 PDDVRETLQSRMDATRQMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 330

Query: 207 S 207
           S
Sbjct: 331 S 331


>gi|324014985|gb|EGB84204.1| putative signal peptide peptidase SppA [Escherichia coli MS 60-1]
          Length = 426

 Score = 41.4 bits (96), Expect = 0.089,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 95  NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 154

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 155 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 214

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   +R   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 215 PDDVRETLQSRMDATRRIFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 272

Query: 207 S 207
           S
Sbjct: 273 S 273


>gi|300936151|ref|ZP_07151089.1| putative signal peptide peptidase SppA [Escherichia coli MS 21-1]
 gi|300458690|gb|EFK22183.1| putative signal peptide peptidase SppA [Escherichia coli MS 21-1]
          Length = 426

 Score = 41.4 bits (96), Expect = 0.090,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 95  NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 154

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 155 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 214

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   +R   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 215 PDDVRETLQSRMDATRRMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 272

Query: 207 S 207
           S
Sbjct: 273 S 273


>gi|291281485|ref|YP_003498303.1| Minor capsid protein C [Escherichia coli O55:H7 str. CB9615]
 gi|290761358|gb|ADD55319.1| Minor capsid protein C [Escherichia coli O55:H7 str. CB9615]
          Length = 439

 Score = 41.4 bits (96), Expect = 0.090,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 108 NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 167

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 168 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 227

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   +R   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 228 PDDVRETLQSRMDATRRMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 285

Query: 207 S 207
           S
Sbjct: 286 S 286


>gi|188533707|ref|YP_001907504.1| protease 4 [Erwinia tasmaniensis Et1/99]
 gi|188028749|emb|CAO96611.1| Protease IV [Erwinia tasmaniensis Et1/99]
          Length = 618

 Score = 41.4 bits (96), Expect = 0.090,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 57/164 (34%), Gaps = 31/164 (18%)

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTM---QFIKPPISTFCMGQAAS------------ 113
           +   K I   +NSPGG VTA   I + +   +    P+     G AAS            
Sbjct: 362 DPKIKAIVFRVNSPGGSVTASETIREELAAAKDAGKPVVVSMGGMAASGGYWVSTPANYV 421

Query: 114 MGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQA--------------SDIERHAQD-I 158
           + S     G  G+   +      L        G A              S++++  Q  I
Sbjct: 422 IASPATLTGSIGIFGVINTVENSLDAIGVHTDGVATSPLADVASTKALPSEVQQMMQLSI 481

Query: 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
            K  +    +  K+  KT  E+++        + ++A   G+VD
Sbjct: 482 DKGYQNFIGLVAKSRNKTPVEIDRIAQGHVW-TGNDAKANGLVD 524


>gi|170769088|ref|ZP_02903541.1| minor capsid protein C (GPC) [Escherichia albertii TW07627]
 gi|170122160|gb|EDS91091.1| minor capsid protein C (GPC) [Escherichia albertii TW07627]
          Length = 439

 Score = 41.4 bits (96), Expect = 0.090,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 108 NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 167

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 168 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 227

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   +R   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 228 PDDVRETLQSRMDATRRMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 285

Query: 207 S 207
           S
Sbjct: 286 S 286


>gi|191166606|ref|ZP_03028435.1| minor capsid protein C [Escherichia coli B7A]
 gi|194427933|ref|ZP_03060478.1| minor capsid protein C [Escherichia coli B171]
 gi|260842764|ref|YP_003220542.1| putative head protein/prohead protease [Escherichia coli O103:H2
           str. 12009]
 gi|190903411|gb|EDV63131.1| minor capsid protein C [Escherichia coli B7A]
 gi|194413908|gb|EDX30185.1| minor capsid protein C [Escherichia coli B171]
 gi|257757911|dbj|BAI29408.1| putative head protein/prohead protease [Escherichia coli O103:H2
           str. 12009]
          Length = 439

 Score = 41.4 bits (96), Expect = 0.090,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 108 NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 167

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 168 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 227

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   +R   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 228 PDDVRETLQSRMDATRRMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 285

Query: 207 S 207
           S
Sbjct: 286 S 286


>gi|320198084|gb|EFW72692.1| Head-tail preconnector protein GP5 [Escherichia coli EC4100B]
          Length = 439

 Score = 41.4 bits (96), Expect = 0.090,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 108 NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 167

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 168 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 227

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   +R   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 228 PDDVRETLQSRMDATRRMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 285

Query: 207 S 207
           S
Sbjct: 286 S 286


>gi|300818408|ref|ZP_07098618.1| signal peptide peptidase SppA [Escherichia coli MS 107-1]
 gi|300529048|gb|EFK50110.1| signal peptide peptidase SppA [Escherichia coli MS 107-1]
          Length = 666

 Score = 41.4 bits (96), Expect = 0.091,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 397 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 456

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 457 SGGYWISTPANYIVANPSTLTGSIGIFGVITTIENSLDSIGVHTDGVSTSPLADVSITRA 516

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 517 LPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 572


>gi|218704649|ref|YP_002412168.1| Minor capsid protein [Escherichia coli UMN026]
 gi|218431746|emb|CAR12628.1| Minor capsid protein [Contains: Capsid assembly protein NU3] from
           bacteriophage origin [Escherichia coli UMN026]
          Length = 439

 Score = 41.4 bits (96), Expect = 0.091,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 108 NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 167

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 168 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 227

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   +R   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 228 PDDVRETLQSRMDATRRMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 285

Query: 207 S 207
           S
Sbjct: 286 S 286


>gi|218553334|ref|YP_002386247.1| Minor capsid protein [Escherichia coli IAI1]
 gi|218360102|emb|CAQ97650.1| Minor capsid protein [Contains: Capsid assembly protein NU3] from
           bacteriophage origin [Escherichia coli IAI1]
 gi|323169838|gb|EFZ55494.1| minor capsid protein C [Escherichia coli LT-68]
          Length = 439

 Score = 41.4 bits (96), Expect = 0.091,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 108 NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 167

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 168 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 227

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   +R   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 228 PDDVRETLQSRMDATRRMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 285

Query: 207 S 207
           S
Sbjct: 286 S 286


>gi|118467204|ref|YP_883665.1| enoyl-CoA hydratase [Mycobacterium avium 104]
 gi|254776967|ref|ZP_05218483.1| enoyl-CoA hydratase [Mycobacterium avium subsp. avium ATCC 25291]
 gi|118168491|gb|ABK69388.1| enoyl-CoA hydratase [Mycobacterium avium 104]
          Length = 231

 Score = 41.4 bits (96), Expect = 0.095,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 19/110 (17%)

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           +     P+   C G A +MG+ LLS+G+   R A     I   Q +    G    I   A
Sbjct: 89  LLSYPKPVVMACTGHAIAMGAFLLSSGDH--RVAAHAYNI---QANEVAIGMV--IPYAA 141

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            +I+K++      Y +  G                    A   G VD+++
Sbjct: 142 MEIMKLRLT-PSAYQQASGLAK----------TFF-GETALAAGFVDEIV 179


>gi|323963686|gb|EGB59201.1| peptidase S49 [Escherichia coli M863]
          Length = 439

 Score = 41.4 bits (96), Expect = 0.097,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 108 NGIIARLQQAASDPMVAGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 167

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 168 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 227

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   +R   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 228 PDDVRETLQSRMDATRRMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 285

Query: 207 S 207
           S
Sbjct: 286 S 286


>gi|71275280|ref|ZP_00651567.1| Peptidase S49, SppA 67 kDa type:Peptidase S49, SppA [Xylella
           fastidiosa Dixon]
 gi|71900134|ref|ZP_00682275.1| Peptidase S49, SppA 67 kDa type:Peptidase S49, SppA [Xylella
           fastidiosa Ann-1]
 gi|170731283|ref|YP_001776716.1| protease IV [Xylella fastidiosa M12]
 gi|71164089|gb|EAO13804.1| Peptidase S49, SppA 67 kDa type:Peptidase S49, SppA [Xylella
           fastidiosa Dixon]
 gi|71730083|gb|EAO32173.1| Peptidase S49, SppA 67 kDa type:Peptidase S49, SppA [Xylella
           fastidiosa Ann-1]
 gi|167966076|gb|ACA13086.1| protease IV [Xylella fastidiosa M12]
          Length = 633

 Score = 41.4 bits (96), Expect = 0.097,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 68/179 (37%), Gaps = 32/179 (17%)

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYD---TMQFIKPPISTFCMGQAASMGSLLLS----- 120
           E+  K + L +NSPGG V A   I      ++ +  P+       AAS G  +       
Sbjct: 370 EDAVKAVVLRVNSPGGEVFASEQIRREVVALRKVGKPVVVSMGDMAASGGYWISMDADRI 429

Query: 121 -------AGEKGMRFALPNARILLHQPSGGFSG-------QASDI--ERHAQDIVKIKRR 164
                  +G  G+   +PN    L +      G        A DI      Q     +  
Sbjct: 430 YADPSTISGSIGIFGLVPNITRTLDKVGVHTDGVGTTRFAGALDITRALDPQVGQIFQNV 489

Query: 165 LNEIYVKNCGK-------TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           +++ Y     K       + +E++  + R  + S ++A + G+VD++   R  I + +K
Sbjct: 490 IDKGYADFTTKVAQARHRSVKEIDS-IARGRVWSGAQAKERGLVDELGGVREAITDAAK 547


>gi|71901706|ref|ZP_00683780.1| Peptidase S49, SppA 67 kDa type:Peptidase S49, SppA [Xylella
           fastidiosa Ann-1]
 gi|71728523|gb|EAO30680.1| Peptidase S49, SppA 67 kDa type:Peptidase S49, SppA [Xylella
           fastidiosa Ann-1]
          Length = 630

 Score = 41.4 bits (96), Expect = 0.097,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 68/179 (37%), Gaps = 32/179 (17%)

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYD---TMQFIKPPISTFCMGQAASMGSLLLS----- 120
           E+  K + L +NSPGG V A   I      ++ +  P+       AAS G  +       
Sbjct: 367 EDAVKAVVLRVNSPGGEVFASEQIRREVVALRKVGKPVVVSMGDMAASGGYWISMDADRI 426

Query: 121 -------AGEKGMRFALPNARILLHQPSGGFSG-------QASDI--ERHAQDIVKIKRR 164
                  +G  G+   +PN    L +      G        A DI      Q     +  
Sbjct: 427 YADPSTISGSIGIFGLVPNITRTLDKVGVHTDGVGTTRFAGALDITRALDPQVGQIFQNV 486

Query: 165 LNEIYVKNCGK-------TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           +++ Y     K       + +E++  + R  + S ++A + G+VD++   R  I + +K
Sbjct: 487 IDKGYADFTTKVAQARHRSVKEIDS-IARGRVWSGAQAKERGLVDELGGVREAITDAAK 544


>gi|323947947|gb|EGB43942.1| peptidase S49 [Escherichia coli H120]
          Length = 354

 Score = 41.0 bits (95), Expect = 0.097,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 95  NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 154

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 155 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 214

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   +R   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 215 PDDVRETLQSRMDATRRMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 272

Query: 207 S 207
           S
Sbjct: 273 S 273


>gi|110641352|ref|YP_669082.1| minor capsid protein C [Escherichia coli 536]
 gi|191173120|ref|ZP_03034653.1| minor capsid protein C [Escherichia coli F11]
 gi|110342944|gb|ABG69181.1| minor capsid protein C [Escherichia coli 536]
 gi|190906665|gb|EDV66271.1| minor capsid protein C [Escherichia coli F11]
          Length = 439

 Score = 41.0 bits (95), Expect = 0.097,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 108 NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 167

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 168 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 227

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   +R   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 228 PDDVRETLQSRMDATRRIFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 285

Query: 207 S 207
           S
Sbjct: 286 S 286


>gi|311747477|ref|ZP_07721262.1| serine protease, ClpP class [Algoriphagus sp. PR1]
 gi|311302671|gb|EAZ79206.2| serine protease, ClpP class [Algoriphagus sp. PR1]
          Length = 449

 Score = 41.0 bits (95), Expect = 0.099,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 51/141 (36%), Gaps = 21/141 (14%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I + +++ GG V     I   +   + PI  F    AAS G+L+  A +K   F  P + 
Sbjct: 61  ILIEMDTYGGAVNDADDIRTMLLESEIPIQVFINKDAASAGALISIACDKI--FMAPGSS 118

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI----- 189
           I       G  G A+             R +     +  G+   ++ + +  ++I     
Sbjct: 119 IGAATVVNGTDGAAA-----PDKYQSYMRSMMRSTAEAKGRDP-KIAEAMVDENIEVEGV 172

Query: 190 --------MSASEACDWGVVD 202
                    S SEA  +G  D
Sbjct: 173 SEKGSVVTFSVSEAIKYGFCD 193


>gi|217967716|ref|YP_002353222.1| protein of unknown function DUF114 [Dictyoglomus turgidum DSM 6724]
 gi|217336815|gb|ACK42608.1| protein of unknown function DUF114 [Dictyoglomus turgidum DSM 6724]
          Length = 280

 Score = 41.0 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 44/108 (40%), Gaps = 8/108 (7%)

Query: 25  QTNRGERSYDIYSRLLKERIVFVTG-----QIEDHMATLICAQLLFLEAENPQKEISLYI 79
           QT   +R   + + + ++  + + G      I    +  I   L  +        I L +
Sbjct: 34  QTLERKRGSRVITLIHRQETMNLFGIPIARYINIEDSEEI---LRAIRLTPEDMPIDLIL 90

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           ++PGG+V A   I   ++  K  ++ F    A S G+ +  A ++ + 
Sbjct: 91  HTPGGLVLAAEQIAHALKNHKGKVTVFVPHYAMSGGTFIALAADEIIM 138


>gi|15807090|ref|NP_295819.1| endopeptidase IV-like protein [Deinococcus radiodurans R1]
 gi|6459892|gb|AAF11646.1|AE002045_6 endopeptidase IV-related protein [Deinococcus radiodurans R1]
          Length = 556

 Score = 41.0 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 57/179 (31%), Gaps = 36/179 (20%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMG 115
           +  + A L   + +   K I +Y+NS GG   A   ++  +     P+       AAS G
Sbjct: 313 SDTVVAALKHAKEDKATKAIVVYVNSGGGSALASDLMWREIATSDKPVVVVMGEYAASGG 372

Query: 116 SLLLS-------------------------------AGEKGMRFALPNARILLHQPSGGF 144
             L +                                G K  R       ++        
Sbjct: 373 YYLATHADKIVASPYTLTGSIGVVSGKPVMQEFNGRQGLKPERVGRD-RALMYSPSRPYT 431

Query: 145 SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
             + + IE+   ++     R      +    + E V + + R  I S  +A + G+VD+
Sbjct: 432 DEERAHIEKGIGEVY---DRFTSRVAEGRDLSQERVNE-IGRGRIWSGYDALELGLVDE 486


>gi|300866223|ref|ZP_07110935.1| signal peptide peptidase A [Oscillatoria sp. PCC 6506]
 gi|300335742|emb|CBN56095.1| signal peptide peptidase A [Oscillatoria sp. PCC 6506]
          Length = 272

 Score = 41.0 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 71/196 (36%), Gaps = 34/196 (17%)

Query: 40  LKERI--VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97
            +++I  + + G I       +   L  +E E     + L I+SPGG V     IY  ++
Sbjct: 9   YRKQIARIEINGAIAQEARKRVLEALKTVE-ERKFPALLLRIDSPGGTVGDSQEIYSALK 67

Query: 98  FIKPPISTFCM--------GQAASMGSLLLSA------GEKGMRFALPNARILLHQPSGG 143
            ++  +             G    MG+  +        G  G+     N   LL +    
Sbjct: 68  RLQDQVKIVASFGNISASGGVYIGMGAPHIVTNPGTITGSIGVIIRGNNIEGLLEKVGVS 127

Query: 144 F----SGQASDIERHAQDIVKIKRRLNEIYVKNCGK------------TYEEVEKTLDRD 187
           F    SG   DI    +++ + ++ + +  + N  +              E V+   D  
Sbjct: 128 FKTIKSGPYKDILAFDRELTEPEKEILQDLIDNTYQQFVQTVAEARNIPIETVKTFAD-G 186

Query: 188 HIMSASEACDWGVVDK 203
            I S  +A + GVVD+
Sbjct: 187 RIFSGQQALELGVVDR 202


>gi|284990303|ref|YP_003408857.1| Rhodanese domain-containing protein [Geodermatophilus obscurus DSM
           43160]
 gi|284063548|gb|ADB74486.1| Rhodanese domain protein [Geodermatophilus obscurus DSM 43160]
          Length = 335

 Score = 41.0 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 2/38 (5%)

Query: 170 VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
             + G+  E++E   DR     A     +G VD V+  
Sbjct: 3   SFHLGQPIEQIEPDSDR--CFPAQGPLAYGFVDHVVSR 38


>gi|313677410|ref|YP_004055406.1| enoyl-CoA hydratase/isomerase [Marivirga tractuosa DSM 4126]
 gi|312944108|gb|ADR23298.1| Enoyl-CoA hydratase/isomerase [Marivirga tractuosa DSM 4126]
          Length = 261

 Score = 41.0 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 19/121 (15%)

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI 151
           +++ ++    P+     G A   G  L  A    MR A PNA+           GQ  ++
Sbjct: 90  VFEMIEKCHKPVLAAVNGFALGGGCELAMACH--MRIATPNAKF----------GQ-PEV 136

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
                      +RL ++  K  GK  E     +  D  + A EA   G+V+ +  ++ ++
Sbjct: 137 NLGIIPGYGGTQRLTQLIGK--GKALEL---MMTAD-FIGAEEAKSLGLVNHIAENQEEL 190

Query: 212 E 212
            
Sbjct: 191 M 191


>gi|299535443|ref|ZP_07048765.1| putative signal peptide peptidase sppA [Lysinibacillus fusiformis
           ZC1]
 gi|298729204|gb|EFI69757.1| putative signal peptide peptidase sppA [Lysinibacillus fusiformis
           ZC1]
          Length = 337

 Score = 41.0 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 69/175 (39%), Gaps = 33/175 (18%)

Query: 62  QLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP----PISTFCMGQAASMGSL 117
           QL  +  +   + + L +NSPGG V     IY  +  IK     PI       AAS G  
Sbjct: 93  QLDNILYDESIQGVVLSVNSPGGGVKESADIYKKLLKIKEERQIPIYVSMDSMAASGGYY 152

Query: 118 LLSAGEK--GMRFALPNARILLHQP--------------SGGFSGQASDI-----ERHAQ 156
           + +  +K    R  +  +  ++ Q                   SG+  D+     E  A+
Sbjct: 153 ISAPADKIFAHRDTITGSIGVIMQSINYQELAEKVGVKFETFKSGEHKDMLSPMREVTAE 212

Query: 157 DIVKIKRRLNEIYVKNC-------GKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           +   ++  +NE Y +           +  EV+K  D   I+  ++A + G++D++
Sbjct: 213 ERAMMQDMINETYEEFVDIVEQGRNMSEAEVKKVAD-GRILGGTKALEAGLIDEI 266


>gi|327252883|gb|EGE64537.1| signal peptide peptidase SppA, 67K type [Escherichia coli STEC_7v]
          Length = 618

 Score = 41.0 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 349 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 409 SGGYWISTPANYIVANPSTLTGSIGIFGVVTTVENSLDSIGVHTDGVSTSPLADVSITKA 468

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 469 LPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 524


>gi|28199904|ref|NP_780218.1| protease IV [Xylella fastidiosa Temecula1]
 gi|182682655|ref|YP_001830815.1| signal peptide peptidase SppA, 67K type [Xylella fastidiosa M23]
 gi|28058025|gb|AAO29867.1| protease IV [Xylella fastidiosa Temecula1]
 gi|182632765|gb|ACB93541.1| signal peptide peptidase SppA, 67K type [Xylella fastidiosa M23]
 gi|307578935|gb|ADN62904.1| signal peptide peptidase SppA, 67K type [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 633

 Score = 41.0 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 68/179 (37%), Gaps = 32/179 (17%)

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYD---TMQFIKPPISTFCMGQAASMGSLLLS----- 120
           E+  K + L +NSPGG V A   I      ++ +  P+       AAS G  +       
Sbjct: 370 EDAVKAVVLRVNSPGGEVFASEQIRREVVALRKVGKPVVVSMGDMAASGGYWISMDADRI 429

Query: 121 -------AGEKGMRFALPNARILLHQPSGGFSG-------QASDI--ERHAQDIVKIKRR 164
                  +G  G+   +PN    L +      G        A DI      Q     +  
Sbjct: 430 YADPSTISGSIGIFGLVPNITRTLDKVGVHTDGVGTTRFAGALDITRALDPQVGQIFQNV 489

Query: 165 LNEIYVKNCGK-------TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           +++ Y     K       + +E++  + R  + S ++A + G+VD++   R  I + +K
Sbjct: 490 IDKGYADFTTKVAQARHRSVKEIDS-IARGRVWSGAQAKERGLVDELGGVREAITDAAK 547


>gi|323968532|gb|EGB63938.1| signal peptide peptidase SppA [Escherichia coli M863]
          Length = 637

 Score = 41.0 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 353 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 412

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 413 SGGYWISTPANYIVANPSTLTGSIGIFGVVTTVENSLDSIGVHTDGVSTSPLADVSITKA 472

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 473 LPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 528


>gi|15602536|ref|NP_245608.1| hypothetical protein PM0671 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12720949|gb|AAK02755.1| SppA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 627

 Score = 41.0 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 69/198 (34%), Gaps = 36/198 (18%)

Query: 52  EDHMATLICAQLLFLEAENPQ-KEISLYINSPGGVVTAGMAIY---DTMQFIKPPISTFC 107
           E  +     A+LL    ++   K + L +NSPGG   A   I    D +Q +  P+    
Sbjct: 346 EHEVGGDTIARLLRQAHDDDNVKAVILRVNSPGGSAFASEIIRQEVDNLQALGKPVVVSM 405

Query: 108 MGQAASMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSG--------- 146
              AAS G  + S             G  G+    P     L +      G         
Sbjct: 406 GAMAASGGYWISSTADYIIADKNTITGSIGIFALFPTFEKTLKKVGISADGVSTSALSSS 465

Query: 147 --------QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
                   + SDI +   +I     +   +  +  G T EEV+K       +   EA   
Sbjct: 466 SRFSGLSSEMSDILQL--EIESGYDKFLSVVSRGRGMTVEEVDKVAQGKIWL-GEEAVKH 522

Query: 199 GVVDKVLMSRIDIEEKSK 216
            +VD++    + +E+ S+
Sbjct: 523 NLVDELGHFNLAVEKASE 540


>gi|268589452|ref|ZP_06123673.1| signal peptide peptidase SppA [Providencia rettgeri DSM 1131]
 gi|291315117|gb|EFE55570.1| signal peptide peptidase SppA [Providencia rettgeri DSM 1131]
          Length = 618

 Score = 41.0 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 63/192 (32%), Gaps = 37/192 (19%)

Query: 46  FVTGQIEDHMA--TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP-- 101
            + G     +A    I AQ+     ++  K I L +NSPGG V+A   I   +       
Sbjct: 340 IMDGPQTAGIAGGDTIAAQIRDARLDDNIKAIVLRVNSPGGSVSASDLIRSELASAHAAG 399

Query: 102 -PISTFCMGQAASMGSLLLSAGEKGMRFALPNARI--------------LLHQPSGGFSG 146
            P+     G AAS G  + +  +     A PN                  L        G
Sbjct: 400 KPVVVSMGGMAASGGYWVSTPAD--YIIASPNTLTGSIGIFGVINTFEKSLDSIGVYTDG 457

Query: 147 QAS----DIE----RHAQDIVKIKRRLNEIYVKNCG-------KTYEEVEKTLDRDHIMS 191
            ++    DI        Q    ++  +   Y    G       KT  E+++       + 
Sbjct: 458 VSTSPLADISLTKGISPQFADMMQITIENGYETFIGLVAKSRHKTPAEIDQIAQGRVWI- 516

Query: 192 ASEACDWGVVDK 203
             +A   G+VD+
Sbjct: 517 GQDALKNGLVDQ 528


>gi|217070634|gb|ACJ83677.1| unknown [Medicago truncatula]
          Length = 67

 Score = 41.0 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/42 (47%), Positives = 25/42 (59%)

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG 125
           G  T  +A+YD M++IKPPI T C+G A   GSL      KG
Sbjct: 26  GYETEALAVYDLMRYIKPPIFTLCVGNAWGRGSLTFGCWCKG 67


>gi|323963682|gb|EGB59198.1| peptidase S49 [Escherichia coli M863]
          Length = 439

 Score = 41.0 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 108 NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 167

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 168 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 227

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   ++   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 228 PDDVRETLQSRMDATRQMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 285

Query: 207 S 207
           S
Sbjct: 286 S 286


>gi|315252463|gb|EFU32431.1| putative signal peptide peptidase SppA [Escherichia coli MS 85-1]
          Length = 426

 Score = 41.0 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 95  NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 154

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 155 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 214

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   ++   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 215 PDDVRETLQSRMDATRQMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 272

Query: 207 S 207
           S
Sbjct: 273 S 273


>gi|195473425|ref|XP_002088994.1| GE18880 [Drosophila yakuba]
 gi|194175095|gb|EDW88706.1| GE18880 [Drosophila yakuba]
          Length = 287

 Score = 41.0 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 19/116 (16%)

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            +     P +    G + + G +L +A E   R  LPN  I +H     F          
Sbjct: 121 ALHLCGLPTAAAINGHSPAAGCVLATACE--YRVMLPNLFIGIHATRFSF---------- 168

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
                 I + +   Y        + VE+ L++  + S  EA D G+VD++  S+ +
Sbjct: 169 -----VISKWMMNSY--QSVLPRKIVERALNQGKLFSTQEALDVGLVDEIACSKEE 217


>gi|298372905|ref|ZP_06982895.1| signal peptide peptidase SppA, 67K type [Bacteroidetes oral taxon
           274 str. F0058]
 gi|298275809|gb|EFI17360.1| signal peptide peptidase SppA, 67K type [Bacteroidetes oral taxon
           274 str. F0058]
          Length = 582

 Score = 41.0 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 69/178 (38%), Gaps = 31/178 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP--PISTFCMGQAAS 113
           +  I  +L+ L  ++  K + L +NSPGG       I+  +  +K   P+       AAS
Sbjct: 324 SQKIVDELIDLADDDKIKAVVLRVNSPGGSAFGSEQIWQAVGKVKARKPVVVSMGDYAAS 383

Query: 114 MGSLLLS------------AGEKGMRFALPNARILLHQPSGGFS----GQASDI-----E 152
            G  +               G  G+    PN + L  +    F      + SD       
Sbjct: 384 GGYYISCIADRIFAEPTTLTGSIGIFGMFPNVKGLFDKIGLSFESVKTNKFSDFGATYRP 443

Query: 153 RHAQD---IVKIKRRLNEIYVKNC----GKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
             A++   + K   +  +++ K C    G + + ++K  +   I S S+A   G+VD+
Sbjct: 444 MAAEEKVLLQKYIEKGYDLFTKRCADGRGMSQDSIKKIAE-GRIYSGSDALQLGLVDE 500


>gi|323185917|gb|EFZ71274.1| minor capsid protein C [Escherichia coli 1357]
          Length = 419

 Score = 41.0 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 88  NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 147

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 148 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 207

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   ++   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 208 PDDVRETLQSRMDATRQMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 265

Query: 207 S 207
           S
Sbjct: 266 S 266


>gi|293413827|ref|ZP_06656476.1| capsid protein [Escherichia coli B185]
 gi|291433885|gb|EFF06858.1| capsid protein [Escherichia coli B185]
          Length = 439

 Score = 41.0 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 108 NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 167

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 168 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 227

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   ++   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 228 PDDVRETLQSRMDATRQMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 285

Query: 207 S 207
           S
Sbjct: 286 S 286


>gi|324116806|gb|EGC10720.1| peptidase S49 [Escherichia coli E1167]
          Length = 439

 Score = 41.0 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 108 NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIITRVRDIKPVWALANDMNCSA 167

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 168 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGVALEKQGVEITLIYSGSHKVDGNPYSHL 227

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   ++   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 228 PDDVRETLQSRMDATRQMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 285

Query: 207 S 207
           S
Sbjct: 286 S 286


>gi|324114286|gb|EGC08257.1| peptidase S49 [Escherichia fergusonii B253]
          Length = 439

 Score = 41.0 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 108 NGIIARLQQAASDPMVDGILLDMDTPGGMVAGVFDCADIIARVRDIKPVWALANDMNCSA 167

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 168 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 227

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   ++   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 228 PDDVRETLQSRMDATRQMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 285

Query: 207 S 207
           S
Sbjct: 286 S 286


>gi|193067665|ref|ZP_03048632.1| minor capsid protein C [Escherichia coli E110019]
 gi|192959077|gb|EDV89513.1| minor capsid protein C [Escherichia coli E110019]
          Length = 439

 Score = 41.0 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 108 NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 167

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 168 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 227

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   ++   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 228 PDDVRETLQSRMDATRQMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 285

Query: 207 S 207
           S
Sbjct: 286 S 286


>gi|221133366|ref|ZP_03559671.1| hypothetical protein GHTCC_00430 [Glaciecola sp. HTCC2999]
          Length = 305

 Score = 41.0 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 4/90 (4%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM 108
           G IE + A  +  +++  +  +  K I+L I+S GG     + +   ++     I    +
Sbjct: 139 GAIEINSANTLIRKIMNADNVDWDKPIALEIHSGGGSPQEAIIMASFIKQYN--IQIEVL 196

Query: 109 GQAASMGSLLLSAGEKGMRFALPNARILLH 138
           GQ  S  + LL A +   R+    A I  H
Sbjct: 197 GQCISACTRLLLASD--SRYIHSKAWIGFH 224


>gi|15801354|ref|NP_287371.1| putative capsid protein of prophage CP-933X [Escherichia coli
           O157:H7 EDL933]
 gi|15830887|ref|NP_309660.1| minor capsid protein [Escherichia coli O157:H7 str. Sakai]
 gi|15831430|ref|NP_310203.1| minor capsid protein precursor [Escherichia coli O157:H7 str.
           Sakai]
 gi|168749764|ref|ZP_02774786.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4113]
 gi|168752425|ref|ZP_02777447.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4113]
 gi|168756502|ref|ZP_02781509.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4401]
 gi|168758740|ref|ZP_02783747.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4401]
 gi|168762579|ref|ZP_02787586.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4501]
 gi|168764760|ref|ZP_02789767.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4501]
 gi|168771031|ref|ZP_02796038.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4486]
 gi|168771214|ref|ZP_02796221.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4486]
 gi|168776026|ref|ZP_02801033.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4196]
 gi|168777928|ref|ZP_02802935.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4196]
 gi|168778011|ref|ZP_02803018.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4196]
 gi|168778058|ref|ZP_02803065.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4196]
 gi|168782498|ref|ZP_02807505.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4076]
 gi|168784221|ref|ZP_02809228.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4076]
 gi|168784369|ref|ZP_02809376.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4076]
 gi|168787638|ref|ZP_02812645.1| minor capsid protein C [Escherichia coli O157:H7 str. EC869]
 gi|168790271|ref|ZP_02815278.1| minor capsid protein C [Escherichia coli O157:H7 str. EC869]
 gi|168800423|ref|ZP_02825430.1| minor capsid protein C [Escherichia coli O157:H7 str. EC508]
 gi|168802662|ref|ZP_02827669.1| minor capsid protein C [Escherichia coli O157:H7 str. EC508]
 gi|195938793|ref|ZP_03084175.1| putative minor capsid protein precursor [Escherichia coli O157:H7
           str. EC4024]
 gi|195939967|ref|ZP_03085349.1| putative minor capsid protein precursor [Escherichia coli O157:H7
           str. EC4024]
 gi|208807522|ref|ZP_03249859.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4206]
 gi|208810835|ref|ZP_03252668.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4206]
 gi|208814915|ref|ZP_03256094.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4045]
 gi|208816407|ref|ZP_03257586.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4045]
 gi|208821699|ref|ZP_03262019.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4042]
 gi|208822514|ref|ZP_03262833.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4042]
 gi|209398131|ref|YP_002270077.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4115]
 gi|209399799|ref|YP_002270223.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4115]
 gi|217328033|ref|ZP_03444115.1| minor capsid protein C [Escherichia coli O157:H7 str. TW14588]
 gi|217329770|ref|ZP_03445847.1| minor capsid protein C [Escherichia coli O157:H7 str. TW14588]
 gi|254792619|ref|YP_003077456.1| putative capsid protein of prophage CP-933X [Escherichia coli
           O157:H7 str. TW14359]
 gi|254792758|ref|YP_003077595.1| putative capsid protein of prophage CP-933X [Escherichia coli
           O157:H7 str. TW14359]
 gi|260855340|ref|YP_003229231.1| putative capsid protein/prohead protease [Escherichia coli O26:H11
           str. 11368]
 gi|261227262|ref|ZP_05941543.1| putative capsid protein of prophage CP-933X [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261258730|ref|ZP_05951263.1| putative capsid protein/prohead protease [Escherichia coli O157:H7
           str. FRIK966]
 gi|12514814|gb|AAG55983.1|AE005330_15 putative capsid protein of prophage CP-933X [Escherichia coli
           O157:H7 str. EDL933]
 gi|13361097|dbj|BAB35056.1| minor capsid protein [Escherichia coli O157:H7 str. Sakai]
 gi|13361642|dbj|BAB35599.1| putative minor capsid protein precursor [Escherichia coli O157:H7
           str. Sakai]
 gi|187766859|gb|EDU30703.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4196]
 gi|187766895|gb|EDU30739.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4196]
 gi|187766931|gb|EDU30775.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4196]
 gi|187768547|gb|EDU32391.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4196]
 gi|188013730|gb|EDU51852.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4113]
 gi|188016014|gb|EDU54136.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4113]
 gi|188998454|gb|EDU67454.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4076]
 gi|188998583|gb|EDU67569.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4076]
 gi|189000028|gb|EDU69014.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4076]
 gi|189354482|gb|EDU72901.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4401]
 gi|189356384|gb|EDU74803.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4401]
 gi|189359977|gb|EDU78396.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4486]
 gi|189360133|gb|EDU78552.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4486]
 gi|189365302|gb|EDU83718.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4501]
 gi|189367179|gb|EDU85595.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4501]
 gi|189370253|gb|EDU88669.1| minor capsid protein C [Escherichia coli O157:H7 str. EC869]
 gi|189372400|gb|EDU90816.1| minor capsid protein C [Escherichia coli O157:H7 str. EC869]
 gi|189375403|gb|EDU93819.1| minor capsid protein C [Escherichia coli O157:H7 str. EC508]
 gi|189377239|gb|EDU95655.1| minor capsid protein C [Escherichia coli O157:H7 str. EC508]
 gi|208724341|gb|EDZ74049.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4206]
 gi|208727323|gb|EDZ76924.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4206]
 gi|208731563|gb|EDZ80251.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4045]
 gi|208733055|gb|EDZ81743.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4045]
 gi|208737999|gb|EDZ85682.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4042]
 gi|208741822|gb|EDZ89504.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4042]
 gi|209159531|gb|ACI36964.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4115]
 gi|209161199|gb|ACI38632.1| minor capsid protein C [Escherichia coli O157:H7 str. EC4115]
 gi|217317189|gb|EEC25620.1| minor capsid protein C [Escherichia coli O157:H7 str. TW14588]
 gi|217318460|gb|EEC26886.1| minor capsid protein C [Escherichia coli O157:H7 str. TW14588]
 gi|254592019|gb|ACT71380.1| putative capsid protein of prophage CP-933X [Escherichia coli
           O157:H7 str. TW14359]
 gi|254592158|gb|ACT71519.1| putative capsid protein of prophage CP-933X [Escherichia coli
           O157:H7 str. TW14359]
 gi|257753989|dbj|BAI25491.1| putative capsid protein/prohead protease [Escherichia coli O26:H11
           str. 11368]
 gi|320187947|gb|EFW62615.1| Head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC1212]
 gi|320191964|gb|EFW66610.1| Head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           EC1212]
 gi|320638195|gb|EFX07937.1| putative capsid protein/prohead protease [Escherichia coli O157:H7
           str. G5101]
 gi|326338655|gb|EGD62480.1| Head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           1125]
 gi|326348089|gb|EGD71798.1| Head-tail preconnector protein GP5 [Escherichia coli O157:H7 str.
           1044]
          Length = 439

 Score = 41.0 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 108 NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 167

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 168 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 227

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   +R   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 228 PGDVRETLQSRMDATRRMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 285

Query: 207 S 207
           S
Sbjct: 286 S 286


>gi|324009542|gb|EGB78761.1| putative signal peptide peptidase SppA [Escherichia coli MS 57-2]
          Length = 430

 Score = 41.0 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 95  NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 154

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 155 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAVLEKQGVEITLIYSGSHKVDGNPYSHL 214

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   ++   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 215 PDDVRETLQSRMDATRQMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 272

Query: 207 S 207
           S
Sbjct: 273 S 273


>gi|332157800|ref|YP_004423079.1| protease IV [Pyrococcus sp. NA2]
 gi|331033263|gb|AEC51075.1| protease IV [Pyrococcus sp. NA2]
          Length = 329

 Score = 41.0 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 2/83 (2%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP-- 101
           I+ + G I++ +A  I  ++  + +      + L+I SPGG V     IY+ ++ +    
Sbjct: 87  ILPIFGPIDEELALKIIKRIREIRSNRTIGGVLLWIESPGGYVGPVREIYEELKKLSHLK 146

Query: 102 PISTFCMGQAASMGSLLLSAGEK 124
           PI  +  G A S    +  A +K
Sbjct: 147 PIVAYTGGYAYSGAYYIACAAQK 169


>gi|300951371|ref|ZP_07165213.1| signal peptide peptidase SppA [Escherichia coli MS 116-1]
 gi|300958660|ref|ZP_07170784.1| signal peptide peptidase SppA [Escherichia coli MS 175-1]
 gi|301647962|ref|ZP_07247737.1| signal peptide peptidase SppA [Escherichia coli MS 146-1]
 gi|331642370|ref|ZP_08343505.1| signal peptide peptidase SppA, 67K type [Escherichia coli H736]
 gi|300314711|gb|EFJ64495.1| signal peptide peptidase SppA [Escherichia coli MS 175-1]
 gi|300449361|gb|EFK12981.1| signal peptide peptidase SppA [Escherichia coli MS 116-1]
 gi|301073933|gb|EFK88739.1| signal peptide peptidase SppA [Escherichia coli MS 146-1]
 gi|331039168|gb|EGI11388.1| signal peptide peptidase SppA, 67K type [Escherichia coli H736]
          Length = 666

 Score = 41.0 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 397 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 456

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 457 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 516

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 517 LPPEAQLMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 572


>gi|309704860|emb|CBJ04212.1| putative minor capsid protein [Escherichia coli ETEC H10407]
          Length = 439

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 108 NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 167

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 168 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 227

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   +R   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 228 PGDVRETLQSRMDATRRMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 285

Query: 207 S 207
           S
Sbjct: 286 S 286


>gi|186972970|pdb|3BPP|A Chain A, 1510-N Membrane Protease K138a Mutant Specific For A
           Stomatin Homolog From Pyrococcus Horikoshii
          Length = 230

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 58/143 (40%), Gaps = 15/143 (10%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM---GQAASMGSLLLSAGEKGMRFALP 131
           I + +++PGG   A M I   +Q  K P+  +       AAS G+ +       +    P
Sbjct: 42  IIIELDTPGGRADAMMNIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSH--LIAMAP 99

Query: 132 NARILLHQPSGGFSGQASDIE----RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
              I   +P  G+S   S IE         I  IK        +  G+     E+ + +D
Sbjct: 100 GTSIGACRPILGYSQNGSIIEAPPAITNYFIAYIKS-----LAQESGRNATIAEEFITKD 154

Query: 188 HIMSASEACDWGVVDKVLMSRID 210
             ++  EA  +GV+ +V+   I+
Sbjct: 155 LSLTPEEALKYGVI-EVVARDIN 176


>gi|331647259|ref|ZP_08348353.1| signal peptide peptidase SppA, 67K type [Escherichia coli M605]
 gi|331044042|gb|EGI16178.1| signal peptide peptidase SppA, 67K type [Escherichia coli M605]
          Length = 622

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 59/179 (32%), Gaps = 35/179 (19%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 353 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 412

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIERHAQ 156
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 413 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 472

Query: 157 ---DIVKIKR-RLNEIY---------VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
              ++ ++ +  +   Y          ++   T E+++K        +  +A   G+VD
Sbjct: 473 LPPEVQQMMQLSIENGYKRFITLVADARHS--TPEQIDKIAQGHVW-TGQDAKANGLVD 528


>gi|307267146|ref|ZP_07548655.1| signal peptide peptidase SppA, 36K type [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|326390690|ref|ZP_08212244.1| signal peptide peptidase SppA, 36K type [Thermoanaerobacter
           ethanolicus JW 200]
 gi|306917831|gb|EFN48096.1| signal peptide peptidase SppA, 36K type [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|325993227|gb|EGD51665.1| signal peptide peptidase SppA, 36K type [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 304

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 59/182 (32%), Gaps = 32/182 (17%)

Query: 53  DHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK---PPISTFCMG 109
             +      Q+   + ++  K + + INSPGG     + IY  ++ +K     +      
Sbjct: 59  PQVTGDPVEQIRKAQEDSTVKAVVVKINSPGGSAAKSVEIYTELKRLKETGKKVIISMGD 118

Query: 110 QAASMGSLLLSAGEK------------GMRFALPNARILLHQ-----------PSGGFSG 146
            AAS G +    G+             G+     N   L  +           P      
Sbjct: 119 AAASGGYMAACGGDIIVANPATITGSIGVIMQYTNYEGLYDKLGLKEITIKSGPYKDMGS 178

Query: 147 QASDI-----ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
              D+     +     I     +  EI  +      ++V++  D   I +  +A   G+V
Sbjct: 179 PTRDLTPEEKKILQGVIDDTYEQFVEIVSEGRKMPIDKVKELAD-GRIFTGRQALKVGLV 237

Query: 202 DK 203
           DK
Sbjct: 238 DK 239


>gi|330911571|gb|EGH40081.1| protease 4 [Escherichia coli AA86]
          Length = 622

 Score = 40.6 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 59/179 (32%), Gaps = 35/179 (19%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 353 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 412

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIERHAQ 156
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 413 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 472

Query: 157 ---DIVKIKR-RLNEIY---------VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
              ++ ++ +  +   Y          ++   T E+++K        +  +A   G+VD
Sbjct: 473 LPPEVQQMMQLSIENGYKRFITLVADARHS--TPEQIDKIAQGHVW-TGQDAKANGLVD 528


>gi|281178836|dbj|BAI55166.1| protease IV [Escherichia coli SE15]
          Length = 618

 Score = 40.6 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 59/179 (32%), Gaps = 35/179 (19%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 349 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIERHAQ 156
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 409 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 468

Query: 157 ---DIVKIKR-RLNEIY---------VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
              ++ ++ +  +   Y          ++   T E+++K        +  +A   G+VD
Sbjct: 469 LPPEVQQMMQLSIENGYKRFITLVADARHS--TPEQIDKIAQGHVW-TGQDAKANGLVD 524


>gi|209919254|ref|YP_002293338.1| putative phage capsid structural protein [Escherichia coli SE11]
 gi|209912513|dbj|BAG77587.1| putative phage capsid structural protein [Escherichia coli SE11]
          Length = 439

 Score = 40.6 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 108 NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 167

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 168 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 227

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   +R   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 228 PGDVRETLQSRMDATRRMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 285

Query: 207 S 207
           S
Sbjct: 286 S 286


>gi|78044964|ref|YP_359707.1| nodulation efficiency family protein [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77997079|gb|ABB15978.1| nodulation efficiency family protein [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 430

 Score = 40.6 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 58/146 (39%), Gaps = 15/146 (10%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCM---GQAASMGSLLLSAGEKGMRFALPNA 133
           + +N+PGG+ T+   I   +   K P+  +      +AAS G+ +L      +    P  
Sbjct: 60  IELNTPGGLDTSMREITSAILAAKVPVGVWVGPSGARAASAGTFIL--YSAQVAAMAPQT 117

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT----YEEVEKTLDRDHI 189
            I    P     GQ+ D +  A+        +     K  G+      E V K++  D  
Sbjct: 118 TIGSAHPVNL-GGQSLDQDLRAKVENDAVSYITS-LAKRNGRNPVWAEEAVRKSVSVD-- 173

Query: 190 MSASEACDWGVVDKVLMSRIDIEEKS 215
             A EA   G+++ +  +  +  EK+
Sbjct: 174 --AEEAYKKGIINFIAKNPEEFLEKA 197


>gi|300897573|ref|ZP_07115983.1| putative signal peptide peptidase SppA [Escherichia coli MS 198-1]
 gi|300358676|gb|EFJ74546.1| putative signal peptide peptidase SppA [Escherichia coli MS 198-1]
          Length = 403

 Score = 40.6 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 95  NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 154

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 155 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 214

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   +R   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 215 PDDVRETLQSRMDATRRMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 272

Query: 207 S 207
           S
Sbjct: 273 S 273


>gi|194438574|ref|ZP_03070663.1| protease 4 [Escherichia coli 101-1]
 gi|194422584|gb|EDX38582.1| protease 4 [Escherichia coli 101-1]
 gi|323937024|gb|EGB33304.1| signal peptide peptidase SppA [Escherichia coli E1520]
 gi|323962014|gb|EGB57612.1| signal peptide peptidase SppA [Escherichia coli H489]
 gi|323972549|gb|EGB67753.1| signal peptide peptidase SppA [Escherichia coli TA007]
          Length = 622

 Score = 40.6 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 353 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 412

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 413 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 472

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 473 LPPEAQLMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 528


>gi|253773279|ref|YP_003036110.1| protease 4 [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254161824|ref|YP_003044932.1| protease 4 [Escherichia coli B str. REL606]
 gi|297519580|ref|ZP_06937966.1| protease 4 [Escherichia coli OP50]
 gi|242377487|emb|CAQ32240.1| protease IV, subunit of protease IV, a signal peptide peptidase
           [Escherichia coli BL21(DE3)]
 gi|253324323|gb|ACT28925.1| signal peptide peptidase SppA, 67K type [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973725|gb|ACT39396.1| protease IV (signal peptide peptidase) [Escherichia coli B str.
           REL606]
 gi|253977919|gb|ACT43589.1| protease IV (signal peptide peptidase) [Escherichia coli BL21(DE3)]
 gi|309701988|emb|CBJ01302.1| protease IV [Escherichia coli ETEC H10407]
          Length = 618

 Score = 40.6 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 349 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 409 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 468

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 469 LPPEAQLMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 524


>gi|85859094|ref|YP_461296.1| signal peptide peptidase [Syntrophus aciditrophicus SB]
 gi|85722185|gb|ABC77128.1| signal peptide peptidase [Syntrophus aciditrophicus SB]
          Length = 309

 Score = 40.6 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 64/162 (39%), Gaps = 25/162 (15%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ--FIKPPISTFCMGQAAS 113
           +T +   L     ++  K + L INSPGG V     IY+ +     K  +       AAS
Sbjct: 55  STDVVKNLQEFGKDDSVKGVVLRINSPGGGVAPSQEIYEAVMELRKKKRVLVSMSSVAAS 114

Query: 114 MGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC 173
            G L+  AGEK     + N   L    S            +A+++  +K+   +      
Sbjct: 115 GGYLIACAGEK----IIANPGTLTGSVSAIMYFT------NAEEL--MKKVGVKASTIKS 162

Query: 174 GKTYEEVEKTLD---RDHIMSASE-ACDWGVVDKVLMSRIDI 211
           GK      K +    R+  M+  E A   G+VD + +  +D+
Sbjct: 163 GK-----YKDIGSPIRE--MTGEEKALLQGLVDDIYIQFLDV 197


>gi|301020953|ref|ZP_07185005.1| signal peptide peptidase SppA [Escherichia coli MS 196-1]
 gi|299881708|gb|EFI89919.1| signal peptide peptidase SppA [Escherichia coli MS 196-1]
          Length = 622

 Score = 40.6 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 353 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 412

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 413 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 472

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 473 LPPEAQLMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 528


>gi|260854308|ref|YP_003228199.1| putative minor capsid protein [Escherichia coli O26:H11 str. 11368]
 gi|260855084|ref|YP_003228975.1| putative head protein/prohead protease [Escherichia coli O26:H11
           str. 11368]
 gi|260855722|ref|YP_003229613.1| putative head protein/prohead protease [Escherichia coli O26:H11
           str. 11368]
 gi|257752957|dbj|BAI24459.1| putative minor capsid protein [Escherichia coli O26:H11 str. 11368]
 gi|257753733|dbj|BAI25235.1| putative head protein/prohead protease [Escherichia coli O26:H11
           str. 11368]
 gi|257754371|dbj|BAI25873.1| putative head protein/prohead protease [Escherichia coli O26:H11
           str. 11368]
          Length = 439

 Score = 40.6 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 108 NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 167

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 168 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 227

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   +R   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 228 PGDVRETLQSRMDATRRMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 285

Query: 207 S 207
           S
Sbjct: 286 S 286


>gi|209917788|ref|YP_002291872.1| putative phage minor capsid protein [Escherichia coli SE11]
 gi|209911047|dbj|BAG76121.1| putative phage minor capsid protein [Escherichia coli SE11]
 gi|320201852|gb|EFW76428.1| Head-tail preconnector protein GP5 [Escherichia coli EC4100B]
 gi|323965007|gb|EGB60470.1| peptidase S49 [Escherichia coli M863]
          Length = 439

 Score = 40.6 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 108 NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 167

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 168 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 227

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   +R   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 228 PGDVRETLQSRMDATRRMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 285

Query: 207 S 207
           S
Sbjct: 286 S 286


>gi|16129720|ref|NP_416280.1| protease IV (signal peptide peptidase) [Escherichia coli str. K-12
           substr. MG1655]
 gi|89108605|ref|AP_002385.1| protease IV [Escherichia coli str. K-12 substr. W3110]
 gi|170081423|ref|YP_001730743.1| protease IV (signal peptide peptidase) [Escherichia coli str. K-12
           substr. DH10B]
 gi|238900980|ref|YP_002926776.1| protease IV (signal peptide peptidase) [Escherichia coli BW2952]
 gi|256022570|ref|ZP_05436435.1| protease 4 [Escherichia sp. 4_1_40B]
 gi|307138425|ref|ZP_07497781.1| protease 4 [Escherichia coli H736]
 gi|34395936|sp|P08395|SPPA_ECOLI RecName: Full=Protease 4; AltName: Full=Endopeptidase IV; AltName:
           Full=Protease IV; AltName: Full=Signal peptide peptidase
 gi|1742877|dbj|BAA15557.1| protease IV [Escherichia coli str. K12 substr. W3110]
 gi|1788064|gb|AAC74836.1| protease IV (signal peptide peptidase) [Escherichia coli str. K-12
           substr. MG1655]
 gi|169889258|gb|ACB02965.1| protease IV (signal peptide peptidase) [Escherichia coli str. K-12
           substr. DH10B]
 gi|238863289|gb|ACR65287.1| protease IV (signal peptide peptidase) [Escherichia coli BW2952]
 gi|260449112|gb|ACX39534.1| signal peptide peptidase SppA, 67K type [Escherichia coli DH1]
 gi|315136407|dbj|BAJ43566.1| protease 4 [Escherichia coli DH1]
 gi|323940567|gb|EGB36758.1| signal peptide peptidase SppA [Escherichia coli E482]
          Length = 618

 Score = 40.6 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 349 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 409 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 468

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 469 LPPEAQLMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 524


>gi|325497825|gb|EGC95684.1| capsid protein [Escherichia fergusonii ECD227]
          Length = 439

 Score = 40.6 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 108 NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 167

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 168 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 227

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   ++   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 228 PDDVRETLQSRMDATRQMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 285

Query: 207 S 207
           S
Sbjct: 286 S 286


>gi|312969556|ref|ZP_07783739.1| minor capsid C [Escherichia coli 1827-70]
 gi|310337841|gb|EFQ02930.1| minor capsid C [Escherichia coli 1827-70]
          Length = 439

 Score = 40.6 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 108 NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 167

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 168 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 227

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   ++   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 228 PDDVRETLQSRMDATRQMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 285

Query: 207 S 207
           S
Sbjct: 286 S 286


>gi|307310890|ref|ZP_07590536.1| peptidase S49 [Escherichia coli W]
 gi|306909068|gb|EFN39564.1| peptidase S49 [Escherichia coli W]
 gi|315060844|gb|ADT75171.1| peptidase S49 [Escherichia coli W]
 gi|323378587|gb|ADX50855.1| peptidase S49 [Escherichia coli KO11]
          Length = 439

 Score = 40.6 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 108 NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 167

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 168 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 227

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   ++   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 228 PDDVRETLQSRMDATRQMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 285

Query: 207 S 207
           S
Sbjct: 286 S 286


>gi|295398025|ref|ZP_06808081.1| U7 family peptidase [Aerococcus viridans ATCC 11563]
 gi|294973783|gb|EFG49554.1| U7 family peptidase [Aerococcus viridans ATCC 11563]
          Length = 362

 Score = 40.6 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 61/161 (37%), Gaps = 35/161 (21%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKP----PISTFCMGQAASMGSLLLSAGEKGMR----- 127
           L +NSPGG V     +Y+ +  +K     PI       AAS G ++   G++        
Sbjct: 124 LTVNSPGGGVYESTELYNALLDLKESREIPIYVSMGQMAASGGYMISMVGDQIYTDSETT 183

Query: 128 ---------------FALPNARIL-------LHQPSGGFSGQASDIERHA--QDIVKIKR 163
                          F   +   +       L      F G ASD E++     I +   
Sbjct: 184 TGSIGVIMQVPNFSGFMEEHGLAMDTYKSGALKDMGSSFRG-ASDEEKNVLNSFIQEKYN 242

Query: 164 RLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           R  EI     G + ++V+K  D   I S S+A + G+ D++
Sbjct: 243 RFVEIVANGRGMSTDDVKKLAD-GRIYSGSQAVENGLADQI 282


>gi|306813973|ref|ZP_07448146.1| Minor capsid protein C from bacteriophage origin [Escherichia coli
           NC101]
 gi|222032926|emb|CAP75666.1| capsid protein of prophage [Escherichia coli LF82]
 gi|305852610|gb|EFM53058.1| Minor capsid protein C from bacteriophage origin [Escherichia coli
           NC101]
 gi|312945741|gb|ADR26568.1| Minor capsid protein C from bacteriophage origin [Escherichia coli
           O83:H1 str. NRG 857C]
          Length = 443

 Score = 40.6 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 108 NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 167

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 168 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAVLEKQGVEITLIYSGSHKVDGNPYSHL 227

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   ++   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 228 PDDVRETLQSRMDATRQMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 285

Query: 207 S 207
           S
Sbjct: 286 S 286


>gi|116749395|ref|YP_846082.1| signal peptide peptidase SppA, 36K type [Syntrophobacter
           fumaroxidans MPOB]
 gi|116698459|gb|ABK17647.1| signal peptide peptidase A. Serine peptidase. MEROPS family S49
           [Syntrophobacter fumaroxidans MPOB]
          Length = 329

 Score = 40.6 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 65/186 (34%), Gaps = 33/186 (17%)

Query: 51  IEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK----PPISTF 106
            +  M   I +QL   E +   K + L ++S GG V+A   +Y  +   K      +   
Sbjct: 68  QKPAMVQEIVSQLKKAEKDKTVKAVLLKVDSSGGSVSASDILYHEIMEFKRRSGAKLVAV 127

Query: 107 CMGQAASMGSLLLSA------------GEKGMRFALPNARILLHQPSGGF----SGQASD 150
            MG AAS G  +               G  G+ F  P    L+ +         SG+  D
Sbjct: 128 LMGTAASGGYYIALPADSIVAHPSTITGSVGVIFIRPKVTGLMDKIGLEVEVDKSGRNKD 187

Query: 151 I------------ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
           +            +     I ++ R+  ++ V +       +         + A EA   
Sbjct: 188 MGSPFRKTTAEEQQILQHLIDELARKFIDLTVAHRRLEPAALADVSTARVYL-AEEALRL 246

Query: 199 GVVDKV 204
           G+VDKV
Sbjct: 247 GLVDKV 252


>gi|163311063|pdb|3BF0|A Chain A, Crystal Structure Of Escherichia Coli Signal Peptide
           Peptidase (Sppa), Native Crystals
 gi|163311064|pdb|3BF0|B Chain B, Crystal Structure Of Escherichia Coli Signal Peptide
           Peptidase (Sppa), Native Crystals
 gi|163311065|pdb|3BF0|C Chain C, Crystal Structure Of Escherichia Coli Signal Peptide
           Peptidase (Sppa), Native Crystals
 gi|163311066|pdb|3BF0|D Chain D, Crystal Structure Of Escherichia Coli Signal Peptide
           Peptidase (Sppa), Native Crystals
          Length = 593

 Score = 40.6 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 324 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 383

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 384 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 443

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 444 LPPEAQLMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 499


>gi|89068952|ref|ZP_01156334.1| hypothetical protein OG2516_01721 [Oceanicola granulosus HTCC2516]
 gi|89045533|gb|EAR51597.1| hypothetical protein OG2516_01721 [Oceanicola granulosus HTCC2516]
          Length = 272

 Score = 40.6 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 50/126 (39%), Gaps = 13/126 (10%)

Query: 23  VEQTNRGERSY----DIYSRLLKERIVFVTGQIEDHMATLICA-----QLLFLEAENPQK 73
             +   G R      D+ SRLL E      G+    +A  I A        +L+AE    
Sbjct: 77  PREAPPGSRPMPASEDMPSRLLFE-STRWEGRPTLTVAGQIEAGDAERFAEYLDAERTPP 135

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
           E+ +Y+NSPGG V   +AI   ++ +             S    +L+ G   +R     A
Sbjct: 136 EL-VYLNSPGGSVVDALAIGRALRDLGAETRMTEADICLSACPYMLAGGA--VRAVEDGA 192

Query: 134 RILLHQ 139
            + +HQ
Sbjct: 193 MVGVHQ 198


>gi|195953570|ref|YP_002121860.1| signal peptide peptidase SppA, 36K type [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195933182|gb|ACG57882.1| signal peptide peptidase SppA, 36K type [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 282

 Score = 40.6 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 62/181 (34%), Gaps = 38/181 (20%)

Query: 59  ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM---QFIKPPISTFCMGQAASMG 115
           I  Q+   + +   K + L ++SPGG V A   IY  +   +  K PI       AAS G
Sbjct: 44  IEKQIEKAQKDPNIKALVLRVDSPGGAVGAAQEIYRALEIFRAHKKPIVVSMGSLAASGG 103

Query: 116 SLLLSAGEKGMRFALPNARILLHQPSGGF------------------SGQASDIERHAQD 157
             + +       +A P            +                  +GQ  DI    + 
Sbjct: 104 YYISAPA--NYIYANPGTLTASIGVIIDYLNYKDLLKKIGVEQGDIKTGQYKDILVPWKK 161

Query: 158 IVKIKRR-------------LNEIYVKNCGK-TYEEVEKTLDRDHIMSASEACDWGVVDK 203
           + K  +              +N I      K + +E+    D   +++  +A + G+VD 
Sbjct: 162 LSKDDKAYLQYLIDNTYEQFINAILAYRSNKISKQELLSIAD-GRVLTGVQAKEVGLVDG 220

Query: 204 V 204
           +
Sbjct: 221 I 221


>gi|325478882|gb|EGC81992.1| signal peptide peptidase SppA, 36K type [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 327

 Score = 40.6 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 72/196 (36%), Gaps = 33/196 (16%)

Query: 41  KERIVFVTGQIEDHMATLI-CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           K +IV V G I+ + A      +L   + +   K + L +NSPGG V A   I + ++ +
Sbjct: 62  KIKIVDVDGVIQSNDANDFAVEELKKAKEDPLVKGVILRVNSPGGSVYASEKIANQIKAL 121

Query: 100 K---PPISTFCMGQAASMGSLLLSA------------GEKGMRFALPNARILLHQPSGGF 144
           K    P+ T     AAS G  + +             G  G+     + + L  +     
Sbjct: 122 KEADKPVYTVMEEMAASGGYYISAPTDRIYASNETWTGSIGVIIQSKSLQGLFEKYGIKE 181

Query: 145 SGQASDIERHAQDIVKIK----------------RRLNEIYVKNCGKTYEEVEKTLDRDH 188
               +   + A  + +                   R  +I  +  G +  EV K  D   
Sbjct: 182 QNITTGKMKDAGSVGRDMNDDEKAYFQGLVDSAFDRFVKIVAEGRGLSEREVRKIADGRV 241

Query: 189 IMSASEACDWGVVDKV 204
               S+A + G+VDK+
Sbjct: 242 Y-DGSQALNIGLVDKI 256


>gi|327253537|gb|EGE65170.1| minor capsid protein C domain protein [Escherichia coli STEC_7v]
          Length = 315

 Score = 40.6 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 108 NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 167

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 168 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 227

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   ++   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 228 PDDVRETLQSRMDATRQMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 285

Query: 207 S 207
           S
Sbjct: 286 S 286


>gi|251771980|gb|EES52552.1| protein of unknown function DUF114 [Leptospirillum
           ferrodiazotrophum]
          Length = 272

 Score = 40.6 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 3/104 (2%)

Query: 25  QTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF-LEAENPQKEISLYINSPG 83
           + +RG R+  +  R  +E +  +   I  ++      ++L  ++  +P   I L ++SPG
Sbjct: 37  ERSRGSRAIALVHR--QETMNLLGFPILRYINVEDSEEILRAIKLTDPNTPIDLIVHSPG 94

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           G+V A M I   +   K P++ F    A S G+L+  A  + + 
Sbjct: 95  GLVLAAMQIAHALANRKAPVTVFVPHFAMSGGTLIALAASQIVM 138


>gi|15668307|ref|NP_247103.1| hypothetical protein MJ_0137 [Methanocaldococcus jannaschii DSM
           2661]
 gi|2495823|sp|Q57601|Y137_METJA RecName: Full=Uncharacterized protein MJ0137
 gi|1592268|gb|AAB98120.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 286

 Score = 40.6 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 59/164 (35%), Gaps = 24/164 (14%)

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           L  + A    K I L I++PGG+V A   I   ++             A S G+L+  A 
Sbjct: 85  LRAIRAAPKDKPIDLIIHTPGGLVLAATQIAKALKAHPAETRVIVPHYAMSGGTLIALAA 144

Query: 123 EKGMR---------------FALPNARILLHQPSGGFSGQASDI--ERHAQDIVKIKRRL 165
           +K +                +  P+    + Q     +   + I  +   + I +++  +
Sbjct: 145 DKIIMDENAVLGPVDPQLGQYPAPSIVKAVEQKGADKADDQTLILADIAKKAINQVQNFV 204

Query: 166 NEIYVKNCGKTYEE-VEKTLDRDHI-----MSASEACDWGV-VD 202
             +     G+   + + K L          ++  EA + G+ VD
Sbjct: 205 YNLLKDKYGEEKAKELSKILTEGRWTHDYPITVEEAKELGLDVD 248


>gi|194761580|ref|XP_001963007.1| GF15726 [Drosophila ananassae]
 gi|190616704|gb|EDV32228.1| GF15726 [Drosophila ananassae]
          Length = 260

 Score = 40.6 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 61/165 (36%), Gaps = 27/165 (16%)

Query: 51  IEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQ 110
           +    + +  A L  LE  N  KE        G + T    ++  +     P +    G 
Sbjct: 54  LTSANSNVFSAGLDILEMYNADKEQL------GTLWTELQNVWIALYGSGLPTAAAINGH 107

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK-IKRRLNEIY 169
           A + G LL +A E   R  LPN  I L++   G            + ++   +  L +  
Sbjct: 108 APAGGCLLATACE--YRAMLPNCVIGLNETQLGI--------IAPKWLMSGYQNILPQRL 157

Query: 170 VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
            +            L +  + +  EA   G++D+++ S+ +  EK
Sbjct: 158 AER----------ALTQGRLFTTEEALKAGLIDEIVNSKEEALEK 192


>gi|320660180|gb|EFX27694.1| putative phage minor capsid protein [Escherichia coli O55:H7 str.
           USDA 5905]
          Length = 439

 Score = 40.6 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 108 NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 167

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 168 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 227

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   +R   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 228 PGDVRETLQSRMDATRRIFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 285

Query: 207 S 207
           S
Sbjct: 286 S 286


>gi|218128954|ref|ZP_03457758.1| hypothetical protein BACEGG_00527 [Bacteroides eggerthii DSM 20697]
 gi|217988917|gb|EEC55234.1| hypothetical protein BACEGG_00527 [Bacteroides eggerthii DSM 20697]
          Length = 588

 Score = 40.6 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 68/178 (38%), Gaps = 31/178 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP--PISTFCMGQAAS 113
           +  +   L  L+ +   K + L +NSPGG       I+  ++ +K   P+       AAS
Sbjct: 329 SEKVIRDLRKLKDDENVKAVVLRVNSPGGSAYGSEQIWYAVEQLKKEKPVIVSMGDYAAS 388

Query: 114 MGSLLLSA------------GEKGMRFALPNARILLHQPSGGF----SGQASDIERHAQD 157
            G  +               G  G+   +PNA+ L  +    F    +   +D     + 
Sbjct: 389 GGYYIACNADTIVAEPTTLTGSIGIFGMMPNAKGLTEKLGLNFDVVKTNPYADFGNLTRP 448

Query: 158 IVKIKRRLNEIYVKN------C------GKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
           +   ++ L ++YV N             G + EE++K        + S A + G+VD+
Sbjct: 449 MNDGEKGLMQMYVNNGYKLFLTRCSDGRGISMEELDKIAQGRVW-TGSTAKELGLVDE 505


>gi|255348869|ref|ZP_05380876.1| exported protease IV [Chlamydia trachomatis 70]
 gi|255503409|ref|ZP_05381799.1| exported protease IV [Chlamydia trachomatis 70s]
 gi|255507087|ref|ZP_05382726.1| exported protease IV [Chlamydia trachomatis D(s)2923]
 gi|289525538|emb|CBJ15016.1| exported protease IV [Chlamydia trachomatis Sweden2]
 gi|296435097|gb|ADH17275.1| exported protease IV [Chlamydia trachomatis E/150]
 gi|296438818|gb|ADH20971.1| exported protease IV [Chlamydia trachomatis E/11023]
          Length = 331

 Score = 40.6 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 60/168 (35%), Gaps = 39/168 (23%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKP----PISTFCMGQAASMGSLLLSAGEK-GMR 127
           K I + I+ PGG V     +  T+ F K     P+  F  G  AS G  +    +K G  
Sbjct: 101 KGILVKIDCPGGEVFEIDRMCATLSFWKKQWGIPVHVFVSGLCASGGYYVACIADKIGTT 160

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKI-----KRRLN-------EIYVKNCG- 174
            +     I +   SG +      ++RH  +   +     K  LN       E Y +  G 
Sbjct: 161 SSSLIGSIGVR--SGPYFNVKEGLQRHGVETAILTAGDDKAPLNPFSSWTEEEYAERQGI 218

Query: 175 ------------------KTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
                              + E++ K L    +  A +A + G+VD +
Sbjct: 219 VDAFYEQFVDHVVKYRSKLSKEKLTKVLGA-RVFIAKQALEEGLVDAI 265


>gi|166154708|ref|YP_001654826.1| exported protease IV [Chlamydia trachomatis 434/Bu]
 gi|166155583|ref|YP_001653838.1| exported protease IV [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335981|ref|ZP_07224225.1| exported protease IV [Chlamydia trachomatis L2tet1]
 gi|165930696|emb|CAP04193.1| exported protease IV [Chlamydia trachomatis 434/Bu]
 gi|165931571|emb|CAP07147.1| exported protease IV [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 331

 Score = 40.6 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 60/168 (35%), Gaps = 39/168 (23%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKP----PISTFCMGQAASMGSLLLSAGEK-GMR 127
           K I + I+ PGG V     +  T+ F K     P+  F  G  AS G  +    +K G  
Sbjct: 101 KGILVKIDCPGGEVFEIDRMCATLSFWKKQWGIPVHVFVSGLCASGGYYVACIADKIGTT 160

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKI-----KRRLN-------EIYVKNCG- 174
            +     I +   SG +      ++RH  +   +     K  LN       E Y +  G 
Sbjct: 161 SSSLIGSIGVR--SGPYFNVKEGLQRHGVETAILTAGDDKAPLNPFSSWTEEEYAERQGI 218

Query: 175 ------------------KTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
                              + E++ K L    +  A +A + G+VD +
Sbjct: 219 VDAFYEQFVDHVVKYRSKLSKEKLTKVLGA-RVFIAKQALEEGLVDAI 265


>gi|16331410|ref|NP_442138.1| protease IV [Synechocystis sp. PCC 6803]
 gi|2499885|sp|Q55682|Y021_SYNY3 RecName: Full=Putative protease slr0021
 gi|1001581|dbj|BAA10208.1| protease IV [Synechocystis sp. PCC 6803]
          Length = 277

 Score = 40.6 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 58/157 (36%), Gaps = 31/157 (19%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPIST--------------FCMGQAASMGSLLLSAG 122
           + I+SPGG V     IY  ++ +   I                  MG    M +     G
Sbjct: 47  VRIDSPGGTVVDSQEIYTKLKQLSEKIKVVASFGNISASGGVYIAMGCPHIMANSGTITG 106

Query: 123 EKGMRFALPNARILLHQPSGGF----SGQASDIERHAQDIVKIKRRLNEIYVKNC-GK-- 175
             G+     N   LL +    F    SG   DI    ++++  ++ + +  + +  G+  
Sbjct: 107 SIGVILRGNNLERLLEKVGVSFKVIKSGPYKDILSFDRELLPEEQSILQALIDDSYGQFV 166

Query: 176 ---------TYEEVEKTLDRDHIMSASEACDWGVVDK 203
                      E+V++  D   I +  +A + G+VD+
Sbjct: 167 STVAAGRNLAVEKVKEFAD-GRIFTGQQALELGLVDR 202


>gi|302382322|ref|YP_003818145.1| peptidase S14 ClpP [Brevundimonas subvibrioides ATCC 15264]
 gi|302192950|gb|ADL00522.1| peptidase S14 ClpP [Brevundimonas subvibrioides ATCC 15264]
          Length = 190

 Score = 40.6 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 69/188 (36%), Gaps = 19/188 (10%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           D+ +R      + + G ++  M     AQ   L+       I + +++ GG       + 
Sbjct: 6   DLTARDFARPAILLGGDVDYAMYWNFRAQ---LDQAPATGLIVVELSTLGGDPEVARMMG 62

Query: 94  DTMQFIK-----PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ--------- 139
           + ++F                   S G+ L+S      R+     R+++H+         
Sbjct: 63  EDIRFQSDMNQERRFVFLGKAIVYSAGATLMSFFAPENRYLTRGTRLMIHERKMDKILDI 122

Query: 140 --PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
             P        + +    +  ++I+R   +  +     + EE+E+    +  + A+EA +
Sbjct: 123 KGPLTSCVATVTAMLHELEHSIQIQREGFQNLIVGSSVSLEELERRAPANWYIEAAEAVE 182

Query: 198 WGVVDKVL 205
            G+V  V+
Sbjct: 183 LGLVTAVI 190


>gi|198245686|ref|YP_002215831.1| protease 4 [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|197940202|gb|ACH77535.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|326623578|gb|EGE29923.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 618

 Score = 40.6 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 55/177 (31%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI---KPPISTFCMGQAA 112
                +Q+     +   K I L INSPGG V A   I   +        P+     G AA
Sbjct: 349 GDTTASQIRDARLDPKVKAIVLRINSPGGSVNASEVIRAELAAARAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DI----- 151
           S G  + +             G  G+   +      L        G ++    DI     
Sbjct: 409 SGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLSSIGVHSDGVSTSPLADISMTKA 468

Query: 152 ------ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
                 +     I    +R   +      +T E+++K        +  +A   G+VD
Sbjct: 469 LSPEVQQMMQLSIEYGYKRFITLVADARKRTPEQIDKIAQGHVW-TGEDAKANGLVD 524


>gi|78044452|ref|YP_361259.1| hypothetical protein CHY_2465 [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996567|gb|ABB15466.1| conserved hypothetical protein [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 280

 Score = 40.6 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 74/200 (37%), Gaps = 33/200 (16%)

Query: 30  ERSYDIYSRLLKERIV-FVTGQIEDHMATLICAQLLF-LEAENPQKEISLYINSPGGVVT 87
           +R   + + + ++    F+   +  ++      Q+L  +        I L +++PGG+V 
Sbjct: 44  KRKSRLITMIHRQETFSFLGLPVSRYINIEDSEQILRAIRLTPDDMPIDLVLHTPGGLVL 103

Query: 88  AGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR----FALPNARILLHQPSGG 143
           A   I + ++     ++ F    A S G+L+  A ++ +      A P    L   P+  
Sbjct: 104 AAEQIAEALRKHPAKVTVFIPHYAMSGGTLIALAADEIVMDENAVAGPVDPQLGEYPAAS 163

Query: 144 FSGQA---------------SDIERHAQDIVKIKRRLNEIYVKNCGKTYEE---VEKTLD 185
                               +DI + A  + +++  + E+         E+   V K L 
Sbjct: 164 ILKVVEQKGPDKVEDRTLIMADIAKKA--LAQVENTVVELLSDK--MDLEKAREVAKLLS 219

Query: 186 RDHI-----MSASEACDWGV 200
           +        +SA +  + G+
Sbjct: 220 QGTWTHDYPISAQQLKELGL 239


>gi|33861736|ref|NP_893297.1| signal peptide peptidase SppA (protease IV) [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
 gi|33640104|emb|CAE19639.1| signal peptide peptidase SppA (protease IV) [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
          Length = 269

 Score = 40.6 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 77/205 (37%), Gaps = 35/205 (17%)

Query: 33  YDIYSRLLKERI--VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGM 90
              + R  K+R+  + +   I       +   L  +E       I L I+SPGG V    
Sbjct: 2   IWPFRRKSKKRMARIVIDEPITSSTRVSVLKALKQIEDREFPALI-LRIDSPGGTVGDSQ 60

Query: 91  AIYDTMQFIK---PPISTFCMGQAASMGSLL------------LSAGEKGMRFALPNARI 135
            IY  ++ +K     +       +AS G  +               G  G+     N   
Sbjct: 61  EIYSAIKRLKEKGCKVVASFGNISASGGVYIGVASDKIVANPGTITGSIGVIIRGNNLSE 120

Query: 136 LLHQPSGGF----SGQASDIERHAQDIVK-----IKRRLNEIYVKNC-----GKTY--EE 179
           LL++    F    SG   DI    + + K     ++  +NE Y +       G+    ++
Sbjct: 121 LLNKIGIKFETVKSGIYKDILSPDKPLSKEGRELLQGLINESYKQFTEAVSEGRNLLVDD 180

Query: 180 VEKTLDRDHIMSASEACDWGVVDKV 204
           V+K  D   I + ++A D G+VDK+
Sbjct: 181 VKKFAD-GRIFTGTQAKDLGLVDKI 204


>gi|317477481|ref|ZP_07936707.1| signal peptide peptidase SppA [Bacteroides eggerthii 1_2_48FAA]
 gi|316906345|gb|EFV28073.1| signal peptide peptidase SppA [Bacteroides eggerthii 1_2_48FAA]
          Length = 588

 Score = 40.6 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 68/178 (38%), Gaps = 31/178 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP--PISTFCMGQAAS 113
           +  +   L  L+ +   K + L +NSPGG       I+  ++ +K   P+       AAS
Sbjct: 329 SEKVIRDLRKLKDDENVKAVVLRVNSPGGSAYGSEQIWYAVEQLKKEKPVIVSMGDYAAS 388

Query: 114 MGSLLLSA------------GEKGMRFALPNARILLHQPSGGF----SGQASDIERHAQD 157
            G  +               G  G+   +PNA+ L  +    F    +   +D     + 
Sbjct: 389 GGYYIACNADTIVAEPTTLTGSIGIFGMMPNAKGLTEKLGLNFDIVKTNPYADFGNLTRP 448

Query: 158 IVKIKRRLNEIYVKN------C------GKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
           +   ++ L ++YV N             G + EE++K        + S A + G+VD+
Sbjct: 449 MNDGEKGLMQMYVNNGYKLFLTRCSDGRGISMEELDKIAQGRVW-TGSTAKELGLVDE 505


>gi|167552353|ref|ZP_02346106.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205322985|gb|EDZ10824.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 618

 Score = 40.6 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 55/177 (31%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI---KPPISTFCMGQAA 112
                +Q+     +   K I L INSPGG V A   I   +        P+     G AA
Sbjct: 349 GDTTASQIRDARLDPKVKAIVLRINSPGGSVNASEVIRAELAAARAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DI----- 151
           S G  + +             G  G+   +      L        G ++    DI     
Sbjct: 409 SGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLSSIGVHSDGVSTSPLADISMTKA 468

Query: 152 ------ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
                 +     I    +R   +      +T E+++K        +  +A   G+VD
Sbjct: 469 LSPEVQQMMQLSIEYGYKRFITLVADARKRTPEQIDKIAQGHVW-TGEDAKANGLVD 524


>gi|119505648|ref|ZP_01627718.1| protease IV [marine gamma proteobacterium HTCC2080]
 gi|119458460|gb|EAW39565.1| protease IV [marine gamma proteobacterium HTCC2080]
          Length = 611

 Score = 40.2 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 56/178 (31%), Gaps = 32/178 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP---PISTFCMGQAA 112
           +  + +QL     +   + + L INSPGG V A   I   +  IK    P+       AA
Sbjct: 347 SDTVVSQLERALEQPDLRAVVLRINSPGGSVFASEVIRQKILEIKAADLPVVASMGAVAA 406

Query: 113 SMGSLLLS------------AGEKGMRFALPNARILLHQPSGGFSG-------------- 146
           S G  + +             G  G+  A P    L         G              
Sbjct: 407 SGGYYIAADADEILAQPSTITGSIGVFAAFPTVEKLYQWAGVTSDGVSTSSLATAARVDT 466

Query: 147 QASDI--ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
             SD         I K+      +     GKT+EE+          S  +A   G+VD
Sbjct: 467 GVSDTGRRIINSMISKVYDDFVTLVALGRGKTWEEINSVAGGRVW-SGEDALSVGLVD 523


>gi|320197690|gb|EFW72301.1| Head-tail preconnector protein GP5 [Escherichia coli WV_060327]
          Length = 439

 Score = 40.2 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I ++L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 108 NGIISRLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 167

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 168 GQLLASAASRRLVTQIARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 227

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   +R   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 228 PDDVRETLQSRMDATRRMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 285

Query: 207 S 207
           S
Sbjct: 286 S 286


>gi|253989459|ref|YP_003040815.1| protease 4 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253780909|emb|CAQ84071.1| protease iv (endopeptidase iv) (signal peptide peptidase)
           [Photorhabdus asymbiotica]
          Length = 618

 Score = 40.2 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 60/178 (33%), Gaps = 31/178 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD---TMQFIKPPISTFCMGQAA 112
                AQ+     ++  K + L +NSPGG V+A   I      ++    P+     G AA
Sbjct: 349 GDTTAAQIRQARLDDNIKAVVLRVNSPGGSVSASDVIRTELAALRAANKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DI----- 151
           S G  + +             G  G+   +      L        G ++    DI     
Sbjct: 409 SGGYWISTPANYIIANQSTLTGSIGIFGVITTYENSLDHVGIHTDGVSTTPLADISFTKG 468

Query: 152 ------ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
                 E    +I    +    +      KT EEV+K       +  ++A   G+VD+
Sbjct: 469 LSKEFSELMQLNIENGYKNFIGLVADARNKTPEEVDKIAQGHVWI-GNDAKTNGLVDQ 525


>gi|45602163|gb|AAS71641.1| PfaP [Leptospira interrogans serovar Copenhageni str. Fiocruz
           L1-130]
          Length = 242

 Score = 40.2 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 68/187 (36%), Gaps = 31/187 (16%)

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP--PISTFCMGQAASMGSL 117
             +L  +E     K I + INSPGG V A   +Y+ +  ++    I       AAS G  
Sbjct: 1   MQKLRDIEQNPNIKGILIEINSPGGTVGASQEVYNELMRLRKTRKIVVSMKDMAASGGYY 60

Query: 118 LLSAGEK------------GMRFALPNARILLH----QPSGGFSGQASDI---------- 151
           + SA +K            G+    PN + LL     +      G+  D           
Sbjct: 61  IASAADKIFALSGTITGSIGVIAMAPNIKGLLDRYGVKMRTYKEGKYKDSLSLFRDSTPE 120

Query: 152 --ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
             E   + +        +   K   +T + V+   +   I S  +A    +VD++   + 
Sbjct: 121 EDEMIQKMLSDTYNEFIQDVAKGRNQTVKSVQNLAE-GKIYSGQDAFRNKLVDEIGGRKE 179

Query: 210 DIEEKSK 216
            +EE S+
Sbjct: 180 ALEELSR 186


>gi|327394084|dbj|BAK11506.1| protease IV SppA [Pantoea ananatis AJ13355]
          Length = 624

 Score = 40.2 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 55/177 (31%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY---DTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA  AI       +    PI     G AA
Sbjct: 355 GDTTAAQIRDARLDPKIKAIILRVNSPGGSVTASEAIRAELAAAKAAGKPIVVSMGGMAA 414

Query: 113 S------------MGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS----DI----- 151
           S            + S     G  G+   +      L        G A+    D+     
Sbjct: 415 SGGYWISTPASYIIASPSTLTGSIGIFGVINTLENSLASIGVHTDGVATSPLADVASTKA 474

Query: 152 ------ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
                 +     I         +   +  KT E+++         + S+A   G+VD
Sbjct: 475 LPPEVQQLMQLTIENGYHNFVGLVAASRHKTPEQIDAIAQGHVW-TGSDAKANGLVD 530


>gi|291617657|ref|YP_003520399.1| SppA [Pantoea ananatis LMG 20103]
 gi|291152687|gb|ADD77271.1| SppA [Pantoea ananatis LMG 20103]
          Length = 624

 Score = 40.2 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 55/177 (31%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY---DTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA  AI       +    PI     G AA
Sbjct: 355 GDTTAAQIRDARLDPKIKAIILRVNSPGGSVTASEAIRAELAAAKAAGKPIVVSMGGMAA 414

Query: 113 S------------MGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS----DI----- 151
           S            + S     G  G+   +      L        G A+    D+     
Sbjct: 415 SGGYWISTPASYIIASPSTLTGSIGIFGVINTLENSLASIGVHTDGVATSPLADVASTKA 474

Query: 152 ------ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
                 +     I         +   +  KT E+++         + S+A   G+VD
Sbjct: 475 LPPEVQQLMQLTIENGYHNFVGLVAASRHKTPEQIDAIAQGHVW-TGSDAKANGLVD 530


>gi|308174327|ref|YP_003921032.1| membrane bound hydrolase [Bacillus amyloliquefaciens DSM 7]
 gi|307607191|emb|CBI43562.1| putative membrane bound hydrolase [Bacillus amyloliquefaciens DSM
           7]
          Length = 438

 Score = 40.2 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 56/154 (36%), Gaps = 25/154 (16%)

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           ++      E+    I L IN+PGG V + + I D +     P++ +   +A S G+ +  
Sbjct: 52  SRSFKDAKESGASHIILDINTPGGAVQSALDIADIIGGSDVPVTAYVNKRALSAGAYIAL 111

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASD----------IERHAQDIVKI-KRRLN--- 166
             ++   +  P  ++          G A+D          +E  A    +  K  L    
Sbjct: 112 QADEI--YMAPGGKMGAA-AIIDGKGNAADKKAQSLWHAEMEDAAAKNNRNPKYALAMAD 168

Query: 167 -EIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
             I  K  G    ++         ++A +A + G
Sbjct: 169 PAINAKEAGAPKGKLLT-------LTAEKAKEVG 195


>gi|323942023|gb|EGB38201.1| peptidase S49 [Escherichia coli E482]
          Length = 362

 Score = 40.2 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 95  NGIIARLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 154

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
           G LL S             G  G+  A  N             L++  S    G      
Sbjct: 155 GQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 214

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   ++   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 215 PDDVRETLQSRMDATRQMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 272

Query: 207 S 207
           S
Sbjct: 273 S 273


>gi|217076631|ref|YP_002334347.1| periplasmic serine protease [Thermosipho africanus TCF52B]
 gi|217036484|gb|ACJ75006.1| periplasmic serine protease [Thermosipho africanus TCF52B]
          Length = 291

 Score = 40.2 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 3/83 (3%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
           + +   I+   +  +   +           I L I++PGG+V A   I + ++  K  ++
Sbjct: 75  LPIRRYIDIEDSEELIRAIKM---TPNDMPIDLIIHTPGGLVLAAEQIANALKKHKGKVT 131

Query: 105 TFCMGQAASMGSLLLSAGEKGMR 127
            F    A S G+L+  A ++ + 
Sbjct: 132 VFVPHYAMSGGTLIALAADEIVM 154


>gi|194761582|ref|XP_001963008.1| GF15727 [Drosophila ananassae]
 gi|190616705|gb|EDV32229.1| GF15727 [Drosophila ananassae]
          Length = 286

 Score = 40.2 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 44/120 (36%), Gaps = 19/120 (15%)

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            +     P +    G A + G +L +A E   R  LPN  I +H     F          
Sbjct: 120 ALHLCGIPTAAAVNGHAPAAGCVLATACE--YRTMLPNLFIGIHATRFSF---------- 167

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
              I K       +           VE+ L++  +    EA D G+VD+V  ++ +  +K
Sbjct: 168 --VISKWM-----MLSYQSVIPRRVVERALNQGKLFRTEEALDVGLVDEVACNKQEALDK 220


>gi|292488447|ref|YP_003531329.1| protease IV [Erwinia amylovora CFBP1430]
 gi|292899636|ref|YP_003539005.1| protease IV [Erwinia amylovora ATCC 49946]
 gi|291199484|emb|CBJ46601.1| protease IV [Erwinia amylovora ATCC 49946]
 gi|291553876|emb|CBA20921.1| protease IV [Erwinia amylovora CFBP1430]
 gi|312172589|emb|CBX80845.1| protease IV [Erwinia amylovora ATCC BAA-2158]
          Length = 617

 Score = 40.2 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 62/173 (35%), Gaps = 35/173 (20%)

Query: 62  QLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM---QFIKPPISTFCMGQAASMGSLL 118
           Q+     +   K I   +NSPGG VTA   I + +   +    P+     G AAS G  +
Sbjct: 354 QIRAARLDPKIKAIVFRVNSPGGSVTASETIREELAAAKDAGKPVVVSMGGMAASGGYWV 413

Query: 119 LSAGEKGMRFALPNA---------RILLHQPSGGFSGQASD------------------- 150
            +  +     A PN           I   + S    G  +D                   
Sbjct: 414 STPAD--YIIASPNTLTGSIGIFSVINTVENSLEAIGVHTDGVSTSPLADVASTRALPAE 471

Query: 151 IERHAQD-IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
           +++  Q  I K  +   ++  K+  KT  E+++        + S+A   G++D
Sbjct: 472 VQQMTQLSIDKGYQNFIDLVAKSRHKTPGEIDQIAQGHVW-TGSDAKANGLID 523


>gi|269138839|ref|YP_003295540.1| periplasmic serine protease (ClpP class), protease IV [Edwardsiella
           tarda EIB202]
 gi|267984500|gb|ACY84329.1| periplasmic serine protease (ClpP class), protease IV [Edwardsiella
           tarda EIB202]
 gi|304558830|gb|ADM41494.1| Protease IV [Edwardsiella tarda FL6-60]
          Length = 617

 Score = 40.2 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 56/180 (31%), Gaps = 35/180 (19%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM---QFIKPPISTFCMGQAA 112
                AQ+     +   + I L +NSPGG VTA   I   +   +    P+     G AA
Sbjct: 348 GDTTAAQIRQARLDPAIRAIILRVNSPGGSVTASEEIRSALAAARDAGKPVVVSMGGLAA 407

Query: 113 SMG--------SLLLSAGEKGMRFALPNARILLHQPSG----GFSGQA------------ 148
           S G        +++ S         +        +P         G A            
Sbjct: 408 SGGYWISTPANAIIASPSTLTGSIGIFGVINTFEKPLSQLGVYTDGVATSPLADTALTKA 467

Query: 149 -----SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
                SD+ +   +    +        ++  KT  +++        +   +A   G+VD+
Sbjct: 468 LPQSVSDLMQLTIENGYQRFISLVATARH--KTPAQIDSIAQGRVWL-GVDAKANGLVDR 524


>gi|116755019|ref|YP_844137.1| hypothetical protein Mthe_1731 [Methanosaeta thermophila PT]
 gi|116666470|gb|ABK15497.1| Nodulation efficiency protein NfeD [Methanosaeta thermophila PT]
          Length = 421

 Score = 40.2 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 71/168 (42%), Gaps = 17/168 (10%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
           + + G I      L+   + + E+ N    I L +++PGG ++  + I   ++  + P+ 
Sbjct: 25  LRIDGAITPASDDLVKTAIGYAESSNADALI-LMLDTPGGGLSETLEIIAVVERTEIPVV 83

Query: 105 TFCM---GQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKI 161
            +      +A S G+++L + +       PN  I   QP       A++     +    I
Sbjct: 84  GYVSPSGAKAWSAGTMILISTDIA--AMAPNTIIGSAQPVRLLPTGATEPVNDTKTTNAI 141

Query: 162 KRRLNEIYVKNCGKTYEEVEKTLDRDHIMS-----ASEACDWGVVDKV 204
              + E   K  G+      +T  R+ ++S     A EA ++GV++ V
Sbjct: 142 VALIEEK-AKIHGR-----NRTAAREFVLSNLNLNAEEALEYGVIEHV 183


>gi|237843529|ref|XP_002371062.1| hypothetical protein TGME49_013130 [Toxoplasma gondii ME49]
 gi|211968726|gb|EEB03922.1| hypothetical protein TGME49_013130 [Toxoplasma gondii ME49]
          Length = 144

 Score = 40.2 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 7/33 (21%), Positives = 16/33 (48%)

Query: 173 CGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
              T  E+ + + +   ++  EA   G++D +L
Sbjct: 112 TTTTAAELLRLMQKGVFLTPEEAKALGIIDYIL 144


>gi|330431156|gb|AEC16215.1| putative protease [Gallibacterium anatis UMN179]
          Length = 619

 Score = 40.2 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 5/89 (5%)

Query: 40  LKERIVFVTGQIEDH-MATLICAQLLFLEAENPQ-KEISLYINSPGGVVTAGMAIY---D 94
           L+     + G+ +D  +     A+LL   AEN   K + L INSPGG   A   I    +
Sbjct: 328 LRVEGTIIDGESDDENVGGDTIARLLRQAAENTAVKAVVLRINSPGGSAFASEVIREEVE 387

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGE 123
            +Q I  P+     G AAS G  + S  +
Sbjct: 388 HLQQIGKPVVVSMGGMAASGGYWIASTAD 416


>gi|291457864|ref|ZP_06597254.1| conserved hypothetical protein [Bifidobacterium breve DSM 20213]
 gi|291380519|gb|EFE88037.1| conserved hypothetical protein [Bifidobacterium breve DSM 20213]
          Length = 50

 Score = 40.2 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 21/32 (65%)

Query: 163 RRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           +++++++    G+  + V++  +RD  MS+SE
Sbjct: 5   QKVDKMFASFTGQPLDMVQQWTERDRFMSSSE 36


>gi|221504959|gb|EEE30624.1| conserved hypothetical protein [Toxoplasma gondii VEG]
          Length = 144

 Score = 40.2 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 7/33 (21%), Positives = 16/33 (48%)

Query: 173 CGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
              T  E+ + + +   ++  EA   G++D +L
Sbjct: 112 TTTTAAELLRLMQKGVFLTPEEAKALGIIDYIL 144


>gi|154686799|ref|YP_001421960.1| YqeZ [Bacillus amyloliquefaciens FZB42]
 gi|154352650|gb|ABS74729.1| YqeZ [Bacillus amyloliquefaciens FZB42]
          Length = 438

 Score = 40.2 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 54/146 (36%), Gaps = 25/146 (17%)

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           E+    I L IN+PGG V + + I D +     P++ +   +A S G+ +    ++   +
Sbjct: 60  ESGASHIILDINTPGGAVQSALDIADIIGRADVPVTAYVNKRALSAGAYIALQADEI--Y 117

Query: 129 ALPNARILLHQPSGGFSGQASD----------IERHAQDIVKI-KRRLN----EIYVKNC 173
             P  ++          G A+D          +E  A    +  K  L      I  K  
Sbjct: 118 MAPGGKMGAA-AIIDGKGNAADKKAQSLWHAEMEDAAVKNNRNPKYALAMADPAINAKEA 176

Query: 174 GKTYEEVEKTLDRDHIMSASEACDWG 199
           G    ++         ++A +A + G
Sbjct: 177 GAPKGKLLT-------LTAEKAKEVG 195


>gi|121534385|ref|ZP_01666209.1| protein of unknown function DUF114 [Thermosinus carboxydivorans
           Nor1]
 gi|121307155|gb|EAX48073.1| protein of unknown function DUF114 [Thermosinus carboxydivorans
           Nor1]
          Length = 277

 Score = 40.2 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 60/160 (37%), Gaps = 17/160 (10%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
           V ++  I    +  I   L  +        I L +++PGG+V A   I   +      ++
Sbjct: 59  VPISRYINIEDSEHI---LRAIRLTPDDMPIDLVLHTPGGLVLASEQIAHALMRHPAKVT 115

Query: 105 TFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQ--ASDIERHAQD--IVK 160
            F    A S G+++  A ++ +          +  P     GQ  A+ I +  +   I +
Sbjct: 116 VFVPHYAMSGGTMIALAADEIVM-----DCNAVLGPVDPQLGQYPAASILKAVKQKSIDR 170

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDR---DHIMSASEACD 197
           +      I      K  ++VE  + R   D  M A +A +
Sbjct: 171 VDDN-TLIMADIAEKAIKQVEDFVARLLSDK-MDAEKARE 208


>gi|86356057|ref|YP_467949.1| proteinase IV protein [Rhizobium etli CFN 42]
 gi|86280159|gb|ABC89222.1| proteinase IV protein [Rhizobium etli CFN 42]
          Length = 316

 Score = 40.2 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 66/180 (36%), Gaps = 35/180 (19%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI--KPPISTFCMGQAASM 114
             +  +L  +E  N  K   + I+SPGG    G  I++ ++ I  K P+ +     AAS 
Sbjct: 62  DELLERLKKVETSNQVKAAVISISSPGGTTYGGEKIFNAIRAISAKKPVVSDVRTLAASA 121

Query: 115 GSLLLSAGE------------KGMRFALPNARILL------------------HQPSGGF 144
           G ++ +AG+             G+ F  P  + LL                    P    
Sbjct: 122 GYMIATAGDTIIAGDSSITGSIGVIFQYPQIQPLLDKIGVSLQEIKSSPLKAEPSPFHEA 181

Query: 145 SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           S +A  + R    +V       ++  +      EEV K  D   I +  +A    +VD +
Sbjct: 182 SEEAKAMIR--NMVVDSYNWFVDLVAERRKLPREEVLKLAD-GTIYTGRQALQAKLVDTI 238


>gi|30062971|ref|NP_837142.1| protease 4 [Shigella flexneri 2a str. 2457T]
 gi|56479902|ref|NP_707347.2| protease 4 [Shigella flexneri 2a str. 301]
 gi|110805427|ref|YP_688947.1| protease 4 [Shigella flexneri 5 str. 8401]
 gi|30041220|gb|AAP16949.1| protease IV, a signal peptide peptidase [Shigella flexneri 2a str.
           2457T]
 gi|56383453|gb|AAN43054.2| protease IV, a signal peptide peptidase [Shigella flexneri 2a str.
           301]
 gi|110614975|gb|ABF03642.1| protease IV, a signal peptide peptidase [Shigella flexneri 5 str.
           8401]
 gi|281600872|gb|ADA73856.1| putative Periplasmic serine proteases (ClpP class) [Shigella
           flexneri 2002017]
 gi|313649199|gb|EFS13633.1| signal peptide peptidase SppA, 67K type [Shigella flexneri 2a str.
           2457T]
          Length = 618

 Score = 40.2 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 58/177 (32%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +     +     G AA
Sbjct: 349 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKSVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 409 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 468

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 469 LPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 524


>gi|296134407|ref|YP_003641654.1| signal peptide peptidase SppA, 36K type [Thermincola sp. JR]
 gi|296032985|gb|ADG83753.1| signal peptide peptidase SppA, 36K type [Thermincola potens JR]
          Length = 315

 Score = 40.2 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 66/178 (37%), Gaps = 30/178 (16%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM---QFIKPPISTFCMGQAA 112
           A  I  QL     +   K + + INSPGG V A   I + +   +     +       AA
Sbjct: 65  AESIMEQLREAAKDKSLKAVIIRINSPGGTVAASQEIGEEVEKVRKAGKKVVISMGDVAA 124

Query: 113 SMGSLLLSAGEK------------GMRFALPNARILLHQP----SGGFSGQASDIERHAQ 156
           S G  + + G+K            G+     N   L ++         SG   D+   ++
Sbjct: 125 SGGYWIAAKGDKIVANPGTVTGSIGVIMESLNMSDLYNKVGIADQSIKSGAHKDMGSPSR 184

Query: 157 DIVKIKRRLNEIYVKNC-GKTYEEVEK--TLDRD--------HIMSASEACDWGVVDK 203
            + + ++ + +  V +   +  + V K   + R+         + +  +A   G+VD+
Sbjct: 185 PLTQEEKVILQSMVDDMFNQFVDVVAKGRRMKREDVLKIADGRVFTGRQAKSLGLVDE 242


>gi|148264257|ref|YP_001230963.1| signal peptide peptidase SppA, 36K type [Geobacter uraniireducens
           Rf4]
 gi|146397757|gb|ABQ26390.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49
           [Geobacter uraniireducens Rf4]
          Length = 323

 Score = 40.2 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 61/175 (34%), Gaps = 36/175 (20%)

Query: 66  LEAENPQKEI---SLYINSPGGVVTAGMAIYDTMQFIKP----PISTFCMGQAASMGSLL 118
           L+      +I    + INSPGG VTA   I+  +   K     P+    MG  AS G  +
Sbjct: 79  LQKAEKDDDIAGVIVRINSPGGTVTASDIIHHELLAFKARKKVPVYACIMGIGASGGYYV 138

Query: 119 LSAGEKG---------------MRFALPNARILLH-QPSGGFSGQASDI----------- 151
            +A ++                MRF +      +        SG   D+           
Sbjct: 139 ATAADEISAHPTAVTGSIGVLLMRFEVEGLLTKIGVSEHTVKSGDKKDMLSPFRPATPEE 198

Query: 152 -ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD-HIMSASEACDWGVVDKV 204
            +     I ++  R  ++     G   E  E  +  D  I +A +A    ++D++
Sbjct: 199 EKIIQDVINRLFGRFVDVVQARPGNKLERKELEILADGRIYTAEQALQAKLIDRI 253


>gi|291295936|ref|YP_003507334.1| hypothetical protein Mrub_1552 [Meiothermus ruber DSM 1279]
 gi|290470895|gb|ADD28314.1| protein of unknown function DUF114 [Meiothermus ruber DSM 1279]
          Length = 279

 Score = 39.8 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 86/228 (37%), Gaps = 46/228 (20%)

Query: 14  VFLGLVPMVVEQ---TNRGERSYDIYSRLLKERIV----------FVTGQIEDHMATLIC 60
           +   L P + +Q     R  R  D+  R  K R++          F+      ++     
Sbjct: 13  ILSALSPYLTQQMLLAARTRRITDL-ERKRKSRVITLIHRQEGFSFLGIPFARYIDIDDS 71

Query: 61  AQLLF-LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
            Q+L  +   +    I L +++PGG+V A   I + +      ++ F    A S G+L+ 
Sbjct: 72  EQVLRAIRMTDQSVPIDLILHTPGGLVLAAEQIAEALLKHPAKVTVFVPHYAMSGGTLIA 131

Query: 120 SAGEKGMRFALPNA------------------RILLHQPSGGFSGQA---SDIERHAQDI 158
            A ++      PNA                  R+L  +P      Q    +D+ R A  +
Sbjct: 132 LAADEI--VMDPNAVLGPVDPQLGQYPAASILRVLEQKPIAEIDDQTLIMADVARKA--L 187

Query: 159 VKIKRRLNEIYVKNCG-KTYEEVEKTLDRDHI-----MSASEACDWGV 200
            ++KR +  +  K+   +  +E+ + L +        +S  EA   G+
Sbjct: 188 FQVKRTVAGLLRKHFDEQKSQELAELLSQGTWTHDYPISVEEARSMGL 235


>gi|218440875|ref|YP_002379204.1| signal peptide peptidase SppA, 67K type [Cyanothece sp. PCC 7424]
 gi|218173603|gb|ACK72336.1| signal peptide peptidase SppA, 67K type [Cyanothece sp. PCC 7424]
          Length = 605

 Score = 39.8 bits (92), Expect = 0.23,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 78/211 (36%), Gaps = 36/211 (17%)

Query: 27  NRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQ-LLFLEAENPQKEISLYINSPGGV 85
           N+ E + +  + +  E  +        ++     A+ L  +  +   K + L INSPGG 
Sbjct: 309 NQNESASNQIAVVYAEGEIVDGQGAVSNIGGERFAKELRKIRQDPNVKAVVLRINSPGGS 368

Query: 86  VTAGMAIYDTMQFIK--PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI-------L 136
            TA   I   ++ +K   P+       AAS G  + +  E    FA P+          +
Sbjct: 369 ATASDIIGREVKLMKEKKPVIVSMGNVAASGGYWIAT--EANHIFAEPSTITGSIGVFGM 426

Query: 137 LHQPSGGFS--GQASDIERHAQ--------------DIVKIKRRLNEIY-------VKNC 173
           L       +  G   D+ + A+              ++   +R + +IY        ++ 
Sbjct: 427 LFNVQDIANNNGITWDVVKTAKLADLGTTTRPKTEQELAIYQRSVQQIYNLFVNKVAQSR 486

Query: 174 GKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
                +V++  +     S  +A   G+VD++
Sbjct: 487 NLPESKVKQIAEGRVW-SGEDAKQLGLVDEI 516


>gi|126651359|ref|ZP_01723566.1| SppA [Bacillus sp. B14905]
 gi|126591888|gb|EAZ85971.1| SppA [Bacillus sp. B14905]
          Length = 337

 Score = 39.8 bits (92), Expect = 0.23,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 67/175 (38%), Gaps = 33/175 (18%)

Query: 62  QLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP----PISTFCMGQAASMGSL 117
           QL  +  ++  + I L +NSPGG V     IY  +  IK     PI       AAS G  
Sbjct: 93  QLDNILYDDTIQGIVLSVNSPGGGVKESAEIYKKLLKIKEERQIPIYVSMDSMAASGGYY 152

Query: 118 LLSAGEK--GMRFALPNARILLHQP--------------SGGFSGQASDI-----ERHAQ 156
           + +  +K    R  +  +  ++ Q                   SG+  D+     +   +
Sbjct: 153 ISAPADKIFAHRDTITGSIGVIMQSINYQALAEKVGVKFETFKSGEHKDMLSPMRDVTPE 212

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD-------HIMSASEACDWGVVDKV 204
           +   ++  +NE Y +      E+     + D        I+  ++A + G+VD++
Sbjct: 213 ERAMMQDMINETYEEFVDI-VEQGRNMSEADVKKVADGRILGGTKALEAGLVDEI 266


>gi|304392989|ref|ZP_07374920.1| conserved hypothetical protein [Ahrensia sp. R2A130]
 gi|303294987|gb|EFL89356.1| conserved hypothetical protein [Ahrensia sp. R2A130]
          Length = 314

 Score = 39.8 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 53/139 (38%), Gaps = 13/139 (9%)

Query: 70  NPQKEI-SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           +  K+I  L ++SPGG V   +A+   ++           G  AS   LLL+ G    R 
Sbjct: 158 DNDKQIGELTLHSPGGSVADALAMSRAIREAGISTRVSANGYCASSCPLLLAGGL--YRS 215

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD- 187
           A   A I +HQ     +   + ++R   D   +     ++ V   G   +   + ++   
Sbjct: 216 AGTGAYIGVHQIYAAPTANGT-LQRGMADAQTVSALCQQLLVD-MGVDLQVWVRAMETPA 273

Query: 188 ---HIMSASE----ACDWG 199
              ++ +  E    A   G
Sbjct: 274 AQLYLFTPDELSRYALANG 292


>gi|257076483|ref|ZP_05570844.1| putative signal peptide peptidase SppA [Ferroplasma acidarmanus
           fer1]
          Length = 239

 Score = 39.8 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 66/188 (35%), Gaps = 35/188 (18%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ--FIKPPISTF 106
           G I           L ++E +N  K + L INS GG   A   +Y+ +     K P+   
Sbjct: 10  GTITGSSPGTYMPALRYIEKKNKVKALLLIINSGGGDANATEILYNQLMKISSKKPVYAL 69

Query: 107 CMGQAASMGSLLLSAGEK--GMRFALPNARILLHQPSGGFS--------------GQASD 150
             G  AS    L  + EK   MR +L  +  ++                      G+  D
Sbjct: 70  IEGIGASGAYWLACSAEKIFAMRTSLVGSIGVISMSPDFSEFLDTLGIKMRINKVGKYKD 129

Query: 151 IE-----RHAQDIVKIKRRLNEIYV---------KNCGKTYEEVEKTLDRDHIMSASEAC 196
           I         ++       + ++Y          +N G   E++ + +    + SA +A 
Sbjct: 130 INSPFRPMTEEENAIYNNIMKDVYSVFREEVKKRRNLG---EDIMEEIATGLVFSAEQAK 186

Query: 197 DWGVVDKV 204
             G++D +
Sbjct: 187 KNGLIDGI 194


>gi|23009603|ref|ZP_00050591.1| COG0616: Periplasmic serine proteases (ClpP class)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 320

 Score = 39.8 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 58/168 (34%), Gaps = 30/168 (17%)

Query: 77  LYINSPGGVVTAGMAIYDTMQF----IKPPISTFCMGQAASMGSLLLS------------ 120
           L INSPGG       I+  ++      K  +  F    AAS G ++              
Sbjct: 66  LIINSPGGSPVQSHLIFRRIRALAAEKKVKVFAFVEDAAASGGYMIACAADEIVADPASL 125

Query: 121 AGEKGMRFALPNARILLHQP----SGGFSGQASDIER-----HAQDIVKIKRRLNEIYVK 171
            G  G+  A      L+ +          G+A  +       + QDI ++K    ++   
Sbjct: 126 VGSIGVVSAGFGFDRLIERIGIERRVHTQGEAKAMLDPFRPENPQDIARLKEIQADVQAL 185

Query: 172 NCGKTYEEVEKTL-DRDHIM----SASEACDWGVVDKVLMSRIDIEEK 214
             G   E       DRD       +  +A D G+VD +   R  + E+
Sbjct: 186 FTGLVRERRPTLTADRDLFTGAVWTGRQALDLGLVDALGDLRGTLRER 233


>gi|197334260|ref|YP_002156464.1| signal peptide peptidase SppA, 67K type [Vibrio fischeri MJ11]
 gi|197315750|gb|ACH65197.1| signal peptide peptidase SppA, 67K type [Vibrio fischeri MJ11]
          Length = 618

 Score = 39.8 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 74/231 (32%), Gaps = 37/231 (16%)

Query: 3   FEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQ 62
           ++   +    D    + P V+        + DI   +    I+  T +          A 
Sbjct: 303 YDSFKQISYYDYLSQVQPTVIP------DAQDIAVVVASGAIMDGTERQGTVGGDSTAAL 356

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAASMGSLL- 118
           L     ++  K + L ++SPGG   A   I    D ++    P+       AAS G  + 
Sbjct: 357 LRQARGDDKVKAVVLRVDSPGGSAFASEVIRNEIDALKEAGKPVVVSMSSVAASGGYWIS 416

Query: 119 ----------------------LSAGEKGMRFALPNARILLHQPS---GGFSGQASDIER 153
                                 L+  EKG+     ++  +   P    G       D+ +
Sbjct: 417 ASADKIIAQPTTITGSIGIFGILTTFEKGLEKMGIHSDGISTSPFNGVGITRPLNDDVAQ 476

Query: 154 HAQD-IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
             Q  I     R  ++   +   + E V+K        +  +A   G+VD+
Sbjct: 477 VMQLGIEHGYHRFIKLVSDHRNLSLEAVDKVAQGRVW-TGKDALKHGLVDQ 526


>gi|238919550|ref|YP_002933065.1| signal peptide peptidase SppA, 67K type, putative [Edwardsiella
           ictaluri 93-146]
 gi|238869119|gb|ACR68830.1| signal peptide peptidase SppA, 67K type, putative [Edwardsiella
           ictaluri 93-146]
          Length = 617

 Score = 39.8 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 69/218 (31%), Gaps = 43/218 (19%)

Query: 20  PMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHM--ATLICAQLLFLEAENPQKEISL 77
           P+  ++T  G+ +    S         + G+            AQ+     +   + I L
Sbjct: 316 PLKPKRTGNGQIAVIFASG------PIIDGEATPGSVGGDTTAAQIRQARLDPAIRAIIL 369

Query: 78  YINSPGGVVTAGMAIYDTM---QFIKPPISTFCMGQAASMG--------SLLLSAGEKGM 126
            +NSPGG VTA   I   +   +    P+     G AAS G        +++ S      
Sbjct: 370 RVNSPGGSVTASEEIRSALAAARDAGKPVVVSMGGLAASGGYWISTPANTIVASPSTLTG 429

Query: 127 RFALPNARILLHQPSG----GFSGQA-----------------SDIERHAQDIVKIKRRL 165
              +        +P G       G A                 SD+ +   +    +   
Sbjct: 430 SIGIFGVINTFEKPLGLLGVYTDGVATSPLADTALTKALPQSVSDLMQLTIENGYQRFIS 489

Query: 166 NEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
                ++  KT  +++        +   +A   G+VD+
Sbjct: 490 LVATARH--KTPAQIDNIAQGRVWL-GVDAKANGLVDR 524


>gi|212223529|ref|YP_002306765.1| Hypothetical endopeptidase IV [Thermococcus onnurineus NA1]
 gi|212008486|gb|ACJ15868.1| Hypothetical endopeptidase IV [Thermococcus onnurineus NA1]
          Length = 335

 Score = 39.8 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 2/83 (2%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--P 101
           IV + G I+++ A  I   L  +   +    + L+I SPGG V     IY T++ +    
Sbjct: 93  IVPIFGLIDEYTALSIIPVLRDIAGNDSIGGVVLWIESPGGYVGPVREIYATVKKLNLIK 152

Query: 102 PISTFCMGQAASMGSLLLSAGEK 124
           P+  +  G AAS G  +    E+
Sbjct: 153 PVVAYTGGIAASGGYYIAVGAEE 175


>gi|84686126|ref|ZP_01014022.1| enoyl-CoA hydratase/isomerase family protein [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84666219|gb|EAQ12693.1| enoyl-CoA hydratase/isomerase family protein [Rhodobacterales
           bacterium HTCC2654]
          Length = 234

 Score = 39.8 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 72/195 (36%), Gaps = 37/195 (18%)

Query: 31  RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLE----AENPQKEISLYINSPGGVV 86
           R  D   RL ++  +++        A  +  ++L LE    AE         I +  G V
Sbjct: 29  RGPDRMIRLERDGGLWIATIARPDKANSLTREML-LELATVAEEASSSARALIFTGEGKV 87

Query: 87  TAGMAIYDTMQF--IKPPISTFCMGQAASMGSLL-------LSAGEKGM------RFALP 131
            +  A  D  +      P+     G  AS   L        L+ G  GM      R A+P
Sbjct: 88  FSAGADLDEARAGLATDPVWERLSGAIASAPILTIAALNGTLAGGAMGMALACDLRIAVP 147

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
           +A+        GF  Q SD +R A  +   + ++  +     G+  E             
Sbjct: 148 SAKFFYPVMKLGFLPQPSDPKRLAALVGPSRAKMI-LMA---GQKVE------------- 190

Query: 192 ASEACDWGVVDKVLM 206
           A EA DWG++D+++ 
Sbjct: 191 APEALDWGLIDRIID 205


>gi|220918516|ref|YP_002493820.1| protein of unknown function DUF114 [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219956370|gb|ACL66754.1| protein of unknown function DUF114 [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 339

 Score = 39.8 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           K + L ++SPGG   A  AI + M+     +       A S  ++L  +G++
Sbjct: 84  KGVDLILHSPGGSAEAAEAIVNYMRSKFSDVRVIVPHAAMSAATMLACSGDR 135


>gi|221127548|ref|XP_002155030.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 291

 Score = 39.8 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 31/133 (23%)

Query: 89  GMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE-----KGMRFALPNARILLHQPSGG 143
              + + +Q I  P+     G A + G  L++  +         FA+P   I L      
Sbjct: 119 CTELMNLIQDIPTPVIAEVNGIATAAGCQLVATCDIAVATHTSSFAVPGVLIGLF---CS 175

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
             G A      A+ I + K+ L  ++    G                +A EA  +G++++
Sbjct: 176 TPGVA-----LARSIHR-KQALKMLF---TGDPI-------------TAQEALSYGLINE 213

Query: 204 VLMSRIDIEEKSK 216
           ++ S   +++ SK
Sbjct: 214 IV-SEEKLQQTSK 225


>gi|94968290|ref|YP_590338.1| enoyl-CoA hydratase/isomerase [Candidatus Koribacter versatilis
           Ellin345]
 gi|94550340|gb|ABF40264.1| cyclohexa-1,5-diene-1-carbonyl-CoA hydratase [Candidatus Koribacter
           versatilis Ellin345]
          Length = 265

 Score = 39.8 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 20/118 (16%)

Query: 88  AGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQ 147
           A   ++ ++  I  P+     GQA   GS L++ G+  M  A PNA+ +  +   G    
Sbjct: 90  AFNHVFQSISEISKPLIVVVNGQAVGAGSELVAFGD--MVIATPNAKFMQPEVKMGVFPP 147

Query: 148 ASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            + I   A  ++  K+    I     G+              +SA EA + G V++V+
Sbjct: 148 FAAIMLPA--VIGPKKTYELIL---TGQA-------------LSADEALELGFVNRVV 187


>gi|270294203|ref|ZP_06200405.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. D20]
 gi|270275670|gb|EFA21530.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. D20]
          Length = 589

 Score = 39.8 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 68/178 (38%), Gaps = 31/178 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP--PISTFCMGQAAS 113
           +  +   L  L+ +   K + L +NSPGG       I+  +  +K   P+       AAS
Sbjct: 330 SKKVIKDLRKLKDDEDVKAVVLRVNSPGGSAYGSEQIWYAVSELKKEKPVIVSMGDYAAS 389

Query: 114 MGSLLLSA------------GEKGMRFALPNARILLHQPSGGF----SGQASDIERHAQD 157
            G  +               G  G+    PNA+ L  +    F    + + +D     + 
Sbjct: 390 GGYYISCNADTIVAEPTTLTGSIGIFGMFPNAKGLTDKIGVNFDVVKTNKYADFGMLTRP 449

Query: 158 IVKIKRRLNEIYVKN------C------GKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
           +   ++ L ++YV N             G + E+++K        + S+A + G+VD+
Sbjct: 450 MNDGEKGLMQMYVNNGYDLFLTRCSDGRGISKEDLDKIAQGRVW-TGSKAKELGLVDE 506


>gi|227819143|ref|YP_002823114.1| hypothetical protein NGR_b09050 [Sinorhizobium fredii NGR234]
 gi|227338142|gb|ACP22361.1| conserved hypothetical protein [Sinorhizobium fredii NGR234]
          Length = 264

 Score = 39.8 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 3/83 (3%)

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           ++ +NSPGG V   +AI   ++  K           AS   ++ + G    R A  +A +
Sbjct: 125 TVALNSPGGSVDDALAISSLIRERKLGTKVASRALCASSCPIIFAGG--VSRVAEKDAIV 182

Query: 136 LLHQPSGGFSG-QASDIERHAQD 157
            +HQ   G SG Q +D    A  
Sbjct: 183 GVHQVFNGGSGRQTADQAMSAAQ 205


>gi|195146968|ref|XP_002014455.1| GL18945 [Drosophila persimilis]
 gi|198473543|ref|XP_002132515.1| GA25867 [Drosophila pseudoobscura pseudoobscura]
 gi|194106408|gb|EDW28451.1| GL18945 [Drosophila persimilis]
 gi|198138007|gb|EDY69917.1| GA25867 [Drosophila pseudoobscura pseudoobscura]
          Length = 286

 Score = 39.8 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 44/116 (37%), Gaps = 19/116 (16%)

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            +     P +    G A + G ++ +A E   R  LP+  I +H     F          
Sbjct: 120 ALHLCGIPTAAAINGHAPAAGCIMATACE--YRVMLPDFVIGVHATRFSF--------LV 169

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           ++ +         +           VE+ L++  + S  EA + G++D+V  S+ +
Sbjct: 170 SKWM---------MLSYQSVLPRRIVERALNQGKLFSTQEALEVGLIDEVAGSKKE 216


>gi|190576019|ref|YP_001973864.1| putative protease IV [Stenotrophomonas maltophilia K279a]
 gi|190013941|emb|CAQ47581.1| putative protease IV [Stenotrophomonas maltophilia K279a]
          Length = 640

 Score = 39.8 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 60/165 (36%), Gaps = 32/165 (19%)

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYD---TMQFIKPPISTFCMGQAASMGSLLLSA---- 121
           +   K + L ++SPGG V A   I      +Q    P+       AAS G  +       
Sbjct: 377 DENVKAVVLRVDSPGGEVFASEQIRREVVALQAAGKPVVVSMGDLAASGGYWISMNADRI 436

Query: 122 --------GEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK---------IKRR 164
                   G  G+   +PN    L +      G  +     A D+ +         I+  
Sbjct: 437 YADPSTITGSIGIFGMVPNFSRALDKIGVHTDGVGTTRFAGAFDVTRPMDPAVGQVIQSV 496

Query: 165 LNEIYVKNCG-------KTYEEVEKTLDRDHIMSASEACDWGVVD 202
           +N+ Y    G       K  E V++ + R  + S ++A + G+VD
Sbjct: 497 INKGYADFTGRVADARKKPVEAVDE-VARGRVWSGAQAKERGLVD 540


>gi|313901748|ref|ZP_07835175.1| protein of unknown function DUF114 [Thermaerobacter subterraneus
           DSM 13965]
 gi|313467984|gb|EFR63471.1| protein of unknown function DUF114 [Thermaerobacter subterraneus
           DSM 13965]
          Length = 280

 Score = 39.5 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 47/105 (44%), Gaps = 3/105 (2%)

Query: 21  MVVEQTNRGERSYDIYSRLLKERIVFV-TGQIEDHMATLICAQLLF-LEAENPQKEISLY 78
            V+ Q  R ER   + + + ++  + +    +  ++      Q+L  +    P   I L 
Sbjct: 37  QVIRQLER-ERGSRVITLIHRQESLSLLGIPLTRYITVDDSEQVLRAIRYTPPNMPIDLI 95

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           +++PGG+V A   I + ++  +  ++      A S G+L+  A +
Sbjct: 96  VHTPGGLVLAAEQIAEAIRRHRGRVTVMVPHYAMSGGTLIALAAD 140


>gi|160890040|ref|ZP_02071043.1| hypothetical protein BACUNI_02479 [Bacteroides uniformis ATCC 8492]
 gi|317481508|ref|ZP_07940572.1| signal peptide peptidase SppA [Bacteroides sp. 4_1_36]
 gi|156860428|gb|EDO53859.1| hypothetical protein BACUNI_02479 [Bacteroides uniformis ATCC 8492]
 gi|316902325|gb|EFV24215.1| signal peptide peptidase SppA [Bacteroides sp. 4_1_36]
          Length = 589

 Score = 39.5 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 68/178 (38%), Gaps = 31/178 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP--PISTFCMGQAAS 113
           +  +   L  L+ +   K + L +NSPGG       I+  +  +K   P+       AAS
Sbjct: 330 SKKVIKDLRKLKDDEDVKAVVLRVNSPGGSAYGSEQIWYAVSELKKEKPVIVSMGDYAAS 389

Query: 114 MGSLLLSA------------GEKGMRFALPNARILLHQPSGGF----SGQASDIERHAQD 157
            G  +               G  G+    PNA+ L  +    F    + + +D     + 
Sbjct: 390 GGYYISCNADTIVAEPTTLTGSIGIFGMFPNAKGLTDKIGVNFDVVKTNKYADFGMLTRP 449

Query: 158 IVKIKRRLNEIYVKN------C------GKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
           +   ++ L ++YV N             G + E+++K        + S+A + G+VD+
Sbjct: 450 MNDGEKGLMQMYVNNGYDLFLTRCSDGRGISKEDLDKIAQGRVW-TGSKAKELGLVDE 506


>gi|15613919|ref|NP_242222.1| hypothetical protein BH1356 [Bacillus halodurans C-125]
 gi|10173972|dbj|BAB05075.1| BH1356 [Bacillus halodurans C-125]
          Length = 445

 Score = 39.5 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 61/156 (39%), Gaps = 17/156 (10%)

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           E     I L IN+PGG V A   +   ++    PI+ + + QA S G+ +    ++    
Sbjct: 65  EEGADHIVLEINTPGGRVDAAGNMARALRETDIPITAYVIDQALSAGAYIALNADEI--V 122

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKR---------RLNEIYVKNCGKTYEE 179
             P + +          G A+D +  +  + +++          +           + E 
Sbjct: 123 MAPGSTMGSAAVIDSA-GNAADEKAQSYWLAEMRNAAEYNDRDPKYALAMADR---SIEI 178

Query: 180 VEKTLDRDHI--MSASEACDWGVVDKVLMSRIDIEE 213
            E  +  + +  ++AS+A +    + +  +R ++ E
Sbjct: 179 PELDISNEELLTLTASQALEVNYAEAIASNRAELLE 214


>gi|56460146|ref|YP_155427.1| putative periplasmic protease [Idiomarina loihiensis L2TR]
 gi|56179156|gb|AAV81878.1| Periplasmic serine protease, ClpP family [Idiomarina loihiensis
           L2TR]
          Length = 332

 Score = 39.5 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 54/157 (34%), Gaps = 47/157 (29%)

Query: 96  MQFIKPPISTFCMGQAAS------------MGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           ++     ++      AAS            M +     G  G+   +PN   LL + +  
Sbjct: 146 LREHNLTVNVAIDKVAASGGYMMACVGHKLMAAPFAFIGSIGVVAQIPNFHRLLKKHNVD 205

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNC-------GKTYEEVEK-------------T 183
           F       +  A +    KR L  I+ +N         +  E + +              
Sbjct: 206 FE------QLTAGE---YKRTLT-IFGENTDEGRRKFKQDLEAIHRQFKSFVQENRSELD 255

Query: 184 LDR----DHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           +D+    +   S  EA + G++D+V+ S   + ++ K
Sbjct: 256 IDKVATGEVW-SGQEAKELGLIDEVITSDAWLMKQHK 291


>gi|260432310|ref|ZP_05786281.1| enoyl-CoA hydratase/isomerase family protein [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260416138|gb|EEX09397.1| enoyl-CoA hydratase/isomerase family protein [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 202

 Score = 39.5 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 20/104 (19%)

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIK 162
           ++      A     + L+     +R A+P A+I       GF  Q SD+ R    I   +
Sbjct: 88  VAALNGTMAGGANGMALAC---DLRIAVPTAKIFYPVMRLGFLPQPSDVRRMKALIGPAR 144

Query: 163 RRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
            +L  +     G+               +A EA  +G+VD+V+ 
Sbjct: 145 TKLI-LMA---GQKI-------------TADEALTFGLVDRVVT 171


>gi|297748624|gb|ADI51170.1| protease IV [Chlamydia trachomatis D-EC]
 gi|297749504|gb|ADI52182.1| protease IV [Chlamydia trachomatis D-LC]
          Length = 346

 Score = 39.5 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 54/166 (32%), Gaps = 35/166 (21%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKP----PISTFCMGQAASMGSLLLSAGEK---- 124
           K I + I+ PGG V     +  T+ F K     P+  F  G  AS G  +    +K    
Sbjct: 116 KGILVKIDCPGGEVFEIDRMCATLSFWKKQWGIPVHVFVSGLCASGGYYVACIADKIGTT 175

Query: 125 --------GMRFA--LPNARILLHQPSGGFSGQASD-------IERHAQDIVKIKRRLNE 167
                   G+R          L           A D            ++    ++ + +
Sbjct: 176 SSSLIGSIGVRSGPYFSVKEGLQRHGVETAILTAGDDKAPLNPFSSWTEEEYAERQGIVD 235

Query: 168 IYVK---------NCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            + +             + E++ K L    +  A +A + G+VD +
Sbjct: 236 AFYEQFVDHVVKYRSKLSKEKLTKVLGA-RVFIAKQALEEGLVDAI 280


>gi|296436953|gb|ADH19123.1| exported protease IV [Chlamydia trachomatis G/11222]
          Length = 331

 Score = 39.5 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 54/166 (32%), Gaps = 35/166 (21%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKP----PISTFCMGQAASMGSLLLSAGEK---- 124
           K I + I+ PGG V     +  T+ F K     P+  F  G  AS G  +    +K    
Sbjct: 101 KGILVKIDCPGGEVFEIDRMCATLSFWKKQWGIPVHVFVSGLCASGGYYVACIADKIGTT 160

Query: 125 --------GMRFA--LPNARILLHQPSGGFSGQASD-------IERHAQDIVKIKRRLNE 167
                   G+R          L           A D            ++    ++ + +
Sbjct: 161 SSSLIGSIGVRSGPYFSVKEGLQRHGVETAILTAGDDKAPLNPFSSWTEEEYAERQGIVD 220

Query: 168 IYVK---------NCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            + +             + E++ K L    +  A +A + G+VD +
Sbjct: 221 AFYEQFVDHVVKYRSKLSKEKLTKVLGA-RVFIAKQALEEGLVDAI 265


>gi|282877202|ref|ZP_06286040.1| signal peptide peptidase SppA, 67K type [Prevotella buccalis ATCC
           35310]
 gi|281300694|gb|EFA93025.1| signal peptide peptidase SppA, 67K type [Prevotella buccalis ATCC
           35310]
          Length = 589

 Score = 39.5 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 52/135 (38%), Gaps = 22/135 (16%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF--IKPPISTF 106
           G     + + +C  L  L  ++  K + L INS GG   A   +++ ++    K P+   
Sbjct: 322 GAEHMIVGSEVCKDLEALAEDDDVKAVVLRINSGGGSAYASEQMWNQVEQLKKKKPVVVS 381

Query: 107 CMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLN 166
               AAS           G  +   NA  ++ QP+             +  I  +   ++
Sbjct: 382 MGDMAAS-----------GGYYMGCNANWIVAQPTTLTG---------SIGIFAMIPDMS 421

Query: 167 EIYVKNCGKTYEEVE 181
           ++  +  G  ++EV+
Sbjct: 422 QLLTQKLGIKFDEVK 436


>gi|15605222|ref|NP_220008.1| protease [Chlamydia trachomatis D/UW-3/CX]
 gi|76789231|ref|YP_328317.1| protease IV [Chlamydia trachomatis A/HAR-13]
 gi|237802922|ref|YP_002888116.1| exported protease IV [Chlamydia trachomatis B/Jali20/OT]
 gi|237804844|ref|YP_002888998.1| exported protease IV [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311310|ref|ZP_05353880.1| exported protease IV [Chlamydia trachomatis 6276]
 gi|255317611|ref|ZP_05358857.1| exported protease IV [Chlamydia trachomatis 6276s]
 gi|6578107|gb|AAC68094.2| Protease [Chlamydia trachomatis D/UW-3/CX]
 gi|76167761|gb|AAX50769.1| protease IV [Chlamydia trachomatis A/HAR-13]
 gi|231273144|emb|CAX10057.1| exported protease IV [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274156|emb|CAX10950.1| exported protease IV [Chlamydia trachomatis B/Jali20/OT]
 gi|296436025|gb|ADH18199.1| exported protease IV [Chlamydia trachomatis G/9768]
 gi|296437886|gb|ADH20047.1| exported protease IV [Chlamydia trachomatis G/11074]
 gi|297140386|gb|ADH97144.1| exported protease IV [Chlamydia trachomatis G/9301]
          Length = 331

 Score = 39.5 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 54/166 (32%), Gaps = 35/166 (21%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFIKP----PISTFCMGQAASMGSLLLSAGEK---- 124
           K I + I+ PGG V     +  T+ F K     P+  F  G  AS G  +    +K    
Sbjct: 101 KGILVKIDCPGGEVFEIDRMCATLSFWKKQWGIPVHVFVSGLCASGGYYVACIADKIGTT 160

Query: 125 --------GMRFA--LPNARILLHQPSGGFSGQASD-------IERHAQDIVKIKRRLNE 167
                   G+R          L           A D            ++    ++ + +
Sbjct: 161 SSSLIGSIGVRSGPYFSVKEGLQRHGVETAILTAGDDKAPLNPFSSWTEEEYAERQGIVD 220

Query: 168 IYVK---------NCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            + +             + E++ K L    +  A +A + G+VD +
Sbjct: 221 AFYEQFVDHVVKYRSKLSKEKLTKVLGA-RVFIAKQALEEGLVDAI 265


>gi|302347977|ref|YP_003815615.1| Enoyl-CoA hydratase [Acidilobus saccharovorans 345-15]
 gi|302328389|gb|ADL18584.1| Enoyl-CoA hydratase [Acidilobus saccharovorans 345-15]
          Length = 261

 Score = 39.5 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 60/188 (31%), Gaps = 45/188 (23%)

Query: 28  RGERSYDIYSRLLKE-----RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSP 82
            GE    +   L K      R + +TG      A      +  L  +   +E    I   
Sbjct: 29  NGEMWDSLARELEKGCATDLRSILLTGSEVAFSAGDDIDAMSRLSTQRESEEFFNRI--- 85

Query: 83  GGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE-----KGMRFALPNARILL 137
                  + +  TM     PI     G AA  G+ LL A +     +    + P   + L
Sbjct: 86  -------LDVVTTMIKCNKPIVCAVKGLAAGGGAELLLACDVVVAAENAWISFPEVALGL 138

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
             P     G  +        +   K R    Y+   G+              +SA+EA  
Sbjct: 139 LPPFLLSLGVTA--------LGHRKAR----YLAMTGQR-------------LSATEASL 173

Query: 198 WGVVDKVL 205
            G+VD+V+
Sbjct: 174 LGIVDEVV 181


>gi|271500691|ref|YP_003333716.1| signal peptide peptidase SppA, 67K type [Dickeya dadantii Ech586]
 gi|270344246|gb|ACZ77011.1| signal peptide peptidase SppA, 67K type [Dickeya dadantii Ech586]
          Length = 616

 Score = 39.5 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 5/81 (6%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM---QFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I   +   +    P+     G AA
Sbjct: 347 GDTTAAQIRDARLDPKVKAIILRVNSPGGSVTASELIRSELMAARQAGKPVIVSMGGMAA 406

Query: 113 SMGSLLLSAGEKGMRFALPNA 133
           S G  + +        A PN 
Sbjct: 407 SGGYWISTPANTI--IASPNT 425


>gi|301311154|ref|ZP_07217082.1| serine protease, ClpP class [Bacteroides sp. 20_3]
 gi|300830728|gb|EFK61370.1| serine protease, ClpP class [Bacteroides sp. 20_3]
          Length = 459

 Score = 39.5 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 58/154 (37%), Gaps = 23/154 (14%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR------- 127
           I L++N+ GG++ +  ++   + +   P+  F    AAS G+L+  A +K          
Sbjct: 61  ILLHMNTYGGLLESADSMRTAILYSPIPVYVFIDNNAASAGALISIACKKIYMRKGANIG 120

Query: 128 ---------FALPNAR--ILLHQPSGGFSGQASD-IERHAQDIVKIKRRLNEIYVKNCGK 175
                     ALP+     +          Q  D + ++   I K KR  + +  +    
Sbjct: 121 AATVVNQTGAALPDKYQSYMRSMIRSTAEAQGKDTLIQNGDTIYKWKR--DPLIAEAMVD 178

Query: 176 TYEEVEKTLDRDHIMSA--SEACDWGVVDKVLMS 207
               V   +D   +++    EA  WG  D +  S
Sbjct: 179 DRVIVPNLIDSGKVLTLTYQEALKWGYCDGIAES 212


>gi|206900534|ref|YP_002251048.1| periplasmic serine protease [Dictyoglomus thermophilum H-6-12]
 gi|206739637|gb|ACI18695.1| periplasmic serine protease [Dictyoglomus thermophilum H-6-12]
          Length = 281

 Score = 39.5 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
           + +   I    +  +   L  +        I L +++PGG+V A   I   ++  K  ++
Sbjct: 59  IPIARYINIEDSEEV---LRAIRLTPEDMPIDLILHTPGGLVLAAEQIAHALKNHKGKVT 115

Query: 105 TFCMGQAASMGSLLLSAGEKGMR 127
            F    A S G+ +  A ++ + 
Sbjct: 116 VFVPHYAMSGGTFIALAADEIVM 138


>gi|328948927|ref|YP_004366264.1| signal peptide peptidase SppA, 36K type [Treponema succinifaciens
           DSM 2489]
 gi|328449251|gb|AEB14967.1| signal peptide peptidase SppA, 36K type [Treponema succinifaciens
           DSM 2489]
          Length = 343

 Score = 39.5 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 71/179 (39%), Gaps = 34/179 (18%)

Query: 59  ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP----PISTFCMGQAASM 114
           I + +  L+ +   + I L INSPGG V     ++  ++  K     P+  +    AAS 
Sbjct: 95  ILSTIENLQEDTNNRGIVLVINSPGGGVYQADEVFLALEKYKKKTERPVYAYFTSLAASG 154

Query: 115 GSLLLSAGEKGM--RFALPNAR---------------------ILLHQPSGGFSGQASD- 150
           G  +  A +  M  R +L  +                        +H       G  ++ 
Sbjct: 155 GYYVGCAADYIMANRNSLTGSIGVIAGQFTDLTGLMEKWGIKSTTIHSGRNKLMGNFNEP 214

Query: 151 IERHAQDIVK-----IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           + +  Q+I++        +  +I  ++ G + EEV K  D   I +AS+A +  +++ +
Sbjct: 215 MTQEQQEIMQSIADECYEQFTDIVAESRGLSKEEVYKLAD-GRIYTASQAKEASLINSI 272


>gi|254523187|ref|ZP_05135242.1| signal peptide peptidase SppA, 67K type [Stenotrophomonas sp.
           SKA14]
 gi|219720778|gb|EED39303.1| signal peptide peptidase SppA, 67K type [Stenotrophomonas sp.
           SKA14]
          Length = 663

 Score = 39.5 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 60/165 (36%), Gaps = 32/165 (19%)

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYD---TMQFIKPPISTFCMGQAASMGSLLLSA---- 121
           +   K + L ++SPGG V A   I      +Q    P+       AAS G  +       
Sbjct: 400 DENVKAVVLRVDSPGGEVFASEQIRREVVALQAAGKPVVVSMGDLAASGGYWISMNADRI 459

Query: 122 --------GEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK---------IKRR 164
                   G  G+   +PN    L +      G  +     A D+ +         I+  
Sbjct: 460 YADPSTITGSIGIFGMVPNFSRALDKIGVHTDGVGTTRFAGAFDVTRPMDPAVGQVIQTV 519

Query: 165 LNEIYVKNCG-------KTYEEVEKTLDRDHIMSASEACDWGVVD 202
           +N+ Y    G       K  E V++ + R  + S ++A + G+VD
Sbjct: 520 INKGYADFTGRVADARKKPVEAVDE-VARGRVWSGAQAKERGLVD 563


>gi|167764531|ref|ZP_02436652.1| hypothetical protein BACSTE_02920 [Bacteroides stercoris ATCC
           43183]
 gi|167697200|gb|EDS13779.1| hypothetical protein BACSTE_02920 [Bacteroides stercoris ATCC
           43183]
          Length = 540

 Score = 39.5 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 64/178 (35%), Gaps = 31/178 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP--PISTFCMGQAAS 113
           +  +   L  L+     K + L +NSPGG       I+  +  +K   P+       AAS
Sbjct: 281 SEKVIKDLRKLKDNENVKAVVLRVNSPGGSAYGSEQIWYAVNQLKKEKPVIVSMGDYAAS 340

Query: 114 MGSLLLSA------------GEKGMRFALPNARILL-----------HQPSGGFSGQASD 150
            G  +               G  G+   +PNA+ L              P   F      
Sbjct: 341 GGYYISCNADTIVAEPTTLTGSIGIFGMMPNAKGLTEKLGVNFDVVKTNPYADFGNLTRP 400

Query: 151 IERHAQDIVKIK-RRLNEIYVKNC----GKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
           +    + ++++      E+++  C    G + EE++K        + S A + G+VD+
Sbjct: 401 MNDGEKGLMQMYVNNGYELFLTRCSDGRGISMEELDKIAQGRVW-TGSTAKELGLVDE 457


>gi|205352978|ref|YP_002226779.1| protease 4 [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|205272759|emb|CAR37677.1| protease IV [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|326628052|gb|EGE34395.1| protease 4 [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 9]
          Length = 618

 Score = 39.5 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 55/177 (31%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI---KPPISTFCMGQAA 112
                +Q+     +   K I L +NSPGG V A   I   +        P+     G AA
Sbjct: 349 GDTTASQIRDARLDPKVKTIVLRVNSPGGSVNASEVIRAELAAARAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DI----- 151
           S G  + +             G  G+   +      L        G ++    DI     
Sbjct: 409 SGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLSSIGVHSDGVSTSPLADISMTKA 468

Query: 152 ------ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
                 +     I    +R   +      +T E+++K        +  +A   G+VD
Sbjct: 469 LSPEVQQMMQLSIEYGYKRFITLVADARKRTPEQIDKIAQGHVW-TGEDAKANGLVD 524


>gi|169829578|ref|YP_001699736.1| putative signal peptide peptidase sppA [Lysinibacillus sphaericus
           C3-41]
 gi|168994066|gb|ACA41606.1| Putative signal peptide peptidase sppA [Lysinibacillus sphaericus
           C3-41]
          Length = 337

 Score = 39.5 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 67/175 (38%), Gaps = 33/175 (18%)

Query: 62  QLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP----PISTFCMGQAASMGSL 117
           QL  +  ++  + I L +NSPGG V     IY  +  IK     PI       AAS G  
Sbjct: 93  QLDSILYDDTIEGIVLSVNSPGGGVKESAEIYKKLLKIKEERQIPIYVSMDSMAASGGYY 152

Query: 118 LLSAGEK--GMRFALPNARILLHQP--------------SGGFSGQASDI-----ERHAQ 156
           + +  +K    R  +  +  ++ Q                   SG+  D+     +   +
Sbjct: 153 ISAPADKIFAHRDTITGSIGVIMQSINYQALAEKVGVKFETFKSGEHKDMLSPMRDVTPE 212

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD-------HIMSASEACDWGVVDKV 204
           +   ++  +NE Y +      E+     + D        I+  ++A + G+VD++
Sbjct: 213 ERAMMQDMINETYEEFVDI-VEQGRNMSEADVKKVADGRILGGTKALEAGLVDEI 266


>gi|149175995|ref|ZP_01854612.1| SppA [Planctomyces maris DSM 8797]
 gi|148845149|gb|EDL59495.1| SppA [Planctomyces maris DSM 8797]
          Length = 343

 Score = 39.5 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 71/198 (35%), Gaps = 35/198 (17%)

Query: 41  KERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ--F 98
           K  I+ +TG I       I   +     +   K I L I+SPGG+V     IY  +    
Sbjct: 75  KIAIISITGTIMPPFTERILESIKTAHEDKQVKGILLEIDSPGGLVADSHQIYHRLVELR 134

Query: 99  IKPPISTFCMGQAASMGSLLLS-AGEKGMRFALPNARILLHQ---PSGGFSGQASDI--- 151
            K PI       AAS G  +   AGE+G+ FA P           P    SG A  +   
Sbjct: 135 KKKPIVVSMKRMAASGGYYVAMGAGEEGVIFAEPTTWTGSLGVIIPRFDLSGLAEKVGVV 194

Query: 152 -----------------ERHAQDIVKIKRRLNEIYVKNCG--------KTYEEVEKTLDR 186
                            E   ++       L+E Y +             YE+V+K    
Sbjct: 195 SDPLKTGEFKDALNPFREMTQRERDIWDHILDESYQRFLNIITDNRKDLDYEQVKKLATG 254

Query: 187 DHIMSASEACDWGVVDKV 204
                A++A + G++D++
Sbjct: 255 QIY-PATDARENGLIDEI 271


>gi|16079593|ref|NP_390417.1| membrane bound hydrolase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221310464|ref|ZP_03592311.1| hypothetical protein Bsubs1_13886 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221314787|ref|ZP_03596592.1| hypothetical protein BsubsN3_13802 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319710|ref|ZP_03601004.1| hypothetical protein BsubsJ_13723 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323987|ref|ZP_03605281.1| hypothetical protein BsubsS_13857 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|1730993|sp|P54465|YQEZ_BACSU RecName: Full=Uncharacterized protein yqeZ
 gi|1303816|dbj|BAA12472.1| YqeZ [Bacillus subtilis]
 gi|2634985|emb|CAB14481.1| putative membrane bound hydrolase [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 437

 Score = 39.5 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 39/90 (43%), Gaps = 3/90 (3%)

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           ++ L    +     I L IN+PGG+V + + + D +   + P++ +   +A S G+ +  
Sbjct: 51  SRSLQDAKDAHADHIILDINTPGGLVKSAIDMADLITESEIPVTAYVNKRALSAGAYIAL 110

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASD 150
             +    +  P  ++          G A+D
Sbjct: 111 QADHI--YMAPGGKMGAA-AIVDGQGNAAD 137


>gi|282164165|ref|YP_003356550.1| putative signal peptide peptidase [Methanocella paludicola SANAE]
 gi|282156479|dbj|BAI61567.1| putative signal peptide peptidase [Methanocella paludicola SANAE]
          Length = 293

 Score = 39.5 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 57/183 (31%), Gaps = 31/183 (16%)

Query: 52  EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP--PISTFCMG 109
               ++ I   +     +   K I L +NSPGG   A   I   +   K   P+      
Sbjct: 81  GSAFSSDIVKCMRAATDDPEVKAIVLRVNSPGGTPVAAEEIISQINRTKAVKPVVISMGD 140

Query: 110 QAASMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFS----GQASDIER 153
            A S    + S             G  G+ +   N      +          G   D+  
Sbjct: 141 MATSAAYYISSQANRIVANPDTFTGSIGVIWTFKNKSKAYDELGVTVYVAKSGNFKDMGS 200

Query: 154 HAQDIV-----KIKRRLNEIY-------VKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
             + +       +   +NE Y        K    + ++V++  D   I + + A   G+V
Sbjct: 201 EWRGLTENEKSYVNAIINESYDRFVTNVAKGRNMSVDKVKEIAD-GRIFTGTTAKGMGLV 259

Query: 202 DKV 204
           D +
Sbjct: 260 DDI 262


>gi|291484986|dbj|BAI86061.1| hypothetical protein BSNT_03783 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 437

 Score = 39.5 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 39/90 (43%), Gaps = 3/90 (3%)

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           ++ L    +     I L IN+PGG+V + + + D +   + P++ +   +A S G+ +  
Sbjct: 51  SRSLQDAKDAHADHIILDINTPGGLVKSAIDMADLITDSEIPVTAYVNKRALSAGAYIAL 110

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASD 150
             +    +  P  ++          G A+D
Sbjct: 111 QADHI--YMAPGGKMGAA-AIVDGQGNAAD 137


>gi|84499786|ref|ZP_00998074.1| peptidase, family S49 [Oceanicola batsensis HTCC2597]
 gi|84392930|gb|EAQ05141.1| peptidase, family S49 [Oceanicola batsensis HTCC2597]
          Length = 285

 Score = 39.5 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 58/160 (36%), Gaps = 33/160 (20%)

Query: 77  LYINSPGGVVTAGMAIYDTMQF----IKPPISTFCMGQAASMGSLLLS------------ 120
           L INSPGG       I   ++        P+  F    AAS G  L              
Sbjct: 74  LAINSPGGSPVQSSLIAARIRRLSEEKSVPVYAFVEDAAASGGYWLACAAEEIHADRSSV 133

Query: 121 AGEKGMRFALPNARILLH----QPSGGFSGQASDIER-----HAQDIVKIKRRLNEIYVK 171
            G  G+  A   A +LL     +     SG++  +         +D+ ++K  L +I+  
Sbjct: 134 VGSIGVIAASFGAHVLLARQGVERRVHTSGKSKSMLDPFQPEKEEDVARLKSLLTDIHAA 193

Query: 172 -------NCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
                  + G   +E E     +  + A +A + G++D V
Sbjct: 194 FIDHVKTHRGGKLKESEDLFTGEFWL-AEKAKELGLIDHV 232


>gi|321312023|ref|YP_004204310.1| putative membrane bound hydrolase [Bacillus subtilis BSn5]
 gi|320018297|gb|ADV93283.1| putative membrane bound hydrolase [Bacillus subtilis BSn5]
          Length = 437

 Score = 39.5 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 39/90 (43%), Gaps = 3/90 (3%)

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           ++ L    +     I L IN+PGG+V + + + D +   + P++ +   +A S G+ +  
Sbjct: 51  SRSLQDAKDAHADHIILDINTPGGLVKSAIDMADLITESEIPVTAYVNKRALSAGAYIAL 110

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASD 150
             +    +  P  ++          G A+D
Sbjct: 111 QADHI--YMAPGGKMGAA-AIVDGQGNAAD 137


>gi|170077749|ref|YP_001734387.1| signal peptide peptidase SppA, 67K type [Synechococcus sp. PCC
           7002]
 gi|169885418|gb|ACA99131.1| signal peptide peptidase SppA, 67K type [Synechococcus sp. PCC
           7002]
          Length = 594

 Score = 39.5 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 66/191 (34%), Gaps = 34/191 (17%)

Query: 46  FVTGQIEDHM--ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--- 100
            V G+          +  QL  L  +   K + L INSPGG   A   I   ++ I+   
Sbjct: 320 IVGGEGTPDTIGGDSLSRQLRELRQDPEVKVVVLRINSPGGSAIASEIILRELKLIREAD 379

Query: 101 PPISTFCMGQAASMGSLLLS------------AGEKGMRFALPNAR-ILLHQPSGGFSGQ 147
            P+       AAS G  + +             G  G+   LPN + I  +      S Q
Sbjct: 380 KPVIVSMGDLAASGGYWIATESDRIFAQPNTITGSIGVFGILPNIQTIGNNNGLTWDSVQ 439

Query: 148 ASDIE--------RHAQDIVKIKRRLNEIYVKNC-------GKTYEEVEKTLDRDHIMSA 192
             ++         +   ++   +  +N+IY K         G T  EV +        S 
Sbjct: 440 TGELANLGTASRPKTEAEMAIFQNFVNDIYGKFLDRVSAARGLTEAEVRQIAQGRVW-SG 498

Query: 193 SEACDWGVVDK 203
            +A    +VD+
Sbjct: 499 EDAQAIRLVDE 509


>gi|269127810|ref|YP_003301180.1| signal peptide peptidase SppA, 67K type [Thermomonospora curvata
           DSM 43183]
 gi|268312768|gb|ACY99142.1| signal peptide peptidase SppA, 67K type [Thermomonospora curvata
           DSM 43183]
          Length = 570

 Score = 39.5 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 56/163 (34%), Gaps = 36/163 (22%)

Query: 73  KEISLYINSPGGVVTAGMAIYD---TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           K I   +NSPGG   A  AI+      +    P+       AAS G  +  A +  +  A
Sbjct: 329 KAIVFRVNSPGGSAVASDAIWREVVLARRAGKPVIVSMGDVAASGGYYVAMAAD--VIVA 386

Query: 130 LPNARIL-------------LHQPSGGFSGQASDIER----------HAQDIVKIKRRLN 166
            P                  L +  G   G  +D E              +  +I   L+
Sbjct: 387 QPGTITGSIGVVTGKAVLSGLLERIGVGMGSVTDGEHALMYSAIKDFSPSEWERINASLD 446

Query: 167 EIYVKNC-------GKTYEEVEKTLDRDHIMSASEACDWGVVD 202
            IY           G +   VE+ L R  + + ++A + G+VD
Sbjct: 447 HIYENFTAKVAEGRGLSRRRVEE-LARGRVWTGADAKEHGLVD 488



 Score = 37.9 bits (87), Expect = 0.87,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)

Query: 163 RRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
           R+L E   +  G T E V + +DR  ++ A+EA + G+VD+ L  R ++
Sbjct: 195 RQLAEGIAQGRGLTVERVRELIDRGPLL-AAEALEAGLVDR-LAYRDEV 241


>gi|329961656|ref|ZP_08299715.1| signal peptide peptidase SppA [Bacteroides fluxus YIT 12057]
 gi|328531648|gb|EGF58482.1| signal peptide peptidase SppA [Bacteroides fluxus YIT 12057]
          Length = 589

 Score = 39.5 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 65/175 (37%), Gaps = 31/175 (17%)

Query: 59  ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP--PISTFCMGQAASMGS 116
           +   L  L+ +   K + L +NSPGG       I+  +  +K   P+       AAS G 
Sbjct: 333 VIKDLRKLKEDENVKAVVLRVNSPGGSAYGSEQIWYAVSELKKEKPVIVSMGDYAASGGY 392

Query: 117 LLLSA------------GEKGMRFALPNARILLHQPSGGF----SGQASDIERHAQDIVK 160
            +               G  G+    PNA+ L  +    F    + Q +D     + +  
Sbjct: 393 YISCNADTIVAEPTTLTGSIGIFGMFPNAKGLTDKIGLNFDVVKTNQYADFGMLTRPMND 452

Query: 161 IKRRLNEIYVK--------NC----GKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            ++ L ++YV          C    G   EE++K        + S A + G+VD+
Sbjct: 453 GEKGLMQMYVNQGYDLFLTRCSDGRGIGKEELDKIAQGRVW-TGSTAKELGLVDE 506


>gi|15678828|ref|NP_275945.1| protease IV [Methanothermobacter thermautotrophicus str. Delta H]
 gi|2621896|gb|AAB85306.1| protease IV [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 287

 Score = 39.5 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 57/159 (35%), Gaps = 25/159 (15%)

Query: 44  IVFVTGQIEDHMA--------TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDT 95
           I+ V G I    A          I   +    ++   K I L INSPGG   A   + D 
Sbjct: 37  IIPVHGAIAYDTAGFSDGVDPDDIKELIAEANSDPSVKAIVLDINSPGGTPVASEELMDA 96

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           +   + P+ ++      S   L  SA ++    A P+A +     S G     +D+ +  
Sbjct: 97  INKSEKPVVSWISDSGTSGAYLAASASDRI--VASPSAWVG----SIGVILDLTDLSQMY 150

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           + +   K      Y    G+      K +  D+ M   E
Sbjct: 151 RQMGINK------YAIKAGE-----YKDMGADYRMITDE 178


>gi|157158760|ref|YP_001463065.1| protease 4 [Escherichia coli E24377A]
 gi|157080790|gb|ABV20498.1| protease 4 [Escherichia coli E24377A]
          Length = 618

 Score = 39.5 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP---ISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I   +   +     +     G AA
Sbjct: 349 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKLVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 409 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 468

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 469 LPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 524


>gi|302390807|ref|YP_003826627.1| signal peptide peptidase SppA, 36K type [Acetohalobium arabaticum
           DSM 5501]
 gi|302202884|gb|ADL11562.1| signal peptide peptidase SppA, 36K type [Acetohalobium arabaticum
           DSM 5501]
          Length = 326

 Score = 39.5 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 71/195 (36%), Gaps = 37/195 (18%)

Query: 45  VFVTGQIE-----DHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI 99
           + V G  E        A+ +  Q+   +     K + L +NSPGG   A   IY  ++  
Sbjct: 54  ISVGGTQEVLSTSQTNASEVIKQINEAKDNKKIKALLLRVNSPGGSSAASDEIYRELKKF 113

Query: 100 K---PPISTFCMGQAASMGSLLLS------------AGEKGMRFALPNARILLH----QP 140
           K    P+       A S G  + +             G  G+     N + L        
Sbjct: 114 KKTGKPVVISMGDIATSGGYYISAIADQIYANPSTITGSIGVIMQFKNLQDLYDKLGVDS 173

Query: 141 SGGFSGQASDI-----ERHAQDIVKIKRRLNEIYVKNC-----GKTY--EEVEKTLDRDH 188
               SG   DI     +  A++   ++  ++E+Y +       G++    +VEK  D   
Sbjct: 174 ITFKSGPYKDIGNPDRKLTAEEKELLQNMVDEVYQEFLTAVAEGRSMSKSKVEKLAD-GR 232

Query: 189 IMSASEACDWGVVDK 203
           I +  +A   G+VD+
Sbjct: 233 IYNGRKAKKLGLVDE 247


>gi|300193454|gb|ADJ68233.1| enoyl CoA hydratase [Anopheles sinensis]
          Length = 278

 Score = 39.5 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 45/128 (35%), Gaps = 20/128 (15%)

Query: 89  GMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQA 148
              + D ++    PI     G AA+ G  L+++ +  M     N+       S G     
Sbjct: 104 CSELIDAIRSAPIPIIAKVDGLAAAAGCQLVASCD--MAICSDNSTFSTPGASFGIFCST 161

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
             I      +V+   R+   Y+   G                SA+EA + G+V KV+   
Sbjct: 162 PGIA-----VVRAVPRMKAAYMLFTGLPI-------------SATEALEAGLVSKVVSKD 203

Query: 209 IDIEEKSK 216
              EE  K
Sbjct: 204 SLDEELDK 211


>gi|254470780|ref|ZP_05084183.1| protease IV [Pseudovibrio sp. JE062]
 gi|211959922|gb|EEA95119.1| protease IV [Pseudovibrio sp. JE062]
          Length = 302

 Score = 39.5 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 65/181 (35%), Gaps = 44/181 (24%)

Query: 62  QLLFLEAENPQ---KEISLYINSPGGVVTAGMAIYDTMQFI--KPPISTFCMGQAASMG- 115
           QL  LEA       + + + INSPGG  + G A+Y+ ++ I  K P++       AS   
Sbjct: 35  QLEMLEAIAKDDTVQGVIVSINSPGGTTSGGEALYNALRKIAEKKPVTASITTLGASAAY 94

Query: 116 -SLLLSAGEKGMRFALPNARILLHQPSGGFSGQASD-IERHAQDIV-------------- 159
            S + S        +L  +  +L Q      G A   +++   ++               
Sbjct: 95  LSAIASDHLVAQYTSLTGSIGVLFQ-----YGNAKGLLDKIGVEMDAIKSAPLKAEPNFY 149

Query: 160 -----KIKRRLNEIY-----------VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
                ++K  L +I             +  G + E   +  +     +  +A    ++D+
Sbjct: 150 EPATPEVKEALQDIIDDTYMWFVGLVAERRGLSQERALQLANGQVY-TGHQAKGLELIDE 208

Query: 204 V 204
           +
Sbjct: 209 I 209


>gi|325269104|ref|ZP_08135724.1| signal peptide peptidase SppA [Prevotella multiformis DSM 16608]
 gi|324988491|gb|EGC20454.1| signal peptide peptidase SppA [Prevotella multiformis DSM 16608]
          Length = 592

 Score = 39.1 bits (90), Expect = 0.37,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 61/184 (33%), Gaps = 42/184 (22%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF--IKPPISTFCMGQAAS 113
           A  +C  L  L  +   K + L +NS GG   A   I+  +     K P+     G AAS
Sbjct: 332 AQKVCKDLEELAEDKEIKAVVLRVNSGGGSAYASEQIWHQIMELKKKKPVVVSMGGMAAS 391

Query: 114 MGSLLLSA------------GEKGMRFALPNARILLHQPSGG------------FSGQAS 149
               + +             G  G+    P+A  L  +  G             F  QA 
Sbjct: 392 GAYYMSAPADWIVAEPTTLTGSIGIFGMFPDASSLFAEKLGVRFDEVKTNKYAGFGTQAR 451

Query: 150 DIERHAQDIVKIKRRLNEIYV----------KNCGKTYEEVEKTLDRDHIMSASEACDWG 199
                  ++  + + +N  Y           K      E++ +     H+ +  +A   G
Sbjct: 452 PF--TEDEMAYLTQYVNRGYRLFRHRVAEGRKMTDSQVEKIAQ----GHVYTGQDAQKIG 505

Query: 200 VVDK 203
           +VD+
Sbjct: 506 LVDQ 509


>gi|307942848|ref|ZP_07658193.1| proteinase IV protein [Roseibium sp. TrichSKD4]
 gi|307773644|gb|EFO32860.1| proteinase IV protein [Roseibium sp. TrichSKD4]
          Length = 335

 Score = 39.1 bits (90), Expect = 0.37,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 58  LICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI--KPPISTFCMGQAASMG 115
            +  ++  +   +P K + + INSPGG  T G AIY  ++ +    P+ +    + AS G
Sbjct: 67  ELLQRIERIREHDPVKGVIVAINSPGGSTTGGEAIYSALRKLAEDKPVVSEIRTEGASAG 126

Query: 116 SLLLSAGE 123
            ++  AG+
Sbjct: 127 YMIAMAGD 134


>gi|239828047|ref|YP_002950671.1| signal peptide peptidase SppA, 36K type [Geobacillus sp. WCH70]
 gi|239808340|gb|ACS25405.1| signal peptide peptidase SppA, 36K type [Geobacillus sp. WCH70]
          Length = 336

 Score = 39.1 bits (90), Expect = 0.38,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 62/165 (37%), Gaps = 37/165 (22%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTM----QFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           K I L +NSPGG V     I+D +    +  K PI       AAS G  + +AG+K   F
Sbjct: 105 KAIVLRVNSPGGGVVESAEIHDQLLELKKETKKPIYVSMGSMAASGGYYISTAGDKI--F 162

Query: 129 ALPNARI----LLHQPSGG--------------FSGQASDIERHAQDIVKIKRRLNEIYV 170
           A P        ++ Q                   SG   DI   A+ + + ++ + +  +
Sbjct: 163 ASPETITGSLGVIMQSLNYEGLAKKYGVELVTIKSGPYKDIMNPARKMTEEEKEILQQLI 222

Query: 171 KNC----------GK--TYEEVEKTLDRDHIMSASEACDWGVVDK 203
           +N           G+     EV K  D   I    +A    ++D+
Sbjct: 223 RNSYEGFVKVISEGRHLPESEVRKIAD-GRIYDGRQAKQLKLIDE 266


>gi|78222959|ref|YP_384706.1| signal peptide peptidase A [Geobacter metallireducens GS-15]
 gi|78194214|gb|ABB31981.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49
           [Geobacter metallireducens GS-15]
          Length = 301

 Score = 39.1 bits (90), Expect = 0.39,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 56/150 (37%), Gaps = 19/150 (12%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMG 115
           +  I  QL  +  +   K + L I SPGGV+     IY+ ++ +             SMG
Sbjct: 55  SEEIVKQLSEMRKKTNVKAVVLRIESPGGVIGPSQEIYEAVKKLAKTKKVVV-----SMG 109

Query: 116 SLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK 175
           S+  S G      A+P A I  +   G  +G    + + A     + +   + +    GK
Sbjct: 110 SVAASGGYH---IAIPAAVIYANP--GTITGSIGVLMKLANVEGLMDKVGMKAFTLKSGK 164

Query: 176 TYEE---VEKTLDRDHIMSASEACDWGVVD 202
             +    V    D D       A   GV+D
Sbjct: 165 FKDAGSPVRALTDEDR------ALLQGVID 188


>gi|296168419|ref|ZP_06850299.1| enoyl-CoA hydratase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295896713|gb|EFG76348.1| enoyl-CoA hydratase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 231

 Score = 39.1 bits (90), Expect = 0.39,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 39/110 (35%), Gaps = 19/110 (17%)

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           +     P+   C G A +MG+ LL +G+   R A     I   Q +    G    I   A
Sbjct: 89  LLSHPKPVVMACTGHAIAMGAFLLCSGDH--RVAAHAYNI---QANEVAIGMV--IPYAA 141

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            +I+K++      Y +  G                    A   G VD+++
Sbjct: 142 LEIMKLRLT-RSAYQQAAGLAK----------TFF-GETALAAGFVDEIV 179


>gi|269839326|ref|YP_003324018.1| hypothetical protein Tter_2297 [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269791056|gb|ACZ43196.1| protein of unknown function DUF114 [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 286

 Score = 39.1 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 59/154 (38%), Gaps = 31/154 (20%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNA 133
            I + +++PGG+V A   I   ++     ++ F    A S G+L+  A ++      P+A
Sbjct: 83  PIDMILHTPGGLVIAAEQIARALKAHPAKVTVFVPHYAMSGGTLIALAADEI--VMGPHA 140

Query: 134 ------------------RILLHQPSGGFSGQA---SDIERHAQDIVKIKRRLNEIYVKN 172
                             +++  +P      Q    +D+ R A  + ++++ + E+    
Sbjct: 141 VLGPVDPQLGEYPAASILKVVEQKPLAEVDDQTIILADVARKA--MGQVRQTVLELLGDK 198

Query: 173 CGKTYEEVEKTL------DRDHIMSASEACDWGV 200
             +   +    L        D+ ++  EA   G+
Sbjct: 199 MPQDRAQALADLLSSGHWTHDYPITVEEARSMGL 232


>gi|121534809|ref|ZP_01666629.1| protein of unknown function DUF107 [Thermosinus carboxydivorans
           Nor1]
 gi|121306604|gb|EAX47526.1| protein of unknown function DUF107 [Thermosinus carboxydivorans
           Nor1]
          Length = 436

 Score = 39.1 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 62/173 (35%), Gaps = 18/173 (10%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPI 103
           ++ + G+I    A  +  ++L   +    + + + I++ GG+V   +AI D +     P 
Sbjct: 34  LIPIKGEINGSQA-ALVRRVLTEASAQKAQAVLIEIDTFGGLVDPAVAIRDIIIDYPLPT 92

Query: 104 STFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI--ERHAQDIVKI 161
             +   +A S G+L+  A +       P   +   +P        + +  E  A    + 
Sbjct: 93  ICYVKNRAWSAGALIALAHKHI--VIAPGGSLGAAEPIPATEKTIAALKAEFAATANKRG 150

Query: 162 KR-RLNEIYVKNC-GKT----YEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208
           +  R+ E  V    G        ++    D        +A   G  D V   R
Sbjct: 151 RDPRIAEAMVDKTLGLPGYAQPGQILALTD-------YQAQQVGYADLVAPDR 196


>gi|147868|gb|AAA24648.1| protease IV [Escherichia coli]
          Length = 618

 Score = 39.1 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P+     G AA
Sbjct: 349 GDTTAAQIRDARLDPKVKAIVLRVNSPGGTVTASEVIRAELAAARAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 409 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 468

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 469 LPPEAQLMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 524


>gi|95929491|ref|ZP_01312234.1| signal peptide peptidase SppA, 36K type [Desulfuromonas acetoxidans
           DSM 684]
 gi|95134607|gb|EAT16263.1| signal peptide peptidase SppA, 36K type [Desulfuromonas acetoxidans
           DSM 684]
          Length = 298

 Score = 39.1 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 62/177 (35%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP--PISTFCMGQAAS 113
           +  I  QL+     +  K I L ++SPGG V     IYD +  +    P+       AAS
Sbjct: 55  SKAIVDQLIDFGQNHAVKAIVLRVDSPGGGVGPSQEIYDEVVRLTALKPVVVSMGSVAAS 114

Query: 114 MGSLLLSA------------GEKGMRFALPNARILLHQPSGGF----SGQASDIERHAQD 157
            G  + +             G  G+     N   L+ +         SG   DI    + 
Sbjct: 115 GGYYISAPANRIFANSGTITGSIGVIMEFTNVIALMDKVGLKTNVIKSGDHKDIGSSVRA 174

Query: 158 IVKIKRRLNEIY----------VKNCGKTYEE--VEKTLDRDHIMSASEACDWGVVD 202
           +   ++ L +              + G+  E+  V K  D   I +  +A   G+VD
Sbjct: 175 MTDQEKALLQSLIDDVHDQFVTAVSEGRHLEKDQVFKLAD-GRIFTGRQAQQQGLVD 230


>gi|59897180|gb|AAX11975.1| putative Clp protease [Enterobacteria phage T5]
          Length = 199

 Score = 39.1 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 3/107 (2%)

Query: 64  LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           + L   N   EI+L IN PGG V     + + +   +  +    +G +AS    +  +  
Sbjct: 40  MVLMQANEDDEINLMINGPGGYVDTAAQLSNLIANCRGTVIGHLIGPSASAYCTIFLSCH 99

Query: 124 KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK-IKRRLNEIY 169
             +    P+A ++ H  SGGF  +  +I++  +   K +K  + ++Y
Sbjct: 100 GWVVH--PHATLMGHTFSGGFCEKGQEIKKAYESYNKFVKNMMLDVY 144


>gi|256018039|ref|ZP_05431904.1| protease 4 [Shigella sp. D9]
 gi|332101431|gb|EGJ04777.1| protease IV (signal peptide peptidase) [Shigella sp. D9]
          Length = 618

 Score = 39.1 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 58/177 (32%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I       +    P      G AA
Sbjct: 349 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPAVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIER--- 153
           S G  + +             G  G+   +      L        G ++    D+     
Sbjct: 409 SGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 468

Query: 154 ---HAQDIVKI-----KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
               AQ ++++      +R   +       T E+++K        +  +A   G+VD
Sbjct: 469 LPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVD 524


>gi|242277502|ref|YP_002989631.1| signal peptide peptidase SppA, 36K type [Desulfovibrio salexigens
           DSM 2638]
 gi|242120396|gb|ACS78092.1| signal peptide peptidase SppA, 36K type [Desulfovibrio salexigens
           DSM 2638]
          Length = 322

 Score = 39.1 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 14/86 (16%)

Query: 58  LICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK----PPISTFCMGQAAS 113
            + ++L     ++  K + L INSPGG VTA   +Y+ +   K      +    M  AAS
Sbjct: 73  EVSSRLKLAAEDDKIKALVLKINSPGGSVTASDILYNEIVRFKEKTGAKVIVNMMDVAAS 132

Query: 114 MGSLLLSAGEKGMRFALPNARILLHQ 139
                      G   +LP   I+ H 
Sbjct: 133 ----------GGYYVSLPADHIMAHP 148


>gi|37526445|ref|NP_929789.1| protease 4 [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36785876|emb|CAE14927.1| protease IV (endopeptidase IV) (signal peptide peptidase)
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 621

 Score = 39.1 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 3/77 (3%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD---TMQFIKPPIST 105
                       AQ+     ++  K + L +NSPGG V+A   I      ++    P+  
Sbjct: 345 QTQGMVGGDTTAAQIRQARLDDNIKAVILRVNSPGGSVSASDVIRTELAALRATNKPVVV 404

Query: 106 FCMGQAASMGSLLLSAG 122
              G AAS G  + +  
Sbjct: 405 SMGGMAASGGYWIATPA 421


>gi|254293569|ref|YP_003059592.1| signal peptide peptidase SppA, 36K type [Hirschia baltica ATCC
           49814]
 gi|254042100|gb|ACT58895.1| signal peptide peptidase SppA, 36K type [Hirschia baltica ATCC
           49814]
          Length = 590

 Score = 39.1 bits (90), Expect = 0.43,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 66/195 (33%), Gaps = 40/195 (20%)

Query: 48  TGQIEDHMATLICA------QLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF--- 98
            G I +  A  I A      Q+     +   K I   ++S GG  TA   I++ +++   
Sbjct: 308 GGDIFNPNAEQIIASDTVSSQIYDAGKDESIKAIVFRVDSGGGSPTASDQIWNAIEYVQN 367

Query: 99  -IKPPISTFCMGQAASMGSLLLSAGEK---------------GMRFALPN--ARILLHQP 140
               P+       AAS G  +    +K               G +FAL     +I ++  
Sbjct: 368 TYNKPVVISMGSVAASGGYYISMGADKIYANRATITGSIGVYGGKFALAEGLRKIGVNPS 427

Query: 141 SGGFSGQASDIERHAQDIVK-----IKRRLNEIYVKNC-------GKTYEEVEKTLDRDH 188
                G  + I    + + +     ++  L   Y +         G + E + +      
Sbjct: 428 RIDVGGPYASIYTSTERLSEQQRATMRASLARTYDRFTRLAADGRGMSQEALHEIAKGRV 487

Query: 189 IMSASEACDWGVVDK 203
             +   A + G+VD+
Sbjct: 488 W-TGVAAKENGLVDE 501


>gi|251771849|gb|EES52423.1| signal peptide peptidase SppA, 36K type [Leptospirillum
           ferrodiazotrophum]
          Length = 334

 Score = 39.1 bits (90), Expect = 0.43,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 76/204 (37%), Gaps = 44/204 (21%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKE-----ISLYINSPGGVVTAGMAIYDTM-- 96
              + G+ +         +LL  E E  +++     I L I+SPGG VTA   +Y  +  
Sbjct: 72  TPLLGGKTDQV-------RLLDRELEKARRDPHVRAIVLDIDSPGGSVTASDRLYHKILL 124

Query: 97  --QFIKPPISTFCMGQAAS------------MGSLLLSAGEKGMRFALPNARILLHQP-- 140
             Q  K P+  F     AS                    G  G+  A      L+ +   
Sbjct: 125 FRQRTKIPVIAFFGDLGASGAYYTAMGADEVWARPTSVVGSIGVMIANVGVEGLMKKVGV 184

Query: 141 --SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT-YEEVEK--TLDRDH------- 188
                 SG   ++    +++    RR+ E  V +   T  E VE+   ++ +H       
Sbjct: 185 TDRTVASGAEKEMGSPFREMTPEDRRIFEGLVADFYATFLEVVERGRRMEANHLRPLADG 244

Query: 189 -IMSASEACDWGVVDKVLMSRIDI 211
            + +A +A   G++D+V   R D+
Sbjct: 245 RVFTARQALADGLLDRV-GYRSDL 267


>gi|149913315|ref|ZP_01901848.1| Peptidase U7 [Roseobacter sp. AzwK-3b]
 gi|149812435|gb|EDM72264.1| Peptidase U7 [Roseobacter sp. AzwK-3b]
          Length = 474

 Score = 39.1 bits (90), Expect = 0.43,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 67/212 (31%), Gaps = 54/212 (25%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           S +L  R  ++           I AQ+     +   + ++L I+S GG V     + D +
Sbjct: 88  SGVLIHRGGWIGQSSGQTSYEGIAAQIEAAARDPSVRAVALEIDSFGGEVAGVFDLADRL 147

Query: 97  QFIK--PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           + ++   P+  F    A S G  L S  +   R  L         P  G  G    +  H
Sbjct: 148 RALRRNKPVWAFVAEHAFSAGYALASQAD---RILL---------PRTGAVGSIGVVVMH 195

Query: 155 AQDIVKIKRRLNEIYVKNCGKT----------YEEVEKTLDRD----HIMSAS------- 193
           A    ++ +    + + + G+            E V   + R+      + A        
Sbjct: 196 ADLSSQLDQNGVRVTLIHSGQHKVDGNPYEPLPESVRDDIQREIDVLRFLFAETVAAGRS 255

Query: 194 -------------------EACDWGVVDKVLM 206
                              +A   G+ D+V+ 
Sbjct: 256 GRLNQDAALATEAATFRGADAVSAGLADEVID 287


>gi|319651852|ref|ZP_08005977.1| signal peptide peptidase [Bacillus sp. 2_A_57_CT2]
 gi|317396504|gb|EFV77217.1| signal peptide peptidase [Bacillus sp. 2_A_57_CT2]
          Length = 336

 Score = 39.1 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 62/177 (35%), Gaps = 40/177 (22%)

Query: 63  LLFLEAENPQ---KEISLYINSPGGVVTAGMAIYDTM----QFIKPPISTFCMGQAASMG 115
           +  LE        K I + +NSPGG V     I+D +    +  K P+       AAS G
Sbjct: 92  MDNLEYVKEDGTVKAIVIKVNSPGGGVVESAEIHDKIIEIQKETKKPVYISMGSMAASGG 151

Query: 116 SLLLSAGEKGMRFALPNARI----LLHQPSGGFS--------------GQASDIERHAQD 157
             + +  +K   FA P        ++ Q                    G   DI    +D
Sbjct: 152 YYISAPADKI--FASPETMTGSLGVIMQGYNYAGLAEKYGVEFVTIKSGPYKDIMSPTRD 209

Query: 158 IVKIKRRLNEIYVKNC------------GKTYEEVEKTLDRDHIMSASEACDWGVVD 202
           +   +R++ +  + N             G T  +V++  D   I    +A +  ++D
Sbjct: 210 MTDEERKILQSMIDNSYAGFVKVISEGRGLTEAQVKEIAD-GRIYDGRQAKELNLID 265


>gi|32490856|ref|NP_871110.1| protease 4 [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
 gi|25166062|dbj|BAC24253.1| sppA [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 615

 Score = 39.1 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 67/190 (35%), Gaps = 31/190 (16%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY---DTMQFIK 100
           I+    +        I  Q+     +   K + + INSPGG V A   I    D  + + 
Sbjct: 335 IINGPDKPGFSSGDFIAYQIKQARLDPNIKSLVVRINSPGGSVNASEIIRSELDATKNMG 394

Query: 101 PPISTFCMGQAASMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQA 148
            P+     G AAS G  + +             G  G+   +      L        G +
Sbjct: 395 KPVVVSMGGIAASGGYWISTPANYIISNPDTLTGSIGIFGIINTIESTLESIGIYSDGVS 454

Query: 149 S----DIERH----AQDIVKIKRRLNEIY-------VKNCGKTYEEVEKTLDRDHIMSAS 193
           +    +I       ++ + K+K  +   Y        K+  KT +EV+K       +  +
Sbjct: 455 TSPLANINIAKKLPSEFLEKMKLIIENGYYNFLSLVSKSRNKTIKEVDKIGQGHVWI-GT 513

Query: 194 EACDWGVVDK 203
           +A   G+VDK
Sbjct: 514 DALKKGLVDK 523


>gi|289548168|ref|YP_003473156.1| hypothetical protein Thal_0394 [Thermocrinis albus DSM 14484]
 gi|289181785|gb|ADC89029.1| protein of unknown function DUF107 [Thermocrinis albus DSM 14484]
          Length = 423

 Score = 39.1 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 57/149 (38%), Gaps = 8/149 (5%)

Query: 67  EAENPQKEIS-LYINSPGGVVTAGMAIYDTMQFIKPPISTFCM---GQAASMGSLLLSAG 122
           EAE    +I  L +N+PGG+ T+   I   ++     +  +     G+AAS G+++ +  
Sbjct: 41  EAEEGSFQIFVLKLNTPGGLETSMRKILQEIEKTPVVVVVYVYPPGGRAASAGAIITTFA 100

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
           +       P   I    P     G   D     + +  +         +  G+    +E+
Sbjct: 101 DVA--AMAPGTNIGAAHPV-QMGGDGEDKTLKEKALQDMLA-FVRSMSQKKGRNATVLER 156

Query: 183 TLDRDHIMSASEACDWGVVDKVLMSRIDI 211
            +     ++  EA   GV+D +     ++
Sbjct: 157 MVKESLALTPQEALREGVIDLIASDEKEL 185


>gi|62179887|ref|YP_216304.1| protease 4 [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|62127520|gb|AAX65223.1| protease IV, a signal peptide peptidase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
          Length = 618

 Score = 39.1 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 55/177 (31%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI---KPPISTFCMGQAA 112
                +Q+     +   K I L +NSPGG V A   I   +        P+     G AA
Sbjct: 349 GDTTASQIRDARLDPKVKAIVLRVNSPGGSVNASEVIRAELAAARAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DI----- 151
           S G  + +             G  G+   +      L        G ++    DI     
Sbjct: 409 SGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLSSIGVHSDGVSTSPLADISMTKA 468

Query: 152 ------ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
                 +     I    +R   +      +T E+++K        +  +A   G+VD
Sbjct: 469 LSPEVQQMMQLSIEYGYKRFITLVADARKRTPEQIDKIAQGHVW-TGEDAKANGLVD 524


>gi|322616683|gb|EFY13592.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315996572]
 gi|322619801|gb|EFY16675.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-1]
 gi|322622369|gb|EFY19214.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-3]
 gi|322627893|gb|EFY24683.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-4]
 gi|322633009|gb|EFY29752.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-1]
 gi|322636745|gb|EFY33448.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-2]
 gi|322641229|gb|EFY37870.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. 531954]
 gi|322645218|gb|EFY41747.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. NC_MB110209-0054]
 gi|322650160|gb|EFY46574.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. OH_2009072675]
 gi|322655734|gb|EFY52036.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. CASC_09SCPH15965]
 gi|322660059|gb|EFY56298.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. 19N]
 gi|322665374|gb|EFY61562.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. 81038-01]
 gi|322669639|gb|EFY65786.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. MD_MDA09249507]
 gi|322673558|gb|EFY69660.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. 414877]
 gi|322677484|gb|EFY73548.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. 366867]
 gi|322679851|gb|EFY75890.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. 413180]
 gi|322687323|gb|EFY83295.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. 446600]
 gi|323192441|gb|EFZ77671.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609458-1]
 gi|323199518|gb|EFZ84611.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556150-1]
 gi|323204132|gb|EFZ89146.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609460]
 gi|323208750|gb|EFZ93688.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. 507440-20]
 gi|323210920|gb|EFZ95784.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556152]
 gi|323217726|gb|EGA02441.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB101509-0077]
 gi|323220281|gb|EGA04736.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB102109-0047]
 gi|323223877|gb|EGA08177.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB110209-0055]
 gi|323229529|gb|EGA13652.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB111609-0052]
 gi|323232752|gb|EGA16848.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009083312]
 gi|323240209|gb|EGA24253.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009085258]
 gi|323242803|gb|EGA26824.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315731156]
 gi|323249119|gb|EGA33038.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2009159199]
 gi|323254380|gb|EGA38197.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008282]
 gi|323257169|gb|EGA40872.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008283]
 gi|323263510|gb|EGA47038.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008284]
 gi|323267077|gb|EGA50562.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008285]
 gi|323272181|gb|EGA55595.1| protease 4 [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008287]
          Length = 618

 Score = 39.1 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 55/177 (31%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI---KPPISTFCMGQAA 112
                +Q+     +   K I L +NSPGG V A   I   +        P+     G AA
Sbjct: 349 GDTTASQIRDARLDPKVKAIVLRVNSPGGSVNASEVIRAELAAARAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DI----- 151
           S G  + +             G  G+   +      L        G ++    DI     
Sbjct: 409 SGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLSSIGVHSDGVSTSPLADISMTKA 468

Query: 152 ------ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
                 +     I    +R   +      +T E+++K        +  +A   G+VD
Sbjct: 469 LSPEVQQMMQLSIEYGYKRFITLVADARKRTPEQIDKIAQGHVW-TGEDAKANGLVD 524


>gi|239616994|ref|YP_002940316.1| protein of unknown function DUF114 [Kosmotoga olearia TBF 19.5.1]
 gi|239505825|gb|ACR79312.1| protein of unknown function DUF114 [Kosmotoga olearia TBF 19.5.1]
          Length = 280

 Score = 39.1 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 63/165 (38%), Gaps = 31/165 (18%)

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           L  ++       I   I++PGG+V A   I   ++  K  ++ F    A S G+L+  A 
Sbjct: 79  LRAIKMTPDDMPIDFIIHTPGGLVLAAEQIARALKKHKGKVTVFVPHYAMSGGTLIAIAA 138

Query: 123 EKGMRFALPNARILLHQPSGGFSGQAS--------DI-----------ERHAQDIVKIKR 163
           ++       NA +    P  G    AS        DI           +   + I ++K 
Sbjct: 139 DEI--VMDENAVLGPLDPQIGQYPAASILNVVKEKDINKVDDQTLILADISKKAIAQMKE 196

Query: 164 RLNEIYVKNCGKTYEEVEKTLDR--------DHIMSASEACDWGV 200
            + E+     G  +E+ ++  D+        D+ ++  E   +G+
Sbjct: 197 FVTELLKDKFG--FEKAQELADKLCSGYWTHDYPLTVEEVKKFGL 239


>gi|168263890|ref|ZP_02685863.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|205347569|gb|EDZ34200.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 618

 Score = 39.1 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 55/177 (31%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI---KPPISTFCMGQAA 112
                +Q+     +   K I L +NSPGG V A   I   +        P+     G AA
Sbjct: 349 GDTTASQIRDARLDPKVKAIVLRVNSPGGSVNASEVIRAELAAAKAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DI----- 151
           S G  + +             G  G+   +      L        G ++    DI     
Sbjct: 409 SGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLSSIGVHSDGVSTSPLADISMTKA 468

Query: 152 ------ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
                 +     I    +R   +      +T E+++K        +  +A   G+VD
Sbjct: 469 LSPEVQQMMQLSIEYGYKRFITLVADARKRTPEQIDKIAQGHVW-TGEDAKANGLVD 524


>gi|168244402|ref|ZP_02669334.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194449756|ref|YP_002045301.1| protease 4 [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|194408060|gb|ACF68279.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|205336810|gb|EDZ23574.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
          Length = 618

 Score = 39.1 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 55/177 (31%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI---KPPISTFCMGQAA 112
                +Q+     +   K I L +NSPGG V A   I   +        P+     G AA
Sbjct: 349 GDTTASQIRDARLDPKVKAIVLRVNSPGGSVNASEVIRAELAAARAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DI----- 151
           S G  + +             G  G+   +      L        G ++    DI     
Sbjct: 409 SGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLSSIGVHSDGVSTSPLADISMTKA 468

Query: 152 ------ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
                 +     I    +R   +      +T E+++K        +  +A   G+VD
Sbjct: 469 LSPEVQQMMQLSIEYGYKRFITLVADARKRTPEQIDKIAQGHVW-TGEDAKANGLVD 524


>gi|204927902|ref|ZP_03219103.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204323244|gb|EDZ08440.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 618

 Score = 39.1 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 55/177 (31%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI---KPPISTFCMGQAA 112
                +Q+     +   K I L +NSPGG V A   I   +        P+     G AA
Sbjct: 349 GDTTASQIRDARLDPKVKAIVLRVNSPGGSVNASEVIRAELAAAKAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DI----- 151
           S G  + +             G  G+   +      L        G ++    DI     
Sbjct: 409 SGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLSSIGVHSDGVSTSPLADISMTKA 468

Query: 152 ------ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
                 +     I    +R   +      +T E+++K        +  +A   G+VD
Sbjct: 469 LSPEVQQMMQLSIEYGYKRFITLVADARKRTPEQIDKIAQGHVW-TGEDAKANGLVD 524


>gi|168238961|ref|ZP_02664019.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194736488|ref|YP_002114312.1| protease 4 [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194711990|gb|ACF91211.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197288303|gb|EDY27688.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 618

 Score = 39.1 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 55/177 (31%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI---YDTMQFIKPPISTFCMGQAA 112
                +Q+     +   K I L +NSPGG V A   I       +    P+     G AA
Sbjct: 349 GDTTASQIRDARLDPKVKAIVLRVNSPGGSVNASEVIRAELAAAKAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DI----- 151
           S G  + +             G  G+   +      L        G ++    DI     
Sbjct: 409 SGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLSSIGVHSDGVSTSPLADISMTKA 468

Query: 152 ------ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
                 +     I    +R   +      +T E+++K        +  +A   G+VD
Sbjct: 469 LSPEVQQMMQLSIEYGYKRFITLVADARKRTPEQIDKIAQGHVW-TGEDAKANGLVD 524


>gi|321223920|gb|EFX48983.1| Protease IV [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
          Length = 618

 Score = 39.1 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 55/177 (31%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI---KPPISTFCMGQAA 112
                +Q+     +   K I L +NSPGG V A   I   +        P+     G AA
Sbjct: 349 GDTTASQIRDARLDPKVKAIVLRVNSPGGSVNASEVIRAELAAARAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DI----- 151
           S G  + +             G  G+   +      L        G ++    DI     
Sbjct: 409 SGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLSSIGVHSDGVSTSPLADISMTKA 468

Query: 152 ------ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
                 +     I    +R   +      +T E+++K        +  +A   G+VD
Sbjct: 469 LSPEVQQMMQLSIEYGYKRFITLVADARKRTPEQIDKIAQGHVW-TGEDAKANGLVD 524


>gi|224584189|ref|YP_002637987.1| protease 4 [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|224468716|gb|ACN46546.1| protease IV [Salmonella enterica subsp. enterica serovar Paratyphi
           C strain RKS4594]
 gi|322714354|gb|EFZ05925.1| protease IV [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 618

 Score = 39.1 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 55/177 (31%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI---KPPISTFCMGQAA 112
                +Q+     +   K I L +NSPGG V A   I   +        P+     G AA
Sbjct: 349 GDTTASQIRDARLDPKVKAIVLRVNSPGGSVNASEVIRAELAAARAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DI----- 151
           S G  + +             G  G+   +      L        G ++    DI     
Sbjct: 409 SGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLSSIGVHSDGVSTSPLADISMTKA 468

Query: 152 ------ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
                 +     I    +R   +      +T E+++K        +  +A   G+VD
Sbjct: 469 LSPEVQQMMQLSIEYGYKRFITLVADARKRTPEQIDKIAQGHVW-TGEDAKANGLVD 524


>gi|213427777|ref|ZP_03360527.1| protease 4 [Salmonella enterica subsp. enterica serovar Typhi str.
           E02-1180]
          Length = 618

 Score = 39.1 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 55/177 (31%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI---KPPISTFCMGQAA 112
                +Q+     +   K I L +NSPGG V A   I   +        P+     G AA
Sbjct: 349 GDTTASQIRDARLDPKVKAIVLRVNSPGGSVNASEVIRAELAAARAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DI----- 151
           S G  + +             G  G+   +      L        G ++    DI     
Sbjct: 409 SGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLSSIGVHSDGVSTSPLADISMTKA 468

Query: 152 ------ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
                 +     I    +R   +      +T E+++K        +  +A   G+VD
Sbjct: 469 LSPEVQQMMQLSIEYGYKRFITLVADARKRTPEQIDKIAQGHVW-TGEDAKANGLVD 524


>gi|168233210|ref|ZP_02658268.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194469685|ref|ZP_03075669.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|200389848|ref|ZP_03216459.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|194456049|gb|EDX44888.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|199602293|gb|EDZ00839.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205332636|gb|EDZ19400.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 618

 Score = 39.1 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 55/177 (31%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI---KPPISTFCMGQAA 112
                +Q+     +   K I L +NSPGG V A   I   +        P+     G AA
Sbjct: 349 GDTTASQIRDARLDPKVKAIVLRVNSPGGSVNASEVIRAELAAARAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DI----- 151
           S G  + +             G  G+   +      L        G ++    DI     
Sbjct: 409 SGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLSSIGVHSDGVSTSPLADISMTKA 468

Query: 152 ------ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
                 +     I    +R   +      +T E+++K        +  +A   G+VD
Sbjct: 469 LSPEVQQMMQLSIEYGYKRFITLVADARKRTPEQIDKIAQGHVW-TGEDAKANGLVD 524


>gi|161614303|ref|YP_001588268.1| protease 4 [Salmonella enterica subsp. enterica serovar Paratyphi B
           str. SPB7]
 gi|161363667|gb|ABX67435.1| hypothetical protein SPAB_02048 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 618

 Score = 39.1 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 55/177 (31%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI---KPPISTFCMGQAA 112
                +Q+     +   K I L +NSPGG V A   I   +        P+     G AA
Sbjct: 349 GDTTASQIRDARLDPKVKAIVLRVNSPGGSVNASEVIRAELAAARAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DI----- 151
           S G  + +             G  G+   +      L        G ++    DI     
Sbjct: 409 SGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLSSIGVHSDGVSTSPLADISMTKA 468

Query: 152 ------ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
                 +     I    +R   +      +T E+++K        +  +A   G+VD
Sbjct: 469 LSPEVQQMMQLSIEYGYKRFITLVADARKRTPEQIDKIAQGHVW-TGEDAKANGLVD 524


>gi|150010501|ref|YP_001305244.1| protease IV [Parabacteroides distasonis ATCC 8503]
 gi|149938925|gb|ABR45622.1| protease IV [Parabacteroides distasonis ATCC 8503]
          Length = 588

 Score = 39.1 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 67/186 (36%), Gaps = 35/186 (18%)

Query: 50  QIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP--PISTFC 107
            IE  +   +  +L+ L+  +  K +   +NSPGG       I+  +  +K   P+    
Sbjct: 324 DIEQSITEKMADELIKLKNNDDVKAVVFRVNSPGGSAYISEQIWRQVVELKKVKPVVVSM 383

Query: 108 MGQAASMGSLLLSAGEKGMRFALPNARI-------LLHQPSGGFSGQA-----------S 149
              AAS G  +  A  K    A PN          +    SG F   A           S
Sbjct: 384 GNVAASGGYYISCAANKI--IAEPNTLTGSIGIFGMFPNASGLFGKLALTTDIVKTNTFS 441

Query: 150 DIERHAQDIVKIKRRLNEIYVKN---C---------GKTYEEVEKTLDRDHIMSASEACD 197
           D+   ++ + + ++ L + YV+              G T E V          +  +A +
Sbjct: 442 DLGDLSRPMTESEKALIQGYVERGYQTFLSRCAEGRGMTTEAVNAIGQGRVW-TGEQAKE 500

Query: 198 WGVVDK 203
            G+VD+
Sbjct: 501 RGLVDE 506


>gi|16764646|ref|NP_460261.1| protease 4 [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|167991889|ref|ZP_02572988.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|197262148|ref|ZP_03162222.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|16419812|gb|AAL20220.1| protease IV [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|197240403|gb|EDY23023.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205329812|gb|EDZ16576.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261246504|emb|CBG24314.1| protease IV [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267993167|gb|ACY88052.1| protease 4 [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 14028S]
 gi|301157832|emb|CBW17326.1| protease IV [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312912281|dbj|BAJ36255.1| protease 4 [Salmonella enterica subsp. enterica serovar Typhimurium
           str. T000240]
 gi|323129566|gb|ADX16996.1| signal peptide peptidase SppA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
          Length = 618

 Score = 39.1 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 55/177 (31%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI---KPPISTFCMGQAA 112
                +Q+     +   K I L +NSPGG V A   I   +        P+     G AA
Sbjct: 349 GDTTASQIRDARLDPKVKAIVLRVNSPGGSVNASEVIRAELAAARAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DI----- 151
           S G  + +             G  G+   +      L        G ++    DI     
Sbjct: 409 SGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLSSIGVHSDGVSTSPLADISMTKA 468

Query: 152 ------ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
                 +     I    +R   +      +T E+++K        +  +A   G+VD
Sbjct: 469 LSPEVQQMMQLSIEYGYKRFITLVADARKRTPEQIDKIAQGHVW-TGEDAKANGLVD 524


>gi|16760600|ref|NP_456217.1| protease 4 [Salmonella enterica subsp. enterica serovar Typhi str.
           CT18]
 gi|29141640|ref|NP_804982.1| protease 4 [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
 gi|56413719|ref|YP_150794.1| protease 4 [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|168463310|ref|ZP_02697241.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168821937|ref|ZP_02833937.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194443380|ref|YP_002040552.1| protease 4 [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|197250444|ref|YP_002146744.1| protease 4 [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|197362642|ref|YP_002142279.1| protease 4 [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
 gi|207857196|ref|YP_002243847.1| protease 4 [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|213028304|ref|ZP_03342751.1| protease 4 [Salmonella enterica subsp. enterica serovar Typhi str.
           404ty]
 gi|213162980|ref|ZP_03348690.1| protease 4 [Salmonella enterica subsp. enterica serovar Typhi str.
           E00-7866]
 gi|213647253|ref|ZP_03377306.1| protease 4 [Salmonella enterica subsp. enterica serovar Typhi str.
           J185]
 gi|213850391|ref|ZP_03381289.1| protease 4 [Salmonella enterica subsp. enterica serovar Typhi str.
           M223]
 gi|238910887|ref|ZP_04654724.1| protease 4 [Salmonella enterica subsp. enterica serovar Tennessee
           str. CDC07-0191]
 gi|289829513|ref|ZP_06547115.1| protease 4 [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-3139]
 gi|81514303|sp|Q8Z6F3|SPPA_SALTI RecName: Full=Protease 4; AltName: Full=Endopeptidase IV; AltName:
           Full=Protease IV; AltName: Full=Signal peptide peptidase
 gi|25290100|pir||AB0711 protease IV (EC 3.4.21.-) [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16502896|emb|CAD02059.1| protease IV [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29137268|gb|AAO68831.1| protease IV [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
 gi|56127976|gb|AAV77482.1| protease IV [Salmonella enterica subsp. enterica serovar Paratyphi
           A str. ATCC 9150]
 gi|194402043|gb|ACF62265.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|195634238|gb|EDX52590.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197094119|emb|CAR59619.1| protease IV [Salmonella enterica subsp. enterica serovar Paratyphi
           A str. AKU_12601]
 gi|197214147|gb|ACH51544.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|205341603|gb|EDZ28367.1| signal peptide peptidase SppA, 67K type [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|206708999|emb|CAR33329.1| protease IV [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|320086223|emb|CBY95997.1| protease IV [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 618

 Score = 39.1 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 55/177 (31%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI---KPPISTFCMGQAA 112
                +Q+     +   K I L +NSPGG V A   I   +        P+     G AA
Sbjct: 349 GDTTASQIRDARLDPKVKAIVLRVNSPGGSVNASEVIRAELAAARAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DI----- 151
           S G  + +             G  G+   +      L        G ++    DI     
Sbjct: 409 SGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLSSIGVHSDGVSTSPLADISMTKA 468

Query: 152 ------ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
                 +     I    +R   +      +T E+++K        +  +A   G+VD
Sbjct: 469 LSPEVQQMMQLSIEYGYKRFITLVADARKRTPEQIDKIAQGHVW-TGEDAKANGLVD 524


>gi|295698349|ref|YP_003603004.1| signal peptide peptidase SppA, 67K type [Candidatus Riesia
           pediculicola USDA]
 gi|291157055|gb|ADD79500.1| signal peptide peptidase SppA, 67K type [Candidatus Riesia
           pediculicola USDA]
          Length = 634

 Score = 39.1 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 5/81 (6%)

Query: 49  GQIEDHMATL--ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP---I 103
                 +A    I  ++   E++   + + L INSPGG V+    I + ++  +     +
Sbjct: 356 NYENSSIANSENIVKKIRQAESDPNIRSLILRINSPGGTVSDSEKIRNALKSFRKNKKFV 415

Query: 104 STFCMGQAASMGSLLLSAGEK 124
                G A S G  + +  ++
Sbjct: 416 VVSMGGMATSGGYWISTESDR 436


>gi|301311313|ref|ZP_07217240.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. 20_3]
 gi|300830399|gb|EFK61042.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. 20_3]
          Length = 588

 Score = 39.1 bits (90), Expect = 0.48,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 67/186 (36%), Gaps = 35/186 (18%)

Query: 50  QIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP--PISTFC 107
            IE  +   +  +L+ L+  +  K +   +NSPGG       I+  +  +K   P+    
Sbjct: 324 DIEQSITEKMADELIKLKNNDDVKAVVFRVNSPGGSAYISEQIWRQVVELKKVKPVVVSM 383

Query: 108 MGQAASMGSLLLSAGEKGMRFALPNARI-------LLHQPSGGFSGQA-----------S 149
              AAS G  +  A  K    A PN          +    SG F   A           S
Sbjct: 384 GNVAASGGYYISCAANKI--IAEPNTLTGSIGIFGMFPNASGLFGKLALTTDIVKTNTFS 441

Query: 150 DIERHAQDIVKIKRRLNEIYVKN---C---------GKTYEEVEKTLDRDHIMSASEACD 197
           D+   ++ + + ++ L + YV+              G T E V          +  +A +
Sbjct: 442 DLGDLSRPMTESEKALIQGYVERGYQTFLSRCAEGRGMTTEAVNAIGQGRVW-TGEQAKE 500

Query: 198 WGVVDK 203
            G+VD+
Sbjct: 501 RGLVDE 506


>gi|256839290|ref|ZP_05544800.1| signal peptide peptidase SppA, 67K type [Parabacteroides sp. D13]
 gi|256740209|gb|EEU53533.1| signal peptide peptidase SppA, 67K type [Parabacteroides sp. D13]
          Length = 582

 Score = 39.1 bits (90), Expect = 0.48,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 67/186 (36%), Gaps = 35/186 (18%)

Query: 50  QIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP--PISTFC 107
            IE  +   +  +L+ L+  +  K +   +NSPGG       I+  +  +K   P+    
Sbjct: 318 DIEQSITEKMADELIKLKNNDDVKAVVFRVNSPGGSAYISEQIWRQVVELKKVKPVVVSM 377

Query: 108 MGQAASMGSLLLSAGEKGMRFALPNARI-------LLHQPSGGFSGQA-----------S 149
              AAS G  +  A  K    A PN          +    SG F   A           S
Sbjct: 378 GNVAASGGYYISCAANKI--IAEPNTLTGSIGIFGMFPNASGLFGKLALTTDIVKTNTFS 435

Query: 150 DIERHAQDIVKIKRRLNEIYVKN---C---------GKTYEEVEKTLDRDHIMSASEACD 197
           D+   ++ + + ++ L + YV+              G T E V          +  +A +
Sbjct: 436 DLGDLSRPMTESEKALIQGYVERGYQTFLSRCAEGRGMTTEAVNAIGQGRVW-TGEQAKE 494

Query: 198 WGVVDK 203
            G+VD+
Sbjct: 495 RGLVDE 500


>gi|86608463|ref|YP_477225.1| signal peptide peptidase SppA, 36K type [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86557005|gb|ABD01962.1| signal peptide peptidase SppA, 36K type [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 268

 Score = 39.1 bits (90), Expect = 0.48,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 68/190 (35%), Gaps = 32/190 (16%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
           + V G I+      +   L  +E EN    + L I+SPGG V     IY+ +  ++    
Sbjct: 17  IEVAGAIDGKTRERVLKALKEVE-ENQIPAVVLRIDSPGGTVADSQEIYNALLRLREKKG 75

Query: 105 TFCMG----QAASMGSLLLSAGEK------------GMRFALPNARILLHQPSGGF---- 144
           T  +      AAS G  +    EK            G+     N   LL +    F    
Sbjct: 76  TRIVASFGNIAASGGVYIAMGAEKIVANPGTITGSIGVIIRGNNIERLLDKVGISFKVIK 135

Query: 145 SGQASDIERHAQDIVKIKRRLNEIYVKNC-GKTYEEVEKT---------LDRD-HIMSAS 193
           SG   DI    +++   +R + +  +    G+  + V               D  I S  
Sbjct: 136 SGPYKDILSFDRELTPEERNILQELIDITYGQFVQTVAAARKLSLNVVKTFADGRIFSGE 195

Query: 194 EACDWGVVDK 203
           +A   GVVD+
Sbjct: 196 QALHLGVVDR 205


>gi|124515664|gb|EAY57173.1| Peptidase S49 (SppA) [Leptospirillum rubarum]
 gi|206602280|gb|EDZ38762.1| Peptidase S49 (SppA) [Leptospirillum sp. Group II '5-way CG']
          Length = 295

 Score = 39.1 bits (90), Expect = 0.48,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 68/191 (35%), Gaps = 32/191 (16%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP---ISTFCMGQAA 112
           +     Q+  L ++   K I L INSPGG V     IY+ +   +     + +      A
Sbjct: 55  SEKTIRQIRTLASDPEVKAILLRINSPGGAVVPSQDIYEEVLKARKKGKIVVSSIGTVGA 114

Query: 113 S------------MGSLLLSAGEKGMRFALPNARILLHQPSGGF----SGQASDI----- 151
           S            M S     G  G+   L   + LL +         SG+  D+     
Sbjct: 115 SGAYYIASASDFIMASSGSLTGSIGVIMELAEVKDLLDKIGVHSEVVKSGKMKDVGSPFR 174

Query: 152 ERHAQDIVKIKRRLNE-----IYVKNCGK--TYEEVEKTLDRDHIMSASEACDWGVVDKV 204
              A +   +K  L+      I   + G+  + ++++   D   + +   A  + +VD +
Sbjct: 175 PMTADEKAYMKSLLDNIHQQFILAVSKGRHLSVDKIDPLAD-GRVFTGEMAFRYHLVDGI 233

Query: 205 LMSRIDIEEKS 215
              R  + + +
Sbjct: 234 GDYRDALRKAA 244


>gi|150375910|ref|YP_001312506.1| hypothetical protein Smed_3760 [Sinorhizobium medicae WSM419]
 gi|150030457|gb|ABR62573.1| conserved hypothetical protein [Sinorhizobium medicae WSM419]
          Length = 262

 Score = 39.1 bits (90), Expect = 0.48,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 68/181 (37%), Gaps = 23/181 (12%)

Query: 39  LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF 98
           LL E  + +        A    AQ +    E  +   ++ +NSPGG V   +AI   ++ 
Sbjct: 98  LLAEGTIDLG-------AAARFAQEIEARGEYVK---TVALNSPGGSVEDALAISKLIRE 147

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDI 158
            K           AS   ++ + G    R A  +A I +HQ    FSG   D    AQ +
Sbjct: 148 KKLDTKIASRALCASSCPIVFAGGVA--RVAASDALIGVHQV---FSGGGDDRSTPAQAM 202

Query: 159 VKIKRRLNEIYVKN-------CGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
              +     +  ++        G     +E   +R + ++  E  ++ ++ + + +    
Sbjct: 203 SFAQSTTARV-ARHLDTMGIGAGLWINALETPPERLYYLTTKEMAEFHLITEPVETAKKK 261

Query: 212 E 212
           E
Sbjct: 262 E 262


>gi|213417443|ref|ZP_03350585.1| protease 4 [Salmonella enterica subsp. enterica serovar Typhi str.
           E01-6750]
          Length = 543

 Score = 38.7 bits (89), Expect = 0.48,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 55/177 (31%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI---KPPISTFCMGQAA 112
                +Q+     +   K I L +NSPGG V A   I   +        P+     G AA
Sbjct: 349 GDTTASQIRDARLDPKVKAIVLRVNSPGGSVNASEVIRAELAAARAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DI----- 151
           S G  + +             G  G+   +      L        G ++    DI     
Sbjct: 409 SGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLSSIGVHSDGVSTSPLADISMTKA 468

Query: 152 ------ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
                 +     I    +R   +      +T E+++K        +  +A   G+VD
Sbjct: 469 LSPEVQQMMQLSIEYGYKRFITLVADARKRTPEQIDKIAQGHVW-TGEDAKANGLVD 524


>gi|329894358|ref|ZP_08270228.1| Enoyl-CoA hydratase [gamma proteobacterium IMCC3088]
 gi|328923154|gb|EGG30477.1| Enoyl-CoA hydratase [gamma proteobacterium IMCC3088]
          Length = 257

 Score = 38.7 bits (89), Expect = 0.49,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 29/130 (22%)

Query: 92  IYDTMQFIKPPISTFCMGQAASMGSLLLSAGE-----KGMRFALPNARILLHQPSGGFSG 146
           I++  Q    P+     G AA+ G  L   G+     +  RFA  +AR+ +    G    
Sbjct: 85  IHEAFQRFSKPVIMAVNGIAATGGFELALMGDILLGCENTRFADTHARVGIAPGWGLSQ- 143

Query: 147 QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
                 + A+ I   + +         G             + +SA +A DWG+V +++ 
Sbjct: 144 ------KLARIIGPSRAK----EAHYTG-------------NFISAQQASDWGLVSRLVA 180

Query: 207 SRIDIEEKSK 216
           +   + E  K
Sbjct: 181 ADRLLLEAEK 190


>gi|329897050|ref|ZP_08271822.1| protease IV, a signal peptide peptidase [gamma proteobacterium
           IMCC3088]
 gi|328921490|gb|EGG28876.1| protease IV, a signal peptide peptidase [gamma proteobacterium
           IMCC3088]
          Length = 604

 Score = 38.7 bits (89), Expect = 0.50,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD---TMQFIKPPISTFCMGQAA 112
           A  I   L    +++  K I L +NSPGG + A   I D     Q    P+       AA
Sbjct: 344 ADDIANLLRTAYSKDSTKAIVLRVNSPGGSIIASEMIRDEVSAAQRKGIPVVVSMGDVAA 403

Query: 113 SMGSLLLSAGEK 124
           S G  +  + +K
Sbjct: 404 SGGVWVSMSADK 415


>gi|269123729|ref|YP_003306306.1| signal peptide peptidase SppA, 36K type [Streptobacillus
           moniliformis DSM 12112]
 gi|268315055|gb|ACZ01429.1| signal peptide peptidase SppA, 36K type [Streptobacillus
           moniliformis DSM 12112]
          Length = 547

 Score = 38.7 bits (89), Expect = 0.50,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 8/92 (8%)

Query: 41  KERIVFVTGQIEDHMATLIC--------AQLLFLEAENPQKEISLYINSPGGVVTAGMAI 92
           K  ++++ G+I +   + +          +    E     K I + INSPGG       I
Sbjct: 265 KIAVIYLDGEITEKSNSTVPYISYSNFEQKFEKAEKTKGIKGIVIRINSPGGSAIEAKQI 324

Query: 93  YDTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
           Y+ ++  + P+       AAS G  + SAG K
Sbjct: 325 YNRIRKSEVPVYISIGNIAASGGYYISSAGNK 356


>gi|297526660|ref|YP_003668684.1| protein of unknown function DUF107 [Staphylothermus hellenicus DSM
           12710]
 gi|297255576|gb|ADI31785.1| protein of unknown function DUF107 [Staphylothermus hellenicus DSM
           12710]
          Length = 444

 Score = 38.7 bits (89), Expect = 0.50,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 63/149 (42%), Gaps = 10/149 (6%)

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM---GQAASMGSLLLSAGE 123
           EAE     + + +++PGG++ +   +   ++    PI  +      QA S G+L+L    
Sbjct: 53  EAEKLDAPLIMILDTPGGLLDSANNMIKLIRNSNVPIIGYVYPAGAQAWSAGTLILL--A 110

Query: 124 KGMRFALPNARILLHQP--SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVE 181
             +    P   I   QP      +G    I   ++ I  I   +     ++ G+     E
Sbjct: 111 THVAAMAPGTLIGAAQPVLYDPTTGTYKPIN-ESKIINPIVGIMT-TLAEDRGRNKTAAE 168

Query: 182 KTLDRDHIMSASEACDWGVVDKVLMSRID 210
             + ++  ++A +A ++ V+ +V+   ID
Sbjct: 169 LFVRKNLYLTAEKALEYHVI-EVIALNID 196


>gi|328554274|gb|AEB24766.1| membrane bound hydrolase [Bacillus amyloliquefaciens TA208]
 gi|328912671|gb|AEB64267.1| putative membrane bound hydrolase [Bacillus amyloliquefaciens LL3]
          Length = 438

 Score = 38.7 bits (89), Expect = 0.51,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 3/90 (3%)

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           ++      E+    I L IN+PGG V + + I D +     P++ +   +A S G+ +  
Sbjct: 52  SRSFKDAKESGASHIILDINTPGGAVQSALDIADIIGGSDVPVTAYVNKRALSAGAYIAL 111

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASD 150
             ++   +  P  ++          G A+D
Sbjct: 112 QADEI--YMAPGGKMGAA-AIIDGKGNAAD 138


>gi|284037297|ref|YP_003387227.1| signal peptide peptidase SppA, 67K type [Spirosoma linguale DSM 74]
 gi|283816590|gb|ADB38428.1| signal peptide peptidase SppA, 67K type [Spirosoma linguale DSM 74]
          Length = 589

 Score = 38.7 bits (89), Expect = 0.51,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 56/179 (31%), Gaps = 32/179 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD--TMQFIKPPISTFCMGQAAS 113
           +  I  +L     ++  K I L +NS GG   A   +Y    +     P+       AAS
Sbjct: 329 SETIVEELRKARLDDKVKAIVLRVNSGGGSALASDVMYREVQLARKSKPVIGSMSDYAAS 388

Query: 114 MGSLLLSAGEK------------GMRFALPNARILLHQPSGGFSGQA-----SDIERHAQ 156
            G  +L   +K            G+   L N         G    +      +D      
Sbjct: 389 GGYYMLMGCDKIVAQPNTITGSIGVFSLLFNTENFFKDKLGVTYDRVKTNTNADFPTGTH 448

Query: 157 DI-----VKIKRRLNEIYVKNCGK-------TYEEVEKTLDRDHIMSASEACDWGVVDK 203
           ++       ++R    IY +  GK         + +          + S+    G+VD+
Sbjct: 449 EMTPFQKQTMQRATERIYAEFTGKAAAGRKLPIDSLRAIAGGRVW-TGSQGKALGLVDQ 506


>gi|298374871|ref|ZP_06984829.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. 3_1_19]
 gi|298269239|gb|EFI10894.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. 3_1_19]
          Length = 582

 Score = 38.7 bits (89), Expect = 0.51,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 67/186 (36%), Gaps = 35/186 (18%)

Query: 50  QIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP--PISTFC 107
            IE  +   +  +L+ L+  +  K +   +NSPGG       I+  +  +K   P+    
Sbjct: 318 DIEQSITEKMADELIKLKNNDDVKAVVFRVNSPGGSAYISEQIWRQVVELKKVKPVVVSM 377

Query: 108 MGQAASMGSLLLSAGEKGMRFALPNARI-------LLHQPSGGFSGQA-----------S 149
              AAS G  +  A  K    A PN          +    SG F   A           S
Sbjct: 378 GNVAASGGYYISCAANKI--IAEPNTLTGSIGIFGMFPNASGLFGKLALTTDIVKTNTFS 435

Query: 150 DIERHAQDIVKIKRRLNEIYVKN---C---------GKTYEEVEKTLDRDHIMSASEACD 197
           D+   ++ + + ++ L + YV+              G T E V          +  +A +
Sbjct: 436 DLGDLSRPMTESEKALIQGYVERGYQTFLSRCAEGRGMTTEAVNAIGQGRVW-TGEQAKE 494

Query: 198 WGVVDK 203
            G+VD+
Sbjct: 495 RGLVDE 500


>gi|262382242|ref|ZP_06075379.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. 2_1_33B]
 gi|262295120|gb|EEY83051.1| signal peptide peptidase SppA, 67K type [Bacteroides sp. 2_1_33B]
          Length = 582

 Score = 38.7 bits (89), Expect = 0.52,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 66/186 (35%), Gaps = 35/186 (18%)

Query: 50  QIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP--PISTFC 107
            IE  +   +  +L+ L+  +  K +   +NSPGG       I+  +  +K   P+    
Sbjct: 318 DIEQSITEKMADELIKLKNNDDVKAVVFRVNSPGGSAYISEQIWRQVVELKKVKPVVVSM 377

Query: 108 MGQAASMGSLLLSAGEKGMRFALPNARI-------LLHQPSGGFSGQA-----------S 149
              AAS G  +  A  K    A PN          +    SG F   A           S
Sbjct: 378 GNVAASGGYYISCAANKI--IAEPNTLTGSIGIFGMFPNASGLFGKLALTTDIVKTNTFS 435

Query: 150 DIERHAQDIVKIKRRLNEIYVKN---C---------GKTYEEVEKTLDRDHIMSASEACD 197
           D    ++ + + ++ L + YV+              G T E V          +  +A +
Sbjct: 436 DFGDLSRPMTESEKALIQGYVERGYQTFLSRCAEGRGMTTEAVNAIGQGRVW-TGEQAKE 494

Query: 198 WGVVDK 203
            G+VD+
Sbjct: 495 RGLVDE 500


>gi|307130936|ref|YP_003882952.1| protease IV (signal peptide peptidase) [Dickeya dadantii 3937]
 gi|306528465|gb|ADM98395.1| protease IV (signal peptide peptidase) [Dickeya dadantii 3937]
          Length = 616

 Score = 38.7 bits (89), Expect = 0.52,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 3/70 (4%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM---QFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I   +   +    P+     G AA
Sbjct: 347 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASELIRSELAAARQAGKPVVVSMGGMAA 406

Query: 113 SMGSLLLSAG 122
           S G  + +  
Sbjct: 407 SGGYWISTPA 416


>gi|218511008|ref|ZP_03508886.1| periplasmic protein-like protein [Rhizobium etli Brasil 5]
          Length = 277

 Score = 38.7 bits (89), Expect = 0.52,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 50/134 (37%), Gaps = 16/134 (11%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +++NS GG + AG+ I   ++      +T      AS  +L   AG    RF  P + I 
Sbjct: 34  VFLNSEGGDLKAGIEIGRAIRLRGFATATPPGALCASACALTWLAGS--QRFLQPESNIG 91

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRL---NEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            H       G+AS+       +     +L   +           E +         ++A+
Sbjct: 92  FHAAYRVVDGKASESGVANALVGAYLNQLGLSDTAIAYVTSAPPEGIA-------WLTAA 144

Query: 194 EACDWGV----VDK 203
           +A   G+    VD+
Sbjct: 145 KAQAVGITYDAVDE 158


>gi|255012266|ref|ZP_05284392.1| protease IV [Bacteroides sp. 2_1_7]
          Length = 588

 Score = 38.7 bits (89), Expect = 0.53,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 67/186 (36%), Gaps = 35/186 (18%)

Query: 50  QIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP--PISTFC 107
            IE  +   +  +L+ L+  +  K +   +NSPGG       I+  +  +K   P+    
Sbjct: 324 DIEQSITEKMADELIKLKNNDDVKAVVFRVNSPGGSAYISEQIWRQVVELKKVKPVVVSM 383

Query: 108 MGQAASMGSLLLSAGEKGMRFALPNARI-------LLHQPSGGFSGQA-----------S 149
              AAS G  +  A  K    A PN          +    SG F   A           S
Sbjct: 384 GNVAASGGYYISCAANKI--IAEPNTLTGSIGIFGMFPNASGLFGKLALTTDIVKTNTFS 441

Query: 150 DIERHAQDIVKIKRRLNEIYVKN---C---------GKTYEEVEKTLDRDHIMSASEACD 197
           D+   ++ + + ++ L + YV+              G T E V          +  +A +
Sbjct: 442 DLGDLSRPMTESEKALIQGYVERGYQTFLSRCAEGRGMTTEAVNAIGQGRVW-TGEQAKE 500

Query: 198 WGVVDK 203
            G+VD+
Sbjct: 501 RGLVDE 506


>gi|225175063|ref|ZP_03729059.1| protein of unknown function DUF107 [Dethiobacter alkaliphilus AHT
           1]
 gi|225169239|gb|EEG78037.1| protein of unknown function DUF107 [Dethiobacter alkaliphilus AHT
           1]
          Length = 437

 Score = 38.7 bits (89), Expect = 0.53,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 16/158 (10%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPI 103
           ++ + G +E  +      +      E   + I L IN+PGG V A   I D +     P+
Sbjct: 36  VIPIGGAVEQGL-HRYLERSFREAEEAGAQAIILEINTPGGAVDAATQIRDLIYGADMPV 94

Query: 104 STFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKR 163
             +    A S G+ +  + +    +  P + I   +            E   +     + 
Sbjct: 95  YAYVRWSAISAGAYIALSADAL--YMAPGSNIGAAEIQDMSGA-----EIDEKTRSWWES 147

Query: 164 RLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
            +  +  +  G+  E+V   +      S   A + G+V
Sbjct: 148 EMRSV-AERQGRD-EQVAAAMA-----SPEIAIE-GLV 177


>gi|282891036|ref|ZP_06299541.1| hypothetical protein pah_c045o044 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499029|gb|EFB41343.1| hypothetical protein pah_c045o044 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 344

 Score = 38.7 bits (89), Expect = 0.53,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP----PISTFCMGQAASMGSLLLSAGE 123
           + N  K I L IN+PGG V     IY +++  K     P+  +  G  AS G  + SA +
Sbjct: 102 SNNRVKAIFLEINTPGGTVFDADGIYRSLKAYKKEFDVPVFAYVDGLCASGGMYVASAAD 161

Query: 124 K 124
           K
Sbjct: 162 K 162


>gi|256810323|ref|YP_003127692.1| protein of unknown function DUF114 [Methanocaldococcus fervens
           AG86]
 gi|256793523|gb|ACV24192.1| protein of unknown function DUF114 [Methanocaldococcus fervens
           AG86]
          Length = 282

 Score = 38.7 bits (89), Expect = 0.53,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 55/157 (35%), Gaps = 24/157 (15%)

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR-- 127
              K I L I++PGG+V A   I   ++             A S G+L+  + +K +   
Sbjct: 87  PKDKPIDLIIHTPGGLVLAATQIAKALKAHPAETRVIVPHYAMSGGTLIALSADKIIMDE 146

Query: 128 -------------FALPNARILLHQPSGGFSGQASDI--ERHAQDIVKIKRRLNEIYVKN 172
                        +  P+    + Q         + I  +   + I +++  +  +    
Sbjct: 147 NAVLGPVDPQLGQYPAPSIVKAVEQKGADKVDDQTLILADIAKKAINQVQNFVYTLLKDK 206

Query: 173 CGKTYEE-VEKTLDRDHI-----MSASEACDWGV-VD 202
            GK   + + K L          ++  EA + G+ VD
Sbjct: 207 YGKEKAKELAKILTEGKWTHDYPITVEEAKNLGLDVD 243


>gi|127512869|ref|YP_001094066.1| signal peptide peptidase SppA, 67K type [Shewanella loihica PV-4]
 gi|126638164|gb|ABO23807.1| signal peptide peptidase SppA, 67K type [Shewanella loihica PV-4]
          Length = 613

 Score = 38.7 bits (89), Expect = 0.53,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 61/195 (31%), Gaps = 35/195 (17%)

Query: 41  KERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD---TMQ 97
           K  I+               A L     ++  K + L ++SPGG   A   I      ++
Sbjct: 333 KGNILNGHQAAGQIGGESTSALLRKARFDDKVKAVVLRVDSPGGSAFASEQIRQEVLALK 392

Query: 98  FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-------------------------N 132
               P+       AAS G  + ++ +    +A P                         +
Sbjct: 393 AANKPVVVSMGTYAASGGYWISASAD--YIYATPTTLTGSIGIFGMMTTFEDSLAELGIH 450

Query: 133 ARILLHQPSGGF---SGQASDI-ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188
              +       F    G + ++ E   + I +  +    +  +  G   EEV+K      
Sbjct: 451 TDGVSTSGWTAFSSTQGISDELKEIIQRHIERGYQDFISLVSEERGMKPEEVDKIAQGRV 510

Query: 189 IMSASEACDWGVVDK 203
             S   A + G+VD+
Sbjct: 511 W-SGKRALELGLVDE 524


>gi|256841934|ref|ZP_05547439.1| signal peptide peptidase SppA, 36K type [Parabacteroides sp. D13]
 gi|256736250|gb|EEU49579.1| signal peptide peptidase SppA, 36K type [Parabacteroides sp. D13]
          Length = 294

 Score = 38.7 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 57/174 (32%), Gaps = 45/174 (25%)

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
            EN  K I L I+S GG       + + +     P+  FC    AS    + S  +K   
Sbjct: 117 NENNIKAIVLNIDSGGGEGMGCRIMQEAINSRNKPVVAFCNDFVASAAYGIASCCDK--- 173

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYV-KNCGKTYE---EVEKT 183
               +    +       +     I   ++   K+  +L +IY  K+  K  E    ++  
Sbjct: 174 IVANSNVCRIGSVGTYMT-----IVDTSEYYAKMGIKLIDIYASKSTDKNQEFHKALQGD 228

Query: 184 LD---------RDHIMS------------------------ASEACDWGVVDKV 204
            +          ++ +S                        A EA D G++D++
Sbjct: 229 TEPLKKVCDTYNENFISSIANARVGVINEDQGKWATGKMFFAPEAMDIGMIDEI 282


>gi|123968906|ref|YP_001009764.1| signal peptide peptidase SppA (protease IV) [Prochlorococcus
           marinus str. AS9601]
 gi|123199016|gb|ABM70657.1| signal peptide peptidase SppA (protease IV) [Prochlorococcus
           marinus str. AS9601]
          Length = 269

 Score = 38.7 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 68/205 (33%), Gaps = 35/205 (17%)

Query: 33  YDIYSRLLKERI--VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGM 90
              + R  K+R+  + +   I           L  +E       I + I+SPGG V    
Sbjct: 2   IWPFRRKSKKRMARIVIDEPITSSTRVSFLKALKQVEDREFPALI-VRIDSPGGTVGDSQ 60

Query: 91  AIYDTMQFIK---PPISTFCMGQAASMGSLL------------LSAGEKGMRFALPNARI 135
            IY  ++ +K     +       +AS G  +               G  G+     N   
Sbjct: 61  EIYSAIKRLKDKGCKVIASFGNISASGGVYIGVASDKIVANPGTITGSIGVIIRGNNLSE 120

Query: 136 LLHQPSGGF----SGQASDIE------------RHAQDIVKIKRRLNEIYVKNCGKTYEE 179
           LL +    F    SG   DI                  I +  ++  E   +      EE
Sbjct: 121 LLDKIGIKFETVKSGVFKDILSPDKPLSEEGRGLLQGLIDESYKQFTEAVAEGRNLPVEE 180

Query: 180 VEKTLDRDHIMSASEACDWGVVDKV 204
           V K  D   I + ++A + G+VDK+
Sbjct: 181 VRKFAD-GRIFTGTQAKELGLVDKI 204


>gi|115524254|ref|YP_781165.1| hypothetical protein RPE_2243 [Rhodopseudomonas palustris BisA53]
 gi|115518201|gb|ABJ06185.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53]
          Length = 286

 Score = 38.7 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 65/196 (33%), Gaps = 20/196 (10%)

Query: 12  EDVFLGLVPMVVEQTNRGERSYDIYS--RLLKERIVFVTGQIEDHMATLICAQLLFLEAE 69
            D  L  +P   +       S+D+    RLL       TG I    A  + A++    A+
Sbjct: 83  SDRQLAPMPQ-PDGAQGKPMSFDLVGGGRLLA------TGTITPGSAEALAAEI----AK 131

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
                 ++ +NSPGG V   +A+   ++  K           AS   L+   G +  R  
Sbjct: 132 RGDYVTTVVLNSPGGSVADALAMGRLIRERKLATEVEAGKYCASSCPLVFVGGVE--RRV 189

Query: 130 LPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL----D 185
              A I +HQ        A        D  +I  R      +  G   +     +    D
Sbjct: 190 GTKAAIGVHQVFAMAQAAAPAPRDQMSDAQRISARCQRYLSE-MGIDLQVWVHAMETPKD 248

Query: 186 RDHIMSASEACDWGVV 201
           R  + +  E     +V
Sbjct: 249 RLFVFTPEELKTLKLV 264


>gi|194333703|ref|YP_002015563.1| hypothetical protein Paes_0871 [Prosthecochloris aestuarii DSM 271]
 gi|194311521|gb|ACF45916.1| protein of unknown function DUF107 [Prosthecochloris aestuarii DSM
           271]
          Length = 444

 Score = 38.7 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 67/175 (38%), Gaps = 8/175 (4%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPI 103
            + + G I    A     + + L   +    + + +++PGG+VT+   +   +     P+
Sbjct: 39  TISLQGSINPGSADFF-DRAVSLAIADSAHAVLVELDTPGGLVTSLRQMVRRIMASSVPV 97

Query: 104 STFCM---GQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
             +      QAAS G+LL  A         P   I    P G   G++      +Q  V 
Sbjct: 98  IVYVAPRGAQAASAGALLTLASHVA--AMSPGTEIGAAHPVGLGGGESEKSGVMSQKAVN 155

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRDHIM-SASEACDWGVVDKVLMSRIDIEEK 214
                     +  G++     +   R+ I  +A+EA + GV+D V   R  + + 
Sbjct: 156 DLAAFARSLAEERGRSP-VWAEKAVRESIASTANEAFEAGVIDVVADDRTTLFKA 209


>gi|218439805|ref|YP_002378134.1| hypothetical protein PCC7424_2861 [Cyanothece sp. PCC 7424]
 gi|218172533|gb|ACK71266.1| protein of unknown function DUF114 [Cyanothece sp. PCC 7424]
          Length = 336

 Score = 38.7 bits (89), Expect = 0.58,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 42/117 (35%), Gaps = 2/117 (1%)

Query: 11  SEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
           + +  +   P+  E+T   +    +  +L    +V+ T  +       +      L+   
Sbjct: 6   ASNKKVNQPPVFFEETQ--QLITTLEKKLNSTVLVYWTSPVGSICQNDVEGLQEILQKIG 63

Query: 71  PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
            QKEI L+  S GG   A + I   ++     +        AS  +++    ++   
Sbjct: 64  RQKEIYLFHKSNGGSGLASLRIVHLLRHYTNTLKILIPLGCASAATMIALGADEIYM 120


>gi|254884972|ref|ZP_05257682.1| protease [Bacteroides sp. 4_3_47FAA]
 gi|254837765|gb|EET18074.1| protease [Bacteroides sp. 4_3_47FAA]
          Length = 286

 Score = 38.7 bits (89), Expect = 0.58,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 32/81 (39%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPI 103
           ++ + G +       +   +    A +    I L+IN PGG++T        +     P+
Sbjct: 74  VIVLEGTLYSWETFRLQEYIAQAAANDRIAGIILWINGPGGMITGLDNASKMISECPKPV 133

Query: 104 STFCMGQAASMGSLLLSAGEK 124
             +  G  AS    L SA +K
Sbjct: 134 VAYIAGACASAHFWLASAADK 154


>gi|38707715|ref|NP_944888.1| Putative head maturation protease [Enterobacteria phage Felix 01]
 gi|33340318|gb|AAQ14669.1|AF320576_99 unknown [Enterobacteria phage Felix 01]
 gi|269975290|gb|ACZ55514.1| putative head maturation protease [Staphylococcus phage SA1]
          Length = 448

 Score = 38.7 bits (89), Expect = 0.58,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 27/55 (49%), Gaps = 9/55 (16%)

Query: 159 VKIKRRLNEIYVKNCG-------KTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
            ++++R+N+ Y    G        + E V K  + +   SA EA + G+++ ++ 
Sbjct: 215 ERLQKRINDTYATFTGFVAESRNLSEEAV-KNTEANVY-SAQEALELGLINSIMS 267


>gi|220931947|ref|YP_002508855.1| periplasmic serine protease (ClpP class) [Halothermothrix orenii H
           168]
 gi|219993257|gb|ACL69860.1| periplasmic serine protease (ClpP class) [Halothermothrix orenii H
           168]
          Length = 265

 Score = 38.7 bits (89), Expect = 0.59,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 46/100 (46%), Gaps = 2/100 (2%)

Query: 30  ERSYDIYSRLLKERIV-FVTGQIEDHMATLICAQLLF-LEAENPQKEISLYINSPGGVVT 87
           ER+  + + + ++ I+ F+       +      Q+L  + +   +K I + +++PGG+V 
Sbjct: 39  ERNSRVITMIHRQEILSFIGIPFTRFINIEDSEQILRAIRSTPDEKPIDILLHTPGGLVL 98

Query: 88  AGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           A   I   ++    P+       A S G+L+  A ++ + 
Sbjct: 99  AAEQIAMAIKKHPAPVRVIVPHYAMSGGTLIALAADEIIM 138


>gi|3249702|gb|AAC24140.1| unknown [Enterobacteria phage Felix 01]
          Length = 442

 Score = 38.7 bits (89), Expect = 0.59,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 27/55 (49%), Gaps = 9/55 (16%)

Query: 159 VKIKRRLNEIYVKNCG-------KTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
            ++++R+N+ Y    G        + E V K  + +   SA EA + G+++ ++ 
Sbjct: 215 ERLQKRINDTYATFTGFVAESRNLSEEAV-KNTEANVY-SAQEALELGLINSIMS 267


>gi|238801794|ref|YP_002922844.1| putative head maturation protease [Enterobacteria phage WV8]
 gi|216263007|gb|ACJ71875.1| putative head maturation protease [Enterobacteria phage WV8]
          Length = 448

 Score = 38.7 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 27/55 (49%), Gaps = 9/55 (16%)

Query: 159 VKIKRRLNEIYVKNCG-------KTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
            ++++R+N+ Y    G        + E V K  + +   SA EA + G+++ ++ 
Sbjct: 215 ERLQKRINDTYATFTGFVAESRNLSEEAV-KNTEANVY-SAQEALELGLINSIMS 267


>gi|37626097|gb|AAQ96473.1| putative protease [Vibrio phage VP16T]
          Length = 395

 Score = 38.7 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 64/177 (36%), Gaps = 27/177 (15%)

Query: 58  LICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP--------------- 102
            + A +   E+++  K I  YI+SPGG     + + D ++  K P               
Sbjct: 83  DVFAAINAAESDDSVKNIEYYIDSPGGEAEGAIKLGDMIRGTKKPSTAFVSTASSAAYLA 142

Query: 103 -------ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
                  ++T  + +A ++G++L         +           P+     +  +  R  
Sbjct: 143 ASQADKIVATSRVSRAGNIGAVLSMRRPSQSSYI---DVTSTDAPNKRPDPETEEGRRVI 199

Query: 156 QD--IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           ++  +  +     +      G T  +V +   R   + A  A   G++D++L +  +
Sbjct: 200 REQALDPLHNMFAQAVADGRGTTLADVNQNFGRGGSLFAETALKMGMIDEILTAETE 256


>gi|86605621|ref|YP_474384.1| signal peptide peptidase SppA, 36K type [Synechococcus sp.
           JA-3-3Ab]
 gi|86554163|gb|ABC99121.1| signal peptide peptidase SppA, 36K type [Synechococcus sp.
           JA-3-3Ab]
          Length = 268

 Score = 38.7 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 68/190 (35%), Gaps = 32/190 (16%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
           + VTG I+      +   L  +E E     + L I+SPGG V     IY+ +  ++    
Sbjct: 17  IEVTGVIDGRTRERVLKALQEVE-ERQIPAVVLRIDSPGGTVADSQEIYNALSRLRERKG 75

Query: 105 TFCMG----QAASMGSLLLSAGEK------------GMRFALPNARILLHQPSGGF---- 144
           T  +      AAS G  +    EK            G+     N   LL +    F    
Sbjct: 76  TRIVASFGNIAASGGVYIAMGAEKIVSNPGTITGSIGVIIRGNNLERLLDKIGISFKVIK 135

Query: 145 SGQASDIERHAQDIVKIKRRLNEIYVKNC-GKTYEEVEKT---------LDRD-HIMSAS 193
           SG   DI    +++   +R + +  +    G+  + V               D  I S  
Sbjct: 136 SGPYKDILSFDRELTPEERNILQELIDITYGQFVQTVAAARRLSVNVVKTFADGRIFSGE 195

Query: 194 EACDWGVVDK 203
           +A   GVVD+
Sbjct: 196 QALHLGVVDR 205


>gi|307719554|ref|YP_003875086.1| periplasmic serine protease [Spirochaeta thermophila DSM 6192]
 gi|306533279|gb|ADN02813.1| periplasmic serine protease [Spirochaeta thermophila DSM 6192]
          Length = 284

 Score = 38.7 bits (89), Expect = 0.62,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 76/201 (37%), Gaps = 25/201 (12%)

Query: 25  QTNRGERSYDIYSRLLKERIV-FVTGQIEDHMA-TLICAQLLFLEAENPQKEISLYINSP 82
           +T   +R   + + + ++  + F+   +  ++      A L  ++  +    I L +++P
Sbjct: 34  RTLERKRKSRVITLIHRQETMGFLGFPLVRYIDIDDSEAVLRAIKMTDDDVPIDLILHTP 93

Query: 83  GGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR----FALPNARILLH 138
           GG+V A   I   ++     ++ F    A S G+L+  A ++ +        P    +  
Sbjct: 94  GGLVVAAEQIAYALKKHPAKVTVFVPHYAMSGGTLIALAADEVVMDENAVLGPVDPQIGQ 153

Query: 139 QPSG---------GFSGQASDIERHAQD----IVKIKRRLNEIYVKNC-GKTYEEVEKTL 184
           QP+            +    +    A      I ++KR +  +      G   EE+   L
Sbjct: 154 QPAASILKVLERKPIAEVDDETIILADVAEKAICQVKRVVKTLLEGRLPGDKAEEIATRL 213

Query: 185 D-----RDHIMSASEACDWGV 200
                  D+ ++  EA + G+
Sbjct: 214 ATGEFTHDYPITVDEARELGL 234


>gi|224540873|ref|ZP_03681412.1| hypothetical protein CATMIT_00016 [Catenibacterium mitsuokai DSM
           15897]
 gi|224526208|gb|EEF95313.1| hypothetical protein CATMIT_00016 [Catenibacterium mitsuokai DSM
           15897]
          Length = 312

 Score = 38.7 bits (89), Expect = 0.62,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 57/152 (37%), Gaps = 37/152 (24%)

Query: 64  LFLEAENPQKEISLYINSPGGVV---TAGMAIYD-------TMQFIKPPISTFCMGQAAS 113
           L  +AE   + I  +I++PG      +    I +        M  +K PI     G+  S
Sbjct: 134 LMKQAEKFHRPIITFIDTPGAYPGISSEENGIGEAIGQSLMMMSDLKVPIIVIITGEGGS 193

Query: 114 MGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC 173
            G+L LS G+      L NA   +  P G  S          +D+               
Sbjct: 194 GGALALSIGDHL--AMLENAVYSVLSPEGFAS-------ILWKDVKG------------- 231

Query: 174 GKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
               E +E+  +    M+A +   +G++D+++
Sbjct: 232 ----ERIEEACEVMK-MTAEDLYHYGIIDEII 258


>gi|227501017|ref|ZP_03931066.1| S49 family peptidase [Anaerococcus tetradius ATCC 35098]
 gi|227216790|gb|EEI82188.1| S49 family peptidase [Anaerococcus tetradius ATCC 35098]
          Length = 327

 Score = 38.7 bits (89), Expect = 0.63,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 73/197 (37%), Gaps = 35/197 (17%)

Query: 41  KERIVFVTGQIEDHMATL-ICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI------- 92
           K ++V V G I+   A   + ++L   + +   K + L +NSPGG V A   I       
Sbjct: 62  KIKVVDVDGVIKADDANDFVVSELKDAKDDPLVKGVILNVNSPGGSVYASERIANAIKAL 121

Query: 93  -------YDTMQFIKP-----------PISTFCMGQAASMGSLLLSAGEKGM--RFALPN 132
                  Y  M  +              I         S+G ++ S   +G+  ++ +  
Sbjct: 122 KKAKKPVYTVMGQMAASGGYYISAPTNRIYASNETWTGSIGVIIQSYSLQGLFDKYGIKE 181

Query: 133 ARILLHQPSGGFSGQASDIERHAQD-----IVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
             I   +       Q  D+ +  ++     +     R  +I V+  G + +EV K  D  
Sbjct: 182 QNITTGKMK-DAGSQGRDMNKEEKEYFQGLVNSAFDRFVKIVVEGRGLSEKEVRKIADGR 240

Query: 188 HIMSASEACDWGVVDKV 204
                S+A   G+VDK+
Sbjct: 241 VY-DGSQALSLGLVDKI 256


>gi|315186644|gb|EFU20403.1| hypothetical protein SpithDRAFT_1037 [Spirochaeta thermophila DSM
           6578]
          Length = 284

 Score = 38.3 bits (88), Expect = 0.63,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 80/198 (40%), Gaps = 29/198 (14%)

Query: 30  ERSYDIYSRLLKERIV-FVTGQIEDHMA-TLICAQLLFLEAENPQKEISLYINSPGGVVT 87
           +R   + + + ++  + F+   +  ++      A L  ++  +    I L +++PGG+V 
Sbjct: 39  KRKSRVITLIHRQETMGFLGFPLVRYIDIDDSEAVLRAIKMTDDDVPIDLILHTPGGLVV 98

Query: 88  AGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR----FALPNARILLHQPSGG 143
           A   I   ++     ++ F    A S G+L+  A ++ +        P    +  QP+  
Sbjct: 99  AAEQIAYALKKHPAKVTVFVPHYAMSGGTLIALAADEVVMDENAVLGPVDPQIGQQPAAS 158

Query: 144 F--------SGQASD----IERHAQDIVKIKRRLNEIYVKNCGK-TYEEVEKTLDR---- 186
                      +  D    +   A+  ++  +R+ +  ++  G+   ++VE+   R    
Sbjct: 159 ILKVLERKPIAEVDDETIILADVAEKAIRQVKRVVKTLLE--GRLPGDKVEEIATRLATG 216

Query: 187 ----DHIMSASEACDWGV 200
               D+ ++  EA + G+
Sbjct: 217 EFTHDYPITVDEARELGL 234


>gi|241204248|ref|YP_002975344.1| periplasmic protein-like protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240858138|gb|ACS55805.1| periplasmic protein-like protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 302

 Score = 38.3 bits (88), Expect = 0.63,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 49/134 (36%), Gaps = 16/134 (11%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +++NS GG + AG+ I   ++      +T      AS  +L   AG    RF  P + I 
Sbjct: 59  VFLNSEGGDLKAGIEIGRAIRLRGFATATPPGTLCASACALTWLAGS--QRFLQPESNIG 116

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRL---NEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            H       G+AS+       +     +L               E +         ++A+
Sbjct: 117 FHAAYRVVDGKASESGVANALVGAYLNQLGLSETAIAYVTSAPPEGIA-------WLTAA 169

Query: 194 EACDWGV----VDK 203
           +A   G+    +D+
Sbjct: 170 KAQMVGITYDAIDE 183


>gi|313677301|ref|YP_004055297.1| hypothetical protein Ftrac_3215 [Marivirga tractuosa DSM 4126]
 gi|312943999|gb|ADR23189.1| protein of unknown function DUF107 [Marivirga tractuosa DSM 4126]
          Length = 461

 Score = 38.3 bits (88), Expect = 0.64,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 45/159 (28%), Gaps = 22/159 (13%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMG 115
                   L    E     I + +N+ GG +     I   +  +  P+  F    AAS G
Sbjct: 55  TNRYVELALQEAKERNSSHILIEMNTYGGALYDADEIRSALLNLDIPVYVFIDNNAASAG 114

Query: 116 SLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK 175
           +L+  A +    +  P   I            A D            R +     +  G+
Sbjct: 115 ALISIACDSI--YMAPGGSIGAATVVNQTGEAAPD------KYQSYMRSIMRSTAEASGR 166

Query: 176 TYEEVEKTLDRDHI-------------MSASEACDWGVV 201
               + + +  + I              S SEA   G  
Sbjct: 167 DP-RIAEAMVDEKIEIEGITKAGEVITFSTSEAIKHGFC 204


>gi|254460130|ref|ZP_05073546.1| enoyl-CoA hydratase [Rhodobacterales bacterium HTCC2083]
 gi|206676719|gb|EDZ41206.1| enoyl-CoA hydratase [Rhodobacteraceae bacterium HTCC2083]
          Length = 261

 Score = 38.3 bits (88), Expect = 0.64,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 54/162 (33%), Gaps = 22/162 (13%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           R V ++GQ     A L  A    L   +P + +      P         I+  ++    P
Sbjct: 48  RAVVLSGQGNAFCAGLDVASFAALAGGDPHEIMMPRTRGPSNDYQHVSMIWHQLEM---P 104

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIK 162
           +     G     G  + S  +  MR A P+ R+ +        G   D+         ++
Sbjct: 105 VIAALQGVCFGAGLQIASGAD--MRIAAPDTRMSI---LEMKWGLVPDMGGMVLWPALMR 159

Query: 163 RRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             +        G   EE           S S+A D+G+V +V
Sbjct: 160 ADVLRRL-TYTG---EE----------FSGSDAKDYGLVTEV 187


>gi|110633690|ref|YP_673898.1| hypothetical protein Meso_1337 [Mesorhizobium sp. BNC1]
 gi|110284674|gb|ABG62733.1| hypothetical protein Meso_1337 [Chelativorans sp. BNC1]
          Length = 143

 Score = 38.3 bits (88), Expect = 0.64,   Method: Composition-based stats.
 Identities = 15/108 (13%), Positives = 36/108 (33%), Gaps = 16/108 (14%)

Query: 107 CMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLN 166
             G   SM            RF L    +++ +          ++ +  + I        
Sbjct: 37  VNGFRWSMAHFFFI-----HRFLLHPPALMVQE----APWTVDELRQMDEMINISANFST 87

Query: 167 EIYVKNCGKTYEEVEKTLDRDH---IMSASEACDWGVV----DKVLMS 207
           E Y        EE+      ++   +++A +A + G++    D ++ +
Sbjct: 88  EAYKTCTSMPEEEIRAISYSENQRLVLTAEQAREKGLISGTVDGIIDT 135


>gi|288555734|ref|YP_003427669.1| hypothetical protein BpOF4_13630 [Bacillus pseudofirmus OF4]
 gi|288546894|gb|ADC50777.1| hypothetical protein BpOF4_13630 [Bacillus pseudofirmus OF4]
          Length = 446

 Score = 38.3 bits (88), Expect = 0.65,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 58/154 (37%), Gaps = 25/154 (16%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           I L I++PGG V A   I   MQ    PI  F   +A S G+ +    ++      P   
Sbjct: 70  IVLEIHTPGGAVDAAGEIARLMQNTDIPIIAFVTKEAISAGAYIALNADEI--VMAPGTT 127

Query: 135 ILLHQPSGGFSGQASDIERHAQDIVKIK--RRLNE-------IYVKNC------GKTYEE 179
           +       G  G A++ +  +  + +++    LN+                   G + EE
Sbjct: 128 MGAAGVIDGA-GNAAEEKAQSYWLAEMRAAAELNDRDPLYALAMADRSIEIPDLGVSDEE 186

Query: 180 VEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
                     ++ SEA + G  + +  +R ++ E
Sbjct: 187 FLT-------LTPSEAIEVGYAEAIASNRAELIE 213


>gi|206603020|gb|EDZ39500.1| Protein of unknown function [Leptospirillum sp. Group II '5-way
           CG']
          Length = 277

 Score = 38.3 bits (88), Expect = 0.65,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 66/172 (38%), Gaps = 28/172 (16%)

Query: 25  QTNRGERSYDIYSRLLKERIVFVTG-----QIEDHMATLICAQLLFLEAENPQKEISLYI 79
           +T RG +   + + + ++  + + G      I    +  I   L  ++  +P   I L +
Sbjct: 37  ETTRGTK---VIAMVHRQETMSLFGFPVLRYINIEDSEEI---LRAIKMTDPDTPIDLIL 90

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR----FALPNARI 135
           ++PGG+V A   I   +   K P++ F    A S G+L+  +  + +        P    
Sbjct: 91  HTPGGLVLASTQIAHALSNRKAPVTVFVPHFAMSGGTLIALSASRIVMDENAVLGPVDPQ 150

Query: 136 LLHQPSGGF-----SGQASDI--------ERHAQDIVKIKRRLNEIYVKNCG 174
           L   P+            +DI        +   + I+++   L  + VK  G
Sbjct: 151 LGEFPAASILRVVEQKDRNDIDDKTLIMADIAEKAILQLNHSLERLLVKRMG 202


>gi|16767960|gb|AAL28198.1| GH07905p [Drosophila melanogaster]
          Length = 188

 Score = 38.3 bits (88), Expect = 0.66,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 19/116 (16%)

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            +     P +    G + + G +L +A E   R  LPN  I +H     F          
Sbjct: 22  ALHLCGLPTAAAINGHSPAAGCVLATACE--YRVMLPNLFIGIHATRFSF---------- 69

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
                 I + +   Y          VE+ L++  + ++ EA D G+VD++  S+ +
Sbjct: 70  -----VISKWMMNSY--QSVLPRRIVERALNQGKLFASQEALDVGLVDEIACSKEE 118


>gi|33340432|gb|AAQ14783.1| unknown [Enterobacteria phage Felix 01]
          Length = 418

 Score = 38.3 bits (88), Expect = 0.66,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 27/55 (49%), Gaps = 9/55 (16%)

Query: 159 VKIKRRLNEIYVKNCG-------KTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
            ++++R+N+ Y    G        + E V K  + +   SA EA + G+++ ++ 
Sbjct: 185 ERLQKRINDTYATFTGFVAESRNLSEEAV-KNTEANVY-SAQEALELGLINSIMS 237


>gi|45550169|ref|NP_609324.2| CG4592 [Drosophila melanogaster]
 gi|45445074|gb|AAF52830.2| CG4592 [Drosophila melanogaster]
 gi|201066157|gb|ACH92488.1| FI09311p [Drosophila melanogaster]
          Length = 287

 Score = 38.3 bits (88), Expect = 0.69,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 19/116 (16%)

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            +     P +    G + + G +L +A E   R  LPN  I +H     F          
Sbjct: 121 ALHLCGLPTAAAINGHSPAAGCVLATACE--YRVMLPNLFIGIHATRFSF---------- 168

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
                 I + +   Y          VE+ L++  + ++ EA D G+VD++  S+ +
Sbjct: 169 -----VISKWMMNSY--QSVLPRRIVERALNQGKLFASQEALDVGLVDEIACSKEE 217


>gi|218442231|ref|YP_002380560.1| signal peptide peptidase SppA, 36K type [Cyanothece sp. PCC 7424]
 gi|218174959|gb|ACK73692.1| signal peptide peptidase SppA, 36K type [Cyanothece sp. PCC 7424]
          Length = 274

 Score = 38.3 bits (88), Expect = 0.70,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 68/189 (35%), Gaps = 32/189 (16%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
           + +TG I       +   L  +E +   + + L I+SPGG V     IY  ++ +   + 
Sbjct: 16  IEITGVIASETRKQVLKALDKVE-QKKYRALLLRIDSPGGTVGDSQEIYQALRRLHDKVK 74

Query: 105 TFCM--------GQAASMGS-LLLSA-----GEKGMRFALPNARILLHQPSGGF----SG 146
                       G    MG+  +++      G  G+     N   LL +    F    SG
Sbjct: 75  IVASFGNISASGGVYIGMGAQHIVANPGTITGSIGVIIRGNNLERLLDKIGISFKVVKSG 134

Query: 147 QASDIERHAQDIVKIKRRLNEIYVKNCGK------------TYEEVEKTLDRDHIMSASE 194
              DI    +++   ++ + +  +    +              E V+   D   I +  +
Sbjct: 135 PYKDILSFDRELTSEEQGILQEMIDISYQQFVQTVAQSRNLPLETVKTFAD-GRIFTGEQ 193

Query: 195 ACDWGVVDK 203
           A + GV+D+
Sbjct: 194 ALELGVIDR 202


>gi|240950308|ref|ZP_04754583.1| protease IV, signal peptide peptidase [Actinobacillus minor NM305]
 gi|240295210|gb|EER46018.1| protease IV, signal peptide peptidase [Actinobacillus minor NM305]
          Length = 622

 Score = 38.3 bits (88), Expect = 0.70,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 3/76 (3%)

Query: 51  IEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY---DTMQFIKPPISTFC 107
            +   A  +  QL  +  +   + + L INSPGG   A   I    + +Q    P+ +  
Sbjct: 344 EDTAGADTLIRQLQRVRQDKTVRGLILRINSPGGSALASELIRQEVEAIQQAGIPVVSSM 403

Query: 108 MGQAASMGSLLLSAGE 123
            G AAS G  + +  +
Sbjct: 404 GGMAASGGYWIAATSD 419


>gi|291286449|ref|YP_003503265.1| hypothetical protein Dacet_0511 [Denitrovibrio acetiphilus DSM
           12809]
 gi|290883609|gb|ADD67309.1| protein of unknown function DUF107 [Denitrovibrio acetiphilus DSM
           12809]
          Length = 412

 Score = 38.3 bits (88), Expect = 0.70,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 53/144 (36%), Gaps = 11/144 (7%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCM---GQAASMGSLLLSAGEKGMRFALPNA 133
           + +++PGG++ +   I   +     P+  F      +A S G+ ++ A          N 
Sbjct: 54  IQLDTPGGILDSTRGIVQVLLESDTPVIIFVSPQGARAGSAGTFIVLASHYAAMAEGTN- 112

Query: 134 RILLHQPSGGFSGQASDIE-RHAQDIVKIKRRLNEIYVKNCGKTYE-EVEKTLDRDHIMS 191
            I    P         D+E   AQ I            +  G+  E  V    D     +
Sbjct: 113 -IGAAHPVNVTG---KDLEGHMAQKIENDTVAFMRSIAEKRGRDVESAVSTVTDSKSY-T 167

Query: 192 ASEACDWGVVDKVLMSRIDIEEKS 215
           A EA   G+VD+V  +  ++ E +
Sbjct: 168 AKEALSLGLVDQVTNTIDEVSEAA 191


>gi|304314958|ref|YP_003850105.1| protease [Methanothermobacter marburgensis str. Marburg]
 gi|302588417|gb|ADL58792.1| predicted protease [Methanothermobacter marburgensis str. Marburg]
          Length = 287

 Score = 38.3 bits (88), Expect = 0.72,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 45/128 (35%), Gaps = 17/128 (13%)

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGM 126
            ++   K I L INSPGG   A   + D ++  + P+ ++      S   L  SA ++  
Sbjct: 68  NSDPSVKAIVLDINSPGGTPVASEELMDAIKKSEKPVVSWISDSGTSGAYLAASASDRI- 126

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
             A P+A +          G    I          ++     Y    G+      K +  
Sbjct: 127 -VASPSAWV----------GSIGVILDLTDLSEMYRQMGINKYAIKAGE-----YKDMGA 170

Query: 187 DHIMSASE 194
           D+ M   E
Sbjct: 171 DYRMITDE 178


>gi|209884363|ref|YP_002288220.1| fatty acid oxidation complex subunit alpha [Oligotropha
           carboxidovorans OM5]
 gi|209872559|gb|ACI92355.1| fatty acid oxidation complex subunit alpha [Oligotropha
           carboxidovorans OM5]
          Length = 693

 Score = 38.3 bits (88), Expect = 0.72,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 42/122 (34%), Gaps = 29/122 (23%)

Query: 92  IYDTMQFIKPPISTFCMGQAASMG-SLLLSA----GEKGMRFALPNARILLHQPSGGFSG 146
           I + ++ IK P      G     G  ++L+       +G RF  P   + LH    GF G
Sbjct: 113 ILNRLENIKLPTVAVIHGFCLGGGLEVVLACNMRIAIEGARFGFPEILLGLHP---GFGG 169

Query: 147 QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
            A      A  +      +  +     GKT E             A +A   G+VD V  
Sbjct: 170 TAR-----ATHLFNPLEAMTMML---TGKTVE-------------ARKAKALGLVDAVTQ 208

Query: 207 SR 208
            R
Sbjct: 209 ER 210


>gi|262872|gb|AAB24780.1| stress protein G7=ClpP homolog {N-terminal} [Bacillus subtilis,
          IS58, Peptide Partial, 21 aa]
          Length = 21

 Score = 38.3 bits (88), Expect = 0.72,   Method: Composition-based stats.
 Identities = 15/21 (71%), Positives = 19/21 (90%)

Query: 16 LGLVPMVVEQTNRGERSYDIY 36
          + L+P V+EQTNRGER+YDIY
Sbjct: 1  MNLIPTVIEQTNRGERAYDIY 21


>gi|284054392|ref|ZP_06384602.1| hypothetical protein AplaP_23348 [Arthrospira platensis str.
           Paraca]
          Length = 31

 Score = 38.3 bits (88), Expect = 0.73,   Method: Composition-based stats.
 Identities = 8/18 (44%), Positives = 16/18 (88%)

Query: 190 MSASEACDWGVVDKVLMS 207
           MSA+EA ++G++D+V++ 
Sbjct: 1   MSAAEAQEYGLIDQVILK 18


>gi|261403174|ref|YP_003247398.1| signal peptide peptidase SppA, 36K type [Methanocaldococcus
           vulcanius M7]
 gi|261370167|gb|ACX72916.1| signal peptide peptidase SppA, 36K type [Methanocaldococcus
           vulcanius M7]
          Length = 311

 Score = 38.3 bits (88), Expect = 0.73,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 69/197 (35%), Gaps = 37/197 (18%)

Query: 50  QIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG--MAIYDTMQFIKPPISTFC 107
             E   A      L  LE +N  K + L +NSPGG V A   +A        K P+  + 
Sbjct: 63  PSEKKDARYYINLLDKLEKDNSVKGVLLIVNSPGGEVIASEKLARKVAELAKKKPVVVYV 122

Query: 108 MGQAAS---MGSLLLSA---------GEKGMRFALPNARILLH----QPSGGFSGQASDI 151
               AS   M S+  +          G  G+R  + +   L+       +   +G+  DI
Sbjct: 123 EDLDASGAYMASVPANYIVAEKHSIVGSIGVRMDIIHYYGLMKKLGINVTTIKAGKYKDI 182

Query: 152 -----ERHAQDIVKIKRRLNEIY-------VKNCGKTYE---EVEKTLDRDHIMSASEAC 196
                    ++   +++ +NE Y        K          ++        I S  +A 
Sbjct: 183 GSPYRPMTKEEKEYLQKMINETYIDFVKWVAKYRHLPLNYTFKIAD----GKIYSGEDAK 238

Query: 197 DWGVVDKVLMSRIDIEE 213
             G+VD+V      +++
Sbjct: 239 KVGLVDEVGTEETALKK 255


>gi|218515924|ref|ZP_03512764.1| periplasmic protein-like protein [Rhizobium etli 8C-3]
          Length = 211

 Score = 38.3 bits (88), Expect = 0.73,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 50/134 (37%), Gaps = 16/134 (11%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           +++NS GG + AG+ I   ++      +T      AS  +L   AG    RF  P + I 
Sbjct: 34  VFLNSEGGDLKAGIEIGRAIRLRGFATATPPGTLCASACALTWLAGS--QRFLQPESNIG 91

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRL---NEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
            H       G+AS+       +     +L   +           E +         ++A+
Sbjct: 92  FHAAYRVVDGKASESGVANALVGAYLNQLGLSDTAIAYVTSAPPEGIA-------WLTAA 144

Query: 194 EACDWGV----VDK 203
           +A   G+    +D+
Sbjct: 145 KAHAVGITYDAIDE 158


>gi|41058189|gb|AAR99138.1| RE09736p [Drosophila melanogaster]
          Length = 287

 Score = 38.3 bits (88), Expect = 0.73,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 19/116 (16%)

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            +     P +    G + + G +L +A E   R  LPN  I +H     F          
Sbjct: 121 ALHLCGLPTAAAINGHSPAAGCVLATACE--YRVMLPNLFIGIHATRFSF---------- 168

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
                 I + +   Y          VE+ L++  + ++ EA D G+VD++  S+ +
Sbjct: 169 -----VISKWMMNSY--QSVLPRRIVERALNQGKLFASQEALDVGLVDEIACSKEE 217


>gi|167645285|ref|YP_001682948.1| signal peptide peptidase SppA, 67K type [Caulobacter sp. K31]
 gi|167347715|gb|ABZ70450.1| signal peptide peptidase SppA, 67K type [Caulobacter sp. K31]
          Length = 595

 Score = 38.3 bits (88), Expect = 0.73,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 54/182 (29%), Gaps = 37/182 (20%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP---PISTFCMGQAA 112
           +  +   L     +   K I   ++SPGG  TA   I   ++  +    P+       AA
Sbjct: 327 SDQVSKALYDAIDDKDVKAIVFRVSSPGGSDTASEQILAAVKAARKAGKPVVVSMGTYAA 386

Query: 113 SMGSLL------------------------LSAGEKGMRFALPNARILLHQPSGGFSGQA 148
           S G  +                         + GE   RF +   ++ +     G  G  
Sbjct: 387 SGGYWISSGASAIVAEPTTLTGSIGVFGGKFALGEALARFGVDTRQVHVGGDYAGAFGTG 446

Query: 149 SDIERHAQDIVKIKRRLNEIYVKNCGK-------TYEEVEKTLDRDHIMSASEACDWGVV 201
                      K    ++ IY    G+         E V +        +  +A   G+V
Sbjct: 447 EGF--TPDQRAKFSAWMDRIYAGFVGRVAEGRHLPPERVREIAKGRVW-TGVQAKQLGLV 503

Query: 202 DK 203
           D+
Sbjct: 504 DE 505


>gi|89094371|ref|ZP_01167312.1| peptidase, putative [Oceanospirillum sp. MED92]
 gi|89081430|gb|EAR60661.1| peptidase, putative [Oceanospirillum sp. MED92]
          Length = 349

 Score = 38.3 bits (88), Expect = 0.74,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 8/88 (9%)

Query: 44  IVFVTGQI---EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           I+ V G I   ++  A  I   L     E   K I L INSPGG       IYD ++ ++
Sbjct: 100 IIEVKGPISADDEANADSIIWSLREAFKEEQAKAIILRINSPGGSPVQSGYIYDEIKRLR 159

Query: 101 -----PPISTFCMGQAASMGSLLLSAGE 123
                 P+        AS    + +A +
Sbjct: 160 QIYTDKPVYAVITDIGASGAYYIAAAAD 187


>gi|171915196|ref|ZP_02930666.1| hypothetical protein VspiD_28515 [Verrucomicrobium spinosum DSM
           4136]
          Length = 335

 Score = 38.3 bits (88), Expect = 0.76,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 29/71 (40%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             + A    L+    QK + L+I S GG   A + I + ++     I+     + AS  +
Sbjct: 48  NDVAAFFEVLKNLGHQKHLYLFIKSNGGNGQAALRIVNLLRQYATKITALVPLECASAAT 107

Query: 117 LLLSAGEKGMR 127
           ++    ++   
Sbjct: 108 MMAIGADEIKM 118


>gi|109157467|pdb|2DEO|A Chain A, 1510-N Membrane Protease Specific For A Stomatin Homolog
           From Pyrococcus Horikoshii
 gi|109157468|pdb|2DEO|B Chain B, 1510-N Membrane Protease Specific For A Stomatin Homolog
           From Pyrococcus Horikoshii
          Length = 230

 Score = 38.3 bits (88), Expect = 0.78,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 57/143 (39%), Gaps = 15/143 (10%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM---GQAASMGSLLLSAGEKGMRFALP 131
           I + +++PGG   A   I   +Q  K P+  +       AAS G+ +       +    P
Sbjct: 42  IIIELDTPGGRADAXXNIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSH--LIAXAP 99

Query: 132 NARILLHQPSGGFSGQASDIE----RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187
              I   +P  G+S   S IE         I  IK        +  G+     E+ + +D
Sbjct: 100 GTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKS-----LAQESGRNATIAEEFITKD 154

Query: 188 HIMSASEACDWGVVDKVLMSRID 210
             ++  EA  +GV+ +V+   I+
Sbjct: 155 LSLTPEEALKYGVI-EVVARDIN 176


>gi|14520806|ref|NP_126281.1| putative protease [Pyrococcus abyssi GE5]
 gi|5458022|emb|CAB49512.1| Putative protease [Pyrococcus abyssi GE5]
          Length = 335

 Score = 38.3 bits (88), Expect = 0.78,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 2/83 (2%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--P 101
           ++ + G I+   A  I   +  +   +  K + L+I SPGG V     IY+ ++ +    
Sbjct: 93  VLPIIGPIDSSSALGIIKAIREIRGNDTIKGVLLWIESPGGYVGPVREIYNELKKLGYLK 152

Query: 102 PISTFCMGQAASMGSLLLSAGEK 124
           PI  +  G A S    +  A  +
Sbjct: 153 PIVAYVSGYAYSGAYYIACAARE 175


>gi|14591350|ref|NP_143428.1| protease IV [Pyrococcus horikoshii OT3]
 gi|3257998|dbj|BAA30681.1| 334aa long hypothetical protease IV [Pyrococcus horikoshii OT3]
          Length = 334

 Score = 38.3 bits (88), Expect = 0.78,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 2/83 (2%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF--IKP 101
           I+ + G I+D  A  +   +  +   +  K + ++I SPGG V     IY  ++      
Sbjct: 92  ILPIFGPIDDESALNVIEVIRRIRENDTIKGVLVWIESPGGFVGPVREIYIELKKLDYIK 151

Query: 102 PISTFCMGQAASMGSLLLSAGEK 124
           P+  +  G A S G  +  A ++
Sbjct: 152 PVIAYVSGYAYSGGYYIACAAKE 174


>gi|296333303|ref|ZP_06875756.1| putative membrane bound hydrolase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675192|ref|YP_003866864.1| putative membrane bound hydrolase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296149501|gb|EFG90397.1| putative membrane bound hydrolase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413436|gb|ADM38555.1| putative membrane bound hydrolase [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 437

 Score = 38.3 bits (88), Expect = 0.79,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 3/90 (3%)

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           ++ L    E     I L IN+PGG+V + + I D++   + P++ +   +A S G+ +  
Sbjct: 51  SRSLQDAKEAHADHIILDINTPGGLVKSAIDIADSITESEIPVTAYVNKRALSAGAYIAL 110

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASD 150
             +    +  P  ++          G A+D
Sbjct: 111 QAD--NIYMAPGGKMGAA-AIIDGKGNAAD 137


>gi|288918792|ref|ZP_06413137.1| Enoyl-CoA hydratase/isomerase [Frankia sp. EUN1f]
 gi|288349754|gb|EFC83986.1| Enoyl-CoA hydratase/isomerase [Frankia sp. EUN1f]
          Length = 247

 Score = 38.3 bits (88), Expect = 0.79,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 44/122 (36%), Gaps = 25/122 (20%)

Query: 89  GMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQ---PSGGFS 145
             AI D +     P+     G A   G+ +  A +  +R A  + +I   Q         
Sbjct: 80  MRAICDRLAAFPAPVIAAVNGHALGGGAEVAVAAD--IRVAADDIKIGFTQSTLAIMPAW 137

Query: 146 GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           G A   ER A  +   +     + +   G              +++A+EA   G+VD+VL
Sbjct: 138 GGA---ERLAALVGPGRA----LLLAGTG-------------RVLTAAEALGLGLVDQVL 177

Query: 206 MS 207
             
Sbjct: 178 PR 179


>gi|283852484|ref|ZP_06369752.1| protein of unknown function DUF107 [Desulfovibrio sp. FW1012B]
 gi|283572092|gb|EFC20084.1| protein of unknown function DUF107 [Desulfovibrio sp. FW1012B]
          Length = 455

 Score = 38.3 bits (88), Expect = 0.79,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 56/142 (39%), Gaps = 15/142 (10%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCM---GQAASMGSLLLSAGEKGMRFALPNA 133
           + +++PGG +     +   M   + P+  +      +AAS G  L++A    +    P  
Sbjct: 80  VRLDTPGGSIATMRRMVAAMLNARIPVVLWVAPSGARAASAGVFLMAAAT--VSAMAPQT 137

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIY----VKNCGKTYEEVEKTLDRDHI 189
            I    P G   GQ  ++++ A    K +  L  +           T        +  + 
Sbjct: 138 TIGSASPIGP-GGQ--ELDKTAA--KKTQNDLESLLRGVTALRGRNTAWFRSAVTEASN- 191

Query: 190 MSASEACDWGVVDKVLMSRIDI 211
           ++A EA    VVD + +SR D+
Sbjct: 192 LTADEAVRERVVDYIAVSREDL 213


>gi|315230791|ref|YP_004071227.1| membrane-bound ClpP-class protease [Thermococcus barophilus MP]
 gi|315183819|gb|ADT84004.1| membrane-bound ClpP-class protease [Thermococcus barophilus MP]
          Length = 449

 Score = 38.3 bits (88), Expect = 0.79,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 54/134 (40%), Gaps = 7/134 (5%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM---GQAASMGSLLLSAGEKGMRFALP 131
           I + +++PGG   A   I   +Q  K P+  +       AAS G+ +       +    P
Sbjct: 56  IIIELDTPGGRGDAMQNIIQRIQTAKVPVIIYVYPSGAMAASAGTYIALGSH--LIAMAP 113

Query: 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS 191
              I   +P  G+S   S IE  A+ I        +   +  G+     EK +  D  ++
Sbjct: 114 GTGIGACRPILGYSQNGSIIEAPAK-ITNFYVAYIKSLAEASGRNATIAEKFITEDLSLT 172

Query: 192 ASEACDWGVVDKVL 205
             EA  + V+ +V+
Sbjct: 173 PEEALKYHVI-EVI 185


>gi|319788342|ref|YP_004147817.1| signal peptide peptidase SppA, 67K type [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317466854|gb|ADV28586.1| signal peptide peptidase SppA, 67K type [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 635

 Score = 38.3 bits (88), Expect = 0.80,   Method: Composition-based stats.
 Identities = 47/214 (21%), Positives = 77/214 (35%), Gaps = 40/214 (18%)

Query: 42  ERIVFVTGQIEDHMATLICAQLLFLEAENPQ-KEISLYINSPGGVVTAGMAIY---DTMQ 97
           E  +    Q    +     + LL    E+   K + L ++SPGG V A   I      ++
Sbjct: 346 EGEITGGDQPAGTIGGESTSALLRQAREDEDIKAVVLRVDSPGGEVFASEQIRREVALLK 405

Query: 98  FIKPPISTFCMGQAASMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFS 145
               P+       AAS G  +               G  G+   +PN    L +      
Sbjct: 406 AAGKPVVVSMGDLAASGGYWISMNADRIYADPSTITGSIGIFGLVPNFTRTLDKIGVHTD 465

Query: 146 G-------QASDIERHAQ-DIVK-IKRRLNEIYVKNCGK---TYEEVEKTLD---RDHIM 190
           G        A D+ R    ++ + I+  +N+ Y    GK     E   + +D   R  + 
Sbjct: 466 GVGTTRYAGAFDVTRPLDPEVGRVIQSVINKGYADFIGKVADARERSVEDIDQVARGRVW 525

Query: 191 SASEACDWGVVDKV---------LMSRIDIEEKS 215
           S ++A D G+VD +           SR+D+EE  
Sbjct: 526 SGAQALDRGLVDAMGGLADAIADAASRVDLEEGK 559


>gi|212703644|ref|ZP_03311772.1| hypothetical protein DESPIG_01689 [Desulfovibrio piger ATCC 29098]
 gi|212672939|gb|EEB33422.1| hypothetical protein DESPIG_01689 [Desulfovibrio piger ATCC 29098]
          Length = 363

 Score = 38.3 bits (88), Expect = 0.80,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 72/201 (35%), Gaps = 43/201 (21%)

Query: 39  LLKERI--VFVTGQIEDHMATLICAQLLF---LEAENPQKEISLYINSPGGVVTAGMAIY 93
           L  ERI  V VTG I       I AQL +   L      K + + ++SPGG   A   +Y
Sbjct: 110 LGSERIALVRVTGPIM-----DIDAQLRWIDKLGRMPGVKGVLVRVDSPGGGAAASQELY 164

Query: 94  DTMQFIKPP--ISTFCMGQAASMGSLLLSAGEK------------GMRFALP-------- 131
           + +  +     I+      AAS G ++  AG++            G+R  +P        
Sbjct: 165 EALARLGKDKPIAVSMGSTAASGGLMVSMAGKRVFANASTVTGSIGVRMDIPQIRGLLDK 224

Query: 132 ---NARILLHQPSGGFSG-----QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183
                + L   P            A +       +  +  +  +I  +  G+  +     
Sbjct: 225 LGLGRQTLTTAPYKDAGSMLEPLTADEKAYFQGVLKDMHEQFVDIVAQ--GRHMDRTRAA 282

Query: 184 -LDRDHIMSASEACDWGVVDK 203
            L    I +  EA + G+VD+
Sbjct: 283 RLATGKIFTGREAVELGLVDE 303


>gi|320161989|ref|YP_004175214.1| hypothetical protein ANT_25880 [Anaerolinea thermophila UNI-1]
 gi|319995843|dbj|BAJ64614.1| hypothetical protein ANT_25880 [Anaerolinea thermophila UNI-1]
          Length = 280

 Score = 38.3 bits (88), Expect = 0.81,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 17/129 (13%)

Query: 14  VFLGLVPMVVEQT--------------NRGERSYDIYSRLLKERIVFVTGQIEDHMATLI 59
           +   L PMV +Q                RG R   +  R  +E +  +   I  ++    
Sbjct: 12  IVSSLAPMVRQQIIASTRLNLLRRLEEKRGSRVIGLIHR--QESMSLLGFPIGRYIDIDD 69

Query: 60  CAQLLF-LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLL 118
             Q+L  ++  +P+  I + +++PGG+V A   I + +     P++ F    A S G+L+
Sbjct: 70  SEQVLRAIKLTDPKVPIDIILHTPGGLVLAAEQIANALSRHPAPVTVFVPHYAMSGGTLI 129

Query: 119 LSAGEKGMR 127
             A  + + 
Sbjct: 130 ALAANQIVM 138


>gi|301166743|emb|CBW26320.1| putative membrane protein [Bacteriovorax marinus SJ]
          Length = 439

 Score = 38.3 bits (88), Expect = 0.82,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 58/157 (36%), Gaps = 7/157 (4%)

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM---GQAASMGS 116
             Q      +     I + +N+PGG+V+    I   +     P+  +       A S G+
Sbjct: 53  IEQGFNRATKQKSDAILIKMNTPGGLVSTTKEILTLIGNSDKPVIIWVSPEGASATSAGA 112

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
           ++ SA    +        I    P    SG     +  ++ +  +K  L +   +  G+ 
Sbjct: 113 IISSAAH--VLLMSDGTNIGAATPI-QMSGNIEQSDLRSKSVNDLKA-LVQSLAQTRGRN 168

Query: 177 YEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213
                  +++     A+ A +  ++D++L  +  + +
Sbjct: 169 ATLFGDMIEKASSFEANVAKEKKLIDEILNKKSQLSK 205


>gi|296109597|ref|YP_003616546.1| signal peptide peptidase SppA, 36K type [Methanocaldococcus
           infernus ME]
 gi|295434411|gb|ADG13582.1| signal peptide peptidase SppA, 36K type [Methanocaldococcus
           infernus ME]
          Length = 300

 Score = 37.9 bits (87), Expect = 0.83,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 70/188 (37%), Gaps = 31/188 (16%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAG--MAIYDTMQFIKPPISTFCMGQAAS 113
           A      L  LE +   K + L INSPGG V A   +A        K P+  +     AS
Sbjct: 58  ANYYINLLDKLEKDKSVKGVLLIINSPGGEVVASEELAKKVKEVSEKKPVVAYIQTIGAS 117

Query: 114 MGSLLLSA------------GEKGMRFALPNARILLH----QPSGGFSGQASDI-----E 152
              ++ S+            G  G+R  + +   L+       +   +G+  DI      
Sbjct: 118 GAYMVASSSNYIVAQRHSVVGSIGVRMDIIHFYGLMKKLGINVTTIKAGKYKDIGSPYRP 177

Query: 153 RHAQDIVKIKRRLNEIY-------VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
              ++   +++ +NE Y        KN   +    +K  +    +   +A   G+VD+V 
Sbjct: 178 MTPEEKKILEKMINETYNYFIMWVAKNRNLSINYTKKIAEGKIYL-GEDAKKVGLVDEVG 236

Query: 206 MSRIDIEE 213
              + +++
Sbjct: 237 DEEVALKK 244


>gi|224159034|ref|XP_002338039.1| predicted protein [Populus trichocarpa]
 gi|222870394|gb|EEF07525.1| predicted protein [Populus trichocarpa]
          Length = 251

 Score = 37.9 bits (87), Expect = 0.83,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 45/143 (31%), Gaps = 26/143 (18%)

Query: 79  INSPGGVVTAGMAIYDTMQ---FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           I+S      A    Y T +       P+     G     G+ L  A +   R A P +  
Sbjct: 71  ISSARDAEDAFDTFYSTYKCVWDSPKPVIAAINGYCLGGGNELAMACD--FRIATPESTF 128

Query: 136 LLHQPSGGF--SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSAS 193
              +   G    G A+        + K +  +        G T              +A 
Sbjct: 129 GQPEVKLGIVPGGGATYRLATLVGLQKAREII------FTGNTI-------------NAK 169

Query: 194 EACDWGVVDKVLMSRIDIEEKSK 216
           EA   G++D ++ S   IEE  K
Sbjct: 170 EALSLGLIDSIISSEHLIEEAEK 192


>gi|296109420|ref|YP_003616369.1| protein of unknown function DUF114 [Methanocaldococcus infernus ME]
 gi|295434234|gb|ADG13405.1| protein of unknown function DUF114 [Methanocaldococcus infernus ME]
          Length = 271

 Score = 37.9 bits (87), Expect = 0.84,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 28/65 (43%)

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           L  + +    K I L I++PGG+V A   I   ++             A S G+L+  A 
Sbjct: 75  LRAIRSAPKDKPIDLIIHTPGGLVLAASQIARALKNHPAETRVIVPHYAMSGGTLIALAA 134

Query: 123 EKGMR 127
           +K + 
Sbjct: 135 DKIIM 139


>gi|163753142|ref|ZP_02160266.1| protease IV [Kordia algicida OT-1]
 gi|161326874|gb|EDP98199.1| protease IV [Kordia algicida OT-1]
          Length = 589

 Score = 37.9 bits (87), Expect = 0.84,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 60/168 (35%), Gaps = 35/168 (20%)

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP--PISTFCMGQAASMGSLLLSAGEKGM 126
           +   K I L +NSPGG   A   I+  ++  K   P+       AAS G  +    +K  
Sbjct: 340 DENVKAIVLRVNSPGGSALASELIWREIELTKKEKPVIVSMGDLAASGGYYIACNADKI- 398

Query: 127 RFALPNAR---ILLHQPSGGFSGQASDIERHAQDIVK--------------------IKR 163
            +A PN     I +          A D+  +A+ +                      IK 
Sbjct: 399 -YAEPNTITGSIGVFGTIPNMHKLAEDLGINAEQVGTNKNAVDYSIFEPMSDEQRALIKE 457

Query: 164 RLNEIYVKNC-------GKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            + +IY           G T E V++        + ++A   G+VD++
Sbjct: 458 GIEDIYDLFTQRVADGRGMTQEAVDEIGQGRVW-TGNDAIKIGLVDEI 504


>gi|332175408|gb|AEE24662.1| SNARE associated Golgi protein-like protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 720

 Score = 37.9 bits (87), Expect = 0.85,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 32/55 (58%), Gaps = 7/55 (12%)

Query: 148 ASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD---HIMSASEACDWG 199
           A D E++ +DI +++    ++  ++ G++ E+VE+    D   + + + +A ++G
Sbjct: 396 AGDCEQNKKDITRVRH---DLLAEHTGRSIEQVEEIFANDDPLNRLLSDQA-EYG 446


>gi|299535801|ref|ZP_07049122.1| hypothetical protein BFZC1_07248 [Lysinibacillus fusiformis ZC1]
 gi|298729001|gb|EFI69555.1| hypothetical protein BFZC1_07248 [Lysinibacillus fusiformis ZC1]
          Length = 442

 Score = 37.9 bits (87), Expect = 0.85,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 8/107 (7%)

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           EN  + I L I++PGG V A   I   M   +     +    A S G+ L    ++   +
Sbjct: 58  ENNAEAIILEIHTPGGFVNAANDIAMLMDATQIRTIAYINKDAHSAGAFLALHADEI--Y 115

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK 175
            +PN  I          G A+D++ ++  + ++K        +  G+
Sbjct: 116 MVPNGTIGAAAVIDSA-GNAADLKANSAWLAQMKAA-----AETSGR 156


>gi|6723197|dbj|BAA89607.1| capsid protein [Bacteriophage WO]
          Length = 118

 Score = 37.9 bits (87), Expect = 0.87,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           +E   +++ ++     ++  +N G + E++ ++ +        +A + G+ D V
Sbjct: 2   LESLQKEVGRLYEMFVQLIARNRGLSIEKI-RSTEAGLYF-GEKAVEIGLADGV 53


>gi|311029988|ref|ZP_07708078.1| L-serine dehydratase, iron-sulfur-dependent subunit alpha [Bacillus
           sp. m3-13]
          Length = 295

 Score = 37.9 bits (87), Expect = 0.89,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 143 GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD-HIMSASEACDWGV 200
            F   A  IE       KI   + E  ++  G+T EE+ + +D++  IM   +A + G+
Sbjct: 1   MFRNVAELIEIAQSSNKKISEIMIEQEMEFTGRTREEIFEQMDKNLTIM--EQAVERGL 57


>gi|52548349|gb|AAU82198.1| protease IV [uncultured archaeon GZfos11H11]
          Length = 251

 Score = 37.9 bits (87), Expect = 0.89,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 57/176 (32%), Gaps = 29/176 (16%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMG 115
           +TLI   +  +E +   K +   INSPGG   A   I   ++ +  P   +     AS  
Sbjct: 34  STLIIKDIEEVENKRKIKTVIFEINSPGGTPFASKEIATCIENMDKPAIAWVREYGASGA 93

Query: 116 SLLLS------------AGEKGMRFALPNARILLHQPSGGFSGQASDI------------ 151
             + S             G  G     P+   L+ +         + I            
Sbjct: 94  YWIASACDEIVADELSTVGSIGAMSIRPDIGELMKKFGIDVETLRTGIYKGMGLPYEKPT 153

Query: 152 ----ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
               E   +++ +I+        KN      ++++       +   EA + G++D 
Sbjct: 154 EEERELMKKELDEIQDNFLNAVAKNRKLDDAKMKELSTAKVYL-GREAKEMGLIDH 208


>gi|309790773|ref|ZP_07685320.1| signal peptide peptidase SppA, 36K type [Oscillochloris trichoides
           DG6]
 gi|308227192|gb|EFO80873.1| signal peptide peptidase SppA, 36K type [Oscillochloris trichoides
           DG6]
          Length = 342

 Score = 37.9 bits (87), Expect = 0.90,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 66/178 (37%), Gaps = 32/178 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM---QFIKPPISTFCMGQAAS 113
             I +Q+     +   + + L ++SPGG V A   I+  +   +     +       AAS
Sbjct: 98  NDILSQIKQAAKDPLVRAVVLRVDSPGGGVVASSEIHAELVKLREAGKTLVVSMGATAAS 157

Query: 114 MGSLLLSAGEKGM----RFALPNARILLHQPSGGF------------SGQASDI-----E 152
            G  + +  E+       F      IL     G              SG   DI     E
Sbjct: 158 GGYYISAPAERIYANKDTFTGSLGVILSLTNYGEAFDNLGLKSYVYKSGNLKDIGSPLRE 217

Query: 153 RHAQDIVKIKRRLNEIY-------VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
             A++   ++R ++E Y       V+  G   E V +  D   I + ++A + G+VD+
Sbjct: 218 PTAEENAVLQRVVDEAYQGFVDVIVEGRGLPRERVLEIAD-GRIYTGAQALELGLVDE 274


>gi|313680083|ref|YP_004057822.1| hypothetical protein Ocepr_1192 [Oceanithermus profundus DSM 14977]
 gi|313152798|gb|ADR36649.1| protein of unknown function DUF107 [Oceanithermus profundus DSM
           14977]
          Length = 426

 Score = 37.9 bits (87), Expect = 0.94,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 69/174 (39%), Gaps = 24/174 (13%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPI 103
           +V + G I++ +A  +   L+  E E     + L+I++PGG V A M I D +     P 
Sbjct: 24  VVQIEGTIDNPLAAYVEDALVRAEREGASG-VVLWIDTPGGRVDAAMRISDAVLQTPLPT 82

Query: 104 STFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF---SGQASDIERHAQDIVK 160
                  A S G+L+  + E+     LP + I    P          A+D     + I  
Sbjct: 83  LAVVK-NAFSAGALIALSAEQV--AMLPGSEIGAALPIVVTPVTEPTAAD----RKFISA 135

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLD------------RDHIMSASEACDWGVVD 202
           +K +      +  G+  E  E  +D                ++A++A + GV D
Sbjct: 136 LKGKF-RAVAEARGRPVELAEAMVDPEIEVEGLAGKGEPLTLTAAKAVELGVAD 188


>gi|269124167|ref|YP_003306744.1| peptidase S49 [Streptobacillus moniliformis DSM 12112]
 gi|268315493|gb|ACZ01867.1| peptidase S49 [Streptobacillus moniliformis DSM 12112]
          Length = 552

 Score = 37.9 bits (87), Expect = 0.94,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 63/180 (35%), Gaps = 37/180 (20%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
             +  ++  L+     K + L INSPGG       IY  ++ +  PI       AAS G 
Sbjct: 307 DDMLEKIESLQEIKNLKGVILRINSPGGSALESERIYKELKNLDVPIFISMSSVAASGGY 366

Query: 117 LLLS------------AGEKGMRFALPNARILLH----QPSGGFSGQASDI--------- 151
            + +             G  G+    P    + +          SG A++I         
Sbjct: 367 YISTVAKKVFLNPSTITGSIGVVSMYPTFDEISNKVGLNIETVNSGVATEIFDLKQPLTD 426

Query: 152 ERHAQDIVKIKRRLNEIYVKN-------CGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           E   + I  ++    E + K+         +  E++ +       +  +EA + G+ DK+
Sbjct: 427 ELREKLIQSMRDVYIE-FKKHVMTARVMTDEGLEKIAQ---GKIWL-GNEAVEIGLADKI 481


>gi|240103706|ref|YP_002960015.1| Signal peptide peptidase SppA (sppA) [Thermococcus gammatolerans
           EJ3]
 gi|239911260|gb|ACS34151.1| Signal peptide peptidase SppA (sppA) [Thermococcus gammatolerans
           EJ3]
          Length = 329

 Score = 37.9 bits (87), Expect = 0.95,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 2/83 (2%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ--FIKP 101
           +V + G IE   A      L  L  ++    + L+I SPGG V A   IY  +Q    K 
Sbjct: 89  LVPIFGVIEGQTALNTVTTLEKLMKDDSVGGVLLWIESPGGDVGAVREIYHEVQVLRAKK 148

Query: 102 PISTFCMGQAASMGSLLLSAGEK 124
           P+  +  G AAS G  +    E+
Sbjct: 149 PVVAYTGGIAASGGYYIAVGAER 171


>gi|167854498|ref|ZP_02477279.1| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Haemophilus
           parasuis 29755]
 gi|167854253|gb|EDS25486.1| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Haemophilus
           parasuis 29755]
          Length = 621

 Score = 37.9 bits (87), Expect = 0.95,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 18/137 (13%)

Query: 34  DIYSRLLKERI--------VFVTGQIEDHMATLICAQLLFLEAENPQ-KEISLYINSPGG 84
           D ++ + K++I        + +    ++   +    +LL    E+   + + L INSPGG
Sbjct: 317 DRFNVVGKDKIAIVNVEGAIVLGESDDEVAGSDTIVKLLRKAREDDDVRGVVLRINSPGG 376

Query: 85  VVTAGMAIY---DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141
              A   I    + +Q    P+     G AAS G  + +  +K    A P         S
Sbjct: 377 SAMASELIRQEVEDLQQAGKPVVASMGGMAASGGYWIAATSDKI--IASPTTLTG----S 430

Query: 142 GGFSGQASDIERHAQDI 158
            G  G A   E+ A+ +
Sbjct: 431 IGIFGLAVSFEKTAKKL 447


>gi|126652819|ref|ZP_01724964.1| YqeZ [Bacillus sp. B14905]
 gi|126590355|gb|EAZ84475.1| YqeZ [Bacillus sp. B14905]
          Length = 428

 Score = 37.9 bits (87), Expect = 0.97,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 8/109 (7%)

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           EN  K I L I++PGG V A   I   M         F    A S G+ L    ++   +
Sbjct: 44  ENNAKAIILDIHTPGGFVNAASDIAMLMDATDIRTIAFINKDAHSAGAFLALHADEI--Y 101

Query: 129 ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTY 177
            +PN  I          G A+D++ ++  + ++         +  G+  
Sbjct: 102 MVPNGTIGAAAVIDSA-GNAADLKANSAWLAQMSAA-----AETSGRDP 144


>gi|313677800|ref|YP_004055796.1| short chain enoyl-CoA hydratase [Marivirga tractuosa DSM 4126]
 gi|312944498|gb|ADR23688.1| short chain enoyl-CoA hydratase [Marivirga tractuosa DSM 4126]
          Length = 257

 Score = 37.9 bits (87), Expect = 0.97,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 62/177 (35%), Gaps = 38/177 (21%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           R++ +TG  +   A     Q+        +  I + +N            +D ++  K P
Sbjct: 50  RVIILTGNEKAFAAGADIKQM------AGKTAIDM-LNVDQFST------WDQIKKTKKP 96

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIK 162
           +     G A   G  L    +            ++        GQ  +I+          
Sbjct: 97  LIAAVSGFALGGGCELAMTCD------------MIVASESAKFGQ-PEIKIGVMPGAGGT 143

Query: 163 RRLNEIYVKNCGKTYEEVEKTLD---RDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           +RL        GK      K ++     + +SA EA  +G+V+KV+ + + +E  ++
Sbjct: 144 QRLTRAI----GK-----AKAMELVLTGNFISAEEAMHYGLVNKVVPTEMYLEAAAE 191


>gi|307611846|emb|CBX01559.1| hypothetical protein LPW_32461 [Legionella pneumophila 130b]
          Length = 501

 Score = 37.9 bits (87), Expect = 0.98,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 67/176 (38%), Gaps = 14/176 (7%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
           + + G I    A  +   +    +      I + I++PGG+  +   I         PI 
Sbjct: 95  LNIKGPIGPATADYLERGIK---SAQDADLIVILIDTPGGLYDSTRNIIQLFLLSDVPIV 151

Query: 105 TFCM---GQAASMGSLLLSAGEKGMRFALPNARILLHQP----SGGFSGQASDIERHAQD 157
           T+      +AAS G+ L       +    P  ++    P    +G   G+  + ++   +
Sbjct: 152 TYVSPTGARAASAGTYL--MYASTLAAMAPGTQMGAASPVSLGTGFSEGEKDEKKKSTME 209

Query: 158 IVKIKRRLNEI--YVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
                  +  I    +  G+  +  EK +     ++A+EA   GVV+ +  +R D+
Sbjct: 210 NKVTHDAVATIRSLAQLRGRDLDFAEKAVTEGKSITANEALSKGVVNYIAKNRDDL 265


>gi|254501657|ref|ZP_05113808.1| peptidase, S49 (protease IV) family [Labrenzia alexandrii DFL-11]
 gi|222437728|gb|EEE44407.1| peptidase, S49 (protease IV) family [Labrenzia alexandrii DFL-11]
          Length = 328

 Score = 37.9 bits (87), Expect = 0.98,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFI--KPPISTFCMGQAASMGSLLLSAGE 123
           K + + INSPGG  T G AIY+ ++ +  K PI         S G L+  + +
Sbjct: 82  KGVIVSINSPGGSTTGGEAIYNALRKLSEKKPIVAEMRTIGTSAGYLIAMSAD 134


>gi|54295797|ref|YP_128212.1| hypothetical protein lpl2887 [Legionella pneumophila str. Lens]
 gi|53755629|emb|CAH17131.1| hypothetical protein lpl2887 [Legionella pneumophila str. Lens]
          Length = 501

 Score = 37.9 bits (87), Expect = 0.98,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 67/176 (38%), Gaps = 14/176 (7%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
           + + G I    A  +   +    +      I + I++PGG+  +   I         PI 
Sbjct: 95  LNIKGPIGPATADYLERGIK---SAQDADLIVILIDTPGGLYDSTRNIIQLFLLSDVPIV 151

Query: 105 TFCM---GQAASMGSLLLSAGEKGMRFALPNARILLHQP----SGGFSGQASDIERHAQD 157
           T+      +AAS G+ L       +    P  ++    P    +G   G+  + ++   +
Sbjct: 152 TYVSPTGARAASAGTYL--MYASTLAAMAPGTQMGAASPVSLGTGFSEGEKDEKKKSTME 209

Query: 158 IVKIKRRLNEI--YVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
                  +  I    +  G+  +  EK +     ++A+EA   GVV+ +  +R D+
Sbjct: 210 NKVTHDAVATIRSLAQLRGRDLDFAEKAVTEGKSITANEALSKGVVNYIAKNRDDL 265


>gi|219872141|ref|YP_002476516.1| protease IV, signal peptide peptidase [Haemophilus parasuis SH0165]
 gi|219692345|gb|ACL33568.1| protease IV, signal peptide peptidase [Haemophilus parasuis SH0165]
          Length = 621

 Score = 37.9 bits (87), Expect = 0.99,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 12/103 (11%)

Query: 34  DIYSRLLKERI--------VFVTGQIEDHMATLICAQLLFLEAENPQ-KEISLYINSPGG 84
           D ++ + K++I        + +    ++   +    +LL    E+   + + L INSPGG
Sbjct: 317 DRFNVVGKDKIAIVNVEGAIVLGESDDEVAGSDTIVKLLRKAREDDDVRGVVLRINSPGG 376

Query: 85  VVTAGMAIY---DTMQFIKPPISTFCMGQAASMGSLLLSAGEK 124
              A   I    + +Q    P+     G AAS G  + +  +K
Sbjct: 377 SAMASELIRQEVEDLQQAGKPVVASMGGMAASGGYWIAATSDK 419


>gi|124516220|gb|EAY57728.1| protein of unknown function [Leptospirillum rubarum]
          Length = 277

 Score = 37.9 bits (87), Expect = 0.99,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 48/108 (44%), Gaps = 11/108 (10%)

Query: 25  QTNRGERSYDIYSRLLKERIVFVTG-----QIEDHMATLICAQLLFLEAENPQKEISLYI 79
           +T RG +   + + + ++  + + G      I    +  I   L  ++  +P   I L +
Sbjct: 37  ETTRGTK---VIAMVHRQETMSLFGFPVLRYINIEDSEEI---LRAIKMTDPDTPIDLIL 90

Query: 80  NSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           ++PGG+V A   I   +   K P++ F    A S G+L+  +  + + 
Sbjct: 91  HTPGGLVLASTQIAHALSNRKAPVTVFVPHFAMSGGTLIALSANRIVM 138


>gi|251789811|ref|YP_003004532.1| signal peptide peptidase SppA, 67K type [Dickeya zeae Ech1591]
 gi|247538432|gb|ACT07053.1| signal peptide peptidase SppA, 67K type [Dickeya zeae Ech1591]
          Length = 616

 Score = 37.9 bits (87), Expect = 1.00,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM---QFIKPPISTFCMGQAA 112
                AQ+     +   K I L +NSPGG VTA   I   +   +    P+     G AA
Sbjct: 347 GDTTAAQIRDARLDPKVKAIILRVNSPGGSVTASELIRSELMAARQAGKPVVVSMGGMAA 406

Query: 113 SMG 115
           S G
Sbjct: 407 SGG 409


>gi|320664993|gb|EFX32107.1| peptidase S49 [Escherichia coli O157:H7 str. LSU-61]
          Length = 439

 Score = 37.9 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 58/181 (32%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 108 NGIIALLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 167

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
             LL S             G  G+  A  N             L++  S    G      
Sbjct: 168 CQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 227

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   ++   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 228 PDDVRETLQSRMDATRQMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 285

Query: 207 S 207
           S
Sbjct: 286 S 286


>gi|302035808|ref|YP_003796130.1| peptidase S49, putative signal peptide peptidase SppA [Candidatus
           Nitrospira defluvii]
 gi|300603872|emb|CBK40204.1| Peptidase S49, putative signal peptide peptidase SppA [Candidatus
           Nitrospira defluvii]
          Length = 299

 Score = 37.9 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 52/136 (38%), Gaps = 11/136 (8%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMG 115
           A    ++L         K I L I+SPGG V     I+D ++ +K   +       ASMG
Sbjct: 60  AQATISELKHYSENPLVKAIVLRIDSPGGGVVPSQEIHDAVKRVKNKSNKAV---IASMG 116

Query: 116 SLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK 175
           ++  S G      A    RI+ +   G  +G    I   A     +K+   E  V   G+
Sbjct: 117 TVAASGG---YYIAAATDRIIANP--GTLTGSIGVIMEMANFEGLMKKVGVEGVVIKSGR 171

Query: 176 TYEE---VEKTLDRDH 188
             +    + K  D + 
Sbjct: 172 FKDVGSPLRKMSDEER 187


>gi|218660307|ref|ZP_03516237.1| hypothetical protein RetlI_12159 [Rhizobium etli IE4771]
          Length = 19

 Score = 37.9 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/19 (100%), Positives = 19/19 (100%)

Query: 21 MVVEQTNRGERSYDIYSRL 39
          MVVEQTNRGERSYDIYSRL
Sbjct: 1  MVVEQTNRGERSYDIYSRL 19


>gi|127511388|ref|YP_001092585.1| enoyl-CoA hydratase [Shewanella loihica PV-4]
 gi|126636683|gb|ABO22326.1| Enoyl-CoA hydratase/isomerase [Shewanella loihica PV-4]
          Length = 269

 Score = 37.9 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 40/108 (37%), Gaps = 19/108 (17%)

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQ 156
           + +  P+     G     G+ +    +  MR A P+ R+ + +      G   D+     
Sbjct: 100 RRLPVPVICVLEGICYGGGTQIALGAD--MRIAAPDCRLSIMEAK---WGLVPDMA---- 150

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            +V ++  + +        T E +           A +A D+G+V +V
Sbjct: 151 GLVGLRELVGKDVAMQLTMTAEVI----------DAEQAKDYGLVTQV 188


>gi|167949878|ref|ZP_02536952.1| hypothetical protein Epers_26827 [Endoriftia persephone
          'Hot96_1+Hot96_2']
          Length = 52

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/20 (80%), Positives = 19/20 (95%)

Query: 16 LGLVPMVVEQTNRGERSYDI 35
          LGLVP+V+EQT RGERS+DI
Sbjct: 15 LGLVPIVIEQTARGERSFDI 34


>gi|86157946|ref|YP_464731.1| signal peptide peptidase A [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774457|gb|ABC81294.1| signal peptide peptidase A, Serine peptidase, MEROPS family S49
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 316

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 71/188 (37%), Gaps = 31/188 (16%)

Query: 46  FVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI-KPPIS 104
            + G  E      I  ++     +   K + + ++SPGG V A   I+D ++ + +  + 
Sbjct: 60  TIGGGPERDETEDILKRIRRFADDGDLKAVVIRVDSPGGSVGASQEIHDEVKRLAQKKVV 119

Query: 105 TFCMGQAASMGSLLLS-------------AGEKGMRFALPNARILLHQ----PSGGFSGQ 147
              MG  A+ G L +S              G  G+    PN + L  +         +G+
Sbjct: 120 VCSMGNLAASGGLYVSVACPKIVANPGTLTGSIGVISQFPNVKDLAEKLGVKVETVKTGK 179

Query: 148 ASDIERHAQDIVKIKRRLNEIYVKNC-GK-----------TYEEVEKTLDRDHIMSASEA 195
             D     +D+    R   +  V+N  G+              +V    D   +++ ++A
Sbjct: 180 LKDAGNPFRDMTPEDRAYWQGLVENTLGQFVKAVAEGRKLDEAKVRAIAD-GRVLTGAQA 238

Query: 196 CDWGVVDK 203
            + G+VD+
Sbjct: 239 KEAGLVDQ 246


>gi|238794514|ref|ZP_04638123.1| Protease 4 [Yersinia intermedia ATCC 29909]
 gi|238726197|gb|EEQ17742.1| Protease 4 [Yersinia intermedia ATCC 29909]
          Length = 616

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 63/178 (35%), Gaps = 31/178 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYD---TMQFIKPPISTFCMGQAA 112
              + AQ+     +   K + L +NSPGG V+A   I      ++    P+     G AA
Sbjct: 347 GDSLAAQIRQARLDPKIKAVILRVNSPGGSVSASELIRSELAALRAANKPLVVSMGGMAA 406

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DI----- 151
           S G  + +             G  G+   +   +  L        G A+    DI     
Sbjct: 407 SGGYWISTPANYIVASPSTLTGSIGIFGVINTFQNSLESIGVHTDGVATSPLADISVTKN 466

Query: 152 ------ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
                 +    +I    +   ++   +  KT E+V++       +   +A + G+VD+
Sbjct: 467 LPPEFSQMMQINIENGYKTFIDLVATSRHKTPEQVDQIAQGHVWL-GIDAKNNGLVDQ 523


>gi|320643596|gb|EFX12745.1| peptidase S49 [Escherichia coli O157:H- str. 493-89]
 gi|320648937|gb|EFX17541.1| peptidase S49 [Escherichia coli O157:H- str. H 2687]
          Length = 439

 Score = 37.5 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 58/181 (32%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A L    ++     I L +++PGG+V       D +  ++   P+         S 
Sbjct: 108 NGIIALLQQAASDPMVDGILLDMDTPGGMVAGAFDCADIIARVRDIKPVWALANDMNCSA 167

Query: 115 GSLLLS------------AGEKGMRFALPN----------ARILLHQPSGGFSGQA---- 148
             LL S             G  G+  A  N             L++  S    G      
Sbjct: 168 CQLLASAASRRLVTQTARTGSIGVMMAHSNYGAALEKQGVEITLIYSGSHKVDGNPYSHL 227

Query: 149 -SDIERHAQ-DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+    Q  +   ++   +      G + + V    +     S  EA D G+ D+++ 
Sbjct: 228 PDDVRETLQSRMDATRQMFAQKVSAYTGLSVQAVL-DTEAAVY-SGQEAIDAGLADELVN 285

Query: 207 S 207
           S
Sbjct: 286 S 286


>gi|322420579|ref|YP_004199802.1| signal peptide peptidase SppA, 36K type [Geobacter sp. M18]
 gi|320126966|gb|ADW14526.1| signal peptide peptidase SppA, 36K type [Geobacter sp. M18]
          Length = 293

 Score = 37.5 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 62/177 (35%), Gaps = 31/177 (17%)

Query: 58  LICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ--FIKPPISTFCMGQAAS-- 113
            I  QL  L  +   K +   ++SPGGVV     IY  ++       +       AAS  
Sbjct: 56  EIIRQLRELRKDEDVKAVVFRVDSPGGVVGPSQEIYAAVKDLAKVKKVVVSMGSVAASGG 115

Query: 114 -----MGSLLLSA-----GEKGMRFALPNARILLHQPSGGF----SGQASDIERHAQDIV 159
                  +L+ +      G  G+     N   L+ +         +G+  D    A+ + 
Sbjct: 116 YYVSAPATLIYANPGTITGSIGVLMKFSNIEGLMDKVGMKAFTIKTGKFKDTGSPARSMT 175

Query: 160 KIKRRLNEIYVKNC-GK-----------TYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             +R + +  + +  G+             E+V    D   I S  +A    +VD++
Sbjct: 176 GEERAMLQGVIDSTHGQFVQAVAQGRKLPVEQVRGIAD-GRIFSGEQALALKLVDRI 231


>gi|57640065|ref|YP_182543.1| hypothetical protein TK0130 [Thermococcus kodakarensis KOD1]
 gi|57158389|dbj|BAD84319.1| hypothetical protein, conserved, DUF114 family [Thermococcus
           kodakarensis KOD1]
          Length = 280

 Score = 37.5 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           L  + +    K I L I++PGG+V A   I   ++             A S G+L+  A 
Sbjct: 80  LRAIRSAPKDKPIDLIIHTPGGLVLAATQIARALKEHPAETRVIVPHYAMSGGTLIALAA 139

Query: 123 EKGMRFALPNARI 135
           +K      PNA +
Sbjct: 140 DKI--IMDPNAVL 150


>gi|182682844|ref|YP_001836968.1| putative ATP-dependent Clp protease [Enterobacteria phage EPS7]
 gi|182630556|gb|ACB97488.1| putative ATP-dependent Clp protease [Enterobacteria phage EPS7]
          Length = 199

 Score = 37.5 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 61/135 (45%), Gaps = 9/135 (6%)

Query: 64  LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           + L       EI+L IN PGG V     + + +   +  +    +G +AS    +  +  
Sbjct: 40  MILMQAGEDDEINLMINGPGGYVDTAAQLSNLIANCRGTVIGHLLGPSASAYCTIFLSCH 99

Query: 124 KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK-IKRRLNEIYVKNCGKTYEEVEK 182
             +    P+A ++ H  SGGF  +  +I++  +   + ++  + ++Y      + +E+E 
Sbjct: 100 GWVVH--PHATLMGHTFSGGFCEKGQEIKKAYESYNQFVEDMMLDVYFPFF--SIDEIE- 154

Query: 183 TLDRDH---IMSASE 194
            + +++    +++ E
Sbjct: 155 DMVKENKNIYLNSKE 169


>gi|298529223|ref|ZP_07016626.1| protein of unknown function DUF107 [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510659|gb|EFI34562.1| protein of unknown function DUF107 [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 431

 Score = 37.5 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 54/140 (38%), Gaps = 9/140 (6%)

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM---GQAASMGSLLLSAGEKGMRFALPN 132
            + +++PGG+V +   +   +     P+  +      +A S G  L++A +       P 
Sbjct: 64  MIRLDTPGGLVESMRNMVKDILASDLPVIVWVDPPGARATSAGVFLVAASDHA--VMSPQ 121

Query: 133 ARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT-LDRDHIMS 191
             I    P     G+  D E     I+     L     K+ G+  E  EK   +  +I  
Sbjct: 122 TTIGSASPVT-MGGEEQD-ETMQSKIINEMLSLVRTVAKDKGRNVEWYEKAVTEAANI-D 178

Query: 192 ASEACDWGVVDKVLMSRIDI 211
           + EA    V+D +  S  D+
Sbjct: 179 SEEALQLRVIDHIATSTDDL 198


>gi|291278650|ref|YP_003495485.1| hypothetical protein DEFDS_0218 [Deferribacter desulfuricans SSM1]
 gi|290753352|dbj|BAI79729.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 271

 Score = 37.5 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 33/65 (50%)

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           L  ++  +    I L +++PGG+V A + I   ++  K  ++ F    A S G+L+  A 
Sbjct: 74  LRAIQMTDKDVPIDLILHTPGGLVLASLQIARALKKHKGKVTVFVPHCAMSGGTLISLAA 133

Query: 123 EKGMR 127
           ++ + 
Sbjct: 134 DEIVM 138


>gi|83593953|ref|YP_427705.1| peptidase S49 [Rhodospirillum rubrum ATCC 11170]
 gi|83576867|gb|ABC23418.1| Peptidase S49 [Rhodospirillum rubrum ATCC 11170]
          Length = 593

 Score = 37.5 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 52/160 (32%), Gaps = 34/160 (21%)

Query: 75  ISLYINSPGGVVTAGMAIYDTM---QFIKPPISTFCMGQAASMGSLLLSAGEKGM----- 126
           I L I+SPGG       ++  +   +    P+       AAS G  +     K +     
Sbjct: 346 IVLRIDSPGGSYVGSDLVWRAVSRARQHGLPVIASMGDVAASGGYYMAMGANKIVAQPGT 405

Query: 127 ------RFALPNARILLHQPSGGFSG------QA-----SDIERHAQDIVKIKRRLNEIY 169
                   A         +  G   G       A     +D    A    ++ + L+ IY
Sbjct: 406 LTGSIGVVAGKFTIAKASEDLGIAWGGVEAGRNAALFSLTDPFDEAGQ-RRMDQILDAIY 464

Query: 170 VKNCGK-------TYEEVEKTLDRDHIMSASEACDWGVVD 202
               GK       + E +E+   R  + +  +A   G+VD
Sbjct: 465 ADFTGKAAAGRGLSPEAIEEA-ARGRVWTGEDALAHGLVD 503


>gi|85059328|ref|YP_455030.1| protease 4 [Sodalis glossinidius str. 'morsitans']
 gi|84779848|dbj|BAE74625.1| protease IV [Sodalis glossinidius str. 'morsitans']
          Length = 616

 Score = 37.5 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 60/181 (33%), Gaps = 35/181 (19%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM---QFIKPPISTFCMGQAA 112
                 Q+     +   K I   +NSPGG VTA   I   +   +    P+     G AA
Sbjct: 346 GDTTADQIRDARMDPDIKAIVFRVNSPGGSVTASEVIRSELAAARAAGKPVVISMGGIAA 405

Query: 113 S------------MGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQAS----DIERH-- 154
           S            + S     G  G+   +      L        G A+    D+     
Sbjct: 406 SGGYWVSTPANYIIASASTLTGSIGIFGVVNTVENSLDSIGVHTDGVATSPLADVSLTKT 465

Query: 155 --AQDIVKIKRRLNEIY---------VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
             A+    ++  +   Y          ++  KT EE++K       +  S+A   G+VD+
Sbjct: 466 LPAEFSQMMQLSVENGYRNFITLVAQSRH--KTPEEIDKIGQGHVWI-GSDAVQNGLVDR 522

Query: 204 V 204
           V
Sbjct: 523 V 523


>gi|256820055|ref|YP_003141334.1| signal peptide peptidase SppA, 67K type [Capnocytophaga ochracea
           DSM 7271]
 gi|256581638|gb|ACU92773.1| signal peptide peptidase SppA, 67K type [Capnocytophaga ochracea
           DSM 7271]
          Length = 590

 Score = 37.5 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 57/178 (32%), Gaps = 31/178 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ--FIKPPISTFCMGQAASM 114
             I   L         K I L INSPGG   A   ++  ++    K  +       AAS 
Sbjct: 332 ETIIRALRKASDNKDIKAIVLRINSPGGDALASELMHREIEVTKKKKKVYVSMGNYAASG 391

Query: 115 GSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQASD--------IERH 154
           G  +               G  G+   +PN   L           ++          ++ 
Sbjct: 392 GYYIACNANRIFAEAGTITGSIGVFGVIPNVNALATNWGINAETVSTHPNAQFYSVFQKP 451

Query: 155 AQDIVK-IKRRLNEIY-------VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            +   K +   + ++Y        K  GKT  +++         S  EA   G+VD++
Sbjct: 452 TEQFKKEMTESIEQVYTVFLDRVAKGRGKTVAQIDSIAQGRVW-SGKEALANGLVDEI 508


>gi|315303364|ref|ZP_07873981.1| putative signal peptide peptidase SppA [Listeria ivanovii FSL
           F6-596]
 gi|313628267|gb|EFR96783.1| putative signal peptide peptidase SppA [Listeria ivanovii FSL
           F6-596]
          Length = 337

 Score = 37.5 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 63/176 (35%), Gaps = 36/176 (20%)

Query: 63  LLFLEAENPQKEIS---LYINSPGGVVTAGMAIYDTMQFIKP----PISTFCMGQAASMG 115
           +  LE     + I    LY+NSPGG V     I D +  IK     P        AAS G
Sbjct: 93  MDQLEQIRDDESIRGVLLYVNSPGGGVMESAQIRDKILQIKKERSIPFYVSMGSMAASGG 152

Query: 116 SLLLSAGEKGM--RFALPNARILLHQPSGGF--------------SGQASDIERHAQDIV 159
             + +  +K    +  L  +  ++ Q                   SG   DI    + + 
Sbjct: 153 YYISAPADKIFASKETLTGSLGVIMQGYDYSELMKKLGISDNTIKSGTHKDIMSATRPMT 212

Query: 160 KIKRRLNEIYVKNC------------GKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
           + ++++ +  + +             G + E+V K  D   I    +A   G++D+
Sbjct: 213 EDEKKIMQSMIDDSYNEFVQVVASGRGMSEEQVRKIAD-GRIYDGRQAKANGLIDE 267


>gi|238757018|ref|ZP_04618206.1| Protease 4 [Yersinia aldovae ATCC 35236]
 gi|238704848|gb|EEP97377.1| Protease 4 [Yersinia aldovae ATCC 35236]
          Length = 616

 Score = 37.5 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 61/178 (34%), Gaps = 31/178 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY---DTMQFIKPPISTFCMGQAA 112
              + AQ+     +   K + L +NSPGG V+A   I      ++    P+     G AA
Sbjct: 347 GDTLAAQIRQARLDPKIKAVVLRVNSPGGSVSASELIRSELTALRAANKPLVVSMGGMAA 406

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----DIERHAQ 156
           S G  + +             G  G+   +   +  L        G A+    DI     
Sbjct: 407 SGGYWISTPANYIVASPSTLTGSIGIFGVINTFQNTLESIGVHTDGVATSPLADISITKN 466

Query: 157 -----------DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
                      +I    +   ++   +  KT E+V++       +   +A   G+VD+
Sbjct: 467 LPPEFAQMMQINIENGYKTFIDLVATSRHKTPEQVDQIAQGHVWI-GVDAKSNGLVDQ 523


>gi|315225469|ref|ZP_07867282.1| signal peptide peptidase SppA [Capnocytophaga ochracea F0287]
 gi|314944567|gb|EFS96603.1| signal peptide peptidase SppA [Capnocytophaga ochracea F0287]
          Length = 590

 Score = 37.5 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 57/178 (32%), Gaps = 31/178 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ--FIKPPISTFCMGQAASM 114
             I   L         K I L INSPGG   A   ++  ++    K  +       AAS 
Sbjct: 332 ETIIRALRKASDNKDIKAIVLRINSPGGDALASELMHREIEVTKKKKKVYVSMGNYAASG 391

Query: 115 GSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQASD--------IERH 154
           G  +               G  G+   +PN   L           ++          ++ 
Sbjct: 392 GYYIACNANRIFAEAGTITGSIGVFGVIPNVNALATNWGINAETVSTHPNAQFYSVFQKP 451

Query: 155 AQDIVK-IKRRLNEIY-------VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            +   K +   + ++Y        K  GKT  +++         S  EA   G+VD++
Sbjct: 452 TEQFKKEMTESIEQVYTVFLDRVAKGRGKTVAQIDSIAQGRVW-SGKEALANGLVDEI 508


>gi|262341043|ref|YP_003283898.1| naphthoate synthase [Blattabacterium sp. (Blattella germanica) str.
           Bge]
 gi|262272380|gb|ACY40288.1| naphthoate synthase [Blattabacterium sp. (Blattella germanica) str.
           Bge]
          Length = 276

 Score = 37.5 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 13/52 (25%)

Query: 169 YVKNCGKTYEEVEKTLDRDHIM-----SASEACDWGVVDKVLMSRIDIEEKS 215
             ++ G+          R+        +A EA   G+++KV+ SR  +EE++
Sbjct: 162 LARHIGQKKT-------REMWFLCKKYTAKEALKMGLINKVV-SRKKLEEET 205


>gi|46401779|ref|YP_006870.1| putative ATP-dependent Clp protease [Enterobacteria phage T5]
 gi|42540988|gb|AAS19389.1| putative Clp-like protease [Enterobacteria phage T5]
 gi|45774957|gb|AAS77089.1| putative ATP-dependent Clp protease [Enterobacteria phage T5]
 gi|51511995|gb|AAU05194.1| putative Clp protease [Enterobacteria phage T5]
          Length = 199

 Score = 37.5 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 2/102 (1%)

Query: 64  LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           + L   N   EI+L IN PGG V     + + +   +  +    +G +AS    +  +  
Sbjct: 40  MVLMQANEDDEINLMINGPGGYVDTAAQLSNLIANCRGTVIGHLIGPSASAYCTIFLSCH 99

Query: 124 KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRL 165
             +    P+A ++ H  SGGF  +  +I++  +   K    +
Sbjct: 100 GWVVH--PHATLMGHTFSGGFCEKGQEIKKAYESYNKFVEDM 139


>gi|326632935|ref|YP_004306524.1| putative ATP-dependent Clp protease [Enterobacteria phage SPC35]
 gi|321272129|gb|ADW80021.1| putative ATP-dependent Clp protease [Enterobacteria phage SPC35]
          Length = 193

 Score = 37.5 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 2/102 (1%)

Query: 64  LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           + L   N   EI+L IN PGG V     + + +   +  +    +G +AS    +  +  
Sbjct: 39  MVLMQANEDDEINLMINGPGGYVDTAAQLSNLIANCRGTVIGHLVGPSASAYCTIFLSCH 98

Query: 124 KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRL 165
             +    P+A ++ H  SGGF  +  +I++  +   K    +
Sbjct: 99  GWVVH--PHATLMGHTFSGGFCEKGQEIKKAYESYNKFVEDM 138


>gi|222100633|ref|YP_002535201.1| periplasmic serine protease [Thermotoga neapolitana DSM 4359]
 gi|221573023|gb|ACM23835.1| periplasmic serine protease [Thermotoga neapolitana DSM 4359]
          Length = 327

 Score = 37.5 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 31/65 (47%)

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           L  ++       I L I++PGG+V A   I   ++  K  ++ F    A S G+L+  A 
Sbjct: 122 LRAIKLTPEDMPIDLIIHTPGGLVLAAEQIARALKKHKGKVTVFVPHYAMSGGTLIALAA 181

Query: 123 EKGMR 127
           ++ + 
Sbjct: 182 DEVVM 186


>gi|147678370|ref|YP_001212585.1| periplasmic serine proteases [Pelotomaculum thermopropionicum SI]
 gi|146274467|dbj|BAF60216.1| Periplasmic serine proteases [Pelotomaculum thermopropionicum SI]
          Length = 288

 Score = 37.5 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 3/83 (3%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
           + ++  I    +  +   L  +        I L +++PGG+V A   I   +Q     ++
Sbjct: 69  IPISRYINIEDSEAV---LRAIRLTPDDMPIDLVLHTPGGLVLASEQIARALQKHPAKVT 125

Query: 105 TFCMGQAASMGSLLLSAGEKGMR 127
            F    A S G+++  A ++ + 
Sbjct: 126 VFVPHYAMSGGTMIALAADEIVM 148


>gi|9630469|ref|NP_046900.1| gp5 [Enterobacteria phage N15]
 gi|3192688|gb|AAC19041.1| gp5 [Enterobacteria phage N15]
          Length = 447

 Score = 37.5 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 62/181 (34%), Gaps = 32/181 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V+      D +  ++   PI         S 
Sbjct: 110 NGIIARLQQAISDPGVDGILLDMDTPGGMVSGAFDCADIIARMRDIKPIWALANDMNCSA 169

Query: 115 GSLLLS------------AGEKGMRFALPNARILLH----QPSGGFSGQA---------- 148
           G L+ S             G  G+  A  N    L     + S  +SG            
Sbjct: 170 GQLIASSASRRLVTQTARTGSIGVMMAHSNYGAALKTNGVEVSLIYSGDHKVDGNPYEKL 229

Query: 149 -SDIE-RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
             D+       I   ++   E      G + ++V    +     S  E+ D G+ D+++ 
Sbjct: 230 PEDVRADFQTRIDATRQMFAEKVSAYTGMSVQDVL-DTEAAVF-SGQESVDNGLADELVN 287

Query: 207 S 207
           +
Sbjct: 288 N 288


>gi|83590616|ref|YP_430625.1| hypothetical protein Moth_1781 [Moorella thermoacetica ATCC 39073]
 gi|83573530|gb|ABC20082.1| Protein of unknown function DUF114 [Moorella thermoacetica ATCC
           39073]
          Length = 276

 Score = 37.5 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
           + ++  I    +  I   L  +        I L +++PGG+V A   I   +      ++
Sbjct: 59  IPLSRYINIEDSEQI---LRAIRLTPDDMPIDLVLHTPGGLVLAAEQIAHAILKHPAKVT 115

Query: 105 TFCMGQAASMGSLLLSAGEKGMR 127
            +    A S G+L+  A ++ + 
Sbjct: 116 VYVPHYAMSGGTLIALAADEIVM 138


>gi|296285017|ref|ZP_06863015.1| hypothetical protein CbatJ_15425 [Citromicrobium bathyomarinum
           JL354]
          Length = 574

 Score = 37.5 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 68/177 (38%), Gaps = 19/177 (10%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK---- 100
           + + G ++   A +       L  + P   I + + +  G      ++ + ++ ++    
Sbjct: 401 IRLYGTMD---AAMYAEFSEMLSEQEPGGPIVIALTTMDGDPEIARSMAEDIRLLRDRGR 457

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH-----QPSGGFSGQ----ASDI 151
             I         S G L ++A   G R+     ++L+      QP     G     AS +
Sbjct: 458 REIIFLGKTAVYSAGVLFMAAFPVGQRYLTRATKLLITENKRAQPIQLPGGSLRSVASQL 517

Query: 152 ERHAQDIVKIKRRLN---EIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           E   ++I +   + +       +    + +E+ +    D  ++ASEA   G++ +V+
Sbjct: 518 EHARREIQREIDQEDDDFRAISEGSNVSVQELREKAPGDWHITASEAKAMGLIAEVV 574


>gi|16125179|ref|NP_419743.1| signal peptide peptidase SppA [Caulobacter crescentus CB15]
 gi|221233913|ref|YP_002516349.1| signal peptide peptidase [Caulobacter crescentus NA1000]
 gi|13422197|gb|AAK22911.1| signal peptide peptidase SppA [Caulobacter crescentus CB15]
 gi|220963085|gb|ACL94441.1| signal peptide peptidase [Caulobacter crescentus NA1000]
          Length = 594

 Score = 37.5 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 57/185 (30%), Gaps = 34/185 (18%)

Query: 52  EDHMATLICAQLLFLEAENPQ-KEISLYINSPGGVVTAGMAIYDTMQFI---KPPISTFC 107
           + ++ +   AQ      E+   K I   ++SPGG  TA   I   +Q       P+    
Sbjct: 321 DSNVYSDDVAQAFRAATEDKDVKAIVFRVSSPGGSDTASEQILAALQAAKKAGKPVVVSM 380

Query: 108 MGQAASMGSLL------------------------LSAGEKGMRFALPNARILL----HQ 139
              AAS G  +                         + GE   RF +    + +     Q
Sbjct: 381 GTYAASGGYWISSQADSIIAQPSTLTGSIGVYGGKFAIGEALARFGVDTKDLHVGADYSQ 440

Query: 140 PSGGFSGQASDIE-RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
             G   G   +   + A  + +I         +       +V +        +  +A   
Sbjct: 441 AFGAGEGFTPEQRAKFAGWMDRIYAGFITRVAEGRNLPPAKVREIAKGRVW-TGEQAKQL 499

Query: 199 GVVDK 203
           G+VD+
Sbjct: 500 GLVDE 504


>gi|220931192|ref|YP_002508100.1| periplasmic serine protease (ClpP class) [Halothermothrix orenii H
           168]
 gi|219992502|gb|ACL69105.1| periplasmic serine protease (ClpP class) [Halothermothrix orenii H
           168]
          Length = 268

 Score = 37.5 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 31/65 (47%)

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           L  +   +  K+I + I++PGG+V A   I   ++     ++      A S G+LL  A 
Sbjct: 74  LRAIRMTSDDKKIVIVIHTPGGLVLAAEQIAHAIKKHPSKVTVIVPHYAMSGGTLLALAA 133

Query: 123 EKGMR 127
           ++ + 
Sbjct: 134 DEIVM 138


>gi|329851486|ref|ZP_08266243.1| signal peptide peptidase SppA, 67K type [Asticcacaulis biprosthecum
           C19]
 gi|328840332|gb|EGF89904.1| signal peptide peptidase SppA, 67K type [Asticcacaulis biprosthecum
           C19]
          Length = 593

 Score = 37.5 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 60/188 (31%), Gaps = 47/188 (25%)

Query: 55  MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK---PPISTFCMGQA 111
           M+  +         +   K I   ++SPGG  TA   I + M+  K    P+       A
Sbjct: 319 MSDDVSEAFYTAIKDPKVKAIVFRVSSPGGSDTASAQIAEAMKDAKEAGKPVVVSMGDYA 378

Query: 112 ASMGSLLL------------------------SAGEKGMRFALPNARILLHQPSGGFSGQ 147
           AS G  +                         + G+   RF +    I +        G 
Sbjct: 379 ASGGYWIASGASAIVANPSTLTGSIGVFGGKFAIGDALARFGVDIKDIHV-------GGD 431

Query: 148 ASDIERHAQDIVKIKR-----RLNEIY-------VKNCGKTYEEVEKTLDRDHIMSASEA 195
            +++   A+     +R      +++IY               ++V +        + ++A
Sbjct: 432 YTEVFSEAKGFSPTQRAALSSWIDQIYNSFITHVAAGRNLPEDKVRELAKGRVW-TGAQA 490

Query: 196 CDWGVVDK 203
            +  +VDK
Sbjct: 491 VEHRLVDK 498


>gi|118430857|ref|NP_146927.2| enoyl-CoA hydratase/isomerase family protein [Aeropyrum pernix K1]
 gi|116062180|dbj|BAA78965.2| enoyl-CoA hydratase/isomerase family protein [Aeropyrum pernix K1]
          Length = 250

 Score = 37.5 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 31/126 (24%)

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGE-----KGMRFALPNARILLHQPSGGFSGQAS 149
            M   + PI     G A   G+ +L   +     +   FA P + I L  P     G++ 
Sbjct: 91  AMARCRRPIVAAVNGLAVGGGAEILLLADVVLASREAWFAFPESHIGLIPPLLSTLGRSV 150

Query: 150 DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209
             ER A+ +               G   +               EA   G+VD V+    
Sbjct: 151 FGERKARMLGI------------TGAKLDV-------------EEAKAMGLVDDVVEP-G 184

Query: 210 DIEEKS 215
           ++E K+
Sbjct: 185 ELEAKA 190


>gi|14520474|ref|NP_125949.1| hypothetical protein PAB2437 [Pyrococcus abyssi GE5]
 gi|5457689|emb|CAB49180.1| Hypothetical protein, DUF114 family [Pyrococcus abyssi GE5]
          Length = 280

 Score = 37.5 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
              K I L I++PGG+V A   I   ++             A S G+L+  A +K     
Sbjct: 87  PKDKPIDLIIHTPGGLVLAATQIAKALKDHPAETRVIVPHYAMSGGTLIALAADKI--IM 144

Query: 130 LPNARI 135
            P+A +
Sbjct: 145 DPHAVL 150


>gi|116328281|ref|YP_798001.1| enoyl-CoA hydratase/carnithine racemase [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116331007|ref|YP_800725.1| enoyl-CoA hydratase/carnithine racemase [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116121025|gb|ABJ79068.1| Enoyl-CoA hydratase/carnithine racemase [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116124696|gb|ABJ75967.1| Enoyl-CoA hydratase/carnithine racemase [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 255

 Score = 37.5 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 45/121 (37%), Gaps = 30/121 (24%)

Query: 102 PISTFCMGQAASMGSLLLSAGE------KGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           P+     G A  +G++L    +      K  R   P ++I ++ P+         + +  
Sbjct: 94  PVICAMNGHAMGLGAVLAIFSDYRIMIEKKGRIGFPESQIGINFPAVPGF-----MLKEI 148

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKS 215
             I K +  L        GK  +             A EA + G++D++  S  D+  ++
Sbjct: 149 VGITKARDLLY------SGKGLK-------------AEEALEIGLIDEISSSSEDLMARA 189

Query: 216 K 216
           +
Sbjct: 190 R 190


>gi|298708810|emb|CBJ30769.1| signal peptide peptidase [Ectocarpus siliculosus]
          Length = 625

 Score = 37.5 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 68/188 (36%), Gaps = 36/188 (19%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK---PPIST 105
           G  E   ++ +C +L  +  +     + L ++SPGG   A  +I   ++ ++    P+  
Sbjct: 329 GSTEQATSSALCKRLQEVIDDPSIGAVVLRVDSPGGSAVASDSIAAAVRRVRLAGKPVVC 388

Query: 106 FCMGQAASMGSLLLSAGEKGMRFALPNARI---------LLHQPSGGFSG-QASDIERHA 155
                AAS G ++ +A +     A P             L  Q      G Q   IE   
Sbjct: 389 SMGDLAASGGYMIAAACDTI--VAQPTTITGSIGVIAAKLSVQRLLKAWGIQVDSIELSE 446

Query: 156 QDIVK-------------IKRRLNEIYVKNCG-------KTYEEVEKTLDRDHIMSASEA 195
             +               +++R+ EIY    G        + +EV K        +  +A
Sbjct: 447 NHLAFSPLQEFSPQQRSLMEKRVGEIYEDFVGGVAAGRNMSVDEVLKVAKGRVW-TGRQA 505

Query: 196 CDWGVVDK 203
            D G+VD+
Sbjct: 506 LDRGLVDE 513


>gi|57241950|ref|ZP_00369890.1| protease IV (PspA) [Campylobacter upsaliensis RM3195]
 gi|57017142|gb|EAL53923.1| protease IV (PspA) [Campylobacter upsaliensis RM3195]
          Length = 293

 Score = 37.5 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 74/192 (38%), Gaps = 41/192 (21%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP--P 102
           + + G+I D  A  +  +++  + +   K +  +I+SPGG     M +   ++ +K   P
Sbjct: 49  IDLKGEILDTGA--VLEKIINAKNDPNIKGVLFFIDSPGGAFAPSMELALAIKDLKAQKP 106

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG-QASDIERHA------ 155
           + ++  G  AS GS L +       +A P A I          G   S++ +        
Sbjct: 107 VISYVAGTMAS-GSYL-AGVAVDKIYANPAAFIG--SIGVIAQGMNISELAQKIGVKEQT 162

Query: 156 ------------------QDIVKIKRRLNEIY-------VKNCGKTYEEVEKTLDRDHIM 190
                             ++   ++R +N  Y        K  G   +E EK  D    +
Sbjct: 163 IKAGTFKEAGTFTREWSEEERAYLQRLINNSYMLFVEFVAKERGLKVDEKEKWADARVFL 222

Query: 191 SASEACDWGVVD 202
            A+EA + G++D
Sbjct: 223 -ANEAKNLGLID 233


>gi|56752187|ref|YP_172888.1| protease IV [Synechococcus elongatus PCC 6301]
 gi|81300725|ref|YP_400933.1| signal peptide peptidase A [Synechococcus elongatus PCC 7942]
 gi|56687146|dbj|BAD80368.1| protease IV [Synechococcus elongatus PCC 6301]
 gi|81169606|gb|ABB57946.1| signal peptide peptidase A. Serine peptidase. MEROPS family S49
           [Synechococcus elongatus PCC 7942]
          Length = 270

 Score = 37.5 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 58/159 (36%), Gaps = 33/159 (20%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMG----QAASMGSLLLSAGEK-------- 124
           L I+SPGG V     IY+ ++ ++    T  +      +AS G  +    +K        
Sbjct: 47  LRIDSPGGTVGDSQEIYEALKRLRSQHQTKVIASFGNISASGGVYIGMGADKIVSNPGTI 106

Query: 125 ----GMRFALPNARILLHQPSGGF----SGQASDIERHAQDIVKIKRRLNEIYVKNCGK- 175
               G+     N   LL +    F    SG   DI    +++   ++ + +  +    + 
Sbjct: 107 TGSIGVILRGNNLERLLDRVGVSFKVIKSGPYKDILSFDRELTDNEKEILQNLIDISYQQ 166

Query: 176 -----------TYEEVEKTLDRDHIMSASEACDWGVVDK 203
                      T E V+   D   I +  +A   G++D+
Sbjct: 167 FVQTVADARQLTVETVKSFAD-GRIFTGEQALSLGLIDR 204


>gi|213019703|ref|ZP_03335508.1| putative minor capsid protein c [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|213019745|ref|ZP_03335549.1| putative minor capsid protein c [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|212994651|gb|EEB55295.1| putative minor capsid protein c [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|212994744|gb|EEB55387.1| putative minor capsid protein c [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 341

 Score = 37.5 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           +E   +++ ++     ++  +N G + E++ ++ +        +A + G+ D V
Sbjct: 183 LESLQKEVDRLYEMFVQLIARNRGLSIEKI-RSTEAGLYF-GEKAVEIGLADGV 234


>gi|254823026|ref|ZP_05228027.1| enoyl-CoA hydratase [Mycobacterium intracellulare ATCC 13950]
          Length = 231

 Score = 37.2 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 19/110 (17%)

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           +     P+   C G A +MG+ LLS+G+   R A     I   Q +    G    I   A
Sbjct: 89  LLSFPKPVVMACTGHAIAMGAFLLSSGDH--RVAAHAYNI---QANEVAIGMV--IPYAA 141

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            +I+K++   +  Y +  G                    A   G +D+++
Sbjct: 142 LEIMKLRLTPSG-YQQAAGLAK----------TFF-GETALAAGFIDEIV 179


>gi|190570700|ref|YP_001975058.1| Putative minor capsid protein c [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|190570754|ref|YP_001975112.1| Putative minor capsid protein c [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|190570768|ref|YP_001975126.1| Putative minor capsid protein c [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|190356972|emb|CAQ54360.1| Putative minor capsid protein c [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|190357026|emb|CAQ54419.1| Putative minor capsid protein c [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|190357040|emb|CAQ54434.1| Putative minor capsid protein c [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
          Length = 348

 Score = 37.2 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           +E   +++ ++     ++  +N G + E++ ++ +        +A + G+ D V
Sbjct: 190 LESLQKEVDRLYEMFVQLIARNRGLSIEKI-RSTEAGLYF-GEKAVEIGLADGV 241


>gi|182413480|ref|YP_001818546.1| hypothetical protein Oter_1662 [Opitutus terrae PB90-1]
 gi|177840694|gb|ACB74946.1| protein of unknown function DUF107 [Opitutus terrae PB90-1]
          Length = 493

 Score = 37.2 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 54/138 (39%), Gaps = 21/138 (15%)

Query: 79  INSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLH 138
           +++PGG +   M+I + +        T+    A S G+ + +  ++   FA P  +I   
Sbjct: 91  MDTPGGALDKTMSIMEAIGRFPGRTLTYVNTDAISAGAFISATTDEIW-FA-PRGKIGAA 148

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH---------- 188
            P G  SGQ  D     + +  +K  +     +  G   + V   +D D+          
Sbjct: 149 APVG-MSGQDIDKTMRQKVVSYLKAEV-RSLSEGKGYRGQVVSAMIDEDYELKIGDTVLK 206

Query: 189 ------IMSASE-ACDWG 199
                  ++ASE A  +G
Sbjct: 207 PKGELLTLTASEAAKTYG 224


>gi|152940719|gb|ABS44859.1| capsid protein [Wolbachia phage WO]
          Length = 134

 Score = 37.2 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 8/56 (14%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           +E   +++ ++     ++  +N G + E++ ++ +        +A + G+ D V  
Sbjct: 10  LESLQKEVGRLYEMFVQLIARNRGLSIEKI-RSTEAGLYF-GEKAVEIGLADGVTT 63


>gi|225849669|ref|YP_002729903.1| nodulation competitiveness protein NfeD [Persephonella marina
           EX-H1]
 gi|225645825|gb|ACO04011.1| nodulation competitiveness protein NfeD [Persephonella marina
           EX-H1]
          Length = 422

 Score = 37.2 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 66/174 (37%), Gaps = 20/174 (11%)

Query: 47  VTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTF 106
               +   M+  +   +   E E     I + I++PGG+ T+   I  T+     P+  +
Sbjct: 24  WNAPVTPVMSDYVKRVIHKAEVEKADAVIIM-IDTPGGLDTSMREIIKTIMNSSVPVVVY 82

Query: 107 CM---GQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKR 163
                 +AAS G+++  + +       P+  I    P         DIE   +     K+
Sbjct: 83  VYPPGSRAASAGAIITVSADIA--AMSPSTNIGSASPVQMGG---KDIEETMK-----KK 132

Query: 164 RLNEI------YVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
            +N++        K  G+  + + K +     ++A EA    V+D +     D+
Sbjct: 133 IINDMVAFVKGIAKEKGRNEKIIVKMVTESINLTAEEALKKNVIDIIATDLDDL 186


>gi|71661506|ref|XP_817773.1| GTP-binding protein [Trypanosoma cruzi strain CL Brener]
 gi|70882985|gb|EAN95922.1| GTP-binding protein, putative [Trypanosoma cruzi]
          Length = 394

 Score = 37.2 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 8/78 (10%)

Query: 125 GMRFALPNARILLHQPSGGFSGQASD---IERHAQDIVKIKRRLNEIYVKNCGKTYEEVE 181
           G      N   LL      F    S+   I +  + +VK+K  +++    + G+    V 
Sbjct: 208 GKEIDFLNTLQLLTAKPAIFLANMSEKDFIRQRGKWLVKLKEWIDQ----HTGEPLIPVS 263

Query: 182 KTLDRDHI-MSASEACDW 198
             ++ + + MS  EA ++
Sbjct: 264 AEMEANFLNMSPEEAEEY 281


>gi|332158438|ref|YP_004423717.1| hypothetical protein PNA2_0797 [Pyrococcus sp. NA2]
 gi|331033901|gb|AEC51713.1| hypothetical protein PNA2_0797 [Pyrococcus sp. NA2]
          Length = 280

 Score = 37.2 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
              K I L I++PGG+V A   I   ++             A S G+L+  A +K     
Sbjct: 87  PKDKPIDLIIHTPGGLVLAATQIAKALKDHPAETRVIVPHYAMSGGTLIALAADKI--IM 144

Query: 130 LPNARI 135
            P+A +
Sbjct: 145 DPHAVL 150


>gi|86607602|ref|YP_476364.1| S49 family peptidase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556144|gb|ABD01101.1| peptidase S49 (protease IV) family, nonpeptidase-like protein
           [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 289

 Score = 37.2 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 3/106 (2%)

Query: 25  QTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF-LEAENPQKEISLYINSPG 83
           +  RG R   +  R  +E I F+   +  +++     Q+L  +    P   I L +++PG
Sbjct: 37  EQKRGSRVILLIHR--QESISFLGIPVSRYISIEDSEQVLRAIRLTPPNTPIDLILHTPG 94

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           G+V A   I   +      ++ F    A S G++L  A ++ +  A
Sbjct: 95  GLVLATEQIARALIRHPAKVTVFVPHYAMSGGTMLALAADEIVMDA 140


>gi|86606575|ref|YP_475338.1| S49 family peptidase [Synechococcus sp. JA-3-3Ab]
 gi|86555117|gb|ABD00075.1| peptidase S49 (protease IV) family, nonpeptidase-like protein
           [Synechococcus sp. JA-3-3Ab]
          Length = 285

 Score = 37.2 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 3/103 (2%)

Query: 28  RGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF-LEAENPQKEISLYINSPGGVV 86
           RG R   +  R  +E I F+   +  +++     Q+L  +    P   I L +++PGG+V
Sbjct: 40  RGSRVILLIHR--QESISFLGIPVSRYISIEDSEQVLRAIRLTPPNTPIDLILHTPGGLV 97

Query: 87  TAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
            A   I   +      ++ F    A S G++L  A ++ +  A
Sbjct: 98  LATEQIARALIRHPAKVTVFVPHYAMSGGTMLALAADEIVMDA 140


>gi|253796912|gb|ACT35711.1| capsid protein [Wolbachia phage WO]
          Length = 98

 Score = 37.2 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           +E   +++ ++     ++  +N G + E++ ++ +        +A + G+ D V
Sbjct: 10  LESLQKEVDRLYEMFVQLIARNRGLSIEKI-RSTEAGLYF-GEKAVEIGLADGV 61


>gi|14590206|ref|NP_142271.1| hypothetical protein PH0282 [Pyrococcus horikoshii OT3]
 gi|3256671|dbj|BAA29354.1| 280aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 280

 Score = 37.2 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
              K I L I++PGG+V A   I   ++             A S G+L+  A +K     
Sbjct: 87  PKDKPIDLIIHTPGGLVLAATQIAKALKDHPAETRVIVPHYAMSGGTLIALAADKI--IM 144

Query: 130 LPNARI 135
            P+A +
Sbjct: 145 DPHAVL 150


>gi|52843152|ref|YP_096951.1| hypothetical protein lpg2958 [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52630263|gb|AAU29004.1| transmembrane protein [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 501

 Score = 37.2 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 59/146 (40%), Gaps = 11/146 (7%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM---GQAASMGSLLLSAGEKGMRFALP 131
           I + I++PGG+  +   I         PI T+      +AAS G+ L       +    P
Sbjct: 122 IVILIDTPGGLYDSTRNIIQLFLLSDVPIVTYVSPTGARAASAGTYL--MYASTIAAMAP 179

Query: 132 NARILLHQP----SGGFSGQASDIERHAQDIVKIKRRLNEI--YVKNCGKTYEEVEKTLD 185
             ++    P    +G   G+  + ++   +       +  I    +  G+  +  EK + 
Sbjct: 180 GTQMGAASPVSLGTGFSEGEKDEKKKSTMENKVTHDAVATIRSLAQLRGRDPDFAEKAVT 239

Query: 186 RDHIMSASEACDWGVVDKVLMSRIDI 211
               ++A+EA   GVV+ +  +R D+
Sbjct: 240 EGKSITANEALSKGVVNYIAKNRDDL 265


>gi|219850369|ref|YP_002464802.1| hypothetical protein Cagg_3527 [Chloroflexus aggregans DSM 9485]
 gi|219544628|gb|ACL26366.1| protein of unknown function DUF114 [Chloroflexus aggregans DSM
           9485]
          Length = 275

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 61/163 (37%), Gaps = 23/163 (14%)

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           A L  ++  +    I L +++PGG+V A   I   ++     ++ F    A S G+L+  
Sbjct: 72  AVLRAIKMTDRDIPIDLILHTPGGLVLASEQIARALRRHPAKVTVFVPHYAMSGGTLIAL 131

Query: 121 AGEKGMR----FALPNARILLHQPSGGF-----SGQASDI--------ERHAQDIVKIKR 163
           A ++ +        P    L   P+            S+I        +   + I ++K 
Sbjct: 132 AADEIVMDENAVLGPVDPQLGQHPAASILRVLERKPISEIDDETLMMADIAEKAIRQVKH 191

Query: 164 RLNEIYVKN-CGKTYEEVEKTLDRDHI-----MSASEACDWGV 200
            + E+       +  EEV  TL          ++  EA + G+
Sbjct: 192 TVCELLSDKMSVEKAEEVAHTLASGVWTHDYPITVREARELGL 234


>gi|163739561|ref|ZP_02146971.1| phosphoglyceromutase [Phaeobacter gallaeciensis BS107]
 gi|161387314|gb|EDQ11673.1| phosphoglyceromutase [Phaeobacter gallaeciensis BS107]
          Length = 290

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 20/131 (15%)

Query: 87  TAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSG---- 142
           TA    YD   F + PI    +G  A  G++    G +  R A P A  L  +       
Sbjct: 134 TAIRDAYDADGFARTPILRGLVG--AITGTVAQCIGAQQSRDANPKAHQLFARFETLVNR 191

Query: 143 --GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE-VEKTLDRD-------HIMSA 192
                 Q SD   +A+++      LN I  +  G++  + + + + R+         MSA
Sbjct: 192 DFRARRQVSD---YARELAVSTTHLNRISHQATGQSASQLINERMLREARRLLIYTSMSA 248

Query: 193 SE-ACDWGVVD 202
           ++ A + G  D
Sbjct: 249 AQIAYELGYAD 259


>gi|284929652|ref|YP_003422174.1| signal peptide peptidase A [cyanobacterium UCYN-A]
 gi|284810096|gb|ADB95793.1| signal peptide peptidase A [cyanobacterium UCYN-A]
          Length = 272

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 56/156 (35%), Gaps = 29/156 (18%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCM--------GQAASMGSLLLS------AG 122
           L I+SPGG V     IY+ ++ ++                G   SMG+  +        G
Sbjct: 47  LRIDSPGGTVGDSQEIYEALKKLQKKTKIVATFGNISASGGVYISMGAPYIMANPGTITG 106

Query: 123 EKGMRFALPNARILLHQPSGGFS----GQASDIERHAQDIVKIKRRLNEIYVKNCGKT-Y 177
             G+     N + LL++    F     G   DI    + +   + ++ +  +    +   
Sbjct: 107 SIGVILRGNNFKELLNKIGVSFQVVKSGPYKDILSFDRQLSPEEEKILQEMIDISYQQFI 166

Query: 178 EEVEK----TLDRD------HIMSASEACDWGVVDK 203
             + K     +D+        I +  +A   G+VD+
Sbjct: 167 TTISKERNLDMDKTKSFADGRIFTGEQALKLGMVDR 202


>gi|261402510|ref|YP_003246734.1| protein of unknown function DUF114 [Methanocaldococcus vulcanius
           M7]
 gi|261369503|gb|ACX72252.1| protein of unknown function DUF114 [Methanocaldococcus vulcanius
           M7]
          Length = 282

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 28/65 (43%)

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           L  + +    K I L I++PGG+V A   I   ++             A S G+L+  A 
Sbjct: 80  LRAIRSAPKDKPIDLIIHTPGGLVLAATQIAKALKNHPSETRVIVPHYAMSGGTLIALAA 139

Query: 123 EKGMR 127
           +K + 
Sbjct: 140 DKIIM 144


>gi|163783733|ref|ZP_02178719.1| proteinase IV [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880979|gb|EDP74497.1| proteinase IV [Hydrogenivirga sp. 128-5-R1-1]
          Length = 264

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 53/139 (38%), Gaps = 14/139 (10%)

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLL 119
             ++  L  +   K + + ++SPGG V A   IY  ++  K       +    SMG++  
Sbjct: 31  VRKIERLRKDKSVKALVIRVDSPGGSVGASQEIYRAIERFKAEGKPVVV----SMGNVAA 86

Query: 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179
           S G      + P   IL +   G  +G    I +H      +++   +      GK  + 
Sbjct: 87  SGG---YYVSAPADYILANP--GTITGSIGVIIQHVAYRELMEKIGVKATAIKTGKFKDT 141

Query: 180 VEKTLDRDHIMSASEACDW 198
           +    +    ++  E  ++
Sbjct: 142 LNPFRE----LTPEE-KEY 155


>gi|159897941|ref|YP_001544188.1| AraC family transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159890980|gb|ABX04060.1| transcriptional regulator, AraC family [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 281

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 17/34 (50%)

Query: 147 QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           Q  DI  +A  +   K +L +I  ++ G+  + +
Sbjct: 191 QHHDIHYYADQLNLSKTQLAQIISQHSGQPPKRI 224


>gi|17988076|ref|NP_540710.1| putative protease IV [Brucella melitensis bv. 1 str. 16M]
 gi|17983826|gb|AAL52974.1| putative protease iv [Brucella melitensis bv. 1 str. 16M]
          Length = 301

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ--FIKPPISTFCMGQAASM 114
             +  +L  +  ++  K + L ++SPGG    G AIYD ++    K P+ T     AAS 
Sbjct: 38  EELLKRLDKIAGDDAVKGVILLLDSPGGTTVGGEAIYDAVRKIATKKPVVTQVGTLAASA 97

Query: 115 GSLLLSAGE 123
           G ++ SA +
Sbjct: 98  GYMIASASD 106


>gi|296108638|ref|YP_003620339.1| transmembrane protein [Legionella pneumophila 2300/99 Alcoy]
 gi|295650540|gb|ADG26387.1| transmembrane protein [Legionella pneumophila 2300/99 Alcoy]
          Length = 435

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 67/176 (38%), Gaps = 14/176 (7%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
           + + G I    A  +   +    +      I + I++PGG+  +   I         PI 
Sbjct: 29  LNIKGPIGPATADYLERGIK---SAQDADLIVILIDTPGGLYDSTRNIIQLFLLSDVPIV 85

Query: 105 TFCM---GQAASMGSLLLSAGEKGMRFALPNARILLHQP----SGGFSGQASDIERHAQD 157
           T+      +AAS G+ L       +    P  ++    P    +G   G+  + ++   +
Sbjct: 86  TYVSPTGARAASAGTYL--MYASTLAAMAPGTQMGAASPVSLGTGFSEGEKDEKKKSTME 143

Query: 158 IVKIKRRLNEI--YVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
                  +  I    +  G+  +  EK +     ++A+EA   GVV+ +  +R D+
Sbjct: 144 NKVTHDAVATIRSLAQLRGRDPDFAEKAVTEGKSITANEALSKGVVNYIAKNRDDL 199


>gi|239826366|ref|YP_002948990.1| ABC transporter [Geobacillus sp. WCH70]
 gi|239806659|gb|ACS23724.1| ABC transporter related [Geobacillus sp. WCH70]
          Length = 515

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 35/111 (31%), Gaps = 9/111 (8%)

Query: 99  IKPPISTF-CMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
               +ST         M   + +  +K  R    +    + Q     +G   D+E H  +
Sbjct: 223 HHGDVSTLSLEEMIQHMVGRVYTTVQKEARTYSDDILFKVEQLRIAKTGTTVDLEIHKGE 282

Query: 158 IVKI-------KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
           IV I       K  L E  + +  K   E      R    S  EA   G+ 
Sbjct: 283 IVGIAGLAGAGKTELAESLIAHT-KATGEWWIDGKRYTFSSPKEAIAAGIC 332


>gi|148361299|ref|YP_001252506.1| hypothetical protein LPC_3273 [Legionella pneumophila str. Corby]
 gi|148283072|gb|ABQ57160.1| hypothetical protein LPC_3273 [Legionella pneumophila str. Corby]
          Length = 501

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 67/176 (38%), Gaps = 14/176 (7%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
           + + G I    A  +   +    +      I + I++PGG+  +   I         PI 
Sbjct: 95  LNIKGPIGPATADYLERGIK---SAQDADLIVILIDTPGGLYDSTRNIIQLFLLSDVPIV 151

Query: 105 TFCM---GQAASMGSLLLSAGEKGMRFALPNARILLHQP----SGGFSGQASDIERHAQD 157
           T+      +AAS G+ L       +    P  ++    P    +G   G+  + ++   +
Sbjct: 152 TYVSPTGARAASAGTYL--MYASTLAAMAPGTQMGAASPVSLGTGFSEGEKDEKKKSTME 209

Query: 158 IVKIKRRLNEI--YVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
                  +  I    +  G+  +  EK +     ++A+EA   GVV+ +  +R D+
Sbjct: 210 NKVTHDAVATIRSLAQLRGRDPDFAEKAVTEGKSITANEALSKGVVNYIAKNRDDL 265


>gi|121535672|ref|ZP_01667477.1| signal peptide peptidase SppA, 36K type [Thermosinus
           carboxydivorans Nor1]
 gi|121305776|gb|EAX46713.1| signal peptide peptidase SppA, 36K type [Thermosinus
           carboxydivorans Nor1]
          Length = 308

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 58/183 (31%), Gaps = 40/183 (21%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP---ISTFCMGQAA 112
              I  QL     +   + + L INSPGG   A   + + ++ ++     + T     AA
Sbjct: 64  TDDIMRQLHEARDDAAVRAVVLRINSPGGSAPASQEVGEEVKKLRAAGKIVVTSMGDVAA 123

Query: 113 SMGSLLLSAGEK--------------------------------GMRFALPNARILLHQP 140
           S G  + +  +K                                    + P+  IL   P
Sbjct: 124 SGGYWIAALTDKIYANPATMTGSIGVYIPYANWEELYRKIGIRQEKIKSGPHKDIL--SP 181

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
               +G   +       +  +  +   +  +        V +  D   I + ++A + G+
Sbjct: 182 ERSMTG--EERAIIQAMVDDMYNQFVAVVAEGRKMDPARVRQLAD-GRIYTGNQAKELGL 238

Query: 201 VDK 203
           VD+
Sbjct: 239 VDE 241


>gi|56698262|ref|YP_168635.1| enoyl-CoA hydratase/isomerase family protein [Ruegeria pomeroyi
           DSS-3]
 gi|56679999|gb|AAV96665.1| enoyl-CoA hydratase/isomerase family protein [Ruegeria pomeroyi
           DSS-3]
          Length = 202

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 20/103 (19%)

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIK 162
           ++      A     + L+     +R A+P A++       GF  Q SD  R A  I   +
Sbjct: 88  VAALNGTLAGGANGMALAC---DLRIAVPEAKLFYPVMKLGFLPQPSDPVRMAALIGPAR 144

Query: 163 RRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            RL  +     G+               +A EA ++G+VD+++
Sbjct: 145 TRLI-LMA---GQKI-------------TAQEAYEFGLVDRIV 170


>gi|54298962|ref|YP_125331.1| hypothetical protein lpp3029 [Legionella pneumophila str. Paris]
 gi|53752747|emb|CAH14182.1| hypothetical protein lpp3029 [Legionella pneumophila str. Paris]
          Length = 501

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 67/176 (38%), Gaps = 14/176 (7%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
           + + G I    A  +   +    +      I + I++PGG+  +   I         PI 
Sbjct: 95  LNIKGPIGPATADYLERGIK---SAQDADLIVILIDTPGGLYDSTRNIIQLFLLSDVPIV 151

Query: 105 TFCM---GQAASMGSLLLSAGEKGMRFALPNARILLHQP----SGGFSGQASDIERHAQD 157
           T+      +AAS G+ L       +    P  ++    P    +G   G+  + ++   +
Sbjct: 152 TYVSPTGARAASAGTYL--MYASTLAAMAPGTQMGAASPVSLGTGFSEGEKDEKKKSTME 209

Query: 158 IVKIKRRLNEI--YVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211
                  +  I    +  G+  +  EK +     ++A+EA   GVV+ +  +R D+
Sbjct: 210 NKVTHDAVATIRSLAQLRGRDPDFAEKAVTEGKSITANEALSKGVVNYIAKNRDDL 265


>gi|315230668|ref|YP_004071104.1| hypothetical protein TERMP_00905 [Thermococcus barophilus MP]
 gi|315183696|gb|ADT83881.1| hypothetical protein TERMP_00905 [Thermococcus barophilus MP]
          Length = 279

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
              K I L I++PGG+V A   I   ++             A S G+L+  A +K     
Sbjct: 87  PKDKPIDLIIHTPGGLVLAATQIAKALKDHPAETRVIIPHYAMSGGTLIALAADKI--IM 144

Query: 130 LPNARI 135
            P+A +
Sbjct: 145 DPHAVL 150


>gi|260913982|ref|ZP_05920456.1| signal peptide peptidase SppA [Pasteurella dagmatis ATCC 43325]
 gi|260632069|gb|EEX50246.1| signal peptide peptidase SppA [Pasteurella dagmatis ATCC 43325]
          Length = 626

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 65/190 (34%), Gaps = 36/190 (18%)

Query: 48  TGQIEDHMATLICAQLLFLEAENPQ-KEISLYINSPGGVVTAGMAIY---DTMQFIKPPI 103
               ED +     A+LL    ++   K + L +NSPGG   A   I      +Q    P+
Sbjct: 341 GESFEDDVGGDTIARLLRQAKDDESVKAVVLRVNSPGGSAFASEIIRQEVTHLQKAGKPV 400

Query: 104 STFCMGQAASMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS-- 149
                G AAS G  + S             G  G+   LP+    + +      G ++  
Sbjct: 401 IVSMGGMAASGGYWISSTADYIVADKNTITGSIGIFAVLPSFEKTIKKAGVSADGVSTSP 460

Query: 150 ------------DIERHAQ-DIVKIKRRLNEIYVKNCGKTYEE--VEKTLDRDHIMSASE 194
                       ++    Q +I     +   +  +  G+  ++  VEK       +   E
Sbjct: 461 LSELSLFSPLSNELNDVFQLEIEHGYDKFISLVAE--GRALDKADVEKVAQGKIWL-GQE 517

Query: 195 ACDWGVVDKV 204
           A    +VD++
Sbjct: 518 ALKHNLVDQI 527


>gi|240169404|ref|ZP_04748063.1| enoyl-CoA hydratase [Mycobacterium kansasii ATCC 12478]
          Length = 231

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 19/109 (17%)

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           +     P+   C G A +MG+ LL++G+   R A     I  ++ + G +     I   A
Sbjct: 89  LLSYPKPVVMACTGHAIAMGAFLLTSGDH--RVAAHAYNIQANEVAIGMT-----IPYAA 141

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            +I+K++      Y +  G                    A   G +D++
Sbjct: 142 LEIMKLRLT-PSAYQQAAGLAK----------TFF-GETALAAGFIDEI 178


>gi|194859397|ref|XP_001969366.1| GG10066 [Drosophila erecta]
 gi|190661233|gb|EDV58425.1| GG10066 [Drosophila erecta]
          Length = 287

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 19/116 (16%)

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            +     P +    G + + G +L +A E   R  LPN  I +H     F          
Sbjct: 121 ALHLCGLPTAAAINGHSPAAGCVLATACE--YRVMLPNLFIGIHATRFSF---------- 168

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
                 I + +   Y          VE+ L++  + +  EA D G+VD++  S+ +
Sbjct: 169 -----VISKWMMNSY--QSVLPRRIVERALNQGKLFATQEALDVGLVDEIACSKEE 217


>gi|306844422|ref|ZP_07477012.1| signal peptide peptidase SppA, 36K type [Brucella sp. BO1]
 gi|306275235|gb|EFM56985.1| signal peptide peptidase SppA, 36K type [Brucella sp. BO1]
          Length = 327

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI--KPPISTFCMGQAASM 114
             +  +L  +  ++  K + L ++SPGG    G AIYD ++ I  K P+ T     AAS 
Sbjct: 64  EELLKRLDKIAGDDAVKGVILLLDSPGGTTVGGEAIYDAVRKIAKKKPVVTQVGTLAASA 123

Query: 115 GSLLLSAGE 123
           G ++ SA +
Sbjct: 124 GYMIASASD 132


>gi|306842559|ref|ZP_07475210.1| signal peptide peptidase SppA, 36K type [Brucella sp. BO2]
 gi|306287415|gb|EFM58895.1| signal peptide peptidase SppA, 36K type [Brucella sp. BO2]
          Length = 327

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI--KPPISTFCMGQAASM 114
             +  +L  +  ++  K + L ++SPGG    G AIYD ++ I  K P+ T     AAS 
Sbjct: 64  EELLKRLDRIAGDDAVKGVILLLDSPGGTTVGGEAIYDAVRKIAKKKPVVTQVGTLAASA 123

Query: 115 GSLLLSAGE 123
           G ++ SA +
Sbjct: 124 GYMIASASD 132


>gi|254700963|ref|ZP_05162791.1| signal peptide peptidase SppA [Brucella suis bv. 5 str. 513]
 gi|261751481|ref|ZP_05995190.1| signal peptide peptidase SppA [Brucella suis bv. 5 str. 513]
 gi|261741234|gb|EEY29160.1| signal peptide peptidase SppA [Brucella suis bv. 5 str. 513]
          Length = 327

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ--FIKPPISTFCMGQAASM 114
             +  +L  +  ++  K + L ++SPGG    G AIYD ++    K P+ T     AAS 
Sbjct: 64  EELLKRLDKIAGDDAVKGVILLLDSPGGTTVGGEAIYDAVRKIATKKPVVTQVGTLAASA 123

Query: 115 GSLLLSAGE 123
           G ++ SA +
Sbjct: 124 GYMIASASD 132


>gi|161618142|ref|YP_001592029.1| signal peptide peptidase SppA, 36K type [Brucella canis ATCC 23365]
 gi|254705333|ref|ZP_05167161.1| signal peptide peptidase SppA, 36K type [Brucella suis bv. 3 str.
           686]
 gi|261756044|ref|ZP_05999753.1| signal peptide peptidase SppA [Brucella suis bv. 3 str. 686]
 gi|161334953|gb|ABX61258.1| signal peptide peptidase SppA, 36K type [Brucella canis ATCC 23365]
 gi|261745797|gb|EEY33723.1| signal peptide peptidase SppA [Brucella suis bv. 3 str. 686]
          Length = 327

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ--FIKPPISTFCMGQAASM 114
             +  +L  +  ++  K + L ++SPGG    G AIYD ++    K P+ T     AAS 
Sbjct: 64  EELLKRLDKIAGDDAVKGVILLLDSPGGTTVGGEAIYDAVRKIATKKPVVTQVGTLAASA 123

Query: 115 GSLLLSAGE 123
           G ++ SA +
Sbjct: 124 GYMIASASD 132


>gi|260567208|ref|ZP_05837678.1| clp protease [Brucella suis bv. 4 str. 40]
 gi|260156726|gb|EEW91806.1| clp protease [Brucella suis bv. 4 str. 40]
          Length = 327

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ--FIKPPISTFCMGQAASM 114
             +  +L  +  ++  K + L ++SPGG    G AIYD ++    K P+ T     AAS 
Sbjct: 64  EELLKRLDKIAGDDAVKGVILLLDSPGGTTVGGEAIYDAVRKIATKKPVVTQVGTLAASA 123

Query: 115 GSLLLSAGE 123
           G ++ SA +
Sbjct: 124 GYMIASASD 132


>gi|163842424|ref|YP_001626828.1| signal peptide peptidase SppA, 36K type [Brucella suis ATCC 23445]
 gi|189023406|ref|YP_001934174.1| Clp protease [Brucella abortus S19]
 gi|254690458|ref|ZP_05153712.1| signal peptide peptidase SppA [Brucella abortus bv. 6 str. 870]
 gi|254694947|ref|ZP_05156775.1| signal peptide peptidase SppA [Brucella abortus bv. 3 str. Tulya]
 gi|254696578|ref|ZP_05158406.1| signal peptide peptidase SppA [Brucella abortus bv. 2 str. 86/8/59]
 gi|254707153|ref|ZP_05168981.1| signal peptide peptidase SppA [Brucella pinnipedialis M163/99/10]
 gi|254709303|ref|ZP_05171114.1| signal peptide peptidase SppA [Brucella pinnipedialis B2/94]
 gi|254713274|ref|ZP_05175085.1| signal peptide peptidase SppA [Brucella ceti M644/93/1]
 gi|254716373|ref|ZP_05178184.1| signal peptide peptidase SppA [Brucella ceti M13/05/1]
 gi|254731491|ref|ZP_05190069.1| signal peptide peptidase SppA [Brucella abortus bv. 4 str. 292]
 gi|256030826|ref|ZP_05444440.1| signal peptide peptidase SppA [Brucella pinnipedialis M292/94/1]
 gi|256060296|ref|ZP_05450469.1| signal peptide peptidase SppA [Brucella neotomae 5K33]
 gi|256258714|ref|ZP_05464250.1| signal peptide peptidase SppA [Brucella abortus bv. 9 str. C68]
 gi|260169730|ref|ZP_05756541.1| signal peptide peptidase SppA [Brucella sp. F5/99]
 gi|260546428|ref|ZP_05822168.1| clp protease [Brucella abortus NCTC 8038]
 gi|260756010|ref|ZP_05868358.1| signal peptide peptidase SppA [Brucella abortus bv. 6 str. 870]
 gi|260759234|ref|ZP_05871582.1| signal peptide peptidase SppA [Brucella abortus bv. 4 str. 292]
 gi|260760956|ref|ZP_05873299.1| signal peptide peptidase SppA [Brucella abortus bv. 2 str. 86/8/59]
 gi|260885030|ref|ZP_05896644.1| signal peptide peptidase SppA [Brucella abortus bv. 9 str. C68]
 gi|261215286|ref|ZP_05929567.1| signal peptide peptidase SppA [Brucella abortus bv. 3 str. Tulya]
 gi|261218155|ref|ZP_05932436.1| signal peptide peptidase SppA [Brucella ceti M13/05/1]
 gi|261314631|ref|ZP_05953828.1| signal peptide peptidase SppA [Brucella pinnipedialis M163/99/10]
 gi|261316812|ref|ZP_05956009.1| signal peptide peptidase SppA [Brucella pinnipedialis B2/94]
 gi|261320997|ref|ZP_05960194.1| signal peptide peptidase SppA [Brucella ceti M644/93/1]
 gi|261324268|ref|ZP_05963465.1| signal peptide peptidase SppA [Brucella neotomae 5K33]
 gi|261759268|ref|ZP_06002977.1| clp protease [Brucella sp. F5/99]
 gi|265987881|ref|ZP_06100438.1| signal peptide peptidase SppA [Brucella pinnipedialis M292/94/1]
 gi|163673147|gb|ABY37258.1| signal peptide peptidase SppA, 36K type [Brucella suis ATCC 23445]
 gi|189018978|gb|ACD71700.1| Clp protease [Brucella abortus S19]
 gi|260096535|gb|EEW80411.1| clp protease [Brucella abortus NCTC 8038]
 gi|260669552|gb|EEX56492.1| signal peptide peptidase SppA [Brucella abortus bv. 4 str. 292]
 gi|260671388|gb|EEX58209.1| signal peptide peptidase SppA [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676118|gb|EEX62939.1| signal peptide peptidase SppA [Brucella abortus bv. 6 str. 870]
 gi|260874558|gb|EEX81627.1| signal peptide peptidase SppA [Brucella abortus bv. 9 str. C68]
 gi|260916893|gb|EEX83754.1| signal peptide peptidase SppA [Brucella abortus bv. 3 str. Tulya]
 gi|260923244|gb|EEX89812.1| signal peptide peptidase SppA [Brucella ceti M13/05/1]
 gi|261293687|gb|EEX97183.1| signal peptide peptidase SppA [Brucella ceti M644/93/1]
 gi|261296035|gb|EEX99531.1| signal peptide peptidase SppA [Brucella pinnipedialis B2/94]
 gi|261300248|gb|EEY03745.1| signal peptide peptidase SppA [Brucella neotomae 5K33]
 gi|261303657|gb|EEY07154.1| signal peptide peptidase SppA [Brucella pinnipedialis M163/99/10]
 gi|261739252|gb|EEY27248.1| clp protease [Brucella sp. F5/99]
 gi|264660078|gb|EEZ30339.1| signal peptide peptidase SppA [Brucella pinnipedialis M292/94/1]
          Length = 327

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ--FIKPPISTFCMGQAASM 114
             +  +L  +  ++  K + L ++SPGG    G AIYD ++    K P+ T     AAS 
Sbjct: 64  EELLKRLDKIAGDDAVKGVILLLDSPGGTTVGGEAIYDAVRKIATKKPVVTQVGTLAASA 123

Query: 115 GSLLLSAGE 123
           G ++ SA +
Sbjct: 124 GYMIASASD 132


>gi|163741914|ref|ZP_02149303.1| transcriptional regulatory protein [Phaeobacter gallaeciensis 2.10]
 gi|161384635|gb|EDQ09015.1| transcriptional regulatory protein [Phaeobacter gallaeciensis 2.10]
          Length = 290

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 20/131 (15%)

Query: 87  TAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSG---- 142
           TA    YD   F + PI    +G  A  G++    G +  R A P A  L  +       
Sbjct: 134 TAIRDAYDADGFARTPILRGLVG--AITGTVAQCIGAQQSRDANPKAHQLFARFETLVNR 191

Query: 143 --GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE-VEKTLDRD-------HIMSA 192
                 Q SD   +A+++      LN I  +  G++  + + + + R+         MSA
Sbjct: 192 DFRARRQVSD---YARELAVSTTHLNRISHQATGQSASQLINERMLREARRLLIYTSMSA 248

Query: 193 SE-ACDWGVVD 202
           ++ A + G  D
Sbjct: 249 AQIAYELGYAD 259


>gi|256158851|ref|ZP_05456708.1| Clp protease [Brucella ceti M490/95/1]
 gi|256254232|ref|ZP_05459768.1| Clp protease [Brucella ceti B1/94]
 gi|261221381|ref|ZP_05935662.1| signal peptide peptidase SppA [Brucella ceti B1/94]
 gi|265997342|ref|ZP_06109899.1| signal peptide peptidase SppA [Brucella ceti M490/95/1]
 gi|260919965|gb|EEX86618.1| signal peptide peptidase SppA [Brucella ceti B1/94]
 gi|262551810|gb|EEZ07800.1| signal peptide peptidase SppA [Brucella ceti M490/95/1]
          Length = 327

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ--FIKPPISTFCMGQAASM 114
             +  +L  +  ++  K + L ++SPGG    G AIYD ++    K P+ T     AAS 
Sbjct: 64  EELLKRLDKIAGDDAVKGVILLLDSPGGTTVGGEAIYDAVRKIATKKPVVTQVGTLAASA 123

Query: 115 GSLLLSAGE 123
           G ++ SA +
Sbjct: 124 GYMIASASD 132


>gi|256112659|ref|ZP_05453580.1| signal peptide peptidase SppA, 36K type [Brucella melitensis bv. 3
           str. Ether]
 gi|265994099|ref|ZP_06106656.1| signal peptide peptidase SppA [Brucella melitensis bv. 3 str.
           Ether]
 gi|262765080|gb|EEZ11001.1| signal peptide peptidase SppA [Brucella melitensis bv. 3 str.
           Ether]
          Length = 327

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ--FIKPPISTFCMGQAASM 114
             +  +L  +  ++  K + L ++SPGG    G AIYD ++    K P+ T     AAS 
Sbjct: 64  EELLKRLDKIAGDDAVKGVILLLDSPGGTTVGGEAIYDAVRKIATKKPVVTQVGTLAASA 123

Query: 115 GSLLLSAGE 123
           G ++ SA +
Sbjct: 124 GYMIASASD 132


>gi|225851687|ref|YP_002731920.1| signal peptide peptidase SppA, 36K type [Brucella melitensis ATCC
           23457]
 gi|256045946|ref|ZP_05448818.1| signal peptide peptidase SppA, 36K type [Brucella melitensis bv. 1
           str. Rev.1]
 gi|256264800|ref|ZP_05467332.1| clp protease [Brucella melitensis bv. 2 str. 63/9]
 gi|260563227|ref|ZP_05833713.1| clp protease [Brucella melitensis bv. 1 str. 16M]
 gi|265992356|ref|ZP_06104913.1| signal peptide peptidase SppA [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|225640052|gb|ACN99965.1| signal peptide peptidase SppA, 36K type [Brucella melitensis ATCC
           23457]
 gi|260153243|gb|EEW88335.1| clp protease [Brucella melitensis bv. 1 str. 16M]
 gi|263003422|gb|EEZ15715.1| signal peptide peptidase SppA [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263095211|gb|EEZ18880.1| clp protease [Brucella melitensis bv. 2 str. 63/9]
 gi|326408176|gb|ADZ65241.1| signal peptide peptidase SppA, 36K type [Brucella melitensis M28]
          Length = 327

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ--FIKPPISTFCMGQAASM 114
             +  +L  +  ++  K + L ++SPGG    G AIYD ++    K P+ T     AAS 
Sbjct: 64  EELLKRLDKIAGDDAVKGVILLLDSPGGTTVGGEAIYDAVRKIATKKPVVTQVGTLAASA 123

Query: 115 GSLLLSAGE 123
           G ++ SA +
Sbjct: 124 GYMIASASD 132


>gi|194017284|ref|ZP_03055896.1| signal peptidase SppA [Bacillus pumilus ATCC 7061]
 gi|194011152|gb|EDW20722.1| signal peptidase SppA [Bacillus pumilus ATCC 7061]
          Length = 333

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 77/206 (37%), Gaps = 44/206 (21%)

Query: 47  VTGQIEDHMATLICAQLLFLEAENPQ---KEISLYINSPGGVVTAGMAIY---DTMQFIK 100
           + G+  DH A      L  LE        K + L +NSPGG V     I+   + ++  K
Sbjct: 78  LGGEGYDHRA-----FLKELEKAKDDASVKGVLLRVNSPGGGVYESAEIHKKLEEVKKAK 132

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALP----NARILLHQPSGGF------------ 144
            PI       AAS G  + +  +K   FA P     +  ++ Q                 
Sbjct: 133 KPIYVSMGSMAASGGYYVSTPAKKI--FASPETLTGSLGVIMQSLNYSKLADNLGIKYET 190

Query: 145 --SGQASDIERHAQDIVKIKRRLNEIYVKNC------------GKTYEEVEKTLDRDHIM 190
             SG+  DI    +D+ K +R + +  V N             G + ++V+K  D     
Sbjct: 191 IKSGKFKDIMSPNRDMTKDERDIMQSMVDNSYEGFVKVISEGRGMSKQDVKKIADGRVY- 249

Query: 191 SASEACDWGVVDKVLMSRIDIEEKSK 216
             ++A   G+VD++      I+   K
Sbjct: 250 DGTQAKSNGLVDELGYYEDAIKAMKK 275


>gi|6723199|dbj|BAA89608.1| capsid protein [Bacteriophage WO]
          Length = 123

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           +E   +++ ++     ++  +N G + E++ ++ +        +A + G+ D V
Sbjct: 2   LESLQKEVDRLYEMFVQLIARNRGLSIEKI-RSTEAGLYF-GEKAVEIGLADGV 53


>gi|86139851|ref|ZP_01058417.1| Peptidase U7 [Roseobacter sp. MED193]
 gi|85823480|gb|EAQ43689.1| Peptidase U7 [Roseobacter sp. MED193]
          Length = 472

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 66/212 (31%), Gaps = 54/212 (25%)

Query: 37  SRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96
           S +L  R  ++           I AQ+     +   + ++L I+S GG V     + D +
Sbjct: 88  SGVLIHRGGWIGQSSGQTSYEGIAAQIEAAARDASVRAVALEIDSFGGEVAGVFDLADQV 147

Query: 97  QFIKPP--ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
           + ++    +  F    A S G  L S  +   R  L         P  G  G    +  H
Sbjct: 148 RALRRDKPVWAFIAEHAFSAGYALASQAD---RILL---------PRTGTVGSIGVVVMH 195

Query: 155 AQDIVKIKRRLNEIYVKNCGKT----------YEEVEKTLDRD----HIMSAS------- 193
           A    ++ +    + + + G+            E V   + R+      + A        
Sbjct: 196 ADLSGQLDQDGVRVTMIHSGQHKVDGNPYEPLPESVRDDIQREIDVLRFLFAETVAAGRS 255

Query: 194 -------------------EACDWGVVDKVLM 206
                              +A   G+ D+V+ 
Sbjct: 256 GLLSQDAALATEATTYRGSDAVAAGLADEVVD 287


>gi|282897594|ref|ZP_06305594.1| Peptidase S49, protease IV [Raphidiopsis brookii D9]
 gi|281197517|gb|EFA72413.1| Peptidase S49, protease IV [Raphidiopsis brookii D9]
          Length = 607

 Score = 36.8 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 63/188 (33%), Gaps = 35/188 (18%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTF 106
           G+            L  +  +   K + L +NSPGG  TA   I   +Q  K   P+   
Sbjct: 331 GESSQIGGDRYARILRKIRQDQDIKSVVLRVNSPGGSATASEIIEREIQLTKQVKPVIVS 390

Query: 107 CMGQAASMGSLLLSAGEKGMRFALPNA---------RILLHQPSGGFSGQASDIERHAQ- 156
               AAS G  + S  +    FA P            +L  Q     +G   D  + ++ 
Sbjct: 391 MGDIAASGGYWIASNSDHI--FAEPGTLTGSIGVFGVLLNGQKLANNNGITWDTVKTSEF 448

Query: 157 -------------DIVKIKRRLNEIYVKNCGK-------TYEEVEKTLDRDHIMSASEAC 196
                        ++   +R +N IY     K          +V +        S + A 
Sbjct: 449 ADSQTVSRPKSPQELAIYQRSVNRIYNMFINKVVQGRKLPETKVGEIAQGRVW-SGATAK 507

Query: 197 DWGVVDKV 204
           + G+VD++
Sbjct: 508 EIGLVDEI 515


>gi|6723219|dbj|BAA89618.1| capsid protein [Bacteriophage WO]
          Length = 118

 Score = 36.8 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           +E   +++ ++     ++  +N G + E++ ++ +        +A + G+ D V
Sbjct: 2   LESLQKEVGRLYEMFLQLIARNRGLSIEKI-RSTEAGLYF-GEKAVEIGLADGV 53


>gi|18976612|ref|NP_577969.1| hypothetical protein PF0240 [Pyrococcus furiosus DSM 3638]
 gi|18892179|gb|AAL80364.1| hypothetical protein PF0240 [Pyrococcus furiosus DSM 3638]
          Length = 280

 Score = 36.8 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
              K I L I++PGG+V A   I   ++             A S G+L+  A +K     
Sbjct: 87  PKDKPIDLIIHTPGGLVLAATQIAKALKDHPAETRVIVPHYAMSGGTLIALAADKI--IM 144

Query: 130 LPNARI 135
            P+A +
Sbjct: 145 DPHAVL 150


>gi|253701657|ref|YP_003022846.1| hypothetical protein GM21_3060 [Geobacter sp. M21]
 gi|251776507|gb|ACT19088.1| protein of unknown function DUF107 [Geobacter sp. M21]
          Length = 430

 Score = 36.8 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 66/170 (38%), Gaps = 6/170 (3%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPI 103
           ++ V G I   + +    Q L    +   + + + +++PGG+ TA       +     P+
Sbjct: 28  VISVRGPINP-VTSGYLKQSLEAAGKRGDRLLLVELDTPGGLDTAMRDAVQAIFASPVPV 86

Query: 104 STFCMGQAASMGSLLLSAGEKGMRFAL-PNARILLHQPSGGFSGQASDIERHAQDIVKIK 162
           + +     A   S     G      A+ P   I    P G   G+  D +  A  IV   
Sbjct: 87  AVYVTPSGARAASAGAVIGLSADILAMAPGTNIGAAHPVGL-GGEKQD-KVMASKIVNDA 144

Query: 163 RRLNEIYVKNCGKTYEEVEKTLDRDHI-MSASEACDWGVVDKVLMSRIDI 211
               +   K  G+  E + + + RD I +++  A   GV+D V   R ++
Sbjct: 145 EAYVDGIAKKRGRNVE-LARRMVRDSISLTSEAALKQGVIDLVAADRQEL 193


>gi|157693342|ref|YP_001487804.1| peptidase [Bacillus pumilus SAFR-032]
 gi|157682100|gb|ABV63244.1| S49 family unassigned peptidase [Bacillus pumilus SAFR-032]
          Length = 333

 Score = 36.8 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 77/206 (37%), Gaps = 44/206 (21%)

Query: 47  VTGQIEDHMATLICAQLLFLEAENPQ---KEISLYINSPGGVVTAGMAIY---DTMQFIK 100
           + G+  DH A      L  LE        K + L +NSPGG V     I+   + ++  K
Sbjct: 78  LGGEGYDHRA-----FLKELEKAKDDASVKGVLLRVNSPGGGVYESAEIHKKLEEVKKAK 132

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALP----NARILLHQPSGGF------------ 144
            PI       AAS G  + +  +K   FA P     +  ++ Q                 
Sbjct: 133 KPIYVSMGSMAASGGYYVSTPAKKI--FASPETLTGSLGVIMQSLNYSKLADNLGIKYET 190

Query: 145 --SGQASDIERHAQDIVKIKRRLNEIYVKNC------------GKTYEEVEKTLDRDHIM 190
             SG+  DI    +D+ K +R + +  V N             G + ++V+K  D     
Sbjct: 191 IKSGKFKDIMSPNRDMTKDERDIMQSMVDNSYEGFVKVISEGRGMSKQDVKKIADGRVY- 249

Query: 191 SASEACDWGVVDKVLMSRIDIEEKSK 216
             ++A   G+VD++      I+   K
Sbjct: 250 DGTQAKSNGLVDELGYYEDAIKAMKK 275


>gi|55377494|ref|YP_135344.1| signal peptide peptidase SppA [Haloarcula marismortui ATCC 43049]
 gi|55230219|gb|AAV45638.1| putative signal peptide peptidase SppA [Haloarcula marismortui ATCC
           43049]
          Length = 331

 Score = 36.8 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 70/193 (36%), Gaps = 29/193 (15%)

Query: 47  VTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY------------- 93
           +T       A  I  Q+   +++   + + L +N+PGG +     I              
Sbjct: 85  ITSPPVGASADDIVEQIERADSDRGSEALLLKLNTPGGEIVPSEDIRIAAEQFDGPTIAY 144

Query: 94  --DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS-GQASD 150
             D        I+  C    A  GS++ S G  G R         +      F+ G+  D
Sbjct: 145 ATDVCASGGYDIAAGCDELWAREGSIVGSIGVVGSRVNAKELADRVGLSYEQFTAGEYKD 204

Query: 151 I-----ERHAQDIVKIKRRLNEIYVKNC-----GKTYE-EVEKTLDRDHIMSASEACDWG 199
                 E  A +   ++  +++ Y +       G+  + E  K  +    +   EA + G
Sbjct: 205 AGVPLKEMTADEREYLQSIVDDYYDQFIDTVAEGREMDAEALKDTEARIFL-GDEAEERG 263

Query: 200 VVDKVLMSRIDIE 212
           +VD+ L +R D+E
Sbjct: 264 LVDR-LGTRDDVE 275


>gi|289582290|ref|YP_003480756.1| peptidase S49 [Natrialba magadii ATCC 43099]
 gi|289531843|gb|ADD06194.1| peptidase S49 [Natrialba magadii ATCC 43099]
          Length = 328

 Score = 36.8 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 66/190 (34%), Gaps = 30/190 (15%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP-- 101
           ++ V   I +  A  I A L           + L ++SPGG VTA   +Y  +       
Sbjct: 50  VIEVDQSITEASAADITADLAEARENESIDAVVLDVDSPGGGVTASEQLYLAVDRTAAEM 109

Query: 102 PISTFCMGQAASMGSLLLSAGEKGMRFALPNARI------LLHQPSGGFSGQAS------ 149
           P+ T       S       +      +  P++ +        H  S    G+ +      
Sbjct: 110 PVVTSVQSMGTSGA--YYMSAPTDEMYVSPSSTVGSIGVRATHLDSPPMDGEVTTGPDKG 167

Query: 150 --DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMS------ASEACDWGVV 201
               ++      ++K+      +++ G   E      +R+  +S       +EA + G+ 
Sbjct: 168 SMTADQVKDQTEQMKQTFLGSVLEHRGDELE----LTERE--LSYAKVYIGTEAVENGLA 221

Query: 202 DKVLMSRIDI 211
           D++  + + I
Sbjct: 222 DEIGDTEVAI 231


>gi|260794328|ref|XP_002592161.1| hypothetical protein BRAFLDRAFT_88116 [Branchiostoma floridae]
 gi|229277376|gb|EEN48172.1| hypothetical protein BRAFLDRAFT_88116 [Branchiostoma floridae]
          Length = 6914

 Score = 36.8 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 5/80 (6%)

Query: 71   PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL 130
             + + +L INS  G + +   I+ TM      +     G +ASM S+ ++ G   +    
Sbjct: 3245 QEWKQTLEINS--GSLWSKDTIWSTMNVNGGDVHIDLSGGSASMDSISVTRGSLDITSTT 3302

Query: 131  PN---ARILLHQPSGGFSGQ 147
            P+     + +        GQ
Sbjct: 3303 PSSAVPTLTVQNSITVTYGQ 3322


>gi|46241429|gb|AAS82914.1| capsid protein [Wolbachia phage WO]
 gi|46241447|gb|AAS82923.1| capsid protein [Wolbachia phage WO]
          Length = 141

 Score = 36.8 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           +E   +++ ++     ++  +N G + E++ ++ +        +A + G+ D V
Sbjct: 10  LESLQKEVDRLYEMFVQLIARNRGLSIEKI-RSTEAGLYF-GEKAVEIGLADGV 61


>gi|116749550|ref|YP_846237.1| signal peptide peptidase SppA, 36K type [Syntrophobacter
           fumaroxidans MPOB]
 gi|116698614|gb|ABK17802.1| signal peptide peptidase A. Serine peptidase. MEROPS family S49
           [Syntrophobacter fumaroxidans MPOB]
          Length = 290

 Score = 36.8 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 61/182 (33%), Gaps = 31/182 (17%)

Query: 52  EDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI--KPPISTFCMG 109
               A+ +   +     +   + I + I+SPGG V     IY  ++      P+     G
Sbjct: 45  TISNASEVLKSIKEFRKDQSIRAILVRIDSPGGGVGPSQEIYRELKRTIKHKPVVASLGG 104

Query: 110 QAASMGSLLLS------------AGEKGMRFALPNARILL----HQPSGGFSGQASDI-- 151
            AAS G  + S             G  G+   LP  R L     ++     +G+  DI  
Sbjct: 105 IAASGGYYIASAANRIVASPGTITGSIGVIMYLPMLRDLFGKIGYEMVTIKAGRYKDIGN 164

Query: 152 ----------ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
                     E     + +  R+             E++ +  D   I+    A + G+V
Sbjct: 165 PGREMTPEEKEIMQASMDEAHRQFIRDVAAGRKMPEEKIREIAD-GRIILGQTAKELGLV 223

Query: 202 DK 203
           D+
Sbjct: 224 DE 225


>gi|320451100|ref|YP_004203196.1| periplasmic serine protease [Thermus scotoductus SA-01]
 gi|320151269|gb|ADW22647.1| periplasmic serine protease [Thermus scotoductus SA-01]
          Length = 277

 Score = 36.8 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 50/127 (39%), Gaps = 13/127 (10%)

Query: 14  VFLGLVPMVVEQTNRGERSYDIYS--RLLKERIVFVT--GQIEDHMATLICAQLLFLEAE 69
           +   L P + +Q   G R+  I    R  K R++ +    +    +   I   +   ++E
Sbjct: 13  ILSALTPYLQQQMLLGARARKIAELERKRKSRVITLIHRQEAVSFLGIPISRFINIDDSE 72

Query: 70  N---------PQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
                         I L +++PGG+V A   I + +      ++ F    A S G+L+  
Sbjct: 73  QVLRAIRLTDKNVPIDLILHTPGGLVLAAEQIAEALLRHPAKVTVFVPHYAMSGGTLIAL 132

Query: 121 AGEKGMR 127
           A ++ + 
Sbjct: 133 AADEIVM 139


>gi|260460501|ref|ZP_05808752.1| signal peptide peptidase SppA, 36K type [Mesorhizobium
           opportunistum WSM2075]
 gi|259033606|gb|EEW34866.1| signal peptide peptidase SppA, 36K type [Mesorhizobium
           opportunistum WSM2075]
          Length = 318

 Score = 36.8 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 58/178 (32%), Gaps = 31/178 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP--ISTFCMGQAASM 114
             +  +L  +   +  K + L I+SPGG    G +IY+ ++ +     +       AAS 
Sbjct: 66  DELIKRLETIRQSSKVKGVILAIDSPGGTTVGGESIYEEVRKLAADKPVVAEVGTLAASA 125

Query: 115 GSLLLS------------AGEKGMRFALPNARILLH----------------QPSGGFSG 146
           G ++ S             G  G+    P+   ++                  PS     
Sbjct: 126 GYMIASAADHIVARKTSIVGSIGVLIQYPDVSGMMDKLGVKLEEVKSSPLKASPSPFKPT 185

Query: 147 QASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
              +     + I+        I  +    ++E+     D   I +  +    G++D V
Sbjct: 186 NDDERAMVRKLILDSYDWFVGIVAERRKMSHEQALALAD-GSIFTGRQGVANGLIDAV 242


>gi|6723207|dbj|BAA89612.1| capsid protein [Bacteriophage WO]
          Length = 123

 Score = 36.8 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           +E   +++ ++     ++  +N G + E++ ++ +        +A + G+ D V
Sbjct: 2   LESLQKEVDRLYEMFVQLIARNRGLSIEKI-RSTEAGLYF-GEKAVEIGLADGV 53


>gi|169830543|ref|YP_001716525.1| hypothetical protein Daud_0335 [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637387|gb|ACA58893.1| protein of unknown function DUF114 [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 281

 Score = 36.8 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 42/105 (40%), Gaps = 5/105 (4%)

Query: 25  QTNRGERSYDIYSR--LLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSP 82
           +  RG R   +  R  L+    + +T  I    +  I   L  +    P   I L +++P
Sbjct: 39  ERKRGARLITLIHRQELISLFGIPLTRYINVEDSEQI---LRAIRLTPPHLPIDLVLHTP 95

Query: 83  GGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           GG+V A   I   +      ++      A S G+++  + ++ + 
Sbjct: 96  GGLVLASEQIARALLRHPAKVTVLVPHYAMSGGTMIALSADEIIM 140


>gi|23501065|ref|NP_697192.1| signal peptide peptidase SppA [Brucella suis 1330]
 gi|62289130|ref|YP_220923.1| signal peptide peptidase SppA [Brucella abortus bv. 1 str. 9-941]
 gi|82699069|ref|YP_413643.1| Clp protease [Brucella melitensis biovar Abortus 2308]
 gi|148560143|ref|YP_001258187.1| signal peptide peptidase SppA [Brucella ovis ATCC 25840]
 gi|225626693|ref|ZP_03784732.1| signal peptide peptidase SppA, 36K type [Brucella ceti str. Cudo]
 gi|237814624|ref|ZP_04593622.1| signal peptide peptidase SppA, 36K type [Brucella abortus str. 2308
           A]
 gi|256368618|ref|YP_003106124.1| signal peptide peptidase SppA [Brucella microti CCM 4915]
 gi|297247546|ref|ZP_06931264.1| protease IV [Brucella abortus bv. 5 str. B3196]
 gi|23346932|gb|AAN29107.1| signal peptide peptidase SppA [Brucella suis 1330]
 gi|62195262|gb|AAX73562.1| SppA, signal peptide peptidase SppA [Brucella abortus bv. 1 str.
           9-941]
 gi|82615170|emb|CAJ10109.1| Clp protease:Peptidase U7:Signal peptide peptidase, SppA 36 kDa
           type [Brucella melitensis biovar Abortus 2308]
 gi|148371400|gb|ABQ61379.1| signal peptide peptidase SppA [Brucella ovis ATCC 25840]
 gi|225618350|gb|EEH15393.1| signal peptide peptidase SppA, 36K type [Brucella ceti str. Cudo]
 gi|237789461|gb|EEP63671.1| signal peptide peptidase SppA, 36K type [Brucella abortus str. 2308
           A]
 gi|255998776|gb|ACU47175.1| signal peptide peptidase SppA [Brucella microti CCM 4915]
 gi|297174715|gb|EFH34062.1| protease IV [Brucella abortus bv. 5 str. B3196]
          Length = 331

 Score = 36.8 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ--FIKPPISTFCMGQAASM 114
             +  +L  +  ++  K + L ++SPGG    G AIYD ++    K P+ T     AAS 
Sbjct: 68  EELLKRLDKIAGDDAVKGVILLLDSPGGTTVGGEAIYDAVRKIATKKPVVTQVGTLAASA 127

Query: 115 GSLLLSAGE 123
           G ++ SA +
Sbjct: 128 GYMIASASD 136


>gi|312131830|ref|YP_003999170.1| signal peptide peptidase sppa, 67k type [Leadbetterella byssophila
           DSM 17132]
 gi|311908376|gb|ADQ18817.1| signal peptide peptidase SppA, 67K type [Leadbetterella byssophila
           DSM 17132]
          Length = 581

 Score = 36.8 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 59/190 (31%), Gaps = 32/190 (16%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP-- 101
           IV   G      A     ++     +   K I L INSPGG   A   ++  +Q  K   
Sbjct: 310 IVDGNGGEGFIAAEEFIKEIKRARKDKKVKAIVLRINSPGGSAMASDKMWREIQLTKKEK 369

Query: 102 PISTFCMGQAASMGSLLLSAGEKGM--------------------RFALPNARILLHQPS 141
           P+       AAS G  +    +  +                    +F      +   + S
Sbjct: 370 PVFASMGNVAASGGYYMAMGCDTIVAHPTTITGSIGIFGVMLNFQKFMNDKLGVTFDEVS 429

Query: 142 GGFSGQASDIERHAQDIVK--IKRRLNEIYVKNCGK-------TYEEVEKTLDRDHIMSA 192
                 +    +   ++ K  I+  +N+ Y     K          E++         + 
Sbjct: 430 THTYSNSPSSVKKMTEVEKQSIQNMINKGYESFTTKAAQGRKMDLNELKSLAGGRVW-TG 488

Query: 193 SEACDWGVVD 202
            +A + G+VD
Sbjct: 489 EQAKENGLVD 498


>gi|253796902|gb|ACT35706.1| capsid protein [Wolbachia phage WO]
 gi|253796904|gb|ACT35707.1| capsid protein [Wolbachia phage WO]
 gi|253796906|gb|ACT35708.1| capsid protein [Wolbachia phage WO]
          Length = 141

 Score = 36.8 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           +E   +++ ++     ++  +N G + E++ ++ +        +A + G+ D V
Sbjct: 10  LESLQKEVDRLYEMFVQLIARNRGLSIEKI-RSTEAGLYF-GEKAVEIGLADGV 61


>gi|118616505|ref|YP_904837.1| enoyl-CoA hydratase [Mycobacterium ulcerans Agy99]
 gi|118568615|gb|ABL03366.1| enoyl-CoA hydratase, EchA3 [Mycobacterium ulcerans Agy99]
          Length = 231

 Score = 36.8 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 40/109 (36%), Gaps = 19/109 (17%)

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           +     P+   C G A +MG+ LL +G+   R A     I  ++ + G +     I   A
Sbjct: 89  LLSYPKPVVIACTGHAIAMGAFLLCSGDH--RVAAHAYNIQANEVAIGMT-----IPYAA 141

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            +++K++      Y +  G                    A   G +D++
Sbjct: 142 MEVLKLRLT-PSAYQQAAGLAK----------TFF-GETALAAGFIDEI 178


>gi|326537889|gb|ADZ86104.1| signal peptide peptidase SppA, 36K type [Brucella melitensis M5-90]
          Length = 331

 Score = 36.8 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ--FIKPPISTFCMGQAASM 114
             +  +L  +  ++  K + L ++SPGG    G AIYD ++    K P+ T     AAS 
Sbjct: 68  EELLKRLDKIAGDDAVKGVILLLDSPGGTTVGGEAIYDAVRKIATKKPVVTQVGTLAASA 127

Query: 115 GSLLLSAGE 123
           G ++ SA +
Sbjct: 128 GYMIASASD 136


>gi|126465069|ref|YP_001040178.1| nodulation efficiency protein NfeD [Staphylothermus marinus F1]
 gi|126013892|gb|ABN69270.1| Nodulation efficiency protein NfeD [Staphylothermus marinus F1]
          Length = 443

 Score = 36.8 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 67/170 (39%), Gaps = 8/170 (4%)

Query: 44  IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPI 103
            V + G+I      L+   L   EAE     + + +++PGG++ +   +   ++    P+
Sbjct: 31  TVNINGEINYGTQYLLEEALS--EAEKLDAPLIMILDTPGGLLDSANNMIKLIRNSNVPV 88

Query: 104 STFCM---GQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
             +      QA S G+L+L      +    P   I   QP        +    +   I+ 
Sbjct: 89  IGYVYPAGAQAWSAGTLILL--ATHIAAMAPGTLIGAAQPVLYDPTTGTFKPINESKIIN 146

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
               +     ++ G+     E  + ++  ++A +A  + V+ +V+   +D
Sbjct: 147 PIVGIITTLAEDRGRNKTAAELFVRKNLYLTAEKALKYHVI-EVIALNMD 195


>gi|239636317|ref|ZP_04677319.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus warneri
           L37603]
 gi|239597672|gb|EEQ80167.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus warneri
           L37603]
          Length = 1057

 Score = 36.8 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 22/68 (32%)

Query: 170 VKNCGKTYEEVEKTLDRDHIM--------------SASE--------ACDWGVVDKVLMS 207
               G T EE+      D+                 A +        A D+G  DKV+  
Sbjct: 438 AIRRGTTLEEIHNMTKIDYFFLNKFQNIINIEHELKAHQGDLEYLKYAKDYGFSDKVIAH 497

Query: 208 RIDIEEKS 215
           R D+ E+ 
Sbjct: 498 RFDMTEED 505


>gi|269837468|ref|YP_003319696.1| hypothetical protein Sthe_1439 [Sphaerobacter thermophilus DSM
           20745]
 gi|269786731|gb|ACZ38874.1| protein of unknown function DUF114 [Sphaerobacter thermophilus DSM
           20745]
          Length = 288

 Score = 36.8 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 45/104 (43%), Gaps = 3/104 (2%)

Query: 25  QTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF-LEAENPQKEISLYINSPG 83
           +  RG R   I  R  +E +  +   I  ++      Q+L  +        + + +++PG
Sbjct: 38  ERMRGSRVITIIHR--QETMSLLGFPIARYIDIEDSEQVLRAIRLTPEDMPVDVVLHTPG 95

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           G+V A   I + ++  K  ++ F    A S G+L+    ++ + 
Sbjct: 96  GLVLAAEQIAEALRRHKGRVTVFVPHYAMSGGTLIALGADEIVM 139


>gi|157146039|ref|YP_001453358.1| protease 4 [Citrobacter koseri ATCC BAA-895]
 gi|157083244|gb|ABV12922.1| hypothetical protein CKO_01793 [Citrobacter koseri ATCC BAA-895]
          Length = 618

 Score = 36.8 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 56/177 (31%), Gaps = 31/177 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI---KPPISTFCMGQAA 112
                +Q+     +   K I L +NSPGG V+A   I   +        P+     G AA
Sbjct: 349 GDTTASQIRDARLDPKVKAIVLRVNSPGGSVSASEVIRAELAAAKAAGKPVVVSMGGMAA 408

Query: 113 SMGSLLLSA------------GEKGMRFALPNARILLHQPSGGFSGQAS----------- 149
           S G  + +             G  G+   +      L        G A+           
Sbjct: 409 SGGYWISTPASYIVANPSTLTGSIGIFGVINTVENSLDSIGVHTDGVATSPLADVSVTKS 468

Query: 150 ---DIERHAQD-IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
              ++++  Q  I    +R   +       T  +++K        +  +A   G+VD
Sbjct: 469 LPPEVQQMMQLSIENGYKRFITLVADARKSTPAQIDKIAQGHVW-TGQDAKANGLVD 524


>gi|240102505|ref|YP_002958814.1| hypothetical protein TGAM_0448 [Thermococcus gammatolerans EJ3]
 gi|239910059|gb|ACS32950.1| Conserved hypothetical protein [Thermococcus gammatolerans EJ3]
          Length = 280

 Score = 36.8 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           L  + A    K I L I++PGG+V A   I   ++             A S G+L+  A 
Sbjct: 80  LRAIRAAPKDKPIDLIIHTPGGLVLAATQIARALKEHPAETRVIVPHYAMSGGTLIALAA 139

Query: 123 EKGMRFALPNARI 135
           ++      PNA +
Sbjct: 140 DRI--IMDPNAVL 150


>gi|254171900|ref|ZP_04878576.1| periplasmic serine protease [Thermococcus sp. AM4]
 gi|214033796|gb|EEB74622.1| periplasmic serine protease [Thermococcus sp. AM4]
          Length = 280

 Score = 36.8 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           L  + A    K I L I++PGG+V A   I   ++             A S G+L+  A 
Sbjct: 80  LRAIRAAPKDKPIDLIIHTPGGLVLAATQIARALKEHPAETRVIVPHYAMSGGTLIALAA 139

Query: 123 EKGMRFALPNARI 135
           ++      PNA +
Sbjct: 140 DRI--IMDPNAVL 150


>gi|330685486|gb|EGG97139.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus
           epidermidis VCU121]
          Length = 1057

 Score = 36.8 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 22/68 (32%)

Query: 170 VKNCGKTYEEVEKTLDRDHIM--------------SASE--------ACDWGVVDKVLMS 207
               G T EE+      D+                 A +        A D+G  DKV+  
Sbjct: 438 AIRRGTTLEEIHNMTKIDYFFLNKFQNIINIEHELKAHQGDLEYLKYAKDYGFSDKVIAH 497

Query: 208 RIDIEEKS 215
           R D+ E+ 
Sbjct: 498 RFDMTEED 505


>gi|257388867|ref|YP_003178640.1| signal peptide peptidase SppA, 36K type [Halomicrobium mukohataei
           DSM 12286]
 gi|257171174|gb|ACV48933.1| signal peptide peptidase SppA, 36K type [Halomicrobium mukohataei
           DSM 12286]
          Length = 331

 Score = 36.8 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 66/188 (35%), Gaps = 33/188 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY---------------DTMQFIK 100
           A  I  Q+   + ++    + + +N+PGG +     I                D      
Sbjct: 94  AEDIVEQIERADDDSAVDALLVELNTPGGEIVPSEDIRLAAERFDGPTVGYATDVCASGG 153

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRF----ALPNARILLHQPSGGFSGQAS----DIE 152
             I+  C    A  GS++ S G  G R           +   Q + G    A     + E
Sbjct: 154 YDIAAGCDELWAREGSIVGSIGVIGSRVNAKELADRVGLSYEQFTAGTFKDAGTPLKEFE 213

Query: 153 RHAQD-----IVKIKRRLNEIYVKNCGKTYEEVE-KTLDRDHIMSASEACDWGVVDKVLM 206
           +  ++     +     +  +   +  G+  +  E +  +    +  SEA + G+VD++  
Sbjct: 214 QEEREYLQSIVDDYYEQFVDTVAE--GRELDAAEIRDTEARIFL-GSEAHELGLVDEIGT 270

Query: 207 SRIDIEEK 214
            R D+E K
Sbjct: 271 RR-DVEAK 277


>gi|183980983|ref|YP_001849274.1| enoyl-CoA hydratase, EchA3 [Mycobacterium marinum M]
 gi|183174309|gb|ACC39419.1| enoyl-CoA hydratase, EchA3 [Mycobacterium marinum M]
          Length = 231

 Score = 36.8 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 39/116 (33%), Gaps = 33/116 (28%)

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG-QASDIER- 153
           +     P+   C G A +MG+ LL +G+              H+ +      QA+++   
Sbjct: 89  LLSYPKPVVIACTGHAIAMGAFLLCSGD--------------HRVAAHAYNVQANEVAIG 134

Query: 154 -----HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
                 A +++K++      Y +  G                    A   G +D++
Sbjct: 135 MTIPYAAMEVLKLRLT-PSAYQQAAGLAK----------TFF-GETALAAGFIDEI 178


>gi|227512931|ref|ZP_03942980.1| acetyl-CoA carboxylase [Lactobacillus buchneri ATCC 11577]
 gi|227083931|gb|EEI19243.1| acetyl-CoA carboxylase [Lactobacillus buchneri ATCC 11577]
          Length = 258

 Score = 36.8 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 60/152 (39%), Gaps = 39/152 (25%)

Query: 64  LFLEAENPQKEISLYINSPGG--VVTA-----GMAIYDTMQ---FIKPPISTFCMGQAAS 113
           L  +AE   + I   +N+PG    V A     G AI   +Q    +K P  +  +G+  S
Sbjct: 94  LMKQAEKFHRPILALVNTPGAWPDVDAEYHGVGSAIAQCLQVGMQLKVPYISMIVGEGGS 153

Query: 114 MGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC 173
            G++ L+ G+K   F   ++   +  P G  S          +D  K+            
Sbjct: 154 GGAIALACGDKV--FMFEDSIYSVLSPEGYAS-------IMWKDSSKVA----------- 193

Query: 174 GKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            +  EE++        ++     + G++D+++
Sbjct: 194 -QAAEELK--------LTPDRLLESGIIDQII 216


>gi|6723193|dbj|BAA89605.1| capsid protein [Bacteriophage WO]
 gi|6723205|dbj|BAA89611.1| capsid protein [Bacteriophage WO]
          Length = 113

 Score = 36.8 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 7/49 (14%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           +++ ++     ++  +N G + E++ ++ +        +A + G+ D V
Sbjct: 7   KEVDRLYEMFVQLIARNRGLSIEKI-RSTEAGLYF-GEKAVEIGLADGV 53


>gi|229916502|ref|YP_002885148.1| NAD-dependent epimerase/dehydratase [Exiguobacterium sp. AT1b]
 gi|229467931|gb|ACQ69703.1| NAD-dependent epimerase/dehydratase [Exiguobacterium sp. AT1b]
          Length = 284

 Score = 36.8 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 14/55 (25%)

Query: 165 LNEIYVKNCGKTYEEVEK------TLDRDHIMSASEACDWGV--------VDKVL 205
           L E   ++ GK    ++         D D+ MS +EA   G         +D+V+
Sbjct: 224 LMERIGQHVGKPVHIIKDGDSSPYDSDVDYYMSIAEAKKAGFVFTQLDDWIDRVI 278


>gi|260892139|ref|YP_003238236.1| protein of unknown function DUF114 [Ammonifex degensii KC4]
 gi|260864280|gb|ACX51386.1| protein of unknown function DUF114 [Ammonifex degensii KC4]
          Length = 278

 Score = 36.8 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 47/105 (44%), Gaps = 5/105 (4%)

Query: 25  QTNRGERSYDIYSRLLKERIVFV-TGQIEDHMATLICAQLLF-LEAENPQKEISLYINSP 82
           +  RG R   + + + ++ ++ +    +  ++      Q+L  +    P   I + +++P
Sbjct: 39  ERRRGTR---LITMIHRQELISLLGLPLSRYINIEDSEQILRAIRYTPPDMPIDILLHTP 95

Query: 83  GGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           GG+V A   I   ++     ++ F    A S G+++  A ++ + 
Sbjct: 96  GGLVLAAEQIARALRKHPAKVTVFVPHYAMSGGTMIALAADEIVM 140


>gi|150021565|ref|YP_001306919.1| type III restriction enzyme, res subunit [Thermosipho melanesiensis
           BI429]
 gi|149794086|gb|ABR31534.1| type III restriction enzyme, res subunit [Thermosipho melanesiensis
           BI429]
          Length = 974

 Score = 36.8 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 8/44 (18%), Positives = 21/44 (47%), Gaps = 7/44 (15%)

Query: 156 QDIVKIKRRLNEIYVKN-------CGKTYEEVEKTLDRDHIMSA 192
           ++I ++K  + ++Y ++        GK  +E+E    ++H    
Sbjct: 770 EEINRVKETIEKVYSEHYEEKVSITGKDRDEIELDFIKEHYFIP 813


>gi|289192055|ref|YP_003457996.1| protein of unknown function DUF114 [Methanocaldococcus sp.
           FS406-22]
 gi|288938505|gb|ADC69260.1| protein of unknown function DUF114 [Methanocaldococcus sp.
           FS406-22]
          Length = 281

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 25/58 (43%)

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
              K I L I++PGG+V A   I   ++             A S G+L+  A +K + 
Sbjct: 87  PKDKPIDLIIHTPGGLVLAATQIAKALKAHPAETRVIVPHYAMSGGTLIALAADKIIM 144


>gi|254470192|ref|ZP_05083596.1| ATP-dependent Clp protease, proteolytic subunit ClpP
          [Pseudovibrio sp. JE062]
 gi|211960503|gb|EEA95699.1| ATP-dependent Clp protease, proteolytic subunit ClpP
          [Pseudovibrio sp. JE062]
          Length = 80

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 30 ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINS 81
          E+S  +   L   R V +TG +   MA  +C++LL L ++     I++ + S
Sbjct: 23 EKSIPVDKHLFDARTVLITGPVTQEMAQDVCSRLLAL-SQVSNDPITVIVLS 73


>gi|154246163|ref|YP_001417121.1| signal peptide peptidase SppA, 36K type [Xanthobacter autotrophicus
           Py2]
 gi|154160248|gb|ABS67464.1| signal peptide peptidase SppA, 36K type [Xanthobacter autotrophicus
           Py2]
          Length = 323

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 9/100 (9%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI--KPP 102
           V + G I +  A +   +LL     +  + + L I+SPGG VT    ++D ++ +  K P
Sbjct: 55  VTIGGIIRNDRARV---ELLEEIGRSRARAVILSIDSPGGTVTGSEQLFDALRRLSEKKP 111

Query: 103 ISTFCMGQAASMGSLLLSAGEKG---MRFALPNARILLHQ 139
           +     G AAS G+ + + G       R AL  +  +++Q
Sbjct: 112 VVAVVEGIAAS-GAYIAALGADHIVARRNALVGSVGVIYQ 150


>gi|124010064|ref|ZP_01694725.1| YqeZ [Microscilla marina ATCC 23134]
 gi|123983887|gb|EAY24287.1| YqeZ [Microscilla marina ATCC 23134]
          Length = 467

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 69/185 (37%), Gaps = 20/185 (10%)

Query: 27  NRGERSYDIYSRLLKERIVFVTGQIEDHMATLI---CAQLLFLEAENPQKEISLYINSPG 83
            + +   ++ +   K  ++ +  +I   ++  +     + L L+A+     I + +N+ G
Sbjct: 32  GQAQAQDNVETGKTKVFVIKIRQEINPQVSRYVDIALEEALNLKADY----IVVDMNTYG 87

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           G V     I   +   K P+  F    AAS G+L+  A +K   +  P A I       G
Sbjct: 88  GRVDDADYIRTKLLDFKKPVWVFVNKNAASAGALISIACDKI--YMQPGATIGAATVVTG 145

Query: 144 FSGQA------SDIERHAQDIVKIKR---RLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
             G+A      S +    +   K  +   R+ E  V       E + K  +     S  E
Sbjct: 146 DKGKAAPDKYQSYMRGMMRATAKTNKRDPRIAEAMVDQ-NIEIEGISKKGEVITF-STEE 203

Query: 195 ACDWG 199
           A   G
Sbjct: 204 AIKHG 208


>gi|46241439|gb|AAS82919.1| capsid protein [Wolbachia phage WO]
          Length = 141

 Score = 36.4 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           +E   +++ ++     ++  +N G + E++ ++ +        +A + G+ D V
Sbjct: 10  LESLQKEVDRLYEMFLQLIARNRGLSIEKI-RSTEAGLYF-GEKAVEIGLADGV 61


>gi|56460437|ref|YP_155718.1| periplasmic serine protease [Idiomarina loihiensis L2TR]
 gi|56179447|gb|AAV82169.1| Periplasmic serine protease, ClpP family [Idiomarina loihiensis
           L2TR]
          Length = 616

 Score = 36.4 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 61/167 (36%), Gaps = 33/167 (19%)

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTM---QFIKPPISTFCMGQAASMGSLLLSAGEK 124
                K I L I+SPGG   A   I   +   +    P+       AAS G  + +  +K
Sbjct: 358 NNKQTKAIVLRIDSPGGSAFASEIIRQEILQAKEAGIPVVASMSTVAASGGYWIAADADK 417

Query: 125 GMRFALPNAR---------ILLHQPSGGFSGQASDI----ERHA----QDIVKIKRRLNE 167
               A P            ++  + S    G  SD     E       +++ + +++L +
Sbjct: 418 I--VAAPTTITGSIGVFGLLMTLEDSLAAIGVHSDTVSTTEIQGLNPLEEMTEYQKKLVQ 475

Query: 168 IYVKNCGKTYEEV---EKTLDRD--------HIMSASEACDWGVVDK 203
             V+   + +  +    + + RD         I +  +A + G+VD+
Sbjct: 476 SSVEATYEDFLTIVSKARNMSRDDVHEVAQGRIWTGKQAMERGLVDQ 522


>gi|55981444|ref|YP_144741.1| hypothetical protein TTHA1475 [Thermus thermophilus HB8]
 gi|55772857|dbj|BAD71298.1| conserved hypothetical protein [Thermus thermophilus HB8]
          Length = 275

 Score = 36.4 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 36/83 (43%), Gaps = 3/83 (3%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
           + ++  I    +  +   L  +   +    I L +++PGG+V A   I + +      ++
Sbjct: 60  IPISRYINIDDSEQV---LRAIRLTDKNVPIDLILHTPGGLVLAAEQIAEALLRHPAKVT 116

Query: 105 TFCMGQAASMGSLLLSAGEKGMR 127
            F    A S G+L+  A ++ + 
Sbjct: 117 VFVPHYAMSGGTLIALAADEIVM 139


>gi|323139239|ref|ZP_08074294.1| hypothetical protein Met49242DRAFT_3682 [Methylocystis sp. ATCC
           49242]
 gi|322395537|gb|EFX98083.1| hypothetical protein Met49242DRAFT_3682 [Methylocystis sp. ATCC
           49242]
          Length = 273

 Score = 36.4 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 79/202 (39%), Gaps = 30/202 (14%)

Query: 25  QTNRGERSYDIYSRLLKERIVFVTGQIEDHMA-TLICAQLLFLEAENPQKEISLYINSPG 83
           +  RG R   +  R  +ER+  +   I  ++        L  ++  +P   + + +++PG
Sbjct: 37  ERARGSRVILLVHR--EERVSLLGLPIIRYLDMNDSEEVLRAIQLTDPNMALDIVLHTPG 94

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           G+  A   I   +   K  ++ F    A S G+L+  A ++ M    P++ +    P   
Sbjct: 95  GLYLAATQIARALGGHKGKVTVFVPHYAMSGGTLIALAADEIMMC--PHSVLGPLDPQVE 152

Query: 144 F-----------SGQASDI--------ERHAQDIVKIKRRLNEIYVKNCGKTYE-EVEKT 183
                           ++I        +   + + ++++ + ++   + G T   E+ KT
Sbjct: 153 GLPAVSLLRVLEQKPVAEIDDETLVLADIAQKALTQLEQTVAQLLKSSMGATAASELSKT 212

Query: 184 LDRDHI-----MSASEACDWGV 200
           L          ++A EA D G+
Sbjct: 213 LTSGRWTHDYAITAEEARDMGL 234


>gi|315638324|ref|ZP_07893504.1| signal peptide peptidase SppA [Campylobacter upsaliensis JV21]
 gi|315481591|gb|EFU72215.1| signal peptide peptidase SppA [Campylobacter upsaliensis JV21]
          Length = 293

 Score = 36.4 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 74/192 (38%), Gaps = 41/192 (21%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP--P 102
           + + G+I D  A  +  +++  + +   K +  +I+SPGG     M +   ++ +K   P
Sbjct: 49  IDLKGEILDTGA--VLEKIINAKNDPNIKGVLFFIDSPGGAFAPSMELALAIKDLKAQKP 106

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSG-QASDIERHA------ 155
           + ++  G  AS GS L +       +A P A I          G   S++ +        
Sbjct: 107 VISYAAGTMAS-GSYL-AGVAADKIYANPAAFIG--SIGVIAQGMNISELAQKIGIKEQT 162

Query: 156 ------------------QDIVKIKRRLNEIY-------VKNCGKTYEEVEKTLDRDHIM 190
                             ++   ++R +N  Y        K  G   +E EK  D    +
Sbjct: 163 IKAGTFKEAGTFTREWSEEERAYLQRLINNSYMLFVEFVAKERGLKVDEKEKWADARVFL 222

Query: 191 SASEACDWGVVD 202
            A+EA + G++D
Sbjct: 223 -ANEAKNLGLID 233


>gi|46199413|ref|YP_005080.1| periplasmic serine protease [Thermus thermophilus HB27]
 gi|46197038|gb|AAS81453.1| periplasmic serine protease [Thermus thermophilus HB27]
          Length = 275

 Score = 36.4 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 66/181 (36%), Gaps = 30/181 (16%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
           + ++  I    +  +   L  +   +    I L +++PGG+V A   I + +      ++
Sbjct: 60  IPISRYINIDDSEQV---LRAIRLTDKNVPIDLILHTPGGLVLAAEQIAEALLRHPAKVT 116

Query: 105 TFCMGQAASMGSLLLSAGEK----------------GMRFALPNARILLHQPSGGFSGQA 148
            F    A S G+L+  A ++                G   A    ++L  +P      Q 
Sbjct: 117 VFVPHYAMSGGTLIALAADEIVMDENAVLGPVDPQLGQYPAASIVKVLEKKPLSEIDDQT 176

Query: 149 ---SDIERHAQDIVKIKRRLNEIYVKNC-GKTYEEVEKTLDRDHI-----MSASEACDWG 199
              +D+   A  + ++K  +  +  K+   +  EEV   L +        +   +A   G
Sbjct: 177 LILADVAEKA--LRQVKTTVKNLLKKHMPEEKAEEVATLLSQGTWTHDYPIDVEQARSLG 234

Query: 200 V 200
           +
Sbjct: 235 L 235


>gi|221369919|ref|YP_002521015.1| Peptidase U7 [Rhodobacter sphaeroides KD131]
 gi|221162971|gb|ACM03942.1| Peptidase U7 [Rhodobacter sphaeroides KD131]
          Length = 477

 Score = 36.4 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 57/164 (34%), Gaps = 28/164 (17%)

Query: 46  FVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP--PI 103
           ++           I AQ+    ++   + ++L I+S GG V     + D ++ I+   P+
Sbjct: 97  WIGQSSGQTSYEGIAAQIKAAASDPAVRGLALEIDSFGGEVAGVFDLADRIRAIRGAKPV 156

Query: 104 STFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKR 163
             F    A S G  L S  +   R  L         P  G  G    +  HA    K+ +
Sbjct: 157 WAFVAEHALSAGYALASQAD---RILL---------PRTGALGSIGVVVLHADLSGKLDQ 204

Query: 164 RLNEIYVKNCGKT----------YEEVEKTLDRD----HIMSAS 193
               + + + G+            E V+  + R+      + A 
Sbjct: 205 DGVRVTLIHSGQHKVDGNPYQPLPEAVQGDIQREIDVLRFLFAE 248


>gi|260911480|ref|ZP_05918069.1| signal peptide peptidase SppA [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260634409|gb|EEX52510.1| signal peptide peptidase SppA [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 591

 Score = 36.4 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 74/207 (35%), Gaps = 36/207 (17%)

Query: 45  VFVTGQIEDH---MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ--FI 99
           +   G + +    ++  IC  L  L+ ++  K + L +NSPGG   A   I+  +     
Sbjct: 316 IAPGGMLNNSTNIVSKDICKNLEDLKNDDDIKAVVLRVNSPGGDAYASEQIWHQVTELRK 375

Query: 100 KPPISTFCMGQAASMGSLLLS------------AGEKGMRFALPNARILLHQPSGG---- 143
           K P+       AAS G  +               G  G+    P+   L+ +  G     
Sbjct: 376 KKPVVVSMGDYAASGGYYMSCGANWIVAEPNTLTGSIGIFGVFPDLSGLVTEKLGVKFDE 435

Query: 144 -------FSGQASDIERHAQDIVKIKRRLNEIYVKNCGK-------TYEEVEKTLDRDHI 189
                    G  +     A ++  ++  +N  Y     +       + + ++K       
Sbjct: 436 VKTNANSAFGNIAARPFSATEMAMLQGYVNRGYATFLNRVSQGRKMSVDNIDKIAQGRVW 495

Query: 190 MSASEACDWGVVDKVLMSRIDIEEKSK 216
           +  +EA    +VD++   +  +E+ ++
Sbjct: 496 L-GNEALKIKLVDQLGGIKEAVEKAAQ 521


>gi|218258067|ref|ZP_03474494.1| hypothetical protein PRABACTJOHN_00147 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225786|gb|EEC98436.1| hypothetical protein PRABACTJOHN_00147 [Parabacteroides johnsonii
           DSM 18315]
          Length = 633

 Score = 36.4 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 41/101 (40%), Gaps = 12/101 (11%)

Query: 120 SAGEKGMRFALPNARILL--HQPSGGFSGQASDIERHAQDIVKIKRR--LNEIY--VKNC 173
           + G +G R  + +  I++  HQP+G F G  + ++    +I   + +  ++         
Sbjct: 99  ALGAEGYRLQVKHGDIIITAHQPAGIFYGVQTLLQMLPPEIKSSREQKGIDWTIPCADIT 158

Query: 174 GKTYEEVEKTL---DRDHIMSASEACDWGVVDKVLMSRIDI 211
            K        +    R H  +  E   +  +D++   ++++
Sbjct: 159 DKPQFAWRGLMLDVSR-HWFTKEEVKKY--IDELAEYKMNV 196


>gi|212224654|ref|YP_002307890.1| hypothetical protein TON_1503 [Thermococcus onnurineus NA1]
 gi|212009611|gb|ACJ16993.1| Hypothetical protein TON_1503 [Thermococcus onnurineus NA1]
          Length = 280

 Score = 36.4 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
              K I L I++PGG+V A   I   ++             A S G+L+  A +K     
Sbjct: 88  PKDKPIDLIIHTPGGLVLAATQIARALKDHPAETRVIVPHYAMSGGTLIALAADKI--IM 145

Query: 130 LPNARI 135
            P+A +
Sbjct: 146 DPHAVL 151


>gi|148359293|ref|YP_001250500.1| signal peptide peptidase [Legionella pneumophila str. Corby]
 gi|296107340|ref|YP_003619040.1| signal peptide peptidase [Legionella pneumophila 2300/99 Alcoy]
 gi|148281066|gb|ABQ55154.1| signal peptide peptidase [Legionella pneumophila str. Corby]
 gi|295649241|gb|ADG25088.1| signal peptide peptidase [Legionella pneumophila 2300/99 Alcoy]
 gi|307610447|emb|CBX00018.1| hypothetical protein LPW_17741 [Legionella pneumophila 130b]
          Length = 318

 Score = 36.4 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 7/68 (10%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFI---KPPISTF--CMGQAASMGSLLLSAGEKGMR 127
           K + + INSPGG       IY+ +Q+    KP I T+  C+   AS    +    ++   
Sbjct: 103 KALIVRINSPGGSPVQAEYIYNVLQYYKSLKPNIKTYAVCVDMCASAAYYVAVGADEI-- 160

Query: 128 FALPNARI 135
           +A P + +
Sbjct: 161 YASPASMV 168


>gi|313672560|ref|YP_004050671.1| nodulation efficiency protein nfed [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312939316|gb|ADR18508.1| Nodulation efficiency protein NfeD [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 416

 Score = 36.4 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 54/155 (34%), Gaps = 11/155 (7%)

Query: 67  EAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM---GQAASMGSLLLSAGE 123
            A        + +++PGG++ +   I       K P+  +      +A S G+ +     
Sbjct: 45  NASRADSVFLVKLDTPGGILESTRKIVQLFLESKIPVVVYVSPQGARATSAGAFIAL--S 102

Query: 124 KGMRFALPNARILLHQPSGGFSGQA-SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
                      I    P          D+ +  +              +  GK  E++  
Sbjct: 103 SNYLLMSDGTHIGAAHPVNITGEDIKGDMRKKVE---NDTTAFIRSIAQKRGKN-EQIAT 158

Query: 183 TLDRDHI-MSASEACDWGVVDKVLMSRIDIEEKSK 216
            +  + I ++A EA D  +VD ++ +  ++ EK K
Sbjct: 159 EMVINSISLTAREAYDKRIVDDIVNTEEELIEKIK 193


>gi|268315964|ref|YP_003289683.1| hypothetical protein Rmar_0391 [Rhodothermus marinus DSM 4252]
 gi|262333498|gb|ACY47295.1| protein of unknown function DUF107 [Rhodothermus marinus DSM 4252]
          Length = 452

 Score = 36.4 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 49/138 (35%), Gaps = 19/138 (13%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
             I++ GG+V A   I   +     P   F    AAS G+L+  A ++      P A + 
Sbjct: 62  FRIDTFGGLVAAADQIRQLILDTPLPTVAFIDRNAASAGALIAYACDRI--VMAPGASMG 119

Query: 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH-------- 188
                 G +G+A+             R L     +  G+     E  +D D         
Sbjct: 120 AATVVEGTTGEAA-----PDKYQSYMRGLMRATAEANGRDPRIAEAMVDPDVAIEGLVPA 174

Query: 189 ----IMSASEACDWGVVD 202
                +SA EA + GV D
Sbjct: 175 GKVLTLSAREALELGVAD 192


>gi|54297662|ref|YP_124031.1| hypothetical protein lpp1713 [Legionella pneumophila str. Paris]
 gi|53751447|emb|CAH12865.1| hypothetical protein lpp1713 [Legionella pneumophila str. Paris]
          Length = 318

 Score = 36.4 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 7/68 (10%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFI---KPPISTF--CMGQAASMGSLLLSAGEKGMR 127
           K + + INSPGG       IY+ +Q+    KP I T+  C+   AS    +    ++   
Sbjct: 103 KALIVRINSPGGSPVQAEYIYNVLQYYKSLKPNIKTYAVCVDMCASAAYYVAVGADEI-- 160

Query: 128 FALPNARI 135
           +A P + +
Sbjct: 161 YASPASMV 168


>gi|54294636|ref|YP_127051.1| hypothetical protein lpl1713 [Legionella pneumophila str. Lens]
 gi|53754468|emb|CAH15952.1| hypothetical protein lpl1713 [Legionella pneumophila str. Lens]
          Length = 318

 Score = 36.4 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 7/68 (10%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFI---KPPISTF--CMGQAASMGSLLLSAGEKGMR 127
           K + + INSPGG       IY+ +Q+    KP I T+  C+   AS    +    ++   
Sbjct: 103 KALIVRINSPGGSPVQAEYIYNVLQYYKSLKPNIKTYAVCVDMCASAAYYVAVGADEI-- 160

Query: 128 FALPNARI 135
           +A P + +
Sbjct: 161 YASPASMV 168


>gi|296133645|ref|YP_003640892.1| protein of unknown function DUF114 [Thermincola sp. JR]
 gi|296032223|gb|ADG82991.1| protein of unknown function DUF114 [Thermincola potens JR]
          Length = 277

 Score = 36.4 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 3/83 (3%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
           +     I    +  +   L  +        ISL +++PGG+V A   I   ++  +  ++
Sbjct: 59  ILFGRFINIEDSEQV---LRAIRLTPQDMPISLVLHTPGGLVLASEQIAHALEKHRAKVT 115

Query: 105 TFCMGQAASMGSLLLSAGEKGMR 127
            +    A S G+L+  A ++ + 
Sbjct: 116 VYIPHYAMSGGTLIALAADEIVM 138


>gi|227509997|ref|ZP_03940046.1| acetyl-CoA carboxylase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227190603|gb|EEI70670.1| acetyl-CoA carboxylase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 258

 Score = 36.4 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 60/152 (39%), Gaps = 39/152 (25%)

Query: 64  LFLEAENPQKEISLYINSPGG--VVTA-----GMAIYDTMQ---FIKPPISTFCMGQAAS 113
           L  +AE   + I   +N+PG    V A     G AI   +Q    +K P  +  +G+  S
Sbjct: 94  LMKQAEKFHRPILALVNTPGAWPDVDAEYHGVGSAIAQCLQVGMQLKVPYISMIVGEGGS 153

Query: 114 MGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC 173
            G++ L+ G+K   F   ++   +  P G  S          +D  K+            
Sbjct: 154 GGAIALACGDKV--FMFEDSIYSVLSPEGYAS-------IMWKDSSKVA----------- 193

Query: 174 GKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            +  EE++        ++     + G++D+++
Sbjct: 194 -QAAEELK--------LTPDRLLESGIIDQII 216


>gi|227523059|ref|ZP_03953108.1| acetyl-CoA carboxylase [Lactobacillus hilgardii ATCC 8290]
 gi|227089877|gb|EEI25189.1| acetyl-CoA carboxylase [Lactobacillus hilgardii ATCC 8290]
          Length = 258

 Score = 36.4 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 60/152 (39%), Gaps = 39/152 (25%)

Query: 64  LFLEAENPQKEISLYINSPGG--VVTA-----GMAIYDTMQ---FIKPPISTFCMGQAAS 113
           L  +AE   + I   +N+PG    V A     G AI   +Q    +K P  +  +G+  S
Sbjct: 94  LMKQAEKFHRPILALVNTPGAWPDVDAEYHGVGSAIAQCLQVGMQLKVPYISMIVGEGGS 153

Query: 114 MGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC 173
            G++ L+ G+K   F   ++   +  P G  S          +D  K+            
Sbjct: 154 GGAIALACGDKV--FMFEDSIYSVLSPEGYAS-------IMWKDSSKVA----------- 193

Query: 174 GKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            +  EE++        ++     + G++D+++
Sbjct: 194 -QAAEELK--------LTPDRLLESGIIDQII 216


>gi|221632773|ref|YP_002521995.1| hypothetical protein trd_0764 [Thermomicrobium roseum DSM 5159]
 gi|221156384|gb|ACM05511.1| Protein of unknown function superfamily [Thermomicrobium roseum DSM
           5159]
          Length = 282

 Score = 36.4 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 66/181 (36%), Gaps = 29/181 (16%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
           + +   I+   A  +   L  +     +  I   +++PGG+V A   I   +   +  ++
Sbjct: 60  IPLARYIDIDDAEAV---LRAIRLTPDEMPIDFIVHTPGGLVLAAEQIASALVRHRGKVT 116

Query: 105 TFCMGQAASMGSLLLSAGEKGMR----FALPNARILLHQPSGGF-----SGQASDI---- 151
            F    A S G+L+  A ++ +        P    +   P+            ++I    
Sbjct: 117 VFVPHYAMSGGTLIALAADEIVMDENAVLGPVDPQIGQYPAASVLRVVREKPVAEIDDQT 176

Query: 152 ----ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD--------RDHIMSASEACDWG 199
               +   + + ++   +  I + N G++ EE ++  D         D+ +   EA   G
Sbjct: 177 LILADIGEKAMRQVNATVRHILMAN-GRSEEEAQRIADVLTCGQWTHDYPIDVEEARQLG 235

Query: 200 V 200
           +
Sbjct: 236 L 236


>gi|6723229|dbj|BAA89626.1| orf7 [Wolbachia phage WO]
          Length = 353

 Score = 36.4 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           +E   +++ ++     ++  +N G + E++ ++ +        +A + G+ D V
Sbjct: 197 LESLQKEVGRLYEMFLQLIARNRGLSIEKI-RSTEAGLYF-GEKAVEIGLADGV 248


>gi|308270374|emb|CBX26986.1| Putative protease slr0021 [uncultured Desulfobacterium sp.]
          Length = 297

 Score = 36.4 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 68/179 (37%), Gaps = 33/179 (18%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY-DTMQFIKPPISTFCMGQAASM 114
           +  I   +     ++  K I L I+SPGG V     I+ +T + I        MG AA+ 
Sbjct: 57  SKEIIRNIKKYREDDSIKAIILRIDSPGGAVGPSQEIFRETRKTIGIKKIIASMGTAAAS 116

Query: 115 GSLLLSAGEKGMRFALPNARIL-------------LHQPSGGFS-----GQASDIERHAQ 156
           G   ++AG  G+  A P                  + Q  G +S     G+  DI    +
Sbjct: 117 GGYYIAAGTNGIM-ANPGTITGSIGVIIGFTNFEEILQKIGLYSVVVKSGEYKDIGSPVR 175

Query: 157 DIVKIKRRLNEIYVKNC------------GKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            + + +++L + +V N                  +V+   D   I +   A + G+VD+
Sbjct: 176 KMTEKEKKLLQTFVDNTHMQFVDAVSKGRNMDIAKVKAIAD-GRIFTGEMAKNLGLVDR 233


>gi|218676281|ref|YP_002395100.1| enoyl-CoA hydratase [Vibrio splendidus LGP32]
 gi|218324549|emb|CAV26048.1| Enoyl-CoA hydratase/isomerase [Vibrio splendidus LGP32]
          Length = 270

 Score = 36.4 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 38/112 (33%), Gaps = 23/112 (20%)

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI--ERH 154
           + I  P+     G+    G  L S G+   R A P+A   + +      G   D+     
Sbjct: 102 REIPCPVIFAIHGRCWGGGLQLASGGD--FRIASPDANFSILEAK---WGLIPDMGGAIA 156

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
            +++++    L                       ++ +  A ++G+V K+  
Sbjct: 157 FRELMRKDHTLEMAMTAK----------------VLDSQTAKEYGLVTKIAE 192


>gi|220910121|ref|YP_002485432.1| hypothetical protein Cyan7425_4766 [Cyanothece sp. PCC 7425]
 gi|219866732|gb|ACL47071.1| protein of unknown function DUF114 [Cyanothece sp. PCC 7425]
          Length = 296

 Score = 36.4 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 4/108 (3%)

Query: 23  VEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLF-LEAENPQKEISLYINS 81
           +EQ  R  R   +  R  +E I  +   +  +++     Q+L  +    P   I L +++
Sbjct: 38  IEQ-QRRSRVIFLIHR--QESISLLGIPVSRYISIEDSEQVLRAIRLTPPDVPIDLILHT 94

Query: 82  PGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
           PGG+V A   I   +      ++      A S G++L  A ++ M  A
Sbjct: 95  PGGLVLATEQIARALIRHPAKVTVMVPHYAMSGGTMLALAADEIMMDA 142


>gi|52841976|ref|YP_095775.1| signal peptide peptidase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|52629087|gb|AAU27828.1| signal peptide peptidase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 318

 Score = 36.4 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 7/68 (10%)

Query: 73  KEISLYINSPGGVVTAGMAIYDTMQFI---KPPISTF--CMGQAASMGSLLLSAGEKGMR 127
           K + + INSPGG       IY+ +Q+    KP I T+  C+   AS    +    ++   
Sbjct: 103 KALIVRINSPGGSPVQAEYIYNVLQYYKSLKPNIKTYAVCVDMCASAAYYVAVGADEI-- 160

Query: 128 FALPNARI 135
           +A P + +
Sbjct: 161 YASPASMV 168


>gi|284053406|ref|ZP_06383616.1| hypothetical protein AplaP_18249 [Arthrospira platensis str.
           Paraca]
          Length = 21

 Score = 36.4 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 16/19 (84%)

Query: 190 MSASEACDWGVVDKVLMSR 208
           MSA+EA ++G++D+V+  R
Sbjct: 1   MSAAEAHEYGLIDQVIEER 19


>gi|163739864|ref|ZP_02147271.1| enoyl-CoA hydratase/isomerase family protein [Phaeobacter
           gallaeciensis BS107]
 gi|161386898|gb|EDQ11260.1| enoyl-CoA hydratase/isomerase family protein [Phaeobacter
           gallaeciensis BS107]
          Length = 205

 Score = 36.4 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 40/103 (38%), Gaps = 20/103 (19%)

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIK 162
           ++      A     + L+     +R A+P A++       G+  Q SD  R A  I   +
Sbjct: 89  VAALNGTLAGGANGMALAC---DLRIAVPTAKVFYPVMKLGYRPQPSDARRMAALIGPAR 145

Query: 163 RRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
            ++  I     G+               +A EA  +G++D+++
Sbjct: 146 TKM--ILAA--GQKI-------------TAEEAHIFGLIDRIV 171


>gi|46241445|gb|AAS82922.1| capsid protein [Wolbachia phage WO]
          Length = 141

 Score = 36.4 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           +E   +++ ++     ++  +N G + E++ ++ +        +A + G+ D V
Sbjct: 10  LESLQKEVDRLYEMFLQLIARNRGLSIEKI-RSTEAGLYF-GEKAVEIGLADGV 61


>gi|163745610|ref|ZP_02152970.1| 3-hydroxyacyl-CoA dehydrogenase, NAD-binding protein [Oceanibulbus
           indolifex HEL-45]
 gi|161382428|gb|EDQ06837.1| 3-hydroxyacyl-CoA dehydrogenase, NAD-binding protein [Oceanibulbus
           indolifex HEL-45]
          Length = 690

 Score = 36.4 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 40/127 (31%), Gaps = 29/127 (22%)

Query: 87  TAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE-----KGMRFALPNARILLHQPS 141
           T G A+ D ++ +  P      G A   G  L  A +      G  FA P  ++ LH   
Sbjct: 105 TQGHAVLDRLEKLSCPTICVVHGAALGAGFELALACDIRIAVPGASFAFPEVQLGLHPGL 164

Query: 142 GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201
           GG           A  ++     +  +       T                  A   G+V
Sbjct: 165 GGT------FRLPA--LIDSTEAMTMMLSGKTAHT----------------KRAKTLGIV 200

Query: 202 DKVLMSR 208
           D+++  R
Sbjct: 201 DEIVEER 207


>gi|89898686|ref|YP_515796.1| periplasmic serine proteases IV [Chlamydophila felis Fe/C-56]
 gi|89332058|dbj|BAE81651.1| periplasmic serine proteases IV [Chlamydophila felis Fe/C-56]
          Length = 338

 Score = 36.4 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 7/78 (8%)

Query: 54  HMATLICAQLLFLEAENPQ---KEISLYINSPGGVVTAGMAIYDTMQFIK----PPISTF 106
           H A ++   +  L++   +   K I + ++ PGG V      Y  +QF K     PI  F
Sbjct: 83  HTARILQDAITTLDSAPYKDRVKGIIIDMDCPGGEVFEIARTYSVIQFWKQRTNCPIYVF 142

Query: 107 CMGQAASMGSLLLSAGEK 124
             G  AS G  +  A +K
Sbjct: 143 VNGLCASGGYYVACAADK 160


>gi|11498462|ref|NP_069690.1| hypothetical protein AF0856 [Archaeoglobus fulgidus DSM 4304]
 gi|2649747|gb|AAB90383.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 291

 Score = 36.4 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 27/62 (43%)

Query: 63  LLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122
           L  + +    K I L I++PGG+V A   I   +       +      A S G+L+  A 
Sbjct: 88  LRAIRSTPKDKPIDLIIHTPGGLVLAATQIAKALHDHPAKTTVIVPHYAMSGGTLIALAA 147

Query: 123 EK 124
           ++
Sbjct: 148 DE 149


>gi|258514122|ref|YP_003190344.1| acetyl-CoA carboxylase, carboxyl transferase, alpha subunit
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257777827|gb|ACV61721.1| acetyl-CoA carboxylase, carboxyl transferase, alpha subunit
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 325

 Score = 36.4 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 53/149 (35%), Gaps = 39/149 (26%)

Query: 67  EAENPQKEISLYINSPGGVVTAG-------MAIYD---TMQFIKPPISTFCMGQAASMGS 116
           +AE   + +  +I++PG     G        AI      +  IK P+ +  +G+  S G+
Sbjct: 146 QAEKFGRPVICFIDTPGAYCGMGAEERGQSEAIASSLVLLSKIKVPVVSIVIGEGGSGGA 205

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176
           L L+AG++       +A   +  P               ++  + K              
Sbjct: 206 LALAAGDRI--LMQQHAVFSIISPESYA-------IILWKESSRAKDA------------ 244

Query: 177 YEEVEKTLDRDHIMSASEACDWGVVDKVL 205
             E+ K   RD         + G+ D+++
Sbjct: 245 -AEIMKITARDVY-------ELGIADEII 265


>gi|297564880|ref|YP_003683852.1| hypothetical protein Mesil_0404 [Meiothermus silvanus DSM 9946]
 gi|296849329|gb|ADH62344.1| protein of unknown function DUF114 [Meiothermus silvanus DSM 9946]
          Length = 280

 Score = 36.4 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 61/152 (40%), Gaps = 27/152 (17%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK--------- 124
            I L +++PGG+V A   I + +      ++ F    A S G+L+  A ++         
Sbjct: 86  PIDLVLHTPGGLVLAAEQIAEALIKHPAKVTVFVPHYAMSGGTLIALAADEIVMDENAVL 145

Query: 125 -------GMRFALPNARILLHQPSGGFSGQA---SDIERHAQDIVKIKRRLNEIYVKNCG 174
                  G   A    ++L H+P+     Q    +D+ R A  ++++   +  +  K+  
Sbjct: 146 GPVDPQLGQYPAASVIKVLEHKPASEIDDQTFILADVARKA--LIQVHTTVKNLLKKHLE 203

Query: 175 KTY-EEVEKTLDRDHI-----MSASEACDWGV 200
           +   EEV   L +        +S  EA   G+
Sbjct: 204 EARAEEVAGILSQGTWTHDYPISVEEARTLGL 235


>gi|16080005|ref|NP_390831.1| signal peptide peptidase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221310897|ref|ZP_03592744.1| signal peptide peptidase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221315223|ref|ZP_03597028.1| signal peptide peptidase [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221320141|ref|ZP_03601435.1| signal peptide peptidase [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221324422|ref|ZP_03605716.1| signal peptide peptidase [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|14548269|sp|O34525|SPPA_BACSU RecName: Full=Putative signal peptide peptidase sppA
 gi|2293234|gb|AAC00312.1| putative protease [Bacillus subtilis]
 gi|2635437|emb|CAB14931.1| signal peptide peptidase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 335

 Score = 36.4 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 59/178 (33%), Gaps = 40/178 (22%)

Query: 63  LLFLEAENPQKE---ISLYINSPGGVVTAGMAIYDTM----QFIKPPISTFCMGQAASMG 115
           L  LE     K    I L +NSPGG V     I+  +    +  K PI       AAS G
Sbjct: 90  LKNLERAKDDKTVKGIVLKVNSPGGGVYESAEIHKKLEEIKKETKKPIYVSMGSMAASGG 149

Query: 116 SLLLSAGEKGMRFALPNARILLH------------------QPSGGFSGQASDIERHAQD 157
             + +A +K   FA P                               SG   DI   +++
Sbjct: 150 YYISTAADKI--FATPETLTGSLGVIMESVNYSKLADKLGISFETIKSGAHKDIMSPSRE 207

Query: 158 IVKIKRRLNEIYVKNC------------GKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
           + K ++ + +  V N             G    EV+K  D        +A    +VD+
Sbjct: 208 MTKEEKNIMQSMVDNSYEGFVDVISKGRGMPKAEVKKIADGRVY-DGRQAKKLNLVDE 264


>gi|6723203|dbj|BAA89610.1| capsid protein [Bacteriophage WO]
          Length = 118

 Score = 36.4 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 7/54 (12%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           +E   +++ ++     ++  +N G + E++ ++ +        +A + G+ D +
Sbjct: 2   LESLQKEVDRLYEMFLQLIARNRGLSIEKI-RSTEAGLYF-GEKAVEIGLADGI 53


>gi|56964512|ref|YP_176243.1| signal peptidase SppA [Bacillus clausii KSM-K16]
 gi|56910755|dbj|BAD65282.1| signal peptidase SppA [Bacillus clausii KSM-K16]
          Length = 328

 Score = 36.4 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 57/168 (33%), Gaps = 33/168 (19%)

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTM----QFIKPPISTFCMGQAASMGSLLLSA-- 121
           +    + I + ++SPGG V     I+D +    +    P+       AAS G  L +   
Sbjct: 93  SSPNVEGIIIAVDSPGGGVLESAEIHDAVIEAQENYGKPVYISMGSMAASGGYYLAAPAE 152

Query: 122 ----------GEKGMRFALPNARILLHQP----SGGFSGQASDI------------ERHA 155
                     G  G+  +  N   LL +     +   SG   D+            E   
Sbjct: 153 QIFAYPQTLTGSIGVIMSSLNITELLDKIGVEETVYKSGPYKDMMSGTRPPTEEEDEILQ 212

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
             + +      E+     G   E V +  D   I +  +A + G++D+
Sbjct: 213 SIVDEYYDEFVEVIANGRGMDEERVRELGD-GRIYTGRQALEAGLIDE 259


>gi|163743391|ref|ZP_02150771.1| enoyl-CoA hydratase/isomerase family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161383385|gb|EDQ07774.1| enoyl-CoA hydratase/isomerase family protein [Phaeobacter
           gallaeciensis 2.10]
          Length = 205

 Score = 36.0 bits (82), Expect = 3.1,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 20/105 (19%)

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIK 162
           ++      A     + L+     +R A+P A+        G+  Q SD  R A  I   +
Sbjct: 89  VAALNGTLAGGANGIALAC---DLRIAVPTAKFFYPVMKLGYRPQPSDARRMAALIGPAR 145

Query: 163 RRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
            ++  I     G+               SA EA  +G++D+V+ S
Sbjct: 146 TKM--ILAA--GQKI-------------SADEAHIFGLIDRVVAS 173


>gi|6723217|dbj|BAA89617.1| capsid protein [Bacteriophage WO]
          Length = 121

 Score = 36.0 bits (82), Expect = 3.1,   Method: Composition-based stats.
 Identities = 7/49 (14%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           +++ ++     ++  +N G + E++ ++ +        +A + G+ D V
Sbjct: 7   KEVDRLYEMFVQLIARNRGLSIEKI-RSTEAGLYF-GEKAVEIGLADGV 53


>gi|313679166|ref|YP_004056905.1| hypothetical protein Ocepr_0270 [Oceanithermus profundus DSM 14977]
 gi|313151881|gb|ADR35732.1| hypothetical protein Ocepr_0270 [Oceanithermus profundus DSM 14977]
          Length = 281

 Score = 36.0 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 27/54 (50%)

Query: 74  EISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
            I L +++PGG+V A   I + ++     ++ F    A S G+L+    ++ + 
Sbjct: 89  PIDLILHTPGGLVLAAEQIAEALKRHPAKVTVFVPHYAMSGGTLIALGADEIVM 142


>gi|148258948|ref|YP_001243533.1| hypothetical protein BBta_7800 [Bradyrhizobium sp. BTAi1]
 gi|146411121|gb|ABQ39627.1| hypothetical protein BBta_7800 [Bradyrhizobium sp. BTAi1]
          Length = 276

 Score = 36.0 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 71/183 (38%), Gaps = 34/183 (18%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
             +   I+ + +  +   L  +   +    + + +++PGG+V A + I   ++  K  ++
Sbjct: 59  FPLMRYIDVNDSEDV---LRAIHMTDDDVPLDIVLHTPGGLVLAALQIARAIRAHKAKVT 115

Query: 105 TFCMGQAASMGSLLLSAGEKGMRF----------------ALPNARILLHQPSGGFSGQA 148
            F    A S G+L+  A ++ +                  A    +++  +P      Q 
Sbjct: 116 VFVPHYAMSGGTLIALAADEIVMCRHSVLGPIDPQLGQSPAASLLKVIEQKPIAEIDDQT 175

Query: 149 ---SDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR--------DHIMSASEACD 197
              +D+ R A  I ++K    E+         ++ E   ++        D+ +S +EA D
Sbjct: 176 LVLADVGRKA--IAQVKAAAKELLTDK--MPEDKAEALAEKLSTGQWTHDYPISPTEAKD 231

Query: 198 WGV 200
            G+
Sbjct: 232 LGL 234


>gi|329115488|ref|ZP_08244236.1| Peptidase [Acetobacter pomorum DM001]
 gi|326695198|gb|EGE46891.1| Peptidase [Acetobacter pomorum DM001]
          Length = 347

 Score = 36.0 bits (82), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 28/67 (41%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGS 116
           + + A L    +    K+I +  +SPGGV T    +   +     P++ F  G AAS   
Sbjct: 131 SSLSADLQAALSSADVKQILMVFDSPGGVTTGVSDMASQIAASSKPVTAFVPGMAASAAY 190

Query: 117 LLLSAGE 123
            L S   
Sbjct: 191 WLASQCS 197


>gi|298290593|ref|YP_003692532.1| enoyl-CoA hydratase/isomerase [Starkeya novella DSM 506]
 gi|296927104|gb|ADH87913.1| Enoyl-CoA hydratase/isomerase [Starkeya novella DSM 506]
          Length = 257

 Score = 36.0 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 57/186 (30%), Gaps = 54/186 (29%)

Query: 31  RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGM 90
           R+ DI+        + +TG      A     ++  L               PG  V   +
Sbjct: 38  RALDIFEADAGIGCIVLTGSDRAFAAGADIKEMQALTF-------------PGTYVDDFI 84

Query: 91  AIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEK-----GMRFALPNARILLHQPSGGFS 145
             ++ +   + P+     G A   G  +    +        RF  P  ++ +   +GG  
Sbjct: 85  TSWERLSRCRKPVVAAVAGYALGGGCEIAMMCDIILAADNARFGQPEIQLGIMPGAGGSQ 144

Query: 146 ------GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199
                 G+A  +E                     G+T             ++A EA  +G
Sbjct: 145 RLTRAVGKAKAMEMCL-----------------TGRT-------------LTAEEADRYG 174

Query: 200 VVDKVL 205
           +V +V+
Sbjct: 175 LVSRVV 180


>gi|316936719|gb|ADU60354.1| capsid protein [Wolbachia phage WO]
          Length = 132

 Score = 36.0 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 7/49 (14%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           +++ ++     ++  +N G + E++ ++ +        +A + G+ D V
Sbjct: 16  KEVDRLYEMFVQLIARNRGLSIEKI-RSTEAGLYF-GEKAVEIGLADGV 62


>gi|325104824|ref|YP_004274478.1| signal peptide peptidase SppA, 67K type [Pedobacter saltans DSM
           12145]
 gi|324973672|gb|ADY52656.1| signal peptide peptidase SppA, 67K type [Pedobacter saltans DSM
           12145]
          Length = 586

 Score = 36.0 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 71/186 (38%), Gaps = 30/186 (16%)

Query: 49  GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY--DTMQFIKPPISTF 106
           G      +  I   +     ++  K I L +NSPGG   A   I+    +   + P    
Sbjct: 320 GDQNTIGSEGISRAIRKARLDDKVKAIVLRVNSPGGSSLASDVIWRETVLAKKEKPFIVS 379

Query: 107 CMGQAASMGSLLLS------------AGEKGMRFALPNARILLHQPSGGF-----SGQAS 149
               AAS G  +               G  G+   LPN +  L+   G       +G+ +
Sbjct: 380 MGDYAASGGYYISCAADSIFAEPNTITGSIGVFAILPNLKPFLNNKLGITFDGVKTGEFA 439

Query: 150 DIERHAQDIVK-----IKRRLNEIYVKNCGKTYE--EVEKT----LDRDHIMSASEACDW 198
           D  +  + +       +++ +N+IY     +  E  ++ ++    + +  + +  +A D 
Sbjct: 440 DFGQVTRPLTSAEKELLQQEVNKIYFDFTKRVAEGRKISQSYVDSIGQGRVWTGKQAIDL 499

Query: 199 GVVDKV 204
           G+VDK+
Sbjct: 500 GLVDKI 505


>gi|260203367|ref|ZP_05770858.1| aldehyde dehydrogenase [Mycobacterium tuberculosis K85]
 gi|289572802|ref|ZP_06453029.1| aldehyde dehydrogenase [Mycobacterium tuberculosis K85]
 gi|289537233|gb|EFD41811.1| aldehyde dehydrogenase [Mycobacterium tuberculosis K85]
          Length = 385

 Score = 36.0 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 6/68 (8%)

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
            PS     +A+ I    + + + K    ++     G+    +E      H M +  A ++
Sbjct: 64  WPSTPPHERAAVIAAAVKMLAERKDLFTKLLAAETGQPPTIIETM----HWMGSMGAMNY 119

Query: 199 --GVVDKV 204
             G  DKV
Sbjct: 120 FAGAADKV 127


>gi|215406220|ref|ZP_03418401.1| aldehyde dehydrogenase [Mycobacterium tuberculosis 02_1987]
 gi|215448504|ref|ZP_03435256.1| aldehyde dehydrogenase [Mycobacterium tuberculosis T85]
 gi|289747992|ref|ZP_06507370.1| aldehyde dehydrogenase [Mycobacterium tuberculosis 02_1987]
 gi|289760327|ref|ZP_06519705.1| aldehyde dehydrogenase [Mycobacterium tuberculosis T85]
 gi|294994697|ref|ZP_06800388.1| aldehyde dehydrogenase [Mycobacterium tuberculosis 210]
 gi|289688520|gb|EFD56008.1| aldehyde dehydrogenase [Mycobacterium tuberculosis 02_1987]
 gi|289715891|gb|EFD79903.1| aldehyde dehydrogenase [Mycobacterium tuberculosis T85]
 gi|326905977|gb|EGE52910.1| aldehyde dehydrogenase [Mycobacterium tuberculosis W-148]
          Length = 487

 Score = 36.0 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 6/68 (8%)

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
            PS     +A+ I    + + + K    ++     G+    +E      H M +  A ++
Sbjct: 64  WPSTPPHERAAVIAAAVKMLAERKDLFTKLLAAETGQPPTIIETM----HWMGSMGAMNY 119

Query: 199 --GVVDKV 204
             G  DKV
Sbjct: 120 FAGAADKV 127


>gi|195577961|ref|XP_002078835.1| GD23639 [Drosophila simulans]
 gi|194190844|gb|EDX04420.1| GD23639 [Drosophila simulans]
          Length = 287

 Score = 36.0 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 19/116 (16%)

Query: 95  TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERH 154
            +     P +    G + + G +L +A E   R  LPN  I +H     F          
Sbjct: 121 ALHLCCLPTAAAINGHSPAAGCVLATACE--YRVMLPNLFIGIHATRFSF---------- 168

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
                 I + +   Y          VE+ L++  + +  EA + G+VD++  S+ +
Sbjct: 169 -----VISKWMMNSY--QSVLPRRVVERALNQGKLFATQEALNVGLVDEIACSKEE 217


>gi|161172332|pdb|3B4W|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Aldehyde
           Dehydrogenase Complexed With Nad+
          Length = 495

 Score = 36.0 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 6/68 (8%)

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
            PS     +A+ I    + + + K    ++     G+    +E      H M +  A ++
Sbjct: 64  WPSTPPHERAAVIAAAVKMLAERKDLFTKLLAAETGQPPTIIETM----HWMGSMGAMNY 119

Query: 199 --GVVDKV 204
             G  DKV
Sbjct: 120 FAGAADKV 127


>gi|31791400|ref|NP_853893.1| aldehyde dehydrogenase [Mycobacterium bovis AF2122/97]
 gi|31616985|emb|CAD93092.1| PROBABLE ALDEHYDE DEHYDROGENASE [Mycobacterium bovis AF2122/97]
          Length = 385

 Score = 36.0 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 6/68 (8%)

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
            PS     +A+ I    + + + K    ++     G+    +E      H M +  A ++
Sbjct: 64  WPSTPPHERAAVIAAAVKMLAERKDLFTKLLAAETGQPPTIIETM----HWMGSMGAMNY 119

Query: 199 --GVVDKV 204
             G  DKV
Sbjct: 120 FAGAADKV 127


>gi|15607364|ref|NP_214737.1| aldehyde dehydrogenase [Mycobacterium tuberculosis H37Rv]
 gi|15839603|ref|NP_334640.1| aldehyde dehydrogenase family protein [Mycobacterium tuberculosis
           CDC1551]
 gi|148659987|ref|YP_001281510.1| aldehyde dehydrogenase [Mycobacterium tuberculosis H37Ra]
 gi|148821416|ref|YP_001286170.1| aldehyde dehydrogenase [Mycobacterium tuberculosis F11]
 gi|167968779|ref|ZP_02551056.1| hypothetical aldehyde dehydrogenase [Mycobacterium tuberculosis
           H37Ra]
 gi|215414090|ref|ZP_03422747.1| aldehyde dehydrogenase [Mycobacterium tuberculosis 94_M4241A]
 gi|215433143|ref|ZP_03431062.1| aldehyde dehydrogenase [Mycobacterium tuberculosis EAS054]
 gi|219556019|ref|ZP_03535095.1| aldehyde dehydrogenase [Mycobacterium tuberculosis T17]
 gi|253797145|ref|YP_003030146.1| aldehyde dehydrogenase [Mycobacterium tuberculosis KZN 1435]
 gi|254233605|ref|ZP_04926931.1| hypothetical protein TBCG_00221 [Mycobacterium tuberculosis C]
 gi|254366672|ref|ZP_04982716.1| hypothetical aldehyde dehydrogenase [Mycobacterium tuberculosis
           str. Haarlem]
 gi|254549162|ref|ZP_05139609.1| aldehyde dehydrogenase [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260185087|ref|ZP_05762561.1| aldehyde dehydrogenase [Mycobacterium tuberculosis CPHL_A]
 gi|289445755|ref|ZP_06435499.1| aldehyde dehydrogenase [Mycobacterium tuberculosis CPHL_A]
 gi|289552475|ref|ZP_06441685.1| aldehyde dehydrogenase [Mycobacterium tuberculosis KZN 605]
 gi|289568126|ref|ZP_06448353.1| aldehyde dehydrogenase [Mycobacterium tuberculosis T17]
 gi|289756288|ref|ZP_06515666.1| aldehyde dehydrogenase [Mycobacterium tuberculosis EAS054]
 gi|297632703|ref|ZP_06950483.1| aldehyde dehydrogenase [Mycobacterium tuberculosis KZN 4207]
 gi|297729677|ref|ZP_06958795.1| aldehyde dehydrogenase [Mycobacterium tuberculosis KZN R506]
 gi|298527616|ref|ZP_07015025.1| aldehyde dehydrogenase [Mycobacterium tuberculosis 94_M4241A]
 gi|306774313|ref|ZP_07412650.1| aldehyde dehydrogenase [Mycobacterium tuberculosis SUMu001]
 gi|306779055|ref|ZP_07417392.1| aldehyde dehydrogenase [Mycobacterium tuberculosis SUMu002]
 gi|306782844|ref|ZP_07421166.1| aldehyde dehydrogenase [Mycobacterium tuberculosis SUMu003]
 gi|306787213|ref|ZP_07425535.1| aldehyde dehydrogenase [Mycobacterium tuberculosis SUMu004]
 gi|306791768|ref|ZP_07430070.1| aldehyde dehydrogenase [Mycobacterium tuberculosis SUMu005]
 gi|306795810|ref|ZP_07434112.1| aldehyde dehydrogenase [Mycobacterium tuberculosis SUMu006]
 gi|306801808|ref|ZP_07438476.1| aldehyde dehydrogenase [Mycobacterium tuberculosis SUMu008]
 gi|306806020|ref|ZP_07442688.1| aldehyde dehydrogenase [Mycobacterium tuberculosis SUMu007]
 gi|306970415|ref|ZP_07483076.1| aldehyde dehydrogenase [Mycobacterium tuberculosis SUMu009]
 gi|306974646|ref|ZP_07487307.1| aldehyde dehydrogenase [Mycobacterium tuberculosis SUMu010]
 gi|307082355|ref|ZP_07491525.1| aldehyde dehydrogenase [Mycobacterium tuberculosis SUMu011]
 gi|307082699|ref|ZP_07491812.1| aldehyde dehydrogenase [Mycobacterium tuberculosis SUMu012]
 gi|313657003|ref|ZP_07813883.1| aldehyde dehydrogenase [Mycobacterium tuberculosis KZN V2475]
 gi|1871596|emb|CAB06990.1| PROBABLE ALDEHYDE DEHYDROGENASE [Mycobacterium tuberculosis H37Rv]
 gi|13879719|gb|AAK44454.1| aldehyde dehydrogenase family protein [Mycobacterium tuberculosis
           CDC1551]
 gi|124603398|gb|EAY61673.1| hypothetical protein TBCG_00221 [Mycobacterium tuberculosis C]
 gi|134152184|gb|EBA44229.1| hypothetical aldehyde dehydrogenase [Mycobacterium tuberculosis
           str. Haarlem]
 gi|148504139|gb|ABQ71948.1| aldehyde dehydrogenase [Mycobacterium tuberculosis H37Ra]
 gi|148719943|gb|ABR04568.1| hypothetical aldehyde dehydrogenase [Mycobacterium tuberculosis
           F11]
 gi|253318648|gb|ACT23251.1| aldehyde dehydrogenase [Mycobacterium tuberculosis KZN 1435]
 gi|289418713|gb|EFD15914.1| aldehyde dehydrogenase [Mycobacterium tuberculosis CPHL_A]
 gi|289437107|gb|EFD19600.1| aldehyde dehydrogenase [Mycobacterium tuberculosis KZN 605]
 gi|289541879|gb|EFD45528.1| aldehyde dehydrogenase [Mycobacterium tuberculosis T17]
 gi|289696875|gb|EFD64304.1| aldehyde dehydrogenase [Mycobacterium tuberculosis EAS054]
 gi|298497410|gb|EFI32704.1| aldehyde dehydrogenase [Mycobacterium tuberculosis 94_M4241A]
 gi|308217146|gb|EFO76545.1| aldehyde dehydrogenase [Mycobacterium tuberculosis SUMu001]
 gi|308327983|gb|EFP16834.1| aldehyde dehydrogenase [Mycobacterium tuberculosis SUMu002]
 gi|308332364|gb|EFP21215.1| aldehyde dehydrogenase [Mycobacterium tuberculosis SUMu003]
 gi|308336116|gb|EFP24967.1| aldehyde dehydrogenase [Mycobacterium tuberculosis SUMu004]
 gi|308339747|gb|EFP28598.1| aldehyde dehydrogenase [Mycobacterium tuberculosis SUMu005]
 gi|308343752|gb|EFP32603.1| aldehyde dehydrogenase [Mycobacterium tuberculosis SUMu006]
 gi|308347473|gb|EFP36324.1| aldehyde dehydrogenase [Mycobacterium tuberculosis SUMu007]
 gi|308351371|gb|EFP40222.1| aldehyde dehydrogenase [Mycobacterium tuberculosis SUMu008]
 gi|308352099|gb|EFP40950.1| aldehyde dehydrogenase [Mycobacterium tuberculosis SUMu009]
 gi|308356049|gb|EFP44900.1| aldehyde dehydrogenase [Mycobacterium tuberculosis SUMu010]
 gi|308360004|gb|EFP48855.1| aldehyde dehydrogenase [Mycobacterium tuberculosis SUMu011]
 gi|308367569|gb|EFP56420.1| aldehyde dehydrogenase [Mycobacterium tuberculosis SUMu012]
 gi|323717212|gb|EGB26421.1| aldehyde dehydrogenase [Mycobacterium tuberculosis CDC1551A]
 gi|328456932|gb|AEB02355.1| aldehyde dehydrogenase [Mycobacterium tuberculosis KZN 4207]
          Length = 487

 Score = 36.0 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 6/68 (8%)

Query: 139 QPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
            PS     +A+ I    + + + K    ++     G+    +E      H M +  A ++
Sbjct: 64  WPSTPPHERAAVIAAAVKMLAERKDLFTKLLAAETGQPPTIIETM----HWMGSMGAMNY 119

Query: 199 --GVVDKV 204
             G  DKV
Sbjct: 120 FAGAADKV 127


>gi|238926431|ref|ZP_04658191.1| lactaldehyde dehydrogenase [Selenomonas flueggei ATCC 43531]
 gi|238885625|gb|EEQ49263.1| lactaldehyde dehydrogenase [Selenomonas flueggei ATCC 43531]
          Length = 475

 Score = 36.0 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 3/84 (3%)

Query: 116 SLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK 175
           + + +AGEK +R A+  A    H        +   I R A  + + +    E      GK
Sbjct: 31  AEICTAGEKEVRAAVDAAERAFHTVELSPYERYEIIMRAANLMRERREEFAEALSAEAGK 90

Query: 176 TYEEVEKTLDRDH---IMSASEAC 196
              +    +DR +   I+SA EA 
Sbjct: 91  PIRDARGEIDRSYQTLILSAEEAK 114


>gi|90418241|ref|ZP_01226153.1| conserved hypothetical protein [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337913|gb|EAS51564.1| conserved hypothetical protein [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 313

 Score = 36.0 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 4/110 (3%)

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
           +LY++SPGG V   + +   ++  +        G  AS   LLL+ G    R A   A +
Sbjct: 146 TLYLHSPGGAVDDAILMARELRERRLSAMVPADGYCASACPLLLAGGLT--RNAGEGAWV 203

Query: 136 LLHQPSGGFSGQAS-DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
            +HQ         S D++R    + +   R  E+ V   G       K +
Sbjct: 204 GVHQVYALPLSDVSRDVDRSIAGVQETIARCQELLVA-MGVDPAVWIKAM 252


>gi|71006056|ref|XP_757694.1| hypothetical protein UM01547.1 [Ustilago maydis 521]
 gi|46097369|gb|EAK82602.1| hypothetical protein UM01547.1 [Ustilago maydis 521]
          Length = 1128

 Score = 36.0 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%)

Query: 190 MSASEACDWGVVDKVLMS-RIDIEE 213
           MS+ EA  +G+VD V+ + R+D +E
Sbjct: 568 MSSHEAKKFGLVDHVMDNERMDAQE 592


>gi|84684450|ref|ZP_01012351.1| hypothetical protein 1099457000260_RB2654_12534 [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84667429|gb|EAQ13898.1| hypothetical protein RB2654_12534 [Rhodobacterales bacterium
           HTCC2654]
          Length = 253

 Score = 36.0 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 72/207 (34%), Gaps = 38/207 (18%)

Query: 4   EGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQL 63
              +    E    G +P  +E +  G               + +TGQI       I    
Sbjct: 66  RAPSTLPGERPVTGPMPERLEVSADGP-------------TLTLTGQIAPGDGARI-GDE 111

Query: 64  LFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123
           L   A   Q   ++ ++SPGG V+  + I + ++               S    +L+ G 
Sbjct: 112 LRTRAGAGQTVATIRLDSPGGSVSDALEIGELIRGSGIDTEIAANAICLSACPYILAGGV 171

Query: 124 KGMRFALPNARILLHQPSGGFSGQAS---------DIERHAQDIVKIKRRL---NEIYVK 171
           +  R    + R+ +HQ    + G+++         DI+R   +++    R+     I   
Sbjct: 172 E--RTVASSGRVGVHQ---HYFGESTILPAFIAVEDIQRGQAEVMAYLTRMGIGLGIMEH 226

Query: 172 NCGKTYEEVEKTLDRDHIMSASEACDW 198
                 +++       +++S  E  ++
Sbjct: 227 AMRTPPDQI-------YLLSQEELSEY 246


>gi|85374255|ref|YP_458317.1| hypothetical protein ELI_07140 [Erythrobacter litoralis HTCC2594]
 gi|84787338|gb|ABC63520.1| hypothetical protein ELI_07140 [Erythrobacter litoralis HTCC2594]
          Length = 187

 Score = 36.0 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 57/157 (36%), Gaps = 18/157 (11%)

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYD---TMQFIKPPISTFCMGQAASMGSLLLSA 121
            L A   +  + L + + GG      A+ D    ++     I         S G+  +++
Sbjct: 33  QLGAAPTEGPLVLALTTLGGDPEVARAMGDDIRLLRDAGRDICFLGKAAVYSAGATFMAS 92

Query: 122 GEKGMRFALPNARILLHQ-------------PSGGFSGQASDIERHAQDIVKIKRRLNEI 168
                R+     R+++H+              S     +A+  E   +  + I+    + 
Sbjct: 93  FPVDKRYLTSGTRLMVHERQIAKTINLSGPLKSCIAQLKATLHEI--EHSIAIEEEGFQS 150

Query: 169 YVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           +V+     +E + +    +  + A EA D G++  ++
Sbjct: 151 FVEGSSVDFETLREKAPDNWYIPAEEALDKGLIAGII 187


>gi|197121609|ref|YP_002133560.1| signal peptide peptidase SppA, 36K type [Anaeromyxobacter sp. K]
 gi|196171458|gb|ACG72431.1| signal peptide peptidase SppA, 36K type [Anaeromyxobacter sp. K]
          Length = 834

 Score = 36.0 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)

Query: 176 TYEEVEKTLDRDHIMSASEACDWGVVDKV 204
             E V   +D+    +A EA + G+VD V
Sbjct: 476 PPERVRALVDQGLF-TAEEAKEAGLVDAV 503


>gi|195641902|gb|ACG40419.1| delta3,5-delta2,4-dienoyl-CoA isomerase [Zea mays]
          Length = 280

 Score = 36.0 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 40/140 (28%), Gaps = 45/140 (32%)

Query: 86  VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS-----AGEKGMRFALPNARILL--- 137
           V    A    ++  + P+     G     G  L++        +   F L    + +   
Sbjct: 112 VLDMXAALTXIERCRKPVVAAVHGACVGGGVDLVAACDIRCCSRDASFVLKEVDMAIVAD 171

Query: 138 -----HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
                  P     G A+D+                      G+               +A
Sbjct: 172 LGALQRLPRIVGYGNAADLAL-------------------TGRKI-------------TA 199

Query: 193 SEACDWGVVDKVLMSRIDIE 212
            EA + G+V +V  S+ D++
Sbjct: 200 MEAKEMGLVTRVFDSKQDLD 219


>gi|254480150|ref|ZP_05093398.1| enoyl-CoA hydratase/isomerase family protein [marine gamma
           proteobacterium HTCC2148]
 gi|214039712|gb|EEB80371.1| enoyl-CoA hydratase/isomerase family protein [marine gamma
           proteobacterium HTCC2148]
          Length = 262

 Score = 36.0 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 1/36 (2%)

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           E+ +  +  +SA EA DWG+V++V+ +  D+ EK++
Sbjct: 161 EEMMVTNRQLSAEEAMDWGIVNQVVET-SDLMEKAQ 195


>gi|6723221|dbj|BAA89619.1| capsid protein [Bacteriophage WO]
          Length = 113

 Score = 36.0 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 7/51 (13%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           +++ ++     ++  +N G + E++ ++ +        +A + G+ D V  
Sbjct: 7   KEVDRLYEMFLQLIARNRGLSIEKI-RSTEAGLYF-GEKAVEIGLADGVTT 55


>gi|290968387|ref|ZP_06559927.1| signal peptide peptidase SppA, 36K type [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290781574|gb|EFD94162.1| signal peptide peptidase SppA, 36K type [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 315

 Score = 35.6 bits (81), Expect = 4.1,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 59/186 (31%), Gaps = 36/186 (19%)

Query: 51  IEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK---PPISTFC 107
                A  +  Q+    A+     I L I+SPGG   A   I   +Q  K    P+    
Sbjct: 63  TGGATAPSLMKQIRQATADAEVGAILLRIDSPGGSAAATQEIARELQRAKDNHIPVVVSM 122

Query: 108 MGQAASMGSLLLSAGEKGMRFALPNA-------RILLHQPSGGFS-----------GQAS 149
              AAS G  L   G+    FA P+         +  +   G              G   
Sbjct: 123 GDTAASGGYWLAVYGDTL--FADPSTITGSIGVYMSYYDARGLSRKLGIREEKIKSGAHK 180

Query: 150 DI-----ERHAQDIVKIKRRLNEIY-------VKNCGKTYEEVEKTLDRDHIMSASEACD 197
           DI        A++    +  +NE+Y        K      E V    D     + S A  
Sbjct: 181 DIFSPFRPMTAEEKQMTQDMVNEMYNQFVTVVAKERHMRPETVRALADGRVY-TGSRAKA 239

Query: 198 WGVVDK 203
            G+VD+
Sbjct: 240 LGLVDR 245


>gi|255018928|ref|ZP_05291054.1| hypothetical protein LmonF_16516 [Listeria monocytogenes FSL
           F2-515]
          Length = 84

 Score = 35.6 bits (81), Expect = 4.1,   Method: Composition-based stats.
 Identities = 4/23 (17%), Positives = 13/23 (56%)

Query: 183 TLDRDHIMSASEACDWGVVDKVL 205
            +  +  +++ +A + G+ D V+
Sbjct: 1   MMGEETWLNSQQAVELGLADGVM 23


>gi|316936707|gb|ADU60348.1| capsid protein [Wolbachia phage WO]
          Length = 140

 Score = 35.6 bits (81), Expect = 4.2,   Method: Composition-based stats.
 Identities = 7/49 (14%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           +++ ++     ++  +N G + E++ ++ +        +A + G+ D V
Sbjct: 16  KEVDRLYEMFVQLIARNRGLSIEKI-RSTEAGLYF-GEKAVEIGLADGV 62


>gi|21673625|ref|NP_661690.1| NfeD protein [Chlorobium tepidum TLS]
 gi|21646741|gb|AAM72032.1| nfeD protein [Chlorobium tepidum TLS]
          Length = 437

 Score = 35.6 bits (81), Expect = 4.2,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 69/178 (38%), Gaps = 15/178 (8%)

Query: 41  KERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYI--NSPGGVVTAGMAIYDTMQF 98
           + R + +TG +    A      L  L+  N   +  L +  ++PGG+V++   +   +  
Sbjct: 30  QIRAMSLTGSVNAGSAAYF---LRVLDEANRDNDTLLLVELDTPGGLVSSLRQMVQGVMA 86

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFAL-PNARILLHQPSGGFSGQASDIERHAQD 157
            + P+  +     A   S            A+ P        P     G     E+ +  
Sbjct: 87  SRVPVVVYVAPSGAQAASAGALLLLSANVAAMAPGTETGAAHPVDISGGG----EKGSVM 142

Query: 158 IVKIKRRLN---EIYVKNCGKTYEEVEKTLDRDHIM-SASEACDWGVVDKVLMSRIDI 211
             KI+  L        +  G++ E  E+ + R+ I  +ASEA   GV+D V  +R ++
Sbjct: 143 GKKIENDLAAFARSLAQKRGRSPEWAERAV-RESIASTASEALAAGVIDTVADNRKEL 199


>gi|46241425|gb|AAS82912.1| capsid protein [Wolbachia phage WO]
          Length = 127

 Score = 35.6 bits (81), Expect = 4.3,   Method: Composition-based stats.
 Identities = 7/49 (14%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           +++ ++     ++  +N G + E++ ++ +        +A + G+ D V
Sbjct: 1   KEVDRLYEMFVQLIARNRGLSIEKI-RSTEAGLYF-GEKAVEIGLADGV 47


>gi|291527052|emb|CBK92638.1| Actin-like ATPase involved in cell division [Eubacterium rectale
           M104/1]
          Length = 742

 Score = 35.6 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
             F +    +  H+      GQ  DI R A+ I ++K  L     K  G+  EEV
Sbjct: 25  KEFVVTAQYVREHETRAMLDGQIHDIGRVAKTIKEVKDELE----KQTGQPLEEV 75


>gi|291525361|emb|CBK90948.1| Actin-like ATPase involved in cell division [Eubacterium rectale
           DSM 17629]
          Length = 742

 Score = 35.6 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
             F +    +  H+      GQ  DI R A+ I ++K  L     K  G+  EEV
Sbjct: 25  KEFVVTAQYVREHETRAMLDGQIHDIGRVAKTIKEVKDELE----KQTGQPLEEV 75


>gi|149176651|ref|ZP_01855263.1| Periplasmic serine protease [Planctomyces maris DSM 8797]
 gi|148844530|gb|EDL58881.1| Periplasmic serine protease [Planctomyces maris DSM 8797]
          Length = 603

 Score = 35.6 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 164 RLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           ++  +   + G + E+VE  ++    M A+EA   G++D +
Sbjct: 209 QITGMISASRGLSAEKVEAAINGGPYM-AAEAKKLGLIDHI 248


>gi|67538408|ref|XP_662978.1| hypothetical protein AN5374.2 [Aspergillus nidulans FGSC A4]
 gi|40743344|gb|EAA62534.1| predicted protein [Aspergillus nidulans FGSC A4]
 gi|259485182|tpe|CBF82014.1| TPA: conserved hypothetical protein [Aspergillus nidulans FGSC A4]
          Length = 395

 Score = 35.6 bits (81), Expect = 4.5,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 22/107 (20%)

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIK 162
           I  +  G+ AS+ S +    ++  R  +    + + Q       QA ++ER  +++ ++K
Sbjct: 224 IEGYIDGRCASIVSSI----DREQRSMVWETELRIFQ-------QAHELERAKKEVARLK 272

Query: 163 RRLN------EIYVKN---CGKTYEEVEKTLDRDH--IMSASEACDW 198
            R+        IY        +  EEV++   RD   +M A E   W
Sbjct: 273 ERIKDLQVAGRIYRDKLTMATQGIEEVKEQWRRDKSDLMDARECITW 319


>gi|212638812|ref|YP_002315332.1| acetyl-CoA carboxylase, carboxyltransferase subunits alpha and beta
           [Anoxybacillus flavithermus WK1]
 gi|212560292|gb|ACJ33347.1| Acetyl-CoA carboxylase, carboxyltransferase component (subunits
           alpha and beta) [Anoxybacillus flavithermus WK1]
          Length = 516

 Score = 35.6 bits (81), Expect = 4.5,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 20/83 (24%)

Query: 128 FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD-- 185
           +A PNA I +  P G  +         A +I            +N     E   + ++  
Sbjct: 422 YAWPNAEIAVMGPQGAAN------IIFAGEI------------ENSPNPEETRAQKIEEY 463

Query: 186 RDHIMSASEACDWGVVDKVLMSR 208
           RD   +   A  +G+VD V+  R
Sbjct: 464 RDKFANPYVAAKYGMVDDVIDPR 486


>gi|158425341|ref|YP_001526633.1| peptidase S49 protein [Azorhizobium caulinodans ORS 571]
 gi|158332230|dbj|BAF89715.1| peptidase S49 protein [Azorhizobium caulinodans ORS 571]
          Length = 323

 Score = 35.6 bits (81), Expect = 4.5,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 6/83 (7%)

Query: 62  QLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQF--IKPPISTFCMGQAASMGSLLL 119
           ++L     +  + + + I+SPGG VT    +YD ++    K P+     G AAS G  + 
Sbjct: 69  KMLEEIGRSNARAVIVSIDSPGGTVTGAEQLYDALRQLAAKKPVVAVVEGMAAS-GGYIA 127

Query: 120 SAGEK---GMRFALPNARILLHQ 139
           + G       R A+  +  ++ Q
Sbjct: 128 AIGSDHIVSRRNAMVGSIGVIFQ 150


>gi|189346418|ref|YP_001942947.1| carboxyl transferase [Chlorobium limicola DSM 245]
 gi|189340565|gb|ACD89968.1| carboxyl transferase [Chlorobium limicola DSM 245]
          Length = 564

 Score = 35.6 bits (81), Expect = 4.6,   Method: Composition-based stats.
 Identities = 7/23 (30%), Positives = 12/23 (52%)

Query: 186 RDHIMSASEACDWGVVDKVLMSR 208
           RD   +  EA  +G +D ++  R
Sbjct: 512 RDKFANPYEAAKYGYIDDIIEPR 534


>gi|13540860|ref|NP_110548.1| secreted serine protease (ClpP class) [Thermoplasma volcanium GSS1]
 gi|14324243|dbj|BAB59171.1| proteinase IV [Thermoplasma volcanium GSS1]
 gi|215414354|emb|CAT00893.1| signal peptide peptidase-like protein [Thermoplasma volcanium GSS1]
          Length = 230

 Score = 35.6 bits (81), Expect = 4.6,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 69/190 (36%), Gaps = 31/190 (16%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ--FIKPP 102
           + + G I   +   +   L   E +     + L  NS GG   +   I+D ++    K P
Sbjct: 6   INIEGTINYGLYKYLYPALKAAEGKKSIAGLILVFNSGGGDAASSQLIHDLVKKIRKKKP 65

Query: 103 ISTFCMGQAASMGSLLLS------------AGEKGMRFALPNARILLHQPSGGF----SG 146
           + +  +G  AS    + S             G  G+    PN + L+ +         SG
Sbjct: 66  VYSLALGICASGAYWIASASTKIYAIDTSLIGSIGVISIRPNVKKLMEKIGVDVMVYKSG 125

Query: 147 QASDI------------ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           +  D+              + + +  I  +      ++ G   E++++  +     SA  
Sbjct: 126 KYKDMTSPFSEPNEEEKSVYQRLLDDIFEKFKRSVAEDRGIPSEKIDEIANGMVY-SAKM 184

Query: 195 ACDWGVVDKV 204
           A D G++D++
Sbjct: 185 AADNGLIDRI 194


>gi|238923924|ref|YP_002937440.1| cell division protein FtsA [Eubacterium rectale ATCC 33656]
 gi|238875599|gb|ACR75306.1| cell division protein FtsA [Eubacterium rectale ATCC 33656]
          Length = 744

 Score = 35.6 bits (81), Expect = 4.6,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
             F +    +  H+      GQ  DI R A+ I ++K  L     K  G+  EEV
Sbjct: 27  KEFVVTAQYVREHETRAMLDGQIHDIGRVAKTIKEVKDELE----KQTGQPLEEV 77


>gi|170080914|ref|YP_001730234.1| head protein [Escherichia coli str. K-12 substr. DH10B]
 gi|169888749|gb|ACB02456.1| head protein [Escherichia coli str. K-12 substr. DH10B]
 gi|312019774|emb|CBH95056.1| gpC [Enterobacteria phage phi80]
          Length = 447

 Score = 35.6 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 63/183 (34%), Gaps = 36/183 (19%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASM 114
             I A+L    ++     I L +++PGG+V+      D +  ++   PI         S 
Sbjct: 110 NGIIARLQQAISDPGVDGILLDMDTPGGMVSGAFDCADIIARMRDIKPIWALANDMNCSA 169

Query: 115 GSLLLSAGEKGMRFALPNAR------ILLHQPSG------------GFSGQAS------- 149
           G L+ S+  +  R     AR      ++ H   G             +SG          
Sbjct: 170 GQLIASSASR--RLVTQTARTGSIGVMMAHSNYGAALKTNGVEVTLIYSGDRKVDGNPYE 227

Query: 150 ----DIE-RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
               D+       I   ++   E      G + ++V    +     S  E+ D G+ D++
Sbjct: 228 KLPKDVRADFQTRIDATRQMFAEKVSAYTGMSVQDVL-DTEAAVF-SGQESLDNGLADEL 285

Query: 205 LMS 207
           + +
Sbjct: 286 VNN 288


>gi|15643678|ref|NP_228724.1| hypothetical protein TM0916 [Thermotoga maritima MSB8]
 gi|4981452|gb|AAD35997.1|AE001755_20 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 284

 Score = 35.6 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 1/85 (1%)

Query: 44  IVFVTGQIEDHMATLICAQLLF-LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           I F+   +  ++      ++L  ++       I L +++PGG+V A   I   ++  K  
Sbjct: 59  ISFLGFPVRRYIDIEDSEEILRAIKLTPSDMPIDLILHTPGGLVLAAEQIARALKMHKGK 118

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMR 127
           ++ F    A S G+L+  A ++ + 
Sbjct: 119 VTVFVPHYAMSGGTLIALAADEIIM 143


>gi|148269156|ref|YP_001243616.1| hypothetical protein Tpet_0011 [Thermotoga petrophila RKU-1]
 gi|281411454|ref|YP_003345533.1| protein of unknown function DUF114 [Thermotoga naphthophila RKU-10]
 gi|147734700|gb|ABQ46040.1| protein of unknown function DUF114 [Thermotoga petrophila RKU-1]
 gi|281372557|gb|ADA66119.1| protein of unknown function DUF114 [Thermotoga naphthophila RKU-10]
          Length = 284

 Score = 35.6 bits (81), Expect = 4.8,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 1/85 (1%)

Query: 44  IVFVTGQIEDHMATLICAQLLF-LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           I F+   +  ++      ++L  ++       I L +++PGG+V A   I   ++  K  
Sbjct: 59  ISFLGFPVRRYIDIEDSEEILRAIKLTPSDMPIDLILHTPGGLVLAAEQIARALKMHKGK 118

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMR 127
           ++ F    A S G+L+  A ++ + 
Sbjct: 119 VTVFVPHYAMSGGTLIALAADEIIM 143


>gi|295400922|ref|ZP_06810898.1| Enoyl-CoA hydratase/isomerase [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312111232|ref|YP_003989548.1| enoyl-CoA hydratase/isomerase [Geobacillus sp. Y4.1MC1]
 gi|294977185|gb|EFG52787.1| Enoyl-CoA hydratase/isomerase [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311216333|gb|ADP74937.1| Enoyl-CoA hydratase/isomerase [Geobacillus sp. Y4.1MC1]
          Length = 254

 Score = 35.6 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 6/49 (12%)

Query: 168 IYVKNCGKTYEE--VEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           +  K  G+   +  + +      +M+A EA + G+VD V+      EEK
Sbjct: 145 LLAKRVGQVKAKHIIWE----GKLMNAEEAYELGIVDIVVDDEAKAEEK 189


>gi|242399808|ref|YP_002995233.1| hypothetical protein TSIB_1833 [Thermococcus sibiricus MM 739]
 gi|242266202|gb|ACS90884.1| hypothetical protein TSIB_1833 [Thermococcus sibiricus MM 739]
          Length = 248

 Score = 35.6 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 70  NPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFA 129
              K I L I++PGG+V A   I   ++             A S G+L+  A ++     
Sbjct: 55  PKDKPIDLIIHTPGGLVLAATQIAKALKDHPAKTRVIIPHYAMSGGTLIALAADEI--IM 112

Query: 130 LPNARI 135
            P+A +
Sbjct: 113 DPHAVL 118


>gi|152978941|ref|YP_001344570.1| putative periplasmic protease [Actinobacillus succinogenes 130Z]
 gi|150840664|gb|ABR74635.1| Peptidase S49 domain protein [Actinobacillus succinogenes 130Z]
          Length = 353

 Score = 35.6 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207
           ++  Q++ +          +N  +   EVEK    +H     +A   G++DK+  S
Sbjct: 249 QKFQQELEETHELFKRFVAEN--RPQLEVEKIATGEHWF-GQQALALGLIDKIATS 301


>gi|145344713|ref|XP_001416871.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577097|gb|ABO95164.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 940

 Score = 35.6 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 63/174 (36%), Gaps = 18/174 (10%)

Query: 18  LVP-MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
           +VP    E     +    ++ R+L+ER+  V   +       I A ++     + Q  ++
Sbjct: 106 IVPGYFSEGMTAAKLDQRVFMRILRERLPSVGLHVGALGPDDIIAAIM-----SGQWLLT 160

Query: 77  LYINSPGGVVTAGMAIYDTM--QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134
           L++N       A M ++D M     + P+   C+         +L+  E G    L    
Sbjct: 161 LFVN--VLPTRATMEVWDEMFRHRHRAPLFAACVALLERNAQAILATTEMGEAIELLQRC 218

Query: 135 --ILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
              L   P+    G A D       + +++  L+         +  +V++   R
Sbjct: 219 SESLRRAPASEGEGDACDEAECDAFLARVRELLSNEL------SPAKVDELTAR 266


>gi|116626894|ref|YP_829050.1| signal peptide peptidase SppA, 67K type [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116230056|gb|ABJ88765.1| signal peptide peptidase SppA, 67K type [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 573

 Score = 35.6 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 69/168 (41%), Gaps = 35/168 (20%)

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQ--FIKPPISTFCMGQAASMGSLLLSAGEK- 124
           +++  K + + I+SPGG VTA   I+  M     K P+       AAS G  +   G+  
Sbjct: 330 SDSQIKAVIVRIDSPGGEVTASDEIWREMNLLAKKKPMVISMSDTAASGGYYMAMTGDPI 389

Query: 125 -----------GMRFALPNARILLHQPS----GGFSGQASDIE-----RHAQDIVKIKRR 164
                      G+ F  PN R L  +          G+ +DI+        +   K++  
Sbjct: 390 VAYPATFTGSIGVVFGKPNIRGLYEKLGISKDAIQRGKNADIDSDYTPLTPEQRAKLRAG 449

Query: 165 LNEIY---------VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
           ++E Y          ++  +T++++++       +  S+A   G+VD+
Sbjct: 450 IDESYQDFVTKVANARH--RTFDQIDQVAQGRVWL-GSQAKPRGLVDE 494


>gi|170287818|ref|YP_001738056.1| hypothetical protein TRQ2_0011 [Thermotoga sp. RQ2]
 gi|170175321|gb|ACB08373.1| protein of unknown function DUF114 [Thermotoga sp. RQ2]
          Length = 284

 Score = 35.6 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 1/85 (1%)

Query: 44  IVFVTGQIEDHMATLICAQLLF-LEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           I F+   +  ++      ++L  ++       I L +++PGG+V A   I   ++  K  
Sbjct: 59  ISFLGFPVRRYIDIEDSEEILRAIKLTPSDMPIDLILHTPGGLVLAAEQIARALKMHKGK 118

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMR 127
           ++ F    A S G+L+  A ++ + 
Sbjct: 119 VTVFVPHYAMSGGTLIALAADEIIM 143


>gi|316936723|gb|ADU60356.1| capsid protein [Wolbachia phage WO]
          Length = 135

 Score = 35.6 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 7/49 (14%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           +++ ++     ++  +N G + E++ ++ +        +A + G+ D V
Sbjct: 16  KEVDRLYEMFLQLIARNRGLSIEKI-RSTEAGLYF-GEKAVEIGLADGV 62


>gi|253796882|gb|ACT35696.1| capsid protein [Wolbachia phage WO]
          Length = 119

 Score = 35.6 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           +E   ++I ++     ++  +N G + E++ ++ +         A + G+ D +
Sbjct: 6   LESLQKEIDRLYEMFVQLIARNRGLSIEKI-RSTEAGLYF-GERAIEIGLADGI 57


>gi|316936717|gb|ADU60353.1| capsid protein [Wolbachia phage WO]
          Length = 132

 Score = 35.6 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 7/49 (14%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           +++ ++     ++  +N G + E++ ++ +        +A + G+ D V
Sbjct: 16  KEVDRLYEMFLQLIARNRGLSIEKI-RSTEAGLYF-GEKAVEIGLADGV 62


>gi|213962885|ref|ZP_03391145.1| signal peptide peptidase SppA, 67K type [Capnocytophaga sputigena
           Capno]
 gi|213954542|gb|EEB65864.1| signal peptide peptidase SppA, 67K type [Capnocytophaga sputigena
           Capno]
          Length = 590

 Score = 35.6 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 60/177 (33%), Gaps = 31/177 (17%)

Query: 57  TLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ--FIKPPISTFCMGQAASM 114
             I   L     +   K I L INSPGG   A   ++  ++    K  +       AAS 
Sbjct: 332 ETIIRALRKAADKKEVKAIVLRINSPGGDALASELMHREIEITKKKKKVYVSMGNYAASG 391

Query: 115 GSLLLSA------------GEKGMRFALPNAR------------ILLHQPSGGFSGQASD 150
           G  +               G  G+   +PN              +  H  +  +S     
Sbjct: 392 GYYIACNANRIFAEEGTITGSIGVFGVIPNVNALATNWGITAETVSTHPNAQWYSLYQKP 451

Query: 151 IERHAQDIVKIKRRLNEIYVKNC----GKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
            E+  +++ +   ++  +++       GKT  +++         S  EA   G+VD+
Sbjct: 452 TEQFRKEMTESIEQVYTVFLDRVAQGRGKTVAQIDSIAQGRVW-SGKEALANGLVDE 507


>gi|242280848|ref|YP_002992977.1| signal peptide peptidase SppA, 36K type [Desulfovibrio salexigens
           DSM 2638]
 gi|242123742|gb|ACS81438.1| signal peptide peptidase SppA, 36K type [Desulfovibrio salexigens
           DSM 2638]
          Length = 293

 Score = 35.2 bits (80), Expect = 5.3,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 59/175 (33%), Gaps = 31/175 (17%)

Query: 60  CAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAA------- 112
              L  L  ++  K + L +NSPGG +     +Y  ++ +   +                
Sbjct: 63  VKFLRDLRRDDSVKGVLLRVNSPGGTIAPSQELYHAVKRL-AEVKPIVASFGTVAASGGY 121

Query: 113 ----SMGSLLLSAGEKGMRFALPNARILLHQ--------PSGGFSGQASDIERHAQDIV- 159
                   ++ S+G       +       HQ        P    SG+         ++  
Sbjct: 122 YAAAPATKIMASSGSITGSIGVKAEYANFHQLMEKIGVKPVIITSGKMKAAGSPFTELTP 181

Query: 160 KIKRRLNEIYVKNCGKTYEEVE--KTLDRD--------HIMSASEACDWGVVDKV 204
           + +  L  + +    +  ++V   + LDR+          ++  EA + G+VD++
Sbjct: 182 EQREYLTALIMDMHNQFVDDVASARKLDREQVEKIADGRAITGREAKELGLVDRI 236


>gi|303248889|ref|ZP_07335137.1| Enoyl-CoA hydratase/isomerase [Desulfovibrio fructosovorans JJ]
 gi|302489688|gb|EFL49623.1| Enoyl-CoA hydratase/isomerase [Desulfovibrio fructosovorans JJ]
          Length = 267

 Score = 35.2 bits (80), Expect = 5.5,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 190 MSASEACDWGVVDKVLMSRIDIEEKSK 216
            SA EA D G+VDK++ +    EE  K
Sbjct: 179 FSAEEALDLGIVDKIVPAARLEEEAIK 205


>gi|158521991|ref|YP_001529861.1| signal peptide peptidase SppA, 36K type [Desulfococcus oleovorans
           Hxd3]
 gi|158510817|gb|ABW67784.1| signal peptide peptidase SppA, 36K type [Desulfococcus oleovorans
           Hxd3]
          Length = 299

 Score = 35.2 bits (80), Expect = 5.5,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 66/183 (36%), Gaps = 39/183 (21%)

Query: 55  MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASM 114
            +  +  +L     E+  + I + I+SPGG V     I+  +               ASM
Sbjct: 56  SSEQVIEELKTFREEDAIRAIVVRIDSPGGAVGPAQEIFREIHKTAATKKV-----VASM 110

Query: 115 GSLLLSAG-----EKGMRFALPNA------RILLHQ------------PSGGFSGQASDI 151
           GS+  S G          FA P         I+ +             P    SG+  DI
Sbjct: 111 GSVAASGGYYVASATEKIFANPGTLTGSIGVIMSYTNFQELMDKIGLLPVVIKSGKYKDI 170

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKT-YEEVE--KTLDRD--------HIMSASEACDWGV 200
               + + + ++R+ + +  +  +   ++V   + +D           I +  +A + G+
Sbjct: 171 GSPVRPLEEREKRILQEFADDIHQQFIDDVAAGRNMDAGAVAKLADGRIYTGRKALELGL 230

Query: 201 VDK 203
           VD+
Sbjct: 231 VDE 233


>gi|242381153|emb|CAS03780.1| capside protein [Wolbachia phage WO]
          Length = 124

 Score = 35.2 bits (80), Expect = 5.6,   Method: Composition-based stats.
 Identities = 7/49 (14%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           +++ ++     ++  +N G + E++ ++ +        +A + G+ D V
Sbjct: 3   KEVDRLYEMFLQLIARNRGLSIEKI-RSTEAGLYF-GEKAVEIGLADGV 49


>gi|226314587|ref|YP_002774483.1| enoyl-CoA hydratase [Brevibacillus brevis NBRC 100599]
 gi|226097537|dbj|BAH45979.1| probable enoyl-CoA hydratase [Brevibacillus brevis NBRC 100599]
          Length = 257

 Score = 35.2 bits (80), Expect = 5.6,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 70/193 (36%), Gaps = 45/193 (23%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           L L+  +V+Q  + +R  DI       R++ +TG      A     +++   A +  K  
Sbjct: 30  LQLIDELVDQLEQMDRDPDI-------RVIILTGNARAFAAGADINEMVEASAIDIMKRN 82

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
                          A++D +  I  PI     G     G  L+   +      + +   
Sbjct: 83  Q-------------FAVWDRISLISKPIIGAVSGFVLGGGCELMMNCD----IVIASETA 125

Query: 136 LLHQP---SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192
           ++ QP    G   G A   +R  + + + ++ L  +     G+               SA
Sbjct: 126 VIGQPEIKLGVMPG-AGGTQRLTRVVGE-RKALEMLL---TGEPI-------------SA 167

Query: 193 SEACDWGVVDKVL 205
            EA  +G+V++V+
Sbjct: 168 KEALKYGLVNRVV 180


>gi|158340157|ref|YP_001521327.1| sigma-28 subunit [Acaryochloris marina MBIC11017]
 gi|158310398|gb|ABW32013.1| sigma-28 subunit [Acaryochloris marina MBIC11017]
          Length = 421

 Score = 35.2 bits (80), Expect = 5.7,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 9/110 (8%)

Query: 86  VTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS 145
           V      Y  +      ++    G A ++    +S G K   +A+   R  + Q      
Sbjct: 48  VFKEANRYRGLDDWNDLVTAGNWGLARAIEKFDVSKGCKFSSYAVKVIRTEIQQFLNDQR 107

Query: 146 GQASDIERHAQDIVKIKRRLN---------EIYVKNCGKTYEEVEKTLDR 186
           G + +I +H +DI +  ++L          E   +  G +   +  TLDR
Sbjct: 108 GLSKEIAKHLKDIKQASQKLEWELERQPTLEELSERTGYSQRIITSTLDR 157


>gi|52145328|gb|AAU29368.1| putative capsid protein [Wolbachia phage WO]
          Length = 118

 Score = 35.2 bits (80), Expect = 5.8,   Method: Composition-based stats.
 Identities = 7/49 (14%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           +++ ++     ++  +N G + E++ ++ +        +A + G+ D V
Sbjct: 7   KEVDRLYEMFVQLIARNRGLSIEKI-RSTEAGLYF-GEKAIEIGLADGV 53


>gi|281487005|gb|ADA71054.1| putative capsid protein [Wolbachia phage WO]
          Length = 118

 Score = 35.2 bits (80), Expect = 5.8,   Method: Composition-based stats.
 Identities = 6/49 (12%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           +++ ++     ++  +N G + E++ ++ +        +A + G+ D +
Sbjct: 7   KEVGRLYEMFLQLIARNRGLSIEKI-RSTEAGLYF-GEKAVEIGLADGI 53


>gi|316936725|gb|ADU60357.1| capsid protein [Wolbachia phage WO]
          Length = 135

 Score = 35.2 bits (80), Expect = 6.0,   Method: Composition-based stats.
 Identities = 7/51 (13%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           +++ ++     ++  +N G + E++ ++ +        +A + G+ D V  
Sbjct: 16  KEVDRLYEMFLQLIARNRGLSIEKI-RSTEAGLYF-GEKAVEIGLADGVTT 64


>gi|316936715|gb|ADU60352.1| capsid protein [Wolbachia phage WO]
          Length = 135

 Score = 35.2 bits (80), Expect = 6.0,   Method: Composition-based stats.
 Identities = 7/49 (14%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           +++ ++     ++  +N G + E++ ++ +        +A + G+ D V
Sbjct: 16  KEVGRLYEMFLQLIARNRGLSIEKI-RSTEAGLYF-GEKAVEIGLADGV 62


>gi|71278238|ref|YP_267321.1| enoyl-CoA hydratase [Colwellia psychrerythraea 34H]
 gi|71143978|gb|AAZ24451.1| enoyl-CoA hydratase/isomerase family protein [Colwellia
           psychrerythraea 34H]
          Length = 273

 Score = 35.2 bits (80), Expect = 6.0,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 41/110 (37%), Gaps = 23/110 (20%)

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI--ERH 154
           + I  P+     G+    G  +   G+   R + P+A I + +      G   D+     
Sbjct: 104 REIPAPVIVVIKGRCWGGGLQIALGGD--FRISTPDASISIMESR---WGLIPDMGGTLA 158

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
            ++++++ +       K    T E +          +  +A ++G+V  V
Sbjct: 159 LKELLRLDK------AKELAMTGEVI----------TGLQALEYGLVTHV 192


>gi|304438077|ref|ZP_07398021.1| succinate-semialdehyde dehydrogenase [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304369031|gb|EFM22712.1| succinate-semialdehyde dehydrogenase [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 475

 Score = 35.2 bits (80), Expect = 6.0,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 3/84 (3%)

Query: 116 SLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK 175
           + + +AG+K +R A+  A    H        +   I R A  + + +    E      GK
Sbjct: 31  AEICTAGQKEVRAAVDAAERAFHTVELSPYERYEIIMRAANLMRERREEFAEALSAEAGK 90

Query: 176 TYEEVEKTLDRDH---IMSASEAC 196
              +    +DR +   I+SA EA 
Sbjct: 91  PIRDARGEIDRSYQTLILSAEEAK 114


>gi|256425257|ref|YP_003125910.1| enoyl-CoA hydratase/isomerase [Chitinophaga pinensis DSM 2588]
 gi|256040165|gb|ACU63709.1| Enoyl-CoA hydratase/isomerase [Chitinophaga pinensis DSM 2588]
          Length = 259

 Score = 35.2 bits (80), Expect = 6.0,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 56/168 (33%), Gaps = 42/168 (25%)

Query: 43  RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           R + ++G  +   A     Q+    A     ++    N            +DT++  K P
Sbjct: 52  RAIVISGNEKAFAAGADIKQM----AGKTAMDMY---NIDQFST------WDTIKKTKKP 98

Query: 103 ISTFCMGQAASMGSLLLSAGE-----KGMRFALPNARILLHQPSGGFSGQASDIERHAQD 157
           +     G A   G  L+   +     +  RF  P  +I +   +GG              
Sbjct: 99  LIAAVSGFALGGGCELVMLCDMIVASETARFGQPEIKIGVMPGAGGTQ------------ 146

Query: 158 IVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
             ++ R + +              + +     ++A EA   G++++V+
Sbjct: 147 --RLTRAVGKALA----------MEMVLTGRFITAQEAARAGLINRVI 182


>gi|255523985|ref|ZP_05390947.1| acetyl-CoA carboxylase, carboxyl transferase, alpha subunit
           [Clostridium carboxidivorans P7]
 gi|296186845|ref|ZP_06855246.1| acetyl-CoA carboxylase, carboxyl transferase, alpha subunit
           [Clostridium carboxidivorans P7]
 gi|255512272|gb|EET88550.1| acetyl-CoA carboxylase, carboxyl transferase, alpha subunit
           [Clostridium carboxidivorans P7]
 gi|296048559|gb|EFG87992.1| acetyl-CoA carboxylase, carboxyl transferase, alpha subunit
           [Clostridium carboxidivorans P7]
          Length = 281

 Score = 35.2 bits (80), Expect = 6.1,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 29/110 (26%)

Query: 96  MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHA 155
           M  +K P+ +  +G+  S G+L  +  +    + L N+   +  P G  S          
Sbjct: 148 MSKLKTPVISIVIGEGGSGGALAFAVADDV--WMLENSVYSVLSPEGFAS-------ILW 198

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           +D  + K                EV K       ++A +  ++G++DKV+
Sbjct: 199 KDASRAKEA-------------AEVMK-------ITAKDLKEYGIIDKVI 228


>gi|316936727|gb|ADU60358.1| capsid protein [Wolbachia phage WO]
 gi|316936729|gb|ADU60359.1| capsid protein [Wolbachia phage WO]
          Length = 137

 Score = 35.2 bits (80), Expect = 6.1,   Method: Composition-based stats.
 Identities = 7/54 (12%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           +E   +++ ++     ++  +N G + E++ ++ +        +A + G+ D +
Sbjct: 11  LESLQKEVDRLYEMFVQLIARNRGLSIEKI-RSTEAGLYF-GEKAIEIGLADGI 62


>gi|167461120|ref|ZP_02326209.1| enoyl-CoA hydratase [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 257

 Score = 35.2 bits (80), Expect = 6.1,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 29/120 (24%)

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE-----KGMRFALPNARILLHQPSGGF 144
            A++D +  I  PI     G     G  L+ + +     +  RF  P  ++ +   +GG 
Sbjct: 84  FAVWDCIGGISKPIIAAVSGHVLGGGCELMMSCDLVVASETARFGQPEIKLGVMPGAGGT 143

Query: 145 SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
                         V  ++ +  +     G T             M++ EA  +G+V+KV
Sbjct: 144 Q--------RLTKAVGTRKAMELLL---TGDT-------------MTSEEALRYGLVNKV 179


>gi|322384928|ref|ZP_08058584.1| enoyl-CoA hydratase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321150225|gb|EFX43732.1| enoyl-CoA hydratase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 234

 Score = 35.2 bits (80), Expect = 6.2,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 29/120 (24%)

Query: 90  MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE-----KGMRFALPNARILLHQPSGGF 144
            A++D +  I  PI     G     G  L+ + +     +  RF  P  ++ +   +GG 
Sbjct: 61  FAVWDCIGGISKPIIAAVSGHVLGGGCELMMSCDLVVASETARFGQPEIKLGVMPGAGGT 120

Query: 145 SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
                         V  ++ +  +     G T             M++ EA  +G+V+KV
Sbjct: 121 Q--------RLTKAVGTRKAMELLL---TGDT-------------MTSEEALRYGLVNKV 156


>gi|52145334|gb|AAU29371.1| putative capsid protein [Wolbachia phage WO]
          Length = 118

 Score = 35.2 bits (80), Expect = 6.3,   Method: Composition-based stats.
 Identities = 7/54 (12%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           +E   +++ ++     ++  +N G + E++ ++ +         A + G+ D +
Sbjct: 2   LESLQKEVDRLYEMFVQLIARNRGLSIEKI-RSTEAGLYF-GERAIEIGLADGI 53


>gi|281487011|gb|ADA71057.1| putative capsid protein [Wolbachia phage WO]
          Length = 118

 Score = 35.2 bits (80), Expect = 6.3,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           +E   +++ ++     ++  +N G + E++ ++ +        +A + GV D V
Sbjct: 2   LESLQKEVDRLYEMFVQLIARNRGLSIEKI-RSTEAGLYF-GEKAVEIGVADGV 53


>gi|316936711|gb|ADU60350.1| capsid protein [Wolbachia phage WO]
 gi|316936713|gb|ADU60351.1| capsid protein [Wolbachia phage WO]
          Length = 135

 Score = 35.2 bits (80), Expect = 6.4,   Method: Composition-based stats.
 Identities = 7/51 (13%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 156 QDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           +++ ++     ++  +N G + E++ ++ +        +A + G+ D V  
Sbjct: 16  KEVGRLYEMFLQLIARNRGLSIEKI-RSTEAGLYF-GEKAVEIGLADGVTT 64


>gi|84500602|ref|ZP_00998851.1| enoyl-CoA hydratase/isomerase family protein [Oceanicola batsensis
           HTCC2597]
 gi|84391555|gb|EAQ03887.1| enoyl-CoA hydratase/isomerase family protein [Oceanicola batsensis
           HTCC2597]
          Length = 202

 Score = 35.2 bits (80), Expect = 6.5,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 20/104 (19%)

Query: 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIK 162
           ++      A     + L+     +R A+P A++       GF  Q SD  R A  I   +
Sbjct: 88  VAALNGTLAGGAMGMALAC---DIRLAVPGAKVFYPVMKLGFLPQPSDPGRMAALIGPAR 144

Query: 163 RRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
            RL  I +   G+  E             A EA D+G++D+++ 
Sbjct: 145 TRL--ILMG--GQKIE-------------APEALDFGLIDRIVE 171


>gi|281487003|gb|ADA71053.1| putative capsid protein [Wolbachia phage WO]
          Length = 118

 Score = 35.2 bits (80), Expect = 6.5,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           +E   +++ ++     ++  +N G + E++ ++ +        +A + GV D V
Sbjct: 2   LESLQKEVDRLYEMFVQLIARNRGLSIEKI-RSTEAGLYF-GEKAVEIGVADGV 53


>gi|255036559|ref|YP_003087180.1| signal peptide peptidase SppA, 67K type [Dyadobacter fermentans DSM
           18053]
 gi|254949315|gb|ACT94015.1| signal peptide peptidase SppA, 67K type [Dyadobacter fermentans DSM
           18053]
          Length = 588

 Score = 35.2 bits (80), Expect = 6.8,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 55/181 (30%), Gaps = 38/181 (20%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ--FIKPPISTFCMGQAAS 113
           +     +L  +   +  K + + INSPGG   A   ++  +Q    K P+       AAS
Sbjct: 327 SEKFVKELKEIRENDKIKAVVIRINSPGGSALASDVMWREIQLTAKKKPVIASMSDVAAS 386

Query: 114 MGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI---------------------- 151
            G  +    +     A PN         G      +D                       
Sbjct: 387 GGYYMAMGCDTI--VAQPNTITGSIGIFGLIF-NVTDFMNNKLGITFDGVGTSPHADWPT 443

Query: 152 ---ERHAQDIVKIKRRLNEIYVKNCGK-------TYEEVEKTLDRDHIMSASEACDWGVV 201
              E    +   I++ +NE Y     K         E+++         S  EA   G+V
Sbjct: 444 ATREMTEFEKGMIQKSVNEGYETFTRKAAEGRKMPVEKLKSLAQGRVW-SGVEAKQNGLV 502

Query: 202 D 202
           D
Sbjct: 503 D 503


>gi|222151629|ref|YP_002560785.1| hypothetical protein MCCL_1382 [Macrococcus caseolyticus JCSC5402]
 gi|222120754|dbj|BAH18089.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 333

 Score = 35.2 bits (80), Expect = 6.8,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 63/175 (36%), Gaps = 33/175 (18%)

Query: 63  LLFLEAENPQKEI---SLYINSPGGVVTAGMAIYD---TMQFIKPPISTFCMGQAASMGS 116
           L  L+      +I    L +NSPGG V     I+D    ++     +       AAS G 
Sbjct: 87  LDSLDEVKDNGDIKALMLVVNSPGGGVYESAEIHDKIEAVKEAGKKVYVTMKNTAASGGY 146

Query: 117 LLLSAGEKGM--RFALPNARILLHQPSGG--------------FSGQASDIERHAQDIVK 160
            + +  +K    +  L  +  ++ Q                   SG   DI    +++ +
Sbjct: 147 YISAPADKIYASKETLTGSLGVIMQSMNYKELADKYGVKFNTIKSGPHKDIMSPTKEMDE 206

Query: 161 IKRRLNEIYVKNC----------GKTYEEVE-KTLDRDHIMSASEACDWGVVDKV 204
            +R + + +V             G+  ++ + K +    I S  +A    +VD++
Sbjct: 207 TERAILQKFVDESYEGFVNVISNGRHMDKAQVKKIADGRIYSGQQAQKLDLVDEI 261


>gi|319401503|gb|EFV89713.1| carbamoyl-phosphate synthase pyrimidine-specific large chain
           [Staphylococcus epidermidis FRI909]
          Length = 1057

 Score = 35.2 bits (80), Expect = 6.9,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 195 ACDWGVVDKVLMSRIDIEEKS 215
           A D+G  DKV+  R D+EEK 
Sbjct: 485 AKDYGFSDKVIAHRWDMEEKD 505


>gi|170751871|ref|YP_001758131.1| hypothetical protein Mrad2831_5503 [Methylobacterium radiotolerans
           JCM 2831]
 gi|170658393|gb|ACB27448.1| conserved hypothetical protein [Methylobacterium radiotolerans JCM
           2831]
          Length = 189

 Score = 35.2 bits (80), Expect = 6.9,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 38/111 (34%), Gaps = 23/111 (20%)

Query: 112 ASMGSLLLSAGEKGMRFALPNARILLH----QPSGGFSGQASDIERHAQDIVKIKRRLNE 167
            S G+  +S   +  R+     R+++H           G           I  +K  LNE
Sbjct: 85  YSAGTTFMSFFARPNRYLTCGTRLMIHERKMNKQLHVQGP------LTTCIASVKATLNE 138

Query: 168 IY-------------VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           I              V     T +EV +    +  + A EA   G+++ V+
Sbjct: 139 ILCSIEIQNEGFANLVAGSDVTLDEVLEKAPANWYLEAEEAKRRGLIEAVI 189


>gi|57866726|ref|YP_188352.1| carbamoyl phosphate synthase large subunit [Staphylococcus
           epidermidis RP62A]
 gi|242242485|ref|ZP_04796930.1| carbamoyl phosphate synthase large subunit [Staphylococcus
           epidermidis W23144]
 gi|81819410|sp|Q5HPY8|CARB_STAEQ RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|57637384|gb|AAW54172.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus
           epidermidis RP62A]
 gi|242234059|gb|EES36371.1| carbamoyl phosphate synthase large subunit [Staphylococcus
           epidermidis W23144]
          Length = 1057

 Score = 35.2 bits (80), Expect = 6.9,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 195 ACDWGVVDKVLMSRIDIEEKS 215
           A D+G  DKV+  R D+EEK 
Sbjct: 485 AKDYGFSDKVIAHRWDMEEKD 505


>gi|239904648|ref|YP_002951386.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
 gi|239794511|dbj|BAH73500.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
          Length = 442

 Score = 34.8 bits (79), Expect = 7.0,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 13/144 (9%)

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCM---GQAASMGSLLLSAGEKGMRFALPNA 133
           L +++PGG V     +  ++     P+  +      +AAS G  L++A         P  
Sbjct: 67  LSLDTPGGSVEVMRRMVGSILNAPMPVVVYVSPSGARAASAGVFLMAAATVA--AMAPQT 124

Query: 134 RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIY---VKNCGKTYEEVEKTLDRDHIM 190
            I    P G       D+ + +   +KIK  L  +        G+     +K +D    +
Sbjct: 125 TIGAASPIGLGG---IDLPKTSD--LKIKNDLTSLLRGLADRRGRNVNWYKKAVDEAATL 179

Query: 191 SASEACDWGVVDKVLMSRIDIEEK 214
           +A EA    VVD V +S  D+ E+
Sbjct: 180 TAPEAVAERVVDFVAVSPRDLLEQ 203


>gi|228922828|ref|ZP_04086126.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228836883|gb|EEM82226.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
          Length = 385

 Score = 34.8 bits (79), Expect = 7.2,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQ--PSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           A S    +    +K     L N         P+      A+D+   A++++K       +
Sbjct: 133 AGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMK-----YPL 187

Query: 169 YVKNCGKTYEEVEKTLDRDHIM 190
             K  GK  + + +  D+   +
Sbjct: 188 IRKYTGKYEDYLREDTDKKFWL 209


>gi|21228134|ref|NP_634056.1| nodulation protein [Methanosarcina mazei Go1]
 gi|20906579|gb|AAM31728.1| nodulation protein [Methanosarcina mazei Go1]
          Length = 434

 Score = 34.8 bits (79), Expect = 7.2,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 52/159 (32%), Gaps = 28/159 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM--GQAAS 113
           +  + A  + +      +   + +++PGG +     I   ++    P+  F    G+A S
Sbjct: 48  SDNLIADAIEIAENGNYEAFVITLDTPGGGLEETQIIIKAIENTTVPVIGFVPESGKAWS 107

Query: 114 MGSLLLSAGEKGMRFALPNARILLHQP-SGGFSGQASDIERHAQDIVKIKRRLNEIYVKN 172
            G+L+L   +       P   I   QP      G                 ++    VK 
Sbjct: 108 AGTLILMGTDIA--AMAPYTVIGSAQPVKMSAEGTVP----------VEDDKIINALVKF 155

Query: 173 CGKTYEEVEKTLDRDHI----------MSASEACDWGVV 201
              + E   K    +            ++  EA ++GV+
Sbjct: 156 ---SVETARKHGRNETFAEEVITKNRNLNDEEALEYGVI 191


>gi|218230756|ref|YP_002368880.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
           B4264]
 gi|218158713|gb|ACK58705.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
           B4264]
          Length = 396

 Score = 34.8 bits (79), Expect = 7.2,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQ--PSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           A S    +    +K     L N         P+      A+D+   A++++K       +
Sbjct: 144 AGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMK-----YPL 198

Query: 169 YVKNCGKTYEEVEKTLDRDHIM 190
             K  GK  + + +  D+   +
Sbjct: 199 IRKYTGKYEDYLREDTDKKFWL 220


>gi|47568129|ref|ZP_00238833.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9241]
 gi|47555119|gb|EAL13466.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9241]
          Length = 396

 Score = 34.8 bits (79), Expect = 7.3,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQ--PSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           A S    +    +K     L N         P+      A+D+   A++++K       +
Sbjct: 144 AGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHYSTANDMAIMAKELMK-----YPL 198

Query: 169 YVKNCGKTYEEVEKTLDRDHIM 190
             K  GK  + + +  D+   +
Sbjct: 199 IRKYTGKYEDYLREDTDKKFWL 220


>gi|330445595|ref|ZP_08309247.1| peptidase S49 family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489786|dbj|GAA03744.1| peptidase S49 family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 353

 Score = 34.8 bits (79), Expect = 7.4,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 60/150 (40%), Gaps = 29/150 (19%)

Query: 94  DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR--FALPNARILLHQ-PSGGFSGQASD 150
           D ++     ++      AAS G ++    +K +   FA+  +  ++ Q P+     + +D
Sbjct: 163 DRLKAAGIKLTVSVDKVAASGGYMMACVADKIVSAPFAIVGSIGVIAQLPNFNKLLKKND 222

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEE----VEK----------------TLDR---- 186
           I+       + KR L  ++ +N  K  E+    +E+                 L++    
Sbjct: 223 IDYEQITAGEFKRTLT-MFGENTDKAREKFQTEIEETHSLFKNFVAFHRPDLDLEKVATG 281

Query: 187 DHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           +H     +A D G+VD++  S   I E  K
Sbjct: 282 EHWF-GQQALDLGLVDQISTSDDLITEACK 310


>gi|269849077|gb|ACZ49687.1| ATP-dependent Clp protease proteolytic subunit [Volvox carteri f.
           nagariensis]
 gi|269849079|gb|ACZ49688.1| ATP-dependent Clp protease proteolytic subunit [Volvox carteri f.
           nagariensis]
 gi|269849081|gb|ACZ49689.1| ATP-dependent Clp protease proteolytic subunit [Volvox carteri f.
           nagariensis]
 gi|269849083|gb|ACZ49690.1| ATP-dependent Clp protease proteolytic subunit [Volvox carteri f.
           nagariensis]
 gi|269849085|gb|ACZ49691.1| ATP-dependent Clp protease proteolytic subunit [Volvox carteri f.
           nagariensis]
 gi|269849087|gb|ACZ49692.1| ATP-dependent Clp protease proteolytic subunit [Volvox carteri f.
           nagariensis]
 gi|269849089|gb|ACZ49693.1| ATP-dependent Clp protease proteolytic subunit [Volvox carteri f.
           nagariensis]
          Length = 380

 Score = 34.8 bits (79), Expect = 7.4,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 37/69 (53%)

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF 128
           E   K++ + INS GG V  G+ ++D +QFIK    T  +G AAS  SL L+ G  G R+
Sbjct: 312 EEESKKVFMIINSFGGSVGNGITVHDALQFIKAGSLTLALGVAASAASLALAGGTIGERY 371

Query: 129 ALPNARILL 137
                  ++
Sbjct: 372 VTEGCHTMI 380


>gi|85705956|ref|ZP_01037052.1| enoyl-CoA hydratase [Roseovarius sp. 217]
 gi|85669544|gb|EAQ24409.1| enoyl-CoA hydratase [Roseovarius sp. 217]
          Length = 259

 Score = 34.8 bits (79), Expect = 7.4,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 15/79 (18%)

Query: 150 DIERHAQDIVK---IKRRLNEIYVKNCGKTYEEVEKTLD----RDHIMSAS-----EACD 197
           DI   AQ++     I R L              +   +     R+ I +A      EA D
Sbjct: 121 DIRIAAQNLKFGFPIARTLGNCLAAA---NLARLSSLMGAGRVREMIFTARLISAPEALD 177

Query: 198 WGVVDKVLMSRIDIEEKSK 216
           +G++ +VL     +  +++
Sbjct: 178 YGLISEVLEDEAALMARAE 196


>gi|228909907|ref|ZP_04073728.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis IBL 200]
 gi|228849742|gb|EEM94575.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis IBL 200]
          Length = 396

 Score = 34.8 bits (79), Expect = 7.5,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQ--PSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           A S    +    +K     L N         P+      A+D+   A++++K       +
Sbjct: 144 AGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMK-----YPL 198

Query: 169 YVKNCGKTYEEVEKTLDRDHIM 190
             K  GK  + + +  D+   +
Sbjct: 199 IRKYTGKYEDYLREDTDKKFWL 220


>gi|229146650|ref|ZP_04275017.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus BDRD-ST24]
 gi|228636820|gb|EEK93283.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus BDRD-ST24]
          Length = 396

 Score = 34.8 bits (79), Expect = 7.5,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQ--PSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           A S    +    +K     L N         P+      A+D+   A++++K       +
Sbjct: 144 AGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMK-----YPL 198

Query: 169 YVKNCGKTYEEVEKTLDRDHIM 190
             K  GK  + + +  D+   +
Sbjct: 199 IRKYTGKYEDYLREDTDKKFWL 220


>gi|206971113|ref|ZP_03232064.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
           AH1134]
 gi|228960342|ref|ZP_04121995.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|229129356|ref|ZP_04258327.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus BDRD-Cer4]
 gi|229152278|ref|ZP_04280471.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus m1550]
 gi|296504570|ref|YP_003666270.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
 gi|206733885|gb|EDZ51056.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
           AH1134]
 gi|228631240|gb|EEK87876.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus m1550]
 gi|228653961|gb|EEL09828.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus BDRD-Cer4]
 gi|228799366|gb|EEM46330.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|296325622|gb|ADH08550.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
          Length = 396

 Score = 34.8 bits (79), Expect = 7.5,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQ--PSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           A S    +    +K     L N         P+      A+D+   A++++K       +
Sbjct: 144 AGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMK-----YPL 198

Query: 169 YVKNCGKTYEEVEKTLDRDHIM 190
             K  GK  + + +  D+   +
Sbjct: 199 IRKYTGKYEDYLREDTDKKFWL 220


>gi|108563100|ref|YP_627416.1| acetyl coenzyme A acetyltransferase [Helicobacter pylori HPAG1]
 gi|107836873|gb|ABF84742.1| acetyl coenzyme A acetyltransferase [Helicobacter pylori HPAG1]
          Length = 391

 Score = 34.8 bits (79), Expect = 7.5,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 42/149 (28%), Gaps = 13/149 (8%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104
           V +   +   +   I  Q+         K         G  + A    +D++      + 
Sbjct: 51  VILGNVLGAGLGQNIARQIQLDAGIPNDKNAFSVNMVCGSSMKAIQLAHDSIMLGHGEVV 110

Query: 105 TFCMGQAASMGSLLLSAGEKGMRFALPNA-RILLHQPSGGFSG------------QASDI 151
                +  SM   L      G R    N    ++H                    QA  I
Sbjct: 111 VCGGVENMSMAPYLSFDMRDGKRMGNANMIDSMIHDGLWDAFNDYHMGITADNVAQAYHI 170

Query: 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
            R  QD   ++ +L      N GK  EE+
Sbjct: 171 SREEQDNFALQSQLKARAAINAGKFQEEI 199


>gi|169829177|ref|YP_001699335.1| hypothetical protein Bsph_3721 [Lysinibacillus sphaericus C3-41]
 gi|168993665|gb|ACA41205.1| Hypothetical yqeZ protein [Lysinibacillus sphaericus C3-41]
          Length = 428

 Score = 34.8 bits (79), Expect = 7.6,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 53/143 (37%), Gaps = 25/143 (17%)

Query: 69  ENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIST--FCMGQAASMGSLLLSAGEKGM 126
           EN  K I L I++PGG V A   I   M      I T  F    A S G+ L    ++  
Sbjct: 44  ENNAKAIILDIHTPGGFVNAASDI--AMLMDATDIWTIAFINKDAHSAGAFLALHADEI- 100

Query: 127 RFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186
            + +PN  I          G  +D++ ++  + ++         +  G+  +      D 
Sbjct: 101 -YMVPNGTIGAAAVIDSA-GNTADLKANSAWLAQMSAA-----AETSGRDPKYALAMADS 153

Query: 187 DH-------------IMSASEAC 196
           ++              +SASEA 
Sbjct: 154 NYELPEYRAEGKNLLTLSASEAL 176


>gi|149184711|ref|ZP_01863029.1| hypothetical protein ED21_28373 [Erythrobacter sp. SD-21]
 gi|148832031|gb|EDL50464.1| hypothetical protein ED21_28373 [Erythrobacter sp. SD-21]
          Length = 186

 Score = 34.8 bits (79), Expect = 7.7,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 53/155 (34%), Gaps = 14/155 (9%)

Query: 65  FLEAENPQKEISLYINSPGGVVTAGMAIYD---TMQFIKPPISTFCMGQAASMGSLLLSA 121
            L A      + + + + GG      A+ D    ++     I         S G+  ++ 
Sbjct: 32  QLSAGPTDGPLVIALTTLGGNPEIARAMADDVRLLREAGRTIYFLGKAAVYSAGATFMAG 91

Query: 122 GEKGMRFALPNARILLH--------QPSGGFSGQASDIERHAQDIVK---IKRRLNEIYV 170
                RF   ++ +L+H          SG      + ++    +I +   I+        
Sbjct: 92  FPIACRFLTRDSTLLIHERQINKTISLSGPLRSCTNQLKAALNEIEQSIAIEEAGFRALA 151

Query: 171 KNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205
           +     +E++ +    +  +   +A + G++  V+
Sbjct: 152 EGSKVDFEKIREKAPDNWYLGCEKAKELGLIADVI 186


>gi|30022162|ref|NP_833793.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
 gi|29897719|gb|AAP10994.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
          Length = 396

 Score = 34.8 bits (79), Expect = 7.7,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQ--PSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           A S    +    +K     L N         P+      A+D+   A++++K       +
Sbjct: 144 AGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMK-----YPL 198

Query: 169 YVKNCGKTYEEVEKTLDRDHIM 190
             K  GK  + + +  D+   +
Sbjct: 199 IRKYTGKYEDYLREDTDKKFWL 220


>gi|30264153|ref|NP_846530.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. Ames]
 gi|47529591|ref|YP_020940.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186984|ref|YP_030236.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str.
           Sterne]
 gi|49478519|ref|YP_038135.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52141418|ref|YP_085412.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L]
 gi|165871194|ref|ZP_02215844.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. A0488]
 gi|167633524|ref|ZP_02391848.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. A0442]
 gi|167639446|ref|ZP_02397717.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. A0193]
 gi|170687106|ref|ZP_02878324.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. A0465]
 gi|170705633|ref|ZP_02896096.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. A0389]
 gi|177652667|ref|ZP_02935083.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. A0174]
 gi|190566126|ref|ZP_03019045.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           Tsiankovskii-I]
 gi|196034968|ref|ZP_03102375.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus W]
 gi|196038612|ref|ZP_03105920.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
           NVH0597-99]
 gi|196045795|ref|ZP_03113024.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
           03BB108]
 gi|218905213|ref|YP_002453047.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
           AH820]
 gi|225866062|ref|YP_002751440.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
           03BB102]
 gi|227816855|ref|YP_002816864.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. CDC 684]
 gi|228916716|ref|ZP_04080281.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|229602274|ref|YP_002868377.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. A0248]
 gi|254683845|ref|ZP_05147705.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str.
           CNEVA-9066]
 gi|254721680|ref|ZP_05183469.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. A1055]
 gi|254736192|ref|ZP_05193898.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str.
           Western North America USA6153]
 gi|254744081|ref|ZP_05201764.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. Kruger
           B]
 gi|254754139|ref|ZP_05206174.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str.
           Vollum]
 gi|254758171|ref|ZP_05210198.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str.
           Australia 94]
 gi|301055572|ref|YP_003793783.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis CI]
 gi|30258798|gb|AAP28016.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. Ames]
 gi|47504739|gb|AAT33415.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49180911|gb|AAT56287.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str.
           Sterne]
 gi|49330075|gb|AAT60721.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51974887|gb|AAU16437.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L]
 gi|164713113|gb|EDR18640.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. A0488]
 gi|167512505|gb|EDR87880.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. A0193]
 gi|167530930|gb|EDR93617.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. A0442]
 gi|170129173|gb|EDS98037.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. A0389]
 gi|170668723|gb|EDT19468.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. A0465]
 gi|172082002|gb|EDT67070.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. A0174]
 gi|190563045|gb|EDV17011.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           Tsiankovskii-I]
 gi|195992507|gb|EDX56468.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus W]
 gi|196023235|gb|EDX61913.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
           03BB108]
 gi|196030335|gb|EDX68934.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
           NVH0597-99]
 gi|218534801|gb|ACK87199.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
           AH820]
 gi|225785916|gb|ACO26133.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
           03BB102]
 gi|227005442|gb|ACP15185.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. CDC 684]
 gi|228842903|gb|EEM87986.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|229266682|gb|ACQ48319.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. A0248]
 gi|300377741|gb|ADK06645.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus biovar
           anthracis str. CI]
          Length = 396

 Score = 34.8 bits (79), Expect = 7.7,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQ--PSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           A S    +    +K     L N         P+      A+D+   A++++K       +
Sbjct: 144 AGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHYSTANDMAIMAKELMK-----YPL 198

Query: 169 YVKNCGKTYEEVEKTLDRDHIM 190
             K  GK  + + +  D+   +
Sbjct: 199 IRKYTGKYEDYLREDTDKKFWL 220


>gi|51245665|ref|YP_065549.1| acetyl-coenzyme A carboxylase  subunits alpha/beta [Desulfotalea
           psychrophila LSv54]
 gi|50876702|emb|CAG36542.1| related to acetyl-coenzyme A carboxylase (fusion of alpha and beta
           subunit) [Desulfotalea psychrophila LSv54]
          Length = 753

 Score = 34.8 bits (79), Expect = 7.7,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 48/148 (32%), Gaps = 33/148 (22%)

Query: 68  AENPQKEISLYINSPGGVVTA---------GMAIYDTMQFIKPPISTFCMGQAASMGSLL 118
           AE     I  YI +PG                 IY   +   P +S    G +    ++ 
Sbjct: 171 AETEGIPIHFYIFTPGSYPVEEYPGAAQQIARNIYAMAKLRVPMVSIISEGGSGGAEAI- 229

Query: 119 LSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYE 178
              G    R    +    +  P G     A+ IE    +  K+ R L E+          
Sbjct: 230 ---GLSDYRMMASHGYYSVISPEG-----AAAIEGRVGEGKKVPRELIEVCA-------- 273

Query: 179 EVEKTLDRDHIMSASEACDWGVVDKVLM 206
                 DR   ++A +  + G +D+++ 
Sbjct: 274 ------DRLR-LTAKDNLEHGTIDRIIQ 294


>gi|228987267|ref|ZP_04147388.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228772496|gb|EEM20941.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 385

 Score = 34.8 bits (79), Expect = 7.7,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQ--PSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           A S    +    +K     L N         P+      A+D+   A++++K       +
Sbjct: 133 AGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHYSTANDMAIMAKELMK-----YPL 187

Query: 169 YVKNCGKTYEEVEKTLDRDHIM 190
             K  GK  + + +  D+   +
Sbjct: 188 IRKYTGKYEDYLREDTDKKFWL 209


>gi|229111549|ref|ZP_04241100.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus Rock1-15]
 gi|228671931|gb|EEL27224.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus Rock1-15]
          Length = 385

 Score = 34.8 bits (79), Expect = 7.7,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQ--PSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           A S    +    +K     L N         P+      A+D+   A++++K       +
Sbjct: 133 AGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMK-----YPL 187

Query: 169 YVKNCGKTYEEVEKTLDRDHIM 190
             K  GK  + + +  D+   +
Sbjct: 188 IRKYTGKYEDYLREDTDKKFWL 209


>gi|217961569|ref|YP_002340139.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
           AH187]
 gi|222097526|ref|YP_002531583.1| d-alanyl-d-alanine carboxypeptidase [Bacillus cereus Q1]
 gi|217065681|gb|ACJ79931.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
           AH187]
 gi|221241584|gb|ACM14294.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Q1]
          Length = 396

 Score = 34.8 bits (79), Expect = 7.7,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQ--PSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           A S    +    +K     L N         P+      A+D+   A++++K       +
Sbjct: 144 AGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHYSTANDMAIMAKELMK-----YPL 198

Query: 169 YVKNCGKTYEEVEKTLDRDHIM 190
             K  GK  + + +  D+   +
Sbjct: 199 IRKYTGKYEDYLREDTDKKFWL 220


>gi|42783191|ref|NP_980438.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10987]
 gi|229174752|ref|ZP_04302276.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus MM3]
 gi|42739119|gb|AAS43046.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10987]
 gi|228608742|gb|EEK66040.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus MM3]
          Length = 396

 Score = 34.8 bits (79), Expect = 7.7,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQ--PSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           A S    +    +K     L N         P+      A+D+   A++++K       +
Sbjct: 144 AGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHYSTANDMAIMAKELMK-----YPL 198

Query: 169 YVKNCGKTYEEVEKTLDRDHIM 190
             K  GK  + + +  D+   +
Sbjct: 199 IRKYTGKYEDYLREDTDKKFWL 220


>gi|229093134|ref|ZP_04224256.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus Rock3-42]
 gi|228690283|gb|EEL44076.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus Rock3-42]
          Length = 385

 Score = 34.8 bits (79), Expect = 7.8,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQ--PSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           A S    +    +K     L N         P+      A+D+   A++++K       +
Sbjct: 133 AGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHYSTANDMAIMAKELMK-----YPL 187

Query: 169 YVKNCGKTYEEVEKTLDRDHIM 190
             K  GK  + + +  D+   +
Sbjct: 188 IRKYTGKYEDYLREDTDKKFWL 209


>gi|229140812|ref|ZP_04269357.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus BDRD-ST26]
 gi|228642602|gb|EEK98888.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus BDRD-ST26]
          Length = 385

 Score = 34.8 bits (79), Expect = 7.8,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQ--PSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           A S    +    +K     L N         P+      A+D+   A++++K       +
Sbjct: 133 AGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHYSTANDMAIMAKELMK-----YPL 187

Query: 169 YVKNCGKTYEEVEKTLDRDHIM 190
             K  GK  + + +  D+   +
Sbjct: 188 IRKYTGKYEDYLREDTDKKFWL 209


>gi|228929125|ref|ZP_04092152.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228935397|ref|ZP_04098215.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228947796|ref|ZP_04110083.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229123599|ref|ZP_04252794.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus 95/8201]
 gi|229157660|ref|ZP_04285735.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus ATCC 4342]
 gi|228625617|gb|EEK82369.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus ATCC 4342]
 gi|228659734|gb|EEL15379.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus 95/8201]
 gi|228811783|gb|EEM58117.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228824149|gb|EEM69963.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228830415|gb|EEM76025.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
          Length = 385

 Score = 34.8 bits (79), Expect = 7.8,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQ--PSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           A S    +    +K     L N         P+      A+D+   A++++K       +
Sbjct: 133 AGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHYSTANDMAIMAKELMK-----YPL 187

Query: 169 YVKNCGKTYEEVEKTLDRDHIM 190
             K  GK  + + +  D+   +
Sbjct: 188 IRKYTGKYEDYLREDTDKKFWL 209


>gi|225620674|ref|YP_002721932.1| membrane-bound serine protease NfeD [Brachyspira hyodysenteriae
           WA1]
 gi|225215494|gb|ACN84228.1| NfeD, Membrane-bound serine protease (ClpP class) [Brachyspira
           hyodysenteriae WA1]
          Length = 444

 Score = 34.8 bits (79), Expect = 7.8,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 55/146 (37%), Gaps = 22/146 (15%)

Query: 75  ISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRF------ 128
           I L +++PGG++++ ++I + +     P+  +    A S G+L+  + ++          
Sbjct: 63  IILELDTPGGLLSSALSIKNYIMESNVPVVVYINKNALSAGALISLSAKEIYMSDGSVIG 122

Query: 129 ALPNARILLHQPSGGFSGQASDIE---RHAQDIVKIKRRLNEIYVKNC--------GKTY 177
           A     +  ++P      + S +    R + +  K   +  E  V           G   
Sbjct: 123 AATPVYLNGNEPKKAGEKEVSAMRAAMRSSAETTKKNAKAAEAMVDETIILTKKSDGIDL 182

Query: 178 EEVEKTLDRDHIMSASEACDWGVVDK 203
           ++          +SA EA    + DK
Sbjct: 183 DDKTLLT-----LSADEAVSINIADK 203


>gi|229031719|ref|ZP_04187712.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus AH1271]
 gi|229071580|ref|ZP_04204798.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus F65185]
 gi|229081333|ref|ZP_04213836.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus Rock4-2]
 gi|229180356|ref|ZP_04307699.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus 172560W]
 gi|228603103|gb|EEK60581.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus 172560W]
 gi|228701955|gb|EEL54438.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus Rock4-2]
 gi|228711516|gb|EEL63473.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus F65185]
 gi|228729603|gb|EEL80590.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus AH1271]
          Length = 385

 Score = 34.8 bits (79), Expect = 7.9,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQ--PSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           A S    +    +K     L N         P+      A+D+   A++++K       +
Sbjct: 133 AGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMK-----YPL 187

Query: 169 YVKNCGKTYEEVEKTLDRDHIM 190
             K  GK  + + +  D+   +
Sbjct: 188 IRKYTGKYEDYLREDTDKKFWL 209


>gi|229198199|ref|ZP_04324908.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus m1293]
 gi|228585359|gb|EEK43468.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus m1293]
          Length = 385

 Score = 34.8 bits (79), Expect = 7.9,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQ--PSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           A S    +    +K     L N         P+      A+D+   A++++K       +
Sbjct: 133 AGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHYSTANDMAIMAKELMK-----YPL 187

Query: 169 YVKNCGKTYEEVEKTLDRDHIM 190
             K  GK  + + +  D+   +
Sbjct: 188 IRKYTGKYEDYLREDTDKKFWL 209


>gi|294084516|ref|YP_003551274.1| hypothetical protein SAR116_0947 [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664089|gb|ADE39190.1| hypothetical protein SAR116_0947 [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 289

 Score = 34.8 bits (79), Expect = 7.9,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 26/60 (43%)

Query: 68  AENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127
           +E     I++++ +PGG V A   +   ++     +       A S  ++L  +G+K   
Sbjct: 55  SEIETNAIAMFLRTPGGAVEAAERMVSVLRKHYKDVYFVVPDVAMSASTILCMSGDKIYM 114


>gi|281487033|gb|ADA71068.1| putative capsid protein [Wolbachia phage WO]
          Length = 123

 Score = 34.8 bits (79), Expect = 7.9,   Method: Composition-based stats.
 Identities = 7/52 (13%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
           +E   +++ ++     ++  +N G + E++ ++ +        +A + G+ D
Sbjct: 2   LESLQKEVDRLYEMFVQLIARNRGLSIEKI-RSTEAGLYF-GEKAVEIGLAD 51


>gi|229019288|ref|ZP_04176114.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus AH1273]
 gi|229025532|ref|ZP_04181942.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus AH1272]
 gi|228735814|gb|EEL86399.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus AH1272]
 gi|228741973|gb|EEL92147.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus AH1273]
          Length = 385

 Score = 34.8 bits (79), Expect = 7.9,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQ--PSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           A S    +    +K     L N         P+      A+D+   A++++K       +
Sbjct: 133 AGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMK-----YPL 187

Query: 169 YVKNCGKTYEEVEKTLDRDHIM 190
             K  GK  + + +  D+   +
Sbjct: 188 IRKYTGKYEDYLREDTDKKFWL 209


>gi|324327983|gb|ADY23243.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 396

 Score = 34.8 bits (79), Expect = 8.0,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQ--PSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           A S    +    +K     L N         P+      A+D+   A++++K       +
Sbjct: 144 AGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHYSTANDMAIMAKELMK-----YPL 198

Query: 169 YVKNCGKTYEEVEKTLDRDHIM 190
             K  GK  + + +  D+   +
Sbjct: 199 IRKYTGKYEDYLREDTDKKFWL 220


>gi|281487025|gb|ADA71064.1| putative capsid protein [Wolbachia phage WO]
          Length = 118

 Score = 34.8 bits (79), Expect = 8.0,   Method: Composition-based stats.
 Identities = 7/52 (13%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202
           +E   +++ ++     ++  +N G + E++ ++ +        +A + G+ D
Sbjct: 2   LESLQKEVDRLYEMFVQLIARNRGLSIEKI-RSTEAGLYF-GEKAVEIGLAD 51


>gi|228954361|ref|ZP_04116387.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228805293|gb|EEM51886.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 396

 Score = 34.8 bits (79), Expect = 8.0,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQ--PSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           A S    +    +K     L N         P+      A+D+   A++++K       +
Sbjct: 144 AGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMK-----YPL 198

Query: 169 YVKNCGKTYEEVEKTLDRDHIM 190
             K  GK  + + +  D+   +
Sbjct: 199 IRKYTGKYEDYLREDTDKKFWL 220


>gi|228941227|ref|ZP_04103780.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228974159|ref|ZP_04134729.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228980751|ref|ZP_04141056.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis Bt407]
 gi|228778920|gb|EEM27182.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis Bt407]
 gi|228785499|gb|EEM33508.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228818386|gb|EEM64458.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|326941850|gb|AEA17746.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 396

 Score = 34.8 bits (79), Expect = 8.0,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQ--PSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           A S    +    +K     L N         P+      A+D+   A++++K       +
Sbjct: 144 AGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMK-----YPL 198

Query: 169 YVKNCGKTYEEVEKTLDRDHIM 190
             K  GK  + + +  D+   +
Sbjct: 199 IRKYTGKYEDYLREDTDKKFWL 220


>gi|75762410|ref|ZP_00742280.1| D-alanyl-D-alanine serine-type carboxypeptidase [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|218899237|ref|YP_002447648.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
           G9842]
 gi|228967109|ref|ZP_04128145.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar sotto str. T04001]
 gi|74490103|gb|EAO53449.1| D-alanyl-D-alanine serine-type carboxypeptidase [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|218543204|gb|ACK95598.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
           G9842]
 gi|228792478|gb|EEM40044.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 396

 Score = 34.8 bits (79), Expect = 8.1,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQ--PSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           A S    +    +K     L N         P+      A+D+   A++++K       +
Sbjct: 144 AGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMK-----YPL 198

Query: 169 YVKNCGKTYEEVEKTLDRDHIM 190
             K  GK  + + +  D+   +
Sbjct: 199 IRKYTGKYEDYLREDTDKKFWL 220


>gi|52145326|gb|AAU29367.1| putative capsid protein [Wolbachia phage WO]
          Length = 118

 Score = 34.8 bits (79), Expect = 8.2,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           +E   +++ ++     ++  +N G + E++ ++ +        +A + GV D V
Sbjct: 2   LESLQKEVDRLYEMFLQLIARNRGLSIEKI-RSTEAGLYF-GEKAVEIGVADGV 53


>gi|65321470|ref|ZP_00394429.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. A2012]
 gi|118479279|ref|YP_896430.1| D-alanyl-D-alanine carboxypeptidase DacF [Bacillus thuringiensis
           str. Al Hakam]
 gi|118418504|gb|ABK86923.1| D-Ala-D-Ala carboxypeptidase DacF, Serine peptidase, MEROPS family
           S11 [Bacillus thuringiensis str. Al Hakam]
          Length = 398

 Score = 34.8 bits (79), Expect = 8.2,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQ--PSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           A S    +    +K     L N         P+      A+D+   A++++K       +
Sbjct: 146 AGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHYSTANDMAIMAKELMK-----YPL 200

Query: 169 YVKNCGKTYEEVEKTLDRDHIM 190
             K  GK  + + +  D+   +
Sbjct: 201 IRKYTGKYEDYLREDTDKKFWL 222


>gi|296090178|emb|CBI39997.3| unnamed protein product [Vitis vinifera]
          Length = 68

 Score = 34.8 bits (79), Expect = 8.3,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 117 LLLSAGEKGMRFALPNARILLHQPSGGFS-GQASDIERHAQDIVKIKRRLNEIYVKNCGK 175
           L+     K     L   +++ HQP   F   Q  +    A+++VK+   + ++YV+  G+
Sbjct: 3   LISIIFPKVWVKDLNPTQVMNHQPVAAFYKAQMGEFVMEAEELVKLHETITKVYVQKNGQ 62

Query: 176 TY 177
             
Sbjct: 63  AL 64


>gi|259417618|ref|ZP_05741537.1| enoyl-coa hydratase [Silicibacter sp. TrichCH4B]
 gi|259346524|gb|EEW58338.1| enoyl-coa hydratase [Silicibacter sp. TrichCH4B]
          Length = 258

 Score = 34.8 bits (79), Expect = 8.4,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 56/174 (32%), Gaps = 31/174 (17%)

Query: 41  KERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK 100
           K R + +TG  +   A     ++              Y++     + A     D +  I+
Sbjct: 48  KVRCIVLTGSEKAFAAGADIKEMSE----------MSYVDVFTSNLFADTN--DRISAIR 95

Query: 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVK 160
            PI     G A   G  +    +    F +        QP           E +   I  
Sbjct: 96  KPIIAAVSGYALGGGCEVAMMCD----FIIAAETAKFGQP-----------EINLGVIAG 140

Query: 161 IKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214
           +     +   +  GK+         R   M+A EA   G+V +V+ ++  IEE 
Sbjct: 141 MGGT--QRLTRFVGKSKSMDMNLTGR--FMTAEEAERAGLVSRVVPAKKLIEEA 190


>gi|228902586|ref|ZP_04066737.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis IBL 4222]
 gi|228857027|gb|EEN01536.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis IBL 4222]
          Length = 385

 Score = 34.8 bits (79), Expect = 8.4,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQ--PSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           A S    +    +K     L N         P+      A+D+   A++++K       +
Sbjct: 133 AGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMK-----YPL 187

Query: 169 YVKNCGKTYEEVEKTLDRDHIM 190
             K  GK  + + +  D+   +
Sbjct: 188 IRKYTGKYEDYLREDTDKKFWL 209


>gi|229104683|ref|ZP_04235345.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus Rock3-28]
 gi|228678747|gb|EEL32962.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus Rock3-28]
          Length = 385

 Score = 34.8 bits (79), Expect = 8.4,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQ--PSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           A S    +    +K     L N         P+      A+D+   A++++K       +
Sbjct: 133 AGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMK-----YPL 187

Query: 169 YVKNCGKTYEEVEKTLDRDHIM 190
             K  GK  + + +  D+   +
Sbjct: 188 IRKYTGKYEDYLREDTDKKFWL 209


>gi|229061749|ref|ZP_04199082.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus AH603]
 gi|229168820|ref|ZP_04296539.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus AH621]
 gi|228614668|gb|EEK71774.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus AH621]
 gi|228717495|gb|EEL69159.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus AH603]
          Length = 385

 Score = 34.8 bits (79), Expect = 8.4,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQ--PSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           A S    +    +K     L N         P+      A+D+   A++++K       +
Sbjct: 133 AGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMK-----YPL 187

Query: 169 YVKNCGKTYEEVEKTLDRDHIM 190
             K  GK  + + +  D+   +
Sbjct: 188 IRKYTGKYEDYLREDTDKKFWL 209


>gi|229186322|ref|ZP_04313487.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus BGSC 6E1]
 gi|228597116|gb|EEK54771.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus BGSC 6E1]
          Length = 396

 Score = 34.8 bits (79), Expect = 8.4,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQ--PSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           A S    +    +K     L N         P+      A+D+   A++++K       +
Sbjct: 144 AGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHYSTANDMAIMAKELMK-----YPL 198

Query: 169 YVKNCGKTYEEVEKTLDRDHIM 190
             K  GK  + + +  D+   +
Sbjct: 199 IRKYTGKYEDYLREDTDKKFWL 220


>gi|229192288|ref|ZP_04319253.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus ATCC 10876]
 gi|228591238|gb|EEK49092.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus ATCC 10876]
          Length = 385

 Score = 34.8 bits (79), Expect = 8.4,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQ--PSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           A S    +    +K     L N         P+      A+D+   A++++K       +
Sbjct: 133 AGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMK-----YPL 187

Query: 169 YVKNCGKTYEEVEKTLDRDHIM 190
             K  GK  + + +  D+   +
Sbjct: 188 IRKYTGKYEDYLREDTDKKFWL 209


>gi|251810633|ref|ZP_04825106.1| carbamoyl phosphate synthase large subunit [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|282876365|ref|ZP_06285232.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus
           epidermidis SK135]
 gi|251805793|gb|EES58450.1| carbamoyl phosphate synthase large subunit [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|281295390|gb|EFA87917.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus
           epidermidis SK135]
          Length = 1057

 Score = 34.8 bits (79), Expect = 8.5,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 195 ACDWGVVDKVLMSRIDIEEKS 215
           A D+G  DKV+  R D EEK 
Sbjct: 485 AKDYGFSDKVIAHRWDKEEKD 505


>gi|237750827|ref|ZP_04581307.1| signal peptide protease IV [Helicobacter bilis ATCC 43879]
 gi|229373272|gb|EEO23663.1| signal peptide protease IV [Helicobacter bilis ATCC 43879]
          Length = 294

 Score = 34.8 bits (79), Expect = 8.5,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 65/180 (36%), Gaps = 31/180 (17%)

Query: 56  ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI--KPPISTFCMGQAAS 113
           +    AQ+  ++  +  K + L I+SPGG V A + I D ++ +  K P+  +     AS
Sbjct: 61  SESFAAQIEAIKKNDDIKGVLLLIDSPGGAVGASIEIADMIKELNEKIPVVAYTQSLMAS 120

Query: 114 MGSLL------------LSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKI 161
                               G  G+ F+ PN    + +      G ++   +    I + 
Sbjct: 121 GSYYAGMYAHSIYANRGALIGSIGVIFSAPNFEEAMDKIGIKMQGVSAGEYKEIGSITRK 180

Query: 162 KRRLNEIYVKNCGKTY------EEVEKTLDR-----------DHIMSASEACDWGVVDKV 204
            +   + ++ N  +        + +    +R             I SAS A   G++D V
Sbjct: 181 WKNTEKEFINNLTQEQYKMFYTDVIAARGERLKTKNHLDFAEGKIFSASNALKLGLIDGV 240


>gi|15606868|ref|NP_214248.1| nodulation competitiveness protein NfeD [Aquifex aeolicus VF5]
 gi|2984101|gb|AAC07639.1| nodulation competitiveness protein NfeD [Aquifex aeolicus VF5]
          Length = 425

 Score = 34.8 bits (79), Expect = 8.5,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 68/188 (36%), Gaps = 14/188 (7%)

Query: 33  YDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI 92
           + ++    K  +    G I    A  +   +   + E     I L +N+PGG+V +   I
Sbjct: 9   FWVFFSFGKIFVAQWEGPITPTTADYVERTIQKAQKEGGTLYILL-LNTPGGLVESMRKI 67

Query: 93  YDTMQFIKPPISTFCM--------GQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF 144
             + +    PI  +            A    +  ++A   G      +  +   Q     
Sbjct: 68  IQSFETAPFPIVVYVYPPGGRAASAGAIITIAADIAAMAPGTNIGAAHPVLATPQGREKK 127

Query: 145 S-GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
             G+   +E+  QD++           K  G+  + VEK +     +SA EA   GV+D 
Sbjct: 128 EKGKDVMMEKVLQDMLAF----VRAIAKEKGRNVKVVEKMVKESLSLSAEEALKKGVIDL 183

Query: 204 VLMSRIDI 211
           +  +  D+
Sbjct: 184 IAYNLEDL 191


>gi|296126378|ref|YP_003633630.1| single-stranded-DNA-specific exonuclease RecJ [Brachyspira
           murdochii DSM 12563]
 gi|296018194|gb|ADG71431.1| single-stranded-DNA-specific exonuclease RecJ [Brachyspira
           murdochii DSM 12563]
          Length = 719

 Score = 34.8 bits (79), Expect = 8.5,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 3/75 (4%)

Query: 34  DIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           DI+    ++ I  ++         +  A+L   EA    ++I +Y +     VTA   IY
Sbjct: 25  DIFDFFFQD-IYSLSNPFSIKDVNVFVARLK--EAIESNEKILVYGDKDADGVTAASIIY 81

Query: 94  DTMQFIKPPISTFCM 108
           +T++ +   +  F  
Sbjct: 82  NTLKMVTKNVEAFVP 96


>gi|148974853|ref|ZP_01811833.1| enoyl-CoA hydratase [Vibrionales bacterium SWAT-3]
 gi|145965362|gb|EDK30611.1| enoyl-CoA hydratase [Vibrionales bacterium SWAT-3]
          Length = 270

 Score = 34.8 bits (79), Expect = 8.5,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 40/112 (35%), Gaps = 23/112 (20%)

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDI--ERH 154
           + I  P+     G+    G  L+S G+   R A P+A   + +      G   D+     
Sbjct: 102 RDIPCPVIFAIHGRCWGGGLQLVSGGD--FRIASPDANFSILEAK---WGLIPDMGGAIA 156

Query: 155 AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
            +++++    L                K +D +       A ++G+V K+  
Sbjct: 157 FRELMRKDHTLEMAMT----------AKVIDSET------AKEYGLVTKIAE 192


>gi|27467797|ref|NP_764434.1| carbamoyl phosphate synthase large subunit [Staphylococcus
           epidermidis ATCC 12228]
 gi|38257574|sp|Q8CPJ4|CARB_STAES RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|27315341|gb|AAO04476.1|AE016746_266 carbamoyl-phosphate synthase large chain [Staphylococcus
           epidermidis ATCC 12228]
 gi|329729964|gb|EGG66355.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus
           epidermidis VCU144]
 gi|329736345|gb|EGG72617.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus
           epidermidis VCU028]
          Length = 1057

 Score = 34.8 bits (79), Expect = 8.5,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 195 ACDWGVVDKVLMSRIDIEEKS 215
           A D+G  DKV+  R D EEK 
Sbjct: 485 AKDYGFSDKVIAHRWDKEEKD 505


>gi|229075784|ref|ZP_04208761.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus Rock4-18]
 gi|229098546|ref|ZP_04229487.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus Rock3-29]
 gi|229117572|ref|ZP_04246944.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus Rock1-3]
 gi|228665892|gb|EEL21362.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus Rock1-3]
 gi|228684868|gb|EEL38805.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus Rock3-29]
 gi|228707336|gb|EEL59532.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus Rock4-18]
          Length = 385

 Score = 34.8 bits (79), Expect = 8.7,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQ--PSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           A S    +    +K     L N         P+      A+D+   A++++K       +
Sbjct: 133 AGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMK-----YPL 187

Query: 169 YVKNCGKTYEEVEKTLDRDHIM 190
             K  GK  + + +  D+   +
Sbjct: 188 IRKYTGKYEDYLREDTDKKFWL 209


>gi|293366832|ref|ZP_06613508.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|291319133|gb|EFE59503.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329736674|gb|EGG72940.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus
           epidermidis VCU045]
          Length = 1057

 Score = 34.8 bits (79), Expect = 8.7,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 195 ACDWGVVDKVLMSRIDIEEKS 215
           A D+G  DKV+  R D EEK 
Sbjct: 485 AKDYGFSDKVIAHRWDKEEKD 505


>gi|229163014|ref|ZP_04290970.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus R309803]
 gi|228620420|gb|EEK77290.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus R309803]
          Length = 385

 Score = 34.8 bits (79), Expect = 8.7,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQ--PSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           A S    +    +K     L N         P+      A+D+   A++++K       +
Sbjct: 133 AGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMK-----YPL 187

Query: 169 YVKNCGKTYEEVEKTLDRDHIM 190
             K  GK  + + +  D+   +
Sbjct: 188 IRKYTGKYEDYLREDTDKKFWL 209


>gi|229047768|ref|ZP_04193348.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus AH676]
 gi|228723560|gb|EEL74925.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus AH676]
          Length = 377

 Score = 34.8 bits (79), Expect = 8.8,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 111 AASMGSLLLSAGEKGMRFALPNARILLHQ--PSGGFSGQASDIERHAQDIVKIKRRLNEI 168
           A S    +    +K     L N         P+      A+D+   A++++K       +
Sbjct: 125 AGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMK-----YPL 179

Query: 169 YVKNCGKTYEEVEKTLDRDHIM 190
             K  GK  + + +  D+   +
Sbjct: 180 IRKYTGKYEDYLREDTDKKFWL 201


>gi|91976347|ref|YP_569006.1| enoyl-CoA hydratase [Rhodopseudomonas palustris BisB5]
 gi|91682803|gb|ABE39105.1| Enoyl-CoA hydratase/isomerase [Rhodopseudomonas palustris BisB5]
          Length = 270

 Score = 34.8 bits (79), Expect = 8.8,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 36/110 (32%), Gaps = 19/110 (17%)

Query: 97  QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQ 156
           + +  P+     G A   G  L    +  +R   P+AR+ + +      G   D+     
Sbjct: 107 RMLPVPVIAAIHGVAFGGGFQLALGAD--IRLMAPDARMSIMEIK---WGLVPDMAGTPI 161

Query: 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
               ++  +        G              I SA EA  +G+  K++ 
Sbjct: 162 LASLVRDDILREL-TYTG-------------RIFSAQEALSYGLATKIVD 197


>gi|52145324|gb|AAU29366.1| putative capsid protein [Wolbachia phage WO]
          Length = 118

 Score = 34.5 bits (78), Expect = 9.4,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKV 204
           +E   +++ ++     ++  +N G + E++ ++ +        +A + GV D V
Sbjct: 2   LESLQKEVDRLYEMFLQLIARNRGLSIEKI-RSTEAGLYF-GEKAVEIGVADGV 53


>gi|326670797|ref|XP_687506.4| PREDICTED: lactase-phlorizin hydrolase [Danio rerio]
          Length = 1885

 Score = 34.5 bits (78), Expect = 9.5,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 70/206 (33%), Gaps = 17/206 (8%)

Query: 1    MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
            ++F            LG +P  V+Q   G+  Y +   LLK          E + A+   
Sbjct: 960  ITFNEPQTIAWLGYGLGQIPPNVKQP--GDAPYRVAHNLLKAHAQAYHTYDEKYRASQGG 1017

Query: 61   AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMG---QAASMGSL 117
               + L AE  +    L +N P  VV A  A+   + +   PI             +G+ 
Sbjct: 1018 LVSISLNAEWAEP---LDVNIPREVVAADRALQFQLGWFAHPIFKNGDYPEAMKWQVGNK 1074

Query: 118  LLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKR---RLNEIYVKNCG 174
                G K  R  LP+      Q      G A     +      ++    RLN I      
Sbjct: 1075 SELQGLKESR--LPH---FTDQEKAFIQGTADVFCINTYTTKVVRHVTSRLN-IESYQTD 1128

Query: 175  KTYEEVEKTLDRDHIMSASEACDWGV 200
            +  E+ +     +  +S  +A  WG+
Sbjct: 1129 QDIEKDKADGSENTAVSEQKAVAWGL 1154


>gi|169158711|emb|CAQ14839.1| novel protein similar to vertebrate lactase (LCT) [Danio rerio]
          Length = 1592

 Score = 34.5 bits (78), Expect = 9.5,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 70/206 (33%), Gaps = 17/206 (8%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           ++F            LG +P  V+Q   G+  Y +   LLK          E + A+   
Sbjct: 717 ITFNEPQTIAWLGYGLGQIPPNVKQP--GDAPYRVAHNLLKAHAQAYHTYDEKYRASQGG 774

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMG---QAASMGSL 117
              + L AE  +    L +N P  VV A  A+   + +   PI             +G+ 
Sbjct: 775 LVSISLNAEWAEP---LDVNIPREVVAADRALQFQLGWFAHPIFKNGDYPEAMKWQVGNK 831

Query: 118 LLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKR---RLNEIYVKNCG 174
               G K  R  LP+      Q      G A     +      ++    RLN I      
Sbjct: 832 SELQGLKESR--LPH---FTDQEKAFIQGTADVFCINTYTTKVVRHVTSRLN-IESYQTD 885

Query: 175 KTYEEVEKTLDRDHIMSASEACDWGV 200
           +  E+ +     +  +S  +A  WG+
Sbjct: 886 QDIEKDKADGSENTAVSEQKAVAWGL 911


>gi|58698082|ref|ZP_00373006.1| hypothetical protein WwAna1566 [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225630941|ref|YP_002727732.1| minor capsid protein C, putative [Wolbachia sp. wRi]
 gi|58535439|gb|EAL59514.1| hypothetical protein WwAna1566 [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225592922|gb|ACN95941.1| minor capsid protein C, putative [Wolbachia sp. wRi]
          Length = 360

 Score = 34.5 bits (78), Expect = 9.8,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206
           +E   +++ ++     E+  +N   + E + K+ +        +A + G+ D+V+ 
Sbjct: 192 LESLQEEVGRLYEMFVELVARNRNLSTETI-KSTEAGLYF-GEKAIEIGLADEVIT 245


>gi|150401144|ref|YP_001324910.1| signal peptide peptidase SppA, 36K type [Methanococcus aeolicus
           Nankai-3]
 gi|150013847|gb|ABR56298.1| signal peptide peptidase SppA, 36K type [Methanococcus aeolicus
           Nankai-3]
          Length = 290

 Score = 34.5 bits (78), Expect = 10.0,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 76/215 (35%), Gaps = 43/215 (20%)

Query: 44  IVFVTGQIEDH------------MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMA 91
           I+ +TG+I  +             A      L   E  +  K + L INSPGG V A   
Sbjct: 24  IIELTGEISSNGGDGGVFGGYSPSADEYIRLLDNAENNDGVKAVVLKINSPGGEVVASEK 83

Query: 92  IYDTMQFI--KPPISTFCMGQAASMGSLLL------------SAGEKGMRFALPNARILL 137
           +   ++ +  K P+  +     AS   +                G  G+   L +   L 
Sbjct: 84  LARKVKEVSEKKPVVAYIETIGASGAYMAAVPSDYIVAEKHSMVGSIGVIMGLSHYYELY 143

Query: 138 HQPSGGFS----GQASDI----ERHAQDIVKIKRRLN-EIY-------VKNCGKTYEEVE 181
            +     +    G+  DI         +  K+   +  E+Y        +N G    +  
Sbjct: 144 EKIGINTTTIKAGKYKDIGSPNRPMTDEEKKMLESMTDEMYGDFIKWVAENRGMDINKTY 203

Query: 182 KTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           +  +   I + S+A   G+VD V + +  I++ S+
Sbjct: 204 EVAE-GKIYTGSQAKKAGLVDAVGVEQDAIDKASE 237


  Database: nr
    Posted date:  May 13, 2011  4:10 AM
  Number of letters in database: 999,999,932
  Number of sequences in database:  2,987,209
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 13, 2011  4:17 AM
  Number of letters in database: 999,998,956
  Number of sequences in database:  2,896,973
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 13, 2011  4:23 AM
  Number of letters in database: 999,999,979
  Number of sequences in database:  2,907,862
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 13, 2011  4:29 AM
  Number of letters in database: 999,999,513
  Number of sequences in database:  2,932,190
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 13, 2011  4:33 AM
  Number of letters in database: 792,586,372
  Number of sequences in database:  2,260,650
  
Lambda     K      H
   0.313    0.154    0.446 

Lambda     K      H
   0.267   0.0473    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,081,183,170
Number of Sequences: 13984884
Number of extensions: 177194640
Number of successful extensions: 508937
Number of sequences better than 10.0: 5341
Number of HSP's better than 10.0 without gapping: 8273
Number of HSP's successfully gapped in prelim test: 1353
Number of HSP's that attempted gapping in prelim test: 496036
Number of HSP's gapped (non-prelim): 9926
length of query: 216
length of database: 4,792,584,752
effective HSP length: 133
effective length of query: 83
effective length of database: 2,932,595,180
effective search space: 243405399940
effective search space used: 243405399940
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 79 (34.8 bits)